bluuebunny/crossref_metadata_2025 huggingface dataset:
Figure S1 from Anti-CD137 Suppresses Tumor Growth by Blocking Reverse Signaling by CD137 Ligand
Authors: Kang Sang W. , Lee Sang C. , Park So H. , Kim Juyang , Kim Hyeon H. , Lee Hyeon-Woo , Seo Su K. , Kwon Byoung S. , Cho Hong R. , Kwon Byungsuk
Published: March 2023

Figure S1. CD137-/- and anti-CD137-injected mice show systemic antitumor
Figure S10 from Lysyl Oxidase–like Protein LOXL2 Promotes Lung Metastasis of Breast Cancer
Authors: Salvador Fernando , Martin Alberto , López-Menéndez Celia , Moreno-Bueno Gema , Santos Vanesa , Vázquez-Naharro Alberto , Santamaría Patricia G. , Morales Saleta , Dubus Pierre R. , Muinelo-Romay Laura , López-López Rafael , Tung Jason C. , Weaver Valerie M. , Portillo Francisco , Cano Amparo
Published: March 2023

CK14 expression in xenografts from PyMT cells overexpressing Loxl2
Supplementary material from Case Studies of Gastric, Lung, and Oral Cancer Connect Etiologic Agent Prevalence to Cancer Incidence
Authors: Brouwer Andrew F. , Eisenberg Marisa C. , Meza Rafael
Published: March 2023

The supplement contains model derivations, additional figures, description of the models with time-varying promotion, and proofs of model identifiability.
Supplementary Figures from O-GlcNAcylation of the Tumor Suppressor FOXO3 Triggers Aberrant Cancer Cell Growth
Authors: Shin Heon , Cha Hyun-Jeong , Na Keun , Lee Min Jung , Cho Jin-Young , Kim Chae-Yeon , Kim Eun Kyung , Kang Chang Moo , Kim Hoguen , Paik Young-Ki
Published: March 2023

This file contains all Supplementary figures visualizing results from differential expression analyses, MS and tandem MS/MS spectrum, establishment of mutant cell lines, localization and promoter binding efficiency.
Supplemental tables and legend from Transplantation of iPS-Derived Tumor Cells with a Homozygous MHC Haplotype Induces GRP94 Antibody Production in MHC-Matched Macaques
Authors: Ishigaki Hirohito , Maeda Toshinaga , Inoue Hirokazu , Akagi Tsuyoshi , Sasamura Takako , Ishida Hideaki , Inubushi Toshiro , Okahara Junko , Shiina Takashi , Nakayama Misako , Itoh Yasushi , Ogasawara Kazumasa
Published: March 2023

Table S1: Virus vectors used in the present study, Table S2: Primer sets for RT-PCR, Table S3: List of the predicted peptides according to the results of LC-MS/MS, and supplemental figure legends
Supplementary Tables 2-8, 13 and 14 from Integrative Modeling Identifies Key Determinants of Inhibitor Sensitivity in Breast Cancer Cell Lines
Authors: Jastrzebski Katarzyna , Thijssen Bram , Kluin Roelof J.C. , de Lint Klaas , Majewski Ian J. , Beijersbergen Roderick L. , Wessels Lodewyk F.A.
Published: March 2023

This file contains Supplementary Tables 2-8, 13 and 14: Supplementary Table 2: Cell line doubling times estimated from growth curves of confluence measurements. Supplementary Table 3: Normalized dose response data for each of the seven kinase inhibitors. Supplementary Table 4: Absolute IC50 values estimated from the dose response data. Supplementary Table 5: Normalized and log-transformed read counts obtained from RNA sequencing. Supplementary Table 6: Mutations called from the DNA sequencing data. Supplementary Table 7: Copy number estimates obtained from the off-target DNA sequencing reads using CopywriteR. Supplementary Table 8: Protein and phosphorylation levels obtained from the RPPA assay. Supplementary Table 13: Comparison of mutation frequencies in the cell line panel with mutation frequencies observed for breast cancer in The Cancer Genome Atlas. Supplementary Table 14: Differential expression analysis of RPPA and RNAseq data between sensitive and resistant cell lines for each of the kinase inhibitors.
Figure S3 from Transplantation of iPS-Derived Tumor Cells with a Homozygous MHC Haplotype Induces GRP94 Antibody Production in MHC-Matched Macaques
Authors: Ishigaki Hirohito , Maeda Toshinaga , Inoue Hirokazu , Akagi Tsuyoshi , Sasamura Takako , Ishida Hideaki , Inubushi Toshiro , Okahara Junko , Shiina Takashi , Nakayama Misako , Itoh Yasushi , Ogasawara Kazumasa
Published: March 2023

Co-existence of GRPs and monkey IgG on the surface of immortalized cells
Figure S2 from Transplantation of iPS-Derived Tumor Cells with a Homozygous MHC Haplotype Induces GRP94 Antibody Production in MHC-Matched Macaques
Authors: Ishigaki Hirohito , Maeda Toshinaga , Inoue Hirokazu , Akagi Tsuyoshi , Sasamura Takako , Ishida Hideaki , Inubushi Toshiro , Okahara Junko , Shiina Takashi , Nakayama Misako , Itoh Yasushi , Ogasawara Kazumasa
Published: March 2023

SDS-PAGE of the lysates of PTY cells and immortalized fibroblasts
Supplementary File 1 - Models and inference results from Integrative Modeling Identifies Key Determinants of Inhibitor Sensitivity in Breast Cancer Cell Lines
Authors: Jastrzebski Katarzyna , Thijssen Bram , Kluin Roelof J.C. , de Lint Klaas , Majewski Ian J. , Beijersbergen Roderick L. , Wessels Lodewyk F.A.
Published: March 2023

This archive contains all files necessary for running the inference in BCM, including the models in BCM model specification format, processed data and configuration files. The archive also contains graphs of each of the inference results, including posterior distributions, posterior predictive distributions and sample traces.
Supplementary Figure Legends from Enhanced Acid Sphingomyelinase Activity Drives Immune Evasion and Tumor Growth in Non–Small Cell Lung Carcinoma
Authors: Kachler Katerina , Bailer Maximilian , Heim Lisanne , Schumacher Fabian , Reichel Martin , Holzinger Corinna D. , Trump Sonja , Mittler Susanne , Monti Juliana , Trufa Denis I. , Rieker Ralf J. , Hartmann Arndt , Sirbu Horia , Kleuser Burkhard , Kornhuber Johannes , Finotto Susetta
Published: March 2023

Supplementary Figure Legends
Supplementary Table 4 from The Tumor Suppressor CIC Directly Regulates MAPK Pathway Genes via Histone Deacetylation
Authors: Weissmann Simon , Cloos Paul A. , Sidoli Simone , Jensen Ole N. , Pollard Steven , Helin Kristian
Published: March 2023

Supplementary Table 4 shows global gene expression changes in G144 cells (WT and CIC-KO) in response to MEK inhibition. Expression changes of CIC target genes are also shown as independent lists.
Supplementary Table 3 from The Tumor Suppressor CIC Directly Regulates MAPK Pathway Genes via Histone Deacetylation
Authors: Weissmann Simon , Cloos Paul A. , Sidoli Simone , Jensen Ole N. , Pollard Steven , Helin Kristian
Published: March 2023

Supplementary Table 3 shows proteins co-purified with CIC in HEK-293 cells identified by mass spectrometry.
Supplementary Figure 1 from Enhanced Acid Sphingomyelinase Activity Drives Immune Evasion and Tumor Growth in Non–Small Cell Lung Carcinoma
Authors: Kachler Katerina , Bailer Maximilian , Heim Lisanne , Schumacher Fabian , Reichel Martin , Holzinger Corinna D. , Trump Sonja , Mittler Susanne , Monti Juliana , Trufa Denis I. , Rieker Ralf J. , Hartmann Arndt , Sirbu Horia , Kleuser Burkhard , Kornhuber Johannes , Finotto Susetta
Published: March 2023

Levels of different Ceramide and Sphingomyelin molecular species measured in the blood serum of patients with ADC and SCC as well as in healthy donors
Supplementary Table 1 from The Tumor Suppressor CIC Directly Regulates MAPK Pathway Genes via Histone Deacetylation
Authors: Weissmann Simon , Cloos Paul A. , Sidoli Simone , Jensen Ole N. , Pollard Steven , Helin Kristian
Published: March 2023

Supplementary Table 1 contains information about primers used for quantification of gene expression changes, chromatin immunoprecipitation (ChIP), cloning, sequences used for CRISPR/Cas9 mediated knockout and antibodies used in the study.
Supplementary Table S4 from Clinical Proteomics of Breast Cancer Reveals a Novel Layer of Breast Cancer Classification
Authors: Yanovich Gali , Agmon Hadar , Harel Michal , Sonnenblick Amir , Peretz Tamar , Geiger Tamar
Published: March 2023

RPPA data
Supplementary Table S3 from Clinical Proteomics of Breast Cancer Reveals a Novel Layer of Breast Cancer Classification
Authors: Yanovich Gali , Agmon Hadar , Harel Michal , Sonnenblick Amir , Peretz Tamar , Geiger Tamar
Published: March 2023

Enrichment analyses
Supplementary Table S1 and Figures S1- S5 from Metabolic Imaging Detects Low Levels of Glycolytic Activity That Vary with Levels of c-Myc Expression in Patient-Derived Xenograft Models of Glioblastoma
Authors: Mair Richard , Wright Alan J. , Ros Susana , Hu De-en , Booth Tom , Kreis Felix , Rao Jyotsna , Watts Colin , Brindle Kevin M.
Published: March 2023

Supplementary Table and Figures
Supplementary Movie S4. from Actin Cytoskeleton Remodeling Drives Breast Cancer Cell Escape from Natural Killer–Mediated Cytotoxicity
Authors: Al Absi Antoun , Wurzer Hannah , Guerin Coralie , Hoffmann Celine , Moreau Flora , Mao Xianqing , Brown-Clay Joshua , Petrolli Rémi , Casellas Carla Pou , Dieterle Monika , Thiery Jean-Paul , Chouaib Salem , Berchem Guy , Janji Bassam , Thomas Clément
Published: March 2023

Time lapse imaging movie showing typical actin cytoskeleton configurations and dynamics in MCF-7 cells upon NK cell attack. Individual Z stacks were taken every minute over a period of 77 minutes. Time lapse movies were assembled from the Z stacks in NIH ImageJ and played at a fast frame rate (5 frames per second). NK cells are stained in red (PKH26) whereas the LifeAct-mEGFP-expressing tumour cell appears in green.
Table S4 from Tau Mutations Serve as a Novel Risk Factor for Cancer
Authors: Rossi Giacomina , Redaelli Veronica , Contiero Paolo , Fabiano Sabrina , Tagliabue Giovanna , Perego Paola , Benussi Luisa , Bruni Amalia C. , Filippini Graziella , Farinotti Mariangela , Giaccone Giorgio , Buiatiotis Simona , Manzoni Claudia , Ferrari Raffaele , Tagliavini Fabrizio
Published: March 2023

Table S4 shows the functional annotation analysis evaluating Gene Ontology-Biological Processes (GO-BPs) enrichment, in order to gather insight into the biological functions associated with tau's entire interactome
Table S3 from Tau Mutations Serve as a Novel Risk Factor for Cancer
Authors: Rossi Giacomina , Redaelli Veronica , Contiero Paolo , Fabiano Sabrina , Tagliabue Giovanna , Perego Paola , Benussi Luisa , Bruni Amalia C. , Filippini Graziella , Farinotti Mariangela , Giaccone Giorgio , Buiatiotis Simona , Manzoni Claudia , Ferrari Raffaele , Tagliavini Fabrizio
Published: March 2023

Table S3 shows all cancer types found in tau-mutated and reference families
Supplementary Movie S2. from Actin Cytoskeleton Remodeling Drives Breast Cancer Cell Escape from Natural Killer–Mediated Cytotoxicity
Authors: Al Absi Antoun , Wurzer Hannah , Guerin Coralie , Hoffmann Celine , Moreau Flora , Mao Xianqing , Brown-Clay Joshua , Petrolli Rémi , Casellas Carla Pou , Dieterle Monika , Thiery Jean-Paul , Chouaib Salem , Berchem Guy , Janji Bassam , Thomas Clément
Published: March 2023

Typical actin cytoskeleton organization observed in most NK cell-conjugated MCF-7 cells. The cell conjugate was acquired on a LSM880 laser scanning confocal microscope (Carl Zeiss) with Airyscan in the high-resolution mode, and the 3D projection was assembled and animated using Zeiss Zen Software. Then NK cell was stained in red (PKH26) whereas the LifeAct-mEGFP-expressing tumour cell appears in green.
Supplementary Figures S1-S6 from Actin Cytoskeleton Remodeling Drives Breast Cancer Cell Escape from Natural Killer–Mediated Cytotoxicity
Authors: Al Absi Antoun , Wurzer Hannah , Guerin Coralie , Hoffmann Celine , Moreau Flora , Mao Xianqing , Brown-Clay Joshua , Petrolli Rémi , Casellas Carla Pou , Dieterle Monika , Thiery Jean-Paul , Chouaib Salem , Berchem Guy , Janji Bassam , Thomas Clément
Published: March 2023

Supplementary Figures S1-S6 and their legends
Table S2 from miRNA Profiling of Magnetic Nanopore–Isolated Extracellular Vesicles for the Diagnosis of Pancreatic Cancer
Authors: Ko Jina , Bhagwat Neha , Black Taylor , Yee Stephanie S. , Na Young-Ji , Fisher Stephen , Kim Junhyong , Carpenter Erica L. , Stanger Ben Z. , Issadore David
Published: March 2023

Differentially expressed miRNAs from clinical samples.
Supplementary Figures S6- S12 from Identification of a Small Molecule That Selectively Inhibits ERG-Positive Cancer Cell Growth
Authors: Mohamed Ahmed A. , Xavier Charles P. , Sukumar Gauthaman , Tan Shyh-Han , Ravindranath Lakshmi , Seraj Nishat , Kumar Vineet , Sreenath Taduru , McLeod David G. , Petrovics Gyorgy , Rosner Inger L. , Srivastava Meera , Strovel Jeffrey , Malhotra Sanjay V. , LaRonde Nicole A. , Dobi Albert , Dalgard Clifton L. , Srivastava Shiv
Published: March 2023

S6. Evaluation of combined effect of ERGi-USU and AR inhibitors on CaP cell growth, S7. Selective inhibition of ERG positive cancer cells by ERGi-USU in mouse xenograft model, S8. Assessment of effect of RIOK knock down in ERG positive VCaP cells, S9. Fluorescence quenching data obtained upon titration of A. Human RiOK2 (HsRIOK2) and B. C.thermophilum Riok2, with ERGi-USU, S10. Evaluation of mechanisms of ERGi-USU mediated cell growth inhibition, S11. Validation of the response of ERGi-USU on CaP-associated kinases, S12. ERGi-USU binds to RIOK2 and inhibits levels of ERG and RIOK2 protein in the context of cancer cells
Table S1 from miRNA Profiling of Magnetic Nanopore–Isolated Extracellular Vesicles for the Diagnosis of Pancreatic Cancer
Authors: Ko Jina , Bhagwat Neha , Black Taylor , Yee Stephanie S. , Na Young-Ji , Fisher Stephen , Kim Junhyong , Carpenter Erica L. , Stanger Ben Z. , Issadore David
Published: March 2023

miRNA biomarker selection from EV miRNA Sequencing.
Supplementary Figures S1-S5 from Identification of a Small Molecule That Selectively Inhibits ERG-Positive Cancer Cell Growth
Authors: Mohamed Ahmed A. , Xavier Charles P. , Sukumar Gauthaman , Tan Shyh-Han , Ravindranath Lakshmi , Seraj Nishat , Kumar Vineet , Sreenath Taduru , McLeod David G. , Petrovics Gyorgy , Rosner Inger L. , Srivastava Meera , Strovel Jeffrey , Malhotra Sanjay V. , LaRonde Nicole A. , Dobi Albert , Dalgard Clifton L. , Srivastava Shiv
Published: March 2023

S1. Comparison and confirmation of ERGi-USU effect on ERG protein, cell growth and gene expression, S2. Antibody based Screening and identification of small molecule inhibitors of the ERG oncoprotein expression, S3. Evaluation of dose-dependent effect of ERGi-USU on ERG transcript with ERG cell panel, S4. Evaluation of the effect of ERGi-USU on cell growth of ERG negative prostate cancer cell lines, S5. ERGi-USU selectively decreases AR protein levels, only in TMPRSS2-ERG harboring VCaP cells.
Figure S2 from miRNA Profiling of Magnetic Nanopore–Isolated Extracellular Vesicles for the Diagnosis of Pancreatic Cancer
Authors: Ko Jina , Bhagwat Neha , Black Taylor , Yee Stephanie S. , Na Young-Ji , Fisher Stephen , Kim Junhyong , Carpenter Erica L. , Stanger Ben Z. , Issadore David
Published: March 2023

Significantly enriched pathways from the 11 identified miRNA markers.
Supplementary Figures CLEAN from Synthetic DNA-Encoded Monoclonal Antibody Delivery of Anti–CTLA-4 Antibodies Induces Tumor Shrinkage In Vivo
Authors: Duperret Elizabeth K. , Trautz Aspen , Stoltz Regina , Patel Ami , Wise Megan C. , Perales-Puchalt Alfredo , Smith Trevor , Broderick Kate E. , Masteller Emma , Kim J. Joseph , Humeau Laurent , Muthumani Kar , Weiner David B.
Published: March 2023

Supplementary Figure 1 shows the anti-mouse CTLA-4 DMAb design. Supplementary Figure 2 shows the efficacy of the recombinant 9D9 antibody in the Sa1N tumor model. Supplementary Figure 3 shows that the mouse anti-mouse CTLA-4 DMAb induces immune memory and protection from tumor re-challenge. Supplementary Figure 4 shows the efficacy of the mouse anti-mouse CTLA-4 DMAb delivered at an earlier time point. Supplementary Figure 5 shows that the anti-mouse CTLA-4 DMAb induces T cell infiltration into tumors. Supplementary Figure 6 shows the efficiency of CD4 and CD8 depletion antibodies.
Supplementary File 1 from HORMAD1 Is a Negative Prognostic Indicator in Lung Adenocarcinoma and Specifies Resistance to Oxidative and Genotoxic Stress
Authors: Nichols Brandt A. , Oswald Nathaniel W. , McMillan Elizabeth A. , McGlynn Kathleen , Yan Jingsheng , Kim Min S. , Saha Janapriya , Mallipeddi Prema L. , LaDuke Sydnie A. , Villalobos Pamela A. , Rodriguez-Canales Jaime , Wistuba Ignacio I. , Posner Bruce A. , Davis Anthony J. , Minna John D. , MacMillan John B. , Whitehurst Angelique W.
Published: March 2023

Top 10% (251 genes) identified by S2N analysis to be upregulated in HORMAD1 high LUAD tumors
Supplementary Figures from HORMAD1 Is a Negative Prognostic Indicator in Lung Adenocarcinoma and Specifies Resistance to Oxidative and Genotoxic Stress
Authors: Nichols Brandt A. , Oswald Nathaniel W. , McMillan Elizabeth A. , McGlynn Kathleen , Yan Jingsheng , Kim Min S. , Saha Janapriya , Mallipeddi Prema L. , LaDuke Sydnie A. , Villalobos Pamela A. , Rodriguez-Canales Jaime , Wistuba Ignacio I. , Posner Bruce A. , Davis Anthony J. , Minna John D. , MacMillan John B. , Whitehurst Angelique W.
Published: March 2023

Figure S1- Piericidin A and HORMAD1 association identified by NPF screen; Figure S2- Piericidin A induces DNA damage in NSCLC lines; Figure S3- S2N and geneset overlaps for HORMAD1 high LUAD tumors.
Supplementary materials and methods from SPON2 Promotes M1-like Macrophage Recruitment and Inhibits Hepatocellular Carcinoma Metastasis by Distinct Integrin–Rho GTPase–Hippo Pathways
Authors: Zhang Yan-Li , Li Qing , Yang Xiao-Mei , Fang Fang , Li Jun , Wang Ya-Hui , Yang Qin , Zhu Lei , Nie Hui-Zhen , Zhang Xue-Li , Feng Ming-Xuan , Jiang Shu-Heng , Tian Guang-Ang , Hu Li-Peng , Lee Ho-Young , Lee Su-Jae , Xia Qiang , Zhang Zhi-Gang
Published: March 2023

Supplementary materials and methods of isolation of hMC, immunohistochemical and H&E staining, 3D spheroid analysis, PLA, q-PCR, lentivirus production and cell transduction, siRNA, production of rSPON2, ELISA assay and chemokine assay
Supplementary table 1 from HP1γ Promotes Lung Adenocarcinoma by Downregulating the Transcription-Repressive Regulators NCOR2 and ZBTB7A
Authors: Alam Hunain , Li Na , Dhar Shilpa S. , Wu Sarah J. , Lv Jie , Chen Kaifu , Flores Elsa R. , Baseler Laura , Lee Min Gyu
Published: March 2023

Supplementary table S1 of Pro-tumorigenic function of HP1γ for lung adenocarcinoma
Supplementary data from HP1γ Promotes Lung Adenocarcinoma by Downregulating the Transcription-Repressive Regulators NCOR2 and ZBTB7A
Authors: Alam Hunain , Li Na , Dhar Shilpa S. , Wu Sarah J. , Lv Jie , Chen Kaifu , Flores Elsa R. , Baseler Laura , Lee Min Gyu
Published: March 2023

Supplementary methods tables and figures of Pro-tumorigenic function of HP1γ for lung adenocarcinoma
Table S5 from A Transcriptome-Wide Association Study Among 97,898 Women to Identify Candidate Susceptibility Genes for Epithelial Ovarian Cancer Risk
Authors: Lu Yingchang , Beeghly-Fadiel Alicia , Wu Lang , Guo Xingyi , Li Bingshan , Schildkraut Joellen M. , Im Hae Kyung , Chen Yian A. , Permuth Jennifer B. , Reid Brett M. , Teer Jamie K. , Moysich Kirsten B. , Andrulis Irene L. , Anton-Culver Hoda , Arun Banu K. , Bandera Elisa V. , Barkardottir Rosa B. , Barnes Daniel R. , Benitez Javier , Bjorge Line , Brenton James , Butzow Ralf , Caldes Trinidad , Caligo Maria A. , Campbell Ian , Chang-Claude Jenny , Claes Kathleen B.M. , Couch Fergus J. , Cramer Daniel W. , Daly Mary B. , deFazio Anna , Dennis Joe , Diez Orland , Domchek Susan M. , Dörk Thilo , Easton Douglas F. , Eccles Diana M. , Fasching Peter A. , Fortner Renée T. , Fountzilas George , Friedman Eitan , Ganz Patricia A. , Garber Judy , Giles Graham G. , Godwin Andrew K. , Goldgar David E. , Goodman Marc T. , Greene Mark H. , Gronwald Jacek , Hamann Ute , Heitz Florian , Hildebrandt Michelle A.T. , Høgdall Claus K. , Hollestelle Antoinette , Hulick Peter J. , Huntsman David G. , Imyanitov Evgeny N. , Isaacs Claudine , Jakubowska Anna , James Paul , Karlan Beth Y. , Kelemen Linda E. , Kiemeney Lambertus A. , Kjaer Susanne K. , Kwong Ava , Le Nhu D. , Leslie Goska , Lesueur Fabienne , Levine Douglas A. , Mattiello Amalia , May Taymaa , McGuffog Lesley , McNeish Iain A. , Merritt Melissa A. , Modugno Francesmary , Montagna Marco , Neuhausen Susan L. , Nevanlinna Heli , Nielsen Finn C. , Nikitina-Zake Liene , Nussbaum Robert L. , Offit Kenneth , Olah Edith , Olopade Olufunmilayo I. , Olson Sara H. , Olsson Håkan , Osorio Ana , Park Sue K. , Parsons Michael T. , Peeters Petra H.M. , Pejovic Tanja , Peterlongo Paolo , Phelan Catherine M. , Pujana Miquel Angel , Ramus Susan J. , Rennert Gad , Risch Harvey , Rodriguez Gustavo C. , Rodríguez-Antona Cristina , Romieu Isabelle , Rookus Matti A. , Rossing Mary Anne , Rzepecka Iwona K. , Sandler Dale P. , Schmutzler Rita K. , Setiawan Veronica W. , Sharma Priyanka , Sieh Weiva , Simard Jacques , Singer Christian F. , Song Honglin , Southey Melissa C. , Spurdle Amanda B. , Sutphen Rebecca , Swerdlow Anthony J. , Teixeira Manuel R. , Teo Soo H. , Thomassen Mads , Tischkowitz Marc , Toland Amanda E. , Trichopoulou Antonia , Tung Nadine , Tworoger Shelley S. , van Rensburg Elizabeth J. , Vanderstichele Adriaan , Vega Ana , Edwards Digna Velez , Webb Penelope M. , Weitzel Jeffrey N. , Wentzensen Nicolas , White Emily , Wolk Alicja , Wu Anna H. , Yannoukakos Drakoulis , Zorn Kristin K. , Gayther Simon A. , Antoniou Antonis C. , Berchuck Andrew , Goode Ellen L. , Chenevix-Trench Georgia , Sellers Thomas A. , Pharoah Paul D.P. , Zheng Wei , Long Jirong
Published: March 2023

Genes coregulated in predicted expression at 2q31.1, 9p22.3, 17q21.31 and 17q21.32.
Table S4 from A Transcriptome-Wide Association Study Among 97,898 Women to Identify Candidate Susceptibility Genes for Epithelial Ovarian Cancer Risk
Authors: Lu Yingchang , Beeghly-Fadiel Alicia , Wu Lang , Guo Xingyi , Li Bingshan , Schildkraut Joellen M. , Im Hae Kyung , Chen Yian A. , Permuth Jennifer B. , Reid Brett M. , Teer Jamie K. , Moysich Kirsten B. , Andrulis Irene L. , Anton-Culver Hoda , Arun Banu K. , Bandera Elisa V. , Barkardottir Rosa B. , Barnes Daniel R. , Benitez Javier , Bjorge Line , Brenton James , Butzow Ralf , Caldes Trinidad , Caligo Maria A. , Campbell Ian , Chang-Claude Jenny , Claes Kathleen B.M. , Couch Fergus J. , Cramer Daniel W. , Daly Mary B. , deFazio Anna , Dennis Joe , Diez Orland , Domchek Susan M. , Dörk Thilo , Easton Douglas F. , Eccles Diana M. , Fasching Peter A. , Fortner Renée T. , Fountzilas George , Friedman Eitan , Ganz Patricia A. , Garber Judy , Giles Graham G. , Godwin Andrew K. , Goldgar David E. , Goodman Marc T. , Greene Mark H. , Gronwald Jacek , Hamann Ute , Heitz Florian , Hildebrandt Michelle A.T. , Høgdall Claus K. , Hollestelle Antoinette , Hulick Peter J. , Huntsman David G. , Imyanitov Evgeny N. , Isaacs Claudine , Jakubowska Anna , James Paul , Karlan Beth Y. , Kelemen Linda E. , Kiemeney Lambertus A. , Kjaer Susanne K. , Kwong Ava , Le Nhu D. , Leslie Goska , Lesueur Fabienne , Levine Douglas A. , Mattiello Amalia , May Taymaa , McGuffog Lesley , McNeish Iain A. , Merritt Melissa A. , Modugno Francesmary , Montagna Marco , Neuhausen Susan L. , Nevanlinna Heli , Nielsen Finn C. , Nikitina-Zake Liene , Nussbaum Robert L. , Offit Kenneth , Olah Edith , Olopade Olufunmilayo I. , Olson Sara H. , Olsson Håkan , Osorio Ana , Park Sue K. , Parsons Michael T. , Peeters Petra H.M. , Pejovic Tanja , Peterlongo Paolo , Phelan Catherine M. , Pujana Miquel Angel , Ramus Susan J. , Rennert Gad , Risch Harvey , Rodriguez Gustavo C. , Rodríguez-Antona Cristina , Romieu Isabelle , Rookus Matti A. , Rossing Mary Anne , Rzepecka Iwona K. , Sandler Dale P. , Schmutzler Rita K. , Setiawan Veronica W. , Sharma Priyanka , Sieh Weiva , Simard Jacques , Singer Christian F. , Song Honglin , Southey Melissa C. , Spurdle Amanda B. , Sutphen Rebecca , Swerdlow Anthony J. , Teixeira Manuel R. , Teo Soo H. , Thomassen Mads , Tischkowitz Marc , Toland Amanda E. , Trichopoulou Antonia , Tung Nadine , Tworoger Shelley S. , van Rensburg Elizabeth J. , Vanderstichele Adriaan , Vega Ana , Edwards Digna Velez , Webb Penelope M. , Weitzel Jeffrey N. , Wentzensen Nicolas , White Emily , Wolk Alicja , Wu Anna H. , Yannoukakos Drakoulis , Zorn Kristin K. , Gayther Simon A. , Antoniou Antonis C. , Berchuck Andrew , Goode Ellen L. , Chenevix-Trench Georgia , Sellers Thomas A. , Pharoah Paul D.P. , Zheng Wei , Long Jirong
Published: March 2023

Association results after the adjustment for nearby GWAS index SNPs for genes with predicted gene expression levels associated with ovarian cancer risk at P < 2.21E-6.
Figure S3 from Glycoprotein nmb Is Exposed on the Surface of Dormant Breast Cancer Cells and Induces Stem Cell–like Properties
Authors: Chen Chen , Okita Yukari , Watanabe Yukihide , Abe Fumie , Fikry Muhammad Ali , Ichikawa Yumu , Suzuki Hiroyuki , Shibuya Akira , Kato Mitsuyasu
Published: March 2023

Detection of cell surface GPNMB expression in Hs578T cells cultured in different conditions.
Table S2 from A Transcriptome-Wide Association Study Among 97,898 Women to Identify Candidate Susceptibility Genes for Epithelial Ovarian Cancer Risk
Authors: Lu Yingchang , Beeghly-Fadiel Alicia , Wu Lang , Guo Xingyi , Li Bingshan , Schildkraut Joellen M. , Im Hae Kyung , Chen Yian A. , Permuth Jennifer B. , Reid Brett M. , Teer Jamie K. , Moysich Kirsten B. , Andrulis Irene L. , Anton-Culver Hoda , Arun Banu K. , Bandera Elisa V. , Barkardottir Rosa B. , Barnes Daniel R. , Benitez Javier , Bjorge Line , Brenton James , Butzow Ralf , Caldes Trinidad , Caligo Maria A. , Campbell Ian , Chang-Claude Jenny , Claes Kathleen B.M. , Couch Fergus J. , Cramer Daniel W. , Daly Mary B. , deFazio Anna , Dennis Joe , Diez Orland , Domchek Susan M. , Dörk Thilo , Easton Douglas F. , Eccles Diana M. , Fasching Peter A. , Fortner Renée T. , Fountzilas George , Friedman Eitan , Ganz Patricia A. , Garber Judy , Giles Graham G. , Godwin Andrew K. , Goldgar David E. , Goodman Marc T. , Greene Mark H. , Gronwald Jacek , Hamann Ute , Heitz Florian , Hildebrandt Michelle A.T. , Høgdall Claus K. , Hollestelle Antoinette , Hulick Peter J. , Huntsman David G. , Imyanitov Evgeny N. , Isaacs Claudine , Jakubowska Anna , James Paul , Karlan Beth Y. , Kelemen Linda E. , Kiemeney Lambertus A. , Kjaer Susanne K. , Kwong Ava , Le Nhu D. , Leslie Goska , Lesueur Fabienne , Levine Douglas A. , Mattiello Amalia , May Taymaa , McGuffog Lesley , McNeish Iain A. , Merritt Melissa A. , Modugno Francesmary , Montagna Marco , Neuhausen Susan L. , Nevanlinna Heli , Nielsen Finn C. , Nikitina-Zake Liene , Nussbaum Robert L. , Offit Kenneth , Olah Edith , Olopade Olufunmilayo I. , Olson Sara H. , Olsson Håkan , Osorio Ana , Park Sue K. , Parsons Michael T. , Peeters Petra H.M. , Pejovic Tanja , Peterlongo Paolo , Phelan Catherine M. , Pujana Miquel Angel , Ramus Susan J. , Rennert Gad , Risch Harvey , Rodriguez Gustavo C. , Rodríguez-Antona Cristina , Romieu Isabelle , Rookus Matti A. , Rossing Mary Anne , Rzepecka Iwona K. , Sandler Dale P. , Schmutzler Rita K. , Setiawan Veronica W. , Sharma Priyanka , Sieh Weiva , Simard Jacques , Singer Christian F. , Song Honglin , Southey Melissa C. , Spurdle Amanda B. , Sutphen Rebecca , Swerdlow Anthony J. , Teixeira Manuel R. , Teo Soo H. , Thomassen Mads , Tischkowitz Marc , Toland Amanda E. , Trichopoulou Antonia , Tung Nadine , Tworoger Shelley S. , van Rensburg Elizabeth J. , Vanderstichele Adriaan , Vega Ana , Edwards Digna Velez , Webb Penelope M. , Weitzel Jeffrey N. , Wentzensen Nicolas , White Emily , Wolk Alicja , Wu Anna H. , Yannoukakos Drakoulis , Zorn Kristin K. , Gayther Simon A. , Antoniou Antonis C. , Berchuck Andrew , Goode Ellen L. , Chenevix-Trench Georgia , Sellers Thomas A. , Pharoah Paul D.P. , Zheng Wei , Long Jirong
Published: March 2023

Chromosomal regions with predicted gene expression levels associated with epithelial ovarian cancer risk at P < 2.21E-6 with either ovarian or cross-tissue model.
Table S4 from Human Papilloma Virus Specific Immunogenicity and Dysfunction of CD8+ T Cells in Head and Neck Cancer
Authors: Krishna Sri , Ulrich Peaches , Wilson Eric , Parikh Falguni , Narang Pooja , Yang Shanshan , Read Amelia K. , Kim-Schulze Seunghee , Park Jin G. , Posner Marshall , Wilson Sayres Melissa A. , Sikora Andrew , Anderson Karen S.
Published: March 2023

Clustered correlation matrix values for each gene-set correlations
Table S1 from A Transcriptome-Wide Association Study Among 97,898 Women to Identify Candidate Susceptibility Genes for Epithelial Ovarian Cancer Risk
Authors: Lu Yingchang , Beeghly-Fadiel Alicia , Wu Lang , Guo Xingyi , Li Bingshan , Schildkraut Joellen M. , Im Hae Kyung , Chen Yian A. , Permuth Jennifer B. , Reid Brett M. , Teer Jamie K. , Moysich Kirsten B. , Andrulis Irene L. , Anton-Culver Hoda , Arun Banu K. , Bandera Elisa V. , Barkardottir Rosa B. , Barnes Daniel R. , Benitez Javier , Bjorge Line , Brenton James , Butzow Ralf , Caldes Trinidad , Caligo Maria A. , Campbell Ian , Chang-Claude Jenny , Claes Kathleen B.M. , Couch Fergus J. , Cramer Daniel W. , Daly Mary B. , deFazio Anna , Dennis Joe , Diez Orland , Domchek Susan M. , Dörk Thilo , Easton Douglas F. , Eccles Diana M. , Fasching Peter A. , Fortner Renée T. , Fountzilas George , Friedman Eitan , Ganz Patricia A. , Garber Judy , Giles Graham G. , Godwin Andrew K. , Goldgar David E. , Goodman Marc T. , Greene Mark H. , Gronwald Jacek , Hamann Ute , Heitz Florian , Hildebrandt Michelle A.T. , Høgdall Claus K. , Hollestelle Antoinette , Hulick Peter J. , Huntsman David G. , Imyanitov Evgeny N. , Isaacs Claudine , Jakubowska Anna , James Paul , Karlan Beth Y. , Kelemen Linda E. , Kiemeney Lambertus A. , Kjaer Susanne K. , Kwong Ava , Le Nhu D. , Leslie Goska , Lesueur Fabienne , Levine Douglas A. , Mattiello Amalia , May Taymaa , McGuffog Lesley , McNeish Iain A. , Merritt Melissa A. , Modugno Francesmary , Montagna Marco , Neuhausen Susan L. , Nevanlinna Heli , Nielsen Finn C. , Nikitina-Zake Liene , Nussbaum Robert L. , Offit Kenneth , Olah Edith , Olopade Olufunmilayo I. , Olson Sara H. , Olsson Håkan , Osorio Ana , Park Sue K. , Parsons Michael T. , Peeters Petra H.M. , Pejovic Tanja , Peterlongo Paolo , Phelan Catherine M. , Pujana Miquel Angel , Ramus Susan J. , Rennert Gad , Risch Harvey , Rodriguez Gustavo C. , Rodríguez-Antona Cristina , Romieu Isabelle , Rookus Matti A. , Rossing Mary Anne , Rzepecka Iwona K. , Sandler Dale P. , Schmutzler Rita K. , Setiawan Veronica W. , Sharma Priyanka , Sieh Weiva , Simard Jacques , Singer Christian F. , Song Honglin , Southey Melissa C. , Spurdle Amanda B. , Sutphen Rebecca , Swerdlow Anthony J. , Teixeira Manuel R. , Teo Soo H. , Thomassen Mads , Tischkowitz Marc , Toland Amanda E. , Trichopoulou Antonia , Tung Nadine , Tworoger Shelley S. , van Rensburg Elizabeth J. , Vanderstichele Adriaan , Vega Ana , Edwards Digna Velez , Webb Penelope M. , Weitzel Jeffrey N. , Wentzensen Nicolas , White Emily , Wolk Alicja , Wu Anna H. , Yannoukakos Drakoulis , Zorn Kristin K. , Gayther Simon A. , Antoniou Antonis C. , Berchuck Andrew , Goode Ellen L. , Chenevix-Trench Georgia , Sellers Thomas A. , Pharoah Paul D.P. , Zheng Wei , Long Jirong
Published: March 2023

Internal performance of ovarian and cross-tissue gene expression prediction models built using GTEx data.
Table S3 from Human Papilloma Virus Specific Immunogenicity and Dysfunction of CD8+ T Cells in Head and Neck Cancer
Authors: Krishna Sri , Ulrich Peaches , Wilson Eric , Parikh Falguni , Narang Pooja , Yang Shanshan , Read Amelia K. , Kim-Schulze Seunghee , Park Jin G. , Posner Marshall , Wilson Sayres Melissa A. , Sikora Andrew , Anderson Karen S.
Published: March 2023

Gene signatures for ssGSEA used in this study.
Table S2 from Human Papilloma Virus Specific Immunogenicity and Dysfunction of CD8+ T Cells in Head and Neck Cancer
Authors: Krishna Sri , Ulrich Peaches , Wilson Eric , Parikh Falguni , Narang Pooja , Yang Shanshan , Read Amelia K. , Kim-Schulze Seunghee , Park Jin G. , Posner Marshall , Wilson Sayres Melissa A. , Sikora Andrew , Anderson Karen S.
Published: March 2023

Summary of strong HLA-binders from all HPV16-genes for TCGA/UM cohort patient HLA alleles
Table S1 from Human Papilloma Virus Specific Immunogenicity and Dysfunction of CD8+ T Cells in Head and Neck Cancer
Authors: Krishna Sri , Ulrich Peaches , Wilson Eric , Parikh Falguni , Narang Pooja , Yang Shanshan , Read Amelia K. , Kim-Schulze Seunghee , Park Jin G. , Posner Marshall , Wilson Sayres Melissa A. , Sikora Andrew , Anderson Karen S.
Published: March 2023

Summary of all predicted candidate HPV16-E2, E6 and E7 epitopes used for experiments.
Figure S1-S6, Table S1-S2 from Transketolase Regulates the Metabolic Switch to Control Breast Cancer Cell Metastasis via the α-Ketoglutarate Signaling Pathway
Authors: Tseng Chien-Wei , Kuo Wen-Hung , Chan Shih-Hsuan , Chan Hong-Lin , Chang King-Jen , Wang Lu-Hai
Published: March 2023

Identification of differentially expressed proteins in tumors of different sizes (Fig. S1), TKT levels were expressed highest in lymph node metastatic tissues (Fig. S2), Knockdown of TKT suppresses lung metastasis of breast cancer cells in vivo (Fig. S3), Downregulation of TKT does not affect lung targeting of breast cancer cells (Fig. S4), Reduction of TKT or α-KG treatment results in changes of glycolytic and TCA cycle metabolites (Fig. S5), Reduction of TKT or α-KG treatment affects the expression levels of TCA cycle and glycolytic enzymes (Fig. S6), Identification of differentially expressed proteins in tumors with different size (Table S1), Clinicopathologic features of TKT in breast cancer patients (Table S2)
Supplementary figures S1-S18 from Loss of TRIM29 Alters Keratin Distribution to Promote Cell Invasion in Squamous Cell Carcinoma
Authors: Yanagi Teruki , Watanabe Masashi , Hata Hiroo , Kitamura Shinya , Imafuku Keisuke , Yanagi Hiroko , Homma Akihiro , Wang Lei , Takahashi Hidehisa , Shimizu Hiroshi , Hatakeyama Shigetsugu
Published: March 2023

Supplemental figures Supplemental Fig. 1. TRIM29 is highly expressed in stratified epithelial tissues. Supplemental Fig. 2. The expression levels of TRIM29 protein are as high in benign skin tumors as they are in normal epidermis. Supplemental Fig. 3. The expression level of TRIM29 is low in keratoacanthoma-like SCC, but not in keratoacanthoma. Supplemental Fig. 4. Reduced TRIM29 RNA expression is associated with DNA methylation in cutaneous SCC. Supplemental Fig. 5. TRIM29 expression is silenced in cutaneous SCC cells. Supplemental Fig. 6. The cell proliferation of TRIM29-knockdown cancer cells does not differ significantly from that of the control cells. Supplemental Fig. 7. siRNA-mediated TRIM29-knockdown does not affect cell proliferation. Supplemental Fig. 8. TRIM29 regulates migration of SCC cells and immortalized epidermal keratinocytes. Supplemental Fig. 9. TRIM29 regulates migration of SCC cells and immortalized epidermal keratinocytes. Supplemental Fig. 10. TRIM29 knockdown increases cell invasion in SCC cells and immortalized epidermal keratinocytes. Supplemental Fig. 11. TRIM29 knockdown increases cell invasion in oral SCC cells. Supplemental Fig. 12. TRIM29 knockdown enhances the cancer cell metastasis. Supplemental Fig. 13. The top 20 list of proteins bound with FLAG-TRIM29 in mass spectrometry analysis. Supplemental Fig. 14. TRIM29 co-localizes with FAM83H. Supplemental Fig. 15. TRIM29 co-localizes with FAM83H. Supplemental Fig. 16. The zinc finger, B-box, coiled-coil, and C-terminal domains of TRIM29 are necessary for the formation of the TRIM29-keratin-FAM83H complex. Supplemental Fig. 17. Schema of the keratin distribution patterns. Supplemental Fig. 18. Knockdown of TRIM29 alters the distribution of keratins.
Supplementary Table S1 from Loss of TRIM29 Alters Keratin Distribution to Promote Cell Invasion in Squamous Cell Carcinoma
Authors: Yanagi Teruki , Watanabe Masashi , Hata Hiroo , Kitamura Shinya , Imafuku Keisuke , Yanagi Hiroko , Homma Akihiro , Wang Lei , Takahashi Hidehisa , Shimizu Hiroshi , Hatakeyama Shigetsugu
Published: March 2023

Supplemental Table S1. Patients attributes.
Supplementary Figures S1-6 from A RIPK3-PGE2 Circuit Mediates Myeloid-Derived Suppressor Cell–Potentiated Colorectal Carcinogenesis
Authors: Yan Guifang , Zhao Huakan , Zhang Qi , Zhou Yu , Wu Lei , Lei Juan , Wang Xiang , Zhang Jiangang , Zhang Xiao , Zheng Lu , Du Guangsheng , Xiao Weidong , Tang Bo , Miao Hongming , Li Yongsheng
Published: March 2023

Supplementary figures of CRC mice model, immune cell infiltration, function of MDSCs and T cells, proliferation of CRC cells, expression of RIPK3, COX-2, stat3, p-stat3, stat6, p-stat6, EP1-4, PKA, CREB, p-CREB, Arg-1, and PGE2 production
Pub fee email from A RIPK3-PGE2 Circuit Mediates Myeloid-Derived Suppressor Cell–Potentiated Colorectal Carcinogenesis
Authors: Yan Guifang , Zhao Huakan , Zhang Qi , Zhou Yu , Wu Lei , Lei Juan , Wang Xiang , Zhang Jiangang , Zhang Xiao , Zheng Lu , Du Guangsheng , Xiao Weidong , Tang Bo , Miao Hongming , Li Yongsheng
Published: March 2023

Pub fee email
Supplementary Data from Genomic Characterization of Six Virus-Associated Cancers Identifies Changes in the Tumor Immune Microenvironment and Altered Genetic Programs
Authors: Varn Frederick S. , Schaafsma Evelien , Wang Yue , Cheng Chao
Published: March 2023

Supplementary Table S1: TCGA sample sizes.
Supplementary Data from Genomic Characterization of Six Virus-Associated Cancers Identifies Changes in the Tumor Immune Microenvironment and Altered Genetic Programs
Authors: Varn Frederick S. , Schaafsma Evelien , Wang Yue , Cheng Chao
Published: March 2023

Supplementary Table S2: Information on GEO datasets used in this study
Supplementary Data from Genomic Characterization of Six Virus-Associated Cancers Identifies Changes in the Tumor Immune Microenvironment and Altered Genetic Programs
Authors: Varn Frederick S. , Schaafsma Evelien , Wang Yue , Cheng Chao
Published: March 2023

Supplementary Table S3: Virus signatures for each tumor type.
Figure S5 from SETD2 Haploinsufficiency for Microtubule Methylation Is an Early Driver of Genomic Instability in Renal Cell Carcinoma
Authors: Chiang Yun-Chen , Park In-Young , Terzo Esteban A. , Tripathi Durga Nand , Mason Frank M. , Fahey Catherine C. , Karki Menuka , Shuster Charles B. , Sohn Bo-Hwa , Chowdhury Pratim , Powell Reid T. , Ohi Ryoma , Tsai Yihsuan S. , de Cubas Aguirre A. , Khan Abid , Davis Ian J. , Strahl Brian D. , Parker Joel S. , Dere Ruhee , Walker Cheryl L. , Rathmell W. Kimryn
Published: March 2023

Reduced SETD2 levels promote genomic instability without compromising H3K36 trimethylation.
Supplementary Data from Genomic Characterization of Six Virus-Associated Cancers Identifies Changes in the Tumor Immune Microenvironment and Altered Genetic Programs
Authors: Varn Frederick S. , Schaafsma Evelien , Wang Yue , Cheng Chao
Published: March 2023

Supplementary Table S7: Survival results for PRECOG datasets
Figure S4 from SETD2 Haploinsufficiency for Microtubule Methylation Is an Early Driver of Genomic Instability in Renal Cell Carcinoma
Authors: Chiang Yun-Chen , Park In-Young , Terzo Esteban A. , Tripathi Durga Nand , Mason Frank M. , Fahey Catherine C. , Karki Menuka , Shuster Charles B. , Sohn Bo-Hwa , Chowdhury Pratim , Powell Reid T. , Ohi Ryoma , Tsai Yihsuan S. , de Cubas Aguirre A. , Khan Abid , Davis Ian J. , Strahl Brian D. , Parker Joel S. , Dere Ruhee , Walker Cheryl L. , Rathmell W. Kimryn
Published: March 2023

CENP/B and CREST status of micronuclei
Figure S3 from SETD2 Haploinsufficiency for Microtubule Methylation Is an Early Driver of Genomic Instability in Renal Cell Carcinoma
Authors: Chiang Yun-Chen , Park In-Young , Terzo Esteban A. , Tripathi Durga Nand , Mason Frank M. , Fahey Catherine C. , Karki Menuka , Shuster Charles B. , Sohn Bo-Hwa , Chowdhury Pratim , Powell Reid T. , Ohi Ryoma , Tsai Yihsuan S. , de Cubas Aguirre A. , Khan Abid , Davis Ian J. , Strahl Brian D. , Parker Joel S. , Dere Ruhee , Walker Cheryl L. , Rathmell W. Kimryn
Published: March 2023

Multiple Setd2w/f MEF clones display reduced aTubK40me3 protein (A) and relative Setd2 mRNA (B) levels
Figure S2 from SETD2 Haploinsufficiency for Microtubule Methylation Is an Early Driver of Genomic Instability in Renal Cell Carcinoma
Authors: Chiang Yun-Chen , Park In-Young , Terzo Esteban A. , Tripathi Durga Nand , Mason Frank M. , Fahey Catherine C. , Karki Menuka , Shuster Charles B. , Sohn Bo-Hwa , Chowdhury Pratim , Powell Reid T. , Ohi Ryoma , Tsai Yihsuan S. , de Cubas Aguirre A. , Khan Abid , Davis Ian J. , Strahl Brian D. , Parker Joel S. , Dere Ruhee , Walker Cheryl L. , Rathmell W. Kimryn
Published: March 2023

SETD2 loss promotes chromosomal abnormalities.
Figure S1 from SETD2 Haploinsufficiency for Microtubule Methylation Is an Early Driver of Genomic Instability in Renal Cell Carcinoma
Authors: Chiang Yun-Chen , Park In-Young , Terzo Esteban A. , Tripathi Durga Nand , Mason Frank M. , Fahey Catherine C. , Karki Menuka , Shuster Charles B. , Sohn Bo-Hwa , Chowdhury Pratim , Powell Reid T. , Ohi Ryoma , Tsai Yihsuan S. , de Cubas Aguirre A. , Khan Abid , Davis Ian J. , Strahl Brian D. , Parker Joel S. , Dere Ruhee , Walker Cheryl L. , Rathmell W. Kimryn
Published: March 2023

Micronuclei are a Common Feature among ccRCC-derived Cell Lines.
Supplementary Methods from Elevation of Stromal-Derived Mediators of Inflammation Promote Prostate Cancer Progression in African-American Men
Authors: Gillard Marc , Javier Rodrigo , Ji Yuan , Zheng S. Lilly , Xu Jianfeng , Brendler Charles B. , Crawford Susan E. , Pierce Brandon L. , Griend Donald J. Vander , Franco Omar E.
Published: March 2023

Supplementary Methods
Supplementary Figure 4 from Elevation of Stromal-Derived Mediators of Inflammation Promote Prostate Cancer Progression in African-American Men
Authors: Gillard Marc , Javier Rodrigo , Ji Yuan , Zheng S. Lilly , Xu Jianfeng , Brendler Charles B. , Crawford Susan E. , Pierce Brandon L. , Griend Donald J. Vander , Franco Omar E.
Published: March 2023

IHC staining and quantitation of FAP in AA andEA patient samples
Supplementary Tables from The Circular RNA circPRKCI Promotes Tumor Growth in Lung Adenocarcinoma
Authors: Qiu Mantang , Xia Wenjia , Chen Rui , Wang Siwei , Xu Youtao , Ma Zhifei , Xu Weizhang , Zhang Erbao , Wang Jie , Fang Tian , Hu Jingwen , Dong Gaochao , Yin Rong , Wang Jun , Xu Lin
Published: March 2023

Supplementary Tables 1-6. This file contains primers and siRNAs sequences used in this study, differentially expressed circRNAs in lung adenocarcinoma, and altered gene locus. Detail results about the correlation between circPRKCI expression and clinicopathologic characteristics, survival of lung adenocarcinoma patients are also included.
Supplementary Figure 3 from Elevation of Stromal-Derived Mediators of Inflammation Promote Prostate Cancer Progression in African-American Men
Authors: Gillard Marc , Javier Rodrigo , Ji Yuan , Zheng S. Lilly , Xu Jianfeng , Brendler Charles B. , Crawford Susan E. , Pierce Brandon L. , Griend Donald J. Vander , Franco Omar E.
Published: March 2023

Differential expression of selected secreted cytokines and densitometric quantitation
Figure S5 from The Circular RNA circPRKCI Promotes Tumor Growth in Lung Adenocarcinoma
Authors: Qiu Mantang , Xia Wenjia , Chen Rui , Wang Siwei , Xu Youtao , Ma Zhifei , Xu Weizhang , Zhang Erbao , Wang Jie , Fang Tian , Hu Jingwen , Dong Gaochao , Yin Rong , Wang Jun , Xu Lin
Published: March 2023

Mutation of miR-545/589 binding sites abolishes the proliferation-promoting effect of circPRKCI in A549 (A) and SPC-A1 cells (B, C). Mut1: mutation of miR-545 binding site; Mut2: mutation of miR-589 binding site; Mut1+2: mutation of both miR-545 and miR-589 binding sites; ** P <0.01; EV: empty vector
Supplementary Figure 1 from Elevation of Stromal-Derived Mediators of Inflammation Promote Prostate Cancer Progression in African-American Men
Authors: Gillard Marc , Javier Rodrigo , Ji Yuan , Zheng S. Lilly , Xu Jianfeng , Brendler Charles B. , Crawford Susan E. , Pierce Brandon L. , Griend Donald J. Vander , Franco Omar E.
Published: March 2023

Assessment of collagen deposition and neoangiogenesis in PCa samples from AA and EA patients. Quantitation of IHC staining of stromal markers
Figure S4 from The Circular RNA circPRKCI Promotes Tumor Growth in Lung Adenocarcinoma
Authors: Qiu Mantang , Xia Wenjia , Chen Rui , Wang Siwei , Xu Youtao , Ma Zhifei , Xu Weizhang , Zhang Erbao , Wang Jie , Fang Tian , Hu Jingwen , Dong Gaochao , Yin Rong , Wang Jun , Xu Lin
Published: March 2023

Rescue experiments of CCK-8 (B) and EdU assay (C). ** P <0.01, EV: empty vector
Figure S3 from The Circular RNA circPRKCI Promotes Tumor Growth in Lung Adenocarcinoma
Authors: Qiu Mantang , Xia Wenjia , Chen Rui , Wang Siwei , Xu Youtao , Ma Zhifei , Xu Weizhang , Zhang Erbao , Wang Jie , Fang Tian , Hu Jingwen , Dong Gaochao , Yin Rong , Wang Jun , Xu Lin
Published: March 2023

Biological functions of E2F7. A, B and D: Knockdown of E2F7 inhibits the proliferation of SPC-A1 cells, as shown by CCK-8, EdU, and colony formation assays. C: Silencing of E2F7 induces G1 phase cell cycle arrest. ** P <0.01, N.S: not significant; NC: negative control; EV: empty vector
Suppl Figs 4+5 from Intrathecal Viral Vector Delivery of Trastuzumab Prevents or Inhibits Tumor Growth of Human HER2-Positive Xenografts in Mice
Authors: Rothwell William T. , Bell Peter , Richman Laura K. , Limberis Maria P. , Tretiakova Anna P. , Li Mingyao , Wilson James M.
Published: March 2023

Anti-IgG immunofluorescence of tumor cryosections
Figure S2 from The Circular RNA circPRKCI Promotes Tumor Growth in Lung Adenocarcinoma
Authors: Qiu Mantang , Xia Wenjia , Chen Rui , Wang Siwei , Xu Youtao , Ma Zhifei , Xu Weizhang , Zhang Erbao , Wang Jie , Fang Tian , Hu Jingwen , Dong Gaochao , Yin Rong , Wang Jun , Xu Lin
Published: March 2023

Biological functions of miR-545 and miR-589. A: Schematic diagram showing the putative binding sites of the miRNAs associated with circPRKCI. B, C and E: miR-545 and miR-589 inhibit the proliferation of SPC-A1 cells, as shown by CCK-8, EDU, and colony formation assays. D: miR-545 and miR-589 induce G1 phase cell cycle arrest. ** P <0.01, N.S: not significant; NC: negative control
Suppl Fig 9 from Intrathecal Viral Vector Delivery of Trastuzumab Prevents or Inhibits Tumor Growth of Human HER2-Positive Xenografts in Mice
Authors: Rothwell William T. , Bell Peter , Richman Laura K. , Limberis Maria P. , Tretiakova Anna P. , Li Mingyao , Wilson James M.
Published: March 2023

IT AAV9.trastuzumab tumor prophylaxis in the setting of continuous systemic macrophage depletion
Suppl Fig 8 from Intrathecal Viral Vector Delivery of Trastuzumab Prevents or Inhibits Tumor Growth of Human HER2-Positive Xenografts in Mice
Authors: Rothwell William T. , Bell Peter , Richman Laura K. , Limberis Maria P. , Tretiakova Anna P. , Li Mingyao , Wilson James M.
Published: March 2023

Transgene expression and NK cell depletion
Suppl Fig 7 from Intrathecal Viral Vector Delivery of Trastuzumab Prevents or Inhibits Tumor Growth of Human HER2-Positive Xenografts in Mice
Authors: Rothwell William T. , Bell Peter , Richman Laura K. , Limberis Maria P. , Tretiakova Anna P. , Li Mingyao , Wilson James M.
Published: March 2023

AAV9.trastuzumab tumor prophylaxis in the setting of continuous NK cell depletion
Suppl Fig 3 from Intrathecal Viral Vector Delivery of Trastuzumab Prevents or Inhibits Tumor Growth of Human HER2-Positive Xenografts in Mice
Authors: Rothwell William T. , Bell Peter , Richman Laura K. , Limberis Maria P. , Tretiakova Anna P. , Li Mingyao , Wilson James M.
Published: March 2023

IT AAV9.trastuzumab tumor treatment
Suppl Fig 2 from Intrathecal Viral Vector Delivery of Trastuzumab Prevents or Inhibits Tumor Growth of Human HER2-Positive Xenografts in Mice
Authors: Rothwell William T. , Bell Peter , Richman Laura K. , Limberis Maria P. , Tretiakova Anna P. , Li Mingyao , Wilson James M.
Published: March 2023

Biodistribution of vector genome copies in brain
Suppl Fig 1 from Intrathecal Viral Vector Delivery of Trastuzumab Prevents or Inhibits Tumor Growth of Human HER2-Positive Xenografts in Mice
Authors: Rothwell William T. , Bell Peter , Richman Laura K. , Limberis Maria P. , Tretiakova Anna P. , Li Mingyao , Wilson James M.
Published: March 2023

IT AAV9.trastuzumab tumor prophylaxis pilot experiment
Figure S7 from Macrophage-Derived Neuropilin-2 Exhibits Novel Tumor-Promoting Functions
Authors: Roy Sohini , Bag Arup K. , Dutta Samikshan , Polavaram Navatha Shree , Islam Ridwan , Schellenburg Samuel , Banwait Jasjit , Guda Chittibabu , Ran Sophia , Hollingsworth Michael A. , Singh Rakesh K. , Talmadge James E. , Muders Michael H. , Batra Surinder K. , Datta Kaustubh
Published: March 2023

NRP2 deletion in macrophages in tumors in vivo and effect on the number of CD31+ vessel density