bluuebunny/crossref_metadata_2025 huggingface dataset:
Supplementary Figure 1| Clonal Composition of ActinCreER2Rainbow Blood Vessels 180 and 270 days after Tamoxifen Administration from Dynamic Patterns of Clonal Evolution in Tumor Vasculature Underlie Alterations in Lymphocyte–Endothelial Recognition to Foster Tumor Immune Escape
Authors: Corey Daniel M. , Rinkevich Yuval , Weissman Irving L.
Published: April 2023

Clonal analysis results from 20 representative blood vessels 180 and 270 days after tamoxifen exposure show a uniform distribution in clonality within endothelium over the time period. We employed a Chi-squared test to evaluate the null hypothesis of equal distribution, which could not be rejected.
Supplementary Figures S1-S7 from A CDK4/6-Dependent Epigenetic Mechanism Protects Cancer Cells from PML-induced Senescence
Authors: Acevedo Mariana , Vernier Mathieu , Mignacca Lian , Lessard Frédéric , Huot Geneviève , Moiseeva Olga , Bourdeau Véronique , Ferbeyre Gerardo
Published: April 2023

Disabling RB bypasses PML-induced senescence in normal human fibroblasts (S1); Cyclin-dependent kinase inhibitors p21 and p16INK4A cooperate with PML to inhibit cancer cell proliferation (S2); CDK inhibitors enhance PML-mediated growth arrest and senescence in tumor cell lines (S3); Gene Set Enrichment Analysis (GSEA) showing homology to our gene expression profiling (S4); Gene Set Enrichment Analysis (GSEA) showing homology to our gene expression profiling (S5); Palbociclib or 5-Aza-dC sensitise cells to PML-induced irreversible growth arrest (S6); palbociclib decreased DNMT1 levels in a dose dependent manner (S7).
Supplemental Table 4 from Jak1–STAT3 Signals Are Essential Effectors of the USP6/TRE17 Oncogene in Tumorigenesis
Authors: Quick Laura , Young Robert , Henrich Ian C. , Wang Xiaoke , Asmann Yan W. , Oliveira Andre M. , Chou Margaret M.
Published: April 2023

Entire NF dataset
Supplementary Figures 1 through 8 from Targeting the WASF3–CYFIP1 Complex Using Stapled Peptides Suppresses Cancer Cell Invasion
Authors: Teng Yong , Bahassan Abdulaziz , Dong Dayong , Hanold Laura E. , Ren Xiaoou , Kennedy Eileen J. , Cowell John K.
Published: April 2023

Supplementary Figure S1. Real-time RT-PCR analysis shows that knockdown of CYFIP1 does not affect WASF1/2/3 transcript levels. Supplementary Figure S2. As a result of the knockdown for any of the three genes (shW1-1 and shW1-2 for WASF1, shW2-1 and shW2-2 for WASF2, shW3 and shW3-2 for WASF3), there was no change in proliferation compared to control knockdown cells (shGFP). Supplementary Figure S3. Expression levels of WASF3 (W3) are unchanged over a twenty-four hour period following treatment of MDA-MB-231 cells with either scrambled (SCR) or WAHM peptides. Supplementary Figure S4. Proliferation of MDA-MB-231 and PC3 cells are not significantly affected by treatment with either of the scrambled (SCR) peptides or WAHM peptides at two different concentrations, compared with vehicle alone treated (DMSO) cells. Supplementary Figure S5. In scratch wound assays (A) cell motility over 24 hours was recorded for four different cell lines; MDA-MB-231 and HS578T (breast cancer cells) and PC3 and DU145 (prostate cancer cells). Supplementary Figure S6. WAHM peptides suppress cell invasion in a dose-dependent manner. Supplementary Figure S7. Loss of phosphoactivated WASF3 in the absence of serum. MDA-MB-231 cells express high levels of WASF3 and PC3 cells express lower levels (input). Supplementary Figure S8. Rac2 is identified as a novel WASF3-interacting protein.
Supplemental Figure 3 from Jak1–STAT3 Signals Are Essential Effectors of the USP6/TRE17 Oncogene in Tumorigenesis
Authors: Quick Laura , Young Robert , Henrich Ian C. , Wang Xiaoke , Asmann Yan W. , Oliveira Andre M. , Chou Margaret M.
Published: April 2023

Jak1 qPCR
Supplementary Figures 1 through 17 and Supplementary Tables 1 and 2 from Activating Mutations in PIK3CB Confer Resistance to PI3K Inhibition and Define a Novel Oncogenic Role for p110β
Authors: Nakanishi Yoshito , Walter Kimberly , Spoerke Jill M. , O'Brien Carol , Huw Ling Y. , Hampton Garret M. , Lackner Mark R.
Published: April 2023

Supplementary Figure S1. Inhibition of AKT and S6 phosphorylation. Supplementary Figure S2. Cell growth inhibition by a panel of compounds. Supplementary Figure S3. Effect of GDC-0980 on AKT and S6 phosphorylation. Supplementary Figure S4. Cell growth inhibition by a panel of compounds. Supplementary Figure S5. Inhibition of AKT phosphorylation. Supplementary Figure S6. Cell growth inhibition by a panel of anti-cancer agents. Supplementary Figure S7. The alignment of C-terminus of Human p110 family. Supplementary Figure S8. Droplet digital PCR (ddPCR) detection of PIK3CB D1067Y mutation. Supplementary Figure S9. Detection of copy number variation. Supplementary Figure S10. A. Cell growth inhibition by GDC-0941. B. Droplet digital PCR (ddPCR) analysis of PTEN-null GDC-0941 resistant cell lines. Supplementary Figure S11. Droplet digital PCR detection of PIK3CB D1067V mutation. Supplementary Figure S12. PIK3CB mutant expressing EVSA-T cells are less sensitive to PI3K inhibitors. Supplementary Figure S13. Inhibition of AKT and S6 phosphorylation. Supplementary Figure S14. p110β dependency of A498. Supplementary Figure S15. ATP competition assay. Supplementary Figure S16. Relative quantification of baseline AKT phosphorylation levels in EVSA-T parental cells and resistant clones. Supplementary Figure S17. Signal profile in Rat-2 stable cell lines. Supplementary Table S1 Compound list. Supplementary Table S2 Whole exome sequencing list of genes mutated in EVSA-T GDC-0941 resistant cells.
Supplementary Tables S1-S7 from Downregulation of the TGFβ Pseudoreceptor BAMBI in Non–Small Cell Lung Cancer Enhances TGFβ Signaling and Invasion
Authors: Marwitz Sebastian , Depner Sofia , Dvornikov Dmytro , Merkle Ruth , Szczygieł Magdalena , Müller-Decker Karin , Lucarelli Philippe , Wäsch Marvin , Mairbäurl Heimo , Rabe Klaus F. , Kugler Christian , Vollmer Ekkehard , Reck Martin , Scheufele Swetlana , Kröger Maren , Ammerpohl Ole , Siebert Reiner , Goldmann Torsten , Klingmüller Ursula
Published: April 2023

Immunohistochemical analysis of patient material (S1); IHC score for TGF-beta pathway member from matched patient samples (S2); List of TGF-beta regulated genes (S3); List of EMT-related genes (S4); Results of paired t-tests for Microarray (S5); Patient information (S6); List of specific primers used for qRT-PCR gene expression analysis (S7).
Supplementary Methods from Downregulation of the TGFβ Pseudoreceptor BAMBI in Non–Small Cell Lung Cancer Enhances TGFβ Signaling and Invasion
Authors: Marwitz Sebastian , Depner Sofia , Dvornikov Dmytro , Merkle Ruth , Szczygieł Magdalena , Müller-Decker Karin , Lucarelli Philippe , Wäsch Marvin , Mairbäurl Heimo , Rabe Klaus F. , Kugler Christian , Vollmer Ekkehard , Reck Martin , Scheufele Swetlana , Kröger Maren , Ammerpohl Ole , Siebert Reiner , Goldmann Torsten , Klingmüller Ursula
Published: April 2023

Description of additional methods and procedures used in the study.
Figure S5 from S-nitrosylation of the Mitochondrial Chaperone TRAP1 Sensitizes Hepatocellular Carcinoma Cells to Inhibitors of Succinate Dehydrogenase
Authors: Rizza Salvatore , Montagna Costanza , Cardaci Simone , Maiani Emiliano , Di Giacomo Giuseppina , Sanchez-Quiles Virginia , Blagoev Blagoy , Rasola Andrea , De Zio Daniela , Stamler Jonathan S. , Cecconi Francesco , Filomeni Giuseppe
Published: April 2023

Mitochondrial content of HCC cells and overexpression of mitochondrial antioxidants.
Figure S2 from S-nitrosylation of the Mitochondrial Chaperone TRAP1 Sensitizes Hepatocellular Carcinoma Cells to Inhibitors of Succinate Dehydrogenase
Authors: Rizza Salvatore , Montagna Costanza , Cardaci Simone , Maiani Emiliano , Di Giacomo Giuseppina , Sanchez-Quiles Virginia , Blagoev Blagoy , Rasola Andrea , De Zio Daniela , Stamler Jonathan S. , Cecconi Francesco , Filomeni Giuseppe
Published: April 2023

TRAP1 undergoes ubiquitylation upon GSNOR downregulation.
Supplementary materials and methods from Heme Oxygenase-1 Controls an HDAC4-miR-206 Pathway of Oxidative Stress in Rhabdomyosarcoma
Authors: Ciesla Maciej , Marona Paulina , Kozakowska Magdalena , Jez Mateusz , Seczynska Marta , Loboda Agnieszka , Bukowska-Strakova Karolina , Szade Agata , Walawender Magdalena , Kusior Magdalena , Stepniewski Jacek , Szade Krzysztof , Krist Bart , Yagensky Oleksandr , Urbanik Aleksandra , Kazanowska Bernarda , Dulak Jozef , Jozkowicz Alicja
Published: April 2023

Detailed description of methods used in the study with Supplementary Figures legends
Supplementary Information from PTP1B Deficiency Enables the Ability of a High-Fat Diet to Drive the Invasive Character of PTEN-Deficient Prostate Cancers
Authors: Labbé David P. , Uetani Noriko , Vinette Valérie , Lessard Laurent , Aubry Isabelle , Migon Eva , Sirois Jacinthe , Haigh Jody J. , Bégin Louis R. , Trotman Lloyd C. , Paquet Marilène , Tremblay Michel L.
Published: April 2023

Supplementary Materials and Methods, Supplementary Table, Supplementary References and Supplementary Figures S1 to S5
Supplementary Materials and Methods, Supplementary Figures 1 through 9, and Supplementary Tables 1 through 4 from Early Epigenetic Downregulation of microRNA-192 Expression Promotes Pancreatic Cancer Progression
Authors: Botla Sandeep K. , Savant Soniya , Jandaghi Pouria , Bauer Andrea S. , Mücke Oliver , Moskalev Evgeny A. , Neoptolemos John P. , Costello Eithne , Greenhalf William , Scarpa Aldo , Gaida Matthias M. , Büchler Markus W. , Strobel Oliver , Hackert Thilo , Giese Nathalia A. , Augustin Hellmut G. , Hoheisel Jörg D.
Published: April 2023

Supplementary Materials and Methods, Supplementary Figure 1. Representation of the DNA sequence upstream of the miR-192 gene and location of differentially methylated CpG dimers. Supplementary Figure 2. Assessment of in vitro DNA methylation of the CpG island sequence upstream the miR-192 transcription start site (TSS) by agarose gel electrophoresis after digesting with restriction endonuclease AciI. Supplementary Figure 3. Heatmap showing differentially expressed microRNAs in PDAC compared to normal pancreas tissue. Supplementary Figure 4. Heatmap displaying differentially expressed microRNAs in CP compared to normal pancreas tissue. Supplementary Figure 5. Heatmap showing a three-way comparison of microRNA expression in PDAC, CP and healthy pancreas tissues. Supplementary Figure 6. Result of bisulfite sequencing of the CpGI located 2.3 kb upstream of miR-181c. Supplementary Figure 7. Analysis of the effect of 5-azacytidine treatment on miR-192 expression in cell lines BXPC-3 and PANC-1. Supplementary Figure 8. Receiver Operating Characteristic (ROC) curve displaying the ability of miR-192 expression to discriminate between CP and PDAC samples. Supplementary Figure 9. Correlation of miR-192 expression and tumor stage. Supplementary Table 1. List of analyzed patient samples with information about relevant clinical annotations and the types of analysis that were performed with each sample. Supplementary Table 2. List of all DNA primer sequences used in this study. Supplementary Table 3. Summary of the methylation status of the analyzed CpG islands found upstream of the TSSs of the set of 13 miRNAs that exhibited differential expression of a similar nature in both CP and PDAC and had CpGIs within 10 kb upstream their TSSs. Supplementary Table 4. List of predicted miR-192 targets.
Supplemental Tables from CRM1 Inhibition Promotes Cytotoxicity in Ewing Sarcoma Cells by Repressing EWS-FLI1–Dependent IGF-1 Signaling
Authors: Sun Haibo , Lin De-Chen , Cao Qi , Guo Xiao , Marijon Helene , Zhao Zhiqiang , Gery Sigal , Xu Liang , Yang Henry , Pang Brendan , Lee Victor Kwan Min , Lim Huey Jin , Doan Ngan , Said Jonathan W. , Chu Peiguo , Mayakonda Anand , Thomas Tom , Forscher Charles , Baloglu Erkan , Shacham Sharon , Rajalingam Raja , Koeffler H. Phillip
Published: April 2023

Table S1. qRT-PCR primers. Table S2. CRM1 expression among different cancer types patient sample tissues. Table S3. CRM1 Expression among different cancer types ( cancer cell lines from CCLE database). Table S4. patients clinical infomation and h score sorting. Table S5. Overlaps of lists of genes in EW8 and SKES1 under treatment with KPT-330. Table S6. Overlaps of lists of genes by KPT-330 and EWS-FLI1 regulation.
Figure S4 from miR-214 and miR-148b Targeting Inhibits Dissemination of Melanoma and Breast Cancer
Authors: Orso Francesca , Quirico Lorena , Virga Federico , Penna Elisa , Dettori Daniela , Cimino Daniela , Coppo Roberto , Grassi Elena , Elia Angela Rita , Brusa Davide , Deaglio Silvia , Brizzi Maria Felice , Stadler Michael B. , Provero Paolo , Caselle Michele , Taverna Daniela
Published: April 2023

miR-148b expression modulations in melanoma cells
Supplementary Table S2 from Ovarian Cancers Harboring Inactivating Mutations in CDK12 Display a Distinct Genomic Instability Pattern Characterized by Large Tandem Duplications
Authors: Popova Tatiana , Manié Elodie , Boeva Valentina , Battistella Aude , Goundiam Oumou , Smith Nicholas K. , Mueller Christopher R. , Raynal Virginie , Mariani Odette , Sastre-Garau Xavier , Stern Marc-Henri
Published: April 2023

Structural alterations detected by mate-pair WGS in 3 in-house ovarian cancer cases
Supplementary Table S1 from Ovarian Cancers Harboring Inactivating Mutations in CDK12 Display a Distinct Genomic Instability Pattern Characterized by Large Tandem Duplications
Authors: Popova Tatiana , Manié Elodie , Boeva Valentina , Battistella Aude , Goundiam Oumou , Smith Nicholas K. , Mueller Christopher R. , Raynal Virginie , Mariani Odette , Sastre-Garau Xavier , Stern Marc-Henri
Published: April 2023

Table S1A. Summary of alterations detected by WGS in 3 CDK12 mutated tumors; Table S1B. Summary for in-house mate-pair whole genome sequencing (WGS) runs
Supplementary Figure Legends from Tissue Factor Induced by Epithelial–Mesenchymal Transition Triggers a Procoagulant State That Drives Metastasis of Circulating Tumor Cells
Authors: Bourcy Morgane , Suarez-Carmona Meggy , Lambert Justine , Francart Marie-Emilie , Schroeder Hélène , Delierneux Céline , Skrypek Nicolas , Thompson Erik W. , Jérusalem Guy , Berx Geert , Thiry Marc , Blacher Silvia , Hollier Brett G. , Noël Agnès , Oury Cécile , Polette Myriam , Gilles Christine
Published: April 2023

Supplementary Figure Legends
Supplementary Figure 3 from A Small-Molecule Antagonist of the β-Catenin/TCF4 Interaction Blocks the Self-Renewal of Cancer Stem Cells and Suppresses Tumorigenesis
Authors: Fang Liang , Zhu Qionghua , Neuenschwander Martin , Specker Edgar , Wulf-Goldenberg Annika , Weis William I. , von Kries Jens P. , Birchmeier Walter
Published: April 2023

Fig. S3 Inhibition of Wnt signaling by LF3 in colon cancer cells.
Supplementary Figure 2 from A Small-Molecule Antagonist of the β-Catenin/TCF4 Interaction Blocks the Self-Renewal of Cancer Stem Cells and Suppresses Tumorigenesis
Authors: Fang Liang , Zhu Qionghua , Neuenschwander Martin , Specker Edgar , Wulf-Goldenberg Annika , Weis William I. , von Kries Jens P. , Birchmeier Walter
Published: April 2023

Fig. S2 Specific inhibition of Wnt signaling by LF3.
Supplementary Figures 1 through 5 from Identification of the Cell-Intrinsic and -Extrinsic Pathways Downstream of EGFR and IFNγ That Induce PD-L1 Expression in Head and Neck Cancer
Authors: Concha-Benavente Fernando , Srivastava Raghvendra M. , Trivedi Sumita , Lei Yu , Chandran Uma , Seethala Raja R. , Freeman Gordon J. , Ferris Robert L.
Published: April 2023

Supplementary Figure 1. IFNγ-induced PD-L1 upregulation is not PI3K dependent. Supplementary Figure 2. IFNα induces pSTAT1 and HLA class I upregulation. Supplementary figure 3. A. STAT1 and STAT3 siRNA knockdown efficiency. Supplementary figure 4. EGF induces JAK2 phosphorylation. Supplementary figure 5. Knockdown efficiency of STAT1 siRNA in HNC cell lines.
Supplementary Figure S6 from Loss of TGFβ Receptor Type 2 Expression Impairs Estrogen Response and Confers Tamoxifen Resistance
Authors: Busch Susann , Sims Andrew H. , Stål Olle , Fernö Mårten , Landberg Göran
Published: April 2023

Fulvestrant response in MCF7 with TGFBR2-specific knockdown.
Supplementary Figure Legends from NFAT1 Directly Regulates IL8 and MMP3 to Promote Melanoma Tumor Growth and Metastasis
Authors: Shoshan Einav , Braeuer Russell R. , Kamiya Takafumi , Mobley Aaron K. , Huang Li , Vasquez Mayra E. , Velazquez-Torres Guermarie , Chakravarti Nitin , Ivan Cristina , Prieto Victor , Villares Gabriel J. , Bar-Eli Menashe
Published: April 2023

Supplementary Figure Legends
Supplemental Figure Legends from Neutralization of Tumor Acidity Improves Antitumor Responses to Immunotherapy
Authors: Pilon-Thomas Shari , Kodumudi Krithika N. , El-Kenawi Asmaa E. , Russell Shonagh , Weber Amy M. , Luddy Kimberly , Damaghi Mehdi , Wojtkowiak Jonathan W. , Mulé James J. , Ibrahim-Hashim Arig , Gillies Robert J.
Published: April 2023

Supplemental Figure Legends
Supplementary Methods from Balancing Protein Stability and Activity in Cancer: A New Approach for Identifying Driver Mutations Affecting CBL Ubiquitin Ligase Activation
Authors: Li Minghui , Kales Stephen C. , Ma Ke , Shoemaker Benjamin A. , Crespo-Barreto Juan , Cangelosi Andrew L. , Lipkowitz Stanley , Panchenko Anna R.
Published: April 2023

Detailed description of methods for computational modeling and analysis.
Supplementary Methods and References from Comprehensive Ex Vivo Transposon Mutagenesis Identifies Genes That Promote Growth Factor Independence and Leukemogenesis
Authors: Guo Yabin , Updegraff Barrett L. , Park Sunho , Durakoglugil Deniz , Cruz Victoria H. , Maddux Sarah , Hwang Tae Hyun , O'Donnell Kathryn A.
Published: April 2023

Description of additional methods and procedures used in the study. Also includes Supplementary References.
Supplementary Table S10 from Transcriptome Analysis of Recurrently Deregulated Genes across Multiple Cancers Identifies New Pan-Cancer Biomarkers
Authors: Kaczkowski Bogumil , Tanaka Yuji , Kawaji Hideya , Sandelin Albin , Andersson Robin , Itoh Masayoshi , Lassmann Timo , Hayashizaki Yoshihide , Carninci Piero , Forrest Alistair R.R.
Published: April 2023

Gene level overlap between differentially expressed lncRNAs from the FANTOM5 analysis and the miTranscriptome study.
Supplementary Figures 1 through 11 and Supplementary Figure and Video Legends from Modeling Spontaneous Metastasis following Surgery: An In Vivo-In Silico Approach
Authors: Benzekry Sebastien , Tracz Amanda , Mastri Michalis , Corbelli Ryan , Barbolosi Dominique , Ebos John M.L.
Published: April 2023

Supplementary Figure 1. In vitro fit and direct statistical analysis of the xenograft breast data. Supplementary Figure 2. Population fit of the tumor growth data. Supplementary Figure 3. Population fits of the breast xenograft data under different growth theories. Supplementary Figure 4. Population fits of the kidney isograft data under different growth theories. Supplementary Figure 5. Second kidney data set used for fitting the data (resection time = 23 days). Supplementary Figure 6. Individual fits of primary tumor and metastatic burden kinetics. Supplementary Figure 7. Individual fits of primary tumor and metastatic burden kinetics. Supplementary Figure 8. Link between experimental and model survival. Supplementary Figure 9: Surgery benefit on survival and metastatic burden reduction as a function of resection size, for varying values of metastatic potential. Supplementary Figure 10. Population fits of the ortho-surgical metastasis animal models. Supplementary Figure 11. Population fits of the ortho-surgical metastasis animal models.
Fig.S7 from Dual Roles for CXCL4 Chemokines and CXCR3 in Angiogenesis and Invasion of Pancreatic Cancer
Authors: Quemener Cathy , Baud Jessica , Boyé Kevin , Dubrac Alexandre , Billottet Clotilde , Soulet Fabienne , Darlot Florence , Dumartin Laurent , Sire Marie , Grepin Renaud , Daubon Thomas , Rayne Fabienne , Wodrich Harald , Couvelard Anne , Pineau Raphael , Schilling Martin , Castronovo Vincent , Sue Shih-Che , Clarke Kim , Lomri Abderrahim , Khatib Abdel-Majid , Hagedorn Martin , Prats Hervé , Bikfalvi Andreas
Published: April 2023

Characterization of PECAM-1 expression in pancreatic tumours
Fig.S6 from Dual Roles for CXCL4 Chemokines and CXCR3 in Angiogenesis and Invasion of Pancreatic Cancer
Authors: Quemener Cathy , Baud Jessica , Boyé Kevin , Dubrac Alexandre , Billottet Clotilde , Soulet Fabienne , Darlot Florence , Dumartin Laurent , Sire Marie , Grepin Renaud , Daubon Thomas , Rayne Fabienne , Wodrich Harald , Couvelard Anne , Pineau Raphael , Schilling Martin , Castronovo Vincent , Sue Shih-Che , Clarke Kim , Lomri Abderrahim , Khatib Abdel-Majid , Hagedorn Martin , Prats Hervé , Bikfalvi Andreas
Published: April 2023

In vivo characterization of the MabL1 antibody
Fig.S4 from Dual Roles for CXCL4 Chemokines and CXCR3 in Angiogenesis and Invasion of Pancreatic Cancer
Authors: Quemener Cathy , Baud Jessica , Boyé Kevin , Dubrac Alexandre , Billottet Clotilde , Soulet Fabienne , Darlot Florence , Dumartin Laurent , Sire Marie , Grepin Renaud , Daubon Thomas , Rayne Fabienne , Wodrich Harald , Couvelard Anne , Pineau Raphael , Schilling Martin , Castronovo Vincent , Sue Shih-Che , Clarke Kim , Lomri Abderrahim , Khatib Abdel-Majid , Hagedorn Martin , Prats Hervé , Bikfalvi Andreas
Published: April 2023

CXCR3 gene expression analysis
Fig.S1 from Dual Roles for CXCL4 Chemokines and CXCR3 in Angiogenesis and Invasion of Pancreatic Cancer
Authors: Quemener Cathy , Baud Jessica , Boyé Kevin , Dubrac Alexandre , Billottet Clotilde , Soulet Fabienne , Darlot Florence , Dumartin Laurent , Sire Marie , Grepin Renaud , Daubon Thomas , Rayne Fabienne , Wodrich Harald , Couvelard Anne , Pineau Raphael , Schilling Martin , Castronovo Vincent , Sue Shih-Che , Clarke Kim , Lomri Abderrahim , Khatib Abdel-Majid , Hagedorn Martin , Prats Hervé , Bikfalvi Andreas
Published: April 2023

Expression Analysis of CXCL4L1 in human pancreatic tissue
Supplementary Figure S8 from STAT3/IRF1 Pathway Activation Sensitizes Cervical Cancer Cells to Chemotherapeutic Drugs
Authors: Walch-Rückheim Barbara , Pahne-Zeppenfeld Jennifer , Fischbach Jil , Wickenhauser Claudia , Horn Lars Christian , Tharun Lars , Büttner Reinhard , Mallmann Peter , Stern Peter , Kim Yoo-Jin , Bohle Rainer Maria , Rübe Christian , Ströder Russalina , Juhasz-Böss Ingolf , Solomayer Erich-Franz , Smola Sigrun
Published: April 2023

HeLa cells were transfected with 10 pmol/1.5 x 105 cells of human IRF1-specific siRNA (#8) or mock siRNA.
Supplementary Figure S2 from STAT3/IRF1 Pathway Activation Sensitizes Cervical Cancer Cells to Chemotherapeutic Drugs
Authors: Walch-Rückheim Barbara , Pahne-Zeppenfeld Jennifer , Fischbach Jil , Wickenhauser Claudia , Horn Lars Christian , Tharun Lars , Büttner Reinhard , Mallmann Peter , Stern Peter , Kim Yoo-Jin , Bohle Rainer Maria , Rübe Christian , Ströder Russalina , Juhasz-Böss Ingolf , Solomayer Erich-Franz , Smola Sigrun
Published: April 2023

Low constitutive STAT3 activation in cervical cancer cell lines but not in primary cervical carcinoma cells or exocervical keratinocytes after prolonged exposure of Western blot analysis.
Supplementary Table S6 from HBXIP and LSD1 Scaffolded by lncRNA Hotair Mediate Transcriptional Activation by c-Myc
Authors: Li Yinghui , Wang Zhen , Shi Hui , Li Hang , Li Leilei , Fang Runping , Cai Xiaoli , Liu Bowen , Zhang Xiaodong , Ye Lihong
Published: April 2023

Enrichment for c-Myc targets which could not be occupied by HBXIP.
Supplementary Figure Legends from STAT3/IRF1 Pathway Activation Sensitizes Cervical Cancer Cells to Chemotherapeutic Drugs
Authors: Walch-Rückheim Barbara , Pahne-Zeppenfeld Jennifer , Fischbach Jil , Wickenhauser Claudia , Horn Lars Christian , Tharun Lars , Büttner Reinhard , Mallmann Peter , Stern Peter , Kim Yoo-Jin , Bohle Rainer Maria , Rübe Christian , Ströder Russalina , Juhasz-Böss Ingolf , Solomayer Erich-Franz , Smola Sigrun
Published: April 2023

Legends to Supplementary Figures S1-S8.
Supplementary Table S1 from HBXIP and LSD1 Scaffolded by lncRNA Hotair Mediate Transcriptional Activation by c-Myc
Authors: Li Yinghui , Wang Zhen , Shi Hui , Li Hang , Li Leilei , Fang Runping , Cai Xiaoli , Liu Bowen , Zhang Xiaodong , Ye Lihong
Published: April 2023

The siRNAs used in this study.
Supplementary Figure S5 from HBXIP and LSD1 Scaffolded by lncRNA Hotair Mediate Transcriptional Activation by c-Myc
Authors: Li Yinghui , Wang Zhen , Shi Hui , Li Hang , Li Leilei , Fang Runping , Cai Xiaoli , Liu Bowen , Zhang Xiaodong , Ye Lihong
Published: April 2023

Hotair is required for the activation of c-Myc target genes.
Supplementary Figure S2 from HBXIP and LSD1 Scaffolded by lncRNA Hotair Mediate Transcriptional Activation by c-Myc
Authors: Li Yinghui , Wang Zhen , Shi Hui , Li Hang , Li Leilei , Fang Runping , Cai Xiaoli , Liu Bowen , Zhang Xiaodong , Ye Lihong
Published: April 2023

HBXIP is required for the up-regulation of Cyclin A, eIF4E and LDHA.
Supplementary figure legends from STK11/LKB1 Deficiency Promotes Neutrophil Recruitment and Proinflammatory Cytokine Production to Suppress T-cell Activity in the Lung Tumor Microenvironment
Authors: Koyama Shohei , Akbay Esra A. , Li Yvonne Y. , Aref Amir R. , Skoulidis Ferdinandos , Herter-Sprie Grit S. , Buczkowski Kevin A. , Liu Yan , Awad Mark M. , Denning Warren L. , Diao Lixia , Wang Jing , Parra-Cuentas Edwin R. , Wistuba Ignacio I. , Soucheray Margaret , Thai Tran , Asahina Hajime , Kitajima Shunsuke , Altabef Abigail , Cavanaugh Jillian D. , Rhee Kevin , Gao Peng , Zhang Haikuo , Fecci Peter E. , Shimamura Takeshi , Hellmann Matthew D. , Heymach John V. , Hodi F. Stephen , Freeman Gordon J. , Barbie David A. , Dranoff Glenn , Hammerman Peter S. , Wong Kwok-Kin
Published: April 2023

This file contains information regarding the figure legends and detailed description for the supplementary figures.
Supplementary Figure S1 from HBXIP and LSD1 Scaffolded by lncRNA Hotair Mediate Transcriptional Activation by c-Myc
Authors: Li Yinghui , Wang Zhen , Shi Hui , Li Hang , Li Leilei , Fang Runping , Cai Xiaoli , Liu Bowen , Zhang Xiaodong , Ye Lihong
Published: April 2023

The common targets of HBXIP and c-Myc are involved in the cell cycle and ribosome biosynthesis pathways.
Supplementary Figure S9 from Eva1 Maintains the Stem-like Character of Glioblastoma-Initiating Cells by Activating the Noncanonical NF-κB Signaling Pathway
Authors: Ohtsu Naoki , Nakatani Yuka , Yamashita Daisuke , Ohue Shiro , Ohnishi Takanori , Kondo Toru
Published: April 2023

Eva1+GBM cells associate with RORγT+ Th17 cells.
Supplementary Figure S6 from Eva1 Maintains the Stem-like Character of Glioblastoma-Initiating Cells by Activating the Noncanonical NF-κB Signaling Pathway
Authors: Ohtsu Naoki , Nakatani Yuka , Yamashita Daisuke , Ohue Shiro , Ohnishi Takanori , Kondo Toru
Published: April 2023

Eva1 expression level affects the NF-κB activity that is indispensable for the proliferation of NSCL61.
Supplementary_Scr autophagy from Neuropilin-2 Regulates Endosome Maturation and EGFR Trafficking to Support Cancer Cell Pathobiology
Authors: Dutta Samikshan , Roy Sohini , Polavaram Navatha S. , Stanton Marissa J. , Zhang Heyu , Bhola Tanvi , Hönscheid Pia , Donohue Terrence M. , Band Hamid , Batra Surinder K. , Muders Michael H. , Datta Kaustubh
Published: April 2023

Autophagy_live cell
Supplementary Fig 5 from Neuropilin-2 Regulates Endosome Maturation and EGFR Trafficking to Support Cancer Cell Pathobiology
Authors: Dutta Samikshan , Roy Sohini , Polavaram Navatha S. , Stanton Marissa J. , Zhang Heyu , Bhola Tanvi , Hönscheid Pia , Donohue Terrence M. , Band Hamid , Batra Surinder K. , Muders Michael H. , Datta Kaustubh
Published: April 2023

Analysis of late endosomal protein PIKfyve
Supplementary Fig 2 from Neuropilin-2 Regulates Endosome Maturation and EGFR Trafficking to Support Cancer Cell Pathobiology
Authors: Dutta Samikshan , Roy Sohini , Polavaram Navatha S. , Stanton Marissa J. , Zhang Heyu , Bhola Tanvi , Hönscheid Pia , Donohue Terrence M. , Band Hamid , Batra Surinder K. , Muders Michael H. , Datta Kaustubh
Published: April 2023

Overexpression of NRP2 or knockdown of WDFY1 in NRP2 depleted cell recovers the early endosomal structure
Supplementary Table S1 from Rapalogs Efficacy Relies on the Modulation of Antitumor T-cell Immunity
Authors: Beziaud Laurent , Mansi Laura , Ravel Patrice , Marie-Joseph Elodie Lauret , Laheurte Caroline , Rangan Laurie , Bonnefoy Francis , Pallandre Jean-René , Boullerot Laura , Gamonet Clémentine , Vrecko Sindy , Queiroz Lise , Maurina Tristan , Mouillet Guillaume , Hon Thierry Nguyen Tan , Curtit Elsa , Royer Bernard , Gaugler Béatrice , Bayry Jagadeesh , Tartour Eric , Thiery-Vuillemin Antoine , Pivot Xavier , Borg Christophe , Godet Yann , Adotévi Olivier
Published: April 2023

This file contains the patients characteristics: Supplementary table 1
Supplementary Table S1 from Upregulation of Cytosolic Phosphoenolpyruvate Carboxykinase Is a Critical Metabolic Event in Melanoma Cells That Repopulate Tumors
Authors: Li Yong , Luo Shunqun , Ma Ruihua , Liu Jing , Xu Pingwei , Zhang Huafeng , Tang Ke , Ma Jingwei , Zhang Yi , Liang Xiaoyu , Sun Yanling , Ji Tiantian , Wang Ning , Huang Bo
Published: April 2023

Supplementary Table S1. List of RT-PCR primers used.
Supplementary Figure S4 from Rapalogs Efficacy Relies on the Modulation of Antitumor T-cell Immunity
Authors: Beziaud Laurent , Mansi Laura , Ravel Patrice , Marie-Joseph Elodie Lauret , Laheurte Caroline , Rangan Laurie , Bonnefoy Francis , Pallandre Jean-René , Boullerot Laura , Gamonet Clémentine , Vrecko Sindy , Queiroz Lise , Maurina Tristan , Mouillet Guillaume , Hon Thierry Nguyen Tan , Curtit Elsa , Royer Bernard , Gaugler Béatrice , Bayry Jagadeesh , Tartour Eric , Thiery-Vuillemin Antoine , Pivot Xavier , Borg Christophe , Godet Yann , Adotévi Olivier
Published: April 2023

This file contains the two groups statistic model: Supplementary figure 4
Supplementary Figure S3 from Upregulation of Cytosolic Phosphoenolpyruvate Carboxykinase Is a Critical Metabolic Event in Melanoma Cells That Repopulate Tumors
Authors: Li Yong , Luo Shunqun , Ma Ruihua , Liu Jing , Xu Pingwei , Zhang Huafeng , Tang Ke , Ma Jingwei , Zhang Yi , Liang Xiaoyu , Sun Yanling , Ji Tiantian , Wang Ning , Huang Bo
Published: April 2023

Supplementary Figure S3. Fructose-1,6-bisphosphatase (FBP1) and glucose-6- phosphatase (G6Pase) were not expressed in B16 TRCs and PCK1 knockdown had no effect on glucose transporter 1 (GLUT1) expression and membrane localization.
Supplementary Data from MCPIP1 Selectively Destabilizes Transcripts Associated with an Antiapoptotic Gene Expression Program in Breast Cancer Cells That Can Elicit Complete Tumor Regression
Authors: Lu Wenbao , Ning Huan , Gu Ling , Peng Hui , Wang Qinghong , Hou Rong , Fu Mingui , Hoft Daniel F. , Liu Jianguo
Published: April 2023

Supplementary Data from MCPIP1 Selectively Destabilizes Transcripts Associated with an Antiapoptotic Gene Expression Program in Breast Cancer Cells That Can Elicit Complete Tumor Regression
Supplementary Methods and References from Exosomes Derived from Hypoxic Oral Squamous Cell Carcinoma Cells Deliver miR-21 to Normoxic Cells to Elicit a Prometastatic Phenotype
Authors: Li Ling , Li Chao , Wang Shaoxin , Wang Zhaohui , Jiang Jian , Wang Wei , Li Xiaoxia , Chen Jin , Liu Kun , Li Chunhua , Zhu Guiquan
Published: April 2023

Description of additional methods and procedures used in the study. Also includes Supplementary References.
Suppl. Figure 2 from Non–Small Cell Lung Cancer Cells Acquire Resistance to the ALK Inhibitor Alectinib by Activating Alternative Receptor Tyrosine Kinases
Authors: Isozaki Hideko , Ichihara Eiki , Takigawa Nagio , Ohashi Kadoaki , Ochi Nobuaki , Yasugi Masayuki , Ninomiya Takashi , Yamane Hiromichi , Hotta Katsuyuki , Sakai Katsuya , Matsumoto Kunio , Hosokawa Shinobu , Bessho Akihiro , Sendo Toshiaki , Tanimoto Mitsune , Kiura Katsuyuki
Published: April 2023

Identification by STR analysis
Suppl. Figure 1 from Non–Small Cell Lung Cancer Cells Acquire Resistance to the ALK Inhibitor Alectinib by Activating Alternative Receptor Tyrosine Kinases
Authors: Isozaki Hideko , Ichihara Eiki , Takigawa Nagio , Ohashi Kadoaki , Ochi Nobuaki , Yasugi Masayuki , Ninomiya Takashi , Yamane Hiromichi , Hotta Katsuyuki , Sakai Katsuya , Matsumoto Kunio , Hosokawa Shinobu , Bessho Akihiro , Sendo Toshiaki , Tanimoto Mitsune , Kiura Katsuyuki
Published: April 2023

Establishing a method for the alectinib-resistant cell lines and morphological observations
Table S1 from Pharmacological Inhibition of the Histone Lysine Demethylase KDM1A Suppresses the Growth of Multiple Acute Myeloid Leukemia Subtypes
Authors: McGrath John P. , Williamson Kaylyn E. , Balasubramanian Srividya , Odate Shobu , Arora Shilpi , Hatton Charlie , Edwards Thomas M. , O'Brien Thomas , Magnuson Steven , Stokoe David , Daniels Danette L. , Bryant Barbara M. , Trojer Patrick
Published: April 2023

Supplementary Table S1: Gene expression changes in Kasumi-1 and SKNO-1 cells upon treatment with RN-1, GSK690 and GSK690* for 24 and 72 hours compared to DMSO-treated controls
Supplemental Table S2 from Molecular Pathology of Patient Tumors, Patient-Derived Xenografts, and Cancer Cell Lines
Authors: Guo Sheng , Qian Wubin , Cai Jie , Zhang Likun , Wery Jean-Pierre , Li Qi-Xiang
Published: April 2023

PDX list
Supplementary Figure S3 from Oncogenic Mutation of AIMP2/p38 Inhibits Its Tumor-Suppressive Interaction with Smurf2
Authors: Kim Dae Gyu , Lee Jin Young , Lee Ji-Hyun , Cho Ha Yeon , Kang Beom Sik , Jang Song-Yee , Kim Myung Hee , Guo Min , Han Jung Min , Kim Seong-Jin , Kim Sunghoon
Published: April 2023

The effect of AIMP2 on nuclear export of Smurf2 via CRM1.
Figure S2 from A Three-Dimensional Organoid Culture System Derived from Human Glioblastomas Recapitulates the Hypoxic Gradients and Cancer Stem Cell Heterogeneity of Tumors Found In Vivo
Authors: Hubert Christopher G. , Rivera Maricruz , Spangler Lisa C. , Wu Qiulian , Mack Stephen C. , Prager Briana C. , Couce Marta , McLendon Roger E. , Sloan Andrew E. , Rich Jeremy N.
Published: April 2023

Growth of a brain metastasis sample in organoid format.
Supplementary Figure 1 from Tyrosine Phosphatase PTPRJ/DEP-1 Is an Essential Promoter of Vascular Permeability, Angiogenesis, and Tumor Progression
Authors: Fournier Patrick , Dussault Sylvie , Fusco Alfredo , Rivard Alain , Royal Isabelle
Published: April 2023

Fig. S1. VEGF expression in tumors collected from WT or DEP-1 KO mice.
Supplemental Table 1: Summary of multivariate linear regression for ECTI contour combined with basal nuclear density or basal nuclear area. from Remodeling of the Epithelial–Connective Tissue Interface in Oral Epithelial Dysplasia as Visualized by Noninvasive 3D Imaging
Authors: Pal Rahul , Shilagard Tuya , Yang Jinping , Villarreal Paula , Brown Tyra , Qiu Suimin , McCammon Susan , Resto Vicente , Vargas Gracie
Published: April 2023

Multivariate linear regression showed improved AUC for basal nuclear density and basal nuclear area when combined with ECTI contour.
Supplemental Figure 1: Spatial variation and reduction of collagen density in OED. from Remodeling of the Epithelial–Connective Tissue Interface in Oral Epithelial Dysplasia as Visualized by Noninvasive 3D Imaging
Authors: Pal Rahul , Shilagard Tuya , Yang Jinping , Villarreal Paula , Brown Tyra , Qiu Suimin , McCammon Susan , Resto Vicente , Vargas Gracie
Published: April 2023

a) Spatial variation of collagen density is shown by reduced SHG signal in the compromised LP beneath neoplastic foci relative to neighboring LP outside the foci. b) Average collagen density in control, inflammation and OED. "*" and "**" represent p< 0.05 and p<0.01 respectively.
Supplementary materials and methods, Supplementary Table 1, and Supplementary Figure Legends from MIF Maintains the Tumorigenic Capacity of Brain Tumor–Initiating Cells by Directly Inhibiting p53
Authors: Fukaya Raita , Ohta Shigeki , Yaguchi Tomonori , Matsuzaki Yumi , Sugihara Eiji , Okano Hideyuki , Saya Hideyuki , Kawakami Yutaka , Kawase Takeshi , Yoshida Kazunari , Toda Masahiro
Published: April 2023

Supplementary materials and methods, Supplementary Table 1, and Supplementary Figure Legends
Supplementary Figure S6 from MIF Maintains the Tumorigenic Capacity of Brain Tumor–Initiating Cells by Directly Inhibiting p53
Authors: Fukaya Raita , Ohta Shigeki , Yaguchi Tomonori , Matsuzaki Yumi , Sugihara Eiji , Okano Hideyuki , Saya Hideyuki , Kawakami Yutaka , Kawase Takeshi , Yoshida Kazunari , Toda Masahiro
Published: April 2023

Immunohistochemical study of the mouse brain tumor in therapeutic model by lenti-shMIF.
Supplementary Figure S1-5 from MIF Maintains the Tumorigenic Capacity of Brain Tumor–Initiating Cells by Directly Inhibiting p53
Authors: Fukaya Raita , Ohta Shigeki , Yaguchi Tomonori , Matsuzaki Yumi , Sugihara Eiji , Okano Hideyuki , Saya Hideyuki , Kawakami Yutaka , Kawase Takeshi , Yoshida Kazunari , Toda Masahiro
Published: April 2023

Supplementary Figure S1. Gene expression of CD74 and CXCR4.Supplementary Figure S2. TP53 gene silencing in U87MG and T98G cells. Supplementary Figure S3. Effects of MIF gene silencing on p21 and BAX reporter gene expression in T98G cells.Supplementary Figure S4. Combined effects of MIF and TP53 gene silencing on cell proliferation in hG008 BTICs.Supplementary Figure S5. Gene expression, p53 protein localization and apoptosis by MIF gene silencing in BTICs.
Supplemental Figure 6 from Nucleolin Promotes Heat Shock–Associated Translation of VEGF-D to Promote Tumor Lymphangiogenesis
Authors: Morfoisse Florent , Tatin Florence , Hantelys Fransky , Adoue Aurelien , Helfer Anne-Catherine , Cassant-Sourdy Stephanie , Pujol Françoise , Gomez-Brouchet Anne , Ligat Laetitia , Lopez Frederic , Pyronnet Stephane , Courty Jose , Guillermet-Guibert Julie , Marzi Stefano , Schneider Robert J. , Prats Anne-Catherine , Garmy-Susini Barbara H.
Published: April 2023

Figure S6. Polysome profiling of 4T1 cells
Figure S6 from Nutritional Stress Induced by Tryptophan-Degrading Enzymes Results in ATF4-Dependent Reprogramming of the Amino Acid Transporter Profile in Tumor Cells
Authors: Timosenko Elina , Ghadbane Hemza , Silk Jonathan D. , Shepherd Dawn , Gileadi Uzi , Howson Lauren J. , Laynes Robert , Zhao Qi , Strausberg Robert L. , Olsen Lars R. , Taylor Stephen , Buffa Francesca M. , Boyd Richard , Cerundolo Vincenzo
Published: April 2023

In vivo and in silico analyses of IDO and SLC1A5 expression in primary mouse and human tumors.
Supplemental Figure 3 from Nucleolin Promotes Heat Shock–Associated Translation of VEGF-D to Promote Tumor Lymphangiogenesis
Authors: Morfoisse Florent , Tatin Florence , Hantelys Fransky , Adoue Aurelien , Helfer Anne-Catherine , Cassant-Sourdy Stephanie , Pujol Françoise , Gomez-Brouchet Anne , Ligat Laetitia , Lopez Frederic , Pyronnet Stephane , Courty Jose , Guillermet-Guibert Julie , Marzi Stefano , Schneider Robert J. , Prats Anne-Catherine , Garmy-Susini Barbara H.
Published: April 2023

Figure S3. Podoplanin staining of lymphatic vessels
Figure S3 from Nutritional Stress Induced by Tryptophan-Degrading Enzymes Results in ATF4-Dependent Reprogramming of the Amino Acid Transporter Profile in Tumor Cells
Authors: Timosenko Elina , Ghadbane Hemza , Silk Jonathan D. , Shepherd Dawn , Gileadi Uzi , Howson Lauren J. , Laynes Robert , Zhao Qi , Strausberg Robert L. , Olsen Lars R. , Taylor Stephen , Buffa Francesca M. , Boyd Richard , Cerundolo Vincenzo
Published: April 2023

The effect of aryl hydrocarbon receptor agonists on SLC1A5 expression in tumor cells.
Supplementary Table S4: from Cancer Therapy Directed by Comprehensive Genomic Profiling: A Single Center Study
Authors: Wheler Jennifer J. , Janku Filip , Naing Aung , Li Yali , Stephen Bettzy , Zinner Ralph , Subbiah Vivek , Fu Siqing , Karp Daniel , Falchook Gerald S. , Tsimberidou Apostolia M. , Piha-Paul Sarina , Anderson Roosevelt , Ke Danxia , Miller Vincent , Yelensky Roman , Lee J. Jack , Hong David S. , Kurzrock Razelle
Published: April 2023

Comparison of TTF1 between groups
Supplemental Table 4 from Hematopoietic Age at Onset of Triple-Negative Breast Cancer Dictates Disease Aggressiveness and Progression
Authors: Marsh Timothy , Wong Irene , Sceneay Jaclyn , Barakat Amey , Qin Yuanbo , Sjödin Andreas , Alspach Elise , Nilsson Björn , Stewart Sheila A. , McAllister Sandra S.
Published: April 2023

PCR primer sequences
Supplementary Table S1: from Cancer Therapy Directed by Comprehensive Genomic Profiling: A Single Center Study
Authors: Wheler Jennifer J. , Janku Filip , Naing Aung , Li Yali , Stephen Bettzy , Zinner Ralph , Subbiah Vivek , Fu Siqing , Karp Daniel , Falchook Gerald S. , Tsimberidou Apostolia M. , Piha-Paul Sarina , Anderson Roosevelt , Ke Danxia , Miller Vincent , Yelensky Roman , Lee J. Jack , Hong David S. , Kurzrock Razelle
Published: April 2023

Next generation sequencing gene list
Supplemental Table 3 from Hematopoietic Age at Onset of Triple-Negative Breast Cancer Dictates Disease Aggressiveness and Progression
Authors: Marsh Timothy , Wong Irene , Sceneay Jaclyn , Barakat Amey , Qin Yuanbo , Sjödin Andreas , Alspach Elise , Nilsson Björn , Stewart Sheila A. , McAllister Sandra S.
Published: April 2023

Detailed information for all antibodies
supplemental table 1 from The Ribonucleic Complex HuR-MALAT1 Represses CD133 Expression and Suppresses Epithelial–Mesenchymal Transition in Breast Cancer
Authors: Latorre Elisa , Carelli Stephana , Raimondi Ivan , D'Agostino Vito , Castiglioni Ilaria , Zucal Chiara , Moro Giacomina , Luciani Andrea , Ghilardi Giorgio , Monti Eleonora , Inga Alberto , Di Giulio Anna Maria , Gorio Alfredo , Provenzani Alessandro
Published: April 2023

Clinical characteristics of the tumor specimens form which primary cancer stem cells were isolated.
Supplemental Materials, Methods, and References from Hematopoietic Age at Onset of Triple-Negative Breast Cancer Dictates Disease Aggressiveness and Progression
Authors: Marsh Timothy , Wong Irene , Sceneay Jaclyn , Barakat Amey , Qin Yuanbo , Sjödin Andreas , Alspach Elise , Nilsson Björn , Stewart Sheila A. , McAllister Sandra S.
Published: April 2023

Detailed information for controls and experiments to support primary data
Supplemental Figures 1-7 from Hematopoietic Age at Onset of Triple-Negative Breast Cancer Dictates Disease Aggressiveness and Progression
Authors: Marsh Timothy , Wong Irene , Sceneay Jaclyn , Barakat Amey , Qin Yuanbo , Sjödin Andreas , Alspach Elise , Nilsson Björn , Stewart Sheila A. , McAllister Sandra S.
Published: April 2023

Controls and results from additional experiments to support primary data
supplemental figure 5 from The Ribonucleic Complex HuR-MALAT1 Represses CD133 Expression and Suppresses Epithelial–Mesenchymal Transition in Breast Cancer
Authors: Latorre Elisa , Carelli Stephana , Raimondi Ivan , D'Agostino Vito , Castiglioni Ilaria , Zucal Chiara , Moro Giacomina , Luciani Andrea , Ghilardi Giorgio , Monti Eleonora , Inga Alberto , Di Giulio Anna Maria , Gorio Alfredo , Provenzani Alessandro
Published: April 2023

Evaluation of CHART protein fraction.
Supplementary Materials and Methods from The CARMA3–Bcl10–MALT1 Signalosome Drives NFκB Activation and Promotes Aggressiveness in Angiotensin II Receptor–Positive Breast Cancer
Authors: Ekambaram Prasanna , Lee Jia-Ying (Lloyd) , Hubel Nathaniel E. , Hu Dong , Yerneni Saigopalakrishna , Campbell Phil G. , Pollock Netanya , Klei Linda R. , Concel Vincent J. , Delekta Phillip C. , Chinnaiyan Arul M. , Tomlins Scott A. , Rhodes Daniel R. , Priedigkeit Nolan , Lee Adrian V. , Oesterreich Steffi , McAllister-Lucas Linda M. , Lucas Peter C.
Published: April 2023

Supplementary Materials and Methods
supplemental figure 1 from The Ribonucleic Complex HuR-MALAT1 Represses CD133 Expression and Suppresses Epithelial–Mesenchymal Transition in Breast Cancer
Authors: Latorre Elisa , Carelli Stephana , Raimondi Ivan , D'Agostino Vito , Castiglioni Ilaria , Zucal Chiara , Moro Giacomina , Luciani Andrea , Ghilardi Giorgio , Monti Eleonora , Inga Alberto , Di Giulio Anna Maria , Gorio Alfredo , Provenzani Alessandro
Published: April 2023

Quality controls on HuR and MALAT1 silencing
Supplementary Figure S2 from The CARMA3–Bcl10–MALT1 Signalosome Drives NFκB Activation and Promotes Aggressiveness in Angiotensin II Receptor–Positive Breast Cancer
Authors: Ekambaram Prasanna , Lee Jia-Ying (Lloyd) , Hubel Nathaniel E. , Hu Dong , Yerneni Saigopalakrishna , Campbell Phil G. , Pollock Netanya , Klei Linda R. , Concel Vincent J. , Delekta Phillip C. , Chinnaiyan Arul M. , Tomlins Scott A. , Rhodes Daniel R. , Priedigkeit Nolan , Lee Adrian V. , Oesterreich Steffi , McAllister-Lucas Linda M. , Lucas Peter C.
Published: April 2023

Constitutive and Ang II-induced NFkB activity in BT549 and ZR75-AGTR1 cells; dependence on AGTR1 and the canonical IKK complex.
Supp Fig 3 from Pexmetinib: A Novel Dual Inhibitor of Tie2 and p38 MAPK with Efficacy in Preclinical Models of Myelodysplastic Syndromes and Acute Myeloid Leukemia
Authors: Bachegowda Lohith , Morrone Kerry , Winski Shannon L. , Mantzaris Ioannis , Bartenstein Matthias , Ramachandra Nandini , Giricz Orsi , Sukrithan Vineeth , Nwankwo George , Shahnaz Samira , Bhagat Tushar D. , Bhattacharyya Sanchari , Assal Amer , Shastri Aditi , Gordon-Mitchell Shanisha , Pellagatti Andrea , Boultwood Jacqueline , Schinke Carolina , Yu Yiting , Guha Chandan , Rizzi James , Garrus Jennifer , Brown Suzy , Wollenberg Lance , Hogeland Grant , Wright Dale , Munson Mark , Rodriguez Mareli , Gross Stefan , Chantry David , Zou Yiyu , Platanias Leonidas C. , Burgess Laurence E. , Pradhan Kith , Steidl Ulrich , Verma Amit
Published: April 2023

Proposed model of efficacy of dual inhibitor of Tie2 and p38 MAPK in MDS and AML
Supp Fig 1 from Pexmetinib: A Novel Dual Inhibitor of Tie2 and p38 MAPK with Efficacy in Preclinical Models of Myelodysplastic Syndromes and Acute Myeloid Leukemia
Authors: Bachegowda Lohith , Morrone Kerry , Winski Shannon L. , Mantzaris Ioannis , Bartenstein Matthias , Ramachandra Nandini , Giricz Orsi , Sukrithan Vineeth , Nwankwo George , Shahnaz Samira , Bhagat Tushar D. , Bhattacharyya Sanchari , Assal Amer , Shastri Aditi , Gordon-Mitchell Shanisha , Pellagatti Andrea , Boultwood Jacqueline , Schinke Carolina , Yu Yiting , Guha Chandan , Rizzi James , Garrus Jennifer , Brown Suzy , Wollenberg Lance , Hogeland Grant , Wright Dale , Munson Mark , Rodriguez Mareli , Gross Stefan , Chantry David , Zou Yiyu , Platanias Leonidas C. , Burgess Laurence E. , Pradhan Kith , Steidl Ulrich , Verma Amit
Published: April 2023

Heatmap and GSEA analysis of Angpt1 high and low expressing MDS samples
Supplementary video from Extracellular Vesicles from High-Grade Glioma Exchange Diverse Pro-oncogenic Signals That Maintain Intratumoral Heterogeneity
Authors: Ricklefs Franz , Mineo Marco , Rooj Arun K. , Nakano Ichiro , Charest Al , Weissleder Ralph , Breakefield Xandra O. , Chiocca E. Antonio , Godlewski Jakub , Bronisz Agnieszka
Published: April 2023

M and P GSCs display distinct intra-spherical organization in vitro. Representative time lapse movie
Figure S3 from Reduced Expression of Histone Methyltransferases KMT2C and KMT2D Correlates with Improved Outcome in Pancreatic Ductal Adenocarcinoma
Authors: Dawkins Joshua B.N. , Wang Jun , Maniati Eleni , Heward James A. , Koniali Lola , Kocher Hemant M. , Martin Sarah A. , Chelala Claude , Balkwill Frances R. , Fitzgibbon Jude , Grose Richard P.
Published: April 2023

Confirmation of gene knockdown at the exon level, and correlations between the multiple siRNAs, for both KMT2C and KMT2D within the RNA-seq data.
Figure S1 from Reduced Expression of Histone Methyltransferases KMT2C and KMT2D Correlates with Improved Outcome in Pancreatic Ductal Adenocarcinoma
Authors: Dawkins Joshua B.N. , Wang Jun , Maniati Eleni , Heward James A. , Koniali Lola , Kocher Hemant M. , Martin Sarah A. , Chelala Claude , Balkwill Frances R. , Fitzgibbon Jude , Grose Richard P.
Published: April 2023

Analysis of PDAC tumors from the ICGA and TCGA datasets suggests that lower KMT2C and KMT2D expression may correlate with improved patient survival.
Supplementary Table S2 from Mutant p53 Promotes Epithelial Ovarian Cancer by Regulating Tumor Differentiation, Metastasis, and Responsiveness to Steroid Hormones
Authors: Ren Yi A. , Mullany Lisa K. , Liu Zhilin , Herron Alan J. , Wong Kwong-Kwok , Richards JoAnne S.
Published: April 2023

Real-time PCR primer set sequences.