bluuebunny/crossref_metadata_2025 huggingface dataset:
An Insight into Microbial Inoculants for Bioconversion of Waste Biomass into Sustainable “Bio-Organic” Fertilizers: A Bibliometric Analysis and Systematic Literature Review
Authors: Kiruba N Jennifer Michellin , Saeid Agnieszka
Published: October 2022

The plant-microbe holobiont has garnered considerable attention in recent years, highlighting its importance as an ecological unit. Similarly, manipulation of the microbial entities involved in the rhizospheric microbiome for sustainable agriculture has also been in the limelight, generating several commercial bioformulations to enhance crop yield and pest resistance. These bioformulations were termed biofertilizers, with the consistent existence and evolution of different types. However, an emerging area of interest has recently focused on the application of these microorganisms for waste valorization and the production of “bio-organic” fertilizers as a result. In this study, we performed a bibliometric analysis and systematic review of the literature retrieved from Scopus and Web of Science to determine the type of microbial inoculants used for the bioconversion of waste into “bio-organic” fertilizers. The Bacillus, Acidothiobacillus species, cyanobacterial biomass species, Aspergillus sp. and Trichoderma sp. were identified to be consistently used for the recovery of nutrients and bioconversion of wastes used for the promotion of plant growth. Cyanobacterial strains were used predominantly for wastewater treatment, while Bacillus, Acidothiobacillus, and Aspergillus were used on a wide variety of wastes such as sawdust, agricultural waste, poultry bone meal, crustacean shell waste, food waste, and wastewater treatment plant (WWTP) sewage sludge ash. Several bioconversion strategies were observed such as submerged fermentation, solid-state fermentation, aerobic composting, granulation with microbiological activation, and biodegradation. Diverse groups of microorganisms (bacteria and fungi) with different enzymatic functionalities such as chitinolysis, lignocellulolytic, and proteolysis, in addition to their plant growth promoting properties being explored as a consortium for application as an inoculum waste bioconversion to fertilizers. Combining the efficiency of such functional and compatible microbial species for efficient bioconversion as well as higher plant growth and crop yield is an enticing opportunity for “bio-organic” fertilizer research.
The Perfusion Index of the Ear as a Predictor of Hypotension Following the Induction of Anesthesia in Patients with Hypertension: A Prospective Observational Study
Authors: Min Ji Young , Chang Hyun Jae , Chu Su Jung , Chung Mee Young
Published: October 2022

Patients with hypertension develop hemodynamic instability more frequently during anesthesia—particularly post-induction. Therefore, different monitoring methods may be required in patients with hypertension. Perfusion index—the ratio of the pulsatile blood flow to the non-pulsatile static blood flow in a patient’s peripheral tissues, such as the fingers or ears—can show the hemodynamic status of the patient in a non-invasive way. Among the sites used for measuring the perfusion index, it is assumed that the ear is more reliable than the finger for hemodynamic monitoring, because proximity to the brain ensures appropriate perfusion. We hypothesized that the low value of preoperative ear PI could be a predictor of post-induction hypotension in patients with hypertension. Thirty patients with hypertension were enrolled. The perfusion index and pleth variability index were measured using the ear, finger, and blood pressure, and heart rate was recorded to monitor hypotension. After insertion of the supraglottic airway, 20 patients developed post-induction hypotension. Those who developed hypotension showed a significantly lower preoperative perfusion index of the ear. The preoperative perfusion index of the ear could predict post-induction hypotension in patients with hypertension.
Does Orthodontic Treatment Change the Preferred Chewing Side of Patients with Malocclusion?
Authors: Arai Shuko , Kato Chiho , Watari Ippei , Ono Takashi
Published: October 2022

Whether orthodontic treatment can change the preferred chewing side (PCS) is unknown. This study examined (1) if the PCS changes after orthodontic treatment and (2) which factors contribute to this change. Two hundred fifty patients who visited the orthodontic clinic at Tokyo Medical and Dental University Hospital between 2017 and 2020 were included in the study. Mandibular kinesiograph (MKG) was taken at pre- and post-treatment, and PCS was determined. Patients who showed a change in PCS to the opposite side and those who showed no change in PCS at post-treatment were pooled into the PCS-changed and PCS-unchanged groups, respectively. The demographic, clinical, and cephalometric parameters were compared between the groups. Significant factors associated with changes in were of age < 20 years at the beginning of orthodontic treatment (odds ratio (OR), 2.00), maximum lateral mandibular movement to PCS ≥ 10.0 mm at pre-treatment (OR, 6.51), and change in occlusal canting of ≥1.0° (OR, 2.72). The predicted probability of change in PCS was 13.2%, 36.0%, and 67.5% for no factor, one factor, and two factors associated with PCS change, respectively. Orthodontic treatment may change PCS due to patient age, maximum lateral mandibular movement to PCS, and change in occlusal canting.
Degree of Pelvic Rotation in the Coronal Plane on Postoperative Radiographs Obtained after Total Hip Arthroplasty
Authors: Yeh Kuei-Lin , Wu Tai-Yin , Fuh Chiou-Shann , Chen Chu-Song , Hou Sheng-Mou , Chiang Chen-Hao , Liaw Chen-Kun
Published: October 2022

There are many published cup anteversion measurements for postoperative total hip arthroplasty (THA), including Liaw’s, Lewinnek’s, and Murray’s methods. However, most measurements ignore the potential pelvic rotation on radiographs except in Liaw’s method. Without considering pelvic rotation, clinicians can miscalculate cup anteversion. Therefore, we aimed to quantify the mean degree of pelvic rotation. Herein, we collected 388 radiographs of 98 postoperative THA hips of 77 patients and measured pelvic rotation by measuring h, the horizontal displacement of the sacrococcygeal junction associated with the upper pole of the symphysis pubis, and ssd, the distance between the sacrococcygeal junction and pubic symphysis. The angle θ of pelvic rotation was defined as θ = arc sin (h/ssd) × (180°/π). The mean degree of pelvic rotation was then calculated. The standard deviation of h was 7.84 mm, and the mean ssd was 158 mm. The potential pelvic rotation was 2.50°. The p-values from the paired t-test were all >0.05 when interobserver and intraobserver errors were assessed. This is the first study to quantify the potential pelvic rotation in the coronal plane on postoperative plain radiographs. The potential pelvic rotation was too large to be neglected during the measurement of cup anteversion.
Plasma and Urine Levels of Glycosaminoglycans in Patients with Systemic Sclerosis and Their Relationship to Selected Interleukins and Marker of Early Kidney Injury
Authors: Kuźnik-Trocha Kornelia , Winsz-Szczotka Katarzyna , Komosińska-Vassev Katarzyna , Jura-Półtorak Agnieszka , Miara Adrian , Kotyla Przemysław , Olczyk Krystyna
Published: October 2022

Systemic sclerosis (SSc) is a chronic connective tissue disease characterized by immune system dysfunction, vasculopathy, and progressive fibrosis of the skin and internal organs, resulting from excessive accumulation of extracellular matrix (ECM) elements, including collagen and proteoglycans (PGs). An uncontrolled PG proliferation, caused by disturbances in their metabolism in tissues, is most likely reflected in the quantitative changes of their components, i.e., glycosaminoglycans (GAGs), in body fluids. Therefore, the aim of this study was to quantify the different types of GAGs in the blood and urine of systemic sclerosis patients. Chondroitin/dermatan sulfates (CS/DS) and heparan sulfates/heparin (HS/H) were quantified by hexuronic acid assay and electrophoretic fractionation, while hyaluronic acid (HA) and keratan sulfates were evaluated using ELISA tests. In turn, individual urinary GAGs were determined using the Blyscan™ Sulfated Glycosaminoglycan Assay Kit. Our results showed that the plasma concentrations of CS/DS, HS/H, HA, and KS in systemic sclerosis patients were significantly higher compared with those in healthy subjects. In the case of urine measurements, we have found that in SSc patients, CS/DC concentrations were significantly higher, while HA concentrations were significantly lower compared with the values observed in the urine of healthy subjects. Importantly, the found by us correlations between plasma keratan sulfate levels and both the duration of the disease and the severity of skin lesions, as expressed by the Rodnan scale, seems to suggest this GAG as a potential marker in assessing disease progression and activity. In addition, a level of urinary excretion of all types of GAGs due to their high positive correlation with uACR, may be a valuable complementary test in the diagnosis of early renal dysfunction in the course of SSc.
Biocontrol of Mycotoxigenic Fungi Using Bacteria Isolated from Ecological Vineyard Soils
Authors: de la Huerta-Bengoechea Paula , Gil-Serna Jéssica , Melguizo Clara , Ramos Antonio J. , Prim Montserrat , Vázquez Covadonga , Patiño Belén
Published: October 2022

The presence of mycotoxin-producing Aspergillus species in vineyards is a problem for food safety and the economy. In addition, rising temperatures due to climate change are modifying microbial communities, causing the replacement of some fungal species and the rise of mycotoxins such as aflatoxins. The use of microorganisms as biological control agents (BCAs) is one of the most promising strategies to prevent fungal growth and toxin production. In this study, 513 microorganisms were isolated from organic vineyard soils in different regions of Spain. The 480 bacteria and 33 yeasts isolated were sequentially screened to select those with the most suitable characteristics to be used as BCAs. After identifying 16 isolates meeting all requirements, six bacterial isolates were selected to test their potential to control three relevant toxigenic grape fungi in vitro: A. carbonarius, A. niger and A. flavus. Isolates of Arthrobacter sp., Rhodococcus sp. and Bacillus mycoides showed an excellent ability to reduce the growth and mycotoxin concentration of the above-mentioned fungi and represent potential candidates for further study regarding their possible industrial application as a BCA.
Genetic Addiction Risk and Psychological Profiling Analyses for “Preaddiction” Severity Index
Authors: Blum Kenneth , Han David , Bowirrat Abdalla , Downs Bernard William , Bagchi Debasis , Thanos Panayotis K. , Baron David , Braverman Eric R. , Dennen Catherine A. , Gupta Ashim , Elman Igor , Badgaiyan Rajendra D. , Llanos-Gomez Luis , Khalsa Jag , Barh Debmalya , McLaughlin Thomas , Gold Mark S.
Published: October 2022

Since 1990, when our laboratory published the association of the DRD2 Taq A1 allele and severe alcoholism in JAMA, there has been an explosion of genetic candidate association studies, including genome-wide association studies (GWAS). To develop an accurate test to help identify those at risk for at least alcohol use disorder (AUD), a subset of reward deficiency syndrome (RDS), Blum’s group developed the genetic addiction risk severity (GARS) test, consisting of ten genes and eleven associated risk alleles. In order to statistically validate the selection of these risk alleles measured by GARS, we applied strict analysis to studies that investigated the association of each polymorphism with AUD or AUD-related conditions, including pain and even bariatric surgery, as a predictor of severe vulnerability to unwanted addictive behaviors, published since 1990 until now. This analysis calculated the Hardy–Weinberg Equilibrium of each polymorphism in cases and controls. Pearson’s χ2 test or Fisher’s exact test was applied to compare the gender, genotype, and allele distribution if available. The statistical analyses found the OR, 95% CI for OR, and the post risk for 8% estimation of the population’s alcoholism prevalence revealed a significant detection. Prior to these results, the United States and European patents on a ten gene panel and eleven risk alleles have been issued. In the face of the new construct of the “preaddiction” model, similar to “prediabetes”, the genetic addiction risk analysis might provide one solution missing in the treatment and prevention of the neurological disorder known as RDS.
Primary Definitive Treatment versus Ureteric Stenting in the Management of Acute Ureteric Colic: A Cost-Effectiveness Analysis
Authors: Sehgal Radha , Abu-Ghanem Yasmin , Fontaine Christina , Forster Luke , Goyal Anuj , Allen Darrell , Kucheria Rajesh , Singh Paras , Ellis Gidon , Ajayi Leye
Published: October 2022

Objectives: To analyze the differences in cost-effectiveness between primary ureteroscopy and ureteric stenting in patients with ureteric calculi in the emergency setting. Patients and Methods: Patients requiring emergency intervention for a ureteric calculus at a tertiary centre were analysed between January and December 2019. The total secondary care cost included the cost of the procedure, inpatient hospital bed days, emergency department (A&E) reattendances, ancillary procedures and any secondary definitive procedure. Results: A total of 244 patients were included. Patients underwent ureteric stenting (62.3%) or primary treatment (37.7%), including primary ureteroscopy (URS) (34%) and shock wave lithotripsy (SWL) (3.6%). The total secondary care cost was more significant in the ureteric stenting group (GBP 4485.42 vs. GBP 3536.83; p = 0.65), though not statistically significant. While mean procedural costs for primary treatment were significantly higher (GBP 2605.27 vs. GBP 1729.00; p < 0.001), costs in addition to the procedure itself were significantly lower (GBP 931.57 vs. GBP 2742.35; p < 0.001) for primary treatment compared to ureteric stenting. Those undergoing ureteric stenting had a significantly higher A&E reattendance rate compared with primary treatment (25.7% vs. 10.9%, p = 0.02) and a significantly greater cost per patient related to revisits to A&E (GBP 61.05 vs. GBP 20.87; p < 0.001). Conclusion: Primary definitive treatment for patients with acute ureteric colic, although associated with higher procedural costs than ureteric stenting, infers a significant reduction in additional expenses, notably related to fewer A&E attendances. This is particularly relevant in the COVID-19 era, where it is crucial to avoid unnecessary attendances to A&E and reduce the backlog of delayed definitive procedures. Primary treatment should be considered concordance with clinical judgement and factors such as patient preference, equipment availability and operator experience.
On the Contaminated Weighted Exponential Distribution: Applications to Modeling Insurance Claim Data
Authors: Mahdavi Abbas , Kharazmi Omid , Contreras-Reyes Javier E.
Published: October 2022

Deriving loss distribution from insurance data is a challenging task, as loss distribution is strongly skewed with heavy tails with some levels of outliers. This paper extends the weighted exponential (WE) family to the contaminated WE (CWE) family, which offers many flexible features, including bimodality and a wide range of skewness and kurtosis. We adopt Expectation-Maximization (EM) and Bayesian approaches to estimate the model, providing the likelihood and the priors for all unknown parameters. Finally, two sets of claims data are analyzed to illustrate the efficiency of the proposed method in detecting outliers.
The Value of Farmland and Its Determinants—The Current State of the Art
Authors: Tavares Vasco Capela , Tavares Fernando , Santos Eulália
Published: October 2022

This article aims to perform a literature review on the topic of farmland valuation, covering the determinants of farmland value and the models that are used to price land. To do so, recent literature on the topic was combined with classical and well-known papers. All the factors considered in these papers to explain farmland prices and/or to model them were retrieved, presented, and compared. Then, the main models proposed in the literature are presented and their suitability and goals are explained. This study can help academics as it gives an overview of the current state of the art, summarizes the main factors proposed by researchers to explain farmland prices, and sheds light on new lines of research. Besides that, it is also relevant for policymakers because farmland valuation and its use have implications on society and on urban planning, which is a hot topic under discussion.
Ecological Network Construction of a National Park Based on MSPA and MCR Models: An Example of the Proposed National Parks of “Ailaoshan-Wuliangshan” in China
Authors: Yang Caihong , Guo Huijun , Huang Xiaoyuan , Wang Yanxia , Li Xiaona , Cui Xinyuan
Published: October 2022

The establishment of ecological networks facilitates genetic exchange among species in national parks and is an effective means of avoiding habitat fragmentation. Using the proposed “Ailaoshan-Wuliangshan” in Yunnan Province, China, as the study area, the identification of ecological source sites using the morphological spatial pattern analysis (MSPA) method, extraction of potential ecological corridors using the minimum resistance model (MCR) and construction of the ecological network of national parks were performed. Based on the gravity model, important ecological corridors were selected, and corresponding ecological network optimization strategies were presented. The results showed that (1) the core area identified by MSPA was 4440.08 km2, with a low degree of fragmentation, and is distributed in strips within the woodland land classes in the study area; (2) the establishment of an ecological network model of least cost resistance based on 10 indicators in four dimensions of land tenure, geographic factors, vegetation characteristics, and human meddling; (3) the ecological network included 13 ecological source sites, 77 potential ecological corridors, 48 important ecological corridors and 25 pedestrian pathways and extracts an optimal ecological corridor connecting with the natural reserve; and (4) the network closure degree of the constructed ecological network was (1.18), line point rate (3.08), network connectivity (1.12), and cost ratio (0.98). By using the proposed ecological network construction method, ecological patches and potential corridors can be accurately identified to ensure the integrity and connectivity of the national park while minimizing the land demand pressure of the surrounding communities, which provides some reference for the construction of other national parks’ ecological networks in China.
A Combined Methods of Senile Trees Inventory in Sustainable Urban Greenery Management on the Example of the City of Sandomierz (Poland)
Authors: Durlak Wojciech , Dudkiewicz Margot , Milecka Małgorzata
Published: October 2022

The sustainable management of urban greenery consists, among others, of the inventory, valuation, and protection of trees of monumental size. This article presents the results of the inspection of 13 large trees growing in the city of Sandomierz, located in south-eastern Poland. The examined specimens belong to five species: Norway maple (Acer platanoides L.), common ash (Fraxinus excelsior L.), white poplar (Populus alba L.), English oak (Quercus robur L.), and small-leaved lime (Tilia cordata Mill.). The health condition of the trees was assessed using acoustic and electrical tomography, as well as chlorophyll fluorescence tests. Diagnostics employing sound waves and electrical resistivity were crucial in assessing tree health. The data based on chlorophyll fluorescence confirmed the results obtained during tomographic examinations. It was an innovative combination of three non-invasive methods of examining the health condition of trees and their valuation. Economic valuation allows us to reduce to common denominator issues that are often difficult to decide due to different perspectives—expressing the economic value of trees. Calculating the value of trees allowed us to show the city’s inhabitants the value of trees that are of monumental size. Thanks to the cooperation of scientists with the city authorities, an economic plan for trees of monumental size was created, distinguished by an individualized and holistic approach to each specimen covered by the study. The database prepared has a chance to become an effective management instrument used by environmental protection authorities and a source of knowledge and education for the city’s inhabitants.
Agricultural Parameters and Essential Oil Content Composition Prediction of Aniseed, Based on Growing Year, Locality and Fertilization Type—An Artificial Neural Network Approach
Authors: Pezo Lato , Lončar Biljana , Šovljanski Olja , Tomić Ana , Travičić Vanja , Pezo Milada , Aćimović Milica
Published: October 2022

Predicting yield is essential for producers, stakeholders and international interchange demand. The majority of the divergence in yield and essential oil content is associated with environmental aspects, including weather conditions, soil variety and cultivation techniques. Therefore, aniseed production was examined in this study. The categorical input variables for artificial neural network modelling were growing year (two successive growing years), growing locality (three different locations in Vojvodina Province, Serbia) and fertilization type (six different treatments). The output variables were morphological and quality parameters, with agricultural importance such as plant height, umbel diameter, number of umbels, number of seeds per umbel, 1000-seed weight, seed yield per plant, plant weight, harvest index, yield per ha, essential oil (EO) yield, germination energy, total germination, EO content, as well as the share of EOs compounds, including limonene, cis-dihydro carvone, methyl chavicol, carvone, cis-anethole, trans-anethole, β-elemene, α-himachalene, trans-β-farnesene, γ-himachalene, trans-muurola-4(14),5-diene, α-zingiberene, β-himachalene, β-bisabolene, trans-pseudoisoeugenyl 2-methylbutyrate and epoxy-pseudoisoeugenyl 2-methylbutyrate. The ANN model predicted agricultural parameters accurately, showing r2 values between 0.555 and 0.918, while r2 values for the forecasting of essential oil content were between 0.379 and 0.908. According to global sensitivity analysis, the fertilization type was a more influential variable to agricultural parameters, while the location site was more influential to essential oils content.
Optimal Inequalities for Hemi-Slant Riemannian Submersions
Authors: Akyol Mehmet Akif , Demir Ramazan , Poyraz Nergiz Önen , Vîlcu Gabriel-Eduard
Published: October 2022

In the present paper, we establish some basic inequalities involving the Ricci and scalar curvature of the vertical and the horizontal distributions for hemi-slant submersions having the total space a complex space form. We also discuss the equality case of the obtained inequalities and provide illustrative examples.
Computational Approaches to Alkaline Anion-Exchange Membranes for Fuel Cell Applications
Authors: Ouma Cecil Naphtaly Moro , Obodo Kingsley Onyebuchi , Bessarabov Dmitri
Published: October 2022

Anion-exchange membranes (AEMs) are key components in relatively novel technologies such as alkaline exchange-based membrane fuel cells and AEM-based water electrolyzers. The application of AEMs in these processes is made possible in an alkaline environment, where hydroxide ions (OH−) play the role of charge carriers in the presence of an electrocatalyst and an AEM acts as an electrical insulator blocking the transport of electrons, thereby preventing circuit break. Thus, a good AEM would allow the selective transport of OH− while preventing fuel (e.g., hydrogen, alcohol) crossover. These issues are the subjects of in-depth studies of AEMs—both experimental and theoretical studies—with particular emphasis on the ionic conductivity, ion exchange capacity, fuel crossover, durability, stability, and cell performance properties of AEMs. In this review article, the computational approaches used to investigate the properties of AEMs are discussed. The different modeling length scales are microscopic, mesoscopic, and macroscopic. The microscopic scale entails the ab initio and quantum mechanical modeling of alkaline AEMs. The mesoscopic scale entails using molecular dynamics simulations and other techniques to assess the alkaline electrolyte diffusion in AEMs, OH− transport and chemical degradation in AEMs, ion exchange capacity of an AEM, as well as morphological microstructures. This review shows that computational approaches can be used to investigate different properties of AEMs and sheds light on how the different computational domains can be deployed to investigate AEM properties.
Numerical Study on Welding Residual Stress Distribution of Corrugated Steel Webs
Authors: Zhang Haiping , Ouyang Zhiguo , Li Li , Ma Wei , Liu Yang , Chen Fanghuai , Xiao Xinhui
Published: October 2022

Residual stresses are an inevitable result of the welded fabrication process of corrugated steel webs (CSWs), resulting in structures with high and unpredictable stress fields, causing unexpected failures. The residual stress field is affected by structural parameters and the welding path of CSWs. This study proposes the welding process simulation method for CSWs with element birth and death technology. The optimization design method of heat source parameters is proposed. The feasibility of the simulation method is verified by comparing the numerical results with the experimental results of relevant literature. As a part of the study, a comparison of residual stress fields upon cooling welded CSWs with bending angles of 30, 45, and 60 degrees is presented. Thereafter, the effect of two types of single-sided welding paths and double-sided welding construction processes on residual stress distribution is discussed. Generally, the study results have shown that the equivalent residual stress near the weld reaches the maximum 344 MPa, which is very close to the Q345 steel yield strength. The size of the bending angle has no major effect on the residual stress distribution pattern, but it influences the residual stress value at the bending position. The residual stress at the bending position increases with the bending angle of CSWs. Different welding paths significantly impact the residual stress of the weld toe, and selecting a reasonable welding path can effectively reduce the residual stress value by 20 to 40 MPa.
Development of a Simple Fabrication Method for Magnetic Micro Stir Bars and Induction of Rotational Motion in Chlamydomonas reinhardtii
Authors: Shimizu Ichiro , Yamashita Kyohei , Tokunaga Eiji
Published: October 2022

A magnetic micro stirrer bar (MMSB) is used in the mixing operation of microfluidic devices. We have established a low-cost and easy method to make MMSBs using magnetic (neodymium magnets, magnet sheets) or non-magnetic powders (SUS304) as materials. We demonstrated three kinds of MMSB have respective advantages. To confirm the practical use of this MMSB, a cell suspension of the motile unicellular green alga Chlamydomonas reinhardtii was stirred in microwells. As a result, the number of rotating cells increased with only one of the two flagella mechanically removed by the shear force of the rotating bar, which facilitates the kinetic analysis of the flagellar motion of the cell. The rotational motion of the monoflagellate cell was modeled as translational (orbital) + spinning motion of a sphere in a viscous fluid and the driving force per flagellum was confirmed to be consistent with previous literature. Since the present method does not use genetic manipulations or chemicals to remove a flagellum, it is possible to obtain cells in a more naturally viable state quickly and easily than before. However, since the components eluted from the powder material harm the health of cells, it was suggested that MMSB coated with resin for long-term use would be suitable for more diverse applications.
Bacteriophages as Biocontrol Agents in Livestock Food Production
Authors: Gildea Logan , Ayariga Joseph Atia , Robertson Boakai K.
Published: October 2022

Bacteriophages have been regarded as biocontrol agents that can be used in the food industry. They can be used in various applications, such as pathogen detection and bio-preservation. Their potential to improve the quality of food and prevent foodborne illness is widespread. These bacterial viruses can also be utilized in the preservation of various other food products. The specificity and high sensitivity of bacteriophages when they lyse bacterial targets have been regarded as important factors that contribute to their great potential utility in the food industry. This review will provide an overview of their current and potential applications.
Divergent Changes in Bacterial Functionality as Affected by Root-Zone Ecological Restoration in an Aged Peach Orchard
Authors: Sun Na , Zhang Weiwei , Liao Shangqiang , Li Hong
Published: October 2022

Soil restoration is a crucial approach to improving plant productivity in orchards with soil degradation, yield reduction, and fruit quality declination in China. A self-invented root-zone ecological restoration practice (RERP) with soil conditioner, or organic fertilizer, was employed in a degraded peach orchard in Beijing in 2020 to investigate the consequent impacts on soil bacterial composition and functionality at soil depths of 0–20 cm and 20–40 cm. Bacterial diversity was sensitive to RERP, especially in subsurface soil. RERP with soil conditioner significantly increased bacterial diversity, and affected abundances of certain genera, such as a significantly increased amount of Bacillus in surface soil and Blastococcus, Microvirga, Nocardioides, and Sphingomonas in subsurface soil. It also significantly affected abundances of bacterial functions related to metabolism in subsurface soil, particularly those with low abundance such as decreased transcription abundance and increased amino acid metabolism abundance. Soil bacterial functions were observably affected by bacterial diversity and composition, particularly in the deep soil layer. RERP affected bacterial functionality via responses of soil bacteria and bacteria-mediated alterations to the changed soil property. Correlation analysis between soil properties, bacterial taxonomy, and bacterial functions revealed that RERP affected bacterial functionality by altering the soil microenvironment with ample nutrients and water supply in root zone. Consequently, shifted bacterial functionality could have a potential in orchard ecosystem services in view of fruit yield and quality. Taken together, RERP had notably positive impacts on soil bacterial diversity and functions, and a prospect of increased plant productivity in the degrade orchard ecosystem.
Host Genetics and Microbiota Interactions in Colorectal Cancer: Shared or Independent Risk?
Authors: Romero-Garmendia Irati , Garcia-Etxebarria Koldo
Published: October 2022

The role of microbiota in colorectal cancer has been studied since alterations in its composition were observed. In addition, there are more and more pieces of evidence that microbiota could be implicated in colorectal cancer progression. Thus, the components of the microbiota could be biomarkers for the diagnosis and prognosis of colorectal cancer. In addition, it is important to address how the microbiota interacts with the host and how the host shapes the microbiota, in order to understand the biological pathways and mechanisms involved in their relationship and the consequences of their interactions in colorectal cancer. Thereby, it could be possible to find feasible measures and treatments to prevent or better diagnose colorectal cancer. In this review, we will try to summarize the role of the microbiota in colorectal cancer and its interactions with the host and the host genetics, coming to some conclusions that could be useful to find the gaps in our knowledge and propose future steps in this field.
Linagliptin and Vitamin D3 Synergistically Rescue Testicular Steroidogenesis and Spermatogenesis in Cisplatin-Exposed Rats: The Crosstalk of Endoplasmic Reticulum Stress with NF-κB/iNOS Activation
Authors: Elrashidy Rania A. , Zakaria Esraa M. , Elmaghraby Asmaa M. , Abd El Aziz Rasha E. M. , Abdelgalil Ranya M. , Megahed Rehab M. , Elshiech Asmaa A. , Salama Doaa E. A. , Ibrahim Samah E.
Published: October 2022

This study investigated the therapeutic effect of linagliptin and/or vitamin D3 on testicular steroidogenesis and spermatogenesis in cisplatin-exposed rats including their impact on endoplasmic reticulum (ER) stress and NF-κB/iNOS crosstalk. Cisplatin (7 mg/kg, IP) was injected into adult male albino rats which then were orally treated with drug vehicle, linagliptin (3 mg/kg/day), vitamin D3 (10 μg/kg/day) or both drugs for four weeks. Age-matched rats were used as the control group. Serum samples and testes were collected for further analyses. Cisplatin induced testicular weight loss, deteriorated testicular architecture, loss of germ cells and declined serum and intra-testicular testosterone levels, compared to the control group. There was down-regulation of steroidogenic markers including StAR, CYP11A1, HSD3b and HSD17b in cisplatin-exposed rats, compared with controls. Cisplatin-exposed rats showed up-regulation of ER stress markers in testicular tissue along with increased expression of NF-κB and iNOS in spermatogenic and Leydig cells. These perturbations were almost reversed by vitamin D3 or linagliptin. The combined therapy exerted a more remarkable effect on testicular dysfunction than either monotherapy. These findings suggest a novel therapeutic application for linagliptin combined with vitamin D3 to restore testicular architecture, aberrant steroidogenesis and spermatogenesis after cisplatin exposure. These effects may be attributed to suppression of ER stress and NF-kB/iNOS.
Volatile Profiling of Magnolia champaca Accessions by Gas Chromatography Mass Spectrometry Coupled with Chemometrics
Authors: Sahoo Chiranjibi , Champati Bibhuti Bhusan , Dash Biswabhusan , Jena Sudipta , Ray Asit , Panda Pratap Chandra , Nayak Sanghamitra , Sahoo Ambika
Published: October 2022

Magnolia champaca (L.) Baill. ex Pierre of family Magnoliaceae, is a perennial tree with aromatic, ethnobotanical, and medicinal uses. The M. champaca leaf is reported to have a myriad of therapeutic activities, however, there are limited reports available on the chemical composition of the leaf essential oil of M. champaca. The present study explored the variation in the yield and chemical composition of leaf essential oil isolated from 52 accessions of M. champaca. Through hydrodistillation, essential oil yield was obtained, varied in the range of 0.06 ± 0.003% and 0.31 ± 0.015% (v/w) on a fresh weight basis. GC-MS analysis identified a total of 65 phytoconstituents accounting for 90.23 to 98.90% of the total oil. Sesquiterpene hydrocarbons (52.83 to 65.63%) constituted the major fraction followed by sesquiterpene alcohols (14.71 to 22.45%). The essential oils were found to be rich in β-elemene (6.64 to 38.80%), γ-muurolene (4.63 to 22.50%), and β-caryophyllene (1.10 to 20.74%). Chemometrics analyses such as PCA, PLS-DA, sPLS-DA, and cluster analyses such as hierarchical clustering, i.e., dendrogram and partitional clustering, i.e., K-means classified the essential oils of M. champaca populations into three different chemotypes: chemotype I (β-elemene), chemotype II (γ-muurolene) and chemotype III (β-caryophyllene). The chemical polymorphism analyzed in the studied populations would facilitate the selection of chemotypes with specific compounds. The chemotypes identified in the M. champaca populations could be developed as promising bio-resources for conservation and pharmaceutical application and further improvement of the taxa.
Native Mass Spectrometry Coupled to Spectroscopic Methods to Investigate the Effect of Soybean Isoflavones on Structural Stability and Aggregation of Zinc Deficient and Metal-Free Superoxide Dismutase
Authors: Bian Xinyu , Zhuang Xiaoyu , Xing Junpeng , Liu Shu , Liu Zhiqiang , Song Fengrui
Published: October 2022

The deficiency or wrong combination of metal ions in Cu, Zn-superoxide dismutase (SOD1), is regarded as one of the main factors causing the aggregation of SOD1 and then inducing amyotrophic lateral sclerosis (ALS). A ligands-targets screening process based on native electrospray ionization ion mobility mass spectrometry (ESI-IMS-MS) was established in this study. Four glycosides including daidzin, sophoricoside, glycitin, and genistin were screened out from seven soybean isoflavone compounds and were found to interact with zinc-deficient or metal-free SOD1. The structure and conformation stability of metal-free and zinc-deficient SOD1 and their complexes with the four glycosides was investigated by collision-induced dissociation (CID) and collision-induced unfolding (CIU). The four glycosides could strongly bind to the metal-free and copper recombined SOD1 and enhance the folding stability of these proteins. Additionally, the ThT fluorescence assay showed that these glycosides could inhibit the toxic aggregation of the zinc-deficient or metal-free SOD1. The competitive interaction experiments together with molecular docking indicate that glycitin, which showed the best stabilizing effects, binds with SOD1 between β-sheet 6 and loop IV. In short, this study provides good insight into the relationship between inhibitors and different SOD1s.
Identification of a Glycosylated Fraction Involved in Mushroom Off-Flavors in Grapes: Influence of Gray Rot, Powdery Mildew and Crustomyces subabruptus
Authors: Delcros Léa , Godet Teddy , Collas Sylvie , Hervé Marion , Blondin Bruno , Roland Aurélie
Published: October 2022

An organoleptic defect, termed fresh mushroom off-flavor and mainly caused by the C8 compounds 1-octen-3-one, 3-octanol and 1-octen-3-ol, has been identified in wines and spirits since the 2000s. The aim of this work was to identify the presence of glycosidic precursors of these C8 compounds and to evaluate the influence of different molds on the glycosylated fractions of three grape varieties. Must samples contaminated by molds (gray rot, powdery mildew and Crustomyces subabruptus) and three levels of attack severity (from healthy to 10–15%) were studied. After a β-glycosidase treatment on Meunier and Pinot noir musts contaminated by Crustomyces subabruptus, 1-octen-3-one, 1-octen-3-ol and 3-octanol were identified by GC-MS, proving the existence of glycosidic fractions in the musts. A Pinot noir must contaminated by Crustomyces subabruptus displayed a 230% increase in the glycosylated fraction responsible for 1-octen-3-one in comparison with an uncontaminated sample. Powdery mildew did not appear to affect the levels of the studied glycosidic fractions in Chardonnay musts. Gray rot on Meunier and Pinot noir musts had opposite effects depending on glycoside type, decreasing the 1-octen-3-one fraction and increasing the 1-octen-3-ol fraction.
Brazilian Red Propolis Presents Promising Anti-H. pylori Activity in In Vitro and In Vivo Assays with the Ability to Modulate the Immune Response
Authors: Santiago Mariana B. , Leandro Luis Fernando , Rosa Rafael B. , Silva Murilo V. , Teixeira Samuel C. , Servato João Paulo S. , Ambrósio Sérgio Ricardo , Veneziani Rodrigo Cassio S. , Aldana-Mejía Jennyfer A. , Bastos Jairo K. , Martins Carlos Henrique G.
Published: October 2022

Helicobacter pylori is a Gram-negative, microaerophilic, curved-rod, flagellated bacterium commonly found in the stomach mucosa and associated with different gastrointestinal diseases. With high levels of prevalence worldwide, it has developed resistance to the antibiotics used in its therapy. Brazilian red propolis has been studied due to its biological properties, and in the literature, it has shown promising antibacterial activities. The aim of this study was to evaluate anti-H. pylori from the crude hydroalcoholic extract of Brazilian red propolis (CHEBRP). For this, in vitro determination of the minimum inhibitory and bactericidal concentration (MIC/MBC) and synergistic activity and in vivo, microbiological, and histopathological analyses using Wistar rats were carried out using CHEBRP against H. pylori strains (ATCC 46523 and clinical isolate). CHEBRP presented MIC/MBC of 50 and 100 μg/mL against H. pylori strains (ATCC 43526 and clinical isolate, respectively) and tetracycline MIC/MBC of 0.74 µg/mL. The association of CHEBRP with tetracycline had an indifferent effect. In the stomach mucosa of rats, all treatments performed significantly decreased the number of H. pylori, and a concentration of 300 mg/kg was able to modulate the inflammatory response in the tissue. Therefore, CHEBRP showed promising anti-H. pylori in in vitro and in vivo assays.
Skyrmion Dynamics in a Double-Disk Geometry under an Electric Current: Part Two
Authors: Castillo-Sepúlveda Sebastián , Vélez Javier A. , Corona Rosa M. , Carvalho-Santos Vagson L. , Laroze David , Altbir Dora
Published: October 2022

Using numerical simulations, we studied the dynamics of two skyrmions nucleated in a double-disk structure. Depending on the geometry and the electric current, different regimes for the dynamical behavior of the skyrmions were obtained. Our results evidence that there are four main dynamic regimes depending on the geometry and current: stagnation points, oscillatory motion, and two types of skyrmion annihilation: partial and total. Our findings are explained as a result of the different forces that skyrmions are subject to and are shown in a state diagram of the dynamical states that allow an adequate understanding of the associate phenomena.
Novel InGaSb/AlP Quantum Dots for Non-Volatile Memories
Authors: Abramkin Demid S. , Atuchin Victor V.
Published: October 2022

Non-volatile memories based on the flash architecture with self-assembled III–V quantum dots (SAQDs) used as a floating gate are one of the prospective directions for universal memories. The central goal of this field is the search for a novel SAQD with hole localization energy (Eloc) sufficient for a long charge storage (10 years). In the present work, the hole states’ energy spectrum in novel InGaSb/AlP SAQDs was analyzed theoretically with a focus on its possible application in non-volatile memories. Material intermixing and formation of strained SAQDs from a GaxAl1−xSbyP1−y, InxAl1−xSbyP1−y or an InxGa1−xSbyP1−y alloy were taken into account. Critical sizes of SAQDs, with respect to the introduction of misfit dislocation as a function of alloy composition, were estimated using the force-balancing model. A variation in SAQDs’ composition together with dot sizes allowed us to find that the optimal configuration for the non-volatile memory application is GaSbP/AlP SAQDs with the 0.55–0.65 Sb fraction and a height of 4–4.5 nm, providing the Eloc value of 1.35–1.50 eV. Additionally, the hole energy spectra in unstrained InSb/AlP and GaSb/AlP SAQDs were calculated. Eloc values up to 1.65–1.70 eV were predicted, and that makes unstrained InGaSb/AlP SAQDs a prospective object for the non-volatile memory application.
The Continuum of Microbial Ecosystems along the Female Reproductive Tract: Implications for Health and Fertility
Authors: Nakama Claudia , Thompson Brice , Szybala Cory , McBeth Andrea , Dobner Piper , Zwickey Heather
Published: October 2022

The microbial ecosystem of the female urogenital tract is composed of many niche microenvironments across multiple organ systems in the urinary and reproductive tract. It is complex and contains a variety of bacteria, archaea, viruses, yeast, and protozoa—Many of which are still unidentified or whose functionality is unknown. Unlike the gut microbiome, whose composition is relatively stable in the absence of external perturbations, the urogenital microbiome is constantly shifting in response to biological cycles such as hormonal fluctuations during menstruation. Microbial composition differs between women but the dominance of some microbial families, such as Lactobacillaceae and other lactic acid-producing bacteria, are shared. Research suggests that it is difficult to define a universal healthy urogenital microbiome and consequently map a path to recovery from disease due to dysbiosis. Due to its temporal shifts, the female urogenital microbiome offers a unique opportunity to examine the biological mechanisms that work to restore a microbiome to its baseline. Common functional disorders in women’s health are often difficult to diagnose and treat, are prone to recurrence, and can lead to subfertility or infertility. Knowledge of the interconnected microorganism communities along the continuum of the female reproductive tract could revolutionize the quality of women’s healthcare.
Evaluation of Lactiplantibacillus plantarum KAU007 against Low-Pathogenic Avian Influenza Virus (H9N2)
Authors: Rather Irfan A. , Kamli Majid Rasool , Sabir Jamal S. M. , Ali Sajad
Published: October 2022

Avian influenza A viruses (AIVs) pose a persistent threat to humans owing to their reassortment and antigenic drift properties. Among them is H9N2, a low-pathogenic avian influenza virus first discovered in the non-human host and later found infective to humans with huge pandemic potential. In recent years, antiviral resistance has become an increasing threat to public health. Additionally, vaccination against AIVs is becoming increasingly challenging with little success due to antigenic drift. This has resulted in a growing demand for products that can replace the presently in-use medications and the development of innovative antiviral therapies. In this study, we systematically investigate the antiviral potential of lactic acid bacteria against H9N2. Bacteria that produce lactic acid are commonly used in food processing. In addition, these bacteria are considered more affordable, effective, and safe “nutraceuticals” than other alternative medicines. We tested Lactiplantibacillus plantarum KAU007 against the low-pathogenic avian influenza virus (H9N2). As confirmed by the hemagglutination assay, KAU007 showed potent antiviral activity against H9N2 and vigorous antioxidant activity. The CFCS showed a dose-dependent reduction in the levels of IL-6 and IFN-γ. Thus, KAU007 might be considered a potential H9N2 target-based probiotic.
Decoherence of Higher Order Orbital Angular Momentum Entangled State in Non-Kolmogorov Turbulence
Authors: Yan Xiang , Zhang Pengfei , Wu Boying , Zhang Jinghui
Published: October 2022

The decay of OAM entanglement in non-Kolmogorov turbulence has been numerically evaluated. In this work, we explore the evolution of OAM entanglement with higher-order OAM mode in the weak scintillation regime. In particular, the results of the numerical evaluation show that the OAM entanglement state with higher value of the azimuthal mode and larger radial quantum number survives over a longer distance. Meanwhile, the beam parameters and turbulence parameters usually have significant influences on OAM entanglement. In addition, it is demonstrated that the effect of turbulence on the OAM entanglement is the most serious when the generalized exponent is around 3.07.