bluuebunny/crossref_metadata_2025 huggingface dataset:
Modern Nonparametric Statistics: Going Beyond Asymptotic Minimax
Authors: Birgé Lucien , Johnstone Iain M. , Spokoiny Vladimir
Published: September 2010

During the years 1975-1990 a major emphasis in nonparametric estimation was put on computing the asymptotic minimax risk for many classes of functions. Modern statistical practice indicates some serious limitations of the asymptotic minimax approach and calls for some new ideas and methods which can cope with the numerous challenges brought to statisticians by modern sets of data.
Hookworm (Necator americanus) Larval Enzymes Disrupt Human Vascular Endothelium
Authors: Souadkia Nahed , Brown Alan , Leach Lopa , Pritchard David I.
Published: September 2010

Knowledge of the molecular mechanisms used by Necator americanus larvae to penetrate the human skin and the vasculature would aid the development of effective vaccines against this important pathogen. In this work, the impact of N. americanus exsheathing fluid (EF) and excretory/secretory products (ES) on the endothelial barrier was examined using human umbilical vein endothelial cells (HUVEC). Cellular responses were assessed by investigating molecular changes at cell–cell junctions and by determining levels of secreted IL-6, IL-8, and vascular endothelial growth factor (VEGF) in the culture medium. It would appear that a repertoire of larval proteases caused a dose-related increase in endothelial permeability as characterized by a decrease in monolayer resistance with increased permeation of tracer-albumin. These barrier changes were associated with disruption of junctional vascular endothelial cadherin (VE-cadherin) and F-actin and an increase in endothelial secretion of IL-6 and IL-8. Our data suggest that larval proteases play an important role in negotiating the endothelium.
Reactions Following Completion of 1 and 2 Year Multidrug Therapy (MDT)
Authors: Balagon Ma. Victoria F. , Gelber Robert H. , Abalos Rodolfo M. , Cellona Roland V.
Published: September 2010

We evaluated the incidence, severity, and duration of reactional states in 139 multibacillary (MB) leprosy patients in the first 2 years after the completion of the 1 year regimen of multidrug therapy (MDT) currently recommended by the World Health Organization (WHO) and compared those findings with 295 MB leprosy patients treated with the same regimen previously recommended for 2 years. During the first year after the completion of 1 year MDT, patients experienced 1 or more reactional states 27% of the time, the vast majority being lepra type 1 reactions (reversal reactions, RR), whereas patients who received 2 year MDT experienced a reactional state during that time period only 8% of the time (P < 0.001). Furthermore, during the first year after the completion of therapy, and during the first 2 years, both the number of reactional states and reversal reactions were significantly (P ≤ 0.004) more frequent, severe, of longer duration, and more commonly associated with neuritis.
Phylogenetic Analysis of 56-kDa Type-Specific Antigen Gene of Orientia tsutsugamushi Isolates in Taiwan
Authors: Lu Hsiu-Ying , Tsai Kun-Hsien , Yu Sheng-Kai , Cheng Chia-Hsin , Yang Jr-Shiang , Su Chien-Ling , Hu Huai-Chin , Wang Hsi-Chieh , Huang Jyh-Hsiung , Shu Pei-Yun
Published: September 2010

Scrub typhus is a rickettsial disease transmitted to humans through the bite of chigger mites infected with Orientia tsutsugamushi, and is an endemic disease in Taiwan. To elucidate the molecular epidemiology of O. tsutsugamushi, the complete open reading frame of the 56-kDa type-specific antigen gene sequence of strains isolated from scrub typhus patients were determined and analyzed. A total of 116 isolates of O. tsutsugamushi were successfully isolated from patients infected in diverse geographic origins including Taiwan and three offshore islets, Kinmen, Matsu, and Penghu between May 2006 and December 2007. Sequence analysis revealed that 22 distinct sequence types could be identified that were broadly distributed in different clusters of the phylogenetic tree. Most of the isolates belong to Karp, Kawasaki, and Kuroki genotypes and are closely related to strains from Thailand, Japan, and Korea, whereas unique isolates different from other countries were also found in Taiwan. Distinct seasonal distributions were found in different sequence types. Some sequence types caused disease in the cold season, whereas others caused disease in the warm season.
Dengue Fever in Mainland China
Authors: Wu Jin-Ya , Lun Zhao-Rong , James Anthony A. , Chen Xiao-Guang
Published: September 2010

Dengue is an acute emerging infectious disease transmitted by Aedes mosquitoes and has become a serious global public health problem. In mainland China, a number of large dengue outbreaks with serious consequences have been reported as early as 1978. In the three decades from 1978 to 2008, a total of 655,324 cases were reported, resulting in 610 deaths. Since the 1990s, dengue epidemics have spread gradually from Guangdong, Hainan, and Guangxi provinces in the southern coastal regions to the relatively northern and western regions including Fujian, Zhejiang, and Yunnan provinces. As the major transmission vectors of dengue viruses, the biological behavior and vectorial capacity of Aedes mosquitoes have undergone significant changes in the last two decades in mainland China, most likely the result of urbanization and global climate changes. In this review, we summarize the geographic and temporal distributions, the serotype and genotype distributions of dengue viruses in mainland China, and analyze the current status of surveillance and control of vectors for dengue transmission.
Prolonged Co-circulation of Two Distinct Dengue Virus Type 3 Lineages in the Hyperendemic Area of Medellín, Colombia
Authors: Ospina Marta C. , Diaz Francisco J. , Osorio Jorge E.
Published: September 2010

During the past two decades, Dengue virus-3 (DENV-3) has re-emerged in the Western Hemisphere causing significant epidemics of dengue fever (DF) and dengue hemorrhagic fever (DHF). In an effort to understand the molecular evolution of DENV-3 and their relationships to other DENV-3 circulating in the western hemisphere, we conducted a phylogenetic study on DENV-3 isolates made between 2002 and 2007 in the metropolitan area of Medellín, Colombia. An unexpected co-circulation of two different variants of DENV-3 subtype III during at least 5 years in Medellín was found. In addition, a more complete analysis of DENV-3 viruses isolated in other South American regions revealed the existence of three different subtype III lineages, all derived from independent introductions. This study documents significant genetic diversity of circulating viruses within the same subtype and an unusual capacity of the population of this city to support continuous circulation of multiple variants of dengue virus.
Aestivation of the African Malaria Mosquito, Anopheles gambiae in the Sahel
Authors: Lehmann Tovi , Dao Adama , Yaro Alpha Seydou , Adamou Abdoulaye , Kassogue Yaya , Diallo Moussa , Sékou Traoré , Coscaron-Arias Cecilia
Published: September 2010

The African malaria mosquito, Anopheles gambiae, inhabits diverse environments including dry savannas, where surface waters required for larval development are absent for 4–8 months per year. Under such conditions, An. gambiae virtually disappears. Whether populations survive the long dry season by aestivation (a dormant state promoting extended longevity during the summer) or are reestablished by migrants from distant locations where larval sites persist has remained an enigma for over 60 years. Resolving this question is important, because fragile dry season populations may be more susceptible to control. Here, we show unequivocally that An. gambiae aestivates based on a demographic study and a mark release–recapture experiment spanning the period from the end of one wet season to the beginning of the next. During the dry season, An. gambiae was barely detectable in Sahelian villages of Mali. Five days after the first rain, before a new generation of adults could be produced, mosquito abundance surged 10-fold, implying that most mosquitoes were concealed locally until the rain. Four days after the first rain, a marked female An. gambiae s.s. was recaptured. Initially captured, marked, and released at the end of the previous wet season, she has survived the 7-month-long dry season. These results provide evidence that An. gambiae persists throughout the dry season by aestivation and open new questions for mosquito and parasite research. Improved malaria control by targeting aestivating mosquitoes using existing or novel strategies may be possible.
Mutations in the Antifolate-Resistance-Associated Genes Dihydrofolate Reductase and Dihydropteroate Synthase in Plasmodium vivax Isolates from Malaria-Endemic Countries
Authors: Lu Feng , Lim Chae Seung , Nam Deok Hwa , Kim Kwonkee , Lin Khin , Kim Tong-Soo , Lee Hyeong-Woo , Chen Jun-Hu , Wang Yue , Sattabongkot Jetsumon , Han Eun-Taek
Published: September 2010

Parasite dihydrofolate reductase (DHFR) and dihydropteroate synthase (DHPS) are known target enzymes of antifolate drugs used for the treatment and prophylaxis of persons with malaria. We sequenced the Plasmodium vivax dihydrofolate reductase (pvdhfr) and dihydropteroate synthase (pvdhps) genes to examine the prevalence and extent of point mutations in isolates from malaria-endemic countries. Double mutations (S58R and S117N) or quadruple mutations (F57L/I, S58R, T61M, and S117T) in the pvdhfr gene were found in isolates from Thailand (96.4%) and Myanmar (71.4%), but in only one isolate (1.0%) from Korea, where sulfadoxine-pyrimethamine has never been used. The pvdhfr point mutations correlated strongly with the pvdhps point mutations and ranged from single to triple mutations (S382A, A383G, and A553G), among isolates from Thailand, Myanmar, and Korea. These findings suggests that the prevalence of mutations in pvdhfr and pvdhps in P. vivax isolates from different malaria-endemic countries is associated with selection pressure imposed by sulfadoxine-pyrimethamine.
Spatial and Temporal Variation in Vector Competence of Culex pipiens and Cx. restuans Mosquitoes for West Nile Virus
Authors: Kilpatrick A. Marm , Fonseca Dina M. , Ebel Gregory D. , Reddy Michael R. , Kramer Laura D.
Published: September 2010

Vector competence, the probability that a vector will transmit a pathogen after feeding on an infected host, is known to vary among vector species, populations, days since feeding, and temperature during the extrinsic incubation period. However, the extent of spatio-temporal variability and consistency in vector competence of populations is not known. We examined vector competence of Culex pipiens Linnaeus and Cx. restuans Theobald mosquitoes for West Nile virus collected over 3 years from 17 sites to measure spatial and temporal scales of variation in vector competence. We found extreme variation with 0–52% of mosquitoes transmitting West Nile virus at a single site between different sampling periods, and similar variation across populations. However, we also found that within a smaller geographic range, vector competence varied somewhat synchronously, suggesting that environmental and population genetic factors might influence vector competence. These results highlight the spatio-temporal variability in vector competence and the role of local processes.
Detection of Early and Single Infections of Schistosoma japonicum in the Intermediate Host Snail, Oncomelania hupensis, by PCR and Loop-Mediated Isothermal Amplification (LAMP) Assay
Authors: Kumagai Takashi , Furushima-Shimogawara Rieko , Ohmae Hiroshi , Wang Tian-Ping , Lu Shaohong , Chen Rui , Wen Liyong , Ohta Nobuo
Published: September 2010

Polymerase chain reaction (PCR) with the specific primer set amplifying 28S ribosomal DNA (rDNA) of Schistosoma japonicum was able to detect genomic DNA of S. japonicum, but not S. mansoni, at 100 fg. This procedure enabled us to detect the DNA from a single miracidium and a snail infected with one miracidium at just 1 day after infection. We compared these results with those from loop-mediated isothermal amplification (LAMP) targeting 28S rDNA and found similar results. The LAMP could amplify the specific DNA from a group of 100 normal snails mixed with one infected snail A PCR screening of infected snails from endemic regions in Anhui Province revealed schistosomal DNA even in snails found negative by microscopy. PCR and LAMP show promise for monitoring the early infection rate in snails, and they may be useful for predicting the risk of infection in the endemic places.
Effects of Annual Mass Treatment with Ivermectin for Onchocerciasis on the Prevalence of Intestinal Helminths
Authors: Gutman Julie , Emukah Emmanuel , Okpala Njideka , Okoro Chinyere , Obasi Andrew , Miri Emmanuel S. , Richards Frank O.
Published: September 2010

We evaluated the effect of annual ivermectin (IV) distribution for onchocerciasis on the prevalence of soil transmitted helminth (STH) infections in school-aged (SAC) and preschool-aged (PAC) children by comparing children in villages that had received treatment for 13 years to those from socioeconomically similar villages in untreated areas. We enrolled 1,031 SAC and 211 PAC for Kato Katz examinations. Treated areas had a lower prevalence of Ascaris (SAC: 3% versus 12%, P < 0.0001; PAC: 3% versus 10%, P < 0.051) and Trichuris (SAC: 6% versus 10%, P = 0.012; PAC: 1% versus 8%, P = 0.019), but not hookworm (SAC: 38% versus 42%, P = 0.20; PAC: 21% versus 27%, P = 0.30). The prevalence of Ascaris or Trichuris in treated areas was below the WHO threshold for mass antihelminthic treatment (MDA), but not for hookworm. We conclude that benzimidazole MDA in IV treatment areas is indicated to effectively control hookworm.
A Comparison of Methods to Detect and Quantify the Markers of Antimalarial Drug Resistance
Authors: Hastings Ian M. , Nsanzabana Christian , Smith Tom A.
Published: September 2010

We compare, contrast, and evaluate methods to quantify genetic markers of antimalarial drug resistance. Frequency estimates should be reported along with crude prevalence. There are four main potential methods to estimate frequencies in blood samples: simple counting of single nucleotide polymorphisms (SNPs) and haplotypes in samples with multiplicity of infection (MOI) = 1; SNP counting in samples with MOI ≤ 2; SNP and haplotypes counting in samples with unambiguous genotypes; statistical inference using SNP and MOI data from all samples. Large differences between the methods became apparent when analyzing field data with high MOI. Simple counting dramatically reduced sample size and estimate precision, and we show that analysis of unambiguous samples is biased, leaving maximum likelihood or similar statistical inference as the only practical option. It is essential to account for genotyping missing minor clones; ignoring this phenomenon resulted in a 2-fold underestimation of SNPs and haplotypes present at low frequencies.
A Recombinant AeDNA Containing the Insect-Specific Toxin, BmK IT1, Displayed an Increasing Pathogenicity on Aedes albopictus
Authors: Gu Jin-Bao , Dong Yun-Qiao , Peng Hong-Juan , Chen Xiao-Guang
Published: September 2010

The Aedes aegypti densovirus (AeDNV) has previously shown potential in mosquito control. To improve its efficacy as a biopesticide, the gene for an excitatory insect-specific toxin from Buthus martensii Karsch (BmK IT1) was inserted into the AeDNV genome and cloned into pUCA plasmid. The coding sequence for green fluorescent protein was ligated to the C-terminus of the BmK IT1 gene as a screening marker. Recombinant and helper plasmids were cotransfected into C6/36 cells; wild-type viruses were the controls. The recombinant viruses were identified and quantified by real-time polymerase chain reaction and exposed to Ae. albopictus larvae for the evaluation of its bioinsecticidal activity. LT50 and LD50 bioassays showed that the recombinant AeDNV had stronger and faster pathogenic effects on Ae. albopictus than the wild-type virus. This is the first report on the recombinant AeDNA containing the insect-specific toxin, BmK IT1, which may be used to develop a novel type of insecticide.
Prevalence and Risk Factors of Toxoplasmosis among Pregnant Women in Fortaleza, Northeastern Brazil
Authors: Sroka Susann , Bartelheimer Nina , Winter Andreas , Heukelbach Jörg , Ariza Liana , Ribeiro Heliane , Oliveira Fabíola Araujo , Queiroz Ajax Jose Nogueira , Alencar Carlos , Liesenfeld Oliver
Published: September 2010

We determined the seroprevalence of Toxoplasma gondii and associated risk factors among 963 pregnant women attending an obstetric hospital in Fortaleza, Brazil. Seroprevalences of IgG and IgM against T. gondii were 68.6% (95% confidence interval [CI] = 65.6–71.6%) and 0.5% (95% CI = 0.06–1.0%), respectively. Seroprevalence of IgG was high in women less than 25 years of age (91.7%) and in low-income women (odds Ratio [OR] = 1.40, 95% CI = 1.02–1.90). Multivariate regression analysis showed that consumption of homemade water ice (adjusted OR = 1.49, 95% CI = 1.09–2.04), vegetables washed with untreated water (adjusted OR = 1.43, 95% CI = 1.05–1.94), consumption of chicken (adjusted OR = 1.49, 95% CI = 1.12–2.0), and dog ownership (adjusted OR= 1.46, 95% CI = 1.07–1.98) were factors associated with IgG seropositivity. Young women in northeastern Brazil living under poor socioeconomic conditions are at highest risk for acquiring infection with T. gondii. Oocyst contamination of water and soil must be addressed in future prevention strategies.
Quantitative Analysis of Replication and Tropisms of Dengue Virus Type 2 in Aedes albopictus
Authors: Zhang Meichun , Zheng Xiaoying , Wu Yu , Gan Ming , He Ai , Li Zhuoya , Liu Jing , Zhan Ximei
Published: September 2010

Dengue virus serotype 2 (DENV-2) RNA replication profiles and tropisms were studied by using quantitative RT-PCR (q-RTPCR) in intrathoracically infected Aedes albopictus. The virus RNA replication profiles were diverse in mosquito organs. In fat body, brain, salivary gland, and malpighian tubes, it peaked at 8, 23, 23, and 27 days post-infection, respectively, and then, all declined. In midgut, it increased all the time and had no trend of decline. In ovary, it had no apparent increase. Subsequent Western blotting of DENV-2 E protein had similar results. Using ribosomal protein 7 (rpS7) as an internal control, we found that, in salivary gland, brain, fat body, and midgut, the average DENV-2 RNA levels (DENV-2 RNA/rpS7 mRNA) were 1,028, 464, 5.6, and 6.2, respectively; in malpighian tubes, it was 1, and in ovary, it was far less than 1. These results suggest that infection profiles and tropism of DENV-2 RNA in Ae. albopictus organs are significantly different.
Weight-Loss Programs in Convenient Care Clinics: A Prospective Cohort Study
Authors: Wollner Samuel , Blackburn David , Spellman Kristina , Khaodhiar Lalita , Blackburn George L.
Published: September 2010

Purpose.

Assess whether a convenient care clinic (CCC) medical weight-loss program can promote weight loss.

Design.

Prospective cohort study with follow-up at 10 weeks.

Setting.

A CCC (Lindora Health Clinic) weight-loss program (Lean for Life) based in a retail pharmacy (Rite Aid Pharmacy) in Costa Mesa, California.

Subjects.

The first 100 people to purchase the weight-loss program.

Intervention.

A 10-week, $465 medical weight-loss program with individual counseling sessions; a hypocaloric diet of 900 to 1200 kcal/day (25%–30% carbohydrates, 40% protein, 25% fat); and adjunctive pharmacologic treatment, if necessary.

Measures.

We collected data on age, height, weight, visits per week, medication use, comorbid conditions, and weight change.

Analysis.

Data were analyzed based on length of enrollment and mean percent weight loss. Statistical tests used were t-test and Spearman rank correlation test.

Results.

Eighty-six subjects had valid data entries for weight change over the 10-week period. Average age was 51.6 years; mean starting body mass index was 30.3. Thirty patients participated for 0 to 4 weeks, 30 for 4 to 9 weeks, and 26 for 10 weeks. Mean percent weight changes for the 0 to 4, 5 to 9, and 10-week groups were −1.6, −6.0, and −8.1, respectively. Forty-five (45%) of the patients achieved medically significant weight loss (≥ 5%).

Conclusion.

The study shows that a medical weight-loss program offered at a CCC in a retail pharmacy can produce medically significant weight loss of ≥5%. Further research of collaborations between the retail and medical weight-loss industries is warranted. Study design limitations included selection bias and confounding variables other than the weight-loss program.
Optical extinction by upper tropospheric/stratospheric aerosols and clouds: GOMOS observations for the period 2002–2008
Authors: Vanhellemont F. , Fussen D. , Mateshvili N. , Tétard C. , Bingen C. , Dekemper E. , Loodts N. , Kyrölä E. , Sofieva V. , Tamminen J. , Hauchecorne A. , Bertaux J.-L. , Dalaudier F. , Blanot L. , Fanton d'Andon O. , Barrot G. , Guirlet M. , Fehr T. , Saavedra L.
Published: September 2010

Abstract. Although the retrieval of aerosol extinction coefficients from satellite remote measurements is notoriously difficult (in comparison with gaseous species) due to the lack of typical spectral signatures, important information can be obtained. In this paper we present an overview of the current operational nighttime UV/Vis aerosol extinction profile results for the GOMOS star occultation instrument, spanning the period from August 2002 to May 2008. Some problems still remain, such as the ones associated with incomplete scintillation correction and the aerosol spectral law implementation, but good quality extinction values are obtained at a wavelength of 500 nm. Typical phenomena associated with atmospheric particulate matter in the Upper Troposphere/Lower Stratosphere (UTLS) are easily identified: Polar Stratospheric Clouds, tropical subvisual cirrus clouds, background stratospheric aerosols, and post-eruption volcanic aerosols (with their subsequent dispersion around the globe). For the first time, we show comparisons of GOMOS 500 nm particle extinction profiles with the ones of other satellite occultation instruments (SAGE II, SAGE III and POAM III), of which the good agreement lends credibility to the GOMOS data set. Yearly zonal statistics are presented for the entire period considered. Time series furthermore convincingly show an important new finding: the sensitivity of GOMOS to the sulfate input by moderate volcanic eruptions such as Manam (2005) and Soufrière Hills (2006). Finally, PSCs are well observed by GOMOS and a first qualitative analysis of the data agrees well with the theoretical PSC formation temperature. Therefore, the importance of the GOMOS aerosol/cloud extinction profile data set is clear: a long-term data record of PSCs, subvisual cirrus, and background and volcanic aerosols in the UTLS region, consisting of hundreds of thousands of altitude profiles with near-global coverage, with the potential to fill the aerosol/cloud extinction data gap left behind after the discontinuation of occultation instruments such as SAGE II, SAGE III and POAM III.
Climatology and comparison of ozone from ENVISAT/GOMOS and SHADOZ/balloon-sonde observations in the southern tropics
Authors: Mze N. , Hauchecorne A. , Bencherif H. , Dalaudier F. , Bertaux J.-L.
Published: September 2010

Abstract. In this paper, the stellar occultation instrument GOMOS is compared with ozonesondes from the SHADOZ network. We only used nighttime O3 profiles and selected 8 Southern Hemisphere stations. 7 years of GOMOS datasets (GOPR 6.0cf and IPF 5.0) and 11 years of balloon-sondes are used in this study. A monthly distribution of GOMOS O3 mixing ratios was performed in the upper-troposphere and in the stratosphere (15–50 km). A comparison with SHADOZ was made in the altitude range between 15 km and 30 km. In the 21–30 km altitude range, a satisfactory agreement was observed between GOMOS and SHADOZ, although some differences were observed depending on the station. The range for monthly differences generally decreases with increasing height and is within ±15%. It was found that the agreement between GOMOS and SHADOZ declines below ~20 km. The median differences are almost within ±5%, particularly above 23 km. But a large positive bias was found below 21 km, in comparison to SHADOZ.
Two-moment bulk stratiform cloud microphysics in the GFDL AM3 GCM: description, evaluation, and sensitivity tests
Authors: Salzmann M. , Ming Y. , Golaz J.-C. , Ginoux P. A. , Morrison H. , Gettelman A. , Krämer M. , Donner L. J.
Published: September 2010

Abstract. A new stratiform cloud scheme including a two-moment bulk microphysics module, a cloud cover parameterization allowing ice supersaturation, and an ice nucleation parameterization has been implemented into the recently developed GFDL AM3 general circulation model (GCM) as part of an effort to treat aerosol-cloud-radiation interactions more realistically. Unlike the original scheme, the new scheme facilitates the study of cloud-ice-aerosol interactions via influences of dust and sulfate on ice nucleation. While liquid and cloud ice water path associated with stratiform clouds are similar for the new and the original scheme, column integrated droplet numbers and global frequency distributions (PDFs) of droplet effective radii differ significantly. This difference is in part due to a difference in the implementation of the Wegener-Bergeron-Findeisen (WBF) mechanism, which leads to a larger contribution from super-cooled droplets in the original scheme. Clouds are more likely to be either completely glaciated or liquid due to the WBF mechanism in the new scheme. Super-saturations over ice simulated with the new scheme are in qualitative agreement with observations, and PDFs of ice numbers and effective radii appear reasonable in the light of observations. Especially, the temperature dependence of ice numbers qualitatively agrees with in-situ observations. The global average long-wave cloud forcing decreases in comparison to the original scheme as expected when super-saturation over ice is allowed. Anthropogenic aerosols lead to a larger decrease in short-wave absorption (SWABS) in the new model setup, but outgoing long-wave radiation (OLR) decreases as well, so that the net effect of including anthropogenic aerosols on the net radiation at the top of the atmosphere (netradTOA = SWABS-OLR) is of similar magnitude for the new and the original scheme.
Haze types in Beijing and the influence of agricultural biomass burning
Authors: Li W. J. , Shao L. Y. , Buseck P. R.
Published: September 2010

Abstract. Emissions from agricultural biomass burning (ABB) in northern China have a significant impact on the regional and global climate. The monthly average aerosol optical depth (AOD) at 550 nm in northern China in 2007 had a maximum of 0.7 in June. The AOD measurements are consistent with regional brown hazes that occurred at that time, which was a period of severe aerosol pollution. Aerosol particles were collected in urban Beijing from 12 to 30 June 2007, during a period of high haze, and studied using transmission electron microscopy with energy-dispersive X-ray spectrometry. The dominant particle types collected in the fine fraction (diameter <1 μm) were ammonium sulfate, soot, K2SO4, KNO3, and organic matter, except that the K salts were minor between 21 and 30 June. K-rich particles as tracers of biomass burning, together with wildfire maps, show that intense regional ABB in northern China contributed significantly to the regional haze between 12 and 20 June. We therefore grouped the episodes into type-1 and -2 haze, with the former occurring between 12 and 20 June and the latter between 21 and 30 June. After long-range transport, ABB particles in the type-1 haze exhibited marked changes in morphology, composition, and mixing state. KCl particles were absent, presumably having been converted by heterogeneous reactions to K2SO4 and KNO3. Soot particles were mixed with the other particle types. Abundant organic matter and soluble salts emitted by ABB increased their sizes during transport and resulted in more hygroscopic aerosol particles in downwind areas, becoming additional cloud condensation nuclei. The high AOD (average value 2.2) in Beijing during 12 to 20 June is partly explained by the hygroscopic growth of fine aerosol particles and by the strong absorption of internally mixed soot particles, both coming from regional ABB emissions. Therefore, it is important to consider the origins of the haze, which in turn leads to the different particle types.
Radiative heating rates profiles associated with a springtime case of Bodélé and Sudan dust transport over West Africa
Authors: Lemaître C. , Flamant C. , Cuesta J. , Raut J.-C. , Chazette P. , Formenti P. , Pelon J.
Published: September 2010

Abstract. The radiative heating rate due to mineral dust over West Africa is investigated using the radiative code STREAMER, as well as remote sensing and in situ observations gathered during the African Monsoon Multidisciplinary Analysis Special Observing Period (AMMA SOP). We focus on two days (13 and 14 June 2006) of an intense and long lasting episode of dust being lifted in remote sources in Chad and Sudan and transported across West Africa in the African easterly jet region, during which airborne operations were conducted at the regional scale, from the southern fringes of the Sahara to the Gulf of Guinea. Profiles of heating rates are computed from airborne LEANDRE 2 (Lidar Embarqué pour l'étude de l'Atmosphère: Nuages Dynamique, Rayonnement et cycle de l'Eau) and space-borne CALIOP (Cloud Aerosol Lidar and Infrared Pathfinder Satellite Observations) lidar observations using two mineral dust model constrained by airborne in situ data and ground-based sunphotometer obtained during the campaign. Complementary spaceborne observations (from the Moderate-resolution Imaging Spectroradiometer-MODIS) and in-situ observations such as dropsondes are also used to take into account the infrared contribution of the water vapour. We investigate the variability of the heating rate on the vertical within a dust plume, as well as the contribution of both shortwave and longwave radiation to the heating rate and the radiative heating rate profiles of dust during daytime and nighttime. The sensitivity of the so-derived heating rate is also analyzed for some key variables for which the associated uncertainties may be large. During daytime, the warming associated with the presence of dust was found to be between 1.5 K day−1 and 4 K day−1, on average, depending on altitude and latitude. Strong warming (i.e. heating rates as high as 8 K day−1) was also observed locally in some limited part of the dust plumes. The uncertainty on the heating rate retrievals in the optically thickest part of the dust plume was estimated to be between 0.5 and 1.4 K day−1. During nighttime much smaller values of heating/cooling are retrieved (less than ±1 K day−1). Furthermore, cooling is observed as the result of the longwave forcing in the dust layer, while warming is observed below the dust layer, in the monsoon layer.
The sensitivity of the oxygen isotopes of ice core sulfate to changing oxidant concentrations since the preindustrial
Authors: Sofen E. D. , Alexander B. , Kunasek S. A.
Published: September 2010

Abstract. Changes in tropospheric oxidant concentrations since preindustrial times have implications for the ozone radiative forcing, lifetimes of reduced trace gases, aerosol formation, and human health but are highly uncertain. Measurements of the triple oxygen isotopes of sulfate in ice cores (described by Δ17OSO4 = δ17O − 0.52 × δ18O) provide one of the few constraints on paleo-oxidants. We use the GEOS-Chem global atmospheric chemical transport model to simulate changes in oxidant concentrations and the Δ17OSO4 between 1850 and 1990 to assess the sensitivity of Δ17OSO4 measurements in Greenland and Antarctic ice cores to changing tropospheric oxidant concentrations. The model indicates a 42% increase in the concentration of global mean tropospheric O3, a 10% decrease in OH, and a 58% increase in H2O2 between the preindustrial and present. Modeled Δ17OSO4 is consistent with measurements from ice core and aerosol samples. Model results indicate that the observed decrease in the Arctic Δ17OSO4 in spite of increasing O3 is due to the combined effects of increased sulfate formation by O2 catalyzed by anthropogenic transition metals and increased cloud water acidity. In Antarctica, the Δ17OSO4 is sensitive to relative changes of oxidant concentrations, but in a nonlinear fashion. Sensitivity studies explore the uncertainties in preindustrial emissions of oxidant precursors.
Trend and characteristics of atmospheric emissions of Hg, As, and Se from coal combustion in China, 1980–2007
Authors: Tian H. Z. , Wang Y. , Xue Z. G. , Cheng K. , Qu Y. P. , Chai F. H. , Hao J. M.
Published: September 2010

Abstract. Emissions of hazardous trace elements in China are of great concern because of their negative impacts on local air quality as well as on regional environmental health and ecosystem risks. In this paper, the atmospheric emissions of mercury (Hg), arsenic (As), and selenium (Se) from coal combustion in China for the period 1980–2007 are estimated on the basis of coal consumption data and emission factors, which are specified by different categories of combustion facilities, coal types, and the equipped air pollution control devices configuration (Dust collectors, FGD, etc.). Specifically, multi-year emission inventories of Hg, As, and Se from 30 provinces and 4 economic sectors (thermal power, industry, residential use, and others) are evaluated and analyzed in detail. Furthermore, the gridded distribution of provincial-based Hg, As, and Se emissions in 2005 at a resolution of 1°×1° is also plotted. It shows that the calculated national total atmospheric emissions of Hg, As, and Se from coal combustion have rapidly increased from 73.59 t, 635.57 t, and 639.69 t in 1980 to 305.95 t, 2205.50 t, and 2352.97 t in 2007, at an annually averaged growth rate of 5.4%, 4.7%, and 4.9%, respectively. The industrial sector is the largest source for Hg, As, and Se, accounting for about 50.8%, 61.2%, and 56.2% of the national totals, respectively. The share of power plants is 43.3% for mercury, 24.9% for arsenic, and 33.4% for selenium, respectively. Also, it shows remarkably different regional contribution characteristics of these 3 types of trace elements, the top 5 provinces with the heaviest mercury emissions in 2007 are Shandong (34.40 t), Henan (33.63 t), Shanxi (21.14 t), Guizhou (19.48 t), and Hebei (19.35 t); the top 5 provinces with the heaviest arsenic emissions in 2007 are Shandong (219.24 t), Hunan (213.20 t), Jilin (141.21 t), Hebei (138.54 t), and Inner Mongolia (127.49 t); while the top 5 provinces with the heaviest selenium emissions in 2007 are Shandong (289.11 t), Henan (241.45 t), Jiangsu (175.44 t), Anhui (168.89 t), and Hubei (163.96 t). Between 2000 and 2007, provinces always rank at the top five largest Hg, As, and Se emission sources are: Shandong, Hebei, Shanxi, Henan, and Jiangsu, most of which are located in the east and are traditional industry-based or economically energy intensive areas in China. Notably, Hg, As, and Se emissions from coal combustion in China begin to grow at a more moderate pace since 2005. Emissions from coal-fired power plants sector began to decrease though the coal use had been increasing steadily, which can be mainly attributed to the more and more installation of WFGD in power plants, thus the further research and control orientations of importance for these hazardous trace elements should be the industrial sector.
Physical properties of iodate solutions and the deliquescence of crystalline I2O5 and HIO3
Authors: Kumar R. , Saunders R. W. , Mahajan A. S. , Plane J. M. C. , Murray B. J.
Published: September 2010

Abstract. Secondary aerosol produced from marine biogenic sources in algal-rich coastal locations will initially be composed of iodine oxide species, most likely I2O5, or its hydrated form HIO3, formed as a result of iodine gas-phase chemistry. At present, there is no quantitative hygroscopic data for these compounds and very little data available for iodate solutions (HIO3 and I2O5 share a common aqueous phase). With increased interest in the role of such aerosol in the marine atmosphere, we have conducted studies of (i) the deliquescence behaviour of crystalline HIO3 and I2O5 at 273–303 K, (ii) the efflorescence behaviour of aqueous iodate solution droplets, and (iii) properties (water activity, density, and viscosity) of subsaturated and saturated iodate solutions. The deliquescence of I2O5 crystals at 293 K was observed to occur at a relative humidity (DRH) of 80.8±1.0%, whereas for HIO3, a DRH of 85.0±1.0% was measured. These values are consistent with measured water activity values for saturated I2O5 and HIO3 solutions at 293 K of 0.80±0.01 and 0.84±0.01 respectively. At all temperatures, DRH values for HIO3 crystals were observed to be higher than for those of I2O5. The temperature-dependent DRH data, along with solubility and water activity data were used to evaluate the enthalpy of solution (ΔHsol) for HIO3 and I2O5. A (ΔHsol value of 8.3±0.7 kJ mol−1 was determined for HIO3 which is consistent with a literature value of 8.8 kJ mol−1. For I2O5, we report for the first time its solubility at various temperatures and (ΔHsol=12.4±.6 kJ mol−1. The measured water activity values confirm that aqueous iodate solutions are strongly non-ideal, consistent with previous reports of complex ion formation and molecular aggregation.
Results from the University of Toronto continuous flow diffusion chamber (UT-CFDC) at the international workshop for comparing ice nucleation measuring systems (ICIS 2007)
Authors: Kanji Z. A. , DeMott P. J. , Möhler O. , Abbatt J. P. D.
Published: September 2010

Abstract. The University of Toronto continuous flow diffusion chamber (UT-CFDC) was used to study heterogeneous ice nucleation at the International Workshop on Comparing Ice Nucleation Measuring Systems (ICIS 2007) which also represented the 4th ice nucleation workshop, on 14–28 September 2007. One goal of the workshop was to inter-compare different ice nucleation measurement techniques using the same aerosol sample source and preparation method. The aerosol samples included four types of desert mineral dust, graphite soot particles, and live and dead bacterial cells (Snomax®). This paper focuses on the UT-CFDC results, with a comparison to techniques of established heritage including the Colorado State CFDC and the AIDA expansion chamber. Good agreement was found between the different instruments with a few specific differences attributed to the variation in how onset of ice formation is defined between the instruments. It was found that when efficiency of ice formation is based on the lowest onset relative humidity, Snomax® particles were most efficient followed by the desert dusts and then soot. For all aerosols, deposition mode freezing was only observed for T < 245 K except for the dead bacteria where freezing occurred below water saturation as warm as 263 K.
Accounting for surface reflectance anisotropy in satellite retrievals of tropospheric NO2
Authors: Zhou Y. , Brunner D. , Spurr R. J. D. , Boersma K. F. , Sneep M. , Popp C. , Buchmann B.
Published: September 2010

Abstract. Surface reflectance is a key parameter in satellite trace gas retrievals in the UV/visible range and in particular for the retrieval of nitrogen dioxide (NO2) vertical tropospheric columns (VTCs). Current operational retrievals rely on coarse-resolution reflectance data and do not account for the generally anisotropic properties of surface reflectance. Here we present a NO2 VTC retrieval that uses MODIS bi-directional reflectance distribution function (BRDF) data at high temporal (8 days) and spatial (1 km × 1 km) resolution in combination with the LIDORT radiative transfer model to account for the dependence of surface reflectance on viewing and illumination geometry. The method was applied to two years of NO2 observations from the Ozone Monitoring Instrument (OMI) over Europe. Due to its wide swath, OMI is particularly sensitive to BRDF effects. Using representative BRDF parameters for various land surfaces, we found that in July (low solar zenith angles) and November (high solar zenith angles) and for typical viewing geometries of OMI, differences between MODIS black-sky albedos and surface bi-directional reflectances are of the order of 0–10% and 0–40%, respectively, depending on the position of the OMI pixel within the swath. In the retrieval, black-sky albedo was treated as a Lambertian (isotropic) reflectance, while for BRDF effects we used the kernel-based approach in the MODIS BRDF product. Air Mass Factors were computed using the LIDORT radiative transfer model based on these surface reflectance conditions. Differences in NO2 VTCs based on the Lambertian and BRDF approaches were found to be of the order of 0–3% in July and 0–20% in November with the extreme values found at large viewing angles. The much larger differences in November are mainly due to stronger BRDF effects at higher solar zenith angles. To a smaller extent, they are also caused by the typically more pronounced maximum of the NO2 a priori profiles in the boundary layer during the cold season, which make the retrieval more sensitive to radiation changes near the surface. However, BRDF impacts vary considerably across Europe due to differences in land surface type and increasing solar zenith angles at higher latitude. Finally, we compare BRDF-based NO2 VTCs with those retrieved using the GOME/TOMS Lambertian equivalent reflectance (LER) data set. The relative differences are mostly below 15% in July but in November the NO2 VTCs from TOMS/GOME are lower by 20–60%. Our results indicate that the specific choice of albedo data set is even more important than accounting for surface BRDF effects, and this again demonstrates the strong requirement for more accurate surface reflectance data sets.
Ceilometer-lidar inter-comparison: backscatter coefficient retrieval and signal-to-noise ratio determination
Authors: Heese B. , Flentje H. , Althausen D. , Ansmann A. , Frey S.
Published: September 2010

Abstract. The potential of a new generation of ceilometer instruments for aerosol monitoring has been studied in the Ceilometer-Lidar Inter- Comparison (CLIC) study. The ceilometer is of type CHM15k from Jenoptik, Germany, which uses a solid state laser at the wavelength of 1064 nm and an avalanche photodiode for photon counting detection. The German Meteorological Service is in progress of setting up a ceilometer network for aerosol monitoring in Germany. The intercomparison study was performed to determine whether the ceilometers are capable to deliver quality assured particle backscatter coefficient profiles. For this, the derived ceilometer profiles were compared to simultaneously measured lidar profiles at the same wavelength. The lidar used for this intercomparison was IfTs multi-wavelengths Raman lidar PollyXT. During the EARLINET lidar intercomparison campaign EARLI 09 in Leipzig, Germany, a new type of the Jenoptik ceilometer, the CHM15k-X, took part. This new ceilometer has a new optical setup resulting in a complete overlap at 150 m. The derived particle backscatter profiles were compared to profiles derived from PollyXTs measurements, too. The elastic daytime particle backscatter profiles as well as the less noisy night-time Raman particle backscatter profiles compare well with the ceilometers profiles in atmospheric structures like aerosol layers or the boundary layer top height. The calibration of the ceilometer profiles by an independent measurement of the aerosol optical depth (AOD) by a sun photometer is necessary to determine the correct magnitude of the particle backscatter coefficient profiles. A comprehensive signal-to-noise ratio study was carried out to characterize the ceilometers signal performance with increasing altitude.
Remote sensing of water vapour profiles in the framework of the Total Carbon Column Observing Network (TCCON)
Authors: Schneider M. , Sepúlveda E. , García O. , Hase F. , Blumenstock T.
Published: September 2010

Abstract. We show that the near infrared solar absorption spectra recorded in the framework of the Total Carbon Column Observing Network (TCCON) can be used to derive the vertical distribution of tropospheric water vapour. Using spectral H2O signatures in the 4500–4700 cm−1 region one can well distinguish lower from middle/upper tropospheric water vapour concentrations. The vertical resolution is about 3 and 6 km, for the lower and middle/upper troposphere, respectively. We document the quality of the remotely-sensed profiles by comparisons with coincident in-situ Vaisala RS92 radiosonde measurements. The agreement of both techniques is very satisfactory. Due to the long-term strategy of the network and the high measurement frequency, the TCCON water vapour profile data offer novel opportunities for estimating the water vapour variability at different time scales and altitudes.
Hypoxia and cyanobacteria blooms - are they really natural features of the late Holocene history of the Baltic Sea?
Authors: Zillén L. , Conley D. J.
Published: September 2010

Abstract. During the last century (1900s) industrialized forms of agriculture and human activities have caused eutrophication of Baltic Sea waters. As a consequence, the hypoxic zone in the Baltic Sea has increased, especially during the last 50 years, and has caused severe ecosystem disturbance. Climate forcing has been proposed to be responsible for the reported trends in hypoxia (< 2 mg/l O2) both during the last c. 100 years (since c. 1900 AD) and the Medieval Period. By contrast, investigations of the degree of anthropogenic forcing on the ecosystem on long time-scales (millennial and greater) have not been thoroughly addressed. This paper examines evidence for anthropogenic disturbance of the marine environment beyond the last century through the analysis of the human population growth, technological development and land-use changes in the drainage area. Natural environmental changes, i.e. changes in the morphology and depths of the Baltic basin and the sills, were probably the main driver for large-scale hypoxia during the early Holocene (8000–4000 cal yr BP). We show that hypoxia during the last two millennia has followed the general expansion and contraction trends in Europe and that human perturbation has been an important driver for hypoxia during that time. Hypoxia occurring during the Medieval Period coincides with a doubling of the population (from c. 4.6 to 9.5 million) in the Baltic Sea watershed, a massive reclamation of land in both established and marginal cultivated areas and significant increases in soil nutrient release. The role of climate forcing on hypoxia in the Baltic Sea has yet to be demonstrated convincingly, although it could have helped to sustain hypoxia through enhanced salt water inflows or through changes in hydrological inputs. In addition, cyanobacteria blooms are not natural features of the Baltic Sea as previously deduced, but are a consequence of enhanced phosphorus release from the seabed that occurs during hypoxia.