bluuebunny/crossref_metadata_2025 huggingface dataset:
Common Shortcomings in Study on Radiopharmaceutical Design Research: A Case Study of 99mTc-Labelled Methotrexate
Authors: Koźmiński Przemysław , Halik Paweł Krzysztof , Chesori Raphael , Gniazdowska Ewa
Published: September 2021

The aim of the work carried out was to draw attention to shortcomings that often appear at the stage of designing new radiopharmaceuticals. Based on a case study of 99mTc-labelled methotrexate, this article describes frequent mistakes or misconceptions present not only in the referenced studies, but also in numerous radiopharmaceutical studies. The recommendations provided in this article highlight fundamental aspects of the credibility of radiopharmaceutical scientific research leading to the reliable results.
Flower-Like Dual-Defective Z-Scheme Heterojunction g-C3N4/ZnIn2S4 High-Efficiency Photocatalytic Hydrogen Evolution and Degradation of Mixed Pollutants
Authors: Hou Linlin , Wu Zhiliang , Jin Chun , Li Wei , Wei Qiuming , Chen Yasi , Wang Teng
Published: September 2021

Graphitic carbon nitride (g-C3N4) with a porous nano-structure, nitrogen vacancies, and oxygen-doping was prepared by the calcination method. Then, it was combined with ZnIn2S4 nanosheets containing zinc vacancies to construct a three-dimensional (3D) flower-like Z-scheme heterojunction (pCN-N/ZIS-Z), which was used for photocatalytic hydrogen evolution and the degradation of mixed pollutants. The constructed Z-scheme heterojunction improved the efficiency of photogenerated charges separation and migration, and the large surface area and porous characteristics provided more active sites. Doping and defect engineering can change the bandgap structure to improve the utilization of visible light, and can also capture photogenerated electrons to inhibit recombination, so as to promote the use of photogenerated electron-hole pairs in the photocatalytic redox process. Heterojunction and defect engineering synergized to form a continuous and efficient conductive operation framework, which achieves the hydrogen production of pCN-N/ZIS-Z (9189.8 µmol·h−1·g−1) at 58.9 times that of g-C3N4 (155.9 µmol·h−1·g−1), and the degradation rates of methyl orange and metronidazole in the mixed solution were 98.7% and 92.5%, respectively. Our research provides potential ideas for constructing a green and environmentally friendly Z-scheme heterojunction catalyst based on defect engineering to address the energy crisis and environmental restoration.
Rapid Removal of Mercury from Water by Novel MOF/PP Hybrid Membrane
Authors: Gao Jian , Li Ziming , Deng Ziqi , Liu Meihua , Wei Wei , Zheng Chunbai , Zhang Yifan , Chen Shusen , Deng Pengyang
Published: September 2021

Mercury is one of the most toxic heavy metals that can cause terrible disease for human beings. Among different absorption materials, MOF (metal–organic framework) materials show potential as very attractive materials for the rapid removal of mercury. However, the instability and difficulty for regeneration of MOF crystals limit their applications. Here, a continuous sulfur-modified MOF (UiO-66-NHC(S)NHMe) layer was synthesized in situ on polymeric membranes (PP non-woven fabrics) by post-synthetic modification and used for rapid mercury removal. The MOF-based membrane (US-N) showed high selectivity for mercury in different aqueous systems, which is better than sulfur-modified MOF powders. A thinner MOF layer on US-N showed a much better mercury ion removal performance. US-N with a 59.3 nm MOF layer could remove more than 85% of mercury in 20 min from an aqueous solution. In addition, the US-N can simply regenerate several times for mercury removal and maintain the initial performance (removal ratio > 98%), exhibiting excellent durability and stability. This work promotes the application of MOF materials in the rapid removal of hazardous heavy metal ions from practical environments.
Miniature Fabry-Perot Cavity Based on Fiber Bragg Gratings Fabricated by Fs Laser Micromachining Technique
Authors: Lei Luohao , Li Hongye , Shi Jing , Hu Qihao , Zhao Xiaofan , Wu Baiyi , Wang Meng , Wang Zefeng
Published: September 2021

Fabry-Perot cavity (FPC) based on Fiber Bragg gratings (FBGs) is an excellent candidate for fiber sensing and high-precision measurement. The advancement of the femtosecond laser micromachining technique provides more choices for the fabrication of FBGs-based FPCs. In this paper, we fabricate miniature FBGs-based FPCs, using the femtosecond laser line-by-line scanning writing technique for the first time. By this method, the FBGs can be limited to a specific area in the fiber core region. The grating length, position, and the distance between two successive FBGs can be conveniently controlled to achieve the desired transmission spectrum. For future applications in sensing, the temperature and strain responses of the fabricated FBGs-based FPCs were studied experimentally. This work provides a meaningful guidance for the fabrication and application of miniature FPCs based on FBGs.
Carbon Dots: Classification, Properties, Synthesis, Characterization, and Applications in Health Care—An Updated Review (2018–2021)
Authors: Mansuriya Bhargav D. , Altintas Zeynep
Published: September 2021

Carbon dots (CDs) are usually smaller than 10 nm in size, and are meticulously formulated and recently introduced nanomaterials, among the other types of carbon-based nanomaterials. They have gained significant attention and an incredible interest in the field of nanotechnology and biomedical science, which is merely due to their considerable and exclusive attributes; including their enhanced electron transferability, photobleaching and photo-blinking effects, high photoluminescent quantum yield, fluorescence property, resistance to photo-decomposition, increased electrocatalytic activity, good aqueous solubility, excellent biocompatibility, long-term chemical stability, cost-effectiveness, negligible toxicity, and acquaintance of large effective surface area-to-volume ratio. CDs can be readily functionalized owing to the abundant functional groups on their surfaces, and they also exhibit remarkable sensing features such as specific, selective, and multiplex detectability. In addition, the physico-chemical characteristics of CDs can be easily tunable based on their intended usage or application. In this comprehensive review article, we mainly discuss the classification of CDs, their ideal properties, their general synthesis approaches, and primary characterization techniques. More importantly, we update the readers about the recent trends of CDs in health care applications (viz., their substantial and prominent role in the area of electrochemical and optical biosensing, bioimaging, drug/gene delivery, as well as in photodynamic/photothermal therapy).
Long Non-Coding RNA Regulation of Epigenetics in Vascular Cells
Authors: Garratt Hester , Ashburn Robert , Sopić Miron , Nogara Antonella , Caporali Andrea , Mitić Tijana
Published: September 2021

The vascular endothelium comprises the interface between the circulation and the vessel wall and, as such, is under the dynamic regulation of vascular signalling, nutrients, and hypoxia. Understanding the molecular drivers behind endothelial cell (EC) and vascular smooth muscle cell (VSMC) function and dysfunction remains a pivotal task for further clinical progress in tackling vascular disease. A newly emerging era in vascular biology with landmark deep sequencing approaches has provided us with the means to profile diverse layers of transcriptional regulation at a single cell, chromatin, and epigenetic level. This review describes the roles of major vascular long non-coding RNA (lncRNAs) in the epigenetic regulation of EC and VSMC function and discusses the recent progress in their discovery, detection, and functional characterisation. We summarise new findings regarding lncRNA-mediated epigenetic mechanisms—often regulated by hypoxia—within the vascular endothelium and smooth muscle to control vascular homeostasis in health and disease. Furthermore, we outline novel molecular techniques being used in the field to delineate the lncRNA subcellular localisation and interaction with proteins to unravel their biological roles in the epigenetic regulation of vascular genes.
MicroRNA Isoforms Contribution to Melanoma Pathogenesis
Authors: Broseghini Elisabetta , Dika Emi , Londin Eric , Ferracin Manuela
Published: September 2021

Cutaneous melanoma (CM) is the most lethal tumor among skin cancers, and its incidence is constantly increasing. A deeper understanding of the molecular processes guiding melanoma pathogenesis could improve diagnosis, treatment and prognosis. MicroRNAs play a key role in melanoma biology. Recently, next generation sequencing (NGS) experiments, designed to assess small-RNA expression, revealed the existence of microRNA variants with different length and sequence. These microRNA isoforms are known as isomiRs and provide an additional layer to the complex non-coding RNA world. Here, we collected data from NGS experiments to provide a comprehensive characterization of miRNA and isomiR dysregulation in benign nevi (BN) and early-stage melanomas. We observed that melanoma and BN express different and specific isomiRs and have a different isomiR abundance distribution. Moreover, isomiRs from the same microRNA can have opposite expression trends between groups. Using The Cancer Genome Atlas (TCGA) dataset of skin cancers, we analyzed isomiR expression in primary melanoma and melanoma metastasis and tested their association with NF1, BRAF and NRAS mutations. IsomiRs differentially expressed were identified and catalogued with reference to the canonical form. The reported non-random dysregulation of specific isomiRs contributes to the understanding of the complex melanoma pathogenesis and serves as the basis for further functional studies.
Emergence of Reassortment between a New and Reported Types of Betanodavirus in Shellfish
Authors: Kim Young Chul , Min Joon Gyu , Kim Kwang Il , Jeong Hyun Do
Published: September 2021

Recently, three types of betanodavirus including red spotted grouper nervous necrosis virus (RGNNV), barfin flounder nervous necrosis virus (BFNNV), and Korean shellfish nervous necrosis virus (KSNNV) (proposed as a new fifth type) have been detected in shellfish in the marine environment around Korea. To investigate the presence of reassortment between betanodavirus types, the type based on the RNA2 segment of betanodaviruses carried in 420 domestic shellfish (n = 306) and finfish (n = 35), as well as imported shellfish (n = 79), was compared with the type identified by reverse-transcriptase polymerase chain reaction (RT-PCR) for RNA1 segment. Only five samples carrying reassortant betanodaviruses were found, appearing as RG/KSNNV (n = 2), KS/RGNNV (n = 1), and SJ/RGNNV (n = 2) types. From these samples, we successfully isolated two reassortant strains from Korean and Chinese shellfish in E-11 cells and called them KG1-reKS/RG and CM1-reRG/KS, respectively. In the full genome sequences, each RNA segment of the reassortant strains exhibited the same gene length and high sequence homology (≥98%) with the reference strains corresponding to the type of each segment. Both these reassortant strains induced high mortality to sevenband grouper (Epinephelus septemfasciatus) larvae with high viral concentrations in the body (109 viral particles/mg) and severe vacuolation in the retina and brain. These are the first results showing the involvement of the KSNNV type in the reassortment of RNA segments in the reported types of betanodavirus, which could represent a new potential risk in fish.
Angiostrongylosis in Animals and Humans in Europe
Authors: Morgan Eric R. , Modry David , Paredes-Esquivel Claudia , Foronda Pilar , Traversa Donato
Published: September 2021

Lungworms in the genus Angiostrongylus cause disease in animals and humans. The spread of Angiostrongylus vasorum within Europe and the recent establishment of Angiostrongylus cantonensis increase the relevance of these species to veterinary and medical practitioners, and to researchers in parasitology, epidemiology, veterinary science and ecology. This review introduces the key members of the genus present in Europe and their impacts on health, and updates the current epidemiological situation. Expansion of A. vasorum from localized pockets to wide distribution across the continent has been confirmed by a rising prevalence in foxes and increasing reports of infection and disease in dogs, while the list of carnivore and mustelid definitive hosts continues to grow. The tropically distributed rat lungworm A. cantonensis, meanwhile, has been recorded on islands south of Europe, previously the Canary Islands, and now also the Balearic Islands, although so far with limited evidence of zoonotic disease. Other members of the genus, namely, A. chabaudi, A. daskalovi and A. dujardini, are native to Europe and mainly infect wildlife, with unknown consequences for populations, although spill-over can occur into domestic animals and those in zoological collections. The epidemiology of angiostrongylosis is complex, and further research is needed on parasite maintenance in sylvatic hosts, and on the roles of ecology, behaviour and genetics in disease emergence. Improved surveillance in animals and humans is also required to support risk assessments and management.
Antibiotic Resistance and Plasmid Profile Analysis of Salmonella Enteritidis Isolated in Siberia and the Far East of Russia between 1990 and 2017
Authors: Rakov Alexey V. , Kuznetsova Natalya A.
Published: September 2021

Salmonella is one of the major causes of foodborne disease outbreaks globally. Specifically, Salmonella enterica subsp. enterica serovar Enteritidis (S. Enteritidis) is one of the major causes of zoonotic Salmonella infection in humans worldwide. In this study, we present data on antimicrobial resistance (AMR) and plasmid profiles of S. Enteritidis strains isolated from patients, food, and the environment in Siberia and the Far East of Russia obtained during Salmonella monitoring between 1990 and 2017. A total of 345 S. Enteritidis isolates were tested by the disk diffusion method with a set of 15 antibiotics using EUCAST breakpoints v. 10 and by plasmid profile analysis using the alkaline lysis method. The results have shown a substantial decrease in susceptibility to aminoglycosides and quinolones during the study period. No significant differences were found in the susceptibility of strains between regions as well as in the its correlation with different plasmid types of the pathogen. Several S. Enteritidis strains were found to be resistant to ampicillin, kanamycin, tetracycline, chloramphenicol, and cephalosporins. All tested S. Enteritidis strains were susceptible only to imipenem. In this study, we observed a relatively low level of AMR in S. Enteritidis strains isolated in Siberia and the Far East of Russia. Nevertheless, it is important to continue the molecular genetic monitoring and AMR surveillance of S. Enteritidis to track further increases in AMR using conventional phenotypic susceptibility testing and by introducing whole-genome sequencing to identify AMR mechanisms.
Plasmepsin-like Aspartyl Proteases in Babesia
Authors: Šnebergerová Pavla , Bartošová-Sojková Pavla , Jalovecká Marie , Sojka Daniel
Published: September 2021

Apicomplexan genomes encode multiple pepsin-family aspartyl proteases (APs) that phylogenetically cluster to six independent clades (A to F). Such diversification has been powered by the function-driven evolution of the ancestral apicomplexan AP gene and is associated with the adaptation of various apicomplexan species to different strategies of host infection and transmission through various invertebrate vectors. To estimate the potential roles of Babesia APs, we performed qRT-PCR-based expressional profiling of Babesia microti APs (BmASP2, 3, 5, 6), which revealed the dynamically changing mRNA levels and indicated the specific roles of individual BmASP isoenzymes throughout the life cycle of this parasite. To expand on the current knowledge on piroplasmid APs, we searched the EuPathDB and NCBI GenBank databases to identify and phylogenetically analyse the complete sets of APs encoded by the genomes of selected Babesia and Theileria species. Our results clearly determine the potential roles of identified APs by their phylogenetic relation to their homologues of known function—Plasmodium falciparum plasmepsins (PfPM I–X) and Toxoplasma gondii aspartyl proteases (TgASP1–7). Due to the analogies with plasmodial plasmepsins, piroplasmid APs represent valuable enzymatic targets that are druggable by small molecule inhibitors—candidate molecules for the yet-missing specific therapy for babesiosis.
The Association between New World Alphasatellites and Bipartite Begomoviruses: Effects on Infection and Vector Transmission
Authors: Nogueira Angélica M. , Nascimento Monique B. , Barbosa Tarsiane M. C. , Quadros Ayane F. F. , Gomes João Paulo A. , Orílio Anelise F. , Barros Danielle R. , Zerbini Francisco Murilo
Published: September 2021

Begomoviruses can be found in association with alphasatellites, which are capable of autonomous replication but are dependent on the helper begomovirus for systemic infection, encapsidation and vector transmission. Previous studies suggest that the presence of NW alphasatellites (genus Clecrusatellite) is associated with more severe symptoms. To better understand this interaction, we investigated the effects of two alphasatellites on infectivity, symptom development, viral DNA accumulation and vector transmission of three begomoviruses in three hosts. In tomato and Nicotiana benthamiana, all combinations were infectious. In Leonurus sibiricus, only the ToYSV/ToYSA combination was infectious. The presence of EuYMA increased symptom severity of EuYMV and ToYSV in N. benthamiana, and the presence of ToYSA was associated with more severe symptoms of ToYSV in N. benthamiana and L. sibiricus. EuYMA increased the accumulation of ToYSV in N. benthamiana but reduced the accumulation of EuYMV in tomato and of ToSRV in N. benthamiana. The presence of ToYSA decreased the accumulation of ToYSV in N. benthamiana and L. sibiricus. ToYSA negatively affected transmission of ToSRV by Bemisia tabaci MEAM1. Together, our results indicate that NW alphasatellites can interact with different begomoviruses, increasing symptom severity and interfering in the transmission of the helper begomovirus. Understanding this interaction is important as it may affect the emergence of diseases caused by begomovirus–alphasatellite complexes in the field.
Use of the Professional Fulfillment Index in Pharmacists: A Confirmatory Factor Analysis
Authors: Fadare Olajide O. , Doucette William R. , Gaither Caroline A. , Schommer Jon C. , Arya Vibhuti , Bakken Brianne , Kreling David H. , Mott David A. , Witry Matthew J.
Published: September 2021

Most research on pharmacist professional wellbeing has focused on measuring burnout. However, using valid and reliable instruments to assess professional fulfillment in pharmacists can expand understanding of pharmacists’ professional wellbeing. This study aimed to (1) establish the validity of the Professional Fulfillment Index (PFI) for a sample of pharmacists licensed in the United States (US) using confirmatory factor analysis (CFA), and (2) compare the professional wellbeing of pharmacists across demographics and work settings. Data for this study were obtained from the 2019 National Pharmacy Workforce Survey (NPWS). The survey assessed pharmacist professional wellbeing using the PFI. The model fit of the PFI was assessed using CFA. Multiple linear regression was used to compare pharmacist wellbeing across demographics and work settings. The CFA affirmed that the PFI possesses a satisfactory model fit for use in pharmacists. Regression analysis showed higher burnout (work exhaustion and interpersonal disengagement) was associated with decreasing age, being female, working more hours, and working in a community pharmacy. Higher professional fulfillment was associated with men, and working in non-community pharmacy work settings. The PFI is a psychometrically reliable and valid instrument for assessing the professional wellbeing of pharmacists.
Structural and Optical Properties of Bi12NiO19 Sillenite Crystals: Application for the Removal of Basic Blue 41 from Wastewater
Authors: Brahimi Billal , Kenfoud Hamza , Benrighi Yasmine , Baaloudj Oussama
Published: September 2021

This article covers the structural and optical property analysis of the sillenite Bi12NiO19 (BNO) in order to characterize a new catalyst that could be used for environmental applications. BNO crystals were produced by the combustion method using Polyvinylpyrrolidone as a combustion reagent. Different approaches were used to characterize the resulting catalyst. Starting with X-ray diffraction (XRD), the structure was refined from XRD data using the Rietveld method and then the structural form of this sillenite was illustrated for the first time. This catalyst has a space group of I23 with a lattice parameter of a = 10.24 Å. In addition, the special surface area (SSA) of BNO was determined by the Brunauer-Emmett-Teller (BET) method. It was found in the range between 14.56 and 20.56 cm2·g−1. Then, the morphology of the nanoparticles was visualized by Scanning Electron Microscope (SEM). For the optical properties of BNO, UV-VIS diffusion reflectance spectroscopy (DRS) was used, and a 2.1 eV optical bandgap was discovered. This sillenite′s narrow bandgap makes it an effective catalyst for environmental applications. The photocatalytic performance of the synthesized Bi12NiO19 was examined for the degradation of Basic blue 41. The degradation efficiency of BB41 achieved 98% within just 180 min at pH ~9 and with a catalyst dose of 1 g/L under visible irradiation. The relevant reaction mechanism and pathways were also proposed in this work.
Supervisor of the Universe
Authors: Berezin Victor A. , Dokuchaev Vyacheslav I.
Published: September 2021

In this paper, conformal invariant gravitation, based on Weyl geometry, is considered. In addition to the gravitational and matter action integrals, the interaction between the Weyl vector (entered in Weyl geometry) and the vector, representing the world line of the independent observer, are introduced. It is shown that the very existence of such an interaction selects the exponentially growing scale factor solutions among the cosmological vacua.
Antagonism to Plant Pathogens by Epichloë Fungal Endophytes—A Review
Authors: Card Stuart D. , Bastías Daniel A. , Caradus John R.
Published: September 2021

Epichloë is a genus of filamentous fungal endophytes that has co-evolved with cool-season grasses with which they form long-term, symbiotic associations. The most agriculturally important associations for pasture persistence for grazing livestock are those between asexual vertically transmitted Epichloë strains and the pasture species, perennial ryegrass, and tall fescue. The fungus confers additional traits to their host grasses including invertebrate pest deterrence and drought tolerance. Selected strains of these mutualistic endophytes have been developed into highly efficacious biocontrol products and are widely utilized within the Americas, Australia, and New Zealand for pasture persistence. Less publicized is the antagonism Epichloë endophytes display towards multiple species of saprophytic and pathogenic microbes. This opinion piece will review the current literature on antimicrobial properties exhibited by this genus of endophyte and discuss the reasons why this trait has historically remained a research curiosity rather than a trait of commercial significance.
Contributions of Climate and Soil Properties to Wheat and Maize Yield Based on Long-Term Fertilization Experiments
Authors: Wei Shengbao , Peng Anchun , Huang Xiaomin , Deng Aixing , Chen Changqing , Zhang Weijian
Published: September 2021

Identifying the contributions of climate factors and soil fertility to crop yield is significant for the assessment of climate change impacts on crop production. Three 20-year field experiments were conducted in major Chinese wheat-maize cropping areas. Over the 20-year period, crop yield and soil properties showed significantly dissimilar variation trends under similar climate changes at each experimental site. The correlation between climatic factors and crop yield varied greatly among the fertilization regimes and experimental sites. Across all the fertilization regimes and the experimental sites, the average contribution rates of soil properties to wheat and maize yield were 45.7% and 53.2%, respectively, without considering climate factors, and 40.4% and 36.6%, respectively, when considering climate factors. The contributions of soil properties to wheat and maize yield variation when considering climate factors were significantly lower than those without considering climate factors. Across all experimental sites and all fertilization regimes, the mean contribution rates of climate factors to wheat and maize yield were 29.5% and 33.0%, respectively. The contribution rates of the interaction of climate and soil to wheat and maize yield were 3.7% and −0.9%, respectively. Under balanced fertilization treatments (NPK and NPKM), the change in the contribution rate of soil properties to wheat or maize yield was not obvious, and the average contribution rates of the interaction of climate and soil to wheat and maize yield were positive, at 14.8% and 9.5%, respectively. In contrast, under unbalanced fertilization treatments (CK and N), the contribution rates of soil properties to wheat or maize yield decreased, and the average contribution rates of the interaction of climate and soil were negative, at −7.4% and −11.2%, respectively. The above results indicate that climate and soil synergistically affected crop yields and that, with the optimization of the fertilization regime, positive interactions gradually emerged.
Identification and Characterization of Rice OsHKT1;3 Variants
Authors: Imran Shahin , Tsuchiya Yoshiyuki , Tran Sen Thi Huong , Katsuhara Maki
Published: September 2021

In rice, the high-affinity K+ transporter, OsHKT1;3, functions as a Na+-selective transporter. mRNA variants of OsHKT1;3 have been reported previously, but their functions remain unknown. In this study, five OsHKT1;3 variants (V1-V5) were identified from japonica rice (Nipponbare) in addition to OsHKT1;3_FL. Absolute quantification qPCR analyses revealed that the transcript level of OsHKT1;3_FL was significantly higher than other variants in both the roots and shoots. Expression levels of OsHKT1;3_FL, and some variants, increased after 24 h of salt stress. Two electrode voltage clamp experiments in a heterologous expression system using Xenopus laevis oocytes revealed that oocytes expressing OsHKT1;3_FL and all of its variants exhibited smaller Na+ currents. The presented data, together with previous data, provide insights to understanding how OsHKT family members are involved in the mechanisms of ion homeostasis and salt tolerance in rice.
Optimized RNA-Silencing Strategies for Rice Ragged Stunt Virus Resistance in Rice
Authors: Lacombe Severine , Bangratz Martine , Ta Hoang Anh , Nguyen Thanh Duc , Gantet Pascal , Brugidou Christophe
Published: September 2021

Rice ragged stunt virus (RRSV) is one of the most damaging viruses of the rice culture area in south and far-eastern Asia. To date, no genetic resistance has been identified and only expensive and non-environmentally friendly chemical treatments are deployed to fight this important disease. Non-chemical approaches based on RNA-silencing have been developed as resistance strategies against viruses. Here, we optimized classical miRNA and siRNA-based strategies to obtain efficient and durable resistance to RRSV. miRNA-based strategies are involved in producing artificial miRNA (amiR) targeting viral genomes in plants. Classically, only one amiR is produced from a single construct. We demonstrated for the first time that two amiRs targeting conserved regions of RRSV genomes could be transgenically produced in Nicotiana benthamiana and in rice for a single precursor. Transgenic rice plants producing either one or two amiR were produced. Despite efficient amiR accumulations, miRNA-based strategies with single or double amiRs failed to achieve efficient RRSV resistance in transformed rice plants. This suggests that this strategy may not be adapted to RRSV, which could rapidly evolve to counteract them. Another RNA-silencing-based method for viral resistance concerns producing several viral siRNAs targeting a viral fragment. These viral siRNAs are produced from an inverted repeat construct carrying the targeted viral fragment. Here, we optimized the inverted repeat construct using a chimeric fragment carrying conserved sequences of three different RRSV genes instead of one. Of the three selected homozygous transgenic plants, one failed to accumulate the expected siRNA. The two other ones accumulated siRNAs from either one or three fragments. A strong reduction of RRSV symptoms was observed only in transgenic plants expressing siRNAs. We consequently demonstrated, for the first time, an efficient and environmentally friendly resistance to RRSV in rice based on the siRNA-mediated strategy.
Arsenic Toxicity-Induced Physiological and Metabolic Changes in the Shoots of Pteris cretica and Spinacia oleracea
Authors: Zemanová Veronika , Pavlíková Daniela , Hnilička František , Pavlík Milan
Published: September 2021

Arsenic is a ubiquitous toxic element that can be accumulated into plant parts. The present study investigated the response of Pteris cretica and Spinacia oleracea to As treatment through the analysis of selected physiological and metabolic parameters. Plants were grown in pots in As(V) spiked soil (20 and 100 mg/kg). Plants’ physiological condition was estimated through the determination of elements, gas-exchange parameters, chlorophyll fluorescence, water potential, photosynthetic pigments, and free amino acid content. The results confirmed differing As accumulation in plants, as well as in shoots and roots, which indicated that P. cretica is an As-hyperaccumulator and that S. oleracea is an As-root excluder. Variations in physiological and metabolic parameters were observed among As treatments. Overall, the results revealed a significant effect of 100 mg/kg As treatment on the analysed parameters. In both plants, this treatment affected growth, N, Mg, S, Mn, and Zn content, as well as net photosynthetic rate, chlorophyll fluorescence, and total free amino acid content. In conclusion, the results reflect the similarity between P. cretica and S. oleracea in some aspects of plants’ response to As treatment, while physiological and metabolic parameter changes related to As treatments indicate the higher sensitivity of S. oleracea.
Phenolic Composition and Biological Properties of Rhus microphylla and Myrtillocactus geometrizans Fruit Extracts
Authors: Guía-García Jorge L. , Charles-Rodríguez Ana V. , López-Romero Julio C. , Torres-Moreno Heriberto , Genisheva Zlatina , Robledo-Olivo Armando , Reyes-Valdés M. Humberto , Ramírez-Godina Francisca , García-Osuna Hermila T. , Flores-López María L.
Published: September 2021

Plants from arid zones of Mexico are an interesting source of phytochemicals that exhibit a large number of biological properties. In this context, Rhus microphylla (Rm) and Myrtillocactus geometrizans (Mg) fruits have been used as folk remedies and to make traditional foods, respectively; however, studies on their composition and bioactivity are limited. Thus, the objective of this work was to evaluate the yields, phenolic composition, and bioactive properties (scavenging and reducing capacities, antiproliferative, and antifungal) of aqueous and hydroalcohol extracts of Rm and Mg fruits obtained by conventional agitation and ohmic heating (OH). The results showed that the Rm fruit extracts had the highest total phenolic content (TPC) values and the strongest scavenging and reducing capacities compared to those of Mg fruits, being characterized by the presence of gallic acid, while the composition of the Mg extracts varied with respect to the extraction conditions used. Regarding antifungal activity in vitro against two phytopathogenic fungi, Rhizopus stolonifer and Fusarium oxysporum, the hydroalcohol extracts obtained by conventional agitation of both plants (RmH-C and MgH-C) showed the best inhibitory effect, respectively. Interestingly, none of the extracts under study presented cytotoxicity against the noncancerous ARPE-19 cell line, while three extracts of Rm fruit exhibited a moderate antiproliferative activity against HeLa (cancerous) cell line. These findings reveal for the first time the potential of Rm and Mg fruits as a new source of bioactive compounds for future industrial applications.
Fusarium nirenbergiae (Fusarium oxysporum Species Complex) Causing the Wilting of Passion Fruit in Italy
Authors: Aiello Dalia , Fiorenza Alberto , Leonardi Giuseppa Rosaria , Vitale Alessandro , Polizzi Giancarlo
Published: September 2021

Passion fruit (Passiflora edulis Sims.) is an ever-increasing interest crop in Italy because it is mainly cultivated for its edible fruit and, secondly, as an ornamental evergreen climber. During the summer of 2020, two-year-old plants of purple passion fruit in one of the most important expanding production areas of Sicily (southern Italy) showed symptoms of yellowing, wilting, and vascular discoloration. Fusarium-like fungal colonies were consistently yielded from symptomatic crown and stem tissues. Five representative isolates were characterized by a morphological and molecular analysis based on a multilocus phylogeny using RNA polymerase’s second largest subunit (RPB2) and translation elongation factor 1-alpha (EF-1α) genes, as Fusarium nirenbergiae (Fusarium oxysporum species complex). Pathogenicity tests conducted on healthy 1-year-old passion fruit cuttings revealed symptoms similar to those observed in the field. To our knowledge, this is the first report of Fusarium wilt on passion fruit caused by Fusarium nirenbergiae. This report focuses on the phytopathological implications of this fungal pathogen, which may represent a future significant threat for the expanding passion fruit production in Italy and Europe.
Plant Metabolites and Regulation under Environmental Stress
Authors: Szepesi Ágnes
Published: September 2021

This Special Issue (SI) was planned to focus on abiotic stress-induced metabolic adjustments and their regulations in plants [...]
Allelopathic Effect of Selected Rice (Oryza sativa) Varieties against Barnyard Grass (Echinochloa cruss-gulli)
Authors: Rahaman Ferdoushi , Juraimi Abdul Shukor , Rafii Mohd Y. , Uddin Md. Kamal , Hassan Lutful , Chowdhury Abul Kashem , Bashar H. M. Khairul
Published: September 2021

Rice has been subjected to a great deal of stress during its brief existence, but it nevertheless ranked first among cereal crops in terms of demand and productivity. Weeds are characterized as one of the major biotic stresses by many researchers. This research aims to determine the most potential allelopathic rice variety among selected rice accessions. For obtaining preeminent varieties, seventeen rice genotypes were collected from Bangladesh and Malaysia. Two prevalent procedures, relay seeding and the sandwich technique were employed to screen the seventeen rice (donor) accessions against barnyard grass (tested plant). In both approaches, only the BR17 variety demonstrated substantial inhibition of germination percentage, root length, and dry matter of barnyard grass. The rice variety BR17 exclusively took the zenith position, and it inhibited the development of barnyard grass by more than 40–41% on an average. BR17 is originated from KN-1B-361-1-8-6-10 (Indonesia) and developed by the Bangladesh Rice Research Institute (BRRI), Gazipur, Bangladesh in 1985, having a high yielding capacity of more than 6 t/ha. Our study suggested that the usage of the allelopathy-weed inverse relationship to treat the weed problem can be a fantastic choice in the twenty-first century.
Morphological Variation in Scarlet Plume (Euphorbia fulgens Karw ex Klotzsch, Euphorbiaceae), an Underutilized Ornamental Resource of Mexico with Global Importance
Authors: Pérez-Nicolás Mónica , Colinas-León Teresa , Alia-Tejacal Iran , Peña-Ortega Gisela , González-Andrés Fernando , Beltrán-Rodríguez Leonardo
Published: September 2021

Morphological variation is useful in conservation and genetic improvement programs. Euphorbia fulgens, a range-restricted local endemic species of Mexico, is used locally during the altars in the festivities of different saints and is also cultivated as an ornamental plant mainly in Europe. Thus, in the present study, morphological variation was evaluated in wild populations and cultivated populations. Characterization of 90 individuals from three wild populations (the only ones recorded to date) was done by measuring 30 morphological traits both vegetative and reproductive. Thereafter, seeds were collected, and established under greenhouse conditions, and 39 morphometric variables were evaluated in adult plants. An analysis of variance (ANOVA) was done for wild and cultivated groups independently, and when significant differences were found, Tukey’s comparison of means was applied (p < 0.05). To identify the traits responsible for the differences between wild and cultivated groups, a linear discriminant analysis (LDA) was conducted. Morphological variation was found among wild populations, and this variation decreased in cultivated populations, mainly in reproductive structures. The LDA separated the wild populations from the cultivated groups, according to inflorescence length, petiole length/blade length ratio, and leaf roundness. The variables that determined the separation of individuals between wild and cultivated populations were cyme number, foliar Feret diameter, and inflorescence length, variables that can be important for breeding strategies and artificial selection.
Specification and DNA Barcoding of Thai Traditional Remedy for Chronic Kidney Disease: Pikad Tri-phol-sa-mut-than
Authors: Thariwong Suwimol , Intharuksa Aekkhaluck , Sirisa-ard Panee , Charoensup Wannaree , Chansakaow Sunee
Published: September 2021

The Pikad Tri-phol-sa-mut-than (TS) remedy, a Thai traditional medicine, is officially recorded in Tamra Paetsart Sonkrau Chabub Anurak for its capabilities in treating kidney deficiency. TS remedy is composed of three fruit species—Aegle marmelos (L.) Corrêa., Coriandrum sativum L., and Morinda citrifolia L.—in an equal part by weight. The quality of the raw material is one of the essential factors that can affect the effectiveness and safety of treatment by herbal remedy. The pharmacognostic evaluation and DNA barcode of the three fruit species and TS remedy were performed in this study to authenticate them from contamination, and to provide the scientific database for further uses. Macroscopic and microscopic examination, chemical profile by TLC, and DNA barcoding were employed to positively identify the raw materials bought from the herbal market, especially the powder form. Consequently, the outcomes of this investigation can be used to develop an essential and effective tool for the authentication of crude drugs and herbal remedies.
Salt Stress Amelioration in Maize Plants through Phosphogypsum Application and Bacterial Inoculation
Authors: Khalifa Tamer , Elbagory Mohssen , Omara Alaa El-Dein
Published: September 2021

The use of phosphogypsum (PG) and plant growth-promoting rhizobacteria (PGPR) for agricultural purposes are good options to improve soil properties and increase crop yield. The objective of this study was to investigate the effect of different rates of PG (ton ha−1; 0 (PG1), 3 (PG2), 6 (PG3), and 9 (PG4)) combined with PGPR inoculation (Azospirillum lipoferum (control, T1), A. lipoferum + Bacillus coagulans (T2), A. lipoferum + B. circulance (T3), and A. lipoferum + B. subtilis (T4)) on soil properties, plant physiology, antioxidant enzymes, nutrient uptake, and yield of maize plants (Zea mays L., cv. HSC 10) grown in salt-affected soil. Over two growing seasons, 2019 and 2020, field experiments were conducted as a split-plot design with triplicates. The results show that applying PG (9 ton ha−1) and co-inoculation (A. lipoferum + B. circulance) treatment significantly increased chlorophyll and carotenoids content, antioxidant enzymes, microbial communities, soil enzymes activity, and nutrient contents, and showed inhibitory impacts on proline content and pH, as well as EC and ESP, thus improving the productivity of maize plant compared to the control treatment. It could be concluded that PG, along with microbial inoculation, may be an important approach for ameliorating the negative impacts of salinity on maize plants.
Population Structure and Genetic Diversity of Two-Rowed Barley Accessions from Kazakhstan Based on SNP Genotyping Data
Authors: Almerekova Shyryn , Genievskaya Yuliya , Abugalieva Saule , Sato Kazuhiro , Turuspekov Yerlan
Published: September 2021

The genetic relationship and population structure of two-rowed barley accessions from Kazakhstan were assessed using single-nucleotide polymorphism (SNP) markers. Two different approaches were employed in the analysis: (1) the accessions from Kazakhstan were compared with barley samples from six different regions around the world using 1955 polymorphic SNPs, and (2) 94 accessions collected from six breeding programs from Kazakhstan were studied using 5636 polymorphic SNPs using a 9K Illumina Infinium assay. In the first approach, the neighbor-joining tree showed that the majority of the accessions from Kazakhstan were grouped in a separate subcluster with a common ancestral node; there was a sister subcluster that comprised mainly barley samples that originated in Europe. The Pearson’s correlation analysis suggested that Kazakh accessions were genetically close to samples from Africa and Europe. In the second approach, the application of the STRUCTURE package using 5636 polymorphic SNPs suggested that Kazakh barley samples consisted of five subclusters in three major clusters. The principal coordinate analysis plot showed that, among six breeding origins in Kazakhstan, the Krasnovodopad (KV) and Karaganda (KA) samples were the most distant groups. The assessment of the pedigrees in the KV and KA samples showed that the hybridization schemes in these breeding stations heavily used accessions from Ethiopia and Ukraine, respectively. The comparative analysis of the KV and KA samples allowed us to identify 214 SNPs with opposite allele frequencies that were tightly linked to 60 genes/gene blocks associated with plant adaptation traits, such as the heading date and plant height. The identified SNP markers can be efficiently used in studies of barley adaptation and deployed in breeding projects to develop new competitive cultivars.
Targeted Metabolic and In-Silico Analyses Highlight Distinct Glucosinolates and Phenolics Signatures in Korean Rapeseed Cultivars
Authors: Kim Joonyup , Sohn Soo In , Sathasivam Ramaraj , Khaskheli Allah Jurio , Kim Min Cheol , Kim Nam Su , Park Sang Un
Published: September 2021

Rapeseed is an economically important oilseed crop throughout the world. We examined the content and composition of glucosinolates (GSLs) and phenolics in the sprouts of seven Korean cultivars. A total of eight GSLs that include four aliphatic GSLs (AGSLs) (progoitrin, gluconapin, gluconapoleiferin, and glucobrassicanapin) and four indole GSLs (IGSLs) (4-methoxyglucobrassicin, 4-hydroxyglucobrassicin, neoglucobrassicin, and glucobrassicin) were identified in these cultivars. Of the total GSLs, the highest level was detected for progoitrin, while the lowest level was identified for glucobrassicanapin in all the cultivars. Phenolics that include chlorogenic acid, catechin hydrate, 4-hydroxybenzoic acid, gallic acid, ferulic acid, p-coumaric acid, epicatechin, caffeic acid, rutin, quercetin, trans-cinnamic acid, benzoic acid, and kaempferol were present in all the cultivars. Of these, rutin was identified with the highest level while trans-cinnamic acid was identified with the lowest level in all the cultivars. Cluster analysis revealed the unique metabolic signature of eight GSLs and thirteen phenolics for the seven cultivars of rapeseed, which implies that genomic commonality and variability resulted from the previous breeding program. Further, gene expression and cis-regulatory elements suggest that the biosynthesis of GSLs and phenolics of these cultivars appears to be regulated through transcription factors associated with stress responses, phytohormones, and cellular growth.
The Soybean High Density ‘Forrest’ by ‘Williams 82’ SNP-Based Genetic Linkage Map Identifies QTL and Candidate Genes for Seed Isoflavone Content
Authors: Knizia Dounya , Yuan Jiazheng , Bellaloui Nacer , Vuong Tri , Usovsky Mariola , Song Qijian , Betts Frances , Register Teresa , Williams Earl , Lakhssassi Naoufal , Mazouz Hamid , Nguyen Henry T. , Meksem Khalid , Mengistu Alemu , Kassem My Abdelmajid
Published: September 2021

Isoflavones are secondary metabolites that are abundant in soybean and other legume seeds providing health and nutrition benefits for both humans and animals. The objectives of this study were to construct a single nucleotide polymorphism (SNP)-based genetic linkage map using the ‘Forrest’ by ‘Williams 82’ (F×W82) recombinant inbred line (RIL) population (n = 306); map quantitative trait loci (QTL) for seed daidzein, genistein, glycitein, and total isoflavone contents in two environments over two years (NC-2018 and IL-2020); identify candidate genes for seed isoflavone. The FXW82 SNP-based map was composed of 2075 SNPs and covered 4029.9 cM. A total of 27 QTL that control various seed isoflavone traits have been identified and mapped on chromosomes (Chrs.) 2, 4, 5, 6, 10, 12, 15, 19, and 20 in both NC-2018 (13 QTL) and IL-2020 (14 QTL). The six QTL regions on Chrs. 2, 4, 5, 12, 15, and 19 are novel regions while the other 21 QTL have been identified by other studies using different biparental mapping populations or genome-wide association studies (GWAS). A total of 130 candidate genes involved in isoflavone biosynthetic pathways have been identified on all 20 Chrs. And among them 16 have been identified and located within or close to the QTL identified in this study. Moreover, transcripts from four genes (Glyma.10G058200, Glyma.06G143000, Glyma.06G137100, and Glyma.06G137300) were highly abundant in Forrest and Williams 82 seeds. The identified QTL and four candidate genes will be useful in breeding programs to develop soybean cultivars with high beneficial isoflavone contents.