bluuebunny/crossref_metadata_2025 huggingface dataset:
Figure S3 from Microenvironmental Cues Determine Tumor Cell Susceptibility to Neutrophil Cytotoxicity
Authors: Gershkovitz Maya , Fainsod-Levi Tanya , Khawaled Saleh , Shaul Merav E. , Sionov Ronit V. , Cohen-Daniel Leonor , Aqeilan Rami I. , Shaul Yoav D. , Fridlender Zvi G. , Granot Zvi
Published: April 2023

Supplemental Figure S3. Inverse correlation between E-Cadherin expression and TRPM2 expression in primary and metastatic 4T1 tumors. Immunofluorescent staining of TRPM2 (red) and E-Cadherin (green) in 4T1 primary tumor (A) in a lung metastatic 4T1 tumor (B).
Video S7 from ΔNp63-Regulated Epithelial-to-Mesenchymal Transition State Heterogeneity Confers a Leader–Follower Relationship That Drives Collective Invasion
Authors: Westcott Jill M. , Camacho Sharon , Nasir Apsra , Huysman Molly E. , Rahhal Raneen , Dang Tuyen T. , Riegel Anna T. , Brekken Rolf A. , Pearson Gray W.
Published: April 2023

Live imaging of explants containing MCFDCISO cells (H2B:mCherry, red, nuclei) with or without 578T cells (H2B:GFP, green, nuclei) showing cell motility.
Supplementary Materials and Methods from Gain of HIF1 Activity and Loss of miRNA let-7d Promote Breast Cancer Metastasis to the Brain via the PDGF/PDGFR Axis
Authors: Wyss Christof B. , Duffey Nathalie , Peyvandi Sanam , Barras David , Martinez Usatorre Amaïa , Coquoz Oriana , Romero Pedro , Delorenzi Mauro , Lorusso Girieca , Rüegg Curzio
Published: April 2023

This file contains all the materials and methods that were not included in the main text.
Supplementary Data from A Transcriptome-Wide Association Study Identifies Candidate Susceptibility Genes for Pancreatic Cancer Risk
Authors: Liu Duo , Zhou Dan , Sun Yanfa , Zhu Jingjing , Ghoneim Dalia , Wu Chong , Yao Qizhi , Gamazon Eric R. , Cox Nancy J. , Wu Lang
Published: April 2023

Five supplementary tables and one supplementary figure. Supplementary Table 1. Performance of gene expression prediction models built. Supplementary Table 2. Twenty-five lambda pairs and the corresponding prediction performance in the tuning set for prediction models of the 13 associated genes. Supplementary Table 3. Associations of age, sex, top principle components, and assessed pancreatic cancer risk variants with pancreatic cancer risk in conditional analyses of 13 associated genes. Supplementary Table 4. The functions of RCCD1, and CFDP1 and their reported links with human cancers. Supplementary Table 5. Associations of genes identified in Zhong et al. with pancreatic cancer risk in the present study. Supplementary Figure 1. The flowchart of quality control and prediction model training in the reference dataset.
Supplementary Figure S8 from Blocking Angiopoietin-2 Promotes Vascular Damage and Growth Inhibition in Mouse Tumors Treated with Small Doses of Radiation
Authors: Kallio Pauliina , Jokinen Elina , Högström Jenny , Das Suvendu , Heino Sarika , Lähde Marianne , Brodkin Jefim , Korhonen Emilia A. , Alitalo Kari
Published: April 2023

Supplementary Figure S8
Supplemental Table S2 from Reactive Oxygen Species Drive Proliferation in Acute Myeloid Leukemia via the Glycolytic Regulator PFKFB3
Authors: Robinson Andrew J. , Hopkins Goitseone L. , Rastogi Namrata , Hodges Marie , Doyle Michelle , Davies Sara , Hole Paul S. , Omidvar Nader , Darley Richard L. , Tonks Alex
Published: April 2023

Statistically significant biochemicals profiled in this study.
Supplementary Tables from Functional Precision Medicine Identifies New Therapeutic Candidates for Medulloblastoma
Authors: Rusert Jessica M. , Juarez Edwin F. , Brabetz Sebastian , Jensen James , Garancher Alexandra , Chau Lianne Q. , Tacheva-Grigorova Silvia K. , Wahab Sameerah , Udaka Yoko T. , Finlay Darren , Seker-Cin Huriye , Reardon Brendan , Gröbner Susanne , Serrano Jonathan , Ecker Jonas , Qi Lin , Kogiso Mari , Du Yuchen , Baxter Patricia A. , Henderson Jacob J. , Berens Michael E. , Vuori Kristiina , Milde Till , Cho Yoon-Jae , Li Xiao-Nan , Olson James M. , Reyes Iris , Snuderl Matija , Wong Terence C. , Dimmock David P. , Nahas Shareef A. , Malicki Denise , Crawford John R. , Levy Michael L. , Van Allen Eliezer M. , Pfister Stefan M. , Tamayo Pablo , Kool Marcel , Mesirov Jill P. , Wechsler-Reya Robert J.
Published: April 2023

Supplementary Tables 1-11
Supplementary Data from Epigenetic Targeting of TERT-Associated Gene Expression Signature in Human Neuroblastoma with TERT Overexpression
Authors: Huang Min , Zeki Jasmine , Sumarsono Nathan , Coles Garry L. , Taylor Jordan S. , Danzer Enrico , Bruzoni Matias , Hazard Florette K. , Lacayo Norman J. , Sakamoto Kathleen M. , Dunn James C.Y. , Spunt Sheri L. , Chiu Bill
Published: April 2023

Supplementary Fig. S1. Elevated mRNA expression of TERT and TERT-associated genes in NB with TERT gene rearrangement. Supplementary Fig. S2. Effects of dinaciclib on genome-wide chromatin occupancy of epigenetic modulators in CLB-GA cells. Supplementary Fig. S3: C-Myc and MYCN protein expression in four NB cell lines. Supplementary Fig. S4: Effects of dinaciclib on the chromatin occupancy of epigenetic modulators at Dvl2, AURKA, and AURKB and in CLB-GA cells. Supplementary Fig. S5. Association of overexpression of FEN1, BIRC5, and UHRF1 with poor prognosis and effects of dinaciclib on chromatin occupancy of epigenetic modulators in CLB-GA cells. Supplementary Fig. S6. JQ1 sensitive Brd4 binding profiles in OCI-AML3 cells. Supplementary Fig. S7. JQ1 and dinaciclib are synergistic or additive in inducing cytotoxicity in NB cell lines. Supplementary Fig. S8. Combination index (CI) values for synergy experiment combining Dinaciclib with Brd4 inhibitor JQ1. Supplementary Fig. S9. Effects of dinaciclib on phosphorylation of Rb in CLB-GA and Kelly cells. Supplementary table S1. Primer sequences used in ChIP-qPCR and real-time RT-PCR analysis. Supplementary table 2. Gene sets enriched in NB patients with TERT gene rearrangement (n=32) versus without TERT gene rearrangement (n=278) within MYCN non-amplified NB of Tumor Neuroblastoma (TERT)-Fischer-394-custom. Supplementary table 3. Gene sets enriched in NB patients with high versus low TERT within Tumor Neuroblastoma Gene-TARGET-161. Supplementary table 4: Information on patient samples used in this study.
Table S1 from Normal Breast-Derived Epithelial Cells with Luminal and Intrinsic Subtype-Enriched Gene Expression Document Interindividual Differences in Their Differentiation Cascade
Authors: Kumar Brijesh , Prasad Mayuri , Bhat-Nakshatri Poornima , Anjanappa Manjushree , Kalra Maitri , Marino Natascia , Storniolo Anna Maria , Rao Xi , Liu Sheng , Wan Jun , Liu Yunlong , Nakshatri Harikrishna
Published: April 2023

Gene expression analyses of KTB cell lines and IPA analyses
Supplementary Data from The Synthetic Small Molecule FL3 Combats Intestinal Tumorigenesis via Axin1-Mediated Inhibition of Wnt/β-Catenin Signaling
Authors: Jackson Dakota N. , Alula Kibrom M. , Delgado-Deida Yaritza , Tabti Redouane , Turner Kevin , Wang Xuan , Venuprasad K. , Souza Rhonda F. , Désaubry Laurent , Theiss Arianne L.
Published: April 2023

PHB1 expression is required for FL3 anti-tumorigenic action in the colon
Figure S4 from Genomic and Epigenomic Landscaping Defines New Therapeutic Targets for Adenosquamous Carcinoma of the Pancreas
Authors: Lenkiewicz Elizabeth , Malasi Smriti , Hogenson Tara L. , Flores Luis F. , Barham Whitney , Phillips William J. , Roesler Alexander S. , Chambers Kendall R. , Rajbhandari Nirakar , Hayashi Akimasa , Antal Corina E. , Downes Michael , Grandgenett Paul M. , Hollingsworth Michael A. , Cridebring Derek , Xiong Yuning , Lee Jeong-Heon , Ye Zhenqing , Yan Huihuang , Hernandez Matthew C. , Leiting Jennifer L. , Evans Ronald M. , Ordog Tamas , Truty Mark J. , Borad Mitesh J. , Reya Tannishtha , Von Hoff Daniel D. , Fernandez-Zapico Martin E. , Barrett Michael T.
Published: April 2023

Somatic mutations and homozygous deletions targeting chromatin regulators in ASCP genomes. IGV views of A) TP53Y205S and MSL2C44W in 3.8N population sorted from primary tumor 9R. B) KRASG12D and KANSL1Q396X in flow sorted tumor fraction in PAX217. Sorted 2.0N fraction was used as a patient matched normal for 9R while patient matched lymphocytes were used as a source of normal DNA for PAX217. Homozygous deletions (log2 ratio <-3.0) targeting ASXL2 and ARID2 in C) PENN040 and D) PAX208.
Supplementary Data from Breast Cancer Cell Detection and Characterization from Breast Milk–Derived Cells
Authors: Bhat-Nakshatri Poornima , Kumar Brijesh , Simpson Ed , Ludwig Kandice K. , Cox Mary L. , Gao Hongyu , Liu Yunlong , Nakshatri Harikrishna
Published: April 2023

Supplementary figures 1-4
Supplementary Table 2 from Hormonal Regulation of Semaphorin 7a in ER+ Breast Cancer Drives Therapeutic Resistance
Authors: Crump Lyndsey S. , Wyatt Garhett L. , Rutherford Taylor R. , Richer Jennifer K. , Porter Weston W. , Lyons Traci R.
Published: April 2023

Oncomine analysis of SEMA7A expression with ER/PR biomarker status, grade, and stage
Table S7 from SCIRT lncRNA Restrains Tumorigenesis by Opposing Transcriptional Programs of Tumor-Initiating Cells
Authors: Zagorac Sladjana , de Giorgio Alex , Dabrowska Aleksandra , Kalisz Mark , Casas-Vila Nuria , Cathcart Paul , Yiu Angela , Ottaviani Silvia , Degani Neta , Lombardo Ylenia , Tweedie Alistair , Nissan Tracy , Vance Keith W. , Ulitsky Igor , Stebbing Justin , Castellano Leandro
Published: April 2023

Top 100 gene significantly up-regulated upon siSCIRT treatment (Overlap between siSCIRT #1 and siSCIRT #2). Genes are ranked from the most up-regulated to the least up-regulated.
Table S6 from SCIRT lncRNA Restrains Tumorigenesis by Opposing Transcriptional Programs of Tumor-Initiating Cells
Authors: Zagorac Sladjana , de Giorgio Alex , Dabrowska Aleksandra , Kalisz Mark , Casas-Vila Nuria , Cathcart Paul , Yiu Angela , Ottaviani Silvia , Degani Neta , Lombardo Ylenia , Tweedie Alistair , Nissan Tracy , Vance Keith W. , Ulitsky Igor , Stebbing Justin , Castellano Leandro
Published: April 2023

Significant marker genes of cluster 3 after scRNA-seq analysis of Breast Cancer primary samples
Supplementary Data from SCIRT lncRNA Restrains Tumorigenesis by Opposing Transcriptional Programs of Tumor-Initiating Cells
Authors: Zagorac Sladjana , de Giorgio Alex , Dabrowska Aleksandra , Kalisz Mark , Casas-Vila Nuria , Cathcart Paul , Yiu Angela , Ottaviani Silvia , Degani Neta , Lombardo Ylenia , Tweedie Alistair , Nissan Tracy , Vance Keith W. , Ulitsky Igor , Stebbing Justin , Castellano Leandro
Published: April 2023

Supplementary Figures 1-15
Supplementary Figures and tables from Robust p53 Stabilization Is Dispensable for Its Activation and Tumor Suppressor Function
Authors: Kon Ning , Churchill Michael , Li Huan , Mukherjee Siddhartha , Manfredi James J. , Gu Wei
Published: April 2023

Additional data to support the main conclusion. Supplemental Figures 1-7 and tables 1-2.
Supplementary Figures S1-S5 from Altered Mitochondria Functionality Defines a Metastatic Cell State in Lung Cancer and Creates an Exploitable Vulnerability
Authors: Chuang Chen-Hua , Dorsch Madeleine , Dujardin Philip , Silas Sukrit , Ueffing Kristina , Hölken Johanna M. , Yang Dian , Winslow Monte M. , Grüner Barbara M.
Published: April 2023

Supplementary Figures S1-S5
Supplementary Figure 5 from “3G” Trial: An RNA Editing Signature to Guide Gastric Cancer Chemotherapy
Authors: An Omer , Song Yangyang , Ke Xinyu , So Jimmy Bok-Yan , Sundar Raghav , Yang Henry , Rha Sun Young , Lee Ming Hui , Tay Su Ting , Ong Xuewen , Tan Angie Lay Keng , Ng Matthew Chau Hsien , Tantoso Erwin , Chen Leilei , Tan Patrick , Yong Wei Peng
Published: April 2023

Supplementary Figure 5
Supplementary Figure 1 from “3G” Trial: An RNA Editing Signature to Guide Gastric Cancer Chemotherapy
Authors: An Omer , Song Yangyang , Ke Xinyu , So Jimmy Bok-Yan , Sundar Raghav , Yang Henry , Rha Sun Young , Lee Ming Hui , Tay Su Ting , Ong Xuewen , Tan Angie Lay Keng , Ng Matthew Chau Hsien , Tantoso Erwin , Chen Leilei , Tan Patrick , Yong Wei Peng
Published: April 2023

Supplementary Figure 1
Supplementary Data from Dual Inhibition of MEK and AXL Targets Tumor Cell Heterogeneity and Prevents Resistant Outgrowth Mediated by the Epithelial-to-Mesenchymal Transition in NSCLC
Authors: Konen Jessica M. , Rodriguez B. Leticia , Padhye Aparna , Ochieng Joshua K. , Gibson Laura , Diao Lixia , Fowlkes Natalie W. , Fradette Jared J. , Peng David H. , Cardnell Robert J. , Kovacs Jeffrey J. , Wang Jing , Byers Lauren A. , Gibbons Don L.
Published: April 2023

Supplementary Materials and Methods
Table S3 from A GRN Autocrine-Dependent FAM135B/AKT/mTOR Feedforward Loop Promotes Esophageal Squamous Cell Carcinoma Progression
Authors: Dong Dezuo , Zhang Weimin , Xiao Wenchang , Wu Qingnan , Cao Yiren , Gao Xiaohan , Huang Lijie , Wang Yan , Chen Jie , Wang Weihu , Zhan Qimin
Published: April 2023

Univariate and multivariable Cox regression analysis of overall survival (n=95)
Table S2 from A GRN Autocrine-Dependent FAM135B/AKT/mTOR Feedforward Loop Promotes Esophageal Squamous Cell Carcinoma Progression
Authors: Dong Dezuo , Zhang Weimin , Xiao Wenchang , Wu Qingnan , Cao Yiren , Gao Xiaohan , Huang Lijie , Wang Yan , Chen Jie , Wang Weihu , Zhan Qimin
Published: April 2023

Expression pattern of FAM135B protein in ESCC and adjacent normal tissues
Supplementary Data from Racial/Ethnic Disparities in All-Cause Mortality among Patients Diagnosed with Triple-Negative Breast Cancer
Authors: Wang Fei , Zheng Wei , Bailey Christina E. , Mayer Ingrid A. , Pietenpol Jennifer A. , Shu Xiao-Ou
Published: April 2023

Supplementary Data. Supplementary Table 1: Characteristics of Female Patients with Triple Negative Breast Cancer by Race/ethnicity. Supplementary Table 2: HRs (95%CI) for 5-year Mortality Associated with Race/ethnicity by Stage Among Female Patients with TNBC. Supplementary Table 3: HRs (95%CI) for 5-year Mortality Associated with Race/ethnicity Among Female Patients with TNBC Stratified by Age Groups. Supplementary Table 4: HRs (95%CI) for 3-year Mortality Associated with Race/ethnicity by Types and Regions of Facility Among Female Patients with TNBC. Supplementary Figure 1: Flow chart of the study.
Supplementary Figure Legends from Folate Receptor Beta Designates Immunosuppressive Tumor-Associated Myeloid Cells That Can Be Reprogrammed with Folate-Targeted Drugs
Authors: Cresswell Gregory M. , Wang Bingbing , Kischuk Erin M. , Broman Meaghan M. , Alfar Rami A. , Vickman Renee E. , Dimitrov Dimiter S. , Kularatne Sumith A. , Sundaram Chandru P. , Singhal Sunil , Eruslanov Evgeniy B. , Crist Scott A. , Elzey Bennett D. , Ratliff Timothy L. , Low Philip S.
Published: April 2023

Figure legends for supplemental figures
Supplementary Table S1 from Protein Arginine Methyltransferase 5 Promotes pICln-Dependent Androgen Receptor Transcription in Castration-Resistant Prostate Cancer
Authors: Beketova Elena , Fang Shuyi , Owens Jake L. , Liu Sheng , Chen Xufeng , Zhang Qingfu , Asberry Andrew M. , Deng Xuehong , Malola Jonathan , Huang Jiaoti , Li Chenglong , Pili Roberto , Elzey Bennett D. , Ratliff Timothy L. , Wan Jun , Hu Chang-Deng
Published: April 2023

Sequences of shRNA and oligonucleotides, antibodies information, datasets information
Figure S1 from Folate Receptor Beta Designates Immunosuppressive Tumor-Associated Myeloid Cells That Can Be Reprogrammed with Folate-Targeted Drugs
Authors: Cresswell Gregory M. , Wang Bingbing , Kischuk Erin M. , Broman Meaghan M. , Alfar Rami A. , Vickman Renee E. , Dimitrov Dimiter S. , Kularatne Sumith A. , Sundaram Chandru P. , Singhal Sunil , Eruslanov Evgeniy B. , Crist Scott A. , Elzey Bennett D. , Ratliff Timothy L. , Low Philip S.
Published: April 2023

supplemental figure 1
Table Supplemental 1 from ATG5-Dependent Autophagy Uncouples T-cell Proliferative and Effector Functions and Separates Graft-versus-Host Disease from Graft-versus-Leukemia
Authors: Oravecz-Wilson Katherine , Rossi Corinne , Zajac Cynthia , Sun Yaping , Li Lu , Decoville Thomas , Fujiwara Hideaki , Kim Stephanie , Peltier Daniel , Reddy Pavan
Published: April 2023

Clinical Scoring of GVHD
Supplementary Table S1-S5 from Enhanced Antitumor Immunity via Endocrine Therapy Prevents Mammary Tumor Relapse and Increases Immune Checkpoint Blockade Sensitivity
Authors: Sequeira Gonzalo R. , Sahores Ana , Dalotto-Moreno Tomás , Perrotta Ramiro M. , Pataccini Gabriela , Vanzulli Silvia I. , Polo María L. , Radisky Derek C. , Sartorius Carol A. , Novaro Virginia , Lamb Caroline A. , Rabinovich Gabriel A. , Salatino Mariana , Lanari Claudia
Published: April 2023

TS1: List of upregulated Gene Ontology biological processes, TS2: List of downregulated Gene Ontology biological processes, TS3: List of normalized differential expressed genes with MFP, TS4: Gene Ontology Biological processes from differential expressed genes, TS5: Upregulated genes implicated in the Inflammatory response.
Figure S4 from ATG5-Dependent Autophagy Uncouples T-cell Proliferative and Effector Functions and Separates Graft-versus-Host Disease from Graft-versus-Leukemia
Authors: Oravecz-Wilson Katherine , Rossi Corinne , Zajac Cynthia , Sun Yaping , Li Lu , Decoville Thomas , Fujiwara Hideaki , Kim Stephanie , Peltier Daniel , Reddy Pavan
Published: April 2023

Fig S4 has WB for perforin/granzyme in activated cells with and without inhibitors
Figure S2 from ATG5-Dependent Autophagy Uncouples T-cell Proliferative and Effector Functions and Separates Graft-versus-Host Disease from Graft-versus-Leukemia
Authors: Oravecz-Wilson Katherine , Rossi Corinne , Zajac Cynthia , Sun Yaping , Li Lu , Decoville Thomas , Fujiwara Hideaki , Kim Stephanie , Peltier Daniel , Reddy Pavan
Published: April 2023

Fig S2 has schematic of Cre loxp system used for model, phenotype analysis of cell populations of mouse model along with proliferation assays
Supplementary Movie 1 from KRAS Controls Pancreatic Cancer Cell Lipid Metabolism and Invasive Potential through the Lipase HSL
Authors: Rozeveld Cody N. , Johnson Katherine M. , Zhang Lizhi , Razidlo Gina L.
Published: April 2023

Time lapse video showing lipid droplet turnover in migratory leading-edge tumor cells
Supplementary Data from KRAS Controls Pancreatic Cancer Cell Lipid Metabolism and Invasive Potential through the Lipase HSL
Authors: Rozeveld Cody N. , Johnson Katherine M. , Zhang Lizhi , Razidlo Gina L.
Published: April 2023

5 Supplementary Figures and legends Legends for 2 supplementary movies
Video 1 from Glutamine-Directed Migration of Cancer-Activated Fibroblasts Facilitates Epithelial Tumor Invasion
Authors: Mestre-Farrera Aida , Bruch-Oms Marina , Peña Raúl , Rodríguez-Morató José , Alba-Castellón Lorena , Comerma Laura , Quintela-Fandino Miguel , Duñach Mireia , Baulida Josep , Pozo Óscar J. , García de Herreros Antonio
Published: April 2023

Video showing migration of activated CAFs toward the Gln-rich compartment when cultured in a Gln-concentration gradient (0.2-2 mM)
Supplementary Data from Replication Gaps Underlie BRCA Deficiency and Therapy Response
Authors: Panzarino Nicholas J. , Krais John J. , Cong Ke , Peng Min , Mosqueda Michelle , Nayak Sumeet U. , Bond Samuel M. , Calvo Jennifer A. , Doshi Mihir B. , Bere Matt , Ou Jianhong , Deng Bin , Zhu Lihua J. , Johnson Neil , Cantor Sharon B.
Published: April 2023

Supplemental Figures 1-6. Figure S1: BRCA-deficient cancer cells fail to restrain replication in the presence of stress and ssDNA gaps develop. Figure S2: Replication restraint, depletion, and PDX controls. Figure S3: Depletion of SMARCAL1 or inhibition of MRE11 restores FP, but do not predict patient response and do not suppress ssDNA gaps, which are distinct from fork degradation. Figure S4: Fanconi Anemia Patient Fibroblasts with a RAD51 T131P Mutant Allele (HR Proficient, FP Deficient) Generate ssDNA Gaps, and FP is restored by RADX depletion. Figure S5: Apoptosis and Z-VAD-FMK Controls. Figure S6: Prediction Table of BRCAness and Chemoresponse.
Figure S8 from Identifying Clear Cell Renal Cell Carcinoma Coexpression Networks Associated with Opioid Signaling and Survival
Authors: Scarpa Joseph R. , DiNatale Renzo G. , Mano Roy , Silagy Andrew W. , Kuo Fengshen , Irie Takeshi , McCormick Patrick J. , Fischer Gregory W. , Hakimi A. Ari , Mincer Joshua S.
Published: April 2023

Figure S8. Prediction of drug effects on a survival-associated network in bladder cancer (BLCA).
Supplementary Materials from Activation of Receptor Tyrosine Kinases Mediates Acquired Resistance to MEK Inhibition in Malignant Peripheral Nerve Sheath Tumors
Authors: Wang Jiawan , Pollard Kai , Calizo Ana , Pratilas Christine A.
Published: April 2023

Supplementary Materials shows related Supplementary Methods, Supplementary Tables, Supplementary Figures and Legends, and Supplementary References.
Figure S5 from Identifying Clear Cell Renal Cell Carcinoma Coexpression Networks Associated with Opioid Signaling and Survival
Authors: Scarpa Joseph R. , DiNatale Renzo G. , Mano Roy , Silagy Andrew W. , Kuo Fengshen , Irie Takeshi , McCormick Patrick J. , Fischer Gregory W. , Hakimi A. Ari , Mincer Joshua S.
Published: April 2023

Figure S5. Fisher's exact test overrepresentation between TCGA and MSKCC ccRCC networks.
Figure S3 from Identifying Clear Cell Renal Cell Carcinoma Coexpression Networks Associated with Opioid Signaling and Survival
Authors: Scarpa Joseph R. , DiNatale Renzo G. , Mano Roy , Silagy Andrew W. , Kuo Fengshen , Irie Takeshi , McCormick Patrick J. , Fischer Gregory W. , Hakimi A. Ari , Mincer Joshua S.
Published: April 2023

Figure S3. Tumors with high and low opioid pathway gene expression have differential pathologic stage in ccRCC.
Supplementary file 2 from circIGHG-Induced Epithelial-to-Mesenchymal Transition Promotes Oral Squamous Cell Carcinoma Progression via miR-142-5p/IGF2BP3 Signaling
Authors: Liu Jingpeng , Jiang Xiao , Zou Ailing , Mai Zhaoyi , Huang Zhijie , Sun Liying , Zhao Jianjiang
Published: April 2023

circRNA chip result
Supplementary Data from Loss of Aurora Kinase Signaling Allows Lung Cancer Cells to Adopt Endoreplication and Form Polyploid Giant Cancer Cells That Resist Antimitotic Drugs
Authors: Tagal Vural , Roth Michael G.
Published: April 2023

Supplementary data include "Supplementary Figures S1-S7" and "Supplementary Table S1".
Supplementary Figure 6 from EZH2 Regulates Pancreatic Cancer Subtype Identity and Tumor Progression via Transcriptional Repression of GATA6
Authors: Patil Shilpa , Steuber Benjamin , Kopp Waltraut , Kari Vijayalakshmi , Urbach Laura , Wang Xin , Küffer Stefan , Bohnenberger Hanibal , Spyropoulou Dimitra , Zhang Zhe , Versemann Lennart , Bösherz Mark Sebastian , Brunner Marius , Gaedcke Jochen , Ströbel Philipp , Zhang Jin-San , Neesse Albrecht , Ellenrieder Volker , Singh Shiv K. , Johnsen Steven A. , Hessmann Elisabeth
Published: April 2023

Supplementary Figure 6: GATA6 is critically involved in tumor promoting EZH2 functions
Supplementary Table II from Oncogenic TRIM37 Links Chemoresistance and Metastatic Fate in Triple-Negative Breast Cancer
Authors: Przanowski Piotr , Lou Song , Tihagam Rachisan Djiake , Mondal Tanmoy , Conlan Caroline , Shivange Gururaj , Saltani Ilyas , Singh Chandrajeet , Xing Kun , Morris Benjamin B. , Mayo Marty W. , Teixeira Luis , Lehmann-Che Jacqueline , Tushir-Singh Jogender , Bhatnagar Sanchita
Published: April 2023

Table II: List of primers and shRNA used for qRT-PCR, ChIP and vector construction.
Supplementary Figure 2 from EZH2 Regulates Pancreatic Cancer Subtype Identity and Tumor Progression via Transcriptional Repression of GATA6
Authors: Patil Shilpa , Steuber Benjamin , Kopp Waltraut , Kari Vijayalakshmi , Urbach Laura , Wang Xin , Küffer Stefan , Bohnenberger Hanibal , Spyropoulou Dimitra , Zhang Zhe , Versemann Lennart , Bösherz Mark Sebastian , Brunner Marius , Gaedcke Jochen , Ströbel Philipp , Zhang Jin-San , Neesse Albrecht , Ellenrieder Volker , Singh Shiv K. , Johnsen Steven A. , Hessmann Elisabeth
Published: April 2023

Supplementary Figure 2: EZH2 deficiency drives gene signatures associated with differentiation and a lipogenic metabolic profile
Figure S5 from Oncogenic TRIM37 Links Chemoresistance and Metastatic Fate in Triple-Negative Breast Cancer
Authors: Przanowski Piotr , Lou Song , Tihagam Rachisan Djiake , Mondal Tanmoy , Conlan Caroline , Shivange Gururaj , Saltani Ilyas , Singh Chandrajeet , Xing Kun , Morris Benjamin B. , Mayo Marty W. , Teixeira Luis , Lehmann-Che Jacqueline , Tushir-Singh Jogender , Bhatnagar Sanchita
Published: April 2023

Supplementary Figure 5. TRIM37 causes transcriptional alterations in genes involved in metastasis.
Figure S4 from Oncogenic TRIM37 Links Chemoresistance and Metastatic Fate in Triple-Negative Breast Cancer
Authors: Przanowski Piotr , Lou Song , Tihagam Rachisan Djiake , Mondal Tanmoy , Conlan Caroline , Shivange Gururaj , Saltani Ilyas , Singh Chandrajeet , Xing Kun , Morris Benjamin B. , Mayo Marty W. , Teixeira Luis , Lehmann-Che Jacqueline , Tushir-Singh Jogender , Bhatnagar Sanchita
Published: April 2023

Supplementary Figure 4. Chemotherapy activates ATM/E2F1/STAT axis to upregulate TRIM37 in TNBC.
Figure S2 from Oncogenic TRIM37 Links Chemoresistance and Metastatic Fate in Triple-Negative Breast Cancer
Authors: Przanowski Piotr , Lou Song , Tihagam Rachisan Djiake , Mondal Tanmoy , Conlan Caroline , Shivange Gururaj , Saltani Ilyas , Singh Chandrajeet , Xing Kun , Morris Benjamin B. , Mayo Marty W. , Teixeira Luis , Lehmann-Che Jacqueline , Tushir-Singh Jogender , Bhatnagar Sanchita
Published: April 2023

Supplementary Figure 2: TRIM37-mediated H2A mono-ubiquitination promotes TNBC cell survival following chemotherapy.
Supplementary Table 1 from Myeloid-Derived Suppressor Cells Are a Major Source of Wnt5A in the Melanoma Microenvironment and Depend on Wnt5A for Full Suppressive Activity
Authors: Douglass Stephen M. , Fane Mitchell E. , Sanseviero Emilio , Ecker Brett L. , Kugel Curtis H. , Behera Reeti , Kumar Vinit , Tcyganov Evgenii N. , Yin Xiangfan , Liu Qin , Chhabra Yash , Alicea Gretchen M. , Kuruvilla Rejji , Gabrilovich Dmitry I. , Weeraratna Ashani T.
Published: April 2023

Supplemental Table 1. Antibodies used.
Supplementary Figure 6 from Myeloid-Derived Suppressor Cells Are a Major Source of Wnt5A in the Melanoma Microenvironment and Depend on Wnt5A for Full Suppressive Activity
Authors: Douglass Stephen M. , Fane Mitchell E. , Sanseviero Emilio , Ecker Brett L. , Kugel Curtis H. , Behera Reeti , Kumar Vinit , Tcyganov Evgenii N. , Yin Xiangfan , Liu Qin , Chhabra Yash , Alicea Gretchen M. , Kuruvilla Rejji , Gabrilovich Dmitry I. , Weeraratna Ashani T.
Published: April 2023

Supplementary Figure 6 - rWnt5A Does Not Promote Treg Migration in vitro
Supplementary Figures and Tables from Nucleoporin 210 Serves a Key Scaffold for SMARCB1 in Liver Cancer
Authors: Hong Seong Hwi , Son Keun Hong , Ha Sang Yun , Wee Tae In , Choi Sung Kyung , Won Ji Eun , Han Hee Dong , Ro Youngtae , Park Yeong-Min , Eun Jung Woo , Nam Suk Woo , Han Jeung-Whan , Kang Keunsoo , You Jueng Soo
Published: April 2023

Supplementary Figures and Tables
Supplementary Table S2 from E7386, a Selective Inhibitor of the Interaction between β-Catenin and CBP, Exerts Antitumor Activity in Tumor Models with Activated Canonical Wnt Signaling
Authors: Yamada Kazuhiko , Hori Yusaku , Inoue Satoshi , Yamamoto Yuji , Iso Kentaro , Kamiyama Hiroshi , Yamaguchi Atsumi , Kimura Takayuki , Uesugi Mai , Ito Junichi , Matsuki Masahiro , Nakamoto Kazutaka , Harada Hitoshi , Yoneda Naoki , Takemura Atsushi , Kushida Ikuo , Wakayama Naomi , Kubara Kenji , Kato Yu , Semba Taro , Yokoi Akira , Matsukura Masayuki , Odagami Takenao , Iwata Masao , Tsuruoka Akihiko , Uenaka Toshimitsu , Matsui Junji , Matsushima Tomohiro , Nomoto Kenichi , Kouji Hiroyuki , Owa Takashi , Funahashi Yasuhiro , Ozawa Yoichi
Published: April 2023

The list of DEGs by RNA-Seq analysis
Table S2 from Targeting CDK12 for Cancer Therapy: Function, Mechanism, and Drug Discovery
Authors: Liu Hui , Liu Kangdong , Dong Zigang
Published: April 2023

Inhibitors of CDKs
Supplementary Table S1 from Cancers from Novel Pole-Mutant Mouse Models Provide Insights into Polymerase-Mediated Hypermutagenesis and Immune Checkpoint Blockade
Authors: Galati Melissa A. , Hodel Karl P. , Gams Miki S. , Sudhaman Sumedha , Bridge Taylor , Zahurancik Walter J. , Ungerleider Nathan A. , Park Vivian S. , Ercan Ayse B. , Joksimovic Lazar , Siddiqui Iram , Siddaway Robert , Edwards Melissa , de Borja Richard , Elshaer Dana , Chung Jiil , Forster Victoria J. , Nunes Nuno M. , Aronson Melyssa , Wang Xia , Ramdas Jagadeesh , Seeley Andrea , Sarosiek Tomasz , Dunn Gavin P. , Byrd Jonathan N. , Mordechai Oz , Durno Carol , Martin Alberto , Shlien Adam , Bouffet Eric , Suo Zucai , Jackson James G. , Hawkins Cynthia E. , Guidos Cynthia J. , Pursell Zachary F. , Tabori Uri
Published: April 2023

CyTOF panel antibodies
Supplementary Data from MEK Inhibition Remodels the Immune Landscape of Mutant KRAS Tumors to Overcome Resistance to PARP and Immune Checkpoint Inhibitors
Authors: Yang Bin , Li Xi , Fu Yu , Guo Ensong , Ye Youqiong , Li Fuxia , Liu Si , Xiao Rourou , Liu Chen , Lu Funian , Huang Jia , Qin Tianyu , Han Leng , Peng Guang , Mills Gordon B. , Sun Chaoyang , Chen Gang
Published: April 2023

Unmarked Supplementary Figures and Tables
Supplementary Tables 1-4 from BRD9 Is a Critical Regulator of Androgen Receptor Signaling and Prostate Cancer Progression
Authors: Alpsoy Aktan , Utturkar Sagar M. , Carter Benjamin C. , Dhiman Alisha , Torregrosa-Allen Sandra E. , Currie Melanie P. , Elzey Bennett D. , Dykhuizen Emily C.
Published: April 2023

Tables of antibodies, primers, ChIP-Seq data and sequencing datasets
Supplementary Data from BRD9 Is a Critical Regulator of Androgen Receptor Signaling and Prostate Cancer Progression
Authors: Alpsoy Aktan , Utturkar Sagar M. , Carter Benjamin C. , Dhiman Alisha , Torregrosa-Allen Sandra E. , Currie Melanie P. , Elzey Bennett D. , Dykhuizen Emily C.
Published: April 2023

Figures S1-S6
Supplementary Data from Heterogeneity and Clonal Evolution of Acquired PARP Inhibitor Resistance in TP53- and BRCA1-Deficient Cells
Authors: Färkkilä Anniina , Rodríguez Alfredo , Oikkonen Jaana , Gulhan Doga C. , Nguyen Huy , Domínguez Julieta , Ramos Sandra , Mills Caitlin E. , Pérez-Villatoro Fernando , Lazaro Jean-Bernard , Zhou Jia , Clairmont Connor S. , Moreau Lisa A. , Park Peter J. , Sorger Peter K. , Hautaniemi Sampsa , Frias Sara , D'Andrea Alan D.
Published: April 2023

Supplementary Figures
Supplementary Tables from Interactive Classification of Whole-Slide Imaging Data for Cancer Researchers
Authors: Lee Sanghoon , Amgad Mohamed , Mobadersany Pooya , McCormick Matt , Pollack Brian P. , Elfandy Habiba , Hussein Hagar , Gutman David A. , Cooper Lee A.D.
Published: April 2023

Supplementary tables.
Supplementary Figure 3 from Differential Regulation of Cancer Progression by CDK4/6 Plays a Central Role in DNA Replication and Repair Pathways
Authors: Dai Meiou , Boudreault Julien , Wang Ni , Poulet Sophie , Daliah Girija , Yan Gang , Moamer Alaa , Burgos Sergio A. , Sabri Siham , Ali Suhad , Lebrun Jean-Jacques
Published: April 2023

Supplementary Figure 3
Supplementary Methods, Figures and Tables from MYC-Activated LncRNA MNX1-AS1 Promotes the Progression of Colorectal Cancer by Stabilizing YB1
Authors: Wu Qi-Nian , Luo Xiao-Jing , Liu Jia , Lu Yun-Xin , Wang Yun , Qi Jingjing , Liu Ze-Xian , Huang Qi-Tao , Liu Ze-Kun , Lu Jia-Bin , Jin Ying , Pu Heng-Ying , Hu Pei-Shan , Zheng Jia-Bo , Zeng Zhao-Lei , Ju Huai-Qiang , Xie Dan , Zhao Qi , Xu Ruihua
Published: April 2023

Supplementary Methods provide experimental details on bioinformatics analysis, standard assays using commercial reagents and kits; Supplementary Figures S1-8 describe additional data to support the function of MNX1-AS1, which promotes the tumorigenesis in both CRC cells and tissues; Supplementary tables S1-6 show clinical information of sequenced patients, detailed screening candidates for validation, regression analysis together with mass spectrometry data used in this study.
Supplementary figures from Endocytosis-Mediated Replenishment of Amino Acids Favors Cancer Cell Proliferation and Survival in Chromophobe Renal Cell Carcinoma
Authors: Xiao Yi , Rabien Anja , Buschow René , Amtislavskiy Vyacheslav , Busch Jonas , Kilic Ergin , Villegas Sonia L. , Timmermann Bernd , Schütte Moritz , Mielke Thorsten , Yaspo Marie-Laure , Jung Klaus , Meierhofer David
Published: April 2023

Supplementary figures and figure legends
Video 3 from PLK1 Induces Chromosomal Instability and Overrides Cell-Cycle Checkpoints to Drive Tumorigenesis
Authors: Gheghiani Lilia , Wang Lei , Zhang Youwei , Moore Xavier T.R. , Zhang Jinglei , Smith Steven C. , Tian Yijun , Wang Liang , Turner Kristi , Jackson-Cook Colleen K. , Mukhopadhyay Nitai D. , Fu Zheng
Published: April 2023

Video 3 from PLK1 Induces Chromosomal Instability and Overrides Cell-Cycle Checkpoints to Drive Tumorigenesis
Video 2 from PLK1 Induces Chromosomal Instability and Overrides Cell-Cycle Checkpoints to Drive Tumorigenesis
Authors: Gheghiani Lilia , Wang Lei , Zhang Youwei , Moore Xavier T.R. , Zhang Jinglei , Smith Steven C. , Tian Yijun , Wang Liang , Turner Kristi , Jackson-Cook Colleen K. , Mukhopadhyay Nitai D. , Fu Zheng
Published: April 2023

Video 2 from PLK1 Induces Chromosomal Instability and Overrides Cell-Cycle Checkpoints to Drive Tumorigenesis
Full scan WB from PLK1 Induces Chromosomal Instability and Overrides Cell-Cycle Checkpoints to Drive Tumorigenesis
Authors: Gheghiani Lilia , Wang Lei , Zhang Youwei , Moore Xavier T.R. , Zhang Jinglei , Smith Steven C. , Tian Yijun , Wang Liang , Turner Kristi , Jackson-Cook Colleen K. , Mukhopadhyay Nitai D. , Fu Zheng
Published: April 2023

full scan WB
Supplementary Data from Bidirectional Cross-talk between MAOA and AR Promotes Hormone-Dependent and Castration-Resistant Prostate Cancer
Authors: Wei Jing , Yin Lijuan , Li Jingjing , Wang Jing , Pu Tianjie , Duan Peng , Lin Tzu-Ping , Gao Allen C. , Wu Boyang Jason
Published: April 2023

This file include 11 Supplementary Figures, Supplementary Materials and Methods, and Supplementary References.
Supplementary Figure 3 from Hedgehog Signaling Regulates Metabolism and Polarization of Mammary Tumor-Associated Macrophages
Authors: Hinshaw Dominique C. , Hanna Ann , Lama-Sherpa Tshering , Metge Brandon , Kammerud Sarah C. , Benavides Gloria A. , Kumar Atul , Alsheikh Heba Allah , Mota Mateus , Chen Dongquan , Ballinger Scott W. , Rathmell Jeffrey C. , Ponnazhagan Selvarangan , Darley-Usmar Victor , Samant Rajeev S. , Shevde Lalita A.
Published: April 2023

Supplementary Figure 3
Table S1 from EGFR Activates a TAZ-Driven Oncogenic Program in Glioblastoma
Authors: Gao Minling , Fu Yi , Zhou Weiqiang , Gui Gege , Lal Bachuchu , Li Yunqing , Xia Shuli , Ji Hongkai , Eberhart Charles G. , Laterra John , Ying Mingyao
Published: April 2023

RNA-Seq results: DE genes in GBM1B cells with +/- 4-hour EGF treatment (related to Figure 4).
Supplementary Data from Hedgehog Signaling Regulates Metabolism and Polarization of Mammary Tumor-Associated Macrophages
Authors: Hinshaw Dominique C. , Hanna Ann , Lama-Sherpa Tshering , Metge Brandon , Kammerud Sarah C. , Benavides Gloria A. , Kumar Atul , Alsheikh Heba Allah , Mota Mateus , Chen Dongquan , Ballinger Scott W. , Rathmell Jeffrey C. , Ponnazhagan Selvarangan , Darley-Usmar Victor , Samant Rajeev S. , Shevde Lalita A.
Published: April 2023

Supplementary Figure Legends and Tables
Supplementary Table 1 from Whole-Exome Sequencing of Radiation-Induced Thymic Lymphoma in Mouse Models Identifies Notch1 Activation as a Driver of p53 Wild-Type Lymphoma
Authors: Lee Chang-Lung , Brock Kennedy D. , Hasapis Stephanie , Zhang Dadong , Sibley Alexander B. , Qin Xiaodi , Gresham Jeremy S. , Caraballo Isibel , Luo Lixia , Daniel Andrea R. , Hilton Matthew J. , Owzar Kouros , Kirsch David G.
Published: April 2023

List of primers for Sanger sequencing and targeted sequencing
Supplementary Figures from Protein Signatures of NK Cell–Mediated Melanoma Killing Predict Response to Immunotherapies
Authors: Cappello Sabrina , Sung Hsu-Min , Ickes Christian , Gibhardt Christine S. , Vultur Adina , Bhat Hilal , Hu Zhongwen , Brafford Patricia , Denger Andreas , Stejerean-Todoran Ioana , Köhn Rixa-Mareike , Lorenz Verena , Künzel Nicolas , Salinas Gabriela , Stanisz Hedwig , Legler Tobias , Rehling Peter , Schön Michael P. , Lang Karl S. , Helms Volkhard , Herlyn Meenhard , Hoth Markus , Kummerow Carsten , Bogeski Ivan
Published: April 2023

A file containing supplementary figures 1-8 and the supplementary table S1.
Supplementary Data from A MyD88/IL1R Axis Regulates PD-1 Expression on Tumor-Associated Macrophages and Sustains Their Immunosuppressive Function in Melanoma
Authors: Tartey Sarang , Neale Geoffrey , Vogel Peter , Malireddi R.K. Subbarao , Kanneganti Thirumala-Devi
Published: April 2023

Supplementary Figures and Tables
Supplementary Data from MYCN-Amplified Neuroblastoma Is Addicted to Iron and Vulnerable to Inhibition of the System Xc-/Glutathione Axis
Authors: Floros Konstantinos V. , Cai JinYang , Jacob Sheeba , Kurupi Richard , Fairchild Carter K. , Shende Mayuri , Coon Colin M. , Powell Krista M. , Belvin Benjamin R. , Hu Bin , Puchalapalli Madhavi , Ramamoorthy Sivapriya , Swift Kimberly , Lewis Janina P. , Dozmorov Mikhail G. , Glod John , Koblinski Jennifer E. , Boikos Sosipatros A. , Faber Anthony C.
Published: April 2023

Supplemental data
Video 4 Intravital imaging of BrafV600E melanoma cells expressing GCaMP6s with or without treatment of a VEGFR inhibitor, motesanib. from Intravital Imaging Identifies the VEGF–TXA2 Axis as a Critical Promoter of PGE2 Secretion from Tumor Cells and Immune Evasion
Authors: Konishi Yoshinobu , Ichise Hiroshi , Watabe Tetsuya , Oki Choji , Tsukiji Shinya , Hamazaki Yoko , Murakawa Yasuhiro , Takaori-Kondo Akifumi , Terai Kenta , Matsuda Michiyuki
Published: April 2023

Intravital imaging of BrafV600E melanoma cells expressing GCaMP6s with or without treatment of a VEGFR inhibitor, motesanib. Images represent the fold increase in fluorescence intensity shown in IMD mode as in Figure 4C. Images were acquired every 6 seconds for 40 minutes. Motesanib was intravenously administered at 10 minutes. At only about 20 minutes after administration, the Ca2+ transients were significantly suppressed. Scale bar = 60 µm. Times are shown in minutes (m) and seconds (s).
Figure S6 from MYCN-Amplified Neuroblastoma Is Addicted to Iron and Vulnerable to Inhibition of the System Xc-/Glutathione Axis
Authors: Floros Konstantinos V. , Cai JinYang , Jacob Sheeba , Kurupi Richard , Fairchild Carter K. , Shende Mayuri , Coon Colin M. , Powell Krista M. , Belvin Benjamin R. , Hu Bin , Puchalapalli Madhavi , Ramamoorthy Sivapriya , Swift Kimberly , Lewis Janina P. , Dozmorov Mikhail G. , Glod John , Koblinski Jennifer E. , Boikos Sosipatros A. , Faber Anthony C.
Published: April 2023

Figure S6. Overexpression of c-Myc in neuroblastomas increases the expression of transferrin receptor 1, the system Xc- subunit SLC3A2, and sensitizes neuroblastomas to auranofin.
Table S5 from Fusobacterium Nucleatum Promotes the Development of Colorectal Cancer by Activating a Cytochrome P450/Epoxyoctadecenoic Acid Axis via TLR4/Keap1/NRF2 Signaling
Authors: Kong Cheng , Yan Xuebing , Zhu Yefei , Zhu Huiyuan , Luo Ying , Liu Peipei , Ferrandon Sylvain , Kalady Matthew F. , Gao Renyuan , He Jide , Yin Fang , Qu Xiao , Zheng Jiayi , Gao Yaohui , Wei Qing , Ma Yanlei , Liu Jun-Yan , Qin Huanlong
Published: April 2023

Table S5 shows the clinical characteristics of colorectal cancer patients in the TCGA dataset.
Supplemental Video 2 from Phenotypic Heterogeneity and Metastasis of Breast Cancer Cells
Authors: Hapach Lauren A. , Carey Shawn P. , Schwager Samantha C. , Taufalele Paul V. , Wang Wenjun , Mosier Jenna A. , Ortiz-Otero Nerymar , McArdle Tanner J. , Goldblatt Zachary E. , Lampi Marsha C. , Bordeleau Francois , Marshall Jocelyn R. , Richardson Isaac M. , Li Jiahe , King Michael R. , Reinhart-King Cynthia A.
Published: April 2023

Video of migration of MDA- cells in collagen
Supplemental Video 1 from Phenotypic Heterogeneity and Metastasis of Breast Cancer Cells
Authors: Hapach Lauren A. , Carey Shawn P. , Schwager Samantha C. , Taufalele Paul V. , Wang Wenjun , Mosier Jenna A. , Ortiz-Otero Nerymar , McArdle Tanner J. , Goldblatt Zachary E. , Lampi Marsha C. , Bordeleau Francois , Marshall Jocelyn R. , Richardson Isaac M. , Li Jiahe , King Michael R. , Reinhart-King Cynthia A.
Published: April 2023

Video of migration of MDA+ cells in collagen
Table S10 from Fusobacterium Nucleatum Promotes the Development of Colorectal Cancer by Activating a Cytochrome P450/Epoxyoctadecenoic Acid Axis via TLR4/Keap1/NRF2 Signaling
Authors: Kong Cheng , Yan Xuebing , Zhu Yefei , Zhu Huiyuan , Luo Ying , Liu Peipei , Ferrandon Sylvain , Kalady Matthew F. , Gao Renyuan , He Jide , Yin Fang , Qu Xiao , Zheng Jiayi , Gao Yaohui , Wei Qing , Ma Yanlei , Liu Jun-Yan , Qin Huanlong
Published: April 2023

Table S10 shows the linoleic acid dietary composition.
Supplementary Data from RINT1 Regulates SUMOylation and the DNA Damage Response to Preserve Cellular Homeostasis in Pancreatic Cancer
Authors: Arnold Frank , Gout Johann , Wiese Heike , Weissinger Stephanie E. , Roger Elodie , Perkhofer Lukas , Walter Karolin , Scheible Jeanette , Prelli Bozzo Caterina , Lechel André , Ettrich Thomas J. , Azoitei Ninel , Hao Li , Fürstberger Axel , Kaminska Ewa K. , Sparrer Konstantin M.J. , Rasche Volker , Wiese Sebastian , Kestler Hans A. , Möller Peter , Seufferlein Thomas , Frappart Pierre-Olivier , Kleger Alexander
Published: April 2023

Contains a more detailed method section as well as all additional supplementary figures S1 to S8
Table S1 from Fusobacterium Nucleatum Promotes the Development of Colorectal Cancer by Activating a Cytochrome P450/Epoxyoctadecenoic Acid Axis via TLR4/Keap1/NRF2 Signaling
Authors: Kong Cheng , Yan Xuebing , Zhu Yefei , Zhu Huiyuan , Luo Ying , Liu Peipei , Ferrandon Sylvain , Kalady Matthew F. , Gao Renyuan , He Jide , Yin Fang , Qu Xiao , Zheng Jiayi , Gao Yaohui , Wei Qing , Ma Yanlei , Liu Jun-Yan , Qin Huanlong
Published: April 2023

Table S1 shows the clinical characteristics of the enrolled participants.
Supplementary Figures and Tables from TIMP1 Triggers Neutrophil Extracellular Trap Formation in Pancreatic Cancer
Authors: Schoeps Benjamin , Eckfeld Celina , Prokopchuk Olga , Böttcher Jan , Häußler Daniel , Steiger Katja , Demir Ihsan Ekin , Knolle Percy , Soehnlein Oliver , Jenne Dieter E. , Hermann Chris D. , Krüger Achim
Published: April 2023

Supplementary Figures S1 - S9 Table S1 and S2
Figure S3 from Diet Alters Entero-Mammary Signaling to Regulate the Breast Microbiome and Tumorigenesis
Authors: Soto-Pantoja David R. , Gaber Mohamed , Arnone Alana A. , Bronson Steven M. , Cruz-Diaz Nildris , Wilson Adam S. , Clear Kenysha Y.J. , Ramirez Manuel U. , Kucera Gregory L. , Levine Edward A. , Lelièvre Sophie A. , Chaboub Lesley , Chiba Akiko , Yadav Hariom , Vidi Pierre-Alexandre , Cook Katherine L.
Published: April 2023

Effect of PUFA on apical polarity in S1 acini. S1 cells cultured in 3D were treated following differentiation (days 8-12) with 10 μM of n-6 arachidonic acid (AA) or with vehicle (ethanol). (A) Representative confocal images of acini treated with vehicle or arachidonic acid (AA) and stained for ZO-1. DAPI was used to counterstained nuclei. Arrows point at nonpolarized ZO-1 and the dashed circle outlines the location of apical ZO-1. (B) Bar graph of the percentages of acini with apically polarized ZO-1 following treatments with vehicle or AA. **p < 0.01. Size bar, 5 μm
Supplemental Table 5 from LSD1 and Aberrant DNA Methylation Mediate Persistence of Enteroendocrine Progenitors That Support BRAF-Mutant Colorectal Cancer
Authors: Miller Samuel A. , Policastro Robert A. , Sriramkumar Shruthi , Lai Tim , Huntington Thomas D. , Ladaika Christopher A. , Kim Daeho , Hao Chunhai , Zentner Gabriel E. , O'Hagan Heather M.
Published: April 2023

Statistical analysis of TCGA COAD comparing Normal, BRAF mutant, KRAS mutant, and all other tumors.
Supplemental Material from LSD1 and Aberrant DNA Methylation Mediate Persistence of Enteroendocrine Progenitors That Support BRAF-Mutant Colorectal Cancer
Authors: Miller Samuel A. , Policastro Robert A. , Sriramkumar Shruthi , Lai Tim , Huntington Thomas D. , Ladaika Christopher A. , Kim Daeho , Hao Chunhai , Zentner Gabriel E. , O'Hagan Heather M.
Published: April 2023

Supplemental Tables 1 and 2, Supplemental Figures 1-8, Supplemental Methods
Supplementary Data from MTAP Deficiency–Induced Metabolic Reprogramming Creates a Vulnerability to Cotargeting De Novo Purine Synthesis and Glycolysis in Pancreatic Cancer
Authors: Hu Qiangsheng , Qin Yi , Ji Shunrong , Shi Xiuhui , Dai Weixing , Fan Guixiong , Li Shuo , Xu Wenyan , Liu Wensheng , Liu Mengqi , Zhang Zheng , Ye Zeng , Zhou Zhijun , Yang Jingxuan , Zhuo Qifeng , Yu Xianjun , Li Min , Xu Xiaowu
Published: April 2023

Supplementary Table1
FigureS1 from MTAP Deficiency–Induced Metabolic Reprogramming Creates a Vulnerability to Cotargeting De Novo Purine Synthesis and Glycolysis in Pancreatic Cancer
Authors: Hu Qiangsheng , Qin Yi , Ji Shunrong , Shi Xiuhui , Dai Weixing , Fan Guixiong , Li Shuo , Xu Wenyan , Liu Wensheng , Liu Mengqi , Zhang Zheng , Ye Zeng , Zhou Zhijun , Yang Jingxuan , Zhuo Qifeng , Yu Xianjun , Li Min , Xu Xiaowu
Published: April 2023

Supplementary Figure1
Figure S3 from Delta-Like Ligand–Notch1 Signaling Is Selectively Modulated by HPV16 E6 to Promote Squamous Cell Proliferation and Correlates with Cervical Cancer Prognosis
Authors: Khelil Maryam , Griffin Heather , Bleeker Maaike C.G. , Steenbergen Renske D.M. , Zheng Ke , Saunders-Wood Taylor , Samuels Sanne , Rotman Jossie , Vos Wim , van den Akker Brendy E. , de Menezes Renée X. , Kenter Gemma G. , Doorbar John , Jordanova Ekaterina S.
Published: April 2023

Molecular heterogeneity in cervical carcinomas (TCGA).
Figure S1 from Delta-Like Ligand–Notch1 Signaling Is Selectively Modulated by HPV16 E6 to Promote Squamous Cell Proliferation and Correlates with Cervical Cancer Prognosis
Authors: Khelil Maryam , Griffin Heather , Bleeker Maaike C.G. , Steenbergen Renske D.M. , Zheng Ke , Saunders-Wood Taylor , Samuels Sanne , Rotman Jossie , Vos Wim , van den Akker Brendy E. , de Menezes Renée X. , Kenter Gemma G. , Doorbar John , Jordanova Ekaterina S.
Published: April 2023

Levels of DLL1, DLL4, N1ICD and KRT10 in cervical tissue and/or NIKS.
Table S1 from Multilevel Regulation of β-Catenin Activity by SETD2 Suppresses the Transition from Polycystic Kidney Disease to Clear Cell Renal Cell Carcinoma
Authors: Rao Hanyu , Li Xiaoxue , Liu Min , Liu Jing , Feng Wenxin , Tang Huayuan , Xu Jin , Gao Wei-Qiang , Li Li
Published: April 2023

The information of the primers used in mRNA detection.
Supplementary File S2 from Premalignant Oligodendrocyte Precursor Cells Stall in a Heterogeneous State of Replication Stress Prior to Gliomagenesis
Authors: Sutcliffe Matthew D. , Galvao Rui P. , Wang Lixin , Kim Jungeun , Rosenfeld Lauren K. , Singh Shambhavi , Zong Hui , Janes Kevin A.
Published: April 2023

Relative transcript abundance changes (log2 fold change between mutant and control) in bulk samples at 150 dpi (Sheet 1), 12 dpi (Sheet 2), and 90 dpi (Sheet 3). Comparisons are separately broken down according to sex at each dpi time point (Sheets 4-9) .
Figure S6 from Multilevel Regulation of β-Catenin Activity by SETD2 Suppresses the Transition from Polycystic Kidney Disease to Clear Cell Renal Cell Carcinoma
Authors: Rao Hanyu , Li Xiaoxue , Liu Min , Liu Jing , Feng Wenxin , Tang Huayuan , Xu Jin , Gao Wei-Qiang , Li Li
Published: April 2023

Inhibition of β-catenin signaling relieves the symptom caused by SETD2 deletion.
Supplementary File S1 from Premalignant Oligodendrocyte Precursor Cells Stall in a Heterogeneous State of Replication Stress Prior to Gliomagenesis
Authors: Sutcliffe Matthew D. , Galvao Rui P. , Wang Lixin , Kim Jungeun , Rosenfeld Lauren K. , Singh Shambhavi , Zong Hui , Janes Kevin A.
Published: April 2023

Hallmark MSigDB enrichments for differentially expressed transcripts between control and mutant bulk samples at 150 dpi (Sheets 1, 2, 7, and 8), 12 dpi (Sheets 3, 4, 9, and 10), and 90 dpi (Sheets 5, 6, 11, and 12). Increased (up, Sheets 1, 3, 5, 7, 9, and 11) and decreased (down, Sheets 2, 4, 6, 8, 10, 12) transcripts were analyzed separately without any fold-change cutoff (Sheets 1-6) or with a two-fold cutoff (fc2.0, Sheets 7-12).