bluuebunny/crossref_metadata_2025 huggingface dataset:
A Method for Constructing the Characteristics of English Majors in Vocational Colleges Based on Data Fusion of Educational Reform
Authors: Chao Li Shi
Published: September 2024

This paper proposes a method for the construction of English major group characteristics in vocational colleges based on the integration of educational reform data. This method accurately extracts educational reform data from the official website of vocational colleges by using ETL tools in the database. Word segmentation and stop word processing are performed on these data to achieve data cleaning and integration. The processed teaching reform data of vocational colleges are integrated to form a comprehensive dataset. Based on this integrated dataset, the Analytic Hierarchy Process is used to accurately interpolate the missing values present. After completing the interpolation of missing values, advanced methods based on two-layer robust cross-mapping are further applied to deeply fuse the teaching reform data of vocational colleges, thereby generating high-quality fusion data of vocational college teaching reform. On this basis, a strategy for constructing the characteristics of English major groups is proposed, and the teaching effectiveness of the constructed English major groups is evaluated through a fuzzy comprehensive evaluation model based on the bat algorithm. The experimental results show that this method has strong effects on data integration, missing value interpolation, and fusion in vocational college education reform. At the same time, it can effectively build an English professional group for vocational college teachers, and the teaching effect of this English professional group is good.
Fractionary charged particles confronting lepton flavor violation and the muon’s anomalous magnetic moment
Authors: Barreto Elmer Ramirez , Dias Alex G.
Published: September 2024

In light of the recent result published by the Fermilab Muon [Formula: see text] experiment, we investigate a simple model that includes particles of fractional electric charges: a color-singlet fermion and a scalar with charges [Formula: see text] and [Formula: see text], respectively. The impact of these particles on the muon anomalous magnetic moment is examined, particularly the restrictions on their Yukawa couplings with the light leptons. Given that lepton flavor violation processes impose stringent constraints on certain scenarios beyond the Standard Model, we evaluate the one-loop contribution of the new particles to [Formula: see text] in order to identify regions in the parameter space consistent with the Fermilab results and compatible with the current and projected limits on the branching ratio [Formula: see text]. Taking into account the current lower bound for the masses of fractionary charged particles, which is around 634[Formula: see text]GeV, we show that the mass of the scalar particle with fractional charge must exceed 1[Formula: see text]TeV. In particular, we present some estimatives for double production of the color-singlet fermion at the 14[Formula: see text]TeV LHC. Finally, we also study the validity of our model in light of the QCD lattice results on the muon [Formula: see text].
Investigation of a new similarity solution for the (2+1)-dimensional Schwarzian Korteweg–de Vries equation
Authors: Ali Mohamed R. , Mubaraki Ali , Sadat R. , Ma Wen-Xiu
Published: September 2024

We study the (2+1)-dimensional Schwarzian Korteweg–de Vries equation (SKdV). The explored solutions describe new Lump soliton colliding with visible soliton, an interaction between multi-soliton waves with one soliton, multi peaks of waves moving in a curved path, two hyperbolic waves moving together without interaction and some of periodic waves. We examine the commutative product between multi unknown Lie infinitesimals for the (2+1)-dimensional (SKdV) equation, and this study result in some new Lie vectors. The commutative product generates a system of nonlinear ODEs which had been solved manually. Through two stages of Lie symmetry reduction, SKdV equation is reduced to non-solvable nonlinear ODEs using various combinations of optimal Lie vectors. Using the Riccati–Bernoulli sub-ODE and Integration methods, we investigate new analytical solutions for these ODEs. Back substituting for the original variables generates new solutions for SKdV. Some selected solutions are illustrated through three-dimensional plots.
Is It Hard to Generate Holistic Commit Message?
Authors: Wang Guoqing , Sun Zeyu , Dong Jinhao , Zhang Yuxia , Zhu Mingxuan , Liang Qingyuan , Hao Dan
Published: September 2024

Commit messages are important for developers to understand the content and the reason for code changes. However, poor and even empty commit messages widely exist. To improve the quality of commit messages and development efficiency, many commit message generation methods have been proposed. Nevertheless, previous methods mainly focus on a brief generation problem, where both the input code change and the output commit messages are restricted to short. This may initiate a debate on the performance of these methods in practice. In this article, we attempt to remove the restrictions and move the needle forward to a holistic commit message generation problem. In particular, we conduct experiments to evaluate the performance of existing commit message generation methods in holistic commit message generation. In the experiments, we choose seven state-of-the-art commit generation methods and focus on two important scenarios in commit message generation (i.e., the within-project scenario and the cross-project scenario). To conduct our experiments, we publish a holistic commit message dataset HORDA with test data manually labeled. In our evaluations, we find that in generating holistic commit messages, the IR-based method has a better performance than non-pre-trained generation-based methods in the within-project scenario, contradicting previous research findings. Further, while the pre-trained generation-based methods are better than non-pre-trained generation-based methods, they are still constrained by the limitations of generation models.
Mechanical Memories in Solids, From Disorder to Design
Authors: Paulsen Joseph D. , Keim Nathan C.
Published: September 2024

Solids are rigid, which means that when left undisturbed, their structures are nearly static. It follows that these structures depend on history—but it is surprising that they hold readable memories of past events. Here, we review the research that has recently flourished around mechanical memory formation, beginning with amorphous solids’ various memories of deformation and mesoscopic models based on particle rearrangements. We describe how these concepts apply to a much wider range of solids and glassy matter, and how they are a bridge to memory and physical computing in mechanical metamaterials. An understanding of memory in all these solids can potentially be the basis for designing or training functionality into materials. Just as important is memory's value for understanding matter whenever it is complex, frustrated, and out of equilibrium.
Transcriptional Profiling of the Rabbit Liver Infected With Eimeria stiedae Reveals Dynamic Host Cell Responses During the Induction and Resolution of Cholangitis
Authors: Deng Miner , Hou Tianyi , Wei Yanting , Zeng Wanting , Guo Yaqiong , Li Na , Xiao Lihua , Feng Yaoyu
Published: September 2024

Eimeria stiedae is one of the few eukaryotic pathogens that exclusively infect the liver and serves as a good model to study the host–pathogen interactions in this vital organ. In this study, we show that rabbits infected with E. stiedae develop severe but self‐healing cholangitis. RNA‐seq analysis of the liver gene expression landscapes over the long course of E. stiedae infection identified 912 differentially expressed genes (DEGs) in the prepatent period (794 up‐ and 118 downregulated genes), 2889 DEGs in the early oocyst shedding period (1870 up‐ and 1019 downregulated genes), 2859 DEGs in the peak oocyst shedding period (1923 up‐ and 936 downregulated genes), and 327 DEGs in the recovery period (164 up‐ and 163 downregulated genes). Combined with pathological observations, we identified dynamic changes in host–parasite interactions involving multiple pathways. They showed that E. stiedae infection induced full‐blown inflammatory, Th1 and Th17 immune responses at all time points. This was associated with the strong innate immune responses during the prepatent period, including increased Toll‐like and NOD‐like receptor signaling. Despite mounting several damage control and repair responses, such as PI3K‐Akt signaling, Ras signaling, and extracellular matrix‐receptor interactions, the liver underwent severe metabolic dysfunction, oxidative damage, and coagulopathy after patency and at peak infection, possibly as a result of suppressed peroxisome activities and downregulated PPAR signaling. These responses largely disappeared during late infection, suggesting that the liver self‐heals after severe cholangitis. These data provide new insights into host–pathogen interactions during Eimeria infection and improve our understanding of the pathogenesis of parasitic cholangitis.
High‐Pressure Torsion: A Simulation Approach for Additive Friction Stir Deposition Processes
Authors: Pavlenko Dmytro V. , Tkach Daria V. , Vyshnepolskyi Yevgen V. , Schetinina Myroslava O. , Tarasov Oleksandr F.
Published: September 2024

The technology of manufacturing aluminum alloy workpieces using additive friction stir deposition (AFS‐D) has been thoroughly investigated. The ambiguous influence of deformation processing modes on the material density was found. Examination of the microstructure in the central zone of the specimens reveals the absence of microdefects typically associated with workpieces obtained through casting or powder metallurgy methods. It has been observed that the distribution of microhardness is significantly affected by the direction of specimen construction, with approximately a 20% difference in values between the periphery and the central part of the specimen. Specimens produced using the AFS‐D method exhibit a homogeneous microstructure characteristic of deformable aluminum alloys. Notably, a uniform distribution of intermetallides on the specimen surface has been identified. This outcome is likely a result of the alloy undergoing recrystallization during the severe plastic deformation process, leading to the formation of an ultradisperse structure. It is important to emphasize that the selection of technological parameters for AFS‐D should consider not only the magnitude of pressure and deformation but also the deformation speed.
Bioaccessibility of Vitamins and Minerals in Processed Tubers and Leaves of Manihot esculenta Crantz Varieties
Authors: Ojiambo Ogombe C. , Mildred Nawiri P. , Nyambaka Hudson
Published: September 2024

Manihot esculenta Crantz (cassava) is an important food crop in developing nations, with its tubers and leaves being a source of ascorbic acid, thiamin, riboflavin, and niacin (vitamins) and calcium, iron, potassium, and zinc (minerals). Malnutrition prevalence in some Kenyan Counties that relied on cassava‐based diets has partly been attributed to processing methods and/or nutrient bioaccessibility. The study area Kilifi County grows Kibandameno and Tajirika cassava varieties and is on record for high prevalence of undernutrition. The levels of vitamins and minerals, and their bioaccessibility in raw, boiled, and deep‐fried tubers, and pounded then boiled leaves of Kibandameno and Tajirika cassava varieties were studied. Digestion was done using static gastrointestinal digestion prior to the determination of vitamins (by HPLC) and minerals (by AAS and AES). Bioaccessibility of both vitamins and minerals was significantly higher (P < 0.001) in boiled followed by deep‐fried and lowest in raw tubers. Bioaccessibility ranged between 27% (Fe)–85% (vitamin C) in boiled, 20% (Fe)–79% (vitamin B1) in deep‐fried, and 15% (Fe)–(72% (K) in raw tubers. Bioaccessibility in processed leaves was significantly higher (P < 0.001) than in raw. This ranged between 11% (Fe)–81% (vitamin B1) in processed and between 8% (Fe)–67% (K) in raw leaves. Processing therefore significantly reduced levels of ascorbic acid, thiamin, riboflavin, niacin, calcium, iron, potassium, and zinc in raw tubers and leaves of Kibandameno and Tajirika Manihot esculenta Crantz varieties. Their bioaccessibility however significantly increased, being higher in tubers than in leaves.
Supplementary Figure S10 from Arginine Methylation of DDX3 by PRMT1 Mediates Mitochondrial Homeostasis to Promote Breast Cancer Metastasis
Authors: Hsu Wen-Jing , Chiang Ming-Chen , Chao Yi-Chun , Chang Yu-Chu , Hsu Ming-Chien , Chung Chu-Hung , Tsai I-Lin , Chu Cheng-Ying , Wu Han-Chung , Yang Ching-Chieh , Lee Chi-Ching , Lin Cheng-Wei
Published: September 2024

Stress induces DDX3 levels and DDX3-mediated mitophagy.
Supplementary Figure S1 from Arginine Methylation of DDX3 by PRMT1 Mediates Mitochondrial Homeostasis to Promote Breast Cancer Metastasis
Authors: Hsu Wen-Jing , Chiang Ming-Chen , Chao Yi-Chun , Chang Yu-Chu , Hsu Ming-Chien , Chung Chu-Hung , Tsai I-Lin , Chu Cheng-Ying , Wu Han-Chung , Yang Ching-Chieh , Lee Chi-Ching , Lin Cheng-Wei
Published: September 2024

Transcriptomic analysis showing that primary and metastatic 4T1 cells participate in distinct pathways.
Figure S4 from VPAC2 Receptor Signaling Promotes Growth and Immunosuppression in Pancreatic Cancer
Authors: Passang Tenzin , Wang Shuhua , Zhang Hanwen , Zeng Fanyuan , Hsu Po-Chih , Wang Wenxi , Li Jian-Ming , Liu Yuan , Ravindranathan Sruthi , Lesinski Gregory B. , Waller Edmund K.
Published: September 2024

Supplementary Figure
Supplementary Data from Ionizable STING-Activating Nanoadjuvants Enhance Tumor Immunogenicity and Potentiate Immunotherapy Efficacy in Solid Tumors
Authors: Xian Shiyun , Chen Xiaona , Ren Sihang , Chen Xiaolong , Wang Hangxiang
Published: September 2024

Supplementary Methods, Supplementary Figures S1–S50, and Supplementary Tables S1–S3.
Figure S7 from Scribble Deficiency Promotes Pancreatic Ductal Adenocarcinoma Development and Metastasis
Authors: Bermejo-Rodriguez Camino , Araos Henríquez Joaquín , Caligiuri Giuseppina , Pinto Teles Sara , Park Youngkyu , Evans Anthony , Barrera Lawrence N. , Neesse Albrecht , Grützmann Robert , Aust Daniela , Rümmele Petra , Knösel Thomas , Narita Masako , Narita Masashi , Campbell Fiona , Öhlund Daniel , Pilarsky Christian , Dow Lukas E. , Humbert Patrick O. , Biffi Giulia , Tuveson David A. , Perez-Mancera Pedro A.
Published: September 2024

Supplementary Figure 7
Figure S6 from Scribble Deficiency Promotes Pancreatic Ductal Adenocarcinoma Development and Metastasis
Authors: Bermejo-Rodriguez Camino , Araos Henríquez Joaquín , Caligiuri Giuseppina , Pinto Teles Sara , Park Youngkyu , Evans Anthony , Barrera Lawrence N. , Neesse Albrecht , Grützmann Robert , Aust Daniela , Rümmele Petra , Knösel Thomas , Narita Masako , Narita Masashi , Campbell Fiona , Öhlund Daniel , Pilarsky Christian , Dow Lukas E. , Humbert Patrick O. , Biffi Giulia , Tuveson David A. , Perez-Mancera Pedro A.
Published: September 2024

Supplementary Figure 6
Figure S2 from IDH1 Inhibition Potentiates Chemotherapy Efficacy in Pancreatic Cancer
Authors: Zarei Mehrdad , Hajihassani Omid , Hue Jonathan J. , Loftus Alexander W. , Graor Hallie J. , Nakazzi Faith , Naji Parnian , Boutros Christina S. , Uppin Vinayak , Vaziri-Gohar Ali , Shalaby Akram S. , Asara John M. , Rothermel Luke D. , Brody Jonathan R. , Winter Jordan M.
Published: September 2024

Figure S2
Supplementary Tables from Asparagine Dependency Is a Targetable Metabolic Vulnerability in TP53-Altered Castration-Resistant Prostate Cancer
Authors: Yoo Young A. , Quan Songhua , Yang William , Guo Qianyu , Rodríguez Yara , Chalmers Zachary R. , Dufficy Mary F. , Lackie Barbara , Sagar Vinay , Unno Kenji , Truica Mihai I. , Chandel Navdeep S. , Abdulkadir Sarki A.
Published: September 2024

Supplementary Tables
Supplementary Figures from Asparagine Dependency Is a Targetable Metabolic Vulnerability in TP53-Altered Castration-Resistant Prostate Cancer
Authors: Yoo Young A. , Quan Songhua , Yang William , Guo Qianyu , Rodríguez Yara , Chalmers Zachary R. , Dufficy Mary F. , Lackie Barbara , Sagar Vinay , Unno Kenji , Truica Mihai I. , Chandel Navdeep S. , Abdulkadir Sarki A.
Published: September 2024

Supplementary Text and Figures
Supplemental Materials from Computational and Functional Analyses of HER2 Mutations Reveal Allosteric Activation Mechanisms and Altered Pharmacologic Effects
Authors: Ishiyama Noboru , O'Connor Matthew , Salomatov Andrei , Romashko Darlene , Thakur Shalabh , Mentes Ahmet , Hopkins Julia F. , Frampton Garrett M. , Albacker Lee A. , Kohlmann Anna , Roberts Christopher , Buck Elizabeth
Published: September 2024

Supplemental Materials from Computational and Functional Analyses of HER2 Mutations Reveal Allosteric Activation Mechanisms and Altered Pharmacologic Effects
Supplementary Table 2 from The macrophage-associated lncRNA MALR facilitates ILF3 liquid-liquid phase separation to promote HIF1α signaling in esophageal cancer
Authors: Liu Jia , Liu Ze-Xian , Li Jia-Jun , Zeng Zhao-Lei , Wang Jin-Hong , Luo Xiao-Jing , Wong Chau-Wei , Zheng Jia-Bo , Pu Heng-Ying , Mo Hai-yu , Sheng Hui , Wu Qi-Nian , Li Hao , Wan Gang , Li Bo , Wang De-shen , Xu Rui-Hua , Ju Huai-Qiang
Published: September 2024

Supplementary Table 2
Supplementary Data from Active remodeling of capillary endothelium via cancer cell-derived MMP9 promotes metastatic brain colonization
Authors: Karreman Matthia A. , Bauer Alexander T. , Solecki Gergely , Berghoff Anna S. , Mayer Chanté D. , Frey Katharina , Hebach Nils , Feinauer Manuel J. , Schieber Nicole L. , Tehranian Cedric , Mercier Luc , Singhal Mahak , Venkataramani Varun , Schubert Marc C. , Hinze Daniel , Hölzel Michael , Helfrich Iris , Schadendorf Dirk , Schneider Stefan W. , Westphal Dana , Augustin Hellmut G. , Goetz Jacky G. , Schwab Yannick , Wick Wolfgang , Winkler Frank
Published: September 2024

Supplementary Movie 1
Supplementary Data from DNA methylation landscapes of prostate cancer brain metastasis are shaped by early driver genetic alterations
Authors: Gallon John , Rodriguez-Calero Antonio , Benjak Andrej , Akhoundova Dilara , Maletti Sina , Amstutz Ursula , Hewer Ekkehard , Genitsch Vera , Fleischmann Achim , Rushing Elisabeth J. , Grobholz Rainer , Fischer Ingeborg , Jochum Wolfram , Cathomas Gieri , Osunkoya Adeboye O. , Bubendorf Lukas , Moch Holger , Thalmann George , Feng Felix Y. , Gillessen Silke , Ng Charlotte K.Y. , Rubin Mark A. , Piscuoglio Salvatore
Published: September 2024

Supplementary Figures
Table S6 from Single-cell discovery and multi-omic characterization of therapeutic targets in multiple myeloma
Authors: Yao Lijun , Wang Julia T. , Jayasinghe Reyka G. , O'Neal Julie , Tsai Chia-Feng , Rettig Michael P. , Song Yizhe , Liu Ruiyang , Zhao Yanyan , Ibrahim Omar M. , Fiala Mark A. , Fortier Julie M. , Chen Siqi , Gehrs Leah , Martins Rodrigues Fernanda , Wendl Michael C. , Kohnen Danny , Shinkle Andrew , Cao Song , Foltz Steven M. , Zhou Daniel Cui , Storrs Erik , Wyczalkowski Matthew A. , Mani Smrithi , Goldsmith Scott R. , Zhu Ying , Hamilton Mark , Liu Tao , Chen Feng , Vij Ravi , Ding Li , DiPersio John F.
Published: September 2024

Pearson R correlation values between bulk RNA expression and scRNA expression in PCs for target genes.
Table S3 from Single-cell discovery and multi-omic characterization of therapeutic targets in multiple myeloma
Authors: Yao Lijun , Wang Julia T. , Jayasinghe Reyka G. , O'Neal Julie , Tsai Chia-Feng , Rettig Michael P. , Song Yizhe , Liu Ruiyang , Zhao Yanyan , Ibrahim Omar M. , Fiala Mark A. , Fortier Julie M. , Chen Siqi , Gehrs Leah , Martins Rodrigues Fernanda , Wendl Michael C. , Kohnen Danny , Shinkle Andrew , Cao Song , Foltz Steven M. , Zhou Daniel Cui , Storrs Erik , Wyczalkowski Matthew A. , Mani Smrithi , Goldsmith Scott R. , Zhu Ying , Hamilton Mark , Liu Tao , Chen Feng , Vij Ravi , Ding Li , DiPersio John F.
Published: September 2024

Batch specific co-expression analysis.
Supplementary Data from Neutrophil conversion to a tumor-killing phenotype underpins effective microbial therapy
Authors: Yam Andrew O. , Bailey Jacqueline , Lin Francis , Jakovija Arnolda , Youlten Scott E. , Counoupas Claudio , Gunzer Matthias , Bald Tobias , Woodruff Trent M. , Triccas James A. , Goldstein Leonard D. , Gallego-Ortega David , Grey Shane T. , Chtanova Tatyana
Published: September 2024

SUPPLEMENTARY FIGURES 1-10; SUPPLEMENTARY TABLE and VIDEO LEGENDS; EXTENDED MATERIALS AND METHODS
Supplementary Table S1 from G-quadruplex structures are key modulators of somatic structural variants in cancers
Authors: Zhang Rongxin , Shu Huiling , Wang Yuqi , Tao Tiantong , Tu Jing , Wang Cheng , Mergny Jean-Louis , Sun Xiao
Published: September 2024

in vivo G-quadruplex data used in this study
Supplementary file 3: Supplementary Tables. from circFNDC3B accelerates vasculature formation and metastasis in oral squamous cell carcinoma
Authors: Li Xiang , Wang Chenxing , Zhang Hang , Li Yangjie , Hou Deqiang , Liu Dingshan , Xu Rongyao , Cheng Jie , Liu Lai-Kui , Fu Yu , Ye Jinhai , Jiang Hongbing
Published: September 2024

Supplementary Tables.
Supplementary file 1: Supplementary Materials and Methods. from circFNDC3B accelerates vasculature formation and metastasis in oral squamous cell carcinoma
Authors: Li Xiang , Wang Chenxing , Zhang Hang , Li Yangjie , Hou Deqiang , Liu Dingshan , Xu Rongyao , Cheng Jie , Liu Lai-Kui , Fu Yu , Ye Jinhai , Jiang Hongbing
Published: September 2024

Supplementary Materials and Methods.
Supplementary Table S1 from Ablation of p57+ Quiescent Cancer Stem Cells Suppresses Recurrence After Chemotherapy of Intestinal Tumors
Authors: Oka Takeru , Higa Tsunaki , Sugahara Osamu , Koga Daisuke , Nakayama Shogo , Nakayama Keiichi I.
Published: September 2024

Supplementary Table S1
Table S2 from ASS1-mediated reductive carboxylation of cytosolic glutamine confers ferroptosis resistance in cancer cells
Authors: Hu Qiangsheng , Dai Jie , Zhang Zheng , yu Huansha , Zhang Jing , Zhu Xinsheng , Qin Yi , Zhang Lele , Zhang Peng
Published: September 2024

Supplementary Metabolomics raw data
Supplementary Table 1 from ANO1 reprograms cholesterol metabolism and the tumor microenvironment to promote cancer metastasis
Authors: Deng Chun-Miao , Zhang Guo-Geng , Liu Qin-Wen , Xu Jiao-Jiao , Liu Zhi-Chao , Yang Jing , Xu Tao-Yang , Li Zhi-Gang , Zhang Fan , Li Bin
Published: September 2024

Supplementary Table 1 shows primary antibody list
Supplementary Figure 4 from Hypoxia potentiates the inflammatory fibroblast phenotype promoted by pancreatic cancer cell-derived cytokines
Authors: Schwoerer Simon , Cimino Francesco V. , Ros Manon , Tsanov Kaloyan M. , Ng Charles , Lowe Scott W. , Carmona-Fontaine Carlos , Thompson Craig B.
Published: September 2024

Supplementary Figure 4, related to Figures 4 and 6
Supplementary Figure 1 from Hypoxia potentiates the inflammatory fibroblast phenotype promoted by pancreatic cancer cell-derived cytokines
Authors: Schwoerer Simon , Cimino Francesco V. , Ros Manon , Tsanov Kaloyan M. , Ng Charles , Lowe Scott W. , Carmona-Fontaine Carlos , Thompson Craig B.
Published: September 2024

Supplementary Figure 1, related to Figure 1
Supplementary Figures from NAT10 drives cisplatin chemoresistance by enhancing ac4C-associated DNA repair in bladder cancer
Authors: Xie Ruihui , Cheng Liang , Huang Ming , Huang Lin , Chen Ziyue , Zhang Qiang , Li Hong , Lu Junlin , Wang Hongjin , Zhou Qianghua , Huang Jian , Chen Xu , Lin Tianxin
Published: September 2024

Supplementary Figures
Supplementary Data from The m6A reader YTHDF2 promotes bladder cancer progression by suppressing RIG-I-mediated immune response
Authors: Zhang Lei , Li Yuqing , Zhou Lingli , Zhou Houhong , Ye Liefu , Ou Tong , Hong Huaishan , Zheng Shiwen , Zhou Ziyu , Wu Kang , Yan Zeqin , Thiery Jean Paul. , Cui Jun , Wu Song
Published: September 2024

Supplementary Data clean version
Supplementary Data from Extrachromosomal Amplification of Human Papillomavirus Episomes is a Mechanism of Cervical Carcinogenesis
Authors: Rossi Nicole M. , Dai Jieqiong , Xie Yi , Wangsa Darawalee , Heselmeyer-Haddad Kerstin , Lou Hong , Boland Joseph F. , Yeager Meredith , Orozco Roberto , Alvirez Freites Enrique , Mirabello Lisa , Gharzouzi Eduardo , Dean Michael
Published: September 2024

Supplemental tables
Supplementary Data from Comprehensive DNA methylation analysis indicates that pancreatic intraepithelial neoplasia lesions are acinar-derived and epigenetically primed for carcinogenesis
Authors: Lo Emily K. W. , Mears Brian M. , Maurer H. Carlo , Idrizi Adrian , Hansen Kasper D. , Thompson Elizabeth D. , Hruban Ralph H. , Olive Kenneth P. , Feinberg Andrew P.
Published: September 2024

Supplementary figures and captions for supplementary tables
Supplementary Data from BCA101 is a Tumor-Targeted Bifunctional Fusion Antibody that Simultaneously Inhibits EGFR and TGF-β Signalling to Durably Suppress Tumor Growth
Authors: Boreddy Srinivas Reddy , Nair Reshmi , Pandey Prashant Kumar. , Kuriakose Anshu , Marigowda Shivakumar Bhadravathi. , Dey Chaitali , Banerjee Arindam , Kulkarni Hanumant , Sagar Milind , Krishn Shiv Ram , Rao Shruthi , A R Madhukara , Tiwari Vinita , Alke Bhavna , MV Prashantha Kumara , Shri Meena , Dhamne Chaitrali , Patel Sonal , Sharma Pinky , Periyasamy Sankar , Bhatnagar Jaya , Kuriakose Moni Abraham. , Reddy Ram Bhupal , Suresh Amritha , Sreenivas Suma , Govindappa Nagaraja , Moole Praveen Reddy. , Bughani Usha , Tan Seng-Lai , Nair Pradip
Published: September 2024

Supplementary data
Table S4 from Caffeine supplementation and FOXM1 inhibition enhance the antitumor effect of statins in neuroblastoma
Authors: Tran Gia-Buu , Ding Jane , Ye Bingwei , Liu Mengling , Yu Yajie , Zha Yunhong , Dong Zheng , Liu Kebin , Sudarshan Sunil , Ding Han-Fei
Published: September 2024

GO analysis of genes up-regulated in the Simvastatin plus mevalonate group vs. the simvastatin group.
Supplementary Table S2 from Caffeine supplementation and FOXM1 inhibition enhance the antitumor effect of statins in neuroblastoma
Authors: Tran Gia-Buu , Ding Jane , Ye Bingwei , Liu Mengling , Yu Yajie , Zha Yunhong , Dong Zheng , Liu Kebin , Sudarshan Sunil , Ding Han-Fei
Published: September 2024

Simvastatin responsive genes
Figure S4 from Distinct Nrf2 Signaling Thresholds Mediate Lung Tumor Initiation and Progression
Authors: DeBlasi Janine M. , Falzone Aimee , Caldwell Samantha , Prieto-Farigua Nicolas , Prigge Justin R. , Schmidt Edward E. , Chio Iok In Christine , Karreth Florian A. , DeNicola Gina M.
Published: September 2024

Supplementary Fig. S4 shows the H-scores by tumor grade of Nrf2 and Nqo1 immunohistochemical staining in KrasG12D/+; p53fl/fl and KrasG12D/+; p53fl/fl; Keap1R554Q/R554Q mouse models with single copy Nrf2 deletion.
Figure S1 from Distinct Nrf2 Signaling Thresholds Mediate Lung Tumor Initiation and Progression
Authors: DeBlasi Janine M. , Falzone Aimee , Caldwell Samantha , Prieto-Farigua Nicolas , Prigge Justin R. , Schmidt Edward E. , Chio Iok In Christine , Karreth Florian A. , DeNicola Gina M.
Published: September 2024

Supplementary Fig. S1 shows that the CA-Keap1R554Q allele does not exhibit hypomorphism in mouse embryonic fibroblasts.
Supplementary Table from Ubiquitin ligases Siah1a/2 control alveolar macrophage functions to limit carcinogen-induced lung adenocarcinoma
Authors: Scortegagna Marzia , Du Yuanning , Bradley Linda M. , Wang Kun , Molinolo Alfredo , Ruppin Eytan , Murad Rabi , Ronai Ze'ev A.
Published: September 2024

Sup Table 3
Supplementary Figure Legends from Ubiquitin ligases Siah1a/2 control alveolar macrophage functions to limit carcinogen-induced lung adenocarcinoma
Authors: Scortegagna Marzia , Du Yuanning , Bradley Linda M. , Wang Kun , Molinolo Alfredo , Ruppin Eytan , Murad Rabi , Ronai Ze'ev A.
Published: September 2024

Legends to all Supp Figures
Supplementary Fig 5 from Ubiquitin ligases Siah1a/2 control alveolar macrophage functions to limit carcinogen-induced lung adenocarcinoma
Authors: Scortegagna Marzia , Du Yuanning , Bradley Linda M. , Wang Kun , Molinolo Alfredo , Ruppin Eytan , Murad Rabi , Ronai Ze'ev A.
Published: September 2024

Sup Fig 5
Supplementary Fig 1 from Ubiquitin ligases Siah1a/2 control alveolar macrophage functions to limit carcinogen-induced lung adenocarcinoma
Authors: Scortegagna Marzia , Du Yuanning , Bradley Linda M. , Wang Kun , Molinolo Alfredo , Ruppin Eytan , Murad Rabi , Ronai Ze'ev A.
Published: September 2024

Sup Fig 1
Supplementary Data from Proteomic profiling of extracellular matrix components from patient metastases identifies consistently elevated proteins for developing nanobodies that target primary tumors and metastases
Authors: Jailkhani Noor , Clauser Karl R. , Mak Howard H. , Rickelt Steffen , Tian Chenxi , Whittaker Charles A. , Tanabe Kenneth K. , Purdy Stephen R. , Carr Steven A. , Hynes Richard O.
Published: September 2024

Supplementary methods and materials.
Supplementary Data from A germline variant in the BET1L 3’-UTR confers colorectal cancer susceptibility by reducing miRNA binding and m6A modification
Authors: Li Shuwei , Du Mulong , Xu Kaili , Ben Shuai , Zhu Tianru , Guo Mengfan , Xin Junyi , Zhu Lingjun , Gu Dongying , Zhang Zhengdong , Wang Meilin
Published: September 2024

Supplementary Figures 1-13
Supplementary Text from CellMinerCDB: NCATS is a Web-Based Portal Integrating Public Cancer Cell Line Databases for Pharmacogenomic Explorations
Authors: Reinhold William C. , Wilson Kelli , Elloumi Fathi , Bradwell Katie R. , Ceribelli Michele , Varma Sudhir , Wang Yanghsin , Duveau Damien , Menon Nikhil , Trepel Jane , Zhang Xiaohu , Klumpp-Thomas Carleen , Michael Samuel , Shinn Paul , Luna Augustin , Thomas Craig , Pommier Yves
Published: September 2024

Source data
Supplemental Table from PTTG1 reprograms asparagine metabolism to promote hepatocellular carcinoma progression
Authors: Zhou Qi , Li Leijia , Sha Feifei , Lei Yiming , Tian Xuan , Chen Lingjun , Chen Yan , Liu Huiling , Guo Yunwei
Published: September 2024

Supplemental Table
Supplementary Data from Attenuation of sialylation augments antitumor immunity and improves response to immunotherapy in ovarian cancer
Authors: Cao Kankan , Zhang Guodong , Yang Moran , Wang Yiying , He Mengdi , Zhang Chen , Huang Yan , Lu Jiaqi , Liu Haiou
Published: September 2024

Supplementary Tables S1 to S9 for multiple supplementary tables
Supplementary Figure 4 from Retinol saturase mediates retinoid metabolism to impair a ferroptosis defense system in cancer cells
Authors: Bi Guoshu , Liang Jiaqi , Shan Guangyao , Bian Yunyi , Chen Zhencong , Huang Yiwei , Lu Tao , Li Ming , Besskaya Valeria , Zhao Mengnan , Fan Hong , Wang Qun , Gan Boyi , Zhan Cheng
Published: September 2024

RETSAT links retinoid metabolism to ferroptosis.
Table S2 from Ccr2+ monocyte-derived macrophages influence trajectories of acquired therapy resistance in Braf-mutant melanoma
Authors: Kim Dahihm , An Luye , Moon Jiwon , Maymi Viviana I. , McGurk Alexander I. , Rudd Brian D. , Fowell Deborah , White Andrew C.
Published: September 2024

Primers used for quantitative real-time PCR (qRT-PCR)
Figure S5 from Metformin reprograms tryptophan metabolism to stimulate CD8+ T cell function in colorectal cancer
Authors: Huang Xiaowen , Sun Tiantian , Wang Jilin , Hong Xialu , Chen Huimin , Yan Tingting , Zhou Chengbei , Sun Danfeng , Yang Chen , Yu TaChung , Su Wenyu , Du Wan , Xiong Hua
Published: September 2024

Figure S5 presents the results of luciferase assay in 293T cell.
Figure S1 from Metformin reprograms tryptophan metabolism to stimulate CD8+ T cell function in colorectal cancer
Authors: Huang Xiaowen , Sun Tiantian , Wang Jilin , Hong Xialu , Chen Huimin , Yan Tingting , Zhou Chengbei , Sun Danfeng , Yang Chen , Yu TaChung , Su Wenyu , Du Wan , Xiong Hua
Published: September 2024

Figure S1 describes the workflow for scRNA-seq analysis and markers for celltype annotation.
Supplementary File 8 from Proteasome Inhibition Sensitizes Liposarcoma to MDM2 Inhibition with Nutlin-3 by Activating the ATF4/CHOP Stress Response Pathway
Authors: Ludwig Michael P. , Galbraith Matthew D. , Eduthan Neetha Paul. , Hill Amanda A. , Clay Michael R. , Moreno Tellez Cristiam , Wilky Breelyn A. , Elias Anthony , Espinosa Joaquín Maximiliano. , Sullivan Kelly D.
Published: September 2024

Agarose gels.
Supplementary Table S1 from Targeting CD44 variant 5 with an antibody-drug conjugate is an effective therapeutic strategy for intrahepatic cholangiocarcinoma
Authors: Bei Yuncheng , He Jian , Dong Xuhui , Wang Yuxin , Wang Sijie , Guo Wan , Cai Chengjie , Xu Zhiye , Wei Jia , Liu Baorui , Zhang Nan , Shen Pingping
Published: September 2024

gene signature correlated with exons of CD44v
Supplementary Data from PP2Ac Deficiency Enhances Tumor Immunogenicity by Activating STING-Type I Interferon Signaling in Glioblastoma
Authors: Mondal Isha , Das Oishika , Sun Raymond , Gao Jian , Yu Bohyeon , Diaz Aaron , Behnan Jinan , Dubey Abhishek , Meng Zhipeng , Eskandar Emad , Xu Beisi , Lu Rongze Olivia. , Ho Winson S.
Published: September 2024

Supplementary Text
Figs. S1 to S8
Tables S1 to S3
Figure S6 from BRCA1 Insufficiency Induces a Hypersialylated Acidic Tumor Microenvironment that Promotes Metastasis and Immunotherapy Resistance
Authors: Shu Xiaodong , Li Jianjie , Chan Un In , Su Sek Man , Shi Changxiang , Zhang Xin , An Tingting , Xu Jun , Mo Lihua , Liu Jianlin , Wang Yuqing , Li Xiaoling , Deng Min , Lei Josh Haipeng , Wang Chunfei , Tian Hao , Sun Heng , Shim Joong Sup , Zhang Xuanjun , Dai Yunlu , Yao Zhicheng , Kuang Xiaying , Lin Ying , Deng Chu-Xia , Xu Xiaoling
Published: September 2024

Original picture
Supplementary Material from Elevated Mast Cell Abundance is Associated with Enrichment of CCR2+ Cytotoxic T cells and Favorable Prognosis in Lung Adenocarcinoma
Authors: Fan Fanfan , Gao Jian , Zhao Yue , Wang Jun , Meng Lu , Ma Jiaqiang , Li Teng , Han Han , Lai Jinglei , Gao Zhendong , Li Xiongfei , Guo Ran , Cao Zhiwei , Zhang Yang , Zhang Xiaoming , Chen Haiquan
Published: September 2024

Supplementary Material
Figure S8 from Oncogenic Transformation Drives DNA Methylation Loss and Transcriptional Activation of Transposable Element Loci
Authors: Kanholm Tomas , Rentia Uzma , Hadley Melissa , Karlow Jennifer A. , Cox Olivia L. , Diab Noor , Bendall Matthew L. , Dawson Tyson , McDonald James I. , Xie Wenbing , Crandall Keith A. , Burns Kathleen H. , Baylin Stephen B. , Easwaran Hariharan , Chiappinelli Katherine B.
Published: September 2024

Supplemental Figure 8
Figure S5 from Oncogenic Transformation Drives DNA Methylation Loss and Transcriptional Activation of Transposable Element Loci
Authors: Kanholm Tomas , Rentia Uzma , Hadley Melissa , Karlow Jennifer A. , Cox Olivia L. , Diab Noor , Bendall Matthew L. , Dawson Tyson , McDonald James I. , Xie Wenbing , Crandall Keith A. , Burns Kathleen H. , Baylin Stephen B. , Easwaran Hariharan , Chiappinelli Katherine B.
Published: September 2024

Supplemental Figure 5
Table S5 from Breast cancer mutations HER2 V777L and PIK3CA H1047R activate the p21-CDK4/6 –Cyclin D1 axis driving tumorigenesis and drug resistance.
Authors: Cheng Xiaoqing , Sun Yirui , Highkin Maureen , Vemalapally Nagalaxmi , Jin Xiaohua , Zhou Brandon , Prior Julie L. , Tipton Ashley R. , Li Shunqiang , Iliuk Anton , Achilefu Samuel , Hagemann Ian S. , Edwards John R. , Bose Ron
Published: September 2024

Phosphoproteins in Heatmap
Supplementary Table S9 from The EstroGene database reveals diverse temporal, context-dependent, and bidirectional estrogen receptor regulomes in breast cancer
Authors: Li Zheqi , Li Tianqin , Yates Megan E. , Wu Yang , Ferber Amanda , Chen Lyuqin , Brown Daniel D. , Carroll Jason S. , Sikora Matthew J. , Tseng George C. , Oesterreich Steffi , Lee Adrian V.
Published: September 2024

Metadata of 60 ER ChIP-seq samples used for gene annotation analysis
Supplementary Table S3 from The EstroGene database reveals diverse temporal, context-dependent, and bidirectional estrogen receptor regulomes in breast cancer
Authors: Li Zheqi , Li Tianqin , Yates Megan E. , Wu Yang , Ferber Amanda , Chen Lyuqin , Brown Daniel D. , Carroll Jason S. , Sikora Matthew J. , Tseng George C. , Oesterreich Steffi , Lee Adrian V.
Published: September 2024

Metadata of four RNA-seq experiments for inter-data set concordance analysis
Supplementary Table S11 from The EstroGene database reveals diverse temporal, context-dependent, and bidirectional estrogen receptor regulomes in breast cancer
Authors: Li Zheqi , Li Tianqin , Yates Megan E. , Wu Yang , Ferber Amanda , Chen Lyuqin , Brown Daniel D. , Carroll Jason S. , Sikora Matthew J. , Tseng George C. , Oesterreich Steffi , Lee Adrian V.
Published: September 2024

LISA regulator predictions of all signatures
Supplementary Data 1. from The genomic and epigenomic landscape of double-negative metastatic prostate cancer
Authors: Lundberg Arian , Zhang Meng , Aggarwal Rahul , Li Haolong , Zhang Li , Foye Adam , Sjöström Martin , Chou Jonathan , Chang Kevin , Moreno-Rodriguez Thaidy , Shrestha Raunak , Baskin Avi , Zhu Xiaolin , Weinstein Alana S. , Younger Noah , Alumkal Joshi J. , Beer Tomasz M. , Chi Kim N. , Evans Christopher P. , Gleave Martin , Lara Primo N. , Reiter Rob E. , Rettig Matthew B. , Witte Owen N. , Wyatt Alexander W. , Feng Felix Y. , Small Eric J. , Quigley David A.
Published: September 2024

List of Differentially expressed genes in the subtypes of mCRPC in comparison with AR+/NE- tumors
Supplementary Figure 5 from PTEN loss confers resistance to anti-PD-1 therapy in non-small cell lung cancer by increasing tumor infiltration of regulatory T cells
Authors: Exposito Francisco , Redrado Miriam , Houry Maeva , Hastings Katherine , Molero-Abraham Magdalena , Lozano Teresa , Solórzano José Luis. , Sanz-Ortega Julian , Adradas Vera , Amat Ramon , Redin Esther , Leon Sergio , Legarra Naroa , Garcia Javier , Serrano Diego , Valencia Karmele , Robles-Oteiza Camila , Foggetti Giorgia , Otegui Nerea , Felip Enriqueta , Lasarte Juan J. , Paz-Ares Luis , Zugazagoitia Jon , Politi Katerina , Montuenga Luis , Calvo Alfonso
Published: September 2024

Supplementary Figure 5
Supplementary Table 1 from Targeting KDM2A Enhances T Cell Infiltration in NSD1-Deficient Head and Neck Squamous Cell Carcinoma
Authors: Chen Chen , Shin June Ho. , Fang Zhuoqing , Brennan Kevin , Horowitz Nina B. , Pfaff Kathleen L. , Welsh Emma L. , Rodig Scott J. , Gevaert Olivier , Gozani Or , Uppaluri Ravindra , Sunwoo John B.
Published: September 2024

Antibodies used
Table S4 from CD36 drives metastasis and relapse in acute myeloid leukemia
Authors: Farge Thomas , Nakhle Jean , Lagarde Damien , Cognet Guillaume , Polley Nathaniel , Castellano Remy , Nicolau Marie-Laure , Bosc Claudie , Sabatier Marie , Sahal Ambrine , Saland Estelle , Jeanson Yannick , Guiraud Nathan , Boet Emeline , Bergoglio Camille , Gotanègre Mathilde , Mouchel Pierre-Luc , Stuani Lucille , Larrue Clement , Sallese Marie , De Mas Véronique , Moro Cédric , Dray Cedric , Collette Yves , Raymond-Letron Isabelle , Ader Isabelle , Recher Christian , Sarry Jean-Emmanuel , Cabon Florence , Vergez Francois , Carriere Audrey
Published: September 2024

Multivariate analysis of the TUH cohort
Table S3 from CD36 drives metastasis and relapse in acute myeloid leukemia
Authors: Farge Thomas , Nakhle Jean , Lagarde Damien , Cognet Guillaume , Polley Nathaniel , Castellano Remy , Nicolau Marie-Laure , Bosc Claudie , Sabatier Marie , Sahal Ambrine , Saland Estelle , Jeanson Yannick , Guiraud Nathan , Boet Emeline , Bergoglio Camille , Gotanègre Mathilde , Mouchel Pierre-Luc , Stuani Lucille , Larrue Clement , Sallese Marie , De Mas Véronique , Moro Cédric , Dray Cedric , Collette Yves , Raymond-Letron Isabelle , Ader Isabelle , Recher Christian , Sarry Jean-Emmanuel , Cabon Florence , Vergez Francois , Carriere Audrey
Published: September 2024

Single cell analysis
Supplementary Data from CD36 drives metastasis and relapse in acute myeloid leukemia
Authors: Farge Thomas , Nakhle Jean , Lagarde Damien , Cognet Guillaume , Polley Nathaniel , Castellano Remy , Nicolau Marie-Laure , Bosc Claudie , Sabatier Marie , Sahal Ambrine , Saland Estelle , Jeanson Yannick , Guiraud Nathan , Boet Emeline , Bergoglio Camille , Gotanègre Mathilde , Mouchel Pierre-Luc , Stuani Lucille , Larrue Clement , Sallese Marie , De Mas Véronique , Moro Cédric , Dray Cedric , Collette Yves , Raymond-Letron Isabelle , Ader Isabelle , Recher Christian , Sarry Jean-Emmanuel , Cabon Florence , Vergez Francois , Carriere Audrey
Published: September 2024

Figure S3
Supplementary Video 4 from Targeting CaMKK2 inhibits actin cytoskeletal assembly to suppress cancer metastasis
Authors: Mukherjee Debarati , Previs Rebecca A. , Haines Corinne , Al Abo Muthana , Juras Patrick K. , Strickland Kyle C. , Chakraborty Binita , Artham Sandeep , Whitaker Regina S. , Hebert Katherine , Fontenot Jake , Patierno Steven R. , Freedman Jennifer A. , Lau Frank H. , Burow Matthew E. , Chang Ching-Yi , McDonnell Donald P.
Published: September 2024

Supplementary Video 4
Supplementary Tables S3-5 from Activation of the cGAS/STING axis in genome-damaged hematopoietic cells does not impact blood cell formation or leukemogenesis
Authors: Dressel Nicole , Natusch Loreen , Munz Clara M. , Costas Ramon Santiago , Morcos Mina N.F. , Loff Anja , Hiller Björn , Haase Christa , Schulze Livia , Müller Patrick , Lesche Mathias , Dahl Andreas , Luksch Hella , Roesen-Wolff Angela , Roers Axel , Behrendt Rayk , Gerbaulet Alexander
Published: September 2024

Transcriptome analysis
Supplementary Table 3 from Apolipoprotein E2 Stimulates Protein Synthesis and Promotes Melanoma Progression
Authors: Adaku Nneoma , Ostendorf Benjamin N. , Mei Wenbin , Tavazoie Sohail F.
Published: September 2024

Full GSEA results TCGA
Supplementary Figures from Pre-existing immunity drives the response to neoadjuvant chemotherapy in esophageal adenocarcinoma
Authors: Arbore Giuseppina , Albarello Luca , Bucci Gabriele , Punta Marco , Cossu Andrea , Fanti Lorella , Maurizio Aurora , Di Mauro Francesco , Bilello Vito , Arrigoni Gianluigi , Bonfiglio Silvia , Biancolini Donatella , Puccetti Francesco , Elmore Ugo , Vago Luca , Cascinu Stefano , Tonon Giovanni , Rosati Riccardo , Casorati Giulia , Dellabona Paolo
Published: September 2024

Supplementary Figures S1 to S14
Supplementary Figure 1. Multidimensional analysis of baseline EAC tumor and blood
samples
Supplementary Figure 2. Baseline higher immune gene signatures and reduced
resistance to stress are associated with response to neoadjuvant chemotherapy.
Supplementary Figure 3. Immunohistochemistry for Foxp3, CD163, CD45RO
performed on treatment-naïve EACs
Supplementary Figure 4. Immunohistochemistry on treatment-naïve EACs for
CD3, CD4, CD8 and CD68
Supplementary Figure 5. Digital spatial profiling of the proteome in treatment-naïve EACs
Supplementary Figure 6. Panels for flow cytometry analysis of T lymphocytes
Supplementary Figure 7. High-dimensional flow cytometry analysis of CD4+ tumorinfiltrating
lymphocytes
Supplementary Figure 8. High-dimensional flow cytometry analysis of CD8+ tumorinfiltrating
lymphocytes
Supplementary Figure 9. Panels showing flow cytometry analysis of CD3- immune cell
subsets
Supplementary Figure 10. High-dimensional flow cytometry analysis of tumor-infiltrating
CD45+CD3- cells
Supplementary Figure 11. High-dimensional flow cytometry analysis of circulating CD4+
lymphocytes
Supplementary Figure 12. High-dimensional flow cytometry analysis of circulating CD8+
lymphocytes
Supplementary Figure 13. High-dimensional flow cytometry analysis of circulating
CD45+CD3- cells
Supplementary Figure 14. Concentrations of plasma cytokines in EAC patients
before neoadjuvant chemotherapy
Figure S7 from Crosstalk between myeloid and B cells shapes the distinct microenvironments of primary and secondary liver cancer
Authors: Chen Zhihang , Zhang Guopei , Ren Xiaoxue , Yao Zhijia , Zhou Qian , Ren Xuxin , Chen Shuling , Xu Lixia , Sun Kaiyu , Zeng Qianwen , Kuang Ming , Kuang Dong-Ming , Peng Sui
Published: September 2024

Figure S7
Figure S5 from Crosstalk between myeloid and B cells shapes the distinct microenvironments of primary and secondary liver cancer
Authors: Chen Zhihang , Zhang Guopei , Ren Xiaoxue , Yao Zhijia , Zhou Qian , Ren Xuxin , Chen Shuling , Xu Lixia , Sun Kaiyu , Zeng Qianwen , Kuang Ming , Kuang Dong-Ming , Peng Sui
Published: September 2024

Figure S5
Table S6 from CD25high Effector Regulatory T Cells Hamper Responses to PD-1 Blockade in Triple-Negative Breast Cancer
Authors: Fattori Stéphane , Le Roy Aude , Houacine Jemila , Robert Lucie , Abes Riad , Gorvel Laurent , Granjeaud Samuel , Rouvière Marie-Sarah , Ben Amara Amira , Boucherit Nicolas , Tarpin Carole , Pakradouni Jihane , Charafe-Jauffret Emmanuelle , Houvenaeghel Gilles , Lambaudie Eric , Bertucci Francois , Rochigneux Philippe , Gonçalves Anthony , Foussat Arnaud , Chrétien Anne-Sophie , Olive Daniel
Published: September 2024

Mass cytometry panels, related to Figure 1
Table S5 from CD25high Effector Regulatory T Cells Hamper Responses to PD-1 Blockade in Triple-Negative Breast Cancer
Authors: Fattori Stéphane , Le Roy Aude , Houacine Jemila , Robert Lucie , Abes Riad , Gorvel Laurent , Granjeaud Samuel , Rouvière Marie-Sarah , Ben Amara Amira , Boucherit Nicolas , Tarpin Carole , Pakradouni Jihane , Charafe-Jauffret Emmanuelle , Houvenaeghel Gilles , Lambaudie Eric , Bertucci Francois , Rochigneux Philippe , Gonçalves Anthony , Foussat Arnaud , Chrétien Anne-Sophie , Olive Daniel
Published: September 2024

Differentially expressed genes between intratumoral TNFRSF9+ eTregs versus TNFRSF9- eTregs, related to Figure 1
Supplementary_Materials_and_Methods_Figures_and_Figure_legends from CD25high Effector Regulatory T Cells Hamper Responses to PD-1 Blockade in Triple-Negative Breast Cancer
Authors: Fattori Stéphane , Le Roy Aude , Houacine Jemila , Robert Lucie , Abes Riad , Gorvel Laurent , Granjeaud Samuel , Rouvière Marie-Sarah , Ben Amara Amira , Boucherit Nicolas , Tarpin Carole , Pakradouni Jihane , Charafe-Jauffret Emmanuelle , Houvenaeghel Gilles , Lambaudie Eric , Bertucci Francois , Rochigneux Philippe , Gonçalves Anthony , Foussat Arnaud , Chrétien Anne-Sophie , Olive Daniel
Published: September 2024

Supplementary_Materials_and_Methods_Figures_and_Figure_legends
Supplementary Fig. 8 from Spatial profiling of circular RNAs in cancer reveals high expression in muscle and stromal cells
Authors: García-Rodríguez Juan L. , Korsgaard Ulrik , Ahmadov Ulvi , Jarlstad Olesen Morten T. , Dietrich Kim-Gwendolyn , Hansen Emma B. , Vissing Stine M. , Ulhøi Benedicte P. , Dyrskjøt Lars , Sørensen Karina D. , Kjems Jørgen , Hager Henrik , Kristensen Lasse S.
Published: September 2024

Single molecule in situ hybridization for circSLC8A1 in bladder adenocarcinoma. Brightfield and fluorescent microscopy images of circSLC8A1 at 200X magnification. A signal from circSLC8A1 can be observed in muscle cells, whereas the cancer cells were negative.
Supplementary Data from Targeting the immunoglobulin IGSF9 enhances anti-tumor T cell activity and sensitivity to anti-PD-1 immunotherapy
Authors: Liu Yifan , Wang Hongying , Zhao Xinyu , Zhang Jiashen , Zhao Zhiling , Lian Xia , Zhang Juan , Kong Feng , Hu Tao , Wang Ting , Li Xiaohua , Wang Lei , Wang Dapeng , Li Chunling , Luan Huiwen , Liu Xiaoli , Wang Chunyan , Jiang Yun , Li Xiaomin , Li Fangmin , Ji Shuhao , Wang Yaopeng , Li Zunling
Published: September 2024

Supplementary material and methods and Supplementary tables
Figure S6 from Targeting the immunoglobulin IGSF9 enhances anti-tumor T cell activity and sensitivity to anti-PD-1 immunotherapy
Authors: Liu Yifan , Wang Hongying , Zhao Xinyu , Zhang Jiashen , Zhao Zhiling , Lian Xia , Zhang Juan , Kong Feng , Hu Tao , Wang Ting , Li Xiaohua , Wang Lei , Wang Dapeng , Li Chunling , Luan Huiwen , Liu Xiaoli , Wang Chunyan , Jiang Yun , Li Xiaomin , Li Fangmin , Ji Shuhao , Wang Yaopeng , Li Zunling
Published: September 2024

THP-1-igsf9-WT not -igsf9-KO cells inhibited T cell proliferation in vitro.