bluuebunny/crossref_metadata_2025 huggingface dataset:
Preliminary Investigation on Vacancy Filling by Small Molecules on the Performance of Dye-Sensitized Solar Cells: The Case of a Type-II Absorber
Authors: Asiam Francis Kwaku , Hao Nguyen Huy , Kaliamurthy Ashok Kumar , Kang Hyeong Cheol , Yoo Kicheon , Lee Jae-Joon
Published: July 2021

The steric shielding offered by sensitizers on semiconducting surfaces as a result of branching in the dyes used offers the less utilization of semiconducting substrate sites during device fabrication in dye-sensitized solar cells (DSSCs). This work proposes a strategy to increase the coverage through the utilization of small molecules which have the ability to penetrate into the sites. The small molecules play the dual role of vacancy filling and sensitization, which can be viewed as an alternative to co-sensitization also. Hence, we show for the first time ever that the co-adsorption of catechol with Z907 as a sensitizer enhances the electron density in the photo-anode by adsorbing on the vacant sites. Catechol was subsequently adsorbed on TiO2 after Z907 as it has a stronger interaction with TiO2 owing to its favorable thermodynamics. The reduced number of vacant sites, suppressed charge recombination, and enhanced spectral response are responsible for the improvement in the PCEs. Quantitatively, both organic and aqueous electrolytes were used and the co-sensitized DSSCs had PCE enhancements of 7.2 and 60%, respectively, compared to the control devices.
Co-Immobilized Capillary Enzyme Reactor Based on Beta-Secretase1 and Acetylcholinesterase: A Model for Dual-Ligand Screening
Authors: Vilela Adriana Ferreira Lopes , Narciso dos Reis Vitor Eduardo , Cardoso Carmen Lúcia
Published: July 2021

We have developed a dual enzymatic system assay involving liquid chromatography-mass spectrometry (LC–MS) to screen AChE and BACE1 ligands. A fused silica capillary (30 cm × 0.1 mm i.d. × 0.362 mm e.d.) was used as solid support. The co-immobilization procedure encompassed two steps and random immobilization. The resulting huAChE+BACE1-ICER/MS was characterized by using acetylcholine (ACh) and JMV2236 as substrates. The best conditions for the dual enzymatic system assay were evaluated and compared to the conditions of the individual enzymatic system assays. Analysis was performed in series for each enzyme. The kinetic parameters (KMapp) and inhibition assays were evaluated. To validate the system, galantamine and a β-secretase inhibitor were employed as standard inhibitors, which confirmed that the developed screening assay was able to identify reference ligands and to provide quantitative parameters. The combination of these two enzymes in a single on-line system allowed possible multi-target inhibitors to be screened and identified. The innovative huAChE+BACE1-ICER/MS dual enzymatic system reported herein proved to be a reliable tool to identify and to characterize hit ligands for AChE and BACE1 in an enzymatic competitive environment. This innovative system assay involved lower costs; measured the product from enzymatic hydrolysis directly by MS; enabled immediate recovery of the enzymatic activity; showed specificity, selectivity, and sensitivity; and mimicked the cellular process.
Novel Conditions in Conservation Translocations: A Conservative-Extrapolative Strategic Framework
Authors: Hunter-Ayad James , Jarvie Scott , Greaves Glen , Digby Andrew , Ohlemüller Ralf , Recio Mariano R. , Seddon Philip J.
Published: July 2021

In response to anthropogenic threats, conservation translocations are increasingly used to combat species' population and range declines. However, moving animals outside of their current distribution can mean introducing them to novel conditions, even in the case of reintroductions to formerly inhabited areas due to ecosystem changes following extirpation. This exposure to novel conditions introduces uncertainty that can undermine decision making for species conservation. Here we propose two strategies, which we define as conservative and extrapolative, for approaching and managing novelty and the resulting uncertainty in conservation translocations. Conservative strategies are characterised by the avoidance and removal of novel conditions as much as possible, whereas extrapolative strategies are more experimental, allowing exposure to novel conditions and monitoring outcomes to increase understanding of a species' ecology. As each strategy carries specific risks and opportunities, they will be applicable in different scenarios. Extrapolative strategies suit species in recovery which can afford some experimental management, or species facing novel and emerging threats which require less traditional translocations, such as assisted colonisations. We provide examples, applying our framework to two endemic New Zealand species with long histories of translocation management: tuatara (Sphenodon punctatus), a reptile and takahē (Porphyrio hochstetteri), a flightless bird.
Exercise Training Duration and Intensity Are Associated With Thicker Carotid Intima-Media Thickness but Improved Arterial Elasticity in Active Children and Adolescents
Authors: Baumgartner Lisa , Weberruß Heidi , Engl Tobias , Schulz Thorsten , Oberhoffer-Fritz Renate
Published: July 2021

Even though exercise generally has a positive effect on health, intensive exercise can have adverse effects on the vascular system of adults. This study aimed to investigate the association between training duration and intensity and vascular structure and function in 427 physically active children and adolescents (14.0 ± 1.94 years). In this study, we examined carotid intima-media thickness (cIMT), carotid diameter, and cIMT:diameter-ratio as parameters of carotid arterial structure and arterial compliance (AC), stiffness index β (β), elastic modulus (Ep), and carotid pulse wave velocity (PWVβ) as parameters of carotid arterial function with high-resolution ultrasound. We collected central systolic blood pressure (cSBP) and aortic pulse wave velocity (aPWV) as parameters of central arterial stiffness with an oscillometric device. We used the MoMo Physical Activity Questionnaire to record training duration and intensity. Training duration (p = 0.022) and intensity (p = 0.024) were associated with higher cIMT. Further, training duration was associated with lower central arterial stiffness (cSBP: p = 0.001; aPWV: p = 0.033) and improved AC (p < 0.001). Higher training intensity was related to improved AC (p < 0.001) and larger carotid diameter (p = 0.040). Boys presented thicker cIMT (p = 0.010), improved AC (p = 0.006), and lower central arterial stiffness (cSBP: p < 0.001; aPWV: p = 0.016) associated with higher training duration. Girls presented improved AC (p = 0.023) and lower Ep (p = 0.038) but higher β (p = 0.036) associated with higher training duration. Only boys demonstrated thicker cIMT (p = 0.016) and improved AC (p = 0.002) associated with higher training intensity. A quintile analyses of the training duration revealed thicker cIMT of children and adolescents in Q1 and Q5 than that in Q4 and Q5. Besides, Q1 showed lower cSBP compared to Q4 and Q5. Regarding training intensity, Q5 had thicker cIMT than Q2 and Q3. Although a higher training load is associated with thicker cIMT, the common carotid artery is also more elastic. This suggests that a higher training load leads to a functional adaptation of the carotid artery in youth.
Concepts, Structure and Developments of High-Reliability Cyber-Physical Fusion Based Coordinated Planning for Distribution System
Authors: Gao Chong , Wang Tianlin , Cao Huazhen , Wang Ziyao , Yu Tao , Cheng Ran
Published: July 2021

Coordinated control is imperative for the distribution network with the integration of wind power, photovoltaic system, and energy storage system. Meanwhile, the advanced automation terminal, intelligent control technology, and information communication technologies have greatly promoted the informatization of distribution networks which also increase the correlation between the physical system (primary system) and the cyber system (secondary system). Hence, it is critical to comprehensively coordinate the planning of the cyber-physical system for building a highly reliable power grid. This work summarizes a series of challenges brought by the highly coupled cyber-physical system, such as the primary and secondary collaborated planning models and solution algorithms. Then, the reliability assessment theories of cyber-physical systems and their application in distribution network planning models are introduced. Finally, three development directions of distribution network planning in the future are proposed, considering primary and secondary system coordinated planning.
Case Report: Uncommon Association of ITGB4 and KRT10 Gene Mutation in a Case of Epidermolysis Bullosa With Pyloric Atresia and Aplasia Cutis Congenita
Authors: Matyas Melinda , Miclea Diana , Zaharie Gabriela
Published: July 2021

Background: Epidermolysis bullosa is a rare form of genodermatosis produced by different gene mutations. The junctional form of the disease (JEB-PA) can associate pyloric atresia, renal abnormalities, and aplasia cutis congenita.

Case Description: A case of a male preterm newborn with suspicion of digestive tube malformation at fetal ultrasound and who was born by cesarian section. At birth, he presented extensive cutaneous aplasia on the lower limbs and bilaterally under ears; outer ear agenesis; nasal septum hypoplasia; micrognathia; multiple blisters on the face, trunk, and limbs; lower limb deformities and absence of toe nails. Pathological examination following a surgical procedure with unfavorable outcome showed pyloric atresia, junctional form of epidermolysis bullosa and aplasia cutis congenita. Homozygous variants in two genes were identified: c.3111+1G>A in ITGB4 (class 5) and c.1498G>T in KRT10 (class 3).

Conclusion: The particularity of our case is the novel finding of a coincidental occurrence in the context of consaguinity of two mutations in the ITGB4 and KRT10 genes, and clinical characteristics of epidermolysis bullosa.
Genomic Prediction for Whole Weight, Body Shape, Meat Yield, and Color Traits in the Portuguese Oyster Crassostrea angulata
Authors: Vu Sang V. , Knibb Wayne , Gondro Cedric , Subramanian Sankar , Nguyen Ngoc T. H. , Alam Mobashwer , Dove Michael , Gilmour Arthur R. , Vu In Van , Bhyan Salma , Tearle Rick , Khuong Le Duy , Le Tuan Son , O’Connor Wayne
Published: July 2021

Genetic improvement for quality traits, especially color and meat yield, has been limited in aquaculture because the assessment of these traits requires that the animals be slaughtered first. Genotyping technologies do, however, provide an opportunity to improve the selection efficiency for these traits. The main purpose of this study is to assess the potential for using genomic information to improve meat yield (soft tissue weight and condition index), body shape (cup and fan ratios), color (shell and mantle), and whole weight traits at harvest in the Portuguese oyster, Crassostrea angulata. The study consisted of 647 oysters: 188 oysters from 57 full-sib families from the first generation and 459 oysters from 33 full-sib families from the second generation. The number per family ranged from two to eight oysters for the first and 12–15 oysters for the second generation. After quality control, a set of 13,048 markers were analyzed to estimate the genetic parameters (heritability and genetic correlation) and predictive accuracy of the genomic selection for these traits. The multi-locus mixed model analysis indicated high estimates of heritability for meat yield traits: 0.43 for soft tissue weight and 0.77 for condition index. The estimated genomic heritabilities were 0.45 for whole weight, 0.24 for cup ratio, and 0.33 for fan ratio and ranged from 0.14 to 0.54 for color traits. The genetic correlations among whole weight, meat yield, and body shape traits were favorably positive, suggesting that the selection for whole weight would have beneficial effects on meat yield and body shape traits. Of paramount importance is the fact that the genomic prediction showed moderate to high accuracy for the traits studied (0.38–0.92). Therefore, there are good prospects to improve whole weight, meat yield, body shape, and color traits using genomic information. A multi-trait selection program using the genomic information can boost the genetic gain and minimize inbreeding in the long-term for this population.
Multiple-Tissue and Multilevel Analysis on Differentially Expressed Genes and Differentially Correlated Gene Pairs for HFpEF
Authors: Zhou Guofeng , Sun Shaoyan , Yuan Qiuyue , Zhang Run , Jiang Ping , Li Guangyu , Wang Yong , Li Xiao
Published: July 2021

Heart failure with preserved ejection fraction (HFpEF) is a complex disease characterized by dysfunctions in the heart, adipose tissue, and cerebral arteries. The elucidation of the interactions between these three tissues in HFpEF will improve our understanding of the mechanism of HFpEF. In this study, we propose a multilevel comparative framework based on differentially expressed genes (DEGs) and differentially correlated gene pairs (DCGs) to investigate the shared and unique pathological features among the three tissues in HFpEF. At the network level, functional enrichment analysis revealed that the networks of the heart, adipose tissue, and cerebral arteries were enriched in the cell cycle and immune response. The networks of the heart and adipose tissues were enriched in hemostasis, G-protein coupled receptor (GPCR) ligand, and cancer-related pathway. The heart-specific networks were enriched in the inflammatory response and cardiac hypertrophy, while the adipose-tissue-specific networks were enriched in the response to peptides and regulation of cell adhesion. The cerebral-artery-specific networks were enriched in gene expression (transcription). At the module and gene levels, 5 housekeeping DEGs, 2 housekeeping DCGs, 6 modules of merged protein–protein interaction network, 5 tissue-specific hub genes, and 20 shared hub genes were identified through comparative analysis of tissue pairs. Furthermore, the therapeutic drugs for HFpEF-targeting these genes were examined using molecular docking. The combination of multitissue and multilevel comparative frameworks is a potential strategy for the discovery of effective therapy and personalized medicine for HFpEF.
Exploring the Immunopathogenesis of Pregnancy With COVID-19 at the Vaccination Era
Authors: Lv Dan , Peng Jing , Long Rui , Lin Xingguang , Wang Renjie , Wu Di , He Mengzhou , Liao Shujie , Zhao Yun , Deng Dongrui
Published: July 2021

Since December 2019, Wuhan, China, has experienced an outbreak of coronavirus disease (COVID-19), which is caused by the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2). Pregnant women are deductively considered to be in immunosuppressive condition for the safety of semi-allograft fetuses, which increases the risk of being infected by the virus. In this review, we analyzed the unique immunological characteristics of pregnant women and reviewed their known outcomes at different trimesters from the perspective of underlying mechanisms that have been studied and speculated so far.
Targeting TL1A/DR3 Signaling Offers a Therapeutic Advantage to Neutralizing IL13/IL4Rα in Muco-Secretory Fibrotic Disorders
Authors: Steele Hope , Sachen Kacey , McKnight Andrew J. , Soloff Rachel , Herro Rana
Published: July 2021

Mucus secretion is an important feature of asthma that highly correlates with morbidity. Current therapies, including administration of mucolytics and anti-inflammatory drugs, show limited effectiveness and durability, underscoring the need for novel effective and longer lasting therapeutic approaches. Here we show that mucus production in the lungs is regulated by the TNF superfamily member 15 (TL1A) acting through the mucus–inducing cytokine IL-13. TL1A induces IL13 expression by innate lymphoid cells leading to mucus production, in addition to promoting airway inflammation and fibrosis. Reciprocally, neutralization of IL13 signaling through its receptor (IL4Rα), completely reverses TL1A-induced mucus secretion, while maintaining airway inflammation and fibrosis. Importance of TL1A is further demonstrated using a preclinical asthma model induced by chronic house dust mite exposure where TL1A neutralization by genetic deletion or antagonistic blockade of its receptor DR3 protected against mucus production and fibrosis. Thus, TL1A presents a promising therapeutic target that out benefits IL13 in reversing mucus production, airway inflammation and fibrosis, cardinal features of severe asthma in humans.
Evidence of Local Extinction and Reintroduction of Aedes aegypti in Exeter, California
Authors: Kelly Erin Taylor , Mack Lindsey K. , Campos Melina , Grippin Crystal , Chen Tse-Yu , Romero-Weaver Ana L. , Kosinski Kyle J. , Brisco Katherine K. , Collier Travis C. , Buckner Eva A. , Campbell Lindsay P. , Cornel Anthony J. , Lanzaro Gregory C. , Rosario-Cruz Rodrigo , Smith Kirk , Attardo Geoffrey M. , Lee Yoosook
Published: July 2021

Established populations of Aedes aegypti, a mosquito vector of multiple major arthropod-borne viruses, were first found in three California (CA) cities in 2013. From 2013 to April 2021, Ae. aegypti thwarted almost all control efforts to stop its spread and expanded its range to 308 cities, including Exeter, in 22 counties in CA. Population genomic analyses have suggested that multiple genetically distinct Ae. aegypti populations were introduced into CA. However Ae. aegypti collected for the first time in 2014 in Exeter, appeared to be different from three major genetic clusters found elsewhere in CA. Due to intense control efforts by the Delta Vector Control District (DVCD), Ae. aegypti was thought to have been eliminated from Exeter in 2015. Unfortunately, it was recollected in 2018. It was not clear if the reemergence of Ae. aegypti in Exeter was derived from the bottlenecked remnants of the original 2014 Exeter population or from an independent invasion from a different population derived from surrounding areas. The goal of this work was to determine which of these scenarios occurred (recovery after bottleneck or reintroduction after elimination) and if elimination and reintroduction occurred to identify the origin of the invading population using a population genomic approach. Our results support the reintroduction after elimination hypothesis. The source of reintroduction, however, was unexpectedly from the southern CA cluster rather than from other two geographically closer central CA genetic clusters. We also conducted a knockdown resistance mutation profile, which showed Exeter 2014 had the lowest level of resistant alleles compared to the other populations, could have contributed towards DVCD’s ability to locally eliminate Ae. aegypti in 2014.
Vaginal Calculi in the Eastern North Atlantic Common Dolphins Delphinus Delphis, Induction Mechanisms and Possible Effects on Fecundity
Authors: Dabin Willy , Rochowski Bastien , Daudon Michel , Ridoux Vincent
Published: July 2021

The proper management of cetacean populations requires life history and demographic parameters to be estimated at population level. In this study we focus on a reproductive pathology that has the potential to alter reproductive rate: the vaginal calculi or stones. The present work documents vaginal calculi prevalence and structure in the eastern North Atlantic common dolphin Delphinus delphis in order to infer their likely mechanisms of induction and possible effects on fecundity. The work is based on routine examinations and necropsies of stranded marine mammals reported by the French stranding scheme from 1972 to 2012. Vaginal calculi were described and measured, and their composition was analyzed by Fourrier-Transformed Infra-Red (FTIR) spectroscopy. Necropsies and reproductive tract examinations were performed on 435 female common dolphins since 1972 along the French coasts, of which 14 showed vaginal calculi, representing 3.2% of the examined females. All females with calculi were older than 7, and there was no relationship of calculus size with age. Histopathology revealed lesions due to an inflammatory response to the presence of the calculi: chronicle vaginitis, variable endometritis and cystitis. Calculus size varied from 1 to 21 cm in maximum dimension and 4–1,460 g in mass. Their internal structure was homogeneous, particularly due to the absence of core material, hence corresponding to the definition of primary calculi. All calculus spectra showed almost identical compositions, with struvite (magnesium ammonium phosphate hexahydrate) representing on average 87% of calculus mass. Dysfunction of the uro-genital tract, such as vesico-vaginal fistulae, would be the likely initial pathological condition that led to the formation of these stones. Both the initial chemical condition in the vagina and the resulting formation of a calculi are obstacles to successful reproduction.
Distribution, Temporal Change, and Conservation Status of Tropical Seagrass Beds in Southeast Asia: 2000–2020
Authors: Sudo Kenji , Quiros T. E. Angela L. , Prathep Anchana , Luong Cao Van , Lin Hsing-Juh , Bujang Japar Sidik , Ooi Jillian Lean Sim , Fortes Miguel D. , Zakaria Muta Harah , Yaakub Siti Maryam , Tan Yi Mei , Huang Xiaoping , Nakaoka Masahiro
Published: July 2021

Although Southeast Asia is a hotspot of global seagrass diversity, there are considerable information gaps in the distribution of seagrass beds. Broad-scale seagrass distribution has not been updated in the global seagrass database by UNEP-WCMC since 2000, although studies on seagrasses have been undertaken intensively in each region. Here we analyze the recent distribution of tropical seagrass beds, their temporal changes, causes of decline and conservation status in Southeast Asia (plus southern mainland China, Taiwan and Ryukyu Island of Japan) using data collected after 2000. Based on the 195 literature published since 2000, we identified 1,259 point data and 1,461 polygon data showing the distribution of seagrass beds. A large discrepancy was found in the seagrass bed distribution between our updated data and the UNEP-WCMC database, mostly due to inaccurate and low resolution location information in the latter. Temporal changes in seagrass bed area analyzed for 68 sites in nine countries/regions demonstrated that more than 60% of seagrass beds declined at an average rate of 10.9% year–1, whereas 20% of beds increased at an average rate of 8.1% year–1, leading to an overall average decline of 4.7% year–1. Various types of human-induced threats were reported as causes for the decline, including coastal development, fisheries/aquaculture, and natural factors such as typhoons and tsunamis. The percentage of seagrass beds covered with existing marine protected areas (MPAs) varied greatly among countries/regions, from less than 1% in Brunei Darussalam and Singapore to 100% in southern Japan. However, the degree of conservation regulation was not sufficient even in regions with higher MPA coverage. The percentage of seagrass beds within EBSAs (Ecologically and Biologically Significant Area determined by the Convention of Biological Diversity) was higher than that within MPAs because EBSAs cover a greater area than MPAs. Therefore, designating EBSAs as legally effective MPAs can greatly improve the conservation status of seagrass beds in Southeast Asia.
Avicennia Genetic Diversity and Fine-Scaled Structure Influenced by Coastal Proximity of Mangrove Fragments
Authors: Triest Ludwig , Del Socorro Alieza , Gado Vincent Jay , Mazo Analyn M. , Sierens Tim
Published: July 2021

Avicennia dominated mangrove forests occur from seaward to landward sites and hence are subject to different dynamics within estuarine ecosystems. Regeneration of mangrove forests primarily depends on the extent of propagule spread and subsequent establishment in suitable habitats. The complex nature of estuarine systems induces a wide variety of local conditions for within-site propagule retention and settlement thereby allowing spontaneous regeneration of mangroves. In this study, we estimated the fine-scale spatial genetic structure (FSGS) of Avicennia populations and examined whether their position relative to the seaside or the size of mangrove patches could have influenced the extant local population genetic structure. A kinship-based FSGS was performed using microsatellite markers in 523 A. marina, 189 A. rumphiana and 60 A. alba adult trees of 24 sites in The Philippines. Transects within each estuary were taken both parallel and perpendicular to the coastline or tidal river edge. The extent of local mangrove areas and various human-induced encroachments as such did not show any trend in allele diversity, heterozygosity values or inbreeding levels. However, farther inland situated mangrove patches showed a larger FSGS extent across the neighborhood (up to 75 m) though less diversity along with inbreeding, most likely due to retention of related propagules and lowered chance of external propagule input. Estimation of connectivity along a same coastline stretch supported a unidirectional steppingstone or adjacent migration model for populations of either A. marina, A. alba or A. rumphiana. These were congruent with ocean currents across mangrove estuaries of the Tablas Strait and along Western Leyte, thereby emphasizing the relevance of coastal connectivity for long term persistence. From this study, we conclude that both proximity to open water and narrowness of mangrove patches may affect their captured diversity, inbreeding and fine-scale structure caused by propagule movement within or beyond a local mangrove fragment during recent generations. Higher levels of allele diversity for seaward sites and highest likelihood of migration for adjacent mangroves both add to the importance of coastal connectivity that is the only natural cohesive force on longer term and necessary to counteract short term effects of increasingly encroached mangrove environments.
Predicting Harbor Porpoise Strandings Based on Near-Shore Sightings Indicates Elevated Temporal Mortality Rates
Authors: IJsseldijk Lonneke L. , Camphuysen Kees C. J. , Keijl Guido O. , Troost Gerard , Aarts Geert
Published: July 2021

The increase in anthropogenic activities and their potential impact on wildlife requires the establishment of monitoring programs and identification of indicator species. Within marine habitats, marine mammals are often used as ecosystem sentinels, which has led to investigations into their abundance, distribution, and mortality patterns. However, trends in sightings and strandings are rarely analyzed in combination. This is necessary to distinguish elevated stranding rates caused by changes in local abundance from increased mortality as a consequence of other natural, environmental or anthropogenic factors. Therefore, the objective of this study was to assess whether harbor porpoise (Phocoena phocoena) stranding frequency in the southern North Sea can be explained by local population density derived from more than 400 thousand hours of systematic observations along the Dutch coast between 1990 and 2018. Since the late 1990s, both the number of stranded porpoises and the sighting rate increased rapidly up to around the mid-2000s, after which they remained high, but with large inter-annual fluctuations. On an annual basis there was a strong correlation between porpoise strandings and sightings, but with a seasonal mismatch. Highest stranding rates occur in late summer, while highest sighting rates occur in early spring. Despite low sighting rates in late summer, August appears to be the best predictor for the monthly variation in the number of stranded porpoises, which could be explained by post-reproductive dispersal and mortality. Excessive high porpoise stranding numbers after accounting for variations in local density could signpost unusual mortality events (UMEs). The corrected stranding rates show that in the early 1990s, when porpoise sightings were rare, and after 2010, the number of stranded porpoises exceeds the expected number. Especially in the summer of 2011, the number of dead porpoises found ashore was excessively high and this might reflect an UME. These results demonstrate that a comparative interpretation of marine mammal strandings and coastal sightings can be a valuable management and conservation tool that could provide an early warning signal for population change.
Nature-Based Engineering: A Review on Reducing Coastal Flood Risk With Mangroves
Authors: Gijsman Rik , Horstman Erik M. , van der Wal Daphne , Friess Daniel A. , Swales Andrew , Wijnberg Kathelijne M.
Published: July 2021

Integration of mangroves in projects to reduce coastal flood risk is increasingly being recognised as a sustainable and cost-effective alternative. In addition to the construction of conventional hard flood protection infrastructure, mangroves not only contribute to attenuating flood events (functionality), they also recover in, and adapt to, a changing climate (persistence). The implementation of mangroves in flood risk reduction, however, remains complex. This is because the innate functionality and persistence of mangroves depend on a range of environmental conditions. Importantly, mangroves may collapse when environmental impacts or climatic changes exceed key system thresholds, bringing uncertainty into a situation where failure could endanger lives and livelihoods. The uncertainties in mangrove functionality and persistence can be dealt with by (1) improving insights in how ecological and physical processes affect mangrove functionality and persistence across scales, (2) advancing tools to accurately assess and predict mangrove functionality and persistence, and (3) adopting an adaptive management approach combined with appropriate engineering interventions to enhance mangrove functionality and persistence. Here, we review existing evidence, monitoring techniques and modelling approaches from the viewpoint of mangrove functionality and persistence. Inspired by existing guidelines for Nature-based Solutions (NbS) to reduce flood risk, we provide an operationalization for this new approach. In addition, we identify where further research efforts are required for the practical application of mangroves in coastal flood risk management. Key aspects in the variability and uncertainty of the functionality and persistence of mangroves are their failure and recovery mechanisms, which are greatly site- and storm-specific. We propose five characteristic damage regimes that result in increasing reductions of mangrove functionality as well as post-storm recovery periods. Further research on the quantification of these regimes and their thresholds is required for the successful integration of mangroves in coastal flood risk management. Ultimately, the key challenge is the development of adaptive management strategies to optimise long-term mangrove functionality and persistence, or their resilience. Such adaptive strategies should be informed by continued mangrove functionality and persistence assessments, based on continued monitoring and modelling of key mangrove thresholds, and supported through well-established guidelines.
Physical Activity as an Adjunct to Compression Therapy on Healing Outcomes and Recurrence in Patients With Venous Leg Ulcers: A Scoping Review Protocol
Authors: Qiu Yunjing , Osadnik Christian Robert , Team Victoria , Weller Carolina Dragica
Published: July 2021

Background: Chronic venous leg ulceration is a common and costly clinical issue across the world, affecting up to 3 in 1,000 people. Compression therapy is recommended as the gold standard treatment in clinical practice, although a large number of venous leg ulcers remain unhealed after several years. Physical activity may improve healing although there is limited evidence on the effects of physical activity as an adjuvant treatment to compression to improve venous leg ulcers healing and prevent recurrence.

Objectives: This scoping review protocol aims to systematically search, appraise, and synthesize quantitative research evidence to assess the effect of physical activity interventions applied in conjunction with compression therapy on venous leg ulcer healing and recurrence.

Methods and Analysis: We will use the methodology framework suggested by Arksey and O'Malley, Levac et al., the JBI as a guide. We will also follow the three-step search strategy recommended by the JBI to systematic search for relevant published research, ongoing clinical trials, and grey literature. Two review authors will independently screen titles and abstracts followed by full-text review to determine final eligibility for inclusion. The search process will be reported using a Preferred Reporting Items for Systematic Reviews and Meta-Analyses flow chart. Characteristics of physical activity interventions, primary outcomes related to ulcer healing and recurrence, and secondary outcomes of interest included quality of life, pain level, adverse effects, and economic costs will be extracted and summarized. The review will provide a descriptive account of the findings from included studies. Where appropriate, data will be pooled for a meta-analysis using a random effects model.

Discussion: Physical activity interventions represent a low-cost, potentially useful adjuvant treatment to compression therapy for the management of venous leg ulcers. Several gaps in knowledge remain that are answerable via a targeted scoping review. This protocol outlines the rationale, objectives, and the planned methodology for conducting the study.

Ethics and Dissemination: The scoping review will use data from publicly available sources and ethical approval is not required. Findings from this review will be submitted to a peer-reviewed journal, presented at relevant conferences and disseminated via social media.
Role of Macrophages and Related Cytokines in Kidney Disease
Authors: Cantero-Navarro Elena , Rayego-Mateos Sandra , Orejudo Macarena , Tejedor-Santamaria Lucía , Tejera-Muñoz Antonio , Sanz Ana Belén , Marquez-Exposito Laura , Marchant Vanessa , Santos-Sanchez Laura , Egido Jesús , Ortiz Alberto , Bellon Teresa , Rodrigues-Diez Raúl R. , Ruiz-Ortega Marta
Published: July 2021

Inflammation is a key characteristic of kidney disease, but this immune response is two-faced. In the acute phase of kidney injury, there is an activation of the immune cells to fight against the insult, contributing to kidney repair and regeneration. However, in chronic kidney diseases (CKD), immune cells that infiltrate the kidney play a deleterious role, actively participating in disease progression, and contributing to nephron loss and fibrosis. Importantly, CKD is a chronic inflammatory disease. In early CKD stages, patients present sub-clinical inflammation, activation of immune circulating cells and therefore, anti-inflammatory strategies have been proposed as a common therapeutic target for renal diseases. Recent studies have highlighted the plasticity of immune cells and the complexity of their functions. Among immune cells, monocytes/macrophages play an important role in all steps of kidney injury. However, the phenotype characterization between human and mice immune cells showed different markers; therefore the extrapolation of experimental studies in mice could not reflect human renal diseases. Here we will review the current information about the characteristics of different macrophage phenotypes, mainly focused on macrophage-related cytokines, with special attention to the chemokine CCL18, and its murine functional homolog CCL8, and the macrophage marker CD163, and their role in kidney pathology.
Nitrogen Fertilization and Native C4 Grass Species Alter Abundance, Activity, and Diversity of Soil Diazotrophic Communities
Authors: Hu Jialin , Richwine Jonathan D. , Keyser Patrick D. , Li Lidong , Yao Fei , Jagadamma Sindhu , DeBruyn Jennifer M.
Published: July 2021

Native C4 grasses have become the preferred species for native perennial pastures and bioenergy production due to their high productivity under low soil nitrogen (N) status. One reason for their low N requirement is that C4 grasses may benefit from soil diazotrophs and promote biological N fixation. Our objective was to evaluate the impact of N fertilization rates (0, 67, and 202 kg N ha–1) and grass species (switchgrass [Panicum virgatum] and big bluestem [Andropogon gerardii]) on the abundance, activity, diversity, and community composition of soil diazotrophs over three agricultural seasons (grass green-up, initial harvest, and second harvest) in a field experiment in East Tennessee, United States. Nitrogen fertilization rate had a stronger influence on diazotroph population size and activity (determined by nifH gene and transcript abundances) and community composition (determined by nifH gene amplicon sequencing) than agricultural season or grass species. Excessive fertilization (202 kg N ha–1) resulted in fewer nifH transcripts compared to moderate fertilization (67 kg N ha–1) and decreased both richness and evenness of diazotrophic community, reflecting an inhibitory effect of high N application rates on soil diazotrophic community. Overall, cluster I and cluster III diazotrophs were dominant in this native C4 grass system. Diazotroph population size and activity were directly related to soil water content (SWC) based on structural equation modeling. Soil pH, SWC, and C and N availability were related to the variability of diazotrophic community composition. Our results revealed relationships between soil diazotrophic community and associated soil properties, adding to our understanding of the response of soil diazotrophs to N fertilization and grass species in native C4 grass systems.
Searching for the Secret of Stickiness: How Biofilms Adhere to Surfaces
Authors: Jiang Zhaowei , Nero Thomas , Mukherjee Sampriti , Olson Rich , Yan Jing
Published: July 2021

Bacterial biofilms are communities of cells enclosed in an extracellular polymeric matrix in which cells adhere to each other and to foreign surfaces. The development of a biofilm is a dynamic process that involves multiple steps, including cell-surface attachment, matrix production, and population expansion. Increasing evidence indicates that biofilm adhesion is one of the main factors contributing to biofilm-associated infections in clinics and biofouling in industrial settings. This review focuses on describing biofilm adhesion strategies among different bacteria, including Vibrio cholerae, Pseudomonas aeruginosa, and Staphylococcus aureus. Techniques used to characterize biofilm adhesion are also reviewed. An understanding of biofilm adhesion strategies can guide the development of novel approaches to inhibit or manipulate biofilm adhesion and growth.
A High Starch Diet Alters the Composition of the Intestinal Microbiota of Largemouth Bass Micropterus salmoides, Which May Be Associated With the Development of Enteritis
Authors: Huang Xiaoli , Zhong Liang , Kang Qin , Liu Sha , Feng Yang , Geng Yi , Chen Defang , Ou Yangping , Yang Shiyong , Yin Lizi , Luo Wei
Published: July 2021

Starch is an inexpensive feed ingredient that has been widely used in fish feed. However, starch utilization by carnivorous fish is limited and excess starch is detrimental to the health of the organism. High starch diets often lead to liver damage, but the effects on the intestine are often overlooked. Therefore, in this study, two isonitrogenous and isolipidic semi-pure diets (NC: 0% α-starch, HC: 22% α-starch) were formulated and fed to largemouth bass (Micropterus salmoides) for 45 days. The effects of the high starch diet on the intestine of largemouth bass were comprehensively investigated by intestinal microbiota, histopathology, ultrastructural pathology, and enzymology analyses. Feeding the HC diet did not affect the growth of largemouth bass during the experimental period. However, the high starch diet led to a reduction in the diversity and abundance of intestinal microbiota in largemouth bass, with a significant increase in the abundance of harmful bacteria (Aeromonas) and a decrease in the abundance of beneficial bacteria (Clostridium, Lactobacillus, and Bifidobacterium). Feeding the HC diet caused the development of enteritis, with goblet cell hyperplasia, epithelial necrosis and detachment and inflammatory cell infiltration, and leading to enlarged apical openings and mitochondrial damage in goblet cells. Long-term feeding of the HC diet inhibited intestinal α-amylase activity. changes in the intestinal microbiota, such as an increase in Aeromonas and a decrease in Clostridium, Lactobacillus, and Bifidobacterium, may be closely related to the development of enteritis. Therefore, adding these beneficial bacteria as probiotics may be an effective way to prevent damage to the intestine of largemouth bass from a high carbohydrate diet. Our results suggest reducing the amount of starch added to the largemouth bass diets. This study provides a reference for protecting the largemouth bass gut during modern intensive culture.
The Study of the Germination Dynamics of Plasmopara viticola Oospores Highlights the Presence of Phenotypic Synchrony With the Host
Authors: Maddalena Giuliana , Russo Giuseppe , Toffolatti Silvia L.
Published: July 2021

The plant disease onset is a complex event that occurs when the pathogen and the host encounter in a favorable environment. While the plant–pathogen interaction has been much investigated, little attention has been given to the phenological synchrony of the event, especially when both plant and pathogen overwinter, as in the case of grapevines and the downy mildew agent, the oomycete Plasmopara viticola. Oospores allow this obligate parasite to survive grapevine dormancy and, germinating, produce inoculum for primary infections. During overwintering, environmental factors influence the potential oospore germination. This study aimed at investigating the existence of synchrony between the pathogen and the host by identifying and quantifying the most important factors determining oospore maturation and germination and the relationship existing with grapevine phenology. Generalized linear models (GLM and GLMM) were used to analyze the germination dynamics of the oospores overwintered in controlled and field conditions and incubated in isothermal conditions, and oospore viability tests were carried out at different time points. Results showed that the most indicative parameter to describe the germination dynamics is the time spent by the oospores from the start of overwintering. The oospores overwintered in field showed phenological traits related to grapevine phenology not observed in controlled conditions. In particular, they completed the maturation period by the end of grapevine dormancy and germinated more rapidly at plant sprouting, when grapevine reaches susceptibility. Overall, the oospores proved to be able to modulate their behavior in close relationship with grapevine, showing a great adaptation to the host’s phenology.
Genomic Investigation of Salmonella Isolates Recovered From a Pig Slaughtering Process in Hangzhou, China
Authors: Wu Beibei , Ed-Dra Abdelaziz , Pan Hang , Dong Chenghang , Jia Chenghao , Yue Min
Published: July 2021

The pig industry is the principal source of meat products in China, and the presence of pathogens in pig-borne meat is a crucial threat to public health. Salmonella is the major pathogen associated with pig-borne diseases. However, route surveillance by genomic platforms along the food chain is still limited in China. Here, we conducted a study to evaluate the dynamic prevalence of Salmonella in a pig slaughtering process in Hangzhou, Zhejiang Province, China. Fifty-five of 226 (24.37%) samples were positive for Salmonella; from them, 78 different isolates were selected and subjected to whole genome sequencing followed by bioinformatics analyses to determine serovar distribution, MLST patterns, antimicrobial resistance genes, plasmid replicons, and virulence factors. Moreover, phenotypic antimicrobial resistance was performed using the broth dilution method against 14 antimicrobial agents belonging to 10 antimicrobial classes. Our results showed that samples collected from the dehairing area (66.66%) and the splitting area (57.14%) were the most contaminated. Phenotypic antimicrobial resistance classified 67 of 78 isolates (85.90%) as having multidrug resistance (MDR), while the highest resistance was observed in tetracycline (85.90%; 67/78) followed by ampicillin (84.62%; 66/78), chloramphenicol (71.80%; 56/78), and nalidixic acid (61.54%; 48/78). Additionally, serovar prediction showed the dominance of Salmonella Typhimurium ST19 (51.28%; 40/78) among the 78 studied isolates, while plasmid prediction reported the dominance of IncHI2A_1 (20.51%; 16/78), followed by IncX1_1 (17.95%; 14/78) and IncHI2_1 (11.54%; 9/78). Virulence factor prediction showed the detection of cdtB gene encoding typhoid toxins in two Salmonella Goldcoast ST358 and one Salmonella Typhimurium ST19, while one isolate of Salmonella London ST155 was positive for genes encoding for the siderophore “yersiniabactin” and the gene senB encoding for enterotoxin production. From this study, we conclude that pig slaughterhouses are critical points for the dissemination of virulent and multidrug-resistant Salmonella isolates along the food chain which require the implementation of management systems to control the critical points. Moreover, there is an urgent need for the implementation of the whole genome sequencing platform to monitor the emergence of virulent and multidrug-resistant clones along the food chain.
Different Approaches to Analyze Muscle Fat Replacement With Dixon MRI in Pompe Disease
Authors: Alonso-Jiménez Alicia , Nuñez-Peralta Claudia , Montesinos Paula , Alonso-Pérez Jorge , García Carme , Montiel Elena , Belmonte Izaskun , Pedrosa Irene , Segovia Sonia , Llauger Jaume , Díaz-Manera Jordi
Published: July 2021

Quantitative MRI is an increasingly used method to monitor disease progression in muscular disorders due to its ability to measure changes in muscle fat content (reported as fat fraction) over a short period. Being able to objectively measure such changes is crucial for the development of new treatments in clinical trials. However, the analysis of the images involved continues to be a daunting task because of the time needed. Whether a more specific analysis selecting individual muscles or a global one analyzing the whole thigh or compartments could be a suitable alternative has only been marginally studied. In our study we compare three methods of analysis of 2-point-dixon images in a cohort of 34 patients with late onset Pompe disease followed over a period of one year. We measured fat fraction on MRIs obtained at baseline and at year 1, and we calculated the increment of fat fraction. We correlated the results obtained with the results of muscle function tests to investigate whether the three methods of analysis were equivalent or not. We observed significant differences between the three methods in the estimation of the fat fraction at both baseline and year 1, but no difference was found in the increment in fat fraction between baseline and year 1. When we correlated the fat fraction obtained with each method and the muscle function tests, we found a significant correlation with most tests in all three methods, although in most comparisons the highest correlation coefficient was found with the analysis of individual muscles. We conclude that the fastest strategy of analysis assessing compartments or the whole thigh could be reliable for certain cohorts of patients where the variable to study is the fat increment. In other sorts of studies, an individual muscle approach seems the most reliable technique.