bluuebunny/crossref_metadata_2025 huggingface dataset:
Cytoplasmic male sterility and abortive seed traits generated through mitochondrial genome editing coupled with allotopic expression of atp1 in tobacco
Authors: Dewey Ralph E. , Selote Devarshi , Griffin H. Carol , Dickey Allison N. , Jantz Derek , Smith J. Jeff , Matthiadis Anna , Strable Josh , Kestell Caitlin , Smith William A.
Published: September 2023

Allotopic expression is the term given for the deliberate relocation of gene function from an organellar genome to the nuclear genome. We hypothesized that the allotopic expression of an essential mitochondrial gene using a promoter that expressed efficiently in all cell types except those responsible for male reproduction would yield a cytoplasmic male sterility (CMS) phenotype once the endogenous mitochondrial gene was inactivated via genome editing. To test this, we repurposed the mitochondrially encoded atp1 gene of tobacco to function in the nucleus under the transcriptional control of a CaMV 35S promoter (construct 35S:nATP1), a promoter that has been shown to be minimally expressed in early stages of anther development. The endogenous atp1 gene was eliminated (Δatp1) from 35S:nATP1 tobacco plants using custom-designed meganucleases directed to the mitochondria. Vegetative growth of most 35S:nATP1/Δatp1 plants appeared normal, but upon flowering produced malformed anthers that failed to shed pollen. When 35S:nATP1/Δatp1 plants were cross-pollinated, ovary/capsule development appeared normal, but the vast majority of the resultant seeds were small, largely hollow and failed to germinate, a phenotype akin to the seedless trait known as stenospermocarpy. Characterization of the mitochondrial genomes from three independent Δatp1 events suggested that spontaneous recombination over regions of microhomology and substoichiometric shifting were the mechanisms responsible for atp1 elimination and genome rearrangement in response to exposure to the atp1-targeting meganucleases. Should the results reported here in tobacco prove to be translatable to other crop species, then multiple applications of allotopic expression of an essential mitochondrial gene followed by its elimination through genome editing can be envisaged. Depending on the promoter(s) used to drive the allotopic gene, this technology may have potential application in the areas of: (1) CMS trait development for use in hybrid seed production; (2) seedless fruit production; and (3) transgene containment.
Aerobic exercise improves sleep in U. S. active duty service members following brief treatment for posttraumatic stress disorder symptoms
Authors: Young-McCaughan Stacey , Straud Casey L. , Bumstead Susannah , Pruiksma Kristi E. , Taylor Daniel J. , Jacoby Vanessa M. , Yarvis Jeffrey S. , Peterson Alan L.
Published: September 2023

Introduction

Physical exercise is a lifestyle intervention that can positively impact aspects of physical and psychological health. There is a growing body of evidence suggesting that physical exercise, sleep, and PTSD are interrelated. This study investigated possible relationships. Three research questions were posed: (1) Did randomization to an aerobic exercise intervention reduce insomnia more than being randomized to an intervention without exercise, (2) Did change in sleep predict change in PTSD symptoms, and (3) Did change in sleep impact the relationship between exercise and PTSD symptom reductions?

Methods

Data were collected from 69 treatment-seeking active duty service members with PTSD symptoms randomized into one of four conditions; two conditions included aerobic exercise, and two conditions did not include exercise. Participants in the exercise groups exercised five times per week keeping their heart rate > 60% of their heart rate reserve for 20–25 min.

Results

At baseline, 58% of participants reported moderate or severe insomnia. PTSD symptom severity decreased following treatment for all groups (p < 0.001). Participants randomized to exercise reported greater reductions in insomnia compared to those in the no exercise group (p = 0.47). However, change in insomnia did not predict change in PTSD symptoms nor did it significantly impact the relationship between exercise and PTSD symptom reductions.

Discussion

Adding exercise to evidence-based treatments for PTSD could reduce sleep disturbance, a characteristic of PTSD not directly addressed with behavioral therapies. A better understanding of exercise as a lifestyle intervention that can reduce PTSD symptoms and insomnia is warranted.
Exploring the risk of glycemic variability in non-diabetic depressive individuals: a cross-sectional GlyDep pilot study
Authors: Mishra Shivang , Singh Anurag Kumar , Rajotiya Sumit , Singh Pratima , Raj Preeti , Bareth Hemant , Singh Mahaveer , Jagawat Tushar , Nathiya Deepak , Tomar Balvir Singh
Published: September 2023

Background

Data on the correlation between glycemic variability and depression in nondiabetic patients remain limited. Considering the link between increased glycemic variability and cardiovascular risks, this relationship could be significant in depressed patients.

Methods

In this single-center pilot study, we utilized Flash Glucose Monitoring (Abbott Libre Pro) to study glycemic variability. The CES-D (Center for Epidemiological Studies– Depression) scale was employed to measure depression levels. Based on CES-D scores, patients were classified into two groups: those with scores ≥ 33 and those with scores < 33. We analyzed various glycemic variability indices, including HBGI, CONGA, ADDR, MAGE, MAG, LI, and J-Index, employing the EasyGV version 9.0 software. SPSS (version 28) facilitated the data analysis.

Results

We screened patients with depression visiting the department of psychiatry, FGM was inserted in eligible patients of both the groups which yielded a data of 196 patient-days (98 patient-days for CES-D ≥ 33 and 98 patient-days for CES-D < 33). The glycemic variability indices CONGA (mg/dl), (76.48 ± 11.9 vs. 65.08 ± 7.12) (p = 0.048), MAGE (mg/dl) (262.50 ± 25.65 vs. 227.54 ± 17.72) (p = 0.012), MODD (mg/dl) (18.59 ± 2.77 vs. 13.14 ± 2.39) (p = 0.002), MAG(mg/dl) (92.07 ± 6.24vs. 63.86 ± 9.38) (p = <0.001) were found to be significantly higher in the CES-D ≥ 33 group.

Conclusion

Patients with more severe depressive symptoms, as suggested by CES-D ≥ 33, had higher glycemic variability.
The healthy moms and babies app to prevent postpartum depression: analysis of user-profiles and dropout cases
Authors: Rodriguez-Muñoz María F. , Kovacheva Katina , García-López Helena S. , Le Huynh-Nhu , Ruiz Natalia , Olivares Maria Eugenia , Izquierdo Mendez Nuria , Coronado Pluvio
Published: September 2023

Introduction

Perinatal depression affects mothers, babies and society. Preventive interventions are needed, but face barriers to access. E-health interventions could be an effective and accessible option. To date, few studies have attempted to understand the use of mobile health (m-health) applications and why they are not more widely used. This study aims to understand the demographic characteristics of enrolled participants and examine dropout patterns through the Healthy Moms and Babies app.

Methods

A longitudinal study was conducted with a sample of 511 women recruited between 2020 and 2022. Data were collected from the app, including sociodemographic information, the participant’s progress through the modules of the app, and the permissions granted to use the app.

Results

Out of the 511 women who completed the initial form to initiate participation, 279 downloaded the app and completed the evaluation. Results indicated that granting permission to be notified about the module’s availability is related to an increase in the use of the first modules.

Conclusion

This study shows the importance of establishing follow-ups in the use of mobile apps during the perinatal period.
Prevalence of falls, injury from falls and associations with chronic diseases among community-dwelling older adults in Guangzhou, China: a cross-sectional study
Authors: Lin Wei-Quan , Lin Lin , Sun Si-Yu , Yuan Le-Xin , Sun Min-Ying , Wang Chang , Chen Jia-Min , Li Yao-Hui , Zhou Qin , Wu Di , Huang Ting-Yuan , Liang Bo-Heng , Liu Hui
Published: September 2023

Introduction

As a developing country with the largest older adult population in the world, strengthening the research on falls among the older adults is undoubtedly an urgent item in China. This study aimed to explore the prevalence and risk factors associated with falls and injury from falls among community-dwelling older adults in Guangzhou, China, particularly focusing on their associations with chronic diseases.

Methods

A total of 1,629 participants aged 65 years and above were selected from 11 counties in Guangzhou by the multi-stage stratified random sampling method in 2021. Socio-demographic characteristics, health and lifestyle factors, the status of falls, and injury from falls were measured by structured questionnaires through face-to-face interviews. Chi-square tests and logistic regression analysis were used to identify factors associated with falls and injury from falls. Chord diagrams were used to explore their associations with chronic diseases.

Results

A total of 251 participants (15.41%, 95% CI: 13.98%−17.25%) reported falls, and 162 participants (9.46%, 95% CI:7.72%−11.55%) indicated an injury from falls. Logistic regression analysis showed the results as follows: female patients (adjusted OR = 1.721, 95% CI: 1.681–1.761) aged ≥80 years (1.910, 1.847–1.975), unemployed (1.226, 1.171–1.284), uninsured (1.555, 1.448–1.671), average monthly household income of 2,001–4,000 CNY (1.878, 1.827–1.930), number of services provided by the community health center ≥13 times per year (1.428, 1.383–1.475), illness within 2 weeks (1.633, 1.595–1.672), high-intensity physical activity (2.254, 2.191–2.32), sedentary (1.094, 1.070–1.117), and number of chronic disease illnesses ≥3 (1.930, 1.870–1.993). Meanwhile, those risk factors were also associated with injury from falls. The older adults with medium-intensity physical activity were at lower risk (0.721, 0.705–0.737) of falls and higher risk (1.086, 1.057–1.117) of being injured from falls. Chord diagrams showed the correlations between chronic diseases and falls and injury from falls among community-dwelling older adults in Guangzhou, China.

Conclusion

The high prevalence of falls is found among community-dwelling older adults in Guangzhou, China, which is related to multiple factors such as demographic variables, lifestyle, and health status, especially for chronic diseases. Therefore, targeted interventions should be developed and implemented urgently.
AI in the Loop: functionalizing fold performance disagreement to monitor automated medical image segmentation workflows
Authors: Gottlich Harrison C. , Korfiatis Panagiotis , Gregory Adriana V. , Kline Timothy L.
Published: September 2023

Introduction

Methods that automatically flag poor performing predictions are drastically needed to safely implement machine learning workflows into clinical practice as well as to identify difficult cases during model training.

Methods

Disagreement between the fivefold cross-validation sub-models was quantified using dice scores between folds and summarized as a surrogate for model confidence. The summarized Interfold Dices were compared with thresholds informed by human interobserver values to determine whether final ensemble model performance should be manually reviewed.

Results

The method on all tasks efficiently flagged poor segmented images without consulting a reference standard. Using the median Interfold Dice for comparison, substantial dice score improvements after excluding flagged images was noted for the in-domain CT (0.85 ± 0.20 to 0.91 ± 0.08, 8/50 images flagged) and MR (0.76 ± 0.27 to 0.85 ± 0.09, 8/50 images flagged). Most impressively, there were dramatic dice score improvements in the simulated out-of-distribution task where the model was trained on a radical nephrectomy dataset with different contrast phases predicting a partial nephrectomy all cortico-medullary phase dataset (0.67 ± 0.36 to 0.89 ± 0.10, 122/300 images flagged).

Discussion

Comparing interfold sub-model disagreement against human interobserver values is an effective and efficient way to assess automated predictions when a reference standard is not available. This functionality provides a necessary safeguard to patient care important to safely implement automated medical image segmentation workflows.
Evaluation of quantitative biomarkers of aging in human PBMCs
Authors: Owen Brady M. , Phie James , Huynh Jennifer , Needham Scott , Fraser Cameron
Published: September 2023

Functional decline with age contributes significantly to the burden of disease in developed countries. There is growing interest in the development of therapeutic interventions which slow or even reverse aging. Time and cost constraints prohibit the testing of a large number of interventions for health and lifespan extension in model organisms. Cell-based models of aging could enable high throughput testing of potential interventions. Despite extensive reports in the literature of cell properties that correlate with donor age, few are robustly observed across different laboratories. This casts doubt on the extent that aging signatures are captured in cultured cells. We tested molecular changes previously reported to correlate with donor age in peripheral blood mononuclear cells (PBMCs) and evaluated their suitability for inclusion in a panel of functional aging measures. The tested measures spanned several pathways implicated in aging including epigenetic changes, apoptosis, proteostasis, and intracellular communication. Surprisingly, only two markers correlated with donor age. DNA methylation age accurately predicted donor age confirming this is a robust aging biomarker. Additionally, the apoptotic marker CD95 correlated with donor age but only within subsets of PBMCs. To demonstrate cellular rejuvenation in response to a treatment will require integration of multiple read-outs of cell function. However, building a panel of measures to detect aging in cells is challenging and further research is needed to identify robust predictors of age in humans.
Advanced care planning in the early phase of COVID-19: a rapid review of the practice and policy lessons learned
Authors: Younan Sarah , Cardona Magnolia , Sahay Ashlyn , Willis Eileen , Ni Chroinin Danielle
Published: September 2023

Background

The importance of advance care planning (ACP) has been highlighted by the advent of life-threatening COVID-19. Anecdotal evidence suggests changes in implementation of policies and procedures is needed to support uptake of ACPs. We investigated the barriers and enablers of ACP in the COVID-19 context and identify recommendations to facilitate ACP, to inform future policy and practice.

Methods

We adopted the WHO recommendation of using rapid reviews for the production of actionable evidence for this study. We searched PUBMED from January 2020 to April 2021. All study designs including commentaries were included that focused on ACPs during COVID-19. Preprints/unpublished papers and Non-English language articles were excluded. Titles and abstracts were screened, full-texts were reviewed, and discrepancies resolved by discussion until consensus.

Results

From amongst 343 papers screened, 123 underwent full-text review. In total, 74 papers were included, comprising commentaries (39) and primary research studies covering cohorts, reviews, case studies, and cross-sectional designs (35). The various study types and settings such as hospitals, outpatient services, aged care and community indicated widespread interest in accelerating ACP documentation to facilitate management decisions and care which is unwanted/not aligned with goals. Enablers of ACP included targeted public awareness, availability of telehealth, easy access to online tools and adopting person-centered approach, respectful of patient autonomy and values. The emerging barriers were uncertainty regarding clinical outcomes, cultural and communication difficulties, barriers associated with legal and ethical considerations, infection control restrictions, lack of time, and limited resources and support systems.

Conclusion

The pandemic has provided opportunities for rapid implementation of ACP in creative ways to circumvent social distancing restrictions and high demand for health services. This review suggests the pandemic has provided some impetus to drive adaptable ACP conversations at individual, local, and international levels, affording an opportunity for longer term improvements in ACP practice and patient care. The enablers of ACP and the accelerated adoption evident here will hopefully continue to be part of everyday practice, with or without the pandemic.
Treatment of steroid-refractory graft versus host disease in children
Authors: Gottardi Francesca , Leardini Davide , Muratore Edoardo , Baccelli Francesco , Cerasi Sara , Venturelli Francesco , Zanaroli Andrea , Belotti Tamara , Prete Arcangelo , Masetti Riccardo
Published: September 2023

Systemic steroids are still the first-line approach in acute graft-versus-host disease (aGvHD), and the backbone of chronic GvHD management. Refractoriness to steroid represent a major cause of morbidity and non-relapse mortality after hematopoietic stem cell transplantation (HSCT). In both backgrounds, several second-line immunosuppressive agents have been tested with variable results in terms of efficacy and toxicity. Solid evidence regarding these approaches is still lacking in the pediatric setting where results are mainly derived from adult experiences. Furthermore, the number of treated patients is limited and the incidence of acute and chronic GvHD is lower, resulting in a very heterogeneous approach to this complication by pediatric hematologists. Some conventional therapies and anti-cytokine monoclonal antibodies used in the adult setting have been evaluated in children. In recent years, the increasing understanding of the biological mechanisms underpinning the pathogenesis of GvHD justified the efforts toward the adoption of targeted therapies and non-pharmacologic approaches, with higher response rates and lower immunosuppressive effects. Moreover, many questions regarding the precise timing and setting in which to integrate these new approaches remain unanswered. This Review aims to critically explore the current evidence regarding novel approaches to treat SR-GvHD in pediatric HSCT recipients.
Males and females have similar neuromuscular coordination strategies of the quadriceps during fatiguing repeated all-out cycling
Authors: Cederbaum Lauren A. , Yoon SangHoon , Côté Julie N.
Published: September 2023

Introduction

An imbalance of vastus medialis (VM) and vastus lateralis (VL) muscle activation and patterns of dyscoordination may contribute to the sex discrepancy in the incidence of patellofemoral pain syndrome (PFPS). While some studies have examined sex-specific VM/VL coordination strategies in some tasks, no previous studies have examined sex-specific VM/VL coordination strategies during repeated sprint exercise (RSE).

Methods

In this study, asymptomatic young adults (N = 39, 19 females) completed a RSE protocol consisting of 10 × 10 s all-out cycling interspersed by 30 s of passive rest. Electromyographic (EMG) signals from the VM and VL muscles were recorded throughout exercise.

Results

VM:VL ratio did not change with fatigue and was not different between the sexes. From sprint 1 to 10, VM-VL onset delay increased from 9.62 to 16.95 ms and from 19.28 to 45.09 ms in males and females, respectively (p < 0.001); however, no sex difference was found (p = 0.524). Muscle activation amplitude plateaued at different sprint repetitions in males and females while mechanical work plateaued at similar repetitions.

Discussion

These findings suggest that sex differences in the incidence of PFPS may not be influenced by VM/VL muscle coordination as assessed by EMG.
Erinaceus coronavirus persistence in hedgehogs (Erinaceus europaeus) in a non-invasive, in vivo, experimental setting
Authors: De Sabato Luca , Ianiro Giovanni , Manzia Francesca , Monini Marina , Chiappini Barbara , Di Bartolo Ilaria , Vaccari Gabriele
Published: September 2023

In the last 20 years, new zoonotic CoV strains have emerged (SARS-CoV, MERS-CoV, and SARS-CoV-2), and new species have also been reported in animals. In Europe, the Erinaceus coronavirus (EriCoV) was recently described inErinaceus europaeus. However, information on the prevalence and duration of viral shedding is unknown. In this study, feces samples were collected from 102 European hedgehogs hosted in the Center for the Recovery of Wild Fauna in Rome and analyzed for the presence of EriCoV RNA by Reverse Transcription-PCR. In total, 45 animals (44.1%) resulted positive for EriCoV at the first sampling and 63 (61.7%) animals were positive at the follow-up, which was performed from the 3rd to the 86th day. The duration of fecal virus shedding showed a mean duration of 22.8 days and lasted up to 62 days. Eighteen hedgehogs showed intermittent viral shedding. Phylogenetic analysis showed a correlation with EriCoV strains reported in Germany, the United Kingdom, and northern Italy. None of the EriCoV sequences showed the CD200 ortholog insertion, previously observed in strains isolated in animals from northern Italy. Interestingly, all but one animal revealed the presence in their feces of the same EriCoV sequences, analyzing the short genomic region at 3' spike gene and 5' ORF3a 500bp fragment (100% nt.id.) in both first and follow-up samples. This result suggests that animals were infected with the same strain during their stay at the center. Our results confirm that EriCoV can persist in hedgehogs for a long period, underlining that hedgehogs are an important commensal reservoir forMerbecovirus. A long duration of viral shedding increases the likelihood that the virus will spread in the environment.
Parameter Identification of Pilot Model and Stability Analysis of Human-in-Loop Image Seeker
Authors: Zhang Yi , Li Tao , Li Yanning , Wang Gen
Published: September 2023

In the human-in-loop (HIL) guidance mode, a pilot quickly identifies and flexibly locks on to a target through a real-time image signal transmitted by the aircraft. Then, the line-of-sight (LOS) angle error in the viewing field is tracked and compensated for in order to improve the guidance and control performance of the image-guided aircraft. Based on the physical structure and device parameters of the image seeker, an appropriate correction network is designed to improve the performance of the seeker stability loop. Aiming at a precise-extended crossover (PEC) pilot model, the structure of the dynamic model is optimized, and the maximum likelihood estimation (MLE) method of the output error structure is used to identify the dynamic parameters. This makes up for the deficiency of the existing modeling. In order to solve the nonlinear optimization problems encountered in the identification process, a hybrid strategy of a genetic algorithm (GA) and Gauss–Newton optimization algorithm is used to improve the probability of finding the global optimal solution. The simplex method is also used to improve the robustness of the algorithm. In addition, a hardware-in-the-loop simulation is designed and multi-round HIL experiment flow is performed. Moreover, based on the adaptability of the pilot to different image signal delays, the effects of different image signal delays on the stability and disturbance rejection rate (DRR) of the seeker control system are studied. The results demonstrate that the hybrid gradient optimization algorithm (HGOA) can find the global optimal value, and the identification model can accurately reflect the dynamic characteristics of the pilot. In the HIL guidance mode, the tracking compensation behavior of the pilot can reduce the influence of image signal delay on the disturbance of the aircraft body isolated by the seeker. The optimized PEC model and the identified dynamic parameters improve the efficiency of pilot training and screening.
A Turbulent Inflow Generation Method for the LES of High Re Flow by Scaling Low Re Flow Data
Authors: Luo Lei , Ji Honghu
Published: September 2023

The rescaling–recycling method (RRM) is usually used to generate turbulent inflow for the LES of compressible wall-bounded flows, which can lead to relatively high computational cost for high Re flows since the mesh resolution increases exponentially with Re number. A turbulent inflow generation method based on the scaling of low Re flow, referred as TIG-LowRe, is proposed, aiming at reducing the computational cost when applying the RRM. To validate the proposed method, the TIG-LowRe method was applied to generate turbulent inflow for the LES of a non-isothermal round jet flow at Re = 86,000. Two cases were carried out with the inflow generated based on two round pipe flows at Re = 10,000 and 24,000. The results show that the mean and fluctuating temperatures of the two cases agree well with the experimental data. In the case of low Re flow at Re = 10,000, the jet flow decays too fast along the axial direction, the mean and fluctuating axial velocities are over-predicted and the radial fluctuating velocity is under-predicted. By increasing the Re of the low Re flow to 24,000, the decay rate of the jet flow decreases and the accuracies of the mean and fluctuating axial velocities are obviously improved, while the radial fluctuating velocity shifts further away from the experimental data. The main reason for the difference between the two cases is that more fine turbulent structure of the inflow in case-Re10000 is lost than in case-Re24000 during the turbulence generation process.
Breeding for Biotic Stress Resistance in Pea
Authors: Rubiales Diego , Barilli Eleonora , Rispail Nicolas
Published: September 2023

Pea (Pisum sativum) stands out as one of the most significant and productive cool-season pulse crops cultivated worldwide. Dealing with biotic stresses remains a critical challenge in fully harnessing pea’s potential productivity. As such, dedicated research and developmental efforts are necessary to make use of omic resources and advanced breeding techniques. These approaches are crucial in facilitating the rapid and timely development of high-yielding varieties that can tolerate and resist multiple stresses. The availability of advanced genomic tools, such as comprehensive genetic maps and reliable DNA markers, holds immense promise for integrating resistance genes from diverse sources. This integration helps accelerate genetic gains in pea crops. This review provides an overview of recent accomplishments in the genetic and genomic resource development of peas. It also covers the inheritance of genes controlling various biotic stress responses, genes that control pathogenesis in disease-causing organisms, the mapping of genes/QTLs, as well as transcriptomic and proteomic advancements. By combining conventional and modern omics-enabled breeding strategies, genetic gains can be significantly enhanced.
The Evaluation of Carbon Farming Strategies in Organic Vegetable Cultivation
Authors: Avasiloaiei Dan Ioan , Calara Mariana , Brezeanu Petre Marian , Gruda Nazim S. , Brezeanu Creola
Published: September 2023

The urgent need to mitigate greenhouse gas (GHG) emissions has prompted the exploration of various strategies, including the adaptation of carbon farming practices, to achieve sustainability in agricultural systems. In this research, we assess the viability of carbon farming practices for organic vegetable growing in Europe. The study explores the potential benefits of these practices, including GHG emissions’ mitigation and improved soil health, biodiversity, and ecosystem services, while also acknowledging the need for further research to optimize implementation strategies and foster widespread adoption. However, the suitability and effectiveness of carbon farming practices in organic vegetable production systems remain uncertain. The analysis considers the measurement and estimation methods employed to assess changes in soil carbon stocks and the potential environmental and economic implications for farmers. Despite a substantial body of data demonstrating the sustainable attributes of carbon farming and its multifaceted advantages, a degree of hesitancy persists. Considering this, we propose undertaking a concise strengths, weaknesses, opportunities, and threats (SWOT) analysis to evaluate multiple aspects of carbon farming. The findings reveal that carbon farming practices can be viable and advantageous in organic vegetable production. Carbon farming practices, such as cover cropping, reduced tillage, compost application, and agroforestry, can significantly enhance the sustainability of organic farming systems. Implementing these practices can mitigate greenhouse gas emissions, improve soil health and fertility, and promote biodiversity conservation. Farmer education and support, policy measures, and continued research are crucial for maximizing the potential of these practices for a sustainable future. These practices also contribute to developing climate-friendly agricultural systems, promoting environmental resilience, and reducing the ecological footprint of organic vegetable production. However, further research is needed to optimize implementation strategies, address site-specific challenges, and foster widespread adoption of carbon farming practices in organic vegetable production.
Molecular Identification and Genotyping of Cryptosporidium spp. and Blastocystis sp. in Cattle in Representative Areas of Shanxi Province, North China
Authors: Liang Yao , Liu Ya-Ya , Mei Jin-Jin , Zheng Wen-Bin , Liu Qing , Gao Wen-Wei , Zhu Xing-Quan , Xie Shi-Chen
Published: September 2023

Both Cryptosporidium spp. and Blastocystis sp. are common intestinal protozoa, which can cause zoonotic diseases and economic losses to livestock industry. To evaluate the prevalence and genetic population structure of Cryptosporidium spp. and Blastocystis sp. in beef and dairy cattle in Shanxi Province, north China, a total of 795 fecal samples were collected from beef and dairy cattle in three representative counties in Shanxi Province, and these fecal samples were examined using molecular approaches based on 18S small-subunit ribosomal RNA (SSU rRNA) of Cryptosporidium spp. and Blastocystis sp., respectively. Among 795 cattle fecal samples, 23 were detected as Cryptosporidium-positive and 103 were detected as Blastocystis-positive, and the overall prevalence of Cryptosporidium spp. and Blastocystis sp. in cattle in Shanxi Province was 2.9% and 13.0%, respectively. For Cryptosporidium spp., DNA sequence analysis indicated that all 23 positive samples were identified as C. andersoni. Furthermore, five known subtypes (ST1, ST10, ST14, ST21 and ST26) and three unknown subtypes of Blastocystis sp. were detected among 103 positive samples using DNA sequence analysis. This study reported the occurrence and prevalence of Cryptosporidium spp. and Blastocystis sp. in cattle in Shanxi Province for the first time, which extends the geographical distribution of these two zoonotic parasites and provides baseline data for the prevention and control of these two important zoonotic parasites in cattle in Shanxi Province.
Cross-Sectional Anatomy and Computed Tomography of the Coelomic Cavity in Juvenile Atlantic Puffins (Aves, Alcidae, Fratercula arctica)
Authors: Jaber José Raduan , Fumero-Hernández Marcos , Corbera Juan Alberto , Morales Inmaculada , Amador Manuel , Ramírez Zarzosa Gregorio , Encinoso Mario
Published: September 2023

In birds, unlike mammals, there is no complete separation between the thoracic and abdominal cavities. Instead, they have the coelomic cavity where most main organs are found. Therefore, an adequate knowledge of the anatomy of the coelomic cavity is of great importance for veterinarians, biologists and the scientific community. This study aimed to evaluate the coelomic cavity anatomy in the Atlantic puffin (Fratercula arctica) using anatomical sections and computed tomography images.
The Supplementation of Docosahexaenoic Acid-Concentrated Fish Oil Enhances Cognitive Function in Puppies
Authors: Rodrigues Roberta Bueno Ayres , Zafalon Rafael Vessecchi Amorim , Rentas Mariana Fragoso , Risolia Larissa Wünsche , Macedo Henrique Tobaro , Perini Mariana Pamplona , Silva Amanda Maria Gomes da , Marchi Pedro Henrique , Balieiro Júlio César de Carvalho , Mendes Wandréa Souza , Vendramini Thiago Henrique Annibale , Brunetto Marcio Antonio
Published: September 2023

Docosahexaenoic acid (DHA) has an important role in brain development and functionality. Therefore, this study aimed to evaluate the effects of DHA-concentrated fish oil on the cognitive function of puppies. Twelve 3-month-old puppies were included, blocked by breed and randomly distributed into two groups: the Control Group (CG), without supplementation, and the Experimental Group (EG), supplemented with 40 mg DHA/kg BW/day. The object discrimination test was used, with a normal stage (NS) and a reverse stage (RS), and blood samples were collected to evaluate the serum polyunsaturated fatty acid (PUFA) concentration and total antioxidant capacity (TAC) before (T0) and 30 (T1), 60 (T2) and 90 (T3) days after beginning the study. For the NS, there were effects of treatment (p = 0.0039) and time (p < 0.0001), in which the correct answer frequency in the EG was higher than the CG. The serum eicosapentaenoic acid (EPA) + HA concentrations at T1, T2 and T3 were higher than at T0 for the EG (p = 0.0159), in addition, EG showed higher serum EPA + DHA concentrations than CG at T2 (p = 0.0245). The TAC values were similar between the groups (p = 0.3211). It was concluded that the cognitive function of puppies can be enhanced with DHA-concentrated fish oil supplementation without increasing the serum lipid oxidation.
Effects of a Sprinkler and Cool Cell Combined System on Cooling Water Usage, Litter Moisture, and Indoor Environment of Broiler Houses
Authors: Moon Jonathan , DuBien Jan , Ramachandran Reshma , Liang Yi , Dridi Sami , Tabler Tom
Published: September 2023

Climate change is a serious challenge to food production around the world. Sustainability and water efficiency are critical to a poultry industry faced with global production concerns including increased demands for high-quality, affordable animal protein and greater environmental pressures resulting from rising global temperatures, flock heat stress, and limits on water availability. To address these concerns, a commercial sprinkler system used in combination with a cool cell system was evaluated against a cool cell system alone for two summer flocks of heavy broilers at Mississippi State University to determine effects of sprinkler technology on cooling water usage, litter moisture, and in-house environments. Environmental data were calculated and recorded throughout the flocks. The combination house exhibited a 2.2 °C (4 °F) increase in daily maximum temperature, lower coincident relative humidity, and a 64% (62,039 L/flock) reduction in average cooling water usage over the cool cell-only house. Litter moisture for the combination house tended to be numerically lower but showed no significant difference at several time points between and across flocks. A combined sprinkler/cool cell system reduced cooling water use by 64% over two flocks compared to a cool cell alone system and decreased in-house relative humidity levels.
Hepatitis E Virus (HEV) in Heavy Pigs in Slaughterhouses of Northern Italy: Investigation of Seroprevalence, Viraemia, and Faecal Shedding
Authors: Monini Marina , Di Bartolo Ilaria , De Sabato Luca , Ianiro Giovanni , Agostinelli Francesca , Ostanello Fabio
Published: September 2023

Hepatitis E virus (HEV) is considered an emerging threat in Europe, owing to the increased number of human cases and the widespread presence of the virus in pigs at farms. Most cases in industrialized countries are caused by the zoonotic HEV-3 genotype. The main transmission route of HEV-3 in Europe is foodborne, through consumption of raw or undercooked liver pork and wild boar meat. Pigs become susceptible to HEV infection after the loss of maternal immunity, and the majority of adult pigs test positive for IgG anti-HEV antibodies. Nonetheless, HEV-infected pigs in terms of liver, faeces, and rarely blood are identified at slaughterhouses. The present study aimed to investigate the prevalence of HEV-positive batches of Italian heavy pigs at slaughterhouses, assessing the presence of animals still shedding HEV upon their arrival at the slaughterhouse by sampling faeces collected from the floor of the trucks used for their transport. The occurrence of viraemic animals and the seroprevalence of anti-HEV antibodies were also assessed. The results obtained indicated the presence of anti-HEV IgM (1.9%), and a high seroprevalence of anti-HEV total antibodies (IgG, IgM, IgA; 89.2%, n = 260). HEV RNA was not detected in either plasma or faecal samples. Nevertheless, seropositive animals were identified in all eight batches investigated, confirming the widespread exposure of pigs to HEV at both individual and farm levels. Future studies are needed to assess the factors associated with the risk of HEV presence on farms, with the aim to prevent virus introduction and spread within farms, thereby eliminating the risk at slaughterhouse.
Impact of Climate Change and Heat Stress on Milk Production in Korean Holstein Cows: A Large-Scale Data Analysis
Authors: Jeon Eunjeong , Jang Seungho , Yeo Joon-Mo , Kim Dong-Wook , Cho Kwanghyun
Published: September 2023

This study investigated the effects of heat stress on milk production in Korean Holstein cows using large-scale data. Heat stress was assessed using the temperature-humidity index (THI). Weather records (2016 to 2020) were collected from 70 regional weather stations using an installed automated surface observing system (ASOS). A dataset of 2,094,436 milk production records from 215,276 Holstein cows obtained from the Dairy Cattle Genetic Improvement Center was analyzed. Stepwise selection was used to select the input variables, including the daily maximum THI (THI_max). Least-squares means were calculated for milk yield, fat and protein corrected milk (FPCM), fat and protein yield, fat-to-protein ratio, solids not fat, and lactation persistency. Segmented linear regression analysis determined the break points (BPs) of the THI_max. Over the five years, heat stress exposure increased, particularly from May to September. This study identified BPs around THI_max of 80–82 for milk yield and FPCM. Similar patterns for other milk traits were observed, which significantly decreased beyond their respective BPs. These findings indicate that THI variations adversely affect milk yield and composition in dairy cows, highlighting the importance of appropriate feeding management strategies to ensure the optimal productivity of Holstein cows under varying climatic conditions.
Comparative Analysis of Porcine Adipose- and Wharton’s Jelly-Derived Mesenchymal Stem Cells
Authors: Kim Ga Yeon , Choi Gyu Tae , Park Jinryong , Lee Jeongeun , Do Jeong Tae
Published: September 2023

Mesenchymal stem cells (MSCs) are promising candidates for tissue regeneration, cell therapy, and cultured meat research owing to their ability to differentiate into various lineages including adipocytes, chondrocytes, and osteocytes. As MSCs display different characteristics depending on the tissue of origin, the appropriate cells need to be selected according to the purpose of the research. However, little is known of the unique properties of MSCs in pigs. In this study, we compared two types of porcine mesenchymal stem cells (MSCs) isolated from the dorsal subcutaneous adipose tissue (adipose-derived stem cells (ADSCs)) and Wharton’s jelly of the umbilical cord (Wharton’s jelly-derived mesenchymal stem cells (WJ-MSCs)) of 1-day-old piglets. The ADSCs displayed a higher proliferation rate and more efficient differentiation potential into adipogenic and chondrogenic lineages than that of WJ-MSCs; conversely, WJ-MSCs showed superior differentiation capacity towards osteogenic lineages. In early passages, ADSCs displayed higher proliferation rates and mitochondrial energy metabolism (measured based on the oxygen consumption rate) compared with that of WJ-MSCs, although these distinctions diminished in late passages. This study broadens our understanding of porcine MSCs and provides insights into their potential applications in animal clinics and cultured meat science.
Gut Fungal Communities Are Influenced by Seasonality in Captive Baikal Teal (Sibirionetta formosa) and Common Teal (Anas crecca)
Authors: Sakda Patthanan , Xiang Xingjia , Wu Yuannuo , Zhang Xinying , Xu Wenbin , Zhou Lizhi
Published: September 2023

Understanding the dynamics of avian gut fungal communities and potentially pathogenic species across different seasons is crucial for assessing their health and ecological interactions. In this study, high-throughput sequencing was employed to examine the changes in gut fungal communities and the presence of potential pathogens between different seasons in captive Baikal teal and common teal. Between the summer and autumn seasons, both duck species showed significant differences in fungal diversity and community composition. A higher fungal diversity in both species was exhibited in the summer than in the autumn. Ascomycota and Basidiomycota were the two most common phyla, with a greater proportion of Ascomycota than Basidiomycota in both duck species in the summer. Interestingly, our study also identified animal pathogens and plant saprotrophs in the gut fungal communities. Seasonal variation had an effect on the diversity and abundance of both animal pathogens and saprotrophs. Specifically, during the summer season, the diversity and relative abundance were higher compared to the autumn season. In addition, there were differences between duck species in terms of animal pathogens, while no significant differences were observed in saprotrophs. Overall, the communities of the gut fungi, animal pathogens, and saprotrophs were found to be influenced by seasonal changes rather than host species. Therefore, seasonal variations might dominate over host genetics in shaping the gut microbiota of captive Baikal teal and common teal. This study underscores the importance of incorporating an understanding of seasonal dynamics and potential pathogens within the gut microbiota of captive ducks. Such considerations have the potential to drive progress in the development of sustainable and economically viable farming practices.
The Functional Roles of Methionine and Arginine in Intestinal and Bone Health of Poultry: Review
Authors: Liu Guanchen , Kim Woo Kyun
Published: September 2023

This review explores the roles of methionine and arginine in promoting the well-being of poultry, with a specific focus on their impacts on intestinal and bone health. The metabolic pathways of methionine and arginine are elucidated, highlighting their distinct routes within the avian system. Beyond their fundamental importance in protein synthesis, methionine and arginine also exert their functional roles through their antioxidant capacities, immunomodulating effects, and involvement in the synthesis of metabolically important molecules such as S-adenosylmethionine, nitric oxide, and polyamines. These multifaceted actions enable methionine and arginine to influence various aspects of intestinal health such as maintaining the integrity of the intestinal barrier, regulating immune responses, and even influencing the composition of the gut microbiota. Additionally, they could play a pivotal role in promoting bone development and regulating bone remodeling, ultimately fostering optimal bone health. In conclusion, this review provides a comprehensive understanding of the potential roles of methionine and arginine in intestinal and bone health in poultry, thereby contributing to advancing the nutrition, overall health, and productivity of poultry in a sustainable manner.
β-Hydroxybutyrate Effects on Bovine Caruncular Epithelial Cells: A Model for Investigating the Peri-Implantation Period Disruption in Ketotic Dairy Cows
Authors: Hildebrand Carolin , Hollenbach Julia , Seeger Bettina , Pfarrer Christiane
Published: September 2023

Ketosis is a metabolic disorder arising from a negative energy balance (NEB). It is characterized by high β-Hydroxybutyrate (BHBA) blood levels and associated with reduced fertility in dairy cows. To investigate the impact of BHBA on bovine caruncular epithelial cells (BCEC) in vitro, these cells were stimulated with different concentrations of BHBA. Cell metabolism and motility were examined using an MTT assay and Live-cell imaging. RT-qPCR was used to examine mRNA expressions of TNF, IL6, RELA, prostaglandin E2 synthase (PTGES2) and receptor (PTGER2) as well as integrin subunits ITGAV, ITGA6, ITGB1 and ITGB3. Stimulation with 1.8 and 2.4 mM of BHBA negatively affected cell metabolism and motility. TNF showed increased mRNA expression related to rising BHBA concentrations. IL6, RELA, ITGAV, ITGA6, ITGB1 and ITGB3 as well as PTGER2 showed no changes in mRNA expression. Stimulation with 0.6 and 1.2 mM of BHBA significantly increased the mRNA expression of PTGES2. This does not indicate a negative effect on reproductive performance because low BHBA concentrations are found in steady-state conditions. However, the results of the study show negative effects of high BHBA concentrations on the function of BCECs as well as an inflammatory response. This could negatively affect the feto-maternal communication during the peri-implantation period in ketotic dairy cows.
Trace Amounts of Ranavirus Detected in Common Musk Turtles (Sternotherus odoratus) at a Site Where the Pathogen Was Previously Common
Authors: Goodman Rachel M. , Carman Henry R. , Mahaffy R. Paul , Cabrera Nathan S.
Published: September 2023

Ranaviruses are global multi-host pathogens that infect ectothermic vertebrates and cause mass mortality events in some species. In 2021–2022, we surveyed two species of aquatic turtles in a Virginia site where previous research found ranavirus in lizards (Sceloporus undulatus) and turtles (Chrysemys picta picta and Terrapene carolina carolina). We sampled tissues from 206 turtles and tested 249 samples (including recaptures) for ranavirus using qPCR. We detected trace amounts of ranavirus DNA in 2.8% of Common Musk Turtles (Sternotherus odoratus). We did not detect the virus in Eastern Painted Turtles (C. p. picta). The Ct values from animals carrying ranavirus corresponded to positive controls with a concentration of one copy of ranavirus DNA per microliter and likely reflect DNA in the environment rather than ranavirus infection in turtles. Turtles carrying ranavirus DNA came from only one pond in one year. The amount of ranavirus in our study site, as indicated by tissue samples from turtles, appears to have dropped dramatically since previous research conducted over a decade ago. This study represents the first report of ranavirus detected in S. odoratus and contributes to the scarce literature on longitudinal surveys of ranavirus in wild chelonians. We emphasize the need for large sample sizes and multi-year sampling to detect this pathogen in wild populations.
Evaluation of Molecular Simulations and Deep Learning Prediction of Antibodies’ Recognition of TRBC1 and TRBC2
Authors: Zeng Xincheng , Wang Tianqun , Kang Yue , Bai Ganggang , Ma Buyong
Published: September 2023

T cell receptor β-chain constant (TRBC) is a promising class of cancer targets consisting of two highly homologous proteins, TRBC1 and TRBC2. Developing targeted antibody therapeutics against TRBC1 or TRBC2 is expected to eradicate the malignant T cells and preserve half of the normal T cells. Recently, several antibody engineering strategies have been used to modulate the TRBC1 and TRBC2 specificity of antibodies. Here, we used molecular simulation and artificial intelligence methods to quantify the affinity difference in antibodies with various mutations for TRBC1 and TRBC2. The affinity of the existing mutants was verified by FEP calculations aided by the AI. We also performed long-time molecular dynamics simulations to reveal the dynamical antigen recognition mechanisms of the TRBC antibodies.