bluuebunny/crossref_metadata_2025 huggingface dataset:
Supplementary Tables 1-5 from Nanobody-Based Targeting of the Macrophage Mannose Receptor for Effective In Vivo Imaging of Tumor-Associated Macrophages
Authors: Movahedi Kiavash , Schoonooghe Steve , Laoui Damya , Houbracken Isabelle , Waelput Wim , Breckpot Karine , Bouwens Luc , Lahoutte Tony , De Baetselier Patrick , Raes Geert , Devoogdt Nick , Van Ginderachter Jo A.
Published: March 2023

PDF file - 69K, This file contains Supplementary Tables Supplementary Table 1. Sequences of primers Supplementary Table 2. SPR kinetic and equilibrium parameters for anti-MMR Nanobodies and bivalent Nanobody cl1 derivatives. Supplementary Table 3. Uptake values of 99mTc-labeled anti-MMR Nb cl1, cl3 and Nb BCII10 in naive WT and MMR-KO mice, based on dissection at 1 hour post injection. Supplementary Table 4. Uptake values of 99mTc-labeled anti-MMR Nb in s.c. 3LL-R tumor-bearing WT or CCR2-KO mice, based on dissection at 3 hours post injection Supplementary Table 5. Uptake values of 99mTc-labeled bivalent anti-MMR Nbs in naive WT and MMR-KO mice, based on dissection at 1 hour post injection
Supplementary Figures 1-14 from Distinct Transcriptional Programs Mediated by the Ligand-Dependent Full-Length Androgen Receptor and Its Splice Variants in Castration-Resistant Prostate Cancer
Authors: Hu Rong , Lu Changxue , Mostaghel Elahe A. , Yegnasubramanian Srinivasan , Gurel Meltem , Tannahill Clare , Edwards Joanne , Isaacs William B. , Nelson Peter S. , Bluemn Eric , Plymate Stephen R. , Luo Jun
Published: March 2023

PDF file - 971K, Supplemental Figure 1. PSA promoter activity in LNCaP and LNCaP 95 cells Supplemental Figure 2-12. Analysis of AR-FL and AR-V protein and mRNA expression and the effect of their expression changes on target genes by gene set enrichment analysis. Supplemental Figure 13. Lack of AR-V7 response by androgen deprivation in LNCaP and CWR22Rv1 cells. Supplemental Figure 14. Nuclear staining for AR-FL, AR-V7, and UBE2C in CRPC specimens.
Supplementary Table 1 from Impaired IFN-α Production by Plasmacytoid Dendritic Cells Favors Regulatory T-cell Expansion That May Contribute to Breast Cancer Progression
Authors: Sisirak Vanja , Faget Julien , Gobert Michael , Goutagny Nadège , Vey Nelly , Treilleux Isabelle , Renaudineau Sarah , Poyet Gaelle , Labidi-Galy Sana Intidhar , Goddard-Leon Sophie , Durand Isabelle , Le Mercier Isabelle , Bajard Agathe , Bachelot Thomas , Puisieux Alain , Puisieux Isabelle , Blay Jean-Yves , Ménétrier-Caux Christine , Caux Christophe , Bendriss-Vermare Nathalie
Published: March 2023

PDF file, 77K, Correlations between tumor characteristics and TA(p/m)DC.
Supplementary Table 3 from Expression of the PTTG1 Oncogene Is Associated with Aggressive Clear Cell Renal Cell Carcinoma
Authors: Wondergem Bill , Zhang Zhongfa , Huang Dachuan , Ong Choon Kiat , Koeman Julie , Hof David Van't , Petillo David , Ooi Aikseng , Anema John , Lane Brian , Kahnoski Richard J. , Furge Kyle A. , Teh Bin Tean
Published: March 2023

PDF file, 27K, FISH Samples: Clinical Features and Maximum PTTG1 Copy Number. Interphase FISH analysis of ccRCC tumor touch preparations. FISH probe locations are shown in Figure 1a.
Supplementary Table 1 from Expression of the PTTG1 Oncogene Is Associated with Aggressive Clear Cell Renal Cell Carcinoma
Authors: Wondergem Bill , Zhang Zhongfa , Huang Dachuan , Ong Choon Kiat , Koeman Julie , Hof David Van't , Petillo David , Ooi Aikseng , Anema John , Lane Brian , Kahnoski Richard J. , Furge Kyle A. , Teh Bin Tean
Published: March 2023

XLS file, 27K, Known Chromosome 5q Oncogenes.
Supplementary Methods from Expression of the PTTG1 Oncogene Is Associated with Aggressive Clear Cell Renal Cell Carcinoma
Authors: Wondergem Bill , Zhang Zhongfa , Huang Dachuan , Ong Choon Kiat , Koeman Julie , Hof David Van't , Petillo David , Ooi Aikseng , Anema John , Lane Brian , Kahnoski Richard J. , Furge Kyle A. , Teh Bin Tean
Published: March 2023

PDF file, 94K.
Supplementary Figure Legend from Expression of the PTTG1 Oncogene Is Associated with Aggressive Clear Cell Renal Cell Carcinoma
Authors: Wondergem Bill , Zhang Zhongfa , Huang Dachuan , Ong Choon Kiat , Koeman Julie , Hof David Van't , Petillo David , Ooi Aikseng , Anema John , Lane Brian , Kahnoski Richard J. , Furge Kyle A. , Teh Bin Tean
Published: March 2023

PDF file, 8K.
Supplementary Figure 1 from p53/HMGB1 Complexes Regulate Autophagy and Apoptosis
Authors: Livesey Kristen M. , Kang Rui , Vernon Philip , Buchser William , Loughran Patricia , Watkins Simon C. , Zhang Lin , Manfredi James J. , Zeh Herbert J. , Li Luyuan , Lotze Michael T. , Tang Daolin
Published: March 2023

PDF file - 323K
Supplementary Methods from DEDD Interacts with PI3KC3 to Activate Autophagy and Attenuate Epithelial–Mesenchymal Transition in Human Breast Cancer
Authors: Lv Qi , Wang Wei , Xue Jianfei , Hua Fang , Mu Rong , Lin Heng , Yan Jun , Lv Xiaoxi , Chen Xiaoguang , Hu Zhuo-Wei
Published: March 2023

PDF file - 41K
Supplementary Figure 1 from Suppression of Tak1 Promotes Prostate Tumorigenesis
Authors: Wu Min , Shi Lihong , Cimic Adela , Romero Lina , Sui Guangchao , Lees Cynthia J. , Cline J. Mark , Seals Darren F. , Sirintrapun Joseph S. , McCoy Thomas P. , Liu Wennuan , Kim Jin Woo , Hawkins Gregory A. , Peehl Donna M. , Xu Jianfeng , Cramer Scott D.
Published: March 2023

PDF file - 949K, Expression of Tak1 Is Correlated with High Grade of Tumor in Human Prostate.
Supplementary Figure Legends 1-3 from Antigen Shedding May Improve Efficiencies for Delivery of Antibody-Based Anticancer Agents in Solid Tumors
Authors: Pak Youngshang , Zhang Yujian , Pastan Ira , Lee Byungkook
Published: March 2023

PDF file - 73K
sSupplementary Figure Legends 1-3 from Accumulation of Multipotent Progenitors with a Basal Differentiation Bias during Aging of Human Mammary Epithelia
Authors: Garbe James C. , Pepin Francois , Pelissier Fanny A. , Sputova Klara , Fridriksdottir Agla J. , Guo Diana E. , Villadsen Rene , Park Morag , Petersen Ole W. , Borowsky Alexander D. , Stampfer Martha R. , LaBarge Mark A.
Published: March 2023

PDF file - 62K
Supplementary Table 2 from Interactions of Abiraterone, Eplerenone, and Prednisolone with Wild-type and Mutant Androgen Receptor: A Rationale for Increasing Abiraterone Exposure or Combining with MDV3100
Authors: Richards Juliet , Lim Ai Chiin , Hay Colin W. , Taylor Angela E. , Wingate Anna , Nowakowska Karolina , Pezaro Carmel , Carreira Suzanne , Goodall Jane , Arlt Wiebke , McEwan Iain J. , de Bono Johann S. , Attard Gerhardt
Published: March 2023

PDF file - 55K
Supplementary Figures 1-3, Tables 1-3, Table 7, Legends for Figures 1-3, Tables 1-7 from B-Raf Activation Cooperates with PTEN Loss to Drive c-Myc Expression in Advanced Prostate Cancer
Authors: Wang Jingqiang , Kobayashi Takashi , Floc'h Nicolas , Kinkade Carolyn Waugh , Aytes Alvaro , Dankort David , Lefebvre Celine , Mitrofanova Antonina , Cardiff Robert D. , McMahon Martin , Califano Andrea , Shen Michael M. , Abate-Shen Cory
Published: March 2023

PDF file - 404K, Supplementary Figure 1: Strategy for inducible recombination in the prostate. Supplementary Figure 2: Analyses of tumor regression following castration. Supplementary Figure 3: Gene Set Enrichment Analysis (GSEA). Supplementary Table 1: List of the primers used in this study. Supplementary Table 2: List of antibodies for used in this study. Supplementary Table 3: Summary of phenotypic analyses. Supplementary Table 7: Summary of preclinical data
Supplementary Figure 3 from Twist1 Induces CCL2 and Recruits Macrophages to Promote Angiogenesis
Authors: Low-Marchelli Janine M. , Ardi Veronica C. , Vizcarra Edward A. , van Rooijen Nico , Quigley James P. , Yang Jing
Published: March 2023

PDF file - 618K, CCL2 is not required for Twist1-induced EMT.
Supplementary Text from CXCR2 Expression in Tumor Cells Is a Poor Prognostic Factor and Promotes Invasion and Metastasis in Lung Adenocarcinoma
Authors: Saintigny Pierre , Massarelli Erminia , Lin Steven , Ahn Young-Ho , Chen Yulong , Goswami Sangeeta , Erez Baruch , O'Reilly Michael S. , Liu Diane , Lee J. Jack , Zhang Li , Ping Yuan , Behrens Carmen , Solis Soto Luisa M. , Heymach John V. , Kim Edward S. , Herbst Roy S. , Lippman Scott M. , Wistuba Ignacio I. , Hong Waun Ki , Kurie Jonathan M. , Koo Ja Seok
Published: March 2023

PDF file - 110K, Supplemental Material and Methods, Supplementary Tables 1 and 2: Univariate Cox model assessing the effect of covariates on overall survival, Supplementary Table 3: Final multicovariate Cox models assessing the effect of covariates on recurrence-free survival in the whole population (N=262), Supplemental Figure Legends
Supplementary Figure Legends 1-4 from NF-κB Activity Regulates Mesenchymal Stem Cell Accumulation at Tumor Sites
Authors: Uchibori Ryosuke , Tsukahara Tomonori , Mizuguchi Hiroyuki , Saga Yasushi , Urabe Masashi , Mizukami Hiroaki , Kume Akihiro , Ozawa Keiya
Published: March 2023

PDF file - 103K
Supplementary Figure 2 from NF-κB Activity Regulates Mesenchymal Stem Cell Accumulation at Tumor Sites
Authors: Uchibori Ryosuke , Tsukahara Tomonori , Mizuguchi Hiroyuki , Saga Yasushi , Urabe Masashi , Mizukami Hiroaki , Kume Akihiro , Ozawa Keiya
Published: March 2023

PDF file - 115K, Analysis of transduction efficiency and transgene expression levels
Supplementary Figures 1-3, Table 1 from RNAi-Mediated Targeting of Noncoding and Coding Sequences in DNA Repair Gene Messages Efficiently Radiosensitizes Human Tumor Cells
Authors: Zheng Zhiming , Ng Wooi Loon , Zhang Xiangming , Olson Jeffrey J. , Hao Chunhai , Curran Walter J. , Wang Ya
Published: March 2023

PDF file - 186K
Supplementary Table 2 from Genetic Polymorphisms and Protein Expression of NRF2 and Sulfiredoxin Predict Survival Outcomes in Breast Cancer
Authors: Hartikainen Jaana M. , Tengström Maria , Kosma Veli-Matti , Kinnula Vuokko L. , Mannermaa Arto , Soini Ylermi
Published: March 2023

PDF file - 69K, Analysed SNPs in the NRF2 and the SRXN1 genes
Supplementary Figure 2 from Enhanced Effector Responses in Activated CD8+ T Cells Deficient in Diacylglycerol Kinases
Authors: Riese Matthew J. , Wang Liang-Chuan S. , Moon Edmund K. , Joshi Rohan P. , Ranganathan Anjana , June Carl H. , Koretzky Gary A. , Albelda Steven M.
Published: March 2023

PDF file - 103K, Enhanced expression of FasL and TRAIL in dgk-deficient mesoCAR T cells
Supplementary Figure Legends 1-8 from Genetic Polymorphisms and Protein Expression of NRF2 and Sulfiredoxin Predict Survival Outcomes in Breast Cancer
Authors: Hartikainen Jaana M. , Tengström Maria , Kosma Veli-Matti , Kinnula Vuokko L. , Mannermaa Arto , Soini Ylermi
Published: March 2023

PDF file - 69K
Supplementary Tables 1-8 from β-Catenin/POU5F1/SOX2 Transcription Factor Complex Mediates IGF-I Receptor Signaling and Predicts Poor Prognosis in Lung Adenocarcinoma
Authors: Xu Chuan , Xie Dan , Yu Shi-Cang , Yang Xiao-Jun , He Li-Ru , Yang Jing , Ping Yi-Fang , Wang Bin , Yang Lang , Xu Sen-Lin , Cui Wei , Wang Qing-Liang , Fu Wen-Juan , Liu Qing , Qian Cheng , Cui You-Hong , Rich Jeremy N. , Kung Hsiang-Fu , Zhang Xia , Bian Xiu-Wu
Published: March 2023

Supplementary Tables 1-8 PDF file 178K, Supplementary Table 1. The expression of IGF-1R, �-catenin and POU5F1 in 200 cases of lung adenocarcinoma; Supplementary Table 2. Top 10 gene ontology classification of genes related to the biological process of LACSLCs; Supplementary Table 3. Top 10 gene ontology classification of genes related to the cellular components of LACSLCs; Supplementary Table 4. Top 10 gene ontology classification of genes involved in the molecular functions of LACSLCs; Supplementary Table 5. Expression profile of up-regulated genes identified by cDNA array and qRT-PCR in A549 LACSLCs; Supplementary Table 6. Expression profile of down-regulated genes identified by cDNA array and qRT-PCR in A549 LACSLCs; Supplemental Table 7. Antibodies used for immunostaining analysis; Supplemental Table 8. Sequences of the primers used for qRT-PCR
Supplementary Table 1 from Proteomic Portrait of Human Breast Cancer Progression Identifies Novel Prognostic Markers
Authors: Geiger Tamar , Madden Stephen F. , Gallagher William M. , Cox Juergen , Mann Matthias
Published: March 2023

XLS file - 212K
Supplementary Table 4 from Extensive Promoter DNA Hypermethylation and Hypomethylation Is Associated with Aberrant MicroRNA Expression in Chronic Lymphocytic Leukemia
Authors: Baer Constance , Claus Rainer , Frenzel Lukas P. , Zucknick Manuela , Park Yoon Jung , Gu Lei , Weichenhan Dieter , Fischer Martina , Pallasch Christian Philipp , Herpel Esther , Rehli Michael , Byrd John C. , Wendtner Clemens-Martin , Plass Christoph
Published: March 2023

PDF file - 42K, Table S4 contains the 128 recurrently methylated miRNA promoter regions
Supplementary Table 1 from Extensive Promoter DNA Hypermethylation and Hypomethylation Is Associated with Aberrant MicroRNA Expression in Chronic Lymphocytic Leukemia
Authors: Baer Constance , Claus Rainer , Frenzel Lukas P. , Zucknick Manuela , Park Yoon Jung , Gu Lei , Weichenhan Dieter , Fischer Martina , Pallasch Christian Philipp , Herpel Esther , Rehli Michael , Byrd John C. , Wendtner Clemens-Martin , Plass Christoph
Published: March 2023

PDF file - 25K, Table S1 describes patient characteristics
Supplementary Figures 7 and 8 from Neuropilin-1–Dependent Regulation of EGF-Receptor Signaling
Authors: Rizzolio Sabrina , Rabinowicz Noa , Rainero Elena , Lanzetti Letizia , Serini Guido , Norman Jim , Neufeld Gera , Tamagnone Luca
Published: March 2023

PDF file, 128K, Suppl. Fig. 7. Surface localization of EGFR and ligand-binding ability is not affected by Nrp1 silencing. Suppl. Fig. 8. EGFR endocytosis is impaired upon Nrp1 silencing.
Supplementary Table 2 from Unphosphorylated STAT1 Promotes Sarcoma Development through Repressing Expression of Fas and Bad and Conferring Apoptotic Resistance
Authors: Zimmerman Mary A. , Rahman Nur-Taz , Yang Dafeng , Lahat Guy , Lazar Alexander J. , Pollock Raphael E. , Lev Dina , Liu Kebin
Published: March 2023

PDF file - 7K, List of PCR Primers
Supplementary Figures 12 and 13 from Neuropilin-1–Dependent Regulation of EGF-Receptor Signaling
Authors: Rizzolio Sabrina , Rabinowicz Noa , Rainero Elena , Lanzetti Letizia , Serini Guido , Norman Jim , Neufeld Gera , Tamagnone Luca
Published: March 2023

PDF file, 269K, Suppl. Fig. 12. Re-expression of Nrp1 wt and truncated variants in gene-silenced cells. Suppl. Fig. 13. Nrp1 MAM domain is crucially involved in EGFR clustering and intracellular signaling.
Supplementary Figure 1 from Unphosphorylated STAT1 Promotes Sarcoma Development through Repressing Expression of Fas and Bad and Conferring Apoptotic Resistance
Authors: Zimmerman Mary A. , Rahman Nur-Taz , Yang Dafeng , Lahat Guy , Lazar Alexander J. , Pollock Raphael E. , Lev Dina , Liu Kebin
Published: March 2023

PDF file - 73K, Model of uSTAT1 and pSTAT1 crosstalk network in regulation of apoptosis in sarcoma cells
Supplementary Figures 1 and 2 from Neuropilin-1–Dependent Regulation of EGF-Receptor Signaling
Authors: Rizzolio Sabrina , Rabinowicz Noa , Rainero Elena , Lanzetti Letizia , Serini Guido , Norman Jim , Neufeld Gera , Tamagnone Luca
Published: March 2023

PDF file, 198K, Suppl. Fig. 1. Neuropilin-1 but not Neuropilin-2 expression is required for cancer cell growth and viability. Suppl. Fig. 2. Nrp1 depletion inhibits AKT activation and promotes cellular apoptosis.
Supplementary Methods from Acquired Resistance to EGFR Inhibitors Is Associated with a Manifestation of Stem Cell–like Properties in Cancer Cells
Authors: Shien Kazuhiko , Toyooka Shinichi , Yamamoto Hiromasa , Soh Junichi , Jida Masaru , Thu Kelsie L. , Hashida Shinsuke , Maki Yuho , Ichihara Eiki , Asano Hiroaki , Tsukuda Kazunori , Takigawa Nagio , Kiura Katsuyuki , Gazdar Adi F. , Lam Wan L. , Miyoshi Shinichiro
Published: March 2023

PDF file - 82K, Details about reagents used in cell proliferation assay and antibodies for Western blot, fluorescence immunocytochemistry, and immunohistochemistry.
Supplementary Figure 2 from Acquired Resistance to EGFR Inhibitors Is Associated with a Manifestation of Stem Cell–like Properties in Cancer Cells
Authors: Shien Kazuhiko , Toyooka Shinichi , Yamamoto Hiromasa , Soh Junichi , Jida Masaru , Thu Kelsie L. , Hashida Shinsuke , Maki Yuho , Ichihara Eiki , Asano Hiroaki , Tsukuda Kazunori , Takigawa Nagio , Kiura Katsuyuki , Gazdar Adi F. , Lam Wan L. , Miyoshi Shinichiro
Published: March 2023

PDF file - 403K, EMT and cancer stem cell-related marker expression in acquired resistance to EGFR-TKI cell lines.
Supplementary Figure Legend from Human TH17 Immune Cells Specific for the Tumor Antigen MAGE-A3 Convert to IFN-γ–Secreting Cells as They Differentiate into Effector T Cells In Vivo
Authors: Hamaï Ahmed , Pignon Pascale , Raimbaud Isabelle , Duperrier-Amouriaux Karine , Senellart Hélène , Hiret Sandrine , Douillard Jean-Yves , Bennouna Jaafar , Ayyoub Maha , Valmori Danila
Published: March 2023

Supplementary Figure Legend from Human TH17 Immune Cells Specific for the Tumor Antigen MAGE-A3 Convert to IFN-γ–Secreting Cells as They Differentiate into Effector T Cells In Vivo
Supplementary Table 2 from Distinct Patterns of Dysregulated Expression of Enzymes Involved in Androgen Synthesis and Metabolism in Metastatic Prostate Cancer Tumors
Authors: Mitsiades Nicholas , Sung Clifford C. , Schultz Nikolaus , Danila Daniel C. , He Bin , Eedunuri Vijay Kumar , Fleisher Martin , Sander Chris , Sawyers Charles L. , Scher Howard I.
Published: March 2023

XLS file - 18K, Log2-based expression (average and SD) of mRNA transcripts for AR and genes involved in androgen metabolism in normal prostate tissue, primary PCas and metastatic PCas
Supplementary Figures 1-4, Tables 1-4 from A Genome-Wide Search for Promoters That Respond to Increased MYCN Reveals Both New Oncogenic and Tumor Suppressor MicroRNAs Associated with Aggressive Neuroblastoma
Authors: Shohet Jason M. , Ghosh Rajib , Coarfa Cristian , Ludwig Andrew , Benham Ashley L. , Chen Zaowen , Patterson Danielle M. , Barbieri Eveline , Mestdagh Pieter , Sikorski Denae N. , Milosavljevic Aleksandar , Kim Eugene S. , Gunaratne Preethi H.
Published: March 2023

Supplementary Figures 1-4, Tables 1-4 from A Genome-Wide Search for Promoters That Respond to Increased MYCN Reveals Both New Oncogenic and Tumor Suppressor MicroRNAs Associated with Aggressive Neuroblastoma
Supplementary Video 9 from Basal but not Luminal Mammary Epithelial Cells Require PI3K/mTOR Signaling for Ras-Driven Overgrowth
Authors: Plichta Kristin A. , Mathers Jessica L. , Gestl Shelley A. , Glick Adam B. , Gunther Edward J.
Published: March 2023

MOV file - 2.3MB, Effects of mTor Inhibitor rapamycin on Ras-driven basal MEC overgrowth. Representative video depicting an organoid prepared from a Dox-naive basalRas/GFP (K5-rtTA/TGFP/TRAS) mouse cultured in the presence of both Dox and rapamycin in 3D
Supplementary Video 5 from Basal but not Luminal Mammary Epithelial Cells Require PI3K/mTOR Signaling for Ras-Driven Overgrowth
Authors: Plichta Kristin A. , Mathers Jessica L. , Gestl Shelley A. , Glick Adam B. , Gunther Edward J.
Published: March 2023

MOV file - 2.1MB, Effects of MEK Inhibitor PD0325901 on Ras-driven basal MEC overgrowth. Representative video depicting an organoid prepared from a Dox-naive basalRas/GFP (K5-rtTA/TGFP/TRAS) mouse cultured in the presence of both Dox and PD0325901 in 3D
Supplementary Table 2 from Hedgehog Signaling Blockade Delays Hepatocarcinogenesis Induced by Hepatitis B Virus X Protein
Authors: Arzumanyan Alla , Sambandam Vaishnavi , Clayton Marcia M. , Choi Steve S. , Xie Guanhua , Diehl Anna Mae , Yu Dae-Yeul , Feitelson Mark A.
Published: March 2023

PDF file - 67K, Summary of staining for HBx, Shh, Ihh, PTCH1 and Gli2 and correlation with HBx expression in clinical samples
Supplementary Figure 1 from Hedgehog Signaling Blockade Delays Hepatocarcinogenesis Induced by Hepatitis B Virus X Protein
Authors: Arzumanyan Alla , Sambandam Vaishnavi , Clayton Marcia M. , Choi Steve S. , Xie Guanhua , Diehl Anna Mae , Yu Dae-Yeul , Feitelson Mark A.
Published: March 2023

PDF file - 4.3MB
Supplementary Figure 1 from Multiple Roles of p53-Related Pathways in Somatic Cell Reprogramming and Stem Cell Differentiation
Authors: Yi Lan , Lu Chiwei , Hu Wenwei , Sun Yvonne , Levine Arnold J.
Published: March 2023

PDF file - 14.9MB, Loss of P53 expedited the kinetics of MEF cell reprogramming
Supplementary Material and Methods and Figure Legends from Metabolic Associations of Reduced Proliferation and Oxidative Stress in Advanced Breast Cancer
Authors: Jerby Livnat , Wolf Lior , Denkert Carsten , Stein Gideon Y. , Hilvo Mika , Oresic Matej , Geiger Tamar , Ruppin Eytan
Published: March 2023

PDF file, 247K, The file includes robustness analysis, a small-scale example of MPA application, MPA's validation and supplementary methods.
Supplementary Methods, Figure Legends 1-8 from Sef Downregulation by Ras Causes MEK1/2 to Become Aberrantly Nuclear Localized Leading to Polyploidy and Neoplastic Transformation
Authors: Duhamel Stéphanie , Hébert Josée , Gaboury Louis , Bouchard Amélie , Simon Ronald , Sauter Guido , Basik Mark , Meloche Sylvain
Published: March 2023

PDF file - 136K
Supplementary Figure 2 from Sef Downregulation by Ras Causes MEK1/2 to Become Aberrantly Nuclear Localized Leading to Polyploidy and Neoplastic Transformation
Authors: Duhamel Stéphanie , Hébert Josée , Gaboury Louis , Bouchard Amélie , Simon Ronald , Sauter Guido , Basik Mark , Meloche Sylvain
Published: March 2023

PDF file - 3.3MB
Supplementary Figure 6 from Densely Granulated Murine NK Cells Eradicate Large Solid Tumors
Authors: Liu Rebecca B. , Engels Boris , Arina Ainhoa , Schreiber Karin , Hyjek Elizabeth , Schietinger Andrea , Binder David C. , Butz Eric , Krausz Thomas , Rowley Donald A. , Jabri Bana , Schreiber Hans
Published: March 2023

PDF file - 81K
Supplementary Figure 5 from Densely Granulated Murine NK Cells Eradicate Large Solid Tumors
Authors: Liu Rebecca B. , Engels Boris , Arina Ainhoa , Schreiber Karin , Hyjek Elizabeth , Schietinger Andrea , Binder David C. , Butz Eric , Krausz Thomas , Rowley Donald A. , Jabri Bana , Schreiber Hans
Published: March 2023

PDF file - 59K
Supplementary Figure 9 from Concomitant Targeting of Tumor Cells and Induction of T-cell Response Synergizes to Effectively Inhibit Trastuzumab-Resistant Breast Cancer
Authors: Wang Qingfei , Li Shau-Hsuan , Wang Hai , Xiao Yi , Sahin Ozgur , Brady Samuel W. , Li Ping , Ge Hailiang , Jaffee Elizabeth M. , Muller William J. , Hortobagyi Gabriel N. , Yu Dihua
Published: March 2023

PDF file - 24K, HER2/Neu antibody and TCN plus anti-CTLA-4 mAb triple combination treatment increased serum IFN-gamma level
Supplementary Figure 8 from Concomitant Targeting of Tumor Cells and Induction of T-cell Response Synergizes to Effectively Inhibit Trastuzumab-Resistant Breast Cancer
Authors: Wang Qingfei , Li Shau-Hsuan , Wang Hai , Xiao Yi , Sahin Ozgur , Brady Samuel W. , Li Ping , Ge Hailiang , Jaffee Elizabeth M. , Muller William J. , Hortobagyi Gabriel N. , Yu Dihua
Published: March 2023

PDF file - 206K, No significant changes in the number of tumor infiltrating T cells (including CD8+ and CD4+ ) upon the addition of anti-CTLA-4 mAb to HER2/Neu antibody and triciribine combination treatment
Supplementary Figures 1-9 from Defining NOTCH3 Target Genes in Ovarian Cancer
Authors: Chen Xu , Thiaville Michelle M. , Chen Li , Stoeck Alexander , Xuan Jianhua , Gao Min , Shih Ie-Ming , Wang Tian-Li
Published: March 2023

PDF file - 381K
Supplementary Figure 3 from Notch3 Functions as a Tumor Suppressor by Controlling Cellular Senescence
Authors: Cui Hang , Kong Yahui , Xu Mei , Zhang Hong
Published: March 2023

PDF file - 222K, Data showing Notch3 induces senescence in WS1 cells.
Supplementary Video 2 from Pak1 Kinase Links ErbB2 to β-Catenin in Transformation of Breast Epithelial Cells
Authors: Arias-Romero Luis E. , Villamar-Cruz Olga , Huang Min , Hoeflich Klaus P. , Chernoff Jonathan
Published: March 2023

Video File - 1702K, Video of KO cells.
Supplementary Video 1 from Pak1 Kinase Links ErbB2 to β-Catenin in Transformation of Breast Epithelial Cells
Authors: Arias-Romero Luis E. , Villamar-Cruz Olga , Huang Min , Hoeflich Klaus P. , Chernoff Jonathan
Published: March 2023

Video File - 2615K, Video of WT cells.
Supplementary Figure 7 from Truncated DNMT3B Isoform DNMT3B7 Suppresses Growth, Induces Differentiation, and Alters DNA Methylation in Human Neuroblastoma
Authors: Ostler Kelly R. , Yang Qiwei , Looney Timothy J. , Zhang Li , Vasanthakumar Aparna , Tian Yufeng , Kocherginsky Masha , Raimondi Stacey L. , DeMaio Jessica G. , Salwen Helen R. , Gu Song , Chlenski Alexandre , Naranjo Arlene , Gill Amy , Peddinti Radhika , Lahn Bruce T. , Cohn Susan L. , Godley Lucy A.
Published: March 2023

PDF file, 106K, Endogenous levels of DNMT1, DNMT3A, and DNMT3B in DNMT3B7-expressing LA1-55n cells.
Supplementary Figure 6 from Truncated DNMT3B Isoform DNMT3B7 Suppresses Growth, Induces Differentiation, and Alters DNA Methylation in Human Neuroblastoma
Authors: Ostler Kelly R. , Yang Qiwei , Looney Timothy J. , Zhang Li , Vasanthakumar Aparna , Tian Yufeng , Kocherginsky Masha , Raimondi Stacey L. , DeMaio Jessica G. , Salwen Helen R. , Gu Song , Chlenski Alexandre , Naranjo Arlene , Gill Amy , Peddinti Radhika , Lahn Bruce T. , Cohn Susan L. , Godley Lucy A.
Published: March 2023

PDF file, 83K, DNMT3B7 expression in LA1-55n transduced cells by RNA-Sequencing.
Supplementary Figure 5 from Truncated DNMT3B Isoform DNMT3B7 Suppresses Growth, Induces Differentiation, and Alters DNA Methylation in Human Neuroblastoma
Authors: Ostler Kelly R. , Yang Qiwei , Looney Timothy J. , Zhang Li , Vasanthakumar Aparna , Tian Yufeng , Kocherginsky Masha , Raimondi Stacey L. , DeMaio Jessica G. , Salwen Helen R. , Gu Song , Chlenski Alexandre , Naranjo Arlene , Gill Amy , Peddinti Radhika , Lahn Bruce T. , Cohn Susan L. , Godley Lucy A.
Published: March 2023

PDF file, 346K, DNA methylation of Satellite 2 repetitive elements.
Supplementary Figure 3 from Truncated DNMT3B Isoform DNMT3B7 Suppresses Growth, Induces Differentiation, and Alters DNA Methylation in Human Neuroblastoma
Authors: Ostler Kelly R. , Yang Qiwei , Looney Timothy J. , Zhang Li , Vasanthakumar Aparna , Tian Yufeng , Kocherginsky Masha , Raimondi Stacey L. , DeMaio Jessica G. , Salwen Helen R. , Gu Song , Chlenski Alexandre , Naranjo Arlene , Gill Amy , Peddinti Radhika , Lahn Bruce T. , Cohn Susan L. , Godley Lucy A.
Published: March 2023

PDF file, 58K, Establishment of KCNR neuroblastoma cells overexpressing DNMT3B7.
Supplementary Figure 1 from Truncated DNMT3B Isoform DNMT3B7 Suppresses Growth, Induces Differentiation, and Alters DNA Methylation in Human Neuroblastoma
Authors: Ostler Kelly R. , Yang Qiwei , Looney Timothy J. , Zhang Li , Vasanthakumar Aparna , Tian Yufeng , Kocherginsky Masha , Raimondi Stacey L. , DeMaio Jessica G. , Salwen Helen R. , Gu Song , Chlenski Alexandre , Naranjo Arlene , Gill Amy , Peddinti Radhika , Lahn Bruce T. , Cohn Susan L. , Godley Lucy A.
Published: March 2023

PDF file, 2695K, Aberrant DNMT3B expression and global DNA methylation in primary neuroblastoma tumors.
Supplementary Figures 1-7, Tables 1-2 from Genetic Screening for Synthetic Lethal Partners of Polynucleotide Kinase/Phosphatase: Potential for Targeting SHP-1–Depleted Cancers
Authors: Mereniuk Todd R. , Maranchuk Robert A. , Schindler Anja , Penner-Chea Jonathan , Freschauf Gary K. , Hegazy Samar , Lai Raymond , Foley Edan , Weinfeld Michael
Published: March 2023

PDF file - 2MB
Supplementary Figure 5 from Immunogenic Tumor Cell Death Induced by Chemoradiotherapy in Patients with Esophageal Squamous Cell Carcinoma
Authors: Suzuki Yoshiyuki , Mimura Kousaku , Yoshimoto Yuya , Watanabe Mitsuaki , Ohkubo Yu , Izawa Shinichirou , Murata Kazutoshi , Fujii Hideki , Nakano Takashi , Kono Koji
Published: March 2023

PDF file - 58K, Maturation phenotypes of HMGB1-treated DCs by flow cytometry
Supplementary Figure 3 from Immunogenic Tumor Cell Death Induced by Chemoradiotherapy in Patients with Esophageal Squamous Cell Carcinoma
Authors: Suzuki Yoshiyuki , Mimura Kousaku , Yoshimoto Yuya , Watanabe Mitsuaki , Ohkubo Yu , Izawa Shinichirou , Murata Kazutoshi , Fujii Hideki , Nakano Takashi , Kono Koji
Published: March 2023

PDF file - 109K, In vitro treatment of ESCC with chemo-drugs (5FU + CDDP + Docetaxel on day 1) or 30Gy-irradiation (10Gy irradiation on day 1, day 2, and day 3)
Supplementary Table 1 from Plasmacytoid Dendritic Cells Promote Immunosuppression in Ovarian Cancer via ICOS Costimulation of Foxp3+ T-Regulatory Cells
Authors: Conrad Curdin , Gregorio Josh , Wang Yi-Hong , Ito Tomoki , Meller Stephan , Hanabuchi Shino , Anderson Sonya , Atkinson Neely , Ramirez Pedro T. , Liu Yong-Jun , Freedman Ralph , Gilliet Michel
Published: March 2023

PDF file - 57K, Clinical characteristics of patients with epithelial ovarian cancer
Supplementary Figure 2 from Immunogenic Tumor Cell Death Induced by Chemoradiotherapy in Patients with Esophageal Squamous Cell Carcinoma
Authors: Suzuki Yoshiyuki , Mimura Kousaku , Yoshimoto Yuya , Watanabe Mitsuaki , Ohkubo Yu , Izawa Shinichirou , Murata Kazutoshi , Fujii Hideki , Nakano Takashi , Kono Koji
Published: March 2023

PDF file - 50K, Correlation of serum HMGB1 level with grade of antigen-specific T cell responses (Spot-forming cells) by ELISPOT assay against each antigen in patients receiving chemoradiotherapy
Supplementary Figure 1 from Plasmacytoid Dendritic Cells Promote Immunosuppression in Ovarian Cancer via ICOS Costimulation of Foxp3+ T-Regulatory Cells
Authors: Conrad Curdin , Gregorio Josh , Wang Yi-Hong , Ito Tomoki , Meller Stephan , Hanabuchi Shino , Anderson Sonya , Atkinson Neely , Ramirez Pedro T. , Liu Yong-Jun , Freedman Ralph , Gilliet Michel
Published: March 2023

PDF file - 54K, Plasmacytoid dendritic cells do not correlate with ICOS- Foxp3+ T regulatory cells in the tumor microenvironment. Percentages of plasmacytoid dendritic cells (pDC) and percentages of ICOS- Foxp3+ T regulatory cells as analyzed by FACS show no correlation within the tumor microenvironment of ovarian cancer
Supplementary Figure 3 from PGC-1α Promotes the Growth of ErbB2/Neu–Induced Mammary Tumors by Regulating Nutrient Supply
Authors: Klimcakova Eva , Chénard Valérie , McGuirk Shawn , Germain David , Avizonis Daina , Muller William J. , St-Pierre Julie
Published: March 2023

PDF file - 60K
Supplementary Figure 5 from Nrf2 Prevents Initiation but Accelerates Progression through the Kras Signaling Pathway during Lung Carcinogenesis
Authors: Satoh Hironori , Moriguchi Takashi , Takai Jun , Ebina Masahito , Yamamoto Masayuki
Published: March 2023

PDF file - 806K, Summary of lung carcinogenesis in Nrf2+/+-(upper) and Nrf2-/--(lower) mice.
Supplementary Figure 3 from Nrf2 Prevents Initiation but Accelerates Progression through the Kras Signaling Pathway during Lung Carcinogenesis
Authors: Satoh Hironori , Moriguchi Takashi , Takai Jun , Ebina Masahito , Yamamoto Masayuki
Published: March 2023

PDF file - 659K, Experimental design of urethane-induced lung carcinogenesis.
Supplementary Figure 2 from Nrf2 Prevents Initiation but Accelerates Progression through the Kras Signaling Pathway during Lung Carcinogenesis
Authors: Satoh Hironori , Moriguchi Takashi , Takai Jun , Ebina Masahito , Yamamoto Masayuki
Published: March 2023

PDF file - 1637K, Urethane administration induces the cellular cluster formation consisting of inflammatory and epithelial cells in the perivascular region of the Nrf2-/--mouse lung.
Supplementary Table 1 from Dermatan Sulfate Is Involved in the Tumorigenic Properties of Esophagus Squamous Cell Carcinoma
Authors: Thelin Martin A. , Svensson Katrin J. , Shi Xiaofeng , Bagher Mariam , Axelsson Jakob , Isinger-Ekstrand Anna , van Kuppevelt Toin H. , Johansson Jan , Nilbert Mef , Zaia Joseph , Belting Mattias , Maccarana Marco , Malmström Anders
Published: March 2023

PDF file - 26K
Supplementary Figure 1 from DDX31 Regulates the p53-HDM2 Pathway and rRNA Gene Transcription through Its Interaction with NPM1 in Renal Cell Carcinomas
Authors: Fukawa Tomoya , Ono Masaya , Matsuo Taisuke , Uehara Hisanori , Miki Tsuneharu , Nakamura Yusuke , Kanayama Hiro-omi , Katagiri Toyomasa
Published: March 2023

PDF file - 1.7MB, S1 (A) western blot analysis of DDX31 transfected HEK293 cells (left panel) and endogenous DDX31 in Caki-1 cells (right panel) using purified anti-DDX31 polyclonal antibody. (B)NPM1 protein expression in RCC and HK-2 cells. (C) NPM1 expression in clinical RCC cases by quantitative RT-PCR. (D) immunohistochemical analysis of NPM1 in ccRCC tissue sections. Representative images of ccRCC tissue (776T) and normal kidney tissue (776N). Scale bar shows 50 mum
Supplementary Figure 2 from Pancreatic Cancer-Associated Stellate Cells Promote Differentiation of Myeloid-Derived Suppressor Cells in a STAT3-Dependent Manner
Authors: Mace Thomas A. , Ameen Zeenath , Collins Amy , Wojcik Sylwia , Mair Markus , Young Gregory S. , Fuchs James R. , Eubank Tim D. , Frankel Wendy L. , Bekaii-Saab Tanios , Bloomston Mark , Lesinski Gregory B.
Published: March 2023

PDF file - 1835K, Supplementary Figure S2. PSC supernatants do not signal through STAT1 and STAT5.
Supplementary Figure 1 from RhoJ Regulates Melanoma Chemoresistance by Suppressing Pathways That Sense DNA Damage
Authors: Ho Hsiang , Aruri Jayavani , Kapadia Rubina , Mehr Hootan , White Michael A. , Ganesan Anand K.
Published: March 2023

PDF file - 154K, Negative regulators of melanoma chemoresistance include known melanoma oncogenes
Supplementary Figure Legends from Oncogenic NRAS, Required for Pathogenesis of Embryonic Rhabdomyosarcoma, Relies upon the HMGA2–IGF2BP2 Pathway
Authors: Li Zhizhong , Zhang Yunyu , Ramanujan Krishnan , Ma Yan , Kirsch David G. , Glass David J.
Published: March 2023

PDF file - 110K
Supplementary Figure 1 from eIF4E/4E-BP Ratio Predicts the Efficacy of mTOR Targeted Therapies
Authors: Alain Tommy , Morita Masahiro , Fonseca Bruno D. , Yanagiya Akiko , Siddiqui Nadeem , Bhat Mamatha , Zammit Domenick , Marcus Victoria , Metrakos Peter , Voyer Lucie-Anne , Gandin Valentina , Liu Yi , Topisirovic Ivan , Sonenberg Nahum
Published: March 2023

PDF file - 2.1MB, Figure S1 contains data that show that cells acquire resistance to the anti-proliferative effects of PP242 by downregulating 4E-BP1 and 2
Supplementary Figure Legends 1-5 from Inactivation of the HIF-1α/PDK3 Signaling Axis Drives Melanoma toward Mitochondrial Oxidative Metabolism and Potentiates the Therapeutic Activity of Pro-Oxidants
Authors: Kluza Jérome , Corazao-Rozas Paola , Touil Yasmine , Jendoubi Manel , Maire Cyril , Guerreschi Pierre , Jonneaux Aurélie , Ballot Caroline , Balayssac Stéphane , Valable Samuel , Corroyer-Dulmont Aurélien , Bernaudin Myriam , Malet-Martino Myriam , de Lassalle Elisabeth Martin , Maboudou Patrice , Formstecher Pierre , Polakowska Renata , Mortier Laurent , Marchetti Philippe
Published: March 2023

PDF file - 93K
Supplemental Figure S1 from Dynamic Mast Cell–Stromal Cell Interactions Promote Growth of Pancreatic Cancer
Authors: Ma Ying , Hwang Rosa F. , Logsdon Craig D. , Ullrich Stephen E.
Published: March 2023

Supplemental Figure S1 PDF file 96K, Mast cell-derived IL-13 signaling is Stat6 expression and phosphorylation independent. (A) Total Stat6 and phosphorylated Stat6 protein expression was measured in total cell lysates of PSC by western blot. Lane 1: PSC in control medium, lane 2: PSC in mast cell conditioned medium, and lane 3: PSC in mast cell conditioned medium with blocking IL-13 antibody. (B) Quantification of total Stat6 and phosphorylated Stat6 expression was evaluated by Image J software. �-tubulin was used to normalize the expression density
Supplementary Figure Legends and Methods from Stem Cell Differentiation and Lumen Formation in Colorectal Cancer Cell Lines and Primary Tumors
Authors: Ashley Neil , Yeung Trevor M. , Bodmer Walter F.
Published: March 2023

PDF file, 178K.
Supplementary Figure 4 from Stem Cell Differentiation and Lumen Formation in Colorectal Cancer Cell Lines and Primary Tumors
Authors: Ashley Neil , Yeung Trevor M. , Bodmer Walter F.
Published: March 2023

PDF file, 270K, Stromal alpha Smooth muscle actin labelled myofibroblasts co-stain with Beta-actin.
Supplementary Figures from Mesenchymal CD44 Expression Contributes to the Acquisition of an Activated Fibroblast Phenotype via TWIST Activation in the Tumor Microenvironment
Authors: Spaeth Erika L. , Labaff Adam M. , Toole Bryan P. , Klopp Ann , Andreeff Michael , Marini Frank C.
Published: March 2023

PDF file, 1638K, Transgenic bone marrow transplantation into GFP+ recipient mice resulted in mice with two labeled cell populations (S1); Fewer activated myofibroblast incorporation in tumors engrafted in CD44-/- BMT mice compared to WT BMT (S2); Human and murine MSC phenotype shows no difference between knockdown MSC and naive MSC (S3); Protein and RNA expression of CD44 ligands in tumor cell lines and MSC (S4); Blocking CD44 expression on MSC inhibits migration in vitro and in vivo (S5).
Supplementary Materials and Methods from Adenomatous Polyps Are Driven by Microbe-Instigated Focal Inflammation and Are Controlled by IL-10–Producing T Cells
Authors: Dennis Kristen L. , Wang Yunwei , Blatner Nichole R. , Wang Shuya , Saadalla Abdulrahman , Trudeau Erin , Roers Axel , Weaver Casey T. , Lee James J. , Gilbert Jack A. , Chang Eugene B. , Khazaie Khashayarsha
Published: March 2023

PDF file, 119K.
Supplementary Figure 2 from Adenomatous Polyps Are Driven by Microbe-Instigated Focal Inflammation and Are Controlled by IL-10–Producing T Cells
Authors: Dennis Kristen L. , Wang Yunwei , Blatner Nichole R. , Wang Shuya , Saadalla Abdulrahman , Trudeau Erin , Roers Axel , Weaver Casey T. , Lee James J. , Gilbert Jack A. , Chang Eugene B. , Khazaie Khashayarsha
Published: March 2023

PDF file, 1289K, Phyla composition of colonic polyps is not significantly different between healthy and polyp-bearing mice.
Supplementary Table S1 from Melanoma-Educated CD14+ Cells Acquire a Myeloid-Derived Suppressor Cell Phenotype through COX-2–Dependent Mechanisms
Authors: Mao Yumeng , Poschke Isabel , Wennerberg Erik , Pico de Coaña Yago , Egyhazi Brage Suzanne , Schultz Inkeri , Hansson Johan , Masucci Giuseppe , Lundqvist Andreas , Kiessling Rolf
Published: March 2023

Supplementary Table S1 - PDF file 80K, Supplemental table containing additional authentication data
Supplementary Figures S4 from Melanoma-Educated CD14+ Cells Acquire a Myeloid-Derived Suppressor Cell Phenotype through COX-2–Dependent Mechanisms
Authors: Mao Yumeng , Poschke Isabel , Wennerberg Erik , Pico de Coaña Yago , Egyhazi Brage Suzanne , Schultz Inkeri , Hansson Johan , Masucci Giuseppe , Lundqvist Andreas , Kiessling Rolf
Published: March 2023

Supplementary Figure S4 - PDF file 136K, PGE2 receptor EP3 is responsible for the activation of STAT-3 signaling on MDSC-like cells
Supplementary Figure 3 from GM-CSF Promotes the Immunosuppressive Activity of Glioma-Infiltrating Myeloid Cells through Interleukin-4 Receptor-α
Authors: Kohanbash Gary , McKaveney Kayla , Sakaki Masashi , Ueda Ryo , Mintz Arlan H. , Amankulor Nduka , Fujita Mitsugu , Ohlfest John R. , Okada Hideho
Published: March 2023

PDF file, 65K, mAb-mediated depletion of T-cells.
Supplementry Figure from PanIN-Specific Regulation of Wnt Signaling by HIF2α during Early Pancreatic Tumorigenesis
Authors: Criscimanna Angela , Duan Li-Juan , Rhodes Julie A. , Fendrich Volker , Wickline Emily , Hartman Douglas J. , Monga Satdarshan P.S. , Lotze Michael T. , Gittes George K. , Fong Guo-Hua , Esni Farzad
Published: March 2023

Supplementry Figure 4 - PDF file 812K, HIF2� promotes B-catenin and Smad4 expression
Supplemental Table S1 from Melanoma-Educated CD14+ Cells Acquire a Myeloid-Derived Suppressor Cell Phenotype through COX-2–Dependent Mechanisms
Authors: Mao Yumeng , Poschke Isabel , Wennerberg Erik , Pico de Coaña Yago , Egyhazi Brage Suzanne , Schultz Inkeri , Hansson Johan , Masucci Giuseppe , Lundqvist Andreas , Kiessling Rolf
Published: March 2023

Supplemental table containing additional authentication data.
Supplemental Figure S3 from Melanoma-Educated CD14+ Cells Acquire a Myeloid-Derived Suppressor Cell Phenotype through COX-2–Dependent Mechanisms
Authors: Mao Yumeng , Poschke Isabel , Wennerberg Erik , Pico de Coaña Yago , Egyhazi Brage Suzanne , Schultz Inkeri , Hansson Johan , Masucci Giuseppe , Lundqvist Andreas , Kiessling Rolf
Published: March 2023

Melanoma cells induce MDSC-like cells through COX-2/PGE2 production.
Supplemental Figure S2 from Melanoma-Educated CD14+ Cells Acquire a Myeloid-Derived Suppressor Cell Phenotype through COX-2–Dependent Mechanisms
Authors: Mao Yumeng , Poschke Isabel , Wennerberg Erik , Pico de Coaña Yago , Egyhazi Brage Suzanne , Schultz Inkeri , Hansson Johan , Masucci Giuseppe , Lundqvist Andreas , Kiessling Rolf
Published: March 2023

Tumor-educated MDSC-like cells are potent suppressors of autologous T cells.
Supplementary Figure 5 from PanIN-Specific Regulation of Wnt Signaling by HIF2α during Early Pancreatic Tumorigenesis
Authors: Criscimanna Angela , Duan Li-Juan , Rhodes Julie A. , Fendrich Volker , Wickline Emily , Hartman Douglas J. , Monga Satdarshan P.S. , Lotze Michael T. , Gittes George K. , Fong Guo-Hua , Esni Farzad
Published: March 2023

Supplementary Figure 5 - PDF file 5613 K, Loss of Smad4 in PKH2 mPanINs
Supplementary Figure Legend from Cancer Stem–like Cell Marker CD44 Promotes Bone Metastases by Enhancing Tumorigenicity, Cell Motility, and Hyaluronan Production
Authors: Hiraga Toru , Ito Susumu , Nakamura Hiroaki
Published: March 2023

Supplementary Figure Legends - PDF file 61K, The file of Supplementary figure legends
Supplementary Figure 3 from Specific Recruitment of γδ Regulatory T Cells in Human Breast Cancer
Authors: Ye Jian , Ma Chunling , Wang Fang , Hsueh Eddy C. , Toth Karoly , Huang Yi , Mo Wei , Liu Shuai , Han Bing , Varvares Mark A. , Hoft Daniel F. , Peng Guangyong
Published: March 2023

PDF file, 4006K, Neutralization of IP-10 does not affect the trafficking and distribution of tumor-specific effector CD8+ TIL586 cells into tumor sites in tumor-bearing mice.
Supplementary Table 1 from Proteomic and Lipidomic Signatures of Lipid Metabolism in NASH-Associated Hepatocellular Carcinoma
Authors: Muir Kyle , Hazim Antonious , He Ying , Peyressatre Marion , Kim Do-Young , Song Xiaoling , Beretta Laura
Published: March 2023

Supplementary Table 1�- PDF file 68K, Characteristics of Patients Enrolled in the Study
Supplementary Table 1 from Therapeutic Effects of Deleting Cancer-Associated Fibroblasts in Cholangiocarcinoma
Authors: Mertens Joachim C. , Fingas Christian D. , Christensen John D. , Smoot Rory L. , Bronk Steven F. , Werneburg Nathan W. , Gustafson Michael P. , Dietz Allan B. , Roberts Lewis R. , Sirica Alphonse E. , Gores Gregory J.
Published: March 2023

PDF file - 31K, List of primers
Supplementary Methods from Therapeutic Effects of Deleting Cancer-Associated Fibroblasts in Cholangiocarcinoma
Authors: Mertens Joachim C. , Fingas Christian D. , Christensen John D. , Smoot Rory L. , Bronk Steven F. , Werneburg Nathan W. , Gustafson Michael P. , Dietz Allan B. , Roberts Lewis R. , Sirica Alphonse E. , Gores Gregory J.
Published: March 2023

PDF file - 101K
Supplementary Figure 2 from Therapeutic Effects of Deleting Cancer-Associated Fibroblasts in Cholangiocarcinoma
Authors: Mertens Joachim C. , Fingas Christian D. , Christensen John D. , Smoot Rory L. , Bronk Steven F. , Werneburg Nathan W. , Gustafson Michael P. , Dietz Allan B. , Roberts Lewis R. , Sirica Alphonse E. , Gores Gregory J.
Published: March 2023

PDF file - 253K, Bcl-2 family protein expression by human cholangiocarcinoma cell lines and Bax activation by navitoclax
Supplementary Figure 3 from CDK1 Phosphorylation of YAP Promotes Mitotic Defects and Cell Motility and Is Essential for Neoplastic Transformation
Authors: Yang Shuping , Zhang Lin , Liu Miao , Chong Rong , Ding Shi-Jian , Chen Yuanhong , Dong Jixin
Published: March 2023

PDF file 967K, Specificity of Phospho-YAP Antibodies.
Supplementary Figure Legends and Materials and Methods from Cyclin D1-Dependent Induction of Luminal Inflammatory Breast Tumors by Activated Notch3
Authors: Ling Hua , Sylvestre Jean-René , Jolicoeur Paul
Published: March 2023

PDF file, 128K.
Supplementary Table 1 from Double Minute Chromosomes in Glioblastoma Multiforme Are Revealed by Precise Reconstruction of Oncogenic Amplicons
Authors: Sanborn J. Zachary , Salama Sofie R. , Grifford Mia , Brennan Cameron W. , Mikkelsen Tom , Jhanwar Suresh , Katzman Sol , Chin Lynda , Haussler David
Published: March 2023

PDF file, 1782K, BamBam output of peaks and rearrangements (TCGA-GBM Exome analysis).
Supplementary Figure 3 from Tumor Suppressor Function of the Plasma Glutathione Peroxidase Gpx3 in Colitis-Associated Carcinoma
Authors: Barrett Caitlyn W. , Ning Wei , Chen Xi , Smith Jesse Joshua , Washington Mary K. , Hill Kristina E. , Coburn Lori A. , Peek Richard M. , Chaturvedi Rupesh , Wilson Keith T. , Burk Raymond F. , Williams Christopher S.
Published: March 2023

PDF file - 2275K, Gpx3 expression is downregulated in human colon cancer samples. A) GPX3 expression is significantly downregulated in adenomas and colorectal cancer patients compared with normal adjacent colon tissues. **P<0.01 for each stage relative to normal. B) GPX3 expression in matched human normal and tumor samples. Error bars represent standard deviation of samples performed in duplicate. C) Western blot of GPX3 protein expression in matched human normal and tumor samples. Quantification is presented as fold change intensity controlled for -actin.
Supplementary Movie 3 from Autophagy Plays a Critical Role in the Degradation of Active RHOA, the Control of Cell Cytokinesis, and Genomic Stability
Authors: Belaid Amine , Cerezo Michaël , Chargui Abderrahman , Corcelle–Termeau Elisabeth , Pedeutour Florence , Giuliano Sandy , Ilie Marius , Rubera Isabelle , Tauc Michel , Barale Sophie , Bertolotto Corinne , Brest Patrick , Vouret-Craviari Valérie , Klionsky Daniel J. , Carle Georges F. , Hofman Paul , Mograbi Baharia
Published: March 2023

AVI file - 2696K, Video 3 (related to Fig. 2E) is a time-lapse recording of four pairs of a3-/- cells that entered mitosis synchronously, likely bridged sister cells. Pairs of cells that entered mitosis synchronously are outlined in color in the first frame, and then marked with dots in the next frame to help visualize their progression in mitosis.
Supplementary Table 3 from Quantitative In Vivo Characterization of Intracellular and Extracellular pH Profiles in Heterogeneous Tumors: A Novel Method Enabling Multiparametric pH Analysis
Authors: Lutz Norbert W. , Le Fur Yann , Chiche Johanna , Pouysségur Jacques , Cozzone Patrick J.
Published: March 2023

PDF file - 77K, Statistical parameters characterizing bimodal computer-simulated pH distributions.
Supplementary Figure 2 from Avirulent Toxoplasma gondii Generates Therapeutic Antitumor Immunity by Reversing Immunosuppression in the Ovarian Cancer Microenvironment
Authors: Baird Jason R. , Fox Barbara A. , Sanders Kiah L. , Lizotte Patrick H. , Cubillos-Ruiz Juan R. , Scarlett Uciane K. , Rutkowski Melanie R. , Conejo-Garcia Jose R. , Fiering Steven , Bzik David J.
Published: March 2023

PDF file - 140K, Supplementary Figure S2. Ex vivo application of cps to terminal ascites increases expression of CD80 and CD86 on CD11c+ cells and increases expression of CD69 on T cell.
Supplementary Table 2 from Oncogenic Herpesvirus HHV-8 Promotes Androgen-Independent Prostate Cancer Growth
Authors: Mygatt Justin G. , Singhal Adit , Sukumar Gauthaman , Dalgard Clifton L. , Kaleeba Johnan A.R.
Published: March 2023

PDF file - 204K, Microarray analysis of EMT-relevant genes in HHV-8-infected LNCaP-V219 cells cultured in androgen depleted (CSFBS) conditions.
Supplementary Figure 4 from Membrane versus Soluble Isoforms of TNF-α Exert Opposing Effects on Tumor Growth and Survival of Tumor-Associated Myeloid Cells
Authors: Ardestani Shidrokh , Li Bin , Deskins Desirae L. , Wu Huiyun , Massion Pierre P. , Young Pampee P.
Published: March 2023

PDF file - 124K, Tumor derived mTNFα does not affect T-cell and neutrophil content in tumor.
Supplementary Figure 3 from Membrane versus Soluble Isoforms of TNF-α Exert Opposing Effects on Tumor Growth and Survival of Tumor-Associated Myeloid Cells
Authors: Ardestani Shidrokh , Li Bin , Deskins Desirae L. , Wu Huiyun , Massion Pierre P. , Young Pampee P.
Published: March 2023

PDF file - 188K, Expression of mTNFα does not affect proliferation and vascularity in B16F10 melanoma tumors.