bluuebunny/crossref_metadata_2025 huggingface dataset:
Supplementary Data from Role of the Protein Tyrosine Kinase Syk in Regulating Cell-Cell Adhesion and Motility in Breast Cancer Cells
Authors: Zhang Xiaoying , Shrikhande Ulka , Alicie Bethany M. , Zhou Qing , Geahlen Robert L.
Published: April 2023

Supplementary Data from Role of the Protein Tyrosine Kinase Syk in Regulating Cell-Cell Adhesion and Motility in Breast Cancer Cells
Supplementary Data from Low-Dose Valproic Acid Enhances Radiosensitivity of Prostate Cancer through Acetylated p53-Dependent Modulation of Mitochondrial Membrane Potential and Apoptosis
Authors: Chen Xufeng , Wong Jeffrey Y.C. , Wong Patty , Radany Eric H.
Published: April 2023

Supplementary Figures S1-S5; Supplementary Tables S1-S2.
Supplementary Figure 2 from C/EBPα, C/EBPα Oncoproteins, or C/EBPβ Preferentially Bind NF-κB p50 Compared with p65, Focusing Therapeutic Targeting on the C/EBP:p50 Interaction
Authors: Dooher Julia E. , Paz-Priel Ido , Houng Simone , Baldwin Albert S. , Friedman Alan D.
Published: April 2023

PDF file - 1.6 MB
Supplementary Figure 1 from C/EBPα, C/EBPα Oncoproteins, or C/EBPβ Preferentially Bind NF-κB p50 Compared with p65, Focusing Therapeutic Targeting on the C/EBP:p50 Interaction
Authors: Dooher Julia E. , Paz-Priel Ido , Houng Simone , Baldwin Albert S. , Friedman Alan D.
Published: April 2023

PDF file - 2.6 MB
Supplementary Table 1 from A Sensitized RNA Interference Screen Identifies a Novel Role for the PI3K p110γ Isoform in Medulloblastoma Cell Proliferation and Chemoresistance
Authors: Guerreiro Ana S. , Fattet Sarah , Kulesza Dorota W. , Atamer Abdullah , Elsing Alexandra N. , Shalaby Tarek , Jackson Shaun P. , Schoenwaelder Simone M. , Grotzer Michael A. , Delattre Olivier , Arcaro Alexandre
Published: April 2023

Supplementary Table 1 from A Sensitized RNA Interference Screen Identifies a Novel Role for the PI3K p110γ Isoform in Medulloblastoma Cell Proliferation and Chemoresistance
Supplementary Figure 1 from A Sensitized RNA Interference Screen Identifies a Novel Role for the PI3K p110γ Isoform in Medulloblastoma Cell Proliferation and Chemoresistance
Authors: Guerreiro Ana S. , Fattet Sarah , Kulesza Dorota W. , Atamer Abdullah , Elsing Alexandra N. , Shalaby Tarek , Jackson Shaun P. , Schoenwaelder Simone M. , Grotzer Michael A. , Delattre Olivier , Arcaro Alexandre
Published: April 2023

Supplementary Figure 1 from A Sensitized RNA Interference Screen Identifies a Novel Role for the PI3K p110γ Isoform in Medulloblastoma Cell Proliferation and Chemoresistance
Supplementary Data from A Complex of EpCAM, Claudin-7, CD44 Variant Isoforms, and Tetraspanins Promotes Colorectal Cancer Progression
Authors: Kuhn Sebastian , Koch Moritz , Nübel Tobias , Ladwein Markus , Antolovic Dalibor , Klingbeil Pamela , Hildebrand Dagmar , Moldenhauer Gerhard , Langbein Lutz , Franke Werner W. , Weitz Jürgen , Zöller Margot
Published: April 2023

Supplementary Data from A Complex of EpCAM, Claudin-7, CD44 Variant Isoforms, and Tetraspanins Promotes Colorectal Cancer Progression
Supplementary Movie 2 from Adaptor Molecule Crk Is Required for Sustained Phosphorylation of Grb2-Associated Binder 1 and Hepatocyte Growth Factor–Induced Cell Motility of Human Synovial Sarcoma Cell Lines
Authors: Watanabe Takuya , Tsuda Masumi , Makino Yoshinori , Ichihara Shin , Sawa Hirofumi , Minami Akio , Mochizuki Naoki , Nagashima Kazuo , Tanaka Shinya
Published: April 2023

Supplementary Movie 2 from Adaptor Molecule Crk Is Required for Sustained Phosphorylation of Grb2-Associated Binder 1 and Hepatocyte Growth Factor–Induced Cell Motility of Human Synovial Sarcoma Cell Lines
Supplementary Figure S1 from The Fibroblast Growth Factor–Inducible 14 Receptor Is Highly Expressed in HER2-Positive Breast Tumors and Regulates Breast Cancer Cell Invasive Capacity
Authors: Willis Amanda L. , Tran Nhan L. , Chatigny Julie M. , Charlton Nichole , Vu Hong , Brown Sharron A.N. , Black Michael A. , McDonough Wendy S. , Fortin Shannon P. , Niska Joshua R. , Winkles Jeffrey A. , Cunliffe Heather E.
Published: April 2023

Supplementary Figure S1 from The Fibroblast Growth Factor–Inducible 14 Receptor Is Highly Expressed in HER2-Positive Breast Tumors and Regulates Breast Cancer Cell Invasive Capacity
Supplementary Movie S2A from Oligodendrocyte Lineage Transcription Factor 2 Inhibits the Motility of a Human Glial Tumor Cell Line by Activating RhoA
Authors: Tabu Kouichi , Ohba Yusuke , Suzuki Tadaki , Makino Yoshinori , Kimura Taichi , Ohnishi Akiko , Sakai Mieko , Watanabe Takuya , Tanaka Shinya , Sawa Hirofumi
Published: April 2023

Supplementary Movie S2A from Oligodendrocyte Lineage Transcription Factor 2 Inhibits the Motility of a Human Glial Tumor Cell Line by Activating RhoA
Supplementary Movie S1B from Oligodendrocyte Lineage Transcription Factor 2 Inhibits the Motility of a Human Glial Tumor Cell Line by Activating RhoA
Authors: Tabu Kouichi , Ohba Yusuke , Suzuki Tadaki , Makino Yoshinori , Kimura Taichi , Ohnishi Akiko , Sakai Mieko , Watanabe Takuya , Tanaka Shinya , Sawa Hirofumi
Published: April 2023

Supplementary Movie S1B from Oligodendrocyte Lineage Transcription Factor 2 Inhibits the Motility of a Human Glial Tumor Cell Line by Activating RhoA
Supplementary Table 2 from Dual Screen for Efficacy and Toxicity Identifies HDAC Inhibitor with Distinctive Activity Spectrum for BAP1-Mutant Uveal Melanoma
Authors: Kuznetsoff Jeffim N. , Owens Dawn A. , Lopez Andy , Rodriguez Daniel A. , Chee Nancy T. , Kurtenbach Stefan , Bilbao Daniel , Roberts Evan R. , Volmar Claude-Henry , Wahlestedt Claes , Brothers Shaun P. , Harbour J. William
Published: April 2023

Table S2. Results of epigenetic library screen.
Supplementary Fig 3 from Heme Sequestration Effectively Suppresses the Development and Progression of Both Lung Adenocarcinoma and Squamous Cell Carcinoma
Authors: Dey Sanchareeka , Ashrafi Adnin , Vidal Chantal , Jain Nivesh , Kalainayakan Sarada Preeta , Ghosh Poorva , Alemi Parinaz Sadat , Salamat Narges , Konduri Purna Chaitanya , Kim Jung-whan , Zhang Li
Published: April 2023

Supplementary Figure 3. The levels of heme synthesis (A), heme uptake (B), and oxygen consumption rate (OCR, C) in SCC cell lines are comparable to the levels of ADC cell lines.
Supplementary Data from Long-Chain Acyl-CoA Synthetase 4–Mediated Fatty Acid Metabolism Sustains Androgen Receptor Pathway–Independent Prostate Cancer
Authors: Ma Yongjie , Zhang Xiaohan , Alsaidan Omar Awad , Yang Xiangkun , Sulejmani Essilvo , Zha Junyi , Beharry Zanna , Huang Hanwen , Bartlett Michael , Lewis Zachary , Cai Houjian
Published: April 2023

Table S1. ChIP-qPCR primer sequences 5 kb upstream of ACSL4 Table S2. Primer sequences used for shRNAs, RT-PCR and ACSL4 primers 9 Figure S1. ACSLs expression levels in prostate cancer cell lines. Figure S2, related to Figure 3. Identification of AR binding sites in the promoter region of ACSL4 by ChIP-qPCR. Figure S3. ACSL3 and 4 regulation of the biosynthesis of fatty acyl-CoAs and catalytic efficiency. Figure S4. Verification of Myr-Src antibody. wn of ACSL3 has no effect on global protein myristoylation or myristoylSrc in PC-3 and DU14. Figure S5. Knockdown of ACSL3 has no effect on global protein myristoylation or myristoylSrc in PC-3 and DU145 cells. Figure S6, related to Figure 5. Knockdown of ACSL4 regulates the cell cycle in PC-3 and DU145 cells.
Figure S3 from Membrane-Associated RING-CH 8 Functions as a Novel PD-L1 E3 Ligase to Mediate PD-L1 Degradation Induced by EGFR Inhibitors
Authors: Qian Guoqing , Guo Jianping , Vallega Karin A. , Hu Changjiang , Chen Zhen , Deng Yunfu , Wang Qiming , Fan Songqing , Ramalingam Suresh S. , Owonikoko Taofeek K. , Wei Wenyi , Sun Shi-Yong
Published: April 2023

Osimertinib induces PD-L1 degradation independent of β-TrCP (A) and GSK3 (B-D).
Figure S1 from Membrane-Associated RING-CH 8 Functions as a Novel PD-L1 E3 Ligase to Mediate PD-L1 Degradation Induced by EGFR Inhibitors
Authors: Qian Guoqing , Guo Jianping , Vallega Karin A. , Hu Changjiang , Chen Zhen , Deng Yunfu , Wang Qiming , Fan Songqing , Ramalingam Suresh S. , Owonikoko Taofeek K. , Wei Wenyi , Sun Shi-Yong
Published: April 2023

PD-L1 mRNA reduction by osimertinib in EGFRm NSCLC cell lines as detected by RNA-seq.
Supplementary Figures 1-5 from Colorectal Cancer–Derived CAT1-Positive Extracellular Vesicles Alter Nitric Oxide Metabolism in Endothelial Cells and Promote Angiogenesis
Authors: Ikeda Atsushi , Nagayama Satoshi , Sumazaki Makoto , Konishi Makoto , Fujii Risa , Saichi Naomi , Muraoka Satoshi , Saigusa Daisuke , Shimada Hideaki , Sakai Yoshiharu , Ueda Koji
Published: April 2023

Supplementary figure 1. Dynamic range plot of quantified Te-EV proteome. The X axis indicates abundance rank of qualified Te-EV proteome, and the Y axis indicates the relative abundance by the LC/MS analysis. Supplementary figure 2. GO analysis of up-regulated (fold change > 5, adjusted p < 0.05) and down-regulated (fold change < 0.02, adjusted p < 0.05) proteins in tumor Te-EVs. For biological process, cellular component and molecular function, data of GOTERM_BP_FAT, GOTERM_CC_FAT and GOTERM_MF_FAT were used from Gene_Ontology in Functional Annotation Tool on the website, respectively. The Y axis indicates the percentage of the annotated proteins. Supplementary figure 3. Scatter plot showing EV-CAT1 sandwich ELISA (unit) on the X axis and preoperative CEA (ng / ml) on the Y axis (left). Magnified view of the plot is also shown (right). Coefficient of correlation value was 8.5 Ã- 10-3. Supplementary figure 4. Volcano plot indicating p-value (Te-EVs vs. tissues) on the Y axis and log ratio (Te-EVs / tissue) of LC/MS intensity on the X axis. Blue dots indicate the top 100 Te-EV proteins which are significantly up-regulated than tissue proteins, and orange dots indicate the top 100 proteins which are significantly down-regulated than tissue proteins. Supplementary figure 5. The analyses of subcellular proteome localisations are shown. The subcellular locations of tissues and Te-EVs are obtained on the Uniprot website. The distribution of the two proteome is similar with each other. The numbers show percentages.
Supplementary Figure 1-14 from Mutant p53 Attenuates Oxidative Phosphorylation and Facilitates Cancer Stemness through Downregulating miR-200c–PCK2 Axis in Basal-Like Breast Cancer
Authors: Chao Chi-Hong , Wang Chen-Yun , Wang Cing-Hong , Chen Ting-Wen , Hsu Huai-Yu , Huang Hao-Wei , Li Chia-Wei , Mai Ru-Tsun
Published: April 2023

S1. miR-200c-deficiency induced biological effects in mammary epithelial cells. S2. Expression of EMT inducers and stemness genes in miR-200c KO or overexpressing cells. S3. miR-200c-deficiency induces Warburg effect in mammary epithelial cells. S4. The mitochondrial oxidative phosphorylation is elevated by miR-200c in basal-like breast cancer cells. S5. Cell growth of miR-200c KO cells is not affected by low-dosage 2DG pretreatment for two days. S6. 2-DG and NADH treatment enhance oxidative phosphorylation in miR-200c deficient MCF12A cells. S7. NADH treatment fails to affect EMT-phenotype in miR-200c-deficient MCF12A cells. S8. p53 hot-spot mutations induce Warburg effect in mammary epithelial cells. S9. Examples of metabolites affected by miR-200c KO or MTp53-R280K overexpression. S10. miR-200c deficiency leads to altered expression of metabolic genes in central metabolic pathway. S11. PCK2 expression is regulated by ZEB1 and BMI1 in miR-200c-KO or p53 mutated mammary epithelial cells and basal-like breast cancer cells. S12. Expressional correlation between PCK2, miR-200c, and miR-200c direct target ZEB1/ ZEB2 in breast cancer patients. S13. PCK2 expression shows a slight to moderate negative association with EMT and stemness markers in breast cancer patients. S14. Interference of PCK2 expression compromised miR-200c-exeted tumor suppressive effect on p53 mutated BLBC cells.
Supplementary Figures S1-S6 from G9a Promotes Invasion and Metastasis of Non–Small Cell Lung Cancer through Enhancing Focal Adhesion Kinase Activation via NF-κB Signaling Pathway
Authors: Sun Ting , Zhang Keqiang , Pangeni Rajendra P. , Wu Jun , Li Wendong , Du Yong , Guo Yuming , Chaurasiya Shyambabu , Arvanitis Leonidas , Raz Dan J.
Published: April 2023

Figure S1. G9a silencing suppressed cell proliferation in A549 and H1299 NSCLCs Figure S2. Cell migration and invasion was suppressed in NSCLCs treated by G9a inhibitor UNC0638 Figure S3. G9a overexpression increased cell proliferation in NSCLCs Figure S4. FAK inhibitor attenuates the enhanced cell migration and invasion by G9a overexpression Figure S5. knockdown of G9a suppressed tumor metastasis in vivo. Figure S6. NF-kappa;B signaling pathway is independent of Wnt signaling pathway.
Supplementary Figures 1-6 and Supplementary Table 1 from Mapping of m6A and Its Regulatory Targets in Prostate Cancer Reveals a METTL3-Low Induction of Therapy Resistance
Authors: Cotter Kellie A. , Gallon John , Uebersax Nadine , Rubin Philip , Meyer Kate D. , Piscuoglio Salvatore , Jaffrey Samie R. , Rubin Mark A.
Published: April 2023

Supplementary Figure 1. Association between m6A "writer", "eraser", and "reader" proteins and markers of advanced-stage disease. Supplementary Figure 2. Relation of miCLIP results to transcript length and expression. Supplementary Figure 3. Reversible knockdown of METTL3 in LNCaP cells upregulates KIF5C. Supplementary Figure 4. LNCaP cells do not respond to IFN. Supplementary Figure 5. A subset of ENZ-regulated genes are differentially expressed with METTL3 knockdown and ENZ resistance is AR-independent. Supplementary Figure 6. m6A-immunoprecipitation and qPCR of selected candidate genes. Supplementary Table 1. Oligonucleotide Sequences
Supplementary Figures 1-4 from Inflammation-Induced Metastatic Colonization of the Lung Is Facilitated by Hepatocyte Growth Factor-Secreting Monocyte-Derived Macrophages
Authors: Arif Arif A. , Huang Yu-Hsuan , Freeman Spencer A. , Atif Jawairia , Dean Pamela , Lai Jacqueline C.Y. , Blanchet Marie-Renee , Wiegand Kimberly C. , McNagny Kelly M. , Underhill T. Michael , Gold Michael R. , Johnson Pauline , Roskelley Calvin D.
Published: April 2023

S1. Collagen staining of the inflamed lungs. S2. Extravasation of tumor cells from microvasculature. S3. Effects of methotrexate on the viability of B16F0. S4. MoDM conditioned media enhances the survival of B16F0 cells maintained in suspension culture.
Supplementary Table 3 from Extracellular Matrix–Bound FGF2 Mediates Estrogen Receptor Signaling and Therapeutic Response in Breast Cancer
Authors: DiGiacomo Josh W. , Godet Inês , Trautmann-Rodriguez Michael , Gilkes Daniele M.
Published: April 2023

Genes for RNA Sequencing Clustergrams
Table S6 from A Novel miR-146a-POU3F2/SMARCA5 Pathway Regulates Stemness and Therapeutic Response in Glioblastoma
Authors: Cui Tiantian , Bell Erica H. , McElroy Joseph , Liu Kevin , Sebastian Ebin , Johnson Benjamin , Gulati Pooja Manchanda , Becker Aline Paixao , Gray Ashley , Geurts Marjolein , Subedi Depika , Yang Linlin , Fleming Jessica L. , Meng Wei , Barnholtz-Sloan Jill S. , Venere Monica , Wang Qi-En , Robe Pierre A. , Haque S. Jaharul , Chakravarti Arnab
Published: April 2023

Table S6. Multivariable analyses of clinic-pathologic parameters of overall survival in patient with GBM in CGGA database
Supplementary Table 2 from Extracellular Matrix–Bound FGF2 Mediates Estrogen Receptor Signaling and Therapeutic Response in Breast Cancer
Authors: DiGiacomo Josh W. , Godet Inês , Trautmann-Rodriguez Michael , Gilkes Daniele M.
Published: April 2023

Genes Significantly Upregulated and Downregulated at least 2-fold by Both ECM Scaffold Culturing and BJ Fibroblast Coculture
Table S5 from A Novel miR-146a-POU3F2/SMARCA5 Pathway Regulates Stemness and Therapeutic Response in Glioblastoma
Authors: Cui Tiantian , Bell Erica H. , McElroy Joseph , Liu Kevin , Sebastian Ebin , Johnson Benjamin , Gulati Pooja Manchanda , Becker Aline Paixao , Gray Ashley , Geurts Marjolein , Subedi Depika , Yang Linlin , Fleming Jessica L. , Meng Wei , Barnholtz-Sloan Jill S. , Venere Monica , Wang Qi-En , Robe Pierre A. , Haque S. Jaharul , Chakravarti Arnab
Published: April 2023

Table S5. Multivariable analyses of clinic-pathologic parameters of overall survival in patient with GBM in TCGA database
Supplementary Data from Extracellular Matrix–Bound FGF2 Mediates Estrogen Receptor Signaling and Therapeutic Response in Breast Cancer
Authors: DiGiacomo Josh W. , Godet Inês , Trautmann-Rodriguez Michael , Gilkes Daniele M.
Published: April 2023

Supplementary Figure Legends
Table S2 from IQGAP3, a YAP Target, Is Required for Proper Cell-Cycle Progression and Genome Stability
Authors: Leone Marina , Cazorla-Vázquez Salvador , Ferrazzi Fulvia , Wiederstein Janica L. , Gründl Marco , Weinstock Grit , Vergarajauregui Silvia , Eckstein Markus , Krüger Marcus , Gaubatz Stefan , Engel Felix B.
Published: April 2023

Primary antibody information
Figure S6 from A Novel miR-146a-POU3F2/SMARCA5 Pathway Regulates Stemness and Therapeutic Response in Glioblastoma
Authors: Cui Tiantian , Bell Erica H. , McElroy Joseph , Liu Kevin , Sebastian Ebin , Johnson Benjamin , Gulati Pooja Manchanda , Becker Aline Paixao , Gray Ashley , Geurts Marjolein , Subedi Depika , Yang Linlin , Fleming Jessica L. , Meng Wei , Barnholtz-Sloan Jill S. , Venere Monica , Wang Qi-En , Robe Pierre A. , Haque S. Jaharul , Chakravarti Arnab
Published: April 2023

Fig. S6 miR-146a enhances TMZ sensitivity in GBM30 cells
Movie 4 from IQGAP3, a YAP Target, Is Required for Proper Cell-Cycle Progression and Genome Stability
Authors: Leone Marina , Cazorla-Vázquez Salvador , Ferrazzi Fulvia , Wiederstein Janica L. , Gründl Marco , Weinstock Grit , Vergarajauregui Silvia , Eckstein Markus , Krüger Marcus , Gaubatz Stefan , Engel Felix B.
Published: April 2023

HeLa cell stably expressing α-tubulin tagged with mCherry overexpressing IQGAP3 tagged with GFP (metaphase to cytokinesis).
Movie 3 from IQGAP3, a YAP Target, Is Required for Proper Cell-Cycle Progression and Genome Stability
Authors: Leone Marina , Cazorla-Vázquez Salvador , Ferrazzi Fulvia , Wiederstein Janica L. , Gründl Marco , Weinstock Grit , Vergarajauregui Silvia , Eckstein Markus , Krüger Marcus , Gaubatz Stefan , Engel Felix B.
Published: April 2023

HeLa cell stably expressing α-tubulin tagged with mCherry overexpressing IQGAP3 tagged with GFP (late anaphase/telophase to cytokinesis).
Figure S15 from A Novel miR-146a-POU3F2/SMARCA5 Pathway Regulates Stemness and Therapeutic Response in Glioblastoma
Authors: Cui Tiantian , Bell Erica H. , McElroy Joseph , Liu Kevin , Sebastian Ebin , Johnson Benjamin , Gulati Pooja Manchanda , Becker Aline Paixao , Gray Ashley , Geurts Marjolein , Subedi Depika , Yang Linlin , Fleming Jessica L. , Meng Wei , Barnholtz-Sloan Jill S. , Venere Monica , Wang Qi-En , Robe Pierre A. , Haque S. Jaharul , Chakravarti Arnab
Published: April 2023

Fig.S15 POU3F2 and SMARCA5 are positively correlated with each other in GBM cohorts
Table S1-2 from An IFNγ/STAT1/JMJD3 Axis Induces ZEB1 Expression and Promotes Aggressiveness in Lung Adenocarcinoma
Authors: Yang Jianjian , Wang Xue , Huang Bing , Liu Rong , Xiong Hui , Ye Fan , Zeng Chenxi , Fu Xiangning , Li Lequn
Published: April 2023

Table S1. List of Antibodies and reagents Table S2. Sequences of PCR primers
Figure S4 from An IFNγ/STAT1/JMJD3 Axis Induces ZEB1 Expression and Promotes Aggressiveness in Lung Adenocarcinoma
Authors: Yang Jianjian , Wang Xue , Huang Bing , Liu Rong , Xiong Hui , Ye Fan , Zeng Chenxi , Fu Xiangning , Li Lequn
Published: April 2023

S4. A549 cells were cultured with IFN-ï�§ for indicated time intervals.
Supplementary Figure S1, Figure S2, Figure S3 from TAGLN Is Downregulated by TRAF6-Mediated Proteasomal Degradation in Prostate Cancer Cells
Authors: Wen Fuping , Sun Xiaochen , Sun Chenxia , Dong Zhenyang , Jia Gaozhen , Bao Wei , Yu Haolan , Yang Chenghua
Published: April 2023

Figure S1:Plot of Fraction Genome Altered versus Cancer Type. Figure S2: Cellular localization of TAGLN and TRAF6. Figure S3: GO annotation of differentially expressed mRNA in shTAGLN BPH1 cells.
Supplemental Table 1 from Epstein-Barr Virus Induces Lymphangiogenesis and Lympth Node Metastasis via Upregulation of VEGF-C in Nasopharyngeal Carcinoma
Authors: Li Deng-Ke , Chen Xing-Rui , Wang Li-Na , Wang Jia-Hong , Wen Yue-Ting , Zhou Zi-Ying , Li Ji-Ke , Liu Jing-Xian , Cai Lin-Bo , Zhong Shui-Sheng , Lyu Xiao-Ming , Damola Faleti Oluwasijibomi , Li Min-Ying , Zhang Jing-Jing , Zeng Yu-Mei , Wang Qian-Li , Zhang Qian-Bing , Lyu Hao , Fu Xiao-Yan , Wang Wei , Li Xin , Huang Zhong-Xi , Yao Kai-Tai
Published: April 2023

Correlation between the clinicopathological features and EBV status
Supplementary Figures 1-5 from Stromal CAVIN1 Controls Prostate Cancer Microenvironment and Metastasis by Modulating Lipid Distribution and Inflammatory Signaling
Authors: Low Jin-Yih , Brennen W. Nathaniel , Meeker Alan K. , Ikonen Elina , Simons Brian W. , Laiho Marikki
Published: April 2023

Figure S1 shows cell growth and lipid distribution data. Figure S2 shows lipid distribution and invasion data. Figure S3 shows additional transcriptomic data. Figure S4 and S5 shows additional orthotopic data.
Figure S1 from Epstein-Barr Virus Induces Lymphangiogenesis and Lympth Node Metastasis via Upregulation of VEGF-C in Nasopharyngeal Carcinoma
Authors: Li Deng-Ke , Chen Xing-Rui , Wang Li-Na , Wang Jia-Hong , Wen Yue-Ting , Zhou Zi-Ying , Li Ji-Ke , Liu Jing-Xian , Cai Lin-Bo , Zhong Shui-Sheng , Lyu Xiao-Ming , Damola Faleti Oluwasijibomi , Li Min-Ying , Zhang Jing-Jing , Zeng Yu-Mei , Wang Qian-Li , Zhang Qian-Bing , Lyu Hao , Fu Xiao-Yan , Wang Wei , Li Xin , Huang Zhong-Xi , Yao Kai-Tai
Published: April 2023

Identification of EBV infection and genome clearance efficiency in the EBV-negative and positive-NPC cell lines
Supplementary Figure 1 from Distinct Genomic Alterations in Prostate Tumors Derived from African American Men
Authors: Liu Wennuan , Zheng S. Lilly , Na Rong , Wei Lin , Sun Jishan , Gallagher Johnie , Wei Jun , Resurreccion W. Kyle , Ernst Sarah , Sfanos Karen S. , Isaacs William B. , Xu Jianfeng
Published: April 2023

Somatically acquired exon mutations of PIK3CA identified by targeted deeper NGS in PCa of AA/black are compared with those reported in PCa of EA/white in the GDC (upper panel); and CNAs together with B-allele frequency identified by OncoScan (lower panels) in 2 example tumors harboring missense mutation p.I391M. In upper panel, blue = missense, green = synonymous, purple arrow marking a mutation previously reported in AA PCa.
Supplementary Figure from Quantitative Longitudinal Imaging Reveals that Inhibiting Hedgehog Activity Alleviates the Hypoxic Tumor Landscape
Authors: Lama-Sherpa Tshering D. , Das Shamik , Hinshaw Dominique C. , Kammerud Sarah C. , Song Patrick N. , Alsheikh Heba A. , Sorace Anna G. , Samant Rajeev S. , Shevde Lalita A.
Published: April 2023

Supplementary Figure from Quantitative Longitudinal Imaging Reveals that Inhibiting Hedgehog Activity Alleviates the Hypoxic Tumor Landscape
Supplementary Tables 1-5 for scRNAseq marker genes from HER2 Isoforms Uniquely Program Intratumor Heterogeneity and Predetermine Breast Cancer Trajectories During the Occult Tumorigenic Phase
Authors: Ginzel Joshua D. , Acharya Chaitanya R. , Lubkov Veronica , Mori Hidetoshi , Boone Peter G. , Rochelle Lauren K. , Roberts Wendy L. , Everitt Jeffrey I. , Hartman Zachary C. , Crosby Erika J. , Barak Lawrence S. , Caron Marc G. , Chen Jane Q. , Hubbard Neil E. , Cardiff Robert D. , Borowsky Alexander D. , Lyerly H. Kim , Snyder Joshua C.
Published: April 2023

Supplementary Table 1: Cluster-specific markers from all cells (8,486 cells) Supplementary Table 2: Cluster-specific markers from all epithelial cells (3,843 cells) Supplementary Table 3: Cluster-specific markers from all immune cells (1,803 cells) Supplementary Table 4: Cluster-specific markers from all fibroblast cells (922 cells) Supplementary Table 5a: State-specific markers from all d16:HBOW epithelial cells (1,421 cells) Supplementary Table 5b: State-specific markers from all p95:HBOW epithelial cells (1,258 cells)
Supplementary Figure 2 from Radiomics Biomarkers Correlate with CD8 Expression and Predict Immune Signatures in Melanoma Patients
Authors: Aoude Lauren G. , Wong Bernadette Z.Y. , Bonazzi Vanessa F. , Brosda Sandra , Walters Shaun B. , Koufariotis Lambros T. , Naeini Marjan M. , Pearson John V. , Oey Harald , Patel Kalpana , Bradford Julia J. , Bloxham Conor J. , Atkinson Victoria , Law Phillip , Strutton Geoffrey , Bayley Gerard , Yang Samuel , Smithers B. Mark , Waddell Nicola , Miles Kenneth , Barbour Andrew P.
Published: April 2023

The association between TMB and SD3/MPP4 is not statistically significant. A. MPP4, not significant, Fisher's exact. B. SD3, not significant, Fisher's exact.
Supplementary Figure 3 from HER2 Isoforms Uniquely Program Intratumor Heterogeneity and Predetermine Breast Cancer Trajectories During the Occult Tumorigenic Phase
Authors: Ginzel Joshua D. , Acharya Chaitanya R. , Lubkov Veronica , Mori Hidetoshi , Boone Peter G. , Rochelle Lauren K. , Roberts Wendy L. , Everitt Jeffrey I. , Hartman Zachary C. , Crosby Erika J. , Barak Lawrence S. , Caron Marc G. , Chen Jane Q. , Hubbard Neil E. , Cardiff Robert D. , Borowsky Alexander D. , Lyerly H. Kim , Snyder Joshua C.
Published: April 2023

UMAP clustering of sequenced cells and cluster identification
Supplementary Figure 2J from NP-ALT, a Liposomal:Peptide Drug, Blocks p27Kip1 Phosphorylation to Induce Oxidative Stress, Necroptosis, and Regression in Therapy-Resistant Breast Cancer Cells
Authors: Jilishitz Irina , Quiñones Jason Luis , Patel Priyank , Chen Grace , Pasetsky Jared , VanInwegen Allison , Schoninger Scott , Jogalekar Manasi P. , Tsiperson Vladislav , Yan Lingyue , Wu Yun , Gottesman Susan R.S. , Somma Jonathan , Blain Stacy W.
Published: April 2023

Biophysical & Biochemical Characterization of NP-ALT.
Supplementary Figure 1A-K from NP-ALT, a Liposomal:Peptide Drug, Blocks p27Kip1 Phosphorylation to Induce Oxidative Stress, Necroptosis, and Regression in Therapy-Resistant Breast Cancer Cells
Authors: Jilishitz Irina , Quiñones Jason Luis , Patel Priyank , Chen Grace , Pasetsky Jared , VanInwegen Allison , Schoninger Scott , Jogalekar Manasi P. , Tsiperson Vladislav , Yan Lingyue , Wu Yun , Gottesman Susan R.S. , Somma Jonathan , Blain Stacy W.
Published: April 2023

ALT treatment does not cause apoptosis or autophagy
Supplemental Figures 1-6 from Cytidine Deaminase APOBEC3A Regulates PD-L1 Expression in Cancer Cells in a JNK/c-JUN-Dependent Manner
Authors: Zhao Kailiang , Zhang Qiang , Flanagan Sheryl A. , Lang Xueting , Jiang Long , Parsels Leslie A. , Parsels Joshua D. , Zou Weiping , Lawrence Theodore S. , Buisson Rémi , Green Michael D. , Morgan Meredith A.
Published: April 2023

S1. APOBEC3A regulates PD-L1 expression. S2. APOBEC3A cytidine deaminase activity is required for PD-L1 expression S3. APOBEC3A-mediated PD-L1 expression is independent of the IFN/JAK/STAT and MEK pathways S4. APOBEC3A-mediated PD-L1 expression is dependent on replication-associated DNA damage S5. JNK/c-JUN signaling is required for APOBEC3A-mediated PD-L1 expression S6. APOBEC3A expression and activity positively correlates with PD-L1 expression levels in patient tumors
Supplemental Tables 1-8 from Studying Immunotherapy Resistance in a Melanoma Autologous Humanized Mouse Xenograft
Authors: Morton J. Jason , Alzofon Nathaniel , Keysar Stephen B. , Chimed Tugs-Saikhan , Reisinger Julie , Perrenoud Loni , Le Phuong N. , Nieto Cera , Gomez Karina , Miller Bettina , Yeager Randi , Gao Dexiang , Tan Aik-Choon , Somerset Hilary , Medina Theresa , Wang Xiao-Jing , Wang Jing H. , Robinson William , Roop Dennis R. , Gonzalez Rene , Jimeno Antonio
Published: April 2023

Table S1. Expanded HSPC engraftment into mouse cohorts Table S2. Human immune cell presence in HM tissues Table S3a. CUHM003 mutations present at diagnosis b. Additional CUHM003 mutations present at progression c. CUHM005 mutations present at diagnosis d. Additional CUHM005 mutations present at progression Table S4. Enrichment of immunity-related genes in patient and HM tumors Table S5a. Genes expressed only in the CUHM003 patient and mHM model b. Genes expressed only in the CUHM003 patient and aHM model c. Genes expressed only in the CUHM005 patient and mHM model d. Genes expressed only in the CUHM005 patient and aHM model Table S6. Changes in cancer pathway GSEA expression in patients, their NSG, mHM, and aHM models Table S7. Changes in GSEA hallmark expression between mouse models Table 8a. Genes differentially expressed in CUHM003 after PD1 treatment b. Genes differentially expressed in CUHM005 after PD1 treatment
Supplementary Table S2 from SHOC2 Is a Critical Modulator of Sensitivity to EGFR–TKIs in Non–Small Cell Lung Cancer Cells
Authors: Terai Hideki , Hamamoto Junko , Emoto Katsura , Masuda Takeshi , Manabe Tadashi , Kuronuma Satoshi , Kobayashi Keigo , Masuzawa Keita , Ikemura Shinnosuke , Nakayama Sohei , Kawada Ichiro , Suzuki Yusuke , Takeuchi Osamu , Suzuki Yukio , Ohtsuki Sumio , Yasuda Hiroyuki , Soejima Kenzo , Fukunaga Koichi
Published: April 2023

A list of genes would enhance the cytotoxic effect of erlotinib when they are depleted ranked by STARS algorithm.
Supplementary Figure 2 from Long Noncoding RNA NEAT1 Acts as a Molecular Switch for BRD4 Transcriptional Activity and Mediates Repression of BRD4/WDR5 Target Genes
Authors: Pistoni Mariaelena , Rossi Teresa , Donati Benedetta , Torricelli Federica , Polano Maurizio , Ciarrocchi Alessia
Published: April 2023

Supplementary Figure 2. BRD4 and H3K122ac loaded on different promoter regions, unaltered WDR5 and EZH2 expression upon JQ1 treatment and unchanged LMO2, EGR1 and GADD45B expression in breast cancer cells after WDR5 siRNA.
Supplementary Table 1 from Merkel Cell Polyomavirus Small T Antigen Activates Noncanonical NF-κB Signaling to Promote Tumorigenesis
Authors: Zhao Jiawei , Jia Yuemeng , Shen Shunli , Kim Jiwoong , Wang Xun , Lee Eunice , Brownell Isaac , Cho-Vega Jeong Hee , Lewis Cheryl , Homsi Jade , Sharma Rohit R. , Wang Richard C.
Published: April 2023

Primers used for cloning and qRT-pCR
Supplementary Table 2 from SOX9 Defines Distinct Populations of Cells in SHH Medulloblastoma but Is Not Required for Math1-Driven Tumor Formation
Authors: Adolphe Christelle , Millar Amanda , Kojic Marija , Barkauskas Deborah S. , Sundström Anders , Swartling Fredrik J. , Hediyeh-zadeh Soroor , Tan Chin Wee , Davis Melissa J. , Genovesi Laura A. , Wainwright Brandon J.
Published: April 2023

GFAPCre:Sox9lox/lox mice are not viable
Supplementary Figure 4 from SOX9 Defines Distinct Populations of Cells in SHH Medulloblastoma but Is Not Required for Math1-Driven Tumor Formation
Authors: Adolphe Christelle , Millar Amanda , Kojic Marija , Barkauskas Deborah S. , Sundström Anders , Swartling Fredrik J. , Hediyeh-zadeh Soroor , Tan Chin Wee , Davis Melissa J. , Genovesi Laura A. , Wainwright Brandon J.
Published: April 2023

S4. Single cell sequencing data analysis
Figure S3 from Mastermind Like Transcriptional Coactivator 3 (MAML3) Drives Neuroendocrine Tumor Progression
Authors: Alzofon Nathaniel , Koc Katrina , Panwell Kristin , Pozdeyev Nikita , Marshall Carrie B. , Albuja-Cruz Maria , Raeburn Christopher D. , Nathanson Katherine L. , Cohen Debbie L. , Wierman Margaret E. , Kiseljak-Vassiliades Katja , Fishbein Lauren
Published: April 2023

MAML3 increases cell viability. SK-N-SH, QGP-1 and BON-1 transfected with FL or dEx1 MAML3 showed increased cell viability by Cell Titer Glo assay (* p<0.05, ** p<0.01, *** p<0.001, **** p<0.0001)
Table S2 from Thyroid Hormone Receptor Beta Induces a Tumor-Suppressive Program in Anaplastic Thyroid Cancer
Authors: Bolf Eric L. , Gillis Noelle E. , Davidson Cole D. , Rodriguez Princess D. , Cozzens Lauren , Tomczak Jennifer A. , Frietze Seth , Carr Frances E.
Published: April 2023

Primer Table
Supplementary Data from LINC00239 Interacts with C-Myc Promoter-Binding Protein-1 (MBP-1) to Promote Expression of C-Myc in Esophageal Squamous Cell Carcinoma
Authors: Liang Xiaoliang , Lu Juntao , Wu Zheng , Guo Yanli , Shen Supeng , Liang Jia , Dong Zhiming , Guo Wei
Published: April 2023

Supplementary Data from LINC00239 Interacts with C-Myc Promoter-Binding Protein-1 (MBP-1) to Promote Expression of C-Myc in Esophageal Squamous Cell Carcinoma
Figure S8 from Thyroid Hormone Receptor Beta Induces a Tumor-Suppressive Program in Anaplastic Thyroid Cancer
Authors: Bolf Eric L. , Gillis Noelle E. , Davidson Cole D. , Rodriguez Princess D. , Cozzens Lauren , Tomczak Jennifer A. , Frietze Seth , Carr Frances E.
Published: April 2023

Supplemental Figure 8: Reintroduction of TRβ Increased Expression of interferon/JAK1/STAT1 Pathway Effectors. A-C) Following 24 hours of treatment with T3 or vehicle, protein levels in SW-EV and SW-TRβ were assessed by western blot. TRβ induced expression of JAK1 and STAT1. Representative western blot depicted. (*p<0.05, n=6) D) STAT1 and IRF1 regulated genes were induced upon overexpression of TRβ and T3 treatment. (n=6, * p<0.05, ** p<0.01, *** p<0.001, **** p<0.0001).
Supplementary Figure from Quantitative Proteomics Identifies Secreted Diagnostic Biomarkers as well as Tumor-Dependent Prognostic Targets for Clear Cell Renal Cell Carcinoma
Authors: Senturk Aydanur , Sahin Ayse T. , Armutlu Ayse , Kiremit Murat C. , Acar Omer , Erdem Selcuk , Bagbudar Sidar , Esen Tarik , Tuncbag Nurcan , Ozlu Nurhan
Published: April 2023

Supplementary Figure from Quantitative Proteomics Identifies Secreted Diagnostic Biomarkers as well as Tumor-Dependent Prognostic Targets for Clear Cell Renal Cell Carcinoma
Supplementary Data from Quantitative Proteomics Identifies Secreted Diagnostic Biomarkers as well as Tumor-Dependent Prognostic Targets for Clear Cell Renal Cell Carcinoma
Authors: Senturk Aydanur , Sahin Ayse T. , Armutlu Ayse , Kiremit Murat C. , Acar Omer , Erdem Selcuk , Bagbudar Sidar , Esen Tarik , Tuncbag Nurcan , Ozlu Nurhan
Published: April 2023

Supplementary Data from Quantitative Proteomics Identifies Secreted Diagnostic Biomarkers as well as Tumor-Dependent Prognostic Targets for Clear Cell Renal Cell Carcinoma
Figure S3 from Thyroid Hormone Receptor Beta Induces a Tumor-Suppressive Program in Anaplastic Thyroid Cancer
Authors: Bolf Eric L. , Gillis Noelle E. , Davidson Cole D. , Rodriguez Princess D. , Cozzens Lauren , Tomczak Jennifer A. , Frietze Seth , Carr Frances E.
Published: April 2023

Supplemental Figure 3: RNA-sequencing of the TRβ-Regulated Transcriptome Reveals a Transcription Factor Network. A) Chromatin Enrichment Analysis (ChEA) of differential expression clusters was performed to evaluate which transcription factor networks were overrepresented in each cluster. B) Multiple transcription factors elucidated by ChEA were also differentially expressed.
Figure S2 from Thyroid Hormone Receptor Beta Induces a Tumor-Suppressive Program in Anaplastic Thyroid Cancer
Authors: Bolf Eric L. , Gillis Noelle E. , Davidson Cole D. , Rodriguez Princess D. , Cozzens Lauren , Tomczak Jennifer A. , Frietze Seth , Carr Frances E.
Published: April 2023

Supplemental Figure 2: TRβ Repressed PI3K Signaling. A-I) Expression of cluster 1 differentially expressed genes in the ILK signaling IPA pathway. All genes were repressed by T3 and the level of most of these genes was repressed in the SW-TRβ-T3 condition compared to SW-EV-T3. (n=3, * p<0.05, n.s. p>0.05) B) AKT phosphorylation was repressed upon overexpression of TRβ in SW1736 cells. (representative blot of 3 experiments).
Supplementary Figures 1-7 from Loss of 9p21 Regulatory Hub Promotes Kidney Cancer Progression by Upregulating HOXB13
Authors: Baietti Maria Francesca , Zhao Peihua , Crowther Jonathan , Sewduth Raj Nayan , De Troyer Linde , Debiec-Rychter Maria , Sablina Anna A.
Published: April 2023

Fig. S1. The ENCODE ChIP-Seq data showing histone marks in the 9p21 locus of human mammary epithelial cells (HMEC). Fig. S2. CNV-seq analysis of the 9p21-deleted clones compared to wt-9p21 clones. Fig. S3. CDKN2A or CDKN2B knockdown does not promote cell transformation. Fig. S4. The 4C analysis of the 9p21 interactions. Fig. S5. The effect of CDKN2A loss on expression of the 9p21 interacting genes. Fig.S6. The effect of the 9p21 interacting genes on growth of kidney cells. Fig. S7. HOXB13 expression and 9p21 status in ccRCC tissues
Supplementary Table 6 from MicroRNA-324-5p–CUEDC2 Axis Mediates Gain-of-Function Mutant p53-Driven Cancer Stemness
Authors: Ghatak Dishari , Datta Arindam , Roychowdhury Tanaya , Chattopadhyay Samit , Roychoudhury Susanta
Published: April 2023

Supplementary Table 6
Supplementary Table 3 from MicroRNA-324-5p–CUEDC2 Axis Mediates Gain-of-Function Mutant p53-Driven Cancer Stemness
Authors: Ghatak Dishari , Datta Arindam , Roychowdhury Tanaya , Chattopadhyay Samit , Roychoudhury Susanta
Published: April 2023

Supplementary Table 3: NCI 60 data
Table S2 from Progesterone Receptor Is a Haploinsufficient Tumor-Suppressor Gene in Cervical Cancer
Authors: Park Yuri , Baik Seunghan , Ho Charles , Lin Chin-Yo , Chung Sang-Hyuk
Published: April 2023

IHC conditions and information for antibodies and chemicals.
Supplementary Information from Progesterone Receptor Is a Haploinsufficient Tumor-Suppressor Gene in Cervical Cancer
Authors: Park Yuri , Baik Seunghan , Ho Charles , Lin Chin-Yo , Chung Sang-Hyuk
Published: April 2023

Supplemental materials and methods, supplemental figure legends
Supplementary Figure 3 and Legend from Distinct Biomarker Profiles and TCR Sequence Diversity Characterize the Response to PD-L1 Blockade in a Mouse Melanoma Model
Authors: El Meskini Rajaa , Atkinson Devon , Kulaga Alan , Abdelmaksoud Abdalla , Gumprecht Michelle , Pate Nathan , Hayes Susana , Oberst Michael , Kaplan Ian M. , Raber Patrick , Van Dyke Terry , Sharan Shyam K. , Hollingsworth Robert , Day Chi-Ping , Merlino Glenn , Weaver Ohler Zoë
Published: April 2023

PD-L1 and FOXP3 expression in treated tumors.
Figure S4 from Progesterone Receptor Is a Haploinsufficient Tumor-Suppressor Gene in Cervical Cancer
Authors: Park Yuri , Baik Seunghan , Ho Charles , Lin Chin-Yo , Chung Sang-Hyuk
Published: April 2023

ESR1 expression levels and CNV data.
Supplementary Figure 1 and Legend from Distinct Biomarker Profiles and TCR Sequence Diversity Characterize the Response to PD-L1 Blockade in a Mouse Melanoma Model
Authors: El Meskini Rajaa , Atkinson Devon , Kulaga Alan , Abdelmaksoud Abdalla , Gumprecht Michelle , Pate Nathan , Hayes Susana , Oberst Michael , Kaplan Ian M. , Raber Patrick , Van Dyke Terry , Sharan Shyam K. , Hollingsworth Robert , Day Chi-Ping , Merlino Glenn , Weaver Ohler Zoë
Published: April 2023

Analysis of early tumor response to anti-PD-L1 treatment in Hgftg;Cdk4R24C/R24C melanoma bearing mice (Study 2).
Supplemental Tables S1-S3 from Genomic Landscape of Primary and Recurrent Anal Squamous Cell Carcinomas in Relation to HPV Integration, Copy-Number Variation, and DNA Damage Response Genes
Authors: Aldersley Jordan , Lorenz David R. , Mouw Kent W. , D'Andrea Alan D. , Gabuzda Dana
Published: April 2023

Supplemental Table S1. Clinical characteristics and outcomes by HIV status. Supplemental Table S2. HPV integration sites detected in patient WXS data. Supplemental Table S3. Curated list of 981 cancer-related genes considered in this study.
Supplemental Table S5 from Genomic Landscape of Primary and Recurrent Anal Squamous Cell Carcinomas in Relation to HPV Integration, Copy-Number Variation, and DNA Damage Response Genes
Authors: Aldersley Jordan , Lorenz David R. , Mouw Kent W. , D'Andrea Alan D. , Gabuzda Dana
Published: April 2023

Supplemental Table S5. Frequency of the most common DNA damage response gene deletions in 28 primary ASCC tumors by recurrence or non-recurrence.
File S3 from Circulating Tumor Cell Genomic Evolution and Hormone Therapy Outcomes in Men with Metastatic Castration-Resistant Prostate Cancer
Authors: Gupta Santosh , Halabi Susan , Kemeny Gabor , Anand Monika , Giannakakou Paraskevi , Nanus David M. , George Daniel J. , Gregory Simon G. , Armstrong Andrew J.
Published: April 2023

Top somatic COSMIC variations were compared between 11 baselines and matched post-treatment CTC-DNA of mCRPC patients. Matched WBC DNA has been used as a reference control for somatic mutation. All the somatic mutations detected in CTCs DNA were validated in the COSMIC database.
Supplementary Table from KRAS Mutants Upregulate Integrin β4 to Promote Invasion and Metastasis in Colorectal Cancer
Authors: Choi Seo-Hyun , Kim Jin K. , Chen Chin-Tung , Wu Chao , Marco Michael R. , Barriga Francisco M. , O'Rourke Kevin , Pelossof Raphael , Qu Xuan , Chang Qing , de Stanchina Elisa , Shia Jinru , Smith J. Joshua , Sanchez-Vega Francisco , Garcia-Aguilar Julio
Published: April 2023

Supplementary Table from KRAS Mutants Upregulate Integrin β4 to Promote Invasion and Metastasis in Colorectal Cancer
Table S1 from Mitochondrial Aconitase ACO2 Links Iron Homeostasis with Tumorigenicity in Non–Small Cell Lung Cancer
Authors: Mirhadi Shideh , Zhang Wen , Pham Nhu-An , Karimzadeh Fereshteh , Pintilie Melania , Tong Jiefei , Taylor Paul , Krieger Jonathan , Pitcher Bethany , Sykes Jenna , Wybenga-Groot Leanne , Fladd Christopher , Xu Jing , Wang Tao , Cabanero Michael , Li Ming , Weiss Jessica , Sakashita Shingo , Zaslaver Olga , Yu Man , Caudy Amy A. , St-Pierre Julie , Hawkins Cynthia , Kislinger Thomas , Liu Geoffrey , Shepherd Frances A. , Tsao Ming-Sound , Moran Michael F.
Published: April 2023

Statistical association of clinical and pathologic characteristics with engraftment
Supplementary Figure from KRAS Mutants Upregulate Integrin β4 to Promote Invasion and Metastasis in Colorectal Cancer
Authors: Choi Seo-Hyun , Kim Jin K. , Chen Chin-Tung , Wu Chao , Marco Michael R. , Barriga Francisco M. , O'Rourke Kevin , Pelossof Raphael , Qu Xuan , Chang Qing , de Stanchina Elisa , Shia Jinru , Smith J. Joshua , Sanchez-Vega Francisco , Garcia-Aguilar Julio
Published: April 2023

Supplementary Figure from KRAS Mutants Upregulate Integrin β4 to Promote Invasion and Metastasis in Colorectal Cancer
Supplementary Figure 1 from Mitochondrial Aconitase ACO2 Links Iron Homeostasis with Tumorigenicity in Non–Small Cell Lung Cancer
Authors: Mirhadi Shideh , Zhang Wen , Pham Nhu-An , Karimzadeh Fereshteh , Pintilie Melania , Tong Jiefei , Taylor Paul , Krieger Jonathan , Pitcher Bethany , Sykes Jenna , Wybenga-Groot Leanne , Fladd Christopher , Xu Jing , Wang Tao , Cabanero Michael , Li Ming , Weiss Jessica , Sakashita Shingo , Zaslaver Olga , Yu Man , Caudy Amy A. , St-Pierre Julie , Hawkins Cynthia , Kislinger Thomas , Liu Geoffrey , Shepherd Frances A. , Tsao Ming-Sound , Moran Michael F.
Published: April 2023

S1. The associations of ACO2 expression with NSCLC patient outcomes, and with cell line proliferation in vitro and in vivo.
Supplementary Figure from Proliferation and Self-Renewal Are Differentially Sensitive to NRASG12V Oncogene Levels in an Acute Myeloid Leukemia Cell Line
Authors: Kurata Morito , Antony Marie Lue , Noble-Orcutt Klara E. , Rathe Susan K. , Lee Yoonkyu , Furuno Hidehiro , Ishibashi Sachiko , Ikeda Masumi , Yamamoto Kouhei , Kitagawa Masanobu , Largaespada David A. , Sachs Zohar
Published: April 2023

Supplementary Figure from Proliferation and Self-Renewal Are Differentially Sensitive to NRASG12V Oncogene Levels in an Acute Myeloid Leukemia Cell Line
Supplementary Table from Comprehensive Viral Genotyping Reveals Prognostic Viral Phylogenetic Groups in HPV16-Associated Squamous Cell Carcinoma of the Oropharynx
Authors: Schrank Travis P. , Landess Lee , Stepp Wesley H. , Rehmani Hina , Weir William H. , Lenze Nicholas , Lal Asim , Wu Di , Kothari Aditi , Hackman Trevor G. , Sheth Siddharth , Patel Shetal , Jefferys Stuart R. , Issaeva Natalia , Yarbrough Wendell G.
Published: April 2023

Supplementary Table from Comprehensive Viral Genotyping Reveals Prognostic Viral Phylogenetic Groups in HPV16-Associated Squamous Cell Carcinoma of the Oropharynx
Supplementary Figure from Comprehensive Viral Genotyping Reveals Prognostic Viral Phylogenetic Groups in HPV16-Associated Squamous Cell Carcinoma of the Oropharynx
Authors: Schrank Travis P. , Landess Lee , Stepp Wesley H. , Rehmani Hina , Weir William H. , Lenze Nicholas , Lal Asim , Wu Di , Kothari Aditi , Hackman Trevor G. , Sheth Siddharth , Patel Shetal , Jefferys Stuart R. , Issaeva Natalia , Yarbrough Wendell G.
Published: April 2023

Supplementary Figure from Comprehensive Viral Genotyping Reveals Prognostic Viral Phylogenetic Groups in HPV16-Associated Squamous Cell Carcinoma of the Oropharynx
Supplementary Table from O-GlcNAcylation of Blimp-1 in Lymphocytes Inhibits Its Transcriptional Function and Is Associated with Migration and Invasion of Breast Cancer Cells
Authors: Chen Yan-Fang , Shao Guang-Can , Li Jie , Yang An-Qi , Li Jing , Ye Xin-Shan
Published: April 2023

Supplementary Table from O-GlcNAcylation of Blimp-1 in Lymphocytes Inhibits Its Transcriptional Function and Is Associated with Migration and Invasion of Breast Cancer Cells
Supplementary Table from Distinct Transcriptional Programs in Ascitic and Solid Cancer Cells Induce Different Responses to Chemotherapy in High-Grade Serous Ovarian Cancer
Authors: Loret Nele , Vandamme Niels , De Coninck Jordy , Taminau Joachim , De Clercq Kato , Blancke Gillian , Jonckheere Sven , Goossens Steven , Lemeire Kelly , De Prijck Sofie , Verstaen Kevin , Seurinck Ruth , Van Dorpe Jo , Weyers Steven , Denys Hannelore , Van de Vijver Koen , Lambrecht Bart N. , Tummers Philippe , Saeys Yvan , Berx Geert
Published: April 2023

Supplementary Table from Distinct Transcriptional Programs in Ascitic and Solid Cancer Cells Induce Different Responses to Chemotherapy in High-Grade Serous Ovarian Cancer
Supplementary Table 3 from TWEAK–Fn14–RelB Signaling Cascade Promotes Stem Cell–like Features that Contribute to Post-Chemotherapy Ovarian Cancer Relapse
Authors: Holmberg Ryne , Robinson Mikella , Gilbert Samuel F. , Lujano-Olazaba Omar , Waters Jennifer A. , Kogan Emily , Velasquez Candyd Lace R. , Stevenson Denay , Cruz Luisjesus S. , Alexander Logan J. , Lara Jacqueline , Mu Emily M. , Camillo Jared Rafael , Bitler Benjamin G. , Huxford Tom , House Carrie D.
Published: April 2023

Public databases used in this study
Supplementary Figure 3 from TWEAK–Fn14–RelB Signaling Cascade Promotes Stem Cell–like Features that Contribute to Post-Chemotherapy Ovarian Cancer Relapse
Authors: Holmberg Ryne , Robinson Mikella , Gilbert Samuel F. , Lujano-Olazaba Omar , Waters Jennifer A. , Kogan Emily , Velasquez Candyd Lace R. , Stevenson Denay , Cruz Luisjesus S. , Alexander Logan J. , Lara Jacqueline , Mu Emily M. , Camillo Jared Rafael , Bitler Benjamin G. , Huxford Tom , House Carrie D.
Published: April 2023

Mouse TWEAK activates NF-κB pathway in human ovarian cancer cells.
Supplementary Figure 2 from TWEAK–Fn14–RelB Signaling Cascade Promotes Stem Cell–like Features that Contribute to Post-Chemotherapy Ovarian Cancer Relapse
Authors: Holmberg Ryne , Robinson Mikella , Gilbert Samuel F. , Lujano-Olazaba Omar , Waters Jennifer A. , Kogan Emily , Velasquez Candyd Lace R. , Stevenson Denay , Cruz Luisjesus S. , Alexander Logan J. , Lara Jacqueline , Mu Emily M. , Camillo Jared Rafael , Bitler Benjamin G. , Huxford Tom , House Carrie D.
Published: April 2023

TWEAK has minimal effect on proliferation or apoptosis of ovarian cancer cells
Supplementary Table from A Recurrent ADPRHL1 Germline Mutation Activates PARP1 and Confers Prostate Cancer Risk in African American Families
Authors: Zhang Guanyi , Wang Zemin , Bavarva Jasmin , Kuhns Katherine J. , Guo Jianhui , Ledet Elisa M. , Qian Chiping , Lin Yuan , Fang Zhide , Zabaleta Jovanny , Valle Luis Del , Hu Jennifer J. , Mandal Diptasri , Liu Wanguo
Published: April 2023

Supplementary Table from A Recurrent ADPRHL1 Germline Mutation Activates PARP1 and Confers Prostate Cancer Risk in African American Families
Supplementary Methods and Figures 1-5 from GSTA4 Governs Melanoma Immune Resistance and Metastasis
Authors: Ucche Sisca , Yokoyama Satoru , Mojic Marija , Oki Kohei , Ohshima Chikako , Tsuihiji Haruka , Takasaki Ichiro , Tahara Hideaki , Hayakawa Yoshihiro
Published: April 2023

S1. Establishment of immune-escape variants of B16OVA
cells
S2. Immune-escape variants of B16OVA cells respond to IFN-gamma
S3. Establishment of GSTA4 over-expressing B16OVA
cells and GSTA4 knock-down IMM2 cells
S4. Tumor-infiltrating T cell population in IMM2 shCTRL
and IMM2 shGSTA4 tumors
S5. Expression of GSTA4 in metastatic B16 melanoma
variants