bluuebunny/crossref_metadata_2025 huggingface dataset:
Potential Vegetation and Carbon Redistribution in Northern North America from Climate Change
Authors: Flanagan Steven , Hurtt George , Fisk Justin , Sahajpal Ritvik , Hansen Matthew , Dolan Katelyn , Sullivan Joe , Zhao Maosheng
Published: January 2016

There are strong relationships between climate and ecosystems. With the prospect of anthropogenic forcing accelerating climate change, there is a need to understand how terrestrial vegetation responds to this change as it influences the carbon balance. Previous studies have primarily addressed this question using empirically based models relating the observed pattern of vegetation and climate, together with scenarios of potential future climate change, to predict how vegetation may redistribute. Unlike previous studies, here we use an advanced mechanistic, individually based, ecosystem model to predict the terrestrial vegetation response from future climate change. The use of such a model opens up opportunities to test with remote sensing data, and the possibility of simulating the transient response to climate change over large domains. The model was first run with a current climatology at half-degree resolution and compared to remote sensing data on dominant plant functional types for northern North America for validation. Future climate data were then used as inputs to predict the equilibrium response of vegetation in terms of dominant plant functional type and carbon redistribution. At the domain scale, total forest cover changed by ~2% and total carbon storage increased by ~8% in response to climate change. These domain level changes were the result of much larger gross changes within the domain. Evergreen forest cover decreased 48% and deciduous forest cover increased 77%. The dominant plant functional type changed on 58% of the sites, while total carbon in deciduous vegetation increased 107% and evergreen vegetation decreased 31%. The percent of terrestrial carbon from deciduous and evergreen plant functional types changed from 27%/73% under current climate conditions, to 54%/46% under future climate conditions. These large predicted changes in vegetation and carbon in response to future climate change are comparable to previous empirically based estimates, and motivate the need for future development with this mechanistic model to estimate the transient response to future climate changes.
Greenhouse Gas Induced Changes in the Seasonal Cycle of the Amazon Basin in Coupled Climate-Vegetation Regional Model
Authors: Justino Flavio , Stordal Frode , Vizy Edward , Cook Kerry , Pereira Marcos
Published: January 2016

Previous work suggests that changes in seasonality could lead to a 70% reduction in the extent of the Amazon rainforest. The primary cause of the dieback of the rainforest is a lengthening of the dry season due to a weakening of the large-scale tropical circulation. Here we examine these changes in the seasonal cycle. Under present day conditions the Amazon climate is characterized by a zonal separation of the dominance of the annual and semi-annual seasonal cycles. This behavior is strongly modified under greenhouse warming conditions, with the annual cycle becoming dominant throughout the Amazon basin, increasing differences between the dry and wet seasons. In particular, there are substantial changes in the annual cycle of temperature due to the increase in the temperature of the warmest month, but the lengthening of the dry season is believed to be particularly important for vegetation-climate feedbacks. Harmonic analysis performed to regional climate model simulations yields results that differ from the global climate model that it is forced from, with the regional model being more sensitive to changes in the seasonal cycle.
Crystal Dislocations
Authors: Armstrong Ronald
Published: January 2016

Crystal dislocations were invisible until the mid-20th century although their presence had been inferred; the atomic and molecular scale dimensions had prevented earlier discovery. Now they are normally known to be just about everywhere, for example, in the softest molecularly-bonded crystals as well as within the hardest covalently-bonded diamonds. The advent of advanced techniques of atomic-scale probing has facilitated modern observations of dislocations in every crystal structure-type, particularly by X-ray diffraction topography and transmission electron microscopy. The present Special Issue provides a flavor of their ubiquitous presences, their characterizations and, especially, their influence on mechanical and electrical properties.
On the Heat Flux Vector and Thermal Conductivity of Slags: A Brief Review
Authors: Massoudi Mehrdad , Kim Jeongho , Wang Ping
Published: January 2016

The viscosity and the thermal conductivity of slag are among two of the most important material properties that need to be studied. In this paper we review the existing theoretical and experimental correlations for the thermal conductivity of slag. However, since, in general, slag behaves as a non-linear fluid, it is the heat flux vector which must be studied. Both explicit and implicit approaches are discussed and suggestions about the form of the heat flux vector and the thermal conductivity and their dependence on shear rate, porosity, deformation, etc. are provided. The discussion of the constitutive modeling of the heat flux vector for slag is from a theoretical perspective.
Effects of Oxygen Content of Fuels on Combustion and Emissions of Diesel Engines
Authors: Song Haiwen , Quinton Kelly , Peng Zhijun , Zhao Hua , Ladommatos Nicos
Published: January 2016

Effects of oxygen content of fuels on combustion characteristics and emissions were investigated on both an optical single cylinder direct injection (DI) diesel engine and a multi-cylinder engine. Three fuels were derived from conventional diesel fuel (Finnish City diesel summer grade) by blending Rapeseed Methyl Ester (RME) or Diglyme and Butyl-Diglyme of different quantities to make their oxygen content 3%, 3% and 9%, respectively. The experimental results with three tested fuels show that the fuel spray development was not affected apparently by the oxygenating. Compared with the base fuel, the ignition delay to pilot injection was shortened by 0%, 11% and 19% for three oxygenated fuels, respectively. The ignition delay to main injection was shortened by 10%, 19% and 38%, respectively. With regard to emissions, the smoke level was reduced by 24% to 90%, depending on fuel properties and engine running conditions. The penalties of increased NOx emissions and fuel consumption were up to 19% and 24%, respectively.
Triticale Bran Alkylresorcinols Enhance Resistance to Oxidative Stress in Mice Fed a High-Fat Diet
Authors: Agil Rania , Patterson Zachary , Mackay Harry , Abizaid Alfonso , Hosseinian Farah
Published: January 2016

Triticale (× Triticosecale Whitm.) is a cereal grain with high levels of alkyresorcinols (AR) concentrated in the bran. These phenolic lipids have been shown to reduce or inhibit triglyceride accumulation and protect against oxidation; however, their biological effects have yet to be evaluated in vivo. The purpose of this study was to determine the effects of ARs extracted from triticale bran (TB) added to a high–fat diet on the development of obesity and oxidative stress. CF-1 mice were fed a standard low-fat (LF) diet, a 60% high-fat diet (HF) and HF diets containing either 0.5% AR extract (HF-AR), 10% TB (HF-TB), or 0.5% vitamin E (HF-VE). Energy intake, weight gain, glucose tolerance, fasting blood glucose (FBG) levels, and body composition were determined. Oxygen radical absorbance capacity (ORAC), superoxide dismutase (SOD) activity, and glutathione (GSH) assays were performed on mice liver and heart tissues. The findings suggest that ARs may serve as a preventative measure against risks of oxidative damage associated with high-fat diets and obesity through their application as functional foods and neutraceuticals. Future studies aim to identify the in vivo mechanisms of action of ARs and the individual homologs involved in their favorable biological effects.
Soil Moisture Estimation in South-Eastern New Mexico Using High Resolution Synthetic Aperture Radar (SAR) Data
Authors: Hossain A.K.M. , Easson Greg
Published: January 2016

Soil moisture monitoring and characterization of the spatial and temporal variability of this hydrologic parameter at scales from small catchments to large river basins continues to receive much attention, reflecting its critical role in subsurface-land surface-atmospheric interactions and its importance to drought analysis, irrigation planning, crop yield forecasting, flood protection, and forest fire prevention. Synthetic Aperture Radar (SAR) data acquired at different spatial resolutions have been successfully used to estimate soil moisture in different semi-arid areas of the world for many years. This research investigated the potential of linear multiple regressions and Artificial Neural Networks (ANN) based models that incorporate different geophysical variables with Radarsat 1 SAR fine imagery and concurrently measured soil moisture measurements to estimate surface soil moisture in Nash Draw, NM. An artificial neural network based model with vegetation density, soil type, and elevation data as input in addition to radar backscatter values was found suitable to estimate surface soil moisture in this area with reasonable accuracy. This model was applied to a time series of SAR data acquired in 2006 to produce soil moisture data covering a normal wet season in the study site.
Relationships between Paraspinal Muscle Activity and Lumbar Inter-Vertebral Range of Motion
Authors: Du Rose Alister , Breen Alan
Published: January 2016

Control of the lumbar spine requires contributions from both the active and passive sub-systems. Identifying interactions between these systems may provide insight into the mechanisms of low back pain. However, as a first step it is important to investigate what is normal. The purpose of this study was to explore the relationships between the lumbar inter-vertebral range of motion and paraspinal muscle activity during weight-bearing flexion in healthy controls using quantitative fluoroscopy (QF) and surface electromyography (sEMG). Contemporaneous lumbar sEMG and QF motion sequences were recorded during controlled active flexion of 60° using electrodes placed over Longissimus thoracis pars thoracis (TES), Longissimus thoracis pars lumborum (LES), and Multifidus (LMU). Normalised root mean square (RMS) sEMG amplitude data were averaged over five epochs, and the change in amplitude between epochs was calculated. The sEMG ratios of LMU/LES LMU/TES and LES/TES were also determined. QF was used to measure the maximum inter-vertebral range of motion from L2-S1, and correlation coefficients were calculated between sEMG amplitude variables and these measurements. Intra- and inter-session sEMG amplitude repeatability was also assessed for all three paraspinal muscles. The sEMG amplitude measurements were highly repeatable, and sEMG amplitude changes correlated significantly with L4-5 and L5-S1 IV-RoMmax (r = −0.47 to 0.59). The sEMG amplitude ratio of LES/TES also correlated with L4-L5 IV-RoMmax (r = −0.53). The relationships found may be important when considering rehabilitation for low back pain.
The Effectiveness of Different Rootstocks for Improving Yield and Growth of Cucumber Cultivated Hydroponically in a Greenhouse
Authors: Farhadi Ali , Aroeii Hossain , Nemati Hossain , Salehi Reza , Giuffrida Francesco
Published: January 2016

The use of grafted vegetable seedlings has been popular in many countries during recent years, and several Cucurbita species and their interspecific hybrids have been tested as rootstocks. Graft-scion incompatibility and lower fruit quality have prevented their commercial use. In this study, the efficacy of grafting the commercial Khassib cucumber hybrid onto various cucurbits, used as rootstocks, was examined in a greenhouse experiment. This experiment was done in a completely randomized design with eight treatments: local landraces of bottle gourd (Ghalyani) and pumpkin (Tanbal) and commercial Cucurbita interspecific hybrids (909, 913, Ferro, 64-19, and Shintoza). Ungrafted plants were used as controls. Results indicated that the highest survival rates were using Ferro hybrid (94%), Cucurbita maxima (Tanbal) (92%), 64-19 and Shintoza (90%). These results appeared to be related to the stem diameter of the rootstocks and, to a lesser extent, to the scion diameter. Cucumber production was not improved by grafting. The highest yield was obtained with Ferro rootstock, but it was no different compared to ungrafted plants. A significantly lower production than the control was observed with Ghalyani (−44%), 913 (−73%) and 64-19 (−35%) rootstocks. Total soluble solids (TSS) of fruit produced by ungrafted plants was significantly higher than the other treatments. The highest length/diameter ratio was obtained with 909 and Ghalyani rootstocks, whereas more stocky fruit were produced by plants grafted onto Tanbal and 64-19 rootstocks.
Streamflow Trends and Responses to Climate Variability and Land Cover Change in South Dakota
Authors: Kibria Karishma , Ahiablame Laurent , Hay Christopher , Djira Gemechis
Published: January 2016

Trends in high, moderate, and low streamflow conditions from United States Geological Survey (USGS) gauging stations were evaluated for a period of 1951–2013 for 18 selected watersheds in South Dakota (SD) using a modified Mann-Kendall test. Rainfall trends from 21 rainfall observation stations located within 20-km of the streamflow gauging stations were also evaluated for the same study period. The concept of elasticity was used to examine sensitivity of streamflow to variation in rainfall and land cover (i.e., grassland) in the study watersheds. Results indicated significant increasing trends in seven of the studied streams (of which five are in the east and two are located in the west), nine with slight increasing trends, and two with decreasing trends for annual streamflow. About half of the streams exhibited significant increasing trends in low and moderate flow conditions compared to high flow conditions. Ten rainfall stations showed slight increasing trends and seven showed decreasing trends for annual rainfall. Streamflow elasticity analysis revealed that streamflow was highly influenced by rainfall across the state (five of eastern streams and seven of western streams). Based on this analysis, a 10% increase in annual rainfall would result in 11%–30% increase in annual streamflow in more than 60% of SD streams. While streamflow appears to be more sensitive to rainfall across the state, high sensitivity of streamflow to rapid decrease in grassland area was detected in two western watersheds. This study provides valuable insight into of the relationship between streamflow, climate, and grassland cover in SD and would support further research and stakeholder decision making about water resources.
Advanced Wastewater Treatment Engineering—Investigating Membrane Fouling in both Rotational and Static Membrane Bioreactor Systems Using Empirical Modelling
Authors: Paul Parneet , Jones Franck
Published: January 2016

Advanced wastewater treatment using membranes are popular environmental system processes since they allow reuse and recycling. However, fouling is a key limiting factor and so proprietary systems such as Avanti’s RPU-185 Flexidisks membrane bioreactor (MBR) use novel rotating membranes to assist in ameliorating it. In earlier research, this rotating process was studied by creating a simulation model based on first principles and traditional fouling mechanisms. In order to directly compare the potential benefits of this rotational system, this follow-up study was carried out using Avanti’s newly developed static (non-rotating) Flexidisks MBR system. The results from operating the static pilot unit were simulated and modelled using the rotational fouling model developed earlier however with rotational switching functions turned off and rotational parameters set to a static mode. The study concluded that a rotating MBR system could increase flux throughput when compared against a similar static system. It is thought that although the slowly rotating spindle induces a weak crossflow shear, it is still able to even out cake build up across the membrane surface, thus reducing the likelihood of localised critical flux being exceeded at the micro level and lessening the potential of rapid trans-membrane pressure increases at the macro level.
Experimental Study on Ultrafine Particle Removal Performance of Portable Air Cleaners with Different Filters in an Office Room
Authors: Ma Huan , Shen Henggen , Shui Tiantian , Li Qing , Zhou Liuke
Published: January 2016

Size- and time-dependent aerodynamic behaviors of indoor particles, including PM1.0, were evaluated in a school office in order to test the performance of air-cleaning devices using different filters. In-situ real-time measurements were taken using an optical particle counter. The filtration characteristics of filter media, including single-pass efficiency, volume and effectiveness, were evaluated and analyzed. The electret filter (EE) medium shows better initial removal efficiency than the high efficiency (HE) medium in the 0.3–3.5 μm particle size range, while under the same face velocity, the filtration resistance of the HE medium is several times higher than that of the EE medium. During service life testing, the efficiency of the EE medium decreased to 60% with a total purifying air flow of 25 × 104 m3/m2. The resistance curve rose slightly before the efficiency reached the bottom, and then increased almost exponentially. The single-pass efficiency of portable air cleaner (PAC) with the pre-filter (PR) or the active carbon granule filter (CF) was relatively poor. While PAC with the pre-filter and the high efficiency filter (PR&HE) showed maximum single-pass efficiency for PM1.0 (88.6%), PAC with the HE was the most effective at removing PM1.0. The enhancement of PR with HE and electret filters augmented the single-pass efficiency, but lessened the airflow rate and effectiveness. Combined with PR, the decay constant of large-sized particles could be greater than for PACs without PR. Without regard to the lifetime, the electret filters performed better with respect to resource saving and purification improvement. A most penetrating particle size range (MPPS: 0.4–0.65 μm) exists in both HE and electret filters; the MPPS tends to become larger after HE and electret filters are combined with PR. These results serve to provide a better understanding of the indoor particle removal performance of PACs when combined with different kinds of filters in school office buildings.
Beyond Smoking Prevalence: Exploring the Variability of Associations between Neighborhood Exposures across Two Nested Spatial Units and Two-Year Smoking Trajectory among Young Adults
Authors: Ghenadenik Adrian , Frohlich Katherine , Gauvin Lise
Published: January 2016

Young adults have the highest prevalence of smoking amongst all age groups. Significant uptake occurs after high school age. Although neighborhood exposures have been found to be associated with smoking behavior, research on neighborhood exposures and the smoking trajectories among young adults, and on the role of geographic scale in shaping findings, is scarce. We examined associations between neighborhood exposures across two nested, increasingly large spatial units and smoking trajectory over two years among young adults living in Montreal, Canada. A sample of 2093 participants aged 18–25 years from the Interdisciplinary Study of Inequalities in Smoking (ISIS) was surveyed. The dependent variable was self-reported smoking trajectory over the course of two years. Residential addresses, data on presence of tobacco retail outlets, and the presence of smoking accommodation facilities were coded and linked to spatial units. Three-level multinomial models were used to examine associations. The likelihood of being a smoker for 2+ years was significantly greater among those living in larger spatial unit neighborhoods that had a greater presence of smoking accommodation. This association was not statistically significant at the smaller spatial units. Our findings highlight the importance of studying young adults’ smoking trajectories in addition to static smoking outcomes, and point to the relevance of considering spatial scale in studies of neighborhoods and smoking.
Response to Polosa et al. Comments on Scheffler et al. Cytotoxic Evaluation of E-Liquid Aerosol Using Different Lung Derived Cell Models. Int. J. Environ. Res. Public Health, 2015, 12, 12466-12474
Authors: Scheffler Stefanie , Dieken Hauke , Krischenowski Olaf , Aufderheide Michaela
Published: January 2016

Referring to the comments of Polosa and colleagues [1] on our latest in vitro e-liquid aerosol testing publication, we would like to give our statements about some points. [...]
Comparative Transcriptome Profile of the Cytoplasmic Male Sterile and Fertile Floral Buds of Radish (Raphanus sativus L.)
Authors: Mei Shiyong , Liu Touming , Wang Zhiwei
Published: January 2016

Radish cytoplasmic male sterility (CMS) has been widely used for breeding in Raphanus and Brassica genera. However, the detailed regulation network of the male sterility remains to be determined. Our previous work has shown that the abnormalities in a CMS radish appeared shortly after the tetrad stage when microspores were malformed and the tapetal cells grew abnormally large. In this work, histological analysis shows that anthers are at the tetrad stage when the radish buds are about 1.5 mm in length. Furthermore, a high throughput RNA sequencing technology was employed to characterize the transcriptome of radish buds with length about 1.5 mm from two CMS lines possessing the CMS-inducing orf138 gene and corresponding near-isogenic maintainer lines. A total of 67,140 unigenes were functionally annotated. Functional terms for these genes are significantly enriched in 55 Gene Ontology (GO) groups and 323 Kyoto Encyclopedia of Genes and Genomes (KEGG) pathways. The transcriptome detected transcripts for 72 out of a total of 79 protein genes encoded in the chloroplast genome from radish. In contrast, the radish mitochondrial genome contains 34 protein genes, but only 16 protein transcripts were detected from the transcriptome. The transcriptome comparison between CMS and near-isogenic maintainer lines revealed 539 differentially expressed genes (DEGs), indicating that the false positive rate for comparative transcriptome profiling was clearly decreased using two groups of CMS/maintainer lines with different nuclear background. The level of 127 transcripts was increased and 412 transcripts were decreased in the CMS lines. No change in levels of transcripts except CMS-inducing orf138 was identified from the mitochondrial and chloroplast genomes. Some DEGs which would be associated with the CMS, encoding MYB and bHLH transcription factors, pentatricopeptide repeat (PPR) proteins, heat shock transcription factors (HSFs) and heat shock proteins (HSPs), are discussed. The transcriptome dataset and comparative analysis will provide an important resource for further understanding anther development, the CMS mechanism and to improve molecular breeding in radish.
Anion Channel Inhibitor NPPB-Inhibited Fluoride Accumulation in Tea Plant (Camellia sinensis) Is Related to the Regulation of Ca2+, CaM and Depolarization of Plasma Membrane Potential
Authors: Zhang Xian-Chen , Gao Hong-Jian , Yang Tian-Yuan , Wu Hong-Hong , Wang Yu-Mei , Zhang Zheng-Zhu , Wan Xiao-Chun
Published: January 2016

Tea plant is known to be a hyper-accumulator of fluoride (F). Over-intake of F has been shown to have adverse effects on human health, e.g., dental fluorosis. Thus, understanding the mechanisms fluoride accumulation and developing potential approaches to decrease F uptake in tea plants might be beneficial for human health. In the present study, we found that pretreatment with the anion channel inhibitor NPPB reduced F accumulation in tea plants. Simultaneously, we observed that NPPB triggered Ca2+ efflux from mature zone of tea root and significantly increased relative CaM in tea roots. Besides, pretreatment with the Ca2+ chelator (EGTA) and CaM antagonists (CPZ and TFP) suppressed NPPB-elevated cytosolic Ca2+ fluorescence intensity and CaM concentration in tea roots, respectively. Interestingly, NPPB-inhibited F accumulation was found to be significantly alleviated in tea plants pretreated with either Ca2+ chelator (EGTA) or CaM antagonists (CPZ and TFP). In addition, NPPB significantly depolarized membrane potential transiently and we argue that the net Ca2+ and H+ efflux across the plasma membrane contributed to the restoration of membrane potential. Overall, our results suggest that regulation of Ca2+-CaM and plasma membrane potential depolarization are involved in NPPB-inhibited F accumulation in tea plants.
Effect of Acetyl Group on Mechanical Properties of Chitin/Chitosan Nanocrystal: A Molecular Dynamics Study
Authors: Cui Junhe , Yu Zechuan , Lau Denvid
Published: January 2016

Chitin fiber is the load-bearing component in natural chitin-based materials. In these materials, chitin is always partially deacetylated to different levels, leading to diverse material properties. In order to understand how the acetyl group enhances the fracture resistance capability of chitin fiber, we constructed atomistic models of chitin with varied acetylation degree and analyzed the hydrogen bonding pattern, fracture, and stress-strain behavior of these models. We notice that the acetyl group can contribute to the formation of hydrogen bonds that can stabilize the crystalline structure. In addition, it is found that the specimen with a higher acetylation degree presents a greater resistance against fracture. This study describes the role of the functional group, acetyl groups, in crystalline chitin. Such information could provide preliminary understanding of nanomaterials when similar functional groups are encountered.
Porcine Adipose-Derived Mesenchymal Stem Cells Retain Their Stem Cell Characteristics and Cell Activities While Enhancing the Expression of Liver-Specific Genes after Acute Liver Failure
Authors: Hu Chenxia , Zhou Ning , Li Jianzhou , Shi Ding , Cao Hongcui , Li Jun , Li Lanjuan
Published: January 2016

Acute liver failure (ALF) is a kind of complicated syndrome. Furthermore, adipose-derived mesenchymal stem cells (ADMSCs) can serve as a useful cell resource for autotransplantation due to their abundance and micro-invasive accessability. However, it is unknown how ALF will influence the characteristics of ADMSCs and whether ADMSCs from patients suffering from end-stage liver diseases are potential candidates for autotransplantation. This study was designed to compare various properties of ALF-derived ADMSCs with normal ADMSCs in pig models, with regard to their cellular morphology, cell proliferative ability, cell apoptosis, expression of surface antigens, mitochondrial and lysosomal activities, multilineage potency, and expression of liver-specific genes. Our results showed that ALF does not influence the stem cell characteristics and cell activities of ADMSCs. Intriguingly, the expression levels of several liver-specific genes in ALF-derived ADMSCs are higher than in normal ADMSCs. In conclusion, our findings indicate that the stem cell characteristics and cell activities of ADMSCs were not altered by ALF and these cells can serve as a new source for regenerative medicine.
Cardiac Extracellular Vesicles in Normal and Infarcted Heart
Authors: Chistiakov Dimitry , Orekhov Alexander , Bobryshev Yuri
Published: January 2016

Heart is a complex assembly of many cell types constituting myocardium, endocardium and epicardium that intensively communicate to each other in order to maintain the proper cardiac function. There are many types of intercellular intracardiac signals, with a prominent role of extracellular vesicles (EVs), such as exosomes and microvesicles, for long-distant delivering of complex messages. Cardiomyocytes release EVs, whose content could significantly vary depending on the stimulus. In stress, such as hypoxia, inflammation or injury, cardiomyocytes increase secretion of EVs. In hypoxic conditions, cardiac EVs are enriched with angiogenic and prosurvival factors. In acute myocardial infarction (AMI), damaged cardiac muscle cells produce EVs with increased content of angiogenic, anti-apoptotic, mitogenic and growth factors in order to induce repair and healing of the infarcted myocardium. Exosomal microRNAs play a central role in cardiac regeneration. In AMI, circulating cardiac EVs abundantly contain cardiac-specific miRNAs that serve as indicators of cardiac damage and have a big diagnostic potential as AMI biomarkers. Cardioprotective and regenerative properties of exosomes derived from cardiac and non-cardiac stem/progenitor cells are very helpful to be used in cell-free cardiotherapy and regeneration of post-infarct myocardium.
Ischemia, Immunosuppression and Infection—Tackling the Predicaments of Post-Stroke Complications
Authors: Shim Raymond , Wong Connie
Published: January 2016

The incidence of stroke has risen over the past decade and will continue to be one of the leading causes of death and disability worldwide. While a large portion of immediate death following stroke is due to cerebral infarction and neurological complications, the most common medical complication in stroke patients is infection. In fact, infections, such as pneumonia and urinary tract infections, greatly worsen the clinical outcome of stroke patients. Recent evidence suggests that the disrupted interplay between the central nervous system and immune system contributes to the development of infection after stroke. The suppression of systemic immunity by the nervous system is thought to protect the brain from further inflammatory insult, yet this comes at the cost of increased susceptibility to infection after stroke. To improve patient outcome, there have been attempts to lessen the stroke-associated bacterial burden through the prophylactic use of broad-spectrum antibiotics. However, preventative antibiotic treatments have been unsuccessful, and therefore have been discouraged. Additionally, with the ever-rising obstacle of antibiotic-resistance, future therapeutic options to reverse immune impairment after stroke by augmentation of host immunity may be a viable alternative option. However, cautionary steps are required to ensure that collateral ischemic damage caused by cerebral inflammation remains minimal.
Earthworm Lumbricus rubellus MT-2: Metal Binding and Protein Folding of a True Cadmium-MT
Authors: Kowald Gregory , Stürzenbaum Stephen , Blindauer Claudia
Published: January 2016

Earthworms express, as most animals, metallothioneins (MTs)—small, cysteine-rich proteins that bind d10 metal ions (Zn(II), Cd(II), or Cu(I)) in clusters. Three MT homologues are known for Lumbricus rubellus, the common red earthworm, one of which, wMT-2, is strongly induced by exposure of worms to cadmium. This study concerns composition, metal binding affinity and metal-dependent protein folding of wMT-2 expressed recombinantly and purified in the presence of Cd(II) and Zn(II). Crucially, whilst a single Cd7wMT-2 species was isolated from wMT-2-expressing E. coli cultures supplemented with Cd(II), expressions in the presence of Zn(II) yielded mixtures. The average affinities of wMT-2 determined for either Cd(II) or Zn(II) are both within normal ranges for MTs; hence, differential behaviour cannot be explained on the basis of overall affinity. Therefore, the protein folding properties of Cd- and Zn-wMT-2 were compared by 1H NMR spectroscopy. This comparison revealed that the protein fold is better defined in the presence of cadmium than in the presence of zinc. These differences in folding and dynamics may be at the root of the differential behaviour of the cadmium- and zinc-bound protein in vitro, and may ultimately also help in distinguishing zinc and cadmium in the earthworm in vivo.
The Metals in the Biological Periodic System of the Elements: Concepts and Conjectures
Authors: Maret Wolfgang
Published: January 2016

A significant number of chemical elements are either essential for life with known functions, or present in organisms with poorly defined functional outcomes. We do not know all the essential elements with certainty and we know even less about the functions of apparently non-essential elements. In this article, I discuss a basis for a biological periodic system of the elements and that biochemistry should include the elements that are traditionally part of inorganic chemistry and not only those that are in the purview of organic chemistry. A biological periodic system of the elements needs to specify what “essential” means and to which biological species it refers. It represents a snapshot of our present knowledge and is expected to undergo further modifications in the future. An integrated approach of biometal sciences called metallomics is required to understand the interactions of metal ions, the biological functions that their chemical structures acquire in the biological system, and how their usage is fine-tuned in biological species and in populations of species with genetic variations (the variome).
Aberrant DNA Methylation of rDNA and PRIMA1 in Borderline Personality Disorder
Authors: Teschler Stefanie , Gotthardt Julia , Dammann Gerhard , Dammann Reinhard
Published: January 2016

Borderline personality disorder (BPD) is a serious psychic disease with a high risk for suicide. DNA methylation is a hallmark for aberrant epigenetic regulation and could be involved in the etiology of BPD. Previously, it has been reported that increased DNA methylation of neuropsychiatric genes is found in the blood of patients with BPD compared to healthy controls. Here, we analyzed DNA methylation patterns of the ribosomal RNA gene (rDNA promoter region and 5′-external transcribed spacer/5′ETS) and the promoter of the proline rich membrane anchor 1 gene (PRIMA1) in peripheral blood samples of 24 female patients (mean age (33 ± 11) years) diagnosed with DSM-IV BPD and in 11 female controls (mean age (32 ± 7) years). A significant aberrant methylation of rDNA and PRIMA1 was revealed for BPD patients using pyrosequencing. For the promoter of PRIMA1, the average methylation of six CpG sites was 1.6-fold higher in BPD patients compared to controls. In contrast, the methylation levels of the rDNA promoter region and the 5′ETS were significantly lower (0.9-fold) in patients with BPD compared to controls. Thus, for nine CpGs located in the rDNA promoter region and for four CpGs at the 5′ETS decreased methylation was found in peripheral blood of patients compared to controls. Our results suggest that aberrant methylation of rDNA and PRIMA1 is associated with the pathogenesis of BPD.
A Comparison of Simple Methods to Incorporate Material Temperature Dependency in the Green’s Function Method for Estimating Transient Thermal Stresses in Thick-Walled Power Plant Components
Authors: Rouse James , Hyde Christopher
Published: January 2016

The threat of thermal fatigue is an increasing concern for thermal power plant operators due to the increasing tendency to adopt “two-shifting” operating procedures. Thermal plants are likely to remain part of the energy portfolio for the foreseeable future and are under societal pressures to generate in a highly flexible and efficient manner. The Green’s function method offers a flexible approach to determine reference elastic solutions for transient thermal stress problems. In order to simplify integration, it is often assumed that Green’s functions (derived from finite element unit temperature step solutions) are temperature independent (this is not the case due to the temperature dependency of material parameters). The present work offers a simple method to approximate a material’s temperature dependency using multiple reference unit solutions and an interpolation procedure. Thermal stress histories are predicted and compared for realistic temperature cycles using distinct techniques. The proposed interpolation method generally performs as well as (if not better) than the optimum single Green’s function or the previously-suggested weighting function technique (particularly for large temperature increments). Coefficients of determination are typically above 0 . 96 , and peak stress differences between true and predicted datasets are always less than 10 MPa.
Development of a Hopkinson Bar Apparatus for Testing Soft Materials: Application to a Closed-Cell Aluminum Foam
Authors: Peroni Marco , Solomos George , Babcsan Norbert
Published: January 2016

An increasing interest in lightweight metallic foams for automotive, aerospace, and other applications has been observed in recent years. This is mainly due to the weight reduction that can be achieved using foams and for their mechanical energy absorption and acoustic damping capabilities. An accurate knowledge of the mechanical behavior of these materials, especially under dynamic loadings, is thus necessary. Unfortunately, metal foams and in general “soft” materials exhibit a series of peculiarities that make difficult the adoption of standard testing techniques for their high strain-rate characterization. This paper presents an innovative apparatus, where high strain-rate tests of metal foams or other soft materials can be performed by exploiting the operating principle of the Hopkinson bar methods. Using the pre-stress method to generate directly a long compression pulse (compared with traditional SHPB), a displacement of about 20 mm can be applied to the specimen with a single propagating wave, suitable for evaluating the whole stress-strain curve of medium-sized cell foams (pores of about 1–2 mm). The potential of this testing rig is shown in the characterization of a closed-cell aluminum foam, where all the above features are amply demonstrated.
Triggered Release from Thermoresponsive Polymersomes with Superparamagnetic Membranes
Authors: Bixner Oliver , Kurzhals Steffen , Virk Mudassar , Reimhult Erik
Published: January 2016

Magnetic polymersomes were prepared by self-assembly of the amphiphilic block copolymer poly(isoprene-b-N-isopropylacrylamide) with monodisperse hydrophobic superparamagnetic iron oxide nanoparticles (SPION). The specifically designed thermoresponsive block copolymer allowed for efficient incorporation of the hydrophobic nanoparticles in the membrane core and encapsulation of the water soluble dye calcein in the lumen of the vesicles. Magnetic heating of the embedded SPIONs led to increased bilayer permeability through dehydration of the thermoresponsive PNIPAM block. The entrapped calcein could therefore be released in controlled doses solely through exposure to pulses of an alternating magnetic field. This hybrid SPION-polymersome system demonstrates a possible direction for release applications that merges rational polymersome design with addressed external magnetic field-triggered release through embedded nanomaterials.
Investigation of Elastic Deformation Mechanism in As-Cast and Annealed Eutectic and Hypoeutectic Zr–Cu–Al Metallic Glasses by Multiscale Strain Analysis
Authors: Suzuki Hiroshi , Yamada Rui , Tsubaki Shinki , Imafuku Muneyuki , Sato Shigeo , Watanuki Tetsu , Machida Akihiko , Saida Junji
Published: January 2016

Elastic deformation behaviors of as-cast and annealed eutectic and hypoeutectic Zr–Cu–Al bulk metallic glasses (BMG) were investigated on a basis of different strain-scales, determined by X-ray scattering and the strain gauge. The microscopic strains determined by Direct-space method and Reciprocal-space method were compared with the macroscopic strain measured by the strain gauge, and the difference in the deformation mechanism between eutectic and hypoeutectic Zr–Cu–Al BMGs was investigated by their correlation. The eutectic Zr50Cu40Al10 BMG obtains more homogeneous microstructure by free-volume annihilation after annealing, improving a resistance to deformation but degrading ductility because of a decrease in the volume fraction of weakly-bonded regions with relatively high mobility. On the other hand, the as-cast hypoeutectic Zr60Cu30Al10 BMG originally has homogeneous microstructure but loses its structural and elastic homogeneities because of nanocluster formation after annealing. Such structural changes by annealing might develop unique mechanical properties showing no degradations of ductility and toughness for the structural-relaxed hypoeutectic Zr60Cu30Al10 BMGs.
Low Substrate Loading Limits Methanogenesis and Leads to High Coulombic Efficiency in Bioelectrochemical Systems
Authors: Sleutels Tom , Molenaar Sam , Heijne Annemiek , Buisman Cees
Published: January 2016

A crucial aspect for the application of bioelectrochemical systems (BESs) as a wastewater treatment technology is the efficient oxidation of complex substrates by the bioanode, which is reflected in high Coulombic efficiency (CE). To achieve high CE, it is essential to give a competitive advantage to electrogens over methanogens. Factors that affect CE in bioanodes are, amongst others, the type of wastewater, anode potential, substrate concentration and pH. In this paper, we focus on acetate as a substrate and analyze the competition between methanogens and electrogens from a thermodynamic and kinetic point of view. We reviewed experimental data from earlier studies and propose that low substrate loading in combination with a sufficiently high anode overpotential plays a key-role in achieving high CE. Low substrate loading is a proven strategy against methanogenic activity in large-scale reactors for sulfate reduction. The combination of low substrate loading with sufficiently high overpotential is essential because it results in favorable growth kinetics of electrogens compared to methanogens. To achieve high current density in combination with low substrate concentrations, it is essential to have a high specific anode surface area. New reactor designs with these features are essential for BESs to be successful in wastewater treatment in the future.
Aqueous Dispersions of Silica Stabilized with Oleic Acid Obtained by Green Chemistry
Authors: Nistor Cristina , Ianchis Raluca , Ghiurea Marius , Nicolae Cristian-Andi , Spataru Catalin-Ilie , Culita Daniela , Pandele Cusu Jeanina , Fruth Victor , Oancea Florin , Donescu Dan
Published: January 2016

The present study describes for the first time the synthesis of silica nanoparticles starting from sodium silicate and oleic acid (OLA). The interactions between OLA and sodium silicate require an optimal OLA/OLANa molar ratio able to generate vesicles that can stabilize silica particles obtained by the sol-gel process of sodium silicate. The optimal molar ratio of OLA/OLANa can be ensured by a proper selection of OLA and respectively of sodium silicate concentration. The titration of sodium silicate with OLA revealed a stabilization phenomenon of silica/OLA vesicles and the dependence between their average size and reagent’s molar ratio. Dynamic light scattering (DLS) and scanning electron microscopy (SEM) measurements emphasized the successful synthesis of silica nanoparticles starting from renewable materials, in mild condition of green chemistry. By grafting octadecyltrimethoxysilane on the initial silica particles, an increased interaction between silica particles and the OLA/OLANa complex was achieved. This interaction between the oleyl and octadecyl chains resulted in the formation of stable gel-like aqueous systems. Subsequently, olive oil and an oleophylic red dye were solubilized in these stable aqueous systems. This great dispersing capacity of oleosoluble compounds opens new perspectives for future green chemistry applications. After the removal of water and of the organic chains by thermal treatment, mesoporous silica was obtained.
The Influence of Carbonaceous Matrices and Electrocatalytic MnO2 Nanopowders on Lithium-Air Battery Performances
Authors: Minguzzi Alessandro , Longoni Gianluca , Cappelletti Giuseppe , Pargoletti Eleonora , Di Bari Chiara , Locatelli Cristina , Marelli Marcello , Rondinini Sandra , Vertova Alberto
Published: January 2016

Here, we report new gas diffusion electrodes (GDEs) prepared by mixing two different pore size carbonaceous matrices and pure and silver-doped manganese dioxide nanopowders, used as electrode supports and electrocatalytic materials, respectively. MnO2 nanoparticles are finely characterized in terms of structural (X-ray powder diffraction (XRPD), energy dispersive X-ray (EDX)), morphological (SEM, high-angle annular dark field (HAADF)-scanning transmission electron microscopy (STEM)/TEM), surface (Brunauer Emmet Teller (BET)-Barrett Joyner Halenda (BJH) method) and electrochemical properties. Two mesoporous carbons, showing diverse surface areas and pore volume distributions, have been employed. The GDE performances are evaluated by chronopotentiometric measurements to highlight the effects induced by the adopted materials. The best combination, hollow core mesoporous shell carbon (HCMSC) with 1.0% Ag-doped hydrothermal MnO2 (M_hydro_1.0%Ag) allows reaching very high specific capacity close to 1400 mAh·g−1. Considerably high charge retention through cycles is also observed, due to the presence of silver as a dopant for the electrocatalytic MnO2 nanoparticles.
Brighter Fluorescent Derivatives of UTI89 Utilizing a Monomeric vGFP
Authors: Eshaghi Majid , Mehershahi Kurosh , Chen Swaine
Published: January 2016

Fluorescent proteins, especially green fluorescent protein (GFP), have been instrumental in understanding urinary tract infection pathogenesis by uropathogenic Escherichia coli (UPEC). We have used a recently developed GFP variant, vsfGFP-9, to create new plasmid- and chromosome-based GFP derivatives of the UPEC strain UTI89. The vsfGFP-9 strains are nearly 10× brighter with no in vitro growth or in vivo virulence defects compared to previously reported GFP-expressing UTI89 strains. The chromosomal vsfGFP-9 strain is equivalent to the wild type UTI89 during in vivo UTI, while both plasmid GFP constructs have an equivalent virulence defect compared to non-plasmid carrying UTI89. These new vsfGFP-9 expressing strains should be useful for further studies of the pathogenesis of UTI89, and similar strategies can be used to create improved fluorescent derivatives of other UPEC strains.
Asymptomatic Bacteriuria in Clinical Urological Practice: Preoperative Control of Bacteriuria and Management of Recurrent UTI
Authors: Cai Tommaso , Mazzoli Sandra , Lanzafame Paolo , Caciagli Patrizio , Malossini Gianni , Nesi Gabriella , Wagenlehner Florian , Köves Bela , Pickard Robert , Grabe Magnus , Bjerklund Johansen Truls , Bartoletti Riccardo
Published: January 2016

Asymptomatic bacteriuria (ABU) is a common clinical condition that often leads to unnecessary antimicrobial use. The reduction of antibiotic overuse for ABU is consequently an important issue for antimicrobial stewardship and to reduce the emergence of multidrug resistant strains. There are two issues in everyday urological practice that require special attention: the role of ABU in pre-operative prophylaxis and in women affected by recurrent urinary tract infections (rUTIs). Nowadays, this is the time to think over our practice and change our way of thinking. Here, we aimed to summarize the current literature knowledge in terms of ABU management in patients undergoing urological surgery and in patients with rUTIs. In the last years, the approach to patient with ABU has changed totally. Prior to all surgical procedures that do not enter the urinary tract, ABU is generally not considered as a risk factor, and screening and treatment are not considered necessary. On the other hand, in the case of all procedures entering the urinary tract, ABU should be treated in line with the results of a urine culture obtained before the procedure. In patients affected by rUTIs, ABU can even have a protective role in preventing symptomatic recurrence, particularly when Enterococcus faecalis (E. faecalis) has been isolated.