bluuebunny/crossref_metadata_2025 huggingface dataset:
Perceptual decisions are biased toward relevant prior choices
Authors: Feigin Helen , Baror Shira , Bar Moshe , Zaidel Adam
Published: January 2021

Perceptual decisions are biased by recent perceptual history—a phenomenon termed 'serial dependence.' Here, we investigated what aspects of perceptual decisions lead to serial dependence, and disambiguated the influences of low-level sensory information, prior choices and motor actions. Participants discriminated whether a brief visual stimulus lay to left/right of the screen center. Following a series of biased ‘prior’ location discriminations, subsequent ‘test’ location discriminations were biased toward the prior choices, even when these were reported via different motor actions (using different keys), and when the prior and test stimuli differed in color. By contrast, prior discriminations about an irrelevant stimulus feature (color) did not substantially influence subsequent location discriminations, even though these were reported via the same motor actions. Additionally, when color (not location) was discriminated, a bias in prior stimulus locations no longer influenced subsequent location discriminations. Although low-level stimuli and motor actions did not trigger serial-dependence on their own, similarity of these features across discriminations boosted the effect. These findings suggest that relevance across perceptual decisions is a key factor for serial dependence. Accordingly, serial dependence likely reflects a high-level mechanism by which the brain predicts and interprets new incoming sensory information in accordance with relevant prior choices.
Highly expressed SLCO1B3 inhibits the occurrence and development of breast cancer and can be used as a clinical indicator of prognosis
Authors: Tang Tiantian , Wang Guiying , Liu Sihua , Zhang Zhaoxue , Liu Chen , Li Fang , Liu Xudi , Meng Lingjiao , Yang Huichai , Li Chunxiao , Sang Meixiang , Zhao Lianmei
Published: January 2021

The role of organic anion transporting polypeptide 1B3 (SLCO1B3) in breast cancer is still controversial. The clinical immunohistochemical results showed that a greater proportion of patients with negative lymph nodes, AJCC stage I, and histological grade 1 (P < 0.05) was positively correlated with stronger expression of SLCO1B3, and DFS and OS were also increased significantly in these patients (P = 0.041, P = 0.001). Further subgroup analysis showed that DFS and OS were significantly enhanced with the increased expression of SLCO1B3 in the ER positive subgroup. The cellular function assay showed that the ability of cell proliferation, migration and invasion was significantly enhanced after knockdown of SLCO1B3 expression in breast cancer cell lines. In contrast, the ability of cell proliferation, migration and invasion was significantly reduced after overexpress the SLCO1B3 in breast cancer cell lines (P < 0.05). Overexpression or knockdown of SLCO1B3 had no effect on the apoptotic ability of breast cancer cells. High level of SLCO1B3 expression can inhibit the proliferation, invasion and migration of breast cancer cells, leading to better prognosis of patients. The role of SLCO1B3 in breast cancer may be related to estrogen. SLCO1B3 will become a potential biomarker for breast cancer diagnosis and prognosis assessment.
Nonlinear vibration of a buckled/damaged BNC nanobeam transversally impacted by a high-speed C60
Authors: Shi Jiao , Yang Likui , Shen Jianhu , Cai Kun
Published: January 2021

Nanotube can be used as a mass sensor. To design a mass sensor for evaluating a high-speed nanoparticle, in this study, we investigated the impact vibration of a cantilever nanobeam being transversally collided by a high-speed C60 at the beam's free end with an incident velocity of vIn. The capped beam contains alternately two boron nitride zones and two carbon zones on its cross section. Hence, the relaxed beam has elliptic cross section. The vibration properties were demonstrated by molecular dynamics simulation results. Beat vibration of a slim beam can be found easily. The 1st and the 2nd order natural frequencies (f1 and f2) of the beam illustrate the vibration of beam along the short and the long axes of its elliptic cross section, respectively. f2 decreases with increasing temperature. A minimal value of vIn leads to the local buckling of the beam, and a different minimal vIn leading to damage of the beam. For the same system at a specified temperature, f2 varies with vIn. When the beam bends almost uniformly, f2 decreases linearly with vIn. If vIn becomes higher, the beam has a cross section which buckles locally, and the buckling position varies during vibration. If vIn approaches the damage velocity, a fixed contraflexture point may appear on the beam due to its strong buckling. Above the damage velocity, f2 decreases sharply. These results have a potential application in design of a mass sensor.
Impact of changes in waist-to-hip ratio after kidney transplantation on cardiovascular outcomes
Authors: Gwon Jun Gyo , Choi Jimi , Jung Cheol Woong , Lee Chang Hun , Oh Se Won , Jo Sang-Kyung , Cho Won Yong , Park Jae Berm , Huh Kyu Ha , Ro Han , Han Seungyeup , Cho Jang-Hee , Lee Sik , Yang Jaeseok , Kim Myung-Gyu
Published: January 2021

Recently, waist to hip ratio (WHR) has been reported to be a better indicator of predicting cardiovascular outcomes than body mass index (BMI). We evaluated the effects of pre or post-transplant changes of WHR or BMI on the new onset cardiovascular diseases (CVD) in recipients of kidney transplantation (KT). A total of 572 patients were enrolled from a multicenter observational cohort (KNOW-KT). Measurement of WHR and BMI was done at pre-KT, first and last visit year after KT, and the changes of these parameters and their effect on the incident CVD were analyzed. During the median follow up period of 32.73 ± 15.26 months, the new onset CVD developed in 31 out of 572 patients. The older age, diabetes mellitus and increase of WHR from pre KT or previous follow up year were found to be independent factors predicting the new onset CVD in these patients. However, baseline BMI, WHR prior to KT did not predict the incident CVD. The new metabolic burden, presented as increase of WHR in KT patients has a critical impact on the development of new onset CVD. Strategies to prevent the metabolic burden after KT might improve cardiovascular outcomes and patient’s survival.
Pharmacokinetics and pharmacodynamics integration of danofloxacin against Eschrichia coli in piglet ileum ultrafiltration probe model
Authors: Yang Yuqi , Cheng Ping , Xiao Tianshi , Ulziikhutag Jargalsaikhan , Yu Hongxiao , Li Jiarui , Liu Ruimeng , Muhammad Ishfaq , Zhang Xiuying
Published: January 2021

Improper use of antibiotics results in poor treatment and severe bacterial resistance. In this study, ultrafiltration probes were successfully placed in the ileum of piglets with the aid of anesthetic. After the fluoroquinolone antimicrobial drug danofloxacin (DAN) was intramuscularly administered, blood and ileum ultrafiltrate were collected at different time points and then determined by High Performance Liquid Chromatography (HPLC). Pharmacokinetics (PK) parameters for plasma and ileum ultrafiltrate were calculated by WinNonlin software. The DAN concentration in ileum ultrafiltrate was much higher than that in plasma during the period 1.2–48 h. The DAN concentration in plasma reached its maximum at 1.10 ± 0.03 h, but reached at 6.00 ± 0.00 h in the ileum ultrafiltrate. The mean Cmaxof the ileum is 13.59 times that of plasma. The elimination half-life (T1/2β) in the ileum ultrafiltrate (6.84 ± 1.49 h) was shorter than those in plasma (7.58 ± 3.20 h). The MIC, MBC and MPC of DAN in MH broth againstEscherichia coli(O158) were 0.5 µg/mL, 0.5 µg/mL and 4 µg/mL, respectively. Both in vitro and ex vivo kill curves indicated that the killing mechanism of DAN againstE. coliis concentration-dependent. The AUC/MPC ratio is 21.33 ± 2.14. Mean PK/PD index (AUC24h/MIC) for ileum ultrafiltrate that achieved bacteriostatic, bactericidal, and eradication were 99.85, 155.57, and 218.02 h, respectively. Three different dosages (1.49 mg/kg, 2.42 mg/kg, and 3.24 mg/kg) were calculated respectively based on AUC24h/MIC ratio above, which might provide a novel approach to the rational design of dosage schedules.
Intramedullary injury combined with osteoporosis therapeutics regulates targeted local osteogenesis
Authors: Miyazaki-Asato Yoko , Koi Kiyono , Fujimoto Hiroki , Kakura Kae , Kido Hirofumi , Yanagi Tsukasa , Yamashita Junro
Published: January 2021

Bone marrow ablation prompts transient bone formation in nearly the entire medullary cavity before marrow regeneration occurs. Here, we establish a procedure to direct bone formation in a desired particular site within the medullary cavity for support of biomedical devices. Local intramedullary injury was performed in the tibiae of rats and parathyroid hormone (PTH), alendronate, or saline was administered. Newly generated bone in the medulla was assessed by micro-CT and histology. To evaluate the function of newly generated bone, animals received intramedullary injury in tibiae followed by daily PTH. At day-14, implants were placed in the endocortical bone and the bone response to the implants was assessed. The fate of newly generated bone was compared with and without implants. We found that neither intramedullary injury nor medication alone resulted in bone formation. However, when combined, substantial bone was generated locally inside the diaphyseal medulla. Newly formed bone disappeared without implant placement but was retained with implants. Bone was especially retained around and between the implants. This study found that local bone marrow disruption followed by PTH or alendronate generated substantial cancellous bone locally in the diaphyseal medulla. This approach offers promise as a tissue engineering tool in medicine and dentistry.
Universal principles underlying segmental structures in parrot song and human speech
Authors: Mann Dan C. , Fitch W. Tecumseh , Tu Hsiao-Wei , Hoeschele Marisa
Published: January 2021

Despite the diversity of human languages, certain linguistic patterns are remarkably consistent across human populations. While syntactic universals receive more attention, there is stronger evidence for universal patterns in the inventory and organization of segments: units that are separated by rapid acoustic transitions which are used to build syllables, words, and phrases. Crucially, if an alien researcher investigated spoken human language how we analyze non-human communication systems, many of the phonological regularities would be overlooked, as the majority of analyses in non-humans treat breath groups, or “syllables” (units divided by silent inhalations), as the smallest unit. Here, we introduce a novel segment-based analysis that reveals patterns in the acoustic output of budgerigars, a vocal learning parrot species, that match universal phonological patterns well-documented in humans. We show that song in four independent budgerigar populations is comprised of consonant- and vowel-like segments. Furthermore, the organization of segments within syllables is not random. As in spoken human language, segments at the start of a vocalization are more likely to be consonant-like and segments at the end are more likely to be longer, quieter, and lower in fundamental frequency. These results provide a new foundation for empirical investigation of language-like abilities in other species.
Combination of serum and CSF neurofilament-light and neuroinflammatory biomarkers to evaluate ALS
Authors: Brodovitch Alexandre , Boucraut José , Delmont Emilien , Parlanti Amandine , Grapperon Aude-Marie , Attarian Shahram , Verschueren Annie
Published: January 2021

This monocentric prospective study of patient suffering from Amyotrophic lateral sclerosis (ALS) aims to evaluate the prognosis and diagnostic potential of both Neurofilament-Light (Nf-L) and neuroinflammatory biomarkers in serum and CSF. Candidate markers levels were measured using multiplex method in serum of 60 ALS patients, 94 healthy controls of 43 patients suffering from Inflammatory Peripheral Neuropathies (IPN). A comparative CSF analysis was performed for 20 ALS and 17 IPN patients. Among the altered biomarkers, CSF Nf-L level remains the best marker of ALS severity, while serum levels correlate strongly with disease progression. The combination of Nf-L and ICAM-1 concentrations in the CSF and IFN-γ concentration in the serum differentiate ALS patients from IPN patients with improved sensibility and specificity relative to individual biomarkers. A cutoff value of 0.49 for the fitted values of these 3 biomarkers discriminate ALS from IPN patients with a specificity of 100% (78.20–100%) and a sensibility of 85.71% (57.19–98.22%) with an AUC of 0.99 ± 0.01. The measure of Nf-L and neuroinflammatory biomarkers in CSF and serum can be useful biomarkers panel in the differential diagnosis of ALS.
A selectable, plasmid-based system to generate CRISPR/Cas9 gene edited and knock-in mosquito cell lines
Authors: Rozen-Gagnon Kathryn , Yi Soon , Jacobson Eliana , Novack Sasha , Rice Charles M.
Published: January 2021

Aedes (Ae.) aegypti and Ae. albopictus mosquitoes transmit arthropod-borne diseases around the globe, causing ~ 700,000 deaths each year. Genetic mutants are valuable tools to interrogate both fundamental vector biology and mosquito host factors important for viral infection. However, very few genetic mutants have been described in mosquitoes in comparison to model organisms. The relative ease of applying CRISPR/Cas9-based gene editing has transformed genome engineering and has rapidly increased the number of available gene mutants in mosquitoes. Yet, in vivo studies may not be practical for screening large sets of mutants or possible for laboratories that lack insectaries. Thus, it would be useful to adapt CRISPR/Cas9 systems to common mosquito cell lines. In this study, we generated and characterized a mosquito optimized, plasmid-based CRISPR/Cas9 system for use in U4.4 (Ae. albopictus) and Aag2 (Ae. aegypti) cell lines. We demonstrated highly efficient editing of the AGO1 locus and isolated U4.4 and Aag2 cell lines with reduced AGO1 expression. Further, we used homology-directed repair to establish knock-in Aag2 cell lines with a 3xFLAG-tag at the N-terminus of endogenous AGO1. These experimentally verified plasmids are versatile, cost-effective, and efficiently edit immune competent mosquito cell lines that are widely used in arbovirus studies.
Nestling odour modulates behavioural response in male, but not in female zebra finches
Authors: Golüke Sarah , Bischof Hans-Joachim , Caspers Barbara A.
Published: January 2021

Studies investigating parent offspring recognition in birds led to the conclusion that offspring recognition is absent at the early nestling stage. Especially male songbirds were often assumed to be unable to discriminate between own and foreign offspring. However, olfactory offspring recognition in birds has not been taken into account as yet, probably because particularly songbirds have for a long time been assumed anosmic. This study aimed to test whether offspring might be recognised via smell. We presented zebra finch (Taeniopygia guttata) parents either the odour of their own or that of foreign nestlings and investigated whether the odour presentation resulted in a change in the number of head saccades, i.e. the rapid horizontal turning of the head, with which birds scan their environment and which can be used as a proxy of arousal. Our experiment indicates that male zebra finches, in contrast to females, differentiate between their own and foreign offspring based on odour cues, as indicated by a significant differences in the change of head saccadic movements between males receiving the own chick odour and males receiving the odour of a foreign chick. Thus, it provides behavioural evidence for olfactory offspring recognition in male zebra finches and also the existence of appropriate phenotypic odour cues of the offspring. The question why females do not show any sign of behavioural response remains open, but it might be likely that females use other signatures for offspring recognition.
Retraction Note: Dishonesty is more affected by BMI status than by short-term changes in glucose
Authors: Polizzi di Sorrentino Eugenia , Herrmann Benedikt , Villeval Marie Claire
Published: January 2021

Editor's Note: this Article has been retracted; the Retraction Note is available at https://doi.org/10.1038/s41598-020-80528-2.
Macromolecule suppressed GABA levels show no relationship with age in a pediatric sample
Authors: Bell Tiffany , Stokoe Mehak , Harris Ashley D.
Published: January 2021

The inhibitory neurotransmitter γ-Aminobutyric acid (GABA) plays a crucial role in cortical development. Therefore, characterizing changes in GABA levels during development has important implications for the study of healthy development and developmental disorders. Brain GABA levels can be measured non-invasively using GABA-edited magnetic resonance spectroscopy (MRS). However, the most commonly used editing technique to measure GABA results in contamination of the GABA signal with macromolecules (MM). Therefore, GABA measured using this technique is often referred to as GABA+ . While few in number, previous studies have shown GABA+ levels increase with age during development. However, these studies are unable to specify whether it is specifically GABA that is increasing or, instead, if levels of MM increase. In this study, we use a GABA-editing technique specifically designed to suppress the MM signal (MM-supp GABA). We find no relationship between MM-supp GABA and age in healthy children aged 7–14 years. These findings suggest that the relationship between GABA+ and age is driven by changes in MM levels, not by changes in GABA levels. Moreover, these findings highlight the importance of accounting for MM levels in MRS quantification.
Anthropogenic interferences lead to gut microbiome dysbiosis in Asian elephants and may alter adaptation processes to surrounding environments
Authors: Moustafa Mohamed Abdallah Mohamed , Chel Hla Myet , Thu May June , Bawm Saw , Htun Lat Lat , Win Mar Mar , Oo Zaw Min , Ohsawa Natsuo , Lahdenperä Mirkka , Mohamed Wessam Mohamed Ahmed , Ito Kimihito , Nonaka Nariaki , Nakao Ryo , Katakura Ken
Published: January 2021

Human activities interfere with wild animals and lead to the loss of many animal populations. Therefore, efforts have been made to understand how wildlife can rebound from anthropogenic disturbances. An essential mechanism to adapt to environmental and social changes is the fluctuations in the host gut microbiome. Here we give a comprehensive description of anthropogenically induced microbiome alterations in Asian elephants (n = 30). We detected gut microbial changes due to overseas translocation, captivity and deworming. We found that microbes belonging to Planococcaceae had the highest contribution in the microbiome alterations after translocation, while Clostridiaceae, Spirochaetaceae and Bacteroidia were the most affected after captivity. However, deworming significantly changed the abundance of Flavobacteriaceae, Sphingobacteriaceae, Xanthomonadaceae, Weeksellaceae and Burkholderiaceae. These findings may provide fundamental ideas to help guide the preservation tactics and probiotic replacement therapies of a dysbiosed gut microbiome in Asian elephants. More generally, these results show the severity of anthropogenic activities at the level of gut microbiome, altering the adaptation processes to new environments and the subsequent capability to maintain normal physiological processes in animals.
Plasma fibrinogen in the diagnosis of periprosthetic joint infection
Authors: Yang Fei , Zhao Chenyu , Huang Rong , Ma Hui , Wang Xiaohe , Wang Guodong , Zhao Xiaowei
Published: January 2021

Periprosthetic joint infections (PJIs) have become the most catastrophic complication for patients after arthroplasty. Although previous studies have found that many biomarkers have good performance for diagnosing PJI, early diagnosis remains challenging and a gold standard is lacking. This study aimed to investigate the diagnostic accuracy of plasma fibrinogen (FIB) in detecting PJI compared to other traditional biomarks (CRP, WBC and ESR). A total of 156 patients (including 57 PJI and 99 non-PJI patients) who underwent revision arthroplasty were retrospectively reviewed from 01/2014 to 01/2020. The diagnostic criteria of PJI were mainly based on the definition from the evidence-based definition for periprosthetic joint infection in 2018. The optimal plasma FIB predictive cutoff was 4.20 g/L, the sensitivity of the plasma fibrinogen was 0.860, the specificity was 0.900, the positive predictive value (PPV) was 0.831, and the negative predictive value (NPV) was 0.908. The area under the curve (AUC) value of plasma fibrinogen was 0.916 (95% CI 0.869–0.964), and the CRP, ESR and WBC levels had AUCs of 0.901, 0.822 and 0.647, respectively. Plasma FIB demonstrated better diagnostic strength compared with that of other serum biomarkers before revision arthroplasty. It represents a new horizon for the diagnosis of PJI due to the diagnosis values and cost-effective features.
Tropical rhodolith beds are a major and belittled reef fish habitat
Authors: Moura Rodrigo L. , Abieri Maria L. , Castro Guilherme M. , Carlos-Júnior Lélis A. , Chiroque-Solano Pamela M. , Fernandes Nicole C. , Teixeira Carolina D. , Ribeiro Felipe V. , Salomon Paulo S. , Freitas Matheus O. , Gonçalves Juliana T. , Neves Leonardo M. , Hackradt Carlos W. , Felix-Hackradt Fabiana , Rolim Fernanda A. , Motta Fábio S. , Gadig Otto B. F. , Pereira-Filho Guilherme H. , Bastos Alex C.
Published: January 2021

Understanding habitat-level variation in community structure provides an informed basis for natural resources’ management. Reef fishes are a major component of tropical marine biodiversity, but their abundance and distribution are poorly assessed beyond conventional SCUBA diving depths. Based on a baited-video survey of fish assemblages in Southwestern Atlantic’s most biodiverse region we show that species composition responded mainly to the two major hard-bottom megahabitats (reefs and rhodolith beds) and to the amount of light reaching the bottom. Both megahabitats encompassed typical reef fish assemblages but, unexpectedly, richness in rhodolith beds and reefs was equivalent. The dissimilar fish biomass and trophic structure in reefs and rhodolith beds indicates that these systems function based on contrasting energy pathways, such as the much lower herbivory recorded in the latter. Rhodolith beds, the dominant benthic megahabitat in the tropical Southwestern Atlantic shelf, play an underrated role as fish habitats, and it is critical that they are considered in conservation planning.
The amphibian peptide Yodha is virucidal for Zika and dengue viruses
Authors: Lee Song Hee , Kim Eui Ho , O’neal Justin T. , Dale Gordon , Holthausen David J. , Bowen James R. , Quicke Kendra M. , Skountzou Ioanna , Gopal Shyla , George Sanil , Wrammert Jens , Suthar Mehul S. , Jacob Joshy
Published: January 2021

Zika virus (ZIKV) has emerged as a serious health threat in the Americas and the Caribbean. ZIKV is transmitted by the bite of an infected mosquito, sexual contact, and blood transfusion. ZIKV can also be transmitted to the developing fetus in utero, in some cases resulting in spontaneous abortion, fetal brain abnormalities, and microcephaly. In adults, ZIKV infection has been correlated with Guillain–Barre syndrome. Despite the public health threat posed by ZIKV, neither a vaccine nor antiviral drugs for use in humans are currently available. We have identified an amphibian host defense peptide, Yodha, which has potent virucidal activity against ZIKV. It acts directly on the virus and destroys Zika virus particles within 5 min of exposure. The Yodha peptide was effective against the Asian, African, and South American Zika virus strains and has the potential to be developed as an antiviral therapeutic in the fight against Zika virus. The peptide was also effective against all four dengue virus serotypes. Thus, Yodha peptide could potentially be developed as a pan-therapeutic for Zika and dengue viruses.
Author Correction: The earliest evidence for a supraorbital salt gland in dinosaurs in new Early Cretaceous ornithurines
Authors: Wang Xia , Huang Jiandong , Hu Yuanchao , Liu Xiaoyu , Peteya Jennifer , Clarke Julia A.
Published: January 2021

An amendment to this paper has been published and can be accessed via a link at the top of the paper.
Magnetic resonance microscopy of samples with translational symmetry with FOVs smaller than sample size
Authors: Serša Igor
Published: January 2021

In MRI, usually the Field of View (FOV) has to cover the entire object. If this condition is not fulfilled, an infolding image artifact is observed, which suppresses visualization. In this study it is shown that for samples with translational symmetry, i.e., those consisting of identical objects in periodic unit cells, the FOV can be reduced to match the unit cell which enables imaging of an average object, of which the signal is originated from all unit cells of the sample, with no punishment by a loss in signal-to-noise ratio (SNR). This theoretical prediction was confirmed by experiments on a test sample with a 7 × 7 mm2unit cell arranged in a 3 × 3 matrix which was scanned by the spin-echo and by single point imaging methods. Effects of experimental imperfections in size and orientation mismatch between FOV and unit cell were studied as well. Finally, this method was demonstrated on a 3D periodic sample of tablets, which yielded well-resolved images of moisture distribution in an average tablet, while single tablet imaging provided no results. The method can be applied for SNR increase in imaging of any objects with inherently low signals provided they can be arranged in a periodic structure.
Map and sequence-based chromosome walking towards cloning of the male fertility restoration gene Rf5 linked to R11 in sunflower
Authors: Ma Guojia , Long Yunming , Song Qijian , Talukder Zahirul I. , Shamimuzzaman Md , Qi Lili
Published: January 2021

The nuclear fertility restorer gene Rf5 in HA-R9, originating from the wild sunflower species Helianthus annuus, is able to restore the widely used PET1 cytoplasmic male sterility in sunflowers. Previous mapping placed Rf5 at an interval of 5.8 cM on sunflower chromosome 13, distal to a rust resistance gene R11 at a 1.6 cM genetic distance in an SSR map. In the present study, publicly available SNP markers were further mapped around Rf5 and R11 using 192 F2 individuals, reducing the Rf5 interval from 5.8 to 0.8 cM. Additional SNP markers were developed in the target region of the two genes from the whole-genome resequencing of HA-R9, a donor line carrying Rf5 and R11. Fine mapping using 3517 F3 individuals placed Rf5 at a 0.00071 cM interval and the gene co-segregated with SNP marker S13_216392091. Similarly, fine mapping performed using 8795 F3 individuals mapped R11 at an interval of 0.00210 cM, co-segregating with two SNP markers, S13_225290789 and C13_181790141. Sequence analysis identified Rf5 as a pentatricopeptide repeat-encoding gene. The high-density map and diagnostic SNP markers developed in this study will accelerate the use of Rf5 and R11 in sunflower breeding.
Consecutive sexual maturation observed in a rock shell population in the vicinity of the Fukushima Daiichi Nuclear Power Plant, Japan
Authors: Horiguchi Toshihiro , Kawamura Kayoko , Ohta Yasuhiko
Published: January 2021

In 2012, after the accident at the Fukushima Daiichi Nuclear Power Plant (FDNPP) that followed the Tohoku earthquake and tsunami in March 2011, no rock shell (Thais clavigera; currently recognized as Reishia clavigera; Gastropoda, Neogastropoda, Muricidae) specimens were found near the plant from Hirono to Futaba Beach (a distance of approximately 30 km). In July 2016, however, rock shells were again found to inhabit the area. From April 2017 to May 2019, we collected rock shell specimens monthly at two sites near the FDNPP (Okuma and Tomioka) and at a reference site ~ 120 km south of the FDNPP (Hiraiso). We examined the gonads of the specimens histologically to evaluate their reproductive cycle and sexual maturation. The gonads of the rock shells collected at Okuma, ~ 1 km south of the FDNPP, exhibited consecutive sexual maturation during the 2 years from April 2017 to May 2019, whereas sexual maturation of the gonads of specimens collected at Hiraiso was observed only in summer. The consecutive sexual maturation of the gonads of the specimens collected at Okuma might not represent a temporary phenomenon but rather a site-specific phenotype, possibly caused by specific environmental factors near the FDNPP.
Crystallographic texture dependent bulk anisotropic elastic response of additively manufactured Ti6Al4V
Authors: Pantawane Mangesh V. , Yang Teng , Jin Yuqi , Joshi Sameehan S. , Dasari Sriswaroop , Sharma Abhishek , Krokhin Arkadii , Srinivasan Srivilliputhur G. , Banerjee Rajarshi , Neogi Arup , Dahotre Narendra B.
Published: January 2021

Rapid thermokinetics associated with laser-based additive manufacturing produces strong bulk crystallographic texture in the printed component. The present study identifies such a bulk texture effect on elastic anisotropy in laser powder bed fused Ti6Al4V by employing an effective bulk modulus elastography technique coupled with ultrasound shear wave velocity measurement at a frequency of 20 MHz inside the material. The combined technique identified significant attenuation of shear velocity from 3322 ± 20.12 to 3240 ± 21.01 m/s at 45$$^\circ$$

∘

and 90$$^\circ$$

∘

orientations of shear wave plane with respect to the build plane of printed block of Ti6Al4V. Correspondingly, the reduction in shear modulus from 48.46 ± 0.82 to 46.40 ± 0.88 GPa was obtained at these orientations. Such attenuation is rationalized based on the orientations of $$\alpha ^\prime$$

α
′

crystallographic variants within prior columnar $$\beta$$
β
grains in additively manufactured Ti6Al4V.
Body roll amplitude and timing in backstroke swimming and their differences from front crawl at the same swimming intensities
Authors: Gonjo Tomohiro , Fernandes Ricardo J. , Vilas-Boas João Paulo , Sanders Ross
Published: January 2021

The current study investigated body roll amplitude and timing of its peak in backstroke and compared them with front crawl swimming. Nineteen anatomical landmarks were digitised using 80 swimming trial videos (ten swimmers × two techniques × four intensities) recorded by two above- and four below-water cameras. One upper-limb cycle was analysed for each trial, and shoulder and hip roll, whole-body roll (WBR), and WBR due to the buoyant torque (WBRBT) were obtained. Main effects of intensity and technique on the amplitude and timing to reach the peak in those variables were assessed by two-way repeated-measures ANOVA. Swimmers decreased their WBRBT amplitude with an increase in the intensity in both techniques (p ≤ 0.005). The same result was observed for the amplitude of WBR, shoulder roll, and hip roll only in front crawl (p ≤ 0.017). Swimmers maintained the timing of peak WBRBT in both techniques, while they shifted the timing of WBR and hip roll peak toward the beginning of the cycle when increasing the intensity in front crawl (p ≤ 0.017). In conclusion, swimmers maintain the amplitude of WBR, shoulder roll, and hip roll in backstroke when the intensity increases, whereas they reduce the amplitude of all rolls in front crawl.
Assessing seal carcasses potentially subjected to grey seal predation
Authors: van Neer Abbo , Gross Stephanie , Kesselring Tina , Grilo Miguel L. , Ludes-Wehrmeister Eva , Roncon Giulia , Siebert Ursula
Published: January 2021

In order to conduct an objective evaluation of potential ecological effects of grey seal predation on marine mammals, it is essential to establish a broad knowledge base helping in the thorough identification of such cases during post-mortem examination. The aim of this work is to report and discuss outcomes resulting from a retrospective evaluation of harbour (Phoca vitulina) and grey seal (Halichoerus grypus) stranding and necropsy data (n = 3274). In addition, the results are compared to a recent case of definite grey seal predation from Germany as well as reports from other countries. Carcasses potentially subjected to grey seal predation show severe lacerations with a circular pattern leaving a smooth, linear and cut-like wound margin. Large parts of skin and underlying tissue are detached from the body and loss of blubber is common. Occurrence frequencies of encountered lesions are presented and a list of parameters to be used for the assessment of similar cases as well as a complementary decision tree are suggested. With the proposed parameters, categories and tools, a baseline can be built in order to facilitate the standardised recognition of predation cases during post-mortem examinations of seals between groups working with populations across several geographic ranges.
Schizotypy in Parkinson’s disease predicts dopamine-associated psychosis
Authors: Oehrn Carina R. , Schönenkorb Jana , Timmermann Lars , Nenadić Igor , Weber Immo , Grant Phillip
Published: January 2021

Psychosis is the most common neuropsychiatric side-effect of dopaminergic therapy in Parkinson’s disease (PD). It is still unknown which factors determine individual proneness to psychotic symptoms. Schizotypy is a multifaceted personality trait related to psychosis-proneness and dopaminergic neurotransmission in healthy subjects. We investigated whether (1) PD patients exhibit lower schizotypy than controls and (2) dopamine-related neuropsychiatric side-effects can be predicted by higher schizotypy. In this cross-sectional study, we used the Oxford-Liverpool Inventory of Feelings and Experiences in 56 PD patients (12 women, mean ± sd age: 61 ± 11 years) receiving their usual dopaminergic medication and 32 age-matched healthy controls (n = 32; 18 women, mean ± sd age: 57 ± 6 years). We further compared schizotypy scores of patients with (n = 18, 32.1%) and without previously experienced psychosis. We found that patients exhibited lower schizotypy than controls. Further, patients with a history of psychosis exhibited higher schizotypy than patients without these symptoms. Using an information theoretic measure and a machine learning approach, we show that schizotypy yields the greatest predictive value for dopamine-associated hallucinations compared to other patient characteristics and disease related factors. Our results indicate an overlap between neural networks associated with schizotypy and the pathophysiology of PD and a relationship between schizotypy and psychotic side-effects of dopaminergic medication.
Development of a cost-effective medium for Photorhabdus temperata bioinsecticide production from wastewater and exploration of performance kinetic
Authors: Keskes Sahar , Jallouli Wafa , Atitallah Imen Ben , Driss Fatma , Sahli Emna , Chamkha Mohamed , Tounsi Slim
Published: January 2021

This study investigates the optimization of the culture conditions for enhancingPhotorhabdus temperatabiopesticide production using wastewater (WS4) as a raw material. Box-Behnken design (BBD) was used to evaluate the effects of carbon to nitrogen ratio (C/N), sodium chloride concentration and inoculum size onP. temperatabiomass production and insecticidal activity. For an enhanced biopesticide production, the optimum operating conditions were as follows: inoculum size = 4%; C/N ratio = 12.5 and [NaCl] = 4 g/L for two responses. 1.95 and 2.75 fold improvements in oral toxicity and biomass production were respectively obtained in the cost-effective medium developed in this study (WS4 I) using the three variables at their optimal values. Under the optimized conditions, WS4 I-grown cells exhibited higher membrane integrity according to flow cytometry analysis since dead cells presented only 9.2% compared to 29.2% in WS4. From batch fermentations carried out in WS4 I and WS4,P. temperatakinetic parameters in terms of biomass production and substrate consumption rates were modeled. The obtained results showed that the maximum specific growth rate in WS4 I was of 0.43 h−1while that obtained in WS4 was of 0.14 h−1. In addition, the efficiency ofP. temperatato metabolize organic carbon was enhanced by optimizing the culture conditions. It reached 72.66% instead of 46.18% in the control fermentation after 10 h of incubation. Under the optimized conditions,P. temperatacells showed the highest specific consumption rate resulting in a toxin synthesis improvement.
The association of Coronavirus Disease-19 mortality and prior bacille Calmette-Guerin vaccination: a robust ecological analysis using unsupervised machine learning
Authors: Brooks Nathan A. , Puri Ankur , Garg Sanya , Nag Swapnika , Corbo Jacomo , Turabi Anas El , Kaka Noshir , Zemmel Rodney W. , Hegarty Paul K. , Kamat Ashish M.
Published: January 2021

Population-level data have suggested that bacille Calmette-Guerin (BCG) vaccination may lessen the severity of Coronavirus Disease-19 (COVID-19) prompting clinical trials in this area. Some reports have demonstrated conflicting results. We performed a robust, ecologic analysis comparing COVID-19 related mortality (CRM) between strictly selected countries based on BCG vaccination program status utilizing publicly available databases and machine learning methods to define the association between active BCG vaccination programs and CRM. Validation was performed using linear regression and country-specific modeling. CRM was lower for the majority of countries with a BCG vaccination policy for at least the preceding 15 years (BCG15). CRM increased significantly for each increase in the percent population over age 65. A higher total population of a country and BCG15 were significantly associated with improved CRM. There was a consistent association between countries with a BCG vaccination for the preceding 15 years, but not other vaccination programs, and CRM. BCG vaccination programs continued to be associated with decreased CRM even for populations < 40 years old where CRM events are less frequent.
Neural network-based modeling of the number of microbubbles generated with four circulation factors in cardiopulmonary bypass
Authors: Miyamoto Satoshi , Soh Zu , Okahara Shigeyuki , Furui Akira , Takasaki Taiichi , Katayama Keijiro , Takahashi Shinya , Tsuji Toshio
Published: January 2021

The need for the estimation of the number of microbubbles (MBs) in cardiopulmonary bypass surgery has been recognized among surgeons to avoid postoperative neurological complications. MBs that exceed the diameter of human capillaries may cause endothelial disruption as well as microvascular obstructions that block posterior capillary blood flow. In this paper, we analyzed the relationship between the number of microbubbles generated and four circulation factors, i.e., intraoperative suction flow rate, venous reservoir level, continuous blood viscosity and perfusion flow rate in cardiopulmonary bypass, and proposed a neural-networked model to estimate the number of microbubbles with the factors. Model parameters were determined in a machine-learning manner using experimental data with bovine blood as the perfusate. The estimation accuracy of the model, assessed by tenfold cross-validation, demonstrated that the number of MBs can be estimated with a determinant coefficientR2 = 0.9328 (p < 0.001). A significant increase in the residual error was found when each of four factors was excluded from the contributory variables. The study demonstrated the importance of four circulation factors in the prediction of the number of MBs and its capacity to eliminate potential postsurgical complication risks.
N-docosahexaenoylethanolamine reduces neuroinflammation and cognitive impairment after mild traumatic brain injury in rats
Authors: Ponomarenko Arina I. , Tyrtyshnaia Anna A. , Pislyagin Evgeny A. , Dyuizen Inessa V. , Sultanov Ruslan M. , Manzhulo Igor V.
Published: January 2021

At present, there is a growing interest in the study of the neurotropic activity of polyunsaturated fatty acids ethanolamides (N-acylethanolamines). N-docosahexaenoylethanolamine (DHEA, synaptamide) is an endogenous metabolite and structural analogue of anandamide, a widely studied endocannabinoid derived from arachidonic acid. The results of this study demonstrate that DHEA, when administered subcutaneously (10 mg/kg/day, 7 days), promotes cognitive recovery in rats subjected to mild traumatic brain injury (mTBI). In the cerebral cortex of experimental animals, we analyzed the dynamics of Iba-1-positive microglia activity changes and the expression of pro-inflammatory markers (IL1β, IL6, CD86). We used immortalized mouse microglial cells (SIM-A9) to assess the effects of DHEA on LPS-induced cytokines/ROS/NO/nitrite, as well as on CD206 (anti-inflammatory microglia) and the antioxidant enzyme superoxide dismutase (SOD) production. In vivo and in vitro experiments showed that DHEA: (1) improves indicators of anxiety and long-term memory; (2) inhibits the pro-inflammatory microglial cells activity; (3) decrease the level of pro-inflammatory cytokines/ROS/NO/nitrites; (4) increase CD206 and SOD production. In general, the results of this study indicate that DHEA has a complex effect on the neuroinflammation processes, which indicates its high therapeutic potential.
Transcriptome and phytochemical analyses provide insights into the organic sulfur pathway in Allium hirtifolium
Authors: Soorni Aboozar , Akrami Amir Mohammad , Abolghasemi Reza , Vahedi Maryam
Published: January 2021

Alliumis one of the well-known genera of the Amaryllidaceae family, which contains over 780 species. Onions, garlic, leeks, and shallots are the most important species of this genus.Allium hirtifolium(shallot) is a rich source of proteins, carbohydrates, lipids, amino acids, and bioactive compounds such as organic sulfur compounds with an expansive range of biological activities and medicinal attributes. To identify the putative compounds and genes involved in the organic sulfur pathway, we applied GC–MS and RNA-seq techniques for the bulb, stem, and flower tissues ofA. hirtifolium.The essential oil analysis revealed the maximum amount of sulfur compounds in stem against flower and bulb tissues. Transcriptome profiling showed 6155, 6494, and 4259 DEGs for bulb vs. flower, bulb vs. stem, and flower vs. stem, respectively. Overall, more genes were identified as being up-regulated rather than down-regulated in flower tissue compared to the stem and bulb tissues. Our findings in accordance with other results from different papers, suggest that carbohydrates are vital to bulb formation and development because a high number of identified DEGs (586 genes) were mapped to carbohydrate metabolism. This study has detected the genes in the organic sulfur pathway and indicated that the alliinase gene shows a high variability among different tissues. In general, this study formed a useful genomic resource data to explore tissue-specific sulfur pathway inA. hirtifolium, which is helpful for functional breeding.
Distinct bacterial community structure and composition along different cowpea producing ecoregions in Northeastern Brazil
Authors: de Sousa Lopes Luciana , Mendes Lucas William , Antunes Jadson Emanuel Lopes , de Souza Oliveira Louise Melo , Melo Vania Maria Maciel , de Araujo Pereira Arthur Prudêncio , da Costa Antonio Félix , de Paula Oliveira José , Martínez Cosme Rafael , Figueiredo Marcia do Vale Barreto , Araujo Ademir Sérgio Ferreira
Published: January 2021

Soil microbial communities represent the largest biodiversity on Earth, holding an important role in promoting plant growth and productivity. However, the knowledge about how soil factors modulate the bacteria community structure and distribution in tropical regions remain poorly understood, mainly in different cowpea producing ecoregions belonging to Northeastern Brazil. This study addressed the bacterial community along three different ecoregions (Mata, Sertão, and Agreste) through the16S rRNA gene sequencing. The results showed that soil factors, such as Al3+, sand, Na+, cation exchange excel, and total organic C, influenced the bacterial community and could be a predictor of the distinct performance of cowpea production. Also, the bacterial community changed between different ecoregions, and some keystone groups related to plant-growth promotion, such as Bradyrhizobium, Bacillales, Rhizobiales, and Solibacillus, were correlated to cowpea yield, so revealing that the soil microbiome has a primordial role in plant productivity. Here, we provide evidence that bacterial groups related to nutrient cycling can help us to increase cowpea efficiency and we suggest that a better microbiome knowledge can contribute to improving the agricultural performance.
Lumbar lordosis morphology correlates to pelvic incidence and erector spinae muscularity
Authors: Li Yang , Sun Jianmin , Wang Guodong
Published: January 2021

The retrospective study aimed to investigate the relationship between lumbar lordosis morphology, pelvic incidence and paraspinal muscle. It enrolled asymptomatic adult volunteers aged between 18 and 45 years old. Lumbar lordosis morphology, consisting of total lumbar lordosis (LL), proximal lumbar lordosis (PLL), distal lumbar lordosis (DLL), lumbar lordosis apex (LLA) and inflexion point, was evaluated, as well as pelvic incidence (PI) and muscularity of erector spinae (ES) and multifidus. Pearson correlation was performed to analyze the relationship between each other parameter. Cases were stratified according to pelvic incidence (very low < 30°, low 30°–45°, moderate 45°–60°, and high > 60°), comparison between groups was performed by univariance analysis. 87 asymptomatic adult volunteers (33 females and 54 males) were included in the study. PLL revealed a correlation with LLA (r = 0.603, p = 0.002) and inflexion point (r = 0.536, p = 0.004), but did not DLL with LL apex (r = 0.204, p = 0.058) or inflexion point (r = 0.210, p = 0.051). PI revealed a greater correlation with PLL (r = −0.673, p < 0.001) than with DLL (r = −0.237, p = 0.045). Linear stepwise regression analysis also exhibited the correlation between PI and PLL (R2 = 0.452, PLL = 16.2–0.61 * PI, p < 0.001). ES muscularity correlated with LL apex (r = −0.279, p = 0.014) and inflexion point (r = −0.227, p = 0.047). Stratification by PI demonstrated PLL increased across groups (p < 0.001), but DLL was comparable between low and moderate PI group (p = 0.329). Lumbar lordosis morphology appears to accommodate to pelvic incidence and erector spinae muscularity. Proximal lumbar lordosis has a bigger correlation with pelvic incidence than the distal lumbar lordosis. The results are helpful for restoring a rational lumbar lordosis shape in long fusion surgery.
Carbon storage and sequestration potential in aboveground biomass of bamboos in North East India
Authors: Devi Angom Sarjubala , Singh Kshetrimayum Suresh
Published: January 2021

The Northeastern hilly states of India harbor nearly 90 species of bamboos, 41 of which are endemic to the region. Estimation of C-storage and C-sequestration in aboveground biomass of two common bamboo species namely Bambusa tulda and Dendrocalamus longispathus was carried out in Mizoram-one of the eight states of Northeastern India. Recording of density of culms was done by quadrate method and harvesting of culms was done to estimate the aboveground biomass. C-storage in different components of the culms was found out for three age classes namely 1, 2 and ≥ 3 year old culms. Aboveground biomass ranged from 73.58 to 127 Mg/ha in Bambusa tulda and 115 to 150 Mg/ha in Dendrocalamus longispathus. Culm density and aboveground biomass were maximum in the ≥ 3 year age class in both the species. C-storage ranged from 36.34 to 64.00 Mg/ha in Bambusa tulda and 50.11 to 65.16 Mg/ha in Dendrocalamus longispathus. Although having lower aboveground biomass the rate of C-sequestration was higher in Bambusa tulda with 27.79 Mg/ha/year than Dendrocalamus longispathus which have 15.36 Mg/ha/year. The reason was attributed to higher increment of culm density and DBH of the older age class in the second year study period in Bambusa tulda.