bluuebunny/crossref_metadata_2025 huggingface dataset:
Increase in water column denitrification during the last deglaciation: the influence of oxygen demand in the eastern equatorial Pacific
Authors: Martinez P. , Robinson R. S.
Published: April 2010

Abstract. Here we present organic export production and nitrogen isotope results spanning the last 30 000 years from a core recovered off Costa Rica (Ocean Drilling Program (ODP) Site 1242) on the leading edge of the oxygen minimum zone of the Eastern Tropical North Pacific. Marine export production reveals glacial-interglacial variations with low organic matter (total organic carbon and total nitrogen) contents during warm intervals, twice more during cold episodes and double peaked maximum during the deglaciation, between ~15.5–18.5 and 11–13 ka B.P. When this new export production record is compared with four nearby cores from within the Eastern Pacific along the Equatorial divergence, good agreement between all the cores is observed. The major feature is a maximum of export during the early deglaciation. As for export production, water-column denitrification, represented by sedimentary δ15N records, along the Eastern tropical North and South Pacific between 15° N and 36° S is also coherent over the last deglaciation. Each of the nitrogen isotope profiles indicate that denitrification increased abruptly at 19 ka B.P to a maximum during the early deglaciation, confirming a typical Antarctic timing. It is proposed that the increase in export production and then in subsurface oxygen demand lead to an intensification of water-column denitrification within the oxygen minimum zones in the easternmost Pacific at the time of the last deglaciation. The triggering mechanism would have been primarily linked to an increase in preformed nutrients contents feeding the Equatorial Undercurrent driven by the resumption of overturning in the Southern Ocean and the return of nutrients from the deep ocean to the sea-surface. An increase in equatorial wind-driven upwelling of sub-surface nutrient-rich waters could have played the role of an amplifier.
Iron biogeochemistry across marine systems – progress from the past decade
Authors: Breitbarth E. , Achterberg E. P. , Ardelan M. V. , Baker A. R. , Bucciarelli E. , Chever F. , Croot P. L. , Duggen S. , Gledhill M. , Hassellöv M. , Hassler C. , Hoffmann L. J. , Hunter K. A. , Hutchins D. A. , Ingri J. , Jickells T. , Lohan M. C. , Nielsdóttir M. C. , Sarthou G. , Schoemann V. , Trapp J. M. , Turner D. R. , Ye Y.
Published: April 2010

Abstract. Based on an international workshop (Gothenburg, 14–16 May 2008), this review article aims to combine interdisciplinary knowledge from coastal and open ocean research on iron biogeochemistry. The major scientific findings of the past decade are structured into sections on natural and artificial iron fertilization, iron inputs into coastal and estuarine systems, colloidal iron and organic matter, and biological processes. Potential effects of global climate change, particularly ocean acidification, on iron biogeochemistry are discussed. The findings are synthesized into recommendations for future research areas.
Effects of grazing on leaf traits and ecosystem functioning in Inner Mongolia grasslands: scaling from species to community
Authors: Zheng S. X. , Ren H. Y. , Lan Z. C. , Li W. H. , Wang K. B. , Bai Y. F.
Published: April 2010

Abstract. Understanding the mechanistic links between environmental drivers, human disturbance, plant functional traits, and ecosystem properties is a fundamental aspect of biodiversity-ecosystem functioning research. Recent studies have focused mostly on leaf-level traits or community-level weighted traits to predict species responses to grazing and the consequent change in ecosystem functioning. However, studies of leaf-level traits or community-level weighted traits seldom identify the mechanisms linking grazing impact on leaf traits to ecosystem functioning. Here, using a multi-organization-level approach, we examined the effects of grazing on leaf traits (i.e., leaf area, leaf dry mass and specific leaf area) and ecosystem functioning across six communities of three vegetation types along a soil moisture gradient in the Xilin River Basin of Inner Mongolia grassland, China. Our results showed that the effects of grazing on leaf traits differed substantially when scaling up from leaf-level to species, functional group (i.e., life forms and water ecotype types), and community levels; and they also varied with vegetation type or site conditions. The effects of grazing on leaf traits diminished progressively along the hierarchy of organizational levels in the meadow, whereas the impacts were predominantly negative and the magnitude of the effects increased considerably at higher organizational levels in the typical steppe. Soil water and nutrient availability, functional trade-offs between leaf size and number of leaves per individual, and differentiation in avoidance and tolerance strategies among coexisting species are likely to be responsible for the observed responses of leaf traits to grazing at different levels of organization and among vegetation types. Our findings also demonstrate that, at both the functional group and community levels, standing aboveground biomass increased with leaf area and specific leaf area. Compared with the large changes in leaf traits and standing aboveground biomass, the soil properties were relatively unaffected by grazing. Our study indicates that a multi-organization-level approach provides more robust and comprehensive predictions of the effects of grazing on leaf traits and ecosystem functioning.
Effects of environmental factors and soil properties on topographic variations of soil respiration
Authors: Tamai K.
Published: April 2010

Abstract. Soil respiration rates were measured along different parts of a slope in (a) an evergreen forest with common brown forest soil and (b) a deciduous forest with immature soil. The effects of soil temperature, soil moisture and soil properties were estimated individually, and the magnitudes of these effects in the deciduous and evergreen forests were compared. In the evergreen forest with common brown forest soil, soil properties had the greatest effect on soil respiration rates, followed by soil moisture and soil temperature. These results may be explained by the fact that different soil properties matured within different environments. It can be argued that the low soil respiration rates in the low parts of the slope in the evergreen forest resulted from soil properties and not from wet soil conditions. In the deciduous forest, soil respiration rates were more strongly affected by soil moisture and soil temperature than by soil properties. These effects were likely due to the immaturity of the forest soil.
A comparison of the variability of biological nutrients against depth and potential density
Authors: While J. , Haines K.
Published: April 2010

Abstract. The main biogeochemical nutrient distributions, along with ambient ocean temperature and the light field, control ocean biological productivity. Observations of nutrients are much sparser than physical observations of temperature and salinity, yet it is critical to validate biogeochemical models against these sparse observations if we are to successfully model biological variability and trends. Here we use data from the Bermuda Atlantic Time-series Study and the World Ocean Database 2005 to demonstrate quantitatively that over the entire globe a significant fraction of the temporal variability of phosphate, silicate and nitrate within the oceans is correlated with water density. The temporal variability of these nutrients as a function of depth is almost always greater than as a function of potential density, with he largest reductions in variability found within the main pycnocline. The greater nutrient variability as a function of depth occurs when dynamical processes vertically displace nutrient and density fields together on shorter timescales than biological adjustments. These results show that dynamical processes can have a significant impact on the instantaneous nutrient distributions. These processes must therefore be considered when modeling biogeochemical systems, when comparing such models with observations, or when assimilating data into such models.
Effect of carbonate ion concentration and irradiance on calcification in planktonic foraminifera
Authors: Lombard F. , da Rocha R. E. , Bijma J. , Gattuso J.-P.
Published: April 2010

Abstract. The effect of carbonate ion concentration ([CO32−]) on calcification rates estimated from shell size and weight was investigated in the planktonic foraminifera Orbulina universa and Globigerinoides sacculifer. Experiments on G. sacculifer were conducted under two irradiance levels (35 and 335 μmol photons m−2 s−1). Calcification was ca. 30% lower under low light than under high light, irrespective of the [CO32−]. Both O. universa and G. sacculifer exhibited reduced final shell weight and calcification rate under low [CO32−]. For the [CO32−] expected at the end of the century, the calcification rates of these two species are projected to be 6 to 13% lower than the present conditions, while the final shell weights are reduced by 20 to 27% for O. universa and by 4 to 6% for G. sacculifer. These results indicate that ocean acidification would impact on calcite production by foraminifera and may decrease the calcite flux contribution from these organisms.
Belowground carbon pools and dynamics in China's warm temperate and sub-tropical deciduous forests
Authors: Xiao C. W. , Janssens I. A. , Sang W. G. , Wang R. Z. , Xie Z. Q. , Pei Z. Q. , Yi Y.
Published: April 2010

Abstract. We report the first estimates of pools and dynamics of microbes, roots, plant litter and soil organic carbon (SOC) in three dominant types of China's vast deciduous forest area: Betula platyphylla, Quercus liaotungensis, and Quercus aliena var. acuteserrata. Organic matter degradation rates overshadowed litter inputs as the main determinant of the soil carbon stocks. Across the three forests, rates of litter decomposition were also indicative for turnover rates of SOC. Litter and SOC decay was faster in the sub-tropical than in the warm-temperate forests. Among the latter, SOC turnover was highest in the forest producing the higher-quality litter. Microbial biomass was, as expected, correlated with SOC content. Microbial activity, in contrast, was highest at the sub-tropical forest, despite the lower SOC availability, lower fraction of labile SOC, and lower soil microbial biomass. These results may contribute to increased understanding of controls over belowground carbon cycling in deciduous forests.
Response of the temperate coral Cladocora caespitosa to mid- and long-term exposure to pCO2 and temperature levels projected for the year 2100 AD
Authors: Rodolfo-Metalpa R. , Martin S. , Ferrier-Pagès C. , Gattuso J.-P.
Published: April 2010

Abstract. Atmospheric CO2 partial pressure (pCO2) is expected to increase to 700 μatm or more by the end of the present century. Anthropogenic CO2 is absorbed by the oceans, leading to decreases in pH and the CaCO3 saturation state (Ω) of the seawater. Elevated pCO2 was shown to drastically decrease calcification rates in tropical zooxanthellate corals. Here we show, using the Mediterranean zooxanthellate coral Cladocora caespitosa, that an increase in pCO2, in the range predicted for 2100, does not reduce its calcification rate. Therefore, the conventional belief that calcification rates will be affected by ocean acidification may not be widespread in temperate corals. Seasonal change in temperature is the predominant factor controlling photosynthesis, respiration, calcification and symbiont density. An increase in pCO2, alone or in combination with elevated temperature, had no significant effect on photosynthesis, photosynthetic efficiency and calcification. The lack of sensitivity C. caespitosa to elevated pCO2 might be due to its slow growth rates, which seem to be more dependent on temperature than on the saturation state of calcium carbonate in the range projected for the end of the century.
Impact of changes in river fluxes of silica on the global marine silicon cycle: a model comparison
Authors: Bernard C. Y. , Laruelle G. G. , Slomp C. P. , Heinze C.
Published: April 2010

Abstract. The availability of dissolved silica (Si) in the ocean provides a major control on the growth of siliceous phytoplankton. Diatoms in particular account for a large proportion of oceanic primary production. The original source of the silica is rock weathering, followed by transport of dissolved and biogenic silica to the coastal zone. This model study aims at assessing the sensitivity of the global marine silicon cycle to variations in the river input of silica on timescales ranging from several centuries to millennia. We compare the performance of a box model for the marine silicon cycle to that of a global biogeochemical ocean general circulation model (HAMOCC2 and 5). Results indicate that the average global ocean response to changes in river input of silica is comparable in the models on time scales up to 150 kyrs. While the trends in export production and opal burial are the same, the box model shows a delayed response to the imposed perturbations compared to the general circulation model. Results of both models confirm the important role of the continental margins as a sink for silica at the global scale. Our work also demonstrates that the effects of changes in riverine dissolved silica on ocean biogeochemistry depend on the availability of the other nutrients such as nitrogen, phosphorus and iron. The model results suggest that the effects of reduced silica inputs due to river damming are particularly pronounced in the Gulf of Bengal, Gulf of Mexico and the Amazon plume where they negatively affect opal production. While general circulation models are indispensable when assessing the spatial variation in opal export production and biogenic Si burial in the ocean, this study demonstrates that box models provide a good alternative when studying the average global ocean response to perturbations of the oceanic silica cycle (especially on longer time scales).
The annual ammonia budget of fertilised cut grassland – Part 1: Micrometeorological flux measurements and emissions after slurry application
Authors: Spirig C. , Flechard C. R. , Ammann C. , Neftel A.
Published: April 2010

Abstract. Two commercial ammonia (NH3) analysers were customised to allow continuous measurements of vertical concentration gradients. The gradients were used to derive ammonia exchange fluxes above a managed grassland site at Oensingen (Switzerland) by application of the aerodynamic gradient method. The measurements from July 2006 to October 2007 covered five complete growth-cut cycles and included six applications of liquid cattle slurry. The average accuracy of the flux measurements during unstable and near-neutral conditions was 20% and the detection limit was 10 ng NH3 m−2 s−1. Hence the flux measurements are considered sufficiently accurate for studying typical NH3 deposition rates over growing vegetation. Quantifying the overall emissions after slurry applications required the application of elaborate interpolations because of difficulties capturing the initial emissions during broadspreading of liquid manure. The emissions were also calculated with a mass balance method yielding similar fluxes. NH3 losses after slurry application expressed as percentage of emitted nitrogen versus applied total ammoniacal nitrogen (TAN) varied between 4 and 19%, which is roughly a factor of three lower than the values for broadspreading of liquid manure in emission inventories. The comparatively low emission factors appear to be a consequence of the low dry matter content of the applied slurry and soil properties favouring ammonium adsorption.
Increased ocean carbon export in the Sargasso Sea linked to climate variability is countered by its enhanced mesopelagic attenuation
Authors: Lomas M. W. , Steinberg D. K. , Dickey T. , Carlson C. A. , Nelson N. B. , Condon R. H. , Bates N. R.
Published: April 2010

Abstract. Photosynthetic CO2 uptake by oceanic phytoplankton and subsequent export of particulate organic carbon (POC) to the ocean interior comprises a globally significant biological carbon pump, controlled in part by the composition of the planktonic community. The strength and efficiency of this pump depends upon the balance of particle production in the euphotic zone and remineralization of those particles in the mesopelagic (defined here as depths between 150 and 300 m), but how these processes respond to climate-driven changes in the physical environment is not completely understood. In the Sargasso Sea, from ~1996–2007, we have observed a decade-long >50% increase in euphotic zone integrated autotrophic biomass (estimated from chlorophyll TChl-α), prokaryotic phytoplankton, primary production and shallow (150 m) POC export coinciding with a shift in the mean phase of the winter North Atlantic Oscillation (NAO) from consistently positive to neutral but variable. During this same period mesopelagic POC flux attenuation has doubled such that carbon sequestration below 300 m, the maximum winter/spring ventilation depth, has not changed. The increased mesopelagic POC attenuation appears mediated by changes in plankton community composition and metabolic activity in both the euphotic and mesopelagic zones. These changes are counter to extant hypotheses regarding inter-relationships between phytoplankton community composition, productivity and carbon export, and have significant impacts on how the Sargasso Sea ecosystem, at least, is modeled. Moreover, these time-series observations suggest that processes in the euphotic zone and mesopelagic are tightly coupled and should be considered together in future research.
Detection of anthropogenic climate change in satellite records of ocean chlorophyll and productivity
Authors: Henson S. A. , Sarmiento J. L. , Dunne J. P. , Bopp L. , Lima I. , Doney S. C. , John J. , Beaulieu C.
Published: April 2010

Abstract. Global climate change is predicted to alter the ocean's biological productivity. But how will we recognise the impacts of climate change on ocean productivity? The most comprehensive information available on its global distribution comes from satellite ocean colour data. Now that over ten years of satellite-derived chlorophyll and productivity data have accumulated, can we begin to detect and attribute climate change-driven trends in productivity? Here we compare recent trends in satellite ocean colour data to longer-term time series from three biogeochemical models (GFDL, IPSL and NCAR). We find that detection of climate change-driven trends in the satellite data is confounded by the relatively short time series and large interannual and decadal variability in productivity. Thus, recent observed changes in chlorophyll, primary production and the size of the oligotrophic gyres cannot be unequivocally attributed to the impact of global climate change. Instead, our analyses suggest that a time series of ~40 years length is needed to distinguish a global warming trend from natural variability. In some regions, notably equatorial regions, detection times are predicted to be shorter (~20–30 years). Analysis of modelled chlorophyll and primary production from 2001–2100 suggests that, on average, the climate change-driven trend will not be unambiguously separable from decadal variability until ~2055. Because the magnitude of natural variability in chlorophyll and primary production is larger than, or similar to, the global warming trend, a consistent, decades-long data record must be established if the impact of climate change on ocean productivity is to be definitively detected.
Information content of incubation experiments for inverse estimation of pools in the Rothamsted carbon model: a Bayesian perspective
Authors: Scharnagl B. , Vrugt J. A. , Vereecken H. , Herbst M.
Published: April 2010

Abstract. A major drawback of current soil organic carbon (SOC) models is that their conceptually defined pools do not necessarily correspond to measurable SOC fractions in real practice. This not only impairs our ability to rigorously evaluate SOC models but also makes it difficult to derive accurate initial states of the individual carbon pools. In this study, we tested the feasibility of inverse modelling for estimating pools in the Rothamsted carbon model (ROTHC) using mineralization rates observed during incubation experiments. This inverse approach may provide an alternative to existing SOC fractionation methods. To illustrate our approach, we used a time series of synthetically generated mineralization rates using the ROTHC model. We adopted a Bayesian approach using the recently developed DiffeRential Evolution Adaptive Metropolis (DREAM) algorithm to infer probability density functions of the various carbon pools at the start of incubation. The Kullback-Leibler divergence was used to quantify the information content of the mineralization rate data. Our results indicate that measured mineralization rates generally provided sufficient information to reliably estimate all carbon pools in the ROTHC model. The incubation time necessary to appropriately constrain all pools was about 900 days. The use of prior information on microbial biomass carbon significantly reduced the uncertainty of the initial carbon pools, decreasing the required incubation time to about 600 days. Simultaneous estimation of initial carbon pools and decomposition rate constants significantly increased the uncertainty of the carbon pools. This effect was most pronounced for the intermediate and slow pools. Altogether, our results demonstrate that it is particularly difficult to derive reasonable estimates of the humified organic matter pool and the inert organic matter pool from inverse modelling of mineralization rates observed during incubation experiments.
Ventilation of subterranean CO2 and Eddy covariance incongruities over carbonate ecosystems
Authors: Were A. , Serrano-Ortiz P. , Moreno de Jong C. , Villagarcía L. , Domingo F. , Kowalski A. S.
Published: April 2010

Abstract. Measurements of CO2 fluxes with Eddy Covariance (EC) systems are ongoing over different ecosystems around the world, through different measuring networks, in order to assess the carbon balance of these ecosystems. In carbonate ecosystems, characterized by the presence of subterranean pores and cavities, ventilation of the CO2 accumulated in these cavities and pores can act as an extra source of CO2 exchange between the ecosystem and the atmosphere. In this work we analyse the effect of the subterranean heterogeneity of a carbonate ecosystem on measurements of CO2 fluxes by comparing measurements from two EC systems with distinct footprints. Results showed that both EC systems agreed for measurements of evapotranspiration and of CO2 in periods when respiratory and photosynthetic processes were dominant (biological periods), with a regression slope of 0.99 and 0.97, respectively. However, in periods when the main source of CO2 comes from the ventilation of subterranean pores and cavities (abiotic periods) agreement is not good, with a regression slope of 0.6. Ground-penetrating radar measurements of the sub-surface confirmed the existence of high sub-surface heterogeneity that, combined with different footprints, lead to differences in the measurements of the two EC systems. These results show that measurements of CO2 fluxes with Eddy covariance systems over carbonate ecosystems must be taken carefully, as they may not be representative of the ecosystem under consideration.
Effects of seagulls on ecosystem respiration, soil nitrogen and vegetation cover on a pristine volcanic island, Surtsey, Iceland
Authors: Sigurdsson B. D. , Magnusson B.
Published: April 2010

Abstract. When Surtsey rose from the North Atlantic Ocean south of Iceland in 1963, it became a unique natural laboratory on how organisms colonize volcanic islands and form ecosystems with contrasting structures and functions. In July, 2004, ecosystem respiration rate (Re), soil properties and surface cover of vascular plants were measured in 21 permanent research plots distributed among the juvenile communities of the island. The plots were divided into two main groups, inside and outside a seagull (Larus spp.) colony established on the island. Vegetation cover of the plots was strongly related to the density of gull nests. Occurrence of nests and increased vegetation cover also coincided with significant increases in Re, soil carbon, nitrogen and C:N ratio, and with significant reductions in soil pH and soil temperatures. Temperature sensitivity (Q10 value) of Re was determined as 5.3. When compared at constant temperature the Re was found to be 59 times higher within the seagull colony, similar to the highest fluxes measured in drained wetlands or agricultural fields in Iceland. The amount of soil nitrogen, mainly brought onto the island by the seagulls, was the critical factor that most influenced ecosystem fluxes and vegetation development on Surtsey. The present study shows how ecosystem activity can be enhanced by colonization of animals that transfer resources from a nearby ecosystem.
A simple ecohydrological model captures essentials of seasonal leaf dynamics in semi-arid tropical grasslands
Authors: Choler P. , Sea W. , Briggs P. , Raupach M. , Leuning R.
Published: April 2010

Abstract. Modelling leaf phenology in water-controlled ecosystems remains a difficult task because of high spatial and temporal variability in the interaction of plant growth and soil moisture. Here, we move beyond widely used linear models to examine the performance of low-dimensional, nonlinear ecohydrological models that couple the dynamics of plant cover and soil moisture. The study area encompasses 400 000 km2 of semi-arid perennial tropical grasslands, dominated by C4 grasses, in the Northern Territory and Queensland (Australia). We prepared 8-year time series (2001–2008) of climatic variables and estimates of fractional vegetation cover derived from MODIS Normalized Difference Vegetation Index (NDVI) for 400 randomly chosen sites, of which 25% were used for model calibration and 75% for model validation. We found that the mean absolute error of linear and nonlinear models did not markedly differ. However, nonlinear models presented key advantages: (1) they exhibited far less systematic error than their linear counterparts; (2) their error magnitude was consistent throughout a precipitation gradient while the performance of linear models deteriorated at the driest sites, and (3) they better captured the sharp transitions in leaf cover that are observed under high seasonality of precipitation. Our results showed that low-dimensional models including feedbacks between soil water balance and plant growth adequately predict leaf dynamics in semi-arid perennial grasslands. Because these models attempt to capture fundamental ecohydrological processes, they should be the favoured approach for prognostic models of phenology.
The effect of a reciprocal peat transplant between two contrasting Central European sites on C cycling and C isotope ratios
Authors: Novak M. , Zemanova L. , Buzek F. , Jackova I. , Adamova M. , Komarek A. , Vile M. A. , Kelman Wieder R. , Stepanova M.
Published: April 2010

Abstract. An 18-month reciprocal peat transplant experiment was conducted between two peatlands in the Czech Republic. Both sites were 100% Sphagnum-covered, with no vascular plants, and no hummocks and hollows. Atmospheric depositions of sulfur were up to 10 times higher at the northern site Velke jerabi jezero (VJJ), compared to the southern site Cervene blato (CB). Forty-cm deep peat cores, 10-cm in diameter, were used as transplants and controls in five replicates. Our objective was to evaluate whether CO2 and CH4 emissions from Sphagnum peat bogs are governed mainly by organic matter quality in the substrate, or by environmental conditions. Emission rates and δ13C values of CO2 and CH4 were measured in the laboratory at time t=18 months. All measured parameters converged to those of the host site, indicating that, at least in the short-term perspective, environmental conditions were a more important control of greenhouse gas emissions than organic carbon quality in the substrate. Since sulfate reducers outcompete methanogens, we hypothesized that the S-polluted site VJJ should have lower methane emissions than CB. In fact, the opposite was true, with significantly (p<0.01) higher methane emissions from VJJ. Additionally, as a first step in an effort to link C isotope composition of emitted gases and residual peat substrate, we determined whether multiple vertical δ13C profiles in peat agree. A high degree of within-site homogeneity in δ13C was found. When a specific vertical δ13C trend was seen in one peat core, the same trend was also seen in all the remaining peat cores from the wetland. The δ13C value increased downcore at both CB and VJJ. At VJJ, however, 20 cm below surface, a reversal to lower δ13C downcore was seen. Based on 210Pb dating, peat at 20-cm depth at VJJ was only 15 years old. Increasing δ13C values in VJJ peat accumulated between 1880–1990 could not be caused by assimilation of atmospheric CO2 gradually enriched in the light isotope 12C due to fossil fuel burning. Rather they were a result of a combination of isotope fractionations accompanying assimilation and mineralization of Sphagnum C. These isotope fractionations may record information about past changes in C storage in wetlands.
Modeling dissolved oxygen dynamics and hypoxia
Authors: Peña M. A. , Katsev S. , Oguz T. , Gilbert D.
Published: April 2010

Abstract. Hypoxia conditions are increasing throughout the world, influencing biogeochemical cycles of elements and marine life. Hypoxia results from complex interactions between physical and biogeochemical processes, which can not be understood by observations alone. Models are invaluable tools at studying system dynamics, generalizing discrete observations and predicting future states. They are also useful as management tools for evaluating site-specific responses to management scenarios. Here we review oxygen dynamics models that have significantly contributed to a better understanding of the effects of natural processes and human perturbations on the development of hypoxia, factors controlling the extent and temporal variability of coastal hypoxia, and the effects of oxygen depletion on biogeochemical cycles. Because hypoxia occurs in a variety of environments and can be persistent, periodic or episodic, models differ significantly in their complexity and temporal and spatial resolution. We discuss the progress in developing hypoxia models for benthic and pelagic systems that range from simple box models to three dimensional circulation models. Applications of these models in five major hypoxia regions are presented. In the last decades, substantial progress has been made towards the parameterization of biogeochemical processes in both hypoxic water columns and sediments. In coastal regions, semi-empirical models have been used more frequently than mechanistic models to study nutrient enrichment and hypoxia relationships. Recent advances in three-dimensional coupled physical-ecological-biogeochemical models have allowed a better representation of physical-biological interactions in these systems. We discuss the remaining gaps in process descriptions and suggest directions for improvement. Better process representations in models will help us answer several important questions, such as those about the causes of the observed worldwide increase in hypoxic conditions, and future changes in the intensity and spread of coastal hypoxia. At the same time, quantitative model intercomparison studies suggest that the predictive ability of our models may be adversely affected by their increasing complexity, unless the models are properly constrained by observations.
A field-based method for simultaneous measurements of the 18O and 13C soil CO2 efflux
Authors: Mortazavi B. , Prater J. L. , Chanton J. P.
Published: April 2010

Abstract. Three approaches for determining the stable isotopic composition (13C and 18O) of soil CO2 efflux were compared. A new technique employed mini-towers, constructed of open topped piping, that were placed on the soil surface to collect soil-emitted CO2. Samples were collected along a vertical gradient and analyzed for CO2 concentration and isotopic composition. These data were then used to produce a Keeling plot to determine the 18O and 13C of CO2 emitted from the soil. These results were then compared to the 18O and 13C of soil respired CO2 measured with two other techniques: (1) flux chambers and (2) estimation from the application of the diffusional fractionation factor to measured values of belowground soil 18O CO2 and to CO2 in equilibrium with soil water 18O. Mini-tower 18O Keeling plots were linear and highly significant (0.81<r2<0.96), in contrast to chamber 18O Keeling plots, which showed significant curvature, necessitating the use of a mass balance to calculate the 18O of respired CO2. In the chambers, the values determined for the 18O of soil respired CO2 approached the value of CO2 in equilibrium with surficial soil water, and the results were significantly 18O enriched relative to the mini-tower results and the 18O of soil CO2 efflux determined from soil CO2. There were close agreements between the three methods for the determination of the 13C of soil efflux CO2. Results suggest that the mini-towers can be effectively used in the field for determining the 18O and the 13C of soil respired CO2.
Past and present of sediment and carbon biogeochemical cycling models
Authors: Mackenzie F. T. , Lerman A. , Andersson A. J.
Published: April 2010

Abstract. The global carbon cycle is part of the much more extensive sedimentary cycle that involves large masses of carbon in the Earth's inner and outer spheres. Studies of the carbon cycle generally followed a progression in knowledge of the natural biological, then chemical, and finally geological processes involved, culminating in a more or less integrated picture of the biogeochemical carbon cycle by the 1920s. However, knowledge of the ocean's carbon cycle behavior has only within the last few decades progressed to a stage where meaningful discussion of carbon processes on an annual to millennial time scale can take place. In geologically older and pre-industrial time, the ocean was generally a net source of CO2 emissions to the atmosphere owing to the mineralization of land-derived organic matter in addition to that produced in situ and to the process of CaCO3 precipitation. Due to rising atmospheric CO2concentrations because of fossil fuel combustion and land use changes, the direction of the air-sea CO2 flux has reversed, leading to the ocean as a whole being a net sink of anthropogenic CO2. The present thickness of the surface ocean layer, where part of the anthropogenic CO2 emissions are stored, is estimated as of the order of a few hundred meters. The oceanic coastal zone net air-sea CO2 exchange flux has also probably changed during industrial time. Model projections indicate that in pre-industrial times, the coastal zone may have been net heterotrophic, releasing CO2 to the atmosphere from the imbalance between gross photosynthesis and total respiration. This, coupled with extensive CaCO3 precipitation in coastal zone environments, led to a net flux of CO2 out of the system. During industrial time the coastal zone ocean has tended to reverse its trophic status toward a non-steady state situation of net autotrophy, resulting in net uptake of anthropogenic CO2 and storage of carbon in the coastal ocean, despite the significant calcification that still occurs in this region. Furthermore, evidence from the inorganic carbon cycle indicates that deposition and net storage of CaCO3 in sediments exceed inflow of inorganic carbon from land and produce CO2 emissions to the atmosphere. In the shallow-water coastal zone, increase in atmospheric CO2 during the last 300 years of industrial time may have reduced the rate of calcification, and continuation of this trend is an issue of serious environmental concern in the global carbon balance.
Major role of marine vegetation on the oceanic carbon cycle
Authors: Duarte C. M. , Middelburg J. J. , Caraco N.
Published: April 2010

Abstract. The carbon burial in vegetated sediments, ignored in past assessments of carbon burial in the ocean, was evaluated using a bottom-up approach derived from upscaling a compilation of published individual estimates of carbon burial in vegetated habitats (seagrass meadows, salt marshes and mangrove forests) to the global level and a top-down approach derived from considerations of global sediment balance and a compilation of the organic carbon content of vegeatated sediments. Up-scaling of individual burial estimates values yielded a total carbon burial in vegetated habitats of 111 Tg C y-1. The total burial in unvegetated sediments was estimated to be 126 Tg C y-1, resulting in a bottom-up estimate of total burial in the ocean of 244 Tg C y-1, two-fold higher than estimates of oceanic carbon burial that presently enter global carbon budgets. The organic carbon concentrations in vegetated marine sediments exceeds by 2 to 10-fold those in shelf/deltaic sediments. Top-down recalculation of ocean sediment budgets to account for these, previously neglected, organic-rich sediments, yields a top-down carbon burial estimate of 197 Tg C y-1, with vegetated coastal habitats contributing about 50%. Even though vegetated carbon burial contribute about half of the total carbon burial in the ocean, burial represents a small fraction of the net production of these ecosystems, estimated at about 3031 Tg C y-1, suggesting that bulk of the benthic NEP must support excess respiration in other compartments, such as unvegetated sediments and the coastal pelagic compartment. The total excess organic carbon available to be exported to the ocean is estimated at between 769 to 3177 Tg C y-1, the bulk of which must be respired in the open ocean. Widespread loss of vegetated coastal habitats must have reduced carbon burial in the ocean by about 30 Tg C y-1, identifying the destruction of these ecosystems as an important loss of CO2 sink capacity in the biosphere.
Investigation on the trophic state of the North Sea for three years (1994–1996) simulated with the ecosystem model ERSEM – the role of a sharp NAOI decline
Authors: Lenhart H. J. , Pätsch J. , Kühn W. , Moll A. , Pohlmann T.
Published: April 2010

Abstract. Applying the ecosystem model ERSEM to the Northwest-European shelf (48°–63°N, 15°W–12°E) the years 1994-1996 were simulated, which exhibit an extremely strong transition in North Atlantic Oscillation index (NAOI): from a high-NAOI to a low-NAOI regime. In order to be far enough from the boundaries of the model area the results and budgets are focussed on the North Sea area. For this region the model was validated against climatological values of nitrate as representative nutrient. For all three years the North Sea was found to be net heterotrophic: organic material was imported, inorganic material was exported. The strength of this "remineralisation-machine" was large during NAOI-high years (1994 and 1995). It was weaker in 1996 with a low NAOI. This was caused by higher net primary production in the northern North Sea during summer 1996. In this year the stratification was weaker and began later allowing the deep nutrient-rich water in the northern North Sea to be mixed into the upper layers also during early summer.
Submarine groundwater discharge to a small estuary estimated from radon and salinity measurements and a box model
Authors: Crusius J. , Koopmans D. , Bratton J. F. , Charette M. A. , Kroeger K. D. , Henderson P. , Ryckman L. , Halloran K. , Colman J. A.
Published: April 2010

Abstract. Submarine groundwater discharge was quantified by a variety of methods in Salt Pond, adjacent to Nauset Marsh on Cape Cod, USA. Discharge estimates based on radon and salinity took advantage of the presence of the narrow channel connecting Salt Pond to Nauset Marsh, which allowed constructing whole-pond mass balances as water flowed in and out due to tidal fluctuations. A box model was used to estimate discharge separately to Salt Pond and to the channel by simulating the timing and magnitude of variations in the radon and salinity data in the channel. Discharge to the pond is estimated to be 2200±1100 m3d-1, while discharge to the channel is estimated to be 300±150 m3d-1, for a total discharge of 2500±1250 m3d-1 to the Salt Pond system. This translates to an average groundwater flow velocity of 3±1.5 cm d-1 Seepage meter flow estimates are broadly consistent with this figure, provided discharge is confined to shallow sediments (water depth <1 m). The radon data can be modeled assuming all groundwater fluxes to both the channel and to the pond are fresh, with no need to invoke a saline component. The absence of a saline component in the radon flux may be due to removal of radon from saline groundwater by recent advection of seawater or it may to due to the presence of impermeable sediments in the center of the pond that limit seawater recirculation. This groundwater flux estimated from the radon and salinity data is comparable to a value of 3200-4500 m3d-1 predicted by a recent hydrologic model (Masterson, 2004; Colman and Masterson, 2004). Additional work is needed to determine if the measured rate of discharge is representative of the long-term average, and to determine the rate of groundwater discharge seaward of Salt Pond. Data also suggest a TDN flux from groundwater to Salt Pond of ~2.6 mmol m-2d-1, a figure comparable to fluxes observed in other eutrophic settings.
A simple model to estimate exchange rates of nitrogen dioxide between the atmosphere and forests
Authors: Duyzer J. , Pilegaard K. , Simpson D. , Weststrate H. , Walton S.
Published: April 2010

Abstract. A simple model (2layer) was constructed that describes the exchange of the reactive gases NO, NO2 and O3 between forest and the atmosphere. The model uses standard equations to describe exchange processes and uptake of gases. It also takes into account reactions taking place in the trunk space between NO and O3 and photolysis of NO2. All equations are solved analytically leading to a scheme efficient enough to allow implementation in a large scale dispersion model such as the EMEP model. The model is tested on two comprehensive datasets obtained in a coniferous forest and a deciduous forest. The model calculations of NO2 and O3 fluxes to the forest were compared with observations of these fluxes. Although the comparison is often not perfect some of the striking features of the observed fluxes i.e. upward fluxes of NO2 were simulated quite well. The impact of chemical reactions between O3, NO and NO2 in the trunk space appear to have a significant effect on the deposition rate of O2. This is especially true during the night and more so for forests emitting large amounts of NO.
Causes and timing of future biosphere extinction
Authors: Franck S. , Bounama C. , von Bloh W.
Published: April 2010

Abstract. We present a minimal model for the global carbon cycle of the Earth containing the reservoirs mantle, ocean floor, continental crust, biosphere, and the kerogen, as well as the aggregated reservoir ocean and atmosphere. The model is specified by introducing three different types of biosphere: procaryotes, eucaryotes, and complex multicellular life. We find that from the Archaean to the future a procaryotic biosphere always exists. 2 Gyr ago eucaryotic life first appears. The emergence of complex multicellular life is connected with an explosive increase in biomass and a strong decrease in Cambrian global surface temperature at about 0.54 Gyr ago. In the long-term future the three types of biosphere will die out in reverse sequence of their appearance. We show that there is no evidence for an implosion-like extinction in contrast to the Cambrian explosion. The ultimate life span of the biosphere is defined by the extinction of procaryotes in about 1.6 Gyr.
Foliage surface ozone deposition: a role for surface moisture?
Authors: Altimir N. , Kolari P. , Tuovinen J.-P. , Vesala T. , Bäck J. , Suni T. , Kulmala M. , Hari P.
Published: April 2010

Abstract. This paper addresses the potential role of surface wetness in ozone deposition to plant foliage. We studied Scots pine foliage in field conditions at the SMEARII field measurement station in Finland. We used a combination of data from flux measurement at the shoot (enclosure) and canopy scale (eddy covariance), information from foliage surface wetness sensors, and a broad array of ancillary measurements such as radiation, precipitation, temperature, and relative humidity. Environmental conditions were defined as moist during rain or high relative humidity, and the subsequent 12 h from such events, circumstances that were frequent at this boreal site. From the measured fluxes we estimated the ozone conductance as the expression of the strength of the ozone removal surface sink or total deposition. Further, the stomatal contribution was estimated and the remaining deposition was analysed as non-stomatal sink. The combined time series of measurements showed that both shoot and canopy-scale ozone total deposition were enhanced when moist conditions occurred. On average, the estimated stomatal deposition accounted for half of the measured removal at the shoot scale and one third at the canopy scale. However, during dry conditions the estimated stomatal uptake predicted the behaviour of the measured deposition, but during moist conditions there was disagreement. The estimated non-stomatal sink was analysed against several environmental factors and the clearest correspondence was found with ambient relative humidity. The relationship disappeared under 70% relative humidity, a threshold that coincides with the value at which surface moisture gathers at the foliage surface according to the leaf surface wetness measurements. This suggests the non-stomatal ozone sink on the foliage to be modulated by the surface films. We attempted to extract such potential modulation with the estimated film formation via the theoretical expression or adsorption isotherm. Whereas this procedure could predict the behaviour of the non-stomatal sink, it implied a chemical sink that was not accountable as simple ozone decomposition. We discuss the existence of other mechanisms whose relevance needs to be clarified, in particular: a significant stomatal aperture neglected in the estimations, and a potentially large chemical sink offered by reactive biogenic organic volatile compounds.