bluuebunny/crossref_metadata_2025 huggingface dataset:
Supplementary Materials and Methods, Figures 1 - 6, Tables 1 - 4 from High-Throughput Detection of Clinically Relevant Mutations in Archived Tumor Samples by Multiplexed PCR and Next-Generation Sequencing
Authors: Bourgon Richard , Lu Shan , Yan Yibing , Lackner Mark R. , Wang Weiru , Weigman Victor , Wang David , Guan Yinghui , Ryner Lisa , Koeppen Hartmut , Patel Rajesh , Hampton Garret M. , Amler Lukas C. , Wang Yulei
Published: April 2023

PDF file - 731KB, Supplementary Figure 1. Schematic workflow of MMP-seq. Supplementary Figure 2. Examples of tiling and hotspot amplicon designs. Supplementary Figure 3. Consistent target enrichment and variant allele quantification in FF biological replicates. Supplementary Figure 4. Correlation between called variant frequencies in paired FF and FFPE samples. Supplementary Figure 5. UDG treatment improves sequencing specificity but has no impact on sensitivity. Supplementary Figure 6. PIK3R1 mutation profiles from TCGA endometrial cancer study. Supplementary Table 1. MMP-seq target genes. Supplementary Table 2. Latin Square Design. Supplementary Table 3. Latin square mutation read frequency detected when sequencing input cell lines for Latin square cross-dilutions. Supplementary Table 4. Pretreatment of FFPE DNA samples with uracil-DNA glycosylase (UDG) resulted in markedly reduction of false positives.
Supplemental Table 2 from Differential Platelet Levels Affect Response to Taxane-Based Therapy in Ovarian Cancer
Authors: Bottsford-Miller Justin , Choi Hyun-Jin , Dalton Heather J. , Stone Rebecca L. , Cho Min Soon , Haemmerle Monika , Nick Alpa M. , Pradeep Sunila , Zand Behrouz , Previs Rebecca A. , Pecot Chad V. , Crane Erin King , Hu Wei , Lutgendorf Susan K. , Afshar-Kharghan Vahid , Sood Anil K.
Published: April 2023

Supplemental Table 2: Patterns of platelet level changes through treatment and surveillance until recurrence.
Supplemental Table 1 from Differential Platelet Levels Affect Response to Taxane-Based Therapy in Ovarian Cancer
Authors: Bottsford-Miller Justin , Choi Hyun-Jin , Dalton Heather J. , Stone Rebecca L. , Cho Min Soon , Haemmerle Monika , Nick Alpa M. , Pradeep Sunila , Zand Behrouz , Previs Rebecca A. , Pecot Chad V. , Crane Erin King , Hu Wei , Lutgendorf Susan K. , Afshar-Kharghan Vahid , Sood Anil K.
Published: April 2023

Supplemental Table 1: Patient Demographics.
Supplementary Figure S2 from The Efficacy of the Wee1 Inhibitor MK-1775 Combined with Temozolomide Is Limited by Heterogeneous Distribution across the Blood–Brain Barrier in Glioblastoma
Authors: Pokorny Jenny L. , Calligaris David , Gupta Shiv K. , Iyekegbe Dennis O. , Mueller Dustin , Bakken Katrina K. , Carlson Brett L. , Schroeder Mark A. , Evans Debra L. , Lou Zhenkun , Decker Paul A. , Eckel-Passow Jeanette E. , Pucci Vincenzo , Ma Bennett , Shumway Stuart D. , Elmquist William F. , Agar Nathalie Y.R. , Sarkaria Jann N.
Published: April 2023

Supplementary Figure S2. Analysis of DNA damage by immunofluorescence based γH2AX foci formation in GBM6 and GBM22 after MK-1775 or radiation treatment.
Supplementary Figure S1 from The Ability of Bilirubin in Identifying Smokers with Higher Risk of Lung Cancer: A Large Cohort Study in Conjunction with Global Metabolomic Profiling
Authors: Wen Chi-Pang , Zhang Fanmao , Liang Dong , Wen Christopher , Gu Jian , Skinner Heath , Chow Wong-Ho , Ye Yuanqing , Pu Xia , Hildebrandt Michelle A.T. , Huang Maosheng , Chen Chien-Hua , Hsiung Chao Agnes , Tsai Min Kuang , Tsao Chwen Keng , Lippman Scott M. , Wu Xifeng
Published: April 2023

Supplementary Figure S1. Distribution of serum total bilirubin levels among male and female participants
Data Supplement from SAR650984, A Novel Humanized CD38-Targeting Antibody, Demonstrates Potent Antitumor Activity in Models of Multiple Myeloma and Other CD38+ Hematologic Malignancies
Authors: Deckert Jutta , Wetzel Marie-Cécile , Bartle Laura M. , Skaletskaya Anna , Goldmacher Victor S. , Vallée François , Zhou-Liu Qing , Ferrari Paul , Pouzieux Stéphanie , Lahoute Charlotte , Dumontet Charles , Plesa Adriana , Chiron Marielle , Lejeune Pascale , Chittenden Thomas , Park Peter U. , Blanc Véronique
Published: April 2023

Supplementary Methods, Table and Figure Legends. Supplementary Table S1. Serum level of IgG in multiple myeloma patient samples.
Data Supplement from SAR650984, A Novel Humanized CD38-Targeting Antibody, Demonstrates Potent Antitumor Activity in Models of Multiple Myeloma and Other CD38+ Hematologic Malignancies
Authors: Deckert Jutta , Wetzel Marie-Cécile , Bartle Laura M. , Skaletskaya Anna , Goldmacher Victor S. , Vallée François , Zhou-Liu Qing , Ferrari Paul , Pouzieux Stéphanie , Lahoute Charlotte , Dumontet Charles , Plesa Adriana , Chiron Marielle , Lejeune Pascale , Chittenden Thomas , Park Peter U. , Blanc Véronique
Published: April 2023

Supplementary Figure S2. Close-up view of the salt-bridges interactions between huCD38 and the heavy-chain of SAR650984-Fab
Data Supplement from The Combination of Circulating Ang1 and Tie2 Levels Predicts Progression-Free Survival Advantage in Bevacizumab-Treated Patients with Ovarian Cancer
Authors: Backen Alison , Renehan Andrew G. , Clamp Andrew R. , Berzuini Carlo , Zhou Cong , Oza Amit , Bannoo Selina , Scherer Stefan J. , Banks Rosamonde E. , Dive Caroline , Jayson Gordon C.
Published: April 2023

Supplementary Figure S1: Ang1 and Tie2 were the biomarkers of main interest in this study. We initially confirmed, as these were measured on the same plex, that they were independent of each other; Supplementary Figure S2: Biomarker distributions (as histograms) with upper and lower limits of detections; Supplementary Figure S3: The Kaplan-Meier survival estimator was employed to visualize the PFS of patient groups defined as having supra- or infra-median concentrations of Ang1 and Tie2, in the two treatment arms.
Table S1 from Acquisition of Relative Interstrand Crosslinker Resistance and PARP Inhibitor Sensitivity in Fanconi Anemia Head and Neck Cancers
Authors: Lombardi Anne J. , Hoskins Elizabeth E. , Foglesong Grant D. , Wikenheiser-Brokamp Kathryn A. , Wiesmüller Lisa , Hanenberg Helmut , Andreassen Paul R. , Jacobs Allison J. , Olson Susan B. , Keeble Winifred W. , Hays Laura E. , Wells Susanne I.
Published: April 2023

Table S1. Analyses and crosslinker sensitivity of murine Fancc and wild type cell lines
Supplementary figure 2 from Tadalafil Reduces Myeloid-Derived Suppressor Cells and Regulatory T Cells and Promotes Tumor Immunity in Patients with Head and Neck Squamous Cell Carcinoma
Authors: Weed Donald T. , Vella Jennifer L. , Reis Isildinha M. , De la fuente Adriana C. , Gomez Carmen , Sargi Zoukaa , Nazarian Ronen , Califano Joseph , Borrello Ivan , Serafini Paolo
Published: April 2023

Supplementary figure 2. Tadalafil immunomodulatory properties in relation to body surface area, body mass index,or plasma volume
Data Supplement from An Integrative Analysis of the Tumorigenic Role of TAZ in Human Non–Small Cell Lung Cancer
Authors: Noguchi Satoshi , Saito Akira , Horie Masafumi , Mikami Yu , Suzuki Hiroshi I. , Morishita Yasuyuki , Ohshima Mitsuhiro , Abiko Yoshimitsu , Mattsson Johanna Sofia Margareta , König Helena , Lohr Miriam , Edlund Karolina , Botling Johan , Micke Patrick , Nagase Takahide
Published: April 2023

Supplementary Figure S1. Correlation between mutation status and TAZ expression.
Data Supplement from An Integrative Analysis of the Tumorigenic Role of TAZ in Human Non–Small Cell Lung Cancer
Authors: Noguchi Satoshi , Saito Akira , Horie Masafumi , Mikami Yu , Suzuki Hiroshi I. , Morishita Yasuyuki , Ohshima Mitsuhiro , Abiko Yoshimitsu , Mattsson Johanna Sofia Margareta , König Helena , Lohr Miriam , Edlund Karolina , Botling Johan , Micke Patrick , Nagase Takahide
Published: April 2023

Supplementary Figure S2. TAZ expression in TMA.
Supplementary Tables S1-7 from Integrative Analysis of DCE-MRI and Gene Expression Profiles in Construction of a Gene Classifier for Assessment of Hypoxia-Related Risk of Chemoradiotherapy Failure in Cervical Cancer
Authors: Fjeldbo Christina S. , Julin Cathinka H. , Lando Malin , Forsberg Malin F. , Aarnes Eva-Katrine , Alsner Jan , Kristensen Gunnar B. , Malinen Eirik , Lyng Heidi
Published: April 2023

Supplementary Table S1. Patient and tumor characteristics of locally advanced squamous cell carcinoma of the uterine cervix included in the study. Supplementary Table S2: TaqMan assays used for testing the 6-gene hypoxia classifier using RT-qPCR. Supplementary Table S3: Hypoxia-induced change in expression of 31 signature genes in eight cervical cancer cell lines measured by Illumina beadarrays. Supplementary Table S4: Number of patients classified to the more and less hypoxic group based on the 6-gene hypoxia classifier (Illumina data) and ABrix data. Supplementary Table S5: Calculation of precision, sensitivity and specificity for classification of more and less hypoxic tumors defined by ABrix based on the 6-gene hypoxia classifier Supplementary Table S6: Estimation of robustness of classifier with missing data. Supplementary Table S7: Numbers of patients classified to the more and less hypoxic group based on RT-qPCR and Illumina WG-6 data.
Data Supplement from An Integrative Analysis of the Tumorigenic Role of TAZ in Human Non–Small Cell Lung Cancer
Authors: Noguchi Satoshi , Saito Akira , Horie Masafumi , Mikami Yu , Suzuki Hiroshi I. , Morishita Yasuyuki , Ohshima Mitsuhiro , Abiko Yoshimitsu , Mattsson Johanna Sofia Margareta , König Helena , Lohr Miriam , Edlund Karolina , Botling Johan , Micke Patrick , Nagase Takahide
Published: April 2023

Supplementary Figure S6. Activation of the EGFR signaling pathway in NSCLC with high TAZ expression.
Supplementary Figure 3 from Mitochondrial Topoisomerase I (Top1mt) Is a Novel Limiting Factor of Doxorubicin Cardiotoxicity
Authors: Khiati Salim , Dalla Rosa Ilaria , Sourbier Carole , Ma Xuefei , Rao V. Ashutosh , Neckers Leonard M. , Zhang Hongliang , Pommier Yves
Published: April 2023

PDF file - 43KB, A, Histograms show Top2B expression levels quantified by Western blotting and the right panel shows representative Western blotting images. B, Quantification of TOP2B mRNA levels in heart tissue from WT and Top1mt KO mice.
Supplementary Table 2 from Integration of Cell Line and Clinical Trial Genome-Wide Analyses Supports a Polygenic Architecture of Paclitaxel-Induced Sensory Peripheral Neuropathy
Authors: Wheeler Heather E. , Gamazon Eric R. , Wing Claudia , Njiaju Uchenna O. , Njoku Chidiamara , Baldwin Robert Michael , Owzar Kouros , Jiang Chen , Watson Dorothy , Shterev Ivo , Kubo Michiaki , Zembutsu Hitoshi , Winer Eric P. , Hudis Clifford A. , Shulman Lawrence N. , Nakamura Yusuke , Ratain Mark J. , Kroetz Deanna L. , Cox Nancy J. , Dolan Mary Eileen
Published: April 2023

PDF file - 65K, Empirical P-values generated from patient/LCL enrichment analyses using a range of P-value inclusion thresholds for SNP overlap.
Supplementary Method from MultiDimensional ClinOmics for Precision Therapy of Children and Adolescent Young Adults with Relapsed and Refractory Cancer: A Report from the Center for Cancer Research
Authors: Chang Wendy , Brohl Andrew S. , Patidar Rajesh , Sindiri Sivasish , Shern Jack F. , Wei Jun S. , Song Young K. , Yohe Marielle E. , Gryder Berkley , Zhang Shile , Calzone Kathleen A. , Shivaprasad Nityashree , Wen Xinyu , Badgett Thomas C. , Miettinen Markku , Hartman Kip R. , League-Pascual James C. , Trahair Toby N. , Widemann Brigitte C. , Merchant Melinda S. , Kaplan Rosandra N. , Lin Jimmy C. , Khan Javed
Published: April 2023

Supplementary Method
Supplementary Tables from Synergy Between VEGF/VEGFR Inhibitors and Chemotherapy Agents in the Phase I Clinic
Authors: Tang Chad , Hess Kenneth , Jardim Denis Leonardo F. , Gagliato Debora De Melo , Tsimberidou Apostolia M. , Falchook Gerald , Fu Siqing , Janku Filip , Naing Aung , Piha-Paul Sarina , Subbiah Vivek , Wheler Jennifer , Zinner Ralph G. , Kurzrock Razelle , Ellis Lee M. , Meric-Berstam Funda , Hong David S.
Published: April 2023

Supplementary Tables. Supplemental Table 1: Frequency of specific MET, NRAS, and KRAS mutations Supplemental Table 2. Distribution of patients with BRAF mutations
Supplementary Table 5 from Development and Clinical Validation of a Blood Test Based on 29-Gene Expression for Early Detection of Colorectal Cancer
Authors: Ciarloni Laura , Ehrensberger Sahar Hosseinian , Imaizumi Natsuko , Monnier-Benoit Sylvain , Nichita Cristina , Myung Seung-Jae , Kim Joo Sung , Song Si Young , Kim Tae Il , van der Weg Boudewijn , Meier Rémy , Borovicka Jan , Beglinger Christoph , Vallet Cédric , Maerten Philippe , Rüegg Curzio , Dorta Gian
Published: April 2023

Positivity of Colox test by age, sex and type of recruitment. This table reports the positivity of Colox test by age, sex and type of recrutment
Titles and captions for supplementary tables and figures from First-in-Human Phase I Study of Pictilisib (GDC-0941), a Potent Pan–Class I Phosphatidylinositol-3-Kinase (PI3K) Inhibitor, in Patients with Advanced Solid Tumors
Authors: Sarker Debashis , Ang Joo Ern , Baird Richard , Kristeleit Rebecca , Shah Krunal , Moreno Victor , Clarke Paul A. , Raynaud Florence I. , Levy Gallia , Ware Joseph A. , Mazina Kathryn , Lin Ray , Wu Jenny , Fredrickson Jill , Spoerke Jill M. , Lackner Mark R. , Yan Yibing , Friedman Lori S. , Kaye Stan B. , Derynck Mika K. , Workman Paul , de Bono Johann S.
Published: April 2023

Titles and Captions for supplementary tables and figures.
Supplementary Table 2 from First-in-Human Phase I Study of Pictilisib (GDC-0941), a Potent Pan–Class I Phosphatidylinositol-3-Kinase (PI3K) Inhibitor, in Patients with Advanced Solid Tumors
Authors: Sarker Debashis , Ang Joo Ern , Baird Richard , Kristeleit Rebecca , Shah Krunal , Moreno Victor , Clarke Paul A. , Raynaud Florence I. , Levy Gallia , Ware Joseph A. , Mazina Kathryn , Lin Ray , Wu Jenny , Fredrickson Jill , Spoerke Jill M. , Lackner Mark R. , Yan Yibing , Friedman Lori S. , Kaye Stan B. , Derynck Mika K. , Workman Paul , de Bono Johann S.
Published: April 2023

Supplementary Table 2. Details of patients who achieved a partial response by RECIST, GCIG CA125 or 18F-FDG-PET EORTC criteria.
Supplementary Figure Legend from Characterization of a Large Panel of Patient-Derived Tumor Xenografts Representing the Clinical Heterogeneity of Human Colorectal Cancer
Authors: Julien Sylvia , Merino-Trigo Ana , Lacroix Ludovic , Pocard Marc , Goéré Diane , Mariani Pascale , Landron Sophie , Bigot Ludovic , Nemati Fariba , Dartigues Peggy , Weiswald Louis-Bastien , Lantuas Denis , Morgand Loïc , Pham Emmanuel , Gonin Patrick , Dangles-Marie Virginie , Job Bastien , Dessen Philippe , Bruno Alain , Pierré Alain , De Thé Hugues , Soliman Hany , Nunes Manoel , Lardier Guillaume , Calvet Loreley , Demers Brigitte , Prévost Grégoire , Vrignaud Patricia , Roman-Roman Sergio , Duchamp Olivier , Berthet Cyril
Published: April 2023

PDF file, 72K.
Supplementary Figure 4 from Characterization of a Large Panel of Patient-Derived Tumor Xenografts Representing the Clinical Heterogeneity of Human Colorectal Cancer
Authors: Julien Sylvia , Merino-Trigo Ana , Lacroix Ludovic , Pocard Marc , Goéré Diane , Mariani Pascale , Landron Sophie , Bigot Ludovic , Nemati Fariba , Dartigues Peggy , Weiswald Louis-Bastien , Lantuas Denis , Morgand Loïc , Pham Emmanuel , Gonin Patrick , Dangles-Marie Virginie , Job Bastien , Dessen Philippe , Bruno Alain , Pierré Alain , De Thé Hugues , Soliman Hany , Nunes Manoel , Lardier Guillaume , Calvet Loreley , Demers Brigitte , Prévost Grégoire , Vrignaud Patricia , Roman-Roman Sergio , Duchamp Olivier , Berthet Cyril
Published: April 2023

PDF file, 923K, Comparison of gene expression between primary tumor sample, early and late xenograft sample.
Data Supplement from Genomic and Transcriptional Alterations in Lung Adenocarcinoma in Relation to Smoking History
Authors: Karlsson Anna , Ringnér Markus , Lauss Martin , Botling Johan , Micke Patrick , Planck Maria , Staaf Johan
Published: April 2023

Supplementary Figure S3. Distribution of never-smokers and smokers in unsupervised consensus clusters from adenocarcinoma gene expression microarray cohorts.
Data Supplement from Genomic and Transcriptional Alterations in Lung Adenocarcinoma in Relation to Smoking History
Authors: Karlsson Anna , Ringnér Markus , Lauss Martin , Botling Johan , Micke Patrick , Planck Maria , Staaf Johan
Published: April 2023

Supplementary Figure S6. Expression of proliferation-associated genes in adenocarcinoma subgroups defined by clinical smoking history or gene expression phenotypes (bronchioid, magnoid, squamoid), and the association of these phenotypes with smoking history.
Data Supplement from Genomic and Transcriptional Alterations in Lung Adenocarcinoma in Relation to Smoking History
Authors: Karlsson Anna , Ringnér Markus , Lauss Martin , Botling Johan , Micke Patrick , Planck Maria , Staaf Johan
Published: April 2023

Detailed description of data processing steps including mutation analyses, detection of CNAs, unsupervised transcriptional analyses, and supervised genomic and transcriptional analyses.
Data Supplement from Genomic and Transcriptional Alterations in Lung Adenocarcinoma in Relation to Smoking History
Authors: Karlsson Anna , Ringnér Markus , Lauss Martin , Botling Johan , Micke Patrick , Planck Maria , Staaf Johan
Published: April 2023

Supplementary Table S2. Detailed clinicopathological characteristics of the 1398-sample genomic cohort and all transcriptional adenocarcinoma cohorts with respect to patient smoking history.
Data Supplement from Genomic and Transcriptional Alterations in Lung Adenocarcinoma in Relation to Smoking History
Authors: Karlsson Anna , Ringnér Markus , Lauss Martin , Botling Johan , Micke Patrick , Planck Maria , Staaf Johan
Published: April 2023

Supplementary Table S3. Smoking-related copy number alterations from genome-wide analysis in lung adenocarcinoma.
Data Supplement from Functional Genetic Approach Identifies MET, HER3, IGF1R, INSR Pathways as Determinants of Lapatinib Unresponsiveness in HER2-Positive Gastric Cancer
Authors: Zhang Zhe , Wang Jiping , Ji Dongmei , Wang Chenchen , Liu Rujiao , Wu Zheng , Liu Lian , Zhu Dan , Chang Jinjia , Geng Ruixuan , Xiong Lei , Fang Qiangyi , Li Jin
Published: April 2023

Supplementary Figure 5. Constitutive Activation of IGF-1R Signaling Promotes Resistance to Lapatinib in HER2-positive N87 Cells
Supplementary Methods, Tables 1 - 2 from Neural Autoantibody Clusters Aid Diagnosis of Cancer
Authors: Horta Erika S. , Lennon Vanda A. , Lachance Daniel H. , Jenkins Sarah M. , Smith Carin Y. , McKeon Andrew , Klein Christopher , Pittock Sean J.
Published: April 2023

PDF file - 118KB, Supplementary Table 1. number of patients for each observed clusters with 4 autoantibodies. Supplementary Table 2. Number of patients for each observed clusters with 5 autoantibodies.
Supplementary Materials and Methods from TNF-Related Apoptosis-Inducing Ligand (TRAIL)–Armed Exosomes Deliver Proapoptotic Signals to Tumor Site
Authors: Rivoltini Licia , Chiodoni Claudia , Squarcina Paola , Tortoreto Monica , Villa Antonello , Vergani Barbara , Bürdek Maja , Botti Laura , Arioli Ivano , Cova Agata , Mauri Giorgio , Vergani Elisabetta , Bianchi Beatrice , Della Mina Pamela , Cantone Laura , Bollati Valentina , Zaffaroni Nadia , Gianni Alessandro Massimo , Colombo Mario Paolo , Huber Veronica
Published: April 2023

Homing of TRAIL exosomes to tumor site. Labeling of exosomes with PKH26, treatment schedule and evaluation of lesions by confocal microscopy and flow cytometry. Pharmacokinetics and biodistribution of TRAIL exosomes. Near-Infrared labeling of exosomes, injection schedule and evaluation methods in plasma (Near-Infrared Imaging and ELISA) and organs (Near-Infrared Imaging).
Supplementary Table 4 from Cytoplasmic Accumulation of Sequestosome 1 (p62) Is a Predictor of Biochemical Recurrence, Rapid Tumor Cell Proliferation, and Genomic Instability in Prostate Cancer
Authors: Burdelski Christoph , Reiswich Viktor , Hube-Magg Claudia , Kluth Martina , Minner Sarah , Koop Christina , Graefen Markus , Heinzer Hans , Tsourlakis Maria Christina , Wittmer Corinna , Huland Hartwig , Simon Ronald , Schlomm Thorsten , Sauter Guido , Steurer Stefan
Published: April 2023

Supplementary Table 4. Association between p62 immunostaining and Ki67 labeling index in subsets of prostate cancers with different Gleason scores, stratified according to the ERG-status
Supplementary Figure Legends from TNF-Related Apoptosis-Inducing Ligand (TRAIL)–Armed Exosomes Deliver Proapoptotic Signals to Tumor Site
Authors: Rivoltini Licia , Chiodoni Claudia , Squarcina Paola , Tortoreto Monica , Villa Antonello , Vergani Barbara , Bürdek Maja , Botti Laura , Arioli Ivano , Cova Agata , Mauri Giorgio , Vergani Elisabetta , Bianchi Beatrice , Della Mina Pamela , Cantone Laura , Bollati Valentina , Zaffaroni Nadia , Gianni Alessandro Massimo , Colombo Mario Paolo , Huber Veronica
Published: April 2023

Legends to Supplementary Figures S1-S4
Supplementary Figure 5 from CD99 Triggering in Ewing Sarcoma Delivers a Lethal Signal through p53 Pathway Reactivation and Cooperates with Doxorubicin
Authors: Guerzoni Clara , Fiori Valentina , Terracciano Mario , Manara Maria Cristina , Moricoli Diego , Pasello Michela , Sciandra Marika , Nicoletti Giordano , Gellini Mara , Dominici Sabrina , Chiodoni Claudia , Fornasari Pier Maria , Lollini Pier-Luigi , Colombo Mario P. , Picci Piero , Cianfriglia Maurizio , Magnani Mauro , Scotlandi Katia
Published: April 2023

Effects of combined treatment with doxorubicin and dAbd C7.
Data Supplement from GSK-3β–Regulated N-Acetyltransferase 10 Is Involved in Colorectal Cancer Invasion
Authors: Zhang Hong , Hou Wei , Wang Hua-Li , Liu Hai-Jing , Jia Xin-Ying , Zheng Xing-Zheng , Zou Yong-Xin , Li Xin , Hou Lin , McNutt Michael A. , Zhang Bo
Published: April 2023

Supplementary Figure S4. The subcellular distribution of NAT10 induced by inhibition of GSK-3β could not be antagonized by FH535.
Data Supplement from GSK-3β–Regulated N-Acetyltransferase 10 Is Involved in Colorectal Cancer Invasion
Authors: Zhang Hong , Hou Wei , Wang Hua-Li , Liu Hai-Jing , Jia Xin-Ying , Zheng Xing-Zheng , Zou Yong-Xin , Li Xin , Hou Lin , McNutt Michael A. , Zhang Bo
Published: April 2023

Supplementary materials and methods
Supplementary Figure 2 from CD99 Triggering in Ewing Sarcoma Delivers a Lethal Signal through p53 Pathway Reactivation and Cooperates with Doxorubicin
Authors: Guerzoni Clara , Fiori Valentina , Terracciano Mario , Manara Maria Cristina , Moricoli Diego , Pasello Michela , Sciandra Marika , Nicoletti Giordano , Gellini Mara , Dominici Sabrina , Chiodoni Claudia , Fornasari Pier Maria , Lollini Pier-Luigi , Colombo Mario P. , Picci Piero , Cianfriglia Maurizio , Magnani Mauro , Scotlandi Katia
Published: April 2023

Effects of 0662 on Gadd45-α mRNA expression and osteoblastic differentiation on mesenchymal stem cells.
Data Supplement from GSK-3β–Regulated N-Acetyltransferase 10 Is Involved in Colorectal Cancer Invasion
Authors: Zhang Hong , Hou Wei , Wang Hua-Li , Liu Hai-Jing , Jia Xin-Ying , Zheng Xing-Zheng , Zou Yong-Xin , Li Xin , Hou Lin , McNutt Michael A. , Zhang Bo
Published: April 2023

Supplementary Table S1. GFP-NAT10s, construction and subcellular localization; Supplementary Table S2. Primers used in PCR-direct sequencing for the 28 exons of NAT10gene (Gene ID: 55226); Supplementary Table 3: Correlations between cytoplasmic/membranous staining of NAT10 and nuclear translocation of β-catenin in CRCs; Supplementary Table S4. Correlations between cytoplasmic/membranous staining of NAT10 and staining of E-cadherin and GSK-3β; TableS5. Correlations between NAT10 membranous staining and clinicopathologic parameters in CRCs.
Supplementary Figure 1 from CD99 Triggering in Ewing Sarcoma Delivers a Lethal Signal through p53 Pathway Reactivation and Cooperates with Doxorubicin
Authors: Guerzoni Clara , Fiori Valentina , Terracciano Mario , Manara Maria Cristina , Moricoli Diego , Pasello Michela , Sciandra Marika , Nicoletti Giordano , Gellini Mara , Dominici Sabrina , Chiodoni Claudia , Fornasari Pier Maria , Lollini Pier-Luigi , Colombo Mario P. , Picci Piero , Cianfriglia Maurizio , Magnani Mauro , Scotlandi Katia
Published: April 2023

p53 is necessary for CD99-induced cell-death and is phosphorilated by 0662.
Supplementary Table 3 from Disruption of Follicular Dendritic Cells–Follicular Lymphoma Cross-talk by the Pan-PI3K Inhibitor BKM120 (Buparlisib)
Authors: Matas-Céspedes Alba , Rodriguez Vanina , Kalko Susana G. , Vidal-Crespo Anna , Rosich Laia , Casserras Teresa , Balsas Patricia , Villamor Neus , Giné Eva , Campo Elías , Roué Gaël , López-Guillermo Armando , Colomer Dolors , Pérez-Galán Patricia
Published: April 2023

PDF file - 311K, Gene sets regulated by co-culture of FL cells with HK- FDC.
Supplementary Methods from Disruption of Follicular Dendritic Cells–Follicular Lymphoma Cross-talk by the Pan-PI3K Inhibitor BKM120 (Buparlisib)
Authors: Matas-Céspedes Alba , Rodriguez Vanina , Kalko Susana G. , Vidal-Crespo Anna , Rosich Laia , Casserras Teresa , Balsas Patricia , Villamor Neus , Giné Eva , Campo Elías , Roué Gaël , López-Guillermo Armando , Colomer Dolors , Pérez-Galán Patricia
Published: April 2023

PDF file - 61K
Supplementary Figure 4 from Oncogenic BRAF(V600E) Promotes Stromal Cell-Mediated Immunosuppression Via Induction of Interleukin-1 in Melanoma
Authors: Khalili Jahan S. , Liu Shujuan , Rodríguez-Cruz Tania G. , Whittington Mayra , Wardell Seth , Liu Chengwen , Zhang Minying , Cooper Zachary A. , Frederick Dennie T. , Li Yufeng , Zhang Min , Joseph Richard W. , Bernatchez Chantale , Ekmekcioglu Suhendan , Grimm Elizabeth , Radvanyi Laszlo G. , Davis Richard E. , Davies Michael A. , Wargo Jennifer A. , Hwu Patrick , Lizée Gregory
Published: April 2023

PDF file, 188K, Tumor-associated fibroblasts (TAF) cultures were derived from three separate metastatic melanoma biopsies from three distinct anatomical sites: lymph node, lung and soft tissue. Cultured TAFs were exposed overnight to IL-1α, and treated and untreated cells were subjected to Affymetrix gene expression analysis. (A) Heatmap displaying the 197 most differentially expressed genes selected at FDR 0.01. Relative expression values are indicated by the color bar. (B) Gene set enrichment analysis of IL-1α-treated TAFs demonstrates a strong correlation with gene sets previously identified to be associated with NF-kappaB upregulation and the interferon response. (C) Heatmap showing IL-1α induced expression of nine genes previously reported to be associated with T-cell suppression.
Supplementary Figure 4 from Disruption of Follicular Dendritic Cells–Follicular Lymphoma Cross-talk by the Pan-PI3K Inhibitor BKM120 (Buparlisib)
Authors: Matas-Céspedes Alba , Rodriguez Vanina , Kalko Susana G. , Vidal-Crespo Anna , Rosich Laia , Casserras Teresa , Balsas Patricia , Villamor Neus , Giné Eva , Campo Elías , Roué Gaël , López-Guillermo Armando , Colomer Dolors , Pérez-Galán Patricia
Published: April 2023

PDF file - 127K, BKM120 interferes with FDC-induced angiogenesis.
Supplementary Figure 2 from Oncogenic BRAF(V600E) Promotes Stromal Cell-Mediated Immunosuppression Via Induction of Interleukin-1 in Melanoma
Authors: Khalili Jahan S. , Liu Shujuan , Rodríguez-Cruz Tania G. , Whittington Mayra , Wardell Seth , Liu Chengwen , Zhang Minying , Cooper Zachary A. , Frederick Dennie T. , Li Yufeng , Zhang Min , Joseph Richard W. , Bernatchez Chantale , Ekmekcioglu Suhendan , Grimm Elizabeth , Radvanyi Laszlo G. , Davis Richard E. , Davies Michael A. , Wargo Jennifer A. , Hwu Patrick , Lizée Gregory
Published: April 2023

PDF file, 303K, IL-1α production is reduced by BRAF knockdown shRNA expression in melanoma cells. IL-1α staining in WM793 melanoma cells transduced with scrambled shRNA vector, BRAF targeting shRNA vectors, or untranduced as indicated. Expression of shRNA is indicated by coexpression of RFP (x-axis) and is induced by treatment with 2 ug/mL Doxycycline (DOX) (Lower). Cells were treated with DOX for one week prior to flow analysis by intracellular staining for IL-1α.
Supplementary Data from Translational Phase I Trial of Vorinostat (Suberoylanilide Hydroxamic Acid) Combined with Cytarabine and Etoposide in Patients with Relapsed, Refractory, or High-Risk Acute Myeloid Leukemia
Authors: Gojo Ivana , Tan Ming , Fang Hong-Bin , Sadowska Mariola , Lapidus Rena , Baer Maria R. , Carrier France , Beumer Jan H. , Anyang Bean N. , Srivastava Rakesh K. , Espinoza-Delgado Igor , Ross Douglas D.
Published: April 2023

PDF file - 81 KB, Supplemental Table S1. Eligibility Criteria - NCT00357305 Supplemental Table S2: Characteristics of 21 patients enrolled in the study Supplemental Table S3. Cell cycle phase distribution Supplemental Table S3, continued. Cell cycle phase distribution Supplemental Table S4. Death receptor data
Supplementary Figure 1 from Disruption of Follicular Dendritic Cells–Follicular Lymphoma Cross-talk by the Pan-PI3K Inhibitor BKM120 (Buparlisib)
Authors: Matas-Céspedes Alba , Rodriguez Vanina , Kalko Susana G. , Vidal-Crespo Anna , Rosich Laia , Casserras Teresa , Balsas Patricia , Villamor Neus , Giné Eva , Campo Elías , Roué Gaël , López-Guillermo Armando , Colomer Dolors , Pérez-Galán Patricia
Published: April 2023

PDF file - 580K, Significantly modulated genes by FDC co-culture in FL cells identified by Rank Products test.
Supplemental Table 3 from An Integrated Molecular Analysis of Lung Adenocarcinomas Identifies Potential Therapeutic Targets among TTF1-Negative Tumors, Including DNA Repair Proteins and Nrf2
Authors: Cardnell Robert J.G. , Behrens Carmen , Diao Lixia , Fan YouHong , Tang Ximing , Tong Pan , Minna John D. , Mills Gordon B. , Heymach John V. , Wistuba Ignacio I. , Wang Jing , Byers Lauren A.
Published: April 2023

Supplemental Table 3. Protein expression correlated to TTF1 expression in PROSPECT.
Supplemental Figure 4 from An Integrated Molecular Analysis of Lung Adenocarcinomas Identifies Potential Therapeutic Targets among TTF1-Negative Tumors, Including DNA Repair Proteins and Nrf2
Authors: Cardnell Robert J.G. , Behrens Carmen , Diao Lixia , Fan YouHong , Tang Ximing , Tong Pan , Minna John D. , Mills Gordon B. , Heymach John V. , Wistuba Ignacio I. , Wang Jing , Byers Lauren A.
Published: April 2023

Supplemental Figure 4. DNA repair score trends higher in TTF1-low LUAD cell lines.
Data Supplement from Large-Scale Characterization of DNA Methylation Changes in Human Gastric Carcinomas with and without Metastasis
Authors: Liu Zhaojun , Zhang Jun , Gao Yanhong , Pei Lirong , Zhou Jing , Gu Liankun , Zhang Lianhai , Zhu Budong , Hattori Naoko , Ji Jiafu , Yuasa Yasuhito , Kim Wooho , Ushijima Toshikazu , Shi Huidong , Deng Dajun
Published: April 2023

Supplementary Figure S4. Methylation levels of GFRA1, SRF, and ZNF382 by DHPLC are confirmed by MethyLight and inversely correlated with their transcription levels. (A) Correlation between DNA methylation levels measured by DHPLC and MethyLight. The methylation levels of GFRA1, SRF, and ZNF382 measured by DHPLC positively correlated with the results obtained using MethyLight assay. RCN, relative copy number relative to the reference gene COL2A1 for bisulfite-modified DNA; (B) The methylation levels of these genes were inversely correlated with their mRNA levels. The mRNA levels were determined by quantitative RT-PCR assays in matched GC tissues. Statistically significant correlations were obtained using Spearman test. RCN, relative copy number relative to the reference gene GAPDH.
Supplementary Table 3 from Secreted Protein Acidic and Rich in Cysteines-like 1 Suppresses Aggressiveness and Predicts Better Survival in Colorectal Cancers
Authors: Hu Hanguang , Zhang Hang , Ge Weiting , Liu Xiyong , Loera Sofia , Chu Peiguo , Chen Huarong , Peng Jiaping , Zhou Lun , Yu Shujing , Yuan Ying , Zhang Suzhan , Lai Lily , Yen Yun , Zheng Shu
Published: April 2023

PDF file, 126K, Uni- and Multivariate COX analysis for SPARCL1 and overall survival of CRCs.
Data Supplement from Large-Scale Characterization of DNA Methylation Changes in Human Gastric Carcinomas with and without Metastasis
Authors: Liu Zhaojun , Zhang Jun , Gao Yanhong , Pei Lirong , Zhou Jing , Gu Liankun , Zhang Lianhai , Zhu Budong , Hattori Naoko , Ji Jiafu , Yuasa Yasuhito , Kim Wooho , Ushijima Toshikazu , Shi Huidong , Deng Dajun
Published: April 2023

Supplementary Figure S5. IHC images of GCs and SMs in the GFRA1, SRF, and ZNF382 immunostaining.
Supplementary Table 1 from Secreted Protein Acidic and Rich in Cysteines-like 1 Suppresses Aggressiveness and Predicts Better Survival in Colorectal Cancers
Authors: Hu Hanguang , Zhang Hang , Ge Weiting , Liu Xiyong , Loera Sofia , Chu Peiguo , Chen Huarong , Peng Jiaping , Zhou Lun , Yu Shujing , Yuan Ying , Zhang Suzhan , Lai Lily , Yen Yun , Zheng Shu
Published: April 2023

PDF file, 67K, Primer sequences in RT-PCR analysis.
Supplementary Figure Legend from Secreted Protein Acidic and Rich in Cysteines-like 1 Suppresses Aggressiveness and Predicts Better Survival in Colorectal Cancers
Authors: Hu Hanguang , Zhang Hang , Ge Weiting , Liu Xiyong , Loera Sofia , Chu Peiguo , Chen Huarong , Peng Jiaping , Zhou Lun , Yu Shujing , Yuan Ying , Zhang Suzhan , Lai Lily , Yen Yun , Zheng Shu
Published: April 2023

PDF file, 112K.
Supplementary Figure 6 from Secreted Protein Acidic and Rich in Cysteines-like 1 Suppresses Aggressiveness and Predicts Better Survival in Colorectal Cancers
Authors: Hu Hanguang , Zhang Hang , Ge Weiting , Liu Xiyong , Loera Sofia , Chu Peiguo , Chen Huarong , Peng Jiaping , Zhou Lun , Yu Shujing , Yuan Ying , Zhang Suzhan , Lai Lily , Yen Yun , Zheng Shu
Published: April 2023

PDF file, 93K, High expression of SPARCL1 is associated with survival of patients with colon cancers and related to prognosis in both early and late stages.
Supplementary table 2 from A Phase I Trial of Single-Agent Reolysin in Patients with Relapsed Multiple Myeloma
Authors: Sborov Douglas W. , Nuovo Gerard J. , Stiff Andrew , Mace Thomas , Lesinski Gregory B. , Benson Don M. , Efebera Yvonne A. , Rosko Ashley E. , Pichiorri Flavia , Grever Michael R. , Hofmeister Craig C.
Published: April 2023

Supplementary table 2. Five patients experienced at least grade 2 adverse events. Two of the 5 patients received at least 4 cycles of treatment, and the associated adverse events were noted after cycle 1. All cytopenias resolved prior to the completion of the cycle that adverse event occurred. Abbreviations: DL = dose level, m-protein = monoclonal protein, CXDX = cycle X, day X, NA = not available.
Supplementary Figure 2 from Secreted Protein Acidic and Rich in Cysteines-like 1 Suppresses Aggressiveness and Predicts Better Survival in Colorectal Cancers
Authors: Hu Hanguang , Zhang Hang , Ge Weiting , Liu Xiyong , Loera Sofia , Chu Peiguo , Chen Huarong , Peng Jiaping , Zhou Lun , Yu Shujing , Yuan Ying , Zhang Suzhan , Lai Lily , Yen Yun , Zheng Shu
Published: April 2023

PDF file, 38K, Study design.
Supplementary Table S1 from Carfilzomib Triggers Cell Death in Chronic Lymphocytic Leukemia by Inducing Proapoptotic and Endoplasmic Reticulum Stress Responses
Authors: Lamothe Betty , Wierda William G. , Keating Michael J. , Gandhi Varsha
Published: April 2023

Supplementary Table S1: Reagents, cell lines, shRNAs, and antibodies used in this study.
Supplementary Figure S1 from Carfilzomib Triggers Cell Death in Chronic Lymphocytic Leukemia by Inducing Proapoptotic and Endoplasmic Reticulum Stress Responses
Authors: Lamothe Betty , Wierda William G. , Keating Michael J. , Gandhi Varsha
Published: April 2023

Supplementary Figure S1. Carfilzomib treatment resulted in the accumulation of polyubiquitinated MCL-1 and Noxa.
Supplementary Table 2 from To “Grow” or “Go”: TMEM16A Expression as a Switch between Tumor Growth and Metastasis in SCCHN
Authors: Shiwarski Daniel J. , Shao Chunbo , Bill Anke , Kim Jean , Xiao Dong , Bertrand Carol A. , Seethala Raja S. , Sano Daisuke , Myers Jeffery N. , Ha Patrick , Grandis Jennifer , Gaither L. Alex , Puthenveedu Manojkumar A. , Duvvuri Umamaheswar
Published: April 2023

PDF file - 133K, Table summarizing the data from Figure 6.
Supplementary Table 1 from To “Grow” or “Go”: TMEM16A Expression as a Switch between Tumor Growth and Metastasis in SCCHN
Authors: Shiwarski Daniel J. , Shao Chunbo , Bill Anke , Kim Jean , Xiao Dong , Bertrand Carol A. , Seethala Raja S. , Sano Daisuke , Myers Jeffery N. , Ha Patrick , Grandis Jennifer , Gaither L. Alex , Puthenveedu Manojkumar A. , Duvvuri Umamaheswar
Published: April 2023

PDF file - 292K, Table of values for proteomics screen.
Supplementary Figure 7 from β-1,4-Galactosyltransferase III Enhances Invasive Phenotypes Via β1-Integrin and Predicts Poor Prognosis in Neuroblastoma
Authors: Chang Hsiu-Hao , Chen Chia-Hua , Chou Chih-Hsing , Liao Yung-Feng , Huang Miao-Juei , Chen Ya-Hsin , Wang Wei-Jen , Huang John , Hung Ji-Shiang , Ho Wan-Ling , Jeng Yung-Ming , Che Mei-Ieng , Lee Hsinyu , Lu Meng-Yao , Yang Yung-Li , Jou Shiann-Tarng , Lin Dong-Tsamn , Lin Kai-Hsin , Hsu Wen-Ming , Huang Min-Chuan
Published: April 2023

PDF file - 115K, Effects of β1 integrin blocking antibody on B4GALT3-regulated migration and invasion
Supplementary Figure 6 from To “Grow” or “Go”: TMEM16A Expression as a Switch between Tumor Growth and Metastasis in SCCHN
Authors: Shiwarski Daniel J. , Shao Chunbo , Bill Anke , Kim Jean , Xiao Dong , Bertrand Carol A. , Seethala Raja S. , Sano Daisuke , Myers Jeffery N. , Ha Patrick , Grandis Jennifer , Gaither L. Alex , Puthenveedu Manojkumar A. , Duvvuri Umamaheswar
Published: April 2023

PDF file - 3396K, Overexpression of TMEM16A S970A increase anchorage dependent and independent tumor cell proliferation.
Supplementary Figure 5 from To “Grow” or “Go”: TMEM16A Expression as a Switch between Tumor Growth and Metastasis in SCCHN
Authors: Shiwarski Daniel J. , Shao Chunbo , Bill Anke , Kim Jean , Xiao Dong , Bertrand Carol A. , Seethala Raja S. , Sano Daisuke , Myers Jeffery N. , Ha Patrick , Grandis Jennifer , Gaither L. Alex , Puthenveedu Manojkumar A. , Duvvuri Umamaheswar
Published: April 2023

PDF file - 3718K, TMEM16A shRNA resistant DNA can rescue the expression from the stable shRNA knockdown.
Supplementary Figure 4 from To “Grow” or “Go”: TMEM16A Expression as a Switch between Tumor Growth and Metastasis in SCCHN
Authors: Shiwarski Daniel J. , Shao Chunbo , Bill Anke , Kim Jean , Xiao Dong , Bertrand Carol A. , Seethala Raja S. , Sano Daisuke , Myers Jeffery N. , Ha Patrick , Grandis Jennifer , Gaither L. Alex , Puthenveedu Manojkumar A. , Duvvuri Umamaheswar
Published: April 2023

PDF file - 132K, TMEM16A expression influences cell size measured via flow cytometry.
Supplementary Figure 3 from β-1,4-Galactosyltransferase III Enhances Invasive Phenotypes Via β1-Integrin and Predicts Poor Prognosis in Neuroblastoma
Authors: Chang Hsiu-Hao , Chen Chia-Hua , Chou Chih-Hsing , Liao Yung-Feng , Huang Miao-Juei , Chen Ya-Hsin , Wang Wei-Jen , Huang John , Hung Ji-Shiang , Ho Wan-Ling , Jeng Yung-Ming , Che Mei-Ieng , Lee Hsinyu , Lu Meng-Yao , Yang Yung-Li , Jou Shiann-Tarng , Lin Dong-Tsamn , Lin Kai-Hsin , Hsu Wen-Ming , Huang Min-Chuan
Published: April 2023

PDF file - 441K, Xenografts from SCID mice subcutaneously injected with SH-SY5Y/vector or SH-SY5Y/B4GALT3 cells
Supplementary Figure 1 from Counteracting Autophagy Overcomes Resistance to Everolimus in Mantle Cell Lymphoma
Authors: Rosich Laia , Xargay-Torrent Sílvia , López-Guerra Mónica , Campo Elías , Colomer Dolors , Roué Gaël
Published: April 2023

PDF file, 59K, Synergistic effect of everolimus and the Akt inhibitor Akti-1/2. REC-1, GRANTA-519 and Z-138 cells were pretreated with Akti-1/2 for 3 h and incubated with everolimus for 24 h at the indicated doses. Drug cytostatic effect was analyzed by MTT proliferation assay. CI value is indicated for each combination.
Supplementary Figures S1-S7, Table S1 from Cabozantinib Overcomes Crizotinib Resistance in ROS1 Fusion–Positive Cancer
Authors: Katayama Ryohei , Kobayashi Yuka , Friboulet Luc , Lockerman Elizabeth L. , Koike Sumie , Shaw Alice T. , Engelman Jeffrey A. , Fujita Naoya
Published: April 2023

Supplementary Figures S1-S7, Table S1. Figure S1 contains the cell survival data and immunoblot data of BaF3-CD74-ROS1 (WT) clones treated with multiple ALK-TKIs. Figure S2 contains the identified ROS1 mutations by ENU mutagenesis. Figure S3 contains the cell survival data and immunoblot data of the recovered Ba/F3-CD74-ROS1 mutant cells treated with crizotinib or ceritinib. Figure S4 contains the IC50 data and immunoblot data of the transformed BaF3 cells with CD74-ROS1 mutantstreated with crizotinib, ceritinib or AP26113. Figure S5 contains the structure of ROS1 kinase domain mapped resistant mutations corresponding to Figure 3D. Figure S6 contains the cell survival data and immunoblot data of the recovered Ba/F3-CD74-ROS1 mutant cells treated with cabozantinib (XL184). Figure S7 contains the IC50 data and immunoblot data of the transformed BaF3 cells with CD74-ROS1 mutants treated with cabozantinib (XL184). Table S1 contains the cell survival data of high throughput inhibitor screening corresponding to Table1.
Supplementary Figure S1. CONSORT diagram from Differential Effect on Bone Lesions of Targeting Integrins: Randomized Phase II Trial of Abituzumab in Patients with Metastatic Castration-Resistant Prostate Cancer
Authors: Hussain Maha , Le Moulec Sylvestre , Gimmi Claude , Bruns Rolf , Straub Josef , Miller Kurt
Published: April 2023

Supplementary Figure S1. CONSORT diagram showing patient disposition.
Supplementary Figure Legends from CADM1 Expression and Stepwise Downregulation of CD7 Are Closely Associated with Clonal Expansion of HTLV-I–Infected Cells in Adult T-cell Leukemia/Lymphoma
Authors: Kobayashi Seiichiro , Nakano Kazumi , Watanabe Eri , Ishigaki Tomohiro , Ohno Nobuhiro , Yuji Koichiro , Oyaizu Naoki , Asanuma Satomi , Yamagishi Makoto , Yamochi Tadanori , Watanabe Nobukazu , Tojo Arinobu , Watanabe Toshiki , Uchimaru Kaoru
Published: April 2023

PDF file - 86KB
Supplementary Figure 5 from CADM1 Expression and Stepwise Downregulation of CD7 Are Closely Associated with Clonal Expansion of HTLV-I–Infected Cells in Adult T-cell Leukemia/Lymphoma
Authors: Kobayashi Seiichiro , Nakano Kazumi , Watanabe Eri , Ishigaki Tomohiro , Ohno Nobuhiro , Yuji Koichiro , Oyaizu Naoki , Asanuma Satomi , Yamagishi Makoto , Yamochi Tadanori , Watanabe Nobukazu , Tojo Arinobu , Watanabe Toshiki , Uchimaru Kaoru
Published: April 2023

PDF file - 64KB, Summary of this study.
Supplementary Figure Legends from Brain Penetration and Efficacy of Different Mebendazole Polymorphs in a Mouse Brain Tumor Model
Authors: Bai Ren-Yuan , Staedtke Verena , Wanjiku Teresia , Rudek Michelle A. , Joshi Avadhut , Gallia Gary L. , Riggins Gregory J.
Published: April 2023

Supplementary figure legends provided the description of the 5 supplementary figures.
Supplementary Figure 5 from Brain Penetration and Efficacy of Different Mebendazole Polymorphs in a Mouse Brain Tumor Model
Authors: Bai Ren-Yuan , Staedtke Verena , Wanjiku Teresia , Rudek Michelle A. , Joshi Avadhut , Gallia Gary L. , Riggins Gregory J.
Published: April 2023

Supplementary Figure 5. Histopathology of a long-term survivor of D425 medullblastoma treated with elacridar and MBZ
Supplementary Table 3 from Expansion of CCR8+ Inflammatory Myeloid Cells in Cancer Patients with Urothelial and Renal Carcinomas
Authors: Eruslanov Evgeniy , Stoffs Taryn , Kim Wan-Ju , Daurkin Irina , Gilbert Scott M. , Su Li-Ming , Vieweg Johannes , Daaka Yehia , Kusmartsev Sergei
Published: April 2023

PDF file - 76K, Summary statistics for Fig. 1C and Fig.2A
Supplementary Table 2 from Expansion of CCR8+ Inflammatory Myeloid Cells in Cancer Patients with Urothelial and Renal Carcinomas
Authors: Eruslanov Evgeniy , Stoffs Taryn , Kim Wan-Ju , Daurkin Irina , Gilbert Scott M. , Su Li-Ming , Vieweg Johannes , Daaka Yehia , Kusmartsev Sergei
Published: April 2023

PDF file - 75K, Summary statistics for Figure 1
Supplementary Figure 1 from Brain Penetration and Efficacy of Different Mebendazole Polymorphs in a Mouse Brain Tumor Model
Authors: Bai Ren-Yuan , Staedtke Verena , Wanjiku Teresia , Rudek Michelle A. , Joshi Avadhut , Gallia Gary L. , Riggins Gregory J.
Published: April 2023

Supplementary Figure 1. Weight of the GL261 glioma-bearing mice treated with MBZ polymorphs
Supplementary Figure Legend from Expansion of CCR8+ Inflammatory Myeloid Cells in Cancer Patients with Urothelial and Renal Carcinomas
Authors: Eruslanov Evgeniy , Stoffs Taryn , Kim Wan-Ju , Daurkin Irina , Gilbert Scott M. , Su Li-Ming , Vieweg Johannes , Daaka Yehia , Kusmartsev Sergei
Published: April 2023

PDF file - 72K
Supplementary Figure 3 from Expansion of CCR8+ Inflammatory Myeloid Cells in Cancer Patients with Urothelial and Renal Carcinomas
Authors: Eruslanov Evgeniy , Stoffs Taryn , Kim Wan-Ju , Daurkin Irina , Gilbert Scott M. , Su Li-Ming , Vieweg Johannes , Daaka Yehia , Kusmartsev Sergei
Published: April 2023

PDF file - 51K, CCL1-induced IL6 production
Data Supplement from Acquired Resistance to Endocrine Treatments Is Associated with Tumor-Specific Molecular Changes in Patient-Derived Luminal Breast Cancer Xenografts
Authors: Cottu Paul , Bièche Ivan , Assayag Franck , El Botty Rania , Chateau-Joubert Sophie , Thuleau Aurélie , Bagarre Thomas , Albaud Benoit , Rapinat Audrey , Gentien David , de la Grange Pierre , Sibut Vonick , Vacher Sophie , Hatem Rana , Servely Jean-Luc , Fontaine Jean-Jacques , Decaudin Didier , Pierga Jean-Yves , Roman-Roman Sergio , Marangoni Elisabetta
Published: April 2023

Supplementary Table S7. Upstream regulators identified by the Upstream Regulator Analysis in HBCx22 TamR and HBCx34 TamR xenografts.
Supplementary Figure S6 from Polymorphism at 19q13.41 Predicts Breast Cancer Survival Specifically after Endocrine Therapy
Authors: Khan Sofia , Fagerholm Rainer , Rafiq Sajjad , Tapper William , Aittomäki Kristiina , Liu Jianjun , Blomqvist Carl , Eccles Diana , Nevanlinna Heli
Published: April 2023

Supplementary Figure S6. Protein-protein interaction network.
Supplementary Figure S4 from Polymorphism at 19q13.41 Predicts Breast Cancer Survival Specifically after Endocrine Therapy
Authors: Khan Sofia , Fagerholm Rainer , Rafiq Sajjad , Tapper William , Aittomäki Kristiina , Liu Jianjun , Blomqvist Carl , Eccles Diana , Nevanlinna Heli
Published: April 2023

Supplementary Figure S4. Forest plots of hazard ratios and their confidence intervals separately for studies HEBCS GWS and POSH GWS (stage-1) and POSH validation and SUCCESS-A (stage-2) along with the meta-analysis P-value of the stage-1 and stage-2.
Supplementary Figure S3 from Polymorphism at 19q13.41 Predicts Breast Cancer Survival Specifically after Endocrine Therapy
Authors: Khan Sofia , Fagerholm Rainer , Rafiq Sajjad , Tapper William , Aittomäki Kristiina , Liu Jianjun , Blomqvist Carl , Eccles Diana , Nevanlinna Heli
Published: April 2023

Supplementary Figure S3. Kaplan-Meier plots of cumulative 10-year survival of rs8113308 genotypes in POSH validation dataset
Supplementary Figure S1 from High CDK6 Protects Cells from Fulvestrant-Mediated Apoptosis and is a Predictor of Resistance to Fulvestrant in Estrogen Receptor–Positive Metastatic Breast Cancer
Authors: Alves Carla L. , Elias Daniel , Lyng Maria , Bak Martin , Kirkegaard Tove , Lykkesfeldt Anne E. , Ditzel Henrik J.
Published: April 2023

Putative upstream kinase scoring using kinase-substrate predictions of PamGene array data following specific CDK6 knockdown in fulvestrant-resistant cells.
Legends to Supplementary Figures S1 to S6 from Polymorphism at 19q13.41 Predicts Breast Cancer Survival Specifically after Endocrine Therapy
Authors: Khan Sofia , Fagerholm Rainer , Rafiq Sajjad , Tapper William , Aittomäki Kristiina , Liu Jianjun , Blomqvist Carl , Eccles Diana , Nevanlinna Heli
Published: April 2023

Legends to Supplementary Figures S1 to S6. This document comprises the legends to the supplementary figures.
Supplementary Materials and Methods from Tyrosine Kinase Signaling in Clear Cell and Papillary Renal Cell Carcinoma Revealed by Mass Spectrometry–Based Phosphotyrosine Proteomics
Authors: Haake Scott M. , Li Jiannong , Bai Yun , Kinose Fumi , Fang Bin , Welsh Eric A. , Zent Roy , Dhillon Jasreman , Pow-Sang Julio M. , Chen Y. Ann , Koomen John M. , Rathmell W. Kimryn , Fishman Mayer , Haura Eric B.
Published: April 2023

Supplementary Materials and Methods