bluuebunny/crossref_metadata_2025 huggingface dataset:
The Best of All Worlds: Streptococcus pneumoniae Conjunctivitis through the Lens of Community Ecology and Microbial Biogeography
Authors: Ung Lawson , Bispo Paulo J. M. , Bryan Noelle C. , Andre Camille , Chodosh James , Gilmore Michael S.
Published: December 2019

The study of the forces which govern the geographical distributions of life is known as biogeography, a subject which has fascinated zoologists, botanists and ecologists for centuries. Advances in our understanding of community ecology and biogeography—supported by rapid improvements in next generation sequencing technology—have now made it possible to identify and explain where and why life exists as it does, including within the microbial world. In this review, we highlight how a unified model of microbial biogeography, one which incorporates the classic ecological principles of selection, diversification, dispersion and ecological drift, can be used to explain community dynamics in the settings of both health and disease. These concepts operate on a multiplicity of temporal and spatial scales, and together form a powerful lens through which to study microbial population structures even at the finest anatomical resolutions. When applied specifically to curious strains of conjunctivitis-causing, nonencapsulated Streptococcus pneumoniae, we show how this conceptual framework can be used to explain the possible evolutionary and disease-causing mechanisms which allowed these lineages to colonize and invade a separate biogeography. An intimate knowledge of this radical bifurcation in phylogeny, still the only known niche subspecialization for S. pneumoniae to date, is critical to understanding the pathogenesis of ocular surface infections, nature of host-pathogen interactions, and developing strategies to curb disease transmission.
Serological Testing for Mycobacterial Heat Shock Protein Hsp65 Antibody in Health and Diseases
Authors: Zhang Peilin , Minardi Lawrence M. , Kuenstner John Todd , Zhang Sylvia T. , Zekan Steve M. , Kruzelock Rusty
Published: December 2019

Mycobacterial heat shock protein 65 gene (Hsp65) has been widely used for classification of Mycobacterial species, and detection of Mycobacterial genes by molecular methods and has proven useful in identification of Mycobacterial infection in various clinical conditions. Circulating antibody against Mycobacterial hsp65 has been found in many clinical diseases including autoimmune diseases (Crohn’s disease, lupus erythematosus, multiple sclerosis, diabetes, etc.), atherosclerosis and cancers. The prevalence of anti-Hsp65 antibody in the normal healthy population is unknown. We determined the blood levels of antibody against Mycobacterial hsp65 in the normal population represented by 288 blood donors of the American Red Cross and tested the blood of 109 patients with Crohn’s disease and 28 patients with Sjogren’s syndrome for comparison. The seroprevalence of anti-Hsp65 IgG in the normal population of Red Cross donors was 2.8% (8 of 288 positive). The Hsp65 antibody levels were significantly elevated in patients with Crohn’s disease and Sjogren’s syndrome. The prevalence of Hsp65 antibody in Crohn’s disease patients was 67.9% (74 of 109 patients), and 85.7% for Sjogren’s patients (24 of 28 patients). Our data indicate that anti-Hsp65 antibody is rare in the normal population, but frequent in chronic diseases. The presence of circulating Hsp65 antibody reflects an abnormal immune (adaptive) response to Mycobacterial exposure in patients with chronic diseases, thus differentiating the patients with chronic diseases from those clinical mimics.
Cooperative Role of MAPK Pathways in the Interaction of Candida albicans with the Host Epithelium
Authors: Correia Inês , Prieto Daniel , Román Elvira , Wilson Duncan , Hube Bernhard , Alonso-Monge Rebeca , Pla Jesús
Published: December 2019

Candida albicans is an important human fungal pathogen responsible for tens of millions of infections as well as hundreds of thousands of severe life-threatening infections each year. MAP kinase (MAPK) signal transduction pathways facilitate the sensing and adaptation to external stimuli and control the expression of key virulence factors such as the yeast-to-hypha transition, the biogenesis of the cell wall, and the interaction with the host. In the present study, we have combined molecular approaches and infection biology to analyse the role of C. albicans MAPK pathways during an epithelial invasion. Hog1 was found to be important for adhesion to abiotic surfaces but was dispensable for damage to epithelial cells. The Mkc1 cell wall integrity (CWI) and Cek1 pathways, on the other hand, were both required for oral epithelial damage. Analysis of the ability to penetrate nutrient-rich semi-solid media revealed a cooperative role for Cek1 and Mkc1 in this process. Finally, cek2Δ (as well as cek1Δ) but not mkc1Δ or hog1Δ mutants, exhibited elevated β-glucan unmasking as revealed by immunofluorescence studies. Therefore, the four MAPK pathways play distinct roles in adhesion, epithelial damage, invasion and cell wall remodelling that may contribute to the pathogenicity of C. albicans.
Lactobacillus acidophilus JCM 1132 Strain and Its Mutant with Different Bacteriocin-Producing Behaviour Have Various In Situ Effects on the Gut Microbiota of Healthy Mice
Authors: Wang Gang , Yu Yunxia , Garcia-Gutierrez Enriqueta , Jin Xing , He Yufeng , Wang Linlin , Tian Peijun , Liu Zhenmin , Zhao Jianxin , Zhang Hao , Chen Wei
Published: December 2019

The production of bacteriocin is considered to be a probiotic trait of lactic acid bacteria (LAB). However, not all strains of LAB harbour bacteriocin genes, even within the same species. Moreover, the effects of bacteriocins on the host gut microbiota and on host physiological indicators are rarely studied. This study evaluated the effects of the bacteriocin-producing Lactobacillus acidophilus strain JCM1132 and its non-producing spontaneous mutant, L. acidophilus CCFM720, on the physiological statuses and gut microbiota of healthy mice. Mice that received the bacteriocin-producing strain JCM1132 exhibited reduced water and food intake. Furthermore, the administration of these strains induced significant changes in the compositional abundance of faecal microbiota at the phylum and genus levels, and some of these changes were more pronounced after one week of withdrawal. The effects of CCFM720 treatment on the gut microbiota seemed to favour the prevention of metabolic diseases to some extent. However, individuals that received JCM1132 treatment exhibited weaker inflammatory responses than those that received CCFM720 treatment. Our results indicate that treatment with bacteriocin-producing or non-producing strains can have different effects on the host. Accordingly, this trait should be considered in the applications of LAB.
Enrichment and Analysis of Stable 1,4-dioxane-Degrading Microbial Consortia Consisting of Novel Dioxane-Degraders
Authors: Tusher Tanmoy Roy , Shimizu Takuya , Inoue Chihiro , Chien Mei-Fang
Published: December 2019

Biodegradation of 1,4-dioxane, a water contaminant of emerging concern, has drawn substantial attention over the last two decades. A number of dioxane-degraders have been identified, though many of them are unable to metabolically utilize 1,4-dioxane. Moreover, it is considered more preferable to use microbial consortia rather than the pure strains, especially in conventional bioreactors for industrial wastewater treatment. In the present study, a stable 1,4-dioxane-degrading microbial consortium was enriched, namely 112, from industrial wastewater by nitrate mineral salt medium (NMSM). The consortium 112 is capable of utilizing 1,4-dioxane as a sole carbon and energy source, and can completely degrade 1,4-dioxane up to 100 mg/L. From the consortium 112, two 1,4-dioxane-degrading bacterial strains were isolated and identified, in which the Variovorax sp. TS13 was found to be a novel 1,4-dioxane-degrader that can utilize 100 mg/L of 1,4-dioxane. The efficacy of the consortium 112 was increased significantly when we cultured the consortium with mineral salt medium (MSM). The new consortium, N112, could utilize 1,4-dioxane at a rate of 1.67 mg/L·h. The results of the ribosomal RNA intergenic spacer analysis (RISA) depicted that changes in the microbial community structure of consortium 112 was the reason behind the improved degradation efficiency of consortium N112, which was exhibited as a stable and effective microbial consortium with a high potential for bioremediation of the dioxane-impacted sites and contaminated industrial wastewater.
The Recovery of Valuable Metals from Ocean Polymetallic Nodules Using Solid-State Metalized Reduction Technology
Authors: Zhao Feng , Jiang Xunxiong , Wang Shengdong , Feng Linyong , Li Da
Published: December 2019

Ocean polymetallic nodules are oxide ores rich in Ni, Co, Cu, and Mn, which are valuable metals found in deep-sea mineral resources. Such non-ferrous metals do not exist in isolation, and producing concentrates using conventional mineral separation techniques is challenging without pre-treatment. We propose an effective, environmentally-friendly recovery technology combined with solid-state metalized reduction treatment and magnetic separation to recycle these metals from ocean polymetallic nodules. We conducted single-factor tests to investigate the effects of additives, anthracite dosage, duration, and reduction temperature on metal recovery and to obtain optimal operating parameters. We found that valuable metals in ocean polymetallic nodules may be selectively reduced to a metallic state. Only a fraction of Mn was reduced to metal. The reduced metals were recovered to concentrates using magnetic separation. More than 80% of these metals were concentrated to magnetic concentrates with mass ratios of 10–15%. The recovery rates of Ni, Co, Cu, Mn, and Fe in concentrates were optimum at 86.48%, 86.74%, 83.91%, 5.63%, and 91.46%, respectively, when using CaF2 4%, anthracite 7%, SiO2 dosage 5%, and FeS 6% at 1100 °C for 2.5 h. This approach to non-ferrous metal extraction using conventional hydrometallurgical processes could be a step toward practical industrial-scale techniques for the recovery of metals from polymetallic nodules.
Editorial for Special Issue “Towards a Sustainable Management of Mine Wastes: Reprocessing, Reuse, Revalorization, and Repository”
Authors: Taha Yassine , Benzaazoua Mostafa
Published: December 2019

The mining industry continues to face many challenges due to its potential environmental impacts [...]
Association of mRNA Levels of IL6, MMP-8, GSS in Saliva and Pyelonephritis in Children
Authors: Angelova Sirma , Salim Ayshe , Kiselova-Kaneva Yoana , Ivanova Diana , Peev Stefan
Published: December 2019

Nowadays, saliva is a subject of growing scientific interest because of its definite advantages as diagnostic medium. The aim of our study was to investigate the diagnostic potential and reliability of messenger RNAs (mRNAs) of selected genes—interleukin-6 (IL-6), matrix metalloproteinase-8 (MMP-8) and glutathione synthetase (GSS)—as salivary markers in children with diagnosed pyelonephritis and to correlate their levels with typical urine para-clinical indicators of the disease. Analysis of the mRNA levels for IL-6, MMP-8 and GSS in 28 children hospitalized with the diagnosis of pyelonephritis was conducted applying the method of quantitative reverse transcription polymerase chain reaction (RT-qPCR). In the study group (n = 28), IL-6 mRNA levels demonstrated 64-fold increase (p < 0.001). MMP-8 and GSS mRNA levels were increased in 12 samples in patients with pyelonephritis 3.27 (p < 0.01) and 1.94 (p < 0.001) times, respectively. We found a strong and significant correlation (p < 0.001) between the investigated mRNA for IL-6 and MMP-8, IL-6 and GSS, MMP-8 and GSS. Moderate degree of correlation was established between IL-6 and the typical para-clinical indicator of leucocytes (0.43, p < 0.05) and between GSS and leucocytes (0.54, p < 0.01). Salivary IL-6, MMP-8 and GSS mRNA levels in combination with urine test analysis could be useful diagnostic tool for the very distributed disorder of pyelonephritis in childhood.
Ketoprofen-Based Ionic Liquids: Synthesis and Interactions with Bovine Serum Albumin
Authors: Ossowicz Paula , Kardaleva Proletina , Guncheva Maya , Klebeko Joanna , Świątek Ewelina , Janus Ewa , Yancheva Denitsa , Angelov Ivan
Published: December 2019

The development of ionic liquids based on active pharmaceutical ingredients (API-ILs) is a possible solution to some of the problems of solid and/or hydrophobic drugs such as low solubility and bioavailability, polymorphism and an alternative route of administration could be suggested as compared to the classical drug. Here, we report for the first time the synthesis and detailed characterization of a series of ILs containing a cation amino acid esters and anion ketoprofen (KETO-ILs). The affinity and the binding mode of the KETO-ILs to bovine serum albumin (BSA) were assessed using fluorescence spectroscopy. All compounds bind in a distance not longer than 6.14 nm to the BSA fluorophores. The estimated binding constants (KA) are in order of 105 L mol−1, which is indicative of strong drug or IL-BSA interactions. With respect to the ketoprofen-BSA system, a stronger affinity of the ILs containing l-LeuOEt, l-ValOBu, and l-ValOEt cation towards BSA is clearly seen. Fourier transformed infrared spectroscopy experiments have shown that all studied compounds induced a rearrangement of the protein molecule upon binding, which is consistent with the suggested static mechanism of BSA fluorescence quenching and formation of complexes between BSA and the drugs. All tested compounds were safe for macrophages.
The Significance of Halogen Bonding in Ligand–Receptor Interactions: The Lesson Learned from Molecular Dynamic Simulations of the D4 Receptor
Authors: Kurczab Rafał , Kucwaj-Brysz Katarzyna , Śliwa Paweł
Published: December 2019

Recently, a computational approach combining a structure–activity relationship library containing pairs of halogenated ligands and their corresponding unsubstituted ligands (called XSAR) with QM-based molecular docking and binding free energy calculations was developed and used to search for amino acids frequently targeted by halogen bonding, also known as XB hot spots. However, the analysis of ligand–receptor complexes with halogen bonds obtained by molecular docking provides a limited ability to study the role and significance of halogen bonding in biological systems. Thus, a set of molecular dynamics simulations for the dopamine D4 receptor, recently crystallized with the antipsychotic drug nemonapride (5WIU), and the five XSAR sets were performed to verify the identified hot spots for halogen bonding, in other words, primary (V5x40), and secondary (S5x43, S5x461 and H6x55). The simulations confirmed the key role of halogen bonding with V5x40 and H6x55 and supported S5x43 and S5x461. The results showed that steric restrictions and the topology of the molecular core have a crucial impact on the stabilization of the ligand–receptor complex by halogen bonding.
Microwave Hydrodiffusion and Gravity (MHG) Extraction from Different Raw Materials with Cosmetic Applications
Authors: López-Hortas Lucía , Falqué Elena , Domínguez Herminia , Torres María Dolores
Published: December 2019

Microwave hydrodiffusion and gravity (MHG) and ethanolic solid-liquid extraction were compared using selected plant sources. Their bioactive profile, color features, and proximate chemical characterization were determined. MHG extracts, commercial antioxidants, and three distinct types of thermal spring water were used in a sunscreen cream formulation. Their bioactive capacity, chemical and rheological properties were evaluated. MHG Cytisus scoparius flower extract provided the highest bioactive properties. Pleurotus ostreatus MHG liquor exhibited the highest total solid extraction yield. The Brassica rapa MHG sample stood out for its total protein content and its monosaccharide and oligosaccharide concentration. Quercus robur acorns divided into quarters supplied MHG extract with the lowest energy requirements, highest DPPH inhibition percentage, total lipid content and the highest enzyme inhibition. The chemical and bioactive capacities stability of the sunscreen creams elaborated with the selected MHG extracts and the thermal spring waters showed a similar behavior than the samples containing commercial antioxidants.
The Effect of (1S,2R-((3-bromophenethyl)amino)-N-(4-chloro-2-trifluoromethylphenyl) cyclohexane-1-sulfonamide) on Botrytis cinerea through the Membrane Damage Mechanism
Authors: Peng Jingnan , Wang Kai , Feng Tingyue , Zhang Huazhong , Li Xinghai , Qi Zhiqiu
Published: December 2019

In recent years, Botrytis cinerea has led to serious yield losses because of its resistance to fungicides. Many sulfonamides with improved properties have been used. (1S,2R-((3-bromophenethyl)amino)-N-(4-chloro-2-trifluoromethylphenyl)cyclohexane-1-sulfonamide) (abbreviation: SYAUP-CN-26) is a new sulfonamide compound that has excellent activity against B. cinerea. This study investigated the effect of SYAUP-CN-26 on electric conductivity, nucleic acids leakage, malondialdehyde (MDA) content, and reducing sugars and membrane structure reduction of B. cinerea. The results showed that the cell membrane permeability of B. cinerea increased with increasing concentrations of SYAUP-CN-26; meanwhile, the sugar content decreased, the malondialdehyde content increased, and relative electric conductivity and nucleic acid substance leakage were observed in the cell after exposure to 19.263 mg/L SYAUP-CN-26 for 24 h. After 48 h of exposure to 1.823 mg/L and 19.263 mg/L SYAUP-CN-26, the cell membranes of B. cinerea mycelia were observed to be damaged under propidium iodide (PI) and transmission electron microscopy (TEM) observations. It is assumed that SYAUP-CN-26 was responsible for the damage of cell membrane. Overall, the results indicate that SYAUP-CN-26 could inhibit the growth of B. cinerea cells by damaging the cell membranes.
Effect of Domain Size, Boundary, and Loading Conditions on Mechanical Properties of Amorphous Silica: A Reactive Molecular Dynamics Study
Authors: Vo Truong , Reeder Brett , Damone Angelo , Newell Pania
Published: December 2019

Mechanical properties are very important when choosing a material for a specific application. They help to determine the range of usefulness of a material, establish the service life, and classify and identify materials. The size effect on mechanical properties has been well established numerically and experimentally. However, the role of the size effect combined with boundary and loading conditions on mechanical properties remains unknown. In this paper, by using molecular dynamics (MD) simulations with the state-of-the-art ReaxFF force field, we study mechanical properties of amorphous silica (e.g., Young’s modulus, Poisson’s ratio) as a function of domain size, full-/semi-periodic boundary condition, and tensile/compressive loading. We found that the domain-size effect on Young’s modulus and Poisson’s ratio is much more significant in semi-periodic domains compared to full-periodic domains. The results, for the first time, revealed the bimodular and anisotropic nature of amorphous silica at the atomic level. We also defined a “safe zone” regarding the domain size, where the bulk properties of amorphous silica can be reproducible, while the computational cost and accuracy are in balance.
Optimization of Process Parameters for a Chemi-Absorbed Graphene Coating and Its Nano Tribological Investigation
Authors: Li Pengfei , Li Yuncheng , Chen Hongyue , Liu Hui , Cheng Xianhua
Published: December 2019

A reduced graphene oxide coating was deposited on a titanium substrate for potential anti-friction applications in nano- or micro-mechanical systems. A γ-aminopropyltriethoxysilane coating was self-assembled on the substrate as an adhesive interlayer beforehand. The process parameters of self-assembly and hydrothermal reduction of graphene oxide coating were explored via water contact angle and tribological tests. Insufficient self-assembly duration of graphene oxide layer can be detected by water contact angle results, and the corresponding coating displayed a higher coefficient of friction and shorter anti-wear lifetime than the optimized one. Proper hydrothermal temperature and duration were also confirmed by its water contact angle, coefficient of friction and anti-wear lifetime. Noticeably, excessive hydrothermal temperature or duration would reduce the coefficient of friction, but diminish the anti-wear resistance. The optimized process parameters were confirmed as assembly duration of graphene oxide coating for 12 h, hydrothermal reduction duration of 6–8 h at 135 °C. Nano tribological behaviors of the obtained hydrothermal reduced graphene oxide coating by AFM tester were then investigated under various testing circumstances. The results showed that the coating performed reliable and low adhesion and friction forces under all circumstances. The nanowear resistance of the titanium substrate was significantly strengthened by the prepared coating.
Polyphenolic Extract from Sambucus ebulus L. Leaves Free and Loaded into Lipid Vesicles
Authors: Păvăloiu Ramona-Daniela , Sha’at Fawzia , Bubueanu Corina , Deaconu Mihaela , Neagu Georgeta , Sha’at Mousa , Anastasescu Mihai , Mihailescu Mona , Matei Cristian , Nechifor Gheorghe , Berger Daniela
Published: December 2019

The paper deals with the preparation and characterisation of hydroalcoholic polyphenolic extract from Sambucus ebulus (SE) leaves that was further loaded into three-types of lipid vesicles: liposomes, transfersomes, and ethosomes, to improve its bioavailability and achieve an optimum pharmacological effect. For Sambucus ebulus L.-loaded lipid vesicles, the entrapment efficiency, particle size, polydispersity index and stability were determined. All prepared lipid vesicles showed a good entrapment efficiency, in the range of 75–85%, nanometric size, low polydispersity indexes, and good stability over three months at 4 °C. The in vitro polyphenols released from lipid vehicles demonstrated slower kinetics when compared to the free extract dissolution in phosphate buffer solution at pH 7.4. Either free SE extract or SE extract loaded into lipid vesicles demonstrated a cytoprotective effect, even at low concentration, 5 ug/mL, against hydrogen peroxide-induced toxicity on L-929 mouse fibroblasts’ cell lines. However, the cytoprotective effect depended on the time of the cells pre-treatment with SE extract before exposure to a hydrogen peroxide solution of 50 mM concentration, requiring at least 12 h of pre-treatment with polyphenols with radical scavenging capacity.
Preparation of Hollow Flower-Like Microspherical β-Bi2O3/BiOCl Heterojunction and High Photocatalytic Property for Tetracycline Hydrochloride Degradation
Authors: Kong Shulin , An Zhaohui , Zhang Wenwen , An Zhihao , Yuan Ming , Chen Donghui
Published: December 2019

Tetracycline cannot be effectively degraded in wastewater treatment. Therefore, the development of excellent photocatalysts is of significant importance for environmental protection. In this study, a β-Bi2O3/BiOCl heterojunction photocatalyst with hollow flower-like microspheres was successfully synthesized by the in-situ reaction of HCl and β-Bi2O3 hollow spheres. The prepared samples are characterized by Scanning electron microscopy, Transmission electron microscopy, X-ray diffraction, X-ray photoelectron spectroscopy, N2 physical adsorption, UV-vis diffuse reflectance spectroscopy, and Photoluminescence. Then, research on the photocatalytic performance for the degradation of tetracycline hydrochloride was conducted. The results show that the photocatalytic performance of the β-Bi2O3/BiOCl composite is significantly better than the β-Bi2O3 and BiOCl. The increase in photocatalytic activity is due to the formation of a heterojunction between β-Bi2O3 and BiOCl, which effectively promotes the separation of photogenerated electron-hole pairs. Additionally, the heterojunction nanocomposite demonstrated the outstanding photocatalytic stability after five cycles, which indicates that the material can be used for water environment purification. This paper provides assistance for studying the photocatalytic mechanism of heterojunction photocatalytic materials.
Identification of Genomic Loci Responsible for the Formation of Nuclear Domains Using Lampbrush Chromosomes
Authors: Krasikova Alla , Kulikova Tatiana
Published: December 2019

In the cell nuclei, various types of nuclear domains assemble as a result of transcriptional activity at specific chromosomal loci. Giant transcriptionally active lampbrush chromosomes, which form in oocyte nuclei of amphibians and birds enable the mapping of genomic sequences with high resolution and the visualization of individual transcription units. This makes avian and amphibian oocyte nuclei an advantageous model for studying locus-specific nuclear domains. We developed two strategies for identification and comprehensive analysis of the genomic loci involved in nuclear domain formation on lampbrush chromosomes. The first approach was based on the sequential FISH-mapping of BAC clones containing genomic DNA fragments with a known chromosomal position close to the locus of a nuclear domain. The second approach involved mechanical microdissection of the chromosomal region adjacent to the nuclear domain followed by the generation of FISH-probes and DNA sequencing. Furthermore, deciphering the DNA sequences from the dissected material by high throughput sequencing technologies and their mapping to the reference genome helps to identify the genomic region responsible for the formation of the nuclear domain. For those nuclear domains structured by nascent transcripts, identification of genomic loci of their formation is a crucial step in the identification of scaffold RNAs.
Estrogenic, Antiestrogenic and Antiproliferative Activities of Euphorbia bicolor (Euphorbiaceae) Latex Extracts and Its Phytochemicals
Authors: Basu Paramita , Meza Elizabeth , Bergel Michael , Maier Camelia
Published: December 2019

Estrogen receptor antagonists are effective in breast cancer treatment. However, the side effects of these treatments have led to a rise in searching for alternative therapies. The present study evaluated the estrogenic, antiestrogenic, and antiproliferative activities of Euphorbia bicolor (Euphorbiaceae), a plant native to south-central USA. Estrogenic and antiestrogenic activities of latex extract and its phytochemicals were evaluated with a steroid-regulated yeast system expressing the human estrogen receptor α and antiproliferative properties were assessed in the ER-positive MCF-7 and T47-D and triple-negative MDA-MB-231 and MDA-MB-469 breast carcinomas. Genistein and coumestrol identified in the latex extract induced higher estrogenic and antiestrogenic activities compared to diterpenes and flavonoids. The latex extract, resiniferatoxin (RTX) and rutin induced antiproliferative activities in all cell lines in a dose-dependent manner, but not in human normal primary dermal fibroblast cultures. A biphasic effect was observed with MDA-MB-468 breast carcinoma in which the latex extract at low concentrations increased and at high concentrations decreased cell proliferation. Treatments with latex extract in combination with RTX or rutin reduced even more the proliferation of MCF-7 breast carcinoma compared to the individual latex, RTX, and rutin treatments. E. bicolor latex phytochemicals could contribute to developing commercial therapeutic agents for breast cancer treatment.
Gluten Deprivation: What Nutritional Changes Are Found During the First Year in Newly Diagnosed Coeliac Children?
Authors: Forchielli Maria Luisa , Diani Lucia , Labriola Flavio , Bolasco Giulia , Rocca Alessandro , Salfi Nunzio Cosimo , Leone Arianna , Miserocchi Chiara , Andreozzi Laura , Levi della Vida Francesca , Pessina Achille Cesare , Lima Mario , Pession Andrea
Published: December 2019

Aim: A gluten-free diet (GFD) can expose children to excessive calories and fat intake. The study is intended to verify whether and how food intake, laboratory parameters, and growth are modified by a year of GFD. Methods: In 79 CD (coeliac disease) children (mean age 7.9 ± 3.8 years, 52 females, 27 males) diagnosed over 24 months, 24-h food diaries, food-frequency patterns, anthropometric and laboratory parameters (mainly blood sugar, insulin, lipid profile, and homocysteine) were prospectively collected before and during the first year of GFD. Nutrient intakes were compared over time and with recommendations. They were also used as regressors to explain the levels and changes of metabolic and growth variables. p-values < 0.05 were considered statistically significant. Results: Average macronutrient intake did not change during the year. Caloric intake remained below 90% (p ≤ 0.0001) and protein intake above 200% (p ≤ 0.0001) of recommendations. Lipid intake was stable at 34% of overall energy intake. Unsaturated fats increased (less omega-6 and more omega-3 with a ratio improvement from 13.3 ± 5.5 to 8.8 ± 3.1) and so did fibers, while folate decreased. The children who experienced a containment in their caloric intake during the year, presented a slower catch-up growth. Some differences were found across gender and age groups. In particular, adolescents consumed less calories, and females more omega-3. Fiber and simple sugar intakes emerged as implicated in lipid profile shift: fibers negatively with triglycerides (TG) (p = 0.033), simple sugars negatively with high-density lipoprotein (HDL) (p = 0.056) and positively with TG (p = 0.004). Waist-to-height ratio was positively associated with homocysteine (p = 0.018) and Homeostasis Model Assessment (p = 0.001), negatively with fibers (p = 0.004). Conclusion: In the short run, GFD is nutritionally very similar to any diet with gluten, with some improvements in unsaturated fats and fiber intake. Along with simple sugars containment, this may offer CD patients the opportunity for a fresh start. Caloric intakes may shift and should be monitored, especially in adolescents.
Sexually Dimorphic Response of Increasing Dietary Intake of High Amylose Wheat on Metabolic and Reproductive Outcomes in Male and Female Mice
Authors: Lim See Meng , Page Amanda J. , Li Hui , Carragher John , Searle Iain , Robertson Sarah , Muhlhausler Beverly
Published: December 2019

High amylose wheat (HAW) has a higher resistant starch content and lower glycaemic index than standard amylose wheat (SAW), which may be associated with health benefits. This study aimed to determine the effects of replacing SAW with HAW on metabolic and reproductive parameters in male and female mice. Male and female C57BL/6 mice were randomly divided into groups (n = 8/group/sex) and fed either a SAW65 (65% SAW w/w; control), HAW35 (35% HAW w/w), HAW50 (50% HAW w/w) or HAW65 (65% HAW w/w) diet for eight weeks. In male but not female, the HAW65 group had a lower abdominal circumference, relative total fat mass, relative gonadal fat mass and plasma leptin concentration compared to the HAW35 group. There were no differences in fasting blood glucose concentrations or plasma concentrations of cholesterol, triglycerides or non-esterified fatty acids between groups in either males or females. The HAW-fed males had a higher testicular weight and HAW-fed females spent less time in diestrus and a longer time in metestrus compared to the SAW-fed mice. Higher dietary intake of HAW appears to reduce abdominal fat deposition compared to the lower level of HAW in a sexually dimorphic manner. The impacts on reproductive parameters in the HAW-fed mice require further investigation.
Urinary TMAO Levels Are Associated with the Taxonomic Composition of the Gut Microbiota and with the Choline TMA-Lyase Gene (cutC) Harbored by Enterobacteriaceae
Authors: Dalla Via Alessandro , Gargari Giorgio , Taverniti Valentina , Rondini Greta , Velardi Ilaria , Gambaro Veniero , Visconti Giacomo Luca , De Vitis Valerio , Gardana Claudio , Ragg Enzio , Pinto Andrea , Riso Patrizia , Guglielmetti Simone
Published: December 2019

Gut microbiota metabolization of dietary choline may promote atherosclerosis through trimethylamine (TMA), which is rapidly absorbed and converted in the liver to proatherogenic trimethylamine-N-oxide (TMAO). The aim of this study was to verify whether TMAO urinary levels may be associated with the fecal relative abundance of specific bacterial taxa and the bacterial choline TMA-lyase gene cutC. The analysis of sequences available in GenBank grouped the cutC gene into two main clusters, cut-Dd and cut-Kp. A quantitative real-time polymerase chain reaction (qPCR) protocol was developed to quantify cutC and was used with DNA isolated from three fecal samples collected weekly over the course of three consecutive weeks from 16 healthy adults. The same DNA was used for 16S rRNA gene profiling. Concomitantly, urine was used to quantify TMAO by ultra-performance liquid chromatography coupled with tandem mass spectrometry (UPLC-MS/MS). All samples were positive for cutC and TMAO. Correlation analysis showed that the cut-Kp gene cluster was significantly associated with Enterobacteriaceae. Linear mixed models revealed that urinary TMAO levels may be predicted by fecal cut-Kp and by 23 operational taxonomic units (OTUs). Most of the OTUs significantly associated with TMAO were also significantly associated with cut-Kp, confirming the possible relationship between these two factors. In conclusion, this preliminary method-development study suggests the existence of a relationship between TMAO excreted in urine, specific fecal bacterial OTUs, and a cutC subgroup ascribable to the choline-TMA conversion enzymes of Enterobacteriaceae.
Chromosomal Conjugative and Mobilizable Elements in Streptococcus suis: Major Actors in the Spreading of Antimicrobial Resistance and Bacteriocin Synthesis Genes
Authors: Libante Virginie , Nombre Yves , Coluzzi Charles , Staub Johan , Guédon Gérard , Gottschalk Marcelo , Teatero Sarah , Fittipaldi Nahuel , Leblond-Bourget Nathalie , Payot Sophie
Published: December 2019

Streptococcus suis is a zoonotic pathogen suspected to be a reservoir of antimicrobial resistance (AMR) genes. The genomes of 214 strains of 27 serotypes were screened for AMR genes and chromosomal Mobile Genetic Elements (MGEs), in particular Integrative Conjugative Elements (ICEs) and Integrative Mobilizable Elements (IMEs). The functionality of two ICEs that host IMEs carrying AMR genes was investigated by excision tests and conjugation experiments. In silico search revealed 416 ICE-related and 457 IME-related elements. These MGEs exhibit an impressive diversity and plasticity with tandem accretions, integration of ICEs or IMEs inside ICEs and recombination between the elements. All of the detected 393 AMR genes are carried by MGEs. As previously described, ICEs are major vehicles of AMR genes in S. suis. Tn5252-related ICEs also appear to carry bacteriocin clusters. Furthermore, whereas the association of IME-AMR genes has never been described in S. suis, we found that most AMR genes are actually carried by IMEs. The autonomous transfer of an ICE to another bacterial species (Streptococcus thermophilus)—leading to the cis-mobilization of an IME carrying tet(O)—was obtained. These results show that besides ICEs, IMEs likely play a major role in the dissemination of AMR genes in S. suis.
Biological Applications of Thiocarbohydrazones and Their Metal Complexes: A Perspective Review
Authors: Bonaccorso Carmela , Marzo Tiziano , La Mendola Diego
Published: December 2019

Although organic compounds account for more than 99% of currently approved clinical drugs, the established clinical use of cisplatin in cancer or auranofin in rheumatoid arthritis have paved the way to several research initiatives to identify metal-based drugs for a wide range of human diseases. Nitrogen and sulfur donor ligands, characterized by different binding motifs, have been the subject in recent years of one of the main research areas in coordination chemistry. Among the nitrogen/sulfur compounds, very little is known about thiocarbohydrazones (TCH), the higher homologues of the well-known thiosemicarbazones (TSC), and their metal complexes. The extra hydrazine moiety provides the ligands of variable metal binding modes, structural diversity and promising biological implications. The interesting coordination chemistry of TCH has mainly been focused on symmetric derivatives, which are relatively simple to synthesize while few examples of asymmetric ligands have been reported. This informative review on TCHs and their metal complexes will be helpful for improving the design of metal-based pharmaceuticals for applications ranging from anticancer to antinfective therapy.
Dissolution Advantage of Nitazoxanide Cocrystals in the Presence of Cellulosic Polymers
Authors: Salas-Zúñiga Reynaldo , Rodríguez-Ruiz Christian , Höpfl Herbert , Morales-Rojas Hugo , Sánchez-Guadarrama Obdulia , Rodríguez-Cuamatzi Patricia , Herrera-Ruiz Dea
Published: December 2019

The effect of hydroxypropyl methylcellulose (HPMC) and methylcellulose (Methocel® 60 HG) on the dissolution behavior of two cocrystals derived from nitazoxanide (NTZ), viz., nitazoxanide-glutaric acid (NTZ-GLU, 1:1) and nitazoxanide-succinic acid (NTZ-SUC, 2:1), was explored. Powder dissolution experiments under non-sink conditions showed similar dissolution profiles for the cocrystals and pure NTZ. However, pre-dissolved cellulosic polymer in the phosphate dissolution medium (pH 7.5) modified the dissolution profile of NTZ when starting from the cocrystals, achieving transient drug supersaturation. Subsequent dissolution studies under sink conditions of polymer-based pharmaceutical powder formulations with NTZ-SUC cocrystals gave a significant improvement of the apparent solubility of NTZ when compared with analogous formulations of pure NTZ and the physical mixture of NTZ and SUC. Scanning electron microscopy and powder X-ray diffraction analysis of samples recovered after the powder dissolution studies showed that the cocrystals undergo fast dissolution, drug supersaturation and precipitation both in the absence and presence of polymer, suggesting that the solubilization enhancement is due to polymer-induced delay of nucleation and crystal growth of the less soluble NTZ form. The study demonstrates that the incorporation of an appropriate excipient in adequate concentration can be a key factor for inducing and maintaining the solubilization of poorly soluble drugs starting from co-crystallized solid forms. In such a way, cocrystals can be suitable for the development of solid dosage forms with improved bioavailability and efficacy in the treatment of important parasitic and viral diseases, among others.
Numerical Study of Resonant Optical Parametric Amplification via Gain Factor Optimization in Dispersive Microresonators
Authors: Aşırım Özüm Emre , Kuzuoğlu Mustafa
Published: December 2019

The achievement of wideband high-gain optical parametric amplification has not been shown in micrometer-scale cavities. In this paper we have computationally investigated the optical parametric amplification process in a few micrometer-long dispersive microresonator. By performing a gain medium resonance frequency dependent analysis of optical parametric amplification, we have found that it is possible to achieve a wideband high-gain optical amplification in a dispersive microresonator. In order to account for the effects of dispersion (modeled by the polarization damping coefficient) and the resonance frequency of the gain medium on optical parametric amplification, we have solved the wave equation in parallel with the nonlinear equation of electron cloud motion, using the finite difference time domain method. Then we have determined the resonance frequency values that yield an enhanced or a resonant case of optical parametric amplification, via gain factor optimization. It was observed that if the microresonator is more dispersive (has a lower polarization damping coefficient), then there are more resonance frequencies that yield an optical gain resonance. At these gain resonances, a very wideband, high-gain optical amplification seems possible in the micron scale, which, to our knowledge, has not been previously reported in the context of nonlinear wave mixing theory.
Progress in a Vacuum Weight Search Experiment
Authors: Avino Saverio , Calloni Enrico , Caprara Sergio , De Laurentis Martina , De Rosa Rosario , Di Girolamo Tristano , Errico Luciano , Gagliardi Gianluca , Grilli Marco , Mangano Valentina , Marsella Maria Antonietta , Naticchioni Luca , Pepe Giovanni Piero , Perciballi Maurizio , Pillant Gabriel , Puppo Paola , Rapagnani Piero , Ricci Fulvio , Rosa Luigi , Rovelli Carlo , Ruggi Paolo , Saini Naurang L. , Stornaiuolo Daniela , Tafuri Francesco , Tagliacozzo Arturo
Published: December 2019

We present the status of the art of the Archimedes experiment, devoted to measuring the debated interaction of quantum vacuum fluctuations and gravity. The method is essentially the weighing of the transition energy of a layered superconductor where the contribution of vacuum energy to the transition energy is expected to be relevant. The transition is obtained by modulating the temperature of the superconducting sample at a frequency of about 10 mHz and the expected change of weight is measured with a suitably designed high sensitivity cryogenic beam balance. In this paper, we present an overview of the experiment, discussing the expected signal to be measured, and presenting in particular the result of a prototype balance operated in our present laboratory. In the frequency range of the measurement, the sensitivity is affected mainly by seismic, thermal, sensor, and control noise. We discuss these points showing in particular the design of the cryogenic apparatus, the final balance, and the quiet seismic site that will host the final measurement.
Promising Potential of Lonchocarpus utilis against South American Myasis
Authors: Luzuriaga-Quichimbo Carmen X. , Blanco-Salas José , Cerón-Martínez Carlos E. , Alías-Gallego Juan Carlos , Ruiz-Téllez Trinidad
Published: December 2019

Traditional medicine is especially important in the treatment of neglected tropical diseases because it is the way the majority of populations of affected countries manage primary healthcare. We present a case study that can serve as an example that can be replicated by others in the same situation. It is about the validation of a local remedy for myasis in Amazonian Ecuador, which is contrasted by bibliographic chemical reviews and in silico activity tests. We look for scientific arguments to demonstrate the reason for using extracts of Lonchocarpus utilis against south American myasis (tupe). We provide a summary of the isoflavonoids, prenylated flavonoids, chalcones, and stilbenes that justify the action. We make modeling predictions on the affinity of eight chemical components and enzyme targets using Swiss Target Prediction software. We conclude that the effects of this extract can be reasonably attributed to an effect of the parasite that causes the disease, similar to the one produced by synthetic drugs used by conventional medicine (e.g., Ivermectine).
Applications and Trends of Machine Learning in Genomics and Phenomics for Next-Generation Breeding
Authors: Esposito Salvatore , Carputo Domenico , Cardi Teodoro , Tripodi Pasquale
Published: December 2019

Crops are the major source of food supply and raw materials for the processing industry. A balance between crop production and food consumption is continually threatened by plant diseases and adverse environmental conditions. This leads to serious losses every year and results in food shortages, particularly in developing countries. Presently, cutting-edge technologies for genome sequencing and phenotyping of crops combined with progress in computational sciences are leading a revolution in plant breeding, boosting the identification of the genetic basis of traits at a precision never reached before. In this frame, machine learning (ML) plays a pivotal role in data-mining and analysis, providing relevant information for decision-making towards achieving breeding targets. To this end, we summarize the recent progress in next-generation sequencing and the role of phenotyping technologies in genomics-assisted breeding toward the exploitation of the natural variation and the identification of target genes. We also explore the application of ML in managing big data and predictive models, reporting a case study using microRNAs (miRNAs) to identify genes related to stress conditions.
Root Development of Bell Pepper (Capsicum annuum L.) as Affected by Water Salinity and Sink Strength
Authors: Erel Ran , T. Le Thuc , Eshel Amram , Cohen Shabtai , Offenbach Rivka , Strijker Tobias , Shtein Ilana
Published: December 2019

Fruits are the dominant sinks for assimilates. At optimal conditions, assimilates supply can meet the demand of fruits and those of the vegetative organs; however, extreme circumstances such as strong sink strength or an environmental stress may disturb this fine balance. While most studies focus on aboveground parameters, information regarding root growth dynamics under variable sink strength are scarce. The objective of this study was to evaluate the effect of sink strength (represented by fruit load) and salinity on bell-pepper root development. Three levels of fruit load were combined with two salinity levels in plants grown in an aeroponic system. Root growth was determined both by root capacitance and destructive measurements. Salinity and sink strength significantly affected root, shoot and fruit growth dynamics. Root growth was less affected by fruit load. Salinity stress was negatively associated with shoot growth, but after an acclimation period, salinity enhanced root development. Additionally, this study shows for the first time that root capacitance is a valid approach for non-destructive measurement of root development in aeroponic systems. The good correlation measured by us (r2 0.86) opens new opportunities for continuous root growth monitoring in aeroponic systems in the future.
Identification and Characterization of Phosphoproteins in Somatic Embryogenesis Acquisition during Oil Palm Tissue Culture
Authors: Aroonluk Suvichark , Roytrakul Sittiruk , Jantasuriyarat Chatchawan
Published: December 2019

Somatic embryogenesis during oil palm tissue culture is a long process. The identification of the proteins that control this process may help to shorten the time of oil palm tissue culture. We collected embryogenic callus and somatic embryos at the globular, torpedo, and cotyledon maturation stages, as well as from plantlets, for total protein extraction. An enrichment column was used to enrich the phosphoproteins, which were subjected to tryptic enzyme digestion. Each sample was analyzed with nano-liquid chromatography–tandem mass spectrometry (nano LC-MS/MS). A total of 460 phosphoproteins were identified and analyzed. The functional characterization of phosphoproteins were observed as highest in the metabolic process, protein/nucleotide/ion binding, and membrane component. The different phosphoproteins are involved in the control of vegetative growth, cellular differentiation, cell morphogenesis, and signaling roles in plants. The Quantitative Real-Time Reverse Transcription-PCR technique (qPCR) was successfully used to verify the expression of genes, and the results were consistent with the level of protein expression from nano-LC-MS/MS. The E3 ubiquitin-protein ligase and sister chromatid cohesion PDS5 were specifically expressed only in the somatic embryo and plantlet, and these could be used as protein biomarkers to determine the oil palm somatic embryo maturation stage. This study sheds light on the protein phosphorylation mechanism that regulates somatic embryogenesis transition during oil palm tissue culture.