bluuebunny/crossref_metadata_2025 huggingface dataset:
Population genetic structure of the gynodioecious Thymus vulgaris L. (Labiatae) in southern France
Authors: Tarayre M. , Thompson J. D.
Published: December 2004

In a self‐compatible gynodioecious species, the abundance of female plants (which are obligate outcrossers) relative to hermaphrodites (which may self and outcross) may be a critical factor influencing genetic diversity and population structure. In the gynodioecious Thymus vulgaris L., female frequency varies from 5 to 95%, providing a suitable model to examine this issue. In this study, we use allozyme markers to (1) evaluate the relationship between female frequency, genetic diversity and population structure, (2) determine whether females and hermaphrodites vary in heterozygote deficiency and (3) examine whether other factors such as plant density are related to heterozygote deficiency. Twenty three natural populations, with female frequencies ranging from 11 to 92%, were sampled in and around the St‐Martin‐de‐Londres basin in southern France. Based on four polymorphic allozyme loci, we found no significant correlation between female frequency and heterozygote deficiency. A significant (P < 0.05) FIS value over loci and over populations of 0.11 was detected. The FIS value per population showed a significant heterozygote deficiency in 11 of the 23 populations. However, no significant difference between female and hermaphrodite FIS values was found. A significant heterozygote deficiency only occurred in populations of intermediate density. There was little differentiation among populations (FST = 0.038) nor among subpopulations within each population. The significant FIS values are thus mostly due to inbreeding effects. The lack of a correlation between FIS values and female frequency may be due to outcrossing in hermaphrodites and/or restoration of male fertility which may occur to a greater extent at low female frequency. The similarity of female and hermaphrodite FIS values indicates that females may occasion high levels of biparental inbreeding.
Phylogenetic relationships in Monanthes (Crassulaceae) based on morphological, chloroplast and nuclear DNA variation
Authors: Mes T. H. M. , Wijers G.‐J. , Hart H. 't
Published: December 2004

Phylogenetic relationships of all 10 recognized taxa of the genus Monanthes which is endemic to the Canary Islands and Salvage Islands, were investigated using the four data sets: morphology, sequences of the chloroplast DNA trnL (UAA) — trnF (GAA) intergenic spacer, ITS2 sequences of the nuclear ribosomal region and Random Amplified Polymorphic DNAs (RAPDs). In contrast to the molecular data, the morphological data were internally inconsistent which probably resulted from parallel or convergent evolution of morphological characters. The molecular data sets indicated that the genus is not monophyletic due to inclusion of the annual M. icterica which is the putative sister taxon of Aichryson, that M. polyphylla is the sister taxon of the perennial species of the genus, that M. muralis from Hierro is of allotetraploid origin and that M. lowei, M. minima, M. brachycaulos, M. laxiflora, M. anagensis and M. muralis from La Palma are closely related. Combined ITS2 sequences, trnL — trnF sequences and morphological data indicated that the relationships among three types of perennial growth forms, i.e. tiny rosettes, small, branched shrubs and diffuse branches shrublets, are highly dependent on the outgroup used. After deletion of the most distant outgroup and a taxon of alleged hybrid origin (M. muralis) relationships among the growth forms of Monanthes still could not be consistently resolved.
The ratio of replacement to silent divergence and tests of neutrality
Authors: Nielsen R.
Published: December 2004

Comparisons of replacement to silent divergence have been used in a variety of studies aimed at detecting selection. Here, such comparisons are shown to be very sensitive to the pattern of rate variation in replacement sites. Saturation may play an important role even at surprisingly low levels of divergence if the substitution rate varies across replacement sites. For example, saturation in replacement sites may be of importance in the evolution of the HIV‐1 envelope gene. However, the pattern of saturation in replacement and silent sites may, in itself, provide valuable insight into the causes of DNA evolution. 210 DNA sequences from 15 different loci/systematic groups are analyzed, and evidence for positive selection is demonstrated in at least one of these data sets, through an analysis of the distribution of substitution rates along the sequence.
The basic body plan of arthropods: insights from evolutionary morphology and developmental biology
Authors: Zrzavý J. , Štys P.
Published: December 2004

Phylogenetic, morphological, and developmental data concerning the Arthropoda are reviewed and discussed with the aim of reconstructing the ancestral body plan of the mandibulate arthropods (Myriapoda, Hexapoda, Crustacea). Comparative morphology as well as embryology of malacostracans and hexapods (cell‐lineages, patterns of mitotic domains, patterns of en‐stripe formation, expression zones of pair‐rule, homeotic, and gap‐like genes) suggest that (a) the basic boundary subdividing the mandibulate body into the primary embryonic regions, anterior protocephalon and posterior protocorm, runs anteriorly to parasegment PS1 (=within the mandibular segment); (b) protocephalon (pregnathal region) probably is not a unitary body region; (c) maxillary segments are closely related to the postgnathal trunk segments; (d) the “typical” mandibulate head (pregnathal‐mandibular‐maxillary) is not developed in all Mandibulata and has evolved several times in parallel; and (e) postcephalic tagmosis is much less conserved, and probably more recent, than tagmosis of more anterior areas. The arachnomorphan anterior tagma, the prosoma, is compared with the hypothesized ancestral mandibulate head.
The effect of life cycle stage and genotype on desiccation tolerance in the colonizing parthenogenetic cockroach Pycnoscelus surinamensis and its sexual ancestor P. indicus
Authors: Gade B. , Parker E. D.
Published: December 2004

We compared the desiccation tolerance of nymphs of diploid and triploid clones of the colonizing parthenogenetic cockroach, Pycnoscelus surinamensis, and strains of its sexual ancestor, P. indicus, as a test of the general‐purpose genotype hypothesis and the polyploidy hypothesis for geographic parthenogenesis in this species complex. Desiccation tolerance is strongly associated with nymphal size. Clones of P. surinamensis are highly variable in nymphal desiccation tolerance, adjusted for body weight by analysis of covariance. This heterogeneity is mirrored by significant differences among recently isolated sublines of a lab population of P. indicus. As a group, the clones are not more tolerant than the sexual strains. Likewise, the four triploid clones were not more resistant to desiccation than the four diploid clones tested. A second experiment revealed a negative association between adult and last instar desiccation tolerance, due to developmental factors not associated with size. These patterns of variation in the sexual and parthenogenetic forms are consistent with the conclusion that extensive genetic variation in desiccation tolerance in the sexual ancestor has been preserved in the clonal lineages, but that desiccation tolerance has not been selected on strongly during the dispersal of clones of P. surinamensis.
Coevolution of traits determining migratory tendency: correlated response of a critical enzyme, juvenile hormone esterase, to selection on wing morphology
Authors: Fairbairn D. J. , Yadlowski D. E.
Published: December 2004

Migratory tendency in insects is a complex trait, composed of a suite of correlated behavioural, physiological, morphological and life history traits. We investigate the genetic and physiological basis of the coevolution of this suite of traits using laboratory lines of the wing dimorphic cricket, Gryllus firmus, selected for increasing and decreasing incidence of macroptery. Selection on wing morphology has produced strong direct responses in proportion macropterous as well as correlated (indirect) responses in wing muscle histolysis, flight propensity and fecundity. We investigate the hypothesis that these responses have been mediated by changes in the metabolism of juvenile hormone (JH) during the final nymphal stadium (the critical period for wing morph determination). Previous studies of Gryllus sp. have established that JH titre in this period is determined primarily by the activity of the degradative enzyme, juvenile hormone esterase (JHE). Assays of JHE activity in the final nymphal stadium of the replicated control and selected lines demonstrate highly significant differences in both mean activity and the probability of macroptery for a given level of activity (i.e., the threshold activity required to induce wing formation). These correlated responses in JH metabolism support the general hypothesis that the correlations among traits determining migratory tendency result at least in part from the common influence of JH during the final nymphal stadium. We discuss these results in the context of the quantitative genetic model for the evolution of polygenic, dichotomous traits (the threshold model), and present four general predictions concerning the coevolution of traits associated with ecological (i.e., trophic, life history, behavioural) dimorphisms.
Testing multivariate patterns of within‐island differentiation in Podarcis dugesii from Madeira
Authors: Báez M. , Brown R. P.
Published: December 2004

Podarcis dugesii is a polymorphic species found on the ecologically‐heterogeneous Atlantic island of Madeira. Patterns of geographic variation in size‐free body dimensions (body shape), scalation, and size were portrayed on maps with isophene contours. There was no dominant pattern of among‐site variation as seen in several other island lizards, although some linear combinations of morphological variables showed evidence of clines towards the east coast. Multivariate statistical techniques were developed to evaluate whether morphological variation contained an ecology‐related spatial pattern, after removal of the effects of statistical non‐independence of studied populations. Specifically, a partial correlation matrix comparison method provided evidence to support a proposed elevation model of among‐site divergence in scalation and body size, with both an alternative rainfall model and spatial non‐independence held constant. Similar divergence in scalation has been observed in other lizard species on other island archipelagos as well on some continental areas. The rainfall model was rejected for both body shape and scalation. The degree of within‐population polymorphism in body shape and scalation showed no clear geographic trends in general, although the elevation and rainfall models could not be rejected for female scalation.
Genetics of sex allocation in Mimulus (Scrophulariaceae)
Authors: Fenster C. B. , Carr D. E.
Published: December 2004

Theoretical models of the evolution of resource allocation patterns to male and female function make the assumption that there are inherent trade‐offs between the two. Here we use a quantitative genetic approach to quantify trade‐offs between male and female function and to determine whether plant populations could readily respond to natural selection by quantifying the amount of genetic variation for pollen and ovule production. Both intra‐ and interspecific crossing designs were applied to two populations of the predominantly outcrossing Mimulus guttatus and two populations of the highly selfing congener, M. micranthus.

The only significant correlations observed among pollen number, pollen size and ovule number were positive. Positive genetic correlations among the traits were sometimes reduced after removing the effect of flower size but still no significant negative correlations were detected. These results suggest that positive correlations between pollen and ovule production may be due to the joint positive correlation of these characters with the resource pool available for pollen and ovule production, as reflected by flower size. Heritabilities were moderate to high for ovule production but low for pollen number and pollen size and suggest that responses to selection would differ between the two traits. Crosses between the species revealed that there are additional genetic factors contributing to differences between the two species for corolla width, vs. pollen:ovule ratio. This is consistent with the hypothesis that genetic variation for resource acquisition may in part be responsible for the overall lack of a negative correlation between pollen and ovule production and provides a genetic explanation for little evidence of trade‐offs between sexual functions in Mimulus.
Comparative evidence for a positive correlation between haematozoan prevalence and mortality in waterfowl
Authors: Sorci G. , Møller A. P.
Published: December 2004

Hamilton and Zuk (1982) suggested a new hypothesis to explain the evolution of secondary sexual characters, namely that male ornaments may represent honest signals of male capacity to resist parasites. Since then several authors have addressed the question of the role played by parasites in the evolution of host secondary sexual characters. Comparative analyses of Hamilton and Zuk's hypothesis have, however, failed to show the predicted positive association between parasitism levels and sexually‐selected traits. One possible explanation for this discrepancy involves a low pathogenicity of the parasites used to test the hypothesis. Here we show that haemosporidians are positively correlated with mortality rates in a sample of waterfowl, and that the correlation between the two variables is of similar magnitude in both males and females. Contrary to the expectations based on the Hamilton and Zuk's hypothesis, we did not find any correlation between plumage brightness and haemosporidian prevalence. These results indicate that haemosporidians may have a pathogenic effect on their avian hosts and that plumage brightness is likely to have evolved in response to ecological factors other than parasitism infections.
Life history evolution in Asobara tabida: plasticity in allocation of fat reserves to survival and reproduction
Authors: Ellers J. , Van Alphen J. J. M.
Published: December 2004

Life history variation can be genetically based, or it may be due to environmental effects on the phenotype. In this paper we examine life history variation in relation to differences in habitat in the parasitoid Asobara tabida. Differences in the spatial distribution of host patches, the length of the season, host suitability, and competition between parasitoids all contribute to the selection for differences in life history between strains from northern and southern Europe.

Strains were compared with respect to the allocation between reproduction and survival in experimental environments that varied with regard to the availability of food or to the number of hosts offered per day. Upon emergence parasitoids originating from southern Europe have higher egg loads and smaller fat reserves than parasitoids originating from northern Europe. Parasitoids from both southern and northern Europe show plasticity in allocation: food shortage causes a decrease in egg production, and rich breeding opportunities an increase in egg production. This plasticity is greater in the northern strain. Fat reserves play a central role in the physiology of this allocation. Fat can be used for both reproduction and survival. There is no oosorption, so once fat is allocated to reproduction it can no longer be used for survival. Differences in plasticity in allocation can therefore be considered as differences in the timing of egg production.
The relationship between eyespot shape and wing shape in the butterfly Bicyclus anynana: A genetic and morphometrical approach
Authors: Monteiro A. , Brakefield P. M. , French V.
Published: December 2004

The African butterfly, Bicyclus anynana, normally possesses circular eyespots on its wings. Artificial selection lines, which express ellipsoidal eyespots on the dorsal surface of the forewing, were used to investigate correlated changes in wing shape. Morphometric analysis of linear wing measurements and wing scale counts provided evidence that eyespot shape was correlated with localised shape changes in the corresponding wing‐cell, with overall shape changes in the wing, and with the density/arrangement of scales around the eyespot area.
Evolutionary aspects of migratory behavior in European warblers
Authors: Berthold Peter
Published: December 2004

During the past 20 years, European Sylvia warblers have been used for a model study of the control mechanisms of bird migration and of evolutionary aspects of migratory behavior. Endogenous annual rhythms (‘circannual’ rhythms) and photo‐period have proved to be the essential internal and external controlling factors. It is unknown whether this basic system, that also controls migration in other bird species, is currently evolutionarily stable or is instead adapting birds to the present slightly changing environmental conditions. Using the Blackcap, the control of partial migration in a bird species was analyzed. Two‐way selective breeding experiments demonstrated a large selection response and high heritability values. These experiments have also indicated that a partially migratory population can become either almost completely migratory, or sedentary, in two to five generations. Hence, genetic influences are very important and presumably dominant over environmental factors in the expression of migratory or sedentary behavior. The large selection response implies a strikingly high evolutionary potential with respect to strong selection pressures. Further, in the Blackcap, migratory orientation behavior (in addition to migratory activity) was immediately transmitted into a F1‐generation when a cross‐breeding experiment was performed using birds from a migratory and a resident population. The hybrids displayed their migratory activity along an axis that is used by their migratory parents. Finally, a rapidly developing novel migratory habit (new migratory direction to new wintering areas) in the Blackcap is discussed with respect to a positive feedback‐mechanism, possibly including a series of advantages leading to above‐average fitness.
Life history plasticity in the satyrine butterfly Lasiommata petropolitana: investigating an adaptive reaction norm
Authors: Gotthard K.
Published: December 2004

This study addresses the general hypothesis that insects living in seasonal environments should shorten development times at progressively later dates in the growth season, and that insects living outside equatorial areas should use daylength as a cue to determine the date. Diapause strategies and reaction norms relating the duration of larval development to daylength was investigated in a French population of the butterfly, Lasiommata petropolitana. The results are compared with those of an earlier study of the species in Sweden. Because of the diapausing strategy and phenology of the population, it was expected that an adaptive reaction norm relating larval time to daylength should have a positive slope, i.e. relatively shorter daylengths induce faster growth and development. This prediction was supported, and the reaction norm was qualitatively similar to the one found in Swedish populations. In the French population it was, however, shifted to a range of shorter photoperiods which corresponds to the regime of shorter daylengths in southern Europe. Shorter larval development times and high growth rates were associated with a reduction in pupal size, suggesting a trade off between time and size at pupation. There was no evidence of a trade off between growth rate and starvation endurance. The results suggests that the daylength‐dependent decision of what growth trajectory an individual larva will follow, is not made continuously but rather at one or a few occasions during larval development.

It is clear that larvae of L. petropolitana make developmental decisions in relation to the daylength they experience during larval growth. The result is a reaction norm that agrees closely to what is predicted by some life history models, suggesting that it is an adaptation for optimising life history traits in a seasonal environment.
Genetic population structure of two cryptic Gammarus fossarum types across a contact zone
Authors: Müller J.
Published: December 2004

Previous studies have revealed inconsistent results about the taxonomic status of European Gammarus fossarum forms. The variability in morphology and hybridization ability has not shown clear geographic patterns, whereas on a genetical basis two Central European G. fossarum forms have been proposed.

In the present study the genetic structure of G. fossarum populations was investigated across a natural contact zone. For the first time direct comparisons of allotopic versus syntopic populations were feasible. 24 Populations of G. fossarum plus 4 populations of G. pulex (as outgroup) were sampled along 2 transects across the contact zone. The genotypes of about 60 individuals per population were revealed by allozyme electrophoresis at 6 polymorphic loci.

Parallel step ‘clines’ in allele frequencies indicate secondary contact of the two G. fossarum forms. The level of genetic variation between the forms was comparable to an interspecific level (G. pulex versus G. fossarum). The pronounced genetic bipartition in syntopic G. fossarum populations and the lack of potential F1‐hybrids further corroborated the taxonomic status of the G. fossarum types. The geographic patterns of the genetic differentiation between and within the G. fossarum types, the allelic diversities and the genotypic disequilibria revealed recent introgression at the analysed loci to be insignificant. In addition it is shown that the population structure of the western G. fossarum type is out of equilibrium, which suggest a recent colonization of this type probably by displacement of the other type.
Effects of male genetic contribution and paternal investment to egg and hatchling size in the cricket, Gryllus firmus
Authors: Weigensberg I. , Carrière Y. , Roff D. A.
Published: December 2004

Egg provisions represent the complete energy supply of oviparous organisms from fertilization until hatching, and egg size is generally correlated with initial offspring size and a suite of other early fitness related traits. Since egg size is determined by the mother, little attention has been given to potential sources of paternal effects on either egg size or initial offspring size. This study considers two processes by which the sire can affect the egg size and/or initial body size of his offspring, in the multiply mated cricket, Gryllus firmus. The first is a paternal genetic effect, whereby differences in offspring genotype result in differences in the efficiency of metabolising available resources. The second is a paternal environmental effect, whereby the quality or size of paternal investment varies among male phenotypes and this is correlated with the size of eggs the females subsequently produce. Using a one‐locus two‐allele recessive mutation for pale eye colour as a marker, a mating experiment was designed which enabled the discrimination between eggs fertilized by two males mated simultaneously to a single female. The results of this experiment suggest that sire effects on egg and initial body size occur through both processes. Eggs fertilised by the two males were significantly different at day ten of development, suggesting that the genetic contribution of the sire is affecting embryonic body size. Further, a negative correlation was found between the head size of the pale eyed male and the size of all the eggs that the female laid, suggesting an effect of male size of the amount of nutrients the female receives from her mates. The results of this study suggest that paternal effects may be both more common and more profound than previously thought, and that studies examining early fitness traits that are correlated to egg size or initial body size, in oviparous animals, should consider the possibility and importance of the paternal contribution.
Heritability of sperm competition success in the bulb mite, Rhizoglyphus robini
Authors: Radwan J.
Published: December 2004

Multiple mating by females has been proposed to function as a form of mate‐choice, which implies that males should show heritable variation in sperm‐competitive abilities. In this study, repeatability and heritability of sperm competition success was estimated in the bulb mite, Rhizoglyphus robini. Fertilization success of males was estimated in competition with sperm of two other males. Males differed consistently in their sperm competition success, with repeatability estimated at 0.22. The heritability of sperm competition success was estimated using parent‐offspring regression, with the mean fertilization success from two matings used as a measure of each male's competitive ability. There was a significant association between the sperm competition success of fathers and sons. Narrow sense heritability (h2) was 0.284. This result supports the hypotheses proposing the multiple mating is selectively maintained in females by enhancing the reproductive success of their progeny.
The evolution of demographic tactics in lizards: a test of some hypotheses concerning life history evolution
Authors: Clobert J. , Garland T. , Barbault R.
Published: December 2004

We analyze, with an augmented data base, patterns of covariation of the three primary demographic parameters (age at maturity, fecundity, adult survival, all measured in the same unit of time) in lizards. This also constitutes a first attempt to use all three of these parameters for this group of species. We attempt to place these analyses in the framework of recent theories on life history evolution (Ferrière and Clobert, 1992; Charnov, 1993). Life history data were collected from the literature and from our original work, and a composite phylogeny was assembled, based on a variety of published sources. Using a phylogenetically based statistical method (independent contrasts), the allometric (log‐log) relationship of fecundity (and of clutch size) in relation to snout‐vent length was found to differ significantly between the two major clades of extant lizards, Iguania (43 species in our data set) and Scleroglossa (47 species). We therefore emphasize analyses done separately for the two clades. Without removing correlations with body size, the relationships between fecundity and survival, and between fecundity and age at maturity, were also found to differ between clades, which differs from Charnov's (1993) predictions. When correlations with body size were removed statistically, however, the two clades did not differ significantly in these relationships. In a principal components analysis (PCA) of the three demographic variables plus snout‐vent length, the first axis explained the majority (53–57%) of variation in both clades, while the second axis explained 27–31% of the variation and loaded mainly on fecundity. In a PCA of size‐adjusted demographic variables residuals (from log‐log regressions on snout‐vent length), the first axis explained 66–68% of the variation and was clearly interpretable as the classical “slow‐fast” continuum, which has been described in birds and mammals. The PCA of residuals did not provide clear evidence of additional significant patterns of covariation. However, the rate of evolution of mortality (size‐corrected), but not of fecundity or age at maturity, differed significantly between clades. Furthermore, fecundity and age at maturity, both corrected for variation in adult mortality (in addition to body size), were still significantly related, indicating the existence of other patterns of variation in these life history traits. In other words, the ratios between age at maturity and adult mortality, or between fecundity and adult mortality, were not found to be invariant, because the variation not accounted for by these ratios was significantly associated with variation in another variable. This result contradicts the prediction of Charnov (1993), and suggests the existence of other directions of evolution in these life history traits.
Mitochondrial DNA variability in viviparous and ovoviviparous populations of the urodele Salamandra salamandra
Authors: Dopazo H. , Boto L. , Alberch P.
Published: December 2004

Mitochondrial DNA analysis of 13 populations of S. salamandra along a transect across the North of the Iberian Peninsula showed values of divergence between haplotypes ranging from d = 0.41% to 5.91%. Phenetic and cladistic analysis grouped the isofemale lineages into two main clusters with contrasting phylogeographic patterns. The first group encompasses populations located at each extreme of the Iberian Peninsula. Despite the large geographic distance separating these populations, they exhibit only a minor degree of divergence among haplotypes. In contrast, much higher diversification, in both number of distinct haplotypes, and overall genetic divergence, was observed in the second group of phylogenetically related populations. Surprisingly, this process of radiation and divergence in mtDNA haplotypes occurred in populations in close geographic proximity. All populations sampled in this group are located within a 300 km range, in the central part of our transect across the Northern edge of the Peninsula. Most populations in the central range of our transect exhibit viviparous reproduction — which is derived and highly unusual among urodeles. The genetic distances measured among Asturian (central portion of our transect), viviparous populations are higher than the distances measured between the two main taxonomic clusters. A viviparous population showing an unusual level of mtDNA heterogenetiy is reported and the potential implications of this focus of localized variability are discussed. The dynamics of isofemale lineages among the two reproductive modes was further explored in combination with the previous allozyme data. Several nuclear markers suggest that major mtDNA divergences could be explained by long‐term extrinsic barriers to gene flow. Isofemale lineages indicate a narrow secondary contact zone among populations with different reproductive patterns. The existence of viviparous and ovovivparous populations sharing a common haplotype suggests that reproductive transition in S. salamandra could have arisen in absence of genetic mtDNA differentiation. We finally outline a genetic model system where the acquisition of water independence from a primitively aquatic dependent amphibian life cycle can be analyzed from a microevolutionary perspective.
Similarity, parsimony and conjectures of homology: The chelonian shoulder girdle revisited
Authors: Lee M. S. Y.
Published: December 2004

Much has been written about the definition and recognition of biological homology. Homology is usually defined as similarity inherited from a common ancestor (e.g., papers in Hall, 1994). It is recognised through cladistic analysis: Patterson (1982) and de Pinna (1991) have cogently argued that homology can be equated with synapomorphy (a shared evolutionary novelty uniting a monophyletic group). Such identification involves two stages: first, a possible homology is proposed on the basis of morphological similarity. This similarity might be structural, topological, developmental, or any combination thereof. Next, a cladistic analysis is performed, involving the trait in question and all other informative traits identified. If the trait is congruent with the resultant phylogeny, it is accepted as homologous in all taxa which possess it. If the trait is incongruent with the phylogeny, it is interpreted as homoplasious in certain taxa. This has been termed the test of congruence (Patterson, 1982; de Pinna, 1991).

Rieppel (1996) has recently suggested that the test of congruence might be circular, and that as a result certain inferences about the evolution of the chelonian shoulder girdle (Lee, 1996) are poorly substantiated. Here I argue that the test of congruence is not circular, and that the disputed conclusions about the evolution of chelonian shoulder girdle can be defended on the basis of parsimony. More generally, I suggest how considerations of parsimony can and should be used to arbitrate between conflicting conjectures of homology that are both congruent with an accepted phylogeny.
Genetic constraints at the metamorphic boundary: Morphological development in the wood frog, Rana sylvatica
Authors: Phillips P. C.
Published: December 2004

Organisms with complex life‐cycles often experience very different environments in different phases of their life. Genes expressed in more than one phase could potentially create a conflict or constraint on evolutionary change if the pattern of selection on those genes were different in the different phases. The potential importance of this type of constraint across metamorphosis in frogs was assessed by measuring the genetic correlation between several morphological traits in both larval and juvenile Rana sylvatica. Genetic correlations within a stage tended to be moderately high and significant whereas correlations across stages were low and not significant. Errors on the genetic parameters make it impossible to prove that there are no genetic constraints across metamorphosis in this population of frogs, but the results are consistent with the hypothesis that gene expression and developmental regulation are partitioned separately before and after metamorphosis.
Evolution and biogeography of the genus Tarentola (Sauria: Gekkonidae) in the Canary Islands, inferred from mitochondrial DNA sequences
Authors: Nogales M. , López M. , Jiménez‐Asensio J. , Larruga J. M. , Hernández M. , González P.
Published: December 2004

Sequences from fragments of the 12S ribosomal RNA and cytochrome b mitochondrial genes were used to analyze phylogenetic relationships among geckos of genus Tarentola from the Canary Islands. A surprisingly high level of within island differentiation was found in T. delalandii in Tenerife and T. boettgeri in Gran Canaria. Molecular differentiation between populations of T. angustimentalis on Lanzarote and Fuerteventura, and between Moroccan and Iberian Peninsula T. mauritanica, also indicate that at least two subspecies should be recognized within each of them. Phylogenetic relationships among these species reveals a higher level of differentiation and a more complex colonization pattern than those found for the endemic genus Gallotia. Lack of evidence for the presence of T. boettgeri bischoffi on the island of Madeira does not seem to support the origin of T. delalandii, T. gomerensis and the canarian subspecies of T. boettgeri from this island, whereas molecular data confirms that T. angustimentalis is a sister species of the continental T. mauritanica. Several independent colonization events from the continent and the extinction of some species are probably responsible for the current distribution of Tarentola in the Canary Islands.
Inbreeding depression affects pollen performance in Cucurbita texana
Authors: Jóhannsson M. H. , Gates M. J. , Stephenson A. G.
Published: December 2004

Most studies of the effects of inbreeding focus on vegetative vigor and reproductive output through the female (fruit and seed) function. This study not only examines the effects of inbreeding on the female function but it also examines the effects of inbreeding on pollen performance both in vitro and in vivo. This study used Cucurbita texana, a wild gourd, and was performed under field conditions. In vivo performance was assessed by placing equal amounts of pollen from either the inbred or outcrossed plants onto a stigma together with pollen from a tester line. As with other studies, we found that outcrossed plants had greater reproductive output (male flowers and fruits) than plants produced from self pollinations. Unlike most studies of inbreeding depression, which mostly ignore the male function of plants, we also found that the pollen produced by outcrossed plants had faster pollen tube growth in vitro than the pollen produced on selfed plants. Moreover, pollen from selfed plants sired significantly fewer seeds than pollen from outcrossed plants under conditions of pollen competition (i.e. the number of pollen grains deposited onto the stigmas was larger than the number of available ovules). These findings indicate that inbreeding affects the performance of the resulting sporophytic generation and the microgametophytes they produce.
Does time until mating affect progeny sex ratio? A manipulative experiment with the parasitoid wasp Aphelinus asychis
Authors: Fauvergue X. , Hopper K. R. , Antolin M. F. , Kazmer D. J.
Published: December 2004

In haplodiploid organisms, unmated or sperm depleted females are “constrained” to produce only male progeny. If such constrained females reproduce, the population sex ratio will shift toward males and unconstrained females will be selected to produce more females. Assuming that a female's own time spent constrained is an index of the population‐wide level of constrained oviposition, and that constrained and unconstrained females reproduce at the same rate, the proportion of sons that females produce when unconstrained should decrease with increasing time spent constrained. Alternatively, if females cannot measure time spent constrained or if time spent constrained is not an index to the level of constrained oviposition in the population, the proportion of sons among progeny produced when unconstrained should not depend upon time spent constrained and should be female biased to an extent depending upon the average time spent constrained over evolutionary time. To test these predictions, we manipulated the amount of time spent virgin in the parasitoid wasp Aphelinus asychis Walker (Hymenoptera: Aphelinidae) and measured the number of males and females among progeny produced before and after mating. First, we found no interaction between age and age at mating in their effect on fecundity, which suggests that mating does not change fecundity. Second, we found that females mated at 8 days and 15 days produced equal sex ratios after mating but these were slightly more female biased than the sex ratios of females mated at 1 day. This observed “step response” suggests that females may perceive time from emergence to mating as a discrete rather than a continuous variable (i.e., short versus long), or that females do not perceive time per se but assess their age class (i.e., young versus old) at the time of mating.
Models of sexual and asexual coexistence in aphids based on constraints
Authors: Rispe C. , Pierre J.‐S. , Simon J.‐C. , Gouyon P.‐H.
Published: December 2004

Two models are presented to test the hypothesis that in aphids, a particular constraint (the necessity to resist frost) could be the proximal cause for the maintenance of sex. Both models are based on temporal variability in winter survival of asexuals.

They show that:

only cyclical parthenogenesis is maintained below a threshold frequency of mild winters, because of the cold‐resistance of sexually‐produced eggs.

above a second threshold, only obligate parthenogenesis is maintained.

in‐between, the first model predicts a mixed evolutionarily stable strategy (ESS). This would reflect well the geographic distribution of the different types of reproduction. The second model, based on the genetic control of the reproduction system in two aphid species, predicts the maintenance of polymorphism with fluctuating proportions of the two life‐cycles. Males produced by obligate parthenogens play an essential role in this equilibrium (no stable polymorphism exists if this male production is set to zero). The value of the lowest possible fitness achieved by overwintering asexuals is critical.
The quantitative genetics of growth in a field cricket
Authors: Simons A. M. , Carrière Y. , Roff D. A.
Published: December 2004

Because of its relationship with both development time and adult size, the rate of growth in determinately growing organisms is an important aspect of their life histories. We reared sixty‐nine families of Gryllus pennsylvanicus derived from a natural population and found significant genetic variation in growth rate as estimated by the slope of linearized growth trajectories. We found no evidence for a genetic tradeoff between rate of growth and survival, nor rate of growth and fecundity. In principle, adult size may be determined both by the rate of growth and the time taken by the nymphs to develop. Our data indicate that variation in adult size is explained by variation in growth rate, not by variation in development time. We conclude with a discussion of the plausible explanations for the presence of genetic variation in growth rate in this natural population.
Human acid sphingomyelinase
Authors: Lansmann Stephanie , Schuette Christina G. , Bartelsen Oliver , Hoernschemeyer Joerg , Linke Thomas , Weisgerber Judith , Sandhoff Konrad
Published: December 2004

Human acid sphingomyelinase (haSMase, EC 3.1.4.12) catalyzes the lysosomal degradation of sphingomyelin to ceramide and phosphorylcholine. An inherited haSMase deficiency leads to Niemann–Pick disease, a severe sphingolipid storage disorder.

The enzyme was purified and cloned over 10 years ago. Since then, only a few structural properties of haSMase have been elucidated. For understanding of its complex functions including its role in certain signaling and apoptosis events, complete structural information about the enzyme is necessary. Here, the identification of the disulfide bond pattern of haSMase is reported for the first time. Functional recombinant enzyme expressed in SF21 cells using the baculovirus expression system was purified and digested by trypsin. MALDI‐MS analysis of the resulting peptides revealed the four disulfide bonds Cys120‐Cys131, Cys385‐Cys431, Cys584‐Cys588 and Cys594‐Cys607. Two additional disulfide bonds (Cys221‐Cys226 and Cys227‐Cys250) which were not directly accessible by tryptic cleavage, were identified by a combination of a method of partial reduction and MALDI‐PSD analysis. In the sphingolipid activator protein (SAP)‐homologous N‐terminal domain of haSMase, one disulfide bond was assigned as Cys120‐Cys131. The existence of two additional disulfide bridges in this region was proved, as was expected for the known disulfide bond pattern of SAP‐type domains. These results support the hypothesis that haSMase possesses an intramolecular SAP‐type activator domain as predicted by sequence comparison [Ponting, C.P. (1994) Protein Sci., 3, 359–361].

An additional analysis of haSMase isolated from human placenta shows that the recombinant and the native human protein possess an identical disulfide structure.
Outer sphere mutagenesis of Lactobacillus plantarum manganese catalase disrupts the cluster core
Authors: Whittaker Mei M. , Barynin Vladimir V. , Igarashi Takao , Whittaker James W.
Published: December 2004

X‐ray crystallography of the nonheme manganese catalase from Lactobacillus plantarum (LPC) [Barynin, V.V., Whittaker, M.M., Antonyuk, S.V., Lamzin, V.S., Harrison, P.M., Artymiuk, P.J. & Whittaker, J.W. (2001) Structure9, 725–738] has revealed the structure of the dimanganese redox cluster together with its protein environment. The oxidized [Mn(III)Mn(III)] cluster is bridged by two solvent molecules (oxo and hydroxo, respectively) together with a µ1,3 bridging glutamate carboxylate and is embedded in a web of hydrogen bonds involving an outer sphere tyrosine residue (Tyr42). A novel homologous expression system has been developed for production of active recombinant LPC and Tyr42 has been replaced by phenylalanine using site‐directed mutagenesis. Spectroscopic and structural studies indicate that disruption of the hydrogen‐bonded web significantly perturbs the active site in Y42F LPC, breaking one of the solvent bridges and generating an ‘open’ form of the dimanganese cluster. Two of the metal ligands adopt alternate conformations in the crystal structure, both conformers having a broken solvent bridge in the dimanganese core. The oxidized Y42F LPC exhibits strong optical absorption characteristic of high spin Mn(III) in low symmetry and lower coordination number. MCD and EPR measurements provide complementary information defining a ferromagnetically coupled electronic ground state for a cluster containing a single solvent bridge, in contrast to the diamagnetic ground state found for the native cluster containing a pair of solvent bridges. Y42F LPC has less than 5% of the catalase activity and much higher Km for H2O2 (≈1.4 m) at neutral pH than WT LPC, although the activity is slightly restored at high pH where the cluster is converted to a diamagnetic form. These studies provide new insight into the contribution of the outer sphere tyrosine to the stability of the dimanganese cluster and the role of the solvent bridges in catalysis by dimanganese catalases.
Determination of the redox potentials and electron transfer properties of the FAD‐ and FMN‐binding domains of the human oxidoreductase NR1
Authors: Finn Robert D. , Basran Jaswir , Roitel Olivier , Wolf C. Roland , Munro Andrew W. , Paine Mark J. I. , Scrutton Nigel S.
Published: December 2004

Human novel reductase 1 (NR1) is an NADPH dependent diflavin oxidoreductase related to cytochrome P450 reductase (CPR). The FAD/NADPH‐ and FMN‐binding domains of NR1 have been expressed and purified and their redox properties studied by stopped‐flow and steady‐state kinetic methods, and by potentiometry. The midpoint reduction potentials of the oxidized/semiquinone (−315 ± 5 mV) and semiquinone/dihydroquinone (−365 ± 15 mV) couples of the FAD/NADPH domain are similar to those for the FAD/NADPH domain of human CPR, but the rate of hydride transfer from NADPH to the FAD/NADPH domain of NR1 is ≈ 200‐fold slower. Hydride transfer is rate‐limiting in steady‐state reactions of the FAD/NADPH domain with artificial redox acceptors. Stopped‐flow studies indicate that hydride transfer from the FAD/NADPH domain of NR1 to NADP+ is faster than hydride transfer in the physiological direction (NADPH to FAD), consistent with the measured reduction potentials of the FAD couples [midpoint potential for FAD redox couples is −340 mV, cf−320 mV for NAD(P)H]. The midpoint reduction potentials for the flavin couples in the FMN domain are −146 ± 5 mV (oxidized/semiquinone) and −305 ± 5 mV (semiquinone/dihydroquinone). The FMN oxidized/semiquinone couple indicates stabilization of the FMN semiquinone, consistent with (a) a need to transfer electrons from the FAD/NADPH domain to the FMN domain, and (b) the thermodynamic properties of the FMN domain in CPR and nitric oxide synthase. Despite overall structural resemblance of NR1 and CPR, our studies reveal thermodynamic similarities but major kinetic differences in the electron transfer reactions catalysed by the flavin‐binding domains.