bluuebunny/crossref_metadata_2025 huggingface dataset:
Projecting climate change impacts on species distributions in megadiverse South African Cape and Southwest Australian Floristic Regions: Opportunities and challenges
Authors: YATES COLIN J. , ELITH JANE , LATIMER ANDREW M. , LE MAITRE DAVID , MIDGLEY GUY F. , SCHURR FRANK M. , WEST ADAM G.
Published: November 2009

Increasing evidence shows that anthropogenic climate change is affecting biodiversity. Reducing or stabilizing greenhouse gas emissions may slow global warming, but past emissions will continue to contribute to further unavoidable warming for more than a century. With obvious signs of difficulties in achieving effective mitigation worldwide in the short term at least, sound scientific predictions of future impacts on biodiversity will be required to guide conservation planning and adaptation. This is especially true in Mediterranean type ecosystems that are projected to be among the most significantly affected by anthropogenic climate change, and show the highest levels of confidence in rainfall projections. Multiple methods are available for projecting the consequences of climate change on the main unit of interest – the species – with each method having strengths and weaknesses. Species distribution models (SDMs) are increasingly applied for forecasting climate change impacts on species geographic ranges. Aggregation of models for different species allows inferences of impacts on biodiversity, though excluding the effects of species interactions. The modelling approach is based on several further assumptions and projections and should be treated cautiously. In the absence of comparable approaches that address large numbers of species, SDMs remain valuable in estimating the vulnerability of species. In this review we discuss the application of SDMs in predicting the impacts of climate change on biodiversity with special reference to the species‐rich South West Australian Floristic Region and South African Cape Floristic Region. We discuss the advantages and challenges in applying SDMs in biodiverse regions with high levels of endemicity, and how a similar biogeographical history in both regions may assist us in understanding their vulnerability to climate change. We suggest how the process of predicting the impacts of climate change on biodiversity with SDMs can be improved and emphasize the role of field monitoring and experiments in validating the predictions of SDMs.
Managing biodiversity data within the context of climate change: towards best practice
Authors: GIOIA PAUL
Published: November 2009

Decision makers, planners and researchers have identified the need to assess the effects of climate change on biodiversity, resulting in extensive research across a number of fields. The availability of comprehensive, accurate and relevant data is central to undertaking effective research. However, the quality and availability of biodiversity information is substantially determined by current and historical data collection strategies. If researchers and planners are to make effective use of existing and future investments in biodiversity information, a strategic approach should be taken in identifying and implementing best practice information management. This paper discusses ways to improve institutional support for information management and increase the availability of quality information. The paper reviews the most common areas of climate change and biodiversity research, and identifies best practices in information management, focusing on data used within biodiversity and climate change analyses.
Monitoring the impact of climate change on biodiversity: The challenge of megadiverse Mediterranean climate ecosystems
Authors: ABBOTT IAN , LE MAITRE DAVID
Published: November 2009

The Mediterranean climate regions of Western Australia and South Africa are recognized as global hot spots of diversity. Both are threatened by climate changes that are projected to have significant impacts on the quantity and variability of rainfall and affect key ecosystem drivers (e.g. fire regimes). This poses significant challenges to monitoring programs designed to detect these impacts. Effective monitoring of the impact of climate change on biodiversity (rather than individual species) requires a cross‐disciplinary, coordinated, focused and integrated approach. Ideally, this should involve a multidisciplinary team of specialists working to a common plan on the same set of plots. The contributions of ‘citizen scientists’ are potentially useful if well managed. Biodiversity per se (across all kingdoms of life, and including the levels of the gene, population and community) should be monitored, especially key species interactions and processes. Forestcheckis an example of such a program which has been applied in forests in south‐west Western Australia since 2001. In concert with measuring the direct impact of climate change on biodiversity and the indirect impact of factors that affect biodiversity (such as disease, invasive species, fire regime and habitat removal), there is a need for a proactive focus on creating, maintaining and monitoring resilience to climate change impacts in ecosystems. It is also necessary to monitor the effectiveness of management actions such as vegetation thinning, changes in fire regimes, species translocations and revegetation of farmland to link isolated protected areas in agricultural landscapes, remnant native vegetation in rangelands and extensive protected areas. A pluralist approach is recommended. This should include natural experiments, matched photographs where available, passive adaptive management, active adaptive management and traditional reductionist scientific investigation. The resultant synthesis of information from this range of sources is likely to be a predictive, robust and credible record of historical change.
The influence of changes in habitat structure on the species composition of bird assemblages in the southern Kalahari
Authors: SEYMOUR COLLEEN L. , DEAN W. R. J.
Published: November 2009

Land use management practices often change habitat structure, which in turn influence diversity and the composition of floral and faunal assemblages. In the southern Kalahari, southern Africa, heavy grazing after above‐average rainfall has lead to bush thickening, and widespread use of arboricides and/or removal of large trees for firewood has also impacted habitat structure. At sites near Kimberley, in South Africa, we investigated the effects of these changes on bird species richness and which aspects of habitat structure most influenced bird assemblage diversity and composition. We also investigated correlations between bird life history traits and habitat characteristics using RLQ analysis. Bird species richness and abundance were both explained by vertical habitat heterogeneity and density of woody species between the heights of 0–2 m, with bird species richness also explained by the density of woody species at heights above 6 m. Large trees within bush‐thickened areas dampened the effects of bush thickening on bird assemblages by enabling certain species to persist, consistent with the idea that large trees are keystone structures. Smaller insectivorous gleaners, ball‐ and cup‐nesters, birds with parts of their range extending into arid areas and birds with long‐wavelength plumage (i.e. red, orange or yellow plumage) dominated bush‐thickened habitats. Seed‐eaters, burrow‐ and ground‐nesters, bark‐foragers, birds that perch and sally, or perch and swoop to the ground, were all negatively associated with bush thickening. Cavity‐nesters, bark‐foragers, hawkers, frugivores, birds that perch and sally and species with iridescent plumage were negatively affected by the loss of large trees. Of the common species analysed, nearly 40% of species had life history traits tied to large trees; and 68% had traits negatively associated with bush thickening and removal of large trees together, suggesting that where these changes in habitat occur simultaneously, bird diversity will be strongly affected.
Application of QuickBird and aerial imagery to detect Pinus radiata in remnant vegetation
Authors: HABY NERISSA , TUNN YUKI , CAMERON JAMES
Published: November 2009

The invasion of Pinus radiata from long‐term established plantations is contributing to the degradation of fragmented and isolated remnants of native vegetation. Within the south‐east of South Australia, the 20 vegetation communities that occur within 500 m of a plantation edge are at risk, including nine state threatened communities. To plan effective mitigation strategies, the current extent and distribution of P. radiata needs to be ascertained. High spatial resolution, multispectral QuickBird imagery and aerial photography were used to classify P. radiata within eucalypt and acacia woodlands, melaleuca shrubland, modified pasture and an Eucalyptus globulus plantation. Unsupervised classification of aerial photography gave the best result showing reasonable conformity with the observed distribution of P. radiata at the site scale. However, the 9.4 ± 13.5 (SD) cover classified in the quadrats sampled for the accuracy assessment exceeded the 1.4 ± 2.4 (SD) P. radiata cover determined from an independent dataset. Only 30.1 ± 37.9% (SD) of trees within the quadrats and 9.40 ± 13.49% (SD) of their foliage cover were classified. Trees detected by partial classification of canopy were positively correlated with both tree height and canopy diameter. Overall, the low detection rates were attributed to insufficient spectral resolution. Using higher resolution imagery, together with an object‐based image analysis or combination of multispectral and airborne digital image classification, restricted to large emergent adult trees using LiDAR analysis, is likely to improve adult P. radiata detection accuracy.
Variation in ecophysiology and carbon economy of invasive and native woody vines of riparian zones in south‐eastern Queensland
Authors: OSUNKOYA OLUSEGUN O. , BAYLISS DEANNA , PANETTA F. D. , VIVIAN‐SMITH GABRIELLE
Published: November 2009

Exotic and invasive woody vines are major environmental weeds of riparian areas, rainforest communities and remnant natural vegetation in coastal eastern Australia, where they smother standing vegetation, including large trees, and cause canopy collapse. We investigated, through glasshouse resource manipulative experiments, the ecophysiological traits that might facilitate faster growth, better resource acquisition and/or utilization and thus dominance of four exotic and invasive vines of South East Queensland, Australia, compared with their native counterparts. Relative growth rate was not significantly different between the two groups but water use efficiency (WUE) was higher in the native species while the converse was observed for light use efficiency (quantum efficiency, AQE) and maximum photosynthesis on a mass basis (). The invasive species, as a group, also exhibited higher respiration load, higher light compensation point and higher specific leaf area. There were stronger correlations of leaf traits and greater structural (but not physiological) plasticity in invasive species than in their native counterparts. The scaling coefficients of resource use efficiencies (WUE, AQE and respiration efficiency) as well as those of fitness (biomass accumulated)versusmany of the performance traits examined did not differ between the two species‐origin groups, but there were indications of significant shifts in elevation (intercept values) and shifts along common slopes in many of these relationships – signalling differences in carbon economy (revenue returned per unit energy invested) and/or resource usage. Using ordination and based on 14 ecophysiological attributes, a fair level of separation between the two groups was achieved (51.5% explanatory power), with AQE, light compensation point, respiration load, WUE, specific leaf area and leaf area ratio, in decreasing order, being the main drivers. This study suggests similarity in trait plasticity, especially for physiological traits, but there appear to be fundamental differences in carbon economy and resource conservation between native and invasive vine species.
Elevational gradients in species abundance, assemblage structure and energy use of rainforest birds in the Australian Wet Tropics bioregion
Authors: WILLIAMS STEPHEN E. , SHOO LUKE P. , HENRIOD ROBERT , PEARSON RICHARD G.
Published: November 2009

Elevational patterns of species richness, local abundance and assemblage structure of rainforest birds of north‐eastern Australia were explored using data from extensive standardized surveys throughout the region. Eighty‐two species of birds were recorded with strong turnover in assemblage structure across the elevational gradient and high levels of regional endemism in the uplands. Both species richness and bird abundance exhibited a humped‐shaped pattern with elevation with the highest values being between 600 and 800 m elevation. While much of the variability in species richness could be explained by the species–area relationship, analyses of net primary productivity (NPP) and total daily energy consumption of the bird community (energy use) suggest that ecosystem energy flow or constraints may be a significant determinant of species richness. Species richness is positively correlated with local bird abundance which itself is closely related to total energy use of the bird community. We suggest the hypothesis that lower NPP limits bird abundance and energy use in the uplands (>500 m) and that low bird energy use and species richness in the lowlands is limited by a seasonal bottleneck in available primary productivity and/or a species pool previously truncated by an extinction filter imposed by the almost complete disappearance of rainforest in the lowlands during the glacial maxima. We suggest that some of the previously predicted impacts of global warming on biodiversity in the uplands may be partially ameliorated by increases in NPP because of increasing temperatures. However, these relationships are complex and require further data specifically in regard to direct estimates of primary productivity and detailed estimates of energy flow within the assemblage.
Resprouting responses of trees in a fire‐prone tropical savanna following severe tornado damage
Authors: FRANKLIN DONALD C. , GUNTON RICHARD M. , SCHATZ JON , LAWES MICHAEL J.
Published: November 2009

Fire and windstorms can cause severe disturbance, but their consequences for trees may differ. Resprouting enables persistence through frequent and severe disturbance. To explore responses to an abnormal disturbance and evolutionary hypotheses about resprouting as an adaptation, we analysed patterns of resprouting in four taxa following a tornado in a tropical savanna (Kakadu National Park, northern Australia) that is frequently burnt but is rarely subject to severe windthrow. Resprouting (i.e. survival) rates varied markedly among taxa and damage types, from 35% in uprooted Acacia spp. (Mimosaceae) to over 90% in eucalypts (Myrtaceae) and Erythrophleum chlorostachys (Caesalpiniaceae) with persistent tertiary branches. Most resprouting was from the epicormic strand‐bank on the stem or branches. Across all taxa, greater architectural damage reduced resprouting rates. Damage was magnified by proximity to the centre of the tornado path, suggesting an additional effect of internal damage. Smaller trees, trees whose trunks were snapped below 2 m, and those closer to the tornado path were more likely to resprout basally or from the roots rather than epicormically, although in Acacia spp. these resprouting modes were positively correlated. We hypothesize that trees of fire‐prone savannas have evolved to grow rapidly out of the flame zone; this was supported by more detailed analyses of Eucalyptus tetrodonta suggesting that resprouts emerging nearer the ground grow faster. Resprouting at ground level may be a bet‐hedging strategy to spread the risk of mortality among multiple stems when elevated sprouting was not possible. We conclude that the adaptation of eucalypts to frequent fire does not jeopardize their survival (by comparison with the more generalist Acacia spp.) following severe windthrow, providing an example of ‘exaptation’ rather than trade‐off in fitness under contrasting stressors.
The naturalization to invasion transition: Are there introduction‐history correlates of invasiveness in exotic plants of Australia?
Authors: PHILLIPS MEGAN L. , MURRAY BRAD R. , LEISHMAN MICHELLE R. , INGRAM ROBERT
Published: November 2009

Of the large number of exotic plant species that become naturalized in new geographic regions, only a subset make the transition to become invasive. Identifying the factors that underpin the transition from naturalization to invasion is important for our understanding of biological invasions. To determine introduction‐history correlates of invasiveness among naturalized plant species of Australia, we compared geographic origin, reason for introduction, minimum residence time and growth form between naturalized non‐invasive species and naturalized invasive plant species. We found that more invasive species than expected originated from South America and North America, while fewer invasive species than expected originated from Europe and Australasia. There was no significant difference between invasive and non‐invasive species with respect to reason for introduction to Australia. However, invasive species were significantly more likely to have been resident in Australia for a longer period of time than non‐invasive species. Residence times of invasive species were consistently and significantly higher than residence times of non‐invasive species even when each continent of origin was considered separately. Furthermore, residence times for both invasive and non‐invasive species varied significantly as a function of continent of origin, with species from South America having been introduced to Australia more recently on average than species from Europe, Australasia and North America. We also found that fewer invasive species than expected were herbs and more invasive species than expected were primarily climbers. Considered together, our results indicate a high propensity for invasiveness in Australia among exotic plant species from South America, given that they appear in general capable of more rapid shifts to invasiveness than aliens from other regions. Furthermore, our findings support an emerging global generality that introduction‐history traits must be statistically controlled for in comparative studies exploring life‐history and ecological correlates of invasion success.
Ecological role of control agent, and not just host‐specificity, determine risks of biological control
Authors: SEYMOUR COLLEEN L. , VELDTMAN RUAN
Published: November 2009

Biological control agents used to manage alien vegetation are generally viewed as providing an ecosystem service, owing to reduced ecological and economic costs of invasion following their release. In particular, gall‐formers are popular as biological control agents because they are host‐specific and therefore considered low risk. However, galls can also be considered to be ecological engineers, because they provide nutritional resources for native invertebrates. We tested whether native invertebrates had formed associations with the gall‐forming fungus Uromycladium tepperianum, introduced into South Africa to control the Australian invasive alien tree Acacia saligna, by collecting U. tepperianum galls and monitoring emergence. We found that a number of invertebrates had formed associations with the biological control agent, among which was the important citrus pest, Thaumatotibia leucotreta (false codling moth). We used pheromone‐baited traps to ascertain if this supplementary source of T. leucotreta increased their abundance in orchards close to patches of gall host, but did not find this to be the case. We did find, however, that control measures used by farmers explained T. leucotreta abundances in traps, which may have obscured detection of any effects of a nearby host for the pest. Nevertheless, this study illustrates the first case of a host‐specific classical biological control agent providing resources for an economically significant crop pest. We conclude that although biological control agents are strictly vetted to ensure host‐specificity, introduced biological control agents that become abundant and can act as ecological engineers pose risks when native biota form associations with them, resulting in a number of possible cascading ecosystem effects. In addition, there could be economic consequences when these associated species include agricultural pests. We conclude that not just host specificity, but potential ecological effects of biological control agents, should be considered in their selection.
Large‐scale predator control increases population viability of a rare New Zealand riverine duck
Authors: WHITEHEAD AMY L. , ELLIOTT GRAEME P. , MCINTOSH ANGUS R.
Published: November 2009

The introduction of mammalian predators to oceanic islands has led to dramatic declines in the abundance of many native species. Conservation management of these species often relies on low‐cost predator control techniques that can be implemented over large scales. Assessing the effectiveness of such management techniques is difficult, but using population viability analyses (PVA), which identify the population growth rate (λ) and extinction risk of threatened species, may offer a solution. PVA provide the opportunity to compare the relative effectiveness of various management options and can identify knowledge gaps to prioritize research efforts. We used PVA to assess the population viability of whio (Hymenolaimus malacorhynchos), a rare riverine duck endemic to New Zealand. Current populations are threatened by introduced mammalian predators and are rapidly declining in both distribution and abundance. Whio conservation management is dominated by large‐scale, low‐intensity predator control, targeting introduced stoats (Mustela erminea). There is evidence that such control increases whio productivity but it is unknown if this increase is sufficient for long‐term population persistence. We undertook a stochastic PVA to assess the viability of whio populations under different management scenarios using data obtained from a 6‐year study of whio demographic responses to predator control. Populations with no predator control and low productivity will rapidly decline to extinction. Increasing productivity through predator control increased population viability but populations still showed a declining trajectory. A perturbation analysis showed that the growth rate of whio populations was largely driven by adult survival. Therefore, future research should target obtaining more robust estimates of adult survival, particularly how it is affected by predator control. Overall, our analysis indicated that large‐scale predator control increases the short‐term viability of whio populations but is insufficient for long‐term population persistence.
The ranging behaviour of a large sexually dimorphic herbivore in response to seasonal and annual environmental variation
Authors: SHANNON GRAEME , PAGE BRUCE R. , DUFFY KEVIN J. , SLOTOW ROB
Published: November 2009

The allometric relationships of body size play a principle role in determining how large herbivores respond to the marked spatial and temporal heterogeneity of the savanna biome. Using location data collected over an 8‐year period from five distinct study sites, we investigated the influence of environmental variation (using phenological and rainfall data) on the ranging behaviour of the African elephant (Loxodonta africana), a species that exhibits pronounced sexual dimorphism. Both sexes expanded their annual ranges during years of high rainfall and contracted their ranges during periods of resource scarcity, concurring with the hypothesis that abiotic factors dictate the distribution of large generalist herbivores at the landscape scale. However, female elephant did not exhibit the same consistent response to rainfall at the seasonal scale. Furthermore, male elephant demonstrated a reduction in their daily displacement distances during the dry winter season, and altered their movement rates on the basis of seasonal rainfall. These results suggest that male elephant are able to consistently adapt their movement behaviour according to forage quality and abundance. Smaller‐bodied female elephant on the other hand, are unlikely to exhibit the same flexibility in their ranging behaviour because of their higher relative nutritional demands, lower tolerance to fibrous forage and the social and energetic constraints of group living with juveniles. Our study highlights the major role that body size and sociality plays in the decision making of sexually dimorphic herbivores. These differences can have important implications for effective conservation and management, particularly with regard to demographic (e.g. survival) and ecological (e.g. habitat use) factors.
Effects of structural diversity and identity of patches of habitat on diversity of benthic assemblages
Authors: MATIAS M. G. , UNDERWOOD A. J. , COLEMAN R. A.
Published: November 2009

A fundamental problem in ecology, regardless of habitat or system, is understanding the relationship between habitats and assemblage of organisms. It is commonly accepted that differences in composition and surrounding landscape of habitats affect the diversity of assemblages, although there is not much empirical evidence because of difficulties of manipulating structure in many habitats. These relationships were examined experimentally, using habitats of artificial turfs that are colonized by diverse assemblages of gastropods. Each habitat was made of nine sub‐habitats, which were sampled individually to allow tests of hypotheses about the effect of type of habitat and the influence of other adjacent sub‐habitats on the colonizing assemblage. Turf habitats were deployed for 8 weeks on a rocky shore after which they were collected and the colonizing assemblages of gastropods sampled. Independently of the types of turfs combined to form different habitats, there were more species where there was more than one type of component in a habitat (i.e. structural diversity). The type of habitat (i.e. structural identity) itself had little or no influence on the colonizing assemblage. The number of species colonizing short‐sparse and short‐dense turfs was influenced by which type of habitat was adjacent. Thus, when units of one type (e.g. short‐sparse turf) were added to a patch of habitat of long‐sparse turfs, the number of species in short‐sparse turfs was greater than in patches of the same type. This also increased total number of taxa in the whole patch of habitat. These results show how diversity of gastropods colonizing heterogeneous patches of habitat is influenced not only by the number of types of sub‐habitats, but also by interactions with surrounding sub‐habitats. These findings reiterate the importance of investigating the role of structure of habitats and of their surrounding landscapes across different systems, irrespective of their size or associated assemblages of organisms.
Spatio‐temporal feeding selection of red deer in a mountainous landscape
Authors: BEE JENNIE N. , WRIGHT DAVID M. , TANENTZAP ANDREW J. , LEE WILLIAM G. , LAVERS ROGER B. , MILLS JAMES A. , MARK ALAN F. , COOMES DAVID A.
Published: November 2009

Understanding the dietary consumption and selection of wild populations of generalist herbivores is hampered by the complex array of factors. Here, we determine the influence of habitat, season, and animal density, sex, and age on the diet consumption and selection of 426 red deer (Cervus elaphus scoticus) culled in Fiordland National Park, New Zealand. Our site differs from studies elsewhere both in habitat (evergreen angiosperm‐dominated forests) and the intensity of hunting pressures. We predicted that deer would not consume forage in proportion to its relative availability, and that dietary consumption would change among and within years in response to hunting pressures that would also limit opportunities for age and sex segregation. Using canonical correspondence analysis, we evaluated the relative importance of different drivers of variation in diet consumption assessed from gut content and related these to available forage in the environment. We found that altitude explained the largest proportion of variation in diet consumption, reflecting the ability of deer to alter their consumption and selection in relation to their foraging grounds. Grasses formed a high proportion of the diet consumption, even for deer culled several kilometres from the alpine grasslands. In the winter months, when the alpine grasslands were largely inaccessible, less grass was eaten and deer resorted to woody plants that were avoided in the summer months. Surprisingly, there were no significant dietary differences between adults and juveniles and only subtle differences between the sexes. Sex‐based differences in diet consumption are commonly observed in ungulate species and we suggest that they may have been reduced in our study area owing to decreased heterogeneity in available forage as the diversity of palatable species decreased under high deer browsing pressures, or by intense hunting pressure.
Conservation and ecological implications of the use of space by chilla foxes and free‐ranging dogs in a human‐dominated landscape in southern Chile
Authors: SILVA‐RODRÍGUEZ EDUARDO A. , ORTEGA‐SOLÍS GABRIEL R. , JIMÉNEZ JAIME E.
Published: November 2009

We investigated whether domestic dogs (Canis lupus familiaris) influenced the use of space by chilla foxes (Lycalopex griseus) in southern Chile and tested the hypothesis that dogs interfere with chillas. We used scent stations and occurrence of scats within systematically placed plots to assess habitat use by both species and to test whether dogs were associated to the use of space by chillas. Activity data were obtained from captures for both species, and telemetry for foxes. Diet of both species was analysed in order to tease out the potential existence of exploitation competition. We found that, when active, chillas used prairies more and native forest less than expected according to availability, whereas inactive chillas (during the day) preferred native forest, the only habitat type that dogs did not use. The odds of dog occurrence increased at shorter distance to human houses, whereas the inverse pattern was observed for chillas. Poisson models showed that the number of chilla visits to scent stations was negatively correlated with the number of dog visits. We observed dogs persecuting and/or killing chillas which was also corroborated by local people that used dogs to prevent chilla‐related poultry losses, supporting the idea that dogs harass foxes actively. The analysis of scats showed that dogs fed mainly on house food and domestic ruminant carcasses whereas foxes fed on hare, hens, mice and wild birds, thus suggesting that exploitation competition is not a strong alternative hypothesis as a proximate cause for the patterns observed. We conclude that dogs seem to constrain the use of space by wild carnivores via interference.
Transformation of riparian forest to woodland in Mapungubwe National Park, South Africa, between 1990 and 2007
Authors: O'CONNOR TIMOTHY G.
Published: November 2009

Canopy tree survival and compositional change of the Greefswald forest on the Limpopo River, South Africa, were monitored between 1990 and 2007 in response to a severe drought (cessation of flow in 1991/2), water abstraction commencing in 1991, a mega‐flood in 2000 and increasing impact of elephants since 2000. Aerial photographs confirmed that forest area had not decreased during the 35 years prior to the study. In total, 25% of 428 canopy trees tagged in 1990 had died by 2005. Tree density was reduced from 22.8 to 16.3 trees per hectare. Forest was thus transformed to woodland. Mortality was attributed mainly to drought stress (47%), drought in combination with creeper infestation (30%) and the flood (21%). Of the nine main canopy species, mortality was highest for Acacia xanthophloea (56%) and Faidherbia albida (37%) mainly because of drought‐related stress, and Ficus sycamorus (25%) mainly because of the flood. Water extraction increased drought‐related mortality in the area of extraction by 45%. Creepers rendered microphyllous but not broad‐leafed species more vulnerable to drought‐induced mortality. Elephants were responsible for a further 3% mortality between 2005 and 2007. Composition has shifted towards ‘drought‐tolerant’ species not selected by elephants, namely Philenoptera violacea, Xanthocercis zambesiaca and Schotia brachypetala. Initial concern about water abstraction was eclipsed by a rapid, unpredictable concatenation of a series of rare events that transformed forest to woodland in less than 15 years.
Glucocorticoid suppression of intraovarian levels of prostaglandins and plasminogen activator activity at ovulation in the rat ovary
Authors: Mikuni Masato , Mitsube Kenrokure , Peterson C. Matthew , Brännström Mats
Published: December 2009

Aim:  Ovulation is a local physiological inflammatory process with active participation of inflammatory mediators and immune cells. To prevent extensive inflammatory injury to the follicle at ovulation there is also a local anti‐inflammatory system at ovulation, converting the inactive glucocorticoid cortisone to the more potent cortisol. The aim of this study was to examine the effects of the potent glucocorticoid analogue, dexamethasone (DEX), on ovulation rate and the ovarian production of the ovulatory mediators prostaglandins (PG) and plasminogen activators (PA).

Methods:  DEX (0.3, 3, or 100 µM) was administered to an in vitro rat ovarian perfusion system prior to the addition of an ovulation‐inducing dose of luteinizing hormone (LH) and 3‐isobutyl‐1‐methylxanthine (IBMX). Control ovaries were perfused only with LH + IBMX. Each perfusion experiment extended over 20 h with ovulation occurring in vitro around 12–15 h after hormonal stimulation. In a second set of perfusion experiments, extending over 10 h, the tissue levels of PG and PA activity in the ovary were evaluated at a time 2–5 h before anticipated ovulation.

Results:  The median numbers of ovulated oocytes in the groups with DEX of 0.3, 3, and 100 µM were 17.0, 8.5 and 11.0 per treated ovary, respectively. These numbers were not different from those of LH + IBMX‐controls (12.5). DEX (100 µM) suppressed tissue levels of PGE2 and PA activity and decreased (DEX 3 µM, 100 µM) estradiol levels in the perfusion media.

Conclusion:  These results indicate that certain degrees of suppression of PG, PA activity, and estradiol are not sufficient to modulate ovulation rate and/or that glucocorticoids may positively modulate other mediator pathways that exert inhibitory influence on ovulation.
Fatigue crack initiation detection by an infrared thermography method
Authors: WAGNER D. , RANC N. , BATHIAS C. , PARIS P.C.
Published: November 2009

In this paper, the study of the temperature variation during fatigue tests was carried out on different materials (steels and aluminium alloys). Tests were performed at ambient temperature using a piezoelectric fatigue system (20 kHz). The temperature field was measured on the surface of the specimen, by means of an infrared camera.

Just at the beginning of the test, it was observed that the temperature increased, followed by a stabilization which corresponds to the balance between dissipated energy associated with microplasticity and the energy lost by convection and radiation at the specimen surface and by conduction inside the specimen. At the crack initiation, the surface temperature suddenly increases (whatever the localization of the initiation), which allows the determination of the number of cycles at the crack initiation and the number of cycles devoted to the fatigue crack propagation. In the gigacycle fatigue domain, more than 92% of the total life is devoted to the initiation of the crack.

So, the study of the thermal dissipation during the test appears a promising method to improve the understanding of the damage and failure mechanism in fatigue and to determine the number of cycles at initiation.
Influence of residual fatigue damage on the fracture toughness parameters of an AA6082‐T6 aluminium alloy
Authors: CADENAS‐HERRERA P. , AMROUCHE A. , MESMACQUE G. , JOZWIAK K. , PUCHI‐CABRERA E. S.
Published: November 2009

The present investigation has been carried out in order to study the influence of the previous accumulated fatigue damage induced during high cycle fatigue (HCF), on the fracture toughness parameters of an AA6082‐T6 aluminium alloy. The results show that previous fatigue damage accumulated in HCF does not affect the tensile static mechanical properties of the material, but gives rise to a significant debit of the toughness properties on this aluminium alloy. The fracture toughness results have shown that the crack opening displacement at a crack extension of 0.2 mm (COD0.2) decreases in the range of ∼18 to 36% whereas the value of the non‐linear fracture mechanics parameter J0.2, decreases in the range of ∼11 to 25% at applied maximum stresses of 200 and 275 MPa, respectively. Optical microscopy observations conducted on the surface of the specimens subjected to HCF damage indicate the existence of microcracks ∼15 to 25 μm long nucleated along the grain boundaries of the material. Also, the scanning electron microscopy (SEM) observations of the fracture surfaces after the tearing tests show the predominance of a ductile fracture mechanism for the material prior to residual fatigue damage, whereas a mixed ductile–brittle fracture mechanism and the presence of flat facets were observed on the fracture surfaces of the specimens with a fatigue damage of 0.70.
Understanding food‐web persistence from local to global scales
Authors: Stouffer Daniel B. , Bascompte Jordi
Published: November 2009

Ecology letters(2010) 13: 154–161

Understanding food‐web persistence is an important long‐term objective of ecology because of its relevance in maintaining biodiversity. To date, many dynamic studies of food‐web behaviour—both empirical and theoretical—have focused on smaller sub‐webs, called trophic modules, because these modules are more tractable experimentally and analytically than whole food webs. The question remains to what degree studies of trophic modules are relevant to infer the persistence of entire food webs. Four trophic modules have received particular attention in the literature: tri‐trophic food chains, omnivory, exploitative competition, and apparent competition. Here, we integrate analysis of these modules’ dynamics in isolation with those of whole food webs to directly assess the appropriateness of scaling from modules to food webs. We find that there is not a direct, one‐to‐one, relationship between the relative persistence of modules in isolation and their effect on persistence of an entire food web. Nevertheless, we observe that those modules which are most commonly found in empirical food webs are those that confer the greatest community persistence. As a consequence, we demonstrate that there may be significant dynamic justifications for empirically‐observed food‐web structure.
Seasonal variations of phage life strategies and bacterial physiological states in three northern temperate lakes
Authors: Maurice C. F. , Bouvier T. , Comte J. , Guillemette F. , Del Giorgio P. A.
Published: November 2009

The current consensus concerning the prevalence of lytic and lysogenic phage life cycles in aquatic systems is that the host physiological state may influence viral strategies, lysogeny being favoured when hosts have reduced metabolic rates. We explored this hypothesis, by following phage cycle dynamics, host physiological state and metabolic activity over an annual cycle in three lakes subjected to strong seasonal fluctuations, including 4–5 months of ice cover. We observed marked seasonal dynamics of viral and bacterial communities, with low bulk and cell‐specific bacterial metabolism in winter, and a dramatic increase in injured bacteria under the ice cover in all lakes. This period was accompanied by contrasting patterns in the proportion of lysogenic cells. In the eutrophic lake, times of low bacterial metabolic rates and high proportion of damaged cells corresponded to highest levels of lysogeny, supporting the notion that hosts are a ‘refuge’ for viruses. In the two unproductive lakes, peaks of injured cells corresponded to a minimum of lysogeny, suggesting an ‘abandon the sinking ship’ response, where the prophage replicates before the loss of genome. We suggest that these diverging responses to the host physiological state are not contradictory, but rather that there may be thresholds of cell stress and metabolic activity leading to one or the other response.
Top‐down control of microbial activity and biomass in an Arctic soil ecosystem
Authors: Allen Bethany , Willner Dana , Oechel Walter C. , Lipson David
Published: November 2009

Globally, soil microbes preside over vast carbon stores, and both microbial biomass and activity are known to be regulated by bottom‐up controls, that is, limitation by nutrients and energy. However, there is evidence that grazing by protozoans exerts top‐down controls on biomass. Here, we investigate top‐down control by phage on soil microbes using an experimental site near Barrow, Alaska (71°N, 157°W) during the 2007 growing season. Soil measurements were taken from sites that covered a range of microtopographical features within a drained and thawed lake basin including high‐ and low‐centred ice‐wedge polygons to estimate the availability of carbon and nitrogen for microbes. Using both field and laboratory experiments, we successfully increased both microbial biomass and respiration by decreasing phage populations. The addition of carbon and nutrients to soils had no significant effects on biomass or respiration, indicating a lack of bottom‐up controls. Additionally, we present the first use of tea extracts as a potent anti‐phage agent in soils. Our results suggest that top‐down controls, such as phage predation, are critical to regulation of microbial activities in Arctic soils.
Fusarium spp. associated with rice Bakanae: ecology, genetic diversity, pathogenicity and toxigenicity
Authors: Wulff Ednar G. , Sørensen Jens L. , Lübeck Mette , Nielsen Kristian F. , Thrane Ulf , Torp Jan
Published: November 2009

African and Asian populations of Fusarium spp. (Gibberella fujikuroi species complex) associated with Bakanae of rice (Oryzae sativa L.) were isolated from seeds and characterized with respect to ecology, phylogenetics, pathogenicity and mycotoxin production. Independent of the origin, Fusarium spp. were detected in the different rice seed samples with infection rate ranges that varied from 0.25% to 9%. Four Fusaria (F. andiyazi, F. fujikuroi, F. proliferatum and F. verticillioides) were found associated with Bakanae of rice. While three of the Fusaria were found in both African and Asian seed samples, F. fujikuroi was only detected in seed samples from Asia. Phylogenetic studies showed a broad genetic variation among the strains that were distributed into four different genetic clades. Pathogenicity tests showed that all strains reduced seed germination and possessed varying ability to cause symptoms of Bakanae on rice, some species (i.e. F. fujikuroi) being more pathogenic than others. The ability to produce fumonisins (FB1 and FB2) and gibberellin A3 in vitro also differed according to the Fusarium species. While fumonisins were produced by most of the strains of F. verticillioides and F. proliferatum, gibberellin A3 was only produced by F. fujikuroi. Neither fumonisin nor gibberellin was synthesized by most of the strains of F. andiyazi. These findings provide new information on the variation within the G. fujikuroi species complex associated with rice seed and Bakanae disease.
Anthropogenic disturbance affects the structure of bacterial communities
Authors: Ager Duane , Evans Simon , Li Hong , Lilley Andrew K. , Van Der Gast Christopher J.
Published: November 2009

Patterns of taxa abundance distributions are the result of the combined effects of historical and biological processes and as such are central to ecology. It is accepted that a taxa abundance distribution for a given community of animals or plants following a perturbation will typically change in structure from one of high evenness to increasing dominance. Subsequently, such changes in evenness have been used as indicators of biological integrity and environmental assessment. Here, using replicated experimental treehole microcosms perturbed with different concentrations of the pollutant pentachlorophenol, we investigated whether changes in bacterial community structure would reflect the effects of anthropogenic stress in a similar manner to larger organisms. Community structure was visualized using rank–abundance plots fitted with linear regression models. The slopes of the regression models were used as a descriptive statistic of changes in evenness over time. Our findings showed that bacterial community structure reflected the impact and the recovery from an anthropogenic disturbance. In addition, the intensity of impact and the rate of recovery to pre‐perturbation structure were dose‐dependent. These properties of bacterial community structures may potentially provide a metric for environmental assessment and regulation.
Abundances of crenarchaeal amoA genes and transcripts in the Pacific Ocean
Authors: Church Matthew J. , Wai Brenner , Karl David M. , DeLong Edward F.
Published: November 2009

Planktonic Crenarchaea are thought to play a key role in chemolithotrophic ammonia oxidation, a critical step of the marine nitrogen (N) cycle. In this study, we examined the spatial distributions of ammonia‐oxidizing Crenarchaea across a large (∼5200 km) region of the central Pacific Ocean. Examination of crenarchaeal 16S rRNA, ammonia monooxygenase subunit A (amoA) genes, and amoA transcript abundances provided insight into their spatial distributions and activities. Crenarchaeal gene abundances increased three to four orders of magnitude with depth between the upper ocean waters and dimly lit waters of the mesopelagic zone. The resulting median value of the crenarchaeal amoA: 16S rRNA gene ratio was 1.3, suggesting the majority of Crenarchaea in the epi‐ and mesopelagic regions of the Pacific Ocean have the metabolic machinery for ammonia oxidation. Crenarchaeal amoA transcript abundances typically increased one to two orders of magnitude in the transitional zone separating the epipelagic waters from the mesopelagic (100–200 m), before decreasing into the interior of the mesopelagic zone. The resulting gene copy normalized transcript abundances revealed elevated amoA expression in the upper ocean waters (0–100 m) where crenarchaeal abundances were low, with transcripts decreasing into the mesopelagic zone as crenarchaeal gene abundances increased. These results suggest ammonia‐oxidizing Crenarchaea are active contributors to the N cycle throughout the epi‐ and mesopelagic waters of the Pacific Ocean.