bluuebunny/crossref_metadata_2025 huggingface dataset:
Illegal long-line fishing and albatross extinction risk
Authors: Petrossian Gohar A. , de By Rolf A. , Clarke Ronald V.
Published: November 2016

Birds are commonly entangled in long-line fisheries, and increases in long-line fishing activity have consistently caused declines in seabird populations. Environmental criminology would posit that the risk of such declines is greater in the case of illegal long-line fisheries, which are less likely to implement bycatch mitigation measures. To investigate this possibility we examined the overlap between data on illegal fishing and albatross at-sea occurrence ranges. Moderate correlations were found between mean exposure to illegal fishing and the Red List status of albatross species, but none were found between Red List status and total fishing pressure. A second analysis overlaid albatross at-sea occurrence ranges with long-lining data for the member countries of the Convention on Conservation of Southern Bluefin Tuna to compare the effect of exposure to legal and illegal hooks on Red List status. Lacking a better measure, Country A's hooks were used as a proxy for illegal hooks. Critically Endangered and Endangered species were 12 and 3.4 times more exposed to illegal hooks, respectively, than Near Threatened species, whereas there was no relationship between Red List status and exposure to legal hooks. Country-level analyses confirmed these findings, which provide evidence that illegal long-line fishing poses a particular threat to the survival of albatrosses. The findings suggest that the bird conservation lobby should work closely with fisheries authorities to tackle illegal fishing, and that research should identify the highest risk areas of overlap between illegal fishing and albatross at-sea ranges.
Antenatal depressive symptoms as a predictor of deterioration in perceived social support across the perinatal period: a four-wave cohort study in Turkey
Authors: Senturk V. , Abas M. , Dewey M. , Berksun O. , Stewart R.
Published: November 2016

Background

In a perinatal cohort of women in urban and rural Turkey, we investigated associations between antenatal depressive symptoms and subsequent changes in perceived quality of key family relationships.

Method

Of 730 women recruited in their third trimester (94.6% participation), 578 (79.2%) were reassessed at a mean of 4.1 (s.d. = 3.3) months after childbirth, 488 (66.8%) were reassessed at 13.7 (s.d. = 2.9) months, and 448 (61.4%) at 20.8 (s.d. = 2.7) months. At all four examinations, self-reported quality of relationship with the husband, mother and mother-in-law was ascertained using the Close Persons Questionnaire with respect to emotional support, practical support and negative aspects of the relationship. Antenatal depressive symptoms were defined using the Edinburgh Postnatal Depression Scale. A range of covariates in mixed models was considered including age, education, number of children, family structure, physical health, past emotional problems and stressful life events.

Results

Key findings were as follows: (i) reported emotional and practical support from all three relationships declined over time in the cohort overall; (ii) reported emotional support from the husband, and emotional and practical support from the mother-in-law, declined more strongly in women with antenatal depressive symptoms; (iii) associations between depressive symptoms and worsening spouse relationship were more pronounced in traditional compared with nuclear families.

Conclusions

Antenatal depressive symptoms predicted marked decline in the quality of key relationships over the postnatal period. This may account for some of the contemporaneous associations between depression and worse social support, and may compound the risk of perinatal depression in subsequent pregnancies.
Gendered trajectories of support from close relationships from middle to late life
Authors: LIAO JING , MCMUNN ANNE , MEJÍA SHANNON T. , BRUNNER ERIC J.
Published: November 2016

This study investigates gender differences in trajectories of support from close relationships among adults in the transition from middle to old age, taking into account stability and change in the identity of the closest persons. Multi-level modelling was used to estimate gendered age-trajectories in three dimensions of support: emotional support, practical support and negative encounters, which were repeatedly measured over ten years amongst 6,718 Whitehall II participants. Men were more likely than women to nominate their partner as their closest person throughout follow-up; whereas women drew support from a wider range of sources. Gender differences were only evident in age-related trajectories of emotional support, and were contingent on stability and change in the closest relationships. Men reported increased emotional support from closest relationships with age, except for those who transitioned out of a partnership. For women, emotional support was stable among those whose closest person remained consistent, but decreased among those who changed their closest person. Further, emotional support increased with age for all married men, which was only the case for married women who nominated their partner as their closest person. Our analysis highlights gender-specific trajectories of perceived support from adults’ closest relationships in late life, and indicate more pronounced socio-emotional selectivity in older men than women.
Bacterial growth tolerance to concentrations of chlorate and perchlorate salts relevant to Mars
Authors: Al Soudi Amer F. , Farhat Omar , Chen Fei , Clark Benton C. , Schneegurt Mark A.
Published: November 2016

The Phoenix lander at Mars polar cap found appreciable levels of (per)chlorate salts, a mixture of perchlorate and chlorate salts of Ca, Fe, Mg and Na at levels of ~0.6% in regolith. These salts are highly hygroscopic and can form saturated brines through deliquescence, likely producing aqueous solutions with very low freezing points on Mars. To support planetary protection efforts, we have measured bacterial growth tolerance to (per)chlorate salts. Existing bacterial isolates from the Great Salt Plains of Oklahoma (NaCl-rich) and Hot Lake in Washington (MgSO4-rich) were tested in high concentrations of Mg, K and Na salts of chlorate and perchlorate. Strong growth was observed with nearly all of these salinotolerant isolates at 1% (~0.1 M) (per)chlorate salts, similar to concentrations observed in bulk soils on Mars. Growth in perchlorate salts was observed at concentrations of at least 10% (~1.0 M). Greater tolerance was observed for chlorate salts, where growth was observed to 2.75 M (>25%). Tolerance to K salts was greatest, followed by Mg salts and then Na salts. Tolerances varied among isolates, even among those within the same phylogenetic clade. Tolerant bacteria included genera that also are found in spacecraft assembly facilities. Substantial microbial tolerance to (per)chlorate salts is a concern for planetary protection since tolerant microbes contaminating spacecraft would have a greater chance for survival and proliferation, despite the harsh chemical conditions found near the surface of Mars.
The ontology of fractional reserve banking
Authors: BAUWENS MICHAËL
Published: November 2016

The recent economic crisis has re-ignited the debate over the institution of fractional reserve banking (FRB) and its possible adverse economic effects. This paper brings a so far neglected aspect of the problem to the table, namely social ontology. After addressing the scope of social ontology in relation to social metaphysics, social science and FRB, a general ontological framework for money and banking is sketched and applied to the debate between Austrian opponents and proponents of FRB. It shows that the oppositions reflect metaphysical and ontological positions on the reality of powers and dispositions, namely that a realist position in the metaphysics of powers and dispositions tends to a critical position toward FRB, whereas a sceptical position on powers and dispositions leads to a favorable position toward FRB. A final section gives further examples of how these ontological presuppositions shape other arguments in the debate.
Cognitive rules, institutions, and economic growth: Douglass North and beyond
Authors: GREIF AVNER , MOKYR JOEL
Published: November 2016

Douglass North's writing on institutional change recognized from the very start that such change depends on cognition and beliefs. Yet, although he focused on individual beliefs, we argue in this paper that such beliefs are social constructs. We suggest that institutions – rules, expectations, and norms – are based on sharedcognitive rules. Cognitive rules are social constructs that convey information that distills and summarizes society's beliefs and experience. These rules have to be self-enforcing and self-confirming, but they do not have to be ‘correct’. We describe the characteristics of such rules in the context of a market for ideas, and illustrate their importance in two developments central to the growth of modern economies: the rise of the modern state with its legitimacy based on consent, and the rise of modern science-based technology that was the product of the scientific revolution and the Enlightenment.
Antipsychotic drug exposure and risk of myocardial infarction
Authors: Barbui C. , Gastaldon C. , Papola D. , Ostuzzi G.
Published: November 2016

Patients experiencing psychoses and in need of antipsychotic agents may be exposed to a higher risk of myocardial infarction (MI) than the general population. As there have been no randomised studies investigating this association, a recent systematic review and meta-analysis included all observational studies that compared the incidence of MI among patients receiving antipsychoticsv. no treatment. It found nine studies and calculated that the odds (risk) for developing MI were 1.88-fold higher in antipsychotic users compared with individuals who had not taken antipsychotic drugs. In this commentary, the results of this systematic review are discussed in view of their clinical implications for everyday clinical practice.
Brucellosis and thrombosis of the inferior vena cava
Authors: Rüegger Kristina , Tarr Philip , Karatolios Konstantinos , Humburg Jörg , Hügli Rolf , Jeanneret Christina
Published: November 2016

Abstract. We describe the case of a 23-year old woman with a newly diagnosed thrombosis of the inferior vena cava associated with a Brucella melitensis infection. We suggest possible mechanisms leading to brucellosis-associated venous thrombosis and review 14 previously reported cases.
A single heterochronic blood exchange reveals rapid inhibition of multiple tissues by old blood
Authors: Rebo Justin , Mehdipour Melod , Gathwala Ranveer , Causey Keith , Liu Yan , Conboy Michael J. , Conboy Irina M.
Published: November 2016

Heterochronic parabiosis rejuvenates the performance of old tissue stem cells at some expense to the young, but whether this is through shared circulation or shared organs is unclear. Here we show that heterochronic blood exchange between young and old mice without sharing other organs, affects tissues within a few days, and leads to different outcomes than heterochronic parabiosis. Investigating muscle, liver and brain hippocampus, in the presence or absence of muscle injury, we find that, in many cases, the inhibitory effects of old blood are more pronounced than the benefits of young, and that peripheral tissue injury compounds the negative effects. We also explore mechanistic explanations, including the role of B2M and TGF-beta. We conclude that, compared with heterochronic parabiosis, heterochronic blood exchange in small animals is less invasive and enables better-controlled studies with more immediate translation to therapies for humans.
The Hippo signalling pathway coordinates organ growth and limits developmental variability by controlling dilp8 expression
Authors: Boone Emilie , Colombani Julien , Andersen Ditte S. , Léopold Pierre
Published: November 2016

Coordination of organ growth during development is required to generate fit individuals with fixed proportions. We recently identified Drosophila Dilp8 as a key hormone in coupling organ growth with animal maturation. In addition, dilp8 mutant flies exhibit elevated fluctuating asymmetry (FA) demonstrating a function for Dilp8 in ensuring developmental stability. The signals regulating Dilp8 activity during normal development are not yet known. Here, we show that the transcriptional co-activators of the Hippo (Hpo) pathway, Yorkie (Yki, YAP/TAZ) and its DNA-binding partner Scalloped (Sd), directly regulate dilp8 expression through a Hpo-responsive element (HRE) in the dilp8 promoter. We further demonstrate that mutation of the HRE by genome-editing results in animals with increased FA, thereby mimicking full dilp8 loss of function. Therefore, our results indicate that growth coordination of organs is connected to their growth status through a feedback loop involving Hpo and Dilp8 signalling pathways.
Spray printing of organic semiconducting single crystals
Authors: Rigas Grigorios-Panagiotis , Payne Marcia M. , Anthony John E. , Horton Peter N. , Castro Fernando A. , Shkunov Maxim
Published: November 2016

Single-crystal semiconductors have been at the forefront of scientific interest for more than 70 years, serving as the backbone of electronic devices. Inorganic single crystals are typically grown from a melt using time-consuming and energy-intensive processes. Organic semiconductor single crystals, however, can be grown using solution-based methods at room temperature in air, opening up the possibility of large-scale production of inexpensive electronics targeting applications ranging from field-effect transistors and light-emitting diodes to medical X-ray detectors. Here we demonstrate a low-cost, scalable spray-printing process to fabricate high-quality organic single crystals, based on various semiconducting small molecules on virtually any substrate by combining the advantages of antisolvent crystallization and solution shearing. The crystals’ size, shape and orientation are controlled by the sheer force generated by the spray droplets’ impact onto the antisolvent’s surface. This method demonstrates the feasibility of a spray-on single-crystal organic electronics.
In-depth comparison of somatic point mutation callers based on different tumor next-generation sequencing depth data
Authors: Cai Lei , Yuan Wei , Zhang Zhou , He Lin , Chou Kuo-Chen
Published: November 2016

Four popular somatic single nucleotide variant (SNV) calling methods (Varscan, SomaticSniper, Strelka and MuTect2) were carefully evaluated on the real whole exome sequencing (WES, depth of ~50X) and ultra-deep targeted sequencing (UDT-Seq, depth of ~370X) data. The four tools returned poor consensus on candidates (only 20% of calls were with multiple hits by the callers). For both WES and UDT-Seq, MuTect2 and Strelka obtained the largest proportion of COSMIC entries as well as the lowest rate of dbSNP presence and high-alternative-alleles-in-control calls, demonstrating their superior sensitivity and accuracy. Combining different callers does increase reliability of candidates, but narrows the list down to very limited range of tumor read depth and variant allele frequency. Calling SNV on UDT-Seq data, which were of much higher read-depth, discovered additional true-positive variations, despite an even more tremendous growth in false positive predictions. Our findings not only provide valuable benchmark for state-of-the-art SNV calling methods, but also shed light on the access to more accurate SNV identification in the future.
Increasing entropy for colloidal stabilization
Authors: Mo Songping , Shao Xuefeng , Chen Ying , Cheng Zhengdong
Published: November 2016

Stability is of paramount importance in colloidal applications. Attraction between colloidal particles is believed to lead to particle aggregation and phase separation; hence, stability improvement can be achieved through either increasing repulsion or reducing attraction by modifying the fluid medium or by using additives. Two traditional mechanisms for colloidal stability are electrostatic stabilization and steric stabilization. However, stability improvement by mixing attractive and unstable particles has rarely been considered. Here, we emphasize the function of mixing entropy in colloidal stabilization. Dispersion stability improvement is demonstrated by mixing suspensions of attractive nanosized titania spheres and platelets. A three-dimensional phase diagram is proposed to illustrate the collaborative effects of particle mixing and particle attraction on colloidal stability. This discovery provides a novel method for enhancing colloidal stability and opens a novel opportunity for engineering applications.
Multi-level glyco-engineering techniques to generate IgG with defined Fc-glycans
Authors: Dekkers Gillian , Plomp Rosina , Koeleman Carolien A. M. , Visser Remco , von Horsten Hans H. , Sandig Volker , Rispens Theo , Wuhrer Manfred , Vidarsson Gestur
Published: November 2016

Immunoglobulin G (IgG) mediates its immune functions through complement and cellular IgG-Fc receptors (FcγR). IgG contains an evolutionary conserved N-linked glycan at position Asn297 in the Fc-domain. This glycan consists of variable levels of fucose, galactose, sialic acid, and bisecting N-acetylglucosamine (bisection). Of these variations, the lack of fucose strongly enhances binding to the human FcγRIII, a finding which is currently used to improve the efficacy of therapeutic monoclonal antibodies. The influence of the other glycan traits is largely unknown, mostly due to lack of glyco-engineering tools. We describe general methods to produce recombinant proteins of any desired glycoform in eukaryotic cells. Decoy substrates were used to decrease the level of fucosylation or galactosylation, glycosyltransferases were transiently overexpressed to enhance bisection, galactosylation and sialylation and in vitro sialylation
was applied for enhanced sialylation. Combination of these techniques enable to systematically explore the biological effect of these glycosylation traits for IgG and other glycoproteins.
Imaging Cellular Dynamics with Spectral Relaxation Imaging Microscopy: Distinct Spectral Dynamics in Golgi Membranes of Living Cells
Authors: Lajevardipour Alireza , Chon James W. M. , Chattopadhyay Amitabha , Clayton Andrew H. A.
Published: November 2016

Spectral relaxation from fluorescent probes is a useful technique for determining the dynamics of condensed phases. To this end, we have developed a method based on wide-field spectral fluorescence lifetime imaging microscopy to extract spectral relaxation correlation times of fluorescent probes in living cells. We show that measurement of the phase and modulation of fluorescence from two wavelengths permit the identification and determination of excited state lifetimes and spectral relaxation correlation times at a single modulation frequency. For NBD fluorescence in glycerol/water mixtures, the spectral relaxation correlation time determined by our approach exhibited good agreement with published dielectric relaxation measurements. We applied this method to determine the spectral relaxation dynamics in membranes of living cells. Measurements of the Golgi-specific C6-NBD-ceramide probe in living HeLa cells revealed sub-nanosecond spectral dynamics in the intracellular Golgi membrane and slower nanosecond spectral dynamics in the extracellular plasma membrane. We interpret the distinct spectral dynamics as a result of structural plasticity of the Golgi membrane relative to more rigid plasma membranes. To the best of our knowledge, these results constitute one of the first measurements of Golgi rotational dynamics.
In situ synthesis, enhanced luminescence and application in dye sensitized solar cells of Y2O3/Y2O2S:Eu3+ nanocomposites by reduction of Y2O3:Eu3+
Authors: Yuan Guohai , Li Mingxia , Yu Mingqi , Tian Chungui , Wang Guofeng , Fu Honggang
Published: November 2016

Y2O3/Y2O2S:Eu3+ nanocomposites were successfully prepared by reducing Y2O3:Eu3+ nanocrystals. The obtained Y2O3/Y2O2S:Eu3+ nanocomposites not only can emit enhanced red luminescence excited at 338 nm, but also can be used to improve the efficiency of the dye sensitized solar cells, resulting an efficiency of 8.38%, which is a noticeable enhancement of 12% compared to the cell without Y2O3/Y2O2S:Eu3+ nanocomposites. The results of the incident photon to current, dynamic light scattering, and diffuse reflectance spectra indicated that the enhancement of the cell efficiency was mainly related to the light scattering effect of Y2O3/Y2O2S:Eu3+ nanocomposites. As a phosphor powder, the emission at ~615 nm of Y2O3/Y2O2S:Eu3+ was split into two sub-bands. Compared with Y2O3:Eu3+, the 5D0 → 7F0 and 5D0 → 7F1 emissions of Y2O3/Y2O2S:Eu3+ showed a little red-shift.
Co-occurrence of Local Anisotropic Gradient Orientations (CoLlAGe): A new radiomics descriptor
Authors: Prasanna Prateek , Tiwari Pallavi , Madabhushi Anant
Published: November 2016

In this paper, we introduce a new radiomic descriptor, Co-occurrence of Local Anisotropic Gradient Orientations (CoLlAGe) for capturing subtle differences between benign and pathologic phenotypes which may be visually indistinguishable on routine anatomic imaging. CoLlAGe seeks to capture and exploit local anisotropic differences in voxel-level gradient orientations to distinguish similar appearing phenotypes. CoLlAGe involves assigning every image voxel an entropy value associated with the co-occurrence matrix of gradient orientations computed around every voxel. The hypothesis behind CoLlAGe is that benign and pathologic phenotypes even though they may appear similar on anatomic imaging, will differ in their local entropy patterns, in turn reflecting subtle local differences in tissue microarchitecture. We demonstrate CoLlAGe’s utility in three clinically challenging classification problems: distinguishing (1) radiation necrosis, a benign yet confounding effect of radiation treatment, from recurrent tumors on T1-w MRI in 42 brain tumor patients, (2) different molecular sub-types of breast cancer on DCE-MRI in 65 studies and (3) non-small cell lung cancer (adenocarcinomas) from benign fungal infection (granulomas) on 120 non-contrast CT studies. For each of these classification problems, CoLlAGE in conjunction with a random forest classifier outperformed state of the art radiomic descriptors (Haralick, Gabor, Histogram of Gradient Orientations).
Neural mechanisms underlying touch-induced visual perceptual suppression: An fMRI study
Authors: Ide Masakazu , Hidaka Souta , Ikeda Hanako , Wada Makoto
Published: November 2016

Crossmodal studies have demonstrated inhibitory as well as facilitatory neural effects in higher sensory association and primary sensory cortices. A recent human behavioral study reported touch-induced visual perceptual suppression (TIVS). Here, we introduced an experimental setting in which TIVS could occur and investigated brain activities underlying visuo-tactile interactions using a functional magnetic resonance imaging technique. While the suppressive effect of touch on vision was only found for half of the participants who could maintain their baseline performance above chance level (i.e. TIVS was not well replicated here), we focused on individual differences in the effect of touch on vision. This effect could be suppressive or enhancement, and the neuronal basis of these differences was analyzed. We found larger inhibitory responses in the anterior part of the right visual cortex (V1, V2) with higher TIVS magnitude when visuo-tactile stimuli were presented as spatially congruent. Activations in the right anterior superior temporal region, including the secondary somatosensory cortical area, were more strongly related to those in the visual cortex (V1, V2) with higher TIVS magnitude. These results indicate that inhibitory neural modulations from somatosensory to visual cortices and the resulting inhibitory neural responses in the visual cortex could be involved in TIVS.
Harnessing short poly(A)-binding protein-interacting peptides for the suppression of nonsense-mediated mRNA decay
Authors: Fatscher Tobias , Gehring Niels H.
Published: November 2016

Nonsense-mediated mRNA decay (NMD) is a cellular process that eliminates messenger RNA (mRNA) substrates with premature translation termination codons (PTCs). In addition, NMD regulates the expression of a number of physiological mRNAs, for example transcripts containing long 3′ UTRs. Current models implicate the interaction between cytoplasmic poly(A)-binding protein (PABPC1) and translation termination in NMD. Accordingly, PABPC1 present within close proximity of a termination codon antagonizes NMD. Here, we use reporter mRNAs with different NMD-inducing 3′ UTRs to establish a general NMD-inhibiting property of PABPC1. NMD-inhibition is not limited to PABPC1, but can also be achieved by peptides consisting of the PABP-interacting motif 2 (PAM2) of different proteins when recruited to an NMD-inhibiting position of NMD reporter transcripts. The short PAM2 peptides efficiently suppress NMD activated by a long 3′ UTR, an exon-junction complex (EJC) and individual EJC components, and stabilize a PTC-containing β-globin mRNA. In conclusion, our results establish short PABPC1-recruiting peptides as potent but position-dependent inhibitors of mammalian NMD.
Reduced dynamical maps in the presence of initial correlations
Authors: Vacchini Bassano , Amato Giulio
Published: November 2016

We introduce a framework for the construction of completely positive dynamical evolutions in the presence of system-environment initial correlations. The construction relies upon commutativity of the compatibility domain obtained by considering the marginals with respect to the environmental degrees of freedom of the considered class of correlated states, as well as basic properties of completely positive maps. Our approach allows to consider states that can have finite discord, though it does not include entangled states, and it explicitly shows the non-uniqueness of the completely positive extensions of the obtained dynamical map outside the compatibility domain. The possible relevance of such maps for the treatment of open quantum system dynamics is critically discussed, together with the connection to previous literature.
Exploring Spatio-temporal Dynamics of Cellular Automata for Pattern Recognition in Networks
Authors: Miranda Gisele Helena Barboni , Machicao Jeaneth , Bruno Odemir Martinez
Published: November 2016

Network science is an interdisciplinary field which provides an integrative approach for the study of complex systems. In recent years, network modeling has been used for the study of emergent phenomena in many real-world applications. Pattern recognition in networks has been drawing attention to the importance of network characterization, which may lead to understanding the topological properties that are related to the network model. In this paper, the Life-Like Network Automata (LLNA) method is introduced, which was designed for pattern recognition in networks. LLNA uses the network topology as a tessellation of Cellular Automata (CA), whose dynamics produces a spatio-temporal pattern used to extract the feature vector for network characterization. The method was evaluated using synthetic and real-world networks. In the latter, three pattern recognition applications were used: (i) identifying organisms from distinct domains of life through their metabolic networks, (ii) identifying online social networks and (iii) classifying stomata distribution patterns varying according to different lighting conditions. LLNA was compared to structural measurements and surpasses them in real-world applications, achieving improvement in the classification rate as high as 23%, 4% and 7% respectively. Therefore, the proposed method is a good choice for pattern recognition applications using networks and demonstrates potential for general applicability.
Beyond Antibodies: Development of a Novel Protein Scaffold Based on Human Chaperonin 10
Authors: Alsultan Abdulkarim M. , Chin David Y. , Howard Christopher B. , de Bakker Christopher J. , Jones Martina L. , Mahler Stephen M.
Published: November 2016

Human Chaperonin 10 (hCpn10) was utilised as a novel scaffold for presenting peptides of therapeutic and diagnostic significance. Molecular dynamic simulations and protein sizing analyses identified a peptide linker (P1) optimal for the formation of the quarternary hCpn10 heptamer structure. hCpn10 scaffold displaying peptides targeting Factor VIIa (CE76-P1) and CD44 (CP7) were expressed in E. coli. Functional studies of CE76-P1 indicated nanomolar affinity for Factor VIIa (3 nM) similar to the E-76 peptide (6 nM), with undetectable binding to Factor X. CE76-P1 was a potent inhibitor of FX activity (via inhibition of Factor VIIa) and prolonged clot formation 4 times longer than achieved by E-76 peptide as determined by prothrombin time (PT) assays. This improvement in clotting function by CE76-P1, highlights the advantages of a heptamer-based scaffold for improving avidity by multiple peptide presentation. In another example of hCPn10 utility as a scaffold, CP7 bound to native CD44 overexpressed on cancer cells and bound rCD44 with high affinity (KD 9.6 nM). The ability to present various peptides through substitution of the hCpn10 mobile loop demonstrates its utility as a novel protein scaffold.
Circulating long-non coding RNAs as biomarkers of left ventricular diastolic function and remodelling in patients with well-controlled type 2 diabetes
Authors: de Gonzalo-Calvo D. , Kenneweg F. , Bang C. , Toro R. , van der Meer R. W. , Rijzewijk L. J. , Smit J. W. , Lamb H. J. , Llorente-Cortes V. , Thum T.
Published: November 2016

Contractile dysfunction is underdiagnosed in early stages of diabetic cardiomyopathy. We evaluated the potential of circulating long non-coding RNAs (lncRNAs) as biomarkers of subclinical cardiac abnormalities in type 2 diabetes. Forty-eight men with well-controlled type 2 diabetes and 12 healthy age-matched volunteers were enrolled in the study. Left ventricular (LV) parameters were measured by magnetic resonance imaging. A panel of lncRNAs was quantified in serum by RT-qPCR. No differences in expression levels of lncRNAs were observed between type 2 diabetes patients and healthy volunteers. In patients with type 2 diabetes, long intergenic non-coding RNA predicting cardiac remodeling (LIPCAR) was inversely associated with diastolic function, measured as E/A peak flow (P < 0.050 for all linear models). LIPCAR was positively associated with grade I diastolic dysfunction (P < 0.050 for all logistic models). Myocardial infarction-associated transcript (MIAT) and smooth muscle and endothelial cell-enriched migration/differentiation-associated long noncoding RNA (SENCR) were directly associated with LV mass to LV end-diastolic volume ratio, a marker of cardiac remodelling (P < 0.050 for all linear models). These findings were validated in a sample of 30 patients with well-controlled type 2 diabetes. LncRNAs are independent predictors of diastolic function and remodelling in patients with type 2 diabetes.
Bandgap tuning of mixed organic cation utilizing chemical vapor deposition process
Authors: Kim Jeongmo , Kim Hyeong Pil , Teridi Mohd Asri Mat , Yusoff Abd. Rashid bin Mohd , Jang Jin
Published: November 2016

Bandgap tuning of a mixed organic cation perovskite is demonstrated via chemical vapor deposition process. The optical and electrical properties of the mixed organic cation perovskite can be manipulated by varying the growth time. A slight shift of the absorption band to shorter wavelengths is demonstrated with increasing growth time, which results in the increment of the current density. Hence, based on the optimized growth time, our device exhibits an efficiency of 15.86% with negligible current hysteresis.
Ultra-broadband Reflective Metamaterial with RCS Reduction based on Polarization Convertor, Information Entropy Theory and Genetic Optimization Algorithm
Authors: Li Si Jia , Cao Xiang Yu , Xu Li Ming , Zhou Long Jian , Yang Huan Huan , Han Jiang Feng , Zhang Zhao , Zhang Di , Liu Xiao , Zhang Chen , Zheng Yue Jun , Zhao Yi
Published: November 2016

We proposed an ultra-broadband reflective metamaterial with controlling the scattering electromagnetic fields based on a polarization convertor. The unit cell of the polarization convertor was composed of a three layers substrate with double metallic split-rings structure and a metal ground plane. The proposed polarization convertor and that with rotation angle of 90 deg had been employed as the “0” and “1” elements to design the digital reflective metamaterial. The numbers of the “0” and “1” elements were chosen based on the information entropy theory. Then, the optimized combinational format was selected by genetic optimization algorithm. The scattering electromagnetic fields had been manipulated due to destructive interference, which was attributed to the control of phase and amplitude by the proposed polarization convertor. Simulated and experimental results indicated that the reflective metamaterial exhibited significantly RCS reduction in an ultra-broad frequency band for both normal and oblique incidences.
Morphological and proteomic analysis of biofilms from the Antarctic archaeon, Halorubrum lacusprofundi
Authors: Liao Y. , Williams T. J. , Ye J. , Charlesworth J. , Burns B. P. , Poljak A. , Raftery M. J. , Cavicchioli R.
Published: November 2016

Biofilms enhance rates of gene exchange, access to specific nutrients, and cell survivability. Haloarchaea in Deep Lake, Antarctica, are characterized by high rates of intergenera gene exchange, metabolic specialization that promotes niche adaptation, and are exposed to high levels of UV-irradiation in summer. Halorubrum lacusprofundi from Deep Lake has previously been reported to form biofilms. Here we defined growth conditions that promoted the formation of biofilms and used microscopy and enzymatic digestion of extracellular material to characterize biofilm structures. Extracellular DNA was found to be critical to biofilms, with cell surface proteins and quorum sensing also implicated in biofilm formation. Quantitative proteomics was used to define pathways and cellular processes involved in forming biofilms; these included enhanced purine synthesis and specific cell surface proteins involved in DNA metabolism; post-translational modification of cell surface proteins; specific pathways of carbon metabolism involving acetyl-CoA; and specific responses to oxidative stress. The study provides a new level of understanding about the molecular mechanisms involved in biofilm formation of this important member of the Deep Lake community.
Super-enhancement of 1.54 μm emission from erbium codoped with oxygen in silicon-on-insulator
Authors: Lourenço M. A. , Milošević M. M. , Gorin A. , Gwilliam R. M. , Homewood K. P.
Published: November 2016

We report on the super enhancement of the 1.54 μm Er emission in erbium doped silicon-on-insulator when codoped with oxygen at a ratio of 1:1. This is attributed to a more favourable crystal field splitting in the substitutional tetrahedral site favoured for the singly coordinated case. The results on these carefully matched implant profiles show that optical response is highly determined by the amount and ratio of erbium and oxygen present in the sample and ratios of O:Er greater than unity are severely detrimental to the Er emission. The most efficient luminescence is forty times higher than in silicon-on-insulator implanted with Er only. This super enhancement now offers a realistic route not only for optical communication applications but also for the implementation of silicon photonic integrated circuits for sensing, biomedical instrumentation and quantum communication.
Automatic Identification of Systolic Time Intervals in Seismocardiogram
Authors: Shafiq Ghufran , Tatinati Sivanagaraja , Ang Wei Tech , Veluvolu Kalyana C.
Published: November 2016

Continuous and non-invasive monitoring of hemodynamic parameters through unobtrusive wearable sensors can potentially aid in early detection of cardiac abnormalities, and provides a viable solution for long-term follow-up of patients with chronic cardiovascular diseases without disrupting the daily life activities. Electrocardiogram (ECG) and siesmocardiogram (SCG) signals can be readily acquired from light-weight electrodes and accelerometers respectively, which can be employed to derive systolic time intervals (STI). For this purpose, automated and accurate annotation of the relevant peaks in these signals is required, which is challenging due to the inter-subject morphological variability and noise prone nature of SCG signal. In this paper, an approach is proposed to automatically annotate the desired peaks in SCG signal that are related to STI by utilizing the information of peak detected in the sliding template to narrow-down the search for the desired peak in actual SCG signal. Experimental validation of this approach performed in conventional/controlled supine and realistic/challenging seated conditions, containing over 5600 heart beat cycles shows good performance and robustness of the proposed approach in noisy conditions. Automated measurement of STI in wearable configuration can provide a quantified cardiac health index for long-term monitoring of patients, elderly people at risk and health-enthusiasts.
Multifunctional single beam acoustic tweezer for non-invasive cell/organism manipulation and tissue imaging
Authors: Lam Kwok Ho , Li Ying , Li Yang , Lim Hae Gyun , Zhou Qifa , Shung Koping Kirk
Published: November 2016

Non-contact precise manipulation of single microparticles, cells, and organisms has attracted considerable interest in biophysics and biomedical engineering. Similar to optical tweezers, acoustic tweezers have been proposed to be capable of manipulating microparticles and even cells. Although there have been concerted efforts to develop tools for non-contact manipulation, no alternative to complex, unifunctional tweezer has yet been found. Here we report a simple, low-cost, multifunctional single beam acoustic tweezer (SBAT) that is capable of manipulating an individual micrometer scale non-spherical cell at Rayleigh regime and even a single millimeter scale organism at Mie regime, and imaging tissue as well. We experimentally demonstrate that the SBAT with an ultralow f-number (f# = focal length/aperture size) could manipulate an individual red blood cell and a single 1.6 mm-diameter fertilized Zebrafish egg, respectively. Besides, in vitro rat aorta images were collected successfully at dynamic foci in which the lumen and the outer surface of the aorta could be clearly seen. With the ultralow f-number, the SBAT offers the combination of large acoustic radiation force and narrow beam width, leading to strong trapping and high-resolution imaging capabilities. These attributes enable the feasibility of using a single acoustic device to perform non-invasive multi-functions simultaneously for biomedical and biophysical applications.
Waterborne aripiprazole blunts the stress response in zebrafish
Authors: Barcellos Heloísa Helena de Alcantara , Kalichak Fabiana , da Rosa João Gabriel Santos , Oliveira Thiago Acosta , Koakoski Gessi , Idalencio Renan , de Abreu Murilo Sander , Giacomini Ana Cristina Varrone , Fagundes Michele , Variani Cristiane , Rossini Mainara , Piato Angelo L , Barcellos Leonardo José Gil
Published: November 2016

Here we provide, at least to our knowledge, the first evidence that aripiprazole (APPZ) in the water blunts the stress response of exposed fish in a concentration ten times lower than the concentration detected in the environment. Although the mechanism of APPZ in the neuroendocrine axis is not yet determined, our results highlight that the presence of APPZ residues in the environment may interfere with the stress responses in fish. Since an adequate stress response is crucial to restore fish homeostasis after stressors, fish with impaired stress response may have trouble to cope with natural and/or imposed stressors with consequences to their welfare and survival.
Patterns in longitudinal growth of refraction in Southern Chinese children: cluster and principal component analysis
Authors: Chen Yanxian , Chang Billy Heung Wing , Ding Xiaohu , He Mingguang
Published: November 2016

In the present study we attempt to use hypothesis-independent analysis in investigating the patterns in refraction growth in Chinese children, and to explore the possible risk factors affecting the different components of progression, as defined by Principal Component Analysis (PCA). A total of 637 first-born twins in Guangzhou Twin Eye Study with 6-year annual visits (baseline age 7–15 years) were available in the analysis. Cluster 1 to 3 were classified after a partitioning clustering, representing stable, slow and fast progressing groups of refraction respectively. Baseline age and refraction, paternal refraction, maternal refraction and proportion of two myopic parents showed significant differences across the three groups. Three major components of progression were extracted using PCA: “Average refraction”, “Acceleration” and the combination of “Myopia stabilization” and “Late onset of refraction progress”. In regression models, younger children with more severe myopia were associated with larger “Acceleration”. The risk factors of “Acceleration” included change of height and weight, near work, and parental myopia, while female gender, change of height and weight were associated with “Stabilization”, and increased outdoor time was related to “Late onset of refraction progress”. We therefore concluded that genetic and environmental risk factors have different impacts on patterns of refraction progression.
Development and comparative study of chemosynthesized antigen and mimotope-based immunoassays for class-specific analysis of O,O-dimethyl organophosphorus pesticides
Authors: Zhao Fengchun , Wang Huimin , Han Xiao , Yang Zhengyou
Published: November 2016

The multi-residue determination of organophosphorus pesticides (OPs) is an important task due to the wide application and high toxicity of OPs. However, there is no promising immunoassay to monitor the multi-residue of O,O-dimethyl OPs. In this study, a monoclonal antibody (mAb) against a generic hapten of O,O-dimethyl OPs (O,O-dimethyl O-(3-carboxyphenyl)phosphorothioate) was prepared. To develop an effective class-specific immunoassay, two strategies were performed to select the appropriate coating antigen or competing antigen. On the one hand, a total of 20 haptens were chemosynthesized, attached to ovalbumin for use as coating antigen candidates, and selected by direct competitive ELISA (dcELISA). As a second strategy, mimotopes of the mAb were selected from a random phage-display peptide library by panning, and the optimum mimotope was expressed as a fusion protein and biotinylated in vitro. Based on the selected chemosynthesized coating antigen and the biotinylated mimotope fusion protein, two sensitive broad-specificity dcELISAs were developed. The sensitivity, selectivity and practicability of the two immunoassays were compared. The results demonstrated that both methods showed similar selectivity and sensitivity and were reliable for O,O-dimethyl OP residues screening. However, the screening operation of mimotopes was much simpler and safer compared to the preparation of chemosynthesized coating antigens.
The response of the soil microbial food web to extreme rainfall under different plant systems
Authors: Sun Feng , Pan Kaiwen , Tariq Akash , Zhang Lin , Sun Xiaoming , Li Zilong , Wang Sizhong , Xiong Qinli , Song Dagang , Olatunji Olusanya Abiodun
Published: November 2016

An agroforestry experiment was conducted that involved four planting systems: monoculture of the focal species Zanthoxylum bungeanum and mixed cultures of Z. bungeanum and Capsicum annuum, Z. bungeanum and Medicago sativa and Z. bungeanum and Glycine max. Soil microbial food web (microorganisms and nematodes) was investigated under manipulated extreme rainfall in the four planting systems to assess whether presence of neighbor species alleviated the magnitude of extreme rainfall on nutrient uptake of the focal species by increasing the stability of soil food web. Our results indicate that in the focal species and G. max mixed culture, leaf nitrogen contents of the focal species were higher than in the monoculture and in the other mixed cultures under extreme rainfall. This result was mainly due to the significant increase under extreme rainfall of G. max species root biomass, resulting in enhanced microbial resistance and subsequent net nitrogen mineralization rate and leaf nitrogen uptake for the focal species. Differences in functional traits of neighbors had additive effects and led to a marked divergence of soil food-web resistance and nutrient uptake of the focal species. Climate change can indirectly alleviate focal species via its influence on their neighbors.
Early changes in emotional processing as a marker of clinical response to SSRI treatment in depression
Authors: Godlewska B R , Browning M , Norbury R , Cowen P J , Harmer C J
Published: November 2016

Antidepressant treatment reduces behavioural and neural markers of negative emotional bias early in treatment and has been proposed as a mechanism of antidepressant drug action. Here, we provide a critical test of this hypothesis by assessing whether neural markers of early emotional processing changes predict later clinical response in depression. Thirty-five unmedicated patients with major depression took the selective serotonin re-uptake inhibitor (SSRI), escitalopram (10 mg), over 6 weeks, and were classified as responders (22 patients) versus non-responders (13 patients), based on at least a 50% reduction in symptoms by the end of treatment. The neural response to fearful and happy emotional facial expressions was assessed before and after 7 days of treatment using functional magnetic resonance imaging. Changes in the neural response to these facial cues after 7 days of escitalopram were compared in patients as a function of later clinical response. A sample of healthy controls was also assessed. At baseline, depressed patients showed greater activation to fear versus happy faces than controls in the insula and dorsal anterior cingulate. Depressed patients who went on to respond to the SSRI had a greater reduction in neural activity to fearful versus happy facial expressions after just 7 days of escitalopram across a network of regions including the anterior cingulate, insula, amygdala and thalamus. Mediation analysis confirmed that the direct effect of neural change on symptom response was not mediated by initial changes in depressive symptoms. These results support the hypothesis that early changes in emotional processing with antidepressant treatment are the basis of later clinical improvement. As such, early correction of negative bias may be a key mechanism of antidepressant drug action and a potentially useful predictor of therapeutic response.
Diastereoselective construction of cyclopent-2-enone-4-ols from aldehydes and 1,2-allenones catalyzed by N-heterocyclic carbene
Authors: Ma Dengke , Fu Chunling , Ma Shengming
Published: November 2016

A highly diastereoselective approach to cyclopent-2-enone-4-ols from readily available aromatic aldehydes and 1,2-allenones has been developed.
The role of the binding salt sodium salicylate in semidilute ionic cetylpyridinium chloride micellar solutions: a rheological and scattering study
Authors: Gaudino D. , Pasquino R. , Stellbrink J. , Szekely N. , Krutyeva M. , Radulescu A. , Pyckhout-Hintzen W. , Grizzuti N.
Published: November 2016

The viscosity varies as a consequence of binding, first, and screening, later, action of the penetrating salt.
Drop coating deposition of a liposome suspension on surfaces with different wettabilities: “coffee ring” formation and suspension preconcentration
Authors: Kočišová Eva , Petr Martin , Šípová Hana , Kylián Ondřej , Procházka Marek
Published: November 2016

A study of “coffee ring” formation and preconcentration of a liposome suspension dropped on six surfaces with different physico-chemical characteristics.