bluuebunny/crossref_metadata_2025 huggingface dataset:
Estimating the storage of anthropogenic carbon in the subtropical Indian Ocean: a comparison of five different approaches
Authors: Álvarez M. , Lo Monaco C. , Tanhua T. , Yool A. , Oschlies A. , Bullister J. L. , Goyet C. , Metzl N. , Touratier F. , McDonagh E. , Bryden H. L.
Published: April 2010

Abstract. The subtropical Indian Ocean along 32° S was for the first time simultaneously sampled in 2002 for inorganic carbon and transient tracers. The vertical distribution and inventory of anthropogenic carbon (CANT) from five different methods: four data-base methods (ΔC*, TrOCA, TTD and IPSL) and a simulation from the OCCAM model are compared and discussed along with the observed CFC-12 and CCl4 distributions. In the surface layer, where carbon-based methods are uncertain, TTD and OCCAM yield the same result (7±0.2 molC m−2), helping to specify the surface CANT inventory. Below the mixed-layer, the comparison suggests that CANT penetrates deeper and more uniformly into the Antarctic Intermediate Water layer limit than estimated from the much utilized ΔC* method. Significant CFC-12 and CCl4 values are detected in bottom waters, associated with Antarctic Bottom Water. In this layer, except for ΔC* and OCCAM, the other methods detect significant CANT values. Consequently, the lowest inventory is calculated using the ΔC* method (24±2 molC m−2) or OCCAM (24.4±2.8 molC m−2) while TrOCA, TTD, and IPSL lead to higher inventories (28.1±2.2, 28.9±2.3 and 30.8±2.5 molC m−2 respectively). Overall and despite the uncertainties each method is evaluated using its relationship with tracers and the knowledge about water masses in the subtropical Indian Ocean. Along 32° S our best estimate for the mean CANT specific inventory is 28±2 molC m−2. Comparison exercises for data-based CANT methods along with time-series or repeat sections analysis should help to identify strengths and caveats in the CANT methods and to better constrain model simulations.
Quantitative observation of cyanobacteria and diatoms from space using PhytoDOAS on SCIAMACHY data
Authors: Bracher A. , Vountas M. , Dinter T. , Burrows J. P. , Röttgers R. , Peeken I.
Published: April 2010

Abstract. In this study the technique of Differential Optical Absorption Spectroscopy (DOAS) has been adapted for the retrieval of the absorption and biomass of two major phytoplankton groups (PhytoDOAS) from data of the Scanning Imaging Absorption Spectrometer for Atmospheric Chartography (SCIAMACHY) satellite sensor. SCIAMACHY measures back scattered solar radiation in the UV-Vis-NIR spectral regions with a high spectral resolution (0.2 to 1.5 nm). In order to identify phytoplankton absorption characteristics in the SCIAMACHY data in the range of 430 to 500 nm, phytoplankton absorption spectra measured in-situ during two different RV "Polarstern" expeditions were used. The two spectra have been measured in different ocean regions where different phytoplankton groups (cyanobacteria and diatoms) dominated the phytoplankton composition. Results clearly show distinct absorption characteristics of the two phytoplankton groups in the SCIAMACHY spectra. Using these results in addition to calculations of the light penetration depth derived from DOAS retrievals of the inelastic scattering (developed by Vountas et al., 2007), globally distributed pigment concentrations for these characteristic phytoplankton groups for two monthly periods (February–March 2004 and October–November 2005) were determined. This satellite information on cyanobacteria and diatoms distribution clearly matches the concentrations based on high pressure liquid chromatography (HPLC) pigment analysis of collocated water samples and concentrations derived from a global model analysis with the NASA Ocean Biogeochemical Model (Gregg et al., 2003; Gregg and Casey 2007). The quantitative assessment of the distribution of key phytoplankton groups from space enables various biogeochemical regions to be distinguished and will be of great importance for the global modeling of marine ecosystems and biogeochemical cycles which enables the impact of climate change in the oceanic biosphere to be estimated.
Mercury concentrations and pools in four Sierra Nevada forest sites, and relationships to organic carbon and nitrogen
Authors: Obrist D. , Johnson D. W. , Lindberg S. E.
Published: April 2010

Abstract. This study presents data on mercury (Hg) concentrations, stochiometric relations to carbon (C) and nitrogen (N), and Hg pool sizes in four Sierra Nevada forest sites of similar exposure and precipitation regimes, and hence similar atmospheric deposition, to evaluate how ecosystem parameters control Hg retention in ecosystems. In all four sites, the largest amounts of Hg reside in soils which account for 94–98% of ecosystem pools. Hg concentrations and Hg/C ratios increase in the following order: Green Needles/Leaves<Dry Needles/Leaves<Oi litter<Oe litter<Oa litter. Stochiometric relations show negative correlations between Hg and C (r2=0.58) and N and C (r2=0.64) in decomposing litter, but a positive correlation between litter Hg and N (r2=0.70). These inverse relations may reflect preferential retention of N and Hg over C during decomposition, or may be due to older age of decomposed litter layers which are exposed to longer-term atmospheric Hg deposition in the field. The results indicate that litter Hg levels depend on decomposition stage and may not follow generally observed positive relationships between Hg and organic C. Mineral soil layers show strong positive correlations of Hg to C across all sites and soil horizons (r2=0.83), but Hg concentrations are even more closely related to N with a similar slope to that observed in litter (r2=0.92). Soil N levels alone explain over 90% of Hg pool sizes across the four Sierra Nevada forest sites. This suggests that soil organic N and C groups provide sorption sites for Hg to retain atmospheric deposition. However, the patterns could be due to indirect relationships where high soil N and C levels reflect high ecosystem productivity which leads to corresponding high atmospheric Hg deposition inputs via leaf litterfall and plant senescence. Our results also show that two of the sites previously affected by prescribed burning and wildfires show significant depletion of above-ground Hg pools but that belowground Hg pools remain unaffected. We conclude that sequestration of Hg in remote Sierra Nevada forest sites is strongly co-determined by ecosystem parameters with C and N pools being excellent determinants for the pool sizes of Hg.
Ammonia fluxes in relation to cutting and fertilization of an intensively managed grassland derived from an inter-comparison of gradient measurements
Authors: Milford C. , Theobald M. R. , Nemitz E. , Hargreaves K. J. , Horvath L. , Raso J. , Dämmgen U. , Neftel A. , Jones S. K. , Hensen A. , Loubet B. , Cellier P. , Sutton M. A.
Published: April 2010

Abstract. Quantification of ammonia (NH3) land-atmosphere exchange is required for atmospheric modelling and assessment of nitrogen deposition, yet flux measurement methods remain highly uncertain. To address this issue, a major inter-comparison of ammonia fluxes over intensively managed grassland was conducted during the GRAMINAE Integrated Experiment held in Braunschweig, Germany. In order to provide a robust dataset of ammonia exchange with the vegetation, four independent continuous flux gradient systems were operated. Three independently operated continuous wet denuders systems (AMANDA) were compared with a Wet Effluent Diffusion Denuder (mini-WEDD) system. Measurements were made at two distances from an adjacent livestock farm, allowing effects of advection to be quantified in a real landscape setting. Data treatment included filtering for instrument failure, disturbed wind sectors and unsuitable micrometeorological conditions, with corrections made for storage and advection errors. The inter-comparison demonstrated good agreement in measured ammonia concentrations and fluxes (relative standard error <20%) for some periods, although the performance of the ammonia analyzers were variable, with much poorer agreement on particular days. However, by using four systems, the inter-comparison was able to provide a robust mean estimate of continuous ammonia fluxes through the experiment. The observed fluxes were: a) small bi-directional fluxes prior to cutting (−64 to 42 ng NH3 m−2 s−1), b) larger diurnally-varying emissions following cutting (−49 to 703 ng NH3 m−2 s−1) and c) much larger emissions following fertilizer application (0 to 3820 ng NH3 m−2 s−1). The results are a salutary reminder of the uncertainty in unreplicated ammonia flux measurements, while the replication of the present study provides a uniquely robust dataset for the evaluation of ammonia exchange processes. It is clear that consistently reliable determination of ammonia concentrations remains the major measurement challenge.
Rapid reorganization in ocean biogeochemistry off Peru towards the end of the Little Ice Age
Authors: Gutiérrez D. , Sifeddine A. , Field D. B. , Ortlieb L. , Vargas G. , Chávez F. P. , Velazco F. , Ferreira V. , Tapia P. , Salvatteci R. , Boucher H. , Morales M. C. , Valdés J. , Reyss J.-L. , Campusano A. , Boussafir M. , Mandeng-Yogo M. , García M. , Baumgartner T.
Published: April 2010

Abstract. Climate and ocean ecosystem variability has been well recognized during the twentieth century but it is unclear if modern ocean biogeochemistry is susceptible to the large, abrupt shifts that characterized the Late Quaternary. Time series from marine sediments off Peru show an abrupt centennial-scale biogeochemical regime shift in the early nineteenth century, of much greater magnitude and duration than present day multi-decadal variability. A rapid expansion of the subsurface nutrient-rich, oxygen-depleted waters resulted in the present-day higher biological productivity, including pelagic fish. The shift was likely driven by a northward migration of the Intertropical Convergence Zone and the South Pacific Subtropical High to their present day locations, coupled with a strengthening of Walker circulation, towards the end of the Little Ice Age. These findings reveal the potential for large reorganizations in tropical Pacific climate with immediate effects on ocean biogeochemical cycling and ecosystem structure.
Annual and diurnal african biomass burning temporal dynamics
Authors: Roberts G. , Wooster M. J. , Lagoudakis E.
Published: April 2010

Abstract. Africa is the single largest continental source of biomass burning emissions. Here we conduct the first analysis of one full year of geostationary active fire detections and fire radiative power data recorded over Africa at 15-min temporal interval and a 3 km sub-satellite spatial resolution by the Spinning Enhanced Visible and Infrared Imager (SEVIRI) imaging radiometer onboard the Meteosat-8 satellite. We use these data to provide new insights into the rates and totals of open biomass burning over Africa, particularly into the extremely strong seasonal and diurnal cycles that exist across the continent. We estimate peak daily biomass combustion totals to be 9 and 6 million tonnes of fuel per day in the northern and southern hemispheres respectively, and total fuel consumption between February 2004 and January 2005 is estimated to be at least 855 million tonnes. Analysis is carried out with regard to fire pixel temporal persistence, and we note that the majority of African fires are detected only once in consecutive 15 min imaging slots. An investigation of the variability of the diurnal fire cycle is carried out with respect to 20 different land cover types, and whilst differences are noted between land covers, the fire diurnal cycle characteristics for most land cover type are very similar in both African hemispheres. We compare the Fire Radiative Power (FRP) derived biomass combustion estimates to burned-areas, both at the scale of individual fires and over the entire continent at a 1-degree scale. Fuel consumption estimates are found to be less than 2 kg/m2 for all land cover types noted to be subject to significant fire activity, and for savanna grasslands where literature values are commonly reported the FRP-derived median fuel consumption estimate of 300 g/m2 is well within commonly quoted values. Meteosat-derived FRP data of the type presented here is now available freely to interested users continuously and in near real-time for Africa, Europe and parts of South America via the EUMETSAT (European Organisation for the Exploitation of Meteorological Satellites) Land Surface Analysis Satellite Applications Facility (http://landsaf.meteo.pt/). Continuous generation of these products will allow the types of analysis presented in this paper to be improved and extended, and such multi-year records should allow relationships between climate, fire and fuel to be further examined.
Sinking rates and ballast composition of particles in the Atlantic Ocean: implications for the organic carbon fluxes to the deep ocean
Authors: Fischer G. , Karakaş G.
Published: April 2010

Abstract. The flux of materials to the deep sea is dominated by larger, organic-rich particles with sinking rates varying between a few meters and several hundred meters per day. Mineral ballast may regulate the transfer of organic matter and other components by determining the sinking rates, e.g. via particle density. We calculated particle sinking rates from mass flux patterns and alkenone measurements applying the results of sediment trap experiments from the Atlantic Ocean. We have indication for higher particle sinking rates in carbonate-dominated production systems when considering both regional and seasonal data. During a summer coccolithophorid bloom in the Cape Blanc coastal upwelling off Mauritania, particle sinking rates reached almost 570 m per day, most probably due the fast sedimentation of densely packed zooplankton fecal pellets, which transport high amounts of organic carbon associated with coccoliths to the deep ocean despite rather low production. During the recurring winter-spring blooms off NW Africa and in opal-rich production systems of the Southern Ocean, sinking rates of larger particles, most probably diatom aggregates, showed a tendency to lower values. However, there is no straightforward relationship between carbonate content and particle sinking rates. This could be due to the unknown composition of carbonate and/or the influence of particle size and shape on sinking rates. It also remains noticeable that the highest sinking rates occurred in dust-rich ocean regions off NW Africa, but this issue deserves further detailed field and laboratory investigations. We obtained increasing sinking rates with depth. By using a seven-compartment biogeochemical model, it was shown that the deep ocean organic carbon flux at a mesotrophic sediment trap site off Cape Blanc can be captured fairly well using seasonal variable particle sinking rates. Our model provides a total organic carbon flux of 0.29 Tg per year down to 3000 m off the NW African upwelling region between 5 and 35° N. Simple parameterisations of remineralisation and sinking rates in such models, however, limit their capability in reproducing the flux variation in the water column.
Primary production during nutrient-induced blooms at elevated CO2 concentrations
Authors: Egge J. K. , Thingstad T. F. , Larsen A. , Engel A. , Wohlers J. , Bellerby R. G. J. , Riebesell U.
Published: April 2010

Abstract. A CO2 enrichment experiment (PeECE III) was carried out in 9 mesocosms in which the seawater carbonate system was manipulated to achieve three different levels of pCO2. At the onset of the experimental period, nutrients were added to all mesocosms in order to initiate phytoplankton blooms. Primary production rates were measured by in-vitro incubations based on 14C-incorporation and oxygen production/consumption. Size fractionated particulate primary production was also determined by 14C incubation and is discussed in relation to phytoplankton composition. Primary production rates increased in response to nutrient addition and a net autotrophic phase with 14C-fixation rates up to 4 times higher than initial was observed midway through the 24 days experiment before net community production (NCP) returned to near-zero and 14C-fixation rates dropped below initial values. No clear heterotrophic phase was observed during the experiment. Based on the 14C-measurements we found higher cumulative primary production at higher pCO2 towards the end of the experiment. CO2 related differences were also found in size fractionated primary production. The most noticeable responses to CO2 treatments with respect to primary production rates occurred in the second half of the experiment when phytoplankton growth had become nutrient limited, and the phytoplankton community changed from diatom to flagellate dominance. This opens for two alternative hypotheses that the effects are either associated with mineral nutrient limited growth, and/or with a change in phytoplankton species composition. The lack of a clear net heterotrophic phase in the last part of the experiment supports the idea that a substantial part of production in the upper layer was not degraded locally, but either accumulated or exported vertically.
Terrestrial carbon sinks in the Brazilian Amazon and Cerrado region predicted from MODIS satellite data and ecosystem modeling
Authors: Potter C. , Klooster S. , Huete A. , Genovese V. , Bustamante M. , Guimaraes Ferreira L. ,   R. C. de Oliveira Jr., Zepp R.
Published: April 2010

Abstract. A simulation model based on satellite observations of monthly vegetation cover from the Moderate Resolution Imaging Spectroradiometer (MODIS) was used to estimate monthly carbon fluxes in terrestrial ecosystems of Brazilian Amazon and Cerrado regions over the period 2000–2004. Net ecosystem production (NEP) flux for atmospheric CO2 in the region for these years was estimated. Consistently high carbon sink fluxes in terrestrial ecosystems on a yearly basis were found in the western portions of the states of Acre and Rondônia and the northern portions of the state of Pará. These areas were not significantly impacted by the 2002–2003 El Niño event in terms of net annual carbon gains. Areas of the region that show periodically high carbon source fluxes from terrestrial ecosystems to the atmosphere on yearly basis were found throughout the state of Maranhão and the southern portions of the state of Amazonas. As demonstrated though tower site comparisons, NEP modeled with monthly MODIS Enhanced Vegetation Index (EVI) inputs closely resembles the measured seasonal carbon fluxes at the LBA Tapajos tower site. Modeling results suggest that the capacity for use of MODIS Enhanced Vegetation Index (EVI) data to predict seasonal uptake rates of CO2 in Amazon forests and Cerrado woodlands is strong.
Incorporation of crop phenology in Simple Biosphere Model (SiBcrop) to improve land-atmosphere carbon exchanges from croplands
Authors: Lokupitiya E. , Denning S. , Paustian K. , Baker I. , Schaefer K. , Verma S. , Meyers T. , Bernacchi C. J. , Suyker A. , Fischer M.
Published: April 2010

Abstract. Croplands are man-made ecosystems that have high net primary productivity during the growing season of crops, thus impacting carbon and other exchanges with the atmosphere. These exchanges play a major role in nutrient cycling and climate change related issues. An accurate representation of crop phenology and physiology is important in land-atmosphere carbon models being used to predict these exchanges. To better estimate time-varying exchanges of carbon, water, and energy of croplands using the Simple Biosphere (SiB) model, we developed crop-specific phenology models and coupled them to SiB. The coupled SiB-phenology model (SiBcrop) replaces remotely-sensed NDVI information, on which SiB originally relied for deriving Leaf Area Index (LAI) and the fraction of Photosynthetically Active Radiation (fPAR) for estimating carbon dynamics. The use of the new phenology scheme within SiB substantially improved the prediction of LAI and carbon fluxes for maize, soybean, and wheat crops, as compared with the observed data at several AmeriFlux eddy covariance flux tower sites in the US mid continent region. SiBcrop better predicted the onset and end of the growing season, harvest, interannual variability associated with crop rotation, day time carbon uptake (especially for maize) and day to day variability in carbon exchange. Biomass predicted by SiBcrop had good agreement with the observed biomass at field sites. In the future, we will predict fine resolution regional scale carbon and other exchanges by coupling SiBcrop with RAMS (the Regional Atmospheric Modeling System).
Summer drought reduces total and litter-derived soil CO2 effluxes in temperate grassland – clues from a 13C litter addition experiment
Authors: Joos O. , Hagedorn F. , Heim A. , Gilgen A. K. , Schmidt M. W. I. , Siegwolf R. T. W. , Buchmann N.
Published: April 2010

Abstract. Current climate change models predict significant changes in rainfall patterns across Europe. To explore the effect of drought on soil CO2 efflux (FSoil) and on the contribution of litter to FSoil we used rain shelters to simulate a summer drought (May to July 2007) in an intensively managed grassland in Switzerland by reducing annual precipitation by around 30% similar to the hot and dry year 2003 in Central Europe. We added 13C-depleted as well as unlabelled grass/clover litter to quantify the litter-derived CO2 efflux (FLitter). Soil CO2 efflux and the 13C/12C isotope ratio (δ13C) of the respired CO2 after litter addition were measured during the growing season 2007. Drought significantly decreased FSoil in our litter addition experiment by 59% and FLitter by 81% during the drought period itself (May to July), indicating that drought had a stronger effect on the CO2 release from litter than on the belowground-derived CO2 efflux (FBG, i.e. soil organic matter (SOM) and root respiration). Despite large bursts in respired CO2 induced by the rewetting after prolonged drought, drought also reduced FSoil and FLitter during the entire 13C measurement period (April to October) by 26% and 37%, respectively. Overall, our findings show that drought decreased FSoil and altered its seasonality and its sources. Thus, the C balance of temperate grassland soils respond sensitively to changes in precipitation, a factor that needs to be considered in regional models predicting the impact of climate change on ecosystems C balance.
Ocean acidification affects iron speciation during a coastal seawater mesocosm experiment
Authors: Breitbarth E. , Bellerby R. J. , Neill C. C. , Ardelan M. V. , Meyerhöfer M. , Zöllner E. , Croot P. L. , Riebesell U.
Published: April 2010

Abstract. Rising atmospheric CO2 is acidifying the surface ocean, a process which is expected to greatly influence the chemistry and biology of the future ocean. Following the development of iron-replete phytoplankton blooms in a coastal mesocosm experiment at 350, 700, and 1050 μatm pCO2, we observed significant increases in dissolved iron concentrations, Fe(II) concentrations, and Fe(II) half-life times during and after the peak of blooms in response to CO2 enrichment and concomitant lowering of pH, suggesting increased iron bioavailability. If applicable to the open ocean this may provide a negative feedback mechanism to the rising atmospheric CO2 by stimulating marine primary production.
The role of polysaccharides and diatom exudates in the redox cycling of Fe and the photoproduction of hydrogen peroxide in coastal seawaters
Authors: Steigenberger S. , Statham P. J. , Völker C. , Passow U.
Published: April 2010

Abstract. The effect of artificial acidic polysaccharides (PS) and exudates of Phaeodactylum tricornutum on the half-life of Fe(II) in seawater was investigated in laboratory experiments. Strong photochemical hydrogen peroxide (H2O2) production of 5.2 to 10.9 nM (mg C)−1 h−1 was found in the presence of PS and diatom exudates. Furthermore when illuminated with UV light the presence of algal exudates had a net stabilising effect on ferrous iron in seawater (initial value 100 nmol L−1) above that expected from oxidation kinetics. In the dark the PS gum xanthan showed no stabilising effect on Fe(II). The photochemical formation of superoxide (O2−) in the presence of diatom exudates and its reducing effect on Fe(III) appears to result in greater than expected concentrations of Fe(II). A model of the photochemical redox cycle of iron incorporating these processes supported the observed data well. Diatom exudates seem to have the potential to play an important role for the photochemistry of iron in coastal waters.
Hysteresis response of daytime net ecosystem exchange during drought
Authors: Pingintha N. , Leclerc M. Y. , Beasley J. P. , Durden D. , Zhang G. , Senthong C. , Rowland D.
Published: April 2010

Abstract. Continuous measurements of net ecosystem CO2 exchange (NEE) using the eddy-covariance method were made over an agricultural ecosystem in the southeastern US. During optimum environmental conditions, photosynthetically active radiation (PAR) was the primary driver controlling daytime NEE, accounting for as much as 67 to 89% of the variation in NEE. However, soil water content became the dominant factor limiting the NEE-PAR response during the peak growth stage. NEE was significantly depressed when high PAR values coincided with very low soil water content. The presence of a counter-clockwise hysteresis of daytime NEE with PAR was observed during periods of water stress. This is a result of the stomatal closure control of photosynthesis at high vapor pressure deficit and enhanced respiration at high temperature. This result is significant since this hysteresis effect limits the range of applicability of the Michaelis-Menten equation and other related expressions in the determination of daytime NEE as a function of PAR. The systematic presence of hysteresis in the response of NEE to PAR suggests that the gap-filling technique based on a non-linear regression approach should take into account the presence of water-limited field conditions. Including this step is therefore likely to improve current evaluation of ecosystem response to increased precipitation variability arising from climatic changes.
Temporal variability of carbon recycling in coastal sediments influenced by rivers: assessing the impact of flood inputs in the Rhône River prodelta
Authors: Cathalot C. , Rabouille C. , Pastor L. , Deflandre B. , Viollier E. , Buscail R. , Grémare A. , Treignier C. , Pruski A.
Published: April 2010

Abstract. River deltas are particularly important in the marine carbon cycle as they represent the transition between terrestrial and marine carbon: linked to major burial zones, they are reprocessing zones where large carbon fluxes can be mineralized. In order to estimate this mineralization, sediment oxygen uptake rates were measured in continental shelf sediments and river prodelta over different seasons near the outlet of the Rhône River in the Mediterranean Sea. On a selected set of 10 stations in the river prodelta and nearby continental shelf, in situ diffusive oxygen uptake (DOU) and laboratory total oxygen uptake (TOU) measurements were performed in early spring and summer 2007 and late spring and winter 2008. In and ex situ DOU did not show any significant differences except for shallowest organic rich stations. Sediment DOU rates show highest values concentrated close to the river mouth (approx. 20 mmol O2 m−2 d−1) and decrease offshore to values around 4.5 mmol O2 m−2 d−1 with lowest gradients in a south west direction linked to the preferential transport of the finest riverine material. Core incubation TOU showed the same spatial pattern with an averaged TOU/DOU ratio of 1.2±0.4. Temporal variations of sediment DOU over different sampling periods, spring summer and late fall, were limited and benthic mineralization rates presented a stable spatial pattern. A flood of the Rhône River occurred in June 2008 and delivered up to 30 cm of new soft muddy deposit. Immediately after this flood, sediment DOU rates close to the river mouth dropped from around 15–20 mmol O2 m−2 d−1 to values close to 10 mmol O2 m−2 d−1, in response to the deposition near the river outlet of low reactivity organic matter associated to fine material. Six months later, the oxygen distribution had relaxed back to its initial stage: the initial spatial distribution was found again underlining the active microbial degradation rates involved and the role of further deposits. These results highlight the immediate response of the sediment oxygen system to flood deposit and the rapid relaxation of this system towards its initial state (6 months or less) potentially linked to further deposits of reactive material.
Surface layer similarity in the nocturnal boundary layer: the application of Hilbert-Huang transform
Authors: Hong J. , Kim J. , Ishikawa H. , Ma Y.
Published: April 2010

Abstract. Turbulence statistics such as flux-variance relationship are critical information in measuring and modeling ecosystem exchanges of carbon, water, energy, and momentum at the biosphere-atmosphere interface. Using a recently proposed mathematical technique, the Hilbert-Huang transform (HHT), this study highlights its possibility to quantify impacts of non-turbulent flows on turbulence statistics in the stable surface layer. The HHT is suitable for the analysis of non-stationary and intermittent data and thus very useful for better understanding the interplay of the surface layer similarity with complex nocturnal environment. Our analysis showed that the HHT can successfully sift non-turbulent components and be used as a tool to estimate the relationships between turbulence statistics and atmospheric stability in complex environments such as nocturnal stable boundary layer.
Regional carbon dioxide and energy fluxes from airborne observations using flight-path segmentation based on landscape characteristics
Authors: Vellinga O. S. , Gioli B. , Elbers J. A. , Holtslag A. A. M. , Kabat P. , Hutjes R. W. A.
Published: April 2010

Abstract. This paper presents an analysis of regional fluxes obtained with a small aircraft over heterogeneous terrain in the south-west of France, during the large scale field experiment CERES'07. We use a method combining variable flight-path segmentation with basic airborne footprint analysis. The segmentation is based on topography, land use and soil type, using a.o. satellite imagery and digital maps. The segments are delineated using an average footprint length, based on all flights, and segment lengths, which are variable in space but not in time. The method results in segment averaged carbon and energy fluxes, which are shown to be representative of regional fluxes. Our analysis is focussed on carbon dioxide, heat and evaporative fluxes around solar noon. We will show that spatial and seasonal variations in the fluxes can be linked to the underlying landscape. In addition, a comparison between the airborne data and ground flux data is made to support our results. However, due to the incompleteness of ground data for some predominant vegetation types (even in such a data dense context), upscaling of ground data to regional fluxes was not possible. Without the comparison, we are still able to demonstrate that aircraft can provide direct and meaningful estimates of regional fluxes of energy and carbon dioxide.
Organic carbon efflux from a deciduous forest catchment in Korea
Authors: Kim S. J. , Kim J. , Kim K.
Published: April 2010

Abstract. Soil infiltration and surface discharge of precipitation are critical processes that affect the efflux of Dissolved Organic Carbon (DOC) and Particulate Organic Carbon (POC) in forested catchments. Concentrations of DOC and POC can be very high in the soil surface in most forest ecosystems and their efflux may not be negligible particularly under the monsoon climate. In East Asia, however, there are little data available to evaluate the role of such processes in forest carbon budget. In this paper, we address two basic questions: (1) how does stream discharge respond to storm events in a forest catchment? and (2) how much DOC and POC are exported from the catchment particularly during the summer monsoon period? To answer these questions, we collected hydrological data (e.g., precipitation, soil moisture, runoff discharge, groundwater level) and conducted hydrochemical analyses (including DOC, POC, and six tracers) in a deciduous forest catchment in Gwangneung National Arboretum in west-central Korea. Based on the end-member mixing analysis of the six storm events during the summer monsoon in 2005, the surface discharge was estimated as 30 to 80% of the total runoff discharge. The stream discharge responded to precipitation within 12 h during these storm events. The annual efflux of DOC and POC from the catchment was estimated as 0.04 and 0.05 t C ha−1 yr−1, respectively. Approximately 70% of the annual organic carbon efflux occurred during the summer monsoon period. Overall, the annual efflux of organic carbon was estimated to be about 10% of the Net Ecosystem carbon Exchange (NEE) obtained by eddy covariance measurement at the same site. Considering the current trends of increasing intensity and amount of summer rainfall and the large interannual variability in NEE, ignoring the organic carbon efflux from forest catchments would result in an inaccurate estimation of the carbon sink strength of forest ecosystems in the monsoon East Asia.
Calibration of δ18O of cultured benthic foraminiferal calcite as a function of temperature
Authors: Barras C. , Duplessy J.-C. , Geslin E. , Michel E. , Jorissen F. J.
Published: April 2010

Abstract. The geochemical composition of deep-sea benthic foraminiferal calcite is widely used to reconstruct sea floor paleoenvironments. The calibration of the applied proxy methods has until now been based on field observations in complex natural ecosystems where multiple factors are interfering. However, laboratory experiments with stable physico-chemical conditions appear to be the ideal way to evaluate the influence of a single parameter. In this paper, we present the oxygen isotopic composition of deep-sea benthic foraminiferal shells entirely calcified under controlled experimental conditions over a large temperature range (4 to 19 °C). The new laboratory protocols developed for this study allowed us to produce large quantities of shells in stable conditions, so that also the shell size effect could be investigated. It appears that when considering a narrow test size range, the curve describing the temperature dependency of δ18O in Bulimina marginata is parallel to the thermodynamically determined curve observed in inorganically precipitated calcite (−0.22‰ °C−1). This observation validates the use of δ18O of this benthic species in paleoceanographical studies. Over the studied size range (50 to 300 μm), the effect of test size was 0.0014‰ μm−1, confirming previous suggestions of a substantial test size effect on δ18O of benthic foraminifera. This study opens new perspectives for future proxy calibrations in laboratory set-ups with deep-sea benthic foraminifera (e.g. quantification of the influence of the carbonate chemistry).
Optical Characterization of an Eddy-induced Diatom Bloom West of the Island of Hawaii
Authors: Nencioli F. , Chang G. , Twardowski M. , Dickey T. D.
Published: April 2010

Abstract. Optical properties were collected along a transect across cyclonic eddy Opal in the lee of Hawaii during the E-Flux III field experiment (10–27 March 2005). The eddy was characterized by an intense doming of isopycnal surfaces, and by an enhanced Deep Chlorophyll Maximum Layer (DCML) within its core. The phytoplankton bloom was diatom dominated, evidencing an eddy-induced shift in ecological community. Four distinct regions were identified throughout the water column at Opal's core: a surface mixed layer dominated by small phytoplankton; a layer dominated by "senescent" diatoms between the bottom of the upper mixed layer and the DCML; the DCML; and a deep layer characterized by decreasing phytoplankton activity. We focused on two parameters, the ratio of chlorophyll concentration to particulate beam attenuation coefficient, [chl]/cp, and the backscattering ratio (the particle backscattering to particle scattering ratio), b~bp, and tested their sensitivity to the changes in particle composition observed through the water column at the eddy center. Our results show that [chl]/cp is not a good indicator. Despite the shift in ecological community, the ratio remains controlled primarily by the variation in chlorophyll concentration per cell with depth (photoadaptation), so that its values increase throughout the DCML. Steeper increase of [chl]/cp below the DCML suggest that remineralization might be another important controlling factor. On the other hand, b~bp clearly indicates a shift from a small phytoplankton to a diatom dominated community. Below an upper layer characterized by constant values, the b~bp showed a rapid decrease to a broad minimum within the DCML. The higher values below the DCML are consistent with enhanced remineralization below the eddy-induced bloom. Both the "senescent" and the "healthy" diatom layers are characterized by similar optical properties, indicating some possible limitations in using optical measurements to fully characterize the composition of suspended material in the water column. The inverse relationship between b~bp, reported by others for Case II waters, is observed neither for the background conditions, nor in the presence of the eddy-induced diatom bloom. Between the two parameters, only the backscattering ratio showed the potential to be a successful indicator for changes in particle composition in Case I waters.
Autumn temperature and carbon balance of a boreal Scots pine forest in Southern Finland
Authors: Vesala T. , Launiainen S. , Kolari P. , Pumpanen J. , Sevanto S. , Hari P. , Nikinmaa E. , Kaski P. , Mannila H. , Ukkonen E. , Piao S. L. , Ciais P.
Published: April 2010

Abstract. We analyzed the dynamics of carbon balance components: gross primary production (GPP) and total ecosystem respiration (TER), of a boreal Scots pine forest in Southern Finland. The main focus is on investigations of environmental drivers of GPP and TER and how they affect the inter-annual variation in the carbon balance in autumn (September–December). We used standard climate data and CO2 exchange measurements collected by the eddy covariance (EC) technique over 11 years. EC data revealed that increasing autumn temperature significantly enhances TER: the temperature sensitivity was 9.5 gC m−2 °C−1 for the period September–October (early autumn when high radiation levels still occur) and 3.8 gC m−2 °C−1 for November–December (late autumn with suppressed radiation level). The cumulative GPP was practically independent of the temperature in early autumn. In late autumn, air temperature could explain part of the variation in GPP but the temperature sensitivity was very weak, less than 1 gC m−2 °C−1. Two models, a stand photosynthesis model (COCA) and a global vegetation model (ORCHIDEE), were used for estimating stand GPP and its sensitivity to the temperature. The ORCHIDEE model was tested against the observations of GPP derived from EC data. The stand photosynthesis model COCA predicted that under a predescribed 3–6 °C temperature increase, the temperature sensitivity of 4–5 gC m−2 °C−1 in GPP may appear in early autumn. The analysis by the ORCHIDEE model revealed the model sensitivity to the temporal treatment of meteorological forcing. The model predictions were similar to observed ones when the site level 1/2-hourly time step was applied, but the results calculated by using daily meteorological forcing, interpolated to 1/2-hourly time step, were biased. This is due to the nonlinear relationship between the processes and the environmental factors.
Short-term response of the coccolithophore Emiliania huxleyi to an abrupt change in seawater carbon dioxide concentrations
Authors: Barcelos e Ramos J. , Müller M. N. , Riebesell U.
Published: April 2010

Abstract. The response of the coccolithophore Emiliania huxleyi to rising CO2 concentrations is well documented for acclimated cultures where cells are exposed to the CO2 treatments for several generations prior to the experiment. The exact number of generations required for acclimation to CO2-induced changes in seawater carbonate chemistry, however, is unknown. Here we show that Emiliania huxleyi's short-term response (26 h) after cultures (grown at 500 μatm) were abruptly exposed to changed CO2 concentrations (~190, 410, 800 and 1500 μatm) is similar to that obtained with acclimated cultures under comparable conditions in earlier studies. Most importantly, from the lower CO2 levels (190 and 410 μatm) to 750 and 1500 μatm calcification decreased and organic carbon fixation increased within the first 8 to 14 h after exposing the cultures to changes in carbonate chemistry. This suggests that Emiliania huxleyi rapidly alters the rates of essential metabolical processes in response to changes in seawater carbonate chemistry, establishing a new physiological "state" (acclimation) within a matter of hours. If this relatively rapid response applies to other phytoplankton species, it may simplify interpretation of studies with natural communities (e.g. mesocosm studies and ship-board incubations), where often it is not feasible to allow for a pre-conditioning phase before starting experimental incubations.
Regional and seasonal patterns of litterfall in tropical South America
Authors: Chave J. , Navarrete D. , Almeida S. , Álvarez E. , Aragão L. E. O. C. , Bonal D. , Châtelet P. , Silva-Espejo J. E. , Goret J.-Y. , von Hildebrand P. , Jiménez E. , Patiño S. , Peñuela M. C. , Phillips O. L. , Stevenson P. , Malhi Y.
Published: April 2010

Abstract. The production of aboveground soft tissue represents an important share of total net primary production in tropical rain forests. Here we draw from a large number of published and unpublished datasets (n=81 sites) to assess the determinants of litterfall variation across South American tropical forests. We show that across old-growth tropical rainforests, litterfall averages 8.61±1.91 Mg ha−1 yr−1 (mean ± standard deviation, in dry mass units). Secondary forests have a lower annual litterfall than old-growth tropical forests with a mean of 8.01±3.41 Mg ha−1 yr−1. Annual litterfall shows no significant variation with total annual rainfall, either globally or within forest types. It does not vary consistently with soil type, except in the poorest soils (white sand soils), where litterfall is significantly lower than in other soil types (5.42±1.91 Mg ha−1 yr−1). We also study the determinants of litterfall seasonality, and find that it does not depend on annual rainfall or on soil type. However, litterfall seasonality is significantly positively correlated with rainfall seasonality. Finally, we assess how much carbon is stored in reproductive organs relative to photosynthetic organs. Mean leaf fall is 5.74±1.83 Mg ha−1 yr−1 (71% of total litterfall). Mean allocation into reproductive organs is 0.69±0.40 Mg ha−1 yr−1 (9% of total litterfall). The investment into reproductive organs divided by leaf litterfall increases with soil fertility, suggesting that on poor soils, the allocation to photosynthetic organs is prioritized over that to reproduction. Finally, we discuss the ecological and biogeochemical implications of these results.
An iron budget during the natural iron fertilisation experiment KEOPS (Kerguelen Islands, Southern Ocean)
Authors: Chever F. , Sarthou G. , Bucciarelli E. , Blain S. , Bowie A. R.
Published: April 2010

Abstract. Total dissolvable iron (TDFe) was measured in the water column above and in the surrounding of the Kerguelen Plateau (Indian sector of the Southern Ocean) during the KErguelen Ocean Plateau compared Study (KEOPS) cruise. TDFe concentrations ranged from 0.90 to 65.6 nmol L−1 above the plateau and from 0.34 to 2.23 nmol L−1 offshore of the plateau. Station C1 located south of the plateau, near Heard Island, exhibited very high values (329–770 nmol L−1). Apparent particulate iron (Feapp), calculated as the difference between the TDFe and the dissolved iron measured on board (DFe) represented 95±5% of the TDFe above the plateau, suggesting that particles and refractory colloids largely dominated the iron pool. This paper presents a budget of DFe and Feapp above the plateau. Lateral advection of water that had been in contact with the continental shelf of Heard Island seems to be the predominant source of Feapp and DFe above the plateau, with a supply of 9.7±3.6×106 and 8.3±11.6×103 mol d−1, respectively. The residence times of 1.7 and 48 days estimated for Feapp and DFe respectively, indicate a rapid turnover in the surface water. A comparison between Feapp and total particulate iron (TPFe) suggests that the total dissolved fraction is mainly constituted of small refractory colloids. This fraction does not seem to be a potential source of iron to the phytoplankton in our study. Finally, when taking into account the lateral supply of dissolved iron, the seasonal carbon sequestration efficiency was estimated at 154 000 mol C (mol Fe)−1, which is 4-fold lower than the previously estimated value in this area but still 18-fold higher than the one estimated during the other study of a natural iron fertilisation experiment, CROZEX.
Numerical study of surface energy partitioning on the Tibetan plateau: comparative analysis of two biosphere models
Authors: Hong J. , Kim J.
Published: April 2010

Abstract. The Tibetan Plateau is a critical region in the research of biosphere-atmosphere interactions on both regional and global scales due to its relation to Asian summer monsoon and El Niño. The unique environment on the Plateau provides valuable information for the evaluation of the models' surface energy partitioning associated with the summer monsoon. In this study, we investigated the surface energy partitioning on this important area through comparative analysis of two biosphere models constrained by the in-situ observation data. Indeed, the characteristics of the Plateau provide a unique opportunity to clarify the structural deficiencies of biosphere models as well as new insight into the surface energy partitioning on the Plateau. Our analysis showed that the observed inconsistency between the two biosphere models was mainly related to: 1) the parameterization for soil evaporation; 2) the way to deal with roughness lengths of momentum and scalars; and 3) the parameterization of subgrid velocity scale for aerodynamic conductance. Our study demonstrates that one should carefully interpret the modeling results on the Plateau especially during the pre-monsoon period.