Training Machines to Identify Species using GBIF-mediated Datasets
Authors: Robertson Tim , Belongie Serge , Adam Hartwig , Kaeser-Chen Christine , Zhang Chenyang , Chuan Tan Kiat , Liu Yulong , Brulé Denis , Deltheil Cédric , Loarie Scott , Van Horn Grant , Mac Aodha Oisin , Beery Sara , Perona Pietro , Copas Kyle , Waller John 
Published: June 2019

Advances in machine vision technology are rapidly enabling new and innovative uses within the field of biodiversity. Computers are now able to use images to identify tens of thousands of species across a wide range of taxonomic groups in real time, notably demonstrated by iNaturalist.org, which suggests species IDs to users (https://www.inaturalist.org/pages/computer_vision_demo) as they create observation records. Soon it will be commonplace to detect species in video feeds or use the camera in a mobile device to search for species-related content on the Internet.

The Global Biodiversity Information Facility (GBIF) has an important role to play in advancing and improving this technology, whether in terms of data, collaboration across teams, or citation practice. But in the short term, the most important role may relate to initiating a cultural shift in accepted practices for the use of GBIF-mediated data for training of artificial intelligence (AI).

“Training datasets” play a critical role in achieving species recognition capability in any machine vision system. These datasets compile representative images containing the explicit, verifiable identifications of the species they include. High-powered computers run algorithms on these training datasets, analysing the imagery and building complex models that characterize defining features for each species or taxonomic group. Researchers can, in turn, apply the resulting models to new images, determining what species or group they likely contain. Current research in machine vision is exploring (a) the use of location and date information to further improve model results, (b) identification methods beyond species-level into attribute, character, trait, or part-level ID, with an eye toward human interpretability, and (c) expertise modeling for improved determination of “research grade” images and metadata.

The GBIF community has amassed one of the largest datasets of labelled species images available on the internet: more than 33 million species occurrence records in GBIF.org have one or more images (https://www.gbif.org/occurrence/gallery). Machine vision models, when integrated into the data collection tools in use across the GBIF network, can improve the user experience. For example, in citizen science applications like iNaturalist, automated species suggestion helps even novice users contribute occurrence records to GBIF.

Perhaps most importantly, GBIF has implemented uniform (and open) data licensing, established guidelines on citation and provided consistent methods for tracking data use through the Digital Object Identifiers (DOI) citation chain. GBIF would like to build on the lessons learned in these activities while striving to assist with this technology research and increase its power and availability.

We envisage an approach as follows:

To assist in developing and refining machine vision models, GBIF plans to provide training datasets, taking effort to ensure license and citation practice are respected. The training datasets will be issued with a DOI, and the contributing datasets will be linked through the DOI citation graph.

To assist application developers, Google and Visipedia plan to build and publish openly-licensed models and tutorials for how to adapt them for localized use.

Together we will strive to ensure that data is being used responsibly and transparently, to close the gap between machine vision scientists, application developers, and users and to share taxonomic trees capturing the taxon rank to which machine vision models can identify with confidence based on an image’s visual characteristics.

To assist in developing and refining machine vision models, GBIF plans to provide training datasets, taking effort to ensure license and citation practice are respected. The training datasets will be issued with a DOI, and the contributing datasets will be linked through the DOI citation graph.

To assist application developers, Google and Visipedia plan to build and publish openly-licensed models and tutorials for how to adapt them for localized use.

Together we will strive to ensure that data is being used responsibly and transparently, to close the gap between machine vision scientists, application developers, and users and to share taxonomic trees capturing the taxon rank to which machine vision models can identify with confidence based on an image’s visual characteristics.