Slit Lamp Report Generation and Question Answering: Development and Validation of a Multimodal Transformer Model with Large Language Model Integration (Preprint)
Authors: Zhao Ziwei , Zhang Weiyi , Chen Xiaolan , Song Fan , Gunasegaram James , Huang Wenyong , Shi Danli , He Mingguang , Liu Na 
Published: December 2024

BACKGROUND

Large language models have shown remarkable efficacy in various medical research and clinical applications. However, their skills in medical image recognition and subsequent report generation or question answering (QA) remain limited.

OBJECTIVE

We aim to finetune a multimodal, transformer-based model for generating medical reports from slit lamp images and develop a QA system using Llama2. We term this entire process slit lamp–GPT.

METHODS

Our research used a dataset of 25,051 slit lamp images from 3409 participants, paired with their corresponding physician-created medical reports. We used these data, split into training, validation, and test sets, to finetune the Bootstrapping Language-Image Pre-training framework toward report generation. The generated text reports and human-posed questions were then input into Llama2 for subsequent QA. We evaluated performance using qualitative metrics (including BLEU [bilingual evaluation understudy], CIDEr [consensus-based image description evaluation], ROUGE-L [Recall-Oriented Understudy for Gisting Evaluation—Longest Common Subsequence], SPICE [Semantic Propositional Image Caption Evaluation], accuracy, sensitivity, specificity, precision, and <i>F</i><sub>1</sub>-score) and the subjective assessments of two experienced ophthalmologists on a 1-3 scale (1 referring to high quality).

RESULTS

We identified 50 conditions related to diseases or postoperative complications through keyword matching in initial reports. The refined slit lamp–GPT model demonstrated BLEU scores (1-4) of 0.67, 0.66, 0.65, and 0.65, respectively, with a CIDEr score of 3.24, a ROUGE (Recall-Oriented Understudy for Gisting Evaluation) score of 0.61, and a Semantic Propositional Image Caption Evaluation score of 0.37. The most frequently identified conditions were cataracts (22.95%), age-related cataracts (22.03%), and conjunctival concretion (13.13%). Disease classification metrics demonstrated an overall accuracy of 0.82 and an <i>F</i><sub>1</sub>-score of 0.64, with high accuracies (≥0.9) observed for intraocular lens, conjunctivitis, and chronic conjunctivitis, and high <i>F</i><sub>1</sub>-scores (≥0.9) observed for cataract and age-related cataract. For both report generation and QA components, the two evaluating ophthalmologists reached substantial agreement, with κ scores between 0.71 and 0.84. In assessing 100 generated reports, they awarded scores of 1.36 for both completeness and correctness; 64% (64/100) were considered “entirely good,” and 93% (93/100) were “acceptable.” In the evaluation of 300 generated answers to questions, the scores were 1.33 for completeness, 1.14 for correctness, and 1.15 for possible harm, with 66.3% (199/300) rated as “entirely good” and 91.3% (274/300) as “acceptable.”

CONCLUSIONS

This study introduces the slit lamp–GPT model for report generation and subsequent QA, highlighting the potential of large language models to assist ophthalmologists and patients.