bluuebunny/crossref_metadata_2025 huggingface dataset:
Supplementary Table III from A Squalene-Based Nanomedicine for Oral Treatment of Colon Cancer
Authors: Kotelevets Larissa , Chastre Eric , Caron Joachim , Mougin Julie , Bastian Gerard , Pineau Alain , Walker Francine , Lehy Therese , Desmaële Didier , Couvreur Patrick
Published: April 2023

Supplementary Table III presents the selection of Genes of HT29 colonic cells treated by drugs with Expression Altered at least 2-Fold by SQ-CDDP NP
Supplemental Figures 1 through 5 from Comparative Analysis of Bispecific Antibody and Streptavidin-Targeted Radioimmunotherapy for B-cell Cancers
Authors: Green Damian J. , Frayo Shani L. , Lin Yukang , Hamlin Donald K. , Fisher Darrell R. , Frost Sofia H.L. , Kenoyer Aimee L. , Hylarides Mark D. , Gopal Ajay K. , Gooley Theodore A. , Orozco Johnnie J. , Till Brian G. , O'Steen Shyril , Orcutt Kelly D. , Wilbur D. Scott , Wittrup K. Dane , Press Oliver W.
Published: April 2023

Figures including: Supplemental Figure 1- Dose finding pharmacokinetics. Supplemental Figure 2- Dose finding tissue biodistribution. Supplemental Figure 3- body weight over time in a therapy study. Supplemental Figure 4- blood counts over time in a therapy study. Supplemental Figure 5- fusion protein binding to Ramos and Granta cell lines
Supplementary Figures S1-S6 from Histone H3K27 Trimethylation Modulates 5-Fluorouracil Resistance by Inhibiting PU.1 Binding to the DPYD Promoter
Authors: Wu Rentian , Nie Qian , Tapper Erin E. , Jerde Calvin R. , Dunlap Garrett S. , Shrestha Shikshya , Elraiyah Tarig A. , Offer Steven M. , Diasio Robert B.
Published: April 2023

Relationship between DPYD and EZH2 expression (S1); Inhibition of Ezh2 results in increased DPYD expression and desensitizes cells to 5-FU (S2); H3K27me3 demethylases UTX and Jmjd3 expression in various tissues (S3); H3K27 trimethylation prevented PU.1 binding at the DPYD promoter (S4); Regulating H3K27me3 specifically at the DPYD promoter changed DPYD expression and affected 5-FU sensitivity (S5); Role of Ezh2 in predicting DPYD expression and 5-FU response (S6).
Supplementary Figure S6 from PTEN Signaling in the Postnatal Perivascular Progenitor Niche Drives Medulloblastoma Formation
Authors: Zhu Guo , Rankin Sherri L. , Larson Jon D. , Zhu Xiaoyan , Chow Lionel M.L. , Qu Chunxu , Zhang Jinghui , Ellison David W. , Baker Suzanne J.
Published: April 2023

aCGH of medulloblastoma
Supplementary Materials and Methods from Ablation of miR-10b Suppresses Oncogene-Induced Mammary Tumorigenesis and Metastasis and Reactivates Tumor-Suppressive Pathways
Authors: Kim Jongchan , Siverly Ashley N. , Chen Dahu , Wang Min , Yuan Yuan , Wang Yumeng , Lee Hyemin , Zhang Jinsong , Muller William J. , Liang Han , Gan Boyi , Yang Xianbin , Sun Yutong , You M. James , Ma Li
Published: April 2023

Additional details related to the Materials and Methods section that appears in the main text.
Supplementary Figures S1-S11 from Ablation of miR-10b Suppresses Oncogene-Induced Mammary Tumorigenesis and Metastasis and Reactivates Tumor-Suppressive Pathways
Authors: Kim Jongchan , Siverly Ashley N. , Chen Dahu , Wang Min , Yuan Yuan , Wang Yumeng , Lee Hyemin , Zhang Jinsong , Muller William J. , Liang Han , Gan Boyi , Yang Xianbin , Sun Yutong , You M. James , Ma Li
Published: April 2023

Figure S1. Detection of miR-10b, miR-10a, Hoxd4, and Hoxd3. Figure S2. Body and organ weight. Figure S3. Overall survival and fertility. Figure S4. Complete blood cell count. Figure S5. Organ histology. Figure S6. Mammary tumor cell proliferation. Figure S7. PyMT antibody characterization. Figure S8. miR-10b target screen. Figure S9. TBX5 target identification. Figure S10. TBX5 inhibits breast cancer cell proliferation, migration, and invasion. Figure S11. Clinical correlation.
Supplementary Figure 2 from Protective Role for TWEAK/Fn14 in Regulating Acute Intestinal Inflammation and Colitis-Associated Tumorigenesis
Authors: Di Martino Luca , Dave Maneesh , Menghini Paola , Xin Wei , Arseneau Kristen O. , Pizarro Theresa T. , Cominelli Fabio
Published: April 2023

This supplementary figure describes the effects of Fn14 antibody neutralization in C57/BL6 mice following induction of DSS colitis..
Supplementary Figure Legends from ERK and p38 MAPK Activities Determine Sensitivity to PI3K/mTOR Inhibition via Regulation of MYC and YAP
Authors: Muranen Taru , Selfors Laura M. , Hwang Julie , Gallegos Lisa L. , Coloff Jonathan L. , Thoreen Carson C. , Kang Seong A. , Sabatini David M. , Mills Gordon B. , Brugge Joan S.
Published: April 2023

Legends for Supplementary Figures S1-S4.
Supplementary Tables 1 and 2 and Supplementary Figures 1 through 6 from Alternative Polyadenylation in Triple-Negative Breast Tumors Allows NRAS and c-JUN to Bypass PUMILIO Posttranscriptional Regulation
Authors: Miles Wayne O. , Lembo Antonio , Volorio Angela , Brachtel Elena , Tian Bin , Sgroi Dennis , Provero Paolo , Dyson Nicholas
Published: April 2023

Supp Table 1: APA effected PUM target in breast tumors Supp Table 2: primers and siRNAs used Supp Fig 1: TNBC tumor 3'UTR RT-PCR, FOXO1, E2F4 and PTEN Supp Fig 2: TNBC tumors 3'UTR RT-PCR NRAS Supp Fig 3: TNBC tumors 3'UTR RT-PCR c-JUN Supp Fig 4: NRAS, PTEN and FOXO1 regulation in multiple cell lines Supp Fig 5: NRAS and c-JUN stability assays Supp Fig 6: Regulation of 3'UTR length
Supplemental Figures from v-Src Oncogene Induces Trop2 Proteolytic Activation via Cyclin D1
Authors: Ju Xiaoming , Jiao Xuanmao , Ertel Adam , Casimiro Mathew C. , Di Sante Gabriele , Deng Shengqiong , Li Zhiping , Di Rocco Agnese , Zhan Tingting , Hawkins Adam , Stoyanova Tanya , Andò Sebastiano , Fatatis Alessandro , Lisanti Michael P. , Gomella Leonard G. , Languino Lucia R. , Pestell Richard G.
Published: April 2023

Supplemental Figure 1. Trop2 ICD abundance is maintained by Src kinase. Supplemental Figure 2. Canertinib, a tyrosine kinase inhibitor targeting EGFR reduces cell proliferation but does not affect Trop2 ICD abundance. Supplemental Figure 3. Schematic representation of the mechanism by which Src induction of cyclin D1 enhances cleavage of the membrane associated Trop2 complex to thereby enhance Trop2 ICD. Supplemental Figure 4. Human prostate cancer Tissue Microarray (TMA) IHC staining.
Supplementary methods from Adoptive Transfer of Tumor-Specific Th2 Cells Eradicates Tumors by Triggering an In Situ Inflammatory Immune Response
Authors: Lorvik Kristina Berg , Hammarström Clara , Fauskanger Marte , Haabeth Ole Audun Werner , Zangani Michael , Haraldsen Guttorm , Bogen Bjarne , Corthay Alexandre
Published: April 2023

This file contains the supplementary material and methods: Immunohistochemistry
Supplementary Table S1 from Adoptive Transfer of Tumor-Specific Th2 Cells Eradicates Tumors by Triggering an In Situ Inflammatory Immune Response
Authors: Lorvik Kristina Berg , Hammarström Clara , Fauskanger Marte , Haabeth Ole Audun Werner , Zangani Michael , Haraldsen Guttorm , Bogen Bjarne , Corthay Alexandre
Published: April 2023

This file contains a list of antibodies used for immunohistochemistry staining: Supplementary Table S1
Figure legends for supplemental Figures 1-3 from Adaptive NK Cells with Low TIGIT Expression Are Inherently Resistant to Myeloid-Derived Suppressor Cells
Authors: Sarhan Dhifaf , Cichocki Frank , Zhang Bin , Yingst Ashley , Spellman Stephen R. , Cooley Sarah , Verneris Michael R. , Blazar Bruce R. , Miller Jeffrey S.
Published: April 2023

Figure legends corresponding the the above description.
Supplementary Figure S2 from Adoptive Transfer of Tumor-Specific Th2 Cells Eradicates Tumors by Triggering an In Situ Inflammatory Immune Response
Authors: Lorvik Kristina Berg , Hammarström Clara , Fauskanger Marte , Haabeth Ole Audun Werner , Zangani Michael , Haraldsen Guttorm , Bogen Bjarne , Corthay Alexandre
Published: April 2023

This file contains H/E/S images showing that tumor cells are eliminated within 8 days after Th2 cell transfer: Supplementary Figure S2
Supplementary Table S2 from Gemcitabine Mechanism of Action Confounds Early Assessment of Treatment Response by 3′-Deoxy-3′-[18F]Fluorothymidine in Preclinical Models of Lung Cancer
Authors: Schelhaas Sonja , Held Annelena , Wachsmuth Lydia , Hermann Sven , Honess Davina J. , Heinzmann Kathrin , Smith Donna-Michelle , Griffiths John R. , Faber Cornelius , Jacobs Andreas H.
Published: April 2023

Mean and standard deviation, as well as number of samples analyzed (in brackets), of the data presented in this article.
Supplementary Figure Legend from Adoptive Transfer of Tumor-Specific Th2 Cells Eradicates Tumors by Triggering an In Situ Inflammatory Immune Response
Authors: Lorvik Kristina Berg , Hammarström Clara , Fauskanger Marte , Haabeth Ole Audun Werner , Zangani Michael , Haraldsen Guttorm , Bogen Bjarne , Corthay Alexandre
Published: April 2023

This file contains the legends for the supplementary figures.
Supplementary Figure Legends from Gemcitabine Mechanism of Action Confounds Early Assessment of Treatment Response by 3′-Deoxy-3′-[18F]Fluorothymidine in Preclinical Models of Lung Cancer
Authors: Schelhaas Sonja , Held Annelena , Wachsmuth Lydia , Hermann Sven , Honess Davina J. , Heinzmann Kathrin , Smith Donna-Michelle , Griffiths John R. , Faber Cornelius , Jacobs Andreas H.
Published: April 2023

Legends for Supplementary Figures S1-S5
Supplementary M&M from Chemotherapy-Induced IL34 Enhances Immunosuppression by Tumor-Associated Macrophages and Mediates Survival of Chemoresistant Lung Cancer Cells
Authors: Baghdadi Muhammad , Wada Haruka , Nakanishi Sayaka , Abe Hirotake , Han Nanumi , Putra Wira Eka , Endo Daisuke , Watari Hidemichi , Sakuragi Noriaki , Hida Yasuhiro , Kaga Kichizo , Miyagi Yohei , Yokose Tomoyuki , Takano Atsushi , Daigo Yataro , Seino Ken-ichiro
Published: April 2023

Supplementary materials and methods
Fig. S6 from Chemotherapy-Induced IL34 Enhances Immunosuppression by Tumor-Associated Macrophages and Mediates Survival of Chemoresistant Lung Cancer Cells
Authors: Baghdadi Muhammad , Wada Haruka , Nakanishi Sayaka , Abe Hirotake , Han Nanumi , Putra Wira Eka , Endo Daisuke , Watari Hidemichi , Sakuragi Noriaki , Hida Yasuhiro , Kaga Kichizo , Miyagi Yohei , Yokose Tomoyuki , Takano Atsushi , Daigo Yataro , Seino Ken-ichiro
Published: April 2023

IL-34 expression in cancers
Fig. S3 from Chemotherapy-Induced IL34 Enhances Immunosuppression by Tumor-Associated Macrophages and Mediates Survival of Chemoresistant Lung Cancer Cells
Authors: Baghdadi Muhammad , Wada Haruka , Nakanishi Sayaka , Abe Hirotake , Han Nanumi , Putra Wira Eka , Endo Daisuke , Watari Hidemichi , Sakuragi Noriaki , Hida Yasuhiro , Kaga Kichizo , Miyagi Yohei , Yokose Tomoyuki , Takano Atsushi , Daigo Yataro , Seino Ken-ichiro
Published: April 2023

IL-34-induced AKT activation contributes to survival of chemoresistant lung cancer cells
Supplementary Figures from RNA Sequencing Identifies Transcriptionally Viable Gene Fusions in Esophageal Adenocarcinomas
Authors: Blum Andrew E. , Venkitachalam Srividya , Guo Yan , Kieber-Emmons Ann Marie , Ravi Lakshmeswari , Chandar Apoorva K. , Iyer Prasad G. , Canto Marcia I. , Wang Jean S. , Shaheen Nicholas J. , Barnholtz-Sloan Jill S. , Markowitz Sanford D. , Willis Joseph E. , Shyr Yu , Chak Amitabh , Varadan Vinay , Guda Kishore
Published: April 2023

Contains Supplementary Figures 1-3 as follows: Supplementary Figure 1: Full-length sequence and protein domains of RPS6KB1-VMP1 and OSBPL1A-LAMA3 fusion transcripts identified in EACs Supplementary Figure 2: Somatic copy-number aberrations in the RPS6KB1 and VMP1 genomic locus Supplementary Figure 3: NIH/3T3 transformation assay
Supplemental Figure S3 from The NSL Chromatin-Modifying Complex Subunit KANSL2 Regulates Cancer Stem–like Properties in Glioblastoma That Contribute to Tumorigenesis
Authors: Ferreyra Solari Nazarena E. , Belforte Fiorella S. , Canedo Lucía , Videla-Richardson Guillermo A. , Espinosa Joaquín M. , Rossi Mario , Serna Eva , Riudavets Miguel A. , Martinetto Horacio , Sevlever Gustavo , Perez-Castro Carolina
Published: April 2023

Figure S3. Reduced acetylation on H4K16 in KD-KANSL2 cells.
Supplementary Table 9 from Improving the Performance of Somatic Mutation Identification by Recovering Circulating Tumor DNA Mutations
Authors: Fu Yu , Jovelet Cécile , Filleron Thomas , Pedrero Marion , Motté Nelly , Boursin Yannick , Luo Yufei , Massard Christophe , Campone Mario , Levy Christelle , Diéras Véronique , Bachelot Thomas , Garrabey Julie , Soria Jean-Charles , Lacroix Ludovic , André Fabrice , Lefebvre Celine
Published: April 2023

ctDNA mutations identified by cmDetect for the breast cancer metastatic cases.
Supplementary Table 5 from Improving the Performance of Somatic Mutation Identification by Recovering Circulating Tumor DNA Mutations
Authors: Fu Yu , Jovelet Cécile , Filleron Thomas , Pedrero Marion , Motté Nelly , Boursin Yannick , Luo Yufei , Massard Christophe , Campone Mario , Levy Christelle , Diéras Véronique , Bachelot Thomas , Garrabey Julie , Soria Jean-Charles , Lacroix Ludovic , André Fabrice , Lefebvre Celine
Published: April 2023

Performance summary of somatic mutation calling using Mutect, Mutect+cmDetect, Varscan2, Varscan2+cmDetect with different filters on maximum variant allele read count and frequency in the blood
Supplementary Table 4 from Improving the Performance of Somatic Mutation Identification by Recovering Circulating Tumor DNA Mutations
Authors: Fu Yu , Jovelet Cécile , Filleron Thomas , Pedrero Marion , Motté Nelly , Boursin Yannick , Luo Yufei , Massard Christophe , Campone Mario , Levy Christelle , Diéras Véronique , Bachelot Thomas , Garrabey Julie , Soria Jean-Charles , Lacroix Ludovic , André Fabrice , Lefebvre Celine
Published: April 2023

ctDNA mutations identified in the simulated data set by cmDetect
Supplementary Figures from Cell-Cycle Regulation Accounts for Variability in Ki-67 Expression Levels
Authors: Sobecki Michal , Mrouj Karim , Colinge Jacques , Gerbe François , Jay Philippe , Krasinska Liliana , Dulic Vjekoslav , Fisher Daniel
Published: April 2023

Combined file including 6 supplementary figures. Figure S1 shows clustering analysis of TCGA breast cancer data, related to Fig.2. Figure S2 shows additional bioinformatics analysis data related to Fig 2. Figure S3 shows single cell analysis of cell cycle regulation of Ki-67 expression, related to Fig 3. Figure S4 shows controls for cell cycle arrest for experiments shown in Fig. 5. Figure S5 shows time course of beta-galactosidase activity upon senescence induction in experiment shown in Fig 5. Fig. S6 shows further bioinformatics analysis of CCLE data to correlate Ki-67 expression with drug sensitivity, related to Fig. 6.
Supplementary Table S10 from JARID1B Enables Transit between Distinct States of the Stem-like Cell Population in Oral Cancers
Authors: Facompre Nicole D. , Harmeyer Kayla M. , Sole Xavier , Kabraji Sheheryar , Belden Zachary , Sahu Varun , Whelan Kelly , Tanaka Koji , Weinstein Gregory S. , Montone Kathleen T. , Roesch Alexander , Gimotty Phyllis A. , Herlyn Meenhard , Rustgi Anil K. , Nakagawa Hiroshi , Ramaswamy Sridhar , Basu Devraj
Published: April 2023

Top (most significant) 200 up-regulated gene sets enriched in JARID1Bhigh vs. G0-like LNT14 cells.
Supplementary Table S1 from JARID1B Enables Transit between Distinct States of the Stem-like Cell Population in Oral Cancers
Authors: Facompre Nicole D. , Harmeyer Kayla M. , Sole Xavier , Kabraji Sheheryar , Belden Zachary , Sahu Varun , Whelan Kelly , Tanaka Koji , Weinstein Gregory S. , Montone Kathleen T. , Roesch Alexander , Gimotty Phyllis A. , Herlyn Meenhard , Rustgi Anil K. , Nakagawa Hiroshi , Ramaswamy Sridhar , Basu Devraj
Published: April 2023

Primary antibodies used.
Supplementary Materials and Methods and Supplementary Figure Legends from HTLV-1 Viral Factor HBZ Induces CCR4 to Promote T-cell Migration and Proliferation
Authors: Sugata Kenji , Yasunaga Jun-ichirou , Kinosada Haruka , Mitobe Yuichi , Furuta Rie , Mahgoub Mohamed , Onishi Chiho , Nakashima Kazutaka , Ohshima Koichi , Matsuoka Masao
Published: April 2023

Supplementary materials and methods and supplementary figure legends.
Supplementary Figure 3 from Decreased Mitochondrial Mutagenesis during Transformation of Human Breast Stem Cells into Tumorigenic Cells
Authors: Ahn Eun Hyun , Lee Seung Hyuk , Kim Joon Yup , Chang Chia-Cheng , Loeb Lawrence A.
Published: April 2023

g Score sum graph
Supplementary Figure 2 from HTLV-1 Viral Factor HBZ Induces CCR4 to Promote T-cell Migration and Proliferation
Authors: Sugata Kenji , Yasunaga Jun-ichirou , Kinosada Haruka , Mitobe Yuichi , Furuta Rie , Mahgoub Mohamed , Onishi Chiho , Nakashima Kazutaka , Ohshima Koichi , Matsuoka Masao
Published: April 2023

Correlation between HBZ and CCR4 transcripts (A) or HBZ and GATA3 transcripts (B).
Supplementary document from AIMP2 Controls Intestinal Stem Cell Compartments and Tumorigenesis by Modulating Wnt/β-Catenin Signaling
Authors: Yum Min Kyu , Kang Jong-Seol , Lee Al-Eum , Jo Young-Woo , Seo Ji-Yun , Kim Hyun-A , Kim Yoon-Young , Seong Jinwoo , Lee Eun Byul , Kim Ji-Hoon , Han Jung Min , Kim Sunghoon , Kong Young-Yun
Published: April 2023

Supplemental Materials and Methods and Supplemental figure legends
Supplementary Table 1 from Destabilization of Fatty Acid Synthase by Acetylation Inhibits De Novo Lipogenesis and Tumor Cell Growth
Authors: Lin Huai-Peng , Cheng Zhou-Li , He Ruo-Yu , Song Lei , Tian Meng-Xin , Zhou Li-Sha , Groh Beezly S. , Liu Wei-Ren , Ji Min-Biao , Ding Chen , Shi Ying-Hong , Guan Kun-Liang , Ye Dan , Xiong Yue
Published: April 2023

List of oligonucleotides and primer sequences
Supplementary Figure 2 from AIMP2 Controls Intestinal Stem Cell Compartments and Tumorigenesis by Modulating Wnt/β-Catenin Signaling
Authors: Yum Min Kyu , Kang Jong-Seol , Lee Al-Eum , Jo Young-Woo , Seo Ji-Yun , Kim Hyun-A , Kim Yoon-Young , Seong Jinwoo , Lee Eun Byul , Kim Ji-Hoon , Han Jung Min , Kim Sunghoon , Kong Young-Yun
Published: April 2023

Aimp2+/- mice exhibit increased villi length, crypt depth, and colonic epithelial cell proliferation
Supplementary Figure 1 from AIMP2 Controls Intestinal Stem Cell Compartments and Tumorigenesis by Modulating Wnt/β-Catenin Signaling
Authors: Yum Min Kyu , Kang Jong-Seol , Lee Al-Eum , Jo Young-Woo , Seo Ji-Yun , Kim Hyun-A , Kim Yoon-Young , Seong Jinwoo , Lee Eun Byul , Kim Ji-Hoon , Han Jung Min , Kim Sunghoon , Kong Young-Yun
Published: April 2023

Analysis of polyposis and tumor initiation in Aimp2+/-:ApcMin/+ intestine
Supplementary Figure 2 from Mesothelial Cells Create a Novel Tissue Niche That Facilitates Gastric Cancer Invasion
Authors: Tanaka Masamitsu , Kuriyama Sei , Itoh Go , Maeda Daichi , Goto Akiteru , Tamiya Yutaro , Yanagihara Kazuyoshi , Yashiro Masakazu , Aiba Namiko
Published: April 2023

Cancer cell-released CD63-containing EVs are diffused in the stomach.
Table S1 from FBW7 Loss Promotes Chromosomal Instability and Tumorigenesis via Cyclin E1/CDK2–Mediated Phosphorylation of CENP-A
Authors: Takada Mamoru , Zhang Weiguo , Suzuki Aussie , Kuroda Taruho S. , Yu Zhouliang , Inuzuka Hiroyuki , Gao Daming , Wan Lixin , Zhuang Ming , Hu Lianxin , Zhai Bo , Fry Christopher J. , Bloom Kerry , Li Guohong , Karpen Gary H. , Wei Wenyi , Zhang Qing
Published: April 2023

Table S1: Antibodies used in this paper.
Figure S7 from Androgen Receptor Variants Mediate DNA Repair after Prostate Cancer Irradiation
Authors: Yin Yi , Li Rui , Xu Kangling , Ding Sentai , Li Jeffrey , Baek GuemHee , Ramanand Susmita G. , Ding Sam , Liu Zhao , Gao Yunpeng , Kanchwala Mohammed S. , Li Xiangyi , Hutchinson Ryan , Liu Xihui , Woldu Solomon L. , Xing Chao , Desai Neil B. , Feng Felix Y. , Burma Sandeep , de Bono Johann S. , Dehm Scott M. , Mani Ram S. , Chen Benjamin P.C. , Raj Ganesh V.
Published: April 2023

Role of DNA-PKc in NHEJ DNA repair
Supplementary Methods from Androgens Are Differentially Associated with Ovarian Cancer Subtypes in the Ovarian Cancer Cohort Consortium
Authors: Ose Jennifer , Poole Elizabeth M. , Schock Helena , Lehtinen Matti , Arslan Alan A. , Zeleniuch-Jacquotte Anne , Visvanathan Kala , Helzlsouer Kathy , Buring Julie E. , Lee I-Min , Tjønneland Anne , Dossus Laure , Trichopoulou Antonia , Masala Giovanna , Onland-Moret N. Charlotte , Weiderpass Elisabete , Duell Eric J. , Idahl Annika , Travis Ruth C. , Rinaldi Sabina , Merritt Melissa A. , Trabert Britton , Wentzensen Nicolas , Tworoger Shelley S. , Kaaks Rudolf , Fortner Renée T.
Published: April 2023

Supplementary methods files describes the participating cohorts, study population, and statistical methods in detail.
Supplemental Table 4 from Phosphoproteomic Profiling Reveals ALK and MET as Novel Actionable Targets across Synovial Sarcoma Subtypes
Authors: Fleuren Emmy D.G. , Vlenterie Myrella , van der Graaf Winette T.A. , Hillebrandt-Roeffen Melissa H.S. , Blackburn James , Ma Xiuquan , Chan Howard , Magias Mandy C. , van Erp Anke , van Houdt Laurens , Cebeci Sabri A.S. , van de Ven Amy , Flucke Uta E. , Heyer Erin E. , Thomas David M. , Lord Christopher J. , Marini Kieren D. , Vaghjiani Vijesh , Mercer Tim R. , Cain Jason E. , Wu Jianmin , Versleijen-Jonkers Yvonne M.H. , Daly Roger J.
Published: April 2023

Tyrosine phosphorylation dataset derived from the sarcoma panel
Supplementary Methods from Acquired Immune Resistance Follows Complete Tumor Regression without Loss of Target Antigens or IFNγ Signaling
Authors: Donia Marco , Harbst Katja , van Buuren Marit , Kvistborg Pia , Lindberg Mattias F. , Andersen Rikke , Idorn Manja , Munir Ahmad Shamaila , Ellebæk Eva , Mueller Anja , Fagone Paolo , Nicoletti Ferdinando , Libra Massimo , Lauss Martin , Hadrup Sine Reker , Schmidt Henrik , Andersen Mads Hald , thor Straten Per , Nilsson Jonas A. , Schumacher Ton N. , Seliger Barbara , Jönsson Göran , Svane Inge Marie
Published: April 2023

This file contains supplementary information on the methods used to generate information on the immunology and tumor biology of the patient case
Supplementary Methods and References from Crystal Structure of the Emerging Cancer Target MTHFD2 in Complex with a Substrate-Based Inhibitor
Authors: Gustafsson Robert , Jemth Ann-Sofie , Gustafsson Nina M.S. , Färnegårdh Katarina , Loseva Olga , Wiita Elisée , Bonagas Nadilly , Dahllund Leif , Llona-Minguez Sabin , Häggblad Maria , Henriksson Martin , Andersson Yasmin , Homan Evert , Helleday Thomas , Stenmark Pål
Published: April 2023

Description of additional methods and procedures used in the study. Also includes Supplementary References.
Supplementary Methods from The Alkylating Chemotherapeutic Temozolomide Induces Metabolic Stress in IDH1-Mutant Cancers and Potentiates NAD+ Depletion–Mediated Cytotoxicity
Authors: Tateishi Kensuke , Higuchi Fumi , Miller Julie J. , Koerner Mara V.A. , Lelic Nina , Shankar Ganesh M. , Tanaka Shota , Fisher David E. , Batchelor Tracy T. , Iafrate A. John , Wakimoto Hiroaki , Chi Andrew S. , Cahill Daniel P.
Published: April 2023

Detailed information regarding Creation of Glioma Tumorsphere Lines, Cell culture and Reagents, IDH1-R132H Cell Line Generation, shRNA and control shRNA Cell line Generation, Western Blot Analyses, Cell Viability, Cytotoxicity Analysis and Clonogenicity assay, PARP activity assessment, NAD+ quantitation, Animal Studies and Immunohistochemistry
Supplemental Figure 2 from Aneuploid Cell Survival Relies upon Sphingolipid Homeostasis
Authors: Tang Yun-Chi , Yuwen Hui , Wang Kaiying , Bruno Peter M. , Bullock Kevin , Deik Amy , Santaguida Stefano , Trakala Marianna , Pfau Sarah J. , Zhong Na , Huang Tao , Wang Lan , Clish Clary B. , Hemann Michael T. , Amon Angelika
Published: April 2023

Aneuploidy levels in Bub1b H/H and Cdc20 AAA/AAA MEFs.
Supplemental Figure 1 from Aneuploid Cell Survival Relies upon Sphingolipid Homeostasis
Authors: Tang Yun-Chi , Yuwen Hui , Wang Kaiying , Bruno Peter M. , Bullock Kevin , Deik Amy , Santaguida Stefano , Trakala Marianna , Pfau Sarah J. , Zhong Na , Huang Tao , Wang Lan , Clish Clary B. , Hemann Michael T. , Amon Angelika
Published: April 2023

DL-PDMP does not affect proliferation of MEFs and colorectal cancer cells.
Figure S1, Figure S2, Figure S3, Figure S4, Figure S5 from Identification of New Tumor Suppressor Genes in Triple-Negative Breast Cancer
Authors: Rangel Roberto , Guzman-Rojas Liliana , Kodama Takahiro , Kodama Michiko , Newberg Justin Y. , Copeland Neal G. , Jenkins Nancy A.
Published: April 2023

Figure S1. Expression of ZNF326 a in human breast cancer tissues. The images show a representative scoring intensities following immunostaining with anti-ZNF326 antibody (Range of low, moderate and high). Figure S2. RT-PCR analysis of the candidate cancer genes downregulated by shRNA-pools in the (A) HCC70 and (B) MDA-MB-231 breast cancer cell lines. Figure S3. Stable ZNF326 knockdown in (A) HCC70, (B) HCC1569 and (C) MDA-MB-231 TNBC cell lines using two independent shRNAs was confirmed by qRT-PCR. (D) Ectopic expression of ZNF326 in MDA-MB-231 cells transduced with lentivirus particles expressing ZNF326 cDNA and empty vector (control) respectively. ZNF326 mRNA levels were quantified by qRT-PCR. Figure S4. Western blot analysis of mammosphere cell lysates of HCC70 (A) and MDA-MB-231 (B) with stable shRNA (left panel) and ectopic overexpressing ZNF326 (right panel). Figure S5. Gene expression-based outcome for breast cancer online (GOBO) was used to obtain the expression analysis of (A) DACH1 and (B) GATA3 in different breast cancer subtypes.
Supplementary Information from Label-Free Raman Spectroscopy Detects Stromal Adaptations in Premetastatic Lungs Primed by Breast Cancer
Authors: Paidi Santosh Kumar , Rizwan Asif , Zheng Chao , Cheng Menglin , Glunde Kristine , Barman Ishan
Published: April 2023

Tables listing band assignment for spectral features observed in PC loadings, confusion matrix for PLS-DA derived classification model and results of PLS-DA based leave-one-mouse-out analysis after tissue autofluorescence subtraction; and figure showing radial visualization plot after autofluorescence removal.
Supplementary Data from An Essential Role for the Tumor-Suppressor Merlin in Regulating Fatty Acid Synthesis
Authors: Stepanova Dina S. , Semenova Galina , Kuo Yin-Ming , Andrews Andrew J. , Ammoun Sylwia , Hanemann C. Oliver , Chernoff Jonathan
Published: April 2023

Supplemental files describing metabolic alterations in NF2-deficient cells, supplementary materials and methods, and supportive data regarding the effects of FASN inhibitors or knockdown on various metabolic processes in WT and NF2-deficient cells.
Supplementary Fig. 5 from Adipose Progenitor Cell Secretion of GM-CSF and MMP9 Promotes a Stromal and Immunological Microenvironment That Supports Breast Cancer Progression
Authors: Reggiani Francesca , Labanca Valentina , Mancuso Patrizia , Rabascio Cristina , Talarico Giovanna , Orecchioni Stefania , Manconi Andrea , Bertolini Francesco
Published: April 2023

Supplementary information on metformin experiments
Supplementary Fig. 3 from Adipose Progenitor Cell Secretion of GM-CSF and MMP9 Promotes a Stromal and Immunological Microenvironment That Supports Breast Cancer Progression
Authors: Reggiani Francesca , Labanca Valentina , Mancuso Patrizia , Rabascio Cristina , Talarico Giovanna , Orecchioni Stefania , Manconi Andrea , Bertolini Francesco
Published: April 2023

Up-regulation of murine GM-CSF and MMP9 in vivo in WAT progenitors from MMTV-PyMT mice
Supplementary Fig. 2 from Adipose Progenitor Cell Secretion of GM-CSF and MMP9 Promotes a Stromal and Immunological Microenvironment That Supports Breast Cancer Progression
Authors: Reggiani Francesca , Labanca Valentina , Mancuso Patrizia , Rabascio Cristina , Talarico Giovanna , Orecchioni Stefania , Manconi Andrea , Bertolini Francesco
Published: April 2023

Additional results from xenograft TNBC models.
Table S1 from Long Noncoding RNA MALAT1 Promotes Hepatocellular Carcinoma Development by SRSF1 Upregulation and mTOR Activation
Authors: Malakar Pushkar , Shilo Asaf , Mogilevsky Adi , Stein Ilan , Pikarsky Eli , Nevo Yuval , Benyamini Hadar , Elgavish Sharona , Zong Xinying , Prasanth Kannanganattu V. , Karni Rotem
Published: April 2023

Table S1: List of primers oligos and siRNAs
Supplementary Methods from RORγt+ Innate Lymphoid Cells Promote Lymph Node Metastasis of Breast Cancers
Authors: Irshad Sheeba , Flores-Borja Fabian , Lawler Katherine , Monypenny James , Evans Rachel , Male Victoria , Gordon Peter , Cheung Anthony , Gazinska Patrycja , Noor Farzana , Wong Felix , Grigoriadis Anita , Fruhwirth Gilbert O. , Barber Paul R. , Woodman Natalie , Patel Dominic , Rodriguez-Justo Manuel , Owen Julie , Martin Stewart G. , Pinder Sarah E. , Gillett Cheryl E. , Poland Simon P. , Ameer-Beg Simon , McCaughan Frank , Carlin Leo M. , Hasan Uzma , Withers David R. , Lane Peter , Vojnovic Borivoj , Quezada Sergio A. , Ellis Paul , Tutt Andrew N.J. , Ng Tony
Published: April 2023

Supplementary Methods described
Supplementary Data from A Novel Inhibitor Targets Both Wnt Signaling and ATM/p53 in Colorectal Cancer
Authors: Cheng Jiongjia , Dwyer Mary , Okolotowicz Karl J. , Mercola Mark , Cashman John R.
Published: April 2023

Supplementary Materials and Methods, Table S1-S6 and Figure S1-S9
Figure S3 from miR-590-3p Promotes Ovarian Cancer Growth and Metastasis via a Novel FOXA2–Versican Pathway
Authors: Salem Mohamed , O'Brien Jacob A. , Bernaudo Stefanie , Shawer Heba , Ye Gang , Brkić Jelena , Amleh Asma , Vanderhyden Barbara C. , Refky Basel , Yang Burton B. , Krylov Sergey N. , Peng Chun
Published: April 2023

Regulation of FOXA2 by miR-590-3p and effects of FOXA2 on cell invasion and VCAN expression.
Figure S2 from miR-590-3p Promotes Ovarian Cancer Growth and Metastasis via a Novel FOXA2–Versican Pathway
Authors: Salem Mohamed , O'Brien Jacob A. , Bernaudo Stefanie , Shawer Heba , Ye Gang , Brkić Jelena , Amleh Asma , Vanderhyden Barbara C. , Refky Basel , Yang Burton B. , Krylov Sergey N. , Peng Chun
Published: April 2023

Generation of EOC cell lines stably over expressing mir-590 and the effect of mir-590 over expression on colony formation
Supplemental Figures 1-7 from Specific Targeting of MTAP-Deleted Tumors with a Combination of 2′-Fluoroadenine and 5′-Methylthioadenosine
Authors: Tang Baiqing , Lee Hyung-Ok , An Serim S. , Cai Kathy Q. , Kruger Warren D.
Published: April 2023

Data showing that MTA does not protect against 6TG toxicity.
Supplementary Figure S5 from Extracellular Citrate Affects Critical Elements of Cancer Cell Metabolism and Supports Cancer Development In Vivo
Authors: Mycielska Maria E. , Dettmer Katja , Rümmele Petra , Schmidt Katharina , Prehn Cornelia , Milenkovic Vladimir M. , Jagla Wolfgang , Madej Gregor M. , Lantow Margareta , Schladt Moritz , Cecil Alexander , Koehl Gudrun E. , Eggenhofer Elke , Wachsmuth Christian J. , Ganapathy Vadivel , Schlitt Hans J. , Kunzelmann Karl , Ziegler Christine , Wetzel Christian H. , Gaumann Andreas , Lang Sven A. , Adamski Jerzy , Oefner Peter J. , Geissler Edward K.
Published: April 2023

Method description for metabolomics analysis from Fig. 4B.
Movie S3 from An Oncolytic Virus Expressing a T-cell Engager Simultaneously Targets Cancer and Immunosuppressive Stromal Cells
Authors: Freedman Joshua D. , Duffy Margaret R. , Lei-Rossmann Janet , Muntzer Alice , Scott Eleanor M. , Hagel Joachim , Campo Leticia , Bryant Richard J. , Verrill Clare , Lambert Adam , Miller Paul , Champion Brian R. , Seymour Leonard W. , Fisher Kerry D.
Published: April 2023

Time-lapse sequence of EnAd-CMV-FAPBiTE-mediated cytotoxicity of DLD and NHDF cells.
Movie S2 from An Oncolytic Virus Expressing a T-cell Engager Simultaneously Targets Cancer and Immunosuppressive Stromal Cells
Authors: Freedman Joshua D. , Duffy Margaret R. , Lei-Rossmann Janet , Muntzer Alice , Scott Eleanor M. , Hagel Joachim , Campo Leticia , Bryant Richard J. , Verrill Clare , Lambert Adam , Miller Paul , Champion Brian R. , Seymour Leonard W. , Fisher Kerry D.
Published: April 2023

Time-lapse sequence of EnAd-mediated cytotoxicity of DLD cells.
Supplementary Video S2. from Therapeutic Targeting of Sunitinib-Induced AR Phosphorylation in Renal Cell Carcinoma
Authors: Adelaiye-Ogala Remi , Damayanti Nur P. , Orillion Ashley R. , Arisa Sreevani , Chintala Sreenivasulu , Titus Mark A. , Kao Chinghai , Pili Roberto
Published: April 2023

Enzalutamide prevents Sunitinib induced AR nuclear localization. Real-time fluorescence live cell imaging of 786-0 cells expressing AR-EGFP pretreated with 500 nM Enzalutamide for 30 minutes does not show increase in AR nuclear localization following Sunitinib treatment (5uM Sunitinib t=30s).
Supplementary Figure S3 from TNFRSF19 Inhibits TGFβ Signaling through Interaction with TGFβ Receptor Type I to Promote Tumorigenesis
Authors: Deng Chengcheng , Lin Yu-Xin , Qi Xue-Kang , He Gui-Ping , Zhang Yuchen , Zhang Hao-Jiong , Xu Miao , Feng Qi-Sheng , Bei Jin-Xin , Zeng Yi-Xin , Feng Lin
Published: April 2023

Supplementary Figure S3 from TNFRSF19 Inhibits TGFβ Signaling through Interaction with TGFβ Receptor Type I to Promote Tumorigenesis
Supplementary Figures from Therapeutic Targeting of Sunitinib-Induced AR Phosphorylation in Renal Cell Carcinoma
Authors: Adelaiye-Ogala Remi , Damayanti Nur P. , Orillion Ashley R. , Arisa Sreevani , Chintala Sreenivasulu , Titus Mark A. , Kao Chinghai , Pili Roberto
Published: April 2023

Enzalutamide modulates the protein expression of sunitinib-induced AR regulated genes.
Figure S2 from Evaluation of Explant Responses to STING Ligands: Personalized Immunosurgical Therapy for Head and Neck Squamous Cell Carcinoma
Authors: Baird Jason R. , Bell R. Bryan , Troesch Victoria , Friedman David , Bambina Shelly , Kramer Gwen , Blair Tiffany C. , Medler Terry , Wu Yaping , Sun Zhaoyu , de Gruijl Tanja D. , van de Ven Rieneke , Leidner Rom S. , Crittenden Marka R. , Gough Michael J.
Published: April 2023

Cytokine production from human tumor explants
Supplementary table 6 from A Mutant p53-Dependent Embryonic Stem Cell Gene Signature Is Associated with Augmented Tumorigenesis of Stem Cells
Authors: Koifman Gabriela , Shetzer Yoav , Eizenberger Shay , Solomon Hilla , Rotkopf Ron , Molchadsky Alina , Lonetto Giuseppe , Goldfinger Naomi , Rotter Varda
Published: April 2023

The MSC-TLs ESC signature derived genes are associated with poor patient survival. Kaplan-Meier analyses of the indicated data sets showing significant relationship between expression levels of genes, derived from the MSC-TLs ESC signature, and patient survival. Supplementary
Table 1 from TRIM59 Promotes Gliomagenesis by Inhibiting TC45 Dephosphorylation of STAT3
Authors: Sang Youzhou , Li Yanxin , Song Lina , Alvarez Angel A. , Zhang Weiwei , Lv Deguan , Tang Jianming , Liu Feng , Chang Zhijie , Hatakeyama Shigetsugu , Hu Bo , Cheng Shi-Yuan , Feng Haizhong
Published: April 2023

Primers for qPCR
Supplementary Table S2 from Replication Protein A Availability during DNA Replication Stress Is a Major Determinant of Cisplatin Resistance in Ovarian Cancer Cells
Authors: Bélanger François , Fortier Emile , Dubé Maxime , Lemay Jean-François , Buisson Rémi , Masson Jean-Yves , Elsherbiny Abdelhamid , Costantino Santiago , Carmona Euridice , Mes-Masson Anne-Marie , Wurtele Hugo , Drobetsky Elliot
Published: April 2023

Supplementary Table S2 presents the LD50 values of different genotoxic agents compared to NER efficiency in ovarian cancer cell lines.
Figure S3 from The Autotaxin—Lysophosphatidic Acid Axis Promotes Lung Carcinogenesis
Authors: Magkrioti Christiana , Oikonomou Nikos , Kaffe Eleanna , Mouratis Marios-Angelos , Xylourgidis Nikos , Barbayianni Iliana , Megadoukas Petros , Harokopos Vaggelis , Valavanis Christos , Chun Jerold , Kosma Alexandra , Stathopoulos Georgios T. , Bouros Evangelos , Bouros Demosthenes , Syrigos Konstantinos , Aidinis Vassilis
Published: April 2023

ATX staining in two mouse lung cancer models
Figure S2 from The Autotaxin—Lysophosphatidic Acid Axis Promotes Lung Carcinogenesis
Authors: Magkrioti Christiana , Oikonomou Nikos , Kaffe Eleanna , Mouratis Marios-Angelos , Xylourgidis Nikos , Barbayianni Iliana , Megadoukas Petros , Harokopos Vaggelis , Valavanis Christos , Chun Jerold , Kosma Alexandra , Stathopoulos Georgios T. , Bouros Evangelos , Bouros Demosthenes , Syrigos Konstantinos , Aidinis Vassilis
Published: April 2023

Decreased ENPP2 mRNA expression in human lung cancer
Supplementary Figure S2A-F from Preclinical Evaluation of the Hsp70 Peptide Tracer TPP-PEG24-DFO[89Zr] for Tumor-Specific PET/CT Imaging
Authors: Stangl Stefan , Tei Lorenzo , De Rose Francesco , Reder Sybille , Martinelli Jonathan , Sievert Wolfgang , Shevtsov Maxim , Öllinger Rupert , Rad Roland , Schwaiger Markus , D'Alessandria Calogero , Multhoff Gabriele
Published: April 2023

LC-MS trace and ESI-MS spectrum of TPP-DFO, Mal-PEG24-DFO, TPP-PEG24-DFO, TPP-PEG24-DFO-natZr, Mal-PEG24-FITC, and TPP-PEG24-FITC
supplementary methods from miRNA-30 Family Members Inhibit Breast Cancer Invasion, Osteomimicry, and Bone Destruction by Directly Targeting Multiple Bone Metastasis–Associated Genes
Authors: Croset Martine , Pantano Francesco , Kan Casina W.S. , Bonnelye Edith , Descotes Françoise , Alix-Panabières Catherine , Lecellier Charles-Henri , Bachelier Richard , Allioli Nathalie , Hong Saw-See , Bartkowiak Kai , Pantel Klaus , Clézardin Philippe
Published: April 2023

Description of (1) retroviral vector constructs, (2) ShRNA design sequences, (3) psiCHECK-2 vector constructs, (4) co-culture of breast tumor cells with osteoblasts, (5) breast cancer cohort of patients, (6) miRNA quantification in primary tumor of breast cancer patients and (7) miRNA profiling of breast cancer cell lines.
Figures S1 to S11 from miRNA-30 Family Members Inhibit Breast Cancer Invasion, Osteomimicry, and Bone Destruction by Directly Targeting Multiple Bone Metastasis–Associated Genes
Authors: Croset Martine , Pantano Francesco , Kan Casina W.S. , Bonnelye Edith , Descotes Françoise , Alix-Panabières Catherine , Lecellier Charles-Henri , Bachelier Richard , Allioli Nathalie , Hong Saw-See , Bartkowiak Kai , Pantel Klaus , Clézardin Philippe
Published: April 2023

Figure S1 shows Mesenchymal traits of human MDA-B02 and BC-M1 breast cancer cells. Figure S2 shows Quantitative RT-PCR measurements of miR-30 expression levels. Figure S3 shows Quantification of absolute amounts of miR-30s. Figure S4 shows Stable overexpression of miR-30 family members in human MDA-B02 breast cancer cells. Figure S5 shows miR-30s expression in MDA-B02 and BC-M1 breast cancer cells. Figure S6 shows Western blot analyses. Figure S7 shows that CDH11 is a target for repression by miR-30s. Figure S8 shows Interaction of MDA-MB-231 and Hs-578T silenced for CDH11 with MC3T3-E1 osteoblasts. Figure S9 shows ITGB3 and CTGF are direct targets for repression by miR-30s. Figure S10 shows Putative binding sites between miR-30s and the ITGA5 3'UTR. Figure S11 shows effects of miR-30s on MCF-7 tumor cell colonization of the bone marrow ex vivo.
Figure S3 from Ribonucleotide Excision Repair Is Essential to Prevent Squamous Cell Carcinoma of the Skin
Authors: Hiller Björn , Hoppe Anja , Haase Christa , Hiller Christina , Schubert Nadja , Müller Werner , Reijns Martin A.M. , Jackson Andrew P. , Kunkel Thomas A. , Wenzel Jörg , Behrendt Rayk , Roers Axel
Published: April 2023

Spontaneous DNA damage response and neoplastic ulcerations in Rnaseh2EKO mice.
Table S1. from Glycoprotein nmb Is Exposed on the Surface of Dormant Breast Cancer Cells and Induces Stem Cell–like Properties
Authors: Chen Chen , Okita Yukari , Watanabe Yukihide , Abe Fumie , Fikry Muhammad Ali , Ichikawa Yumu , Suzuki Hiroyuki , Shibuya Akira , Kato Mitsuyasu
Published: April 2023

Primers for real-time qPCR
Table S6 from A Transcriptome-Wide Association Study Among 97,898 Women to Identify Candidate Susceptibility Genes for Epithelial Ovarian Cancer Risk
Authors: Lu Yingchang , Beeghly-Fadiel Alicia , Wu Lang , Guo Xingyi , Li Bingshan , Schildkraut Joellen M. , Im Hae Kyung , Chen Yian A. , Permuth Jennifer B. , Reid Brett M. , Teer Jamie K. , Moysich Kirsten B. , Andrulis Irene L. , Anton-Culver Hoda , Arun Banu K. , Bandera Elisa V. , Barkardottir Rosa B. , Barnes Daniel R. , Benitez Javier , Bjorge Line , Brenton James , Butzow Ralf , Caldes Trinidad , Caligo Maria A. , Campbell Ian , Chang-Claude Jenny , Claes Kathleen B.M. , Couch Fergus J. , Cramer Daniel W. , Daly Mary B. , deFazio Anna , Dennis Joe , Diez Orland , Domchek Susan M. , Dörk Thilo , Easton Douglas F. , Eccles Diana M. , Fasching Peter A. , Fortner Renée T. , Fountzilas George , Friedman Eitan , Ganz Patricia A. , Garber Judy , Giles Graham G. , Godwin Andrew K. , Goldgar David E. , Goodman Marc T. , Greene Mark H. , Gronwald Jacek , Hamann Ute , Heitz Florian , Hildebrandt Michelle A.T. , Høgdall Claus K. , Hollestelle Antoinette , Hulick Peter J. , Huntsman David G. , Imyanitov Evgeny N. , Isaacs Claudine , Jakubowska Anna , James Paul , Karlan Beth Y. , Kelemen Linda E. , Kiemeney Lambertus A. , Kjaer Susanne K. , Kwong Ava , Le Nhu D. , Leslie Goska , Lesueur Fabienne , Levine Douglas A. , Mattiello Amalia , May Taymaa , McGuffog Lesley , McNeish Iain A. , Merritt Melissa A. , Modugno Francesmary , Montagna Marco , Neuhausen Susan L. , Nevanlinna Heli , Nielsen Finn C. , Nikitina-Zake Liene , Nussbaum Robert L. , Offit Kenneth , Olah Edith , Olopade Olufunmilayo I. , Olson Sara H. , Olsson Håkan , Osorio Ana , Park Sue K. , Parsons Michael T. , Peeters Petra H.M. , Pejovic Tanja , Peterlongo Paolo , Phelan Catherine M. , Pujana Miquel Angel , Ramus Susan J. , Rennert Gad , Risch Harvey , Rodriguez Gustavo C. , Rodríguez-Antona Cristina , Romieu Isabelle , Rookus Matti A. , Rossing Mary Anne , Rzepecka Iwona K. , Sandler Dale P. , Schmutzler Rita K. , Setiawan Veronica W. , Sharma Priyanka , Sieh Weiva , Simard Jacques , Singer Christian F. , Song Honglin , Southey Melissa C. , Spurdle Amanda B. , Sutphen Rebecca , Swerdlow Anthony J. , Teixeira Manuel R. , Teo Soo H. , Thomassen Mads , Tischkowitz Marc , Toland Amanda E. , Trichopoulou Antonia , Tung Nadine , Tworoger Shelley S. , van Rensburg Elizabeth J. , Vanderstichele Adriaan , Vega Ana , Edwards Digna Velez , Webb Penelope M. , Weitzel Jeffrey N. , Wentzensen Nicolas , White Emily , Wolk Alicja , Wu Anna H. , Yannoukakos Drakoulis , Zorn Kristin K. , Gayther Simon A. , Antoniou Antonis C. , Berchuck Andrew , Goode Ellen L. , Chenevix-Trench Georgia , Sellers Thomas A. , Pharoah Paul D.P. , Zheng Wei , Long Jirong
Published: April 2023

Association results between associated genes with P < P < 2.21E-6 and risk of different histotypes of epithelial ovarian cancer.
Supplementary Figure 2 from The EGFR T790M Mutation Is Acquired through AICDA-Mediated Deamination of 5-Methylcytosine following TKI Treatment in Lung Cancer
Authors: El Kadi Najwa , Wang Luo , Davis April , Korkaya Hasan , Cooke Alexander , Vadnala Varun , Brown Noah A. , Betz Bryan L. , Cascalho Marilia , Kalemkerian Gregory P. , Hassan Khaled A.
Published: April 2023

Sensitivity of T790M ddPCR assay.
Figure S1 from S100A10 Is a Critical Mediator of GAS6/AXL–Induced Angiogenesis in Renal Cell Carcinoma
Authors: Xiao Yiren , Zhao Hongjuan , Tian Lei , Nolley Rosalie , Diep Anh N. , Ernst Anne , Fuh Katherine C. , Miao Yu Rebecca , von Eyben Rie , Leppert John T. , Brooks James D. , Peehl Donna M. , Giaccia Amato J. , Rankin Erinn B.
Published: April 2023

Genetic inactivation of AXL does not affect tumor cell proliferation or survival in vitro.
Movie S3 from Cancer Exacerbates Chemotherapy-Induced Sensory Neuropathy
Authors: Housley Stephen N. , Nardelli Paul , Carrasco Dario I. , Rotterman Travis M. , Pfahl Emily , Matyunina Lilya V. , McDonald John F. , Cope Timothy C.
Published: April 2023

Uneven ladder walking of ApcPirc/++OX rats.
Supplementary Data 1 from Blockade of a Laminin-411–Notch Axis with CRISPR/Cas9 or a Nanobioconjugate Inhibits Glioblastoma Growth through Tumor-Microenvironment Cross-talk
Authors: Sun Tao , Patil Rameshwar , Galstyan Anna , Klymyshyn Dmytro , Ding Hui , Chesnokova Alexandra , Cavenee Webster K. , Furnari Frank B. , Ljubimov Vladimir A. , Shatalova Ekaterina S. , Wagner Shawn , Li Debiao , Mamelak Adam N. , Bannykh Serguei I. , Patil Chirag G. , Rudnick Jeremy D. , Hu Jethro , Grodzinski Zachary B. , Rekechenetskiy Arthur , Falahatian Vida , Lyubimov Alexander V. , Chen Yongmei L. , Leoh Lai S. , Daniels-Wells Tracy R. , Penichet Manuel L. , Holler Eggehard , Ljubimov Alexander V. , Black Keith L. , Ljubimova Julia Y.
Published: April 2023

Tables S1, S2 and S3, and Figure S1. List of used antibodies (Table S1), and immunohistochemical expression of laminin-411 and laminin-421 in human gliomas of various grades (Tables S2 and S3). Expression of laminin-411 vs. laminin-421 increases with glioma grade and in GBMs it correlates with shorter patient survival and faster tumor recurrence (Figure S1)
Movie S2 from Cancer Exacerbates Chemotherapy-Induced Sensory Neuropathy
Authors: Housley Stephen N. , Nardelli Paul , Carrasco Dario I. , Rotterman Travis M. , Pfahl Emily , Matyunina Lilya V. , McDonald John F. , Cope Timothy C.
Published: April 2023

Uneven ladder walking of an ApcPirc/++control rat.
Supplementary Figure 5 from Secretion of Acid Sphingomyelinase and Ceramide by Endothelial Cells Contributes to Radiation-Induced Intestinal Toxicity
Authors: Leonetti Daniela , Estéphan Hala , Ripoche Natacha , Dubois Nolwenn , Aguesse Audrey , Gouard Sébastien , Brossard Lisa , Chiavassa Sophie , Corre Isabelle , Pecqueur Claire , Neunlist Michel , Hadchity Elie , Gaugler Marie-Hélène , Mahé Maxime M. , Paris François
Published: April 2023

SupFigure5
Figure S8 from Cancer Exacerbates Chemotherapy-Induced Sensory Neuropathy
Authors: Housley Stephen N. , Nardelli Paul , Carrasco Dario I. , Rotterman Travis M. , Pfahl Emily , Matyunina Lilya V. , McDonald John F. , Cope Timothy C.
Published: April 2023

Relationship between DEG and biologic processes
Figure S21 from Cancer Exacerbates Chemotherapy-Induced Sensory Neuropathy
Authors: Housley Stephen N. , Nardelli Paul , Carrasco Dario I. , Rotterman Travis M. , Pfahl Emily , Matyunina Lilya V. , McDonald John F. , Cope Timothy C.
Published: April 2023

Cancer and chemotherapy interaction does not lead to electrophysiological evidence of degeneration
Figure S2 from ATM Paradoxically Promotes Oncogenic Transformation via Transcriptional Reprogramming
Authors: Liu Xinjian , Hu Mengjie , Liu Pei , Jiao Meng , Zhou Min , Lee Andrew K. , Li Fang , Li Chuan-Yuan
Published: April 2023

Additional data on oncogene-induced transformation of HFF cells.
Figure S4 from LIN9 and NEK2 Are Core Regulators of Mitotic Fidelity That Can Be Therapeutically Targeted to Overcome Taxane Resistance
Authors: Roberts Melyssa S. , Sahni Jennifer M. , Schrock Morgan S. , Piemonte Katrina M. , Weber-Bonk Kristen L. , Seachrist Darcie D. , Avril Stefanie , Anstine Lindsey J. , Singh Salendra , Sizemore Steven T. , Varadan Vinay , Summers Matthew K. , Keri Ruth A.
Published: April 2023

NEK2 expression dictates relapse-free survival and is upregulated in paclitaxel resistant cells.
Figure S3 from LIN9 and NEK2 Are Core Regulators of Mitotic Fidelity That Can Be Therapeutically Targeted to Overcome Taxane Resistance
Authors: Roberts Melyssa S. , Sahni Jennifer M. , Schrock Morgan S. , Piemonte Katrina M. , Weber-Bonk Kristen L. , Seachrist Darcie D. , Avril Stefanie , Anstine Lindsey J. , Singh Salendra , Sizemore Steven T. , Varadan Vinay , Summers Matthew K. , Keri Ruth A.
Published: April 2023

Suppression of LIN9 by BETi synergistically increases taxane sensitivity, mitotic progression errors, and apoptosis in vitro.
Figure S2 from LIN9 and NEK2 Are Core Regulators of Mitotic Fidelity That Can Be Therapeutically Targeted to Overcome Taxane Resistance
Authors: Roberts Melyssa S. , Sahni Jennifer M. , Schrock Morgan S. , Piemonte Katrina M. , Weber-Bonk Kristen L. , Seachrist Darcie D. , Avril Stefanie , Anstine Lindsey J. , Singh Salendra , Sizemore Steven T. , Varadan Vinay , Summers Matthew K. , Keri Ruth A.
Published: April 2023

LIN9 maintains chromosomal stability.
Supplementary Data from Dysregulation of Glutamate Transport Enhances Treg Function That Promotes VEGF Blockade Resistance in Glioblastoma
Authors: Long Yu , Tao Haipeng , Karachi Aida , Grippin Adam J. , Jin Linchun , Chang Yifan (Emily) , Zhang Wang , Dyson Kyle A. , Hou Alicia Y. , Na Meng , Deleyrolle Loic P. , Sayour Elias J. , Rahman Maryam , Mitchell Duane A. , Lin Zhiguo , Huang Jianping
Published: April 2023

Suppl Materials and Figures