bluuebunny/crossref_metadata_2025 huggingface dataset:
Fig S5. from miR-192-5p Silencing by Genetic Aberrations Is a Key Event in Hepatocellular Carcinomas with Cancer Stem Cell Features
Authors: Gu Yuanzhuo , Wei Xiyang , Sun Yulin , Gao Hongjun , Zheng Xin , Wong Linda L. , Jin Ling , Liu Niya , Hernandez Brenda , Peplowska Karolina , Zhao Xiaohang , Zhan Qi-Min , Feng Xin-Hua , Tang Zhao-You , Ji Junfang
Published: April 2023

Tumorigenicity assay of HuH7 cells with altered miR-192-5p and PABPC4.
Supplementary Data from Mcl-1 Interacts with Akt to Promote Lung Cancer Progression
Authors: Chen Guo , Park Dongkyoo , Magis Andrew T. , Behera Madhusmita , Ramalingam Suresh S. , Owonikoko Taofeek K. , Sica Gabriel L. , Ye Keqiang , Zhang Chao , Chen Zhengjia , Curran Walter J. , Deng Xingming
Published: April 2023

Supplementary Figure 1. Knockout of Mcl-1 from H1299 by CRISPR/Cas9 system results in decreased cell proliferation and increased caspase 3/7 activity. Supplementary Figure 2. Expression of constitutive active form of Akt in H1299 Mcl-1 knockout cells restores cell growth. Supplementary Figure 3. Depletion of Mcl-1 by shRNA retards the growth of H460 lung xenografts. Supplementary Figure 4. Expression of WT Mcl-1 but not the PEST deletion mutant Mcl-1 in H1299 Mcl-1 knockout cells restores Akt/PDK1 and Akt/mTORC2 interactions. Supplementary Figure 5. Treatment of H1299 cells with PH-687 results in increased intramolecular PH/KD interactions in Akt and decreased interaction of Akt with PDK1 or mTORC2. Supplementary Figure 6. Mcl-1/Akt signaling pathway is essential for PH-687 inhibition of cancer cell growth. Supplementary Figure 7. Knockout of Mcl-1 or treatment of cells with PH-687 inhibits growth factor (s)-stimulated Akt activation. Supplementary Figure 8. In vivo toxicity analysis. Supplementary Methods
Fig S2. from miR-192-5p Silencing by Genetic Aberrations Is a Key Event in Hepatocellular Carcinomas with Cancer Stem Cell Features
Authors: Gu Yuanzhuo , Wei Xiyang , Sun Yulin , Gao Hongjun , Zheng Xin , Wong Linda L. , Jin Ling , Liu Niya , Hernandez Brenda , Peplowska Karolina , Zhao Xiaohang , Zhan Qi-Min , Feng Xin-Hua , Tang Zhao-You , Ji Junfang
Published: April 2023

The lower level of miR-192-5p was associated with poor prognosis of HCC patients.
Supplementary Table S3 from EN1 Is a Transcriptional Dependency in Triple-Negative Breast Cancer Associated with Brain Metastasis
Authors: Peluffo Guillermo , Subedee Ashim , Harper Nicholas W. , Kingston Natalie , Jovanović Bojana , Flores Felipe , Stevens Laura E. , Beca Francisco , Trinh Anne , Chilamakuri Chandra Sekhar Reddy , Papachristou Evangelia K. , Murphy Katherine , Su Ying , Marusyk Andriy , D'Santos Clive S. , Rueda Oscar M. , Beck Andrew H. , Caldas Carlos , Carroll Jason S. , Polyak Kornelia
Published: April 2023

List of genes differentially expressed in MCF7 cells expressing EN1-V5.
Supplementary Data from HDAC10 Regulates Cancer Stem-Like Cell Properties in KRAS-Driven Lung Adenocarcinoma
Authors: Li Yixuan , Zhang Xiangyang , Zhu Shaoqi , Dejene Eden A. , Peng Weiqun , Sepulveda Antonia , Seto Edward
Published: April 2023

Supplemental Materials and Methods, Tables and Figures.
Supplementary Figure S3 from 4E-BP1 Is a Tumor Suppressor Protein Reactivated by mTOR Inhibition in Head and Neck Cancer
Authors: Wang Zhiyong , Feng Xiaodong , Molinolo Alfredo A. , Martin Daniel , Vitale-Cross Lynn , Nohata Nijiro , Ando Mizuo , Wahba Amy , Amornphimoltham Panomwat , Wu Xingyu , Gilardi Mara , Allevato Michael , Wu Victoria , Steffen Dana J. , Tofilon Philip , Sonenberg Nahum , Califano Joseph , Chen Qianming , Lippman Scott M. , Gutkind J. Silvio
Published: April 2023

Supplementary Figure S3 shows Scheme of the m7GTP pull down (A) and eIF4G co-IP assays (B) depicting the regulation of ribosomal translation-initiating complex formation by mTOR and 4EBP; and C, densitometry analysis of figure 2C.
Table S2 from Tumor-Derived Prostaglandin E2 Promotes p50 NF-κB-Dependent Differentiation of Monocytic MDSCs
Authors: Porta Chiara , Consonni Francesca Maria , Morlacchi Sara , Sangaletti Sabina , Bleve Augusto , Totaro Maria Grazia , Larghi Paola , Rimoldi Monica , Tripodo Claudio , Strauss Laura , Banfi Stefania , Storto Mariangela , Pressiani Tiziana , Rimassa Lorenza , Tartari Silvia , Ippolito Alessandro , Doni Andrea , Soldà Giulia , Duga Stefano , Piccolo Viviana , Ostuni Renato , Natoli Gioacchino , Bronte Vincenzo , Balzac Fiorella , Turco Emilia , Hirsch Emilio , Colombo Mario P. , Sica Antonio
Published: April 2023

selective gene expression alterations in p50-/- PEC stimulated with IFNγ for 4 hours as compared to WT PEC
Supplementary Figures 1-3 from Sleeping Beauty Insertional Mutagenesis Reveals Important Genetic Drivers of Central Nervous System Embryonal Tumors
Authors: Beckmann Pauline J. , Larson Jon D. , Larsson Alex T. , Ostergaard Jason P. , Wagner Sandra , Rahrmann Eric P. , Shamsan Ghaidan A. , Otto George M. , Williams Rory L. , Wang Jun , Lee Catherine , Tschida Barbara R. , Das Paramita , Dubuc Adrian M. , Moriarity Branden S. , Picard Daniel , Wu Xiaochong , Rodriguez Fausto J. , Rosemarie Quincy , Krebs Ryan D. , Molan Amy M. , Demer Addison M. , Frees Michelle M. , Rizzardi Anthony E. , Schmechel Stephen C. , Eberhart Charles G. , Jenkins Robert B. , Wechsler-Reya Robert J. , Odde David J. , Huang Annie , Taylor Michael D. , Sarver Aaron L. , Largaespada David A.
Published: April 2023

Characterization of SB-induced medulloblastomas and CNS-PNETs.
Figure S3A-C from A Protease-Activated Fluorescent Probe Allows Rapid Visualization of Keratinocyte Carcinoma during Excision
Authors: Walker Ethan , Liu Yiqiao , Kim InYoung , Biro Mark , Iyer Sukanya Raj , Ezaldein Harib , Scott Jeffrey , Merati Miesha , Mistur Rachel , Zhou Bo , Straight Brian , Yim Joshua J. , Bogyo Matthew , Mann Margaret , Wilson David L. , Basilion James P. , Popkin Daniel L.
Published: April 2023

Figure S3A-C shows histology of false positive (FP) foreign body granuloma, benign inclusion cyst, and seborrheic keratosis skin samples.
Table S1 from Cancer Exacerbates Chemotherapy-Induced Sensory Neuropathy
Authors: Housley Stephen N. , Nardelli Paul , Carrasco Dario I. , Rotterman Travis M. , Pfahl Emily , Matyunina Lilya V. , McDonald John F. , Cope Timothy C.
Published: April 2023

List of gene clusters
Table S1 from Selective EGLN Inhibition Enables Ablative Radiotherapy and Improves Survival in Unresectable Pancreatic Cancer
Authors: Fujimoto Tara N. , Colbert Lauren E. , Huang Yanqing , Molkentine Jessica M. , Deorukhkar Amit , Baseler Laura , de la Cruz Bonilla Marimar , Yu Meifang , Lin Daniel , Gupta Sonal , Cabeceiras Peter K. , Kingsley Charles V. , Tailor Ramesh C. , Sawakuchi Gabriel O. , Koay Eugene J. , Piwnica-Worms Helen , Maitra Anirban , Taniguchi Cullen M.
Published: April 2023

Table S1. Distribution of Tumor and Treatment Characteristics for All Enrolled Animals by Treatment Group
Figure S4 from Selective EGLN Inhibition Enables Ablative Radiotherapy and Improves Survival in Unresectable Pancreatic Cancer
Authors: Fujimoto Tara N. , Colbert Lauren E. , Huang Yanqing , Molkentine Jessica M. , Deorukhkar Amit , Baseler Laura , de la Cruz Bonilla Marimar , Yu Meifang , Lin Daniel , Gupta Sonal , Cabeceiras Peter K. , Kingsley Charles V. , Tailor Ramesh C. , Sawakuchi Gabriel O. , Koay Eugene J. , Piwnica-Worms Helen , Maitra Anirban , Taniguchi Cullen M.
Published: April 2023

Figure S4. Metabolic cage analysis of mice treated with a clinically relevant course of dose-escalated RT to a limited upper abdominal field. (A) Water consumed during fractionated radiation treatments with area under the curve quantification in (B) (C) Food consumed during fractionated radiation treatments with area under the curve quantification in (D)
Supplementary Table 4 from Functional Analysis and Fine Mapping of the 9p22.2 Ovarian Cancer Susceptibility Locus
Authors: Buckley Melissa A. , Woods Nicholas T. , Tyrer Jonathan P. , Mendoza-Fandiño Gustavo , Lawrenson Kate , Hazelett Dennis J. , Najafabadi Hamed S. , Gjyshi Anxhela , Carvalho Renato S. , Lyra Paulo C. , Coetzee Simon G. , Shen Howard C. , Yang Ally W. , Earp Madalene A. , Yoder Sean J. , Risch Harvey , Chenevix-Trench Georgia , Ramus Susan J. , Phelan Catherine M. , Coetzee Gerhard A. , Noushmehr Houtan , Hughes Timothy R. , Sellers Thomas A. , Goode Ellen L. , Pharoah Paul D. , Gayther Simon A. , Monteiro Alvaro N.A.
Published: April 2023

Fine mapping association results. Contains univariate and conditional (conditioning on rs3814113) analysis.
Supplementary Data from Nutrient Stress–Dysregulated Antisense lncRNA GLS-AS Impairs GLS-Mediated Metabolism and Represses Pancreatic Cancer Progression
Authors: Deng Shi-Jiang , Chen Heng-Yu , Zeng Zhu , Deng Shichang , Zhu Shuai , Ye Zeng , He Chi , Liu Ming-Liang , Huang Kang , Zhong Jian-Xin , Xu Feng-Yu , Li Qiang , Liu Yang , Wang Chunyou , Zhao Gang
Published: April 2023

Supplementary Methods
Supplementary Data from Spatiotemporal Regulation of ΔNp63 by TGFβ-Regulated miRNAs Is Essential for Cancer Metastasis
Authors: Bui Ngoc H.B. , Napoli Marco , Davis Andrew John , Abbas Hussein A. , Rajapakshe Kimal , Coarfa Cristian , Flores Elsa R.
Published: April 2023

Supplementary information includes Supplementary figure legends, Materials and Methods, and Reference
Figure S6 from Spatiotemporal Regulation of ΔNp63 by TGFβ-Regulated miRNAs Is Essential for Cancer Metastasis
Authors: Bui Ngoc H.B. , Napoli Marco , Davis Andrew John , Abbas Hussein A. , Rajapakshe Kimal , Coarfa Cristian , Flores Elsa R.
Published: April 2023

Figure S6. Correlation between ÃŽâ€�Np63 and microRNAs expression in cancer cell lines.
Figure S5 from Spatiotemporal Regulation of ΔNp63 by TGFβ-Regulated miRNAs Is Essential for Cancer Metastasis
Authors: Bui Ngoc H.B. , Napoli Marco , Davis Andrew John , Abbas Hussein A. , Rajapakshe Kimal , Coarfa Cristian , Flores Elsa R.
Published: April 2023

Figure S5. TGFÃŽÂ² regulates ÃŽÂ€�Np63 expression via miR-22-3p, miR-30a-5p, miR-203a-3p and miR-222-3p.
Figure S3 from Nicotinamide Phosphoribosyltransferase Acts as a Metabolic Gate for Mobilization of Myeloid-Derived Suppressor Cells
Authors: Travelli Cristina , Consonni Francesca Maria , Sangaletti Sabina , Storto Mariangela , Morlacchi Sara , Grolla Ambra A. , Galli Ubaldina , Tron Gian Cesare , Portararo Paola , Rimassa Lorenza , Pressiani Tiziana , Mazzone Massimiliano , Trovato Rosalinda , Ugel Stefano , Bronte Vincenzo , Tripodo Claudio , Colombo Mario P. , Genazzani Armando A. , Sica Antonio
Published: April 2023

Modulation of NAMPT expression by polarizing signals
Supplementary Data from Retrodifferentiation of Human Tumor Hepatocytes to Stem Cells Leads to Metabolic Reprogramming and Chemoresistance
Authors: Fekir Karim , Dubois-Pot-Schneider Hélène , Désert Romain , Daniel Yoann , Glaise Denise , Rauch Claudine , Morel Fabrice , Fromenty Bernard , Musso Orlando , Cabillic Florian , Corlu Anne
Published: April 2023

Supplemental Table 5 provides the lists of genes significantly deregulated between HepaRG-Spheres and HepaRG-D10 cells and between HepaRG-SP and HepaRG-D10 cells.
Supplementary Figure S2 from Suppression of LIM Kinase 1 and LIM Kinase 2 Limits Glioblastoma Invasion
Authors: Chen Joseph , Ananthanarayanan Badriprasad , Springer Kelsey S. , Wolf Kayla J. , Sheyman Sharon M. , Tran Vivien D. , Kumar Sanjay
Published: April 2023

2D Motility of LIMK1/2 KD U373s show no significant difference in cell speed or persistence.
Movie S3 from Targeting Novel Sodium Iodide Symporter Interactors ADP-Ribosylation Factor 4 and Valosin-Containing Protein Enhances Radioiodine Uptake
Authors: Fletcher Alice , Read Martin L. , Thornton Caitlin E.M. , Larner Dean P. , Poole Vikki L. , Brookes Katie , Nieto Hannah R. , Alshahrani Mohammed , Thompson Rebecca J. , Lavery Gareth G. , Landa Iñigo , Fagin James A. , Campbell Moray J. , Boelaert Kristien , Turnell Andrew S. , Smith Vicki E. , McCabe Christopher J.
Published: April 2023

The sodium iodide symporter NIS is endosomally trafficked in association with clathrin
Table S3 from The Frequency of Ras Mutations in Cancer
Authors: Prior Ian A. , Hood Fiona E. , Hartley James L.
Published: April 2023

Ras mutation-specific patterns in cancer. Data are all collated from COSMIC v85 and where indicated converted in patient numbers using ACS 2018 cancer incidence statistics.
Supplementary Table 2 from The Risk of Ovarian Cancer Increases with an Increase in the Lifetime Number of Ovulatory Cycles: An Analysis from the Ovarian Cancer Cohort Consortium (OC3)
Authors: Trabert Britton , Tworoger Shelley S. , O'Brien Katie M. , Townsend Mary K. , Fortner Renée T. , Iversen Edwin S. , Hartge Patricia , White Emily , Amiano Pilar , Arslan Alan A. , Bernstein Leslie , Brinton Louise A. , Buring Julie E. , Dossus Laure , Fraser Gary E. , Gaudet Mia M. , Giles Graham G. , Gram Inger T. , Harris Holly R. , Bolton Judith Hoffman , Idahl Annika , Jones Michael E. , Kaaks Rudolf , Kirsh Victoria A. , Knutsen Synnove F. , Kvaskoff Marina , Lacey James V. , Lee I-Min , Milne Roger L. , Onland-Moret N. Charlotte , Overvad Kim , Patel Alpa V. , Peters Ulrike , Poynter Jenny N. , Riboli Elio , Robien Kim , Rohan Thomas E. , Sandler Dale P. , Schairer Catherine , Schouten Leo J. , Setiawan Veronica W. , Swerdlow Anthony J. , Travis Ruth C. , Trichopoulou Antonia , van den Brandt Piet A. , Visvanathan Kala , Wilkens Lynne R. , Wolk Alicja , Zeleniuch-Jacquotte Anne , Wentzensen Nicolas
Published: April 2023

Associations between continuous total lifetime number of ovulatory cycles and ovarian cancer by tumor aggressiveness considering mutual adjustment for LOC component factors: duration of oral contraceptive use and pregnancies, Ovarian Cancer Cohort Consortium (OC3).
Table 1 from Noncanonical IL6 Signaling-Mediated Activation of YAP Regulates Cell Migration and Invasion in Ovarian Clear Cell Cancer
Authors: Azar Walid J. , Christie Elizabeth L. , Mitchell Chris , Liu David S. , Au-Yeung George , Bowtell David D.L.
Published: April 2023

IL-6 RTPCR primers
Supplementary Tables from A Prospective Analysis of Circulating Plasma Metabolites Associated with Ovarian Cancer Risk
Authors: Zeleznik Oana A. , Eliassen A. Heather , Kraft Peter , Poole Elizabeth M. , Rosner Bernard A. , Jeanfavre Sarah , Deik Amy A. , Bullock Kevin , Hitchcock Daniel S. , Avila-Pacheco Julian , Clish Clary B. , Tworoger Shelley S.
Published: April 2023

Supplementary Tables 1-6
Supplementary Figures from A Prospective Analysis of Circulating Plasma Metabolites Associated with Ovarian Cancer Risk
Authors: Zeleznik Oana A. , Eliassen A. Heather , Kraft Peter , Poole Elizabeth M. , Rosner Bernard A. , Jeanfavre Sarah , Deik Amy A. , Bullock Kevin , Hitchcock Daniel S. , Avila-Pacheco Julian , Clish Clary B. , Tworoger Shelley S.
Published: April 2023

Supplementary Figures 1-8
Supplementary Table 3 from Targeting the E3 Ubiquitin Ligase PJA1 Enhances Tumor-Suppressing TGFβ Signaling
Authors: Chen Jian , Mitra Abhisek , Li Shulin , Song Shumei , Nguyen Bao-Ngoc , Chen Jiun-Sheng , Shin Ji-Hyun , Gough Nancy R. , Lin Paul , Obias Vincent , He Aiwu Ruth , Yao Zhixing , Malta Tathiane M. , Noushmehr Houtan , Latham Patricia S. , Su Xiaoping , Rashid Asif , Mishra Bibhuti , Wu Ray-Chang , Mishra Lopa
Published: April 2023

Gene numbers regulated by PJA1 knockdown and TGF-β1 treatment
Supplementary Tables from Transcription Factors Involved in Tumorigenesis Are Over-Represented in Mutated Active DNA-Binding Sites in Neuroblastoma
Authors: Capasso Mario , Lasorsa Vito Alessandro , Cimmino Flora , Avitabile Marianna , Cantalupo Sueva , Montella Annalaura , De Angelis Biagio , Morini Martina , de Torres Carmen , Castellano Aurora , Locatelli Franco , Iolascon Achille
Published: April 2023

Supplementary Tables. Table S1. Clinical features of In-house collected NB samples; Table S2. Results of mutational enrichment analysis; Table S3. Results of Cox regression analysis; Table S4. Variant clusterization and expression levels of candidate target genes.
Fig Supp 5 from HDAC6 Plays a Noncanonical Role in the Regulation of Antitumor Immune Responses, Dissemination, and Invasiveness of Breast Cancer
Authors: Banik Debarati , Noonepalle Satish , Hadley Melissa , Palmer Erica , Gracia-Hernandez Maria , Zevallos-Delgado Christian , Manhas Namratta , Simonyan Hayk , Young Colin N. , Popratiloff Anastas , Chiappinelli Katherine B. , Fernandes Rohan , Sotomayor Eduardo M. , Villagra Alejandro
Published: April 2023

Fig Supp 5
Figure S5 from Dual Oxidase-Induced Sustained Generation of Hydrogen Peroxide Contributes to Pharmacologic Ascorbate-Induced Cytotoxicity
Authors: Gibson Adrienne R. , O'Leary Brianne R. , Du Juan , Sarsour Ehab H. , Kalen Amanda L. , Wagner Brett A. , Stolwijk Jeffrey M. , Falls-Hubert Kelly C. , Alexander Matthew S. , Carroll Rory S. , Spitz Douglas R. , Buettner Garry R. , Goswami Prabhat C. , Cullen Joseph J.
Published: April 2023

H1299T-CAT cells overexpress catalase in vivo.
Figure S6 from Loss of a Negative Feedback Loop between IRF8 and AR Promotes Prostate Cancer Growth and Enzalutamide Resistance
Authors: Wu Hongxi , You Linjun , Li Yan , Zhao Zhili , Shi Guangjiang , Chen Zhen , Wang Zhuo , Li Xianjing , Du Shijia , Ye Wanli , Gao Xiaofang , Duan Jingjing , Cheng Yan , Tao Weiyan , Bian Jinsong , Zhou Jin-Rong , Zhu Qingyi , Yang Yong
Published: April 2023

LNCaP-shIRF8 cells are less sensitive to ENZ treatment.
Supplementary Methods from Genetic Variants Implicate Dual Oxidase-2 in Familial and Sporadic Nonmedullary Thyroid Cancer
Authors: Bann Darrin V. , Jin Qunyan , Sheldon Kathryn E. , Houser Kenneth R. , Nguyen Lan , Warrick Joshua I. , Baker Maria J. , Broach James R. , Gerhard Glenn S. , Goldenberg David
Published: April 2023

Supplemental Methods
Supplementary Figure S6 from Blocking Angiopoietin-2 Promotes Vascular Damage and Growth Inhibition in Mouse Tumors Treated with Small Doses of Radiation
Authors: Kallio Pauliina , Jokinen Elina , Högström Jenny , Das Suvendu , Heino Sarika , Lähde Marianne , Brodkin Jefim , Korhonen Emilia A. , Alitalo Kari
Published: April 2023

Supplementary Figure S6
Supplementary Figures and Tables from High PD-1/PD-L1 Checkpoint Interaction Infers Tumor Selection and Therapeutic Sensitivity to Anti-PD-1/PD-L1 Treatment
Authors: Sánchez-Magraner Lissete , Miles James , Baker Claire L. , Applebee Christopher J. , Lee Dae-Jin , Elsheikh Somaia , Lashin Shaimaa , Withers Katriona , Watts Andrew G. , Parry Richard , Edmead Christine , Lopez Jose Ignacio , Mehta Raj , Italiano Antoine , Ward Stephen G. , Parker Peter J. , Larijani Banafshé
Published: April 2023

Supplementary Figures and Tables
Supplementary Data from In Silico Models Accurately Predict In Vivo Response for IL6 Blockade in Head and Neck Cancer
Authors: Nazari Fereshteh , Oklejas Alexandra E. , Nör Jacques E. , Pearson Alexander T. , Jackson Trachette L.
Published: April 2023

All the model underlying assumptions, equations of the model and the parameter estimation are described in Supplementary Material
Figure S5 from Normal Breast-Derived Epithelial Cells with Luminal and Intrinsic Subtype-Enriched Gene Expression Document Interindividual Differences in Their Differentiation Cascade
Authors: Kumar Brijesh , Prasad Mayuri , Bhat-Nakshatri Poornima , Anjanappa Manjushree , Kalra Maitri , Marino Natascia , Storniolo Anna Maria , Rao Xi , Liu Sheng , Wan Jun , Liu Yunlong , Nakshatri Harikrishna
Published: April 2023

Characterization of KTB cell lines using additional markers
Figure S2 from Chemotherapy-Induced Upregulation of Small Extracellular Vesicle-Associated PTX3 Accelerates Breast Cancer Metastasis
Authors: Wills Carson A. , Liu Xiaoming , Chen Longgui , Zhao Yuanjun , Dower Christopher M. , Sundstrom Jeffrey , Wang Hong-Gang
Published: April 2023

Small extracellular vesicles derived from DXR-treated cells accelerate MDA-MB-468 breast cancer metastasis.
Table S3 from 3D Functional Genomics Screens Identify CREBBP as a Targetable Driver in Aggressive Triple-Negative Breast Cancer
Authors: Peck Barrie , Bland Philip , Mavrommati Ioanna , Muirhead Gareth , Cottom Hannah , Wai Patty T. , Maguire Sarah L. , Barker Holly E. , Morrison Eamonn , Kriplani Divya , Yu Lu , Gibson Amy , Falgari Giulia , Brennan Keith , Farnie Gillian , Buus Richard , Marlow Rebecca , Novo Daniela , Knight Eleanor , Guppy Naomi , Kolarevic Daniela , Susnjar Snezana , Milijic Natasa Medic , Naidoo Kalnisha , Gazinska Patrycja , Roxanis Ioannis , Pancholi Sunil , Martin Lesley-Ann , Holgersen Erle M. , Cheang Maggie C.U. , Noor Farzana , Postel-Vinay Sophie , Quinn Gerard , McDade Simon , Krasny Lukas , Huang Paul , Daley Frances , Wallberg Fredrik , Choudhary Jyoti S. , Haider Syed , Tutt Andrew N. , Natrajan Rachael
Published: April 2023

Validation screen of the top 50 ranked genes in 2D and 3D.
Supplementary Figure S8 from YAP Orchestrates Heterotypic Endothelial Cell Communication via HGF/c-MET Signaling in Liver Tumorigenesis
Authors: Thomann Stefan , Weiler Sofia M.E. , Marquard Simone , Rose Fabian , Ball Claudia R. , Tóth Marcell , Wei Teng , Sticht Carsten , Fritzsche Sarah , Roessler Stephanie , De La Torre Carolina , Ryschich Eduard , Ermakova Olga , Mogler Carolin , Kazdal Daniel , Gretz Norbert , Glimm Hanno , Rempel Eugen , Schirmacher Peter , Breuhahn Kai
Published: April 2023

HGF/c-MET expression and signaling in a CEC model system
Supplementary Materials from Targeting PAK4 Inhibits Ras-Mediated Signaling and Multiple Oncogenic Pathways in High-Risk Rhabdomyosarcoma
Authors: Dasgupta Atreyi , Sierra Laura , Tsang Susan V. , Kurenbekova Lyazat , Patel Tajhal , Rajapakse Kimal , Shuck Ryan L. , Rainusso Nino , Landesman Yosef , Unger Thaddeus , Coarfa Cristian , Yustein Jason T.
Published: April 2023

Detail description of some of the methods mentioned in main text.
Table S5 from Chromatin Looping Shapes KLF5-Dependent Transcriptional Programs in Human Epithelial Cancers
Authors: Liu Yanli , Guo Bingqian , Aguilera-Jimenez Estrella , Chu Vivian S. , Zhou Jin , Wu Zhong , Francis Joshua M. , Yang Xiaojun , Choi Peter S. , Bailey Swneke D. , Zhang Xiaoyang
Published: April 2023

KLF5 expression and dependency
Supplementary Data from Pleiotropic Mechanisms Drive Endocrine Resistance in the Three-Dimensional Bone Microenvironment
Authors: Dhimolea Eugen , de Matos Simoes Ricardo , Kansara Dhvanir , Weng Xiang , Sharma Shruti , Awate Pallavi , Liu Zhiyi , Gao Dong , Mitsiades Nicholas , Schwab Joseph H. , Chen Yu , Jeselsohn Rinath , Culhane Aedín C. , Brown Myles , Georgakoudi Irene , Mitsiades Constantine S.
Published: April 2023

Supplemental Materials & Methods and Figures 1-6. Sup. Figure 1. The effect of antiestrogens against ER+ BrCa spheroid cultures is attenuated by BMSCs. Sup. Figure 2. BMSCs attenuate the antiestrogen response of BrCa xenografts in vivo. Sup. Figure 3. BMSCs attenuate hormone-induced gene expression in cancer spheroids with varying effect on HR expression. Sup. Figure 4. BMSCs paracrine effect induces HT resistance in PrCa/BrCa 3D spheroids via IL-6 secretion or in IL-6-independent manner. Sup. Figure 5. Transcriptional signatures of genes downregulated (log2FC< -1) or upregulated (log2FC > 1) in MCF7 spheroids cocultured (8 days) with HS5 (vs. monoculture) do not correlate with relapse-free survival of 342 ER-negative BrCa patients (stratified using the upper tertile of the respective signature as cutoff). Sup. Figure 6. BrCa spheroids in coculture with BMSC acquire increased dependence on growth factor receptor and downstream signaling.
TableS1 from Single-Cell Transcriptomic Heterogeneity in Invasive Ductal and Lobular Breast Cancer Cells
Authors: Chen Fangyuan , Ding Kai , Priedigkeit Nolan , Elangovan Ashuvinee , Levine Kevin M. , Carleton Neil , Savariau Laura , Atkinson Jennifer M. , Oesterreich Steffi , Lee Adrian V.
Published: April 2023

TableS1
FigS3 from Single-Cell Transcriptomic Heterogeneity in Invasive Ductal and Lobular Breast Cancer Cells
Authors: Chen Fangyuan , Ding Kai , Priedigkeit Nolan , Elangovan Ashuvinee , Levine Kevin M. , Carleton Neil , Savariau Laura , Atkinson Jennifer M. , Oesterreich Steffi , Lee Adrian V.
Published: April 2023

FigS3
Supplementary Table S5 from Targeting p300/CBP Attenuates Hepatocellular Carcinoma Progression through Epigenetic Regulation of Metabolism
Authors: Cai Ling-Yan , Chen Shi-Jie , Xiao Sen-Hao , Sun Qin-Juan , Ding Chen-Hong , Zheng Bai-Nan , Zhu Xin-Yan , Liu Shu-Qing , Yang Feng , Yang Ya-Xi , Zhou Bing , Luo Cheng , Zhang Xin , Xie Wei-Fen
Published: April 2023

Supplementary Table S5. Overlaped genes of ATAC-seq and RNA-seq
Supplementary Figures and Figure Legends from Targeting p300/CBP Attenuates Hepatocellular Carcinoma Progression through Epigenetic Regulation of Metabolism
Authors: Cai Ling-Yan , Chen Shi-Jie , Xiao Sen-Hao , Sun Qin-Juan , Ding Chen-Hong , Zheng Bai-Nan , Zhu Xin-Yan , Liu Shu-Qing , Yang Feng , Yang Ya-Xi , Zhou Bing , Luo Cheng , Zhang Xin , Xie Wei-Fen
Published: April 2023

Supplementary Figure S1. p300 is a potential target in HCC. Supplementary Figure S2. B029-2 is a potential and selective catalytic p300/CBP inhibitor that targets HCC.Supplementary Figure S3. Targeting p300 suppresses the cell-proliferation of HCC cells.Supplementary Figure S4. B029-2 regulates the expression of ribosome protein genes.Supplementary Figure S5. The expression status of metabolic enzymes in liver hepatocellular carcinoma (LIHC) patients.Supplementary Figure S6. Epigenetic regulation of metabolic enzymes in HCC via the histone acetyltransferase activity of p300/CBP.Supplementary Figure S7. B029-2 treatment reduced the occupation of p300 and BRD4 on the promoters of the six metabolic genes.Supplementary Figure S8. Suppressing the expression of PSPH and DTYMK inhibits HCC progression.Supplementary Figure S9. Overexpression of PSPH and DTYMK partially reversed the inhibitory effects of B029-2 on HCC cells.Supplementary Figure S10. Overexpression of PSPH and DTYMK partially reversed the inhibitory effects of B029-2 on HCC xenografts.
Supplementary Data from KIF15-Mediated Stabilization of AR and AR-V7 Contributes to Enzalutamide Resistance in Prostate Cancer
Authors: Gao Lin , Zhang Wenbo , Zhang Jing , Liu Junmei , Sun Feifei , Liu Hui , Hu Jing , Wang Xin , Wang Xueli , Su Peng , Chen Shouzhen , Qu Sifeng , Shi Benkang , Xiong Xueting , Chen Weiwen , Dong Xuesen , Han Bo
Published: April 2023

Supplemental Materials and Methods
Supplementary Figures from Transcriptional Repression of SIRT3 Potentiates Mitochondrial Aconitase Activation to Drive Aggressive Prostate Cancer to the Bone
Authors: Sawant Dessai Abhisha , Dominguez Mayrel Palestino , Chen Uan-I , Hasper John , Prechtl Christian , Yu Cuijuan , Katsuta Eriko , Dai Tao , Zhu Bokai , Jung Sung Yun , Putluri Nagireddy , Takabe Kazuaki , Zhang Xiang H.-F. , O'Malley Bert W. , Dasgupta Subhamoy
Published: April 2023

Supplementary Figures
Supplementary Data from Activated ALK Cooperates with N-Myc via Wnt/β-Catenin Signaling to Induce Neuroendocrine Prostate Cancer
Authors: Unno Kenji , Chalmers Zachary R. , Pamarthy Sahithi , Vatapalli Rajita , Rodriguez Yara , Lysy Barbara , Mok Hanlin , Sagar Vinay , Han Huiying , Yoo Young A. , Ku Sheng-Yu , Beltran Himisha , Zhao Yue , Abdulkadir Sarki A.
Published: April 2023

Supplementary Data
Supplementary Tables from LncRNA HIF1A-AS1 Promotes Gemcitabine Resistance of Pancreatic Cancer by Enhancing Glycolysis through Modulating the AKT/YB1/HIF1α Pathway
Authors: Xu Fengyu , Huang Mengqi , Chen Qingyong , Niu Yi , Hu Yuhang , Hu Ping , Chen Ding , He Chi , Huang Kang , Zeng Zhu , Tang Jiang , Wang Fan , Zhao Yong , Wang Chunyou , Zhao Gang
Published: April 2023

Supplementary Tables
Supplementary Figure S2 from Nedd9 Restrains Autophagy to Limit Growth of Early Stage Non–Small Cell Lung Cancer
Authors: Deneka Alexander Y. , Kopp Meghan C. , Nikonova Anna S. , Gaponova Anna V. , Kiseleva Anna A. , Hensley Harvey H. , Flieder Douglas B. , Serebriiskii Ilya G. , Golemis Erica A.
Published: April 2023

Histopathological assessment of KP and KPN lungs
Table S3 from A Transcriptionally Distinct Subpopulation of Healthy Acinar Cells Exhibit Features of Pancreatic Progenitors and PDAC
Authors: Gopalan Vishaka , Singh Arashdeep , Rashidi Mehrabadi Farid , Wang Li , Ruppin Eytan , Arda H. Efsun , Hannenhalli Sridhar
Published: April 2023

Differentially expressed genes in the edge acinar state compared to the non-edge acinar state.
Table S2 from A Transcriptionally Distinct Subpopulation of Healthy Acinar Cells Exhibit Features of Pancreatic Progenitors and PDAC
Authors: Gopalan Vishaka , Singh Arashdeep , Rashidi Mehrabadi Farid , Wang Li , Ruppin Eytan , Arda H. Efsun , Hannenhalli Sridhar
Published: April 2023

Transcription factor regulon activities in the non-edge acinar to edge acinar transition.
Supplementary Figure S5 from E2A Modulates Stemness, Metastasis, and Therapeutic Resistance of Breast Cancer
Authors: López-Menéndez Celia , Vázquez-Naharro Alberto , Santos Vanesa , Dubus Pierre , Santamaría Patricia G. , Martínez-Ramírez Ángel , Portillo Francisco , Moreno-Bueno Gema , Faraldo Marisa M. , Cano Amparo
Published: April 2023

Figure S5 and legend
Supplementary data tables from STK11/LKB1 Loss of Function Is Associated with Global DNA Hypomethylation and S-Adenosyl-Methionine Depletion in Human Lung Adenocarcinoma
Authors: Koenig Michael J. , Agana Bernice A. , Kaufman Jacob M. , Sharpnack Michael F. , Wang Walter Z. , Weigel Christoph , Navarro Fabio C.P. , Amann Joseph M. , Cacciato Nicole , Arasada Rajeswara Rao , Gerstein Mark B. , Wysocki Vicki H. , Oakes Christopher , Carbone David P.
Published: April 2023

Supplementary Data Tables
Supplementary Data from mTORC1 Promotes ARID1A Degradation and Oncogenic Chromatin Remodeling in Hepatocellular Carcinoma
Authors: Zhang Shanshan , Zhou Yu-Feng , Cao Jian , Burley Stephen K. , Wang Hui-Yun , Zheng X.F. Steven
Published: April 2023

Fig S1-S6 and Table S1
Supplemental Video 3 from Phenotypic Heterogeneity and Metastasis of Breast Cancer Cells
Authors: Hapach Lauren A. , Carey Shawn P. , Schwager Samantha C. , Taufalele Paul V. , Wang Wenjun , Mosier Jenna A. , Ortiz-Otero Nerymar , McArdle Tanner J. , Goldblatt Zachary E. , Lampi Marsha C. , Bordeleau Francois , Marshall Jocelyn R. , Richardson Isaac M. , Li Jiahe , King Michael R. , Reinhart-King Cynthia A.
Published: April 2023

MDA+ cells migrating in collagen tracks
Supplementary Materials from Fusobacterium Nucleatum Promotes the Development of Colorectal Cancer by Activating a Cytochrome P450/Epoxyoctadecenoic Acid Axis via TLR4/Keap1/NRF2 Signaling
Authors: Kong Cheng , Yan Xuebing , Zhu Yefei , Zhu Huiyuan , Luo Ying , Liu Peipei , Ferrandon Sylvain , Kalady Matthew F. , Gao Renyuan , He Jide , Yin Fang , Qu Xiao , Zheng Jiayi , Gao Yaohui , Wei Qing , Ma Yanlei , Liu Jun-Yan , Qin Huanlong
Published: April 2023

Supplemental methods, Figure legends, and Figure S1-S5
Supplementary Data from MTAP Deficiency–Induced Metabolic Reprogramming Creates a Vulnerability to Cotargeting De Novo Purine Synthesis and Glycolysis in Pancreatic Cancer
Authors: Hu Qiangsheng , Qin Yi , Ji Shunrong , Shi Xiuhui , Dai Weixing , Fan Guixiong , Li Shuo , Xu Wenyan , Liu Wensheng , Liu Mengqi , Zhang Zheng , Ye Zeng , Zhou Zhijun , Yang Jingxuan , Zhuo Qifeng , Yu Xianjun , Li Min , Xu Xiaowu
Published: April 2023

Supplementary Figure legends(FigureS1-S7)
Supplementary Table 1 from Nicotinamide Mononucleotide Prevents Cisplatin-Induced Cognitive Impairments
Authors: Yoo Ki Hyun , Tang Jason J. , Rashid Mohammad Abdur , Cho Chang Hoon , Corujo-Ramirez Ana , Choi Jonghoon , Bae Mun Gyeong , Brogren Danielle , Hawse John R. , Hou Xiaonan , Weroha S. John , Oliveros Alfredo , Kirkeby Lindsey A. , Baur Joseph A. , Jang Mi-Hyeon
Published: April 2023

Antibodies used in this study
Supplementary Data from Treatment with HIV-Protease Inhibitor Nelfinavir Identifies Membrane Lipid Composition and Fluidity as a Therapeutic Target in Advanced Multiple Myeloma
Authors: Besse Lenka , Besse Andrej , Stolze Sara C. , Sobh Amin , Zaal Esther A. , van der Ham Alwin J. , Ruiz Mario , Phuyal Santosh , Büchler Lorina , Sathianathan Marc , Florea Bogdan I. , Borén Jan , Ståhlman Marcus , Huber Julia , Bolomsky Arnold , Ludwig Heinz , Hannich J. Thomas , Loguinov Alex , Everts Bart , Berkers Celia R. , Pilon Marc , Farhan Hesso , Vulpe Christopher D. , Overkleeft Herman S. , Driessen Christoph
Published: April 2023

Supplementary Methods, figures and tables
Supplementary Table S1 from AMBRA1 Promotes TGFβ Signaling via Nonproteolytic Polyubiquitylation of Smad4
Authors: Liu Jinquan , Yuan Bo , Cao Jin , Luo Hongjie , Gu Shuchen , Zhang Mengdi , Ding Ran , Zhang Long , Zhou Fangfang , Hung Mien-Chie , Xu Pinglong , Lin Xia , Jin Jianping , Feng Xin-Hua
Published: April 2023

Table S1-siRNA sequences used in this study
Supplementary Figure S5 from AMBRA1 Promotes TGFβ Signaling via Nonproteolytic Polyubiquitylation of Smad4
Authors: Liu Jinquan , Yuan Bo , Cao Jin , Luo Hongjie , Gu Shuchen , Zhang Mengdi , Ding Ran , Zhang Long , Zhou Fangfang , Hung Mien-Chie , Xu Pinglong , Lin Xia , Jin Jianping , Feng Xin-Hua
Published: April 2023

AMBRA1 is critical for TGF-β-induced EMT, migration, and invasion.
Supplementary Data from Serine-Threonine Kinase TAO3-Mediated Trafficking of Endosomes Containing the Invadopodia Scaffold TKS5α Promotes Cancer Invasion and Tumor Growth
Authors: Iizuka Shinji , Quintavalle Manuela , Navarro Jose C. , Gribbin Kyle P. , Ardecky Robert J. , Abelman Matthew M. , Ma Chen-Ting , Sergienko Eduard , Zeng Fu-Yue , Pass Ian , Thomas George V. , McWeeney Shannon K. , Hassig Christian A. , Pinkerton Anthony B. , Courtneidge Sara A.
Published: April 2023

Includes Sup. Figures 1-7, Tables 1-6 and Methods.
Supplementary Data from Targeting the HuR Oncogenic Role with a New Class of Cytoplasmic Dimerization Inhibitors
Authors: Filippova Natalia , Yang Xiuhua , Ananthan Subramaniam , Calano Jennifer , Pathak Vibha , Bratton Larry , Vekariya Rakesh H. , Zhang Sixue , Ofori Edward , Hayward Emily N. , Namkoong David , Crossman David K. , Crowley Michael R. , King Peter H. , Mobley James , Nabors Louis B.
Published: April 2023

Supplementary materials including tables, figures, and detailed methods.
Supplementary Data File S5 from Targeting the HuR Oncogenic Role with a New Class of Cytoplasmic Dimerization Inhibitors
Authors: Filippova Natalia , Yang Xiuhua , Ananthan Subramaniam , Calano Jennifer , Pathak Vibha , Bratton Larry , Vekariya Rakesh H. , Zhang Sixue , Ofori Edward , Hayward Emily N. , Namkoong David , Crossman David K. , Crowley Michael R. , King Peter H. , Mobley James , Nabors Louis B.
Published: April 2023

File (tmp-LBN-Data-Kinase_Inhibition-050719) provides the kinase profiling data (10-point titration results, Scientific's SelectScreen{trade mark, serif} Kinase Profiling, Thermo Fisher) for SRI-41666 and SRI-42127 compounds for Fig. S4.
Supplementary Data File S1 from Targeting the HuR Oncogenic Role with a New Class of Cytoplasmic Dimerization Inhibitors
Authors: Filippova Natalia , Yang Xiuhua , Ananthan Subramaniam , Calano Jennifer , Pathak Vibha , Bratton Larry , Vekariya Rakesh H. , Zhang Sixue , Ofori Edward , Hayward Emily N. , Namkoong David , Crossman David K. , Crowley Michael R. , King Peter H. , Mobley James , Nabors Louis B.
Published: April 2023

File (DATA FILE S1 Lead optimization-SAR-Chemical compound synthesis-11-03-2020-SZ v4, pdf format 297 pages) provides a detailed and sequential description of the chemical synthesis of compounds evaluated in this study and a docking study for SRI-42127 compound with SRI-42127-binding sites at HuR.
Supplementary Data from Peripheral Nerve Resident Macrophages and Schwann Cells Mediate Cancer-Induced Pain
Authors: De Logu Francesco , Marini Matilde , Landini Lorenzo , Souza Monteiro de Araujo Daniel , Bartalucci Niccolò , Trevisan Gabriela , Bruno Gennaro , Marangoni Martina , Schmidt Brian L. , Bunnett Nigel W. , Geppetti Pierangelo , Nassini Romina
Published: April 2023

Supplementary Materials and Methods and Supplementary Figures
Supplementary Table S2 from Genetic Variation and Recurrent Haplotypes on Chromosome 6q23-25 Risk Locus in Familial Lung Cancer
Authors: Musolf Anthony M. , Simpson Claire L. , Moiz Bilal A. , Pikielny Claudio W. , Middlebrooks Candace D. , Mandal Diptasri , de Andrade Mariza , Cole Michael D. , Gaba Colette , Yang Ping , You Ming , Li Yafang , Kupert Elena Y. , Anderson Marshall W. , Schwartz Ann G. , Pinney Susan M. , Amos Christopher I. , Bailey-Wilson Joan E.
Published: April 2023

Unfiltered and filtered LOD scores for all nine families
Supplementary Data from NEIL3 Prevents Senescence in Hepatocellular Carcinoma by Repairing Oxidative Lesions at Telomeres during Mitosis
Authors: Zhao Zhenjun , Gad Helge , Benitez-Buelga Carlos , Sanjiv Kumar , Xiangwei Hua , Kang He , Feng Mingxuan , Zhao Zhicong , Berglund Ulrika Warpman , Xia Qiang , Helleday Thomas
Published: April 2023

Supplementary Data from NEIL3 Prevents Senescence in Hepatocellular Carcinoma by Repairing Oxidative Lesions at Telomeres during Mitosis
Supplementary Data from Cancer-Associated SF3B1 Mutations Confer a BRCA-Like Cellular Phenotype and Synthetic Lethality to PARP Inhibitors
Authors: Lappin Katrina M. , Barros Eliana M. , Jhujh Satpal S. , Irwin Gareth W. , McMillan Hayley , Liberante Fabio G. , Latimer Cheryl , La Bonte Melissa J. , Mills Ken I. , Harkin D. Paul , Stewart Grant S. , Savage Kienan I.
Published: April 2023

Supplementary Data from Cancer-Associated SF3B1 Mutations Confer a BRCA-Like Cellular Phenotype and Synthetic Lethality to PARP Inhibitors
Supplementary Figure 2 from Reorganization of the 3D Genome Pinpoints Noncoding Drivers of Primary Prostate Tumors
Authors: Hawley James R. , Zhou Stanley , Arlidge Christopher , Grillo Giacomo , Kron Ken J. , Hugh-White Rupert , van der Kwast Theodorus H. , Fraser Michael , Boutros Paul C. , Bristow Robert G. , Lupien Mathieu
Published: April 2023

Compartmentalization changes in tumours is not associated with widespread differential gene expression.
Supplementary Table 3 from Plasticity in the Absence of NOTCH Uncovers a RUNX2-Dependent Pathway in Small Cell Lung Cancer
Authors: Hong Deli , Knelson Erik H. , Li Yixiang , Durmaz Yavuz T. , Gao Wenhua , Walton Emily , Vajdi Amir , Thai Tran , Sticco-Ivins Maura , Sabet Amin H. , Jones Kristen L. , Schinzel Anna C. , Bronson Rod T. , Nguyen Quang-De , Tolstorukov Michael Y. , Vivero Marina , Signoretti Sabina , Barbie David A. , Oser Matthew G.
Published: April 2023

RNA-seq data of the SCLC adherent cells that are either Notch-WT or Notch-Mutant
Supplementary Table from Differential Patterns of Risk Factors for Early-Onset Breast Cancer by ER Status in African American Women
Authors: Bertrand Kimberly A. , Bethea Traci N. , Adams-Campbell Lucile L. , Rosenberg Lynn , Palmer Julie R.
Published: April 2023

Supplementary Table. Baseline characteristics of the study population, by age.
Supplementary Consort Diagram, Tables 1 - 2 from A Population-Based Evaluation of Cervical Screening in the United States: 2008–2011
Authors: Cuzick Jack , Myers Orrin , Hunt William C. , Robertson Michael , Joste Nancy E. , Castle Philip E. , Benard Vicki B. , Wheeler Cosette M.
Published: April 2023

PDF file - 142K, Supplemental Consort Diagram. Number of tests, screening tests and women screened in the New Mexico HPV Pap Registry 2008-2011 Supplemental Table 1. Women with any cervical cytology test or screening cytology test by age group at time of test and year. Supplemental Table 2. Cervical cytology results from screening tests by year - overall and by age.
Supplementary Table 1 from Patient Navigation Significantly Reduces Delays in Breast Cancer Diagnosis in the District of Columbia
Authors: Hoffman Heather J. , LaVerda Nancy L. , Young Heather A. , Levine Paul H. , Alexander Lisa M. , Brem Rachel , Caicedo Larisa , Eng-Wong Jennifer , Frederick Wayne , Funderburk William , Huerta Elmer , Swain Sandra , Patierno Steven R.
Published: April 2023

PDF file - 73K, Descriptive summary statistics for diagnostic time (in days)
Supplementary Table 1 from Estimated Mean Sojourn Time Associated with Hemoccult SENSA for Detection of Proximal and Distal Colorectal Cancer
Authors: Zheng Wenying , Rutter Carolyn M.
Published: April 2023

PDF file, 50K, Supplementary Information: Patterns of Censoring due to CRC Tests Across Age Groups and Time Periods.
Supplemental Table S3 from Physical Activity and Risk of Male Breast Cancer
Authors: Arem Hannah , Brinton Louise A. , Moore Steven C. , Gapstur Susan M. , Habel Laurel A. , Johnson Kenneth , Kolonel Laurence N. , McCormack Valerie A. , Michels Karin B. , Sesso Howard D. , Ursin Giske , Van Den Eeden Stephen K. , Weiderpass Elisabete , Cook Michael B. , Matthews Charles E.
Published: April 2023

Hazard ratios stratified by potential effect modifiers
Supplemental Table S1 from Physical Activity and Risk of Male Breast Cancer
Authors: Arem Hannah , Brinton Louise A. , Moore Steven C. , Gapstur Susan M. , Habel Laurel A. , Johnson Kenneth , Kolonel Laurence N. , McCormack Valerie A. , Michels Karin B. , Sesso Howard D. , Ursin Giske , Van Den Eeden Stephen K. , Weiderpass Elisabete , Cook Michael B. , Matthews Charles E.
Published: April 2023

Key characteristics of the pooled studies
Supplemental Methods from The Effect of Patient and Contextual Characteristics on Racial/Ethnic Disparity in Breast Cancer Mortality
Authors: Sposto Richard , Keegan Theresa H.M. , Vigen Cheryl , Kwan Marilyn L. , Bernstein Leslie , John Esther M. , Cheng Iona , Yang Juan , Koo Jocelyn , Kurian Allison W. , Caan Bette J. , Lu Yani , Monroe Kristine R. , Shariff-Marco Salma , Gomez Scarlett Lin , Wu Anna H.
Published: April 2023

Addition methods describing construction of the cohort, data harmonization, and statistical details
Supplementary Data from Transcriptomic Microenvironment of Lung Adenocarcinoma
Authors: Bossé Yohan , Sazonova Olga , Gaudreault Nathalie , Bastien Nathalie , Conti Massimo , Pagé Sylvain , Trahan Sylvain , Couture Christian , Joubert Philippe
Published: April 2023

Supplementary data containing additional details about materials and methods, titles for Supplementary Tables 1 to 10, and Supplementary Figures 1 to 10 including legends.
Supplementary Table 2 from Costs Associated with Management of Cervical Human Papillomavirus-Related Conditions
Authors: Kruzikas Denise , Smith Jennifer S. , Harley Carolyn , Buzinec Paul
Published: April 2023

PDF file, 59K, Appendix Table B: Procedures by Age Group.
Supplementary Figure legends from Low-Coverage Exome Sequencing Screen in Formalin-Fixed Paraffin-Embedded Tumors Reveals Evidence of Exposure to Carcinogenic Aristolochic Acid
Authors: Castells Xavier , Karanović Sandra , Ardin Maude , Tomić Karla , Xylinas Evanguelos , Durand Geoffroy , Villar Stephanie , Forey Nathalie , Le Calvez-Kelm Florence , Voegele Catherine , Karlović Krešimir , Mišić Maja , Dittrich Damir , Dolgalev Igor , McKay James , Shariat Shahrokh F. , Sidorenko Viktoria S. , Fernandes Andrea , Heguy Adriana , Dickman Kathleen G. , Olivier Magali , Grollman Arthur P. , Jelaković Bojan , Zavadil Jiri
Published: April 2023

Supplementary Figure legends
Supplementary Figure S1 from Low-Coverage Exome Sequencing Screen in Formalin-Fixed Paraffin-Embedded Tumors Reveals Evidence of Exposure to Carcinogenic Aristolochic Acid
Authors: Castells Xavier , Karanović Sandra , Ardin Maude , Tomić Karla , Xylinas Evanguelos , Durand Geoffroy , Villar Stephanie , Forey Nathalie , Le Calvez-Kelm Florence , Voegele Catherine , Karlović Krešimir , Mišić Maja , Dittrich Damir , Dolgalev Igor , McKay James , Shariat Shahrokh F. , Sidorenko Viktoria S. , Fernandes Andrea , Heguy Adriana , Dickman Kathleen G. , Olivier Magali , Grollman Arthur P. , Jelaković Bojan , Zavadil Jiri
Published: April 2023

Supplementary Figure S1. Identification of AA signature by ultra-low coverage sequencing reads.
Supplemental Table 1. Power calculations for replication analyses from Comprehensive Evaluation of Medical Conditions Associated with Risk of Non-Hodgkin Lymphoma using Medicare Claims (“MedWAS”)
Authors: Engels Eric A. , Parsons Ruth , Besson Caroline , Morton Lindsay M. , Enewold Lindsey , Ricker Winnie , Yanik Elizabeth L. , Arem Hannah , Austin April A. , Pfeiffer Ruth M.
Published: April 2023

Power calculations for replication analyses
Supplementary Table 6 from Tissue Biomarkers for Prognosis of Prostate Cancer: A Systematic Review and Meta-analysis
Authors: Zhao Liuyang , Yu Na , Guo Tianfang , Hou Yixuan , Zeng Zongyue , Yang Xiaorong , Hu Ping , Tang Xi , Wang Jian , Liu Manran
Published: April 2023

PDF file - 103KB, Supplementary Table S6. Proteins of the eligible studies related to DFS organized according to Hanahan-Weinberg functional capabilities.
Supplementary Table 4 from Tissue Biomarkers for Prognosis of Prostate Cancer: A Systematic Review and Meta-analysis
Authors: Zhao Liuyang , Yu Na , Guo Tianfang , Hou Yixuan , Zeng Zongyue , Yang Xiaorong , Hu Ping , Tang Xi , Wang Jian , Liu Manran
Published: April 2023

PDF file - 73KB, Supplementary Table S4. Proteins of the eligible studies related to ACM organized according to Hanahan-Weinberg functional capabilities.
Supplementary Table 1 from Tissue Biomarkers for Prognosis of Prostate Cancer: A Systematic Review and Meta-analysis
Authors: Zhao Liuyang , Yu Na , Guo Tianfang , Hou Yixuan , Zeng Zongyue , Yang Xiaorong , Hu Ping , Tang Xi , Wang Jian , Liu Manran
Published: April 2023

XLSX file - 25KB, Supplementary Table S1. Summary of 40 univariate designed studies.
Supplementary Table 1 from Projecting Benefits and Harms of Novel Cancer Screening Biomarkers: A Study of PCA3 and Prostate Cancer
Authors: Birnbaum Jeanette K. , Feng Ziding , Gulati Roman , Fan Jing , Lotan Yair , Wei John T. , Etzioni Ruth
Published: April 2023

Supplementary Table 1 - Data and assumptions used to construct each element of the natural history model of prostate cancer and the extension incorporating PCA3.
Supplemental table 1 from Association between Upper Digestive Tract Microbiota and Cancer-Predisposing States in the Esophagus and Stomach
Authors: Yu Guoqin , Gail Mitchell H. , Shi Jianxin , Klepac-Ceraj Vanja , Paster Bruce J. , Dye Bruce A. , Wang Guo-Qing , Wei Wen-Qiang , Fan Jin-Hu , Qiao You-Lin , Dawsey Sanford M. , Freedman Neal D. , Abnet Christian C.
Published: April 2023

Odds ratio and 95% confidence intervals for the associations between presence of individual strain/species and Esophageal Squamous Dysplasia (ESD) status
Supplemental Figure 1 from Association between Upper Digestive Tract Microbiota and Cancer-Predisposing States in the Esophagus and Stomach
Authors: Yu Guoqin , Gail Mitchell H. , Shi Jianxin , Klepac-Ceraj Vanja , Paster Bruce J. , Dye Bruce A. , Wang Guo-Qing , Wei Wen-Qiang , Fan Jin-Hu , Qiao You-Lin , Dawsey Sanford M. , Freedman Neal D. , Abnet Christian C.
Published: April 2023

Subjects grouped into clusters (designated as A, B, C) by the UniFrac distance matrix according to the UPGMA method. Note that the figure was constructed from 659 subjects. We included 333 subjects for this study because we did not have serum pepsinogen I and II measurements available for all 659 subjects
Supplemental Table 1-4 and Supplemental Figure 1 from Alcohol Intake and Breast Cancer Risk in African American Women from the AMBER Consortium
Authors: Williams Lindsay A. , Olshan Andrew F. , Hong Chi-Chen , Bandera Elisa V. , Rosenberg Lynn , Cheng Ting-Yuan David , Lunetta Kathryn L. , McCann Susan E. , Poole Charles , Kolonel Laurence N. , Palmer Julie R. , Ambrosone Christine B. , Troester Melissa A.
Published: April 2023

Supplemental Table 1. Covariate characteristics of cases controls in the AMBER Consortium stratified by study; Supplemental Table 2. Recent alcohol intake (drinks per week) in relation to invasive breast cancer stratified by smoking status in the AMBER Consortium; Supplemental Table 3. Recent alcohol intake (drinks per week) in relation to invasive breast cancer stratified by lifetime duration of oral contraceptive use in the AMBER consortium; Supplemental Table 4. Recent alcohol intake (drinks per week) in relation to invasive breast cancer stratified by menopausal status in the AMBER consortium; Supplemental Figure 1. Flexible modeling of drinks per week as a squared term versus the log odds (95% confidence interval) of breast cancer in the AMBER consortium