bluuebunny/crossref_metadata_2025 huggingface dataset:
The Diversity of Fungal Endophytes from Wild Grape Vitis amurensis Rupr
Authors: Aleynova Olga A. , Nityagovsky Nikolay N. , Suprun Andrey R. , Ananev Alexey A. , Dubrovina Alexandra S. , Kiselev Konstantin V.
Published: October 2022

Grapevine endophytic fungi have great potential for application in agriculture and represent an important source of various compounds with valuable biological activities. Wild grapevine is known to host a great number of rare and unidentified endophytes and may represent a rich repository of potential vineyard biocontrol agents. This investigation aimed to study the fungal endophytic community of wild grape Vitis amurensis Rupr. using a cultivation-dependent (fungi sowing) and a cultivation-independent (next-generation sequencing, NGS) approach. A comprehensive analysis of the endophytic fungal community in different organs of V. amurensis and under different environmental conditions has been performed. According to the NGS analysis, 12 taxa of class level were presented in different grapevine organs (stem, leaf, berry, seed). Among the 12 taxa, sequences of two fungal classes were the most represented: Dothideomycetes—60% and Tremellomycetes—33%. The top five taxa included Vishniacozyma, Aureobasidiaceae, Cladosporium, Septoria and Papiliotrema. The highest number of fungal isolates and sequences were detected in the grape leaves. The present data also revealed that lower temperatures and increased precipitation favored the number and diversity of endophytic fungi in the wild Amur grape. The number of fungi recovered from grape tissues in autumn was two times higher than in summer. Thus, this study is the first to describe and analyze the biodiversity of the endophytic fungal community in wild grapevine V. amurensis.
Zinc and Provitamin A Biofortified Maize Genotypes Exhibited Potent to Reduce Hidden—Hunger in Nepal
Authors: Dhakal Krishna , Magar Amar Bahadur Pun , Pokhrel Keshab Raj , Baral Bandhu Raj , Beshir Abdurahman , Shrestha Hari Kumar , Vista Shree Prasad
Published: October 2022

Zinc deficiency affects one third of the population worldwide, and vitamin A deficiency is a prevalent public health issue in Sub-Saharan Africa and South-Asia, including Nepal. Crop biofortification is the sustainable solution to these health—related problems, thus we conducted two different field trials in an alpha lattice design to identify zinc and provitamin A biofortified maize genotypes consistent and competitive in performance over the contrasting seasons (Season 1: 18 February to 6 July 2020 and Season 2: 31 August to 1 February, 2020/21). In our study, the performance of introduced maize genotypes (zinc—15 and provitamin A biofortified—24) were compared with that of the local check, focusing on the overall agro-morphology, yield attributes, yield, and kernel zinc and total carotenoid content. Zinc and total carotenoid in the tested genotypes were found in the range between 14.2 and 24.8 mg kg−1 and between 1.8 and 3.6 mg 100 g−1. Genotypes A1831-8 from zinc and EEPVAH-46 from provitamin A biofortified maize trial recorded kernel zinc and total carotenoid as high as 52.3, and 79.5%, respectively, compared to the local check (DMH849). The provitamin A genotypes EEPVAH-46 and EEPVAH-51 (total carotenoid: 3.6 and 3.3 mg 100 g−1), and zinc biofortified genotypes A1847-10 and A1803-42 (20.4 and 22.4 mg kg−1 zinc) were identified as superior genotypes based on their yield consistency over the environments and higher provitamin A and zinc content compared to the check. In addition, farmers can explore August sowing to harvest green cobs during December-January to boost up the emerging green cob business.
OsMADS58 Stabilizes Gene Regulatory Circuits during Rice Stamen Development
Authors: Shen Liping , Tian Feng , Cheng Zhukuan , Zhao Qiang , Feng Qi , Zhao Yan , Han Bin , Fang Yuhan , Lin Yanan , Chen Rui , Wang Donghui , Sun Wenfeng , Sun Jiaqi , Zeng Hongyun , Yao Nan , Gao Ge , Luo Jingchu , Xu Zhihong , Bai Shunong
Published: October 2022

Rice (Oryza sativa) OsMADS58 is a C-class MADS box protein, and characterization of a transposon insertion mutant osmads58 suggested that OsMADS58 plays a role in stamen development. However, as no null mutation has been obtained, its role has remained unclear. Here, we report that the CRISPR knockout mutant osmads58 exhibits complex altered phenotypes, including anomalous diploid germ cells, aberrant meiosis, and delayed tapetum degeneration. This CRISPR mutant line exhibited stronger changes in expression of OsMADS58 target genes compared with the osmads58 dSpm (transposon insertion) line, along with changes in multiple pathways related to early stamen development. Notably, transcriptional regulatory circuits in young panicles covering the stamen at stages 4–6 were substantially altered in the CRISPR line compared to the dSpm line. These findings strongly suggest that the pleiotropic effects of OsMADS58 on stamen development derive from a potential role in stabilizing gene regulatory circuits during early stamen development. Thus, this work opens new avenues for viewing and deciphering the regulatory mechanisms of early stamen development from a network perspective.
Sideritis elica, a New Species of Lamiaceae from Bulgaria, Revealed by Morphology and Molecular Phylogeny
Authors: Aneva Ina , Zhelev Petar , Bonchev Georgi
Published: October 2022

Sideritis elica, from the Rhodope Mountains, is described as a species new to science. Results of a detailed morphological analysis were combined with the data of molecular analyses using DNA barcoding as an efficient tool for the genetic, taxonomic identification of plants. The combination of morphological features distinguishes the new species well: Its first three uppermost leaf pairs are significantly shorter and wider, the branchiness of the stems is much more frequent, the whole plant is much more lanate, and it looks almost white, as opposed to the other closed species of section Empedoclia, which look grayish green. The molecular analysis, based on the rbcL and trnH-psbA regions, supports the morphological data about the divergence of Sideritis scardica and Sideritis elica. The studied populations of the two taxa were found to be genetically distant (up to 6.8% polymorphism for trnH-psbA) with distinct population-specific nucleotide patterns, while no polymorphism in the DNA barcodes was detected within the Sideritis elica population. The results confirm the existence of a new species called Sideritis elica, which occurs in the nature reserve Chervenata Stena, located in the northern part of the Central Rhodope Mountains. There were only 12 individuals found in the locality, which underlines the necessity of conservation measures.
Relationships between Agronomic Traits of Moringa Accessions and In Vitro Gas Production Characteristics of a Test Feed Incubated with or without Moringa Plant Leaf Extracts
Authors: Zeru Addisu Endalew , Hassen Abubeker , Apostolides Zeno , Tjelele Julius
Published: October 2022

The use of medicinal plants and their extracts has recently attracted the attention of many researchers as a methane (CH4) mitigation strategy. This study evaluated the relationship of agronomic traits of Moringa accessions with in vitro gas production measurements and feed digestibility from ruminants. Twelve Moringa accessions were grown at the Roodeplaat experimental site of the Agricultural Research Council in Pretoria, South Africa. Agronomic traits, such as seedling survival rate, leaf yield, canopy and stem diameter, plant height, number of primary branches, plant vigor, greenness, chlorosis, disease and pest incidences were recorded. The leaves were harvested in the fifth month after transplanting to the field. Freeze-dried leaves were extracted with methanol, and their total phenolic and total flavonoid contents were determined. The extract was applied at a dose of 50 mg/kg of dry matter (DM) feed for in vitro gas production studies. Most of the growth and agronomic traits, i.e., seedling survival rate, leaf yield, canopy diameter, plant height, number of primary branches, the score of plant vigor, and greenness, total phenolics and flavonoids were significantly different among the accessions except for stem diameter and chlorosis score. All accession leaf extracts significantly reduced the total gas and CH4 production compared with the control with equal or higher in vitro organic matter digestibility. Higher CH4 inhibition was obtained in Moringa oleifera (M. oleifera) A3 (28.4%) and A11 (29.1%), whereas a lower inhibition was recorded in A1 (17.9%) and A2 (18.2%). The total phenolic (0.62) and total flavonoid (0.71) contents as well as most agronomic traits of the accessions were positively correlated with the CH4 inhibition potential of the accessions. Moringa oleifera accessions A3, A8 and A11 resulted in higher in vitro CH4 inhibition potential and improved organic matter digestibility of the feed with equal or higher adaptability performances in the field. Thus, there is a possibility of selecting Moringa accessions for higher antimethanogenic activity without compromising the feed digestibility by selecting for higher total phenolics, total flavonoids and agronomic performances traits. There is a need for further study to determine the long-term adaptability of promising accessions in the study area with concurrent antimethanogenesis efficacy when used in the diet of ruminant animals.
Seasonal Variation of Tropical Savanna Altered Agronomic Adaptation of Stock-6-Derived Inducer Lines
Authors: Sintanaparadee Paepan , Dermail Abil , Lübberstedt Thomas , Lertrat Kamol , Chankaew Sompong , Ruanjaichon Vinitchan , Phakamas Nittaya , Suriharn Khundej
Published: October 2022

Tropicalization is one of the major objectives in breeding haploid inducers to address the poor adaptation of temperate haploid inducers in doubled haploid production in tropical maize. Gaining a better understanding of weather profiles in targeted agroecology is important. This study aimed to investigate the seasonal variation of tropical savanna climate and its impact on agronomic traits and haploid induction rate (HIR) of Stock-6-derived haploid inducer lines. A total of 14 haploid inducers were evaluated across two typical growing seasons between 2020 and 2021. Weather data were collected on daily minimum and maximum temperatures, relative humidity, precipitation, and solar radiation whereas phenotypic data were recorded on plant phenology, tassel attributes, plant stature, ear components, inducer seed rate (ISR), and HIR. The effects of season, genotype, and genotype by season were significant for all traits except season factor on ISR. Seasonal variation existed where the dry season was more suitable for haploid induction and inducer maintenance, as haploid inducers revealed better agronomic performance and seed set, delayed flowering dates, and higher HIR. Since the crossover performance of haploid inducers over seasons was detected, further implications on genotype selection in each season are discussed.
Cuscuta australis Parasitism-Induced Changes in the Proteome and Photosynthetic Parameters of Arabidopsis thaliana
Authors: Zagorchev Lyuben , Du Zhaokui , Shi Yongbin , Teofanova Denitsa , Li Junmin
Published: October 2022

Cuscuta australis is a widely distributed stem parasitic plant, infecting a variety of host plants. Its parasitism has a negative effect on the hosts, mainly due to the exhaustion of nutrients, thus negatively affecting the growth and development. However, recent studies indicated that the effect of parasitism may extend beyond the simple extraction of organic compounds, water, and minerals. In the present study, the model plant Arabidopsis thaliana was used as a host for Cuscuta australis, to study the effect of the parasite on the photosynthetic parameters and the proteome after short-term infection. To test this, a highly sensitive portable photosynthesis system and gel-based MS/MS proteomics were employed. It was found that the parasite has a dramatic negative effect on the photosynthetic ability of the host, as well as causing the up-regulation of stress-related proteins. Simultaneously, proteins involved in both decreased permeability and loosening of the cell wall of the host were found to be up-regulated.
Identification of Disease Resistance Parents and Genome-Wide Association Mapping of Resistance in Spring Wheat
Authors: Iqbal Muhammad , Semagn Kassa , Jarquin Diego , Randhawa Harpinder , McCallum Brent D. , Howard Reka , Aboukhaddour Reem , Ciechanowska Izabela , Strenzke Klaus , Crossa José , Céron-Rojas J. Jesus , N’Diaye Amidou , Pozniak Curtis , Spaner Dean
Published: October 2022

The likelihood of success in developing modern cultivars depend on multiple factors, including the identification of suitable parents to initiate new crosses, and characterizations of genomic regions associated with target traits. The objectives of the present study were to (a) determine the best economic weights of four major wheat diseases (leaf spot, common bunt, leaf rust, and stripe rust) and grain yield for multi-trait restrictive linear phenotypic selection index (RLPSI), (b) select the top 10% cultivars and lines (hereafter referred as genotypes) with better resistance to combinations of the four diseases and acceptable grain yield as potential parents, and (c) map genomic regions associated with resistance to each disease using genome-wide association study (GWAS). A diversity panel of 196 spring wheat genotypes was evaluated for their reaction to stripe rust at eight environments, leaf rust at four environments, leaf spot at three environments, common bunt at two environments, and grain yield at five environments. The panel was genotyped with the Wheat 90K SNP array and a few KASP SNPs of which we used 23,342 markers for statistical analyses. The RLPSI analysis performed by restricting the expected genetic gain for yield displayed significant (p < 0.05) differences among the 3125 economic weights. Using the best four economic weights, a subset of 22 of the 196 genotypes were selected as potential parents with resistance to the four diseases and acceptable grain yield. GWAS identified 37 genomic regions, which included 12 for common bunt, 13 for leaf rust, 5 for stripe rust, and 7 for leaf spot. Each genomic region explained from 6.6 to 16.9% and together accounted for 39.4% of the stripe rust, 49.1% of the leaf spot, 94.0% of the leaf rust, and 97.9% of the common bunt phenotypic variance combined across all environments. Results from this study provide valuable information for wheat breeders selecting parental combinations for new crosses to develop improved germplasm with enhanced resistance to the four diseases as well as the physical positions of genomic regions that confer resistance, which facilitates direct comparisons for independent mapping studies in the future.
Energy vs. Nutritional Potential of Virginia Mallow (Sida hermaphrodita L.) and Cup Plant (Silphium perfoliatum L.)
Authors: Šurić Jona , Šic Žlabur Jana , Peter Anamarija , Brandić Ivan , Voća Sandra , Dujmović Mia , Leto Josip , Voća Neven
Published: October 2022

The world today faces several pressing challenges: energy from non-renewable sources is becoming increasingly expensive, while at the same time the use of agricultural land for food production is decreasing at the expense of biofuel production. Energy crops offer a potential solution to maximizing the use of land. In order to provide new value to the by-product, it is necessary to investigate its possible nutritional and functional potential. Therefore, the main objective of this study was to determine the energetic, nutritional, and functional potential of the species Sida hermaphrodita L. and Silphium perfoliatum L. in different phenophases. The analyzed energy potential of the mentioned species is not negligible due to the high determined calorific value (17.36 MJ/kg for Virginia mallow and 15.46 MJ/kg for the cup plant), high coke content (15.49% for the cup plant and 10.45% for Virginia mallow), and desirably high carbon content, almost 45%, in both species. The phenophase of the plant had a significant influence on the content of the analyzed specialized metabolites (SM) in the leaves, with a high content of ascorbic acid at the full-flowering stage in Virginia mallow (229.79 mg/100 g fw) and in cup plants at the end of flowering (122.57 mg/100 g fw). In addition, both species have high content of polyphenols: as much as 1079.59 mg GAE/100 g were determined in the leaves of Virginia mallow at the pre-flowering stage and 1115.21 mg GAE/100 g fw in the cup plants at the full-flowering stage. An HPLC analysis showed high levels of ellagic acid and naringin in both species. In addition, both species have high total chlorophyll and carotenoid concentrations. Due to their high content of SM, both species are characterized by a high antioxidant capacity. It can be concluded that, in addition to their energetic importance, these two plants are also an important source of bioactive compounds; thus, their nutritional and functional potential for further use as value-added by-products should not be neglected.
Plankton Community Respiration and Particulate Organic Carbon in the Kuroshio East of Taiwan
Authors: Chen Chung-Chi , Meng Pei-Jie , Hsieh Chih-hao , Jan Sen
Published: October 2022

Biological organic carbon production and consumption play a fundamental role in the understanding of organic carbon cycling in oceans. However, studies on them in the Kuroshio, the western boundary current in the North Pacific Ocean, are scarce. To better understand the variations of plankton community respiration (CR) and particulate organic carbon (POC), eight cruises. which covered four seasons over a 2-year period, were surveyed across the Kuroshio at the KTV1 transect east of Taiwan. Spatially, a coastal uplift of isotherms (i.e., onshore lifting and offshore deepening) was observed along the KTV1 transect. During the uplift, the cold and nutrient-rich deep waters shoal to shallow water and enhance phytoplankton growth, resulting in higher values of phytoplankton, POC, and plankton CR on the onshore side. In this study, phytoplankton was dominated by picophytoplankton including Prochlorococcus, Synechococcus, and picoeukaryotes. Plankton CR was low, and its mean depth-normalized integrated rate (the upper 100 m water depth) ranged from 7.07 to 22.27 mg C m−3 d−1, to which the picophytoplankton and heterotrophic bacteria contributed the most. The mean depth-normalized integrated value of POC ranged from 12.7 to 21.6 μg C L−1. POC is mainly associated with phytoplankton biomass with a mean carbon ratio of chlorophyll a/POC ≈ 1.03. All results suggest that plankton CR and POC variations may be associated with picoplankton dynamics in the Kuroshio.
Nutritional and Phyto-Therapeutic Value of the Halophyte Cladium mariscus L. (Pohl.): A Special Focus on Seeds
Authors: Rodrigues Maria João , Custódio Luísa , Mecha Débora , Zengin Gokhan , Cziáky Zoltán , Sotkó Gyula , Pereira Catarina Guerreiro
Published: October 2022

This work searched for the phyto-therapeutic potential and nutritional value of seeds from the halophyte Cladium mariscus L. (Pohl.), aiming at its use as a source of bioactive ingredients for the food industry. Hence, the nutritional profile, including minerals, of seeds biomass was determined; food-grade samples were prepared, and their phytochemical fingerprinting assessed. Extracts were evaluated for in vitro antioxidant potential, inhibitory capacity towards enzymes related to neuroprotection, diabetes, and hyperpigmentation, and anti-inflammatory properties, along with a toxicological assessment. Sawgrass seeds can be considered a proper nutritional source with a good supply of minerals. All extracts had a high level of total phenolics (65.3–394.4 mg GAE/g DW) and showed a chemically rich and diverse profile of metabolites that have several biological properties described (e.g., antioxidant, anti-inflammatory). Extracts had no significant toxicity (cell viabilities > 80%) and were overall strong antioxidants (particularly at radical scavenging and reducing iron), effective tyrosinase inhibitors (55–71 mg KAE/g DW), showed anti-inflammatory properties (30–60% NO decrease), and had moderate capacity to inhibit enzymes related to neuroprotection (AChE 3.7–4.2, BChE 4.3–6.0 mg GALE/g DW) and diabetes (α-glucosidase 1.0–1.1, α-amylase 0.8–1.1 mmol ACAE/g). Altogether, results suggest that sawgrass seeds have the potential to be exploited as a new food product and are a reservoir of bioactive molecules with prospective applications as ingredients for value-added, functional, and/or preservative food products.
Geographical Patterns of Genetic Variation in Locoto Chile (Capsicum pubescens) in the Americas Inferred by Genome-Wide Data Analysis
Authors: Palombo Nahuel E. , Carrizo García Carolina
Published: October 2022

The locoto chile (Capsicum pubescens) is a regionally important food crop grown and marketed throughout the mid-highlands of South andCentral America, but little is known about its evolution and the diversity it harbours. An initial scan of genetic diversity and structure across its cultivation range was conducted, the first one using a genomic approach. The RAD-sequencing methodology was applied to a sampling of C. pubescens germplasm consisting of 67 accessions from different American countries, covering its range of distribution/cultivation on the continent. The RAD-seq SNP data obtained clustered the accessions into three major groups, with a high degree of admixture/reticulation among them. Moderate but significant differentiation and geographic structuration were found, depicting a south–north pattern in the distribution of genetic variation. The highest levels of diversity were found among central-western Bolivian individuals, while the lowest was found across Central America-Mexican germplasm. This study provides new genome-wide supported insights into the diversity and differentiation of C. pubescens, as well as a starting point for more efficient use of its genetic variation and germplasm conservation efforts. The findings also contribute to understanding the evolutionary history of C. pubescens, but further investigation is needed to disentangle its origin and diversification under domestication.
Bioprospecting Soil Bacteria from Arid Zones to Increase Plant Tolerance to Drought: Growth and Biochemical Status of Maize Inoculated with Plant Growth-Promoting Bacteria Isolated from Sal Island, Cape Verde
Authors: Cruz Catarina , Cardoso Paulo , Santos Jacinta , Matos Diana , Figueira Etelvina
Published: October 2022

Climate change and anthropogenic activities are responsible for extensive crop yield losses, with negative impact on global agricultural production. The occurrence of extreme weather events such as drought is a big challenge for agriculture, negatively impacting crops. Thus, methodologies reducing crop dependence on water will be a great advantage. Plant roots are colonized by soil bacteria, that can establish beneficial associations with plants, increasing crop productivity and plant tolerance to abiotic stresses. The aim of this study was to promote plant growth and to increase crop tolerance to drought by inoculation with osmotolerant bacterial strains. For that, bacteria were isolated from plants growing in Sal Island (Cape Verde) and identified. The osmotolerance and plant-growth promotion (PGP) abilities of the strains were determined. A maize seed cultivar tolerant to drought was inoculated with the strains evidencing best PGP capacity and osmo-tolerance. Results evidenced the ability of some bacterial strains increasing the development and inducing osmotolerance in plants. These results evidence the potential of osmotolerant bacteria to further increase the level of tolerance of maize varieties tolerant to drought, decreasing the dependence of this crop on irrigation, and open new perspectives to growth maize in drought affected areas and to use water more efficiently.
Camellia japonica Root Extract Increases Antioxidant Genes by Induction of NRF2 in HeLa Cells
Authors: Kim Jung-Hwan , Yang Heejung , Kim Kee K.
Published: October 2022

Camellia japonica L. (Theaceae) has been used for medicinal and cosmetic purposes in East Asian countries. Most functional components were obtained from the upper parts of the tree, such as leaves, flowers, or seeds. Here, we report a functional effect of the 80% methanolic extract of C. japonica root (CJRE) on antioxidative stress in HeLa cells. The nuclear factor erythroid-derived 2-related factor 2 (NRF2) is a key transcription factor that triggers the induction of oxidative stress-relating genes and drug detoxification. As result, CJRE showed a strong anti-radical scavenging effect in a dose-dependent manner. In addition, the induction of antioxidant response elements (ARE)-luciferase activity was maximized at CJRE 200 µg/mL. Furthermore, CJRE induced the mRNA levels of HO-1 and NQO1 by the nuclear NRF2 accumulation. As a possible mechanism of Nrf2 activation, the phosphorylation of p38 and ERK1/2 signaling might fortify the NRF2 induction as well as its stability. However, the phosphorylation of AKT is rather decreased. Taken together, CJRE may potentiate the antioxidant effects by increasing the NRF2 signaling through MAP kinase signaling and the properties of its radical scavenging activity. Thus, CJRE could apply for other medicinal and cosmetic purposes.
Dynamic Alteration of Microbial Communities of Duckweeds from Nature to Nutrient-Deficient Condition
Authors: Bunyoo Chakrit , Roongsattham Peerapat , Khumwan Sirikorn , Phonmakham Juthaporn , Wonnapinij Passorn , Thamchaipenet Arinthip
Published: October 2022

Duckweeds live with complex assemblages of microbes as holobionts that play an important role in duckweed growth and phytoremediation ability. In this study, the structure and diversity of duckweed-associated bacteria (DAB) among four duckweed subtypes under natural and nutrient-deficient conditions were investigated using V3-V4 16S rRNA amplicon sequencing. High throughput sequencing analysis indicated that phylum Proteobacteria was predominant in across duckweed samples. A total of 24 microbial genera were identified as a core microbiome that presented in high abundance with consistent proportions across all duckweed subtypes. The most abundant microbes belonged to the genus Rhodobacter, followed by other common DAB, including Acinetobacter, Allorhizobium-Neorhizobium-Pararhizobium-Rhizobium, and Pseudomonas. After nutrient-deficient stress, diversity of microbial communities was significantly deceased. However, the relative abundance of Allorhizobium-Neorhizobium-Pararhizobium-Rhizobium, Pelomonas, Roseateles and Novosphingobium were significantly enhanced in stressed duckweeds. Functional prediction of the metagenome data displayed the relative abundance of essential pathways involved in DAB colonization, such as bacterial motility and biofilm formation, as well as biodegradable ability, such as benzoate degradation and nitrogen metabolism, were significantly enriched under stress condition. The findings improve the understanding of the complexity of duckweed microbiomes and facilitate the establishment of a stable microbiome used for co-cultivation with duckweeds for enhancement of biomass and phytoremediation under environmental stress.
Elemental Composition of Above and Belowground Mangrove Tissue and Sediment in Managed and Unmanaged Compartments of the Matang Mangrove Forest Reserve
Authors: Khan Waseem Razzaq , Aljahdali Mohammed Othman
Published: October 2022

Mangrove productivity depends on the storage of nutrients and elements. Elemental concentrations were examined in leaves, roots, and sediments for three age stands (15, 25 years, and VJR) of Rhizophora apiculata in the Matang Mangrove Forest Reserve (MMFR). Six compartments with two compartments each for each age group were used to analyze sixteen elements. Four types of elemental patterns were examined with decreasing order during analysis: (1) Cd < Cu < Pb < Zn < Mg < Mn < Fe < K < Na < Ca and P% < S% < N% < C% in leaves, (2) Cd < Pb < Cu < Zn < Mg < Mn < Fe < K < Na < Ca and P% < S% < N% < C% in roots, (3) Cd < Pb < Cu < Zn < Mg < Mn < K < Fe < Na < Ca and P% < N% < S% < C% in sediment samples and (4) Cd(S) < Pb(S) < Cu(S) < Zn(S) < Mg(S) < Mn(L) < K(L) < Fe(S) < Na(R) < Ca(R) and P%(S) < S%(S) < N%(L) < C%(R) collectively for all samples. Evidence that elements do not store primarily in above-ground biomass can be found in the observation that elements are stored more in sediment and roots. The outcome of the present study shows that the rate of increase of elements in trees (leaves and roots) was less as compared to sediments, where the elemental concentration increased considerably with time. Elemental concentration comparison within three age classes showed that C, N, and S were significantly different in all three types of samples. The δ15N ratios showed positive values in all six compartments which supported the concept that the δ15N ratio could not be observed in N concentration in this study. The δ13C values showed more negative values in all six compartments which represented less salinity and a freshwater intake. The S, P, and heavy metals concentrations were high. The concentrations of Cd, P, N, C, and S in the sediment influenced variations in four compartments in accordance with the three mangrove age groups. The results of this study can be utilized to create management plans for MMFR and conduct risk assessments of the elements’ concentration in sediment.
Forest–Fruticulture Conversion Alters Soil Traits and Soil Organic Matter Compartments
Authors: Enck Bruna Firmino , Campos Milton Cesar Costa , Pereira Marcos Gervásio , de Souza Fernando Gomes , Santos Otavio Augusto Queiroz , Diniz Yan Vidal de Figueiredo Gomes , Martins Thalita Silva , Cunha José Mauricio , Lima Alan Ferreira Leite de , Souza Tancredo Augusto Feitosa de
Published: October 2022

Fruticulture in the Amazonian Rainforest is one of the main causes of deforestation, biodiversity loss, and soil erosion. Fruticulture plays a key role in the soil traits and soil organic matter (SOM) compartments by altering the soil ecosystem. Our aim was to assess the influence of Forest–Fruticulture conversion on soil traits, and SOM fractions in Brazil’s Legal Amazon. The experiment was carried out in field conditions using four land uses as main treatments: Bixa orellana, Theobroma grandiflorum, Paullinia cupana, and the Amazon Rainforest. The soil physicochemical traits were analyzed using samples that were collected from 0–5, 5–10, and 10–20 cm soil depth by using grids (10 × 10 m) with 36 sampling points. Our results showed that the Fruticulture promoted an increase in bulk density, GMD, aggregate diameter, soil porosity, gravimetric moisture, sand, clay, carbon associated with humic acid, and, the sum of bases (K+, Ca2+, and Mg2+), while the Amazon Rainforest showed the highest values of silt, soil P content, SOC, p-SOC, m-SOC, carbon associated with fulvic acid, humine, and soil C stock. Overall, the fruticulture farming systems have negative effects on SOM compartments. The results of our study highlight the importance of considering fruticulture with endemic plant species by promoting soil fertility and soil aggregation.
The Recruitment of the Recalcitrant-Seeded Cryptocarya alba (Mol.) Looser, Established via Direct Seeding Is Mainly Affected by the Seed Source and Forest Cover
Authors: Magni Carlos R. , Saavedra Nicole , Espinoza Sergio E. , Yáñez Marco A. , Quiroz Iván , Faúndez Ángela , Grez Iván , Martinez-Herrera Eduardo
Published: October 2022

Natural regeneration of recalcitrant-seeded tree species is strongly limited in Mediterranean-type climate zones due to increasing droughts imposed by climate change. Direct seeding can be a low-cost alternative to seedling establishment, but there is still limited information for some species. This study aimed to assess the effects of the seed source and forest cover on the germination and survival of the endemic Cryptocarya alba Mol. established through direct seeding. Three habitat types differing in forest cover were identified within the natural park Reserva Natural Altos de Cantillana, Metropolitan Region, Chile. The forest cover corresponded to open (canopy density <25%), semi-dense (canopy density around 50%), and dense forest (canopy density >75%). All forest cover had C. alba as one of the dominant species. At each habitat type, 38 families from four seed sources (Cuesta La Dormida (CD), Antumapu (AN), Cantillana (CA, local seed source) and Cayumanque (CY)) were directly seeded. Germination (Germin) and survival (Surv) were evaluated weekly during one growing season. There were significant differences between seed sources in Germin and Surv, with means values varying from 7.8% to 37% for Germin and 0% to 20% for Surv. The local seed source CA had the highest values in both traits. A significant variation was also observed between families within seed sources only for Germin. The dense forest cover had the highest Germin (22%) and Surv (55%) results compared to the other forest cover types, which was partially associated with differences in soil moisture, temperature, and bulk density. Due to the most frequent droughts in these Mediterranean-type climate zones, the use of local seeds on dense forest cover is recommended for the direct seeding of the species in the initial recruitment.
The Production of Helianthus Haploids: A Review of Its Current Status and Future Prospects
Authors: Blinkov Andrey O. , Varlamova Nataliya V. , Kurenina Ludmila V. , Khaliluev Marat R.
Published: October 2022

The genus Helianthus comprises 52 species and 19 subspecies, with the cultivated sunflower (Helianthus annuus L.) representing one of the most important oilseed crops in the world, which is also of value for fodder and technical purposes. Currently, the leading direction in sunflower breeding is to produce highly effective heterosis F1 hybrids with increased resistance to biotic and abiotic stresses. The production of inbred parental lines via repeated self-pollination takes 4–8 years, and the creation of a commercial hybrid can take as long as 10 years. However, the use of doubled haploid technology allows for the obtainment of inbred lines in one generation, shortening the time needed for hybrid production. Moreover, it allows for the introgression of the valuable genes present in the wild Helianthus species into cultivated sunflowers. Additionally, this technology makes it possible to manipulate the ploidy level, thereby restoring fertility in interspecific hybridization. This review systematizes and analyzes the knowledge available thus far about the production of haploid and dihaploid Helianthus plants using male (isolated anther and microspore cultures) and female (unpollinated ovaries and ovules culture) gametophytes, as well as by induced parthenogenesis using γ-irradiated pollen and interspecific hybridization. The genetic, physiological, and physical factors influencing the efficiency of haploid plant production are considered. A special section focuses on the approaches used to double a haploid chromosome set and the direct and indirect methods for determining the ploidy level. The current analyzed data on the successful application of haploid sunflower plants in breeding are summarized.
Leaf Photosynthetic and Functional Traits of Grassland Dominant Species in Response to Nutrient Addition on the Chinese Loess Plateau
Authors: Jin Yuan , Lai Shuaibin , Chen Zhifei , Jian Chunxia , Zhou Junjie , Niu Furong , Xu Bingcheng
Published: October 2022

Leaf photosynthetic and functional traits of dominant species are important for understanding grassland community dynamics under imbalanced nitrogen (N) and phosphorus (P) inputs. Here, the effects of N (N0, N50, and N100, corresponding to 0, 50, and 100 kg ha−1 yr−1, respectively) or/and P additions (P0, P40, and P80, corresponding to 0, 40, and 80 kg ha–1 yr–1) on photosynthetic characteristics and leaf economic traits of three dominant species (two grasses: Bothriochloa ischaemum and Stipa bungeana; a leguminous subshrub: Lespedeza davurica) were investigated in a semiarid grassland community on the Loess Plateau of China. Results showed that, after a three-year N addition, all three species had higher specific leaf area (SLA), leaf chlorophyll content (SPAD value), maximum net photosynthetic rate (PNmax), and leaf instantaneous water use efficiency (WUE), while also having a lower leaf dry matter content (LDMC). The two grasses, B. ischaemum and S. bungeana, showed greater increases in PNmax and SLA than the subshrub L. davurica. P addition alone had no noticeable effect on the PNmax of the two grasses while it significantly increased the PNmax of L. davurica. There was an evident synergetic effect of the addition of N and P combined on photosynthetic traits and most leaf economic traits in the three species. All species had relatively high PNmax and SLA under the addition of N50 combined with P40. Overall, this study suggests that N and P addition shifted leaf economic traits towards a greater light harvesting ability and, thus, elevated photosynthesis in the three dominant species of a semiarid grassland community, and this was achieved by species–specific responses in leaf functional traits. These results may provide insights into grassland restoration and the assessment of community development in the context of atmospheric N deposition and intensive agricultural fertilization.
Analysis of the Impact of Environmental and Agronomic Variables on Agronomic Parameters in Soybean Cultivation Based on Long-Term Data
Authors: Wójcik-Gront Elżbieta , Gozdowski Dariusz , Derejko Adriana , Pudełko Rafał
Published: October 2022

Soybean (Glycine max (L.) Merr.) is a species of relatively little economic importance in Central and Eastern Europe, including Poland. Due to its popularity for the production of soybean oil, livestock feed, and human food, soybeans are a widely cultivated agricultural crop in the world. The aim of the presented research is to determine the most important agronomic and environmental variables in soybean production in Central and Eastern Europe. This work used a dataset from the Polish Post-Registration Variety Testing System in multi-environmental trials from the years 2012–2021. Variables classified for crop management included doses of mineral fertilizers (N, P, and K) and herbicides, sowing, and the type of previous crops. The environment was also included in the analysis through soil and weather characteristics using climatic water balance (CWB). The analysis was performed using multiple linear regression models and regression trees. It found that the variability of the soybean yield depended mainly on water available to plants and physical soil properties. This means that environmental variables have a stronger effect in comparison to crop management variables. The effect of the nutrients applied in the fields was relatively weak and only important in the case of phosphorus. Other variables which characterize crop management (including sowing date, previous crop, and plant protection using pesticides) have a weak effect on grain yield and yield-related traits variability. As there are not many studies on soybean cultivation in Poland, this work might be used as an introduction to research on soybean management in a hemiboreal climate.
Split-Ubiquitin Two-Hybrid Screen for Proteins Interacting with slToc159-1 and slToc159-2, Two Chloroplast Preprotein Import Receptors in Tomato (Solanum lycopersicum)
Authors: Wang Qi , Yue Jiang , Zhang Chaozhong , Yan Jianmin
Published: October 2022

The post-translational import of nuclear-encoded chloroplast preproteins is critical for chloroplast biogenesis, and the Toc159 family of proteins is the receptor for this process. Our previous work identified and analyzed the Toc GTPase in tomato; however, the tomato-specific transport substrate for Toc159 is still unknown, which limits the study of the function of the TOC receptor in tomato. In this study, we expand the number of preprotein substrates of slToc159 receptor family members using slToc159-1 and slToc159-2 as bait via a split-ubiquitin yeast two-hybrid membrane system. Forty-one specific substrates were identified in tomato for the first time. Using slToc159-1GM and slToc159-2GM as bait, we compared the affinity of the two bait proteins, with and without the A domain, to the precursor protein, which suggested that the A domain endowed the proproteins with subclass specificity. The presence of the A domain enhanced the interaction intensity of slToc159-1 with the photosynthetic preprotein but decreased the interaction intensity of slToc159-2 with the photosynthetic preprotein. Similarly, the presence of the A domain also altered the affinity of slToc159 to non-photosynthetic preproteins. Bimolecular fluorescence complementation (BiFC) analysis showed that A domain had the ability to recognize the preprotein, and the interaction occurred in the chloroplast. Further, the localization of the A domain in Arabidopsis protoplasts showed that the A domain did not contain chloroplast membrane targeting signals. Our data demonstrate the importance of a highly non-conserved A domain, which endows the slToc159 receptor with specificity for different protein types. However, the domain containing the information on targeting the chloroplast needs further study.
Influence of Tree Species and Size on Bark Browsing by Large Wild Herbivores
Authors: Konôpka Bohdan , Šebeň Vladimír , Pajtík Jozef , Shipley Lisa A.
Published: October 2022

Although an important part of the ecosystem, large wild herbivores (LWH), especially red deer (Cervus elaphus L.), cause significant damage to economically valuable timber in forests of Central Europe. Recent work has demonstrated that less valuable softwood broadleaved trees can act as “biological control” that helps reduce bark browsing on more valuable trees in a mixed stand. To better understand the factors that influence how much bark area and mass are removed by LWH from these broadleaved trees, we took advantage of a novel “natural” experiment that occurred after a breach in a herbivory exclosure surrounding a 10-year old mixed broadleaved/conifer stand in the Western Carpathians in north-western Slovakia. We measured the area of old (up to 2 years previously) and new browsed patches on stems of common aspen (Populus tremula L.), common rowan (Sorbus aucuparia L.) and goat willow (Salix caprea L.), and their position along the vertical profile of the stem. The browsed bark area (cm2) was then converted to the bark mass (g) removed and the proportion of browsed bark to total bark (%) using conversion equations. Our models demonstrated that the amount of bark removed was influenced by tree species, stem diameter, age of browsing (old vs. new), and stem section along the vertical profile. LWH removed the most bark area from willow but the most bark mass from aspen because aspen had thicker bark than the other tree species. Bark browsing was greater on trees > 6 cm basal diameter. The distribution of bark browsing along the vertical profile was symmetrical (unimodal) with maximum intensity at 101–125 cm from the ground, which corresponds with the height most optimal for feeding by red deer. However, previous browsing in 2019 and 2020 caused new browsing on willow in 2021 to be focused in stem sections lower (51–75 cm) and higher (126–150 cm) than that optima. By quantifying browsing patterns and the amount of bark that is accessible to LWH for forage on the most attractive softwood broadleaved trees, our work will contribute to developing better methods for protecting commercially important species such as European beech (Fagus sylvatica L.) and Norway spruce (Picea abies L. Karst.) in areas of Central Europe that are greatly affected by increasing population density of LWH, especially red deer.
Chickpea (Cicer arietinum L.) Biology and Biotechnology: From Domestication to Biofortification and Biopharming
Authors: Koul Bhupendra , Sharma Komal , Sehgal Vrinda , Yadav Dhananjay , Mishra Meerambika , Bharadwaj Chellapilla
Published: October 2022

Chickpea (Cicer arietinum L.), the world’s second most consumed legume crop, is cultivated in more than 50 countries around the world. It is a boon for diabetics and is an excellent source of important nutrients such as vitamins A, C, E, K, B1–B3, B5, B6, B9 and minerals (Fe, Zn, Mg and Ca) which all have beneficial effects on human health. By 2050, the world population can cross 9 billion, and in order to feed the teaming millions, chickpea production should also be increased, as it is a healthy alternative to wheat flour and a boon for diabetics. Moreover, it is an important legume that is crucial for food, nutrition, and health security and the livelihood of the small-scale farmers with poor resources, in developing countries. Although marvelous improvement has been made in the development of biotic and abiotic stress-resistant varieties, still there are many lacunae, and to fulfill that, the incorporation of genomic technologies in chickpea breeding (genomics-assisted breeding, high-throughput and precise-phenotyping and implementation of novel breeding strategies) will facilitate the researchers in developing high yielding, climate resilient, water use efficient, salt-tolerant, insect/pathogen resistant varieties, acceptable to farmers, consumers, and industries. This review focuses on the origin and distribution, nutritional profile, genomic studies, and recent updates on crop improvement strategies for combating abiotic and biotic stresses in chickpea.
Biotechnological Intervention and Secondary Metabolite Production in Centella asiatica L.
Authors: Ganie Irfan Bashir , Ahmad Zishan , Shahzad Anwar , Zaushintsena Alexandra , Neverova Olga , Ivanova Svetlana , Wasi Adla , Tahseen Sabaha
Published: October 2022

Centella asiatica L., commonly known as Gotu kola, Indian pennywort, and Asiatic pennyworts, is an herbaceous perennial plant that belongs to the family Apiaceae and has long been used in the traditional medicine system. The plant is known to produce a wide range of active metabolites such as triterpenoids including asiatic acid, asiaticoside, brahmoside, and madecassic acid along with other constituents including centellose, centelloside, and madecassoside, etc., which show immense pharmacological activity. Due to its beneficial role in neuroprotection activity, the plant has been considered as a brain tonic. However, limited cultivation, poor seed viability with low germination rate, and overexploitation for decades have led to severe depletion and threatened its wild stocks. The present review aimed to provide up-to-date information on biotechnological tools applied to this endangered medicinal plant for its in vitro propagation, direct or indirect regeneration, synthetic seed production, strategies for secondary metabolite productions including different elicitors. In addition, a proposed mechanism for the biosynthesis of triterpenoids is also discussed.
Plasma Deposition to Improve Barrier Performance of Biodegradable and Recyclable Substrates Intended for Food Packaging
Authors: Vassallo Espedito , Pedroni Matteo , Aloisio Marco , Chen Hao , Firpo Giuseppe , Pietralunga Silvia Maria , Ripamonti Dario
Published: October 2022

The extensive application of biodegradable polymers in the food packaging industries was partially limited due to poor barrier performances. In the present work, we investigated the improvement of oxygen barrier performances by means of the deposition of a few nanometres of SiOx coatings on Poly(butylene succinate) (PBS) films. The coated samples produced by the plasma-enhanced chemical vapor deposition technique were tested in terms of morphology and composition of the surface and barrier properties. Barrier performances studied as a function of SiOx thickness were greatly improved and a reduction of at least 99% was achieved for oxygen transmission rate. In order to reduce the formation of residual stress between PBS substrate and SiOx coatings, a proper buffer layer (silicon organic SiOxCyHz) was used.