bluuebunny/crossref_metadata_2025 huggingface dataset:
Identification of two cationic amino acid transporters required for nutritional signaling during mosquito reproduction
Authors: Attardo Geoffrey M. , Hansen Immo A. , Shiao Shin-Hong , Raikhel Alexander S.
Published: August 2006

The defining characteristic of anautogenous mosquitoes is their requirement for a blood meal to initiate reproduction. The need for blood drives the association of vector and host, and is the primary reason why anautogenous mosquitoes are effective disease vectors. During mosquito vitellogenesis, a key process in reproduction, yolk protein precursor (YPP) gene expression is activated specifically in the fat body, the insect analogue of the vertebrate liver. We have demonstrated that blood meal derived amino acids (AAs) activate YPP genes via the target of rapamycin (TOR)-signal transduction pathway. Here we show, by stimulating fat bodies with balanced AA solutions lacking individual AAs, that specific cationic and branched AAs are essential for activation of the vitellogenin (vg) gene, the major YPP gene. Treatment of fat bodies with AA uptake inhibitors results in a strong inhibition of AA-induced vg gene expression proving that an active transport mechanism is necessary to transduce the AA signal. We identified two cationic AA transporters (CATs) in the fat body of Aedes aegyptifemales - Aa slimfast and iCAT2. RNAi knockdown of slimfast and iCAT2 results in a strong decrease in the response to AAs by the vg gene similar to that seen due to TOR inhibition. These data demonstrate that active uptake of specific AAs plays a key role in nutritional signaling during the onset of vitellogenic gene expression in mosquitoes and it is mediated by two cationic AA transporters.
Signalling pathways involved in hypertonicity- and acidification-induced activation of Na+/H+ exchange in trout hepatocytes
Authors: Ahmed Khaled H. , Pelster Bernd , Krumschnabel Gerhard
Published: August 2006

In trout hepatocytes, hypertonicity and cytosolic acidification are known to stimulate Na+/H+ exchanger (NHE) activity, which contributes to recovery of cell volume and intracellular pH (pHi),respectively. The present study investigated the signalling mechanisms underlying NHE activation under these conditions. Exposing trout hepatocytes to cariporide, a specific inhibitor of NHE-1, decreased baseline pHi,completely blocked the hypertonicity-induced increase of pHi and reduced the hypertonicity-induced proton secretion by 80%. Changing extracellular pH (pHe)above and below normal values, and allowing cells to adjust pHi accordingly,significantly delayed alkalinization during hypertonic exposure, whereas following an acid load an enhanced pHi recovery with increasing pHe was seen. Chelating Ca2+, and thereby preventing the hypertonicity-induced increase in intracellular Ca2+ ([Ca2+]i), significantly diminished hypertonic elevation of pHi, indicating that Ca2+signalling might be involved in NHE activation. A reduction in alkalinization and proton secretion was also observed in the presence of the protein kinase A(PKA) inhibitor H-89 or the calmodulin (CaM) inhibitor calmidazolium. A complete inhibition of hypertonic- and acidification-induced changes of pHi concurrent with an increase in hypertonically induced proton efflux was seen with the protein kinase C (PKC) inhibitor chelerythrine. Recovery of pHi following sodium propionate addition was reduced by more than 60% in the presence of cariporide, was sensitive to PKA inhibition, and tended to be reduced by CaM inhibition. In conclusion, we showed that NHE-1 is the main acid secretion mechanism during hypertonicity and recovery following acid loading. In addition, Ca2+-, PKA- and CaM-dependent pathways are involved in NHE-1 activation for recovery of cell volume and pHi. On the other hand, PKC appeared to have an impact on NHE-independent pathways affecting intracellular acid-base homeostasis.
A critical understanding of the fractal model of metabolic scaling
Authors: Chaui-Berlinck José Guilherme
Published: August 2006

The exponent of the scaling of metabolic rate with body mass has been the subject of debate for more than a century. The argument is at two levels, one concerning questions of empirical support for the exponent and the other, how to derive it theoretically. At this second level, the exponent is usually treated as the outcome of an underlying physical burden and approached as the search for a natural law emerging within energetic and geometric constraints. Recently, a model relying on fractal geometry was proposed as a general explanation for the phenomenon. In the present study, a reanalysis of the fractal model is performed to verify its validity. All the conditions that allow for the connection between the geometric proposition and the allometric exponent are evaluated, as well as the energy loss minimization procedure put forward in the model. It is demonstrated that the minimization procedure is mathematically incorrect and ill-posed. Also, it is shown that none of the connecting conditions are fulfilled. Therefore, it is concluded that the fractal model lacks self-consistency and correct statement: it relies on strong assumptions of homogeneity in morpho-physiological features among organisms instead of demonstrating them, as claimed by its authors. It is proposed that empiricists and theoreticians should rather evaluate the frameworks for addressing metabolic scaling phenomena.
Flight control in the hawkmothManduca sexta: the inverse problem of hovering
Authors: Hedrick T. L. , Daniel T. L.
Published: August 2006

The inverse problem of hovering flight, that is, the range of wing movements appropriate for sustained flight at a fixed position and orientation, was examined by developing a simulation of the hawkmoth Manduca sexta. Inverse problems arise when one is seeking the parameters that are required to achieve a specified model outcome. In contrast, forward problems explore the outcomes given a specified set of input parameters. The simulation was coupled to a microgenetic algorithm that found specific sequences of wing and body motions, encoded by ten independent kinematic parameters, capable of generating the fixed body position and orientation characteristic of hovering flight. Additionally, we explored the consequences of restricting the number of free kinematic parameters and used this information to assess the importance to flight control of individual parameters and various combinations of them.

Output from the simulated moth was compared to kinematic recordings of hovering flight in real hawkmoths; the real and simulated moths performed similarly with respect to their range of variation in position and orientation. The simulated moth also used average wingbeat kinematics(amplitude, stroke plane orientation, etc) similar to those of the real moths. However, many different subsets of the available kinematic were sufficient for hovering flight and available kinematic data from real moths does not include sufficient detail to assess which, if any, of these was consistent with the real moth.

This general result, the multiplicity of possible hovering kinematics,shows that the means by which Manduca sexta actually maintains position and orientation may have considerable freedom and therefore may be influenced by many other factors beyond the physical and aerodynamic requirements of hovering flight.
Visual stimulation of saccades in magnetically tetheredDrosophila
Authors: Bender John A. , Dickinson Michael H.
Published: August 2006

Flying fruit flies, Drosophila melanogaster, perform `body saccades', in which they change heading by about 90° in roughly 70 ms. In free flight, visual expansion can evoke saccades, and saccade-like turns are triggered by similar stimuli in tethered flies. However, because the fictive turns in rigidly tethered flies follow a much longer time course, the extent to which these two behaviors share a common neural basis is unknown. A key difference between tethered and free flight conditions is the presence of additional sensory cues in the latter, which might serve to modify the time course of the saccade motor program. To study the role of sensory feedback in saccades, we have developed a new preparation in which a fly is tethered to a fine steel pin that is aligned within a vertically oriented magnetic field,allowing it to rotate freely around its yaw axis. In this experimental paradigm, flies perform rapid turns averaging 35° in 80 ms, similar to the kinematics of free flight saccades. Our results indicate that tethered and free flight saccades share a common neural basis, but that the lack of appropriate feedback signals distorts the behavior performed by rigidly fixed flies. Using our new paradigm, we also investigated the features of visual stimuli that elicit saccades. Our data suggest that saccades are triggered when expanding objects reach a critical threshold size, but that their timing depends little on the precise time course of expansion. These results are consistent with expansion detection circuits studied in other insects, but do not exclude other models based on the integration of local movement detectors.
Members of the crustacean hyperglycemic hormone (CHH) peptide family are differentially distributed both between and within the neuroendocrine organs ofCancercrabs: implications for differential release and pleiotropic function
Authors: Hsu Yun-Wei A. , Messinger Daniel I. , Chung J. Sook , Webster Simon G. , de la Iglesia Horacio O. , Christie Andrew E.
Published: August 2006

The crustacean hyperglycemic hormone (CHH) family of peptides includes CHH,moult-inhibiting hormone (MIH) and mandibular organ-inhibiting hormone (MOIH). In the crab Cancer pagurus, isoforms of these peptides, as well as CHH precursor-related peptide (CPRP), have been identified in the X-organ-sinus gland (XO-SG) system. Using peptides isolated from the C. pagurus SG, antibodies to each family member and CPRP were generated. These sera were then used to map the distributions and co-localization patterns of these peptides in the neuroendocrine organs of seven Cancer species: Cancer antennarius, Cancer anthonyi, Cancer borealis, Cancer gracilis, Cancer irroratus, Cancer magister and Cancer productus. In addition to the XO-SG, the pericardial organ (PO) and two other neuroendocrine sites contained within the stomatogastric nervous system, the anterior cardiac plexus (ACP) and the anterior commissural organ (ACO), were studied. In all species, the peptides were found to be differentially distributed between the neuroendocrine sites in conserved patterns: i.e. CHH, CPRP, MIH and MOIH in the XO-SG, CHH, CPRP and MOIH in the PO, and MOIH in the ACP (no immunolabeling was found in the ACO). Moreover, in C. productus (and probably in all species), the peptides present in the XO-SG and PO were differentially distributed between the neurons within each of these neuroendocrine organs (e.g. CHH and CPRP in one set of XO somata with MIH and MOIH co-localized in a different set of cell bodies). Taken collectively, the differential distributions of CHH family members and CPRP both between and within the neuroendocrine organs of crabs of the genus Cancersuggests that each of these peptides may be released into the circulatory system in response to varied, tissue-specific cues and that the PO- and/or ACP-derived isoforms may possess functions distinct from those classically ascribed to their release from the SG.
Critical role of zinc in hardening of Nereis jaws
Authors: Broomell Chris C. , Mattoni Mike A. , Zok Frank W. , Waite J. Herbert
Published: August 2006

Hardening of invertebrate jaws and mandibles has been previously correlated to diverse, potentially complex modifications. Here we demonstrate directly,for the first time, that Zn plays a critical role in the mechanical properties of histidine-rich Nereis jaws. Using nanoindentation, we show that removal of Zn by chelation decreases both hardness and modulus by over 65%. Moreover, reconstitution of Zn yields a substantial recovery of initial properties. Modulus and hardness of Zn-replete jaws exceed those attainable by current engineering polymers by a factor of >3. Zn-mediated histidine cross-links are proposed to account for this enhancement in mechanical properties.
Molecular characterization of the first aromatic nutrient transporter from the sodium neurotransmitter symporter family
Authors: Meleshkevitch Ella A. , Assis-Nascimento Poincyane , Popova Lyudmila B. , Miller Melissa M. , Kohn Andrea B. , Phung Elizabeth N. , Mandal Anita , Harvey William R. , Boudko Dmitri Y.
Published: August 2006

Nutrient amino acid transporters (NATs, subfamily of sodium neurotransmitter symporter family SNF, a.k.a. SLC6) represent a set of phylogenetically and functionally related transport proteins, which perform intracellular absorption of neutral, predominantly essential amino acids. Functions of NATs appear to be critical for the development and survival in organisms. However, mechanisms of specific and synergetic action of various NAT members in the amino acid transport network are virtually unexplored. A new transporter, agNAT8, was cloned from the malaria vector mosquito Anopheles gambiae (SS). Upon heterologous expression in Xenopus oocytes it performs high-capacity, sodium-coupled (2:1)uptake of nutrients with a strong preference for aromatic catechol-branched substrates, especially phenylalanine and its derivatives tyrosine and L-DOPA,but not catecholamines. It represents a previously unknown SNF phenotype, and also appears to be the first sodium-dependent B0 type transporter with a narrow selectivity for essential precursors of catecholamine synthesis pathways. It is strongly and specifically transcribed in absorptive and secretory parts of the larval alimentary canal and specific populations of central and peripheral neurons of visual-, chemo- and mechano-sensory afferents. We have identified a new SNF transporter with previously unknown phenotype and showed its important role in the accumulation and redistribution of aromatic substrates. Our results strongly suggest that agNAT8 is an important, if not the major, provider of an essential catechol group in the synthesis of catecholamines for neurochemical signaling as well as ecdysozoan melanization and sclerotization pathways, which may include cuticle hardening/coloring, wound curing, oogenesis, immune responses and melanization of pathogens.
First International Proficiency Study on West Nile Virus Molecular Detection
Authors: Niedrig Matthias , Linke Sonja , Zeller Herve , Drosten Christian
Published: August 2006

Background: West Nile virus (WNV) molecular detection is being conducted by a growing number of laboratories, but the degree of proficiency may vary between them. External quality control is needed.

Methods: We have conducted an international quality assurance study on WNV molecular detection. Participating laboratories tested noninfectious samples inactivated by heat and gamma irradiation. Participants received 7 coded lyophilized samples containing WNV of genetic lineages 1a, 1b, and 2 at 2600 to 18 000 000 RNA copies/mL, 3 samples containing heterologous flaviviruses, and 2 negative samples.

Results: Thirty laboratories participated. The average laboratory achieved 50% detection probability from 7762 copies/mL onward (probit analysis; 95% CI = 1174–24547 copies/mL). Lineages 1a and 1b were detected with equal efficiencies, but the lineage 2 strain (Ug37) was detected at significantly lower rates. Only 27% of participants were able to detect the 6 samples containing ≥1.8 × 104 copies/mL. Three laboratories generated false-positive results in negative samples. Six of 30 laboratories reported correct strain identification in 3 samples containing non-WNV flaviviruses. We observed a significant positive correlation between the capability of detecting non-WNV flaviviruses and detecting WNV lineage 2.

Conclusions: Most participants showed good performance in detecting lineage 1 WNV, the predominant virus in the Northern Hemisphere. The inability of some laboratories to detect even highly concentrated lineage 2 WNV downgraded the overall outcome. The lineage 2 material received through this study will provide laboratories with the necessary template for improving their assays. Such material is otherwise hard to obtain.
Cigarette smoke extract enhances oxytocin-induced rhythmic contractions of rat and human preterm myometrium
Authors: Nakamoto Tsuyoshi , Yasuda Katsuhiko , Yasuhara Masahiro , Nakajima Tatsuya , Mizokami Tomomi , Okada Hidetaka , Kanzaki Hideharu
Published: August 2006

Although smoking during pregnancy is a major risk factor for preterm delivery, the underlying mechanism by which smoking stimulates uterine contractions is still poorly understood. In the present study, we tried to clarify the effects of smoking on myometrial contractility induced by oxytocin (OT) using cigarette smoke extract (CSE). Myometrial strips, which were taken from the rat on day 16 of pregnancy, and from human preterm and term delivery groups, were incubated overnight with several doses of CSE at 37 ° C under non-hormonal conditions. The uterine contractile sensitivity and activity (force and frequency) upon exposure to OT were investigated. Furthermore, the expression levels of oxytocin receptor (OTR) mRNA in the myometrial strips were investigated by real-time PCR. Contractile sensitivity to OT in the rat CSE (10−7 pieces/ml) group was found to be significantly higher than in the control group (P < 0.05). Contractile activity did not differ between the CSE and control groups. The expression levels of rat OTR mRNA in the CSE (10−7 pieces/ml) group were significantly higher than in the control group (P < 0.01). Similarly, in preterm myometrial strips, the expression levels of human OTR mRNA in the CSE (10−7 pieces/ml) group were significantly higher than in the control group (P < 0.05). These findings suggest that CSE directly increases the contractile sensitivity of preterm myometrium in response to OT by upregulating the expression of OTR mRNA and thereby increases the risk of preterm delivery in women, who smoke during pregnancy.
Urinary oestradiol and testosterone levels from novel male mice approach values sufficient to disrupt early pregnancy in nearby inseminated females
Authors: deCatanzaro Denys , Beaton Elliott A , Khan Ayesha , Vella Emily
Published: August 2006

Previous research has established that exposure to novel male mice can disrupt intrauterine implantation of fertilised ova in inseminated females and that much of this effect is mediated by factors in the male urine. The present studies were designed to examine whether the steroid content of male urine is sufficient to account for this effect. Pregnancy was terminated by exogenous 17β-oestradiol administered intranasally on days 2–4 after insemination in doses as low as 0.14 μg/day. Enzyme immunoassay indicated that male mouse urine reliably contains unconjugated 17β-oestradiol and testosterone. A small but significant increase in the amount of urinary oestradiol was observed in males housed nearby previously inseminated females as opposed to those housed in isolation. This influence was absent in the sire and absent in novel males when the sire was also present. The quantity of active steroids in novel male urine approaches the level sufficient to account for the disruption of implantation in nearby inseminated females.
Imprinted gene expression in the rat embryo–fetal axis is altered in response to periconceptional maternal low protein diet
Authors: Kwong Wing Yee , Miller Daniel J , Ursell Elizabeth , Wild Arthur E , Wilkins Adrian P , Osmond Clive , Anthony Fred W , Fleming Tom P
Published: August 2006

In our previous study, we have shown that maternal low protein diet (LPD, 9% casein vs 18% casein control) fed exclusively during the rat preimplantation period (0–4.25 day postcoitum) induced low birth weight, altered postnatal growth and hypertension in a gender-specific manner. In this study, we investigated the effect of maternal LPD restricted only to the preimplantation period (switched diet) or provided throughout gestation on fetal growth and imprinted gene expression in blastocyst and fetal stages of development. Male, but not female, blastocysts collected from LPD dams displayed a significant reduction (30%) in H19 mRNA level. A significant reduction in H19 (9.4%) and Igf2 (10.9%) mRNA was also observed in male, but not in female, fetal liver at day 20 postcoitum in response to maternal LPD restricted to the preimplantation period. No effect on the blastocyst expression of Igf2R was observed in relation to maternal diet. The reduction in H19 mRNA expression did not correlate with an observed alteration in DNA methylation at the H19 differentially methylated region in fetal liver. In contrast, maternal LPD throughout 20 days of gestation did not affect male or female H19 and Igf2 imprinted gene expression in fetal liver. Neither LPD nor switched diet treatments affected H19 and Igf2 imprinted gene expression in day 20 placenta. Our findings demonstrate that one contributor to the alteration in postnatal growth induced by periconceptional maternal LPD may derive from a gender-specific programming of imprinted gene expression originating within the preimplantation embryo itself.
All in the family: TGF-β family action in testis development
Authors: Itman Catherine , Mendis Sirisha , Barakat Badia , Loveland Kate Lakoski
Published: August 2006

To achieve and maintain fertility, the adult mammalian testis produces many generations of sperm. While testicular integrity is established in the fetus and develops further in juvenile life, sperm production does not ensue until much later in life, following the onset of puberty. Signals from the transforming growth factor-β superfamily of proteins are vital for governance of testis development and spermatogenesis, and this review discusses our current understanding of the mechanisms and processes in which they have been implicated with a focus on the fetal and juvenile testis.
Leptin has concentration and stage-dependent effects on embryonic development in vitro
Authors: Herrid Muren , Nguyen Van Ly , Hinch Geoff , McFarlane James R
Published: August 2006

There is accumulating evidence that leptin may be directly involved in pre-implantation embryonic development, however, it is unclear whether there is a concentration and stage-dependent regulatory pattern. In this study, the addition of 10 ng/ml human recombinant leptin to the culture medium significantly increased the percentage of two-cell mouse embryos that developed into blastocysts and hatched blastocysts, whereas in the presence of 100 ng/ml leptin, the development rate was significantly inhibited. The total cell numbers in the hatched blastocysts were significantly higher in the presence of 10 ng/ml leptin compared with controls and higher concentrations. The differential sensitivity to leptin was found to vary among embryos at different stages of development. Supplementation of leptin (10 ng/ml) to culture medium at two- to eight-cell stages resulted in a consistent stimulatory effect on embryo development. Most interestingly, the inhibitory effect of high leptin concentration (100 ng/ml) on embryo development was diminished when it was added to the culture medium at the eight-cell stage of development. The concentration-dependent regulation pattern was confirmed using sheep embryos, under similar conditions although sheep embryos appeared to be more sensitive in responding to leptin. Having established the effect of exogenous leptin on embryo development, the expression pattern of leptin and its receptors were also investigated. Leptin mRNA was not detected in mouse two-, four-, eight-cell and blastocyst stage embryos, whereas three isoforms of leptin receptor (Ob-Ra, Ob-Rb and Ob-Re) were identified in these cells, indicating that leptin is likely to modulate embryo development via a paracrine signalling system.
Dual effect of transforming growth factor β1 on cell adhesion and invasion in human placenta trophoblast cells
Authors: Zhao Mei-rong , Qiu Wei , Li Yu-xia , Zhang Zhi-bin , Li Dong , Wang Yan-ling
Published: August 2006

Transforming growth factor β (TGFβ) has been shown to be a multifunctional cytokine required for embryonic development and regulation of trophoblast cell behaviors. In the present study, a non-transformed cell-line representative of normal human trophoblast (NPC) was used to examine the effect of TGFβ1 on trophoblast cell adhesion and invasion. In vitro assay showed that TGFβ1 could significantly promote intercellular adhesion, while inhibiting cell invasion across the collagen I-coated filter. Reverse transcription (RT)-PCR and gelatin zymography demonstrated that TGFβ1 evidently repressed the mRNA expression and proenzyme production of matrix metalloproteinase (MMP)-9, but exerted no effect on mRNA expression and secretion of MMP-2. On the other hand, both the mRNA and protein expression of epithelial-cadherin and β-catenin were obviously upregulated by TGFβ1 in dose-dependent fashion, as revealed by RT-PCR and western-blot analysis. What is more, one of the critical TGFβ signaling molecules – Smad2 was notably phosphorylated in TGFβ1-treated NPC cells. The data indicates that cell invasion and adhesion are coordinated processes in human trophoblasts and that there exists paracrine regulation on adhesion molecules and invasion-associated enzymes in human placenta.
Nuclear transfer reprogramming does not improve the low developmental potency of embryonic stem cells induced by long-term culture
Authors: Amano T , Gertsenstein M , Nagy A , Kurihara H , Suzuki H
Published: August 2006

Epigenetic states of embryonic stem (ES) cells are easily altered by long-term cultivation and lose their developmental potential. To rescue this reduced developmental capacity, nuclear transfer (NT) of ES cells was carried out, and original ES and ES cells from cloned blastocysts (ntES) cells established after NT were compared with in vitro differentiation ability and developmental potential by embryoid body formation and tetraploid aggregation respectively. In the establishment of ntES cell lines, the oocytes fused with the ES cell were activated, and further cultured to cloned blastocysts. When in vitro differentiation ability was examined between original and ntES cell lines derived from ES cells with extensive passages (ES-ep), the day of appearance of simple embryoid body, cystic embryoid body, and spontaneous beating was almost similar. The developmental rates of ES-ep cells, that aggregated with tetraploid embryos to term, ranged from 3 to 6%. Moreover, the majority of live pups died soon after birth. In the ntES cell lines derived from ES-ep cells, developmental rates ranged from 0 to 5%. Those pups also died soon after birth, similar to the ES-ep-derived pups. These results suggest that profound epigenetic modifications of ES cells were retained in the re-established cell lines by NT.
Changes in endocrine profile and reproductive organs during puberty in the male marmoset monkey (Callithrix jacchus)
Authors: Chandolia Ramesh K , Luetjens Craig Marc , Wistuba Joachim , Yeung Ching-Hei , Nieschlag Eberhard , Simoni Manuela
Published: August 2006

Data on pubertal maturation in male marmoset, a model for human reproduction, are scant and conflicting. We collected data on novel parameters to characterize puberty. Twenty-five marmoset monkeys were assigned to five age groups by weeks (wk): 21 (pre-pubertal), 43 (onset of puberty), 52 (fully pubertal), 70 (mature), and 116 (fully adult). Serum and intratesticular testosterone and pituitary bioactive chorionic gonadotropin (bioCG) were measured. Testicular development was assessed by ultrasonography, histology, and flow cytometry. Three consecutive blood samples revealed extreme fluctuations in testosterone concentrations, suggesting an erratic secretion. Age-related changes in serum testosterone and pituitary bioCG concentrations were observed. Intratesticular androgens (ITAs) showed high fluctuations within groups at all ages and were high in some animals by 21 wk. Unexpectedly, no correlation between pituitary bioCG and serum testosterone or ITAs was found, but these parameters significantly correlated with testicular weight and volume. These observations were consistent a dependence on the testis growth on bioCG. Unfortunately, the low serum levels of bioCG were not measurable in this study. At 43 wk, the animals reached puberty. At 52 wk of age, animals attained maximum body and epididymal weights and qualitatively normal spermatogenesis, but testes continued growing, reaching a maximum of all parameters at 70 wk of age, without further major changes at the age of 116 wk. It is concluded that (1) gonadal activation is evident at wk 21, (2) the male marmoset reaches the pubertal threshold around 43 wk of age, attains qualitative parameters at 52 wk, matures further to sexual maturity at 70 wk, and (3) serum testosterone and ITAs are highly variable without any identifiable correlation with pituitary bioCG.
Resistance to an imidazolinone herbicide is conferred by a gene on chromosome 6DL in the wheat line cv. 9804
Authors: Anderson James A. , Matthiesen Leanne , Hegstad Justin
Published: August 2006

An induced mutation of the common wheat (2n = 6x = 42, AABBDD genomes) cultivar ‘Fidel’ has been shown to provide resistance to the imidazolinone class of herbicides. This class of herbicide gives broad-spectrum weed control including the weedy relative of wheat, jointed goatgrass (2n = 4x = 28, CCDD genomes). Because wheat and jointed goatgrass share a common genome, genes present on the D genome may transfer between the two species as a result of natural hybridization and selective pressures. Our objectives were to determine which genome of common wheat contained the herbicide resistance gene in the mutated Fidel and to genetically map its position. We investigated the chromosomal location of this gene using both durum (2n = 4x = 28, AABB genomes) and common wheat (6x) backgrounds. From crosses of durum wheat genotypes as the recurrent parent with mutated Fidel (cv. 9804, resistant), only BC1plants containing chromosome 6D (inherited from cv. 9804) were resistant to applications of labeled rates of imazamox, an imidazolinone herbicide. No other D-genome chromosome was absolutely associated with herbicide resistance. To confirm this chromosomal location and genetically map the position of this gene, two populations of F3families from the cross of cv. 9804 to the common wheat cultivars ‘Cashup’ and ‘Madsen’ were screened for reaction to imazamox, followed by genetic mapping with microsatellite markers. Two linked microsatellite markers were associated with the resistance trait, and one of them,Xgdm127, was located to chromosome 6D using aneuploid stocks, confirming the location of this gene on 6D. These results indicate that this resistance gene is in the genome that common wheat shares with jointed goatgrass. Therefore, imidazolinone-resistant wheat will need to be carefully managed to minimize the occurrence and spread of resistant jointed goatgrass, whether such plants arise because of hybridization with resistant common wheat or by independent mutation, a frequent occurrence with this herbicide class.
Effect of tillage, fungicide seed treatment, and soil fumigation on seed bank dynamics of wild oat (Avena fatua)
Authors: Gallandt Eric R. , Fuerst E. Patrick , Kennedy Ann C.
Published: August 2006

No-tillage offers potential for improved soil quality, reduced erosion, and equal or increased crop yields. We hypothesized that, compared with conservation tillage (CT), no-tillage (NT) offers conditions more conducive to microbial decay of weed seed. In NT systems seed remain at or near the soil surface where crop residues, moisture, and lack of disturbance create an environment with greater soil microbial diversity. In late fall of 1998 and 1999, dormant seed of wild oat, either individually glued to plastic toothpicks or mixed with soil and placed in mesh bags, were buried (mean seed depth of 2.5 cm) in replicated field plots managed by NT or CT since 1982. Treatments including fungicide seed treatment (thiram + metalaxyl + captan) and soil fumigation (propylene oxide) provided estimates of the contribution of microorganisms to observed mortality. Seed were retrieved in May and August, 1999 and 2000. Contrary to our original hypothesis, the proportion of dead seed was generally similar in NT and CT systems. Lack of tillage system by seed or soil treatments affecting the proportion of dead or decayed seed suggests that the contribution of microorganisms to seed fate is similar in these tillage environments. However, the proportion of dormant seed was consistently lower in the NT compared with CT treatments; there was a corresponding increase in the proportion of germinated seed. Overall, more than half of the wild oat seed bank losses could be directly attributed to germination whereas losses due to decay were relatively minor by comparison. Despite favorable distribution of seed and improved quality of the surface-strata of soil in NT systems, this study fails to provide evidence that enhanced microbial decay will contribute to a “weed-suppressive” capacity in such cropping systems.
Information infrastructure for integrated ecohydraulic and water resources modeling and assessment
Authors: Wallace R. , Pathak K. , Fife M. , Jones N. L. , Holland J. P. , Stuart D. , Harris J. , Butler C. , Richards D. R.
Published: August 2006

Watershed management increasingly requires ecohydraulic modeling and assessment within a regional context, rather than on a project-by-project basis. Such holistic modeling and assessment require evaluation capabilities across multiple temporal and spatial scales. Thus, modeling and assessment tools must be integrated in a scientifically and computationally effective infrastructure. The US Army Engineer Research and Development Center, in concert with the Hydrologic Engineering Center and its academic partners, including Brigham Young University, is establishing a comprehensive set of hydroinformatics modeling and assessment tools for ecohydraulic and water resources management applications, all linked based on a common data and information infrastructure. This paper presents the attributes of this information infrastructure and compares it with the analogous integration initiatives elsewhere.
Hydroinformatics techniques in eco-environmental modelling and management
Authors: Chen Qiuwen , Morales-Chaves Yenory , Li Hong , Mynett Arthur E.
Published: August 2006

The high complexity of aquatic ecosystems and the multiple processes involved, make the development of ecohydraulics and eco-environmental models a challenging subject. Conventionally, computer-based models use a mathematical formulation for the processes involved which are then solved by numerical methods. These models are often derived based on the assumption of spatial homogeneity and conservation principles of mass, momentum and energy. Development of these models often demands a clear understanding of the processes involved. However, the above assumptions are easily violated when spatial heterogeneity, individual species behaviour and local interactions play a significant role in the system dynamics. In particular for eco-environmental systems, knowledge on local interactions that determine the overall system behaviour is not always available. Although the rapid advances of data-driven techniques have recently made great contributions to water-environment related research, data on ecosystems are often quite limited, which restricts the application of data mining methods to eco-environmental system modelling. In addition, no modelling – also not black-box modelling – can be undertaken without having at least some understanding of the basic processes and mechanisms involved. It is always advisable to start exploring any dataset using conventional statistical techniques, as elaborated in this paper for a case study on Western Xiamen Bay, China. Neural network trimming was then used to establish the dominant factors; it was shown that a relatively simple ANN model was quite capable of capturing the essential features, provided the right input parameters are chosen. Examples of integrated approaches to ecohydraulics modelling coupling formulations with cellular automata and physical equations with fuzzy rules are presented for applications on eutrophication modelling of Taihu Lake in China, competitive growths and colonization of two underwater macrophytes in Lake Veluwe in The Netherlands, and forecasting of algal blooms in the Dutch coastal waters on the North Sea. A mussel dynamics model developed for the Upper Mississippi River in the USA demonstrates the feasibility of individual based modelling in ecosystem dynamics. Numerical models are quite capable of simulating the abiotic aquatic environment, including complicated fluid flow and transport mechanisms. However, when it comes to simulating the biotic and ecosystem dynamics, the interaction of individual species with their environment, as well as the interactions amongst species, has to be taken into account. The future of ecohydraulics and eco-environmental modelling thus seems to lie in the integration of different paradigms and techniques, which is the core content of the hydroinformatics discipline.
Microbiological and structural aspects of granular sludge from autotrophic denitrifying reactors
Authors: Fernández N. , Gómez R. , Amils R. , Sierra-Alvarez R. , Field J.A. , Sanz J.L.
Published: August 2006

Denitrification is applied in the tertiary treatment of wastewater to reduce N-pollutants. Fluorescence in situ hybridisation (FISH), CARD (catalyzed reporter deposition)-FISH, cloning, and scanning electron microscopy (SEM) were applied to follow the evolution of the microbial composition and structure of granular sludge in autotrophic denitrifying bioreactors fed with nitrate and thiosulfate. With this goal, FISH oligonucleotide probes for the autotrophic denitrifiers, Thiobacillus denitrificans and Thiomicrospira denitrificans, were designed and their utility tested. CARD-FISH and cloning data showed that bacterial diversity changed with bioreactor operation time. After 110 days of operation, the abundance of Thiobacillus denitrificans cells increased considerably: from 1 to 35% of total DAPI-stained cells and from no isolated clones to 30% of the total positives clones. This fact strongly suggests that this microorganism played a dominant role in the autotrophic denitrification. The Archaeal diversity remained almost unchanged and it was mainly represented by Methanosaeta soehngenii. Scanning electron microscopy results indicated a considerable loss in the integrity of the sludge granules during the operation, with risk of sludge buoyancy.
Identification of mesophilic and thermophilic fermentative species in anaerobic granular sludge
Authors: Hernon F. , Forbes C. , Colleran E.
Published: August 2006

Large quantities of biodegradable food waste in the form of fruit and vegetables are still being deposited in landfill sites in Ireland. The development of an anaerobic digestion process using fermentative species which degrade the carbohydrate-rich waste could divert the food waste from landfills. We identified fermentative species grown on glucose and sucrose at mesophilic and thermophilic temperatures using molecular biology techniques. The dominating fermentative bacteria of the mesophilic sludge were of the Bacteroidetes and Spirochaetes classes. Although both groups of bacteria are typically fermentative their substrate range appears to be limited. The dominating fermentative bacteria in the thermophilic sludge was Thermoanaerobacterium aotearoense of the Clostridia class. The indications are that Thermoanaerobacterium aotearoense may be highly suitable to biodegrade a carbohydrate-rich influent feed due to its possibly very rapid growth rate and also an extensive substrate range.
Effect of addition of an exogenous exopolymeric substance in UASB and EGSB reactors
Authors: Vivanco E. , Puñal A. , Chamy R.
Published: August 2006

The operation of two different reactor configurations (UASB and EGSB), while treating medium and low concentrated wastewater (MCW and LCW, respectively), was studied. The MCW (5 g COD/l) was initially supplied for reactor start up and granule maturation, being subsequently changed to the LCW (0.5 g COD/l), with which led the reactors to an unstable state associated with the deterioration of granule characteristics, in terms of extracellular polymeric substances (EPS) content and composition. The addition of pectin as an exogenous EPS was considered as a way to directly act on granule characteristics and its effect was studied by monitoring the operational parameters as well as by following the EPS content and composition within granules and the dynamics of microbial populations. The effect of adding pectin led to a significant recuperation of the operational performance in both reactors, associated with the increase in Archaea relative abundance, this likely related to the major presence of Methanosaeta-like microorganisms in granules with higher activity and stability.
Detection of fatty acid beta-oxidizing syntrophic bacteria by fluorescence in situ hybridization
Authors: Menes R.J. , Travers D.
Published: August 2006

A new 16S rRNA-targeted oligonucleotide probe, specific for the cluster of fatty acid β-oxidizing syntrophic bacteria of the family Syntrophomonadaceae was designed for fluorescence in situ hybridization. This probe was evaluated with target as well as non-target cultures. Moreover this probe was assessed with butyrate and oleate degrading enrichment cultures and methanogenic sludges from full-scale plants. The results showed that the probe revealed the presence of fatty acid β-oxidizing syntrophic bacteria in some of the samples analyzed. However, cell quantification was possible only in enrichment cultures and in a flocculent sludge from a reactor that treats lipid-rich wastewaters, but not in methanogenic granular sludges from upflow anaerobic sludge blanket reactors.
Kinetics of anaerobic biodecolourisation of azo dyes
Authors: Kalyuzhnyi S. , Yemashova N. , Fedorovich V.
Published: August 2006

Kinetics of anaerobic biodecolourisation (methanogenic environment) of four azo dyes (Acid Orange 6, Acid Orange 7, Methyl Orange and Methyl Red) was investigated with regard to their electrochemical properties as well as under variation of dye and sludge concentrations, pH and temperature. Cyclic voltammetry revealed a correlation between the potential of irreversible reduction peak of the dye and its first-order decolorisation constant. For each dye tested, this decolourisation constant was adversely proportional to dye concentration (0.086–1.7 mM) and had a saturation (hyperbolic) dependency on sludge concentration (0.04–1.1 g VSS/l), a bell-shape dependency on pH (4.0–9.0) and Arrhenius dependency on temperature (24–40 °C). Transfer from methanogenic to sulphate reducing environment led to an increase of decolorisation constant for all the dyes investigated due to the abundant presence of sulphide as a reducing agent in the reaction medium. Similar transfer to a denitrifying environment resulted in an almost complete decease of decolourisation because nitrate easily outcompetes azo dyes as an electron acceptor.
Innovative conception and performance evaluation of a compact on-site treatment system
Authors: Sousa V.P. , Chernicharo C.A.L.
Published: August 2006

The purpose of this study was to develop a new configuration for a compact on-site treatment system, which could become an attractive alternative, from technical, economic, social and environmental viewpoints, to the technologies that are currently employed. The treatment unit consists of a cylindrical tank, where half of the volume is used as a modified septic tank and the other half is divided between an anaerobic hybrid reactor and a trickling filter. An intermittent feeding system was used, with minimum, mean and maximum flowrate settings (Qmin=0.25 l.s−1, Qmean=0.50 l.s−1 and Qmax=1.00 l.s−1), to reflect the actual operating conditions of a compact on-site treatment system serving a typical dwelling. An average 24-hour hydraulic detention time was used, corresponding to a flowrate of 750 l.d−1. High removal efficiencies and low concentrations of COD, BOD and TSS in the final effluent were achieved, even when the unit was exposed to hydraulic loading peaks during feeding periods at maximum flowrate.
Automated manometric method to assess anaerobic toxicity of chemicals
Authors: Fdz-Polanco F. , Nieto P. , Pérez-Elvira S.I. , Fdz-Polanco M.
Published: August 2006

Industrial additives eventually used for different purposes (antifoaming, cleaning, bactericides, antiscale, etc) are discharged to the wastewater treatment plant. The anaerobic toxicity of these commercial products is not provided by suppliers. A new manometric method is developed and tested to evaluate anaerobic toxicity or inhibition using four different commercial products. Antifoaming Cleron 6 (50–200 ppm), bactericide Divosan-forte (0.05–1.0% v/v), bleach (0.1–1.0% v/v) and cleaning agent Topax 66 (0.10–1.0% v/v). According to the different methods proposed in the literature, from the methane production rate, it is possible to calculate both methanogenic activity evolution and final substrate removal and quantify the potential inhibitory effect of commercial additives. The experimental method is simple and reliable.
Intermittent vs continuous operation of upflow anaerobic sludge bed reactors for dairy wastewater and related microbial changes
Authors: Nadais H. , Capela I. , Arroja L.
Published: August 2006

This work compares continuous vs intermittent UASB reactors inoculated with flocculent sludge for the treatment of dairy effluents. The effects of effluent recirculation on the performance of intermittent reactors were assessed as well as the differences in specific methanogenic activity (SMA) with different substrates for the biomass from continuous and intermittent UASB reactors. Compared to the continuous operation the intermittent operation resulted in higher methanization of the removed COD (64–78% and 65–88%, respectively) whilst the effluent recirculation presented beneficial effects when applied during the stabilization period and was clearly detrimental when applied during the feed period of the intermittent operation. The SMA tests showed that the intermittent operation causes a shift in the microbial populations towards a better adaptation for the degradation of complex substrates confirmed by the meaningfull contribution of methane production through a pathway other than acetoclastic methanogenesis observed in the biomass taken from intermittent UASB reactors.
Simultaneous removal of carbon and nitrogen in an anaerobic inverse fluidized bed reactor
Authors: Alvarado-Lassman A. , Rustrián E. , García-Alvarado M.A. , Houbron E.
Published: August 2006

The evaluation of simultaneous removal of carbon and nitrogen in an anaerobic inverse fluidized bed reactor is described. Continuous and batch experiments were used, with synthetic wastewater and glucose as the carbon source with two different nitrate concentrations of 100 and 250 mg N-NO3/L. The evolution of substrates and the concentrations of intermediary products in the gas phase were followed. Results indicate that the use of the biofilm in the inverse fluidized bed reactor allows the expression of denitrification and methanization activities simultaneously without physical or time separation. The removal of nitrogen with both the feeding of 100 and 250 mgN-NO3/L was higher than 90%, while the removal of carbon was 65% on average for the feeding with 100 mgN-NO3/L and 70% on average for the feeding with 250 mg N-NO3/L. This carbon degradation is equivalent to that obtained during the operation of the reactor in the period previous to the nitrate feeding. It was found that by using high values of the COD/N ratio, the dissimilative reduction of nitrates is favoured. Denitrification and anaerobic digestion occurs simultaneously under low values of COD/N.