bluuebunny/crossref_metadata_2025 huggingface dataset:
Metabolic Profiling of Glucose-Fed Metabolically Active Resting Zymomonas mobilis Strains
Authors: Fuchino Katsuya , Kalnenieks Uldis , Rutkis Reinis , Grube Mara , Bruheim Per
Published: February 2020

Zymomonas mobilis is the most efficient bacterial ethanol producer and its physiology is potentially applicable to industrial-scale bioethanol production. However, compared to other industrially important microorganisms, the Z. mobilis metabolome and adaptation to various nutritional and genetic perturbations have been poorly characterized. For rational metabolic engineering, it is essential to understand how central metabolism and intracellular redox balance are maintained in Z. mobilis under various conditions. In this study, we applied quantitative mass spectrometry-based metabolomics to explore how glucose-fed non-growing Z. mobilis Zm6 cells metabolically adapt to change of oxygen availability. Mutants partially impaired in ethanol synthesis (Zm6 adhB) or oxidative stress response (Zm6 cat) were also examined. Distinct patterns of adaptation of central metabolite pools due to the change in cultivation condition and between the mutants and Zm6 reference strain were observed. Decreased NADH/NAD ratio under aerobic incubation corresponded to higher concentrations of the phosphorylated glycolytic intermediates, in accordance with predictions of the kinetic model of Entner–Doudoroff pathway. The effects on the metabolite pools of aerobic to anaerobic transition were similar in the mutants, yet less pronounced. The present data on metabolic plasticity of non-growing Z. mobilis cells will facilitate the further metabolic engineering of the respective strains and their application as biocatalysts.
Numerical Simulation of Boundary-Driven Acoustic Streaming in Microfluidic Channels with Circular Cross-Sections
Authors: Lei Junjun , Cheng Feng , Li Kemin
Published: February 2020

While acoustic streaming patterns in microfluidic channels with rectangular cross-sections have been widely shown in the literature, boundary-driven streaming fields in non-rectangular channels have not been well studied. In this paper, a two-dimensional numerical model was developed to simulate the boundary-driven streaming fields on cross-sections of cylindrical fluid channels. Firstly, the linear acoustic pressure fields at the resonant frequencies were solved from the Helmholtz equation. Subsequently, the outer boundary-driven streaming fields in the bulk of fluid were modelled while using Nyborg’s limiting velocity method, of which the limiting velocity equations were extended to be applicable for cylindrical surfaces in this work. In particular, acoustic streaming fields in the primary (1, 0) mode were presented. The results are expected to be valuable to the study of basic physical aspects of microparticle acoustophoresis in microfluidic channels with circular cross-sections and the design of acoustofluidic devices for micromanipulation.
Real-Time Detection of Slug Velocity in Microchannels
Authors: Gagliano Salvina , Stella Giovanna , Bucolo Maide
Published: February 2020

Microfluidics processes play a central role in the design of portable devices for biological and chemical samples analysis. The bottleneck in this technological evolution is the lack of low cost detection systems and control strategies easily adaptable in different operative conditions, able to guarantee the processes reproducibility and reliability, and suitable for on-chip applications. In this work, a methodology for velocity detection of two-phase flow is presented in microchannels. The approach presented is based on a low-cost optical signals monitoring setup. The slug flow generated by the interaction of two immiscible fluids {air and water} in two microchannels was investigated. To verify the reliability of the detection systems, the flow nonlinearity was enhanced by using curved geometries and microchannel diameter greater than 100 μ m. The optical signals were analyzed by using an approach in a time domain, to extract the slug velocity, and one in the frequency domain, to compute the slug frequency. It was possible to distinguish the water and air slugs velocity and frequency. A relation between these two parameters was also numerically established. The results obtained represent an important step in the design of non-invasive, low-cost portable systems for micro-flow analysis, in order to prove that the developed methodology was implemented to realize a platform, easy to be integrated in a System-on-a-Chip, for the real-time slug flow velocity detection. The platform performances were successfully validated in different operative conditions.
Recent Developments of Flexible and Stretchable Electrochemical Biosensors
Authors: Yang Xudong , Cheng Huanyu
Published: February 2020

The skyrocketing popularity of health monitoring has spurred increasing interest in wearable electrochemical biosensors. Compared with the traditionally rigid and bulky electrochemical biosensors, flexible and stretchable devices render a unique capability to conform to the complex, hierarchically textured surfaces of the human body. With a recognition element (e.g., enzymes, antibodies, nucleic acids, ions) to selectively react with the target analyte, wearable electrochemical biosensors can convert the types and concentrations of chemical changes in the body into electrical signals for easy readout. Initial exploration of wearable electrochemical biosensors integrates electrodes on textile and flexible thin-film substrate materials. A stretchable property is needed for the thin-film device to form an intimate contact with the textured skin surface and to deform with various natural skin motions. Thus, stretchable materials and structures have been exploited to ensure the effective function of a wearable electrochemical biosensor. In this mini-review, we summarize the recent development of flexible and stretchable electrochemical biosensors, including their principles, representative application scenarios (e.g., saliva, tear, sweat, and interstitial fluid), and materials and structures. While great strides have been made in the wearable electrochemical biosensors, challenges still exist, which represents a small fraction of opportunities for the future development of this burgeoning field.
A Non-Cytotoxic Resin for Micro-Stereolithography for Cell Cultures of HUVECs
Authors: Männel Max , Fischer Carolin , Thiele Julian
Published: February 2020

Three-dimensional (3D) printing of microfluidic devices continuously replaces conventional fabrication methods. A versatile tool for achieving microscopic feature sizes and short process times is micro-stereolithography (µSL). However, common resins for µSL lack biocompatibility and are cytotoxic. This work focuses on developing new photo-curable resins as a basis for µSL fabrication of polymer materials and surfaces for cell culture. Different acrylate- and methacrylate-based compositions are screened for material characteristics including wettability, surface roughness, and swelling behavior. For further understanding, the impact of photo-absorber and photo-initiator on the cytotoxicity of 3D-printed substrates is studied. Cell culture experiments with human umbilical vein endothelial cells (HUVECs) in standard polystyrene vessels are compared to 3D-printed parts made from our library of homemade resins. Among these, after optimizing material composition and post-processing, we identify selected mixtures of poly(ethylene glycol) diacrylate (PEGDA) and poly(ethylene glycol) methyl ethyl methacrylate (PEGMEMA) as most suitable to allow for fabricating cell culture platforms that retain both the viability and proliferation of HUVECs. Next, our PEGDA/PEGMEMA resins will be further optimized regarding minimal feature size and cell adhesion to fabricate microscopic (microfluidic) cell culture platforms, e.g., for studying vascularization of HUVECs in vitro.
Genomic Considerations for the Modification of Saccharomyces cerevisiae for Biofuel and Metabolite Biosynthesis
Authors: Arnone James T.
Published: February 2020

The growing global population and developing world has put a strain on non-renewable natural resources, such as fuels. The shift to renewable sources will, thus, help meet demands, often through the modification of existing biosynthetic pathways or the introduction of novel pathways into non-native species. There are several useful biosynthetic pathways endogenous to organisms that are not conducive for the scale-up necessary for industrial use. The use of genetic and synthetic biological approaches to engineer these pathways in non-native organisms can help ameliorate these challenges. The budding yeast Saccharomyces cerevisiae offers several advantages for genetic engineering for this purpose due to its widespread use as a model system studied by many researchers. The focus of this review is to present a primer on understanding genomic considerations prior to genetic modification and manipulation of S. cerevisiae. The choice of a site for genetic manipulation can have broad implications on transcription throughout a region and this review will present the current understanding of position effects on transcription.
Whole-Genome Sequencing of Lactobacillus helveticus D75 and D76 Confirms Safety and Probiotic Potential
Authors: Toropov Vyacheslav , Demyanova Elena , Shalaeva Olga , Sitkin Stanislav , Vakhitov Timur
Published: February 2020

Whole-genome DNA sequencing of Lactobacillus D75 and D76 strains (Vitaflor, Russia) was determined using the PacBio RS II platform, which was followed by de novo assembly with SMRT Portal 2.3.0. The average nucleotide identity (ANI) test showed that both strains belong to the Lactobacillus helveticus, but not to the L. acidophilus, as previously assumed. In addition, 31 exopolysaccharide (EPS) production genes (nine of which form a single genetic cluster), 13 adhesion genes, 38 milk protein and 11 milk sugar utilization genes, 13 genes for and against specific antagonistic activity, eight antibiotic resistance genes, and also three CRISPR blocks and eight Cas I-B system genes were identified in the genomes of both strains. The expression of bacteriocin helveticin J genes was confirmed. In fact, the presence of identified genes suggests that L. helveticus D75 and D76 are able to form biofilms on the outer mucin layer, inhibit the growth of pathogens and pathobionts, utilize milk substrates with the formation of digestible milk sugars and bioactive peptides, resist bacteriophages, show some genome-determined resistance to antibiotics, and stimulate the host’s immune system. Pathogenicity genes have not been identified. The study results confirm the safety and high probiotic potential of the strains.
New Candidate Ultralow-Velocity Zone Locations from Highly Anomalous SPdKS Waveforms
Authors: Thorne Michael S. , Pachhai Surya , Leng Kuangdai , Wicks June K. , Nissen-Meyer Tarje
Published: February 2020

Ultralow-velocity zones (ULVZs) at the core–mantle boundary (CMB) represent some of the most preternatural features in Earth’s mantle. These zones most likely contain partial melt, extremely high iron content ferropericlase, or combinations of both. We analyzed a new collection of 58,155 carefully processed and quality-controlled broadband recordings of the seismic phase SPdKS in the epicentral distance range from 106° to 115°. These data sample 56.9% of the CMB by surface area. From these recordings we searched for the most anomalous seismic waveforms that are indicative of ULVZ presence. We used a Bayesian approach to identify the regions of the CMB that have the highest probability of containing ULVZs, thereby identifying sixteen regions of interest. Of these regions, we corroborate well-known ULVZ existence beneath the South China Sea, southwest Pacific, the Samoa hotspot, the southwestern US/northern Mexico, and Iceland. We find good evidence for new ULVZs beneath North Africa, East Asia, and north of Papua New Guinea. We provide further evidence for ULVZs in regions where some evidence has been hinted at before beneath the Philippine Sea, the Pacific Northwest, and the Amazon Basin. Additional evidence is shown for potential ULVZs at the base of the Caroline, San Felix and Galapagos hotspots.
Isolation and Purification of Glucans from an Italian Cultivar of Ziziphus jujuba Mill. and In Vitro Effect on Skin Repair
Authors: Fazio Alessia , La Torre Chiara , Caroleo Maria Cristina , Caputo Paolino , Plastina Pierluigi , Cione Erika
Published: February 2020

Glucans possess a broad spectrum of biological activities. In this context, the present study was performed to isolate glucans from an Italian cultivar of Ziziphus jujuba Mill. at three different harvesting periods, in order to evaluate their effects on wound healing. The dry fruits were subjected to an alkaline extraction and then isolated glucans were purified by dialyzation. The crude and soluble samples were characterized by FT-IR and SEM analyses. Afterwards, total, α- and β-glucan content was measured using an enzymatic procedure. The results highlighted that the glucan amount increased as the maturation proceeded as well as the β-glucan percentage, which ranged from 48.2 at the first harvesting to 65.4 at the third harvesting. Furthermore, the effects of isolated glucans on the viability and migration of keratinocytes were evaluated using the in vitro MTT and scratch wound assays. The best proliferative effects on keratinocyte migration have been achieved with soluble glucans from third harvesting at 100 μM after 24 and 48 h (*** P < 0.001). The same treated group showed significant narrowing of the scratch area after 24 h and complete closure of the injury after 48 h. The findings highlighted the effectiveness of soluble glucans on regeneration of damaged skin.
Amino Acid-Linked Low Molecular Weight Polyethylenimine for Improved Gene Delivery and Biocompatibility
Authors: Wu Xiao-Ru , Zhang Ji , Zhang Ju-Hui , Xiao Ya-Ping , He Xi , Liu Yan-Hong , Yu Xiao-Qi
Published: February 2020

The construction of efficient and low toxic non-viral gene delivery vectors is of great significance for gene therapy. Herein, two novel polycations were constructed via Michael addition from low molecular weight polyethylenimine (PEI) 600 Da and amino acid-containing linkages. Lysine and histidine were introduced for the purpose of improved DNA binding and pH buffering capacity, respectively. The ester bonds afforded the polymer biodegradability, which was confirmed by the gel permeation chromatography (GPC) measurement. The polymers could well condense DNA into nanoparticles and protect DNA from degradation by nuclease. Compared with PEI 25 kDa, these polymers showed higher transfection efficiency, lower toxicity, and better serum tolerance. Study of this mechanism revealed that the polyplexes enter the cells mainly through caveolae-mediated endocytosis pathway; this, together with their biodegradability, facilitates the internalization of polyplexes and the release of DNA. The results reveal that the amino acid-linked low molecular weight PEI polymers could serve as promising candidates for non-viral gene delivery.
Therapeutic Effects of Lithospermate B Complexed with Mg2+ or Zn2+ on Metabolic Syndrome Induced in Rats Fed with High-Fat Diet
Authors: Hsieh Sheng-Kuo , Lin Nan-Hei , Chen Ying-Jie , Lee Maw-Rong , Chen Wen-Ying , Tzen Jason T.C.
Published: February 2020

Excessive food consumption and insufficient exercise lead to the prevalence of metabolic syndrome in modern life, which consequently increases the risk of many chronic diseases. Magnesium lithospermate B (MLB) from Danshen has been demonstrated to improve metabolic changes in high-fat diet–fed rats with metabolic syndrome. In this study, Mg2+ in MLB was successfully replaced with Zn2+ to form zinc lithospermate B (ZLB) complex. MLB (10 mg/kg /day) and ZLB of various concentrations (1, 2.5, 5, and 10 mg/kg/day) were prepared and examined for their therapeutic effects on metabolic syndrome induced in rats fed with a high-fat diet. The results showed that both MLB and ZLB were able to recover or alleviate the abnormal physiological states of high-fat diet–fed rats including weight gain, epididymal fat accumulation, fatty liver, retarded blood lipid and glucose metabolism putatively caused by insulin resistance, and elevated levels of proinflammatory cytokine, leptin, and oxidative stress. In an overall view of the animal study, the effectiveness of ZLB supplementation seemed to be better than that of MLB supplementation for the recovery of high-fat-fed rats from metabolic syndrome.
The Plasma Spectroscopic Study of Dergaon Meteorite, India
Authors: Rai Abhishek K. , Pati Jayanta K. , Parigger Christian G. , Dubey Sonali , Rai Awadhesh K. , Bhagabaty Balen , Mazumdar Amulya C. , Duorah Kalpana
Published: February 2020

Meteorites are the recoverable portions of asteroids that reach the surface of the Earth. Meteorites are rare extraterrestrial objects studied extensively to improve our understanding of planetary evolution. In this work, we used calibration-free laser-induced breakdown spectroscopy (CF-LIBS) to evaluate the quantitative elemental and molecular analyses of the Dergaon meteorite, a H 4-5 chondrite fall sample from Assam, India. Spectral signatures of H, N, O, Na, Mg, Al, Si, P, K, Ca, Ti, Cr, Mn, Fe, Co, Ni, andIrweredetected. Along with the atomic emission, this work reports the molecular emission from FeO molecules. The concentration of the measured elements obtained using CF-LIBS is in close agreement with earlier reports. The elements H, N, and O and their concentrations are estimated by using CF-LIBS for the first time. This study applies laser spectroscopy to establish the presence of Ni, Cr, Co, and Ir in meteorites. The elemental analysis forms the basis for the establishment of the potential molecular composition of the Dergaon meteorite. Moreover, the elemental analysis approach bodes well for in-situ analyses of extraterrestrial objects including applications in planetary rover missions.
Tepary Bean (Phaseolus acutifolius) Lectins Induce Apoptosis and Cell Arrest in G0/G1 by P53(Ser46) Phosphorylation in Colon Cancer Cells
Authors: Moreno-Celis Ulisses , López-Martínez F. Josué , Cervantes-Jiménez Ricardo , Ferríz-Martínez Roberto Augusto , Blanco-Labra Alejandro , García-Gasca Teresa
Published: February 2020

A Tepary bean lectin fraction (TBLF) has been studied because it exhibits differential cytotoxic and anticancer effects on colon cancer. The present work focuses on the evaluation of the apoptotic mechanism of action on colon cancer cells. Initially, lethal concentrations (LC50) were obtained for the three studied cell lines (HT-29, RKO and SW-480). HT-29 showed the highest LC50, 10 and 100 times higher than that of RKO and SW-480 cells, respectively. Apoptosis was evaluated by flow cytometry, where HT-29 cells showed the highest levels of early and total apoptosis, caspases activity was confirmed and necrosis was discarded. The effect on cell cycle arrest was shown in the G0/G1 phase. Specific apoptosis-related gene expression was determined, where an increase in p53 and a decrease in Bcl-2 were observed. Expression of p53 gene showed the maximum level at 8 h with an important decrease at 12 and 24 h, also the phosphorylated p53(ser46) increased at 8 h. Our results show that TBLF induces apoptosis in colon cancer cells by p-p53(ser46) involvement. Further studies will focus on studying the specific signal transduction pathway.
Trastuzumab Conjugated Superparamagnetic Iron Oxide Nanoparticles Labeled with 225Ac as a Perspective Tool for Combined α-Radioimmunotherapy and Magnetic Hyperthermia of HER2-Positive Breast Cancer
Authors: Cędrowska Edyta , Pruszyński Marek , Gawęda Weronika , Żuk Michał , Krysiński Paweł , Bruchertseifer Frank , Morgenstern Alfred , Karageorgou Maria-Argyro , Bouziotis Penelope , Bilewicz Aleksander
Published: February 2020

It has been proven and confirmed in numerous repeated tests, that the use of a combination of several therapeutic methods gives much better treatment results than in the case of separate therapies. Particularly promising is the combination of ionizing radiation and magnetic hyperthermia in one drug. To achieve this objective, magnetite nanoparticles have been modified in their core with α emitter 225Ac, in an amount affecting only slightly their magnetic properties. By 3-phosphonopropionic acid (CEPA) linker nanoparticles were conjugated covalently with trastuzumab (Herceptin®), a monoclonal antibody that recognizes ovarian and breast cancer cells overexpressing the HER2 receptors. The synthesized bioconjugates were characterized by transmission electron microscopy (TEM), Dynamic Light Scattering (DLS) measurement, thermogravimetric analysis (TGA) and application of 131I-labeled trastuzumab for quantification of the bound biomolecule. The obtained results show that one 225Ac@Fe3O4-CEPA-trastuzumab bioconjugate contains an average of 8–11 molecules of trastuzumab. The labeled nanoparticles almost quantitatively retain 225Ac (>98%) in phosphate-buffered saline (PBS) and physiological salt, and more than 90% of 221Fr and 213Bi over 10 days. In human serum after 10 days, the fraction of 225Ac released from 225Ac@Fe3O4 was still less than 2%, but the retention of 221Fr and 213Bi decreased to 70%. The synthesized 225Ac@Fe3O4-CEPA-trastuzumab bioconjugates have shown a high cytotoxic effect toward SKOV-3 ovarian cancer cells expressing HER2 receptor in-vitro. The in-vivo studies indicate that this bioconjugate exhibits properties suitable for the treatment of cancer cells by intratumoral or post-resection injection. The intravenous injection of the 225Ac@Fe3O4-CEPA-trastuzumab radiobioconjugate is excluded due to its high accumulation in the liver, lungs and spleen. Additionally, the high value of a specific absorption rate (SAR) allows its use in a new very perspective combination of α radionuclide therapy with magnetic hyperthermia.
The CO2 Absorption in Flue Gas Using Mixed Ionic Liquids
Authors: Wu Guoqing , Liu Ying , Liu Guangliang , Pang Xiaoying
Published: February 2020

Because of the appealing properties, ionic liquids (ILs) are believed to be promising alternatives for the CO2 absorption in the flue gas. Several ILs, such as [NH2emim][BF4], [C4mim][OAc], and [NH2emim[OAc], have been used to capture CO2 of the simulated flue gas in this work. The structural changes of the ILs before and after absorption were also investigated by quantum chemical methods, FTIR, and NMR technologies. However, the experimental results and theoretical calculation showed that the flue gas component SO2 would significantly weaken the CO2 absorption performance of the ILs. SO2 was more likely to react with the active sites of the ILs than CO2. To improve the absorption capacity, the ionic liquid (IL) mixture [C4mim][OAc]/ [NH2emim][BF4] were employed for the CO2 absorption of the flue gas. It is found that the CO2 absorption capacity would be increased by about 25%, even in the presence of SO2. The calculation results suggested that CO2 could not compete with SO2 for reacting with the IL during the absorption process. Nevertheless, SO2 might be first captured by the [NH2emim][BF4] of the IL mixture, and then the [C4mim][OAc] ionic liquid could absorb more CO2 without the interference of SO2.
Anticancer Potential of Raddeanin A, a Natural Triterpenoid Isolated from Anemone raddeana Regel
Authors: Naz Irum , Ramchandani Shanaya , Khan Muhammad Rashid , Yang Min Hee , Ahn Kwang Seok
Published: February 2020

Natural compounds extracted from plants have gained immense importance in the fight against cancer cells due to their lesser toxicity and potential therapeutic effects. Raddeanin A (RA), an oleanane type triterpenoid is a major compound isolated from Anemone raddeana Regel. As an anticancer agent, RA induces apoptosis, cell cycle arrest, inhibits invasion, migration and angiogenesis in malignant cell lines as well as in preclinical models. In this systemic review, the pharmacological effects of RA and its underlying molecular mechanisms were carefully analyzed and potential molecular targets have been highlighted. The apoptotic potential of RA can be mediated through the modulation of Bcl-2, Bax, caspase-3, caspase-8, caspase-9, cytochrome c and poly-ADP ribose polymerase (PARP) cleavage. PI3K/Akt signaling pathway serves as the major molecular target affected by RA. Furthermore, RA can block cell proliferation through inhibition of canonical Wnt/β-catenin signaling pathway in colorectal cancer cells. RA can also alter the activation of NF-κB and STAT3 signaling pathways to suppress invasion and metastasis. RA has also exhibited promising anticancer potential against drug resistant cancer cells and can enhance the anticancer effects of several chemotherapeutic agents. Overall, RA may function as a promising compound in combating cancer, although further in-depth study is required under clinical settings to validate its efficacy in cancer patients.
Hempseed Lignanamides Rich-Fraction: Chemical Investigation and Cytotoxicity towards U-87 Glioblastoma Cells
Authors: Nigro Ersilia , Crescente Giuseppina , Formato Marialuisa , Pecoraro Maria Tommasina , Mallardo Marta , Piccolella Simona , Daniele Aurora , Pacifico Severina
Published: February 2020

The weak but noteworthy presence of (poly)phenols in hemp seeds has been long overshadowed by the essential polyunsaturated fatty acids and digestible proteins, considered responsible for their high nutritional benefits. Instead, lignanamides and their biosynthetic precursors, phenylamides, seem to display interesting and diverse biological activities only partially clarified in the last decades. Herein, negative mode HR-MS/MS techniques were applied to the chemical investigation of a (poly)phenol-rich fraction, obtained from hemp seeds after extraction/fractionation steps. This extract contained phenylpropanoid amides and their random oxidative coupling derivatives, lignanamides, which were the most abundant compounds and showed a high chemical diversity, deeply unraveled through high resolution tandem mass spectrometry (HR-MS/MS) tools. The effect of different doses of the lignanamides-rich extract (LnHS) on U-87 glioblastoma cell line and non-tumorigenic human fibroblasts was evaluated. Thus, cell proliferation, genomic DNA damage, colony forming and wound repair capabilities were assessed, as well as LnHS outcome on the expression levels of pro-inflammatory cytokines. LnHS significantly inhibited U-87 cancer cell proliferation, but not that of fibroblasts, and was able to reduce U-87 cell migration, inducing further DNA damage. No modification in cytokines’ expression level was found. Data acquired suggested that LnHS acted in U-87 cells by inducing the apoptosis machinery and suppressing the autophagic cell death.
Production of Ellagitannin Hexahydroxydiphenoyl Ester by Spontaneous Reduction of Dehydrohexa-hydroxydiphenoyl Ester
Authors: Era Manami , Matsuo Yosuke , Saito Yoshinori , Tanaka Takashi
Published: February 2020

Amariin is an ellagitannin with two dehydrohexahydroxydiphenoyl (DHHDP) moieties connecting glucose 2,4- and 3,6-hydroxy groups. This tannin is predominant in the young leaves of Triadica sebifera and Carpinus japonica. However, as the leaves grow, the 3,6-DHHDP is converted to its reduced form, the hexahydroxydiphenoyl (HHDP) group, to generate geraniin, a predominant ellagitannin of the matured leaves. The purified amariin is unstable in aqueous solution, and the 3,6-(R)-DHHDP is spontaneously degraded to give HHDP, whereas 2,4-(R)-DHHDP is stable. The driving force of the selective reduction of the 3,6-DHHDP of amariin is shown to be the conformational change of glucose from O,3B to 1C4. Heating geraniin with pyridine affords 2,4-(R)-DHHDP reduction products. Furthermore, the acid hydrolysis of geraniin yields two equivalents of ellagic acid. Although the reaction mechanism is still ambiguous, these results propose an alternative biosynthetic route of the ellagitannin HHDP groups.
Endogenous 3-Iodothyronamine (T1AM) and Synthetic Thyronamine-Like Analog SG-2 Act as Novel Pleiotropic Neuroprotective Agents through the Modulation of SIRT6
Authors: Bellusci Lorenza , Runfola Massimiliano , Carnicelli Vittoria , Sestito Simona , Fulceri Federica , Santucci Filippo , Lenzi Paola , Fornai Francesco , Rapposelli Simona , Origlia Nicola , Zucchi Riccardo , Chiellini Grazia
Published: February 2020

3-iodothyronamine (T1AM) and the recently developed analog SG-2 are rapidly emerging as promising multi-target neuroprotective ligands able to reprogram lipid metabolism and to produce memory enhancement in mice. To elucidate the molecular mechanisms underlying the multi-target effects of these novel drug candidates, here we investigated whether the modulation of SIRT6, known to play a key role in reprogramming energy metabolism, might also drive the activation of clearing pathways, such as autophagy and ubiquitine-proteasome (UP), as further mechanisms against neurodegeneration. We show that both T1AM and SG-2 increase autophagy in U87MG cells by inducing the expression of SIRT6, which suppresses Akt activity thus leading to mTOR inhibition. This effect was concomitant with down-regulation of autophagy-related genes, including Hif1α, p53 and mTOR. Remarkably, when mTOR was inhibited a concomitant activation of autophagy and UP took place in U87MG cells. Since both compounds activate autophagy, which is known to sustain long term potentiation (LTP) in the entorhinal cortex (EC) and counteracting AD pathology, further electrophysiological studies were carried out in a transgenic mouse model of AD. We found that SG-2 was able to rescue LTP with an efficacy comparable to T1AM, further underlying its potential as a novel pleiotropic agent for neurodegenerative disorders treatment.
Lactobacillus Brevis OPK-3 from Kimchi Prevents Obesity and Modulates the Expression of Adipogenic and Pro-Inflammatory Genes in Adipose Tissue of Diet-Induced Obese Mice
Authors: Park Jung Eun , Oh Suk-Heung , Cha Youn-Soo
Published: February 2020

Our previous study reported that lactic acid bacteria (L. brevis OPK-3) isolated from kimchi ameliorated intracellular lipid accumulation in 3T3-L1 adipocyte. The current study explored potential roles of L. brevis OPK-3 (KLAB) on preventing body weight gain and its effect on the inflammatory response of adipose tissue. Male C57BL/6 mice (n = 10) were divided into four groups: normal diet with distilled water (NDC), high-fat diet with distilled water (HDC), high-fat diet with L-ornithine (OTC) or high-fat diet with KLAB. The KLAB supplement resulted in significantly lower body weight, lower epididymal fat tissue mass, and lower serum and hepatic TG levels than the HDC. KLAB supplementation improved serum cytokines, and real-time polymerase chain reaction (PCR) analysis showed significantly lower inflammatory cytokine mRNA levels in epididymal adipose tissue. These results suggest that the administration of KLAB inhibits the induction of inflammation in adipose tissue along with the inhibition of weight gain. Therefore, this study demonstrates the therapeutic and beneficial value of this strain produced during the fermentation of kimchi.
Unripe Rubus coreanus Miquel Extract Containing Ellagic Acid Regulates AMPK, SREBP-2, HMGCR, and INSIG-1 Signaling and Cholesterol Metabolism In Vitro and In Vivo
Authors: Lee Ki Hoon , Jeong Eui-Seon , Jang Goeun , Na Ju-Ryun , Park Soyi , Kang Wan Seok , Kim Eun , Choi Hakjoon , Kim Jin Seok , Kim Sunoh
Published: February 2020

Our previous study demonstrated that a 5% ethanol extract of unripe Rubus coreanus (5-uRCK) has hypo-cholesterolemic and anti-obesity activity. However, the molecular mechanisms of its effects are poorly characterized. We hypothesized that 5-uRCK and one of its major bioactive compounds, ellagic acid, decrease cellular and plasma cholesterol levels. Thus, we investigated the hypocholesterolemic activity and mechanism of 5-uRCK in both hepatocytes and a high-cholesterol diet (HCD)-induced rat model. Cholesterol in the liver and serum was significantly reduced by 5-uRCK and ellagic acid. The hepatic activities of HMG-CoA and CETP were reduced, and the hepatic activity of LCAT was increased by both 5-uRCK extract and ellagic acid, which also caused histological improvements. The MDA content in the aorta and serum was significantly decreased after oral administration of 5-uRCK or ellagic acid. Further immunoblotting analysis showed that AMPK phosphorylation in the liver was induced by 5-uRCK and ellagic acid, which activated AMPK, inhibiting the activity of HMGCR by inhibitory phosphorylation. In contrast, 5-uRCK and ellagic acid suppressed the nuclear translocation and activation of SREBP-2, which is a key transcription factor in cholesterol biosynthesis. In conclusion, our results suggest that 5-uRCK and its bioactive compound, ellagic acid, are useful alternative therapeutic agents to regulate blood cholesterol.
Silver Nanoparticles Synthesized by Using Bacillus cereus SZT1 Ameliorated the Damage of Bacterial Leaf Blight Pathogen in Rice
Authors: Ahmed Temoor , Shahid Muhammad , Noman Muhammad , Niazi Muhammad Bilal Khan , Mahmood Faisal , Manzoor Irfan , Zhang Yang , Li Bin , Yang Yong , Yan Chengqi , Chen Jianping
Published: February 2020

Amongst serious biotic factors deteriorating crop yield, the most destructive pathogen of rice is Xanthomonas oryzae pv. oryzae (Xoo), which causes bacterial leaf blight (BLB) disease. This study involved targeted use of biogenic silver nanoparticles (AgNPs) to control BLB in order to cope with the disadvantages of chemical disease control. AgNPs were biologically synthesized from natively isolated Bacillus cereus strain SZT1, which was identified through 16S rRNA gene sequence analysis. Synthesis of AgNPs in bacterial culture supernatant was confirmed through UV-VIS spectroscopy. Fourier transform infrared spectroscopy (FTIR) confirmed that the existence of AgNPs was stabilized with proteins and alcoholic groups. X-ray diffraction (XRD) data revealed the crystalline nature and imaging with scanning electron microscopy (SEM) and transmission electron microscopy (TEM), showing the spherical shape of AgNPs with particle sizes ranging from 18 to 39 nm. The silver presence in AgNPs was further confirmed by energy dispersive spectra. Biogenic AgNPs showed substantial antibacterial activity (24.21 ± 1.01 mm) for Xoo. In a pot experiment, AgNPs were found to be effective weapons for BLB by significantly increasing the plant biomass with a decreased cellular concentration of reactive oxygen species and increased concentration of antioxidant enzyme activity.
Novel Carboxylated Chitosan-Based Triptolide Conjugate for the Treatment of Rheumatoid Arthritis
Authors: Zhang Lan , Yan Min , Chen Kun , Tian Qikang , Song Junying , Zhang Zijuan , Xie Zhishen , Yuan Yong , Jia Yaquan , Zhu Xin , Zhang Zhenqiang , Wu Xiangxiang , Zeng Huahui
Published: February 2020

A new platform for triptolide (TP) delivery was prepared by conjugating TP to a carboxylmethyl chitosan (CMCS). Compared with the natural TP, the TP-conjugate (TP-CMCS) containing TP of ~5 wt% exhibited excellent aqueous solubility (>5 mg/mL). Results of in vitro experiments showed that TP-CMCS could relieve TP-induced inhibition on RAW264.7 cells and apoptosis, respectively. Compared with the TP group, TP-CMCS could effectively alleviate the toxicity injury of TP and decreased the mortality rate of the mice (p < 0.05). TP-CMCS did not cause much damage to the liver (AST and ALT) and kidney (BUN and CRE) (p < 0.05). After administration, the levels of IL-6, IL-1β, and TNF-α decreased, and the arthritis detumescence percentages increased significantly, and the bony erosion degree was distinctly decreased in the TP-CMCS groups and TP group. Our results suggested that TP-CMCS was a useful carrier for the treatment of RA, which enhanced aqueous solubility of free TP and reduced drug toxicity in vitro and in vivo.
Influence of Plant Species on Microbial Activity and Denitrifier Population Development in Vegetated Denitrifying Wood-Chip Bioreactors
Authors: Fatehi-Pouladi Soheil , Anderson Bruce C. , Wootton Brent , Wallace Sarah J. , Bissegger Sonja , Rozema Lloyd , Weber Kela P.
Published: February 2020

The microbial characteristics of four vegetated and one unplanted wood-chip bioreactors treating greenhouse effluent were investigated in a continuous experiment operated for over 2.5 years. The bioreactors were designed to reduce nitrate concentrations via naturally induced microbial denitrification. The vegetation type and reactor depth were both found to be significant factors in defining the mixed microbial activity. However, a consistent correlation between the abundance of the denitrifying communities and reactor depth could not be found across all reactors. The media samples from the unit planted with Typha angustifolia displayed higher microbial activities compared with the other reactors. This plant’s root-associated bacteria also demonstrated the greatest copies of the denitrifying genes nirK and nosZ. The most abundant denitrifier communities and those encoding the nosZ gene were found in the unplanted reactor, followed by the T. angustifolia unit. The T. angustifolia reactor demonstrated greater microbial activity and denitrification capacity at the depth of 20 cm, while the greatest denitrification capacity in the unplanted reactor was found at the depth of 60 cm. These findings indicated the importance of the T. angustifolia rhizosphere to support microbial community establishment and growth in the vicinity of the plant’s roots, although those populations may eventually develop in an unplanted environment.
Stimuli-Responsive Nanodiamond–Polyelectrolyte Composite Films
Authors: Tiainen Tony , Lobanova Marina , Karjalainen Erno , Tenhu Heikki , Hietala Sami
Published: February 2020

Nanodiamonds (NDs) can considerably improve the mechanical and thermal properties of polymeric composites. However, the tendency of NDs to aggregate limits the potential of these non-toxic, mechanically- and chemically-robust nanofillers. In this work, tough, flexible, and stimuli-responsive polyelectrolyte films composed of cross-linked poly(butyl acrylate-co-dimethylaminoethyl methacrylate) (P(BA-co-DMAEMA)) were prepared by photopolymerization. The effects of the added carboxylate-functionalized NDs on their mechanical and stimuli-responsive properties were studied. When the negatively charged NDs were added to the polymerization media directly, the mechanical properties of the films changed only slightly, because of the uneven distribution of the aggregated NDs in the films. In order to disperse and distribute the NDs more evenly, a prepolymerized polycation block copolymer complexing agent was used during the photopolymerization process. This approach improved the mechanical properties of the films and enhanced their thermally-induced, reversible phase-transition behavior.
Microscopic Techniques for the Analysis of Micro and Nanostructures of Biopolymers and Their Derivatives
Authors: Venkateshaiah Abhilash , Padil Vinod V.T. , Nagalakshmaiah Malladi , Waclawek Stanisław , Černík Miroslav , Varma Rajender S.
Published: February 2020

Natural biopolymers, a class of materials extracted from renewable sources, is garnering interest due to growing concerns over environmental safety; biopolymers have the advantage of biocompatibility and biodegradability, an imperative requirement. The synthesis of nanoparticles and nanofibers from biopolymers provides a green platform relative to the conventional methods that use hazardous chemicals. However, it is challenging to characterize these nanoparticles and fibers due to the variation in size, shape, and morphology. In order to evaluate these properties, microscopic techniques such as optical microscopy, atomic force microscopy (AFM), and transmission electron microscopy (TEM) are essential. With the advent of new biopolymer systems, it is necessary to obtain insights into the fundamental structures of these systems to determine their structural, physical, and morphological properties, which play a vital role in defining their performance and applications. Microscopic techniques perform a decisive role in revealing intricate details, which assists in the appraisal of microstructure, surface morphology, chemical composition, and interfacial properties. This review highlights the significance of various microscopic techniques incorporating the literature details that help characterize biopolymers and their derivatives.
The Potential Production of the Bioactive Compound Pinene Using Whey Permeate
Authors: Risner Derrick , Marco Maria L. , Pace Sara A. , Spang Edward S.
Published: February 2020

Pinene is a secondary plant metabolite that has functional properties as a flavor additive as well as potential cognitive health benefits. Although pinene is present in low concentrations in several plants, it is possible to engineer microorganisms to produce pinene. However, feedstock cost is currently limiting the industrial scale-up of microbial pinene production. One potential solution is to leverage waste streams such as whey permeate as an alternative to expensive feedstocks. Whey permeate is a sterile-filtered dairy effluent that contains 4.5% weight/weight lactose, and it must be processed or disposed of due its high biochemical oxygen demand, often at significant cost to the producer. Approximately 180 million m3 of whey is produced annually in the U.S., and only half of this quantity receives additional processing for the recovery of lactose. Given that organisms such as recombinant Escherichia coli grow on untreated whey permeate, there is an opportunity for dairy producers to microbially produce pinene and reduce the biological oxygen demand of whey permeate via microbial lactose consumption. The process would convert a waste stream into a valuable coproduct. This review examines the current approaches for microbial pinene production, and the suitability of whey permeate as a medium for microbial pinene production.
Metabolomic Profiling and Antioxidant, Anticancer and Antimicrobial Activities of Hyphaene thebaica
Authors: Taha Ghada A. , Abdel-Farid Ibrahim B. , Elgebaly Hassan A. , Mahalel Usama A. , Sheded Mohamed G. , Bin-Jumah May , Mahmoud Ayman M.
Published: February 2020

This study investigated the metabolic content and biological activities of Hyphaene thebaica leaves, male parts and fruits methanolic extracts. The phytochemical constituents were determined, and multivariate data analysis discriminated the evaluated three parts into three groups according to the content of phenolics, flavonoids, flavonols, saponins, anthocyanins and tannins. High-performance liquid chromatography (HPLC) profiling of polyphenols revealed the dominance of catechins, rutin and apigenin-7-glucosides in leaves, protocatechuin, p-hydroxybenzoic, syringic, vanillic, rosmarinic, p-coumaric acids and chrysin in male parts, and chlorogenic acid in fruits. Leaves and male parts showed stronger free radical scavenging activity than the fruits. Positive correlations between total antioxidant capacity and carbohydrates, phenolics and flavonols were observed. The three extracts exhibited potent anti-cancer activity against liver and lung carcinoma cell lines. All extracts exhibited antibacterial activity, while only fruits showed antifungal efficacy. In conclusion, H. thebaica leaves, male parts and fruits contain a variety of phytochemicals with antioxidant, anticancer and antimicrobial activities.
Thermal Degradation of Cassava Rhizome in Thermosyphon-Fixed Bed Torrefaction Reactor
Authors: Soponpongpipat Nitipong , Nanetoe Suwat , Comsawang Paisan
Published: February 2020

A thermosyphon-fixed bed reactor was designed and constructed to investigate the temperature distribution of the cassava rhizome and its decomposition behavior. To study the properties of torrefied char obtained from this reactor, cassava rhizome was torrefied in five different configurations, including the thermosyphon-fixed bed reactor, a laboratory reactor in compact bulk arrangement with N2 as the purge gas and without any purge gas, and another one in a hollow bulk arrangement with and without purge gas. It was found that the use of thermosyphons with a fixed bed reactor improved the uniform temperature distribution. The average heating rate to the cassava rhizome bed was 1.40 °C/min, which was 2.59 times higher than that of the fixed bed reactor without thermosyphons. Compared to the other configurations, this reactor gave the highest higher heating value (HHV) and the lowest mass yield of 23.97 MJ/kg and 47.84%, respectively. The water vapor produced in this reactor played an autocatalyst role in the decomposition reaction. Finally, the thermosyphon-fixed bed reactor gave an energy yield in the range of 70.43% to 86.68%. The plot of the HHV ratio–mass yield diagram indicated the difference of torrefied char obtained from different reactors. The thermosyphon-fixed bed reactor produced torrefied biomass with the highest HHV ratio compared to that of other reactors at the same energy yield.
Research on Flow Characteristics of Straight Line Conjugate Internal Meshing Gear Pump
Authors: Chai Hongqiang , Yang Guolai , Wu Guoguo , Bai Guixiang , Li Wenqi
Published: February 2020

The improvement of the overall performance of hydraulic pumps is the basis of intelligent hydraulics. Taking the straight line conjugate internal meshing gear pump as the research object, the theoretical flow rate and the geometric flow pulsation rate equations are established in this study through the volume change method. The change laws of the gear pair’s geometric parameters on the theoretical flow rate and the geometric flow pulsation rate are studied. The simulation model of the internal flow channel is established, and the influence factors and the influence degree of the flow pulsation and average flow rate are analyzed. The high-pressure positive displacement pump test system is also designed and built. The performance evaluations are conducted, and the experimental results are analyzed. The results show that the periodic change of the meshing point position is the root cause of the geometric flow pulsation. The theoretical flow rate and the geometric flow pulsation rate are 103.71 L/min and 1.76%, respectively. To increase the theoretical flow rate whilst decreasing the geometric flow pulsation rate, the tip circle radius of the external gear should be increased as much as possible within the allowable range of the design calculation. Amongst the three influencing factors that produce flow pulsation, the oil compressibility has no effect on the flow pulsation. The uneven internal leakage is the main factor, and the geometric flow pulsation only accounts for a small proportion. The internal leakage reduces the simulated flow rate by 3.59 L/min. The difference between the experimental and simulated flow rates is less than 2%. Within the allowable speed range, the rotation speed of the external gear should be increased as much as possible to increase the average flow rate and the volumetric efficiency.
Multifaith Third Spaces: Digital Activism, Netpeace, and the Australian Religious Response to Climate Change
Authors: Smith Geraldine , Halafoff Anna
Published: February 2020

Multifaith spaces typically imply sites where people of diverse faith traditions gather to participate in shared activities or practices, such as multifaith prayer rooms, multifaith art exhibitions, or multifaith festivals. Yet, there is a lack of literature that discusses online multifaith spaces. This paper focuses on the website of an Australian multifaith organisation, the Australian Religious Response to Climate Change (ARRCC), which we argue is a third space of digital activism. We begin by outlining the main aims of the multifaith movement and how it responds to global risks. We then review religion and geography literature on space, politics and poetics, and on material religion and embodiment. Next, we discuss third spaces and digital activism, and then present a thematic and aesthetic analysis on the ARRCC website drawing on these theories. We conclude with a summary of our main findings, arguing that mastery of the online realm through digital third spaces and activism, combined with a willingness to partake in “real-world”, embodied activism, can assist multifaith networks and social networks more generally to develop Netpeace and counter the risks of climate change collaboratively.