bluuebunny/crossref_metadata_2025 huggingface dataset:
Supplementary Figure 1 from A Live-Attenuated Listeria Vaccine (ANZ-100) and a Live-Attenuated Listeria Vaccine Expressing Mesothelin (CRS-207) for Advanced Cancers: Phase I Studies of Safety and Immune Induction
Authors: Le Dung T. , Brockstedt Dirk G. , Nir-Paz Ran , Hampl Johannes , Mathur Shruti , Nemunaitis John , Sterman Daniel H. , Hassan Raffit , Lutz Eric , Moyer Bentley , Giedlin Martin , Louis Jana-Lynn , Sugar Elizabeth A. , Pons Alice , Cox Andrea L. , Levine Jordana , Murphy Aimee Luck , Illei Peter , Dubensky Thomas W. , Eiden Joseph E. , Jaffee Elizabeth M. , Laheru Daniel A.
Published: April 2023

PDF file - 56K
Supplementary Table 1 from Immune Thrombocytopenia in Patients with Chronic Lymphocytic Leukemia Is Associated with Stereotyped B-cell Receptors
Authors: Visco Carlo , Maura Francesco , Tuana Giacomo , Agnelli Luca , Lionetti Marta , Fabris Sonia , Novella Elisabetta , Giaretta Ilaria , Reda Gianluigi , Barcellini Wilma , Baldini Luca , Neri Antonino , Rodeghiero Francesco , Cortelezzi Agostino
Published: April 2023

PDF file - 73K
Supplementary Figure 1 from Adoptive Transfer of Autologous Natural Killer Cells Leads to High Levels of Circulating Natural Killer Cells but Does Not Mediate Tumor Regression
Authors: Parkhurst Maria R. , Riley John P. , Dudley Mark E. , Rosenberg Steven A.
Published: April 2023

PDF file - 47K
Supplementary Table 1 from Cytokine BAFF Gene Variation Is Associated with Survival of Patients with T-cell Lymphomas
Authors: Zhai Kan , Tian Xiaobo , Wu Chen , Lu Ning , Chang Jiang , Huang Liming , Zhang Tongwen , Zhou Yuling , Qiao Yan , Yu Dianke , Tan Wen , Chen Jieping , Lin Dongxin
Published: April 2023

PDF file - 72K
Supplementary Figure 2 from Relationship between Quantitative GRB7 RNA Expression and Recurrence after Adjuvant Anthracycline Chemotherapy in Triple-Negative Breast Cancer
Authors: Sparano Joseph A. , Goldstein Lori J. , Childs Barrett H. , Shak Steven , Brassard Diana , Badve Sunil , Baehner Frederick L. , Bugarini Roberto , Rowley Steve , Perez Edith A. , Shulman Lawrence N. , Martino Silvana , Davidson Nancy E. , Kenny Paraic A. , Sledge George W. , Gray Robert
Published: April 2023

PDF file - 72K, Box plots (with center line at the median and box edges at the quartiles) showing the raw distribution of GRB7, ERBB2, KRT19 and PHB expression for the triple negative (TN) subset, hormone receptor negative (HR-), HER2-positive (HER2+) subset and the combined (over HR status) HER2+ subset, as defined by IHC. Differences between TN and the other groups are highly significant (p<0.001) except for PHB (TN vs. HR-, HER2+ p=NS, TN vs. Combined HER2+ p=0.005, Wilcoxon rank sum tests).
Supplementary Materials and Methods from MiR-1 Downregulation Cooperates with MACC1 in Promoting MET Overexpression in Human Colon Cancer
Authors: Migliore Cristina , Martin Valentina , Leoni Vera P. , Restivo Angelo , Atzori Luigi , Petrelli Annalisa , Isella Claudio , Zorcolo Luigi , Sarotto Ivana , Casula Giuseppe , Comoglio Paolo M. , Columbano Amedeo , Giordano Silvia
Published: April 2023

PDF file - 78K
Supplementary Figure 2 from Population Pharmacokinetics of Busulfan in Children: Increased Evidence for Body Surface Area and Allometric Body Weight Dosing of Busulfan in Children
Authors: Trame Mirjam N. , Bergstrand Martin , Karlsson Mats O. , Boos Joachim , Hempel Georg
Published: April 2023

PDF file - 139KB, prediction corrected Visual Predictive Checks pcVPC; (A) development models; (B) development models with IV busulfan data; (C) development models with oral busulfan data; (D) evaluation dataset; pcVPCs show the median solid black line, 5th and 95th percentiles dashed black lines for the observed data with 95% confidence intervals for the median dark grey field, 5% and 95% percentiles light grey fields based on simulations.
Supplementary Figure 7 from MiR-1 Downregulation Cooperates with MACC1 in Promoting MET Overexpression in Human Colon Cancer
Authors: Migliore Cristina , Martin Valentina , Leoni Vera P. , Restivo Angelo , Atzori Luigi , Petrelli Annalisa , Isella Claudio , Zorcolo Luigi , Sarotto Ivana , Casula Giuseppe , Comoglio Paolo M. , Columbano Amedeo , Giordano Silvia
Published: April 2023

PDF file - 279K
Supplementary Figure Legends 1-2 from Phase I, Dose-Escalation Trial of the Oral Cyclin-Dependent Kinase 4/6 Inhibitor PD 0332991, Administered Using a 21-Day Schedule in Patients with Advanced Cancer
Authors: Flaherty Keith T. , LoRusso Patricia M. , DeMichele Angela , Abramson Vandana G. , Courtney Rachel , Randolph Sophia S. , Shaik M. Naveed , Wilner Keith D. , O'Dwyer Peter J. , Schwartz Gary K.
Published: April 2023

PDF file - 48K
Supplementary Table from Phase II Trial of Dasatinib in Patients with Metastatic Breast Cancer Using Real-Time Pharmacodynamic Tissue Biomarkers of Src Inhibition to Escalate Dosing
Authors: Herold Christina I. , Chadaram Vijaya , Peterson Bercedis L. , Marcom P. Kelly , Hopkins Judith , Kimmick Gretchen G. , Favaro Justin , Hamilton Erika , Welch Renee A. , Bacus Sarah , Blackwell Kimberly L.
Published: April 2023

XLS file - 16K, Pulmonary and pleural effusions, pneumonitis.
Supplementary Figure 1 from MiR-1 Downregulation Cooperates with MACC1 in Promoting MET Overexpression in Human Colon Cancer
Authors: Migliore Cristina , Martin Valentina , Leoni Vera P. , Restivo Angelo , Atzori Luigi , Petrelli Annalisa , Isella Claudio , Zorcolo Luigi , Sarotto Ivana , Casula Giuseppe , Comoglio Paolo M. , Columbano Amedeo , Giordano Silvia
Published: April 2023

PDF file - 119K
Supplementary Table 1 from PTEN Deletion in Prostate Cancer Cells Does Not Associate with Loss of RAD51 Function: Implications for Radiotherapy and Chemotherapy
Authors: Fraser Michael , Zhao Helen , Luoto Kaisa R. , Lundin Cecilia , Coackley Carla , Chan Norman , Joshua Anthony M. , Bismar Tarek A. , Evans Andrew , Helleday Thomas , Bristow Robert G.
Published: April 2023

XLS file - 38K
Supplementary Table 6 from Genome-Wide CpG Island Profiling of Intraductal Papillary Mucinous Neoplasms of the Pancreas
Authors: Hong Seung-Mo , Omura Noriyuki , Vincent Audrey , Li Ang , Knight Spencer , Yu Jun , Hruban Ralph H. , Goggins Michael
Published: April 2023

XLS file - 19K
Supplementary Figure 5 from Genome-Wide CpG Island Profiling of Intraductal Papillary Mucinous Neoplasms of the Pancreas
Authors: Hong Seung-Mo , Omura Noriyuki , Vincent Audrey , Li Ang , Knight Spencer , Yu Jun , Hruban Ralph H. , Goggins Michael
Published: April 2023

PDF file - 942K
Supplementary Figure 3 from Membranous Expression of Ectodomain Isoforms of the Epidermal Growth Factor Receptor Predicts Outcome after Chemoradiotherapy of Lymph Node–Negative Cervical Cancer
Authors: Halle Cathinka , Lando Malin , Svendsrud Debbie Hege , Clancy Trevor , Holden Marit , Sundfør Kolbein , Kristensen Gunnar B. , Holm Ruth , Lyng Heidi
Published: April 2023

PDF file - 69K
Supplementary Figure 4 from To DNA or not to DNA? That Is the Question, When It Comes to Molecular Subtyping for the Clinic!
Authors: Smeets Serge J. , Harjes Ulrike , van Wieringen Wessel N. , Sie Daoud , Brakenhoff Ruud H. , Meijer Gerrit A. , Ylstra Bauke
Published: April 2023

PDF file - 3.65 MB
Supplementary Figure 2 from To DNA or not to DNA? That Is the Question, When It Comes to Molecular Subtyping for the Clinic!
Authors: Smeets Serge J. , Harjes Ulrike , van Wieringen Wessel N. , Sie Daoud , Brakenhoff Ruud H. , Meijer Gerrit A. , Ylstra Bauke
Published: April 2023

PDF file - 2.45 MB
Figure 4 from Quantitative Cell-Free DNA, KRAS, and BRAF Mutations in Plasma from Patients with Metastatic Colorectal Cancer during Treatment with Cetuximab and Irinotecan
Authors: Spindler Karen-Lise Garm , Pallisgaard Niels , Vogelius Ivan , Jakobsen Anders
Published: April 2023

PDF file - 277K
Supplementary Table 1 from Activation of β-Catenin Signaling in Androgen Receptor–Negative Prostate Cancer Cells
Authors: Wan Xinhai , Liu Jie , Lu Jing-Fang , Tzelepi Vassiliki , Yang Jun , Starbuck Michael W. , Diao Lixia , Wang Jing , Efstathiou Eleni , Vazquez Elba S. , Troncoso Patricia , Maity Sankar N. , Navone Nora M.
Published: April 2023

PDF file - 48K
Supplementary Figure 2A from Microarray Analysis of Colorectal Cancer Stromal Tissue Reveals Upregulation of Two Oncogenic miRNA Clusters
Authors: Nishida Naohiro , Nagahara Makoto , Sato Tetsuya , Mimori Koshi , Sudo Tomoya , Tanaka Fumiaki , Shibata Kohei , Ishii Hideshi , Sugihara Kenichi , Doki Yuichiro , Mori Masaki
Published: April 2023

PDF file, 69KB, Two-dimensional hierarchical cluster analysis of upregulated miRNAs and samples was performed to generate a heatmap. The distance between every pair of miRNAs was calculated as 1.0 - (Pearson's correlation coefficient in expression signal between these two miRNAs). The heatmaps indicate a high (red) or low (green) level of expression. The Ward's linkage algorithm was used for cluster analysis. A: Results of unsupervised hierarchical clustering of four normal and thirteen cancer stromal samples based on expression of miRNAs. Each column represents a sample and each row a probe set.
Supplementary Figure 1 from BRAF(V600) Inhibitor GSK2118436 Targeted Inhibition of Mutant BRAF in Cancer Patients Does Not Impair Overall Immune Competency
Authors: Hong David S. , Vence Luis , Falchook Gerald , Radvanyi Laszlo G. , Liu Chengwen , Goodman Vicki , Legos Jeffery J. , Blackman Sam , Scarmadio Antonio , Kurzrock Razelle , Lizee Gregory , Hwu Patrick
Published: April 2023

PDF file - 177K
Supplementary Figures 1-3 from Gene Set Enrichment Analysis Unveils the Mechanism for the Phosphodiesterase 4B Control of Glucocorticoid Response in B-cell Lymphoma
Authors: Kim Sang-Woo , Rai Deepak , Aguiar Ricardo C.T.
Published: April 2023

PDF file - 374K
Supplementary Table 2 from Modulation of NOXA and MCL-1 as a Strategy for Sensitizing Melanoma Cells to the BH3-Mimetic ABT-737
Authors: Lucas Keryn M. , Mohana-Kumaran Nethia , Lau Diana , Zhang Xu Dong , Hersey Peter , Huang David C. , Weninger Wolfgang , Haass Nikolas K. , Allen John D.
Published: April 2023

PDF file - 75K, ffects of NOXA knockdown on sensitization to ABT-737 by flavopiridol.
Supplementary Figure 2 from Tipping the Noxa/Mcl-1 Balance Overcomes ABT-737 Resistance in Chronic Lymphocytic Leukemia
Authors: Tromp Jacqueline M. , Geest Christian R. , Breij Esther C.W. , Elias Judith A. , van Laar Jacoline , Luijks Dieuwertje M. , Kater Arnon P. , Beaumont Tim , van Oers Marinus H.J. , Eldering Eric
Published: April 2023

PDF file - 620K, CLL cells were stimulated with CD40L for the indicated time (24, 48 and 72 hrs). Western blots of Bfl-1 were quantified with Odyssey software in both ABT-737 sensitive (n=4) and ABT-737 resistant (n=4) CD40-stimulated CLL cells. Bars represent the mean � SEM.
Supplementary Figure 2 from Modulation of NOXA and MCL-1 as a Strategy for Sensitizing Melanoma Cells to the BH3-Mimetic ABT-737
Authors: Lucas Keryn M. , Mohana-Kumaran Nethia , Lau Diana , Zhang Xu Dong , Hersey Peter , Huang David C. , Weninger Wolfgang , Haass Nikolas K. , Allen John D.
Published: April 2023

PDF file - 75K, Expanded immunoblot analysis.
Supplementary Data from Evaluation of KRAS Mutations, Angiogenic Biomarkers, and DCE-MRI in Patients with Advanced Non–Small-Cell Lung Cancer Receiving Sorafenib
Authors: Kelly Ronan J. , Rajan Arun , Force Jeremy , Lopez-Chavez Ariel , Keen Corrine , Cao Liang , Yu Yunkai , Choyke Peter , Turkbey Baris , Raffeld Mark , Xi Liqiang , Steinberg Seth M. , Wright John J. , Kummar Shivaani , Gutierrez Martin , Giaccone Giuseppe
Published: April 2023

Supplementary Figures S1-S2; Supplementary Tables S1-S3.
Supplementary Figure 3 from Peptides Mimicking the Unique ARTS-XIAP Binding Site Promote Apoptotic Cell Death in Cultured Cancer Cells
Authors: Edison Natalia , Reingewertz Tali-Haviv , Gottfried Yossi , Lev Tali , Zuri Dotan , Maniv Inbal , Carp Marie-Jeanne , Shalev Gil , Friedler Assaf , Larisch Sarit
Published: April 2023

PDF file - 1.5MB
Supplementary Tables 1-9, 12-14 from IDH Mutation and Neuroglial Developmental Features Define Clinically Distinct Subclasses of Lower Grade Diffuse Astrocytic Glioma
Authors: Gorovets Daniel , Kannan Kasthuri , Shen Ronglai , Kastenhuber Edward R. , Islamdoust Nasrin , Campos Carl , Pentsova Elena , Heguy Adriana , Jhanwar Suresh C. , Mellinghoff Ingo K. , Chan Timothy A. , Huse Jason T.
Published: April 2023

XLSX file, 112KB, S1:Gene list of refined signature designating expression subclasses in lower-grade diffuse astrocytic gliomas from MSKCC sample set. ROC scores are shown. S2: Modified MSKCC sample set gene list used to analyze REMBRANDT expression data. ROC scores are shown. S3: Gene list of unified expression signature developed from subclass assignments in both MSKCC and REMBRANDT array data. Summed ROC scores are shown. S4: Ingenuity analysis results for canonical pathways using NB subclass signature genes. S5: Ingenuity analysis results for functional annotations using NB subclass signature genes. S6: Ingenuity analysis results for canonical pathways using EPL subclass signature genes. S7: Ingenuity analysis results for functional annotations using EPL subclass signature genes. S8: Ingenuity analysis results for canonical pathways using PG subclass signature genes. S9: Ingenuity analysis results for functional annotations using PG subclass signature genes. S14: Statistically significant copy number alterations as determined by the GISTIC algorithm for REMBRANDT diffuse astrocytic gliomas of PG subclass.
Supplementary Figure 1 from Peptides Mimicking the Unique ARTS-XIAP Binding Site Promote Apoptotic Cell Death in Cultured Cancer Cells
Authors: Edison Natalia , Reingewertz Tali-Haviv , Gottfried Yossi , Lev Tali , Zuri Dotan , Maniv Inbal , Carp Marie-Jeanne , Shalev Gil , Friedler Assaf , Larisch Sarit
Published: April 2023

PDF file - 546K
Supplementary Figures 1 - 3, Tables 1 - 9 from Cytokeratin-19 and Mammaglobin Gene Expression in Circulating Tumor Cells from Metastatic Breast Cancer Patients Enrolled in North Central Cancer Treatment Group Trials, N0234/336/436/437
Authors: Reinholz Monica M. , Kitzmann Kathleen A. , Tenner Kathleen , Hillman David , Dueck Amylou C. , Hobday Timothy J. , Northfelt Donald W. , Moreno-Aspitia Alvaro , Roy Vivek , LaPlant Betsy , Allred Jake B. , Stella Philip J. , Lingle Wilma L. , Perez Edith A.
Published: April 2023

PDF file - 180KB
Supplementary Methods, Figure Legends, and Table Legends from IDH Mutation and Neuroglial Developmental Features Define Clinically Distinct Subclasses of Lower Grade Diffuse Astrocytic Glioma
Authors: Gorovets Daniel , Kannan Kasthuri , Shen Ronglai , Kastenhuber Edward R. , Islamdoust Nasrin , Campos Carl , Pentsova Elena , Heguy Adriana , Jhanwar Suresh C. , Mellinghoff Ingo K. , Chan Timothy A. , Huse Jason T.
Published: April 2023

PDF file, 95KB.
Supplementary Figure 5 from IDH Mutation and Neuroglial Developmental Features Define Clinically Distinct Subclasses of Lower Grade Diffuse Astrocytic Glioma
Authors: Gorovets Daniel , Kannan Kasthuri , Shen Ronglai , Kastenhuber Edward R. , Islamdoust Nasrin , Campos Carl , Pentsova Elena , Heguy Adriana , Jhanwar Suresh C. , Mellinghoff Ingo K. , Chan Timothy A. , Huse Jason T.
Published: April 2023

PDF file, 116KB, Kaplan-Meier curves showing overall survival for REMBRANDT diffuse astrocytic gliomas stratified by WHO grade. Sample sizes are in parentheses. P value shown.
Supplementary Figure 4 from IDH Mutation and Neuroglial Developmental Features Define Clinically Distinct Subclasses of Lower Grade Diffuse Astrocytic Glioma
Authors: Gorovets Daniel , Kannan Kasthuri , Shen Ronglai , Kastenhuber Edward R. , Islamdoust Nasrin , Campos Carl , Pentsova Elena , Heguy Adriana , Jhanwar Suresh C. , Mellinghoff Ingo K. , Chan Timothy A. , Huse Jason T.
Published: April 2023

PDF file, 109KB, Positive silhouette width for initial clusters of diffuse astrocytic glioma determined core subclass members, which were then used for downstream SAM and ROC analysis.
Supplementary Figure 3 from IDH Mutation and Neuroglial Developmental Features Define Clinically Distinct Subclasses of Lower Grade Diffuse Astrocytic Glioma
Authors: Gorovets Daniel , Kannan Kasthuri , Shen Ronglai , Kastenhuber Edward R. , Islamdoust Nasrin , Campos Carl , Pentsova Elena , Heguy Adriana , Jhanwar Suresh C. , Mellinghoff Ingo K. , Chan Timothy A. , Huse Jason T.
Published: April 2023

PDF file, 129KB, Consensus k-means clustering demonstrated 3 robust subclasses of lower-grade diffuse astrocytic glioma. Cluster stability for filtered sets of 200, 250, 300, and 350 genes was maximal at k=3 as measured by the Δ(Gini) (A-D).
Secondary Lymphedema Questionaire from Connexin 47 Mutations Increase Risk for Secondary Lymphedema Following Breast Cancer Treatment
Authors: Finegold David N. , Baty Catherine J. , Knickelbein Kelly Z. , Perschke Shelley , Noon Sarah E. , Campbell Diana , Karlsson Jenny M. , Huang Diana , Kimak Mark A. , Lawrence Elizabeth C. , Feingold Eleanor , Meriney Stephen D. , Brufsky Adam M. , Ferrell Robert E.
Published: April 2023

PDF file - 100K
Supplementary Tables 1-12 from Microarray Analysis Verifies Two Distinct Phenotypes of Glioblastomas Resistant to Antiangiogenic Therapy
Authors: DeLay Michael , Jahangiri Arman , Carbonell W. Shawn , Hu Yu-Long , Tsao Sean , Tom Maxwell Wing , Paquette Jesse , Tokuyasu Taku A. , Aghi Manish K.
Published: April 2023

XLSX file, 1707KB, This is a single excel file with 12 internal sections marked by tabs at the bottom of the file. These 12 tabs represent Supplementary Tables S1-S12, most of which is data generated from our microarray analysis.
Supplementary Table 4D from Global Methylation Profiling for Risk Prediction of Prostate Cancer
Authors: Mahapatra Saswati , Klee Eric W. , Young Charles Y.F. , Sun Zhifu , Jimenez Rafael E. , Klee George G. , Tindall Donald J. , Donkena Krishna Vanaja
Published: April 2023

PDF file - 267K, Significance of methylation in prostate cancer tissue samples from 4 microarrays with the batch effect
Supplementary Table 1 from Phase I Study of the Combination of Sorafenib and Temsirolimus in Patients with Metastatic Melanoma
Authors: Davies Michael A. , Fox Patricia S. , Papadopoulos Nicholas E. , Bedikian Agop Y. , Hwu Wen-Jen , Lazar Alexander J. , Prieto Victor G. , Culotta Kirk S. , Madden Timothy L. , Xu Quanyun , Huang Sha , Deng Wanleng , Ng Chaan S. , Gupta Sanjay , Liu Wenbin , Dancey Janet E. , Wright John J. , Bassett Roland L. , Hwu Patrick , Kim Kevin B.
Published: April 2023

PDF file - 58K
Supplementary Table 4B from Global Methylation Profiling for Risk Prediction of Prostate Cancer
Authors: Mahapatra Saswati , Klee Eric W. , Young Charles Y.F. , Sun Zhifu , Jimenez Rafael E. , Klee George G. , Tindall Donald J. , Donkena Krishna Vanaja
Published: April 2023

PDF file - 273K, Significance of methylation in prostate cancer tissue samples from 4 microarrays with the batch effect
Supplementary Table 3 from Global Methylation Profiling for Risk Prediction of Prostate Cancer
Authors: Mahapatra Saswati , Klee Eric W. , Young Charles Y.F. , Sun Zhifu , Jimenez Rafael E. , Klee George G. , Tindall Donald J. , Donkena Krishna Vanaja
Published: April 2023

XLS file - 43K, Most significantly methylated genes associated with prostate cancer recurrence from the Cox multivariate model
Supplementary Table 2 from Global Methylation Profiling for Risk Prediction of Prostate Cancer
Authors: Mahapatra Saswati , Klee Eric W. , Young Charles Y.F. , Sun Zhifu , Jimenez Rafael E. , Klee George G. , Tindall Donald J. , Donkena Krishna Vanaja
Published: April 2023

XLS file - 34K, Most significantly methylated genes associated with prostate cancer recurrence from the Cox univariate analysis
Supplementary Table 1D from Global Methylation Profiling for Risk Prediction of Prostate Cancer
Authors: Mahapatra Saswati , Klee Eric W. , Young Charles Y.F. , Sun Zhifu , Jimenez Rafael E. , Klee George G. , Tindall Donald J. , Donkena Krishna Vanaja
Published: April 2023

PDF file - 240K, Significantly methylated genes in prostate cancer tissues from the binary group comparisons
Supplementary Table 1A from Global Methylation Profiling for Risk Prediction of Prostate Cancer
Authors: Mahapatra Saswati , Klee Eric W. , Young Charles Y.F. , Sun Zhifu , Jimenez Rafael E. , Klee George G. , Tindall Donald J. , Donkena Krishna Vanaja
Published: April 2023

PDF file - 419K, Significantly methylated genes in prostate cancer tissues from the binary group comparisons
Supplementary Figure Legends 1-6 from Histone Deacetylase Inhibitors Induce Growth Arrest and Differentiation in Uveal Melanoma
Authors: Landreville Solange , Agapova Olga A. , Matatall Katie A. , Kneass Zachary T. , Onken Michael D. , Lee Ryan S. , Bowcock Anne M. , Harbour J. William
Published: April 2023

PDF file - 65K
Supplementary Figure 6 from Histone Deacetylase Inhibitors Induce Growth Arrest and Differentiation in Uveal Melanoma
Authors: Landreville Solange , Agapova Olga A. , Matatall Katie A. , Kneass Zachary T. , Onken Michael D. , Lee Ryan S. , Bowcock Anne M. , Harbour J. William
Published: April 2023

PDF file - 1.9MB
Supplementary Figure 4 from Histone Deacetylase Inhibitors Induce Growth Arrest and Differentiation in Uveal Melanoma
Authors: Landreville Solange , Agapova Olga A. , Matatall Katie A. , Kneass Zachary T. , Onken Michael D. , Lee Ryan S. , Bowcock Anne M. , Harbour J. William
Published: April 2023

PDF file - 572K
Supplementary Methods and Figure Legends from Expression of NLRR3 Orphan Receptor Gene Is Negatively Regulated by MYCN and Miz-1, and Its Downregulation Is Associated with Unfavorable Outcome in Neuroblastoma
Authors: Akter Jesmin , Takatori Atsushi , Hossain Md. Shamim , Ozaki Toshinori , Nakazawa Atsuko , Ohira Miki , Suenaga Yusuke , Nakagawara Akira
Published: April 2023

PDF file - 96KB
Supplementary Figure 2 from Histone Deacetylase Inhibitors Induce Growth Arrest and Differentiation in Uveal Melanoma
Authors: Landreville Solange , Agapova Olga A. , Matatall Katie A. , Kneass Zachary T. , Onken Michael D. , Lee Ryan S. , Bowcock Anne M. , Harbour J. William
Published: April 2023

PDf file - 8.7MB
Supplementary Figure 3 from Expression of NLRR3 Orphan Receptor Gene Is Negatively Regulated by MYCN and Miz-1, and Its Downregulation Is Associated with Unfavorable Outcome in Neuroblastoma
Authors: Akter Jesmin , Takatori Atsushi , Hossain Md. Shamim , Ozaki Toshinori , Nakazawa Atsuko , Ohira Miki , Suenaga Yusuke , Nakagawara Akira
Published: April 2023

PDF file - 29KB
CCR Translation for This Article from Histone Deacetylase Inhibitors Induce Growth Arrest and Differentiation in Uveal Melanoma
Authors: Landreville Solange , Agapova Olga A. , Matatall Katie A. , Kneass Zachary T. , Onken Michael D. , Lee Ryan S. , Bowcock Anne M. , Harbour J. William
Published: April 2023

CCR Translation for This Article from Histone Deacetylase Inhibitors Induce Growth Arrest and Differentiation in Uveal Melanoma
Supplementary Figure 1 from Expression of NLRR3 Orphan Receptor Gene Is Negatively Regulated by MYCN and Miz-1, and Its Downregulation Is Associated with Unfavorable Outcome in Neuroblastoma
Authors: Akter Jesmin , Takatori Atsushi , Hossain Md. Shamim , Ozaki Toshinori , Nakazawa Atsuko , Ohira Miki , Suenaga Yusuke , Nakagawara Akira
Published: April 2023

PDF file - 47KB
Supplementary Methods from Nutlin-3 Downregulates the Expression of the Oncogene TCL1 in Primary B Chronic Lymphocytic Leukemic Cells
Authors: Voltan Rebecca , di Iasio Maria Grazia , Bosco Raffaella , Valeri Nicola , Pekarski Yuri , Tiribelli Mario , Secchiero Paola , Zauli Giorgio
Published: April 2023

PDF file - 84K
Supplementary Figure 7 from Akt Inhibitors MK-2206 and Nelfinavir Overcome mTOR Inhibitor Resistance in Diffuse Large B-cell Lymphoma
Authors: Petrich Adam M. , Leshchenko Violetta , Kuo Pei-Yu , Xia Bing , Thirukonda Venu K. , Ulahannan Netha , Gordon Shanisha , Fazzari Melissa J. , Ye B. Hilda , Sparano Joseph A. , Parekh Samir
Published: April 2023

PDF file - 24K, The cytotoxic agent Doxorubicin synergizes with Rapamycin, MK-2206 and their combination, in DLBCL cell lines. A-B. 106 cells/ml of two Rapamycin-sensitive cell lines (SUDHL-6 and WSU-NHL) and two Rapamycin-resistant cell lines (SUDHL-4 and OCI-Ly19) DLBCL cells were treated with single-agent Rapamycin, MK-2206, and Doxorubicin; the combination of Rapamycin and Doxorubicin; and the combination of MK-2206 and Doxorubicin, each for 48h. Viability was assessed by a ﬂuorometric resazurin reduction assay. Each experiment was performed in octuplicate, and repeated once, with representative results shown. Shown here are normalized isobolograms of treatment effects of Rapamycin and Doxorubicin (A), and MK-2206 and Doxorubicin (B), in the Rapamycin-resistant cell line SUDHL-4. Proportion of Doxorubicin IC50 is shown on the X-axis, and proportion of Rapamycin IC50 and MK-2206 IC50, respectively, are shown on the Y-axes. Points at or near the red line are indicative of additive effects of the two agents; those below the line are indicative of synergistic effects. C. Rapamycin-resistant (SUDHL-4 and OCI-Ly19) and Rapamycin-sensitive (SUDHL-6 and WSU-NHL) were treated with the combination of three agents (Rapamycin, MK-2206, and Doxorubicin) for 48h as described above, and viability was assessed. Combination indices (CI) for the treatment effect were calculated using the Chou-Talalay equation (see Methods and Materials), and are shown here. CI Values below 0.8 indicate the presence of synergistic effect.
Supplementary Figure Legends 1-2, Table Legends 1-3 from Regulation of CD20 in Rituximab-Resistant Cell Lines and B-cell Non-Hodgkin Lymphoma
Authors: Tsai Ping-Chiao , Hernandez-Ilizaliturri Francisco J. , Bangia Naveen , Olejniczak Scott H. , Czuczman Myron S.
Published: April 2023

PDF file - 77K
Supplementary Figure 5 from Akt Inhibitors MK-2206 and Nelfinavir Overcome mTOR Inhibitor Resistance in Diffuse Large B-cell Lymphoma
Authors: Petrich Adam M. , Leshchenko Violetta , Kuo Pei-Yu , Xia Bing , Thirukonda Venu K. , Ulahannan Netha , Gordon Shanisha , Fazzari Melissa J. , Ye B. Hilda , Sparano Joseph A. , Parekh Samir
Published: April 2023

PDF file - 26K, Simultaneous inhibition of mTOR and AKT pathways is synergistic in Breast cancer cell lines. A-B. Shown here are normalized isobolograms of treatment effects of Rapamycin and MK-2206, in the above cell lines. Proportion of MK-2206 IC50 is shown on the X-axis, and proportion of Rapamycin IC50 are shown on the Y-axis. Points at or near the red line are indicative of additive effects of the two agents; those below the line are indicative of synergistic effects.
Supplementary Figure 1 from Regulation of CD20 in Rituximab-Resistant Cell Lines and B-cell Non-Hodgkin Lymphoma
Authors: Tsai Ping-Chiao , Hernandez-Ilizaliturri Francisco J. , Bangia Naveen , Olejniczak Scott H. , Czuczman Myron S.
Published: April 2023

PDF file - 146K
Supplementary Figure 4 from Akt Inhibitors MK-2206 and Nelfinavir Overcome mTOR Inhibitor Resistance in Diffuse Large B-cell Lymphoma
Authors: Petrich Adam M. , Leshchenko Violetta , Kuo Pei-Yu , Xia Bing , Thirukonda Venu K. , Ulahannan Netha , Gordon Shanisha , Fazzari Melissa J. , Ye B. Hilda , Sparano Joseph A. , Parekh Samir
Published: April 2023

PDF file - 121K, A-C. The Rapamycin-resistant cell lines OCI-Ly19 (A) and SUDHL-4 (C) and the Rapamycin-sensitive cell line WSU-NHL (B) were treated for 3 hours and 6 hours with Rapamycin, Nelfinavir, and the combination of the two agents, after which cell lysates were prepared and analyzed by Western blot technique. Shown here are results using antibodies against phosphorylated Akt (p-Akt), phospho-S-6 ribosomal protein (p-S6RP), and phosphorylated 4-EBP-1 (p-4EBP-1).
Supplementary Figure 3 from Akt Inhibitors MK-2206 and Nelfinavir Overcome mTOR Inhibitor Resistance in Diffuse Large B-cell Lymphoma
Authors: Petrich Adam M. , Leshchenko Violetta , Kuo Pei-Yu , Xia Bing , Thirukonda Venu K. , Ulahannan Netha , Gordon Shanisha , Fazzari Melissa J. , Ye B. Hilda , Sparano Joseph A. , Parekh Samir
Published: April 2023

PDF file - 85K, A. Rapamycin-resistant cell line SUDHL-4 was treated for 6 hours with Rapamycin at 25 nM, MK-2206 at 300 nM, and the combination, after which cell lysates were prepared and analyzed by Western blot technique. Each experiment was repeated, with representative results provided. Shown here are results from analysis of cleaved caspase-3 and cleaved PARP. B-C. The Rapamycin-resistant cell line OCI-Ly19 (B) and the Rapamycin-sensitive cell line WSU-NHL (C) were treated for 3 and 6 hours with Rapamycin, MK-2206, and the combination, after which cell lysates were prepared and analyzed by Western blot technique. Shown here are results using antibodies against phosphorylated Akt (p-Akt), phospho-S-6 ribosomal protein (p-S6RP), and phosphorylated 4-EBP-1 (p-4EBP-1). Experiments were performed in duplicate, with representative results shown.
Supplementary Methods from Activation of Tumor-Promoting Type 2 Macrophages by EGFR-Targeting Antibody Cetuximab
Authors: Pander Jan , Heusinkveld Moniek , van der Straaten Tahar , Jordanova Ekaterina S. , Baak-Pablo Renée , Gelderblom Hans , Morreau Hans , van der Burg Sjoerd H. , Guchelaar Henk-Jan , van Hall Thorbald
Published: April 2023

PDF file - 83K
Supplementary Figure 2 from Activation of Tumor-Promoting Type 2 Macrophages by EGFR-Targeting Antibody Cetuximab
Authors: Pander Jan , Heusinkveld Moniek , van der Straaten Tahar , Jordanova Ekaterina S. , Baak-Pablo Renée , Gelderblom Hans , Morreau Hans , van der Burg Sjoerd H. , Guchelaar Henk-Jan , van Hall Thorbald
Published: April 2023

PDF file - 233K
Supplementary Figure 1 from Akt Inhibitors MK-2206 and Nelfinavir Overcome mTOR Inhibitor Resistance in Diffuse Large B-cell Lymphoma
Authors: Petrich Adam M. , Leshchenko Violetta , Kuo Pei-Yu , Xia Bing , Thirukonda Venu K. , Ulahannan Netha , Gordon Shanisha , Fazzari Melissa J. , Ye B. Hilda , Sparano Joseph A. , Parekh Samir
Published: April 2023

PDF file - 294K, A. Using the Core Analysis function on the Ingenuity Pathway Analysis (IPA) Server, a gene signature of only those genes over-expressed by Rapamycin-resistant cell lines (p<0.03) was analyzed. A schematic diagram of the top pathway enriched by this analysis is shown. B. Untreated cell lysates of eight cell lines (those used to determine GEP signature associated with Rapamycin resistance) were prepared and analyzed by Western blot technique. Each experiment was repeated, with representative results provided. Shown here are results from analysis of phosphorylated Akt (p-Akt), Total Akt, and actin. C-D. Protein levels of phosphorylated Akt (p-Akt), total Akt, and actin were assayed by Western blotting. Levels of phosphorylated and total Akt were quantified, respectively, as proportions of actin (X-axis; measured with ImageJ as described in "Methods and Materials"), and then plotted against the IC50 (Y-axis) for that particular cell line.
Supplementary Figure Legend from Vandetanib, an Inhibitor of VEGF Receptor-2 and EGF Receptor, Suppresses Tumor Development and Improves Prognosis of Liver Cancer in Mice
Authors: Inoue Kinya , Torimura Takuji , Nakamura Toru , Iwamoto Hideki , Masuda Hiroshi , Abe Mitsuhiko , Hashimoto Osamu , Koga Hironori , Ueno Takato , Yano Hirohisa , Sata Michio
Published: April 2023

PDF file, 68KB.
Supplementary Figure 3B from Vandetanib, an Inhibitor of VEGF Receptor-2 and EGF Receptor, Suppresses Tumor Development and Improves Prognosis of Liver Cancer in Mice
Authors: Inoue Kinya , Torimura Takuji , Nakamura Toru , Iwamoto Hideki , Masuda Hiroshi , Abe Mitsuhiko , Hashimoto Osamu , Koga Hironori , Ueno Takato , Yano Hirohisa , Sata Michio
Published: April 2023

PDF file, 72KB, Vandetanib inhibits serum AFP level of tumor-bearing mice.
Supplementary Figure Legends 1-5, Table Legends 1-2 from Notch Signaling Promotes Growth and Invasion in Uveal Melanoma
Authors: Asnaghi Laura , Ebrahimi Katayoon B. , Schreck Karisa C. , Bar Eli E. , Coonfield Michael L. , Bell W. Robert , Handa James , Merbs Shannath L. , Harbour J. William , Eberhart Charles G.
Published: April 2023

PDF file - 69K
Supplementary Figure 4 from Notch Signaling Promotes Growth and Invasion in Uveal Melanoma
Authors: Asnaghi Laura , Ebrahimi Katayoon B. , Schreck Karisa C. , Bar Eli E. , Coonfield Michael L. , Bell W. Robert , Handa James , Merbs Shannath L. , Harbour J. William , Eberhart Charles G.
Published: April 2023

PDF file - 2.5MB
Supplementary Tables 1, 3, 5 from Primary Colorectal Cancers and Their Subsequent Hepatic Metastases Are Genetically Different: Implications for Selection of Patients for Targeted Treatment
Authors: Vermaat Joost S. , Nijman Isaac J. , Koudijs Marco J. , Gerritse Frank L. , Scherer Stefan J. , Mokry Michal , Roessingh Wijnand M. , Lansu Nico , de Bruijn Ewart , van Hillegersberg Richard , van Diest Paul J. , Cuppen Edwin , Voest Emile E.
Published: April 2023

PDF file 2.7MB
Supplementary Figure 7 from Downregulation of SMG-1 in HPV-Positive Head and Neck Squamous Cell Carcinoma Due to Promoter Hypermethylation Correlates with Improved Survival
Authors: Gubanova Evgenia , Brown Brandee , Ivanov Sergei V. , Helleday Thomas , Mills Gordon B. , Yarbrough Wendell G. , Issaeva Natalia
Published: April 2023

PDF file - 3.5MB
Supplementary Figure 4 from Downregulation of SMG-1 in HPV-Positive Head and Neck Squamous Cell Carcinoma Due to Promoter Hypermethylation Correlates with Improved Survival
Authors: Gubanova Evgenia , Brown Brandee , Ivanov Sergei V. , Helleday Thomas , Mills Gordon B. , Yarbrough Wendell G. , Issaeva Natalia
Published: April 2023

PDF file - 580K
Related Article from Therapeutic Oligonucleotides: The Road Not Taken
Authors: Stein Cy A. , Goel Sanjay
Published: April 2023

Related Article from Therapeutic Oligonucleotides: The Road Not Taken
Supplementary Figure 1 from Maintained Sensitivity to EGFR Tyrosine Kinase Inhibitors in EGFR-Mutant Lung Cancer Recurring after Adjuvant Erlotinib or Gefitinib
Authors: Oxnard Geoffrey R. , Janjigian Yelena Y. , Arcila Maria E. , Sima Camelia S. , Kass Samantha L. , Riely Gregory J. , Pao William , Kris Mark G. , Ladanyi Marc , Azzoli Christopher G. , Miller Vincent A.
Published: April 2023

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CCR Translation for This Article from Plectin-1 as a Novel Biomarker for Pancreatic Cancer
Authors: Bausch Dirk , Thomas Stephanie , Mino-Kenudson Mari , Fernández-del Castillo Carlos , Bauer Todd W. , Williams Mark , Warshaw Andrew L. , Thayer Sarah P. , Kelly Kimberly A.
Published: April 2023

CCR Translation for This Article from Plectin-1 as a Novel Biomarker for Pancreatic Cancer
Supplementary Figure 1 from Glioblastoma Stem–like Cell Lines with Either Maintenance or Loss of High-Level EGFR Amplification, Generated via Modulation of Ligand Concentration
Authors: Schulte Alexander , Günther Hauke S. , Martens Tobias , Zapf Svenja , Riethdorf Sabine , Wülfing Clemens , Stoupiec Malgorzata , Westphal Manfred , Lamszus Katrin
Published: April 2023

PDF file - 53K
Supplementary Figures 1-3, Tables 1-6 from Loss of 18q22.3 Involving the Carboxypeptidase of Glutamate-like Gene Is Associated with Poor Prognosis in Resected Pancreatic Cancer
Authors: Lee Jih-Hsiang , Giovannetti Elisa , Hwang Jin-Hyeok , Petrini Iacopo , Wang Qiuyan , Voortman Johannes , Wang Yonghong , Steinberg Seth M. , Funel Niccola , Meltzer Paul S. , Wang Yisong , Giaccone Giuseppe
Published: April 2023

PDF file - 271K
Supplementary Table 2 from Induction of HLA-DP4–Restricted Anti-Survivin Th1 and Th2 Responses Using an Artificial Antigen-Presenting Cell
Authors: Tanaka Makito , Butler Marcus O. , Ansén Sascha , Imataki Osamu , Berezovskaya Alla , Nadler Lee M. , Hirano Naoto
Published: April 2023

PDF file - 126K
Supplementary Table 1 from Induction of HLA-DP4–Restricted Anti-Survivin Th1 and Th2 Responses Using an Artificial Antigen-Presenting Cell
Authors: Tanaka Makito , Butler Marcus O. , Ansén Sascha , Imataki Osamu , Berezovskaya Alla , Nadler Lee M. , Hirano Naoto
Published: April 2023

PDF file - 145K
Supplementary Table 1 from Tumor Infiltrating Immune Cells and Outcome of Merkel Cell Carcinoma: A Population-Based Study
Authors: Sihto Harri , Böhling Tom , Kavola Heli , Koljonen Virve , Salmi Marko , Jalkanen Sirpa , Joensuu Heikki
Published: April 2023

PDF file, 19KB, Antibodies and conditions in immunohistochemical stainings.
Supplementary Table 1 from A Phase I Clinical Trial of Ad5.SSTR/TK.RGD, a Novel Infectivity-Enhanced Bicistronic Adenovirus, in Patients with Recurrent Gynecologic Cancer
Authors: Kim Kenneth H. , Dmitriev Igor , O'Malley Janis P. , Wang Minghui , Saddekni Souheil , You Zhiying , Preuss Meredith A. , Harris Raymond D. , Aurigemma Rosemarie , Siegal Gene P. , Zinn Kurt R. , Curiel David T. , Alvarez Ronald D.
Published: April 2023

PDF file - 51K, Patients were then assigned into one of three Ad5.SSTR/TK.RGD dose cohorts ranging from 1 x 109 vp/d to 1 x 1012 vp/d (6 x 107 pfu/d to 6 x 1010 pfu/d). This dose administration strategy has been validated in our preclinical studies; assigned Ad5.SSTR/TK
Supplementary Figure and Table Legends from A Phase I Clinical Trial of Ad5.SSTR/TK.RGD, a Novel Infectivity-Enhanced Bicistronic Adenovirus, in Patients with Recurrent Gynecologic Cancer
Authors: Kim Kenneth H. , Dmitriev Igor , O'Malley Janis P. , Wang Minghui , Saddekni Souheil , You Zhiying , Preuss Meredith A. , Harris Raymond D. , Aurigemma Rosemarie , Siegal Gene P. , Zinn Kurt R. , Curiel David T. , Alvarez Ronald D.
Published: April 2023

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Supplementary Figure Legend from Upregulated JAG1 Enhances Cell Proliferation in Adrenocortical Carcinoma
Authors: Simon Derek P. , Giordano Thomas J. , Hammer Gary D.
Published: April 2023

PDF file, 70KB.
Supplementary Table 7 from MicroRNA Molecular Profiles Associated with Diagnosis, Clinicopathologic Criteria, and Overall Survival in Patients with Resectable Pancreatic Ductal Adenocarcinoma
Authors: Jamieson Nigel B. , Morran Douglas C. , Morton Jennifer P. , Ali Asif , Dickson Euan J. , Carter C. Ross , Sansom Owen J. , Evans T.R. Jeffry , McKay Colin J. , Oien Karin A.
Published: April 2023

PDF file - 189K, Multivariate Cox regression analysis of association of PTEN and clinicopathological factors and overall survival.
Supplementary Methods, Figures 1-2 from A Phase I Combination Study of Olaparib with Cisplatin and Gemcitabine in Adults with Solid Tumors
Authors: Rajan Arun , Carter Corey A. , Kelly Ronan J. , Gutierrez Martin , Kummar Shivaani , Szabo Eva , Yancey Mary Ann , Ji Jiuping , Mannargudi Baskar , Woo Sukyung , Spencer Shawn , Figg William Douglas , Giaccone Giuseppe
Published: April 2023

PDF file - 154K
Supplementary Figure 2 from Prognostic Model for Survival in Patients with Metastatic Renal Cell Carcinoma: Results from the International Kidney Cancer Working Group
Authors: Manola Judith , Royston Patrick , Elson Paul , McCormack Jennifer Bacik , Mazumdar Madhu , Négrier Sylvie , Escudier Bernard , Eisen Tim , Dutcher Janice , Atkins Michael , Heng Daniel Y.C. , Choueiri Toni K. , Motzer Robert , Bukowski Ronald
Published: April 2023

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Supplementary Figures 1 - 3 from Dicer-Mediated Upregulation of BCRP Confers Tamoxifen Resistance in Human Breast Cancer Cells
Authors: Selever Jennifer , Gu Guowei , Lewis Michael T. , Beyer Amanda , Herynk Matthew H. , Covington Kyle R. , Tsimelzon Anna , Dontu Gabriela , Provost Patrick , Di Pietro Attilio , Boumendjel Ahcène , Albain Kathy , Miele Lucio , Weiss Heidi , Barone Ines , Ando Sebastiano , Fuqua Suzanne A. W.
Published: April 2023

PDF file - 1575KB
Supplementary Figure Legend from Dicer-Mediated Upregulation of BCRP Confers Tamoxifen Resistance in Human Breast Cancer Cells
Authors: Selever Jennifer , Gu Guowei , Lewis Michael T. , Beyer Amanda , Herynk Matthew H. , Covington Kyle R. , Tsimelzon Anna , Dontu Gabriela , Provost Patrick , Di Pietro Attilio , Boumendjel Ahcène , Albain Kathy , Miele Lucio , Weiss Heidi , Barone Ines , Ando Sebastiano , Fuqua Suzanne A. W.
Published: April 2023

PDF file - 69KB
Supplementary Methods and Materials from Heat Shock Protein 90 Inhibitor Is Synergistic with JAK2 Inhibitor and Overcomes Resistance to JAK2-TKI in Human Myeloproliferative Neoplasm Cells
Authors: Fiskus Warren , Verstovsek Srdan , Manshouri Taghi , Rao Rekha , Balusu Ramesh , Venkannagari Sreedhar , Rao Nalabothula Narasimha , Ha Kyungsoo , Smith Jacqueline E. , Hembruff Stacey L. , Abhyankar Sunil , McGuirk Joseph , Bhalla Kapil N.
Published: April 2023

PDF file (67KB)
Figures 1-4 from Heat Shock Protein 90 Inhibitor Is Synergistic with JAK2 Inhibitor and Overcomes Resistance to JAK2-TKI in Human Myeloproliferative Neoplasm Cells
Authors: Fiskus Warren , Verstovsek Srdan , Manshouri Taghi , Rao Rekha , Balusu Ramesh , Venkannagari Sreedhar , Rao Nalabothula Narasimha , Ha Kyungsoo , Smith Jacqueline E. , Hembruff Stacey L. , Abhyankar Sunil , McGuirk Joseph , Bhalla Kapil N.
Published: April 2023

PDF file (228KB)
Supplementary Table 3 from Activation of PI3K Signaling in Merkel Cell Carcinoma
Authors: Nardi Valentina , Song Youngchul , Santamaria-Barria Juan A. , Cosper Arjola K. , Lam Quynh , Faber Anthony C. , Boland Genevieve M. , Yeap Beow Y. , Bergethon Kristin , Scialabba Vanessa L. , Tsao Hensin , Settleman Jeffrey , Ryan David P. , Borger Darrell R. , Bhan Atul K. , Hoang Mai P. , Iafrate Anthony J. , Cusack James C. , Engelman Jeffrey A. , Dias-Santagata Dora
Published: April 2023

PDF file - 55K
Supplementary Table 2 from Gene Expression, Molecular Class Changes, and Pathway Analysis after Neoadjuvant Systemic Therapy for Breast Cancer
Authors: Gonzalez-Angulo Ana M. , Iwamoto Takayuki , Liu Shuying , Chen Huiqin , Do Kim-Anh , Hortobagyi Gabriel N. , Mills Gordon B. , Meric-Bernstam Funda , Symmans W. Fraser , Pusztai Lajos
Published: April 2023

PDF file - 525K
Supplementary Table 1 from Gene Expression, Molecular Class Changes, and Pathway Analysis after Neoadjuvant Systemic Therapy for Breast Cancer
Authors: Gonzalez-Angulo Ana M. , Iwamoto Takayuki , Liu Shuying , Chen Huiqin , Do Kim-Anh , Hortobagyi Gabriel N. , Mills Gordon B. , Meric-Bernstam Funda , Symmans W. Fraser , Pusztai Lajos
Published: April 2023

PDF file - 183K
Supplementary Figure 1 from Novel Functional Germline Variants in the VEGF Receptor 2 Gene and Their Effect on Gene Expression and Microvessel Density in Lung Cancer
Authors: Glubb Dylan M. , Cerri Elisa , Giese Alexandra , Zhang Wei , Mirza Osman , Thompson Emma E. , Chen Peixian , Das Soma , Jassem Jacek , Rzyman Witold , Lingen Mark W. , Salgia Ravi , Hirsch Fred R. , Dziadziuszko Rafal , Ballmer-Hofer Kurt , Innocenti Federico
Published: April 2023

PDF file - 7.40MB, Pairwised LDPlotter analysis for KDR SNPs within three ethnic groups (MAF>5%). The panels show the pair-wise LD pattern using for the three ethnic groups using the SNP ID labels from Table S4.
Supplementary Tables 1-14 from Two Distinct Routes to Oral Cancer Differing in Genome Instability and Risk for Cervical Node Metastasis
Authors: Bhattacharya Aditi , Roy Ritu , Snijders Antoine M. , Hamilton Gregory , Paquette Jesse , Tokuyasu Taku , Bengtsson Henrik , Jordan Richard C. K. , Olshen Adam B. , Pinkel Daniel , Schmidt Brian L. , Albertson Donna G.
Published: April 2023

PDF file - 1MB
Supplementary Figure 3 from Distinct Signal Transduction Abnormalities and Erythropoietin Response in Bone Marrow Hematopoietic Cell Subpopulations of Myelodysplastic Syndrome Patients
Authors: Spinelli Elena , Caporale Roberto , Buchi Francesca , Masala Erico , Gozzini Antonella , Sanna Alessandro , Sassolini Francesca , Valencia Ana , Bosi Alberto , Santini Valeria
Published: April 2023

PDF file - 55K, Dot plot indicating basal activation of P-ERK1/2, P-STAT5, P-p38 MAPK, and cleaved caspase-3 in CD45+ MDS and normal cells
Supplementary Figure 6 from Two Distinct Routes to Oral Cancer Differing in Genome Instability and Risk for Cervical Node Metastasis
Authors: Bhattacharya Aditi , Roy Ritu , Snijders Antoine M. , Hamilton Gregory , Paquette Jesse , Tokuyasu Taku , Bengtsson Henrik , Jordan Richard C. K. , Olshen Adam B. , Pinkel Daniel , Schmidt Brian L. , Albertson Donna G.
Published: April 2023

PDF file - 1MB
Supplementary Figure 1 from Distinct Signal Transduction Abnormalities and Erythropoietin Response in Bone Marrow Hematopoietic Cell Subpopulations of Myelodysplastic Syndrome Patients
Authors: Spinelli Elena , Caporale Roberto , Buchi Francesca , Masala Erico , Gozzini Antonella , Sanna Alessandro , Sassolini Francesca , Valencia Ana , Bosi Alberto , Santini Valeria
Published: April 2023

PDF file - 58K, Basal activation of P-ERK1/2, P-STAT5, P-p38 MAPK, and cleaved caspase-3 in CD34+ MDS and normal cells
Supplementary Table 8 from Complex Patterns of Altered MicroRNA Expression during the Adenoma-Adenocarcinoma Sequence for Microsatellite-Stable Colorectal Cancer
Authors: Bartley Angela N. , Yao Hui , Barkoh Bedia A. , Ivan Cristina , Mishra Bal M. , Rashid Asif , Calin George A. , Luthra Rajyalakshmi , Hamilton Stanley R.
Published: April 2023

XLS file - 94K
Supplementary Figures 1-3, Tables 1-3 from A Genome-Wide Association Study of Overall Survival in Pancreatic Cancer Patients Treated with Gemcitabine in CALGB 80303
Authors: Innocenti Federico , Owzar Kouros , Cox Nancy L. , Evans Patrick , Kubo Michiaki , Zembutsu Hitoshi , Jiang Chen , Hollis Donna , Mushiroda Taisei , Li Liang , Friedman Paula , Wang Liewei , Glubb Dylan , Hurwitz Herbert , Giacomini Kathleen M. , McLeod Howard L. , Goldberg Richard M. , Schilsky Richard L. , Kindler Hedy L. , Nakamura Yusuke , Ratain Mark J.
Published: April 2023

PDF file - 155K
Supplementary Table 7 from Complex Patterns of Altered MicroRNA Expression during the Adenoma-Adenocarcinoma Sequence for Microsatellite-Stable Colorectal Cancer
Authors: Bartley Angela N. , Yao Hui , Barkoh Bedia A. , Ivan Cristina , Mishra Bal M. , Rashid Asif , Calin George A. , Luthra Rajyalakshmi , Hamilton Stanley R.
Published: April 2023

PDF file - 60K
Supplementary Table 3 from Complex Patterns of Altered MicroRNA Expression during the Adenoma-Adenocarcinoma Sequence for Microsatellite-Stable Colorectal Cancer
Authors: Bartley Angela N. , Yao Hui , Barkoh Bedia A. , Ivan Cristina , Mishra Bal M. , Rashid Asif , Calin George A. , Luthra Rajyalakshmi , Hamilton Stanley R.
Published: April 2023

PDF file - 73K
Supplementary Figure 1 from Complex Patterns of Altered MicroRNA Expression during the Adenoma-Adenocarcinoma Sequence for Microsatellite-Stable Colorectal Cancer
Authors: Bartley Angela N. , Yao Hui , Barkoh Bedia A. , Ivan Cristina , Mishra Bal M. , Rashid Asif , Calin George A. , Luthra Rajyalakshmi , Hamilton Stanley R.
Published: April 2023

PDF file - 62K
Supplementary Figure 7 from Preferential Replication of Systemically Delivered Oncolytic Vaccinia Virus in Focally Irradiated Glioma Xenografts
Authors: Advani Sunil J. , Buckel Lisa , Chen Nanhai G. , Scanderbeg Daniel J. , Geissinger Ulrike , Zhang Qian , Yu Yong A. , Aguilar Richard J. , Mundt Arno J. , Szalay Aladar A.
Published: April 2023

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Supplementary Table 2 from Defining a Gene Promoter Methylation Signature in Sputum for Lung Cancer Risk Assessment
Authors: Leng Shuguang , Do Kieu , Yingling Christin M. , Picchi Maria A. , Wolf Holly J. , Kennedy Timothy C. , Feser William J. , Baron Anna E. , Franklin Wilbur A. , Brock Malcolm V. , Herman James G. , Baylin Stephen B. , Byers Tim , Stidley Christine A. , Belinsky Steven A.
Published: April 2023

PDF file - 66K, Genes methylated in lung cancer but not associated with predicting lung cancer in sputum from the Colorado case-control Study
Supplementary Figure 2D from Notch1 Expression, Which Is Related to p65 Status, Is an Independent Predictor of Prognosis in Colorectal Cancer
Authors: Chu Dake , Zhou Yi , Zhang Zixi , Li Yuming , Li Jipeng , Zheng Jianyong , Zhang Hongwei , Zhao Qingchuan , Wang Weizhong , Wang Rui'an , Ji Gang
Published: April 2023

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Supplementary Figure 2C from Notch1 Expression, Which Is Related to p65 Status, Is an Independent Predictor of Prognosis in Colorectal Cancer
Authors: Chu Dake , Zhou Yi , Zhang Zixi , Li Yuming , Li Jipeng , Zheng Jianyong , Zhang Hongwei , Zhao Qingchuan , Wang Weizhong , Wang Rui'an , Ji Gang
Published: April 2023

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Supplementary Table 2 from Upregulated IL-19 in Breast Cancer Promotes Tumor Progression and Affects Clinical Outcome
Authors: Hsing Chung-Hsi , Cheng Hung-Chi , Hsu Yu-Hsiang , Chan Chien-Hui , Yeh Ching-Hua , Li Chien-Feng , Chang Ming-Shi
Published: April 2023

PDF file - 52K