bluuebunny/crossref_metadata_2025 huggingface dataset:
Visual control of landing maneuvers in houseflies on vertical and inverted surfaces
Authors: Balebail Sujay , Raja Satish K , Sane Sanjay P.
Published: October 2018

Landing maneuvers in flies are complex behaviors that may be conceptually decomposed into a sequence of modular behaviors such as body deceleration, extension of legs, and body rotations which are coordinated to ensure controlled touchdown. The composite nature of these behaviors means that there is variability in the kinematics of landing maneuvers, making it difficult to identify the general rules that govern this behavior. Many previous studies have relied on tethered preparations to study landing behaviors, but tethering constrains some behavioral modules to operate in an open feedback control loop while others remain in closed-loop, thereby inducing experimental artefacts. On the other hand, freely flying insects are hard to precisely control, which may also increase behavioral variability. One approach towards understanding the general rules underlying landing behavior is to determine the common elements of landing kinematics on surfaces that are oriented in different ways. We conducted a series of experiments in which the houseflies,Musca Domestica, were lured to specific visual targets on either vertical or inverted horizontal substrates. These conditions elicited landing behaviors in the flies that could be captured accurately using multiple high-speed video cameras. We filmed the houseflies landing on surfaces oriented along two directions: vertical (vertical landings), and upside down (inverted landings). Our experiments reveal that flies that are able to land feet-first in a controlled manner must satisfy specific criteria, failing which their landing performance is compromised causing their heads to bump into the surface during landing. Flies landing smoothly on both surfaces initiate deceleration at approximately fixed distances from the substrate and in direct proportion to the component of flight velocity normal to the landing surface. The ratio of perpendicular distance to the substrate and velocity at the onset of deceleration was conserved, despite the large differences in the mechanics of the vertical vs. inverted landings. Flies extend their legs independently of distance from the landing surface or their approach velocity normal to the surface, regardless of the orientation of the landing substrate. Together, these results show that the visual initiation of deceleration is robust to orientation of the landing surface, whereas the initiation of leg-extension may be context-dependent and variable which allows flies to land on substrates of various orientations in a versatile manner. These findings may also be of interest to roboticists that are interested in developing flapping robots that can land on surfaces of different orientations.
Dynamics of gene expression in single root cells ofA. thaliana
Authors: Jean-Baptiste Ken , McFaline-Figueroa José L. , Alexandre Cristina M. , Dorrity Michael W. , Saunders Lauren , Bubb Kerry L. , Trapnell Cole , Fields Stanley , Queitsch Christine , Cuperus Josh T.
Published: October 2018

Single-cell RNA-seq can yield high-resolution cell-type-specific expression signatures that reveal new cell types and the developmental trajectories of cell lineages. Here, we apply this approach toA. thalianaroot cells to capture gene expression in 3,121 root cells. We analyze these data with Monocle 3, which orders single cell transcriptomes in an unsupervised manner and uses machine learning to reconstruct single-cell developmental trajectories along pseudotime. We identify hundreds of genes with cell-type-specific expression, with pseudotime analysis of several cell lineages revealing both known and novel genes that are expressed along a developmental trajectory. We identify transcription factor motifs that are enriched in early and late cells, together with the corresponding candidate transcription factors that likely drive the observed expression patterns. We assess and interpret changes in total RNA expression along developmental trajectories and show that trajectory branch points mark developmental decisions. Finally, by applying heat stress to whole seedlings, we address the longstanding question of possible heterogeneity among cell types in the response to an abiotic stress. Although the response of canonical heat shock genes dominates expression across cell types, subtle but significant differences in other genes can be detected among cell types. Taken together, our results demonstrate that single-cell transcriptomics holds promise for studying plant development and plant physiology with unprecedented resolution.
IsoSense: Frequency enhanced sensorless adaptive optics through structured illumination
Authors: Žurauskas Mantas , Dobbie Ian M. , Parton Richard M. , Phillips Mick A. , Göhler Antonia , Davis Ilan , Booth Martin J.
Published: October 2018

We present IsoSense, a wavefront sensing method that mitigates sample dependency in image based sensorless adaptive optics applications in microscopy. Our method employs structured illumination to create additional, high spatial frequencies in the image through custom illumination patterns. This improves the reliability of image quality metric calculations and enables sensorless wavefront measurement even in samples with sparse spatial frequency content. We demonstrate the feasibility of IsoSense for aberration correction in a deformable mirror based structured illumination superresolution fluorescence microscope.
A Model for the Peak-Interval Task Based on Neural Oscillation-Delimited States
Authors: Varella Thiago T. , Reyes Marcelo Bussotti , Caetano Marcelo S. , de Camargo Raphael Y.
Published: October 2018

Specific mechanisms underlying how the brain keeps track of time are largely unknown. Several existing computational models of timing reproduce behavioral results obtained with experimental psychophysical tasks, but only a few tackle the underlying biological mechanisms, such as the synchronized neural activity that occurs through-out brain areas. In this paper, we introduce a model for the peak-interval task based on neuronal network properties. We consider that Local Field Potential (LFP) oscillation cycles specify a sequence of states, represented as neuronal ensembles. Repeated presentation of time intervals during training reinforces the connections of specific ensembles to downstream networks. Later, during the peak-interval procedure, these downstream networks are reactivated by previously experienced neuronal ensembles, triggering actions at the learned time intervals. The model reproduces experimental response patterns from individual rats in the peak-interval procedure, satisfying relevant properties such as the Weber law. Finally, we provide a biological interpretation of the parameters of the model.
Antifungal effects of 3-(4-Phenyl-thiazol-2-yl)-2-thioxo-2, 3-dihydro-1H-quinazolin-4-one against Aspergillus Species
Authors: Singh Desh D. , Tiwari V. K. , Singh Rambir , Sharam G L , Dabur Rajesh
Published: October 2018

Aspergillus infections have become an important health problem with the increasing number of patients. Available antifungal drugs are lack with their spectrum, toxic or immunosuppressive in nature, so that need to develop new compound with high efficacy. To evaluate antifungal efficacy of synthesized compound and to identify the protein profile of Aspergillus fumigatus treated with antifungal. Clinical isolates of A. fumigatus, A. flavus and A. niger were cultured and efficacy of compound were conducted by Disc Diffusion Assay (DDA), Microbroth Dilution Assay (MDA). Percent of spore germination inhibition assay (PSGI), Time kill analysis and toxicity assay. The culture filtrate containing secretory proteins was collected after 24 h growth and expression of downregulated proteins were identified. We developed a new and useful quinazoline derivatives expected to antifungal activity. The result of anti-Aspergillus evolution revealed that one of the 3-(4-Phenyl-thiazol-2-yl)-2-thioxo-2, 3-dihydro-1H-quinazolin-4-one (DDVKT4Q) exhibited appreciable activity. The potency of compound was found concentration of 3.125 µg/disc by disc diffusion assay (DDA) and 15.625 µg/ml. by Microbroth Dilution Assay (MDA). The compound was nontoxic up to concentration 625 µg/ml and its lysed only 35.9% of human erythrocytes, at the highest dose tested. It’s observed that the treatment of pathogen with DDVKT-4Q targeted the expression of four proteins having molecular weights 18 kDa 37 KDa and 43 KDa proteins was completely inhibited or down regulated by the compound the extra cellular. The novel compound DDVKT-4Q, having antifungal activity Can be exploited further to develop new ideal antimycotic drugs.
Nanoscale robots exhibiting quorum sensing
Authors: Amir Yaniv , Abu-Horowitz Almogit , Werfel Justin , Bachelet Ido
Published: October 2018

Multi-agent systems demonstrate the ability to collectively perform complex tasks—e.g., construction1–2, search3, and locomotion4,5—with greater speed, efficiency, or effectiveness than could a single agent alone. Direct and indirect coordination methods allow agents to collaborate to share information and adapt their activity to fit dynamic situations. A well-studied example is quorum sensing (QS), a mechanism allowing bacterial communities to coordinate and optimize various phenotypes in response to population density. Here we implement, for the first time, bio-inspired QS in robots fabricated from DNA origami, which communicate by transmitting and receiving diffusing signals. The mechanism we describe includes features such as programmable response thresholds and quorum quenching, and is capable of being triggered by proximity of a specific target cell. Nanoscale robots with swarm intelligence could carry out tasks that have been so far unachievable in diverse fields such as industry, manufacturing and medicine.
Model Selection for Biological Crystallography
Authors: Babcock Nathan S. , Keedy Daniel A. , Fraser James S. , Sivak David A.
Published: October 2018

Structural biologists have fit increasingly complex model types to protein X-ray crystallographic data, motivated by higher-resolving crystals, greater computational power, and a growing appreciation for protein dynamics. Once fit, a more complex model will generally fit the experimental data better, but it also provides greater capacity to overfit to experimental noise. While refinement progress is normally monitored for a given model type with a fixed number of parameters, comparatively little attention has been paid to the selection among distinct model types where the number of parameters can vary. Using metrics derived in the statistical field of model comparison, we develop a framework for statistically rigorous inference of model complexity. From analysis of simulated data, we find that the resulting information criteria are less likely to prefer an erroneously complex model type and are less sensitive to noise, compared to the crystallographic cross-validation criterionRfree. Moreover, these information criteria suggest caution in using complex model types and for inferring protein conformational heterogeneity from experimental scattering data.
Identification and characterization of Aedes albopictus long noncoding RNAs provides insights into their roles in development and flavivirus infection
Authors: Azlan Azali , Yunus Muhammad Amir , Azzam Ghows
Published: October 2018

Aedes albopictus (Ae. albopictus) is an important vector of arboviruses such as Dengue virus (DENV), Chikungunya virus (CHIKV), and Zika virus (ZIKV). Long noncoding RNA (lncRNAs) have been identified in other vectors including Aedes aegypti and Anopheles mosquitoes, few of which have been implicated in immunity and viral replication. To identify lncRNAs with potential biological functions in Ae. albopictus, we performed RNA-seq on Ae. albopictus cells infected with DENV and ZIKV, and analyzed them together with public datasets. We identified a total of 23,899 transcripts, 16,089 were intergenic while 3,126 and 4,183 of them were antisense and intronic to annotated genes respectively. Ae. albopictus lncRNAs shared many of the characteristics with their invertebrate and vertebrate counterparts, such as low expression, low GC content, short in length, and low conservation even among closely related species. Compared to protein-coding genes, lncRNAs exhibited higher tendency to be expressed in a stage-specific manner. Besides, expression of lncRNAs and nearest protein-coding genes tended to be correlated, especially for the gene pairs within 1kb from each other. We also discovered that Ae. albopictus lncRNAs have the potential to act as precursors for miRNA and piRNAs, both of which have been implicated in antiviral defense in Aedes mosquito. Upon flavivirus infection, lncRNAs were observed to be differentially expressed, which possibly indicates the involvement of lncRNAs in the host-antiviral defense. Our study provides the first systematic identification of lncRNAs in Ae. albopictus, hence, offering a foundation for future studies of lncRNA functions.
A network of transcriptional repressors mediates auxin response specificity
Authors: Truskina Jekaterina , Han Jingyi , Galvan-Ampudia Carlos S. , Lainé Stéphanie , Brunoud Géraldine , Porco Silvana , Bågman Anne-Maarit , Smit Margot E. , Bennett Malcolm , Roudier Francois , Brady Siobhan M. , Bishopp Anthony , Vernoux Teva
Published: October 2018

INTRODUCTORY PARAGRAPH

The regulation of signalling capacity plays a pivotal role in setting developmental patterns in both plants and animals (1). The hormone auxin is a key signal for plant growth and development that acts through the AUXIN RESPONSE FACTOR (ARF) transcription factors (2). A subset of these ARFs comprises transcriptional activators of target genes in response to auxin, and are essential for regulating auxin signalling throughout the plant lifecycle (3). While ARF activators show tissue-specific expression patterns, it is unknown how their expression patterns are established. Chromatin modifications and accessibility studies revealed the chromatin of loci encoding ARF activators is constitutively open for transcription. Using a high-throughput yeast one-hybrid (Y1H) approach, we discovered a network of transcriptional regulators ofARFactivator genes fromArabidopsis thaliana. Expression analyses demonstrated that the majority of these regulators act as repressors of ARF transcriptionin planta. Our observations support a scenario where the default configuration of open chromatin enables a network of transcriptional repressors to shape the expression pattern of ARF activators and provide specificity in auxin signalling output throughout development.
Comparison of Analytical Techniques for Thermal Stability Analysis of β-Cyclodextrin for an Ebola Virus Infection Treatment
Authors: Murillo Mayte , Lodder Robert A.
Published: October 2018

Each New Drug Application filed with the Food and Drug Administration (FDA) must include the analytical procedures to ensure the identity, strength, quality, purity, and potency of a drug substance and drug product. The BSN389 drug product (being developed to treat Ebola virus infections) includes beta cyclodextrin. Evidence must be provided that the analytical procedures used in testing BSN389 meet proper standards of accuracy, sensitivity, specificity, and reproducibility and are suitable for their intended purpose. The Bootstrap Error-adjusted Single-Sample Technique (BEST) software was used to compare the quantitative and qualitative power of IR and 1H NMR to differentiate new and partially decomposed samples of beta cyclodextrin, and the best assay will be incorporated into the thermal stability protocol for ВCD.
Lexical Access in Comprehension vs. Production: Spatiotemporal Localization of Semantic Facilitation and Interference
Authors: Dirani Julien , Pylkkänen Liina
Published: October 2018

Humans understand words faster when they are preceded by semantically related words. This facilitation is thought to result from spreading activation between words with similar meanings. Interestingly, in language production, semantic relatedness often has the opposite effect: in object naming for example, a related prior word delays the naming time of the current object. This could be due to competition during conceptual search or later interference at the motor preparation stage. However, no study has systematically compared the facilitory and inhibitory effects and thus their neurobiological relationship is unknown. We contrasted maximally parallel production and comprehension tasks during magnetoencephalography and found that in comprehension (specifically word reading), semantic relatedness modulated activity in the left middle STG at 180-335ms, consistent with prior findings on the spatiotemporal localization of lexical access. In contrast, a semantic interference pattern for the production task (object naming) occurred in a post-lexical time-window at 395-485ms in left posterior insular cortex, consistent with post-lexical motor preparation. Thus, our data show that semantic priming during comprehension and interference during production are not two sides of the same coin but rather they clearly dissociate in space and time, consistent with a lexical account for comprehension and a post-lexical one for production.

Significance statement

The processing of semantically related words has been a central tool for understanding the organization of the mental lexicon. One striking observation is that semantic relatedness tends to be facilitory in comprehension but inhibitory in language production, perhaps because only production involves a conceptual search through semantically related candidates. The neurobiology of this contrast is not understood. Our magnetoencephalography results demonstrate that the facilitory pattern is first observed in classic left temporal lexical access regions at ~200ms, whereas the inhibitory pattern occurs later and in the insular cortex. These findings show that the two effects do not co-localize in space or time and suggest that the inhibitory effects in production stem from a late motor preparation stage.
SpermQ - a simple analysis software to comprehensively study flagellar beating and sperm steering
Authors: Hansen Jan N , Rassmann Sebastian , Jikeli Jan F , Wachten Dagmar
Published: October 2018

Motile cilia, also called flagella, drive cell motility across a broad range of species; some cilia propel prokaryotes and eukaryotic cells like sperm, while cilia on epithelial surfaces create complex fluid patterns e.g. in the brain or lung. For sperm, the picture has emerged that the motile cilium, also called flagellum, is not only a motor, but also a sensor that detects stimuli from the environment, computing the beat pattern according to the sensory input. Thereby, the flagellum of the sperm cell navigates the sperm through a complex environment like the female genital tract. However, we know very little about how environmental signals change the flagellar beat and, thereby, the swimming behaviour of sperm. It has been proposed that distinct signalling domains in the flagellum control the flagellar beat. A detailed analysis has been mainly hampered by the fact that current comprehensive analysis approaches rely on complex microscopy and analysis systems. Thus, knowledge on sperm signalling regulating the flagellar beat is based on custom quantification approaches that are limited to only a few aspects of the flagellar beat, do not resolve the kinetics of the entire flagellum, rely on manual, qualitative descriptions, and are little comparable among each other. Here, we present SpermQ, a ready-to-use and comprehensive analysis software to quantify sperm motility. SpermQ provides a detailed quantification of the flagellar beat based on common time-lapse images acquired by dark-field or epi-fluorescence microscopy, making SpermQ widely applicable. We envision SpermQ becoming a standard tool in flagellar and motile cilia research that allows to readily link studies on individual signalling components in sperm and distinct flagellar beat patterns.
Navigome: Navigating the Human Phenome
Authors: Gaspar Héléna A , Hübel Christopher , Coleman Jonathan R. I. , Hanscombe Ken , Breen Gerome
Published: October 2018

We now have access to a sufficient number of genome-wide association studies (GWAS) to cluster phenotypes into genetic-informed categories and to navigate the “phenome” space of human traits. Using a collection of 465 GWAS, we generated genetic correlations, pathways, gene-wise and tissue-wise associations using MAGMA and S-PrediXcan for 465 human traits. Testing 7267 biological pathways, we found that only 898 were significantly associated with any trait. Similarly, out of ~20,000 tested protein-coding genes, 12,311 genes exhibited an association. Based on the genetic correlations between all traits, we constructed a phenome map using t-distributed stochastic neighbor embedding (t-SNE), where each of the 465 traits can be visualized as an individual point. This map reveals well-defined clusters of traits such as education/high longevity, lower longevity, height, body composition, and depression/anxiety/neuroticism. These clusters are enriched in specific groups of pathways, such as lipid pathways in the lower longevity cluster, and neuronal pathways for body composition or education clusters. The map and all other analyses are available in the Navigome web interface (https://phenviz.navigome.com).
Finding the P3 in the P600: Decoding shared neural mechanisms of responses to syntactic violations and oddball target detection
Authors: Sassenhagen Jona , Fiebach Christian J.
Published: October 2018

The P600 Event-Related Brain Potential, elicited by syntactic violations in sentences, is generally interpreted as indicating language-specific structural/combinatorial processing, with far-reaching implications for models of language. P600 effects are also often taken as evidence for language-like grammars in non-linguistic domains like music or arithmetic. An alternative account, however, interprets the P600 as a P3, a domain-general brain response to salience. Using time-generalized multivariate pattern analysis, we demonstrate that P3 EEG patterns, elicited in a visual Oddball experiment, account for the P600 effect elicited in a syntactic violation experiment: P3 pattern-trained MVPA can classify P600 trials just as well as P600-trained ones. A second study replicates and generalizes this finding, and demonstrates its specificity by comparing it to face- and semantic mismatch-associated EEG responses. These results indicate that P3 and P600 share neural patterns to a substantial degree, calling into question the interpretation of P600 as a language-specific brain response and instead strengthening its association with the P3. More generally, our data indicate that observing P600-like brain responses provides no direct evidence for the presence of language-like grammars, in language or elsewhere.
Population dynamics of underdominance gene drive systems in continuous space
Authors: Champer Jackson , Zhao Joanna , Zhao Joanna , Champer Samuel E. , Liu Jingxian , Messer Philipp W.
Published: October 2018

Underdominance gene drive systems promise a mechanism for rapidly spreading payload alleles through a local population while otherwise remaining confined, unable to spread into neighboring populations due to their frequency-dependent dynamics. Such systems could provide a new tool in the fight against vector-borne diseases by disseminating transgenic payloads through vector populations. If local confinement can indeed be achieved, the decision-making process for the release of such constructs would likely be considerably simpler compared to other gene drive mechanisms such as CRISPR homing drives. So far, the confinement ability of underdominance systems has only been demonstrated in models of panmictic populations linked by migration. How such systems would behave in realistic populations where individuals move over continuous space remains largely unknown. Here, we study several underdominance systems in continuous-space population models and show that their dynamics are drastically altered from those in panmictic populations. Specifically, we find that all underdominance systems we studied can fail to persist in such environments, even after successful local establishment. At the same time, we find that a two-locus two-toxin-antitoxin system can still successfully invade neighboring populations in many scenarios even under weak migration. This suggests that the parameter space for underdominance systems to both establish in a given region and remain confined to that region would likely be highly limited. Overall, these results indicate that spatial context must be considered when assessing strategies for the deployment of underdominance systems.
Hox gene expression in postmetamorphic juveniles of the brachiopod Terebratalia transversa
Authors: Gasiorowski Ludwik , Hejnol Andreas
Published: October 2018

Background: Hox genes encode a family of homeodomain containing transcription factors that are clustered together on chromosomes of many Bilateria. Some bilaterian lineages express these genes during embryogenesis in spatial and/or temporal order according to their arrangement in the cluster, a phenomenon referred to as collinearity. Expression of Hox genes is well studied during embryonic and larval development of numerous species; however, relatively few studies focus on the comparison of pre- and postmetamorphic expression of Hox genes in animals with biphasic life cycle. Recently, the expression of Hox genes was described for embryos and larvae of Terebratalia transversa, a rhynchonelliformean brachiopod, which possesses distinct metamorphosis from planktonic larvae to sessile juvenile. During premetamorphic development, T. transversa does not exhibit spatial collinearity and several of its Hox genes are recruited for the morphogenesis of novel structures. In our study we determined expression of Hox genes in post-metamorphic juveniles of T. transversa in order to examine metamorphosis-related changes of expression patterns and to test if Hox genes are expressed in the spatially collinear way in the postmetamorphic juveniles. Results: Hox genes are expressed in a spatially non-collinear manner in juveniles, generally showing similar patterns as ones observed in competent larvae: genes labial and Post1 are expressed in chaetae-related structures, sex comb reduced in the shell forming epithelium, whereas Lox5 and Lox4 in dorso-posterior epidermis. After metamorphosis expression of genes proboscipedia, Hox3, Deformed and Antennapedia becomes restricted to, respectively, shell musculature, prospective hinge rudiments, and pedicle musculature and epidermis. Conclusions: All developmental stages of T. transversa, including postmetamorphic juveniles, exhibit a spatial non-collinear Hox genes expression with only minor changes observed between pre- and postmetamorphic stages. Our results are concordant with morphological observation that metamorphosis in rhynchonelliformean brachiopods, despite being rapid, is rather gradual. The most drastic changes in Hox genes expression patterns observed during metamorphosis could be explained by the inversion of the mantle lobe, which relocates some of the more posterior larval structures into the anterior edge of the juveniles. Cooption of Hox genes for the morphogenesis of novel structures is even more pronounced in post-metamorphic brachiopods when compared to larvae.
JNK-IN-8, a c-Jun N-terminal kinase inhibitor, improves functional recovery through suppressing neuroinflammation in ischemic stroke
Authors: Tang Hongli , Dai Qinxue , Hong Wandong , Han Kunyuan , Jia Danyun , Mo Yunchang , Lv Ya , Fu Hongxing , Zheng Jianjian , Geng Wujun
Published: October 2018

c-Jun N-terminal kinase (JNK), a mitogen activated protein kinase, is activated in ischemia brain injury and plays an important role in cerebral ischemic injury. Emerging studies demonstrated that JNK-IN-8 (a specific JNK inhibitor) regulates traumatic brain injury through controlling neuronal apoptosis and inflammation. However, the role of JNK-IN-8 in ischemic stroke and the underlying mechanisms of JNK-IN-8 involving neuroprotection remain poorly understood. In the present study, male rats were subjected to tMCAO (transient middle cerebral artery occlusion) followed by treatment with JNK-IN-8, and then the modified improved neurological function score (mNSS), the Foot-fault test and the level of inflammatory cytokines (IL-1β, IL-6 and TNF-α) were assessed. We found that JNK-IN-8-treated rats with MCAO exerted a significant improvement in spatial learning as measured by the improved mNSS, and showed sensorimotor functional recovery as measured by the Foot-fault test. JNK-IN-8 also exerted anti-inflammatory effects as indicated by decreased activation of microglia and the decreased expresson of IL-6, IL-1β and TNF-α. Furthermore, JNK-IN-8 suppressed the activation of JNK and subsequent activation of NF-κB signaling as indicated by the decreased level of phosphorylated JNK (p-JNK) and p65. These data suggest that JNK-IN-8 suppressed neuroinflammation and improved neurological function by inhibiting JNK/NF-κB pathway after ischemic brain injury, thus offering a new target for prevention of ischemic brain injury.
MicroRNA-200c suppresses epithelial-mesenchymal transition of ovarian cancer by targeting cofilin-2
Authors: Yu Xuechen , Zhang Yuanzhen , Zhang Wei , Chen Huijun
Published: October 2018

This study investigated the effects of microRNA-200c (miR-200c) and cofilin-2 (CFL2) in regulating epithelial-mesenchymal transition (EMT) in ovarian cancer. The level of miR-200c was lower in invasive SKOV3 cells than that in non-invasive OVCAR3 cells, whereas CFL2 showed the opposite trend. Bioinformatics analysis and dual-luciferase reporter gene assays indicated that CFL2 was a direct target of miR-200c. Furthermore, SKOV3 and OVCAR3 cells were transfected with miR-200c mimic or inhibitor, pCDH-CFL2 (CFL2 overexpression), or CFL2 shRNA (CFL2 silencing). MiR-200c inhibition and CFL2 overexpression resulted in elevated levels of both CFL2 and vimentin while reducing E-cadherin expression. They also increased ovarian cancer cell invasion and migrationin vitroandin vivoand increased the tumor volumes. Conversely, miR-200c mimic and CFL2 shRNA exerted the opposite effects as those aforementioned. In addition, the effects of pCDH-CFL2 and CFL2 shRNA were reversed by the miR-200c mimic and inhibitor, respectively. This finding suggested that miR-200c could be a potential tumor suppressor by targeting CFL2 in the EMT process.
Acute but not inherited demyelination in mouse models leads to brain tissue stiffness changes
Authors: Eberle Dominic , Fodelianaki Georgia , Kurth Thomas , Jagielska Anna , Möllmert Stephanie , Ulbricht Elke , Wagner Katrin , Taubenberger Anna V. , Träber Nicole , Escolano Joan-Carles , Franklin Robin , Van Vliet Krystyn J. , Guck Jochen
Published: October 2018

The alteration or decrease of axonal myelination is an important hallmark of aging and disease. Demyelinated axons are impaired in their function and degenerate over time. Oligodendrocytes, the cells responsible for myelination of axons, are sensitive to mechanical properties of their environment. Growing evidence indicates that mechanical properties of demyelinating lesions are different from the healthy state and thus have the potential to affect myelinating potential of oligodendrocytes. We performed a high-resolution spatial mapping of the mechanical heterogeneity of demyelinating lesions using Atomic Force Microscope enabled indentation. Our results indicate that the stiffness of specific regions of mouse brain tissue is influenced by age and degree of myelination. Here we specifically demonstrate that acute but not inherited demyelination leads to decreased tissue stiffness, which could lower remyelination potential of oligodendrocytes. We also demonstrate that specific brain regions have unique ranges of stiffness in white and grey matter. Our ex vivo findings may help the design of future in vitro models to mimic mechanical environment of the brain in healthy and disease state. Reported here, mechanical properties of demyelinating lesions may facilitate novel approaches in treating demyelinating diseases such as multiple sclerosis.
Cortico-brainstem mechanisms of biased perceptual decision-making in the context of pain
Authors: Wiech K. , Eippert F. , Vandekerckhove J. , Zaman J. , Placek K. , Tuerlinckx F. , Vlaeyen J.W.S. , Tracey I.
Published: October 2018

Perceptual decision-making is commonly studied using stimuli with different physical properties but of comparable affective value. Here, we investigate neural processes underlying human perceptual decisions in the affectively rich domain of pain using a drift-diffusion model in combination with a probabilistic cueing paradigm. This allowed us to characterize a novel role for the dorsolateral prefrontal cortex (DLPFC), whose anticipatory responses reflecting a decision bias were dependent on the affective value of the stimulus. During intense noxious stimulation, these model-based anticipatory DLPFC responses were linked to an engagement of the periaqueductal gray (PAG), a midbrain region implicated in defensive responses including analgesia. Complementing these findings on biased decision-making, the model parameter reflecting sensory processing predicted subcortical responses (in amygdala and PAG) when expectations were violated. Our findings highlight the importance of taking a broader perspective on perceptual decisions and link decisions about pain with subcortical circuitry implicated in endogenous pain modulation.
Sensitivity and Specificity of Information Criteria
Authors: Dziak John J , Coffman Donna L , Lanza Stephanie T , Li Runze , Jermiin Lars Sommer
Published: October 2018

Information criteria (ICs) based on penalized likelihood, such as Akaike's Information Criterion (AIC), the Bayesian Information Criterion (BIC), and sample-size-adjusted versions of them, are widely used for model selection in health and biological research. However, different criteria sometimes support different models, leading to discussions about which is the most trustworthy. Some researchers and fields of study habitually use one or the other, often without a clearly stated justification. They may not realize that the criteria may disagree. Others try to compare models using multiple criteria but encounter ambiguity when different criteria lead to substantively different answers, leading to questions about which criterion is best. In this paper we present an alternative perspective on these criteria that can help in interpreting their practical implications. Specifically, in some cases the comparison of two models using ICs can be viewed as equivalent to a likelihood ratio test, with the different criteria representing different alpha levels and BIC being a more conservative test than AIC. This perspective may lead to insights about how to interpret the ICs in more complex situations. For example, AIC or BIC could be preferable, depending on the relative importance one assigns to sensitivity versus specificity. Understanding the differences and similarities among the ICs can make it easier to compare their results and to use them to make informed decisions.
Probing the circuits of conscious perception with magnetophosphenes
Authors: Modolo J. , Hassan M. , Ruffini G. , Legros A.
Published: October 2018

Background

Conscious perception is thought to involve the large-scale, coordinated activation of distant brain regions, a process termed ignition in the Global Workspace Theory and integration in Integrated Information Theory, which are two of the major theories of consciousness.

Methods

Here, we provide evidence for this process in humans by combining a magnetically-induced phosphene perception task with electroencephalography. Functional cortical networks were identified and characterized using graph theory to quantify the impact of conscious perception on local (segregation) and distant (integration) processing.

Results

Conscious phosphene perception activated frequency-specific networks, each associated with a specific spatial scale of information processing. Integration increased within an alpha-band functional network, while segregation occurred in the beta band.

Conclusions

These results bring novel evidence for the functional role of distinct brain oscillations and confirm the key role of integration processes for conscious perception in humans.
Catch me if you can: Species interactions and moon illumination effect on mammals of tropical semi-evergreen forest of Manas National Park, Assam, India
Authors: Bhatt U.M. , Habib B. , Sarma H.K. , Lyngdoh S.L.
Published: October 2018

Species interaction plays a vital role in structuring communities by stimulating behavioral responses in temporal niche affecting the sympatric associations and prey-predator relationships. We studied relative abundance indices (RAI) and activity patterns of each species, temporal overlap between sympatric species, and effects of moon cycle on predator-prey relationships, through camera-trapping in tropical semi-evergreen forests of Manas National Park. A total of 35 species were photo-captured with 16214 independent records over 7337 trap nights. Overall, relatively high number of photographs was obtained for large herbivores (11 species, n=13669), and low number of photographs were recorded for large carnivores (five species, n=657). Activity periods were classified into four categories: diurnal (day-time), nocturnal (night-time), crepuscular (twilight), and cathemeral (day and night time) of which 52% records were found in diurnal period followed by 37% in nocturnal phase whereas only 11% photographs during twilight. Small carnivores were strictly nocturnal (leopard cat and civets) or diurnal (yellow-throated marten and mongooses); whereas large carnivores were cathemeral (tiger, leopard, clouded leopard and Asiatic black bear). Analysis of activity patterns throughout the 24-h cycle revealed a high degree of temporal overlap (>60%) among most of the sympatric species; however, differences in the activity peaks were found between most of the species pairs. Moon phase was classified according to the percentage of visible moon surface as new (0-25%), waxing (25-50%), waning (50-75%) and full moon (75-100%). Moon phase did not have any correlation with activity of large carnivore and large prey. The large carnivore followed the feed and starve pattern of cyclic activity. The activity of small carnivore was influenced negatively by moonlight (partial correlationr = −0.221, p<0.01). The result suggests that large carnivores were active non-differentially across moon phases; however, small carnivores showed significantly high activity in darker nights. These patterns indicate that small predators may differ their activity temporally as an anti-predator strategy or otherwise to increase their foraging efficiency.
Axl-mediated activation of TBK1 drives epithelial plasticity in pancreatic cancer
Authors: Cruz Victoria H. , Arner Emily N. , Du Wenting , Bremauntz Alberto E. , Brekken Rolf A.
Published: October 2018

Pancreatic ductal adenocarcinoma (PDA) is characterized by an activating mutation in KRAS, which is critical for the biology of PDA progression. Direct inhibition of KRAS through pharmacological means remains a challenge; however, targeting key KRAS effectors has therapeutic potential. We investigated the contribution of TANK-binding kinase 1 (TBK1), a critical downstream effector of mutant active KRAS, to PDA progression. We report that higher levels of TBK1 mRNA are associated with poorer overall survival in human PDA patients and that TBK1 supports the growth and metastasis of KRAS-mutant PDA by driving an epithelial plasticity program in tumor cells that enhances invasive and metastatic capacity. Further, we identify that the receptor tyrosine kinase Axl induces TBK1 activity in a Ras-RalB-dependent manner. These findings demonstrate that TBK1 is central to an Axl-driven epithelial-mesenchymal transition in KRAS-mutant PDA and suggest that interruption of the Axl-TBK1 signaling cascade above or below KRAS has potential therapeutic efficacy in this recalcitrant disease.
Rapid embryonic cell cycles defer the establishment of heterochromatin by Eggless/SetDB1 inDrosophila
Authors: Seller Charles A. , Cho Chun-Yi , O’Farrell Patrick H.
Published: October 2018

Acquisition of chromatin modifications during embryogenesis distinguishes different regions of an initially naïve genome. In many organisms, repetitive DNA is packaged into constitutive heterochromatin that is marked by di/tri methylation of histone H3K9 and the associated protein HP1a. These modifications enforce the unique epigenetic properties of heterochromatin. However, in the earlyDrosophila melanogasterembryo the heterochromatin lacks these modifications which only appear later when rapid embryonic cell cycles slow down at the Mid-Blastula Transition or MBT. Here we focus on the initial steps restoring heterochromatic modifications in the embryo. We describe the JabbaTrap, a technique for inactivating maternally provided proteins in embryos. Using the JabbaTrap we reveal a major requirement for the methyltransferase Eggless/SetDB1 in the establishment of heterochromatin. In contrast, other methyltransferases contribute minimally. Live-imaging reveals that endogenous Eggless gradually accumulates on chromatin in interphase, but then dissociates in mitosis and its accumulation must restart in the next cell cycle. Cell cycle slowing as the embryo approaches the MBT permits increasing accumulation and action of Eggless at its targets. Experimental manipulation of interphase duration shows that cell cycle speed regulates Eggless. We propose that developmental slowing of the cell cycle times embryonic heterochromatin formation.
Triggering the emergence of digital ecosystems: the role of mobile and video games in emerging economies
Authors: Simon Jean Paul
Published: October 2018

Purpose

This paper aims to shed some light on the role of video games within the media industry and IT sector, on its contribution to the production and distribution of digital content in emerging economies. It offers a case study on the role of mobile devices as a factor of transformation and shows how under changing socio–economic conditions, the transformations enabled the creation of digital ecosystems and innovative business models.

Design/methodology/approach

The paper is based on desk research, a review of literature and trade press and comments from experts and industry players.

Findings

The paper argues that as the internet is going mobile, driven by data – mostly video – the new mobile platforms are becoming the key for the distribution of content and mobile games. Whether it is the history of browser games in China, mobile games in India or PC games in Russia, each national gaming industry has required a unique strategy for making money, building on some prominent cultural factors and adapting to the local economic conditions. The paper reveals that video games are now clearly a vital part of digital content production in these countries, while stressing upon the role of public policies.

Research limitations/implications

The paper relies mostly on industry and consultancy data, as in such a fast-changing environment official data even when accessible are in most cases too old to remain relevant to identify the trends and the fast changing stakes. This calls for some caution about the data. Therefore, the data used should be treated as just signals of potential trends, sufficient to provide an appropriate overview of the evolution of the global mobile ecosystem.

Practical implications

This paper shows that the video games industry can serve as a pivot for the ICT industry. Besides, this prompts upstream and downstream industries of the entire digital entertainment market to thrive.

Social implications

The paper shows that companies from emerging markets companies have been betting on a combination of factors: the development of the economies, the growth of the mobile market, emerging middle-classes and young customers. It provides a growth model that appears to be close to a “regular” industrial growth model.

Originality/value

Although there is a growing academic literature on the video games industry, few research have been devoted to specific issues of emerging economies and to the role of video games within the media industry and IT sector.
Talent management in higher education: is turnover relevant?
Authors: Gandy Rob , Harrison Patricia , Gold Jeff
Published: October 2018

Purpose

Institution-wide staff turnover in universities might be considered “satisfactory”, but can mask wide counterbalancing patterns between departments and different staff. This paper aims to explore the benefits of detailed turnover analysis in managing talent in the complex changing landscape of Higher Education in the UK.

Design/methodology/approach

Staff turnover was analysed for both new recruits and staff leaving, as well as net turnover. The inverted Nomogramma di Gandy highlighted overall patterns and outliers. Staff characteristics examined included age, gender, staff type and contractual status.

Findings

There were (wide) variations in staff turnover for age, gender and type of contract, with particularly high turnover for research staff (influenced by the use of fixed-term contracts). This disproportionately affected younger staff, who are more likely than their elders to seek employment elsewhere, but might stay if there are career opportunities and development. Practical processes are suggested to improve intelligence that enables the best talent to be identified and retained, support a life-span perspective and inform emerging issues such as gender pay differentials.

Originality/value

Given the increasing complexity of managing talent in universities, with their predominantly knowledge-type employees, the research serves to highlight that high localized staff turnover can adversely impact on a university’s research capacity, which in turn presents risks to the achievement of its strategic aims and objectives. Therefore, detailed scrutiny of staff turnover dynamics can pinpoint where recruitment and retention policies and practice require focus.
Unfair dismissal in the Mauritius context: a comparative study
Authors: Beebeejaun Ambareen
Published: October 2018

Purpose

The purpose of this study is to critically analyse the concept of unfair dismissal and to assess the extent to which the Employment Rights Act 2008 is affording protection to employees in Mauritius. The purpose of this study is to also demonstrate that as employees form an integral part of their workplace, their employment cannot be terminated without substantive and procedural fairness. The paper will provide some recommendations to cater for loopholes in existing Mauritius employment legislations.

Design/Methodology/Approach

To critically examine the topic, the black letter approach is adopted to detail legislations and judgments of courts on the subject matter. A comparative analysis with some other jurisdictions’ employment legislations is also carried out to define, explain and examine the concepts of dismissal, substantive causes such as misconduct and procedural fairness.

Findings

From the methodologies used, it is found that a substantial reason is not sufficient to conclude whether a dismissal is fair. The law of unfair dismissal has introduced some procedural safeguards to protect the employee from being unfairly and unjustifiably dismissed. The procedural requirements act as guidelines to employers and if they are not followed properly, the dismissal will be unfair. Unfair dismissal needs to be accompanied by remedies from employers, and monetary compensation has been found to be the most appropriate remedy.

Originality/Value

This paper is amongst the first research work conducted in Mauritius that compares the law of unfair dismissal and its implications with the laws of England and South Africa. The study is carried out with a view to provide practical recommendations in this area of employment law to the relevant stakeholders concerned.