bluuebunny/crossref_metadata_2025 huggingface dataset:
Image Analysis Reveals Microstructural and Volumetric Differences in Glioblastoma Patients with and without Preoperative Seizures
Authors: Bette Stefanie , Barz Melanie , Nham Huong , Huber Thomas , Berndt Maria , Sales Arthur , Schmidt-Graf Friederike , Meyer Hanno , Ryang Yu-Mi , Meyer Bernhard , Zimmer Claus , Kirschke Jan , Wiestler Benedikt , Gempt Jens
Published: April 2020

Purpose: Seizures related to tumor growth are common in glioma patients, especially in low-grade glioma patients this is often the first tumor manifestation. We hypothesize that there are associations between preoperative seizures and morphologic features (e.g., tumor size, location) and histogram features in patients with glioblastoma (GB). Methods: Retrospectively, 160 consecutive patients with initial diagnosis and surgery of GB (WHO IV) and preoperative MRI were analyzed. Preoperative MRI sequences were co-registered (T2-FLAIR, T1-contrast, DTI) and tumors were segmented by a neuroradiologist using the software ITK-snap blinded to the clinical data. Tumor volume (FLAIR, T1-contrast) and histogram analyses of ADC- and FA-maps were recorded in the contrast enhancing tumor part (CET) and the non-enhancing peritumoral edema (FLAIR). Location was determined after co-registration of the data with an atlas. Permutation-based multiple-testing adjusted t statistics were calculated to compare imaging variables between patients with and without seizures. Results: Patients with seizures showed significantly smaller tumors (CET, adj. p = 0.029) than patients without preoperative seizures. Less seizures were observed in patients with tumor location in the right cingulate gyrus (adj. p = 0.048) and in the right caudate nucleus (adj. p = 0.009). Significant differences of histogram analyses of FA in the contrast enhancing tumor part were observed between patients with and without seizures considering also tumor location and size. Conclusion: Preoperative seizures in GB patients are associated with lower preoperative tumor volume. The different histogram analyses suggest that there might be microstructural differences in the contrast enhancing tumor part of patients with seizures measured by fractional anisotropy. Higher variance of GB presenting without seizures might indicate a more aggressive growth of these tumors.
Pickled Vegetable and Salted Fish Intake and the Risk of Gastric Cancer: Two Prospective Cohort Studies and a Meta-Analysis
Authors: Yoo Jin Young , Cho Hyun Jeong , Moon Sungji , Choi Jeoungbin , Lee Sangjun , Ahn Choonghyun , Yoo Keun-Young , Kim Inah , Ko Kwang-Pil , Lee Jung Eun , Park Sue K.
Published: April 2020

An increased risk of gastric cancer for pickled vegetable and salted fish intake has been suggested, yet the lack of a dose-response association warrants a quantitative analysis. We conducted a meta-analysis, combining results from our analysis of two large Korean cohort studies and those from previous prospective cohort studies. We investigated the association of pickled vegetable and salted fish intake with gastric cancer in the Korean Genome Epidemiology Study and the Korean Multi-center Cancer Cohort Study using Cox proportional hazard models. We then searched for observational studies published until November 2019 and conducted both dose-response and categorical meta-analyses. The pooled relative risk (RR) of gastric cancer incidence was 1.15 (95% Confidence Interval (CI), 1.07–1.23) for 40 g/day increment in pickled vegetable intake in a dose-response manner (P for nonlinearity = 0.11). As for salted fish intake, the pooled risk of gastric cancer incidence was 1.17 (95% CI, 0.99–1.38) times higher, comparing the highest to the lowest intake. Our findings supported the evidence that high intake of pickled vegetable and salted fish is associated with elevated risk of gastric cancer incidence.
Healthcare Costs of Metastatic Cutaneous Melanoma in the Era of Immunotherapeutic and Targeted Drugs
Authors: Leeneman Brenda , Uyl-de Groot Carin A. , Aarts Maureen J. B. , van Akkooi Alexander C. J. , van den Berkmortel Franchette W. P. J. , van den Eertwegh Alfons J. M. , de Groot Jan Willem B. , Herbschleb Karin H. , van der Hoeven Jacobus J. M. , Hospers Geke A. P. , Kapiteijn Ellen , Piersma Djura , van Rijn Rozemarijn S. , Suijkerbuijk Karijn P. M. , ten Tije Albert J. , van der Veldt Astrid A. M. , Vreugdenhil Gerard , Wouters Michel W. J. M. , Haanen John B. A. G. , Franken Margreet G.
Published: April 2020

Immunotherapeutic and targeted drugs improved survival of patients with metastatic melanoma. There is, however, a lack of evidence regarding their healthcare costs in clinical practice. The aim of our study was to provide insight into real-world healthcare costs of patients with metastatic cutaneous melanoma. Data were obtained from the Dutch Melanoma Treatment Registry for patients who were registered between July 2012 and December 2018. Mean total/monthly costs per patient were reported for all patients, patients who did not receive systemic therapy, and patients who received systemic therapy. Furthermore, mean episode/monthly costs per line of therapy and drug were reported for patients who received systemic therapy. Mean total/monthly costs were € 89,240/€ 6809: € 7988/€ 2483 for patients who did not receive systemic therapy (n = 784) and € 105,078/€ 7652 for patients who received systemic therapy (n = 4022). Mean episode/monthly costs were the highest for nivolumab plus ipilimumab (€ 79,675/€ 16,976), ipilimumab monotherapy (€ 79,110/€ 17,252), and dabrafenib plus trametinib (€ 77,053/€ 12,015). Dacarbazine yielded the lowest mean episode/monthly costs (€ 6564/€ 2027). Our study showed that immunotherapeutic and targeted drugs had a large impact on real-world healthcare costs. As new drugs continue entering the treatment landscape for (metastatic) melanoma, it remains crucial to monitor whether the benefits of these drugs outweigh their costs.
Dysmetabolic Circulating Tumor Cells Are Prognostic in Metastatic Breast Cancer
Authors: Brisotto Giulia , Biscontin Eva , Rossi Elisabetta , Bulfoni Michela , Piruska Aigars , Spazzapan Simon , Poggiana Cristina , Vidotto Riccardo , Steffan Agostino , Colombatti Alfonso , Huck Wilhelm T. S. , Cesselli Daniela , Zamarchi Rita , Turetta Matteo , Del Ben Fabio
Published: April 2020

Circulating tumor cells (CTCs) belong to a heterogeneous pool of rare cells, and a unequivocal phenotypic definition of CTC is lacking. Here, we present a definition of metabolically-altered CTC (MBA-CTCs) as CD45-negative cells with an increased extracellular acidification rate, detected with a single-cell droplet microfluidic technique. We tested the prognostic value of MBA-CTCs in 31 metastatic breast cancer patients before starting a new systemic therapy (T0) and 3–4 weeks after (T1), comparing results with a parallel FDA-approved CellSearch (CS) approach. An increased level of MBA-CTCs was associated with: i) a shorter median PFS pre-therapy (123 days vs. 306; p < 0.0001) and during therapy (139 vs. 266 days; p = 0.0009); ii) a worse OS pre-therapy (p = 0.0003, 82% survival vs. 20%) and during therapy (p = 0.0301, 67% survival vs. 38%); iii) good agreement with therapy response (kappa = 0.685). The trend of MBA-CTCs over time (combining data at T0 and T1) added information with respect to separate evaluation of T0 and T1. The combined results of the two assays (MBA and CS) increased stratification accuracy, while correlation between MBA and CS was not significant, suggesting that the two assays are detecting different CTC subsets. In conclusion, this study suggests that MBA allows detection of both EpCAM-negative and EpCAM-positive, viable and label-free CTCs, which provide clinical information apparently equivalent and complementary to CS. A further validation of proposed method and cut-offs is needed in a larger, separate study.
Insights into Genetic Susceptibility to Melanoma by Gene Panel Testing: Potential Pathogenic Variants in ACD, ATM, BAP1, and POT1
Authors: Pastorino Lorenza , Andreotti Virginia , Dalmasso Bruna , Vanni Irene , Ciccarese Giulia , Mandalà Mario , Spadola Giuseppe , Pizzichetta Maria , Ponti Giovanni , Tibiletti Maria , Sala Elena , Genuardi Maurizio , Chiurazzi Pietro , Maccanti Gabriele , Manoukian Siranoush , Sestini Serena , Danesi Rita , Zampiga Valentina , La Starza Roberta , Stanganelli Ignazio , Ballestrero Alberto , Mastracci Luca , Grillo Federica , Sciallero Stefania , Cecchi Federica , Tanda Enrica , Spagnolo Francesco , Queirolo Paola ,   Italian Melanoma Intergroup (IMI), Goldstein Alisa , Bruno William , Ghiorzo Paola
Published: April 2020

The contribution of recently established or candidate susceptibility genes to melanoma missing heritability has yet to be determined. Multigene panel testing could increase diagnostic yield and better define the role of candidate genes. We characterized 273 CDKN2A/ARF and CDK4-negative probands through a custom-designed targeted gene panel that included CDKN2A/ARF, CDK4, ACD, BAP1, MITF, POT1, TERF2IP, ATM, and PALB2. Co-segregation, loss of heterozygosity (LOH)/protein expression analysis, and splicing characterization were performed to improve variant classification. We identified 16 (5.9%) pathogenic and likely pathogenic variants in established high/medium penetrance cutaneous melanoma susceptibility genes (BAP1, POT1, ACD, MITF, and TERF2IP), including two novel variants in BAP1 and 4 in POT1. We also found four deleterious and five likely deleterious variants in ATM (3.3%). Thus, including potentially deleterious variants in ATM increased the diagnostic yield to about 9%. Inclusion of rare variants of uncertain significance would increase the overall detection yield to 14%. At least 10% of melanoma missing heritability may be explained through panel testing in our population. To our knowledge, this is the highest frequency of putative ATM deleterious variants reported in melanoma families, suggesting a possible role in melanoma susceptibility, which needs further investigation.
Self-Metathesis of Methyl Oleate Using Ru-NHC Complexes: A Kinetic Study
Authors: Renom Carrasco Marc , Nikitine Clémence , Hamou Mohamed , de Bellefon Claude , Thieuleux Chloé , Meille Valérie
Published: April 2020

A kinetic study concerning the self-metathesis of methyl oleate and methyl elaidate was performed, using a variety of NHC-ruthenium pre-catalysts, bearing either mesityl groups or di-isopropyl-phenyl groups on the NHC ligand and various trans ligands with respect to the NHC unit. We showed that the system can be satisfactorily described using one initiation constant per pre-catalyst and four propagation constants that, conversely, do not depend on the pre-catalyst. The difference of reactivity with oleate (Z) and elaidate (E) can be fully explained by the propagation parameters; the studied pre-catalysts initiate with the same rate starting from the Z or the E olefin. The ranking of the propagation parameters is driven by the thermodynamic equilibrium. The transformation rates of Z and E isomers is only driven by these propagation constants and nothing differentiates the initiation step.
Acid Hydrolysis of Lignocellulosic Biomass: Sugars and Furfurals Formation
Authors: Świątek Katarzyna , Gaag Stephanie , Klier Andreas , Kruse Andrea , Sauer Jörg , Steinbach David
Published: April 2020

Hydrolysis of lignocellulosic biomass is a crucial step for the production of sugars and biobased platform chemicals. Pretreatment experiments in a semi-continuous plant with diluted sulphuric acid as catalyst were carried out to measure the time-dependent formation of sugars (glucose, xylose, mannose), furfurals, and organic acids (acetic, formic, and levulinic acid) at different hydrolysis temperatures (180, 200, 220 °C) of one representative of each basic type of lignocellulose: hardwood, softwood, and grass. The addition of the acid catalyst is followed by a sharp increase in the sugar concentration. Xylose and mannose were mainly formed in the initial stages of the process, while glucose was released slowly. Increasing the reaction temperature had a positive effect on the formation of furfurals and organic acids, especially on hydroxymehtylfurfural (HMF) and levulinic acid, regardless of biomass type. In addition, large amounts of formic acid were released during the hydrolysis of miscanthus grass. Structural changes in the solid residue show a complete hydrolysis of hemicellulose at 180 °C and of cellulose at 200 °C after around 120 min reaction time. The results obtained in this study can be used for the optimisation of the hydrolysis conditions and reactor design to maximise the yields of desired products, which might be sugars or furfurals.
Spatiotemporal Mislocalization of Nuclear Membrane-Associated Proteins in γ-Irradiation-Induced Senescent Cells
Authors: Svobodová Kovaříková Alena , Bártová Eva , Kovařík Aleš , Lukášová Emilie
Published: April 2020

Cellular senescence, induced by genotoxic or replication stress, is accompanied by defects in nuclear morphology and nuclear membrane-heterochromatin disruption. In this work, we analyzed cytological and molecular changes in the linker of nucleoskeleton and cytoskeleton (LINC) complex proteins in senescence triggered by γ-irradiation. We used human mammary carcinoma and osteosarcoma cell lines, both original and shRNA knockdown clones targeting lamin B receptor (LBR) and leading to LBR and lamin B (LB1) reduction. The expression status and integrity of LINC complex proteins (nesprin-1, SUN1, SUN2), lamin A/C, and emerin were analyzed by immunodetection using confocal microscopy and Western blot. The results show frequent mislocalization of these proteins from the nuclear membrane to cytoplasm and micronuclei and, in some cases, their fragmentation and amplification. The timing of these changes clearly preceded the onset of senescence. The LBR deficiency triggered neither senescence nor changes in the LINC protein distribution before irradiation. However, the cytological changes following irradiation were more pronounced in shRNA knockdown cells compared to original cell lines. We conclude that mislocalization of LINC complex proteins is a significant characteristic of cellular senescence phenotypes and may influence complex events at the nuclear membrane, including trafficking and heterochromatin attachment.
The Cellular Impact of the ZIKA Virus on Male Reproductive Tract Immunology and Physiology
Authors: Almeida Raquel das Neves , Braz-de-Melo Heloisa Antoniella , Santos Igor de Oliveira , Corrêa Rafael , Kobinger Gary P. , Magalhaes Kelly Grace
Published: April 2020

Zika virus (ZIKV) has been reported by several groups as an important virus causing pathological damage in the male reproductive tract. ZIKV can infect and persist in testicular somatic and germ cells, as well as spermatozoa, leading to cell death and testicular atrophy. ZIKV has also been detected in semen samples from ZIKV-infected patients. This has huge implications for human reproduction. Global scientific efforts are being applied to understand the mechanisms related to arboviruses persistency, pathogenesis, and host cellular response to suggest a potential target to develop robust antiviral therapeutics and vaccines. Here, we discuss the cellular modulation of the immunologic and physiologic properties of the male reproductive tract environment caused by arboviruses infection, focusing on ZIKV. We also present an overview of the current vaccine effects and therapeutic targets against ZIKV infection that may impact the testis and male fertility.
Abnormal Reinnervation of Denervated Areas Following Nerve Injury Facilitates Neuropathic Pain
Authors: Leibovich Hodaya , Buzaglo Nahum , Tsuriel Shlomo , Peretz Liat , Caspi Yaki , Katz Ben , Lev Shaya , Lichtstein David , Binshtok Alexander M.
Published: April 2020

An injury to peripheral nerves leads to skin denervation, which often is followed by increased pain sensitivity of the denervated areas and the development of neuropathic pain. Changes in innervation patterns during the reinnervation process of the denervated skin could contribute to the development of neuropathic pain. Here, we examined the changes in the innervation pattern during reinnervation and correlated them with the symptoms of neuropathic pain. Using a multispectral labeling technique—PainBow, which we developed, we characterized dorsal root ganglion (DRG) neurons innervating distinct areas of the rats’ paw. We then used spared nerve injury, causing partial denervation of the paw, and examined the changes in innervation patterns of the denervated areas during the development of allodynia and hyperalgesia. We found that, differently from normal conditions, during the development of neuropathic pain, these areas were mainly innervated by large, non-nociceptive neurons. Moreover, we found that the development of neuropathic pain is correlated with an overall decrease in the number of DRG neurons innervating these areas. Importantly, treatment with ouabain facilitated reinnervation and alleviated neuropathic pain. Our results suggest that local changes in peripheral innervation following denervation contribute to neuropathic pain development. The reversal of these changes decreases neuropathic pain.
Potency and Selectivity of SMAC/DIABLO Mimetics in Solid Tumor Therapy
Authors: Zhao Xiao-Yun , Wang Xiu-Yun , Wei Qi-Yao , Xu Yan-Ming , Lau Andy T. Y.
Published: April 2020

Aiming to promote cancer cell apoptosis is a mainstream strategy of cancer therapy. The second mitochondria-derived activator of caspase (SMAC)/direct inhibitor of apoptosis protein (IAP)-binding protein with low pI (DIABLO) protein is an essential and endogenous antagonist of inhibitor of apoptosis proteins (IAPs). SMAC mimetics (SMs) are a series of synthetically chemical compounds. Via database analysis and literature searching, we summarize the potential mechanisms of endogenous SMAC inefficiency, degradation, mutation, releasing blockage, and depression. We review the development of SMs, as well as preclinical and clinical outcomes of SMs in solid tumor treatment, and we analyze their strengths, weaknesses, opportunities, and threats from our point of view. We also highlight several questions in need of further investigation.
Initiation of X Chromosome Inactivation during Bovine Embryo Development
Authors: Yu Bo , van Tol Helena T. A. , Stout Tom A.E. , Roelen Bernard A. J.
Published: April 2020

X-chromosome inactivation (XCI) is a developmental process that aims to equalize the dosage of X-linked gene products between XY males and XX females in eutherian mammals. In female mouse embryos, paternal XCI is initiated at the 4-cell stage; however, the X chromosome is reactivated in the inner cell mass cells of blastocysts, and random XCI is subsequently initiated in epiblast cells. However, recent findings show that the patterns of XCI are not conserved among mammals. In this study, we used quantitative RT-PCR and RNA in situ hybridization combined with immunofluorescence to investigate the pattern of XCI during bovine embryo development. Expression of XIST (X-inactive specific transcript) RNA was significantly upregulated at the morula stage. For the first time, we demonstrate that XIST accumulation in bovine embryos starts in nuclei of female morulae, but its colocalization with histone H3 lysine 27 trimethylation was first detected in day 7 blastocysts. Both in the inner cell mass and in putative epiblast precursors, we observed a proportion of cells with XIST RNA and H3K27me3 colocalization. Surprisingly, the onset of XCI did not lead to a global downregulation of X-linked genes, even in day 9 blastocysts. Together, our findings confirm that diverse patterns of XCI initiation exist among developing mammalian embryos.
Inflammatory Responses during Tumour Initiation: From Zebrafish Transgenic Models of Cancer to Evidence from Mouse and Man
Authors: Elliot Abigail , Myllymäki Henna , Feng Yi
Published: April 2020

The zebrafish is now an important model organism for cancer biology studies and provides unique and complementary opportunities in comparison to the mammalian equivalent. The translucency of zebrafish has allowed in vivo live imaging studies of tumour initiation and progression at the cellular level, providing novel insights into our understanding of cancer. Here we summarise the available transgenic zebrafish tumour models and discuss what we have gleaned from them with respect to cancer inflammation. In particular, we focus on the host inflammatory response towards transformed cells during the pre-neoplastic stage of tumour development. We discuss features of tumour-associated macrophages and neutrophils in mammalian models and present evidence that supports the idea that these inflammatory cells promote early stage tumour development and progression. Direct live imaging of tumour initiation in zebrafish models has shown that the intrinsic inflammation induced by pre-neoplastic cells is tumour promoting. Signals mediating leukocyte recruitment to pre-neoplastic cells in zebrafish correspond to the signals that mediate leukocyte recruitment in mammalian tumours. The activation state of macrophages and neutrophils recruited to pre-neoplastic cells in zebrafish appears to be heterogenous, as seen in mammalian models, which provides an opportunity to study the plasticity of innate immune cells during tumour initiation. Although several potential mechanisms are described that might mediate the trophic function of innate immune cells during tumour initiation in zebrafish, there are several unknowns that are yet to be resolved. Rapid advancement of genetic tools and imaging technologies for zebrafish will facilitate research into the mechanisms that modulate leukocyte function during tumour initiation and identify targets for cancer prevention.
Targeted Phototherapy for Malignant Pleural Mesothelioma: Near-Infrared Photoimmunotherapy Targeting Podoplanin
Authors: Nishinaga Yuko , Sato Kazuhide , Yasui Hirotoshi , Taki Shunichi , Takahashi Kazuomi , Shimizu Misae , Endo Rena , Koike Chiaki , Kuramoto Noriko , Nakamura Shota , Fukui Takayuki , Yukawa Hiroshi , Baba Yoshinobu , K. Kaneko Mika , Chen-Yoshikawa Toyofumi F. , Kobayashi Hisataka , Kato Yukinari , Hasegawa Yoshinori
Published: April 2020

Malignant pleural mesothelioma (MPM) has extremely limited treatment despite a poor prognosis. Moreover, molecular targeted therapy for MPM has not yet been implemented; thus, a new targeted therapy is highly desirable. Near-infrared photoimmunotherapy (NIR-PIT) is a recently developed cancer therapy that combines the specificity of antibodies for targeting tumors with toxicity induced by the photoabsorber after exposure to NIR-light. In this study, we developed a new phototherapy targeting podoplanin (PDPN) for MPM with the use of both NIR-PIT and an anti-PDPN antibody, NZ-1. An antibody–photosensitizer conjugate consisting of NZ-1 and phthalocyanine dye was synthesized. In vitro NIR-PIT-induced cytotoxicity was measured with both dead cell staining and luciferase activity on various MPM cell lines. In vivo NIR-PIT was examined in both the flank tumor and orthotopic mouse model with in vivo real-time imaging. In vitro NIR-PIT-induced cytotoxicity was NIR-light dose dependent. In vivo NIR-PIT led to significant reduction in both tumor volume and luciferase activity in a flank model (p < 0.05, NIR-PIT group versus NZ-1-IR700 group). The PDPN-targeted NIR-PIT resulted in a significant antitumor effect in an MPM orthotopic mouse model (p < 0.05, NIR-PIT group versus NZ-1-IR700 group). This study suggests that PDPN-targeted NIR-PIT could be a new promising treatment for MPM.
Targeting the Epigenetic Non-Coding RNA MALAT1/Wnt Signaling Axis as a Therapeutic Approach to Suppress Stemness and Metastasis in Hepatocellular Carcinoma
Authors: Chang Hang-Lung , Bamodu Oluwaseun Adebayo , Ong Jiann-Ruey , Lee Wei-Hwa , Yeh Chi-Tai , Tsai Jo-Ting
Published: April 2020

Background: With recorded under-performance of current standard therapeutic strategies as highlighted by high rates of post-treatment (resection or local ablation) recurrence, resistance to chemotherapy, poor overall survival, and an increasing global incidence, hepatocellular carcinoma (HCC) constitutes a medical challenge. Accumulating evidence implicates the presence of HCC stem cells (HCC-SCs) in HCC development, drug-resistance, recurrence, and progression. Therefore, treatment strategies targeting both HCC-SCs and non-CSCs are essential. Methods: Recently, there has been an increasing suggestion of MALAT1 oncogenic activity in HCC; however, its role in HCC stemness remains unexplored. Herein, we investigated the probable role of MALAT1 in the SCs-like phenotype of HCC and explored likely molecular mechanisms by which MALAT1 modulates HCC-SCs-like and metastatic phenotypes. Results: We showed that relative to normal, cirrhotic, or dysplastic liver conditions, MALAT1 was aberrantly expressed in HCC, similar to its overexpression in Huh7, Mahlavu, and SK-Hep1 HCC cells lines, compared to the normal liver cell line THLE-2. We also demonstrated a positive correlation between MALAT1 expression and poor cell differentiation status in HCC using RNAscope. Interestingly, we demonstrated that shRNA-mediated silencing of MALAT1 concomitantly downregulated the expression levels of β-catenin, Stat3, c-Myc, CK19, vimentin, and Twist1 proteins, inhibited HCC oncogenicity, and significantly suppressed the HCC-SCs-related dye-effluxing potential of HCC cells and reduced their ALDH-1 activity, partially due to inhibited MALAT1-β-catenin interaction. Additionally, using TOP/FOP (TCL/LEF-Firefly luciferase) Flash, RT-PCR, and western blot assays, we showed that silencing MALAT1 downregulates β-catenin expression, dysregulates the canonical Wnt signaling pathway, and consequently attenuates HCC tumorsphere formation efficiency, with concurrent reduction in CD133+ and CD90+ HCC cell population, and inhibits tumor growth in SK-Hep1-bearing mice. Conclusions: Taken together, our data indicate that MALAT1/Wnt is a targetable molecular candidate, and the therapeutic targeting of MALAT1/Wnt may constitute a novel promising anticancer strategy for HCC treatment.
Arabidopsis Voltage-Dependent Anion Channels (VDACs): Overlapping and Specific Functions in Mitochondria
Authors: Hemono Mickaële , Ubrig Élodie , Azeredo Kevin , Salinas-Giegé Thalia , Drouard Laurence , Duchêne Anne-Marie
Published: April 2020

Voltage-dependent anion channels (VDACs) are essential components of the mitochondrial outer membrane. VDACs are involved in the exchange of numerous ions and molecules, from ATP to larger molecules such as tRNAs, and are supposed to adjust exchanges in response to cell signals and stresses. Four major VDACs have been identified in Arabidopsis thaliana. The goal of this study was to explore the specific functions of these proteins, in particular, in tRNA import into mitochondria and stress response. The main results were: (i) VDACs appeared to differentially interact with tRNAs, and VDAC4 could be the major tRNA channel on the outer membrane, (ii) a VDAC3 mRNA isoform was found induced by different stresses, suggesting that VDAC3 might be specifically involved in early steps of stress response and (iii) an analysis of vdac3 and vdac1 mutant lines showed that VDAC3 and VDAC1 shared some, but not all functions. In conclusion, this work brings new knowledge on VDACs, which do not appear as interchangeable pores of the outer membrane and each VDAC has its own specificity.
Metals, n-Alkanes, Hopanes, and Polycyclic Aromatic Hydrocarbon in Sediments from Three Amazonian Streams Crossing Manaus (Brazil)
Authors: de Melo Moacir G. , de Castro Leonildo G. , Reis Laís A. , Costa Gilcllys de S. , Silva Felipe M. A. da , Bolson Marcos A. , Chaar Jamal da S. , Koolen Hector H. F. , Sargentini Junior Ézio , Bataglion Giovana A.
Published: April 2020

Pollution is increasing in the Amazon region and its real impact is still unclear. Since this region is of great interest to the global community, this study aimed to assess geochemical biomarkers and metals in sediments from three streams crossing Manaus, a Brazilian city of 2.1 million inhabitants located in the heart of the Amazon rainforest. The Mindu and Quarenta streams criss-cross the urban area of Manaus and receive domestic effluents from many heavily populated districts. In addition, the Quarenta stream is subjected to effluents from the industrial district of Manaus. The Tarumã-Açu stream is mostly covered by vegetation, although the region presents some occurrence of family farming, floating petrol station, marinas, and floating restaurants and bars. n-Alkanes were determined by Gas Chromatography with Flame Ionization Detection (GC-FID), whereas hopanes and polycyclic aromatic hydrocarbons (PAHs) were determined by Gas Chromatography coupled to Mass Spectrometry (GC-MS). The metals Ag, Cd, Cr, Co, Cu, Mn, Ni, Pb, and Zn were determined by Inductively Coupled Plasma Optical Emission Spectroscopy (ICP-OES) after microwave-assisted acid digestion. Concentrations of total PAHs and metals were higher in sediments from the urban streams Mindu and Quarenta because of the occurrence of more intense and diverse sources of pollution. In addition, some sediment samples from both these streams presented concentrations of fluoranthene, phenanthrene, and metals higher than the limits of low probability of adverse effects on biota established by the international guideline and by the Brazilian legislation. A similar total n-alkane concentration for sediments from all streams associated with profiles of n-alkanes with no odd/even hydrocarbon predominance suggests that biomass burning is an important source of hydrocarbons. Petroleum-derived products also represented a source for n-alkanes, as confirmed by the presence of α,β-hopanes, including an α,β-homohopane series from C31 to C35 with the presence of both 22S and 22R epimers. This is the first report on n-alkanes, PAHs, and hopanes in sediments from the Mindu, Quarenta, and Tarumã-Açu streams. The concentrations reported herein may be considered as baseline data in future monitoring programs of these streams.
MnNH4P2O7-Based Coating for High Temperature Assessment on the Surfaces of Cement Composites
Authors: Rajadurai Rajagopalan Sam , Lee Jong-Han , Choi Eunsoo , Kang Joo-Won
Published: April 2020

This study examines the implementation of an MnNH4P2O7 (ammonium manganese III pyrophosphate)-based coating on structural elements to obtain temperature information with color changes. Based on the MnNH4P2O7 material, a coating was prepared and deposited on cement mortar surfaces. Heat experiments were then conducted to evaluate the thermochromism on the fabricated samples. The coated samples exhibited a superior irreversible thermochromic property at 400 °C with a color change from dark violet to light grayish blue at the heated surface. The color changes were retrieved at each temperature using a digital camera, and the change in color properties was evaluated in the RGB and L*a*b* color spaces using image processing techniques. With increasing temperature from room temperature, the RGB values were almost constant until 200 °C. At higher temperatures, the color changes started to accelerate until 400 °C. The values showed a 167%, 567%, and 49% increase in R, G, and B values, respectively, at 400 °C. In the L*a*b* color space, when the temperature was increased from room temperature to 400 °C, the L*a*b* values showed an increase of 211%, a decrease of 94%, and an increase of 78%, respectively.
Re-Oxidation of ZnO Clusters Grown on HOPG
Authors: Morales Carlos , del Campo Adolfo , Méndez Javier , Prieto Pilar , Soriano Leonardo
Published: April 2020

This article studies the chemical interaction between ZnO and highly oriented pyrolytic graphite for as grown and thermally treated samples. In-situ X-ray photoelectron spectroscopy and ex-situ Raman spectroscopy confirm that graphite is affected by these processes, becoming oxidized and defective only in the presence of ZnO clusters that become recrystallized upon thermal re-oxidation processes performed at 400 °C. By comparing these results with other identical experiments performed with ZnO clusters grown on graphene and even with CoO clusters grown on graphite, the present results show how the interaction of the ZnO clusters with graphitic substrates depend on two factors—firstly, the mode of growth and corresponding morphology, and secondly, the reactivity of the graphitic substrates, either graphene or graphite. The results presented here will help us understand the fundamental interactions in ZnO/graphitic heterostructures and to define their operating limits.
Synthesis of Polypyrrole/V2O5 Composite Film on the Surface of Magnesium Using a Mild Vapor Phase Polymerization (VPP) Method for Corrosion Resistance
Authors: Li Jiawei , He Yuan , Sun Yanan , Zhang Xiuming , Shi Wei , Ge Dongtao
Published: April 2020

The vapor phase polymerization (VPP) method is a conventional strategy for synthesizing conducting polymers (CPs) on the surfaces of various materials. However, the current VPP method performed on a metal surface usually requires harsh reaction conditions, such as high temperature and low vacuum. In this paper, a polypyrrole (PPy) and vanadium pentoxide (V2O5) composite film was synthesized on the surface of Mg using a mild VPP method. Here, V2O5 was used as an oxidant, and it was found that the oxidation of pyrrole (Py) vapor on the surface of V2O5, which had been previously coated on the surface of Mg, could be performed at room temperature under normal atmospheric pressure. The formation of the PPy/V2O5 composite was verified by Fourier transform infrared spectroscopy (FTIR) and energy dispersive X-ray (EDX) spectroscopy. A thermogravimetric analyzer (TGA) was used to study the thermal stability of the composite. Subsequent corrosion tests showed that the PPy/V2O5 composite film could slow down the corrosion of Mg in 3.5 wt% NaCl. It is expected that the mild VPP method may find great potential in the fields of synthesis of CPs and the corrosion protection of reactive metals.
Mutated Human P-Selectin Glycoprotein Ligand-1 and Viral Protein-1 of Enterovirus 71 Interactions on Au Nanoplasmonic Substrate for Specific Recognition by Surface-Enhanced Raman Spectroscopy
Authors: Sivashanmugan Kundan , Lee Han , Liao Jiunn-Der , Wang Chen-Chu , Lin Chen-Hsueh , Yang Yuh-Shyong , Sitjar Jaya
Published: April 2020

Protein tyrosine sulfation is a common post-translational modification that stimulates intercellular or extracellular protein-protein interactions and is responsible for various important biological processes, including coagulation, inflammation, and virus infections. Recently, human P-selectin glycoprotein ligand-1 (PSGL-1) has been shown to serve as a functional receptor for enterovirus 71 (EV71). It has been proposed that the capsid viral protein VP1 of EV71 is directly involved in this specific interaction with sulfated or mutated PSGL-1. Surface-enhanced Raman spectroscopy (SERS) is used to distinguish PSGL-1 and VP1 interactions on an Au nanoporous substrate and identify specific VP1 interaction positions of tyrosine residue sites (46, 48, and 51). The three tyrosine sites in PSGL-1 were replaced by phenylalanine (F), as determined using SERS. A strong phenylalanine SERS signal was obtained in three regions of the mutated protein on the nanoporous substrate. The mutated protein positions at (51F) and (48F, 51F) produced a strong SERS peak at 1599–1666 cm−1, which could be related to a binding with the mutated protein and anti-sulfotyrosine interactions on the nanoporous substrate. A strong SERS effect of the mutated protein and VP1 interactions appeared at (48F), (51F), and (46F, 48F). In these positions, there was less interaction with VP1, as indicated by a strong phenylalanine signal from the mutated protein.
Studies of Parylene/Silicone-Coated Soft Bio-Implantable Optoelectronic Device
Authors: Shin Gunchul
Published: April 2020

Optogenetics is a new neuroscience technology, consisting of biological technology that activates a nerve by light and engineering technology that transmits light to the nerve. In order to transmit light to the target nerve, fiber optics or light-emitting devices have been inserted into the living body, while the motions or emotions of freely moving animals can be controlled using a wirelessly operated optoelectronic device. However, in order to keep optoelectronic devices small in size and operational for a long time in vivo, the need for a thin but robust protective layer has emerged. In this paper, we developed a protective layer, consisting of Parylene and silicone that can protect soft optoelectronic devices inside saline solution for a long time. A chemical vapor deposited Parylene C film between the polydimethylsiloxane layers showed promising optical, mechanical, and water-barrier properties. We expect that these protective layers can be used as an encapsulation film on bio-implantable devices, including wireless optogenetic applications.
Study the Influence of Surface Morphology and Lubrication Pressure on Tribological Behavior of 316L–PTFE Friction Interface in High-Water-Based Fluid
Authors: Man Jiaxiang , Zhao Jiyun , Song Liangchen , Yang Haifeng
Published: April 2020

Because of the low viscosity of high-water-based fluids, the intense wear and leakage of key friction pairs represent a bottleneck to the wide application of the high-water-based hydraulic motor in engineering machinery. In this work, based on the common characteristics of plane friction pairs, the friction experiments of a 316L stainless steel (316L)–polytetrafluoroethylene (PTFE) friction pair under various working condition were carried out by a self-designed friction experimental system with fluid lubrication. The influence of lubrication pressure and surface morphology on the 316L–PTFE friction pair was investigated both experimentally and theoretically. The experimental and numerical results indicated that increasing lubrication pressure reduced the surface wear of PTFE sample, but the leakage of 316L–PTFE friction pair also increased. It could not form an effective fluid lubrication film in the 316L–PTFE friction pair under low lubrication pressure, which caused the severe wear in friction pair interface. The smooth 316L surface could be conducive to the formation of high-water-based fluid lubrication film in 316L–PTFE friction interface. The pressure distribution of high-water-based fluid lubrication film in 316L–PTFE friction pair was also obtained in fluent. The PTFE surface was easily worn when the lubrication film in the friction pair was too thin or uneven. The friction and wear were obviously improved when the normal load was balanced by the bearing capacity of the high-water-based fluid lubrication film.
Deposition Mechanism and Thickness Control of CVD SiC Coatings on NextelTM440 Fibers
Authors: Wang Yi , Sun Jian , Sheng Bing , Cheng Haifeng
Published: April 2020

SiC coatings were successfully synthesized on NextelTM440 fibers by chemical vapor deposition (CVD) using methyltrichlorosilane as the original SiC source at 1373 K. After deposited, the fibers were fully surrounded by uniform coatings with some bulges. The X-ray diffraction (XRD), X-ray photoelectron spectroscopy (XPS) and high-resolution transmission electron microscopy (HR-TEM) results indicated that the coatings were composed of β-SiC and free carbon. Moreover, thickness control of the coatings could be carried out by adjusting the deposition time. The coating thickness rose exponentially, and the exterior of the coatings became looser as the deposition time increased. The thickness of about 1.5 µm was obtained after depositing for 4 h. The coating thickness was also theoretically calculated, and the result agreed well with the measured thickness. Finally, the related deposition mechanism is discussed and a deposition model is built.
Development and Characterization of Electrospun Nanostructures Using Polyethylene Oxide: Potential Means for Incorporation of Bioactive Compounds
Authors: Ramos Sergiana dos P. , Giaconia Michele A. , Do Marco Jonas T. , Paiva Robert da S. , De Rosso Veridiana V. , Lemes Ailton C. , Egea Mariana B. , Assis Marcelo , Mazzo Tatiana M. , Longo Elson , Braga Anna R. C.
Published: April 2020

The development of processes for stabilization of the properties of bioactive compounds has been studied in recent years, and the use of nanotechnology is among the most discussed routes. The present work addressed the assembly of nanostructures using polyethylene oxide (PEO), the production of core-shell nanofibers (NFs) with bioactive compounds, and the evaluation of their microscopic and physical characteristics. Aqueous solutions of PEO were electrospun by varying different process and solution parameters (PEO and NaCl concentrations, feeding rate, the tip-to-collector distance (TCD), and applied voltage) in order to optimize production of nanostructures. The best condition obtained was evaluated to form core-shell NFs composed by jussara pulp as a source of anthocyanins. To assess the production of NFs with PEO and jussara pulp, feed solutions were prepared in acetate buffer (pH 4.5) with 6% PEO and 10% lyophilized jussara pulp, at a feeding rate of 150 μL·h−1 and TCD of 15 cm using an applied voltage of 10 kV to form core-shell NFs. The results revealed the formation of core-shell NFs with a diameter of 126.5 ± 50.0 nm. The outcomes achieved represent a crucial step in the application of anthocyanins in food systems as pigments, establishing a basis for further research on the incorporation of nanomaterials into foodstuff.
Performance and Energy Footprint Assessment of FPGAs and GPUs on HPC Systems Using Astrophysics Application
Authors: Goz David , Ieronymakis Georgios , Papaefstathiou Vassilis , Dimou Nikolaos , Bertocco Sara , Simula Francesco , Ragagnin Antonio , Tornatore Luca , Coretti Igor , Taffoni Giuliano
Published: April 2020

New challenges in Astronomy and Astrophysics (AA) are urging the need for many exceptionally computationally intensive simulations. “Exascale” (and beyond) computational facilities are mandatory to address the size of theoretical problems and data coming from the new generation of observational facilities in AA. Currently, the High-Performance Computing (HPC) sector is undergoing a profound phase of innovation, in which the primary challenge to the achievement of the “Exascale” is the power consumption. The goal of this work is to give some insights about performance and energy footprint of contemporary architectures for a real astrophysical application in an HPC context. We use a state-of-the-art N-body application that we re-engineered and optimized to exploit the heterogeneous underlying hardware fully. We quantitatively evaluate the impact of computation on energy consumption when running on four different platforms. Two of them represent the current HPC systems (Intel-based and equipped with NVIDIA GPUs), one is a micro-cluster based on ARM-MPSoC, and one is a “prototype towards Exascale” equipped with ARM-MPSoCs tightly coupled with FPGAs. We investigate the behavior of the different devices where the high-end GPUs excel in terms of time-to-solution while MPSoC-FPGA systems outperform GPUs in power consumption. Our experience reveals that considering FPGAs for computationally intensive application seems very promising, as their performance is improving to meet the requirements of scientific applications. This work can be a reference for future platform development for astrophysics applications where computationally intensive calculations are required.
Optimal Design in Roller Pump System Applications for Linear Infusion
Authors: Manopoulos Christos , Savva Giannis , Tsoukalis Achilleas , Vasileiou Georgios , Rogkas Nikolaos , Spitas Vasilios , Tsangaris Sokrates
Published: April 2020

In this study, an infusion roller pump comprising two separate innovative resilient tube designs is presented. The first incorporates the flexible tubing cross-section area in its relaxed state as a lenticular one for power reduction reasons. The second keeps the previous lenticular cross-section along its length, while it additionally incorporates an inflating portion, for creating a momentary flow positive pulse to balance the void generated by the roller disengagement. Fluid–Structure Interaction (FSI) simulations cannot provide quantitatively realistic results, due to the limitation of full compression of the tube, and are only used qualitatively to reveal by which way to set the inflated portion along the tube length in order to suppress backflow and achieve constant flow rate. Finally, indirect lumen volume measurements were performed numerically and an optimum design was found testing eight design approaches. These indirect fluid volume measurements assess the optimum inflated tube’s portion leading to backflow and pulsating elimination. The optimum design has an inflation portion of 75 degrees covering almost 42% of the curved part of the tube, while it has a constant zone with the maximum value of inflated lenticular cross-section, within the portion, of 55 degrees covering about 73% of the inflation portion.
Employing Behavioral Analysis to Predict User Attitude towards Unwanted Content in Online Social Network Services: The Case of Makkah Region in Saudi Arabia
Authors: Alsulami Mashael M. , Al-Aama Arwa Yousef
Published: April 2020

The high volume of user-generated content caused by the popular use of online social network services exposes users to different kinds of content that can be harmful or unwanted. Solutions to protect user privacy from such unwanted content cannot be generalized due to different perceptions of what is considered as unwanted for each individual. Thus, there is a substantial need to design a personalized privacy protection mechanism that takes into consideration differences in users’ privacy requirements. To achieve personalization, a user attitude about certain content must be acknowledged by the automated protection system. In this paper, we investigate the relationship between user attitude and user behavior among users from the Makkah region in Saudi Arabia to determine the applicability of considering users’ behaviors, as indicators of their attitudes towards unwanted content. We propose a semi-explicit attitude measure to infer user attitude from user-selected examples. Results revealed that semi-explicit attitude is a more reliable attitude measure to represent users’ actual attitudes than self-reported preferences for our sample. In addition, results show a statistically significant relationship between a user’s commenting behavior and the user’s semi-explicit attitude within our sample. Thus, commenting behavior is an effective indicator of the user’s semi-explicit attitude towards unwanted content for a user from the Makkah region in Saudi Arabia. We believe that our findings can have positive implications for designing an effective automated personalized privacy protection mechanism by reproducing the study considering other populations.