bluuebunny/crossref_metadata_2025 huggingface dataset:
The Relationships among “STAY-GREEN” Trait, Post-Anthesis Assimilate Remobilization, and Grain Yield in Rice (Oryza sativa L.)
Authors: Zang Yuguang , Yao Yijia , Xu Zheshu , Wang Baoqing , Mao Yiqi , Wang Weilu , Zhang Weiyang , Zhang Hao , Liu Lijun , Wang Zhiqin , Liang Guohua , Yang Jianchang , Zhou Yong , Gu Junfei
Published: November 2022

The mobilization and translocation of carbohydrates and mineral nutrients from vegetative plant parts to grains are pivotal for grain filling, often involving a whole plant senescence process. Loss of greenness is a hallmark of leaf senescence. However, the relationship between crop yield and senescence has been controversial for many years. Here, in this study, the overexpression and RNA interference lines of gene of OsNYC3 (Non-Yellow Coloring 3), a chlorophyll catabolism gene, were investigated. Furthermore, exogenous phytohormones were applied, and a treatment of alternate wetting and moderate drying (AWMD) was introduced to regulate the processes of leaf senescence. The results indicated that the delayed senescence of the “STAY-GREEN” trait of rice is undesirable for the process of grain filling, and it would cause a lower ratio of grain filling and lower grain weight of inferior grains, because of unused assimilates in the stems and leaves. Through the overexpression of OsNYC3, application of exogenous chemicals of abscisic acid (ABA), and water management of AWMD, leaf photosynthesis was less influenced, a high ratio of carbohydrate assimilates was partitioned to grains other than leaves and stems as labeled by 13C, grain filling was improved, especially for inferior spikelets, and activities of starch-synthesizing enzymes were enhanced. However, application of ethephon not only accelerated leaf senescence, but also caused seed abortion and grain weight reduction. Thus, plant senescence needs to be finely adjusted in order to make a contribution to crop productivity.
Sex- and Neuropsychiatric-Dependent Circadian Alterations in Daily Voluntary Physical Activity Engagement and Patterns in Aged 3xTg-AD Mice
Authors: Alveal-Mellado Daniel , Castillo-Mariqueo Lidia , Giménez-Llort Lydia
Published: November 2022

Alzheimer’s disease (AD) patients suffer from circadian rhythm alterations affecting their daily physical activity patterns with less willingness to perform a voluntary exercise. In preclinical studies, there is no clarity on whether animal models of AD can replicate these impairments. Here, we provide a proof of concept of the performance and behavioral effects of four weeks of voluntary wheel running (VWR) in a group of 14-month-old male and female 3xTg-AD mice at advanced stages of AD and the daily variance (behavioral circadian rhythmicity) of VWR associated with sex and their neuropsychiatric-like phenotype. Higher levels of horizontal exploration in the open field (OF) test were found in mice submitted to exercise. A linear mixed effect model showed significant sex-dependent differences in the VWR activity performed on the first night of follow-up, with high-NIBI males running less than high-NIBI females. Thus, an influence of NPS-like symptoms on the circadian patterns of VWR may account for such differences. In addition, males remained more active than females during diurnal periods. We hypothesize that this increment in energy expenditure during resting periods may be related to hyperactive behavior, similar to that observed in humans’ exacerbated agitation or sundowning behavior. These findings support the usage of the 3xTg-AD mouse as a reliable model for studying circadian rhythm alterations in AD and, at the translational level, the importance of tailored and individualized physical activity programs in clinical settings.
Studying Stem Rust and Leaf Rust Resistances of Self-Fertile Rye Breeding Populations
Authors: Gruner Paul , Witzke Anne , Flath Kerstin , Eifler Jakob , Schmiedchen Brigitta , Schmidt Malthe , Gordillo Andres , Siekmann Dörthe , Fromme Franz Joachim , Koch Silvia , Piepho Hans-Peter , Miedaner Thomas
Published: November 2022

Stem rust (SR) and leaf rust (LR) are currently the two most important rust diseases of cultivated rye in Central Europe and resistant cultivars promise to prevent yield losses caused by those pathogens. To secure long-lasting resistance, ideally pyramided monogenic resistances and race-nonspecific resistances are applied. To find respective genes, we screened six breeding populations and one testcross population for resistance to artificially inoculated SR and naturally occurring LR in multi-environmental field trials. Five populations were genotyped with a 10K SNP marker chip and one with DArTseqTM. In total, ten SR-QTLs were found that caused a reduction of 5–17 percentage points in stem coverage with urediniospores. Four QTLs thereof were mapped to positions of already known SR QTLs. An additional gene at the distal end of chromosome 2R, Pgs3.1, that caused a reduction of 40 percentage points SR infection, was validated. One SR-QTL on chromosome 3R, QTL-SR4, was found in three populations linked with the same marker. Further QTLs at similar positions, but from different populations, were also found on chromosomes 1R, 4R, and 6R. For SR, additionally seedling tests were used to separate between adult-plant and all-stage resistances and a statistical method accounting for the ordinal-scaled seedling test data was used to map seedling resistances. However, only Pgs3.1 could be detected based on seedling test data, even though genetic variance was observed in another population, too. For LR, in three of the populations, two new large-effect loci (Pr7 and Pr8) on chromosomes 1R and 2R were mapped that caused 34 and 21 percentage points reduction in leaf area covered with urediniospores and one new QTL on chromosome 1R causing 9 percentage points reduction.
Iron- and Neuromelanin-Weighted Neuroimaging to Study Mitochondrial Dysfunction in Patients with Parkinson’s Disease
Authors: Pizarro-Galleguillos Benjamin Matis , Kunert Liesa , Brüggemann Norbert , Prasuhn Jannik
Published: November 2022

The underlying causes of Parkinson’s disease are complex, and besides recent advances in elucidating relevant disease mechanisms, no disease-modifying treatments are currently available. One proposed pathophysiological hallmark is mitochondrial dysfunction, and a plethora of evidence points toward the interconnected nature of mitochondria in neuronal homeostasis. This also extends to iron and neuromelanin metabolism, two biochemical processes highly relevant to individual disease manifestation and progression. Modern neuroimaging methods help to gain in vivo insights into these intertwined pathways and may pave the road to individualized medicine in this debilitating disorder. In this narrative review, we will highlight the biological rationale for studying these pathways, how distinct neuroimaging methods can be applied in patients, their respective limitations, and which challenges need to be overcome for successful implementation in clinical studies.
Sex Hormone Candidate Gene Polymorphisms Are Associated with Endometriosis
Authors: Golovchenko Ilya , Aizikovich Boris , Golovchenko Oleg , Reshetnikov Evgeny , Churnosova Maria , Aristova Inna , Ponomarenko Irina , Churnosov Mikhail
Published: November 2022

The present study was designed to examine whether sex hormone polymorphisms proven by GWAS are associated with endometriosis risk. Unrelated female participants totaling 1376 in number (395 endometriosis patients and 981 controls) were recruited into the study. Nine single-nucleotide polymorphisms (SNPs) which GWAS correlated with circulating levels of sex hormones were genotyped using a TaqMan allelic discrimination assay. FSH-lowering, and LH- and testosterone-heightening polymorphisms of the FSHB promoter (allelic variants A rs11031002 and C rs11031005) exhibit a protective effect for endometriosis (OR = 0.60–0.68). By contrast, the TT haplotype loci that were GWAS correlated with higher FSH levels and lower LH and testosterone concentrations determined an increased risk for endometriosis (OR = 2.03). Endometriosis-involved epistatic interactions were found between eight loci of sex hormone genes (without rs148982377 ZNF789) within twelve genetic simulation models. In silico examination established that 8 disorder-related loci and 80 proxy SNPs are genome variants affecting the expression, splicing, epigenetic and amino acid conformation of the 34 genes which enrich the organic anion transport and secondary carrier transporter pathways. In conclusion, the present study showed that sex hormone polymorphisms proven by GWAS are associated with endometriosis risk and involved in the molecular pathophysiology of the disease due to their functionality.
Chalcogen Bond as a Factor Stabilizing Ligand Conformation in the Binding Pocket of Carbonic Anhydrase IX Receptor Mimic
Authors: Wojtkowiak Kamil , Michalczyk Mariusz , Zierkiewicz Wiktor , Jezierska Aneta , Panek Jarosław J.
Published: November 2022

It is postulated that the overexpression of Carbonic Anhydrase isozyme IX in some cancers contributes to the acidification of the extracellular matrix. It was proved that this promotes the growth and metastasis of the tumor. These observations have made Carbonic Anhydrase IX an attractive drug target. In the light of the findings and importance of the glycoprotein in the cancer treatment, we have employed quantum–chemical approaches to study non-covalent interactions in the binding pocket. As a ligand, the acetazolamide (AZM) molecule was chosen, being known as a potential inhibitor exhibiting anticancer properties. First-Principles Molecular Dynamics was performed to study the chalcogen and other non-covalent interactions in the AZM ligand and its complexes with amino acids forming the binding site. Based on Density Functional Theory (DFT) and post-Hartree–Fock methods, the metric and electronic structure parameters were described. The Non-Covalent Interaction (NCI) index and Atoms in Molecules (AIM) methods were applied for qualitative/quantitative analyses of the non-covalent interactions. Finally, the AZM–binding pocket interaction energy decomposition was carried out. Chalcogen bonding in the AZM molecule is an important factor stabilizing the preferred conformation. Free energy mapping via metadynamics and Path Integral molecular dynamics confirmed the significance of the chalcogen bond in structuring the conformational flexibility of the systems. The developed models are useful in the design of new inhibitors with desired pharmacological properties.
Sn(IV)-Porphyrin-Based Nanostructures Featuring Pd(II)-Mediated Supramolecular Arrays and Their Photocatalytic Degradation of Acid Orange 7 Dye
Authors: Shee Nirmal Kumar , Kim Hee-Joon
Published: November 2022

Two robust Sn(IV)-porphyrin-based supramolecular arrays (1 and 2) were synthesized via the reaction of trans-Pd(PhCN)2Cl2 with two precursor building blocks (SnP1 and SnP2). The structural patterns in these architectures vary from 2D to 3D depending on the axial ligation of Sn(IV)-porphyrin units. A discrete 2D tetrameric supramolecule (1) was constructed by coordination of {(trans-dihydroxo)[5,10-bis(4-pyridyl)-15,20-bis(phenyl) porphyrinato]}tin(IV) (SnP1) with trans-PdCl2 units. In contrast, the coordination between the {(trans-diisonicotinato)[5,10-bis(4-pyridyl)-15,20-bis(phenyl)porphyrinato]}tin(IV) (SnP2) and trans-PdCl2 units formed a divergent 3D array (2). Axial ligation of the Sn(IV)-porphyrin building blocks not only alters the supramolecular arrays but also significantly modifies the nanostructures, including porosity, surface area, stability, and morphology. These structural changes consequently affected the photocatalytic degradation efficiency under visible-light irradiation towards acid orange 7 (AO) dye in an aqueous solution. The degradation efficiency of the AO dye in the aqueous solution was observed to be between 86% to 91% within 90 min by these photocatalysts.
Expression of Antimicrobic Peptide Piscidin1 in Gills Mast Cells of Giant Mudskipper Periophthalmodon schlosseri (Pallas, 1770)
Authors: Alesci Alessio , Capillo Gioele , Mokhtar Doaa M. , Fumia Angelo , D’Angelo Roberta , Lo Cascio Patrizia , Albano Marco , Guerrera Maria Cristina , Sayed Ramy K. A. , Spanò Nunziacarla , Pergolizzi Simona , Lauriano Eugenia Rita
Published: November 2022

The amphibious teleost Giant mudskipper (Periophthalmodon schlosseri, Pallas 1770) inhabit muddy plains and Asian mangrove forests. It spends more than 90% of its life outside of the water, using its skin, gills, and buccal-pharyngeal cavity mucosa to breathe in oxygen from the surrounding air. All vertebrates have been found to have mast cells (MCs), which are part of the innate immune system. These cells are mostly found in the mucous membranes of the organs that come in contact with the outside environment. According to their morphology, MCs have distinctive cytoplasmic granules that are released during the degranulation process. Additionally, these cells have antimicrobial peptides (AMPs) that fight a variety of infections. Piscidins, hepcidins, defensins, cathelicidins, and histonic peptides are examples of fish AMPs. Confocal microscopy was used in this study to assess Piscidin1 expression in Giant Mudskipper branchial MCs. Our results demonstrated the presence of MCs in the gills is highly positive for Piscidin1. Additionally, colocalized MCs labeled with TLR2/5-HT and Piscidin1/5-HT supported our data. The expression of Piscidin1 in giant mudskipper MCs highlights the involvement of this peptide in the orchestration of teleost immunity, advancing the knowledge of the defense system of this fish.
A Vaccine of SARS-CoV-2 S Protein RBD Induces Protective Immunity
Authors: Qu Qiaoqiao , Hao Pengfei , Xu Wang , Li Letian , Jiang Yuhang , Xu Zhiqiang , Chen Jing , Gao Zihan , Pang Zhaoxia , Jin Ningyi , Li Chang
Published: November 2022

The pandemic of the novel severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has posed great threat to the world in many aspects. There is an urgent requirement for an effective preventive vaccine. The receptor binding domain (RBD), located on the spike (S) gene, is responsible for binding to the angiotensin-converting enzyme 2 (ACE2) receptor of host cells. The RBD protein is an effective and safe antigen candidate. The six-helix bundle (6HB) “molecular clamp” is a novel thermally-stable trimerization domain derived from a human immunodeficiency virus (HIV) gp41 protein segment. We selected the baculovirus system to fuse and express the RBD protein and 6HB for imitating the natural trimeric structure of RBD, named RBD-6HB. Recombinant RBD-6HB was successfully obtained from the cell culture supernatant and purified to high homogeneity. The purity of the final protein preparation was more than 97%. The results showed that the protein was identified as a homogeneous polymer. Further studies showed that the RBD-6HB protein combined with AL/CpG adjuvant could stimulate animals to produce sustained high-level antibodies and establish an effective protective barrier to protect mice from challenges. Our findings highlight the importance of trimerized SARS-CoV-2 S protein RBD in designing SARS-CoV-2 vaccines and provide a rationale for developing a protective vaccine through the induction of antibodies against the RBD domain.
Gut Microbiota Host–Gene Interaction
Authors: Cuomo Paola , Capparelli Rosanna , Alifano Marco , Iannelli Antonio , Iannelli Domenico
Published: November 2022

Studies carried out in the last ten years have shown that the metabolites made up from the gut microbiota are essential for multiple functions, such as the correct development of the immune system of newborns, interception of pathogens, and nutritional enrichment of the diet. Therefore, it is not surprising that alteration of the gut microbiota is the starting point of gastrointestinal infection, obesity, type 2 diabetes, inflammatory bowel disease, colorectal cancer, and lung cancer. Diet changes and antibiotics are the major factors damaging the gut microbiota. Early exposure of the newborns to antibiotics may prevent their correct development of the immune system, exposing them to pathogen infections, allergies, and chronic inflammatory diseases. We already know much on how host genes, microbiota, and the environment interact, owing to experiments in several model animals, especially in mice; advances in molecular technology; microbiota transplantation; and comparative metagenomic analysis. However, much more remains to be known. Longitudinal studies on patients undergoing to therapy, along with the identification of bacteria prevalent in responding patients may provide valuable data for improving therapies.
Coordination Chemistry of Phosphate Groups in Systems Including Copper(II) Ions, Phosphoethanolamine and Pyrimidine Nucleotides
Authors: Gabryel-Skrodzka Malwina , Nowak Martyna , Teubert Anna , Jastrzab Renata
Published: November 2022

The activity of phosphate groups of phosphoethanolamine and pyrimidine nucleotides (thymidine 5-monophosphate, cytidine 5-monophosphate and uridine 5’monophosphate) in the process of complexation metal ions in aqueous solution was studied. Using the potentiometric method with computer calculation of the data and spectroscopic methods such as UV-Vis, EPR, 13C and 31P NMR as well as FT-IR, the overall stability constants of the complexes as well as coordination modes were obtained. At lower pH, copper(II) ions are complexed only by phosphate groups, whereas the endocyclic nitrogen atom of nucleotides has been identified as a negative center interacting with the -NH3+ groups of phosphoethanolamine.
Coordination of AMPK and YAP by Spatholobi Caulis and Procyanidin B2 Provides Antioxidant Effects In Vitro and In Vivo
Authors: Bae Su-Jin , Bak Seon Been , Kim Young Woo
Published: November 2022

The liver is vulnerable to oxidative attacks from heavy metals, such as iron, as well as some drugs, including acetaminophen. It has been shown that enhanced oxidative stress in the liver leads to excessive ROS production and mitochondrial dysfunction, resulting in organ injury. The beneficial effects of Spatholobi Caulis (SC), a natural herbal medicine, include treating ischemic stroke, inhibiting tumor cell invasion, pro-angiogenic activities, and anti-inflammatory properties. Scientific studies on its effects against hepatotoxic reagents (e.g., iron and acetaminophen), as well as their underlying mechanisms, are insufficient. This study examined the antioxidant effects and mechanisms of SC in vitro and in vivo. In cells, the proinflammatory mediator, arachidonic acid (AA), plus iron, significantly induced an increase in ROS generation, the damage in mitochondrial membrane potential, and the resulting apoptosis, which were markedly blocked by SC. More importantly, SC affected the activation of AMP-activated protein kinase (AMPK)-related proteins, which were vital to regulating oxidative stress in cells. In addition, SC mediated the expression of Yes-associated protein (YAP)-related proteins. Among the active compounds in SC, the procyanidin B2, but not liquiritigenin, daidzein, and genistein, significantly inhibited the cytotoxicity induced by AA + iron, and activated the LKB1-AMPK pathway. In mice, the oral administration of SC alleviated the elevations of ALT and histological changes by the acetaminophen-induced liver injury. These results reveal the potential of SC and a key bioactive component, procyanidin B2, as antioxidant candidates for hepatoprotection.
Proteomes of Residual Tumors in Curcumin-Treated Rats Reveal Changes in Microenvironment/Malignant Cell Crosstalk in a Highly Invasive Model of Mesothelioma
Authors: Pouliquen Daniel L. , Malloci Marine , Boissard Alice , Henry Cécile , Guette Catherine
Published: November 2022

Curcumin exhibits both immunomodulatory properties and anticarcinogenic effects which have been investigated in different experimental tumor models and cancer types. Its interactions with multiple signaling pathways have been documented through proteomic studies on malignant cells in culture; however, in vivo approaches are scarce. In this study, we used a rat model of highly invasive peritoneal mesothelioma to analyze the residual tumor proteomes of curcumin-treated rats in comparison with untreated tumor-bearing rats (G1) and provide insights into the modifications in the tumor microenvironment/malignant cell crosstalk. The cross-comparing analyses of the histological sections of residual tumors from two groups of rats given curcumin twice on days 21 and 26 after the tumor challenge (G2) or four times on days 7, 9, 11 and 14 (G3), in comparison with G1, identified a common increase in caveolin-1 which linked with significant abundance changes affecting 115 other proteins. The comparison of G3 vs. G2 revealed additional features for 65 main proteins, including an increase in histidine-rich glycoprotein and highly significant abundance changes for 22 other proteins regulating the tumor microenvironment, linked with the presence of numerous activated T cells. These results highlight new features in the multiple actions of curcumin on tumor microenvironment components and cancer cell invasiveness.
Integrative Metallomics Studies of Toxic Metal(loid) Substances at the Blood Plasma–Red Blood Cell–Organ/Tumor Nexus
Authors: Doroudian Maryam , Gailer Jürgen
Published: November 2022

Globally, an estimated 9 million deaths per year are caused by human exposure to environmental pollutants, including toxic metal(loid) species. Since pollution is underestimated in calculations of the global burden of disease, the actual number of pollution-related deaths per year is likely to be substantially greater. Conversely, anticancer metallodrugs are deliberately administered to cancer patients, but their often dose-limiting severe adverse side-effects necessitate the urgent development of more effective metallodrugs that offer fewer off-target effects. What these seemingly unrelated events have in common is our limited understanding of what happens when each of these toxic metal(loid) substances enter the human bloodstream. However, the bioinorganic chemistry that unfolds at the plasma/red blood cell interface is directly implicated in mediating organ/tumor damage and, therefore, is of immediate toxicological and pharmacological relevance. This perspective will provide a brief synopsis of the bioinorganic chemistry of AsIII, Cd2+, Hg2+, CH3Hg+ and the anticancer metallodrug cisplatin in the bloodstream. Probing these processes at near-physiological conditions and integrating the results with biochemical events within organs and/or tumors has the potential to causally link chronic human exposure to toxic metal(loid) species with disease etiology and to translate more novel anticancer metal complexes to clinical studies, which will significantly improve human health in the 21st century.
The Effect of Short Chain Carboxylic Acids as Additives on the Crystallization of Methylammonium Lead Triiodide (MAPI)
Authors: Dionigi Chiara , Goudjil Meriem , Ruani Giampiero , Bindi Luca
Published: November 2022

Due to their exceptional properties, the study of hybrid perovskite (HyP) structures and applications dominate current photovoltaic prospects. Methylammonium lead tri-iodide perovskite (MAPI) is the model compound of the HyP class of materials that, in a few years, achieved, in photovoltaics, a power conversion efficiency of 25%. The attention on HyP has recently moved to large single crystals as emerging candidates for photovoltaic application because of their improved stability and optoelectronic properties compared to polycrystalline films. To control the quality and symmetry of the large MAPI single crystals, we proposed an original method that consisted of adding short-chain carboxylic acids to the inverse temperature crystallization (ICT) of MAPI in γ-butyrolactone (GBL). The crystals were characterized by single-crystal X-ray diffraction (SC-XRD), X-ray powder diffraction (XRPD) and Raman spectroscopy. Based on SC-XRD analysis, MAPI crystals grown using acetic and trifluoroacetic acids adopt a tetragonal symmetry “I4cm”. MAPI grown in the presence of formic acid turned out to crystallize in the orthorhombic “Fmmm” space group demonstrating the acid’s effect on the crystallization of MAPI.
Combined Methylprednisolone Pulse Therapy plus Rituximab for Treating a Rare Juvenile Steroid-Resistant Nephrotic Syndrome with Cerebral Venous Sinus Thrombosis: A Case Report
Authors: Sakr Hader I. , Edrees Burhan , Taher Hussein Omar , Miliany Tuleen Talal , Gazzaz Raneem Yasser , AlRuwaithi Asma Omar , Alamer Mohammed Fouad , Metawee Mostafa E.
Published: November 2022

Background: Cerebral venous sinus thrombosis (CVST) secondary to nephrotic syndrome (NS) is rarely reported. Additionally, treating steroid-sensitive nephrotic syndrome (SSNS) that changes to steroid resistance (SRNS) is difficult, with many relapses and side effects. Case presentation: A 32-month-old SSNS male child turned into SRNS and developed cerebral venous sinus thrombosis (CVST), a rare complication of NS. As a result of the administration of combined pulse methylprednisolone and IV Rituximab (RTX) therapy, the patient showed marked improvement, the results of urine analysis were remarkably improved, and the child started to respond to treatment. Conclusions: Successful treatment of a rare case of juvenile SSNS behaving as SRNS with the development of CVST could be established using combined steroid pulse therapy, Enoxaparin, and the B lymphocytes monoclonal antibodies RTX.
Susac Syndrome: Description of a Single-Centre Case Series
Authors: Beça Sara , Elera-Fitzcarrald Claudia , Saiz Albert , Llufriu Sara , Cid Maria C. , Sanchez-Dalmau Bernardo , Adan Alfredo , Espinosa Gerard
Published: November 2022

This study describes the clinical characteristics, diagnostic results, treatment regimens, and clinical course of a cohort of patients with Susac syndrome (SS). It is a retrospective observational study of all patients with the diagnosis of SS evaluated at the Hospital Clinic (Barcelona, Spain) between March 2006 and November 2020. Nine patients were diagnosed with SS. The median time from the onset of the symptoms to diagnosis was five months (IQR 9.0), and the median follow-up time was 44 months (IQR 63.5). There was no clear predominance of sex, and mean age of symptoms onset was 36 years (range 19–59). Six patients (67%) presented with incomplete classical clinical triad, but this eventually developed in six patients during the disease course. Encephalopathy, focal neurological signs, visual disturbances, and hearing loss were the most frequent manifestations. Brain magnetic resonance imaging showed callosal lesions in all patients. Most were in remission within two years. Only four patients met the proposed criteria for definite SS. When SS is suspected, a detailed diagnostic workup should be performed and repeated over time to identify the clinical manifestations that will lead to a definite diagnosis.
Psychological and Cognitive Effects of Long COVID: A Narrative Review Focusing on the Assessment and Rehabilitative Approach
Authors: De Luca Rosaria , Bonanno Mirjam , Calabrò Rocco Salvatore
Published: November 2022

Long COVID is a clinical syndrome characterized by profound fatigue, neurocognitive difficulties, muscle pain, weakness, and depression, lasting beyond the 3–12 weeks following infection with SARS-CoV-2. Among the symptoms, neurocognitive and psychiatric sequelae, including attention and memory alterations, as well as anxiety and depression symptoms, have become major targets of current healthcare providers given the significant public health impact. In this context, assessment tools play a crucial role in the early screening of cognitive alterations due to Long COVID. Among others, the general cognitive assessment tools, such as the Montreal Cognitive assessment, and more specific ones, including the State Trait Inventory of Cognitive Fatigue and the Digit Span, may be of help in investigating the main neurocognitive alterations. Moreover, appropriate neurorehabilitative programs using specific methods and techniques (conventional and/or advanced) through a multidisciplinary team are required to treat COVID-19-related cognitive and behavioral abnormalities. In this narrative review, we sought to describe the main neurocognitive and psychiatric symptoms as well as to provide some clinical advice for the assessment and treatment of Long COVID.
Early Changes in Androgen Levels in Individuals with Spinal Cord Injury: A Longitudinal SwiSCI Study
Authors: Itodo Oche Adam , Raguindin Peter Francis , Wöllner Jens , Eriks-Hoogland Inge , Jordan Xavier , Hund-Georgiadis Margret , Muka Taulant , Pannek Jürgen , Stoyanov Jivko , Glisic Marija
Published: November 2022

We aimed to explore longitudinal changes in androgen levels in individuals with spinal cord injury (SCI) within initial inpatient rehabilitation stay and identify clinical/injury characteristics associated with hormone levels. Linear regression analysis was applied to explore the association between personal/injury characteristics and androgen hormones (total testosterone, free testosterone, sex hormone-binding globulin (SHBG), dehydroepiandrosterone (DHEA), and dehydroepiandrosterone sulfate (DHEA-S)) at admission to rehabilitation. Longitudinal changes in androgen levels were studied using linear mixed models. Analyses were stratified by sex and by injury type. We included 70 men and 16 women with SCI. We observed a non-linear association between age, time since injury, and androgens at baseline. At admission to initial rehabilitation, mature serum SHBG (full-length, protein form which lacks the N-terminal signaling peptide) was higher, while DHEA and DHEA-S were lower among opioid users vs. non-users. Serum levels of total testosterone and DHEA-S increased over rehabilitation period [β 3.96 (95%CI 1.37, 6.56), p = 0.003] and [β 1.77 (95%CI 0.73, 2.81), p = 0.01], respectively. We observed no significant changes in other androgens. Restricting our analysis to men with traumatic injury did not materially change our findings. During first inpatient rehabilitation over a median follow up of 5.6 months, we observed an increase in total testosterone and DHEA-S in men with SCI. Future studies need to explore whether these hormonal changes influence neurological and functional recovery as well as metabolic parameters during initial rehabilitation stay.
Clinical Outcomes and Prevalence of Sarcopenia in Patients with Moderate to Severe COVID-19
Authors: Yamamoto Shuhei , Sakai Yasunari , Matsumori Keiji , Osawa Ryuji , Ito Shun , Tsukakoshi Daichi , Ohno Tomoki , Ohta Hiroaki , Ichiyama Takashi , Komatsu Masamichi , Wada Yosuke , Hanaoka Masayuki , Ikegami Shota , Horiuchi Hiroshi
Published: November 2022

Background: The purpose of this study was to investigate the effectiveness and clinical outcomes of inpatient rehabilitation for patients with severe COVID-19 in Japan. Methods: Patients with severe COVID-19 who underwent rehabilitation during hospitalization were included. The Medical Research Council (MRC) score and short physical performance battery (SPPB), such as physical function assessment and the intensive care unit (ICU) mobility scale, the functional status score for the ICU, and Barthel index as activities of daily living (ADLs) were evaluated at admission and discharge or transfer from the hospital. The correlation between SPPB at discharge and each factor at admission were also analyzed. Furthermore, the prevalence of sarcopenia was evaluated by defining SPPB of <9 points at discharge as sarcopenia. Results: The median age of the total of 23 patients was 59 years (interquartile range (IQR): 47–67), 73.9% were male, and the median PaO2/FiO2 at admission was 172.0 (IQR: 123.0–209.0). All physical function and ADL parameters were significantly improved from the time of admission to discharge (p = 0.014 for the MRC score and p < 0.001 for all others). Moreover, SPPB at discharge significantly correlated with WBC (Spearman’s rho = −0.473, p = 0.041), C-reactive protein (Spearman’s rho = −0.468, p = 0.044), and exhibited a significant trend with PaO2/FiO2 (Spearman’s rho = 0.429, p = 0.067) and age (Spearman’s rho = 0.409, p = 0.083). Although the median Barthel index at discharge was 90 points, 47% of patients had sarcopenia as defined by an SPPB of <9 points. Conclusions: Early rehabilitation for patients with severe COVID-19 improved physical function and ADLs during hospitalization. However, 47% of patients had the same level of sarcopenia at discharge.
COVID-19 Fear and Anxiety among Patients with Chronic Heart Failure: A Cross Sectional Study
Authors: Alkouri Osama , Khader Yousef , Hweidi Issa M. , Gharaibeh Muntaha K. , Jarrah Mohamad , Hamdan Khaldoun M. , Al Marzouqi Amina , Khamaiseh Khaldoun
Published: November 2022

Although the current management of COVID-19 is mainly focused on efficacious vaccine and infection control, the most common psychological reactions (such as fear and anxiety) associated with the COVID-19 pandemic have not been investigated and even neglected in patients with heart failure who are at greater risk for morbidity and mortality. We assessed COVID-19 related fear and anxiety among patients with heart failure and determined their associated factors. A cross sectional survey was conducted among 300 consecutive patients with heart failure during the period of March 2021–June 2021. Almost 50.7% of patients had fear of COVID-19 and 36.3% had coronavirus anxiety. Age > 55 was significantly associated with increased odds of fear (OR = 2.6) and anxiety (OR = 4.3). Patients with angina were more likely to have fear (OR = 3.0) and anxiety (OR = 2.2) and patients with chronic lung disease were more likely to have fear (OR = 3.0) and anxiety (OR = 3.3). Increased age, having angina, and having chronic lung disease were associated with increased odds of fear of COVID-19 and coronavirus anxiety. Psychological support needs to be integrated in patient care with special attention to physiological risk factors that are associated with COVID-19 comorbidities.
Use of Maximum Tongue Pressure Values to Examine the Presence of Dysphagia after Extubation and Prevent Aspiration Pneumonia in Elderly Emergency Patients
Authors: Ichibayashi Ryo , Sekiya Hideki , Kaneko Kosuke , Honda Mitsuru
Published: November 2022

Background: Tongue pressure values in patients with dysphagia are reported to be significantly lower than those in healthy controls. The aim of this study was to measure the maximum tongue pressure (MTP) values after extubation in order to assess the presence of post-extubation dysphagia for the safe initiation of oral intake in elderly patients. Methods: Data from 90 patients who were extubated after mechanical ventilation under tracheal intubation were collected retrospectively. The patients were divided into two groups as follows: normal group (those who did not develop aspiration pneumonia after extubation; median age 62 years) and aspiration group (those who developed aspiration during the evaluation period; median age 75 years). The MTP values were measured at 6 h, 24 h, 3 days, and 7 days after extubation. Results: The values were significantly increased 24 h after extubation in the normal group (p < 0.05). Alternatively, no increase was observed even after 1 week of extubation in the aspiration group, and the values were significantly lower than those in the normal group. The cutoff values at 6 and 24 h after extubation, which were measured using the receiver operator characteristic (ROC) curve, were 17.8 and 23.2 kpa, respectively; furthermore, the results of these assessments were strongly related to the development of aspiration 6 h after extubation (χ2-value: 6.125; p = 0.0133). Conclusions: The presence of post-extubation dysphagia in patients who are intubated for ≥24 h can be predicted based on age and the MTP values at 6 h after extubation.
TET2 Mutation May Be More Valuable in Predicting Thrombosis in ET Patients Compared to PV Patients: A Preliminary Report
Authors: Wang Ziqing , Liu Weiyi , Wang Dehao , Yang Erpeng , Li Yujin , Li Yumeng , Sun Yan , Wang Mingjing , Lv Yan , Hu Xiaomei
Published: November 2022

Thrombosis is a common complication of myeloproliferative neoplasm (MPN), and it is a major cause of disability and death. With the development of next-generation gene-sequencing technology, the relationship between non-driver mutations and thrombotic risk factors has also attracted considerable attention. To analyze the risk factors of thrombosis in patients with essential thrombocythemia (ET) and polycythemia vera (PV), we retrospectively analyzed the clinical data of 125 MPN patients (75 ET and 50 PV) and performed a multivariate analysis of the risk factors of thrombosis using a Cox proportional risk model. Among the 125 patients, 35 (28.0%) had thrombotic events, and the incidence of thrombotic events was 21.3% and 38.0% in ET and PV patients, respectively. In ET patients, the multivariate analysis showed that a TET2 mutation and history of remote thrombosis were independent risk factors for thrombosis in ET patients, with an HR of 4.1 (95% CI: 1.40–12.01; p = 0.01) for TET2 mutation and 6.89 (95% CI: 1.45–32.68; p = 0.015) for a history of remote thrombosis. In PV patients, the multivariate analysis presented the neutrophil-to-lymphocyte ratio (NLR) (HR: 4.77, 95% CI: 1.33–17.16; p = 0.017) and a history of remote thrombosis (HR: 1.67, 95% CI: 1.03–1.32; p = 0.014) as independent risk factors for thrombosis, with no significant change in the risk of thrombosis in patients with TET2 mutations. A further analysis of the clinical characteristics and coagulation occurring in ET patients with a TET2 mutation revealed that the values of age and D-dimer were significantly higher and antithrombin III was significantly lower in TET2-mutated ET patients compared to TET2-unmutated patients. In summary, TET2 mutation may be more valuable in predicting thrombosis in ET patients than in PV patients. ET patients with a TET2 mutation are older and present differences in coagulation compared to TET2-unmutated patients.
Towards Low-Power Machine Learning Architectures Inspired by Brain Neuromodulatory Signalling
Authors: Barton Taylor , Yu Hao , Rogers Kyle , Fulda Nancy , Chiang Shiuh-hua Wood , Yorgason Jordan , Warnick Karl F.
Published: November 2022

We present a transfer learning method inspired by modulatory neurotransmitter mechanisms in biological brains and explore applications for neuromorphic hardware. In this method, the pre-trained weights of an artificial neural network are held constant and a new, similar task is learned by manipulating the firing sensitivity of each neuron via a supplemental bias input. We refer to this as neuromodulatory tuning (NT). We demonstrate empirically that neuromodulatory tuning produces results comparable with traditional fine-tuning (TFT) methods in the domain of image recognition in both feed-forward deep learning and spiking neural network architectures. In our tests, NT reduced the number of parameters to be trained by four orders of magnitude as compared with traditional fine-tuning methods. We further demonstrate that neuromodulatory tuning can be implemented in analog hardware as a current source with a variable supply voltage. Our analog neuron design implements the leaky integrate-and-fire model with three bi-directional binary-scaled current sources comprising the synapse. Signals approximating modulatory neurotransmitter mechanisms are applied via adjustable power domains associated with each synapse. We validate the feasibility of the circuit design using high-fidelity simulation tools and propose an efficient implementation of neuromodulatory tuning using integrated analog circuits that consume significantly less power than digital hardware (GPU/CPU).
Numerical Investigation of Vortex-Induced Vibration of a Circular Cylinder with Control Rods and Its Multi-Objective Optimization
Authors: Hu Zhiyang , Chen Jiaqi , Qu Sen , Wang Xikun
Published: November 2022

The flow past a 2D circular cylinder with control rods is numerically simulated in the present paper. The suppression effects of the control rods on the vortex-induced vibration (VIV) characteristics of the cylinder are investigated using the overlapping grid method and user defined function. By setting the cylinder’s vibration amplitude and drag force coefficient as the expected objective function, a multi-objective optimization is carried out to enhance the suppression performance at different reduced velocities, for which the rod-to-cylinder diameter ratio, gap ratio, incidence angle and reduced velocity are used as design variables. The regression expressions, which are obtained by Box–Behnken design (BBD), are employed in nondominated sorting genetic algorithm II (NSGA-II) to minimize the objectives. It is found that both the optimized vibration amplitude and drag force coefficient exhibit a monotonically decreasing linear trend with the reduced velocity, and as the reduced velocity decreases, the range of the optimized points gradually decreases. Subsequently, the optimized cases are verified by CFD simulations and compared with the original cases. For the samples at the reduced velocity of 4, 5, and 6, the vibration amplitude after optimization decreases by 15.1%, 24.8%, and 21.6%, respectively.
Estimation of Marine Macroalgal Biomass Using a Coverage Analysis
Authors: Jung Seung Wook , Choi Chang Geun
Published: November 2022

This study was conducted to assess the feasibility of biomass estimation by non-destructive sampling, determine whether the results derived from various types of marine macroalgae are reliable, and a newly proposed method. A quantitative survey was conducted on marine macroalgae communities distributed in the subtidal zone in 67 coastal regions in Korea. Regression analyses were conducted on 11,642 fresh weight datasets covering of 135 species of marine macroalgae. The linear function was FW = 17.721C (adj r2 = 0.745, p < 0.001) and the power function was FW = 4.48C1.251 (adj r2 = 0.891, p < 0.001). Our analysis accounted for the fact that there were three vertically distributed layers of a marine macroalgal assemblages with various shapes (i.e., the Ecklonia complex, the Sargassum and Undaria complex, and the understory complex). For the Ecklonia complex, the linear function was FW = 27.360C (adj r2 = 0.886, p < 0.001) and the power function was FW = 9.626C1.223 (adj r2 = 0.909, p < 0.001). For the Sargassum and Undaria complex, the linear function was FW = 18.389C (adj r2 = 0.916, p < 0.001) and the power function was FW = 6.567C1.255 (adj r2 = 0.942, p < 0.001). For the understory complex, the linear function was FW = 10.419C (adj r2 = 0.737, p < 0.001) and the power function was FW = 4.377C1.182 (adj r2 = 0.871, p < 0.001). Our findings demonstrated that the proposed method can accurately estimate the primary productivity of a wide range of coastal ecosystems based on remote sensing and non-destructive surveys of small-scale marine macroalgal communities.
A Molecular Dynamics Approach to Identify the Marine Traffic Complexity in a Waterway
Authors: Liu Zihao , Wu Zhaolin , Zheng Zhongyi , Yu Xianda
Published: November 2022

With the rapid development of the shipping industry in recent years, the increasing volume of ship traffic makes marine traffic much busier and more crowded, especially in the waterway off the coast. This leads to the increment of the complexity level of marine traffic and poses more threats to marine traffic safety. In order to study marine traffic safety under the conditions of increasing complexity, this article proposed a marine traffic complexity model based on the method in molecular dynamics. The model converted ship traffic to a particle system and identified the traffic complexity by analyzing the radial distribution of dynamic and spatial parameters of ships in a Euclid plane. The effectiveness of the proposed model had been validated by the case studies in the waters of Bohai Strait with real AIS (Automatic Identification System) data and simulated data. The results show that the proposed model can evaluate the marine traffic complexity more sufficiently and accurately. The proposed model is helpful for marine surveillance operators to monitor and organize marine traffic under complex situations so as to improve marine traffic safety.
Joint Planning of Fleet Deployment, Ship Refueling, and Speed Optimization for Dual-Fuel Ships Considering Methane Slip
Authors: Wu Yiwei , Huang Yadan , Wang H. , Zhen Lu
Published: November 2022

Reducing air pollution and greenhouse gas emissions has become one of the primary tasks for the shipping industry over the past few years. Among alternative marine fuels, liquefied natural gas (LNG) is regarded as one of the most popular alternative marine fuels because it is one of the cleanest fossil marine fuels. Therefore, a practical way to implement green shipping is to deploy dual-fuel ships that can burn conventional fuel oil and LNG on various ship routes. However, a severe problem faced by dual-fuel ships is methane slip from the engines of ships. Therefore, this study formulates a nonlinear mixed-integer programming model for an integrated optimization problem of fleet deployment, ship refueling, and speed optimization for dual-fuel ships, with the consideration of fuel consumption of both main and auxiliary engines, ship carbon emissions, availability of LNG at different ports of call, and methane slip from the main engines of ships. Several linearization techniques are applied to transform the nonlinear model into a linear model that can be directly solved by off-the-shelf solvers. A large number of computational experiments are carried out to assess the model performance. The proposed linearized model can be solved quickly by Gurobi, namely shorter than 0.12 s, which implies the possibility of applying the proposed model to practical problems to help decision-makers of shipping liners make operational decisions. In addition, sensitivity analyses with essential parameters, such as the price difference between the conventional fuel oil and LNG, carbon tax, and methane slip amount, are conducted to investigate the influences of these factors on operational decisions to seek managerial insights. For example, even under the existing strictest carbon tax policy, shipping liners do not need to deploy more ships and slow steaming to reduce the total weekly cost.
Genetic Diversity, Population Structure and Mating Type Distribution of Setosphaeria turcica on Corn in Midwestern China
Authors: Cui Linkai , Zhao Linxi , Wang Bin , Han Zanping , Hu Yanhong
Published: November 2022

Setosphaeria turcica is the causal agent of northern corn leaf blight (NCLB), which is a destructive foliar disease of corn around the world. To date, limited information is available on the genetic diversity, population structure, and mating type distribution of the pathogen in the mid-west of China. In this study, based on single nucleotide polymorphism (SNP) markers and mating type-specific primers, we characterized 117 S. turcica isolates collected from Henan, Hebei, Shanxi, and Shaanxi provinces in China. Based on the developed 33 SNP markers, all isolates can be categorized into two genetic groups. Each group consisted of isolates from all four provinces. The Nei’s gene diversity of four populations ranged from 0.328 to 0.419 with a mean of 0.391. The analysis of fixation index (Fst) and gene flow (Nm) suggested that low genetic differentiation and high gene flow existed among four geographic populations. The analysis of molecular variance (AMOVA) demonstrated that the principal molecular variance existed within populations (98%) rather than among populations (2%). The analysis of mating type loci revealed that two mating types (MAT1-1 and MAT1-2) were basically in equilibrium in all four populations. These findings advance our understanding of the genetic diversity, population structure and mating type distribution of S. turcica on corn in the mid-west of China and will aid in developing efficient strategies to control NCLB.