bluuebunny/crossref_metadata_2025 huggingface dataset:
Photophysical Exploration of Alectinib and Rilpivirine: Insights from Theory and Experiment
Authors: Zhang Chun , Yang Yuting , Gan Suya , Ren Aimin , Zhou Yu-Bo , Li Jia , Xiang Da-Jun , Wang Wen-Long
Published: August 2023

Due to the excellent characteristics of fluorescence-based imaging, such as non-invasive detection of biomarkers in vitro and in vivo with high sensitivity, good spatio-temporal resolution and fast response times, it has shown significant prospects in various applications. Compounds with both biological activities and fluorescent properties have the potential for integrated diagnosis and treatment application. Alectinib and Rilpivirine are two excellent drugs on sale that represent a clinically approved targeted therapy for ALK-rearranged NSCLC and have exhibited more favorable safety and tolerance profiles in Phase III clinical trials, ECHO and THRIVE, respectively. The optical properties of these two drugs, Alectinib and Rilpivirine, were deeply explored, firstly through the simulation of molecular structures, electrostatic potential, OPA/TPA and emission spectral properties and experiments on UV-vis spectra, fluorescence and cell imaging. It was found that Alectinib exhibited 7.8% of fluorescence quantum yield at the 450 nm excited wavelength, due to a larger electronic transition dipole moment (8.41 Debye), bigger charge transition quantity (0.682 e) and smaller reorganization energy (2821.6 cm−1). The stronger UV-vis spectra of Rilpivirine were due to a larger electron–hole overlap index (Sr: 0.733) and were also seen in CDD plots. Furthermore, Alectinib possessed obvious active two-photon absorption properties (δmaxTPA* ϕ = 201.75 GM), which have potential TPA imaging applications in bio-systems. Lastly, Alectinib and Rilpivirine displayed green fluorescence in HeLa cells, suggesting the potential ability for biological imaging. Investigation using theoretical and experimental methods is certainly encouraged, given the particular significance of developing integrated diagnosis and treatment.
The Synthesis and Base-Induced Breakdown of Triaryl 1,4-Oxathiins—An Experimental and DFT Study
Authors: Nicol Eric A. , Sing Matthew , Luu Lilly U. , Remigio Erwin J. , Mills Michelle B. , Schwan Adrian L.
Published: August 2023

1,4-Oxathiins are valued for a breadth of bioactivities and are known commercial fungicides. This article explores a novel preparation of 2,3,6-trisubstituted 1,4-oxathiin-S,S-dioxides via the reaction of benzyl 1-alkynyl sulfones and aryl aldehydes under basic conditions. A total of 20 examples possessing exclusively a trans arrangement of the 2,3-diaryl substituents are exhibited; the products demonstrate a variation of functional groups on the aryl ring attached to the heterocyclic ring system. The preparation is hindered by the base sensitivity of the products, and a ring-opened by-product typically contaminates the reaction mixture. A DFT assessment of the overall system includes a lithium counterion and offers possible pathways for the incorporation of the aldehyde, the cyclization step and the requisite proton transfers. In addition, the DFT work reveals options for the ring opening chemistry. It appears the trans 2,3-diaryl selectivity is set during the cyclization stage of the reaction sequence. The practical work uncovers a new reaction pathway to create a family of novel 1,4-oxathiin-S,S-dioxides whereas the computational work offers an understanding of the structures and possible mechanisms involved.
Bioactive Compounds from P. pertomentellum That Regulate QS, Biofilm Formation and Virulence Factor Production of P. aeruginosa
Authors: Hernández-Moreno Lida V. , Pabón-Baquero Ludy C. , Prieto-Rodriguez Juliet A. , Patiño-Ladino Oscar J.
Published: August 2023

Pseudomonas aeruginosa is an opportunistic pathogen responsible for many nosocomial infections. This bacterium uses Quorum Sensing (QS) to generate antimicrobial resistance (AMR) so its disruption is considered a novel approach. The current study describes the antibiofilm and QS inhibitory potential of extract and chemical components from Piper pertomentellum. The methodo- logy included the phytochemical study on the aerial part of the species, the determination of QS inhibition efficacy on Chromobacterium violaceum and the evaluation of the effect on biofilm formation and virulence factors on P. aeruginosa. The phytochemical study led to the isolation and identification of a new piperamide (ethyltembamide 1), together with four known amides (tembamide acetate 2, cepharadione B 3, benzamide 4 and tembamide 5). The results indicated that the ethanolic extract and some fractions reduced violacein production in C. violaceum, however, only the ethanolic extract caused inhibition of biofilm formation of P. aeruginosa on polystyrene microtiter plates. Finally, the investigation determined that molecules (1–5) inhibited the formation of biofilms (50% approximately), while compounds 2–4 can inhibit pyocyanin and elastase production (30–50% approximately). In this way, the study contributes to the determination of the potential of extract and chemical constituents from P pertomentellum to regulate the QS system in P. aeruginosa.
Association between Eating Patterns and Quality of Life in Patients with Familial Hypercholesterolemia
Authors: Maștaleru Alexandra , Abdulan Irina Mihaela , Oancea Andra , Costache Alexandru Dan , Jigoranu Raul-Alexandru , Zota Mădălina Ioana , Roca Mihai , Ioniuc Ileana-Katerina , Rusu Cristina , Trandafir Laura Mihaela , Țarcă Elena , Leon Maria Magdalena , Cumpăt Carmen Marinela , Mitu Florin
Published: August 2023

(1) Background: Familial hypercholesterolemia (FH) is a genetic disease that has autosomal dominant inheritance, being characterized by increased levels of low-density lipoproteins (LDLs) due to a decreased clearance of the circulant LDLs. Alimentation is a key factor in patients with FH. Implementing a restrictive diet may have a significant impact on their quality of life, besides the social and environmental factors. (2) Methods: We realized a prospective study that was conducted in the Cardiovascular Rehabilitation Clinic from the Clinical Rehabilitation Hospital and that included 70 patients with FH and 20 controls (adults with no comorbidities). We evaluated their lipid profile, their quality of life through the Short Form—36 Questionnaire, and their eating habits. (3) Results: Lower scores in the quality-of-life questionnaire were obtained in the FH group both in the case of the physical (73.06 vs. 87.62) and the mental component (75.95 vs. 83.10). Women had better physical function (85 vs. 75) and physical role than men (100 vs. 75). The group aged over 65 has the score lowest for all 10 components. Overeating was driven by boredom and was more frequent on weekends in the FH group. None of the patients in the control group felt loneliness or depression associated with overeating. (4) Conclusions: Overeating in patients with FH is associated with a lower quality of life. The complexity of these patients needs a multidisciplinary approach. Thus, the quality-of-life questionnaire should be implemented in their periodic follow-ups in order to increase their general status, paying special attention to geriatric patients.
Diagnostic Performance of Biomarker-Based Scores as Predictors of Metabolic Dysfunction-Associated Fatty Liver Disease Risk in Healthy Children
Authors: Bergmann Katarzyna , Stefanska Anna , Krintus Magdalena , Szternel Lukasz , Bilinski Wojciech J. , Paradowski Przemyslaw T. , Sypniewska Grazyna
Published: August 2023

Introduction: Metabolic dysfunction-associated fatty liver disease (MAFLD)—a new definition for non-alcoholic fatty liver disease—reflects the impact of metabolic abnormalities on liver function. We assessed the diagnostic accuracy of biomarker-based scores for prediction of MAFLD in apparently healthy children. Methods: This study included 144 children aged 9–11. MAFLD was recognized in 14 girls and 29 boys. Anthropometric indices, glycemia, insulin resistance, lipid profile, enzymes (ALT, AST, GGT, ALP), CRP, N-terminal propeptide of type I procollagen (P1NP) and collagen type I C-telopeptide (CTX-1) levels were measured. Fatty liver and hepatic steatosis index (FLI, HSI) and potential indicators of liver fibrogenesis: P1NP/ALP, P1NP/ALPxALT, P1NP/ALPxCRP were calculated. Results: P1NP/ALPxALT and P1NP/ALPxCRP were significantly higher in subjects with MAFLD. FLI was a good, significant predictor of MAFLD occurrence, regardless of sex. In boys, P1NP/ALPxCRP was a comparable predictor as CRP (OR 1.14 vs. 1.17; p < 0.001). P1NP/ALPxCRP had better discrimination capability in boys (AUC = 0.79; p < 0.001). However, the use of this algorithm did not improve discriminatory power in comparison to CRP (AUC = 0.81; p < 0.001), but gave a better sensitivity for MAFLD prediction (86% vs. 59%). Conclusions: We suggest that P1NP/ALPXCRP is a reliable tool for MAFLD prediction in routine pediatric practice.
Factor Analysis of the Brazilian Questionnaire on Adherence to Ketogenic Dietary Therapy: Keto-Check
Authors: Lopes Neri Lenycia de Cassya , Ferraro Alexandre Archanjo , Guglielmetti Monica , Fiorini Simona , Sampaio Letícia Pereira de Brito , Tagliabue Anna , Ferraris Cinzia
Published: August 2023

Background: several strategies are used to assess adherence to ketogenic dietary therapies (KDTs), the most commonly used being ketonemia or ketonuria, despite their limitations. The purpose of this article is to carry out an exploratory and confirmatory factor analysis on the proposed Keto-check (adherence’s KDT Brazilian questionnaire). Methods: there was a methodological study of a quantitative nature, complementary to the analysis realized previously, with a complimentary sample. The factorial analysis was performed with Factor software for parallel exploratory analysis, replicability, and confirmatory factor analysis. Graphical representation was created according to the number of factors resulting from the analysis. Results: 116 questionnaires were reached by complementary data collection (n = 69 actual data, complementing n = 47 previous data) through online forms. A polychoric correlation matrix suitability analysis resulted in a significant Bartlett statistic (p = 0.0001) and a Kaiser–Meyer–Olkin (KMO) test of 0.56. The parallel factorial analysis resulted in two factors, graphically represented as “efficacy” and “adherence”. A confirmatory factor analysis, considered fair, indicated an RMSEA of 0.063, NNFI resulted in 0.872, CFI in 0.926, and GFI in 0.897. Conclusion: this study confirms the validity of Keto-check through a more detailed analysis. Adherence is the key to improving the effectiveness of KDTs; therefore, improving knowledge about it can lead to a better healthcare approach.
Comparative Analysis of Campylobacter jejuni and C. coli Isolated from Livestock Animals to C. jejuni and C. coli Isolated from Surface Water Using DNA Sequencing and MALDI-TOF
Authors: Denis Martine , Rose Valérie , Nagard Bérengère , Thépault Amandine , Lucas Pierrick , Meunier Meagan , Benoit Fabienne , Wilhem Amandine , Gassilloud Benoit , Cauvin Elodie , Rincé Alain , Gourmelon Michèle
Published: August 2023

This study evaluated the contribution of cattle, sheep, poultry and pigs to the contamination of surface water from rivers by Campylobacter jejuni and C. coli using MLST, cgMLST and considered MALDI-TOF MS as an alternative technique. The 263 strains isolated from cattle (n = 61), sheep (n = 42), poultry (n = 65), pigs (n = 60) and surface water (n = 35) were distributed across 115 sequence types (STs), 49 for C. jejuni and 66 for C. coli. Considering MLST data, 14.2%, 11.4% and 2.8% of the surface water strains could be attributed to cattle, poultry and sheep, respectively, none to pigs, and 85.7% were non-attributed. Analysis of cg-MLST data with STRUCTURE indicated that C. jejuni strains from water were predominantly attributed to poultry (93.5%), weakly to sheep (<1%) and 6.3% non-attributed, and that conversely, C. coli strains from water were predominantly non-attributed (94.3%) and 5.7% attributed to poultry. Considering the protein profiles with a threshold of 94% and 97% of similarity, respectively, strains from surface water could be attributed to poultry (31.4% and 17.1%), and to cattle (17.1% and 5.7%); 54.1% and 77.1% were non-attributed. This study confirmed these livestock animals might contribute to the contamination of surface water, with a level of contribution depending on the typing technique and the method of analysis. MALDI-TOF could potentially be an alternative approach for source attribution.
Synergistic Effect of Ginsenoside Rh2 Combines with Ionizing Radiation on CT26/luc Colon Carcinoma Cells and Tumor-Bearing Animal Model
Authors: Lee Shan-Chih , Shen Chao-Yu , Wang Wei-Hsun , Lee Yen-Po , Liang Keng-Wei , Chou Ying-Hsiang , Tyan Yeu-Sheng , Hwang Jeng-Jong
Published: August 2023

Background: The local tumor control rate of colon cancer by radiotherapy is unsatisfactory due to recurrence and radioresistance. Ginsenoside Rh2 (Rh2), a panoxadiol saponin, possesses various antitumor effects. Methods: CT26/luc murine colon carcinoma cells and a CT26/luc tumor-bearing animal model were used to investigate the therapeutic efficacy of Rh2 combined with ionizing radiation and the underlying mechanisms. Results: Rh2 caused cell cycle arrest at the G1 phase in CT26/luc cells; however, when combined with ionizing radiation, the cells were arrested at the G2/M phase. Rh2 was found to suppress the activity of NF-κB induced by radiation by inhibiting the MAPK pathway, consequently affecting the expression of effector proteins. In an in vivo study, the combination treatment significantly increased tumor growth delay time and overall survival. Furthermore, the combination treatment significantly reduced NF-κB and NF-κB-related effector proteins, along with PD-1 receptor expression. Additionally, Rh2 administration led to increased levels of interleukin-12, -18, and interferon-γ in the mice’s sera. Importantly, biochemical analysis revealed no toxicities associated with Rh2 alone or combined with radiation. Conclusions: The combination of Rh2 with radiation may have potential as an alternative to improve the therapeutic efficacy of colorectal cancer.
QSAR and Chemical Read-Across Analysis of 370 Potential MGMT Inactivators to Identify the Structural Features Influencing Inactivation Potency
Authors: Sun Guohui , Bai Peiying , Fan Tengjiao , Zhao Lijiao , Zhong Rugang , McElhinney R. , McMurry T. , Donnelly Dorothy , McCormick Joan , Kelly Jane , Margison Geoffrey
Published: August 2023

O6-methylguanine-DNA methyltransferase (MGMT) constitutes an important cellular mechanism for repairing potentially cytotoxic DNA damage induced by guanine O6-alkylating agents and can render cells highly resistant to certain cancer chemotherapeutic drugs. A wide variety of potential MGMT inactivators have been designed and synthesized for the purpose of overcoming MGMT-mediated tumor resistance. We determined the inactivation potency of these compounds against human recombinant MGMT using [3H]-methylated-DNA-based MGMT inactivation assays and calculated the IC50 values. Using the results of 370 compounds, we performed quantitative structure–activity relationship (QSAR) modeling to identify the correlation between the chemical structure and MGMT-inactivating ability. Modeling was based on subdividing the sorted pIC50 values or on chemical structures or was random. A total of nine molecular descriptors were presented in the model equation, in which the mechanistic interpretation indicated that the status of nitrogen atoms, aliphatic primary amino groups, the presence of O-S at topological distance 3, the presence of Al-O-Ar/Ar-O-Ar/R..O..R/R-O-C=X, the ionization potential and hydrogen bond donors are the main factors responsible for inactivation ability. The final model was of high internal robustness, goodness of fit and prediction ability (R2pr = 0.7474, Q2Fn = 0.7375–0.7437, CCCpr = 0.8530). After the best splitting model was decided, we established the full model based on the entire set of compounds using the same descriptor combination. We also used a similarity-based read-across technique to further improve the external predictive ability of the model (R2pr = 0.7528, Q2Fn = 0.7387–0.7449, CCCpr = 0.8560). The prediction quality of 66 true external compounds was checked using the “Prediction Reliability Indicator” tool. In summary, we defined key structural features associated with MGMT inactivation, thus allowing for the design of MGMT inactivators that might improve clinical outcomes in cancer treatment.
Cytokinin Promotes Jasmonic Acid Accumulation in the Control of Maize Leaf Growth
Authors: Uyehara Aimee N. , Del Valle-Echevarria Angel R. , Hunter Charles T. , Nelissen Hilde , Demuynck Kirin , Cahill James F. , Gorman Zachary , Jander Georg , Muszynski Michael G.
Published: August 2023

Plant organ growth results from the combined activity of cell division and cell expansion. The co-ordination of these two processes depends on the interplay between multiple hormones that determine the final organ size. Using the semidominant Hairy Sheath Frayed1 (Hsf1) maize mutant that hypersignals the perception of cytokinin (CK), we show that CK can reduce leaf size and growth rate by decreasing cell division. Linked to CK hypersignaling, the Hsf1 mutant has an increased jasmonic acid (JA) content, a hormone that can inhibit cell division. The treatment of wild-type seedlings with exogenous JA reduces maize leaf size and growth rate, while JA-deficient maize mutants have increased leaf size and growth rate. Expression analysis revealed the increased transcript accumulation of several JA pathway genes in the Hsf1 leaf growth zone. A transient treatment of growing wild-type maize shoots with exogenous CK also induced the expression of JA biosynthetic genes, although this effect was blocked by the co-treatment with cycloheximide. Together, our results suggest that CK can promote JA accumulation, possibly through the increased expression of specific JA pathway genes.
Heavy Metal-Associated Isoprenylated Plant Proteins (HIPPs) at Plasmodesmata: Exploring the Link between Localization and Function
Authors: Barr Zoe Kathleen , Werner Tomáš , Tilsner Jens
Published: August 2023

Heavy metal-associated isoprenylated plant proteins (HIPPs) are a metallochaperone-like protein family comprising a combination of structural features unique to vascular plants. HIPPs possess both one or two heavy metal-binding domains and an isoprenylation site, facilitating a posttranslational protein lipid modification. Recent work has characterized individual HIPPs across numerous different species and provided evidence for varied functionalities. Interestingly, a significant number of HIPPs have been identified in proteomes of plasmodesmata (PD)—nanochannels mediating symplastic connectivity within plant tissues that play pivotal roles in intercellular communication during plant development as well as responses to biotic and abiotic stress. As characterized functions of many HIPPs are linked to stress responses, plasmodesmal HIPP proteins are potentially interesting candidate components of signaling events at or for the regulation of PD. Here, we review what is known about PD-localized HIPP proteins specifically, and how the structure and function of HIPPs more generally could link to known properties and regulation of PD.
Spectroscopic Analyses Highlight Plant Biostimulant Effects of Baker’s Yeast Vinasse and Selenium on Cabbage through Foliar Fertilization
Authors: Dima Ștefan-Ovidiu , Constantinescu-Aruxandei Diana , Tritean Naomi , Ghiurea Marius , Capră Luiza , Nicolae Cristian-Andi , Faraon Victor , Neamțu Constantin , Oancea Florin
Published: August 2023

The main aim of this study is to find relevant analytic fingerprints for plants’ structural characterization using spectroscopic techniques and thermogravimetric analyses (TGAs) as alternative methods, particularized on cabbage treated with selenium–baker’s yeast vinasse formulation (Se-VF) included in a foliar fertilizer formula. The hypothesis investigated is that Se-VF will induce significant structural changes compared with the control, analytically confirming the biofortification of selenium-enriched cabbage as a nutritive vegetable, and particularly the plant biostimulant effects of the applied Se-VF formulation on cabbage grown in the field. The TGA evidenced a structural transformation of the molecular building blocks in the treated cabbage leaves. The ash residues increased after treatment, suggesting increased mineral accumulation in leaves. X-ray diffraction (XRD) and Fourier-transform infrared spectroscopy (FTIR) evidenced a pectin–Iα-cellulose structure of cabbage that correlated with each other in terms of leaf crystallinity. FTIR analysis suggested the accumulation of unesterified pectin and possibly (seleno) glucosinolates and an increased network of hydrogen bonds. The treatment with Se-VF formulation induced a significant increase in the soluble fibers of the inner leaves, accompanied by a decrease in the insoluble fibers. The ratio of soluble/insoluble fibers correlated with the crystallinity determined by XRD and with the FTIR data. The employed analytic techniques can find practical applications as fast methods in studies of the effects of new agrotechnical practices, while in our particular case study, they revealed effects specific to plant biostimulants of the Se-VF formulation treatment: enhanced mineral utilization and improved quality traits.
Response of Aboveground Net Primary Production, Species and Phylogenetic Diversity to Warming and Increased Precipitation in an Alpine Meadow
Authors: Xiao Jianyu , Yu Chengqun , Fu Gang
Published: August 2023

The uncertain responses of aboveground net primary productivity (ANPP) and plant diversity to climate warming and increased precipitation will limit our ability to predict changes in vegetation productivity and plant diversity under future climate change and further constrain our ability to protect biodiversity and ecosystems. A long-term experiment was conducted to explore the responses of ANPP, plant species, phylogenetic α–diversity, and community composition to warming and increased precipitation in an alpine meadow of the Northern Tibet from 2014 to 2019. Coverage, height, and species name were obtained by conventional community investigation methods, and ANPP was obtained using observed height and coverage. Open–top chambers with two different heights were used to simulate low- and high-level climate warming. The low- and high-level increased precipitation treatments were achieved by using two kinds of surface area funnel devices. The high-level warming reduced sedge ANPP (ANPPsedge) by 62.81%, species richness (SR) by 21.05%, Shannon by 13.06%, and phylogenetic diversity (PD) by 14.48%, but increased forb ANPP (ANPPforb) by 56.65% and mean nearest taxon distance (MNTD) by 33.88%. Species richness, Shannon, and PD of the high-level warming were 19.64%, 9.67%, and 14.66% lower than those of the low-level warming, respectively. The high-level warming-induced dissimilarity magnitudes of species and phylogenetic composition were greater than those caused by low-level warming. The low- rather than high-level increased precipitation altered species and phylogenetic composition. There were significant inter-annual variations of ANPP, plant species, phylogenetic α–diversity and community composition. Therefore, climate warming and increased precipitation had non-linear effects on ANPP and plant diversity, which were due to non-linear changes in temperature, water availability, and/or soil nutrition caused by warming and increased precipitation. The inter-annual variations of ANPP and plant diversity were stronger than the effects of warming and especially increased precipitation on ANPP and plant diversity. In terms of plant diversity conservation and related policy formulation, we should pay more attention to regions with greater warming, at least for the northern Tibet grasslands. Besides paying attention to the responses of ANPP and plant diversity to climate change, the large inter-annual changes of ANPP and plant diversity should be given great attention because the large inter-annual variation indicates the low temporal stability of ANPP and plant diversity and thus produces great uncertainty for the development of animal husbandry.
A Comprehensive Review Uncovering the Challenges and Advancements in the In Vitro Propagation of Eucalyptus Plantations
Authors: Sharma Vikas , Ankita  , Karnwal Arun , Sharma Shivika , Kamal Barkha , Jadon Vikash S. , Gupta Sanjay , Sivanasen Iyyakkannu
Published: August 2023

The genus Eucalyptus is a globally captivated source of hardwood and is well known for its medicinal uses. The hybrid and wild species of Eucalyptus are widely used as exotic plantations due to their renowned potential of adapting to various systems and sites, and rapid large-scale propagation of genetically similar plantlets, which further leads to the extensive propagation of this species. Tissue culture plays a crucial role in the preservation, propagation, and genetic improvement of Eucalyptus species. Despite unquestionable progression in biotechnological and tissue culture approaches, the productivity of plantations is still limited, often due to the low efficiency of clonal propagation from cuttings. The obtained F1 hybrids yield high biomass and high-quality low-cost raw material for large-scale production; however, the development of hybrid, clonal multiplication, proliferation, and post-developmental studies are still major concerns. This riveting review describes the problems concerning the in vitro and clonal propagation of Eucalyptus plantation and recent advances in biotechnological and tissue culture practices for massive and rapid micropropagation of Eucalyptus, and it highlights the Eucalyptus germplasm preservation techniques.
Multivariate Genome-Wide Association Study of Concentrations of Seven Elements in Seeds Reveals Four New Loci in Russian Wheat Lines
Authors: Potapova Nadezhda A. , Timoshchuk Anna N. , Tiys Evgeny S. , Vinichenko Natalia A. , Leonova Irina N. , Salina Elena A. , Tsepilov Yakov A.
Published: August 2023

Wheat is a cereal grain that plays an important role in the world’s food industry. The identification of the loci that change the concentration of elements in wheat seeds is an important challenge nowadays especially for genomic selection and breeding of novel varieties. In this study, we performed a multivariate genome-wide association study (GWAS) of the seven traits—concentrations of Zn, Mg, Mn, Ca, Cu, Fe, and K in grain—of the Russian collection of common wheat Triticum aestivum (N = 149 measured in two years in two different fields). We replicated one known locus associated with the concentration of Zn (IAAV1375). We identified four novel loci—BS00022069_51 (associated with concentrations of Ca and K), RFL_Contig6053_3082 (associated with concentrations of Fe and Mn), Kukri_rep_c70864_329 (associated with concentrations of all elements), and IAAV8416 (associated with concentrations of Fe and Mn)—three of them were located near the genes TraesCS6A02G375400, TraesCS7A02G094800, and TraesCS5B02G325400. Our result adds novel information on the loci involved in wheat grain element contents and may be further used in genomic selection.
Characterization of the Virulence and Yield Impact of Fusarium Species on Canola (Brassica napus)
Authors: Yu Haitian , Chang Kan-Fa , Hwang Sheau-Fang , Strelkov Stephen E.
Published: August 2023

Multiple species of Fusarium can contribute to the development of root rot in canola (Brassica napus), making disease management difficult. We conducted field and greenhouse experiments to investigate the impacts of Fusarium avenaceum and Fusarium proliferatum, and the interaction between Fusarium oxysporum and F. proliferatum on root rot severity and canola yields. Inoculation with any of the three Fusarium spp. resulted in significant disease severity and reduced seedling emergence compared with non-inoculated controls, leading to yield reductions of up to 35%. Notably, there was a strong correlation (r = 0.93) between root rot severity at the seedling stage and at maturity. Regression analysis indicated a linear decline in seedling emergence with increasing disease severity. Furthermore, disease severity at maturity adversely affected the pod number per plant and the seed weight per plant, with both parameters ultimately approaching zero at a severity of 4.0 on a 0–4 scale. Co-inoculation with F. oxysporum and F. proliferatum induced more severe root rot than inoculation with each species on its own, suggesting synergistic interactions between these fungi. Knowledge of these interactions and the relative virulence of Fusarium spp. will contribute to the improved management of root rot in canola.
Comparative Analysis Reveals Different Evolutionary Fates and Biological Functions in Wheat Duplicated Genes (Triticum aestivum L.)
Authors: Cui Licao , Cheng Hao , Yang Zhe , Xia Chuan , Zhang Lichao , Kong Xiuying
Published: August 2023

Wheat (Triticum aestivum L.) is a staple food crop that provides 20% of total human calorie consumption. Gene duplication has been considered to play an important role in evolution by providing new genetic resources. However, the evolutionary fates and biological functions of the duplicated genes in wheat remain to be elucidated. In this study, the resulting data showed that the duplicated genes evolved faster with shorter gene lengths, higher codon usage bias, lower expression levels, and higher tissue specificity when compared to non-duplicated genes. Our analysis further revealed functions of duplicated genes in various biological processes with significant enrichment to environmental stresses. In addition, duplicated genes derived from dispersed, proximal, tandem, transposed, and whole-genome duplication differed in abundance, evolutionary rate, gene compactness, expression pattern, and genetic diversity. Tandem and proximal duplicates experienced stronger selective pressure and showed a more compact gene structure with diverse expression profiles than other duplication modes. Moreover, genes derived from different duplication modes showed an asymmetrical evolutionary pattern for wheat A, B, and D subgenomes. Several candidate duplication hotspots associated with wheat domestication or polyploidization were characterized as potential targets for wheat molecular breeding. Our comprehensive analysis revealed the evolutionary trajectory of duplicated genes and laid the foundation for future functional studies on wheat.
Different Ecological Niches of Poisonous Aristolochia clematitis in Central and Marginal Distribution Ranges—Another Contribution to a Better Understanding of Balkan Endemic Nephropathy
Authors: Brzić Ivan , Brener Magdalena , Čarni Andraž , Ćušterevska Renata , Čulig Borna , Dziuba Tetiana , Golub Valentin , Irimia Irina , Jelaković Bojan , Kavgacı Ali , Krstivojević Ćuk Mirjana , Krstonošić Daniel , Stupar Vladimir , Trobonjača Zlatko , Škvorc Željko
Published: August 2023

Aristolochia clematitis L. is a perennial herbaceous plant distributed throughout Europe, Asia Minor and Caucasus. It has been used as a medicinal plant since antiquity but not in recent times because it contains poisonous aristolochic acid, causing progressive kidney failure. The aim of this work was to study Aristolochia clematitis ecology on the basis of vegetation plots from the European Vegetation Archive, and to investigate the differentiation of its ecological niche using a co-occurrence-based measure of ecological specialization (ESI). The ecological niche was studied on three spatial scales: on the entire distribution area, its differentiation across 200 × 200 km grid cells and the differences between three central and three marginal regions. Our results suggest that Aristolochia clematitis has a very broad ecological niche occurring in a range of different habitats and climatic conditions, with a trend of a niche width decrease with the distance from the geographical center. The plant prefers more stable communities with less anthropogenic influence moving towards the margin of the distribution area. Specialization towards the marginal area is a result of evolutionary history, which refers to the recent anthropogenically induced spread from its original home range. A high incidence of Aristolochia clematitis in the vegetation of arable lands and market gardens as well as anthropogenic herbaceous vegetation in the distribution center corresponds to the geographical incidence of Balkan Endemic Nephropathy.
ROS Homeostasis and Antioxidants in the Halophytic Plants and Seeds
Authors: Pirasteh-Anosheh Hadi , Samadi Maryam , Kazemeini Seyed Abdolreza , Ozturk Munir , Ludwiczak Agnieszka , Piernik Agnieszka
Published: August 2023

Reactive oxygen species (ROS) are excited or partially reduced forms of atmospheric oxygen, which are continuously produced during aerobic metabolism like many physiochemical processes operating throughout seed life. Previously, it was believed that ROS are merely cytotoxic molecules, however, now it has been established that they perform numerous beneficial functions in plants including many critical roles in seed physiology. ROS facilitate seed germination via cell wall loosening, endosperm weakening, signaling, and decreasing abscisic acid (ABA) levels. Most of the existing knowledge about ROS homeostasis and functions is based on the seeds of common plants or model ones. There is little information about the role of ROS in the germination process of halophyte seeds. There are several definitions for halophytic plants, however, we believed “halophytes are plants that can grow in very saline environment and complete their life cycle by adopting various phenological, morphological and physiological mechanisms at canopy, plant, organelle and molecular scales”. Furthermore, mechanisms underlying ROS functions such as downstream targets, cross-talk with other molecules, and alternative routes are still obscure. The primary objective of this review is to decipher the mechanisms of ROS homeostasis in halophytes and dry seeds, as well as ROS flux in germinating seeds of halophytes.
Customizing Starch Properties: A Review of Starch Modifications and Their Applications
Authors: Compart Julia , Singh Aakanksha , Fettke Joerg , Apriyanto Ardha
Published: August 2023

Starch has been a convenient, economically important polymer with substantial applications in the food and processing industry. However, native starches present restricted applications, which hinder their industrial usage. Therefore, modification of starch is carried out to augment the positive characteristics and eliminate the limitations of the native starches. Modifications of starch can result in generating novel polymers with numerous functional and value-added properties that suit the needs of the industry. Here, we summarize the possible starch modifications in planta and outside the plant system (physical, chemical, and enzymatic) and their corresponding applications. In addition, this review will highlight the implications of each starch property adjustment.
Self-Assembled Chitosan/Dialdehyde Carboxymethyl Cellulose Hydrogels: Preparation and Application in the Removal of Complex Fungicide Formulations from Aqueous Media
Authors: Ghiorghita Claudiu-Augustin , Lazar Maria Marinela , Ghimici Luminita , Dinu Maria Valentina
Published: August 2023

Environmental contamination with pesticides occurs at a global scale as a result of prolonged usage and, therefore, their removal by low-cost and environmentally friendly systems is actively demanded. In this context, our study was directed to investigate the feasibility of using some self-assembled hydrogels, comprising chitosan (CS) and carboxymethylcellulose (CMC) or dialdehyde (DA)-CMC, for the removal of four complex fungicide formulations, namely Melody Compact (MC), Dithane (Dt), Curzate Manox (CM), and Cabrio®Top (CT). Porous CS/CMC and CS/DA-CMC hydrogels were prepared as discs by combining the semi-dissolution acidification sol-gel transition method with a freeze-drying approach. The obtained CS/CMC and CS/DA-CMC hydrogels were characterized by gel fraction yield, FTIR, SEM, swelling kinetics, and uniaxial compression tests. The batch-sorption studies indicated that the fungicides’ removal efficiency (RE%) by the CS/CMC hydrogels was increased significantly with increasing sorbent doses reaching 94%, 93%, 66% and 48% for MC, Dt, CM and CT, respectively, at 0.2 g sorbent dose. The RE values were higher for the hydrogels prepared using DA-CMC than for those prepared using non-oxidized CMC when initial fungicide concentrations of 300 mg/L or 400 mg/L were used. Our results indicated that CS/DA-CMC hydrogels could be promising biosorbents for mitigating pesticide contamination of aqueous environments.
Strong Bioactive Glass-Based Hybrid Implants with Good Biomineralization Activity Used to Reduce Formation Duration and Improve Biomechanics of Bone Regeneration
Authors: Chen Jing , Xing Yonglei , Bai Xiaozhuan , Xue Min , Shi Qi , Li Beibei
Published: August 2023

Developing bioactive implants with strong mechanical properties and biomineralization activity is critical in bone repair. In this work, modified cellulose nanofiber (mCNF)-reinforced bioactive glass (BG)-polycaprolactone (PCL) hybrids (mCNF–BP) with strong biomechanics and good apatite formation ability were reported. Incorporating mCNFs shortens the forming duration of the hybrid films and enhances the biomechanical performance and in vitro apatite-formation capability. The optimized biomechanical performance of the optimal hybrid materials is produced at a relatively high mCNF content (1.0 wt%), including a considerably higher modulus of elasticity (948.65 ± 74.06 MPa). In addition, the biomineralization activity of mCNF–BP hybrids is also tailored with the increase in the mCNF contents. The mCNF–BP with 1.5 wt% and 2.0 wt% mCNFs demonstrate the best biomineralization activity after immersing in simulated body fluid for 3 days. This study suggests that mCNFs are efficient bioactive additive to reinforce BG-based hybrids’ mechanical properties and biomineralization activity.
Study on the Effect of PTFE/Cu Composite Material Preparation Process on Penetration Performance
Authors: Yi Jianya , Hao Ruijie , Tang Xuezhi , Guan Siman , Wang Zhijun , Yin Jianping
Published: August 2023

The jet formed by the traditional metal liner has a slender shape. The diameter of the jet head is consistent with that of the tail, and the ductility is good. When it is used to penetrate the target, it has a good damage effect. The low-density jet formed by the PTFE/Cu liner, according to the different preparation processes and densities, has different degrees of radial expansion. This phenomenon may lead to the expansion of the jet head during the penetration process, resulting in a damage effect, which is different from the previous jet on the target. In this paper, the numerical simulation of PTFE/Cu liners with different preparation processes penetrating steel targets is carried out, and the effects of different preparation processes and liner density on the penetration characteristics of jets penetrating steel targets are compared and analyzed. The PTFE/Cu shaped charge liner was processed according to different preparation processes, and the jet penetration steel target experiment was carried out, so as to verify and analyze the numerical simulation results.
Preparation and Characterization of Silica-Based Ionogel Electrolytes and Their Application in Solid-State Lithium Batteries
Authors: Huang Ji-Cong , Chen-Yang Yui Whei , Hwang Jiunn-Jer
Published: August 2023

In this study, tetraethyl orthosilicate (TEOS) and methyltriethoxysilane (MTES) were used as precursors for silica, combined with the ionic liquid [BMIM-ClO4]. Lithium perchlorate was added as the lithium-ion source, and formic acid was employed as a catalyst to synthesize silica ionogel electrolytes via the sol–gel method. FT-IR and NMR identified the self-prepared ionic liquid [BMIM-ClO4], and its electrochemical window was determined using linear sweep voltammetry (LSV). The properties of the prepared silica ionogel electrolytes were further investigated through FT-IR, DSC, and 29Si MAS NMR measurements, followed by electrochemical property measurements, including conductivity, electrochemical impedance spectroscopy (EIS), LSV, and charge–discharge tests. The experimental results showed that adding methyltriethoxysilane (MTES) enhanced the mechanical strength of the silica ionogel electrolyte, simplifying its preparation process. The prepared silica ionogel electrolyte exhibited a high ionic conductivity of 1.65 × 10−3 S/cm. In the LSV test, the silica ionogel electrolyte demonstrated high electrochemical stability, withstanding over 5 V without oxidative decomposition. Finally, during the discharge–charge test, the second-cycle capacity reached 108.7 mAh/g at a discharge–charge rate of 0.2 C and a temperature of 55 °C.
CsPbBr3 Films Grown by Pulsed Laser Deposition: Impact of Oxygen on Morphological Evolution and Properties
Authors: Marra Marcella , Provenzano Chiara , Cesaria Maura , Cataldo Rosella , Monteduro Anna , Caricato Anna
Published: August 2023

Among all the inorganic perovskites, cesium lead bromide (CsPbBr3) has gained significant interest due to its stability and remarkable optoelectronic/photoluminescence properties. Because of the influence of deposition techniques, the experimental conditions that play a key role in each need to be addressed. In this context, we present CsPbBr3 films grown by pulsed laser deposition (PLD) and discuss the impact of oxygen stemming from their growth under a reduced vacuum, i.e., as the background atmosphere, rather than from post-growth exposure. In detail, stoichiometric mechano-chemically synthesized targets were prepared for deposition by nanosecond-PLD (λ = 248 nm, τ = 20 ns, room temperature, fluence of 1 J/cm2) to produce slightly Br-deficient CsPbBr3 films under different background pressure conditions (P0 = 10−4, 10−2 Pa). The characterization results suggest that the presence of oxygen during the deposition of CsPbBr3 can advantageously passivate bromide-vacancy states in all the film thicknesses and reduce losses from emissions. Overall, our findings shed light on the critical role of oxygen, under conditions in which we ruled out other effects related to air exposure, and provide valuable guidelines for potential applications in various optoelectronic devices.
Controlling the Physical Properties of Fe3O4-Immobilized Palladium Complexes towards Reusable Catalysts in the Methoxycarbonylation of 1-Hexene
Authors: Akiri Saphan O. , Schmitz Markus , Ojwach Stephen O.
Published: August 2023

This paper describes the use of immobilized palladium catalysts on Fe3O4 magnetic nanoparticles (MNPs) to afford magnetically separable catalysts in the methoxycarbonylation of 1-hexene. Immobilization of homogeneous complex [Pd(L1)Cl2] (Pd1), where L1 = N,N′E,N,N′E)-N,N′-(3-(3-(triethoxysilyl)propyl)pentane-2,4-diylidene)dianiline, on Fe3O4 MNPs at 100 °C and Pd loading of 10% (based on wt% of Pd1) afforded the corresponding complex [Pd1@Fe3O4] (Pd2) in good yields. The use of calcination temperatures of 150 °C and 200 °C produced compounds Pd3 and Pd4, respectively, while Pd metal loadings (based on wt% of Pd1) of 5% and 15% provided complexes Pd5 and Pd6, respectively. The immobilized compounds were analyzed using FT-IR spectroscopy, SEM-EDX, TEM, ICP-OES, and PXRD techniques. The surface areas and porosity of the materials were determined using nitrogen physisorption measurements and confirmed the formation of mesoporous materials, while SQUID measurements established Ms values in the range of 60.69 to 69.93 emu/g. The immobilized Pd(II) complexes catalyzed the methoxycarbonylation of 1-hexene, yielding mainly linear esters. The immobilized compounds could be recycled up to five times via magnetic separation without significant loss in catalytic activities.
Explainable Machine Learning-Based Method for Fracturing Prediction of Horizontal Shale Oil Wells
Authors: Liu Xinju , Zhang Tianyang , Yang Huanying , Qian Shihao , Dong Zhenzhen , Li Weirong , Zou Lu , Liu Zhaoxia , Wang Zhengbo , Zhang Tao , Lin Keze
Published: August 2023

Hydraulic fracturing is a crucial method in shale oil development, and predicting production after hydraulic fracturing is one of the challenges in shale oil development. Conventional methods for predicting production include analytical methods and numerical simulation methods, but these methods involve many parameters, have high uncertainty, and are time-consuming and costly. With the development of shale oil development, there are more and more sample data on the geological parameters, engineering parameters, and development parameters of shale oil hydraulic fracturing, making it possible to use machine learning methods to predict production after hydraulic fracturing. This article first analyzes the impact of different parameters on initial production and recoverable reserves based on field data from Chang-7 shale oil in the Ordos Basin of China. Then, using the Particle Swarm Optimization (PSO) algorithm and the Gradient Boosting Decision Tree (GBDT) algorithm, machine learning models for initial production and recoverable reserves are established. The Local Interpretable Model-Agnostic Explanations (LIME) and Shapley Additive exPlanations (SHAP) explanation methods are used to explain the models. The study found that initial production is highly correlated with parameters such as the number of fracturing stages and fracturing fluid volume, while recoverable reserves are significantly related to parameters such as well spacing, area, and reserver-controlled. The PSO-GBDT model established in this study has an accuracy of over 85% and can be used for production prediction and subsequent parameter optimization research. By comparing the LIME and SHAP local explanation methods, it is shown that different explanation methods can obtain reasonable and credible local explanation results. This article establishes a high-precision shale oil well production prediction model and two model interpretation methods, which could provide technical support for shale oil well production prediction and production analysis.
Islamic Liberation Theology and Decolonial Studies: The Case of Hindutva Extractivism
Authors: Kunnummal Ashraf
Published: August 2023

Decolonial studies define the coloniality of power as a complex assemblage of dominance and hegemony that emerged during the modern era or the era of colonialism, which stretches from the conquest of the Americas to the present. This article argues that, as part of the critical dialogue between decolonial studies and Islamic liberation theology, the latter should position itself in a decolonial political praxis around the preferential option for the poor that takes both a decolonial turn and a decolonial option seriously. There is a tendency to appropriate certain brands of decolonial studies to engage with forms of nationalism, such as Hindutva, to build a “decolonial option” in the global South by undermining the key insights of the “decolonial turn”. This article specifically engages with the claims of “decolonial Hindutva” to critique the nationalist appropriation in decolonial studies, thereby marking its divergence from decolonial Islamic liberation theology.