bluuebunny/crossref_metadata_2025 huggingface dataset:
Genome-Wide Association Study of Post-Traumatic Stress Disorder in Two High-Risk Populations
Authors: Melroy-Greif Whitney E. , Wilhelmsen Kirk C. , Yehuda Rachel , Ehlers Cindy L.
Published: March 2017

Mexican Americans (MAs) and American Indians (AIs) constitute conspicuously understudied groups with respect to risk for post-traumatic stress disorder (PTSD), especially in light of findings showing racial/ethnic differences in trauma exposure and risk for PTSD. The purpose of this study was to examine genetic influences on PTSD in two minority cohorts. A genome-wide association study (GWAS) with sum PTSD symptoms for trauma-exposed subjects was run in each cohort. Six highly correlated variants in olfactory receptor family 11 subfamily L member 1 (OR11L1) were suggestively associated with PTSD in the MA cohort. These associations remained suggestively significant after permutation testing. A signal in a nearby olfactory receptor on chromosome 1, olfactory receptor family 2 subfamily L member 13 (OR2L13), tagged by rs151319968, was nominally associated with PTSD in the AI sample. Although no variants were significantly associated after correction for multiple testing in a meta-analysis of the two cohorts, pathway analysis of the top hits showed an enrichment cluster of terms related to sensory transduction, olfactory receptor activity, G-protein coupled receptors, and membrane. As previous studies have proposed a role for olfaction in PTSD, our results indicate this influence may be partially driven by genetic variation in the olfactory system.
Low-crystalline iron oxide hydroxide nanoparticle anode for high-performance supercapacitors
Authors: Owusu Kwadwo Asare , Qu Longbing , Li Jiantao , Wang Zhaoyang , Zhao Kangning , Yang Chao , Hercule Kalele Mulonda , Lin Chao , Shi Changwei , Wei Qiulong , Zhou Liang , Mai Liqiang
Published: March 2017

Carbon materials are generally preferred as anodes in supercapacitors; however, their low capacitance limits the attained energy density of supercapacitor devices with aqueous electrolytes. Here, we report a low-crystalline iron oxide hydroxide nanoparticle anode with comprehensive electrochemical performance at a wide potential window. The iron oxide hydroxide nanoparticles present capacitances of 1,066 and 716 F g−1 at mass loadings of 1.6 and 9.1 mg cm−2, respectively, a rate capability with 74.6% of capacitance retention at 30 A g−1, and cycling stability retaining 91% of capacitance after 10,000 cycles. The performance is attributed to a dominant capacitive charge-storage mechanism. An aqueous hybrid supercapacitor based on the iron oxide hydroxide anode shows stability during float voltage test for 450 h and an energy density of 104 Wh kg−1 at a power density of 1.27 kW kg−1. A packaged device delivers gravimetric and volumetric energy densities of 33.14 Wh kg−1 and 17.24 Wh l−1, respectively.
Malignant extracellular vesicles carrying MMP1 mRNA facilitate peritoneal dissemination in ovarian cancer
Authors: Yokoi Akira , Yoshioka Yusuke , Yamamoto Yusuke , Ishikawa Mitsuya , Ikeda Shun-ichi , Kato Tomoyasu , Kiyono Tohru , Takeshita Fumitaka , Kajiyama Hiroaki , Kikkawa Fumitaka , Ochiya Takahiro
Published: March 2017

Advanced ovarian cancers are highly metastatic due to frequent peritoneal dissemination, resulting in dismal prognosis. Here we report the functions of cancer-derived extracellular vesicles (EVs), which are emerging as important mediators of tumour metastasis. The EVs from highly metastatic cells strongly induce metastatic behaviour in moderately metastatic tumours. Notably, the cancer EVs efficiently induce apoptotic cell death in human mesothelial cells in vitro and in vivo, thus resulting in the destruction of the peritoneal mesothelium barrier. Whole transcriptome analysis shows that MMP1 is significantly elevated in mesothelial cells treated with highly metastatic cancer EVs and intact MMP1 mRNAs are selectively packaged in the EVs. Importantly, MMP1 expression in ovarian cancer is tightly correlated with a poor prognosis. Moreover, MMP1 mRNA-carrying EVs exist in the ascites of cancer patients and these EVs also induce apoptosis in mesothelial cells. Our findings elucidate a previously unknown mechanism of peritoneal dissemination via EVs.
Capture of heavy hydrogen isotopes in a metal-organic framework with active Cu(I) sites
Authors: Weinrauch I. , Savchenko I. , Denysenko D. , Souliou S. M. , Kim H-H , Le Tacon M. , Daemen L. L. , Cheng Y. , Mavrandonakis A. , Ramirez-Cuesta A. J. , Volkmer D. , Schütz G. , Hirscher M. , Heine T.
Published: March 2017

The production of pure deuterium and the removal of tritium from nuclear waste are the key challenges in separation of light isotopes. Presently, the technological methods are extremely energy- and cost-intensive. Here we report the capture of heavy hydrogen isotopes from hydrogen gas by selective adsorption at Cu(I) sites in a metal-organic framework. At the strongly binding Cu(I) sites (32 kJ mol−1) nuclear quantum effects result in higher adsorption enthalpies of heavier isotopes. The capture mechanism takes place most efficiently at temperatures above 80 K, when an isotope exchange allows the preferential adsorption of heavy isotopologues from the gas phase. Large difference in adsorption enthalpy of 2.5 kJ mol−1 between D2 and H2 results in D2-over-H2 selectivity of 11 at 100 K, to the best of our knowledge the largest value known to date. Combination of thermal desorption spectroscopy, Raman measurements, inelastic neutron scattering and first principles calculations for H2/D2 mixtures allows the prediction of selectivities for tritium-containing isotopologues.
The origin of carbon isotope vital effects in coccolith calcite
Authors: McClelland H. L. O. , Bruggeman J. , Hermoso M. , Rickaby R. E. M.
Published: March 2017

Calcite microfossils are widely used to study climate and oceanography in Earth’s geological past. Coccoliths, readily preserved calcite plates produced by a group of single-celled surface-ocean dwelling algae called coccolithophores, have formed a significant fraction of marine sediments since the Late Triassic. However, unlike the shells of foraminifera, their zooplankton counterparts, coccoliths remain underused in palaeo-reconstructions. Precipitated in an intracellular chemical and isotopic microenvironment, coccolith calcite exhibits large and enigmatic departures from the isotopic composition of abiogenic calcite, known as vital effects. Here we show that the calcification to carbon fixation ratio determines whether coccolith calcite is isotopically heavier or lighter than abiogenic calcite, and that the size of the deviation is determined by the degree of carbon utilization. We discuss the theoretical potential for, and current limitations of, coccolith-based CO2 paleobarometry, that may eventually facilitate use of the ubiquitous and geologically extensive sedimentary archive.
Epilepsy and intellectual disability linked protein Shrm4 interaction with GABABRs shapes inhibitory neurotransmission
Authors: Zapata Jonathan , Moretto Edoardo , Hannan Saad , Murru Luca , Longatti Anna , Mazza Davide , Benedetti Lorena , Fossati Matteo , Heise Christopher , Ponzoni Luisa , Valnegri Pamela , Braida Daniela , Sala Mariaelvina , Francolini Maura , Hildebrand Jeffrey , Kalscheuer Vera , Fanelli Francesca , Sala Carlo , Bettler Bernhard , Bassani Silvia , Smart Trevor G. , Passafaro Maria
Published: March 2017

Shrm4, a protein expressed only in polarized tissues, is encoded by theKIAA1202gene, whose mutations have been linked to epilepsy and intellectual disability. However, a physiological role for Shrm4 in the brain is yet to be established. Here, we report that Shrm4 is localized to synapses where it regulates dendritic spine morphology and interacts with the C terminus of GABABreceptors (GABABRs) to control their cell surface expression and intracellular trafficking via a dynein-dependent mechanism. Knockdown of Shrm4 in rat severely impairs GABABR activity causing increased anxiety-like behaviour and susceptibility to seizures. Moreover, Shrm4 influences hippocampal excitability by modulating tonic inhibition in dentate gyrus granule cells, in a process involving crosstalk between GABABRs and extrasynaptic δ-subunit-containing GABAARs. Our data highlights a role for Shrm4 in synaptogenesis and in maintaining GABABR-mediated inhibition, perturbation of which may be responsible for the involvement of Shrm4 in cognitive disorders and epilepsy.
Disorder-induced single-mode transmission
Authors: Ruocco Giancarlo , Abaie Behnam , Schirmacher Walter , Mafi Arash , Leonetti Marco
Published: March 2017

Localized states trap waves propagating in a disordered potential and play a crucial role in Anderson localization, which is the absence of diffusion due to disorder. Some localized states are barely coupled with neighbours because of differences in wavelength or small spatial overlap, thus preventing energy leakage to the surroundings. This is the same degree of isolation found in the homogeneous core of a single-mode optical fibre. Here we show that localized states of a disordered optical fibre are single mode: the transmission channels possess a high degree of resilience to perturbation and invariance with respect to the launch conditions. Our experimental approach allows identification and characterization of the single-mode transmission channels in a disordered matrix, demonstrating low losses and densely packed single modes. These disordered and wavelength-sensitive channels may be exploited to de-multiplex different colours at different locations.
Correlation of fitness landscapes from three orthologous TIM barrels originates from sequence and structure constraints
Authors: Chan Yvonne H. , Venev Sergey V. , Zeldovich Konstantin B. , Matthews C. Robert
Published: March 2017

Sequence divergence of orthologous proteins enables adaptation to environmental stresses and promotes evolution of novel functions. Limits on evolution imposed by constraints on sequence and structure were explored using a model TIM barrel protein, indole-3-glycerol phosphate synthase (IGPS). Fitness effects of point mutations in three phylogenetically divergent IGPS proteins during adaptation to temperature stress were probed by auxotrophic complementation of yeast with prokaryotic, thermophilic IGPS. Analysis of beneficial mutations pointed to an unexpected, long-range allosteric pathway towards the active site of the protein. Significant correlations between the fitness landscapes of distant orthologues implicate both sequence and structure as primary forces in defining the TIM barrel fitness landscape and suggest that fitness landscapes can be translocated in sequence space. Exploration of fitness landscapes in the context of a protein fold provides a strategy for elucidating the sequence-structure-fitness relationships in other common motifs.
The role of anharmonic phonons in under-barrier spin relaxation of single molecule magnets
Authors: Lunghi Alessandro , Totti Federico , Sessoli Roberta , Sanvito Stefano
Published: March 2017

The use of single molecule magnets in mainstream electronics requires their magnetic moment to be stable over long times. One can achieve such a goal by designing compounds with spin-reversal barriers exceeding room temperature, namely with large uniaxial anisotropies. Such strategy, however, has been defeated by several recent experiments demonstrating under-barrier relaxation at high temperature, a behaviour today unexplained. Here we propose spin–phonon coupling to be responsible for such anomaly. With a combination of electronic structure theory and master equations we show that, in the presence of phonon dissipation, the relevant energy scale for the spin relaxation is given by the lower-lying phonon modes interacting with the local spins. These open a channel for spin reversal at energies lower than that set by the magnetic anisotropy, producing fast under-barrier spin relaxation. Our findings rationalize a significant body of experimental work and suggest a possible strategy for engineering room temperature single molecule magnets.
To address surface reaction network complexity using scaling relations machine learning and DFT calculations
Authors: Ulissi Zachary W. , Medford Andrew J. , Bligaard Thomas , Nørskov Jens K.
Published: March 2017

Surface reaction networks involving hydrocarbons exhibit enormous complexity with thousands of species and reactions for all but the very simplest of chemistries. We present a framework for optimization under uncertainty for heterogeneous catalysis reaction networks using surrogate models that are trained on the fly. The surrogate model is constructed by teaching a Gaussian process adsorption energies based on group additivity fingerprints, combined with transition-state scaling relations and a simple classifier for determining the rate-limiting step. The surrogate model is iteratively used to predict the most important reaction step to be calculated explicitly with computationally demanding electronic structure theory. Applying these methods to the reaction of syngas on rhodium(111), we identify the most likely reaction mechanism. Propagating uncertainty throughout this process yields the likelihood that the final mechanism is complete given measurements on only a subset of the entire network and uncertainty in the underlying density functional theory calculations.
Synthesis and structures of gold and copper carbene intermediates in catalytic amination of alkynes
Authors: Wang Jiwei , Cao Xiaoming , Lv Shichang , Zhang Caiyun , Xu Sheng , Shi Min , Zhang Jun
Published: March 2017

Metal carbenes are often proposed as reactive intermediates in the late transition metal-catalysed transformations of alkynes. Owing to their high reactivity, however, isolation and structural characterization of metal carbene intermediates in these transformations has remained unknown. Herein, we report the isolation of two acyclic gold and copper carbene intermediates in either Au(I)- or Cu(I)-catalysed cyclization of N-alkynyl formamidines through five-exo-dig cyclization. X-ray diffraction, 13C NMR spectra data and computational analyses provide evidence for the formation of a gold carbene intermediate with a carbocation-like electronic character. Using the intrinsic bond orbital (IBO) approach, we also evaluate the π-stabilizing effects of organic substituents at the carbene carbon atom in the gold carbene intermediate. Another rare six-membered copper carbene complex is also obtained through 6-endo-dig cyclization. These metal carbenes have proven reactive toward oxidation. The metal-promoted cyclization of N-alkynyl formamidine provides a facile approach to synthesize metal carbene species.
The SWI/SNF chromatin remodelling complex is required for maintenance of lineage specific enhancers
Authors: Alver Burak H. , Kim Kimberly H. , Lu Ping , Wang Xiaofeng , Manchester Haley E. , Wang Weishan , Haswell Jeffrey R. , Park Peter J. , Roberts Charles W. M.
Published: March 2017

Genes encoding subunits of SWI/SNF (BAF) chromatin remodelling complexes are collectively altered in over 20% of human malignancies, but the mechanisms by which these complexes alter chromatin to modulate transcription and cell fate are poorly understood. Utilizing mouse embryonic fibroblast and cancer cell line models, here we show via ChIP-seq and biochemical assays that SWI/SNF complexes are preferentially targeted to distal lineage specific enhancers and interact with p300 to modulate histone H3 lysine 27 acetylation. We identify a greater requirement for SWI/SNF at typical enhancers than at most super-enhancers and at enhancers in untranscribed regions than in transcribed regions. Our data further demonstrate that SWI/SNF-dependent distal enhancers are essential for controlling expression of genes linked to developmental processes. Our findings thus establish SWI/SNF complexes as regulators of the enhancer landscape and provide insight into the roles of SWI/SNF in cellular fate control.
Geologically-inspired strong bulk ceramics made with water at room temperature
Authors: Bouville Florian , Studart André R.
Published: March 2017

Dense ceramic materials can form in nature under mild temperatures in water. By contrast, man-made ceramics often require sintering temperatures in excess of 1,400 °C for densification. Chemical strategies inspired by biomineralization processes have been demonstrated but remain limited to the fabrication of thin films and particles. Besides biomineralization, the formation of dense ceramic-like materials such as limestone also occurs in nature through large-scale geological processes. Inspired by the geological compaction of mineral sediments in nature, we report a room-temperature method to produce dense and strong ceramics within timescales comparable to those of conventional manufacturing processes. Using nanoscale powders and high compaction pressures, we show that such cold sintering process can be realized with water at room temperature to result in centimetre-sized bulk parts with specific strength that is comparable to, and occasionally even higher than, that of traditional structural materials like concrete.
Shock-transformation of whitlockite to merrillite and the implications for meteoritic phosphate
Authors: Adcock C. T. , Tschauner O. , Hausrath E. M. , Udry A. , Luo S. N. , Cai Y. , Ren M. , Lanzirotti A. , Newville M. , Kunz M. , Lin C.
Published: March 2017

Meteorites represent the only samples available for study on Earth of a number of planetary bodies. The minerals within meteorites therefore hold the key to addressing numerous questions about our solar system. Of particular interest is the Ca-phosphate mineral merrillite, the anhydrous end-member of the merrillite–whitlockite solid solution series. For example, the anhydrous nature of merrillite in Martian meteorites has been interpreted as evidence of water-limited late-stage Martian melts. However, recent research on apatite in the same meteorites suggests higher water content in melts. One complication of using meteorites rather than direct samples is the shock compression all meteorites have experienced, which can alter meteorite mineralogy. Here we show whitlockite transformation into merrillite by shock-compression levels relevant to meteorites, including Martian meteorites. The results open the possibility that at least part of meteoritic merrillite may have originally been H+-bearing whitlockite with implications for interpreting meteorites and the need for future sample return.
Spin excitations and the Fermi surface of superconducting FeS
Authors: Man Haoran , Guo Jiangang , Zhang Rui , Schönemann Rico , Yin Zhiping , Fu Mingxuan , Stone Matthew B. , Huang Qingzhen , Song Yu , Wang Weiyi , Singh David J. , Lochner Felix , Hickel Tilmann , Eremin Ilya , Harriger Leland , Lynn Jeffrey W. , Broholm Collin , Balicas Luis , Si Qimiao , Dai Pengcheng
Published: March 2017

High-temperature superconductivity occurs near antiferromagnetic instabilities and the nematic state. Debate remains on the origin of nematic order in FeSe and its relation with superconductivity. Here, we use transport, neutron scattering and Fermi surface measurements to demonstrate that hydrothermo grown superconducting FeS, an isostructure of FeSe, is a tetragonal paramagnet without nematic order and with a quasiparticle mass significantly reduced from that of FeSe. Only stripe-type spin excitations are observed up to 100 meV. No direct coupling between spin excitations and superconductivity in FeS is found, suggesting that FeS is less correlated and the nematic order in FeSe is due to competing checkerboard and stripe spin fluctuations.
Controllability and observability in complex networks – the effect of connection types
Authors: Leitold Dániel , Vathy-Fogarassy Ágnes , Abonyi János
Published: March 2017

Network theory based controllability and observability analysis have become widely used techniques. We realized that most applications are not related to dynamical systems, and mainly the physical topologies of the systems are analysed without deeper considerations. Here, we draw attention to the importance of dynamics inside and between state variables by adding functional relationship defined edges to the original topology. The resulting networks differ from physical topologies of the systems and describe more accurately the dynamics of the conservation of mass, momentum and energy. We define the typical connection types and highlight how the reinterpreted topologies change the number of the necessary sensors and actuators in benchmark networks widely studied in the literature. Additionally, we offer a workflow for network science-based dynamical system analysis, and we also introduce a method for generating the minimum number of necessary actuator and sensor points in the system.
Human Corneal Endothelial Cell Cultivation From Old Donor Corneas With Forced Attachment
Authors: Parekh Mohit , Ahmad Sajjad , Ruzza Alessandro , Ferrari Stefano
Published: March 2017

Human corneal endothelial cells (HCEnCs) are responsible for maintaining the transparency of the cornea. Damaged or diseased HCEnCs may cause blindness. Replacement of the diseased cells with a healthy donor endothelium is the only currently available treatment. Tissue-engineering can serve as an alternative to conventional donor corneal transplantation. Due to the global shortage of donor corneas, a wide interest in the development of cultured graft substitutes and artificial corneas has increased. Availability of the old donor corneas is higher especially for research. Although it can be proposed as a valuable source for cell culture, its less proliferative capability emerges a challenge for the researchers. This article describes the use of hyaluronic acid (HA) in combination with Rho-kinase inhibitor (ROCK) Y-27632 for the cultivation of HCEnCs from older donor corneas (age > 60 years). Four conditions including and excluding HA + ROCK and its effect on early attachment rates and proliferation was studied on forty-eight corneas. It was observed that HCEnCs reach confluence within 10–15 days when cultured with HA + ROCK. This approach improves the efficiency of cell adhesion due to force attachment. HCEnCs from old donor corneas can be cultured using this method which may further lead to cell-based therapy for treating corneal endothelial dysfunction.
Selenocystine against methyl mercury cytotoxicity in HepG2 cells
Authors: Wang Han , Chen Beibei , He Man , Yu Xiaoxiao , Hu Bin
Published: March 2017

Methyl mercury (MeHg) is a highly toxic substance and the effect of selenium against MeHg toxicity is a hot topic. Until now, no related works have been reported from the view of the point of elemental speciation which is promising to study the mechanism at the molecular level. In this work, to reveal the effect of selenocystine (SeCys2) against MeHg cytotoxicity in HepG2 cells, a comprehensive analytical platform for speciation study of mercury and selenium in MeHg incubated or MeHg and SeCys2 co-incubated HepG2 cells was developed by integrating liquid chromatography (LC) - inductively coupled plasma mass spectrometry (ICP-MS) hyphenated techniques and chip-based pretreatment method. Interesting phenomenon was found that the co-incubation of MeHg with SeCys2 promoted the uptake of MeHg in HepG2 cells, but reduced the cytotoxicity of MeHg. Results obtained by ICP-MS based hyphenated techniques revealed a possible pathway for the incorporation and excretion of mercury species with the coexistence of SeCys2. The formation of MeHg and SeCys2 aggregation promotes the uptake of MeHg; majority of MeHg transforms into small molecular complexes (MeHg-glutathione (GSH) and MeHg-cysteine (Cys)) in HepG2 cells; and MeHg-GSH is the elimination species which results in reducing the cytotoxicity of MeHg.
Unexpected friction behaviours due to capillary and adhesion effects
Authors: Guo Fei , Tian Yu , Liu Ying , Wang Yuming
Published: March 2017

In this present work, we show that pouring water into the interface of SiC sliding against the same SiC material makes the friction coefficient far exceed that governing initial dry friction, and a subsequent load increase causes a dramatic abnormal friction force decrease. With the load further increasing to a critical value, friction force sharply increases again. The small amounts of water in the interface generates a large capillary force, the capillary bridges break to cause micro-separation of interface increase to allow bulk water to enter the friction interface, and a squeezing out of the water film to form a strong adhesion force between SiC-SiC materials, are considered to be responsible for the three stages, respectively.
A selective and label-free strategy for rapid screening of telomere-binding Ligands via fluorescence regulation of DNA/silver nanocluster
Authors: Cheng Rui , Xu Jing , Zhang Xiafei , Shi Zhilu , Zhang Qi , Jin Yan
Published: March 2017

Herein, the conformational switch of G-rich oligonucleotide (GDNA) demonstrated the obvious functional switch of GDNA which was found to significantly affect the fluorescence of the in-situ synthesized DNA/silver nanocluster (DNA-AgNC) in homogeneous solution. We envisioned that the allosteric interaction between GDNA and DNA-AgNC would be possible to be used for screening telomere-binding ligands. A unimolecular probe (12C5TG) is ingeniously designed consisting of three contiguous DNA elements: G-rich telomeric DNA (GDNA) as molecular recognition sequence, T-rich DNA as linker and C-rich DNA as template of DNA-AgNC. The quantum yield and stability of 12C5TG-AgNC is greatly improved because the nearby deoxyguanosines tended to protect DNA/AgNC against oxidation. However, in the presence of ligands, the formation of G-quadruplex obviously quenched the fluorescence of DNA-AgNC. By taking full advantage of intramolecular allosteric effect, telomere-binding ligands were selectively and label-free screened by using deoxyguanines and G-quadruplex as natural fluorescence enhancer and quencher of DNA-AgNC respectively. Therefore, the functional switching of G-rich structure offers a cost-effective, facile and reliable way to screen drugs, which holds a great potential in bioanalysis as well.
Comparison of different critical nitrogen dilution curves for nitrogen diagnosis in rice
Authors: Ata-Ul-Karim Syed Tahir , Zhu Yan , Liu Xiaojun , Cao Qiang , Tian Yongchao , Cao Weixing
Published: March 2017

The critical nitrogen (N) dilution curve is a suitable analytical tool for in-season estimation of N status to implement precision N management. This study was undertaken for a comprehensive comparison of N dilution curves in Japonica and Indica rice to investigate, whether a single curve can be used for both rice ecotypes and to determine the most robust plant index for assessing N status in rice ecotypes. The different N dilution curves were developed based on plant dry matter (PDM), leaf area index (LAI), leaf dry matter (LDM) and stem dry matter (SDM) for N diagnosis in Japonica and Indica rice. The comparison of N dilution curves of two rice ecotypes showed non-significant differences, therefore a single/unified curve can be used to assess plant N status for precision N management in both rice ecotypes. The relationships between PDM based, with LAI, LDM, and SDM based N nutrition index, accumulated N deficit and N requirement, indicated that leaf based approaches could be used as substitutes for PDM approach. The lower coefficient b values of LDM based curve (due to efficient physiological N use in leaves) implied that LDM was the most appropriate approach for developing N curve as compared to other approaches.
Scaling Law of Urban Ride Sharing
Authors: Tachet R. , Sagarra O. , Santi P. , Resta G. , Szell M. , Strogatz S. H. , Ratti C.
Published: March 2017

Sharing rides could drastically improve the efficiency of car and taxi transportation. Unleashing such potential, however, requires understanding how urban parameters affect the fraction of individual trips that can be shared, a quantity that we call shareability. Using data on millions of taxi trips in New York City, San Francisco, Singapore, and Vienna, we compute the shareability curves for each city, and find that a natural rescaling collapses them onto a single, universal curve. We explain this scaling law theoretically with a simple model that predicts the potential for ride sharing in any city, using a few basic urban quantities and no adjustable parameters. Accurate extrapolations of this type will help planners, transportation companies, and society at large to shape a sustainable path for urban growth.
ABO blood types associated with the risk of venous thromboembolism in Han Chinese people: A hospital-based study of 200,000 patients
Authors: Sun Xuefeng , Feng Jun , Wu Wei , Peng Min , Shi Juhong
Published: March 2017

ABO blood types are putatively associated with the risk of venous thromboembolism (VTE), but it is not proved in Chinese people. A large population of Han Chinese patients discharged from Peking Union Medical College Hospital between January 2010 and June 2016 were retrospectively analyzed in a case-control study. A total of 1412 VTE patients were identified from 200,660 discharged Han Chinese patients, including 600 patients with deep vein thrombosis (DVT), 441 patients with pulmonary embolism, and 371 patients with both DVT and pulmonary embolism. The prevalence of non-O blood type was weakly but statistically higher in VTE patients compared with 199,248 non-VTE patients, with an odds ratio (OR) of 1.362 (95% confidence interval [CI], 1.205–1.540). Subgroup analysis showed that the OR for non-O blood type was still increased. It was greater in pre-hospital VTE (OR = 1.464) than that in hospital-acquired VTE (OR = 1.224), and greater in unprovoked VTE (OR = 1.859) than that in provoked VTE (OR = 1.227). The OR for non-O blood type decreased with age in subgroup analysis. These results suggest a weak but statistically significant correlation between non-O blood type and risk of VTE in Han Chinese people.
Data integration aids understanding of butterfly–host plant networks
Authors: Muto-Fujita Ai , Takemoto Kazuhiro , Kanaya Shigehiko , Nakazato Takeru , Tokimatsu Toshiaki , Matsumoto Natsushi , Kono Mayo , Chubachi Yuko , Ozaki Katsuhisa , Kotera Masaaki
Published: March 2017

Although host-plant selection is a central topic in ecology, its general underpinnings are poorly understood. Here, we performed a case study focusing on the publicly available data on Japanese butterflies. A combined statistical analysis of plant–herbivore relationships and taxonomy revealed that some butterfly subfamilies in different families feed on the same plant families, and the occurrence of this phenomenon more than just by chance, thus indicating the independent acquisition of adaptive phenotypes to the same hosts. We consequently integrated plant–herbivore and plant–compound relationship data and conducted a statistical analysis to identify compounds unique to host plants of specific butterfly families. Some of the identified plant compounds are known to attract certain butterfly groups while repelling others. The additional incorporation of insect–compound relationship data revealed potential metabolic processes that are related to host plant selection. Our results demonstrate that data integration enables the computational detection of compounds putatively involved in particular interspecies interactions and that further data enrichment and integration of genomic and transcriptomic data facilitates the unveiling of the molecular mechanisms involved in host plant selection.
Chiral magnetoresistance in the Weyl semimetal NbP
Authors: Niemann Anna Corinna , Gooth Johannes , Wu Shu-Chun , Bäßler Svenja , Sergelius Philip , Hühne Ruben , Rellinghaus Bernd , Shekhar Chandra , Süß Vicky , Schmidt Marcus , Felser Claudia , Yan Binghai , Nielsch Kornelius
Published: March 2017

NbP is a recently realized Weyl semimetal (WSM), hosting Weyl points through which conduction and valence bands cross linearly in the bulk and exotic Fermi arcs appear. The most intriguing transport phenomenon of a WSM is the chiral anomaly-induced negative magnetoresistance (NMR) in parallel electric and magnetic fields. In intrinsic NbP the Weyl points lie far from the Fermi energy, making chiral magneto-transport elusive. Here, we use Ga-doping to relocate the Fermi energy in NbP sufficiently close to the W2 Weyl points, for which the different Fermi surfaces are verified by resultant quantum oscillations. Consequently, we observe a NMR for parallel electric and magnetic fields, which is considered as a signature of the chiral anomaly in condensed-matter physics. The NMR survives up to room temperature, making NbP a versatile material platform for the development of Weyltronic applications.
Phage-host interactions in Streptococcus thermophilus: Genome analysis of phages isolated in Uruguay and ectopic spacer acquisition in CRISPR array
Authors: Achigar Rodrigo , Magadán Alfonso H. , Tremblay Denise M. , Julia Pianzzola María , Moineau Sylvain
Published: March 2017

Three cos-type virulent Streptococcus thermophilus phages were isolated from failed mozzarella production in Uruguay. Genome analyses showed that these phages are similar to those isolated elsewhere around the world. The CRISPR1 and CRISPR3 arrays of the three S. thermophilus host strains from Uruguay were also characterized and similarities were noted with previously described model strains SMQ-301, LMD-9 and DGCC7710. Spontaneous bacteriophage-insensitive S. thermophilus mutants (BIMs) were obtained after challenging the phage-sensitive wild-type strain Uy02 with the phage 128 and their CRISPR content was analyzed. Analysis of 23 BIMs indicated that all of them had acquired at least one new spacer in their CRISPR1 array. While 14 BIMs had acquired spacer at the 5′-end of the array, 9 other BIMs acquired a spacer within the array. Comparison of the leader sequence in strains Uy02 and DGCC7710 showed a nucleotide deletion at position -1 in Uy02, which may be responsible for the observed ectopic spacer acquisition. Analysis of the spacer sequences upstream the newly acquired ectopic spacer indicated presence of a conserved adenine residue at position -2. This study indicates that natural strains of S. thermophilus can also acquire spacers within a CRISPR array.
Formation and evolution of orientation-specific CO2 chains on nonpolar ZnO(10͞10) surfaces
Authors: Cao Yunjun , Yu Min , Qi Shandong , Wang Tingting , Huang Shiming , Hu Shujun , Xu Mingchun , Yan Shishen
Published: March 2017

Clarifying the fundamental adsorption and diffusion process of CO2 on single crystal ZnO surfaces is critical in understanding CO2 activation and transformation over ZnO-based catalysts. By using ultrahigh vacuum-Fourier transform infrared spectroscopy (UHV-FTIRS), we observed the fine structures of CO2 vibrational bands on ZnO(10"Equation missing"0) surfaces, which are the combinations of different vibrational frequencies, originated from CO2 monomer, dimer, trimer and longer polymer chains along [0001] direction according to the density functional theory calculations. Such novel chain adsorption mode results from the relatively large attractive interaction between CO2 and Zn3c atoms in [0001] direction. Further experiments indicate that the short chains at low coverage evolve into long chains through Ostwald ripening by annealing. At higher CO2 coverage (0.7 ML), the as-grown local (2 × 1) phase of chains first evolve into an unstable local (1 × 1) phase below 150 K, and then into a stable well-defined (2 × 1) phase above 150 K.
SWCNT Photocatalyst for Hydrogen Production from Water upon Photoexcitation of (8, 3) SWCNT at 680-nm Light
Authors: Murakami Noritake , Tango Yuto , Miyake Hideaki , Tajima Tomoyuki , Nishina Yuta , Kurashige Wataru , Negishi Yuichi , Takaguchi Yutaka
Published: March 2017

Single-walled carbon nanotubes (SWCNTs) are potentially strong optical absorbers with tunable absorption bands depending on their chiral indices (n, m). Their application for solar energy conversion is difficult because of the large binding energy (>100 meV) of electron-hole pairs, known as excitons, produced by optical absorption. Recent development of photovoltaic devices based on SWCNTs as light-absorbing components have shown that the creation of heterojunctions by pairing chirality-controlled SWCNTs with C60 is the key for high power conversion efficiency. In contrast to thin film devices, photocatalytic reactions in a dispersion/solution system triggered by the photoexcitation of SWCNTs have never been reported due to the difficulty of the construction of a well-ordered surface on SWCNTs. Here, we show a clear-cut example of a SWCNT photocatalyst producing H2 from water. Self-organization of a fullerodendron on the SWCNT core affords water-dispersible coaxial nanowires possessing SWCNT/C60 heterojunctions, of which a dendron shell can act as support of a co-catalyst for H2 evolution. Because the band offset between the LUMO levels of (8, 3)SWCNT and C60 satisfactorily exceeds the exciton binding energy to allow efficient exciton dissociation, the (8, 3)SWCNT/fullerodendron coaxial photocatalyst shows H2-evolving activity (QY = 0.015) upon 680-nm illumination, which is E22 absorption of (8, 3) SWCNT.
Graphene Visualizes the Ion Distribution on Air-Cleaved Mica
Authors: Bampoulis Pantelis , Sotthewes Kai , Siekman Martin H. , Zandvliet Harold J. W. , Poelsema Bene
Published: March 2017

The distribution of potassium (K+) ions on air-cleaved mica is important in many interfacial phenomena such as crystal growth, self-assembly and charge transfer on mica. However, due to experimental limitations to nondestructively probe single ions and ionic domains, their exact lateral organization is yet unknown. We show, by the use of graphene as an ultra-thin protective coating and scanning probe microscopies, that single potassium ions form ordered structures that are covered by an ice layer. The K+ ions prefer to minimize the number of nearest neighbour K+ ions by forming row-like structures as well as small domains. This trend is a result of repulsive ionic forces between adjacent ions, weakened due to screening by the surrounding water molecules. Using high resolution conductive atomic force microscopy maps, the local conductance of the graphene is measured, revealing a direct correlation between the K+ distribution and the structure of the ice layer. Our results shed light on the local distribution of ions on the air-cleaved mica, solving a long-standing enigma. They also provide a detailed understanding of charge transfer from the ionic domains towards graphene.
Formation mechanisms of Fe3−xSnxO4 by a chemical vapor transport (CVT) process
Authors: Su Zijian , Zhang Yuanbo , Liu Bingbing , Chen Yingming , Li Guanghui , Jiang Tao
Published: March 2017

Our former study reported that Fe-Sn spinel (Fe3−xSnxO4) was easily formed when SnO2 and Fe3O4 were roasted under CO-CO2 atmosphere at 900–1100 °C. However, the formation procedure is still unclear and there is a lack of theoretical research on the formation mechanism of the Fe-Sn spinel. In this work, the reaction mechanisms between SnO2 and Fe3O4 under CO-CO2 atmosphere were determined using XRD, VSM, SEM-EDS, XPS, etc. The results indicated that the formation of Fe3−xSnxO4 could be divided into four steps: reduction of SnO2 to solid phase SnO, volatilization of gaseous SnO, adsorption of gaseous SnO on the surface of Fe3O4, and redox reaction between SnO and Fe3O4. During the roasting process, part of Fe3+ in Fe3O4 was reduced to Fe2+ by gaseous SnO, and meanwhile Sn2+ was oxidized to Sn4+ and entered into Fe3−xSnxO4. The reaction between SnO2 and Fe3O4 could be summarized as Fe3O4 + xSnO(g) → Fe3−xSnxO4 (x = 0–1.0).
Network theory may explain the vulnerability of medieval human settlements to the Black Death pandemic
Authors: Gómez José M. , Verdú Miguel
Published: March 2017

Epidemics can spread across large regions becoming pandemics by flowing along transportation and social networks. Two network attributes, transitivity (when a node is connected to two other nodes that are also directly connected between them) and centrality (the number and intensity of connections with the other nodes in the network), are widely associated with the dynamics of transmission of pathogens. Here we investigate how network centrality and transitivity influence vulnerability to diseases of human populations by examining one of the most devastating pandemic in human history, the fourteenth century plague pandemic called Black Death. We found that, after controlling for the city spatial location and the disease arrival time, cities with higher values of both centrality and transitivity were more severely affected by the plague. A simulation study indicates that this association was due to central cities with high transitivity undergo more exogenous re-infections. Our study provides an easy method to identify hotspots in epidemic networks. Focusing our effort in those vulnerable nodes may save time and resources by improving our ability of controlling deadly epidemics.
Ischemic injury leads to extracellular matrix alterations in retina and optic nerve
Authors: Reinhard Jacqueline , Renner Marina , Wiemann Susanne , Shakoor Daniel A. , Stute Gesa , Dick H. Burkhard , Faissner Andreas , Joachim Stephanie C.
Published: March 2017

Retinal ischemia occurs in a variety of eye diseases. Restrained blood flow induces retinal damage, which leads to progressive optic nerve degeneration and vision loss. Previous studies indicate that extracellular matrix (ECM) constituents play an important role in complex tissues, such as retina and optic nerve. They have great impact on de- and regeneration processes and represent major candidates of central nervous system glial scar formation. Nevertheless, the importance of the ECM during ischemic retina and optic nerve neurodegeneration is not fully understood yet. In this study, we analyzed remodeling of the extracellular glycoproteins fibronectin, laminin, tenascin-C and tenascin-R and the chondroitin sulfate proteoglycans (CSPGs) aggrecan, brevican and phosphacan/RPTPβ/ζ in retinae and optic nerves of an ischemia/reperfusion rat model via quantitative real-time PCR, immunohistochemistry and Western blot. A variety of ECM constituents were dysregulated in the retina and optic nerve after ischemia. Regarding fibronectin, significantly elevated mRNA and protein levels were observed in the retina following ischemia, while laminin and tenascin-C showed enhanced immunoreactivity in the optic nerve after ischemia. Interestingly, CSPGs displayed significantly increased expression levels in the optic nerve. Our study demonstrates a dynamic expression of ECM molecules following retinal ischemia, which strengthens their regulatory role during neurodegeneration.
In Situ Activation of Pituitary-Infiltrating T Lymphocytes in Autoimmune Hypophysitis
Authors: Lin Han-Huei , Gutenberg Angelika , Chen Tzu-Yu , Tsai Nu-Man , Lee Chia-Jung , Cheng Yu-Che , Cheng Wen-Hui , Tzou Ywh-Min , Caturegli Patrizio , Tzou Shey-Cherng
Published: March 2017

Autoimmune hypophysitis (AH) is a chronic inflammatory disease characterized by infiltration of T and B lymphocytes in the pituitary gland. The mechanisms through which infiltrating lymphocytes cause disease remain unknown. Using a mouse model of AH we assessed whether T lymphocytes undergo activation in the pituitary gland. Infiltrating T cells co-localized with dendritic cells in the pituitary and produced increased levels of interferon-γ and interleukin-17 upon stimulation in vitro. Assessing proliferation of CD3- and B220-postive lymphocytes by double immunohistochemistry (PCNA-staining) and flow cytometry (BrdU incorporation) revealed that a discrete proportion of infiltrating T cells and B cells underwent proliferation within the pituitary parenchyma. This proliferation persisted into the late disease stage (day 56 post-immunization), indicating the presence of a continuous generation of autoreactive T and B cells within the pituitary gland. T cell proliferation in the pituitary was confirmed in patients affected by autoimmune hypophysitis. In conclusion, we show that pituitary-infiltrating lymphocytes proliferatein situduring AH, providing a previously unknown pathogenic mechanism and new avenues for treatment.
Whole genome sequences of three Clade 3 Clostridium difficile strains carrying binary toxin genes in China
Authors: Chen Rong , Feng Yu , Wang Xiaohui , Yang Jingyu , Zhang Xiaoxia , Lü Xiaoju , Zong Zhiyong
Published: March 2017

Clostridium difficile consists of six clades but studies on Clade 3 are limited. Here, we report genome sequences of three Clade 3 C. difficile strains carrying genes encoding toxin A and B and the binary toxin. Isolates 103 and 133 (both of ST5) and isolate 106 (ST285) were recovered from three ICU patients. Whole genome sequencing using HiSeq 2500 revealed 4.1-Mb genomes with 28–29% GC content. There were ≥1,104 SNP between the isolates, suggesting they were not of a single clone. The toxin A and B gene-carrying pathogenicity locus (PaLoc) of the three isolates were identical and had the insertion of the transposon Tn6218. The genetic components of PaLoc among Clade 3 strains were the same with only a few nucleotide mutations and deletions/insertions, suggesting that the Tn6218 insertion might have occurred before the divergence within Clade 3. The binary toxin-genes carrying CDT locus (CdtLoc) of the three isolates were identical and were highly similar to those of other Clade 3 strains, but were more divergent from those of other clades. In conclusion, Clade 3 has an unusual clade-specific PaLoc characteristic of a Tn6218 insertion which appears to be the main feature to distinguish Clade 3 from other C. difficile.
Facile approach to fabricate waterborne polyaniline nanocomposites with environmental benignity and high physical properties
Authors: Wang Haihua , Wen Huan , Hu Bin , Fei Guiqiang , Shen Yiding , Sun Liyu , Yang Dong
Published: March 2017

Waterborne polyaniline (PANI) dispersion has got extensive attention due to its environmental friendliness and good processability, whereas the storage stability and mechanical property have been the challenge for the waterborne PANI composites. Here we prepare for waterborne PANI dispersion through the chemical graft polymerisation of PANI into epichlorohydrin modified poly (vinyl alcohol) (EPVA). In comparison with waterborne PANI dispersion prepared through physical blend and in situ polymerisation, the storage stability of PANI-g-EPVA dispersion is greatly improved and the dispersion keeps stable for one year. In addition, the as-prepared PANI-g-EPVA film displays more uniform and smooth morphology, as well as enhanced phase compatibility. PANI is homogeneously distributed in the EPVA matrix on the nanoscale. PANI-g-EPVA displays different morphology at different aniline content. The electrical conductivity corresponds to 7.3 S/cm when only 30% PANI is incorporated into the composites, and then increases up to 20.83 S/cm with further increase in the aniline content. Simultaneously, the tensile strength increases from 35 MPa to 64 MPa. The as-prepared PANI-g-EPVA dispersion can be directly used as the conductive ink or coatings for cellulose fibre paper to prepare flexible conductive paper with high conductivity and mechanical property, which is also suitable for large scalable production.