bluuebunny/crossref_metadata_2025 huggingface dataset:
Composting Sugarcane Filter Mud with Different Sources Differently Benefits Sweet Maize
Authors: Salman Muhammad , Inamullah  , Jamal Aftab , Mihoub Adil , Saeed Muhammad Farhan , Radicetti Emanuele , Ahmad Iftikhar , Naeem Asif , Ullah Jawad , Pampana Silvia
Published: March 2023

Reusing organic wastes in land applications would enhance the recovery of resources, following the concepts of the circular economy. The sugarcane-based sugar industry produces various by-products (e.g., sugarcane filter mud, molasses, and bagasse) that have the potential to contribute to crop production and soil fertility, owing to their high contents of organic matter and nutrients. Although the agricultural benefits of compost utilization in agriculture have been well-documented, to the best of our knowledge, few scientific data are currently available on the effects of sugarcane filter mud combined with the application of compost for increasing crop production. Thus, a field experiment was carried out to study how sugarcane filter mud, in combination with two compost sources, affected the growth and yield of sweet maize (Zea mays var. saccharata). We compared (i) two types of compost made from brassica residue and household waste applied at a rate of 9 t ha−1, and (ii) two application rates of sugarcane filter mud: 0 and 2 t ha−1 to two controls without any compost application: one with (+SFM) and one without (−SFM) sugar filter mud. The results highlighted that all crop growth and yield parameters benefited more from the domestic waste compost than from the brassica straw compost. Moreover, the addition of sugar filter mud to the compost further boosted the crop performance. Based on the above results, we concluded that the addition of sugarcane filter mud to locally available composts is a feasible approach for more sustainable production of sweet maize, combining efficient waste disposal and the provision of organic matter to the soil.
Soil Management Strategies in Organic Almond Orchards: Implications for Soil Rehabilitation and Nut Quality
Authors: Cárceles Rodríguez Belén Cárceles , Durán Zuazo Víctor Hugo Durán , Herencia Galán Juan Francisco Herencia , Lipan Leontina , Soriano Miguel , Hernández Francisca , Sendra Esther , Carbonell-Barrachina Ángel Antonio , Ruiz Baltasar Gálvez , García-Tejero Iván Francisco
Published: March 2023

The implementation of soil conservation measures is essential to promote sustainable crop production in the Mediterranean region. In an organic rainfed almond orchard located in Lanjarón (SE, Spain), a study carried out during 2016–2021 analyzed the influence of different soil management strategies (SMSs) (TT, traditional tillage; NT, no tillage; VF, cover of Vicia faba; VS, cover of Vicia sativa; VS-VE, cover of Vicia sativa and Vicia ervilia) on some selected physical (bulk density, available water content, and aggregate stability), chemical (pH, electrical conductivity, soil-organic content, N, P, K, and micronutrients), and biological (microbial activity) soil properties, relevant to soil health, and their implications for yield and almond quality (physical and chemical). Our results showed that the SMS with legume cover improves soil properties, which had a favorable effect on soil health. The mean almond yield was not significantly affected by the SMS applied, being 315.9, 256.4, 229.1, 212.5, and 176.6 kg ha−1 year−1 for TT, VF, VS-VE, VS, and NT, respectively. Regarding the almond nut quality, the strategy based on implementation of legume cover increased the almond antioxidant activity and the total polyphenol content, which would improve their nutritional value. Here we showed how the use of sustainable SMSs improved the soil properties compared to traditional tillage in rainfed organic almonds, allowing the long-term sustainability of agroecosystems while at the same time obtaining higher nutritional quality almonds.
A VBA-Based Field Water Balance Model for Efficient Irrigation Water Management of Corn (Zea mays L.)
Authors: Sadsad Jeric S. , Ella Victor B. , Lampayan Rubenito M. , Sta. Cruz Pompe C.
Published: March 2023

A field water balance model for efficient irrigation water management of corn was developed using Excel VBA. The model consists of five sub-components or modules, namely, (1) a plant subcomponent, (2) an effective rainfall subcomponent, (3) an evapotranspiration subcomponent, (4) a soil water dynamics subcomponent for the modeling of water flow into and within the soil layers, and (5) an irrigation subcomponent for the estimation of the required amount and timing of irrigation. The model was calibrated and validated using observed data from field experiments and the results showed a reasonably good agreement between the observed and simulated soil moisture values (MAE = 5.76 mm to 12.00 mm, RMSE = 6.83 mm to 13.12 mm, NRMSE = 0.102 to 0.196, and NSE = 0.37 to 0.90). The simulations emphasized that a significant amount of water savings can be achieved when rainfall is properly accounted for in managing water in the field, and that the frequency of rainfall occurrences is as important as the magnitude of rainfall received by the crops. The wide-ranging user-friendliness and simplicity of the model developed in this study can pave the way to eliminating the barriers which cause farmers to resist advancements in their farming practices as the model can easily be used not only by researchers and scientists but also by farmers, especially those with basic knowledge of spreadsheets.
Recent Progress in Genetic Transformation and Gene Editing Technology in Cucurbit Crops
Authors: Feng Jing , Wang Naonao , Li Yang , Wang Huihui , Zhang Wenna , Wang Huasen , Chai Sen
Published: March 2023

Cucurbits (Cucurbitaceae) include major horticultural crops with high nutritional and economic value that also serve as model plants for studying plant development and crop improvement. Conventional breeding methods have made important contributions to the production of cucurbit crops but have led to a breeding bottleneck because of the narrow genetic bases and low variation rates of these crops. With the development of molecular techniques, innovations in germplasm development through transgenesis and gene editing have led to breakthroughs in horticultural crop breeding. Although the development of genetic transformation and gene editing techniques for cucurbit crops has lagged behind that for other major crops, great progress has been made in recent years. Here, we summarize recent advances in improving the genetic transformation efficiency of cucurbit crops, including the screening of germplasm and the application of physical treatments, morphogenic genes, and selection markers. In addition, we review the application of gene editing technology to cucurbit crops, including CRISPR (clustered regularly interspaced short palindromic repeat)/Cas9 (CRISPR-associated nuclease 9)-mediated gene knockout and base editing. This work provides a reference for improving genetic transformation efficiency and gene editing technology for cucurbit crops.
Genome-Wide Analysis and Expression of MYC Family Genes in Tomato and the Functional Identification of slmyc1 in Response to Salt and Drought Stress
Authors: Feng Yang , Zeng Senlin , Yan Jinping , Li Kunzhi , Xu Huini
Published: March 2023

Myelocytomatosis (MYC) transcription factors are crucial mediators of the jasmonate signaling pathway, which mediates the growth and developmental processes of plants. However, the function of MYC genes in tomato, Solanum lycopersicum (SlMYC), remains poorly understood. In this study, we have identified 14 non-redundant SlMYC genes across the genome of tomatoes. Six of the twelve chromosomes included these genes, and four syntenic pairs of SlMYC were identified. According to the results of phylogenetic analysis, 14 SlMYC genes were clustered into classes I, II, III, and IV, and their functional domains were predicted. The SlMYC upstream promoter region contained a variety of light-, stress-, and hormone-response regulatory elements. The expression of the 14 SlMYC genes differed significantly across organs. SlMYCs primarily showed an upregulation trend after methyl jasmonate (MeJA) treatment. In contrast, after treatment with sodium chloride (NaCl), SlMYCs showed a trend of downregulation. However, there were differences in the expression patterns of SlMYCs after mannitol treatment. Using clustered regularly interspaced short palindromic repeats/Cas 9 (CRISPR/Cas 9) technology, the loss-of-function of SlMYC1 (slmyc1) was obtained. The slmyc1 tomato plants demonstrated reduced resistance to NaCl and mannitol stress compared to wild-type plants due to their shorter root length and higher reactive oxygen species (ROS) content. In brief, this study provides valuable information about the taxonomy of the SlMYC genes in tomato. It establishes a foundation for future research on the mechanism by which SlMYC influences plant development and stress response.
SpHsfA4c from Sedum plumbizincicola Enhances Cd Tolerance by the AsA–GSH Pathway in Transgenic Populus × canescens
Authors: Yu Miao , He Zhengquan , Li Shaocui , Lu Zhuchou , Chen Juanjuan , Qu Tongbao , Xu Jing , Qiu Wenmin , Han Xiaojiao , Zhuo Renying
Published: March 2023

The ascorbate (AsA)–glutathione (GSH) metabolism pathway is an important antioxidant system in cadmium (Cd) detoxification; the AsA–GSHpathway is generally regulated by a specific set of functional genes. However, transcription factors involved in AsA–GSH pathway have yet to be identified. Herein, we transformed a heat shock transcription factor SpHsfA4c from Sedum plumbizincicola into Populus. × canescens. Under 100 μM CdCl2 stress for 30 d, the leaf chlorosis of wild-type poplars (WT) is more serious than that in transgenic poplars. The root biomass, shoot biomass and tolerance index (TIs) of transgenic poplars were higher than those in WT. In addition, transgenic poplars have higher Cd2+ uptake and Cd content. Compared with WT, the contents of hydrogen peroxide (H2O2) and superoxide anion (O2•−) in transgenic poplars were significantly reduced in leaves under Cd treatment. The expression levels of five enzymes (ascorbate peroxidase (APX), catalases (CAT), superoxide dismutase (SOD), peroxidase (POD) and glutathione S-transferase (GST)) were higher in transgenic poplars than those in WT. Transgenic poplars contained higher concentrations of intermediate metabolites, including GSH, AsA and phytochelatins (PCs), and a higher GSH/GSSG ratio in the AsA–GSH metabolism pathway. In Fourier transform infrared (FTIR) spectra, the characteristic peaks indicated that the contents of cysteine, GSH and AsA in transgenic poplars were exceeded compared to those in WT. These results suggested that SpHsfA4c can activate the AsA–GSH metabolism pathway to reduce Cd-associated oxidative stress. Therefore, overexpressing SpHsfA4c in P. × canescens can give rise to a superior Cd tolerance. Our results provide a theoretical significance for breeding potential new germplasm resources with high biomass and high Cd tolerance for remediation of soil heavy metal pollution.
Effects of Extruded Corn with Different Gelatinization Degrees on Feed Preference, Growth Performance, Nutrient Digestibility, and Fecal Microbiota of Weaning Piglets
Authors: Deng Bo , Wu Jie , Liu Xuan , Ma Qian , Tao Xin , Qi Keke , Diao Xinping , Xu Ziwei
Published: March 2023

Preference and performance trials were conducted to investigate the effects of extruded corn with different degrees of gelatinization on the feed preference, growth performance, nutrient digestibility, and fecal microbiota of weaning piglets. In the preference trial, 144 piglets who were 35 days old were weighed and allotted to six treatments with four replications per treatment. Piglets in each treatment group were allowed to choose two of the following four corn-supplemented diets: conventional corn (NC) or extruded corn with low (LEC; 41.82% gelatinization), medium (MEC; 62.60% gelatinization), or high (HEC; 89.93% gelatinization) degrees of gelatinization for 18 days. The results showed that the piglets preferred diets supplemented with a low degree of gelatinization of extruded corn. In the performance trial, 144 piglets who were 35 days old were weighed and allotted into four treatments with six replications per treatment. Piglets in each treatment were fed one of the four diets for 28 days. The results showed that LEC and MEC decreased the feed:gain ratio at 14–28 days and 0–28 days, respectively, and increased the apparent total tract digestibility (ATTD) of crude protein compared with NC. Meanwhile, LEC increased the total protein and globulin content in the plasma on day 14, and MEC increased the ATTD of ether extract (EE) compared with NC. Extruded corn with low and medium degrees of gelatinization increased the abundance of Bacteroidetes at the phylum level and Lactobacillus, Alloprevotella, Prevotellaceae_UCG-03, and Prevotella_2 at the genus level. The results showed that extruded corn can improve feed preference, increase growth performance and nutrient digestibility, and modify gut microbiota, and the ideal degree of gelatinization is approximately 41.82–62.60%.
Effect of Palm Kernel Cake Supplementation on Voluntary Feed Intake, In Situ Rumen Degradability and Performance in Buffaloes in the Eastern Amazon
Authors: Amaral-Júnior João Maria do , Morais Eziquiel de , Lima Alyne Cristina Sodré , Martorano Lucieta Guerreiro , Nahúm Benjamim de Souza , Sousa Luciano Fernandes , Lourenço-Júnior José de Brito , Rodrigues Thomaz Cyro Guimarães de Carvalho , Silva Jamile Andréa Rodrigues da , Silva Artur Luiz da Costa , Maciel e Silva André Guimarães
Published: March 2023

The objective was to evaluate the effects of palm kernel cake (PKC) supplementation on voluntary feed intake, in situ rumen degradability and performance in the wettest (WS—January to June) and less rainy seasons (LR—July to December) in the eastern Amazon. A total of 52 crossbred buffaloes that were neither lactating nor gestating were used, with 24 for the LR, aged 34 ± 04 months and an initial average weight of 503 ± 48 kg, and 24 for the WS aged 40 ± 04 months with an average weight of 605 ± 56 kg. The four treatments (levels of PKC in relation to body weight) were distributed in a completely randomized design, with 0% (PKC0), 0.25% (PKC0.2), 0.5% (PKC0.5) and 1% (PKC1) with six repetitions. The animals were housed in Marandu grass paddocks, intermittently, with access to water and mineral mixture ad libitum. Degradability was evaluated by the in situ bag technique in four other crossbred buffaloes with rumen cannulae, in a 4 × 4 Latin square (four periods and four treatments). The inclusion of PKC increased supplement consumption and production of ether extracts and reduced the intake of forage and non-fibrous carbohydrates. The dry matter degradability of Marandu grass was not affected; however, the fermentation kinetics in neutral detergent fiber (NDF) differed between the treatments. The co-product dry matter colonization time was greater in PKC1 and the highest effective degradability rates were from PKC0, but the productive performance of the animals was not influenced. Supplementation of buffaloes with PKC is recommended for up to 1% of body weight.
A New Parasitic Archamoeba Causing Systemic Granulomatous Disease in Goldfish Extends the Diversity of Pathogenic Endolimax spp.
Authors: Constenla Maria , Palenzuela Oswaldo
Published: March 2023

Endolimax is a genus of intestinal amoebae which stands among the least known human protists. Previous studies on amoebic systemic granulomatosis of a marine fish (Solea senegalensis) resulted in the unexpected characterization of a new organism which was related to Endolimax and named E. piscium. The existence of multiple reports of systemic granulomatosis caused presumptively by unidentified amoebae in goldfish lead us to investigate the organism involved in goldfish disease. Analysed goldfish presented small whitish nodules in the kidney, which correspond to chronic granulomatous inflammatory reactions with a ring-layer of amoebae in the periphery. Amoebae were amitochondriate and were located in a parasitophorous vacuole within macrophages, as previous studies on this condition in goldfish and other freshwater fish pointed out. SSU rDNA characterization confirmed a new Endolimax lineage which appears closely related to E. piscium, but the molecular evidence, distinct pathological features and lack of ecological overlapping between the hosts support their assignment to a new species, E. carassius. The results support the existence of a considerable unexplored diversity of Endolimax spp. among fish, and their proper characterization can contribute to an understanding of Archamoebae evolution and pathogenic potential.
The Effect of Treatment with Oestradiol Benzoate on Oestrus Expression and Endometrial Oedema in Anovulatory and Cyclic Mares
Authors: Silva Elisa S. M. , Newcombe John R. , Cuervo-Arango Juan
Published: March 2023

Oestrogens treatment is often used to induce oestrus behaviour in anoestrous mares to aid in the collection of stallion semen and as recipient mares to receive embryos when combined with progesterone. However, there are no studies to describe the effect of dose and individual mare on the intensity and duration of the response, in both anoestrous and cyclic mares. In Experiment 1, 13 anoestrous mares were treated with one of five doses of oestradiol benzoate (OB) (1, 1.5, 2, 3 and 4 mg) per mare in five consecutive treatment periods (n = 65), to determine the response in terms of endometrial oedema and oestrous behaviour. Experiment 2 and 3 used 3 mg of OB in cyclic mares to confirm or deny the presence of an active corpus luteum (CL). There was a dose rate of OB and individual mare effect (p < 0.05) on the intensity and persistence of endometrial oedema and oestrous behaviour. A total of 2 mg OB was enough to induce endometrial oedema and oestrous behaviour within 48 h in most mares. Mares with an active CL did not show endometrial oedema following treatment of 3 mg OB.
Feeding Habits of Dentex maroccanus and the Effect of Body Size
Authors: Mina Amalia , Mytilineou Chryssi , Kaminas Alexandros , Rekleiti Anthi , Siapatis Apostolos , Anastasopoulou Aikaterini
Published: March 2023

The feeding habits of organisms are important elements in their ecological role and are affected by several factors. The present study provides for the first time information on the diet and feeding strategy of Dentex maroccanus (Valenciennes, 1830) and examines the effects of various factors on the species’ feeding activity. Various indices (vacuity index, numerical and weight proportion, frequency of occurrence, alimentary coefficient, index of relative importance, diet breadth and overlap, Shannon–Wiener index, and trophic level) were estimated. The diet of the species consisted of 18 different prey taxa. The most important prey taxon was Decapoda. The study of the feeding strategy showed the narrow width of the species. Body size was found to significantly affect the species’ feeding habits. Polychaeta and Stomatopoda were found only in individuals with size ≥165 mm, Bivalvia mainly in sizes ≤120 mm, and Decapoda in the intermediate sizes. The largest individuals showed the lowest overlap with all other size groups. The trophic level increased from 3.7 in young individuals to 4.0 in larger sizes, indicating the carnivorous character of the species. The results of the present work contribute to a better knowledge of the species’ feeding ecology.
The Role of Human–Animal Bonds for People Experiencing Crisis Situations
Authors: Oosthuizen Karl , Haase Bianca , Ravulo Jioji , Lomax Sabrina , Ma Gemma
Published: March 2023

Human–animal bonds, by providing social support, have been shown to improve the health and wellbeing of pet owners, especially those experiencing a crisis situation. The human–animal bond for people in crisis situations is complex and multifaceted, as it has shown to improve health, whilst it can also discourage people from seeking help, due to fears of leaving their pet behind. The purpose of the study is to capture and to assess the role of the human–animal bond for people in crisis situations. Semi-structured interviews were conducted with pet owners involved in the RSPCA NSW Community Programs (n = 13) in 2021 and 2022. The findings of the study indicate that the human–animal bond is highly valued by people experiencing crisis situations, that the human–animal bonds can affect people’s ability to seek help or refuge, and that the human–animal bond helps people to recover after a crisis. The findings suggest that community crisis support services, prison systems, hospital systems, emergency housing, and government legislation should recognize and aim to preserve this bond to provide the best help for people experiencing crisis situations.
Animal Welfare Assessment Protocols for Bulls in Artificial Insemination Centers: Requirements, Principles, and Criteria
Authors: Cojkic Aleksandar , Morrell Jane M.
Published: March 2023

Animal welfare is a complex subject; as such, it requires a multidimensional approach with the main aim of providing the animals with the “five freedoms”. The violations of any one of these freedoms could have an influence on animal wellbeing on different levels. Over the years, many welfare quality protocols were developed in the EU thanks to the Welfare Quality® project. Unfortunately, there is a lack of such summarized information about bull welfare assessment in artificial insemination stations or about how disturbed welfare can be reflected in their productivity. Animal reproduction is the basis for the production of meat and milk; therefore, factors contributing to reduced fertility in bulls are not only indicators of animal welfare but also have implications for human health and the environment. Optimizing the reproductive efficiency of bulls at an early age can help to reduce greenhouse gas emissions. In this review, welfare quality assessment will be evaluated for these production animals using reproduction efficiency as a key area, focusing on stress as a main effect of poor animal welfare and, thereby, reduced fertility. We will address various welfare aspects and possible changes in resources or management to improve outcomes.
In Vitro Viral Recovery Yields under Different Re-Suspension Buffers in Iron Flocculation to Concentrate Viral Hemorrhagic Septicemia Virus Genotype IVa in Seawater
Authors: Ryu Na-Gyeong , Baek Eun-Jin , Kim Min-Jae , Kim Kwang-Il
Published: March 2023

Iron flocculation is widely used to concentrate viruses in water, followed by Fe-virus flocculate formation, collection, and elution. In the elution stage, an oxalic or ascorbic acid re-suspension buffer dissolved iron hydroxide. After the concentration of viral hemorrhagic septicemia virus (VHSV) in seawater (1 × 101 to 1 × 105 viral genome copies or plaque-forming unit (PFU)/mL), the recovery yield of the viral genome using quantitative real-time PCR (qRT-PCR) and viral infectivity using the plaque assay were investigated to evaluate the validity of the two re-suspension buffers to concentrate VHSV. The mean viral genome recovery yield with oxalic and ascorbic acid was 71.2 ± 12.3% and 81.4 ± 9.5%, respectively. The mean viral infective recovery yields based on the PFU were significantly different between the two buffers at 23.8 ± 22.7% (oxalic acid) and 4.4 ± 2.7% (ascorbic acid). Notably, although oxalic acid maintains viral infectivity over 60% at a viral concentration above 105 PFU/mL, the infective VHSVs were not sufficiently recovered at a low viral concentration (102 PFU/mL, <10%). To support this result, concentrated VHSV was inoculated in Epithelioma papulosum cyprini (EPC) cells to confirm cell viability, viral gene expression, and extracellular viral titer. All results demonstrated that oxalic acid buffer was superior to ascorbic acid buffer in preserving viral infectivity.
Growth Performance, Antioxidant and Immunity Capacity Were Significantly Affected by Feeding Fermented Soybean Meal in Juvenile Coho Salmon (Oncorhynchus kisutch)
Authors: Zhang Qin , Li Fanghui , Guo Mengjie , Qin Meilan , Wang Jiajing , Yu Hairui , Xu Jian , Liu Yongqiang , Tong Tong
Published: March 2023

This study aims to investigate the effects of partial dietary replacement of fish meal with unfermented and/or fermented soybean meal (fermented by Bacillus cereus) supplemented on the growth performance, whole-body composition, antioxidant and immunity capacity, and their related gene expression of juvenile coho salmon (Oncorhynchus kisutch). Four groups of juveniles (initial weight 159.63 ± 9.54 g) at 6 months of age in triplicate were fed for 12 weeks on four different iso-nitrogen (about 41% dietary protein) and iso-lipid (about 15% dietary lipid) experimental diets. The main results were: Compared with the control diet, the diet with replaced 10% fish meal protein with fermented soybean meal protein supplementation can significantly (p < 0.05) influence the expression of superoxide dismutase, catalase, glutathione peroxidase, glutathione S-transferase, nuclear factor erythroid 2-related factor 2, tumor necrosis factor α and interleukin-6 genes, the growth performance, the serum biochemical indices, and the activity of antioxidant and immunity enzymes. However, there was no significant effect (p > 0.05) on the survival rate (SR) and whole-body composition in the juveniles among the experimental groups. In conclusion, the diet with replaced 10% fish meal protein with fermented soybean meal protein supplementation could significantly increase the growth performance, antioxidant and immunity capacity, and their related gene expression of juveniles.
In Situ Degradation Kinetics of 25 Feedstuffs and the Selection of Time Points in Mathematical Statistics
Authors: Li Sen , He Liwen , Mo Fang , Zhang Wei
Published: March 2023

Rumen degradation kinetics of 25 feedstuffs (six protein feeds, nine energy feeds and ten roughages) were first determined using the nylon bag technique in situ and the differences of degradation characteristics fitted with five or seven time points measuring data were evaluated with the goodness of fit (R2) of degradation curves. Protein and energy feeds were incubated for 2, 4, 8, 16, 24, 36, 48 h, roughages were incubated for 4, 8, 16, 24, 36, 48, 72 h, where three and six data sets of five time points were screened out, respectively. Only the degradation parameters a (rapidly degraded proportion), b (slowly degraded proportion) and c (degradation rate of slowly degraded proportion) of several feeds at five time points were significantly different from those at seven time points (p < 0.05), and the others were not significant (p > 0.05). The R2 of the degradation curves obtained at five time points was closer to 1, indicating that the fitting obtained at five time points was more accurate in predicting the real-time rumen degradation rate of feed. These results indicate that it is feasible to determine the rumen degradation characteristics of feedstuffs by only setting five measuring time points.
Lower Concentrations of Amphotericin B Combined with Ent-Hardwickiic Acid Are Effective against Candida Strains
Authors: Teixeira Maria V. Sousa , Aldana-Mejía Jennyfer A. , da Silva Ferreira Márcia E. , Furtado Niege A. J. Cardoso
Published: March 2023

Life-threatening Candida infections have increased with the COVID-19 pandemic, and the already limited arsenal of antifungal drugs has become even more restricted due to its side effects associated with complications after SARS-CoV-2 infection. Drug combination strategies have the potential to reduce the risk of side effects without loss of therapeutic efficacy. The aim of this study was to evaluate the combination of ent-hardwickiic acid with low concentrations of amphotericin B against Candida strains. The minimum inhibitory concentration (MIC) values were determined for amphotericin B and ent-hardwickiic acid as isolated compounds and for 77 combinations of amphotericin B and ent-hardwickiic acid concentrations that were assessed by using the checkerboard microdilution method. Time–kill assays were performed in order to assess the fungistatic or fungicidal nature of the different combinations. The strategy of combining both compounds markedly reduced the MIC values from 16 µg/mL to 1 µg/mL of amphotericin B and from 12.5 µg/mL to 6.25 µg/mL of ent-hardwickiic acid, from isolated to combined, against C. albicans resistant to azoles. The combination of 1 µg/mL of amphotericin B with 6.25 µg/mL of ent-hardwickiic acid killed all the cells of the same strain within four hours of incubation.
Cytotoxicity and Antimicrobial Resistance of Aeromonas Strains Isolated from Fresh Produce and Irrigation Water
Authors: Pintor-Cora Alberto , Tapia Olga , Elexpuru-Zabaleta María , Ruiz de Alegría Carlos , Rodríguez-Calleja Jose M. , Santos Jesús A. , Ramos-Vivas Jose
Published: March 2023

The genus Aeromonas has received constant attention in different areas, from aquaculture and veterinary medicine to food safety, where more and more frequent isolates are occurring with increased resistance to antibiotics. The present paper studied the interaction of Aeromonas strains isolated from fresh produce and water with different eukaryotic cell types with the aim of better understanding the cytotoxic capacity of these strains. To study host-cell pathogen interactions in Aeromonas, we used HT-29, Vero, J774A.1, and primary mouse embryonic fibroblasts. These interactions were analyzed by confocal microscopy to determine the cytotoxicity of the strains. We also used Galleria mellonella larvae to test their pathogenicity in this experimental model. Our results demonstrated that two strains showed high cytotoxicity in epithelial cells, fibroblasts, and macrophages. Furthermore, these strains showed high virulence using the G. mellonella model. All strains used in this paper generally showed low levels of resistance to the different families of the antibiotics being tested. These results indicated that some strains of Aeromonas present in vegetables and water pose a potential health hazard, displaying very high in vitro and in vivo virulence. This pathogenic potential, and some recent concerning findings on antimicrobial resistance in Aeromonas, encourage further efforts in examining the precise significance of Aeromonas strains isolated from foods for human consumption.
Effect of Antibiotic Eye Drops on the Nasal Microbiome in Healthy Subjects—A Pilot Study
Authors: Nadvornik Clemens , Kallab Martin , Hommer Nikolaus , Schlatter Andreas , Stengel Theresa , Garhöfer Gerhard , Zeitlinger Markus , Eberl Sabine , Klymiuk Ingeborg , Trajanoski Slave , Nehr Marion , Makristathis Athanasios , Schmidl Doreen , Nussbaumer-Proell Alina
Published: March 2023

Background: Antibiotic eye drops are frequently used in clinical practice. Due to the anatomical connection via the nasolacrimal duct, it seems possible that they have an influence on the nasal/pharyngeal microbiome. This was investigated by using two different commonly used antibiotic eye drops. Methods: 20 subjects were randomized to four groups of five subjects receiving eye drops containing gentamicin, ciprofloxacin, or, as controls, unpreserved povidone or benzalkonium chloride-preserved povidone. Nasal and pharyngeal swabs were performed before and after the instillation period. Swabs were analyzed by Illumina next-generation sequencing (NGS)-based 16S rRNA analysis. Bacterial culture was performed on solid media, and bacterial isolates were identified to the species level by MALDI-TOF MS. Species-dependent antimicrobial susceptibility testing was performed using single isolates and pools of isolates. Results: Bacterial richness in the nose increased numerically from 163 ± 30 to 243 ± 100 OTUs (gentamicin) and from 114 ± 17 to 144 ± 45 OTUs (ciprofloxacin). Phylogenetic diversity index (pd) of different bacterial strains in the nasal microbiome increased from 12.4 ± 1.0 to 16.9 ± 5.6 pd (gentamicin) and from 10.2 ± 1.4 to 11.8 ± 3.1 pd (ciprofloxacin). Unpreserved povidone eye drops resulted in minimal changes in bacterial counts. Preservative-containing povidone eye drops resulted in no change. A minor increase (1–2-fold) in the minimal inhibitory concentration (MIC) was observed in single streptococcal isolates. Conclusions: Antibiotic eye drops could affect the nasal microbiome. After an instillation period of seven days, an increase in the diversity and richness of bacterial strains in the nasal microbiome was observed.
Disulfiram: Mechanisms, Applications, and Challenges
Authors: Lanz Jenna , Biniaz-Harris Nicholas , Kuvaldina Mara , Jain Samta , Lewis Kim , Fallon Brian A.
Published: March 2023

Background: Since disulfiram’s discovery in the 1940s and its FDA approval for alcohol use disorder, other indications have been investigated. This review describes potential clinical applications, associated risks, and challenges. Methods: For this narrative review, a PubMed search was conducted for articles addressing in vivo studies of disulfiram with an emphasis on drug repurposing for the treatment of human diseases. The key search terms were “disulfiram” and “Antabuse”. Animal studies and in vitro studies highlighting important mechanisms and safety issues were also included. Results: In total, 196 sources addressing our research focus spanning 1948–2022 were selected for inclusion. In addition to alcohol use disorder, emerging data support a potential role for disulfiram in the treatment of other addictions (e.g., cocaine), infections (e.g., bacteria such as Staphylococcus aureus and Borrelia burgdorferi, viruses, parasites), inflammatory conditions, neurological diseases, and cancers. The side effects range from minor to life-threatening, with lower doses conveying less risk. Caution in human use is needed due to the considerable inter-subject variability in disulfiram pharmacokinetics. Conclusions: While disulfiram has promise as a “repurposed” agent in human disease, its risk profile is of concern. Animal studies and well-controlled clinical trials are needed to assess its safety and efficacy for non-alcohol-related indications.
Rutin Prevents Dexamethasone-Induced Muscle Loss in C2C12 Myotube and Mouse Model by Controlling FOXO3-Dependent Signaling
Authors: Hah Young-Sool , Lee Won Keong , Lee Seung-Jun , Lee Sang Yeob , Seo Jin-Hee , Kim Eun Ji , Choe Yeong-In , Kim Sang Gon , Yoo Jun-Il
Published: March 2023

One of the causes of sarcopenia is that homeostasis between anabolism and catabolism breaks down due to muscle metabolism changes. Rutin has shown antioxidant and anti-inflammatory effects in various diseases, but there are few studies on the effect on muscle loss with aging. The effect of rutin on muscle loss was evaluated using dexamethasone-induced muscle loss C2C12 myoblast and mouse model. In the group treated with dexamethasone, the muscle weight of gastrocnemius (GA), tibialis anterior (TA), and extensor digitorum longus (EDL) in the mouse model were significantly decreased (p < 0.0001 in GA, p < 0.0001 in TA, and p < 0.001 in EDL) but recovered (p < 0.01 in GA, p < 0.0001 in TA, and p < 0.01 in EDL) when treated with rutin. MAFbx, MuRF1, and FOXO3 protein expression of C2C12 myoblast were significantly increased (p < 0.01 in MAFbx, p < 0.01 in MuRF1, and p < 0.01 in FOXO3) when treated with dexamethasone, but it was recovered (p < 0.01 in MAFbx, p < 0.01 in MuRF1, and p < 0.01 in FOXO3) when rutin was treated. In addition, MAFbx and FOXO3 protein expression in GA of mouse model was significantly increased (p < 0.0001 in MAFbx and p < 0.001 in FOXO3) when treated with dexamethasone, but it was also recovered (p < 0.01 in MAFbx and p < 0.001 in FOXO3) when rutin was treated. The present study shows that rutin blocks the FOXO3/MAFbx and FOXO3/MuRf1 pathways to prevent protein catabolism. Therefore, rutin could be a potential agent for muscle loss such as sarcopenia through the blocking ubiquitin-proteasome pathway associated with catabolic protein degradation.
Metallothionein 3 Inhibits 3T3-L1 Adipocyte Differentiation via Reduction of Reactive Oxygen Species
Authors: Li Yuankuan , Lee Sung Ho , Piao Meiyu , Kim Hyung Sik , Lee Kwang Youl
Published: March 2023

Metallothionein 3 (MT3), also known as a neuronal growth-inhibitory factor, is a member of the metallothionein family and is involved in a variety of biological functions, including protection against metal toxicity and reactive oxygen species (ROS). However, less is known about the role of MT3 in the differentiation of 3T3-L1 cells into adipocytes. In this study, we observed that MT3 levels were downregulated during 3T3-L1 adipocyte differentiation. Mt3 overexpression inhibited adipocyte differentiation and reduced the levels of the adipogenic transcription factors C/EBPα and PPARγ. Further analyses showed that MT3 also suppressed the transcriptional activity of PPARγ, and this effect was not mediated by a direct interaction between MT3 with PPARγ. In addition, Mt3 overexpression resulted in a decrease in ROS levels during early adipocyte differentiation, while treatment with antimycin A, which induces ROS generation, restored the ROS levels. Mt3 knockdown, on the other hand, elevated ROS levels, which were suppressed upon treatment with the antioxidant N-acetylcysteine. Our findings indicate a previously unknown role of MT3 in the differentiation of 3T3-L1 cells into adipocytes and provide a potential novel target that might facilitate obesity treatment.
Fatty Acid Binding Proteins 3 and 4 Predict Both All-Cause and Cardiovascular Mortality in Subjects with Chronic Heart Failure and Type 2 Diabetes Mellitus
Authors: Rodríguez-Calvo Ricardo , Granado-Casas Minerva , Pérez-Montes de Oca Alejandra , Julian María Teresa , Domingo Mar , Codina Pau , Santiago-Vacas Evelyn , Cediel Germán , Julve Josep , Rossell Joana , Masana Lluís , Mauricio Didac , Lupón Josep , Bayes-Genis Antoni , Alonso Núria
Published: March 2023

Subjects with type 2 diabetes mellitus (T2D) are at increased risk for heart failure (HF). The cardiac-specific (FABP3) and adipose-tissue-specific (FABP4) types of the fatty acid binding proteins have been associated with both all-cause and cardiovascular (CV) mortality. The aim of this study was to explore the prognosis value of FABP3 and FABP4 in ambulatory subjects with chronic HF (CHF), with and without T2D. A prospective study involving 240 ambulatory CHF subjects was performed. Patients were followed-up for a mean of 5.78 ± 3.30 years and cause of death (if any) was recorded. Primary endpoints were defined as all-cause and CV death, and a composite endpoint that included CV death or hospitalization for HF was included as a secondary endpoint. Baseline serum samples were obtained and the serum FABP3 and FABP4 concentrations were assessed by sandwich enzyme-linked immunosorbent assay. Survival analysis was performed with multivariable Cox regressions, using Fine and Gray competing risks models when needed, to explore the prognostic value of FABP3 and FABP4 concentrations, adjusting for potential confounders. Type 2 diabetes mellitus was highly prevalent, accounting for 47.5% for total subjects with CHF. Subjects with T2D showed higher mortality rates (T2D: 69.30%; non-T2D: 50.79%, p = 0.004) and higher serum FABP3 (1829.3 (1104.9–3440.5) pg/mL vs. 1396.05 (820.3–2362.16) pg/mL, p = 0.007) and FABP4 (45.5 (27.6–79.8) ng/mL vs. 34.1 (24.09–55.3) ng/mL, p = 0.006) concentrations compared with non-T2D CHF subjects. In the whole study cohort, FABP3 was independently associated with all-cause death, and both FABP3 and FABP4 concentrations were associated with CV mortality. The predictive values of these two molecules for all-cause (FABP3: HR 1.25, 95% CI 1.09–1.44; p = 0.002. FABP4: HR 2.21, 95% CI 1.12–4.36; p = 0.023) and CV mortality (FABP3: HR 1.28, 95% CI 1.09–1.50; p = 0.002. FABP4: HR 4.19, 95% CI 2.21–7.95; p < 0.001) were only statistically significant in the subgroup of subjects with T2D. Notably, FABP4 (HR 2.07, 95% CI 1.11–3.87; p = 0.022), but not FABP3, also predicted the occurrence of the composite endpoint (death or hospitalization for HF) only in subjects with T2D. All these associations were not found in CHF subjects without T2D. Our findings support the usefulness of serum FABP3 and FABP4 concentrations as independent predictors for the occurrence of all-cause and CV mortality in ambulatory subjects with CHF with T2D.
Entomotherapeutic Role of Periplaneta americana Extract in Alleviating Aluminum Oxide Nanoparticles-Induced Testicular Oxidative Impairment in Migratory Locusts (Locusta migratoria) as an Ecotoxicological Model
Authors: Arafat Esraa A. , El-Sayed Doaa S. , Hussein Hussein K. , Flaven-Pouchon Justin , Moussian Bernard , El-Samad Lamia M. , El Wakil Abeer , Hassan Mohamed A.
Published: March 2023

In this study, we shed light for the first time on the usage of migratory locusts (Locusta migratoria) as an insect model to investigate the nanotoxicological influence of aluminum oxide (Al2O3) nanoparticles at low doses on testes, and evaluate the capacity of a whole-body extract of American cockroaches (Periplaneta americana) (PAE) to attenuate Al2O3 NPs-induced toxicity. Energy dispersive X-ray microanalyzer (EDX) analysis verified the bioaccumulation of Al in testicular tissues due to its liberation from Al2O3 NPs, implying their penetration into the blood–testis barrier. Remarkably, toxicity with Al engendered disorders of antioxidant and stress biomarkers associated with substantial DNA damage and cell apoptosis. Furthermore, histopathological and ultrastructural analyses manifested significant aberrations in the testicular tissues from the group exposed to Al2O3 NPs, indicating the overproduction of reactive oxygen species (ROS). Molecular docking analysis emphasized the antioxidant capacity of some compounds derived from PAE. Thus, pretreatment with PAE counteracted the detrimental effects of Al in the testes, revealing antioxidant properties and thwarting DNA impairment and cell apoptosis. Moreover, histological and ultrastructural examinations revealed no anomalies in the testes. Overall, these findings substantiate the potential applications of PAE in preventing the testicular impairment of L. migratoria and the conceivable utilization of locusts for nanotoxicology studies.
Interference Suppression in EEG Dipole Source Localization through Reduced-Rank Beamforming
Authors: Jiménez-Cruz Eduardo , Gutiérrez David
Published: March 2023

In this paper, we propose new neural activity indices for the solution of the inverse problem of localizing sources of cortical activity from electroencephalography (EEG) measurements. Such indices are based on reduced-rank beamformers, specifically the generalized sidelobe canceler (GSC), and with the purpose of suppressing the contribution of interfering sources and noise. Here, the GSC is modified with an adaptive blocking matrix (ABM) to optimally estimate and later suppress unwanted brain sources. With respect to the rank-reduction, this is achieved through the cross-spectral metrics (CSM) as they give a sense of the affinity of the beamformers’ eigenstructure to the orthogonal subspace of noise an interference. Based on that, two different neural indices are proposed for the assessment of brain activation. Our realistic simulations show that a more consistent source localization is achieved through the proposed indices in comparison to the use of the traditional full-rank approach, specifically for brain sources embedded in high background activity that originates at the brain cortex and thalamus. We also prove the applicability of our methods on the localization of sources on the visual cortex produced by steady-state visual-evoked potentials.
Tor Anonymous Traffic Identification Based on Parallelizing Dilated Convolutional Network
Authors: Lu Yunan , Cai Manchun , Zhao Ce , Zhao Weiyi
Published: March 2023

The widespread use of the onion browser (Tor) has provided a breeding ground for the proliferation of cybercriminal activities and the Tor anonymous traffic identification method has been used to fingerprint anonymous web traffic and identify the websites visited by illegals. Despite the considerable progress in existing methods, problems still exist, such as high training resources required for the identification model, bias in fingerprint features due to the fast iteration of anonymous traffic and singularity in the definition of traffic direction features. On this basis, a Tor anonymous traffic identification model based on parallelizing dilated convolutions multi-feature analysis has been proposed in this paper in order to address these problems and perform better in website fingerprinting. A single-sample augmentation of the traffic data and a model combining multi-layer RBMs and parallelizing dilated convolutions are performed, and binary classification and multi-classification of websites are conducted for different scenarios. Our experiment shows that the proposed Tor anonymous traffic recognition method achieves 94.37% accuracy and gains a significant drop in training time in both closed-world and open-world scenarios. At the same time, the enhanced traffic data enhance the robustness and generalization of our model. With our techniques, our training efficiency has been improved and we are able to achieve the advantage of bi-directional deployability on the communication link.
Application of Fly Ash Obtained from the Incineration of Municipal Solid Waste in Agriculture
Authors: Rusănescu Carmen Otilia , Rusănescu Marin
Published: March 2023

In the current context of the increase in the amount of municipal solid waste as a result of the development of urbanization, in this paper we have analyzed the impact of the use of fly ash obtained from the incineration of municipal solid waste in agriculture on the development of plants as an improver of acidic soils due to the nutrients it contains. We presented ash treatment methods to reduce the content of heavy metals and salts. Based on the studies in the literature, it was found that by adding certain concentrations of fly ash to degraded soils, the quality, porosity, and texture of the soil are improved; the yield of certain crops increases; the water retention capacity of the soil and soil aeration are improved; the density of the soil bulk; the compactness of the soil is reduced; the pH value is optimized; the electrical conductivity of the soil is increased; the crust formation is reduced; and it provides micronutrients to the soil. In the context of the circular economy, by using fly ash as an organic fertilizer in agriculture, the amount of chemical fertilizers harmful to agricultural crops is reduced, the problem of ash storage is solved, and thus it no longer pollutes the environment.
A Novel Deep Learning Method for Predicting RNA-Protein Binding Sites
Authors: Zhao Xueru , Chang Furong , Lv Hehe , Zou Guobing , Zhang Bofeng
Published: March 2023

The cell cycle and biological processes rely on RNA and RNA-binding protein (RBP) interactions. It is crucial to identify the binding sites on RNA. Various deep-learning methods have been used for RNA-binding site prediction. However, they cannot extract the hierarchical features of the RNA secondary structure. Therefore, this paper proposes HPNet, which can automatically identify RNA-binding sites and -binding preferences. HPNet performs feature learning from the two perspectives of the RNA sequence and the RNA secondary structure. A convolutional neural network (CNN), a deep-learning method, is used to learn RNA sequence features in HPNet. To capture the hierarchical information for RNA, we introduced DiffPool into HPNet, a differentiable pooling graph neural network (GNN). A CNN and DiffPool were combined to improve the binding site prediction accuracy by leveraging both RNA sequence features and hierarchical features of the RNA secondary structure. Binding preferences can be extracted based on model outputs and parameters. Overall, the experimental results showed that HPNet achieved a mean area under the curve (AUC) of 94.5% for the benchmark dataset, which was more accurate than the state-of-the-art methods. Moreover, these results demonstrate that the hierarchical features of RNA secondary structure play an essential role in selecting RNA-binding sites.