bluuebunny/crossref_metadata_2025 huggingface dataset:
Clinical risk factors of carbohydrate antigen-125, cytokeratin fragment 19, and neuron-specific enolase in liver metastases from elderly lung cancer patients
Authors: Cheng Tao , Chen Jun , Ying Ping , Wei Hong , Shu Huiye , Kang Min , Zou Jie , Ling Qian , Liao Xulin , Wang Yixin , Shao Yi
Published: September 2022

Objective: Lung cancer is a common malignant tumor characterized by challenging detection and lack of specificity in clinical manifestations. To investigate the correlation of tumor markers in the serum with liver metastasis and prognosis of lung cancer.

Methods: A total of 3,046 elderly lung cancer patients were retrospectively studied between September 1999 and July 2020. Divided into liver metastasis group and non-liver metastasis group. We compared a series of serum biomarkers between the two groups of elderly patients to predict the prognosis in patients with lung cancer by fluorescence in situ hybridization (FISH), advanced flow cytometry (FCM) and multi tumor marker protein chip, including tumor markers in the serum included alkaline phosphatase (ALP), serum calcium, hemoglobin (HB), alpha-fetoprotein (AFP), carcinoembryonic antigen (CEA), neuron-specific enolase (NSE), cytokeratin fragment 19 (Cyfra21-1), carbohydrate antigen-125 (CA-125), carbohydrate antigen-153 (CA-153), carbohydrate antigen-199 (CA-199), and free prostate specific antigen (free PSA). We used binary logistic regression analysis to determine risk factors, and used receiver operating curve (ROC) analysis to evaluate the diagnostic value of liver metastases in elderly patients with lung cancer.

Results: The proportion of lung cancer in the liver metastasis group was higher than that observed in the non-liver metastases group. The expression levels of CA-125, Cyfra21-1, and NSE in the liver metastasis group of lung cancer were significantly higher than those reported in the non-liver metastases group (p < 0.05). ROC curve analysis shows that the area under the curve of CA-125, Cyfra21-1, and NSE are 0.614, 0.616 and 0.608, respectively. The sensitivity and specificity of CA-125 were 45.70% and 76.20%, the sensitivity and specificity of Cyfra21-1 were 60.10% and 57.10%, and the sensitivity and specificity of NSE were 44.10% and 75.00%, respectively.

Conclusion: High levels of CA-125, Cyfra21-1, and NSE in the serum may be associated with liver metastasis in elderly patients with lung cancer. CA-125 and NSE are factors influencing the prognosis of elderly patients with liver metastasis of lung cancer.
Deciphering the expression patterns of homologous recombination-related lncRNAs identifies new molecular subtypes and emerging therapeutic opportunities in epithelial ovarian cancer
Authors: Hua Tian , Zhang Xiao-Chong , Wang Wei , Tian Yun-Jie , Chen Shu-Bo
Published: September 2022

Epithelial ovarian cancer (EOC) is the leading killer among women with gynecologic malignancies. Homologous recombination deficiency (HRD) has attracted increasing attention due to its significant implication in the prediction of prognosis and response to treatments. In addition to the germline and somatic mutations of homologous recombination (HR) repair genes, to widely and deeply understand the molecular characteristics of HRD, we sought to screen the long non-coding RNAs (lncRNAs) with regard to HR repair genes and to establish a prognostic risk model for EOC. Herein, we retrieved the transcriptome data from the Genotype-Tissue Expression Project (GTEx) and The Cancer Genome Atlas (TCGA) databases. HR-related lncRNAs (HRRlncRNAs) associated with prognosis were identified by co-expression and univariate Cox regression analyses. The least absolute shrinkage and selection operator (LASSO) and multivariate stepwise Cox regression were performed to construct an HRRlncRNA risk model containing AC138904.1, AP001001.1, AL603832.1, AC138932.1, and AC040169.1. Next, Kaplan−Meier analysis, time-dependent receiver operating characteristics (ROC), nomogram, calibration, and DCA curves were made to verify and evaluate the model. Gene set enrichment analysis (GSEA), immune analysis, and prediction of the half-maximal inhibitory concentration (IC50) in the risk groups were also analyzed. The calibration plots showed a good concordance with the prognosis prediction. ROCs of 1-, 3-, and 5-year survival confirmed the well-predictive efficacy of this model in EOC. The risk score was used to divide the patients into high-risk and low-risk subgroups. The low-risk group patients tended to exhibit a lower immune infiltration status and a higher HRD score. Furthermore, consensus clustering analysis was employed to divide patients with EOC into three clusters based on the expression of the five HRRlncRNAs, which exhibited a significant difference in checkpoints’ expression levels and the tumor microenvironment (TME) status. Taken together, the results of this project supported that the five HRRlncRNA models might function as a biomarker and prognostic indicator with respect to predicting the PARP inhibitor and immune treatment in EOC.
The contribution of a MOET nucleus scheme for the improvement of Guzerá (Bos indicus) cattle for milk traits in Brazil
Authors: Campolina Diniz Peixoto Maria Gabriela , Carrara Eula Regina , Lopes Paulo Sávio , Tomita Bruneli Frank Ângelo , Penna Vânia Maldini
Published: September 2022

The Guzerá breed evolved from the introduction of breeds from India, mainly the Kankrej breed, into Brazilian livestock at the end of the 19th century. Guzerá adapted well to the climatic conditions of Brazil, where it is considered a dual-purpose breed and has been used for pasture-based beef, milk or dual-purpose production systems with the use of low-medium inputs. The importance of this genetic resource for milk production in tropical regions moved breeders to implement the National Breeding Program for the Improvement of Guzerá in 1994, based on both progeny testing and MOET nucleus schemes. We sought to evaluate the role of the MOET nucleus scheme in the phenotypic and genetic progress for milk traits in this breed. The initial database used in the present study consisted of 6,513 cows, daughters of 761 bulls. We performed genetic evaluations with different datasets using a linear mixed model in a single trait analysis, including the relationship matrix, in order to estimate breeding values. Inbreeding coefficients were also calculated using the relationship of descent between two parents. Annual phenotypic, genetic and inbreeding trends were obtained for each dataset, considering the genetic pathways of both the bull and the cow. The low genetic progress found for milk yield in the whole population (5.27 ± 0.30 kg/year) partially accounted for the dual-purpose selection goal, despite the higher genetic progress in the MOET nucleus (9.39 ± 0.79 kg/year). The inbreeding coefficient was minimized at the beginning of the breeding program based on the use of new lineages. Posteriorly, it started increasing again from 0.002 in 1991 to 0.008 in 2019. The results provided evidence of the significant contribution of the MOET nucleus scheme for the phenotypic and genetic progress of Guzerá breed for milk traits, as well as of the impact of the breeding program on the inbreeding coefficient rate in the early years. New strategies need to be designed for the Guzerá breed, to allow for greater improvement of milk traits and minimizing the rate of the inbreeding coefficient.
The role of the astrocyte in subarachnoid hemorrhage and its therapeutic implications
Authors: Li Rong , Zhao Min , Yao Di , Zhou Xiangyue , Lenahan Cameron , Wang Ling , Ou Yibo , He Yue
Published: September 2022

Subarachnoid hemorrhage (SAH) is an important public health concern with high morbidity and mortality worldwide. SAH induces cell death, blood−brain barrier (BBB) damage, brain edema and oxidative stress. As the most abundant cell type in the central nervous system, astrocytes play an essential role in brain damage and recovery following SAH. This review describes astrocyte activation and polarization after SAH. Astrocytes mediate BBB disruption, glymphatic–lymphatic system dysfunction, oxidative stress, and cell death after SAH. Furthermore, astrocytes engage in abundant crosstalk with other brain cells, such as endothelial cells, neurons, pericytes, microglia and monocytes, after SAH. In addition, astrocytes also exert protective functions in SAH. Finally, we summarize evidence regarding therapeutic approaches aimed at modulating astrocyte function following SAH, which could provide some new leads for future translational therapy to alleviate damage after SAH.
Construction and internal validation of a predictive model for risk of gastrointestinal bleeding in children with abdominal Henoch-Schönlein purpura: A single-center retrospective case-control study
Authors: Sun Lingli , Liu Wenjuan , Li Changjian , Zhang Yong , Shi Yuanyuan
Published: September 2022

Early identification of gastrointestinal (GI) bleeding in children with abdominal Henoch-Schönlein purpura (HSP) is essential for their subsequent treatment, and a risk prediction model for GI bleeding in abdominal HSP was constructed in this study to assist physicians in their decision-making. In a single-center retrospective study, the children collected were divided into two parts, a training set and a validation set, according to the time of admission. In the training set, univariate analysis was performed to compare demographic data and laboratory tests between the two groups of children with GI and non-GI bleeding, and the independent risk factors were derived using binary logistic equations to develop a scoring model for predicting GI bleeding in children by odds ratio (OR) values and receiver operating characteristic curves. The scoring model was then internally validated in validation set. The results showed that there were 11 indicators were statistically different between the two groups in the training set, including white blood cells, neutrophil-to-lymphocyte ratio, platelets, eosinophils (EO), high sensitivity C-reactive protein (hsCRP), activated partial thromboplastin time (APTT), sodium, potassium (K), albumin (ALB), Total bilirubin, and Immunoglobulin E (IgE) in the univariate analysis. Among them, the independent risk factors for GI bleeding included the six indicators of EO ≤ 0.045×10^9/L, hsCRP ≥ 14.5 mg/L, APTT ≤ 28.1 s, K ≥ 4.18 mmol/L, ALB ≤ 40.6 g/L, and IgE ≥ 136 ng/mL. According to the OR values, where EO ≤ 0.045 ×10^9/L, hsCRP ≥ 14.5 mg/L, APTT ≤ 28.1 s, ALB ≤ 40.6 g/L each scored 3 points, K ≥ 4.18 mmol/L, IgE ≥ 136 ng/mL each scored 2 points, and the total score was 0-16 points. The sensitivity and specificity of predicting GI bleeding were 88.7% and 64.2%, respectively, when the child scored ≥ 7 points. In the validation set, the sensitivity, specificity and accuracy of the model in predicting GI bleeding were 77.4%, 74.5% and 75.2%, respectively. In conclusion, the construction of a scoring model to predict the risk of GI bleeding from abdominal HSP would greatly assist pediatricians in predicting and identifying children at high risk for GI bleeding at an early stage.
Associations of microbial and indoleamine-2,3-dioxygenase-derived tryptophan metabolites with immune activation in healthy adults
Authors: Riazati Niknaz , Kable Mary E. , Newman John W. , Adkins Yuriko , Freytag Tammy , Jiang Xiaowen , Stephensen Charles B.
Published: September 2022

Background

 Tryptophan (Trp) metabolites from intestinal bacteria (indole, indole acetic acid [IAA] and indole propionic acid [IPA]), and the Trp metabolite kynurenine (Kyn) from the indoleamine 2,3-dioxygenase (IDO) pathway, are aryl hydrocarbon receptor (AhR) agonists and thus, can regulate immune activityviathe AhR pathway. We hypothesized that plasma concentrations of these metabolites would be associated with markers of immune activation in a cohort of healthy adults in a manner consistent with AhR-mediated immune-regulation. We also hypothesized that the plasma Kyn/Trp ratio, a marker of IDO activity, would be associated with immune markers reflecting IDO activation in innate immune cells. Finally, we hypothesized that some intestinal bacteria would be associated with plasma indole, IPA and IAA, and that these bacteria themselves would be associated with immune markers.

Methods

A novel set of 88 immune markers, and plasma Trp metabolites, were measured in 362 healthy adults. Bacterial taxa from stool were identified by 16S rRNA gene analysis. Multiple linear regression analysis was used to identify significant associations with immune markers.

Results

The sum of indole and IAA was positively associated with natural killer T-cells levels. Kyn and Kyn/Trp were positively associated with neopterin and IP-10, markers of type 1 immunity, and TNF-α and C-reactive protein (CRP), markers of the acute phase response, and the regulatory cytokine IL-10. Three bacteria negatively associated with Trp metabolites were associated with markers of immune activation: the family Lachnospiraceae with higher lymphocyte counts but lower level of activated CD4 T-cells, the genus Dorea with higher production of IFN-γ by T-cells in PBMC cultures, and the genus Ruminococcus with higher production IL-6 in PBMC cultures stimulated with bacterial lipopolysaccharide (LPS).

Conclusions

In this cohort of healthy adults bacterial Trp metabolites were not strongly associated with immune markers. Conversely, the Kyn/Trp ratio was strongly associated with markers of systemic inflammation and the acute phase response, consistent with IDO activation in innate immune cells. Finally, commensal bacteria associated with lower plasma (and perhaps intestinal) levels of bacterial Trp metabolites were associated with greater immune activation, possibly reflecting decreased regulatory immune activity related to lower intestinal levels of bacterial indole metabolites.
Cuproptosis regulator-mediated patterns associated with immune inﬁltration features and construction of cuproptosis-related signatures to guide immunotherapy
Authors: Wang Gongjun , Xiao Ruoxi , Zhao Shufen , Sun Libin , Guo Jing , Li Wenqian , Zhang Yuqi , Bian Xiaoqian , Qiu Wensheng , Wang Shasha
Published: September 2022

Background

Liver hepatocellular carcinoma (HCC) is a prevalent cancer that lacks a sufficiently efficient approach to guide immunotherapy. Additionally, cuproptosis is a recently identified regulated cell death program that is triggered by copper ionophores. However, its possible significance in tumor immune cell infiltration is still unclear.

Methods

Cuproptosis subtypes in HCC were identified using unsupervised consensus cluster analysis based on 10 cuproptosis regulators expressions, and a cuproptosis-related risk signature was generated using univariate and LASSO Cox regression and validated using the ICGC data. Moreover, the relationship between signature and tumor immune microenvironment (TME) was studied through tumor immunotherapy responsiveness, immune cell infiltration, and tumor stem cell analysis. Finally, clinical specimens were analyzed using immunohistochemistry to verify the expression of the three genes in the signature.

Results

Two subtypes of cuproptosis regulation were observed in HCC, with different immune cell infiltration features. Genes expressed differentially between the two cuproptosis clusters in the TCGA were determined and used to construct a risk signature that was validated using the ICGC cohort. Greater immune and stromal cell infiltration were observed in the high-risk group and were associated with unfavorable prognosis. Elevated risk scores were linked with higher RNA stemness scores (RNAss) and tumor mutational burden (TMB), together with a greater likelihood of benefitting from immunotherapy.

Conclusion

It was found that cuproptosis regulatory patterns may play important roles in the heterogeneity of immune cell infiltration. The risk signature associated with cuproptosis can assess each patient’s risk score, leading to more individualized and effective immunotherapy.
Investigating the influence of breastfeeding on asthma in children under 12 years old in the UK Biobank
Authors: Hou Wenyan , Guan Fengjun , Xia Lei , Xu Yue , Huang Shuiping , Zeng Ping
Published: September 2022

Background

Childhood-onset asthma (COA) has become a major and growing problem worldwide and imposes a heavy socioeconomic burden on individuals and families; therefore, understanding the influence of early-life experiences such as breastfeeding on COA is of great importance for early prevention.

Objectives

To investigate the impact of breastfeeding on asthma in children under 12 years of age and explore its role at two different stages of age in the UK Biobank cohort.

Methods

A total of 7,157 COA cases and 158,253 controls were obtained, with information regarding breastfeeding, COA, and other important variables available through questionnaires. The relationship between breastfeeding and COA were examined with the logistic regression while adjusting for available covariates. In addition, a sibling analysis was performed on 398 pairs of siblings to explain unmeasured family factors, and a genetic risk score analysis was performed to control for genetic confounding impact. Finally, a power evaluation was conducted in the sibling data.

Results

In the full cohort, it was identified that breastfeeding had a protective effect on COA (the adjusted odds ratio (OR)=0.875, 95% confidence intervals (CIs): 0.831~0.922; P=5.75×10-7). The impact was slightly pronounced in children aged 6-12 years (OR=0.852, 95%CIs: 0.794~0.914, P=7.41×10-6) compared to those aged under six years (OR=0.904, 95%CIs: 0.837~0.975, P=9.39×10-3), although such difference was not substantial (P=0.266). However, in the sibling cohort these protective effects were no longer significant largely due to inadequate samples as it was demonstrated that the power was only 23.8% for all children in the sibling cohort under our current setting. The protective effect of breastfeeding on COA was nearly unchanged after incorporating the genetic risk score into both the full and sibling cohorts.

Conclusions

Our study offered supportive evidence for the protective effect of breastfeeding against asthma in children less than 12 years of age; however, sibling studies with larger samples were warranted to further validate the robustness our results against unmeasured family confounders. Our findings had the potential to encourage mothers to initiate and prolong breastfeeding.
Independent and interactive effects of eye rubbing and atopy on keratoconus
Authors: Yang Kaili , Li Dan , Xu Liyan , Pang Chenjiu , Zhao Dongqing , Ren Shengwei
Published: September 2022

Purpose

To evaluate the independent and interactive effects of eye rubbing and atopy on keratoconus (KC) in central China.

Methods

A total of 330 KC patients and 330 controls were recruited in the case-control study. Eye rubbing and history of atopy were recorded through face-to-face interviews. The association between KC and eye rubbing, atopy, interactive effects of eye rubbing and atopy were analyzed by logistic regression, and the odds ratios (OR), relative excess risk due to interaction (RERI), attributable proportion (AP), synergy (S) index, and 95% confidence intervals (95% CI) were calculated.

Results

A total of 228 patients (69.09%) had an eye rubbing history, and 53 (16.06%) had an atopy history in the KC group, which were both higher than that in the control group (p<0.001). Eye rubbing and atopy were positively associated with KC in multivariate analysis, with ORs (95% CIs) of 15.11 (10.02, 22.80) and 5.30 (2.59, 10.84), respectively. Compared to non-eye rubbing and non-atopy eyes, the risk for eye rubbing coexisted with atopy was 52.31 (12.25, 223.35). No significant associations were found between KC and multiplicative interaction (p=0.608). The RERI, AP, and S values were 32.89 (-43.35, 109.14), 0.63 (0.05, 1.21), and 2.79 (0.56, 13.96), respectively, with no significant association between additive interaction and KC. No significant associations were found between eye rubbing, atopy and the severity of KC (p>0.05).

Conclusion

Eye rubbing and atopy were separately positively associated with KC, and there was a strong impact of coexistent eye rubbing and atopy on KC in China. Further multi-center and cohort study need to be conducted to explore the role of eye rubbing and atopy in the occurrence and development of KC.
An insight into gill microbiome of Eastern Mediterranean wild fish by applying next generation sequencing
Authors: Itay Peleg , Shemesh Eli , Ofek-Lalzar Maya , Davidovich Nadav , Kroin Yael , Zrihan Shlomi , Stern Nir , Diamant Arik , Wosnick Natascha , Meron Dalit , Tchernov Dan , Morick Danny
Published: September 2022

Bacterial diseases of marine fish inflict significant economic damage to fisheries and aquaculture and pose an increasing risk to public health. When addressing fish disease, an accumulating body of research suggests adding another factor to the classic epidemiological triangle of host-environment-pathogen: the microbiome. The gills, being a gateway into the fish body and bearing an important role in fish homeostasis, have been found to be a proxy of the gut microbiota as well as reflecting the microbial communities of surrounding water. In this study, 16S rRNA amplicons of bacterial DNA extracted from the gills of 89 asymptomatic specimens of three wild fish species (Pagrus caeruleostictus, Scomber colias and Saurida lessepsianus) were sequenced using Next Generation Sequencing methodology (NGS). Data analyses revealed the presence of 41 potentially pathogenic species, including several zoonotic agents. Five genera known to include widespread and potentially pathogenic species were chosen for further investigation: Photobacterium, Shewanella, Staphylococcus, Streptococcus and Vibrio. Of these, Photobacterium and Shewanella proved the most prevalent and abundant, making up 30.2% and 11.3% of the Bluespotted seabream (P. caeruleostictus) gill microbiome alone. Photobacterium damselae and Shewanella baltica were most common at the species level. The remaining genera - Vibrio, Staphylococcus and Streptococcus – were less prevalent, and at a species level were comprised of only 1−4% potentially pathogenic representatives. Gill microbiomes exhibited host species specificity, with strong correlations between certain bacterial taxonomic groups. No definite obligatory pathogenic bacteria were found in this study, and it was suggested that pathogenic species are present as either covert pathobionts or as opportunists of the fish found to host them.
Identification of ventilated and submarine glacial meltwaters in the Amundsen Sea, Antarctica, using noble gases
Authors: Shin DongYoub , Hahm Doshik , Kim Tae-Wan , Rhee Tae Siek , Lee SangHoon , Park Keyhong , Park Jisoo , Kwon Young Shin , Kim Mi Seon , Lee Tongsup
Published: September 2022

To delineate the glacial meltwater distribution, we used five noble gases for optimum multiparameter analysis (OMPA) of the water masses in the Dotson-Getz Trough (DGT), Amundsen Sea. The increased number of tracers allowed us to define potential source waters at the surface, which have not been possible with a small set of tracers. The highest submarine meltwater (SMW) fraction (~0.6%) was present at the depth of ~450 m near the Dotson Ice Shelf. The SMW appeared to travel beyond the continental shelf break along an isopycnal layer. Air-equilibrated freshwater (up to 1.5%), presumably ventilated SMW (VMW) and surface melts, was present in the surface layer (<100 m). The distribution of SMW indicates that upwelled SMW, known as an important carrier of iron to the upper layer, amounts for 29% of the SMW in the DGT. The clear separation of VMW from SMW enabled partitioning of meltwater into locally-produced and upstream fractions and estimation of the basal melting of 53 – 94 Gt yr-1 for the adjacent ice shelves, assuming that the SMW fractions represent accumulation since the previous Winter Water formation. The Meteoric Water (MET) fractions, consisting of SMW and VMW, comprised 24% of those derived from oxygen isotopes, indicating that the annual input from basal melting is far less than the inventory of meteoric water, represented by MET.
Intracellular trafficking of fatty acids in the fish intestinal epithelial cell line RTgutGC
Authors: Selvam Chandrasekar , Saito Takaya , Sissener Nini H. , Philip Antony J. Prabhu , Sæle Øystein
Published: September 2022

The shift towards higher inclusion of vegetable oils (VOs) in aquafeeds has resulted in major changes in dietary fatty acid composition, especially increased amounts of monounsaturated fatty acids (MUFAs) and decreased polyunsaturated fatty acids (PUFAs) and saturated fatty acids (SFAs). However, little is known about how this change in fatty acid (FA) profile affects the intracellular fate of these fatty acids in the intestinal cells. To investigate this topic, we used the rainbow trout intestinal epithelial cell line (RTgutGC) as an in vitro model. The cells were incubated with either palmitic acid (16:0, PA), oleic acid (18:1n-9, OA), or arachidonic acid (20:4n-6, ARA), to represent the SFA, MUFA, and PUFA, respectively. In all experiments, the RTgutGC were incubated with either non-labeled or radiolabeled FA (PA, OA, or ARA) for 16 h at 190C. The cells were then analyzed for the occurrence of cytosolic lipid droplets (CLD) with confocal microscopy, transcriptomic analysis (non-labeled FA experiments) and lipid class composition in the cells and serosal media from the basolateral side of the cells (radiolabeled FA experiments). CLD accumulation was higher in RTgutGC exposed to OA compared to cells given PA or ARA. This was coupled with increased volume, diameter, and surface area of CLDs in OA treated cells than with other FAs (PA, ARA). The results from radiolabeled FAs performed on permeable transwell inserts showed that OA increased the triacylglycerides (TAG) synthesis and was primarily stored in the cells in CLDs; whereas a significant amount of ARA was transported as TAG to the basolateral compartment. A significant proportion of free FAs was found to be excreted to the serosal basolateral side by the cells, which was significantly higher for PA and OA than ARA. Although there were clear clusters in differentially expressed genes (DEGs) for each treatment group, results from transcriptomics did not correlate to lipid transport and CLD analysis. Overall, the accumulation of TAG in CLDs was higher for oleic acid (OA) compared to arachidonic acid (ARA) and palmitic acid (PA). To conclude, carbon chain length and saturation level of FA differently regulate their intracellular fate during fatty acid absorption.
A multi-criteria analysis framework for conflict resolution in the case of offshore wind farm sitting: A study of England and the Netherlands offshore space
Authors: Guşatu Laura Florentina , Zuidema Christian , Faaij André
Published: September 2022

Growing EU energy ambitions in the North Sea region are urging for an accelerated deployment of large-scale renewable energy (RE) infrastructure, with offshore wind farms (OWF) playing an essential role. However, implementing the current EU targets is limited by the competing spatial claims between existing sea uses and OWFs and uncertainties related to potential risks of interaction, creating important barriers to a swift roll-out of RE infrastructure. In tackling this issue, we are proposing a transparent and spatially explicit multi-criteria analysis tool to quantify and qualify the main risks and opportunities resulting from the interaction between OWFs and four other seas user groups (shipping, marine protected areas, fisheries and military activities). The multi-criteria analysis framework is accounting for sectoral activity specific risks of interaction with OWFs, classified through the respective available conflict resolution options, which allows for the quantification of the average conflict score (ACS) between the selected activities and OWFs. Using the resulting ACS and the geo-location of areas of interaction, we map areas of high and low conflict with OWFs and indicate management options for solving, minimizing or compensating the conflicts. Our results indicate that conflict resolution strategies in marine mammal’s habitats present the highest potential for unlocking medium value OWF sites both for the Dutch case (15.8 – 28 GWs) and English case (15.94-28.3 GWs), followed by pelagic fisheries in the Dutch case (15-26.9 GWs) and passenger/cargo routes in the English case (10.9-19.4 GWs). The strategic planning of increasingly larger and more complex OWF projects will require a better understanding not only of the level of conflict with the other sea users in relation to the valuable OWF sites, but also potential management options to solve, minimize or compensate those conflicts. As an example, accessing 6.8-12.3 GWs in high value OWF sites in the Dutch EEZ will require the relocating of military flying areas with forbidden access, while technical solutions such as “fill-in-the-gap” or relocation of lower airspace radars could unlock 10.25-18.16 GWs in the English EEZ. By avoiding high risk areas and prioritizing areas of low conflict, the bottlenecks, negative effects and inefficiencies related to space management options can be minimized, while synergies and positive effects of OWF deployment can be timely captured.
Combined biophysical and genetic modelling approaches reveal new insights into population connectivity of New Zealand green-lipped mussels
Authors: Quigley Calvin N. , Roughan Moninya , Chaput Romain , Jeffs Andrew G. , Gardner Jonathan P. A.
Published: September 2022

Understanding how ocean currents affect larval transport is crucial for understanding population connectivity in sessile marine invertebrates whose primary dispersal opportunity occurs during the pelagic larval stage. This study used Lagrangian particle tracking experiments to examine population connectivity in New Zealand green-lipped mussels (Perna canaliculus) at the national scale. Predicted patterns of larval dispersal were compared to published multi-locus microsatellite data of observed population genetic structure. Estimates of oceanographic circulation correlated significantly with FST, and we conclude that hydrodynamic processes are important in driving genetic connectivity. However, no evidence was found for an oceanographic barrier to gene flow south of Cook Strait, an important feature of genetic structure observed across several marine invertebrate species. Discrepancies between genetic and biophysical data may be explained by several factors including the different timescales of connectivity described by the two methods and the impact of localised ecological conditions and corresponding adaptations in genetic structure not captured by the bipohysical model. Population genetic analyses provide empirical data on realised connectivity and Lagrangian particle tracking experiments reveal information about directionality and asymmetry of connections that often cannot be determined by molecular analyses alone, thus a multidisciplinary approach is recommended.
“The people’s fish”: Sociocultural dimensions of recreational fishing for Atlantic mackerel in Nova Scotia
Authors: Hamelin Kayla M. , MacNeil M. Aaron , Curran Kaitlyn , Bailey Megan
Published: September 2022

Atlantic mackerel or Amalamaq (Scomber scombrus) has been subject to diverse fishing pressures in Atlantic Canada for commercial, bait, recreational, and Indigenous food-social-ceremonial (FSC) fisheries, resulting in its substantial social and cultural significance in the region. Recent stock declines have led to closures of the commercial and bait mackerel fisheries, while recreational and FSC harvesters retain respectively the ability or right to fish. Here we assess the human dimensions of the recreational mackerel fishery through administration of a voluntary questionnaire shared at wharfs and through online/social media channels. A total of 285 responses were received, with results providing a rich picture of this poorly-engaged stakeholder community. The operational dimensions of this fishery and benefits derived from recreational fishing are explored. While recommendations for conservation and management measures were not solicited explicitly, many respondents shared comments and suggestions regarding management of the stock. Engaging more actively with recreational mackerel anglers may allow for enhanced assessments of the fishery and foster local stewardship toward more effective fisheries management.
Citizen scientists’ dive computers resolve seasonal and interannual temperature variations in the Red Sea
Authors: Marlowe Celia , Hyder Kieran , Sayer Martin D. J. , Kaiser Jan
Published: September 2022

Dive computers have the potential to provide depth resolved temperature data that is often lacking especially in close to shore, but spatiotemporal assessment of the robustness of this citizen science approach has not been done. In this study, we provide this assessment for the Red Sea, one of the most dived areas in the world. A comparison was conducted between 17 years of minimum water temperatures collected from SCUBA dive computers in the northern Red Sea (23–30° N, 32–39.4° E), satellite-derived sea surface temperatures from the Operational Sea Surface Temperature and Sea Ice Analysis (OSTIA) optimal interpolation product, and depth-banded monthly mean in-situ temperature from the TEMPERSEA dataset, which incorporates data originating from several in-situ recording platforms (including Argo floats, ships and gliders). We show that dive computer temperature data clearly resolve seasonal patterns, which are in good agreement in both phase and amplitude with OSTIA and TEMPERSEA. On average, dive computer temperatures had an overall negative bias of (–0.5 ± 1.1) °C compared with OSTIA and (–0.2 ± 1.4) °C compared with TEMPERSEA. As may be expected, increased depth-related biases were found to be associated with stratified periods and shallower mixed layer depths, i.e., stronger vertical temperature gradients. A south-north temperature gradient consistent with values reported in the literature was also identifiable. Bias remains consistent even when subsampling just 1% of the total 9310 dive computer datapoints. We conclude that dive computers offer potential as an alternative source of depth-resolved temperatures to complement existing in situ and satellite SST data sources.
A novel technique for seabed strata deformation in situ monitoring
Authors: Ge Yongqiang , Chen Jiawang , Zhang Peihao , Cao Chen , Le Xiaoling , Ai Jingkun , Zhou Peng , Liang Tao
Published: September 2022

Seafloor strata deformation monitoring is important for gas hydrate exploitation and the monitoring and early warning of seabed instabilities. Due to the limitation of in situ monitoring technology, existing observations are carried out with geophysical methods to provide basic geomorphological characteristics and stratigraphic structures. However, it is of equal importance to study the in situ evolution mechanism of the process of strata deformation, which relies heavily on long-term in situ observations. An in situ monitoring instrument for seabed strata deformation monitoring is presented. Sufficient theoretical, numerical, and experimental studies were carried out to conduct a mechanical analysis on the entire deployment process of the instrument. The maximum penetration resistance and reaming pressure were calculated during the deployment process, and the stability and feasibility of the deployment method were verified. To validate the maximum penetration resistance obtained and the monitoring performance of the instrument, field tests were conducted on a tidal flat in Changzhi Island. The penetration resistance of the instrument and the strata deformation of the tidal flat were measured and obtained. The results demonstrate the feasibility of the presented instrument.
Fine-scale ensemble species distribution modeling of eelgrass (Zostera marina) to inform nearshore conservation planning and habitat management
Authors: O’Brien John M. , Wong Melisa C. , Stanley Ryan R.E.
Published: September 2022

Baseline data on the distribution and extent of biogenic habitat-forming species at a high spatial resolution are essential to inform habitat management strategies, preserve ecosystem integrity, and achieve effective conservation objectives in the nearshore. Model-based approaches to map suitable habitat for these species are a key tool to address this need, filling in gaps where observations are otherwise unavailable and remote sensing methods are limited by turbid waters or cannot be applied at scale. We developed a high resolution (35 m) ensemble species distribution model to predict the distribution of eelgrass (Zostera marina) along the Atlantic coast of Nova Scotia, Canada where the observational coverage of eelgrass occurrence is sparse and nearshore waters are optically complex. Our ensemble model was derived as a performance-weighted average prediction of 7 different modeling methods fit to 6 physical predictors (substrate type, depth, wave exposure, slope, and two bathymetric position indices) and evaluated with a 5-fold spatially-blocked cross-validation procedure. The ensemble model showed moderate predictive performance (Area Under the Receiver-Operating Characteristic Curve (AUC) = 0.803 ± 0.061, True Skill Statistic (TSS) = 0.531 ± 0.100; mean ± SD), high sensitivity (92.0 ± 4.5), and offered some improvement over individual models. Substrate type, depth, and relative wave exposure were the most influential predictors associated with eelgrass occurrence, where the highest probabilities were associated with sandy and sandy-mud sediments, depths ranging 0 m – 4 m, and low to intermediate wave exposure. Within our study region, we predicted a total extent of suitable eelgrass habitat of 38,130 ha. We found suitable habitat was particularly extensive within the long narrow inlets and extensive shallow flats of the South Shore, Eastern Shore, and Bras d’Or Lakes. We also identified substantial overlap of eelgrass habitat with previously identified Ecologically and Biologically Significant Areas that guide regional conservation planning while also highlighting areas of greater prediction uncertainty arising from disagreement among modeling methods. By offering improved sensitivity and insights into the fine-scale regional distribution of a habitat-forming species with associated uncertainties, our ensemble-based modeling approach provides improved support to numerous nearshore applications including conservation planning and restoration, marine spatial and emergency response planning, environmental impact assessments, and fish habitat protection.
Air-water CO2 and water-sediment O2 exchanges over a tidal flat in Tokyo Bay
Authors: Tokoro Tatsuku , Kuwae Tomohiro
Published: September 2022

Despite the potential for carbon storage in tidal flats, little is known about the details of relevant processes because of the complexity of intertidal physical and chemical environments and the uniqueness of the biota. We measured air-water carbon dioxide (CO2) fluxes and water-sediment oxygen (O2) fluxes over a tidal flat in Tokyo Bay by the eddy covariance method, which has the potential to facilitate long-term, broad-scale, continuous monitoring of carbon flows in tidal flats. The results indicated that throughout the tidal flat in Tokyo Bay, CO2 was taken up from the atmosphere at a rate of 6.05 ± 7.14 (mean ± SD) mmol m−2 hour−1, and O2 was taken up from the water into the sediment at a rate of 0.62 ± 1.14 (mean ± SD) mmol m−2 hour−1. The fact that the CO2 uptake rate was about 18 times faster than the previously reported average uptake rate in the whole area of Tokyo Bay was attributable to physical turbulence in the water column caused by bottom friction. Statistical analysis suggested that light intensity and water temperature were the major factors responsible for variations of CO2 and O2 exchange, respectively. Other factors such as freshwater inputs, atmospheric stability, and wind speed also affected CO2 and O2 exchange. High rates of O2 uptake from the water into the sediment surface and high rates of atmospheric CO2 uptake into the water column occurred simultaneously (R2 = 0.44 and 0.47 during day and night, respectively). The explanation could be that photosynthetic consumption of CO2 and production of O2 in the water column increased the downward CO2 (air to water) and O2 (water to sediment) fluxes by increasing the concentration gradients of those gases. Resuspension of sediment in the low-O2 layer by physical disturbance would also increase the O2 concentration gradient and the O2 flux in the water.
Allergic asthma manifestations in human and seropositivity to Toxocara, a soil-transmitted helminth of carnivores: A case-control study and scoping review of the literature
Authors: Bazargan Nasrin , Lari Azadeh Nasri , Borhani Mehdi , Fasihi Harandi Majid
Published: September 2022

Asthma is a common respiratory disease affecting humans. Helminth parasites, including Toxocara species, have been implicated as predisposing factors of asthma. However, various studies present different findings on asthma-Toxocara association. Herein, we investigated the association of asthma manifestations with Toxocara seropositivity in a case-control setting on 248 participants (147 women and 101 men), with 124 healthy individuals as the control group and 124 patients known to have asthma based on the medical records of asthma clinics of Kerman University of Medical Sciences. Consequently, we presented a scoping review of all previous studies carried out on this topic, summarizing current findings and existing knowledge on this issue. Of 248 participants, 31 (12.5%) were Toxocara-seropositive, of which 19 (15.3%) were in the patient group and 12 (9.7%) in the control group. A significant relationship was found between asthma severity and age in Toxocara-seropositive individuals (P < 0.04). We found no significant relationship between asthma and Toxocara seropositivity. We identified 7,724 related records in three major scientific databases, NCBI PubMed, Scopus, and Google Scholar. The review of the literature showed that there are 80 published articles on asthma-Toxocara relationship with contradictory findings. More than half of the studies were performed in only four countries, namely, Brazil, the Netherlands, the United States, and Iran. The study population in 70% of the studies were children, and few studies investigated asthma-Toxocara association in adults. The most common study designs for investigating the association of asthma and Toxocara seropositivity were cross-sectional (35.0%), case-control (27.5%), and animal experimental (12.5%) studies. This study found no significant relationship between asthma manifestations and toxocariasis in a case-control setting. However, a scoping review of the current literature suggests that further experimental and field longitudinal cohort studies are required to elucidate the nature of asthma-Toxocara interaction in humans.
An update on preclinical models of hereditary haemorrhagic telangiectasia: Insights into disease mechanisms
Authors: Arthur Helen M. , Roman Beth L.
Published: September 2022

Endoglin (ENG) is expressed on the surface of endothelial cells (ECs) where it efficiently binds circulating BMP9 and BMP10 ligands to initiate activin A receptor like type 1 (ALK1) protein signalling to protect the vascular architecture. Patients heterozygous for ENG or ALK1 mutations develop the vascular disorder known as hereditary haemorrhagic telangiectasia (HHT). Many patients with this disorder suffer from anaemia, and are also at increased risk of stroke and high output heart failure. Recent work using animal models of HHT has revealed new insights into cellular and molecular mechanisms causing this disease. Loss of the ENG (HHT1) or ALK1 (HHT2) gene in ECs leads to aberrant arteriovenous connections or malformations (AVMs) in developing blood vessels. Similar phenotypes develop following combined EC specific loss of SMAD1 and 5, or EC loss of SMAD4. Taken together these data point to the essential role of the BMP9/10-ENG-ALK1-SMAD1/5-SMAD4 pathway in protecting the vasculature from AVMs. Altered directional migration of ECs in response to shear stress and increased EC proliferation are now recognised as critical factors driving AVM formation. Disruption of the ENG/ALK1 signalling pathway also affects EC responses to vascular endothelial growth factor (VEGF) and crosstalk between ECs and vascular smooth muscle cells. It is striking that the vascular lesions in HHT are both localised and tissue specific. Increasing evidence points to the importance of a second genetic hit to generate biallelic mutations, and the sporadic nature of such somatic mutations would explain the localised formation of vascular lesions. In addition, different pro-angiogenic drivers of AVM formation are likely to be at play during the patient’s life course. For example, inflammation is a key driver of vessel remodelling in postnatal life, and may turn out to be an important driver of HHT disease. The current wealth of preclinical models of HHT has led to increased understanding of AVM development and revealed new therapeutic approaches to treat AVMs, and form the topic of this review.
Chitosan-based delivery system enhances antimicrobial activity of chlorhexidine
Authors: Hemmingsen Lisa Myrseth , Panchai Pimmat , Julin Kjersti , Basnet Purusotam , Nystad Mona , Johannessen Mona , Škalko-Basnet Nataša
Published: September 2022

Infected chronic skin wounds and other skin infections are increasingly putting pressure on the health care providers and patients. The pressure is especially concerning due to the rise of antimicrobial resistance and biofilm-producing bacteria that further impair treatment success. Therefore, innovative strategies for wound healing and bacterial eradication are urgently needed; utilization of materials with inherent biological properties could offer a potential solution. Chitosan is one of the most frequently used polymers in delivery systems. This bioactive polymer is often regarded as an attractive constituent in delivery systems due to its inherent antimicrobial, anti-inflammatory, anti-oxidative, and wound healing properties. However, lipid-based vesicles and liposomes are generally considered more suitable as delivery systems for skin due to their ability to interact with the skin structure and provide prolonged release, protect the antimicrobial compound, and allow high local concentrations at the infected site. To take advantage of the beneficial attributes of the lipid-based vesicles and chitosan, these components can be combined into chitosan-containing liposomes or chitosomes and chitosan-coated liposomes. These systems have previously been investigated for use in wound therapy; however, their potential in infected wounds is not fully investigated. In this study, we aimed to investigate whether both the chitosan-containing and chitosan-coated liposomes tailored for infected wounds could improve the antimicrobial activity of the membrane-active antimicrobial chlorhexidine, while assuring both the anti-inflammatory activity and cell compatibility. Chlorhexidine was incorporated into three different vesicles, namely plain (chitosan-free), chitosan-containing and chitosan-coated liposomes that were optimized for skin wounds. Their release profile, antimicrobial activities, anti-inflammatory properties, and cell compatibility were assessed in vitro. The vesicles comprising chitosan demonstrated slower release rate of chlorhexidine and high cell compatibility. Additionally, the inflammatory responses in murine macrophages treated with these vesicles were reduced by about 60% compared to non-treated cells. Finally, liposomes containing both chitosan and chlorhexidine demonstrated the strongest antibacterial effect against Staphylococcus aureus. Both chitosan-containing and chitosan-coated liposomes comprising chlorhexidine could serve as excellent platforms for the delivery of membrane-active antimicrobials to infected wounds as confirmed by improved antimicrobial performance of chlorhexidine.