bluuebunny/crossref_metadata_2025 huggingface dataset:
Interleukin-10 Protection against Lipopolysaccharide-Induced Neuro-Inflammation and Neurotoxicity in Ventral Mesencephalic Cultures
Authors: Zhu Yan , Chen Xiao , Liu Zhan , Peng Yu-Ping , Qiu Yi-Hua
Published: December 2015

Interleukin (IL)-10, an anti-inflammatory cytokine, is expressed in the brain and can inhibit microglial activation. Herein, we utilized lipopolysaccharide (LPS)-induced inflammatory Parkinson’s disease (PD) cell model to determine whether microglia and astrocytes are necessary targets for IL-10 neuroprotection. Primary ventral mesencephalic (VM) cultures with different composition of neurons, microglia and astrocytes were prepared. The cells were exposed to IL-10 (15, 50 or 150 ng/mL) 1 h prior to LPS (50 ng/mL) treatment. LPS induced dopaminergic and non-dopaminergic neuronal loss in VM cultures, VM neuron-enriched cultures, and neuron-microglia co-cultures, but not in neuron-astrocyte co-cultures. IL-10 reduced LPS-induced neuronal loss particularly in single VM neuron cultures. Pro-inflammatory mediators (TNF-α, IL-1β, inducible nitric oxide synthase and cyclooxygenase-2) were upregulated in both neuron-microglia and neuron-astrocyte co-cultures by LPS. In contrast, neurotrophic factors (brain-derived neurotrophic factor, insulin-like growth factor-1 or glial cell-derived neurotrophic factor) were downregulated in neuron-microglia co-cultures, but upregulated in neuron-astrocyte co-cultures by LPS. IL-10 reduced both the increase in production of the pro-inflammatory mediators and the decrease in production of the neurotrophic factors induced by LPS. These results suggest that astrocytes can balance LPS neurotoxicity by releasing more neurotrophic factors and that IL-10 exerts neuroprotective property by an extensive action including direct on neurons and indirect via inhibiting microglial activation.
Targeting New Candidate Genes by Small Molecules Approaching Neurodegenerative Diseases
Authors: Fan Hueng-Chuen , Chi Ching-Shiang , Cheng Shin-Nan , Lee Hsiu-Fen , Tsai Jeng-Dau , Lin Shinn-Zong , Harn Horng-Jyh
Published: December 2015

Neurodegenerative diseases (NDs) are among the most feared of the disorders that afflict humankind for the lack of specific diagnostic tests and effective treatments. Understanding the molecular, cellular, biochemical changes of NDs may hold therapeutic promise against debilitating central nerve system (CNS) disorders. In the present review, we summarized the clinical presentations and biology backgrounds of NDs, including Parkinson’s disease (PD), Huntington’s disease (HD), and Alzheimer’s disease (AD) and explored the role of molecular mechanisms, including dys-regulation of epigenetic control mechanisms, Ataxia-telangiectasia-mutated protein kinase (ATM), and neuroinflammation in the pathogenesis of NDs. Targeting these mechanisms may hold therapeutic promise against these devastating diseases.
Resistance to Recombinant Human Erythropoietin Therapy in a Rat Model of Chronic Kidney Disease Associated Anemia
Authors: Garrido Patrícia , Ribeiro Sandra , Fernandes João , Vala Helena , Rocha-Pereira Petronila , Bronze-da-Rocha Elsa , Belo Luís , Costa Elísio , Santos-Silva Alice , Reis Flávio
Published: December 2015

This study aimed to elucidate the mechanisms explaining the persistence of anemia and resistance to recombinant human erythropoietin (rHuEPO) therapy in a rat model of chronic kidney disease (CKD)-associated anemia with formation of anti-rHuEPO antibodies. The remnant kidney rat model of CKD induced by 5/6 nephrectomy was used to test a long-term (nine weeks) high dose of rHuEPO (200 UI/kg bw/week) treatment. Hematological and biochemical parameters were evaluated as well as serum and tissue (kidney, liver and/or duodenum) protein and/or gene expression of mediators of erythropoiesis, iron metabolism and tissue hypoxia, inflammation, and fibrosis. Long-term treatment with a high rHuEPO dose is associated with development of resistance to therapy as a result of antibodies formation. In this condition, serum EPO levels are not deficient and iron availability is recovered by increased duodenal absorption. However, erythropoiesis is not stimulated, and the resistance to endogenous EPO effect and to rHuEPO therapy results from the development of a hypoxic, inflammatory and fibrotic milieu in the kidney tissue. This study provides new insights that could be important to ameliorate the current therapeutic strategies used to treat patients with CKD-associated anemia, in particular those that become resistant to rHuEPO therapy.
Adiponectin Induces Oncostatin M Expression in Osteoblasts through the PI3K/Akt Signaling Pathway
Authors: Su Chen-Ming , Lee Wei-Lin , Hsu Chin-Jung , Lu Ting-Ting , Wang Li-Hong , Xu Guo-Hong , Tang Chih-Hsin
Published: December 2015

Rheumatoid arthritis (RA), a common autoimmune disorder, is associated with a chronic inflammatory response and unbalanced bone metabolism within the articular microenvironment. Adiponectin, an adipokine secreted by adipocytes, is involved in multiple functions, including lipid metabolism and pro-inflammatory activity. However, the mechanism of adiponectin performance within arthritic inflammation remains unclear. In this study, we observed the effect of adiponectin on the expression of oncostatin M (OSM), a pro-inflammatory cytokine, in human osteoblastic cells. Pretreatment of cells with inhibitors of phosphatidylinositol 3-kinase (PI3K), Akt, and nuclear factor (NF)-κB reduced the adiponectin-induced OSM expression in osteoblasts. Stimulation of the cells with adiponectin increased phosphorylation of PI3K, Akt, and p65. Adiponectin treatment of osteoblasts increased OSM-luciferase activity and p65 binding to NF-κB on the OSM promoter. Our results indicate that adiponectin increased OSM expression via the PI3K, Akt, and NF-κB signaling pathways in osteoblastic cells, suggesting that adiponectin is a novel target for arthritis treatment.
RNA Binding Proteins in the miRNA Pathway
Authors: Connerty Patrick , Ahadi Alireza , Hutvagner Gyorgy
Published: December 2015

microRNAs (miRNAs) are short ~22 nucleotides (nt) ribonucleic acids which post-transcriptionally regulate gene expression. miRNAs are key regulators of all cellular processes, and the correct expression of miRNAs in an organism is crucial for proper development and cellular function. As a result, the miRNA biogenesis pathway is highly regulated. In this review, we outline the basic steps of miRNA biogenesis and miRNA mediated gene regulation focusing on the role of RNA binding proteins (RBPs). We also describe multiple mechanisms that regulate the canonical miRNA pathway, which depends on a wide range of RBPs. Moreover, we hypothesise that the interaction between miRNA regulation and RBPs is potentially more widespread based on the analysis of available high-throughput datasets.
An End-to-End DNA Taxonomy Methodology for Benthic Biodiversity Survey in the Clarion-Clipperton Zone, Central Pacific Abyss
Authors: Glover Adrian , Dahlgren Thomas , Wiklund Helena , Mohrbeck Inga , Smith Craig
Published: December 2015

Recent years have seen increased survey and sampling expeditions to the Clarion-Clipperton Zone (CCZ), central Pacific Ocean abyss, driven by commercial interests from contractors in the potential extraction of polymetallic nodules in the region. Part of the International Seabed Authority (ISA) regulatory requirements are that these contractors undertake environmental research expeditions to their CCZ exploration claims following guidelines approved by the ISA Legal and Technical Commission (ISA, 2010). Section 9 (e) of these guidelines instructs contractors to “…collect data on the sea floor communities specifically relating to megafauna, macrofauna, meiofauna, microfauna, nodule fauna and demersal scavengers”. There are a number of methodological challenges to this, including the water depth (4000–5000 m), extremely warm surface waters (~28 °C) compared to bottom water (~1.5 °C) and great distances to ports requiring a large and long seagoing expedition with only a limited number of scientists. Both scientists and regulators have recently realized that a major gap in our knowledge of the region is the fundamental taxonomy of the animals that live there; this is essential to inform our knowledge of the biogeography, natural history and ultimately our stewardship of the region. Recognising this, the ISA is currently sponsoring a series of taxonomic workshops on the CCZ fauna and to assist in this process we present here a series of methodological pipelines for DNA taxonomy (incorporating both molecular and morphological data) of the macrofauna and megafauna from the CCZ benthic habitat in the recent ABYSSLINE cruise program to the UK-1 exploration claim. A major problem on recent CCZ cruises has been the collection of high-quality samples suitable for both morphology and DNA taxonomy, coupled with a workflow that ensures these data are made available. The DNA sequencing techniques themselves are relatively standard, once good samples have been obtained. The key to quality taxonomic work on macrofaunal animals from the tropical abyss is careful extraction of the animals (in cold, filtered seawater), microscopic observation and preservation of live specimens, from a variety of sampling devices by experienced zoologists at sea. Essential to the long-term iterative building of taxonomic knowledge from the CCZ is an “end-to-end” methodology to the taxonomic science that takes into account careful sampling design, at-sea taxonomic identification and fixation, post-cruise laboratory work with both DNA and morphology and finally a careful sample and data management pipeline that results in specimens and data in accessible open museum collections and online repositories.
A Novel Design for Adjustable Stiffness Artificial Tendon for the Ankle Joint of a Bipedal Robot: Modeling & Simulation
Authors: Omer Aiman , Ghorbani Reza , Hashimoto Kenji , Lim Hun-ok , Takanishi Atsuo
Published: December 2015

Bipedal humanoid robots are expected to play a major role in the future. Performing bipedal locomotion requires high energy due to the high torque that needs to be provided by its legs’ joints. Taking the WABIAN-2R as an example, it uses harmonic gears in its joint to increase the torque. However, using such a mechanism increases the weight of the legs and therefore increases energy consumption. Therefore, the idea of developing a mechanism with adjustable stiffness to be connected to the leg joint is introduced here. The proposed mechanism would have the ability to provide passive and active motion. The mechanism would be attached to the ankle pitch joint as an artificial tendon. Using computer simulations, the dynamical performance of the mechanism is analytically evaluated.
On Diff(M)-Pseudo-Differential Operators and the Geometry of Non Linear Grassmannians
Authors: Magnot Jean-Pierre
Published: December 2015

We consider two principal bundles of embeddings with total space E m b ( M , N ) , with structure groups D i f f ( M ) and D i f f + ( M ) , where D i f f + ( M ) is the groups of orientation preserving diffeomorphisms. The aim of this paper is to describe the structure group of the tangent bundle of the two base manifolds: B ( M , N ) = E m b ( M , N ) / D i f f ( M ) and B + ( M , N ) = E m b ( M , N ) / D i f f + ( M ) from the various properties described, an adequate group seems to be a group of Fourier integral operators, which is carefully studied. It is the main goal of this paper to analyze this group, which is a central extension of a group of diffeomorphisms by a group of pseudo-differential operators which is slightly different from the one developped in the mathematical litterature e.g. by H. Omori and by T. Ratiu. We show that these groups are regular, and develop the necessary properties for applications to the geometry of B ( M , N ) . A case of particular interest is M = S 1 , where connected components of B + ( S 1 , N ) are deeply linked with homotopy classes of oriented knots. In this example, the structure group of the tangent space T B + ( S 1 , N ) is a subgroup of some group G L r e s , following the classical notations of (Pressley, A., 1988). These constructions suggest some approaches in the spirit of one of our previous works on Chern-Weil theory that could lead to knot invariants through a theory of Chern-Weil forms.
New Drugs from Marine Organisms in Alzheimer’s Disease
Authors: Russo Patrizia , Kisialiou Aliaksei , Lamonaca Palma , Moroni Rossana , Prinzi Giulia , Fini Massimo
Published: December 2015

Alzheimer’s disease (AD) is a multifactorial neurodegenerative disorder. Current approved drugs may only ameliorate symptoms in a restricted number of patients and for a restricted period of time. Currently, there is a translational research challenge into identifying the new effective drugs and their respective new therapeutic targets in AD and other neurodegenerative disorders. In this review, selected examples of marine-derived compounds in neurodegeneration, specifically in AD field are reported. The emphasis has been done on compounds and their possible relevant biological activities. The proposed drug development paradigm and current hypotheses should be accurately investigated in the future of AD therapy directions although taking into account successful examples of such approach represented by Cytarabine, Trabectedin, Eribulin and Ziconotide. We review a complexity of the translational research for such a development of new therapies for AD. Bryostatin is a prominent candidate for the therapy of AD and other types of dementia in humans.
Heterocycles 36. Single-Walled Carbon Nanotubes-Bound N,N-Diethyl Ethanolamine as Mild and Efficient Racemisation Agent in the Enzymatic DKR of 2-Arylthiazol-4-yl-alanines
Authors: Leonte Denisa , Bencze László , Paizs Csaba , Toşa Monica , Zaharia Valentin , Irimie Florin
Published: December 2015

In this paper we describe the chemoenzymatic synthesis of enantiopure l-2-arylthiazol-4-yl alanines starting from their racemic N-acetyl derivatives; by combining the lipase-catalysed dynamic kinetic resolution of oxazol-5(4H)-ones with a chemical and an enzymatic enantioselective hydrolytic step affording the desired products in good yields (74%–78%) and high enantiopurities (ee > 99%). The developed procedure exploits the utility of the single-walled carbon nanotubes-bound diethylaminoethanol as mild and efficient racemisation agent for the dynamic kinetic resolution of the corresponding oxazolones.
Strong and Nonspecific Synergistic Antibacterial Efficiency of Antibiotics Combined with Silver Nanoparticles at Very Low Concentrations Showing No Cytotoxic Effect
Authors: Panáček Aleš , Smékalová Monika , Kilianová Martina , Prucek Robert , Bogdanová Kateřina , Večeřová Renata , Kolář Milan , Havrdová Markéta , Płaza Grażyna , Chojniak Joanna , Zbořil Radek , Kvítek Libor
Published: December 2015

The resistance of bacteria towards traditional antibiotics currently constitutes one of the most important health care issues with serious negative impacts in practice. Overcoming this issue can be achieved by using antibacterial agents with multimode antibacterial action. Silver nano-particles (AgNPs) are one of the well-known antibacterial substances showing such multimode antibacterial action. Therefore, AgNPs are suitable candidates for use in combinations with traditional antibiotics in order to improve their antibacterial action. In this work, a systematic study quantifying the synergistic effects of antibiotics with different modes of action and different chemical structures in combination with AgNPs against Escherichia coli, Pseudomonas aeruginosa and Staphylococcus aureus was performed. Employing the microdilution method as more suitable and reliable than the disc diffusion method, strong synergistic effects were shown for all tested antibiotics combined with AgNPs at very low concentrations of both antibiotics and AgNPs. No trends were observed for synergistic effects of antibiotics with different modes of action and different chemical structures in combination with AgNPs, indicating non-specific synergistic effects. Moreover, a very low amount of silver is needed for effective antibacterial action of the antibiotics, which represents an important finding for potential medical applications due to the negligible cytotoxic effect of AgNPs towards human cells at these concentration levels.
Synthesis, Biological Evaluation and Molecular Docking Studies of 6-Aryl-2-Styrylquinazolin-4(3H)-Ones
Authors: Agbo Emmanuel , Makhafola Tshepiso , Choong Yee , Mphahlele Malose , Ramasami Ponnadurai
Published: December 2015

Suzuki-Miyaura cross-coupling of 6-bromo-2-styrylquinazolin-4(3H)-ones with arylboronic acids afforded a series of novel 6-aryl-2-styrylquinazolin-4(3H)-ones. These compounds were evaluated for potential anticancer properties against the human renal (TK-10), melanoma (UACC-62) and breast cancer (MCF-7) cell lines. Their antimicrobial properties were also evaluated against six Gram-positive and four Gram-negative bacteria, as well as two strains of fungi. Molecular docking studies (in silico) were conducted on compounds 5a, b, d and 6a, b, d–f to recognize the hypothetical binding motif of the title compounds within the active site of the dihydrofolate reductase and thymidylate synthase enzymes.
Mini Review of Phytochemicals and Plant Taxa with Activity as Microbial Biofilm and Quorum Sensing Inhibitors
Authors: Ta Chieu , Arnason John
Published: December 2015

Microbial biofilms readily form on many surfaces in nature including plant surfaces. In order to coordinate the formation of these biofilms, microorganisms use a cell-to-cell communication system called quorum sensing (QS). As formation of biofilms on vascular plants may not be advantageous to the hosts, plants have developed inhibitors to interfere with these processes. In this mini review, research papers published on plant-derived molecules that have microbial biofilm or quorum sensing inhibition are reviewed with the objectives of determining the biosynthetic classes of active compounds, their biological activity in assays, and their families of occurrence and range. The main findings are the identification of plant phenolics, including benzoates, phenyl propanoids, stilbenes, flavonoids, gallotannins, proanthocyanidins and coumarins as important inhibitors with both activities. Some terpenes including monoterpenes, sesquiterpenes, diterpenes and triterpenes also have anti-QS and anti-biofilm activities. Relatively few alkaloids were reported. Quinones and organosulfur compounds, especially from garlic, were also active. A common feature is the polar nature of these compounds. Phytochemicals with these activities are widespread in Angiosperms in temperate and tropical regions, but gymnosperms, bryophytes and pteridophytes were not represented.
Terpenoids from the Marine-Derived Fungus Aspergillus fumigatus YK-7
Authors: Wang Yu , Li Da-Hong , Li Zhan-Lin , Sun Yan-Jun , Hua Hui-Ming , Liu Tao , Bai Jiao
Published: December 2015

Two new β-bergamotane sesquiterpenoids, E-β-trans-5,8,11-trihydroxybergamot-9-ene (1) and β-trans-2β,5,15-trihydroxybergamot-10-ene (2), were isolated from the marine-derived fungus Aspergillus fumigatus YK-7, along with three known terpenoids 3–5. Their structures were determined by spectroscopic methods (1D and 2D NMR, HR-ESI-MS). Antiproliferative effects on human leukemic monocyte lymphoma U937 and human prostate cancer PC-3 cell lines were measured in vitro. Compound 4 exhibited potent activity against the U937 cell line with an IC50 value of 4.2 μM.
Peptide KSL-W-Loaded Mucoadhesive Liquid Crystalline Vehicle as an Alternative Treatment for Multispecies Oral Biofilm
Authors: Bernegossi Jéssica , Calixto Giovana , Sanches Paulo , Fontana Carla , Cilli Eduardo , Garrido Saulo , Chorilli Marlus
Published: December 2015

Decapeptide KSL-W shows antibacterial activities and can be used in the oral cavity, however, it is easily degraded in aqueous solution and eliminated. Therefore, we aimed to develop liquid crystalline systems (F1 and F2) for KSL-W buccal administration to treat multispecies oral biofilms. The systems were prepared with oleic acid, polyoxypropylene (5) polyoxyethylene (20) cetyl alcohol (PPG-5-CETETH-20), and a 1% poloxamer 407 dispersion as the oil phase (OP), surfactant (S), and aqueous phase (AP), respectively. We characterized them using polarized light microscopy (PLM), small-angle X-ray scattering (SAXS), rheology, and in vitro bioadhesion, and performed in vitro biological analysis. PLM showed isotropy (F1) or anisotropy with lamellar mesophases (F2), confirmed by peak ratio quantification using SAXS. Rheological tests demonstrated that F1 exhibited Newtonian behavior but not F2, which showed a structured AP concentration-dependent system. Bioadhesion studies revealed an AP concentration-dependent increase in the system’s bioadhesiveness (F2 = 15.50 ± 1.00 mN·s) to bovine teeth blocks. Antimicrobial testing revealed 100% inhibition of multispecies oral biofilm growth after KSL-W administration, which was incorporated in the F2 aqueous phase at a concentration of 1 mg/mL. Our results suggest that this system could serve as a potential vehicle for buccal administration of antibiofilm peptides.
Application of Ultra-High-Performance Liquid Chromatography Coupled with LTQ-Orbitrap Mass Spectrometry for the Qualitative and Quantitative Analysis of Polygonum multiflorum Thumb. and Its Processed Products
Authors: Wang Teng-Hua , Zhang Jing , Qiu Xiao-Hui , Bai Jun-Qi , Gao You-Heng , Xu Wen
Published: December 2015

In order to quickly and simultaneously obtain the chemical profiles and control the quality of the root of Polygonum multiflorum Thumb. and its processed form, a rapid qualitative and quantitative method, using ultra-high-performance liquid chromatography coupled with electrospray ionization-linear ion trap-Orbitrap hybrid mass spectrometry (UHPLC-LTQ-Orbitrap MSn) has been developed. The analysis was performed within 10 min on an AcQuity UPLC™ BEH C18 column with a gradient elution of 0.1% formic acid-acetonitrile at flow rate of 400 μL/min. According to the fragmentation mechanism and high resolution MSn data, a diagnostic ion searching strategy was used for rapid and tentative identification of main phenolic components and 23 compounds were simultaneously identified or tentatively characterized. The difference in chemical profiles between P. multiflorum and its processed preparation were observed by comparing the ions abundances of main constituents in the MS spectra and significant changes of eight metabolite biomarkers were detected in the P. multiflorum samples and their preparations. In addition, four of the representative phenols, namely gallic acid, trans-2,3,5,4′-tetra-hydroxystilbene-2-O-β-d-glucopyranoside, emodin and emodin-8-O-β-d-glucopyranoside were quantified by the validated UHPLC-MS/MS method. These phenols are considered to be major bioactive constituents in P. multiflorum, and are generally regarded as the index for quality assessment of this herb. The method was successfully used to quantify 10 batches of P. multiflorum and 10 batches of processed P. multiflorum. The results demonstrated that the method is simple, rapid, and suitable for the discrimination and quality control of this traditional Chinese herb.
Site-Selective Ribosylation of Fluorescent Nucleobase Analogs Using Purine-Nucleoside Phosphorylase as a Catalyst: Effects of Point Mutations
Authors: Stachelska-Wierzchowska Alicja , Wierzchowski Jacek , Bzowska Agnieszka , Wielgus-Kutrowska Beata
Published: December 2015

Enzymatic ribosylation of fluorescent 8-azapurine derivatives, like 8-azaguanine and 2,6-diamino-8-azapurine, with purine-nucleoside phosphorylase (PNP) as a catalyst, leads to N9, N8, and N7-ribosides. The final proportion of the products may be modulated by point mutations in the enzyme active site. As an example, ribosylation of the latter substrate by wild-type calf PNP gives N7- and N8-ribosides, while the N243D mutant directs the ribosyl substitution at N9- and N7-positions. The same mutant allows synthesis of the fluorescent N7-β-d-ribosyl-8-azaguanine. The mutated form of the E. coli PNP, D204N, can be utilized to obtain non-typical ribosides of 8-azaadenine and 2,6-diamino-8-azapurine as well. The N7- and N8-ribosides of the 8-azapurines can be analytically useful, as illustrated by N7-β-d-ribosyl-2,6-diamino-8-azapurine, which is a good fluorogenic substrate for mammalian forms of PNP, including human blood PNP, while the N8-riboside is selective to the E. coli enzyme.
Synthesis and Application of Amine Functionalized Iron Oxide Nanoparticles on Menaquinone-7 Fermentation: A Step towards Process Intensification
Authors: Ebrahiminezhad Alireza , Varma Vikas , Yang Shuyi , Ghasemi Younes , Berenjian Aydin
Published: December 2015

Industrial production of menaquione-7 by Bacillus subtilis natto is associated with major drawbacks. To address the current challenges in menaquione-7 fermentation, studying the effect of magnetic nanoparticles on the bacterial cells can open up a new domain for intensified menqainone-7 process. This article introduces the new concept of production and application of l-lysine coated iron oxide nanoparticles (l-Lys@IONs) as a novel tool for menaquinone-7 biosynthesis. l-Lys@IONs with the average size of 7 nm were successfully fabricated and were examined in a fermentation process of l-Lys@IONs decorated Bacillus subtilis natto. Based on the results, higher menaquinone-7 specific yield was observed for l-Lys@IONs decorated bacterial cells as compared to untreated bacteria. In addition, more than 92% removal efficacy was achieved by using integrated magnetic separation process. The present study demonstrates that l-Lys@IONs can be successfully applied during a fermentation of menaquinone-7 without any negative consequences on the culture conditions. This study provides a novel biotechnological application for IONs and their future role in bioprocess intensification.
An Automated Approach for Mapping Persistent Ice and Snow Cover over High Latitude Regions
Authors: Selkowitz David , Forster Richard
Published: December 2015

We developed an automated approach for mapping persistent ice and snow cover (glaciers and perennial snowfields) from Landsat TM and ETM+ data across a variety of topography, glacier types, and climatic conditions at high latitudes (above ~65°N). Our approach exploits all available Landsat scenes acquired during the late summer (1 August–15 September) over a multi-year period and employs an automated cloud masking algorithm optimized for snow and ice covered mountainous environments. Pixels from individual Landsat scenes were classified as snow/ice covered or snow/ice free based on the Normalized Difference Snow Index (NDSI), and pixels consistently identified as snow/ice covered over a five-year period were classified as persistent ice and snow cover. The same NDSI and ratio of snow/ice-covered days to total days thresholds applied consistently across eight study regions resulted in persistent ice and snow cover maps that agreed closely in most areas with glacier area mapped for the Randolph Glacier Inventory (RGI), with a mean accuracy (agreement with the RGI) of 0.96, a mean precision (user’s accuracy of the snow/ice cover class) of 0.92, a mean recall (producer’s accuracy of the snow/ice cover class) of 0.86, and a mean F-score (a measure that considers both precision and recall) of 0.88. We also compared results from our approach to glacier area mapped from high spatial resolution imagery at four study regions and found similar results. Accuracy was lowest in regions with substantial areas of debris-covered glacier ice, suggesting that manual editing would still be required in these regions to achieve reasonable results. The similarity of our results to those from the RGI as well as glacier area mapped from high spatial resolution imagery suggests it should be possible to apply this approach across large regions to produce updated 30-m resolution maps of persistent ice and snow cover. In the short term, automated PISC maps can be used to rapidly identify areas where substantial changes in glacier area have occurred since the most recent conventional glacier inventories, highlighting areas where updated inventories are most urgently needed. From a longer term perspective, the automated production of PISC maps represents an important step toward fully automated glacier extent monitoring using Landsat or similar sensors.
Sensor Fusion Based Model for Collision Free Mobile Robot Navigation
Authors: Almasri Marwah , Elleithy Khaled , Alajlan Abrar
Published: December 2015

Autonomous mobile robots have become a very popular and interesting topic in the last decade. Each of them are equipped with various types of sensors such as GPS, camera, infrared and ultrasonic sensors. These sensors are used to observe the surrounding environment. However, these sensors sometimes fail and have inaccurate readings. Therefore, the integration of sensor fusion will help to solve this dilemma and enhance the overall performance. This paper presents a collision free mobile robot navigation based on the fuzzy logic fusion model. Eight distance sensors and a range finder camera are used for the collision avoidance approach where three ground sensors are used for the line or path following approach. The fuzzy system is composed of nine inputs which are the eight distance sensors and the camera, two outputs which are the left and right velocities of the mobile robot’s wheels, and 24 fuzzy rules for the robot’s movement. Webots Pro simulator is used for modeling the environment and the robot. The proposed methodology, which includes the collision avoidance based on fuzzy logic fusion model and line following robot, has been implemented and tested through simulation and real time experiments. Various scenarios have been presented with static and dynamic obstacles using one robot and two robots while avoiding obstacles in different shapes and sizes.
A Multi-Hop Energy Neutral Clustering Algorithm for Maximizing Network Information Gathering in Energy Harvesting Wireless Sensor Networks
Authors: Yang Liu , Lu Yinzhi , Zhong Yuanchang , Wu Xuegang , Yang Simon
Published: December 2015

Energy resource limitation is a severe problem in traditional wireless sensor networks (WSNs) because it restricts the lifetime of network. Recently, the emergence of energy harvesting techniques has brought with them the expectation to overcome this problem. In particular, it is possible for a sensor node with energy harvesting abilities to work perpetually in an Energy Neutral state. In this paper, a Multi-hop Energy Neutral Clustering (MENC) algorithm is proposed to construct the optimal multi-hop clustering architecture in energy harvesting WSNs, with the goal of achieving perpetual network operation. All cluster heads (CHs) in the network act as routers to transmit data to base station (BS) cooperatively by a multi-hop communication method. In addition, by analyzing the energy consumption of intra- and inter-cluster data transmission, we give the energy neutrality constraints. Under these constraints, every sensor node can work in an energy neutral state, which in turn provides perpetual network operation. Furthermore, the minimum network data transmission cycle is mathematically derived using convex optimization techniques while the network information gathering is maximal. Simulation results show that our protocol can achieve perpetual network operation, so that the consistent data delivery is guaranteed. In addition, substantial improvements on the performance of network throughput are also achieved as compared to the famous traditional clustering protocol LEACH and recent energy harvesting aware clustering protocols.
Mission Planning and Decision Support for Underwater Glider Networks: A Sampling on-Demand Approach
Authors: Ferri Gabriele , Cococcioni Marco , Alvarez Alberto
Published: December 2015

This paper describes an optimal sampling approach to support glider fleet operators and marine scientists during the complex task of planning the missions of fleets of underwater gliders. Optimal sampling, which has gained considerable attention in the last decade, consists in planning the paths of gliders to minimize a specific criterion pertinent to the phenomenon under investigation. Different criteria (e.g., A, G, or E optimality), used in geosciences to obtain an optimum design, lead to different sampling strategies. In particular, the A criterion produces paths for the gliders that minimize the overall level of uncertainty over the area of interest. However, there are commonly operative situations in which the marine scientists may prefer not to minimize the overall uncertainty of a certain area, but instead they may be interested in achieving an acceptable uncertainty sufficient for the scientific or operational needs of the mission. We propose and discuss here an approach named sampling on-demand that explicitly addresses this need. In our approach the user provides an objective map, setting both the amount and the geographic distribution of the uncertainty to be achieved after assimilating the information gathered by the fleet. A novel optimality criterion, called A η , is proposed and the resulting minimization problem is solved by using a Simulated Annealing based optimizer that takes into account the constraints imposed by the glider navigation features, the desired geometry of the paths and the problems of reachability caused by ocean currents. This planning strategy has been implemented in a Matlab toolbox called SoDDS (Sampling on-Demand and Decision Support). The tool is able to automatically download the ocean fields data from MyOcean repository and also provides graphical user interfaces to ease the input process of mission parameters and targets. The results obtained by running SoDDS on three different scenarios are provided and show that SoDDS, which is currently used at NATO STO Centre for Maritime Research and Experimentation (CMRE), can represent a step forward towards a systematic mission planning of glider fleets, dramatically reducing the efforts of glider operators.
A Life Cycle Assessment of Silica Sand: Comparing the Beneficiation Processes
Authors: Grbeš Anamarija
Published: December 2015

Silica sand or quartz sand is a mineral resource with a wide variety of application; glass industry, construction and foundry are the most common examples thereof. The Republic of Croatia has reserves of 40 million tons of silica sand and a long tradition of surface mining and processing. The average annual production of raw silica sand in Croatia in the period from 2006 to 2011 amounted to 150 thousand tons. This paper presents cradle to gate LCA results of three different types of beneficiation techniques: electrostatic separation; flotation; gravity concentration. The aim of this research is to identify and quantify the environmental impacts of the silica sand production, to learn the range of the impacts for different processing methods, as well as to identify the major contributors and focus for further process design development.
Quantifying Urban Fragmentation under Economic Transition in Shanghai City, China
Authors: You Heyuan
Published: December 2015

Urban fragmentation affects sustainability through multiple impacts on economic, social, and environmental cost. Characterizing the dynamics of urban fragmentation in relation to economic transition should provide implications for sustainability. However, rather few efforts have been made in this issue. Using the case of Shanghai (China), this paper quantifies urban fragmentation in relation to economic transition. In particular, urban fragmentation is quantified by a time-series of remotely sensed images and a set of landscape metrics; and economic transition is described by a set of indicators from three aspects (globalization, decentralization, and marketization). Results show that urban fragmentation presents an increasing linear trend. Multivariate regression identifies positive linear correlation between urban fragmentation and economic transition. More specifically, the relative influence is different for the three components of economic transition. The relative influence of decentralization is stronger than that of globalization and marketization. The joint influences of decentralization and globalization are the strongest for urban fragmentation. The demonstrated methodology can be applicable to other places after making suitable adjustment of the economic transition indicators and fragmentation metrics.
Bright Single-Photon Sources Based on Anti-Reflection Coated Deterministic Quantum Dot Microlenses
Authors: Schnauber Peter , Thoma Alexander , Heine Christoph , Schlehahn Alexander , Gantz Liron , Gschrey Manuel , Schmidt Ronny , Hopfmann Caspar , Wohlfeil Benjamin , Schulze Jan-Hindrick , Strittmatter André , Heindel Tobias , Rodt Sven , Woggon Ulrike , Gershoni David , Reitzenstein Stephan
Published: December 2015

We report on enhancing the photon-extraction efficiency (PEE) of deterministic quantum dot (QD) microlenses via anti-reflection (AR) coating. The AR-coating deposited on top of the curved microlens surface is composed of a thin layer of Ta2O5, and is found to effectively reduce back-reflection of light at the semiconductor-vacuum interface. A statistical analysis of spectroscopic data reveals, that the AR-coating improves the light out-coupling of respective microlenses by a factor of 1.57 ± 0.71, in quantitative agreement with numerical calculations. Taking the enhancement factor into account, we predict improved out-coupling of light with a PEE of up to 50%. The quantum nature of emission from QDs integrated into AR-coated microlenses is demonstrated via photon auto-correlation measurements revealing strong suppression of two-photon emission events with g(2)(0) = 0.05 ± 0.02. As such, these bright non-classical light sources are highly attractive with respect to applications in the field of quantum cryptography.
Identification and Characterization of Carboxylesterases from Brachypodium distachyon Deacetylating Trichothecene Mycotoxins
Authors: Schmeitzl Clemens , Varga Elisabeth , Warth Benedikt , Kugler Karl , Malachová Alexandra , Michlmayr Herbert , Wiesenberger Gerlinde , Mayer Klaus , Mewes Hans-Werner , Krska Rudolf , Schuhmacher Rainer , Berthiller Franz , Adam Gerhard
Published: December 2015

Increasing frequencies of 3-acetyl-deoxynivalenol (3-ADON)-producing strains of Fusarium graminearum (3-ADON chemotype) have been reported in North America and Asia. 3-ADON is nearly nontoxic at the level of the ribosomal target and has to be deacetylated to cause inhibition of protein biosynthesis. Plant cells can efficiently remove the acetyl groups of 3-ADON, but the underlying genes are yet unknown. We therefore performed a study of the family of candidate carboxylesterases (CXE) genes of the monocot model plant Brachypodium distachyon. We report the identification and characterization of the first plant enzymes responsible for deacetylation of trichothecene toxins. The product of the BdCXE29 gene efficiently deacetylates T-2 toxin to HT-2 toxin, NX-2 to NX-3, both 3-ADON and 15-acetyl-deoxynivalenol (15-ADON) into deoxynivalenol and, to a lesser degree, also fusarenon X into nivalenol. The BdCXE52 esterase showed lower activity than BdCXE29 when expressed in yeast and accepts 3-ADON, NX-2, 15-ADON and, to a limited extent, fusarenon X as substrates. Expression of these Brachypodium genes in yeast increases the toxicity of 3-ADON, suggesting that highly similar genes existing in crop plants may act as susceptibility factors in Fusarium head blight disease.
Quercetin as an Antiviral Agent Inhibits Influenza A Virus (IAV) Entry
Authors: Wu Wenjiao , Li Richan , Li Xianglian , He Jian , Jiang Shibo , Liu Shuwen , Yang Jie
Published: December 2015

Influenza A viruses (IAVs) cause seasonal pandemics and epidemics with high morbidity and mortality, which calls for effective anti-IAV agents. The glycoprotein hemagglutinin of influenza virus plays a crucial role in the initial stage of virus infection, making it a potential target for anti-influenza therapeutics development. Here we found that quercetin inhibited influenza infection with a wide spectrum of strains, including A/Puerto Rico/8/34 (H1N1), A/FM-1/47/1 (H1N1), and A/Aichi/2/68 (H3N2) with half maximal inhibitory concentration (IC50) of 7.756 ± 1.097, 6.225 ± 0.467, and 2.738 ± 1.931 μg/mL, respectively. Mechanism studies identified that quercetin showed interaction with the HA2 subunit. Moreover, quercetin could inhibit the entry of the H5N1 virus using the pseudovirus-based drug screening system. This study indicates that quercetin showing inhibitory activity in the early stage of influenza infection provides a future therapeutic option to develop effective, safe and affordable natural products for the treatment and prophylaxis of IAV infections.
Multi-Variate Analyses of Flood Loss in Can Tho City, Mekong Delta
Authors: Chinh Do , Gain Animesh , Dung Nguyen , Haase Dagmar , Kreibich Heidi
Published: December 2015

Floods in the Mekong delta are recurring events and cause substantial losses to the economy. Sea level rise and increasing precipitation during the wet season result in more frequent floods. For effective flood risk management, reliable losses and risk analyses are necessary. However, knowledge about damaging processes and robust assessments of flood losses in the Mekong delta are scarce. In order to fill this gap, we identify and quantify the effects of the most important variables determining flood losses in Can Tho city through multi-variate statistical analyses. Our analysis is limited to the losses of residential buildings and contents. Results reveal that under the specific flooding characteristics in the Mekong delta with relatively well-adapted households, long inundation durations and shallow water depths, inundation duration is more important than water depth for the resulting loss. However, also building and content values, floor space of buildings and building quality are important loss-determining variables. Human activities like undertaking precautionary measures also influence flood losses. The results are important for improving flood loss modelling and, consequently, flood risk assessments in the Mekong delta.
Identifying the Vulnerabilities of Working Coasts Supporting Critical Energy Infrastructure
Authors: Dismukes David , Narra Siddhartha
Published: December 2015

The U.S. Gulf of Mexico (GOM) is an excellent example of a working coast that supports a considerable degree of critical energy infrastructure across several sectors (crude oil, natural gas, electric power, petrochemicals) and functionalities (production, processing/refining, transmission, distribution). The coastal communities of the GOM form a highly productive and complicated human, physical, and natural environment that interacts in ways that are unlike anywhere else around the globe. This paper formulates a Coastal Infrastructure Vulnerability Index (CIVI) that characterizes interactions between energy assets and the physical and human aspects of GOM communities to identify and prioritize, using a multi-dimensional index, coastal vulnerability. The CIVI leads to results that are significantly different than traditional methods and serves as an alternative, and potentially more useful tool for coastal planning and policy, particularly in those areas characterized by very high infrastructure concentrations.
Comparison of Four Different Energy Balance Models for Estimating Evapotranspiration in the Midwestern United States
Authors: Singh Ramesh , Senay Gabriel
Published: December 2015

The development of different energy balance models has allowed users to choose a model based on its suitability in a region. We compared four commonly used models—Mapping EvapoTranspiration at high Resolution with Internalized Calibration (METRIC) model, Surface Energy Balance Algorithm for Land (SEBAL) model, Surface Energy Balance System (SEBS) model, and the Operational Simplified Surface Energy Balance (SSEBop) model—using Landsat images to estimate evapotranspiration (ET) in the Midwestern United States. Our models validation using three AmeriFlux cropland sites at Mead, Nebraska, showed that all four models captured the spatial and temporal variation of ET reasonably well with an R2 of more than 0.81. Both the METRIC and SSEBop models showed a low root mean square error (<0.93 mm·day−1) and a high Nash–Sutcliffe coefficient of efficiency (>0.80), whereas the SEBAL and SEBS models resulted in relatively higher bias for estimating daily ET. The empirical equation of daily average net radiation used in the SEBAL and SEBS models for upscaling instantaneous ET to daily ET resulted in underestimation of daily ET, particularly when the daily average net radiation was more than 100 W·m−2. Estimated daily ET for both cropland and grassland had some degree of linearity with METRIC, SEBAL, and SEBS, but linearity was stronger for evaporative fraction. Thus, these ET models have strengths and limitations for applications in water resource management.
Evaluating Land Subsidence Rates and Their Implications for Land Loss in the Lower Mississippi River Basin
Authors: Zou Lei , Kent Joshua , Lam Nina , Cai Heng , Qiang Yi , Li Kenan
Published: December 2015

High subsidence rates, along with eustatic sea-level change, sediment accumulation and shoreline erosion have led to widespread land loss and the deterioration of ecosystem health around the Lower Mississippi River Basin (LMRB). A proper evaluation of the spatial pattern of subsidence rates in the LMRB is the key to understanding the mechanisms of the submergence, estimating its potential impacts on land loss and the long-term sustainability of the region. Based on the subsidence rate data derived from benchmark surveys from 1922 to 1995, this paper constructed a subsidence rate surface for the region through the empirical Bayesian kriging (EBK) interpolation method. The results show that the subsidence rates in the region ranged from 1.7 to 29 mm/year, with an average rate of 9.4 mm/year. Subsidence rates increased from north to south as the outcome of both regional geophysical conditions and anthropogenic activities. Four areas of high subsidence rates were found, and they are located in Orleans, Jefferson, Terrebonne and Plaquemines parishes. A projection of future landscape loss using the interpolated subsidence rates reveals that areas below zero elevation in the LMRB will increase from 3.86% in 2004 to 19.79% in 2030 and 30.88% in 2050. This translates to a growing increase of areas that are vulnerable to land loss from 44.3 km2/year to 240.7 km2/year from 2011 to 2050. Under the same scenario, Lafourche, Plaquemines and Terrebonne parishes will experience serious loss of wetlands, whereas Orleans and Jefferson parishes will lose significant developed land, and Lafourche parish will endure severe loss of agriculture land.
Pyridylidene ligand facilitates gold-catalyzed oxidative C–H arylation of heterocycles
Authors: Hata Kazuhiro , Ito Hideto , Segawa Yasutomo , Itami Kenichiro
Published: December 2015

Triaryl-2-pyridylidene effectively facilitates the gold-catalyzed oxidative C–H arylation of heteroarenes with arylsilanes as a unique electron-donating ligand on gold. The employment of the 2-pyridylidene ligand, which is one of the strongest electron-donating N-heterocyclic carbenes, resulted in the rate acceleration of the C–H arylation reaction of heterocycles over conventional ligands such as triphenylphosphine and a classical N-heterocyclic carbene. In situ observation and isolation of the 2-pyridylidene-gold(III) species, as well as a DFT study, indicated unusual stability of gold(III) species stabilized by strong electron donation from the 2-pyridylidene ligand. Thus, the gold(I)-to-gold(III) oxidation process is thought to be facilitated by the highly electron-donating 2-pyridylidene ligand.