bluuebunny/crossref_metadata_2025 huggingface dataset:
Supplementary Figure 5 from Bone Metastasis of Prostate Cancer Can Be Therapeutically Targeted at the TBX2–WNT Signaling Axis
Authors: Nandana Srinivas , Tripathi Manisha , Duan Peng , Chu Chia-Yi , Mishra Rajeev , Liu Chunyan , Jin Renjie , Yamashita Hironobu , Zayzafoon Majd , Bhowmick Neil A. , Zhau Haiyen E. , Matusik Robert J. , Chung Leland W.K.
Published: March 2023

Invasion assay of PC3 (TBX2DN+WNT3A, TBX2DN, and Neo)cells with the addition of SFRP-2
Supplementary Figure Legends from Gastric Cancer Cell Proliferation and Survival Is Enabled by a Cyclophilin B/STAT3/miR-520d-5p Signaling Feedback Loop
Authors: Li Ting , Guo Hanqing , Zhao Xiaodi , Jin Jiang , Zhang Lifeng , Li Hong , Lu Yuanyuan , Nie Yongzhan , Wu Kaichun , Shi Yongquan , Fan Daiming
Published: March 2023

Supplementary Figure Legends
Supplemental Table 1 from Armed Oncolytic Adenovirus–Expressing PD-L1 Mini-Body Enhances Antitumor Effects of Chimeric Antigen Receptor T Cells in Solid Tumors
Authors: Tanoue Kiyonori , Rosewell Shaw Amanda , Watanabe Norihiro , Porter Caroline , Rana Bhakti , Gottschalk Stephen , Brenner Malcolm , Suzuki Masataka
Published: March 2023

LD50 of Onc.Ad, HDAd or CAd-VEC in each cell line.
Tables S3 and S4 from Protein Acyltransferase DHHC3 Regulates Breast Tumor Growth, Oxidative Stress, and Senescence
Authors: Sharma Chandan , Wang Hong-Xing , Li Qinglin , Knoblich Konstantin , Reisenbichler Emily S. , Richardson Andrea L. , Hemler Martin E.
Published: March 2023

Genes, relevant to oxidative stress, senescence, or ER stress, which are altered due to DHHC3 ablation. Supplemental references, applicable to these tables, are also included.
Supplementary Table S2 from Long Noncoding RNA LINC00092 Acts in Cancer-Associated Fibroblasts to Drive Glycolysis and Progression of Ovarian Cancer
Authors: Zhao Linjie , Ji Gaili , Le Xiaobing , Wang Chenlu , Xu Lian , Feng Min , Zhang Yaguang , Yang Huiliang , Xuan Yu , Yang Yanfei , Lei Lingzi , Yang Qilian , Lau Wayne Bond , Lau Bonnie , Chen Yi , Deng Xiangbing , Yao Shaohua , Yi Tao , Zhao Xia , Wei Yuquan , Zhou Shengtao
Published: March 2023

Primers for RT-PCR.
Supplemental Table S1 from RelB Expression Determines the Differential Effects of Ascorbic Acid in Normal and Cancer Cells
Authors: Wei Xiaowei , Xu Yong , Xu Fang Fang , Chaiswing Luksana , Schnell David , Noel Teresa , Wang Chi , Chen Jinfei , St. Clair Daret K. , St. Clair William H.
Published: March 2023

Mutually exclusive CIs for the AA-IR combined treatment for PC3 cells and PZ cells at indicated doses.
Supplementary Fig. 1 from A Novel Mouse Model to Study Image-Guided, Radiation-Induced Intestinal Injury and Preclinical Screening of Radioprotectors
Authors: Verginadis Ioannis I. , Kanade Rahul , Bell Brett , Koduri Sravya , Ben-Josef Edgar , Koumenis Constantinos
Published: March 2023

Supplementary Fig. 1 - Cone beam CT images showing the implanted radiopaque marker.
Figure S2 from Zeb1 in Stromal Myofibroblasts Promotes Kras-Driven Development of Pancreatic Cancer
Authors: Sangrador Irene , Molero Xavier , Campbell Fiona , Franch-Expósito Sebastià , Rovira-Rigau Maria , Samper Esther , Domínguez-Fraile Manuel , Fillat Cristina , Castells Antoni , Vaquero Eva C.
Published: March 2023

Zeb1 expression in transformed pancreata of KPC;Z+/+ and KPC;Z+/-
Supplementary Figures S1-S3 from Bone Marrow Adipocytes Facilitate Fatty Acid Oxidation Activating AMPK and a Transcriptional Network Supporting Survival of Acute Monocytic Leukemia Cells
Authors: Tabe Yoko , Yamamoto Shinichi , Saitoh Kaori , Sekihara Kazumasa , Monma Norikazu , Ikeo Kazuho , Mogushi Kaoru , Shikami Masato , Ruvolo Vivian , Ishizawa Jo , Hail Numsen , Kazuno Saiko , Igarashi Mamoru , Matsushita Hiromichi , Yamanaka Yasunari , Arai Hajime , Nagaoka Isao , Miida Takashi , Hayashizaki Yoshihide , Konopleva Marina , Andreeff Michael
Published: March 2023

Co-culture with MSC-derived BM-adipocytes inhibits spontaneous apoptosis of primary AMoL cells (S1); Co-culture with BM adipocytes activates p38MAPK cascade and protein folding in AMoL cells (S2); Network of proteins involved in the effects of BM-adipocyte co-culture in U937 cells (S3).
Figure S3 from New Generation Nanomedicines Constructed from Self-Assembling Small-Molecule Prodrugs Alleviate Cancer Drug Toxicity
Authors: Wang Hangxiang , Lu Zhongjie , Wang Lijiang , Guo Tingting , Wu Jiaping , Wan Jianqin , Zhou Liqian , Li Hui , Li Zhen , Jiang Donghai , Song Penghong , Xie Haiyang , Zhou Lin , Xu Xiao , Zheng Shusen
Published: March 2023

Hydrolysis of prodrugs under different conditions analyzed by HPLC
Figure S1 from New Generation Nanomedicines Constructed from Self-Assembling Small-Molecule Prodrugs Alleviate Cancer Drug Toxicity
Authors: Wang Hangxiang , Lu Zhongjie , Wang Lijiang , Guo Tingting , Wu Jiaping , Wan Jianqin , Zhou Liqian , Li Hui , Li Zhen , Jiang Donghai , Song Penghong , Xie Haiyang , Zhou Lin , Xu Xiao , Zheng Shusen
Published: March 2023

The morphology of SNMs and PEGylated SNMs determined by TEM and DLS
Supplemental Figure 2 from Selective Reversible Inhibition of Autophagy in Hypoxic Breast Cancer Cells Promotes Pulmonary Metastasis
Authors: Dower Christopher M. , Bhat Neema , Wang Edward W. , Wang Hong-Gang
Published: March 2023

Immunohistochemical analysis of lung and liver metastasis
Supplemental File 1 from Integrated Analysis of Whole-Genome ChIP-Seq and RNA-Seq Data of Primary Head and Neck Tumor Samples Associates HPV Integration Sites with Open Chromatin Marks
Authors: Kelley Dylan Z. , Flam Emily L. , Izumchenko Evgeny , Danilova Ludmila V. , Wulf Hildegard A. , Guo Theresa , Singman Dzov A. , Afsari Bahman , Skaist Alyza M. , Considine Michael , Welch Jane A. , Stavrovskaya Elena , Bishop Justin A. , Westra William H. , Khan Zubair , Koch Wayne M. , Sidransky David , Wheelan Sarah J. , Califano Joseph A. , Favorov Alexander V. , Fertig Elana J. , Gaykalova Daria A.
Published: March 2023

DiffBind script
Supplemental Figures S1-S15 from Integrated Analysis of Whole-Genome ChIP-Seq and RNA-Seq Data of Primary Head and Neck Tumor Samples Associates HPV Integration Sites with Open Chromatin Marks
Authors: Kelley Dylan Z. , Flam Emily L. , Izumchenko Evgeny , Danilova Ludmila V. , Wulf Hildegard A. , Guo Theresa , Singman Dzov A. , Afsari Bahman , Skaist Alyza M. , Considine Michael , Welch Jane A. , Stavrovskaya Elena , Bishop Justin A. , Westra William H. , Khan Zubair , Koch Wayne M. , Sidransky David , Wheelan Sarah J. , Califano Joseph A. , Favorov Alexander V. , Fertig Elana J. , Gaykalova Daria A.
Published: March 2023

Figure S1. Experimental Figure Scheme. Figure S2. ChIP-Seq quality assessment for different samples and histone marks. Figure S3. Comparable ChIP-Seq and ChIP-qRT-PCR detection of histone enrichment for different histone marks near three reference genes. Figure S4. Comparable expression of reference genes. Figure S5. H3K9ac histone mark enrichment distribution near transcription start sites. Figure S6. H3K27ac histone mark enrichment distribution near transcription start sites. Figure S7. H3K9me3 histone mark enrichment distribution near transcription start sites. Figure S8. Correlation between tissue specific H3K9ac histone peak enrichment and expression of nearby genes. Figure S9. Correlation between tissue specific H3K9me3 histone peak enrichment and expression of nearby genes. Figure S10. Correlation between tissue specific H3K4me3 histone peak enrichment and expression of nearby genes for six study samples and two PDX-parental tissues. Figure S11. Correlation between tissue specific H3K27ac histone peak enrichment and expression of nearby genes for six study samples and two PDX-parental tissues. Figure S12. Correlation between tissue specific H3K9ac histone peak enrichment and expression of nearby genes for six study samples and two PDX-parental tissues. Figure S13. Correlation between tissue specific H3K9me3 histone peak enrichment and expression of nearby genes for six study samples and two PDX-parental tissues. Figure S14. Scheme for integration of ChIP-Seq Specific Histone Peaks with Expression Variation Analysis (EVA). Figure S15. Correlation of H3K27ac-enriched with genes differentially regulated in mesenchymal and classical HPV+ HNSCC subtypes.
Supplementary Materials and Methods from WNT/β-Catenin Directs Self-Renewal Symmetric Cell Division of hTERThigh Prostate Cancer Stem Cells
Authors: Zhang Kai , Guo Yanjing , Wang Xue , Zhao Huifang , Ji Zhongzhong , Cheng Chaping , Li Li , Fang Yuxiang , Xu Dawei , Zhu Helen He , Gao Wei-Qiang
Published: March 2023

Supplementary Materials and Methods
Figure S2 from Kindlin-1 Promotes Pulmonary Breast Cancer Metastasis
Authors: Sarvi Sana , Patel Hitesh , Li Jun , Dodd Georgia L. , Creedon Helen , Muir Morwenna , Ward Jocelyn , Dawson John C. , Lee Martin , Culley Jayne , Salter Donald M. , Sims Andrew H. , Byron Adam , Brunton Valerie G.
Published: March 2023

Figure S2 shows that Kindlin-1 loss is associated with reduced tumor onset and survival associated with reduced integrin activation
Supplementary Data from Investigating Low-Velocity Fluid Flow in Tumors with Convection-MRI
Authors: Walker-Samuel Simon , Roberts Thomas A. , Ramasawmy Rajiv , Burrell Jake S. , Johnson Sean Peter , Siow Bernard M. , Richardson Simon , Gonçalves Miguel R. , Pendse Douglas , Robinson Simon P. , Pedley R. Barbara , Lythgoe Mark F.
Published: March 2023

Additional data describing the reproducibility of convectionMRI data, and a figure showing the convectionMRI acquisition sequence.
Supplementary Figures and Tables from XIAP Regulation by MNK Links MAPK and NFκB Signaling to Determine an Aggressive Breast Cancer Phenotype
Authors: Evans Myron K. , Brown Michael C. , Geradts Joseph , Bao Xuhui , Robinson Timothy J. , Jolly Mohit Kumar , Vermeulen Peter B. , Palmer Gregory M. , Gromeier Matthias , Levine Herbert , Morse Michael A. , Van Laere Steven J. , Devi Gayathri R.
Published: March 2023

Primers used in this study, alignment of probesets used for detection of XIAP expression on XIAP mRNA, GSEA network graphic of XIAP-dependent mRNA expression, heat maps of genes positively and negatively correlated with XIAP expression, and analysis of in vivo tumor tissue from xenograft studies.
Figure S3 from Type I IFN Receptor Signaling Controls IL7-Dependent Accumulation and Activity of Protumoral IL17A-Producing γδT Cells in Breast Cancer
Authors: Patin Emmanuel C. , Soulard Daphnée , Fleury Sébastien , Hassane Maya , Dombrowicz David , Faveeuw Christelle , Trottein François , Paget Christophe
Published: March 2023

gamma/delta T cells represent the major source of IL-17A in 4T1.2 breast cancer tumors
Figure S1 from Membrane-Depolarizing Channel Blockers Induce Selective Glioma Cell Death by Impairing Nutrient Transport and Unfolded Protein/Amino Acid Responses
Authors: Niklasson Mia , Maddalo Gianluca , Sramkova Zuzana , Mutlu Ercan , Wee Shimei , Sekyrova Petra , Schmidt Linnéa , Fritz Nicolas , Dehnisch Ivar , Kyriatzis Gregorios , Krafcikova Michaela , Carson Brittany B. , Feenstra Jennifer M. , Marinescu Voichita D. , Segerman Anna , Haraldsson Martin , Gustavsson Anna-Lena , Hammarström Lars G.J. , Jenmalm Jensen Annika , Uhrbom Lene , Altelaar A.F. Maarten , Linnarsson Sten , Uhlén Per , Trantirek Lukas , Vincent C. Theresa , Nelander Sven , Enger Per Øyvind , Andäng Michael
Published: March 2023

Supplementary drug screen data
Table S5 from Antitumor Properties of RAF709, a Highly Selective and Potent Inhibitor of RAF Kinase Dimers, in Tumors Driven by Mutant RAS or BRAF
Authors: Shao Wenlin , Mishina Yuji M. , Feng Yun , Caponigro Giordano , Cooke Vesselina G. , Rivera Stacy , Wang Yingyun , Shen Fang , Korn Joshua M. , Mathews Griner Lesley A. , Nishiguchi Gisele , Rico Alice , Tellew John , Haling Jacob R. , Aversa Robert , Polyakov Valery , Zang Richard , Hekmat-Nejad Mohammad , Amiri Payman , Singh Mallika , Keen Nicholas , Dillon Michael P. , Lees Emma , Ramurthy Savithri , Sellers William R. , Stuart Darrin D.
Published: March 2023

Antiproliferative effect of RAF709 compared to dabrafenib, trametinib, RAF265 and sorafenib across a tumor cell panel
Table S2 from Antitumor Properties of RAF709, a Highly Selective and Potent Inhibitor of RAF Kinase Dimers, in Tumors Driven by Mutant RAS or BRAF
Authors: Shao Wenlin , Mishina Yuji M. , Feng Yun , Caponigro Giordano , Cooke Vesselina G. , Rivera Stacy , Wang Yingyun , Shen Fang , Korn Joshua M. , Mathews Griner Lesley A. , Nishiguchi Gisele , Rico Alice , Tellew John , Haling Jacob R. , Aversa Robert , Polyakov Valery , Zang Richard , Hekmat-Nejad Mohammad , Amiri Payman , Singh Mallika , Keen Nicholas , Dillon Michael P. , Lees Emma , Ramurthy Savithri , Sellers William R. , Stuart Darrin D.
Published: March 2023

KINOMEScan assay results for RAF709
Supplemental Table S5 from Tight Junction Protein Claudin-2 Promotes Self-Renewal of Human Colorectal Cancer Stem-like Cells
Authors: Paquet-Fifield Sophie , Koh Shir Lin , Cheng Lesley , Beyit Laura M. , Shembrey Carolyn , Mølck Christina , Behrenbruch Corina , Papin Marina , Gironella Meritxell , Guelfi Sophie , Nasr Ramona , Grillet Fanny , Prudhomme Michel , Bourgaux Jean-Francois , Castells Antoni , Pascussi Jean-Marc , Heriot Alexander G. , Puisieux Alain , Davis Melissa J. , Pannequin Julie , Hill Andrew F. , Sloan Erica K. , Hollande Frédéric
Published: March 2023

This table contains identified self-renewal target genes for the three candidate miRNA experimentally tested in our study, along with their prediction score. Only those targets with prediction score >0.85 are included.
Supplemental Figures S1 to S5 from Rho Kinase Inhibition by AT13148 Blocks Pancreatic Ductal Adenocarcinoma Invasion and Tumor Growth
Authors: Rath Nicola , Munro June , Cutiongco Marie Francene , Jagiełło Alicja , Gadegaard Nikolaj , McGarry Lynn , Unbekandt Mathieu , Michalopoulou Evdokia , Kamphorst Jurre J. , Sumpton David , Mackay Gillian , Vennin Claire , Pajic Marina , Timpson Paul , Olson Michael F.
Published: March 2023

Supplemental Figure S1. No effect of ROCK inhibitors on the expression of ROCK1 or ROCK2. Supplemental Figure S2. ROCK1 and ROCK2 knockdown, dose-response relationships and IC50 determinations for AT13148 on cell morphology parameters. Supplemental Figure S3. Dose-response relationships for AT13148 on nuclear morphology parameters. Supplemental Figure S4. No effect of ROCK inhibitor treatment on mouse weights. Supplemental Figure S5. AT13148 blocks PDAC tumor growth in vivo.
Supplemental Table S1 from Tight Junction Protein Claudin-2 Promotes Self-Renewal of Human Colorectal Cancer Stem-like Cells
Authors: Paquet-Fifield Sophie , Koh Shir Lin , Cheng Lesley , Beyit Laura M. , Shembrey Carolyn , Mølck Christina , Behrenbruch Corina , Papin Marina , Gironella Meritxell , Guelfi Sophie , Nasr Ramona , Grillet Fanny , Prudhomme Michel , Bourgaux Jean-Francois , Castells Antoni , Pascussi Jean-Marc , Heriot Alexander G. , Puisieux Alain , Davis Melissa J. , Pannequin Julie , Hill Andrew F. , Sloan Erica K. , Hollande Frédéric
Published: March 2023

This table contains the sequence of all primers used for qPCR, of siren and shRNAs against claudin-2, as well as details about miRNA mimics and inhibitors used in this work.
Supplemental Methods from Bayesian Network Inference Modeling Identifies TRIB1 as a Novel Regulator of Cell-Cycle Progression and Survival in Cancer Cells
Authors: Gendelman Rina , Xing Heming , Mirzoeva Olga K. , Sarde Preeti , Curtis Christina , Feiler Heidi S. , McDonagh Paul , Gray Joe W. , Khalil Iya , Korn W. Michael
Published: March 2023

Methods for Real-Time Quantitative RT-PCR, Assessment of medal accuracy, Gene expression, copy number and survival analysis,
Fig. S4 from Reciprocal Regulation of DUSP9 and DUSP16 Expression by HIF1 Controls ERK and p38 MAP Kinase Activity and Mediates Chemotherapy-Induced Breast Cancer Stem Cell Enrichment
Authors: Lu Haiquan , Tran Linh , Park Youngrok , Chen Ivan , Lan Jie , Xie Yangyiran , Semenza Gregg L.
Published: March 2023

DUSP9 and DUSP16 reciprocally regulate the breast cancer stem cell phenotype.
Supplementary Figure 1 from MVisAGe Identifies Concordant and Discordant Genomic Alterations of Driver Genes in Squamous Tumors
Authors: Walter Vonn , Du Ying , Danilova Ludmila , Hayward Michele C. , Hayes D. Neil
Published: March 2023

Distributions of DNA copy number/gene expression Pearson correlation coefficients in three squamous tumors.
Figure S6 from Combined Mutation of Apc, Kras, and Tgfbr2 Effectively Drives Metastasis of Intestinal Cancer
Authors: Sakai Eri , Nakayama Mizuho , Oshima Hiroko , Kouyama Yuta , Niida Atsushi , Fujii Satoshi , Ochiai Atsushi , Nakayama Keiichi I. , Mimori Koshi , Suzuki Yutaka , Hong Chang Pyo , Ock Chan-Young , Kim Seong-Jin , Oshima Masanobu
Published: March 2023

Submucosal tumors of transplanted AK organoids
Table S2 from Licofelone Enhances the Efficacy of Paclitaxel in Ovarian Cancer by Reversing Drug Resistance and Tumor Stem-like Properties
Authors: Hirst Jeff , Pathak Harsh B. , Hyter Stephen , Pessetto Ziyan Y. , Ly Thuc , Graw Stefan , Koestler Devin C. , Krieg Adam J. , Roby Katherine F. , Godwin Andrew K.
Published: March 2023

Genetic alterations and response to licofelone or glafenine in ovarian MCTS.
Figure S9 from Expression of Adipocyte/Macrophage Fatty Acid–Binding Protein in Tumor-Associated Macrophages Promotes Breast Cancer Progression
Authors: Hao Jiaqing , Yan Fei , Zhang Yuwen , Triplett Ashley , Zhang Ying , Schultz Debra A. , Sun Yanwen , Zeng Jun , Silverstein Kevin A.T. , Zheng Qi , Bernlohr David A. , Cleary Margot P. , Egilmez Nejat K. , Sauter Edward , Liu Shujun , Suttles Jill , Li Bing
Published: March 2023

Figure S9 summarizes A-FABP as a new functional marker for pro-tumor macrophages.
Figure S1 from Discovery of Human-Similar Gene Fusions in Canine Cancers
Authors: Ulvé Ronan , Rault Mélanie , Bahin Mathieu , Lagoutte Laetitia , Abadie Jérôme , De Brito Clotilde , Coindre Jean-Michel , Botherel Nadine , Rousseau Audrey , Wucher Valentin , Cadieu Edouard , Thieblemont Catherine , Hitte Christophe , Cornevin Laurence , Cabillic Florian , Bachelot Laura , Gilot David , Hennuy Benoit , Guillaudeux Thierry , Le Goff Arnaud , Derrien Thomas , Hédan Benoît , André Catherine
Published: March 2023

Characterization of the canine dermatofibrosarcoma protuberans-like.
Supplementary Data 7 from Inhibition of EphB4–Ephrin-B2 Signaling Reprograms the Tumor Immune Microenvironment in Head and Neck Cancers
Authors: Bhatia Shilpa , Oweida Ayman , Lennon Shelby , Darragh Laurel B. , Milner Dallin , Phan Andy V. , Mueller Adam C. , Van Court Benjamin , Raben David , Serkova Natalie J. , Wang Xiao-Jing , Jimeno Antonio , Clambey Eric T. , Pasquale Elena B. , Karam Sana D.
Published: March 2023

Blockade of EphB4-ephrin-B2 interaction combined with RT suppresses tumor growth in HNSCC tumors
Supplemental Figure Legends from Cross-talk Signaling between HER3 and HPV16 E6 and E7 Mediates Resistance to PI3K Inhibitors in Head and Neck Cancer
Authors: Brand Toni M. , Hartmann Stefan , Bhola Neil E. , Li Hua , Zeng Yan , O'Keefe Rachel A. , Ranall Max V. , Bandyopadhyay Sourav , Soucheray Margaret , Krogan Nevan J. , Kemp Carolyn , Duvvuri Umamaheswar , LaVallee Theresa , Johnson Daniel E. , Ozbun Michelle A. , Bauman Julie E. , Grandis Jennifer R.
Published: March 2023

Legend for supplemental figures
Supplementary Table 4 from Temozolomide Treatment Induces lncRNA MALAT1 in an NF-κB and p53 Codependent Manner in Glioblastoma
Authors: Voce David J. , Bernal Giovanna M. , Wu Longtao , Crawley Clayton D. , Zhang Wei , Mansour Nassir M. , Cahill Kirk E. , Szymura Szymon J. , Uppal Abhineet , Raleigh David R. , Spretz Ruben , Nunez Luis , Larsen Gustavo , Khodarev Nikolai N. , Weichselbaum Ralph R. , Yamini Bakhtiar
Published: March 2023

Table of significantly altered genes from sh-control cells with a FDR < 0.01
Video 1 from Computational Radiomics System to Decode the Radiographic Phenotype
Authors: van Griethuysen Joost J.M. , Fedorov Andriy , Parmar Chintan , Hosny Ahmed , Aucoin Nicole , Narayan Vivek , Beets-Tan Regina G.H. , Fillion-Robin Jean-Christophe , Pieper Steve , Aerts Hugo J.W.L.
Published: March 2023

High level Movie describing the concept of radiomics.io, and, pyradiomics in
Supplementary data file from The Endosomal Protein CEMIP Links WNT Signaling to MEK1–ERK1/2 Activation in Selumetinib-Resistant Intestinal Organoids
Authors: Duong Hong Quan , Nemazanyy Ivan , Rambow Florian , Tang Seng Chuan , Delaunay Sylvain , Tharun Lars , Florin Alexandra , Büttner Reinhard , Vandaele Daniel , Close Pierre , Marine Jean-Christophe , Shostak Kateryna , Chariot Alain
Published: March 2023

Figure S1. Selumetinib-resistant organoids show elevated mRNA levels of CEMIP but not Myc. Figure S2. CEMIP controls the expression of genes candidates linked to ErbB, RAS and LEF1 signaling and identification of upstream regulators of CEMIP. Figure S3. CEMIP is required for the maintenance of ex-vivo organoid cultures showing constitutive Wnt signaling. Figure S4. CEMIP promotes the acquired resistance to MEK1 inhibition in colon cancer cells. Figure S5. Ectopic expression of CEMIP in colon cancer cells enhances pERK1/2 and Myc levels and protects from cell death upon MEK1 inhibition. Figure S6. Acquisition of Selumetinib resistance in BRAFV600E-mutated colorectal cancer cells decreases E-cadherin levels and induces the nuclear expression of p65 and FRA-1. Figure S7. FRA-1 controls CEMIP expression in Selumetinib-resistant colon cancer cells. Figure S8. Vemurafenib decreases CEMIP expression in Selumetinib-resistant colon cancer cells. Figure S9. CEMIP expression is regulated by TCF4 in Selumetinib-resistant colon cancer cells. Figure S10. Generation of KRASG13D or G12A-mutated colon cancer cells showing some acquired resistance to Selumetinib. Figure S11. CEMIP promotes the acquired resistance to Selumetinib in BRAFV600E-mutated colorectal cancer cells. Figure S12. pERK1/2 levels decrease after a short treatment with Selumetinib but increase again after 24 hours of MEK1 inhibition and CEMIP contributes to MEK1-dependent ERK1/2 activation. Figure S13. Resistant BRAFV600E-mutated colorectal cancer cells with acquired resistance to MEK1 inhibition show more BRAF dimers. Figure S14. Myc deficiency mimicks CEMIP deficiency in Selumetinib-resistant ex-vivo organoids. Supplementary Table 1 is a list of all antibodies used in this study.
Supplementary Methods and Materials from HORMAD1 Is a Negative Prognostic Indicator in Lung Adenocarcinoma and Specifies Resistance to Oxidative and Genotoxic Stress
Authors: Nichols Brandt A. , Oswald Nathaniel W. , McMillan Elizabeth A. , McGlynn Kathleen , Yan Jingsheng , Kim Min S. , Saha Janapriya , Mallipeddi Prema L. , LaDuke Sydnie A. , Villalobos Pamela A. , Rodriguez-Canales Jaime , Wistuba Ignacio I. , Posner Bruce A. , Davis Anthony J. , Minna John D. , MacMillan John B. , Whitehurst Angelique W.
Published: March 2023

More detailed methods for the Natural Product Library Generation, Natural Product Cytotoxicity Screens, Purification and Characterization of HORMAD1
Supplementary Figures S1-8 from SPON2 Promotes M1-like Macrophage Recruitment and Inhibits Hepatocellular Carcinoma Metastasis by Distinct Integrin–Rho GTPase–Hippo Pathways
Authors: Zhang Yan-Li , Li Qing , Yang Xiao-Mei , Fang Fang , Li Jun , Wang Ya-Hui , Yang Qin , Zhu Lei , Nie Hui-Zhen , Zhang Xue-Li , Feng Ming-Xuan , Jiang Shu-Heng , Tian Guang-Ang , Hu Li-Peng , Lee Ho-Young , Lee Su-Jae , Xia Qiang , Zhang Zhi-Gang
Published: March 2023

Supplementary figures of expression of SPON2, integrin subunit, LATS1 and YAP, effect of SPON2 on M2-like TAM infiltration, co-location of SPON2 and integrin α4/α5, influence of RhoA T19N/Q63L and Rac1 T17N mutants on active RhoA and Rac1, effect of chemokines on primed THP-1 cell migration
Supplementary data list and Figure S1 from HER2/EGFR–AKT Signaling Switches TGFβ from Inhibiting Cell Proliferation to Promoting Cell Migration in Breast Cancer
Authors: Huang Fei , Shi Qiaoni , Li Yuzhen , Xu Linlin , Xu Chi , Chen Fenfang , Wang Hai , Liao Hongwei , Chang Zai , Liu Fang , Zhang Xiang H.-F. , Feng Xin-Hua , Han Jing-Dong J. , Luo Shiwen , Chen Ye-Guang
Published: March 2023

HER2/EGFR signaling alters the responsiveness of breast cancer cells to TGF-ÃŽÂ².
Supplementary Videos from Contact-Dependent Killing by Cytotoxic T Lymphocytes Is Insufficient for EL4 Tumor Regression In Vivo
Authors: Beck Richard J. , Slagter Maarten , Beltman Joost B.
Published: March 2023

Explanation for Supplementary Videos
Supplementary Table S4 from Psychologic Distress Is Associated with Cancer-Specific Mortality among Patients with Cervical Cancer
Authors: Lu Donghao , Andrae Bengt , Valdimarsdóttir Unnur , Sundström Karin , Fall Katja , Sparén Pär , Fang Fang
Published: March 2023

Associations of psychological distress with the risk of cancer-specific mortality, stratified analyses by clinical and demographic characteristics.
Supplementary Figure S1 from Inhibition of Ataxia-Telangiectasia Mutated and RAD3-Related (ATR) Overcomes Oxaliplatin Resistance and Promotes Antitumor Immunity in Colorectal Cancer
Authors: Combès Eve , Andrade Augusto F. , Tosi Diego , Michaud Henri-Alexandre , Coquel Flavie , Garambois Veronique , Desigaud Delphine , Jarlier Marta , Coquelle Arnaud , Pasero Philippe , Bonnefoy Nathalie , Moreaux Jerome , Martineau Pierre , Del Rio Maguy , Beijersbergen Roderick L. , Vezzio-Vie Nadia , Gongora Celine
Published: March 2023

Suppression of ATR expression sensitizes HCT116-R1 cells to oxaliplatin.
Supplementary Figure S4 from Disruption of the Scaffolding Function of mLST8 Selectively Inhibits mTORC2 Assembly and Function and Suppresses mTORC2-Dependent Tumor Growth In Vivo
Authors: Hwang Yoonha , Kim Laura C. , Song Wenqiang , Edwards Deanna N. , Cook Rebecca S. , Chen Jin
Published: March 2023

mLST8-mTOR uncoupling mutations inhibit PTEN-null tumor growth
Supplementary Figure S3 from Disruption of the Scaffolding Function of mLST8 Selectively Inhibits mTORC2 Assembly and Function and Suppresses mTORC2-Dependent Tumor Growth In Vivo
Authors: Hwang Yoonha , Kim Laura C. , Song Wenqiang , Edwards Deanna N. , Cook Rebecca S. , Chen Jin
Published: March 2023

SIN1 NH2-terminal domain is required for mLST8 binding
Supplementary Data from M2 Macrophage-Derived Exosomes Promote Cell Migration and Invasion in Colon Cancer
Authors: Lan Jingqin , Sun Li , Xu Feng , Liu Lu , Hu Fuqing , Song Da , Hou Zhenlin , Wu Wei , Luo Xuelai , Wang Jing , Yuan Xianglin , Hu Junbo , Wang Guihua
Published: March 2023

Supplementary Table 1
Supplementary Figures from Molecular Profiling Establishes Genetic Features Predictive of the Efficacy of the p110β Inhibitor KIN-193
Authors: Sethi Isha , Cai Zhenying , Roberts Thomas M. , Yuan Guo-Cheng
Published: March 2023

Six supplementary figures and legends.
Supplemental Data from Multiregion Sequencing Reveals the Genetic Heterogeneity and Evolutionary History of Osteosarcoma and Matched Pulmonary Metastases
Authors: Wang Di , Niu Xiaohui , Wang Zhijie , Song Cheng-Li , Huang Zhen , Chen Ke-Neng , Duan Jianchun , Bai Hua , Xu Jiachen , Zhao Jun , Wang Yu , Zhuo Minglei , Xie X. Sunney , Kang Xiaozheng , Tian Yanhua , Cai Liangliang , Han Jie-Fei , An Tongtong , Sun Yu , Gao Shugeng , Ying Jianming , Wang Luhua , He Jie , Wang Jie
Published: March 2023

Supplementary Figure S1-S16: Figure S1: landscape of variants in all samples; Figure S2: cancer cell fraction of each mutation; Figure S3: patient screen; Figure S4: high frequency CNV in each sample; Figure S5: SNV disparity between PT and MT; Figure S6: SV features; Figure S7: gene enrichment of each gene category; Figure S8: Jaccard similarity in each patient; Figure S9: clonal status of potential driver genes; Figure S10: mutation signature enrichment in trunk, PTun and MTun; Figure S11: mutation signature enrichment in PT and MT; Figure S12: mutation spectrum in PT and MT; Figure S13: immunohistochemistry of PD-L1 and CD8 in PT and MT; Figure S14: CNV of immune regulatory genes in all samples; Figure S15: response to immune checkpoint inhibitor in patient OS06. Figure S16: The genomic microsatellite stability state in all tumor samples.
Supplementary Table S2 from YES1 Is a Targetable Oncogene in Cancers Harboring YES1 Gene Amplification
Authors: Hamanaka Natsuki , Nakanishi Yoshito , Mizuno Takakazu , Horiguchi-Takei Kana , Akiyama Nukinori , Tanimura Hiromi , Hasegawa Masami , Satoh Yasuko , Tachibana Yukako , Fujii Toshihiko , Sakata Kiyoaki , Ogasawara Kiyomoto , Ebiike Hirosato , Koyano Hiroshi , Sato Haruhiko , Ishii Nobuya , Mio Toshiyuki
Published: March 2023

Kinase selectivity profile of CH6953755. The values of % competition at 0.01 or 0.1 μmol/L CH6953755 in DiscoveRx's KINOMEscan for 456 kinases including mutated kinases.
Figure S3 from T-Type Cav3.1 Channels Mediate Progression and Chemotherapeutic Resistance in Glioblastoma
Authors: Visa Anna , Sallán Marta C. , Maiques Oscar , Alza Lía , Talavera Elisabet , López-Ortega Ricard , Santacana Maria , Herreros Judit , Cantí Carles
Published: March 2023

U87-MG neurospheres (NS) silenced for Cav3.1 expression show increased cell death.
Figure S1 from T-Type Cav3.1 Channels Mediate Progression and Chemotherapeutic Resistance in Glioblastoma
Authors: Visa Anna , Sallán Marta C. , Maiques Oscar , Alza Lía , Talavera Elisabet , López-Ortega Ricard , Santacana Maria , Herreros Judit , Cantí Carles
Published: March 2023

Silencing of Cav3.1 by shRNA, and to a lesser extent silencing of Cav3.2, induces GBM cell death.
Supplementary Data from Radiosensitivity Is an Acquired Vulnerability of PARPi-Resistant BRCA1-Deficient Tumors
Authors: Barazas Marco , Gasparini Alessia , Huang Yike , Küçükosmanoğlu Asli , Annunziato Stefano , Bouwman Peter , Sol Wendy , Kersbergen Ariena , Proost Natalie , de Korte-Grimmerink Renske , van de Ven Marieke , Jonkers Jos , Borst Gerben R. , Rottenberg Sven
Published: March 2023

Supplementary Figure legends
Figure S3 from ERRα Expression in Bone Metastases Leads to an Exacerbated Antitumor Immune Response
Authors: Bouchet Mathilde , Lainé Alexandra , Boyault Cyril , Proponnet-Guerault Mathilde , Meugnier Emmanuelle , Bouazza Lamia , Kan Casina W.S. , Geraci Sandra , El-Moghrabi Soumaya , Hernandez-Vargas Hector , Benetollo Claire , Yoshiko Yuji , Duterque-Coquillaud Martine , Clézardin Philippe , Marie Julien C. , Bonnelye Edith
Published: March 2023

Innate cell homeostasis in the bone colonized by 4T1-ERRα
Supplementary Table S7 from lnCAR: A Comprehensive Resource for lncRNAs from Cancer Arrays
Authors: Zheng Yueyuan , Xu Qingxian , Liu Mengni , Hu Huanjing , Xie Yubin , Zuo Zhixiang , Ren Jian
Published: March 2023

Table S7 Literature validation of Top10 pan-cancer differentially expressed lncRNAs
Supplementary Table S6 from lnCAR: A Comprehensive Resource for lncRNAs from Cancer Arrays
Authors: Zheng Yueyuan , Xu Qingxian , Liu Mengni , Hu Huanjing , Xie Yubin , Zuo Zhixiang , Ren Jian
Published: March 2023

Table S6 Cancer-associated lncRNAs suported by low-throughput experiments
Supplementary Data from An ARC-Regulated IL1β/Cox-2/PGE2/β-Catenin/ARC Circuit Controls Leukemia–Microenvironment Interactions and Confers Drug Resistance in AML
Authors: Carter Bing Z. , Mak Po Yee , Wang Xiangmeng , Tao Wenjing , Ruvolo Vivian , Mak Duncan , Mu Hong , Burks Jared K. , Andreeff Michael
Published: March 2023

Supplemental Table 1. Primers used to construct ARC promoter-GFP reporter lentiviral vectors. Supplemental Table 2. Antibody panel for CyTOF analysis. Supplemental Figure 1. Expression of ARC and b-catenin in bone marrow.
Supplementary Table S5 from lnCAR: A Comprehensive Resource for lncRNAs from Cancer Arrays
Authors: Zheng Yueyuan , Xu Qingxian , Liu Mengni , Hu Huanjing , Xie Yubin , Zuo Zhixiang , Ren Jian
Published: March 2023

Table S5 Sample and clinical information of all the datasets used for survival analysis
Supplementary Table S4 from lnCAR: A Comprehensive Resource for lncRNAs from Cancer Arrays
Authors: Zheng Yueyuan , Xu Qingxian , Liu Mengni , Hu Huanjing , Xie Yubin , Zuo Zhixiang , Ren Jian
Published: March 2023

Table S4 Sample information of all the datasets used for differential expression analysis
Figure S7 from EZH2 Inhibitor GSK126 Suppresses Antitumor Immunity by Driving Production of Myeloid-Derived Suppressor Cells
Authors: Huang Shuo , Wang Zhongyu , Zhou Jie , Huang Jiani , Zhou Li , Luo Jing , Wan Yisong Y. , Long Haixia , Zhu Bo
Published: March 2023

Effect of GSK126 on HPCs
Supplementary figure 2 from RIPK3-Induced Inflammation by I-MDSCs Promotes Intestinal Tumors
Authors: Jayakumar Asha , Bothwell Alfred L.M.
Published: March 2023

Ripk3 inhibition alters intestinal stem cells and T cells in Apc min/+ mice
Supplementary Tables S1-S7 from MDM2 and MDM4 Are Therapeutic Vulnerabilities in Malignant Rhabdoid Tumors
Authors: Howard Thomas P. , Arnoff Taylor E. , Song Melinda R. , Giacomelli Andrew O. , Wang Xiaofeng , Hong Andrew L. , Dharia Neekesh V. , Wang Su , Vazquez Francisca , Pham Minh-Tam , Morgan Ann M. , Wachter Franziska , Bird Gregory H. , Kugener Guillaume , Oberlick Elaine M. , Rees Matthew G. , Tiv Hong L. , Hwang Justin H. , Walsh Katherine H. , Cook April , Krill-Burger John M. , Tsherniak Aviad , Gokhale Prafulla C. , Park Peter J. , Stegmaier Kimberly , Walensky Loren D. , Hahn William C. , Roberts Charles W.M.
Published: March 2023

S1: Sources, media, and other information on all cell lines. S2: p53 status annotations for all cell lines. S3: sgRNA sequences for TP53 inactivation. S4: Primers for TP53 allele screening and RT-qPCR. S5: Sources, catalog numbers, and dilutions of all antibodies. S6: RNA-seq data for p53 target genes. S7: GSEA from RNA-seq data.
Video from ACE: A Workbench Using Evolutionary Genetic Algorithms for Analyzing Association in TCGA
Authors: Gilmore Alan R. , Alderdice Matthew , Savage Kienan I. , O'Reilly Paul G. , Roddy Aideen C. , Dunne Philip D. , Lawler Mark , McDade Simon S. , Waugh David J. , McArt Darragh G.
Published: March 2023

ACE Video demonstration
Supplementary Figure 2 from Biophysicochemical Motifs in T-cell Receptor Sequences Distinguish Repertoires from Tumor-Infiltrating Lymphocyte and Adjacent Healthy Tissue
Authors: Ostmeyer Jared , Christley Scott , Toby Inimary T. , Cowell Lindsay G.
Published: March 2023

model weights for colorectal cancer model
Supplementary File from ACE: A Workbench Using Evolutionary Genetic Algorithms for Analyzing Association in TCGA
Authors: Gilmore Alan R. , Alderdice Matthew , Savage Kienan I. , O'Reilly Paul G. , Roddy Aideen C. , Dunne Philip D. , Lawler Mark , McDade Simon S. , Waugh David J. , McArt Darragh G.
Published: March 2023

ACE white paper
Supplementary Data from A Functional Landscape of Resistance to MEK1/2 and CDK4/6 Inhibition in NRAS-Mutant Melanoma
Authors: Hayes Tikvah K. , Luo Flora , Cohen Ofir , Goodale Amy B. , Lee Yenarae , Pantel Sasha , Bagul Mukta , Piccioni Federica , Root David E. , Garraway Levi A. , Meyerson Matthew , Johannessen Cory M.
Published: March 2023

SF1: NRAS mutant melanoma sensitivity to trametinib and palbociclib treatment; SF2: MELJUSO ORF Screen Optimization and Validation; SF3: MELJUSO CRISPR Screen Optimization and Validation; SF4: EGFR-PI3K-AKT signaling modulates resistance to trametinib/palbociclib treatment in NRAS mutant melanoma cell lines; SF5: RAS signaling modulates resistance to trametinib/palbociclib treatment in NRAS mutant melanoma cell lines; SF6: EGFR-PI3K-AKT signaling cascade differentially replaces loss of genetic NRAS in NRAS mutant melanoma cell lines; SF7: Active KRAS can replace loss of genetic NRAS
Supplementary Data from Autocrine IL6-Mediated Activation of the STAT3–DNMT Axis Silences the TNFα–RIP1 Necroptosis Pathway to Sustain Survival and Accumulation of Myeloid-Derived Suppressor Cells
Authors: Smith Alyssa D. , Lu Chunwan , Payne Daniela , Paschall Amy V. , Klement John D. , Redd Priscilla S. , Ibrahim Mohammed L. , Yang Dafeng , Han Qimei , Liu Zhuoqi , Shi Huidong , Hartney Thomas J. , Nayak-Kapoor Asha , Liu Kebin
Published: March 2023

Supplemental Figures 1-7. Figure S1. IRF8 expression profiles in subsets of immune cells in spleens of tumor-bearing mice. Figure S2. IRF8 expression profiles in subsets of immune cells in peripheral blood of tumor-bearing mice. Figure S3. DNA methylation and MDSC accumulation in tumor-bearing mice. Figure S4. Inhibition of DNA methylation activates antigen-specific CTLs in tumor-bearing mice. Figure S5. Neutralization of TNFα increases tumor growth and MDSC accumulation. Figure S6. RIP1 and RIP3 are expressed in MDSCs. Figure S7. IL6 expression level in human colon carcinoma and melanoma. Table S1. Colorectal cancer patient data. Table S2. Colon cancer patient data.
Table S5 from Topological Tumor Graphs: A Graph-Based Spatial Model to Infer Stromal Recruitment for Immunosuppression in Melanoma Histology
Authors: Failmezger Henrik , Muralidhar Sathya , Rullan Antonio , de Andrea Carlos E. , Sahai Erik , Yuan Yinyin
Published: March 2023

Pathways enriched for genes downregulated in tumours with high stromal clustering
Table S2 from Topological Tumor Graphs: A Graph-Based Spatial Model to Infer Stromal Recruitment for Immunosuppression in Melanoma Histology
Authors: Failmezger Henrik , Muralidhar Sathya , Rullan Antonio , de Andrea Carlos E. , Sahai Erik , Yuan Yinyin
Published: March 2023

Genes identified by CNx to underpin stromal barrier
Supplementary Fig S4 from Topological Tumor Graphs: A Graph-Based Spatial Model to Infer Stromal Recruitment for Immunosuppression in Melanoma Histology
Authors: Failmezger Henrik , Muralidhar Sathya , Rullan Antonio , de Andrea Carlos E. , Sahai Erik , Yuan Yinyin
Published: March 2023

Figure S4
Supplementary Data from Topological Tumor Graphs: A Graph-Based Spatial Model to Infer Stromal Recruitment for Immunosuppression in Melanoma Histology
Authors: Failmezger Henrik , Muralidhar Sathya , Rullan Antonio , de Andrea Carlos E. , Sahai Erik , Yuan Yinyin
Published: March 2023

Additional supplementary material
Supplementary Data Fig. S3 from Lymphoma Angiogenesis Is Orchestrated by Noncanonical Signaling Pathways
Authors: Gloger Marleen , Menzel Lutz , Grau Michael , Vion Anne-Clemence , Anagnostopoulos Ioannis , Zapukhlyak Myroslav , Gerlach Kerstin , Kammertöns Thomas , Hehlgans Thomas , Zschummel Maria , Lenz Georg , Gerhardt Holger , Höpken Uta E. , Rehm Armin
Published: March 2023

Proliferation induction
Supplementary Data Fig. S1 from Lymphoma Angiogenesis Is Orchestrated by Noncanonical Signaling Pathways
Authors: Gloger Marleen , Menzel Lutz , Grau Michael , Vion Anne-Clemence , Anagnostopoulos Ioannis , Zapukhlyak Myroslav , Gerlach Kerstin , Kammertöns Thomas , Hehlgans Thomas , Zschummel Maria , Lenz Georg , Gerhardt Holger , Höpken Uta E. , Rehm Armin
Published: March 2023

PNAd detection on DLBCL
Supplemental figures from A Sox2:miR-486-5p Axis Regulates Survival of GBM Cells by Inhibiting Tumor Suppressor Networks
Authors: Lopez-Bertoni Hernando , Kotchetkov Ivan S. , Mihelson Nicole , Lal Bachchu , Rui Yuan , Ames Heather , Lugo-Fagundo Maria , Guerrero-Cazares Hugo , Quiñones-Hinojosa Alfredo , Green Jordan J. , Laterra John
Published: March 2023

File contains Figures S1-S7 showing additional molecular and biochemical endpoints, TCGA data analysis, and histology.
Supplementary Movie 2 from Twist1-Induced Epithelial Dissemination Requires Prkd1 Signaling
Authors: Georgess Dan , Padmanaban Veena , Sirka Orit Katarina , Coutinho Kester , Choi Alex , Frid Gabriela , Neumann Neil M. , Inoue Takanari , Ewald Andrew J.
Published: March 2023

Late inhibition of Prkd1 after onset of dissemination prevents disseminated cell migration and prevents de novo dissemination.
Single file with supplemental methods, figures, tables, legends. from Twist1-Induced Epithelial Dissemination Requires Prkd1 Signaling
Authors: Georgess Dan , Padmanaban Veena , Sirka Orit Katarina , Coutinho Kester , Choi Alex , Frid Gabriela , Neumann Neil M. , Inoue Takanari , Ewald Andrew J.
Published: March 2023

SF1: TGF-β1 promotes Twist1-induced epithelial dissemination without loss of adherens junction protein expression; SF2: Prkd1 inhibitors kb-NB142-70 and Gö-6976 block Twist1- induced dissemination dose-dependently; SF3: Dissemination defects in Twist1-On organoids resulting from Prkd1 inactivation; SF4: Twist1-induced epithelial cells express Prkd1 and maintain β-catenin expression; SF5: Limited toxicity observed in response to drug treatment of Twist1-induced organoids; SF6: Supporting data for Figure 6: SF7: Molecular model for Twist1-induced epithelial dissemination; ST1: List of inhibitors tested in Figure 1; ST2: List of antibodies used in the study; ST3: Phosphoantibody microarray data. Supplementary movie legends.
Supplementary Tables from Downregulation of miR-223 Expression Is an Early Event during Mammary Transformation and Confers Resistance to CDK4/6 Inhibitors in Luminal Breast Cancer
Authors: Citron Francesca , Segatto Ilenia , Vinciguerra Gian Luca Rampioni , Musco Lorena , Russo Francesca , Mungo Giorgia , D'Andrea Sara , Mattevi Maria Chiara , Perin Tiziana , Schiappacassi Monica , Massarut Samuele , Marchini Cristina , Amici Augusto , Vecchione Andrea , Baldassarre Gustavo , Belletti Barbara
Published: March 2023

Table S1: Clinical Data of BC samples collected at Centro di Riferimento Oncologico di Aviano (CRO), IRCCS, National Cancer Institute, Aviano, Italy. Table S2: Clinical Data of BC samples collected in University "Sapienza" of Rome, Santo Andrea Hospital, Rome, Italy
Supplementary Data from De Novo Lipogenesis Alters the Phospholipidome of Esophageal Adenocarcinoma
Authors: Abbassi-Ghadi Nima , Antonowicz Stefan S. , McKenzie James S. , Kumar Sacheen , Huang Juzheng , Jones Emrys A. , Strittmatter Nicole , Petts Gemma , Kudo Hiromi , Court Stephen , Hoare Jonathan M. , Veselkov Kirill , Goldin Robert , Takáts Zoltán , Hanna George B.
Published: March 2023

The Supplementary information file contains: (i) Supplementary Methods, concerning PCR primers, antibodies and explanation of the chemometric approach. (ii) Supplementary Figures 1-4, which provide extended data for the multivariable models of Figure 2 and 3, MS/MS analyses, and further gene expression data supporting Figure 5. (iii) Supplementary Tables 1-4, which provide demographics of the cohorts and univariate lipid analyses from Cohort 1 and 2.
Supplementary Data from Subcellular Distribution of p53 by the p53-Responsive lncRNA NBAT1 Determines Chemotherapeutic Response in Neuroblastoma
Authors: Mitra Sanhita , Muralidharan Somsundar Veppil , Di Marco Mirco , Juvvuna Prasanna Kumar , Kosalai Subazini Thankaswamy , Reischl Silke , Jachimowicz Daniel , Subhash Santhilal , Raimondi Ivan , Kurian Leo , Huarte Maite , Kogner Per , Fischer Matthias , Johnsen John Inge , Mondal Tanmoy , Kanduri Chandrasekhar
Published: March 2023

Supplementary Figures S1-S6
Supplemental Movie 8 from YAP Enhances Tumor Cell Dissemination by Promoting Intravascular Motility and Reentry into Systemic Circulation
Authors: Benjamin David C. , Kang Joon Ho , Hamza Bashar , King Emily M. , Lamar John M. , Manalis Scott R. , Hynes Richard O.
Published: March 2023

Movie of A375 EV control cells in the inter-segmental vessels (ISVs) over the course of ~3 hours.
Supplemental Movie 7 from YAP Enhances Tumor Cell Dissemination by Promoting Intravascular Motility and Reentry into Systemic Circulation
Authors: Benjamin David C. , Kang Joon Ho , Hamza Bashar , King Emily M. , Lamar John M. , Manalis Scott R. , Hynes Richard O.
Published: March 2023

Movie of A375 cells over-expressing YAP-AA in the tail over the course of 12 hours following injection.
Supplemental Movie 3 from YAP Enhances Tumor Cell Dissemination by Promoting Intravascular Motility and Reentry into Systemic Circulation
Authors: Benjamin David C. , Kang Joon Ho , Hamza Bashar , King Emily M. , Lamar John M. , Manalis Scott R. , Hynes Richard O.
Published: March 2023

Movie over 12 hours of the head of a zebrafish embryo injected with YAP-AA-over-expressing A375 cells.
Supplemental Figure Legends from YAP Enhances Tumor Cell Dissemination by Promoting Intravascular Motility and Reentry into Systemic Circulation
Authors: Benjamin David C. , Kang Joon Ho , Hamza Bashar , King Emily M. , Lamar John M. , Manalis Scott R. , Hynes Richard O.
Published: March 2023

Legends for the supplemental figures and videos.
Figure S4 from YAP Enhances Tumor Cell Dissemination by Promoting Intravascular Motility and Reentry into Systemic Circulation
Authors: Benjamin David C. , Kang Joon Ho , Hamza Bashar , King Emily M. , Lamar John M. , Manalis Scott R. , Hynes Richard O.
Published: March 2023

YAP-AA does not enhance arrest, extravasation, or survival in circulation.
Figure S1 from YAP and AP-1 Cooperate to Initiate Pancreatic Cancer Development from Ductal Cells in Mice
Authors: Park Jaeoh , Eisenbarth David , Choi Wonyoung , Kim Hail , Choi Chan , Lee Dahye , Lim Dae-Sik
Published: March 2023

Supplementary Figure S1
Titles for supplementary tables from BRG1 Loss Predisposes Lung Cancers to Replicative Stress and ATR Dependency
Authors: Gupta Manav , Concepcion Carla P. , Fahey Caroline G. , Keshishian Hasmik , Bhutkar Arjun , Brainson Christine F. , Sanchez-Rivera Francisco J. , Pessina Patrizia , Kim Jonathan Y. , Simoneau Antoine , Paschini Margherita , Beytagh Mary C. , Stanclift Caroline R. , Schenone Monica , Mani D.R. , Li Chendi , Oh Audris , Li Fei , Hu Hai , Karatza Angeliki , Bronson Roderick T. , Shaw Alice T. , Hata Aaron N. , Wong Kwok-Kin , Zou Lee , Carr Steven A. , Jacks Tyler , Kim Carla F.
Published: March 2023

All titles for supplementary tables included here.
Figure S5 from Oncogenic BRAFV600E Governs Regulatory T-cell Recruitment during Melanoma Tumorigenesis
Authors: Shabaneh Tamer B. , Molodtsov Aleksey K. , Steinberg Shannon M. , Zhang Peisheng , Torres Gretel M. , Mohamed Gadisti A. , Boni Andrea , Curiel Tyler J. , Angeles Christina V. , Turk Mary Jo
Published: March 2023

Chemokine protein levels and effects of neutralization
Dataset S2 from Inhibition of Histone H3K27 Demethylases Inactivates Brachyury (TBXT) and Promotes Chordoma Cell Death
Authors: Cottone Lucia , Cribbs Adam P. , Khandelwal Garima , Wells Graham , Ligammari Lorena , Philpott Martin , Tumber Anthony , Lombard Patrick , Hookway Edward S. , Szommer Tamas , Johansson Catrine , Brennan Paul E. , Pillay Nischalan , Jenner Richard G. , Oppermann Udo , Flanagan Adrienne M.
Published: March 2023

Chordoma RNAseq_all cell lines_gene lists
Supplementary Figure 2 from Loss of ARID1A Promotes Epithelial–Mesenchymal Transition and Sensitizes Pancreatic Tumors to Proteotoxic Stress
Authors: Tomihara Hideo , Carbone Federica , Perelli Luigi , Huang Justin K. , Soeung Melinda , Rose Johnathon L. , Robinson Frederick S. , Lissanu Deribe Yonathan , Feng Ningping , Takeda Mitsunobu , Inoue Akira , Poggetto Edoardo Del , Deem Angela K. , Maitra Anirban , Msaouel Pavlos , Tannir Nizar M. , Draetta Giulio F. , Viale Andrea , Heffernan Timothy P. , Bristow Christopher A. , Carugo Alessandro , Genovese Giannicola
Published: March 2023

Supplementary Figure 2. Knocking out ARID1A does not impair viability in PDAC cell lines.
Supplementary Info from STAT3-Mediated Astrocyte Reactivity Associated with Brain Metastasis Contributes to Neurovascular Dysfunction
Authors: Sarmiento Soto Manuel , Larkin James R. , Martin Chris , Khrapitchev Alexandre A. , Maczka Melissa , Economopoulos Vasiliki , Scott Helen , Escartin Carole , Bonvento Gilles , Serres Sébastien , Sibson Nicola R.
Published: March 2023

Supplementary Methods, Figure Legends and Tables
Figure S5 from STAT3-Mediated Astrocyte Reactivity Associated with Brain Metastasis Contributes to Neurovascular Dysfunction
Authors: Sarmiento Soto Manuel , Larkin James R. , Martin Chris , Khrapitchev Alexandre A. , Maczka Melissa , Economopoulos Vasiliki , Scott Helen , Escartin Carole , Bonvento Gilles , Serres Sébastien , Sibson Nicola R.
Published: March 2023

Additional info regarding COX-1 and iNOS
Supplementary Data from ENO1 Promotes Lung Cancer Metastasis via HGFR and WNT Signaling–Driven Epithelial-to-Mesenchymal Transition
Authors: Li Hsin-Jung , Ke Feng-Yi , Lin Chia-Ching , Lu Mei-Yi , Kuo Yi-Huei , Wang Yi-Ping , Liang Kang-Hao , Lin Shin-Chang , Chang Ya-Hsuan , Chen Hsuan-Yu , Yang Pan-Chyr , Wu Han-Chung
Published: March 2023

Supplementary Data, including figures 1-12.