bluuebunny/crossref_metadata_2025 huggingface dataset:
Assessment of Efficacy and Mechanism of Resistance to Soil-Applied PPO Inhibitors in Amaranthus palmeri
Authors: Rangani Gulab , Porri Aimone , Salas-Perez Reiofeli A. , Lerchl Jens , Karaikal Srikanth Kumar , Velásquez Juan Camilo , Roma-Burgos Nilda
Published: February 2023

Resistance to protoporphyrinogen oxidase (PPO) inhibitors in Palmer amaranth is a major concern, given the high selection pressure and increasing number of populations with reduced sensitivity to PPO herbicides in the US. We evaluated the effect of five soil-applied herbicides on Palmer amaranth (Amaranthus palmeri S. Wats.) populations collected in 2014 and 2015 in Arkansas, USA. Soil-applied saflufenacil, sulfentrazone, and flumioxazin reduced the seedling emergence 91–100%; however, fomesafen and oxyfluorfen showed reduced (63–90%) efficacy on some populations. Target-site mutation (TSM) is the major mechanism of resistance to PPO herbicides; therefore, six populations showing resistance to soil-applied fomesafen were selected for molecular investigations. A total of 81 survivors were genotyped for all known resistance-conferring mutations. A total of 64% and 36% survivors had single and double TSMs, respectively, with 69% of plants carrying TSM in both alleles of PPO2. Three survivors from two populations showed an additional copy of PPO2, whereas all other survivors had one copy. Expression analysis showed 3- to 6-fold upregulation of PPO2 in all plants from resistant populations tested. Transgenic overexpression of WT-ApPPO2 and dG210-Apppo2 in A. thaliana confirmed the reduced sensitivity to soil-applied fomesafen compared to the wild type. Collectively, PPO inhibitors applied pre-emergence are still effective in controlling populations resistant to foliar-applied PPO herbicides. Mechanically, elevated expression of resistant PPO2, alongside functional TSM, contribute to reduced sensitivity to soil-applied fomesafen.
Mapping of Gynaephora alpherakii Inhabitability Area in the National Park of Qilian Mountain, China
Authors: Lv Yanyan , Zhang Jianguo , Chen Wei , Sun Yi , Li Meng , Yu Hongyan , Yi Shuhua , Meng Baoping
Published: February 2023

Gynaephora alpherakii (G. alpherakii) is one of the dominant pests in the alpine meadow; its outbreak has substantial impacts on grass vegetation production and carrying capacity. The increasing frequency of G. alpherakii outbreaks will take place with global warming and human activities. Therefore, it is crucial to identify inhabitable areas to apply prevention measures efficiently and facilitate sustainable grassland management. In this study, field measurements of G. alpherakii (from 2010 to 2021) were used to explore the relationships between its density and environmental factors in the National Park of Qilian Mountain, China. Then, the inhabitability area was mapped. The results showed that (1) eight of the twenty-five factors studied (average and maximum value of solar radiation; minimum, standard deviation, and average value of normalized difference vegetation index (NDVI); maximum precipitation; and digital elevation model) had a greater influence on G. alpherakii density. (2) Among all of the estimation models, models based on the average of solar radiation, the minimum of NDVI, and the maximum precipitation were better than other factors, with a higher determination coefficient (R2) of 0.53–0.66 and a lower root mean square error (RMSE) of 40.54–47.32 head/m2. Models based on rest factors had a lower accuracy, with R2 within 0.38–0.49 and an RMSE of 50.91–58.68 head/m2. (3) The inhabitable area which was most suited for G. alpherakii growth, development, and frequent outbreaks was located in the northeast of the research area (24.72%), with inhabitability decreasing from southeast to northwest. This method is helpful for clarifying the distribution regions and occurrence dynamics of the G. alpherakii in the alpine meadow. The spatial distribution of G. alpherakii in the National Park of Qilian Mountain can also be clearly defined by using this method, which can provide data support for its prevention and control.
Action of Different Exposures of Chilled Atmospheric Treatments on the Mortality of Granary Weevil and Embryo Viability of the Treated Wheat
Authors: Keszthelyi Sándor , Lukács Helga , Gibicsár Szilvia , Rolbiecki Roman , Pál-Fám Ferenc
Published: February 2023

The granary weevil, Sitophilus granarius (L.), is considered a serious pest in stored grain worldwide. As residual-based protection possibilities become scarcer, the development of eco-friendly control technologies that can be implemented in practice is becoming urgent. In this spirit, our objective was to assess the effectiveness of different levels of atmospheric cooling against S. granarius under laboratory conditions. We also analysed the effects of cooling on progeny generation and the viability of treated wheat. Thus, we investigated the consequences of atmospheric exposures to temperatures of −5, −10, −15, −20, and −25 °C for 60, 75, and 90 min on these factors, and also explored the effects of nearby ranges using extrapolation. The viability of the treated wheat embryo was analysed using a TTC test. Our results showed that the highest efficacy was observed at an atmospheric cooling temperature of −25 °C (with a parallel recorded temperature of −10.5 °C in the stored grains zone), with a 90 min exposure at suboptimal relative humidity (40%). At 60% relative humidity, the mortality averages were more dispersed, and the expected efficiencies above 95% occurred at longer exposures. The post-suppressive effect of cooling can be confirmed in all three exposures. The different cooling temperatures of the tested exposure times did not produce any appreciable changes in the viability of treated wheat embryos. In conclusion, our results show that the use of atmospheric cooling can be an effective solution for stored product protection.
The SP Theory of Intelligence, and Its Realisation in the SP Computer Model, as a Foundation for the Development of Artificial General Intelligence
Authors: Wolff J. Gerard
Published: February 2023

The theme of this paper is that the SP Theory of Intelligence (SPTI), and its realisation in the SP Computer Model, is a promising foundation for the development of artificial intelligence at the level of people or higher, also known as ‘artificial general intelligence’ (AGI). The SPTI, and alternatives to the SPTI chosen to be representative of potential foundations for the development of AGI, are considered and compared. A key principle in the SPTI and its development is the importance of information compression (IC) in human learning, perception, and cognition. More specifically, IC in the SPTI is achieved via the powerful concept of SP-multiple-alignment, the key to the versatility of the SPTI in diverse aspects of intelligence, and thus a favourable combination of Simplicity with descriptive and explanatory Power. Since there are many uncertainties between where we are now and, far into the future, anything that might qualify as an AGI, a multi-pronged attack on the problem is needed. The SPTI qualifies as the basis for one of those prongs. Although it will take time to achieve AGI, there is potential along the road for many useful benefits and applications of the research.
Smart Multimedia Information Retrieval
Authors: Wagenpfeil Stefan , Kevitt Paul Mc , Hemmje Matthias
Published: February 2023

The area of multimedia information retrieval (MMIR) faces two major challenges: the enormously growing number of multimedia objects (i.e., images, videos, audio, and text files), and the fast increasing level of detail of these objects (e.g., the number of pixels in images). Both challenges lead to a high demand of scalability, semantic representations, and explainability of MMIR processes. Smart MMIR solves these challenges by employing graph codes as an indexing structure, attaching semantic annotations for explainability, and employing application profiling for scaling, which results in human-understandable, expressive, and interoperable MMIR. The mathematical foundation, the modeling, implementation detail, and experimental results are shown in this paper, which confirm that Smart MMIR improves MMIR in the area of efficiency, effectiveness, and human understandability.
Evaluation of Physical Egg Quality Parameters of Commercial Brown Laying Hens Housed in Five Production Systems
Authors: Alig Benjamin N. , Malheiros Ramon D. , Anderson Kenneth E.
Published: February 2023

This study evaluates the effect of housing environment on the egg quality characteristics of brown egg layers as many different environments are currently used in the industry. Battery cages, barren colony cages, enriched colony cages, cage-free, and free-range environments were evaluated. Overall, all egg quality measurements were affected by housing environment (p < 0.01) except for vitelline membrane strength, elasticity, and egg solids. Eggshells and yolks were lightest in barren colony cages and darkest from free-range hens (p < 0.0001). Free-range eggs were heavier than eggs from all other environments (p < 0.0001). Cage-free eggs had lower albumen height and Haugh units than other environments (p < 0.0001). Lastly, cage-free and free-range eggs had stronger eggshells than the other environments (p < 0.0001), and free-range eggs had more elastic eggshells than eggs from conventional battery cages and barren colony cages (p < 0.01). Access to the range seemed to give free-range hens different nutritional advantages, which allowed for the darker yolks and shells. Furthermore, eggs from barren colony cages seemed to exhibit more negative characteristics. Simply adding enrichments to colony cages did not improve or detract from egg quality. From this research, it appears that, as the industry moves toward extensive environments, the egg quality of brown egg layers will improve.
Establishment and Application of an Indirect ELISA for the Detection of Antibodies to Porcine Streptococcus suis Based on a Recombinant GMD Protein
Authors: Dong Nihua , Wang Zhaofei , Sun Qing , Chen Xiaojun , Zhang Hailong , Zheng Jiayang , Zhang Xinya , Qiu Yafeng , Li Zongjie , Li Beibei , Liu Ke , Shao Donghua , Wei Jianchao , Sun Jianhe , Ma Zhiyong
Published: February 2023

S. suis is an important zoonotic pathogen from sick and recessive carrier pigs that poses a serious threat to animal husbandry production and public health. It usually causes horizontal transmission among pigs. The morbidity and mortality of this disease are very high. Human infection is caused through direct or indirect contact with sick pigs. The two large-scale outbreaks in China were due to the outbreak of S. suis on pig farms, which spread to human infection; thus, detecting S. suis in pig herds is crucial. At present, the commercial S. suis ELISA type 2 kits on the market can only detect single serotypes, high probabilities of interaction reactions, and biosafety risks when using inactivated S. suis as an antigen. Phosphate-3-glyceraldehyde dehydrogenase (GAPDH), muramidase-released protein (MRP), and dihydrolipoamide dehydrogenase (DLDH) are important S. suis type 2, S. suis type 7, and S. suis type 9 protective antigens. This study purified the GMD protein (B-cell-dominant epitopes of GAPDH, MRP, and DLDH antigens) and used a diverse combination of dominant epitopes of the multiple different antigens as coated antigens, improving the sensitivity and safety of the indirect ELISA experiments. An indirect ELISA method (GMD-ELISA) was developed for detecting S. suis antibodies. The antigen—antibody response was optimized using checkerboard titration. The results of testing using ELISA for Salmonella enterica (S. enterica), Escherichia coli (E. coli), Staphylococcus aureus (SA), and Streptococcus pyogenes (S. pyogenes) were all negative, indicating that this method had strong specificity. The results were still positive when the dilution ratio of S. suis-positive serum reached 1:6, 400, thus indicating that the method had high sensitivity. The results of the reproducibility assay for indirect ELISA showed that the intra-assay coefficient of variation and the inter-assay coefficient of variation were less than 10%, indicating that the method had good repeatability. We investigated the seroprevalence of S. suis in 167 serum samples collected in East China, and 33.5% of the samples were positive for antibodies against S. suis, indicating that the prevalence of S. suis is high in pig farms in Eastern China. The novel GMD-ELISA is a convenient, sensitive, and specific diagnostic method that provides technical support for rapid diagnosis and epidemiological investigation.
Utilizing Variants Identified with Multiple Genome-Wide Association Study Methods Optimizes Genomic Selection for Growth Traits in Pigs
Authors: Zhang Ruifeng , Zhang Yi , Liu Tongni , Jiang Bo , Li Zhenyang , Qu Youping , Chen Yaosheng , Li Zhengcao
Published: February 2023

Improving the prediction accuracies of economically important traits in genomic selection (GS) is a main objective for researchers and breeders in the livestock industry. This study aims at utilizing potentially functional SNPs and QTLs identified with various genome-wide association study (GWAS) models in GS of pig growth traits. We used three well-established GWAS methods, including the mixed linear model, Bayesian model and meta-analysis, as well as 60K SNP-chip and whole genome sequence (WGS) data from 1734 Yorkshire and 1123 Landrace pigs to detect SNPs related to four growth traits: average daily gain, backfat thickness, body weight and birth weight. A total of 1485 significant loci and 24 candidate genes which are involved in skeletal muscle development, fatty deposition, lipid metabolism and insulin resistance were identified. Compared with using all SNP-chip data, GS with the pre-selected functional SNPs in the standard genomic best linear unbiased prediction (GBLUP), and a two-kernel based GBLUP model yielded average gains in accuracy by 4 to 46% (from 0.19 ± 0.07 to 0.56 ± 0.07) and 5 to 27% (from 0.16 ± 0.06 to 0.57 ± 0.05) for the four traits, respectively, suggesting that the prioritization of preselected functional markers in GS models had the potential to improve prediction accuracies for certain traits in livestock breeding.
Variations of Supercooling Capacity in Intertidal Gastropods
Authors: Wang Jie , Wang Shuo
Published: February 2023

Winter low-temperature confines species distribution. Intertidal gastropods are distributed from tropical to polar zones, facing variable intensities and durations of low temperatures. They usually set their supercooling points (SCPs) at high subzero temperatures to stimulate freezing. However, the variations in SCP in intertidal gastropods at intraspecific and interspecific levels remain poorly understood. Here, we measured the body size, cooling rate, and SCP of nine intertidal gastropod species in China. These species were distributed in high or middle intertidal zone with different geographic distributions. The average SCPs (−4.27~−7.10 °C) and the coefficients of variation of SCP (22.6%~45.9%) were high in all species. At the intraspecific level, the supercooling capacity was positively correlated with the cooling rate. Interspecifically, the supercooling capacity was closely related to the cooling rate, and also to the species’ geographical distribution. Northern high-shore species showed lower SCPs, while southern high-shore species had higher SCPs. There was no difference in SCP between widespread high- and mid-shore species. Our results indicated that the supercooling capability is potentially an adaptative response to the local winter temperatures, and the cooling rate is a factor in determining the difference in SCP at the intraspecific and interspecific levels.
Overexpression of the QKI Gene Promotes Differentiation of Goat Myoblasts into Myotubes
Authors: Chen Sijia , Niu Shu , Wang Wannian , Zhao Xiang , Pan Yangyang , Qiao Liying , Yang Kaijie , Liu Jianhua , Liu Wenzhong
Published: February 2023

The QKI genes encode RNA-binding proteins regulating cell proliferation, differentiation, and apoptosis. The Goat QKI has six isoforms, but their roles in myogenesis are unclear. In this study, the six isoforms of the QKI gene were overexpressed in goat myoblast. Immunofluorescence, qPCR and Western blot were used to evaluate the effect of QKI on the differentiation of goat myoblast. An RNA-Seq was performed on the cells with the gain of the function from the major isoforms to screen differentially expressed genes (DEGs). The results show that six isoforms had different degrees of deletion in exons 6 and 7, and caused the appearance of different types of encoded amino acids. The expression levels of the QKI-1 and QKI-5 groups were upregulated in the biceps femoris and latissimus dorsi muscle tissues compared with those of the QKI-4, QKI-7, QKI-3 and QKI-6 groups. After 6 d of myoblast differentiation, QKI-5 and the myogenic differentiators MyoG, MyoD, and MyHC were upregulated. Compared to the negative control group, QKI promoted myotube differentiation and the myoblasts overexpressing QKI-5 formed large, abundant myotubes. In summary, we identified that the overexpression of the QKI gene promotes goat-myoblast differentiation and that QKI-5 is the major isoform, with a key role. The RNA-Seq screened 76 upregulated and 123 downregulated DEGs between the negative control and the QKI-5-overexpressing goat myoblasts after d 6 of differentiation. The GO and KEGG analyses associated the downregulated DEGs with muscle-related biological functions. Only the pathways related to muscle growth and development were enriched. This study provides a theoretical basis for further exploring the regulatory mechanism of QKI in skeletal-muscle development in goats.
Characteristics of Microbiota in Different Segments of the Digestive Tract of Lycodon rufozonatus
Authors: Shang Yongquan , Zhong Huaming , Liu Gang , Wang Xibao , Wu Xiaoyang , Wei Qinguo , Shi Lupeng , Zhang Honghai
Published: February 2023

The gastrointestinal tract of animals contains microbiota, forming a complex microecosystem. Gut microbes and their metabolites can regulate the development of host innate and adaptive immune systems. Animal immune systems maintain intestinal symbiotic microbiota homeostasis. However, relatively few studies have been published on reptiles, particularly snakes, and even fewer studies on different parts of the digestive tracts of these animals. Herein, we used 16S rRNA gene sequencing to investigate the microbial community composition and adaptability in the stomach and small and large intestines of Lycodon rufozonatus. Proteobacteria, Bacteroidetes, and Firmicutes were most abundant in the stomach; Fusobacteria in the small intestine; and Proteobacteria, Bacteroidetes, Fusobacteria, and Firmicutes in the large intestine. No dominant genus could be identified in the stomach; however, dominant genera were evident in the small and large intestines. The microbial diversity index was significantly higher in the stomach than in the small and large intestines. Moreover, the influence of the microbial community structure on function was clarified through function prediction. Collectively, the gut microbes in the different segments of the digestive tract revealed the unique features of the L. rufozonatus gut microbiome. Our results provide insights into the co-evolutionary relationship between reptile gut microbiota and their hosts.
Individual Responses of Captive Amazon Parrots to Routine Handling Can Reflect Their Temperament
Authors: Ramos Gabriela , Vital Victor Araújo Franzone , Jardim Talys Henrique Assumpção , Nunes Gustavo , Branco Maria Eduarda Caçador , de Azevedo Cristiano Schetini , Sant’Anna Aline Cristina
Published: February 2023

Individual responses to physical restraint and temperament have been assessed in birds of several species; however, there is a paucity of research which investigates both aspects, especially in captive parrots. This lack of studies raises doubts about which temperament traits, if any, are evidenced during handling and if the intensity of responses to restraint is affected by behavioral training programs, a common practice used in ex situ conservation programs. To understand more about the subject, this study aimed to identify the main temperament dimensions of parrots and investigate their relationship with response to physical restraint for blood collection. A secondary aim was to evaluate whether parrots exhibited higher responsiveness to physical restraint after training to improve flight capacity and increase aversion to humans. The main dimensions identified were activity, neophilia, vigilance, and fearfulness. The more fearful parrots in temperament evaluations were more responsive to physical restraint, showing more vocalizations and struggle attempts than the less fearful ones. After training, the parrots showed higher responsiveness to physical restraint. We suggest that physical restraint for routine handling, such as blood collection, could be a feasible option for centers of rehabilitation to use to obtain data on individual behavioral differences in fear responses.
Immunohistochemical and Physiological Research on Farm Animals
Authors: Scocco Paola , De Felice Elena , Malfatti Alessandro
Published: February 2023

This Special Issue “Immunohistochemical and Physiological Research on Farm Animals” is dedicated to the application of immunohistochemical and physiological studies carried out on farm animals, including traditional (pig, cow, buffalo, horse, sheep, goat, rabbit, turkey and trout) and emerging farm species (yak, sea bass and zebrafish) [...]
Effect of Spirulina Dietary Supplementation in Modifying the Rumen Microbiota of Ewes
Authors: Christodoulou Christos , Mavrommatis Alexandros , Loukovitis Dimitris , Symeon George , Dotas Vassilios , Kotsampasi Basiliki , Tsiplakou Eleni
Published: February 2023

Supplementing ruminant diets with microalgae, may prove an effective nutritional strategy to manipulate rumen microbiota. Forty-eight ewes were divided into four homogenous groups (n = 12) according to their fat-corrected milk yield (6%), body weight, age, and days in milk, and were fed individually with concentrate, alfalfa hay, and wheat straw. The concentrate of the control group (CON) had no Spirulina supplementation, while in the treated groups 5 (SP5), 10 (SP10), and 15 g (SP15) of Spirulina were supplemented as an additive in the concentrate. An initial screening using metagenomic next-generation sequencing technology was followed by RT-qPCR analysis for the targeting of specific microbes, which unveiled the main alterations of the rumen microbiota under the Spirulina supplementation levels. The relative abundance of Eubacterium ruminantium and Fibrobacter succinogenes in rumen fluid, as well as Ruminococcus albus in rumen solid fraction, were significantly increased in the SP15 group. Furthermore, the relative abundance of Prevotella brevis was significantly increased in the rumen fluid of the SP5 and SP10 groups. In contrast, the relative abundance of Ruminobacter amylophilus was significantly decreased in the rumen fluid of the SP10 compared to the CON group, while in the solid fraction it was significantly decreased in the SP groups. Moreover, the relative abundance of Selenomonas ruminantium was significantly decreased in the SP5 and SP15 groups, while the relative abundance of Streptococcus bovis was significantly decreased in the SP groups. Consequently, supplementing 15 g Spirulina/ewe/day increased the relative abundance of key cellulolytic species in the rumen, while amylolytic species were reduced only in the solid fraction.
Metabolomic Analysis of Multiple Biological Specimens (Feces, Serum, and Urine) by 1H-NMR Spectroscopy from Dairy Cows with Clinical Mastitis
Authors: Zhu Chenglin , Zhang Qian , Zhao Xin , Yang Zhibo , Yang Falong , Yang Yang , Tang Junni , Laghi Luca
Published: February 2023

Due to huge economic losses to the dairy industry worldwide, mastitis can be considered as one of the most common diseases in dairy cows. This work aimed to study this disease by comparing multiple biological specimens (feces, serum, and urine) from individuals with or without clinical mastitis. This was performed by a single analytical platform, namely 1H-NMR, through a multi-matrix strategy. Thanks to the high reproducibility of 1H-NMR, we could characterize 120 molecules across dairy cow feces, serum, and urine. Among them, 23 molecules were in common across the three biofluids. By integrating the results of multi-matrix metabolomics, several pathways pertaining to energy metabolism and amino acid metabolism appeared to be affected by clinical mastitis. The present work wished to deepen the understanding of dairy cow mastitis in its clinical form. Simultaneous analysis of metabolome changes across several key biofluids could facilitate knowledge discovery and the reliable identification of potential biomarkers, which could be, in turn, used to shed light on the early diagnosis of dairy cow mastitis in its subclinical form.
Antioxidant, Immunostimulant, and Growth-Promoting Effects of Dietary Annona squamosa Leaf Extract on Nile Tilapia, Oreochromis niloticus, and Its Tolerance to Thermal Stress and Aeromonas sobria Infection
Authors: Almarri Salem Hamad , Khalil Alshimaa A. , Mansour Abdallah Tageldein , El-Houseiny Walaa
Published: February 2023

Plant extracts are a phytochemically-rich alternative to antibiotic and synthetic feed additives, with high systemic bioactivity in animals. The present study aimed to evaluate the effect of a hydroalcoholic extract of custard apple (Annona squamosa) leaf (ASLE) on the growth, hematobiochemical parameters, digestive enzyme activities, redox status, nonspecific immune response, and cold and bacterial infection tolerance in Nile tilapia (Oreochromis niloticus). A total of 300 Nile tilapia fingerlings (11.87 ± 0.48 g) were fed ASLE-supplemented diets at increasing levels of 0, 5, 10, 15, and 20 g/kg for 60 days. At the end of the feeding period, the fish were experimentally challenged with cold water stress or Aeromonas sobria, and mortalities were recorded for 10 days. The results revealed that the growth performance and feed conversion ratio were significantly improved with an increasing level of ASLE supplementation. The hematologic profile and hepato-renal functions were retained within a healthy range in the various groups supplemented with an ASLE diet. Antioxidant status was significantly improved in the serum of fish fed ASLE-supplemented diets, in terms of superoxide dismutase (SOD), catalase (CAT) activities, reduced glutathione, and total antioxidant capacity. Meanwhile, the myeloperoxidase (MPO) and malondialdehyde (MDA) levels decreased significantly. Similarly, there was a noticeable improvement in the hepatic CAT and SOD activities and a reduction of hepatic MDA. Marked improvements in lysozyme activity, nitric oxide production, complement3 level, and phagocytic activity were recorded in groups fed ASLE-supplemented diets, which peaked with the 20 g ASLE/kg diet. Moreover, the serum glucose and cortisol levels significantly declined in groups fed ASLE at levels of 15–20 g/kg compared to the other groups. Supplementation with ASLE increased the activities of protease, lipase, and α-amylase. ASLE supplementation at a concentration of 10–20 g/kg diet enhanced the resistance of Nile tilapia to A. sobria infection. According to this study, ASLE supplementation enhanced the antioxidant balance, non-specific immune response, physiological status, resistance against infection, and growth performance of Nile tilapia at supplementation levels of 10–20 g/kg diet.
Effects of Dietary Sodium and Chloride on Slaughter Performance, Digestive Tract Development and Tibia Mineralization of Geese
Authors: Chen Yuanjing , Wang Zhiyue , Yang Haiming
Published: February 2023

This study evaluated the slaughter performance, digestive tract development and tibia mineralization effects of sodium (Na) and chloride (Cl) on geese. Four hundred and thirty-four male geese at 29 days were randomly assigned into nine groups with six replicates (eight in each). The experiment employed a 3 × 3 factorial design, with two instances each of three Na levels (0.10%, 0.15%, and 0.20%) and three Cl levels (0.15%, 0.20%, and 0.25%). All experimental birds were husbanded for 42 days. Dietary Na and Cl levels and their interactions (Na ×Cl) had no significant effect on the slaughter, breast, thigh, abdominal fat yield, and digestive tract index of geese (p > 0.05). However, dietary Na and Cl level significantly affected the crypt depth of the jejunum and tibial development. Variations in Na and Cl levels had a significant interaction on the crypt depth of jejunal (p < 0.05), 0.20% Na × 0.25% Cl had a minor crypt depth. Dietary variations in Na and Cl significantly affected the tibial strength, and there was a significant interaction between them (p < 0.05). When Na and Cl were at their maximum (0.20% Na and 0.25% Cl), the strength of the tibia was the lowest. In addition, a single factor (Na or Cl) had no effect (p > 0.05), but its interaction significantly affected the calcium (Ca) content of bone (p < 0.05). When the Na and Cl levels were 0.15% and 0.15%, respectively, the Ca content in bone was the highest. These results suggest that dietary Na and Cl had interactive effects on geese, especially in the development of the tibia. High dietary Na and Cl levels adversely influenced the tibia and intestinal crypt morphology. Therefore, we do not advocate supplementing too much Na or Cl in the diet. Combined with our previous results, for 29–70-day-old geese, it is recommended that dietary Na and Cl levels should be 0.10% and 0.15%, respectively.
Genome-Wide Genetic Structure of Henan Indigenous Chicken Breeds
Authors: Zhi Yihao , Wang Dandan , Zhang Ke , Wang Yangyang , Geng Wanzhuo , Chen Botong , Li Hong , Li Zhuanjian , Tian Yadong , Kang Xiangtao , Liu Xiaojun
Published: February 2023

There are five indigenous chicken breeds in Henan Province, China. These breeds have their own unique phenotypic characteristics in terms of morphology, behavior, skin and feather color, and productive performance, but their genetic basis is not well understood. Therefore, we analyzed the genetic structure, genomic diversity, and migration history of Henan indigenous chicken populations and the selection signals and genes responsible for Henan gamecock unique phenotypes using whole genome resequencing. The results indicate that Henan native chickens clustered most closely with the chicken populations in neighboring provinces. Compared to other breeds, Henan gamecock’s inbreeding and selection intensity were more stringent. TreeMix analysis revealed the gene flow from southern chicken breeds into the Zhengyang sanhuang chicken and from the Xichuan black-bone chicken into the Gushi chicken. Selective sweep analysis identified several genes and biological processes/pathways that were related to body size, head control, muscle development, reproduction, and aggression control. Additionally, we confirmed the association between genotypes of SNPs in the strong selective gene LCORL and body size and muscle development in the Gushi-Anka F2 resource population. These findings made it easier to understand the traits of the germplasm and the potential for using the Henan indigenous chicken.
Investigation of α,ω-Disubstituted Polyamine-Cholic Acid Conjugates Identifies Hyodeoxycholic and Chenodeoxycholic Scaffolds as Non-Toxic, Potent Antimicrobials
Authors: Sue Kenneth , Cadelis Melissa M. , Troia Thomas , Rouvier Florent , Bourguet-Kondracki Marie-Lise , Brunel Jean Michel , Copp Brent R.
Published: February 2023

With the increased incidence of antibiotic resistance, the discovery and development of new antibacterials is of increasing importance and urgency. The report of the natural product antibiotic squalamine in 1993 has stimulated a lot of interest in the study of structurally simplified cholic acid-polyamine derivatives. We report the synthesis of a focused set of deoxycholic acid-polyamine conjugates and the identification of hyodeoxycholic acid derivatives as being potently active towards S. aureus MRSA and some fungal strains, but with no attendant cytotoxicity or hemolytic properties. Analogue 7e exhibited bactericidal activity towards a range of Gram-positive bacteria, while preliminary investigation of its mechanism of action ruled out the bacterial membrane as being a primary cellular target as determined using an ATP-release bioluminescence assay.
A Novel Strategy for the Design of Aurein 1.2 Analogs with Enhanced Bioactivities by Conjunction of Cell-Penetrating Regions
Authors: Liao Fengting , Chen Yuping , Shu Anmei , Chen Xiaoling , Wang Tao , Jiang Yangyang , Ma Chengbang , Zhou Mei , Chen Tianbao , Shaw Chris , Wang Lei
Published: February 2023

The rational design modification of membrane-active peptide structures by introducing additional membrane-penetrating regions has become a good strategy for the improvement of action and potency. Aurein 1.2 (GLFDIIKKIAESF-NH2) is a multifunctional antimicrobial peptide isolated from the green and golden bell frog, Litoria aurea, and the southern bell frog Litoria raniformis skin secretions. Its bio-functionality has been widely investigated. However, its lack of a potent action failed to provide aurein 1.2 with a competitive edge for further development as a therapeutic agent for clinical use. Herein, aurein 1.2 was chosen as a template for rational modification to achieve a more potent bio-functionality. KLA-2 (GLFDIIKKLAKLAESF-NH2), which a double KLA region inserted into the sequence, presented a 2–16-fold enhancement of antimicrobial activity, a 2–8-fold greater anti-biofilm activity (including biofilm prevention and eradication), and a 7-fold more potent anti-proliferation activity and hence was regarded as the most broad-spectrum active peptide. Additionally, with respect to antimicrobial activity, the IIKK-modified analog, IK-3 (GLFDIIKKIIKKIIKKI-NH2), also demonstrated a potent enhancement of activity against various pathogens, exhibiting a 2–8-fold enhanced activity compared to the parent peptide. Moreover, the selectivities of KLA-1 and KLA-2 were enhanced significantly. In conclusion, peptide modification, through the introduction of additional membrane penetrating regions, can increase both the potency and activity spectra of natural template peptides, making them suitable candidates for new drug development.
Transcriptomic Responses to Polymyxin B and Analogues in Human Kidney Tubular Cells
Authors: Li Mengyao , Azad Mohammad A. K. , Thompson Philip E. , Roberts Kade D. , Velkov Tony , Zhu Yan , Li Jian
Published: February 2023

Polymyxins are last-line antibiotics for the treatment of Gram-negative ‘superbugs’. However, nephrotoxicity can occur in up to 60% of patients administered intravenous polymyxins. The mechanisms underpinning nephrotoxicity remain unclear. To understand polymyxin-induced nephrotoxicity, human renal proximal tubule cells were treated for 24 h with 0.1 mM polymyxin B or two new analogues, FADDI-251 or FADDI-287. Transcriptomic analysis was performed, and differentially expressed genes (DEGs) were identified using ANOVA (FDR < 0.2). Cell viability following treatment with polymyxin B, FADDI-251 or FADDI-287 was 66.0 ± 5.33%, 89.3 ± 3.96% and 90.4 ± 1.18%, respectively. Transcriptomics identified 430, 193 and 150 DEGs with polymyxin B, FADDI-251 and FADDI-287, respectively. Genes involved with metallothioneins and Toll-like receptor pathways were significantly perturbed by all polymyxins. Only polymyxin B induced perturbations in signal transduction, including FGFR2 and MAPK signaling. SIGNOR network analysis showed all treatments affected essential regulators in the immune system, autophagy, cell cycle, oxidative stress and apoptosis. All polymyxins caused significant perturbations of metal homeostasis and TLR signaling, while polymyxin B caused the most dramatic perturbations of the transcriptome. This study reveals the impact of polymyxin structure modifications on transcriptomic responses in human renal tubular cells and provides important information for designing safer new-generation polymyxins.
Quinolone Resistance Genes and Their Contribution to Resistance in Vibrio cholerae Serogroup O139
Authors: Zhou Yan-Yan , Ma Li-Yan , Yu Li , Lu Xin , Liang Wei-Li , Kan Biao , Su Jian-Rong
Published: February 2023

Background. Quinolones are commonly used for reducing the duration of diarrhea, infection severity, and limiting further transmission of disease related to Vibrio cholerae, but V. cholerae susceptibility to quinolone decreases over time. In addition to mutations in the quinolone-resistance determining regions (QRDRs), the presence of qnr and other acquired genes also contributes to quinolone resistance. Results. We determined the prevalence of quinolone resistance related genes among V. cholerae O139 strains isolated in China. We determined that eight strains carried qnrVC, which encodes a pentapeptide repeat protein of the Qnr subfamily, the members of which protect topoisomerases from quinolone action. Four qnrVC alleles were detected: qnrVC1, qnrVC5, qnrVC12, and qnrVC9. However, the strains carrying qnrVC1, qnrVC5, and qnrVC12 were ciprofloxacin (CIP)-sensitive. Contrastingly, the strain carrying qnrVC9 demonstrated high CIP resistance. qnrVC9 was carried by a small plasmid, which was conjugative and contributed to the high CIP resistance to the receptor V. cholerae strain. The same plasmid was also detected in V. vulnificus. The qnrVC1, qnrVC5, and qnrVC12 were cloned into expression plasmids and conferred CIP resistance on the host V. cholerae O139 strain. Conclusions. Our results revealed the contribution of quinolone resistance mediated by the qnrVC9 carried on the small plasmid and its active horizontal transfer among Vibrio species. The results also suggested the different effects of qnrVC alleles in different V. cholerae strains, which is possibly due to differences in sequences of qnrVC alleles and even the genetic characteristics of the host strains.
Bacteriophage Therapy as an Application for Bacterial Infection in China
Authors: Liang Shuang , Qi Yanling , Yu Huabo , Sun Wuwen , Raza Sayed Haidar Abbas , Alkhorayef Nada , Alkhalil Samia S. , Salama Essam Eldin Abdelhady , Zhang Lei
Published: February 2023

Antibiotic resistance has emerged as a significant issue to be resolved around the world. Bacteriophage (phage), in contrast to antibiotics, can only kill the target bacteria with no adverse effect on the normal bacterial flora. In this review, we described the biological characteristics of phage, and summarized the phage application in China, including in mammals, ovipara, aquatilia, and human clinical treatment. The data showed that phage had a good therapeutic effect on drug-resistant bacteria in veterinary fields, as well as in the clinical treatment of humans. However, we need to take more consideration of the narrow lysis spectrum, the immune response, the issues of storage, and the pharmacokinetics of phages. Due to the particularity of bacteriophage as a bacterial virus, there is no unified standard or regulation for the use of bacteriophage in the world at present, which hinders the application of bacteriophage as a substitute for antibiotic biological products. We aimed to highlight the rapidly advancing field of phage therapy as well as the challenges that China faces in reducing its reliance on antibiotics.
Anti-Hypertensive Property of an NO Nanoparticle in an Adenine-Induced Chronic Kidney Disease Young Rat Model
Authors: Tain You-Lin , Yang Hung-Wei , Hou Chih-Yao , Chang-Chien Guo-Ping , Lin Sufan , Hsu Chien-Ning
Published: February 2023

Hypertension is the most common complication of chronic kidney disease (CKD) in children but is still poorly controlled. Nitric oxide (NO) deficiency plays a pivotal role in CKD and hypertension. NO is known to have health benefits, while NO typically has a short half-life and is not specifically targeted. In this study, we used a pediatric CKD model, which was induced in young rats by feeding them 0.25% adenine. We investigated two different NO donors, namely S-nitrosoglutathione (GSNO) and diethylenetriamine/NO adduct (DETA NONOate) via intraperitoneal injection at 10 mg/kg/day daily for 3 weeks. GSNO was delivered by Cu2+-doped zeolitic imidazolate framework (Cu/ZIF-8) nanoparticles to generate NO. As a result, we observed Cu/ZIF-8 nanoparticles were successfully loaded with GSNO and were able to release NO. Young rats fed with adenine displayed kidney dysfunction and hypertension at 9 weeks of age, which were prevented by GSNO-loaded nanoparticle or DETA NONOate treatment. GSNO-loaded nanoparticles reduced CKD-induced hypertension, which was related to an enhanced endogenous NO-generating system, reduced renal oxidative stress, and downregulated several components belonging to the classic renin–angiotensin (RAS) system. Our results cast new light on targeting NO delivery through the use of nanoparticles aiming to improve child-focused outcomes related to CKD worthy of clinical translation.
Oxidative Stress and Antioxidants in Neurodegenerative Disorders
Authors: Olufunmilayo Edward O. , Gerke-Duncan Michelle B. , Holsinger R. M. Damian
Published: February 2023

Neurodegenerative disorders constitute a substantial proportion of neurological diseases with significant public health importance. The pathophysiology of neurodegenerative diseases is characterized by a complex interplay of various general and disease-specific factors that lead to the end point of neuronal degeneration and loss, and the eventual clinical manifestations. Oxidative stress is the result of an imbalance between pro-oxidant species and antioxidant systems, characterized by an elevation in the levels of reactive oxygen and reactive nitrogen species, and a reduction in the levels of endogenous antioxidants. Recent studies have increasingly highlighted oxidative stress and associated mitochondrial dysfunction to be important players in the pathophysiologic processes involved in neurodegenerative conditions. In this article, we review the current knowledge of the general effects of oxidative stress on the central nervous system, the different specific routes by which oxidative stress influences the pathophysiologic processes involved in Alzheimer’s disease, Parkinson’s disease, Amyotrophic Lateral Sclerosis and Huntington’s disease, and how oxidative stress may be therapeutically reversed/mitigated in order to stall the pathological progression of these neurodegenerative disorders to bring about clinical benefits.
Mitochondrial Open Reading Frame of the 12S rRNA Type-c: Potential Therapeutic Candidate in Retinal Diseases
Authors: Mohtashami Zahra , Singh Mithalesh Kumar , Neto Farid Thomaz , Salimiaghdam Nasim , Hasanpour Hossein , Kenney M. Cristina
Published: February 2023

Mitochondrial open reading frame of the 12S rRNA type-c (MOTS-c) is the most unearthed peptide encoded by mitochondrial DNA (mtDNA). It is an important regulator of the nuclear genome during times of stress because it promotes an adaptive stress response to maintain cellular homeostasis. Identifying MOTS-c specific binding partners may aid in deciphering the complex web of mitochondrial and nuclear-encoded signals. Mitochondrial damage and dysfunction have been linked to aging and the accelerated cell death associated with many types of retinal degenerations. Furthermore, research on MOTS-c ability to revive oxidatively stressed RPE cells has revealed a significant protective role for the molecule. Evidence suggests that senescent cells play a role in the development of age-related retinal disorders. This review examines the links between MOTS-c, mitochondria, and age-related diseases of the retina. Moreover, the untapped potential of MOTS-c as a treatment for glaucoma, diabetic retinopathy, and age-related macular degeneration is reviewed.
Cytoprotective and Antioxidant Effects of Hydrolysates from Black Soldier Fly (Hermetia illucens)
Authors: Riolo Kristian , Rotondo Archimede , La Torre Giovanna Loredana , Marino Ylenia , Franco Gianluca Antonio , Crupi Rosalia , Fusco Roberta , Di Paola Rosanna , Oliva Sabrina , De Marco Giuseppe , Savastano Domenico , Cuzzocrea Salvatore , Gugliandolo Enrico , Giannetto Alessia
Published: February 2023

The black soldier fly (BSF), Hermetia illucens, has been recognized as one of the most promising insect species for its ability to valorize organic waste while producing a valuable larval biomass with a great potential as a sustainable source of nutrients, including proteins and bioactive molecules. In the present study, BSF larvae were used to produce and characterize the protein hydrolysates (BPHs) that were then evaluated for their potential biological activity in vitro. The BPHs obtained from the BSF larvae proteins by enzymatic digestion were characterized by Nuclear Magnetic Resonance (NMR) and polyacrylamide gel electrophoresis and assessed for their antioxidant activity (BPHs in the range of 0.1 to 1.5 mg/mL) in L-929 cells. Our findings show that BPHs can exert a dose-dependent cytoprotective role against H2O2-iduced oxidative stress in cells. This antioxidant activity relies on the reduction of ROS levels in challenged cells as measured by flow cytometry and fluorescence microscopy, together with the induction and nuclear translocation of Nrf2, as evaluated by qPCR and indirect immunofluorescence analysis, respectively. Overall, our findings on the remarkable biological activity of the BPHs obtained in a large-scale process strongly suggest the application of BPHs as ingredients promoting animal health in feed formulations.
In Vitro Antiglycation Potential of Erva-Baleeira (Varronia curassavica Jacq.)
Authors: Rodrigues Winner Duque , Cardoso Felipe Nunes , Baviera Amanda Martins , dos Santos André Gonzaga
Published: February 2023

Background: Varronia curassavica Jacq. (Boraginaceae) is traditionally used in the treatment of inflammatory processes. The ethanolic extract of its leaves (EEVc) showed anti-inflammatory properties and low toxicity. Medicinal plants have aroused interest for their antiglycation activities. The formation and accumulation of advanced glycation end products (AGEs) are associated with several chronic diseases. The objective of this study was to evaluate the antiglycation potential of EEVc and two isolated compounds. Methods: The compounds brickellin and cordialin A were obtained by chromatographic methods and identified by spectrometric techniques. Analysis of fluorescent AGEs, biomarkers of amino acid residue oxidation, protein carbonyl groups and crosslink formation were performed in samples obtained from an in vitro model system of protein glycation with methylglyoxal. Results: EEVc, brickellin and cordialin A significantly reduced the in vitro formation of AGEs, and reduced the damage caused by oxidative damage to the protein. Conclusions: According to the results, EEVc, brickellin and cordialin A are potential candidates against AGEs formation, which opens the way to expand the therapeutic arsenal for many pathologies resulting from glycoxidative stress.