bluuebunny/crossref_metadata_2025 huggingface dataset:
Characterizing the Complexity of Subduction Zone Flow With an Ensemble of Multiscale Global Convection Models
Authors: Goldberg Samuel L. , Holt Adam F.
Published: February 2024

Subduction zones are fundamental features of Earth's mantle convection and plate tectonics, but mantle flow and pressure around slabs are poorly understood because of the lack of direct observational constraints on subsurface flow. To characterize the linkages between slabs and mantle flow, we integrate high‐resolution representations of Earth's lithosphere and slabs into a suite of global mantle convection models to produce physically plausible present‐day flow fields for Earth's mantle. We find that subduction zones containing wide, thick, and long slabs dominate regional mantle flow in the neighboring regions and this flow conforms to patterns predicted by simpler regional subduction models. These subduction zones, such as Kuril‐Japan‐Izu‐Bonin‐Mariana, feature prismatic poloidal flow coupled to the downgoing slab that rotates toward toroidal slab‐parallel flow near the slab edge. However, other subduction zones, such as Sumatra, deviate from this pattern because of the competing influence of other slabs or longer‐wavelength mantle flow, showing that upper mantle flow can link separate subduction zones and how flow at subduction zones is influenced by broader scale mantle flow. We find that the non‐linear dislocation creep reduces the coupling between slab motion and asthenospheric flow and increases the occurrence of non‐ideal flow, in line with inferences derived from seismological constraints on mantle anisotropy.
Identifying Distinct Pre‐Eruptive Composition‐H2O‐Time Trends Using Plagioclase
Authors: Higgins Oliver , Sheldrake Tom
Published: February 2024

Macrocrysts (large crystals) in magmas offer a premier record of pre‐eruptive magma storage conditions encoded in their chemistry and texture. Careful study of macrocryst zoning can deconvolve the conditions of crystal growth and the relative time a magma spends in a given physical‐chemical state prior to eruption. Importantly, identifying discrete macrocryst zones requires consideration of both chemistry and texture simultaneously. Here, we employ a novel image segmentation approach to characterize zoning from 2D chemical maps of plagioclase macrocrysts. We apply the method to 15 volcanic eruptions, across three stratigraphic sections, to track statistical differences in crystal zoning through relative time at an arc volcano (Mount Liamuiga, Saint Kitts). Plagioclase from the 15 eruptions are described by 7 unique textural‐chemical zoning populations, which we term “zoning groups,” each of which has a unique An# fingerprint. Two of the studied stratigraphic sections overwhelmingly record low‐An# zoning groups (ZGs), whereas the other section records mostly high‐An# ZGs, suggestive of two distinct storage conditions. Using observations from equilibrium experiments relevant to Saint Kitts bulk magma compositions, we show that differences in melt H2O are the primary drivers of the An# variability. Negative whole rock K2O versus predicted H2O trends are suggestive of ubiquitous H2O‐saturated conditions throughout the middle and upper crust, with a correlation between H2O‐saturated storage pressure (Psat) and eruptive dynamics; magmas stored in the upper‐crust (0.48 ± 0.28–1.08 ± 0.45 kbar) produce larger‐volume, pumice‐rich eruptions compared to magmas stored in the middle crust (3.29 ± 0.87–3.88 ± 1.05 kbar) which generally produce smaller‐volume, centimeter to decimeter‐thick fall deposits.
Archimedean Spiral Distribution of Energetic Particles in Earth's Inner Radiation Belt
Authors: Sun Weiqin , Yang Jian , Wang Wenrui , Cui Jun , Toffoletto Frank , Yue Chao , Gkioulidou Matina , Andrew Gerrard J.
Published: February 2024

Archimedean spirals are common in various fields such as biology, engineering, astronomy, and space physics. Here we report the discovery of patterns resembling the general Archimedean spirals in particle distributions in the Earth radiation belt. Our analytic theory and numerical simulations demonstrate that electrons with initially asymmetric spatial distributions form such spirals in the inner magnetosphere, where particles at smaller radial distances move more slowly in angular velocity. These spirals result in time‐varying peaks and valleys in particle fluxes, referred to as “zebra stripes,” which are well consistent with Van Allen Probes measurements. Although the initial asymmetric distribution may be seeded by the electric field in the magnetosphere, the spiral formation does not require them. Furthermore, we show that, due to the same fundamental motion of charged particles in regions dominated by dipole fields, this spiral phenomenon may also appear in the proton distributions, as well as in planetary magnetospheres.
Non‐Linear Seismic Velocity Variations Observed During a Seismic Swarm in the Alto Tiberina Low Angle Normal Fault From Ambient Noise Correlation Measurements
Authors: Mikhael Nour , Poli Piero , Garambois Stéphane
Published: February 2024

From seismic interferometry, we investigate the strain sensitivity to seismic velocity variations related to a seismic swarm activity that occurred in 2013 along the Alto Tiberina low angle normal fault. We compute daily auto‐correlation functions of ambient noise recorded at seismic stations located in the vicinity of the fault over the course of 10 years. Using the stretching technique, we compute daily velocity variations smoothed over a period of 100 days with a time lapse approach. Through the application of an optimization procedure based on synthetic modeling, we separate the non‐tectonic, thermoelastic and rain induced velocity variations, from the tectonic components. Consequently, we unravel a significant velocity drop of 0.033% coinciding with the swarm occurring at seismogenic depth (3–5 km). Additionally, the time evolution of the velocity changes shows a direct relationship with the strain rate rather than the strain indicating a non‐linear behavior of the crust induced by aseismic slip. The deduced strain sensitivity, exhibiting an order of magnitude comparable to that observed within volcanic settings, confirms this non‐linear behavior and suggests the presence of pressurized fluids at depth.
Protein phosphatase 1 regulatory subunit 15 A promotes translation initiation and induces G2M phase arrest during cuproptosis in cancers
Authors: Liu Chunyu , Chen Liang , Cong Yukun , Cheng Lulin , Shuai Yujun , Lv Fang , Chen Kang , Song Yarong , Xing Yifei
Published: February 2024

Copper ions play a crucial role as cofactors for essential enzymes in cellular processes. However, when the intracellular concentration of copper ions exceeds the homeostatic threshold, they become toxic to cells. In our study, we demonstrated that elesclomol, as a carrier of copper ions, caused an upregulation of protein phosphatase 1 regulatory subunit 15 A (PPP1R15A), which plays a role in regulating substrate selectivity of protein phosphatase 1 during cuproptosis. Mechanistically, we investigated that PPP1R15A activated translation initiation by dephosphorylating eukaryotic translation initiation factor 2 subunit alpha at the S51 residue through protein phosphatase 1 and phosphorylating eukaryotic translation initiation factor 4E binding protein 1 at the T70 residue. In addition, PPP1R15A reduced H3K4 methylation by altering the phosphorylation of histone methyltransferases, which led to the silencing of MYC and G2M phase arrest.
Difficulty in chirality recognition for Transformer architectures learning chemical structures from string representations
Authors: Yoshikai Yasuhiro , Mizuno Tadahaya , Nemoto Shumpei , Kusuhara Hiroyuki
Published: February 2024

Recent years have seen rapid development of descriptor generation based on representation learning of extremely diverse molecules, especially those that apply natural language processing (NLP) models to SMILES, a literal representation of molecular structure. However, little research has been done on how these models understand chemical structure. To address this black box, we investigated the relationship between the learning progress of SMILES and chemical structure using a representative NLP model, the Transformer. We show that while the Transformer learns partial structures of molecules quickly, it requires extended training to understand overall structures. Consistently, the accuracy of molecular property predictions using descriptors generated from models at different learning steps was similar from the beginning to the end of training. Furthermore, we found that the Transformer requires particularly long training to learn chirality and sometimes stagnates with low performance due to misunderstanding of enantiomers. These findings are expected to deepen the understanding of NLP models in chemistry.
Chiral active particles are sensitive reporters to environmental geometry
Authors: Chan Chung Wing , Wu Daihui , Qiao Kaiyao , Fong Kin Long , Yang Zhiyu , Han Yilong , Zhang Rui
Published: February 2024

Chiral active particles (CAPs) are self-propelling particles that break time-reversal symmetry by orbiting or spinning, leading to intriguing behaviors. Here, we examined the dynamics of CAPs moving in 2D lattices of disk obstacles through active Brownian dynamics simulations and granular experiments with grass seeds. We find that the effective diffusivity of the CAPs is sensitive to the structure of the obstacle lattice, a feature absent in achiral active particles. We further studied the transport of CAPs in obstacle arrays under an external field and found a reentrant directional locking effect, which can be used to sort CAPs with different activities. Finally, we demonstrated that parallelogram lattices of obstacles without mirror symmetry can separate clockwise and counter-clockwise CAPs. The mechanisms of the above three novel phenomena are qualitatively explained. As such, our work provides a basis for designing chirality-based tools for single-cell diagnosis and separation, and active particle-based environmental sensors.
Mosquito midgut stem cell cellular defense response limits Plasmodium parasite infection
Authors: Barletta Ana-Beatriz F. , Smith Jamie C. , Burkart Emily , Bondarenko Simon , Sharakhov Igor V. , Criscione Frank , O’Brochta David , Barillas-Mury Carolina
Published: February 2024

A novel cellular response of midgut progenitors (stem cells and enteroblasts) to Plasmodium berghei infection was investigated in Anopheles stephensi. The presence of developing oocysts triggers proliferation of midgut progenitors that is modulated by the Jak/STAT pathway and is proportional to the number of oocysts on individual midguts. The percentage of parasites in direct contact with enteroblasts increases over time, as progenitors proliferate. Silencing components of key signaling pathways through RNA interference (RNAi) that enhance proliferation of progenitor cells significantly decreased oocyst numbers, while limiting proliferation of progenitors increased oocyst survival. Live imaging revealed that enteroblasts interact directly with oocysts and eliminate them. Midgut progenitors sense the presence of Plasmodium oocysts and mount a cellular defense response that involves extensive proliferation and tissue remodeling, followed by oocysts lysis and phagocytosis of parasite remnants by enteroblasts.
Duplicated antibiotic resistance genes reveal ongoing selection and horizontal gene transfer in bacteria
Authors: Maddamsetti Rohan , Yao Yi , Wang Teng , Gao Junheng , Huang Vincent T. , Hamrick Grayson S. , Son Hye-In , You Lingchong
Published: February 2024

Horizontal gene transfer (HGT) and gene duplication are often considered as separate mechanisms driving the evolution of new functions. However, the mobile genetic elements (MGEs) implicated in HGT can copy themselves, so positive selection on MGEs could drive gene duplications. Here, we use a combination of modeling and experimental evolution to examine this hypothesis and use long-read genome sequences of tens of thousands of bacterial isolates to examine its generality in nature. Modeling and experiments show that antibiotic selection can drive the evolution of duplicated antibiotic resistance genes (ARGs) through MGE transposition. A key implication is that duplicated ARGs should be enriched in environments associated with antibiotic use. To test this, we examined the distribution of duplicated ARGs in 18,938 complete bacterial genomes with ecological metadata. Duplicated ARGs are highly enriched in bacteria isolated from humans and livestock. Duplicated ARGs are further enriched in an independent set of 321 antibiotic-resistant clinical isolates. Our findings indicate that duplicated genes often encode functions undergoing positive selection and horizontal gene transfer in microbial communities.
Facilitating alkaline hydrogen evolution reaction on the hetero-interfaced Ru/RuO2 through Pt single atoms doping
Authors: Zhu Yiming , Klingenhof Malte , Gao Chenlong , Koketsu Toshinari , Weiser Gregor , Pi Yecan , Liu Shangheng , Sui Lijun , Hou Jingrong , Li Jiayi , Jiang Haomin , Xu Limin , Huang Wei-Hsiang , Pao Chih-Wen , Yang Menghao , Hu Zhiwei , Strasser Peter , Ma Jiwei
Published: February 2024

Exploring an active and cost-effective electrocatalyst alternative to carbon-supported platinum nanoparticles for alkaline hydrogen evolution reaction (HER) have remained elusive to date. Here, we report a catalyst based on platinum single atoms (SAs) doped into the hetero-interfaced Ru/RuO2 support (referred to as Pt-Ru/RuO2), which features a low HER overpotential, an excellent stability and a distinctly enhanced cost-based activity compared to commercial Pt/C and Ru/C in 1 M KOH. Advanced physico-chemical characterizations disclose that the sluggish water dissociation is accelerated by RuO2 while Pt SAs and the metallic Ru facilitate the subsequent H* combination. Theoretical calculations correlate with the experimental findings. Furthermore, Pt-Ru/RuO2 only requires 1.90 V to reach 1 A cm−2 and delivers a high price activity in the anion exchange membrane water electrolyzer, outperforming the benchmark Pt/C. This research offers a feasible guidance for developing the noble metal-based catalysts with high performance and low cost toward practical H2 production.
Accessing ladder-shape azetidine-fused indoline pentacycles through intermolecular regiodivergent aza-Paternò–Büchi reactions
Authors: Huang Jianjian , Zhou Tai-Ping , Sun Ningning , Yu Huaibin , Yu Xixiang , Liao Rong-Zhen , Yao Weijun , Dai Zhifeng , Wu Guojiao , Zhong Fangrui
Published: February 2024

Small molecules with conformationally rigid, three-dimensional geometry are highly desirable in drug development, toward which a direct, simple-to-complexity synthetic logic is still of considerable challenges. Here, we report intermolecular aza-[2 + 2] photocycloaddition (the aza-Paternò–Büchi reaction) of indole that facilely assembles planar building blocks into ladder-shape azetidine-fused indoline pentacycles with contiguous quaternary carbons, divergent head-to-head/head-to-tail regioselectivity, and absolute exo stereoselectivity. These products exhibit marked three-dimensionality, many of which possess 3D score values distributed in the highest 0.5% region with reference to structures from DrugBank database. Mechanistic studies elucidated the origin of the observed regio- and stereoselectivities, which arise from distortion-controlled C-N coupling scenarios. This study expands the synthetic repertoire of energy transfer catalysis for accessing structurally intriguing architectures with high molecular complexity and underexplored topological chemical space.
A microfluidic platform integrating functional vascularized organoids-on-chip
Authors: Quintard Clément , Tubbs Emily , Jonsson Gustav , Jiao Jie , Wang Jun , Werschler Nicolas , Laporte Camille , Pitaval Amandine , Bah Thierno-Sidy , Pomeranz Gideon , Bissardon Caroline , Kaal Joris , Leopoldi Alexandra , Long David A. , Blandin Pierre , Achard Jean-Luc , Battail Christophe , Hagelkruys Astrid , Navarro Fabrice , Fouillet Yves , Penninger Josef M. , Gidrol Xavier
Published: February 2024

The development of vascular networks in microfluidic chips is crucial for the long-term culture of three-dimensional cell aggregates such as spheroids, organoids, tumoroids, or tissue explants. Despite rapid advancement in microvascular network systems and organoid technologies, vascularizing organoids-on-chips remains a challenge in tissue engineering. Most existing microfluidic devices poorly reflect the complexity of in vivo flows and require complex technical set-ups. Considering these constraints, we develop a platform to establish and monitor the formation of endothelial networks around mesenchymal and pancreatic islet spheroids, as well as blood vessel organoids generated from pluripotent stem cells, cultured for up to 30 days on-chip. We show that these networks establish functional connections with the endothelium-rich spheroids and vascular organoids, as they successfully provide intravascular perfusion to these structures. We find that organoid growth, maturation, and function are enhanced when cultured on-chip using our vascularization method. This microphysiological system represents a viable organ-on-chip model to vascularize diverse biological 3D tissues and sets the stage to establish organoid perfusions using advanced microfluidics.
Cellular hierarchy insights reveal leukemic stem-like cells and early death risk in acute promyelocytic leukemia
Authors: Jin Wen , Dai Yuting , Chen Li , Zhu Honghu , Dong Fangyi , Zhu Hongming , Meng Guoyu , Li Junmin , Chen Saijuan , Chen Zhu , Fang Hai , Wang Kankan
Published: February 2024

Acute promyelocytic leukemia (APL) represents a paradigm for targeted differentiation therapy, with a minority of patients experiencing treatment failure and even early death. We here report a comprehensive single-cell analysis of 16 APL patients, uncovering cellular compositions and their impact on all-trans retinoic acid (ATRA) response in vivo and early death. We unveil a cellular differentiation hierarchy within APL blasts, rooted in leukemic stem-like cells. The oncogenic PML/RARα fusion protein exerts branch-specific regulation in the APL trajectory, including stem-like cells. APL cohort analysis establishes an association of leukemic stemness with elevated white blood cell counts and FLT3-ITD mutations. Furthermore, we construct an APL-specific stemness score, which proves effective in assessing early death risk. Finally, we show that ATRA induces differentiation of primitive blasts and patients with early death exhibit distinct stemness-associated transcriptional programs. Our work provides a thorough survey of APL cellular hierarchies, offering insights into cellular dynamics during targeted therapy.
Vascular network-inspired fluidic system (VasFluidics) with spatially functionalizable membranous walls
Authors: Yu Yafeng , Pan Yi , Shen Yanting , Tian Jingxuan , Zhang Ruotong , Guo Wei , Li Chang , Shum Ho Cheung
Published: February 2024

In vascular networks, the transport across different vessel walls regulates chemical compositions in blood over space and time. Replicating such trans-wall transport with spatial heterogeneity can empower synthetic fluidic systems to program fluid compositions spatiotemporally. However, it remains challenging as existing synthetic channel walls are typically impermeable or composed of homogeneous materials without functional heterogeneity. This work presents a vascular network-inspired fluidic system (VasFluidics), which is functionalizable for spatially different trans-wall transport. Facilitated by embedded three-dimensional (3D) printing, elastic, ultrathin, and semipermeable walls self-assemble electrostatically. Physicochemical reactions between fluids and walls are localized to vary the trans-wall molecules among separate regions, for instance, by confining solutions or locally immobilizing enzymes on the outside of channels. Therefore, fluid compositions can be regulated spatiotemporally, for example, to mimic blood changes during glucose absorption and metabolism. Our VasFluidics expands opportunities to replicate biofluid processing in nature, providing an alternative to traditional fluidics.
Integrating hydrogen utilization in CO2 electrolysis with reduced energy loss
Authors: Jiang Xiaoyi , Ke Le , Zhao Kai , Yan Xiaoyu , Wang Hongbo , Cao Xiaojuan , Liu Yuchen , Li Lingjiao , Sun Yifei , Wang Zhiping , Dang Dai , Yan Ning
Published: February 2024

Electrochemical carbon dioxide reduction reaction using sustainable energy is a promising approach of synthesizing chemicals and fuels, yet is highly energy intensive. The oxygen evolution reaction is particularly problematic, which is kinetically sluggish and causes anodic carbon loss. In this context, we couple CO2 electrolysis with hydrogen oxidation reaction in a single electrochemical cell. A Ni(OH)2/NiOOH mediator is used to fully suppress the anodic carbon loss and hydrogen oxidation catalyst poisoning by migrated reaction products. This cell is highly flexible in producing either gaseous (CO) or soluble (formate) products with high selectivity (up to 95.3%) and stability (>100 h) at voltages below 0.9 V (50 mA cm−2). Importantly, thanks to the “transferred” oxygen evolution reaction to a water electrolyzer with thermodynamically and kinetically favored reaction conditions, the total polarization loss and energy consumption of our H2-integrated CO2 reduction reaction, including those for hydrogen generation, are reduced up to 22% and 42%, respectively. This work demonstrates the opportunity of combining CO2 electrolysis with the hydrogen economy, paving the way to the possible integration of various emerging energy conversion and storage approaches for improved energy/cost effectiveness.
A system for inducible mitochondria-specific protein degradation in vivo
Authors: Sanyal Swastika , Kouznetsova Anna , Ström Lena , Björkegren Camilla
Published: February 2024

Targeted protein degradation systems developed for eukaryotes employ cytoplasmic machineries to perform proteolysis. This has prevented mitochondria-specific analysis of proteins that localize to multiple locations, for example, the mitochondria and the nucleus. Here, we present an inducible mitochondria-specific protein degradation system in Saccharomyces cerevisiae based on the Mesoplasma florum Lon (mf-Lon) protease and its corresponding ssrA tag (called PDT). We show that mitochondrially targeted mf-Lon protease efficiently and selectively degrades a PDT-tagged reporter protein localized to the mitochondrial matrix. The degradation can be induced by depleting adenine from the medium, and tuned by altering the promoter strength of the MF-LON gene. We furthermore demonstrate that mf-Lon specifically degrades endogenous, PDT-tagged mitochondrial proteins. Finally, we show that mf-Lon-dependent PDT degradation can also be achieved in human mitochondria. In summary, this system provides an efficient tool to selectively analyze the mitochondrial function of dually localized proteins.
Distinct functional constraints driving conservation of the cofilin N-terminal regulatory tail
Authors: Sexton Joel A. , Potchernikov Tony , Bibeau Jeffrey P. , Casanova-Sepúlveda Gabriela , Cao Wenxiang , Lou Hua Jane , Boggon Titus J. , De La Cruz Enrique M. , Turk Benjamin E.
Published: February 2024

Cofilin family proteins have essential roles in remodeling the cytoskeleton through filamentous actin depolymerization and severing. The short, unstructured N-terminal region of cofilin is critical for actin binding and harbors the major site of inhibitory phosphorylation. Atypically for a disordered sequence, the N-terminal region is highly conserved, but specific aspects driving this conservation are unclear. Here, we screen a library of 16,000 human cofilin N-terminal sequence variants for their capacity to support growth inS. cerevisiaein the presence or absence of the upstream regulator LIM kinase. Results from the screen and biochemical analysis of individual variants reveal distinct sequence requirements for actin binding and regulation by LIM kinase. LIM kinase recognition only partly explains sequence constraints on phosphoregulation, which are instead driven to a large extent by the capacity for phosphorylation to inactivate cofilin. We find loose sequence requirements for actin binding and phosphoinhibition, but collectively they restrict the N-terminus to sequences found in natural cofilins. Our results illustrate how a phosphorylation site can balance potentially competing sequence requirements for function and regulation.
A genome and gene catalog of the aquatic microbiomes of the Tibetan Plateau
Authors: Cheng Mingyue , Luo Shuai , Zhang Peng , Xiong Guangzhou , Chen Kai , Jiang Chuanqi , Yang Fangdian , Huang Hanhui , Yang Pengshuo , Liu Guanxi , Zhang Yuhao , Ba Sang , Yin Ping , Xiong Jie , Miao Wei , Ning Kang
Published: February 2024

The Tibetan Plateau supplies water to nearly 2 billion people in Asia, but climate change poses threats to its aquatic microbial resources. Here, we construct the Tibetan Plateau Microbial Catalog by sequencing 498 metagenomes from six water ecosystems (saline lakes, freshwater lakes, rivers, hot springs, wetlands and glaciers). Our catalog expands knowledge of regional genomic diversity by presenting 32,355 metagenome-assembled genomes that de-replicated into 10,723 representative genome-based species, of which 88% were unannotated. The catalog contains nearly 300 million non-redundant gene clusters, of which 15% novel, and 73,864 biosynthetic gene clusters, of which 50% novel, thus expanding known functional diversity. Using these data, we investigate the Tibetan Plateau aquatic microbiome’s biogeography along a distance of 2,500 km and >5 km in altitude. Microbial compositional similarity and the shared gene count with the Tibetan Plateau microbiome decline along with distance and altitude difference, suggesting a dispersal pattern. The Tibetan Plateau Microbial Catalog stands as a substantial repository for high-altitude aquatic microbiome resources, providing potential for discovering novel lineages and functions, and bridging knowledge gaps in microbiome biogeography.
Giant electrostriction-like response from defective non-ferroelectric epitaxial BaTiO3 integrated on Si (100)
Authors: Parate Shubham Kumar , Vura Sandeep , Pal Subhajit , Khandelwal Upanya , Sandilya Ventrapragada Rama Satya , Rai Rajeev Kumar , Molleti Sri Harsha , Kumar Vishnu , Patil Girish , Jain Mudit , Mallya Ambresh , Ahmadi Majid , Kooi Bart , Avasthi Sushobhan , Ranjan Rajeev , Raghavan Srinivasan , Chandorkar Saurabh , Nukala Pavan
Published: February 2024

Lead-free, silicon compatible materials showing large electromechanical responses comparable to, or better than conventional relaxor ferroelectrics, are desirable for various nanoelectromechanical devices and applications. Defect-engineered electrostriction has recently been gaining popularity to obtain enhanced electromechanical responses at sub 100 Hz frequencies. Here, we report record values of electrostrictive strain coefficients (M31) at frequencies as large as 5 kHz (1.04×10−14m2/V2at 1 kHz, and 3.87×10−15m2/V2at 5 kHz) using A-site and oxygen-deficient barium titanate thin-films, epitaxially integrated onto Si. The effect is robust and retained upon cycling upto 6 million times. Our perovskite films are non-ferroelectric, exhibit a different symmetry compared to stoichiometric BaTiO3and are characterized by twin boundaries and nano polar-like regions. We show that the dielectric relaxation arising from the defect-induced features correlates well with the observed giant electrostriction-like response. These films show large coefficient of thermal expansion (2.36 × 10−5/K), which along with the giantM31implies a considerable increase in the lattice anharmonicity induced by the defects. Our work provides a crucial step forward towards formulating guidelines to engineer large electromechanical responses even at higher frequencies in lead-free thin films.
Durable Janus membrane with on-demand mode switching fabricated by femtosecond laser
Authors: Cui Zehang , Zhang Yachao , Zhang Zhicheng , Liu Bingrui , Chen Yiyu , Wu Hao , Zhang Yuxuan , Cheng Zilong , Li Guoqiang , Yong Jiale , Li Jiawen , Wu Dong , Chu Jiaru , Hu Yanlei
Published: February 2024

Despite their notable unidirectional water transport capabilities, Janus membranes are commonly challenged by the fragility of their chemical coatings and the clogging of open microchannels. Here, an on-demand mode-switching strategy is presented to consider the Janus functionality and mechanical durability separately and implement them by simply stretching and releasing the membrane. The stretching Janus mode facilitates unidirectional liquid flow through the hydrophilic micropores-microgrooves channels (PG channels) fabricated by femtosecond laser. The releasing protection mode is designed for the in-situ closure of the PG channels upon encountering external abrasion and impact. The protection mode imparts the Janus membrane robustness to reserve water unidirectional penetration under harsh conditions, such as 2000  cycles mechanical abrasion, 10 days exposure in air and other rigorous tests (sandpaper abrasion, finger rubbing, sand impact and tape peeling). The underlying mechanism of gridded grooves in protecting and enhancing water flow is unveiled. The Janus membrane serves as a fog collector to demonstrate its unwavering mechanical durability in harsh real-world conditions. The presented design strategy could open up new possibilities of Janus membrane in a multitude of applications ranging from multiphase separation devices to fog harvesting and wearable health-monitoring patches.
Phase-engineered synthesis of atomically thin te single crystals with high on-state currents
Authors: Zhou Jun , Zhang Guitao , Wang Wenhui , Chen Qian , Zhao Weiwei , Liu Hongwei , Zhao Bei , Ni Zhenhua , Lu Junpeng
Published: February 2024

Multiple structural phases of tellurium (Te) have opened up various opportunities for the development of two-dimensional (2D) electronics and optoelectronics. However, the phase-engineered synthesis of 2D Te at the atomic level remains a substantial challenge. Herein, we design an atomic cluster density and interface-guided multiple control strategy for phase- and thickness-controlled synthesis of α-Te nanosheets and β-Te nanoribbons (from monolayer to tens of μm) on WS2 substrates. As the thickness decreases, the α-Te nanosheets exhibit a transition from metallic to n-type semiconducting properties. On the other hand, the β-Te nanoribbons remain p-type semiconductors with an ON-state current density (ION) up to ~ 1527 μA μm−1 and a mobility as high as ~ 690.7 cm2 V−1 s−1 at room temperature. Both Te phases exhibit good air stability after several months. Furthermore, short-channel (down to 46 nm) β-Te nanoribbon transistors exhibit remarkable electrical properties (ION = ~ 1270 μA μm−1 and ON-state resistance down to 0.63 kΩ μm) at Vds = 1 V.
A 30-m annual corn residue coverage dataset from 2013 to 2021 in Northeast China
Authors: Dong Yi , Xuan Fu , Huang Xianda , Li Ziqian , Su Wei , Huang Jianxi , Li Xuecao , Tao Wancheng , Liu Hui , Chen Jiezhi
Published: February 2024

Crop residue cover plays a key role in the protection of black soil by covering the soil in the non-growing season against wind erosion and chopping for returning to the soil to increase organic matter in the future. Although there are some studies that have mapped the crop residue coverage by remote sensing technique, the results are mainly on a small scale, limiting the generalizability of the results. In this study, we present a novel corn residue coverage (CRC) dataset for Northeast China spanning the years 2013–2021. The aim of our dataset is to provide a basis to describe and monitor CRC for black soil protection. The accuracy of our estimation results was validated against previous studies and measured data, demonstrating high accuracy with a coefficient of determination (R2) of 0.7304 and root mean square error (RMSE) of 0.1247 between estimated and measured CRC in field campaigns. In addition, it is the first of its kind to offer the longest time series, enhancing its significance in long-term monitoring and analysis.
Multimodal single-neuron, intracranial EEG, and fMRI brain responses during movie watching in human patients
Authors: Keles Umit , Dubois Julien , Le Kevin J. M. , Tyszka J. Michael , Kahn David A. , Reed Chrystal M. , Chung Jeffrey M. , Mamelak Adam N. , Adolphs Ralph , Rutishauser Ueli
Published: February 2024

We present a multimodal dataset of intracranial recordings, fMRI, and eye tracking in 20 participants during movie watching. Recordings consist of single neurons, local field potential, and intracranial EEG activity acquired from depth electrodes targeting the amygdala, hippocampus, and medial frontal cortex implanted for monitoring of epileptic seizures. Participants watched an 8-min long excerpt from the video “Bang! You’re Dead” and performed a recognition memory test for movie content. 3 T fMRI activity was recorded prior to surgery in 11 of these participants while performing the same task. This NWB- and BIDS-formatted dataset includes spike times, field potential activity, behavior, eye tracking, electrode locations, demographics, and functional and structural MRI scans. For technical validation, we provide signal quality metrics, assess eye tracking quality, behavior, the tuning of cells and high-frequency broadband power field potentials to familiarity and event boundaries, and show brain-wide inter-subject correlations for fMRI. This dataset will facilitate the investigation of brain activity during movie watching, recognition memory, and the neural basis of the fMRI-BOLD signal.
Cross-talk between disulfidptosis and immune check point genes defines the tumor microenvironment for the prediction of prognosis and immunotherapies in glioblastoma
Authors: Zhou Yanjun , Qin Xue , Hu Qunchao , Qin Shaolei , Xu Ran , Gu Ke , Lu Hua
Published: February 2024

Disulfidptosis is a condition where dysregulated NAPDH levels and abnormal accumulation of cystine and other disulfides occur in cells with high SLC7A11 expression under glucose deficiency. This disrupts normal formation of disulfide bonds among cytoskeletal proteins, leading to histone skeleton collapse and triggering cellular apoptosis. However, the correlation between disulfidptosis and immune responses in relation to glioblastoma survival rates and immunotherapy sensitivity remains understudied. Therefore, we utilized The Cancer Genome Atlas and The Chinese Glioma Genome Atlas to identify disulfidptosis-related immune checkpoint genes and established an overall survival (OS) prediction model comprising six genes: CD276, TNFRSF 14, TNFSF14, TNFSF4, CD40, and TNFRSF18, which could also be used for predicting immunotherapy sensitivity. We identified a cohort of glioblastoma patients classified as high-risk, which exhibited an upregulation of angiogenesis, extracellular matrix remodeling, and epithelial-mesenchymal transition as well as an immunosuppressive tumor microenvironment (TME) enriched with tumor associated macrophages, tumor associated neutrophils, CD8 + T-cell exhaustion. Immunohistochemical staining of CD276 in 144 cases further validated its negative correlation with OS in glioma. Disulfidptosis has the potential to induce chronic inflammation and an immunosuppressive TME in glioblastoma.
A real-time field bus architecture for multi-smart-motor servo system
Authors: Huang Zhichao , Qiu Song , Wang Bangji , Liu Qingxiang
Published: February 2024

The multi-motor servo system (MMSS) is an electro-mechanical system widely used in various fields, including electric vehicles, robotics, and industrial machinery. Depending on the application, the number of motors in the system can range from several dozens to tens of thousands, which imposes additional communication demands. Thus, ensuring synchronization and control precision of the system requires addressing the challenge of guaranteeing the performance and reliability of communication among motors in the MMSS. In this paper, we design a smart servo motor (SSM) to upgrade the system to the multi-smart-motor servo system (MSMSS) based on a distributed real-time field bus architecture, namely, Multi-Motor Bus (MMB) architecture. The proposed MMB architecture is lightweight and stable, providing real-time support for Control Area Network connections to a central user computer and inter-integrated circuit connections to SSM units. This MMB architecture facilitates the synchronization of command transmission across SSMs and ensures the consistency of motors in the MSMSS. Additionally, a serial experiments to examine 3 key system performance and reliability characteristics are conducted, including command transmission time, transmission jitters, and rotation consistency. The analysis of these characteristics demonstrates the system’s potential and feasibility to be applicable in industry.
Bioinformatic analysis of endometrial miRNA expression profile at day 26–28 of pregnancy in the mare
Authors: Sadowska Agnieszka , Molcan Tomasz , Wójtowicz Anna , Lukasik Karolina , Pawlina-Tyszko Klaudia , Gurgul Artur , Ferreira-Dias Graca , Skarzynski Dariusz J. , Szóstek-Mioduchowska Anna
Published: February 2024

The establishment of the fetomaternal interface depends on precisely regulated communication between the conceptus and the uterine environment. Recent evidence suggests that microRNAs (miRNAs) may play an important role in embryo-maternal dialogue. This study aimed to determine the expression profile of endometrial miRNAs during days 26–28 of equine pregnancy. Additionally, the study aimed to predict target genes for differentially expressed miRNAs (DEmiRs) and their potential role in embryo attachment, adhesion, and implantation. Using next-generation sequencing, we identified 81 DEmiRs between equine endometrium during the pre-attachment period of pregnancy (day 26–28) and endometrium during the mid-luteal phase of the estrous cycle (day 10–12). The identified DEmiRs appear to have a significant role in regulating the expression of genes that influence cell fate and properties, as well as endometrial receptivity formation. These miRNAs include eca-miR-21, eca-miR-126-3p, eca-miR-145, eca-miR-451, eca-miR-491-5p, members of the miR-200 family, and the miRNA-17-92 cluster. The target genes predicted for the identified DEmiRs are associated with ion channel activity and sphingolipid metabolism. Furthermore, it was noted that the expression of mucin 1 and leukemia inhibitory factor, genes potentially regulated by the identified DEmiRs, was up-regulated at day 26–28 of pregnancy. This suggests that miRNAs may play a role in regulating specific genes to create a favorable uterine environment that is necessary for proper attachment, adhesion, and implantation of the embryo in mares.
Digital economy structuring for sustainable development: the role of blockchain and artificial intelligence in improving supply chain and reducing negative environmental impacts
Authors: Hong Zexin , Xiao Kun
Published: February 2024

In the current global context of environmental degradation and resource constraints, the pursuit of sustainable development has become an imperative. One avenue that holds promise for achieving this objective is the application of digital technologies, which have the potential to decouple economic growth from its carbon footprint. However, it is crucial to ensure that these technologies are designed and governed in a prudent manner, with a strong alignment to environmental priorities. This study focuses on exploring the potential roles of blockchain and artificial intelligence (AI) in supply chain coordination and impact mitigation. Furthermore, they have the capacity to incentivize recycling and circular business models, as well as facilitate carbon accounting and offsetting. To fully realize these benefits, it is essential to deploy these technologies within inclusive collaborative frameworks that take into consideration social and ecological considerations. The study also offers policy recommendations that highlight key leverage points for digital innovation, enabling countries to embark on smart and green industrial transformation pathways. By harnessing the potential of blockchain and AI in supply chains, governments can promote transparency, traceability, and accountability, thereby fostering sustainable practices and reducing environmental impacts. Incorporating blockchain and AI technologies into supply chain approaches leads to a substantial improvement in efficiency, as demonstrated by a numerical analysis. In conclusion, the integration of innovative digital technologies offers significant opportunities to optimize production systems and economic activity while prioritizing sustainability objectives for the betterment of society and the environment. These technologies have the potential to mitigate environmental externalities by addressing information imbalances within global supply chains. However, it is essential to prioritize inclusive governance that emphasizes democratic participation to mitigate any unintended negative consequences, especially for vulnerable communities. By ensuring inclusive decision-making processes, we can maximize the positive impact of these technologies while minimizing potential harm.
Therapeutic effect of knee extension exercise with single-joint hybrid assistive limb following total knee arthroplasty: a prospective, randomized controlled trial
Authors: Maeda Takaya , Sasaki Eiji , Kasai Takayuki , Igarashi Shigesato , Wakai Yuji , Sasaki Tomoyuki , Tsuda Eiichi , Ishibashi Yasuyuki
Published: February 2024

The single-joint hybrid assistive limb (HAL-SJ), an exoskeletal robotic suit, offers functional improvement. In this prospective randomized controlled trial, we investigated the therapeutic effects of knee extension exercises using the HAL-SJ after total knee arthroplasty (TKA). Seventy-six patients with knee osteoarthritis were randomly assigned to HAL-SJ or conventional physical therapy (CPT) groups. The HAL-SJ group underwent exercise using the HAL-SJ for 10 days postoperatively, in addition to CPT; the CPT group underwent only CPT. Pain intensity and active and passive knee extension angles were evaluated preoperatively and on postoperative days 1–10 and weeks 2 and 4. Performance tests and Knee Injury and Osteoarthritis Outcome Scores (KOOS) were evaluated preoperatively and at postoperative weeks 2 and 4. Statistical analysis showed that the HAL-SJ group significantly improved active and passive knee extension angles compared with the CPT group. The HAL-SJ group showed immediate improvement in active knee extension angle through day 5. There were no significant differences in results between the performance tests and KOOS. Knee extension exercises with the HAL-SJ improved knee pain and the angle of extension in the acute phase after TKA.
An efficient and accurate semi-analytical matching technique for waveguide-fed antennas
Authors: Negri Edoardo , Fuscaldo Walter , Tofani Silvia , Burghignoli Paolo , Galli Alessandro
Published: February 2024

Several RF and microwave radiating devices, such as horn antennas, Fabry–Perot cavity antennas, and aperture-fed focusing devices, are excited through rectangular waveguides. The impedance matching of the overall system (from the waveguide feed to the radiating aperture) is a task of crucial importance that is often addressed by means of brute-force parameter-sweep full-wave analyses or blind optimization algorithms. In both cases, a significant amount of memory and time resources are required. For this purpose, we propose here a simple, yet effective solution, which only requires a single full-wave simulation and a semi-analytical procedure. The former is used to retrieve the antenna input impedance at the end of the waveguide port excitation. The semi-analytical procedure consists in a transmission-line equivalent circuit that models two waveguide discontinuities (namely two capacitive irises) within the waveguide section, whose position and geometric features are finely tuned to obtain a satisfactory impedance matching around the working frequency. The proposed method is shown to be effective in diverse and attractive application-oriented contexts, from the impedance matching of a Fabry–Perot cavity antenna to that of a wireless near-field link between two aperture-fed focusing devices. A remarkable agreement between full-wave simulations and numerical results is found in all cases. Thanks to its versatility, simplicity, and a rather low demand of computational resources, the proposed approach may become an essential tool for the effective design of waveguide-fed antennas.
High-throughput screening assay for PARP-HPF1 interaction inhibitors to affect DNA damage repair
Authors: Dhakar Saurabh S. , Galera-Prat Albert , Lehtiö Lari
Published: February 2024

ADP-ribosyltransferases PARP1 and PARP2 play a major role in DNA repair mechanism by detecting the DNA damage and inducing poly-ADP-ribosylation dependent chromatin relaxation and recruitment of repair proteins. Catalytic PARP inhibitors are used as anticancer drugs especially in the case of tumors arising from sensitizing mutations. Recently, a study showed that Histone PARylation Factor (HPF1) forms a joint active site with PARP1/2. The interaction of HPF1 with PARP1/2 alters the modification site from Aspartate/Glutamate to Serine, which has been shown to be a key ADP-ribosylation event in the context of DNA damage. Therefore, disruption of PARP1/2-HPF1 interaction could be an alternative strategy for drug development to block the PARP1/2 activity. In this study, we describe a FRET based high-throughput screening assay to screen inhibitor libraries against PARP-HPF1 interaction. We optimized the conditions for FRET signal and verified the interaction by competing the FRET pair in multiple ways. The assay is robust and easy to automate. Validatory screening showed the robust performance of the assay, and we discovered two compounds Dimethylacrylshikonin and Alkannin, with µM inhibition potency against PARP1/2-HPF1 interaction. The assay will facilitate the discovery of inhibitors against HPF1-PARP1/2 complex and to develop potentially new effective anticancer agents.
Integrated alternative approaches to select feed-efficient rainbow trout families to enhance the plant protein utilization
Authors: Kajbaf Kimia , Overturf Ken , Kumar Vikas
Published: February 2024

Improving feed utilization efficiency is a challenge in aquaculture. Therefore, we developed an indirect benchmark to use in selecting trout for improved efficiency of feed utilization on plant protein (soy)-based diets, with the long-term goal of reducing the cost of commercial trout production. We used a four-part integrative approach to identify feed efficient individuals among 1595 fish coming from 12 genetically selected families by establishing the phenotypic relationship between feed conversion ratio (FCR) and body weight variations using compensatory feeding regimes. Additionally, we examined the nutritional composition of fish filet for each efficiency phenotype during the compensatory regimen. Our findings showed that the fish with the lowest weight loss during a feed deprivation period and the highest weight gain during the refeeding period (FD−/RF +) demonstrated the lowest FCR (FCR = 0.99) and consisted of individuals from several lines. This finding confirms the possibility of improving feed efficiency in mixed lines. Although feeding period has an effect on nutritional composition of fillet, such selection criteria did not show an effect on groups. Overall, successful selection for the improvement of feed efficiency will have a broad application to commercial fish selective breeding programs, leading to increased aquaculture sustainability in the long run.