bluuebunny/crossref_metadata_2025 huggingface dataset:
Strategi Mengembangkan Modal Sosial Kelompok Wanita Tani (KWT) Dalam Meningkatkan Ketahanan Pangan dan Kesetaraan Gender
Authors: Setyadika Shyellin Putri , Dwicahyo Bambang Kusumo , Ma'rifah Devi Cahyati , Putri Cantika , Prasetyo Ratna Azis
Published: April 2024

The purpose of this research is to understand the role of social capital as well as to understand the strategies of KWT Merak and KWT Merak Jaya in improving food security and gender equality in Manuk Village, Ponorogo Regency, how women demonstrate their role in the form of implementing knowledge and skills in agriculture. Food security shown through this research is seen from 6 dimensions, namely availability, access, utilization, stability, agency, and sustainability. The method used was observation of the two demonstration plots and members' yards and indepth interviews with the heads and members of KWT Merak and KWT Merak Jaya to explore their processes in managing the groups. From the data, data interpretation was conducted in accordance with the problem formulation.  The strategy of KWT Merak and KWT Merak Jaya in improving food security and gender equality is seen from their independence to earn income that can help the economy, to cooperation with the support of the village government to continue this group. The strategy in question is in accordance with the theory of social capital by Robert D. Putnam which reviews social capital from values/norms, trust, and networks between agents in a group.
Ketosis risk derived from mid-infrared predicted traits and its relationship with herd milk yield, health and fertility
Authors: Köck Astrid , Dale Laura Monica , Werner Andreas , Mayerhofer Martin , Auer Franz-Josef , Egger-Danner Christa
Published: April 2024

Milk analysis using mid-infrared spectroscopy (MIR) is a fast and inexpensive way of examining milk samples on a large scale for fat, protein, lactose, urea and many other novel traits. A new indicator trait for ketosis, KetoMIR, which is based on clinical ketosis diagnoses and MIR-predicted traits, was developed by the Regional State Association for Performance and Quality Inspection in Animal Breeding of Baden Württemberg in 2015. The KetoMIR result is available for each cow at milk recording during the first 120 days in milk and presented to farmers in three classes: 1 = low ketosis risk, 2 = moderate ketosis risk and 3 = high ketosis risk. The aim of the current study was to analyze the phenotypic relationships between KetoMIR and milk yield, fertility and health at the herd level. Annual herd reports from 12,909 herds with an average herd size of 27 cows were available for the analyses. Overall, the mean incidence of ketosis (KetoMIR risk class 2 or 3) at the herd level was 14.0%. Farms with the lowest ketosis risk (≤10% of cows in the herd with a moderate or high ketosis risk) differed in all variables from the farms with the highest ketosis risk (>50% of cows in the herd with a moderate or high ketosis risk). The increased ketosis risk based on KetoMIR was associated with lower average herd milk yield (-1,975 kg milk). Mean herd somatic cell count in first and higher lactations was increased by 60,500 and 134,400 cells/ml, respectively. The interval from calving to first service was prolonged by +36.5 days, as was the calving interval with +58.2 days. The newly developed KetoMIR trait may be used in ketosis prevention programs.
Enhancing anti-neuroinflammation effect of X-ray-triggered RuFe-based metal-organic framework with dual enzyme-like activities
Authors: Chen Shurui , Gao Jinpeng , Lin Sen , Zhao Haosen
Published: April 2024

Traumatic spinal cord injury (SCI), often resulting from external physical trauma, initiates a series of complex pathophysiological cascades, with severe cases leading to paralysis and presenting significant clinical challenges. Traditional diagnostic and therapeutic approaches, particularly X-ray imaging, are prevalent in clinical practice, yet the limited efficacy and notable side effects of pharmacological treatments at the injury site continue to pose substantial hurdles. Addressing these challenges, recent advancements have been made in the development of multifunctional nanotechnology and synergistic therapies, enhancing both the efficacy and safety of radiographic techniques. In this context, we have developed an innovative nerve regeneration and neuroprotection nanoplatform utilizing an X-ray-triggered, on-demand RuFe metal-organic framework (P-RuFe) for SCI recovery. This platform is designed to simulate the enzymatic activities of catalase and superoxide dismutase, effectively reducing the production of reactive oxygen species, and to remove free radicals and reactive nitrogen species, thereby protecting cells from oxidative stress-induced damage. In vivo studies have shown that the combination of P-RuFe and X-ray treatment significantly reduces mortality in SCI mouse models and promotes spinal cord repair by inhibiting glial cell proliferation and neuroinflammation. P-RuFe demonstrates excellent potential as a safe, effective scavenger of reactive oxygen and nitrogen species, offering good stability, biocompatibility, and high catalytic activity, and thus holds promise for the treatment of inflammation-related diseases.
A submicron forest-like silicon surface promotes bone regeneration by regulating macrophage polarization
Authors: Sun Guo , Shu Tianyu , Ma Shaoyang , Li Meng , Qu Zhiguo , Li Ang
Published: April 2024

Introduction: Silicon is a major trace element in humans and a prospective supporting biomaterial to bone regeneration. Submicron silicon pillars, as a representative surface topography of silicon-based biomaterials, can regulate macrophage and osteoblastic cell responses. However, the design of submicron silicon pillars for promoting bone regeneration still needs to be optimized. In this study, we proposed a submicron forest-like (Fore) silicon surface (Fore) based on photoetching. The smooth (Smo) silicon surface and photoetched regular (Regu) silicon pillar surface were used for comparison in the bone regeneration evaluation.

Methods: Surface parameters were investigated using a field emission scanning electron microscope, atomic force microscope, and contact angle instrument. The regulatory effect of macrophage polarization and succedent osteogenesis was studied using Raw264.7, MC3T3-E1, and rBMSCs. Finally, a mouse calvarial defect model was used for evaluating the promoting effect of bone regeneration on the three surfaces.

Results: The results showed that the Fore surface can increase the expression of M2-polarized markers (CD163 and CD206) and decrease the expression of inflammatory cytokines, including interleukin-6 (IL-6) and tumor necrosis factor alpha (TNF-α). Fore surface can promote the osteogenesis in MC3T3-E1 cells and osteoblastic differentiation of rBMSCs. Furthermore, the volume fraction of new bone and the thickness of trabeculae on the Fore surface were significantly increased, and the expression of RANKL was downregulated. In summary, the upregulation of macrophage M2 polarization on the Fore surface contributed to enhanced osteogenesis in vitro and accelerated bone regeneration in vivo.

Discussion: This study strengthens our understanding of the topographic design for developing future silicon-based biomaterials.
Mechanical and histological properties of native medial menisci compared to allograph medial menisci in the osteoarthritic knee
Authors: Weiske Max , Riedel Bianca , Kubosch Eva Johanna , Mayr Hermann O. , Schmal Hagen , Seidenstuecker Michael
Published: April 2024

This study was designed to provide information on how the menisci change over the course of osteoarthritis, particularly with regard to their mechanical properties. The aim was to determine the difference between healthy menisci (fresh frozen meniscal transplants) and menisci harvested during total knee arthroplasty. The latter allows the grading of age-related and osteoarthritic changes in the menisci on macroscopic and microscopic levels. A total of 10 menisci from arthritic knee joints (medial) harvested during total knee arthroplasty were used and compared with 10 medial fresh frozen meniscal transplants. The mechanical measurements were carried out on a Mach-1 testing machine using indentation testing to determine the instantaneous modulus and the thickness of the menisci. The specimens were then embedded in paraffin, sectioned on a microtome, and stained with hematoxylin–eosin and safranin-O. All measurements were divided into the anterior horn, pars intermedia, and posterior horn. There was no significant difference in the instantaneous modulus for the posterior horn in the fresh frozen menisci with 0.27 ± 0.1 MPa compared to the arthritic menisci with 0.18 ± 0.03 MPa. No significant difference could be determined for the meniscus thicknesses. There was a significant difference in the safranin-O staining. There were also significant differences in the Pauli score: the arthrosis menisci showed a sum score that was, on average, four times higher than the sum score of the fresh frozen menisci. In the present study, it could be shown very well that there are significant differences in the mechanical properties as well as in the macroscopic and histopathological scores, such as the Pauli score, between the fresh frozen meniscus allografts considered healthy and osteoarthritic menisci resulting from total knee arthroplasty. With a degradation score of 3 (Pauli), the instantaneous modulus was reduced by more than 50% compared to healthy controls. More importantly, however, the fresh frozen menisci only show a grade 2 when converting the sum values into grades, where a grade 2 indicates slight degeneration. This is interesting because fresh frozen meniscus transplants were always considered healthy in previous publications and should, therefore, actually have a grade 1.
Effect of metformin adjunct therapy on cardiometabolic parameters in Indian adolescents with type 1 diabetes: a randomized controlled trial
Authors: Mondkar Shruti , Khandagale Sukeshini , Shah Nikhil , Khadilkar Anuradha , Oza Chirantap , Bhor Shital , Gondhalekar Ketan , Wagle Aneeta , Kajale Neha , Khadilkar Vaman
Published: April 2024

Introduction

Insulin resistance is being increasingly reported in type-1 Diabetes (T1D) and is known to accelerate microvascular complications. The Asian Indian population has a higher risk of double diabetes development compared to Caucasians. Hence, we studied the effect of adding Metformin to standard insulin therapy on glycemic control, insulin sensitivity (IS), cardiometabolic parameters and body composition in Indian adolescents with T1D.

Methods

A Randomized controlled trial was conducted spanning 9 months (Registration number:CTRI/2019/11/022126). Inclusion: Age 10-19 years, T1D duration>1year, HbA1c>8% Exclusion: Uncontrolled vascular complications/comorbidities, Metformin intolerance, concomitant drugs affecting insulin sensitivity. Participants were randomized to Metformin/Placebo (n=41 each) groups and age, sex, duration-matched. Assessments were performed at baseline, 3 and 9 months.

Results

82 participants aged 14.7 ± 3years (40 females) were enrolled, with a mean diabetes duration of 5.2 ± 2.3 years. Over 9 months, HbA1c decreased significantly by 0.8 (95% confidence interval: -1.2 to -0.3) from 9.8 ± 1.8% to 9.1 ± 1.7% on Metformin but remained largely unchanged (difference of 0.2, 95% confidence interval: -0.7 to 0.2) i.e. 9.9 ± 1.6% and 9.7 ± 2.2% on placebo. HbA1c improvement correlated negatively with baseline IS (EGDR:r= -0.3;SEARCH:r = -0.24, p<0.05) implying better HbA1c-lowering in those with decreased initial IS. CGM-based glycemic variability (standard deviation) reduced by 6.3 mg/dL (95% confidence interval: -12.9 to 0.2) from 100.2 ± 19.1 mg/dL to 93.7 ± 19.9 mg/dL in those on Metformin (p=0.05) but not placebo (94.0 ± 20.5; 90.0 ± 22.6 mg/dL). Insulin sensitivity: CACTIexa & SEARCH scores demonstrated no change with Metformin but significant worsening on placebo. Significant increase in LDL-C(42%), total cholesterol(133.6 to 151.1 mg/dL), triglyceride (60.0 to 88.0 mg/dL) and carotid intima-media thickness was noted on placebo but not Metformin. Weight, BMI, fat Z-scores increased significantly on placebo but not Metformin. Adverse events (AE) were minor; AE, compliance and safety parameters were similar between the two groups.

Conclusion

Metformin as an adjunct to insulin in Asian Indian adolescents with T1D demonstrated beneficial effect on glycemic control, glycemic variability, IS, lipid profile, vascular function, weight and body fat, with a good safety profile when administered for 9 months.
On the quantitative limits for triggering drought anticipatory actions in Mindanao, the Philippines
Authors: Wolski Piotr , Crespo Olivier , Tadross Mark , Khumalo Fidelity Z. , Du-Pont Tamika , Riquet Damien , Jones Catherine
Published: April 2024

Anticipatory Action (AA), which involves timely and informed actions ahead of a crisis/impact, is increasingly being used/promoted as a way to mitigate the impacts of extreme climatic hazards, including droughts. Actions are initiated in anticipation of the occurrence of the hazard and its impacts, and depend on the lead time, likelihood of impact, as well as the effectiveness of, and the capacity to undertake such actions. A decision to initiate actions is taken with a support of the so-called trigger model that forecasts likelihood or magnitude of expected impact. To build efficient and credible AA trigger models, quantitative assessments of relationships between observed climate and environmental conditions, weather/seasonal forecasts, and variables expressing current sectoral and societal vulnerability (collectively referred to as indicators) and expected impacts, are required at varied lead times. These quantitative assessments are needed to: (a) avoid over-weighting (placing excessive trust in) non-skillful indicators; (b) avoid using several co-varying and correlated indicators (over-emphasising their collective importance for the decision at hand); and (c) provide objective and defensible evidence for and consequently confidence in the AA trigger model. Motivated by the need to improve the current AA trigger model used for agricultural drought by FAO in Mindanao, a region of the Philippines which experiences periodic drought-related food insecurity, this study evaluates a range of climate and environmental indicators as a basis for developing a quantitative, objective trigger model. The analyses focus on: (i) an evaluation of efficacy of using a climate-only drought hazard index as an expression of impactful drought in the region, and (ii) an evaluation of the predictive utility of a set of indicators and formal statistical models combining these indicators, at various lead times. We show that the predictive utility of each indicator varies by season and lead time, highlight the varying skill of the trigger model and consequently advocate for transparent inclusion of model skill in the trigger mechanism.
Ductal stenting vs. surgical shunting in late presenting duct-dependent pulmonary circulation: a single-center experience
Authors: Prakoso Radityo , Simanjorang Christine Nathalina Sinaga , Kurniawati Yovi , Mendel Brian , Rahmat Budi , Zahara Rita , Rudiktyo Estu , Sakti Damba Dwisepto Aulia , Sukmawan Renan
Published: April 2024

Introduction

PDA stenting is an option to mBTT shunt for younger patients; nevertheless, few reports of this palliative approach have been made for the late presenter population, especially for patients who are older than 30 days but under 5 years. This study aimed to evaluate the clinical result and intra-hospital costs of ductal stenting in late-presenting patients in comparison to surgical shunting.

Methods

A single-center, retrospective cohort study was conducted from August 2016 to August 2022. This study included patients with pulmonary duct dependent CHD who were hospitalized for palliative therapy. The extracted data were baseline characteristics, clinical findings, supportive examination findings, complications, outcomes, and length of stay of the patients. Monitoring was carried out during treatment up to 30 days after the procedure.

Results

A total of 143 patients were included in the analysis; 43 patients underwent PDA stent and 100 patients underwent mBTT shunt with median age of PDA stent group 110 (31–1,498) days and mBTT shunt group 174.5 (30–1,651) days. Primary outcome composite was not significant in both groups including 30 days mortality [6 (14%) vs. 14 (14%), p = 1.000], reintervention [1 (2.3%) vs. 7 (7%), p = 0.436], and 30 days rehospitalization [0 (0%) vs. 2 (2%), p = 0.319]. Secondary outcome analysis showed shorter ICU length of stay in the PDA stent group [2 (0–16) days vs. 4 (1–63) days, p = 0.002].

Conclusions

PDA stent has an outcome that is non inferior from the mBTT shunt procedure in the composite outcome including 30 days mortality, reintervention, and 30 days rehospitalization but significantly lower in ICU length of stay.
Objective estimation of m-CTSIB balance test scores using wearable sensors and machine learning
Authors: Nassajpour Marjan , Shuqair Mustafa , Rosenfeld Amie , Tolea Magdalena I. , Galvin James E. , Ghoraani Behnaz
Published: April 2024

Accurate balance assessment is important in healthcare for identifying and managing conditions affecting stability and coordination. It plays a key role in preventing falls, understanding movement disorders, and designing appropriate therapeutic interventions across various age groups and medical conditions. However, traditional balance assessment methods often suffer from subjectivity, lack of comprehensive balance assessments and remote assessment capabilities, and reliance on specialized equipment and expert analysis. In response to these challenges, our study introduces an innovative approach for estimating scores on the Modified Clinical Test of Sensory Interaction on Balance (m-CTSIB). Utilizing wearable sensors and advanced machine learning algorithms, we offer an objective, accessible, and efficient method for balance assessment. We collected comprehensive movement data from 34 participants under four different sensory conditions using an array of inertial measurement unit (IMU) sensors coupled with a specialized system to evaluate ground truth m-CTSIB balance scores for our analysis. This data was then preprocessed, and an extensive array of features was extracted for analysis. To estimate the m-CTSIB scores, we applied Multiple Linear Regression (MLR), Support Vector Regression (SVR), and XGBOOST algorithms. Our subject-wise Leave-One-Out and 5-Fold cross-validation analysis demonstrated high accuracy and a strong correlation with ground truth balance scores, validating the effectiveness and reliability of our approach. Key insights were gained regarding the significance of specific movements, feature selection, and sensor placement in balance estimation. Notably, the XGBOOST model, utilizing the lumbar sensor data, achieved outstanding results in both methods, with Leave-One-Out cross-validation showing a correlation of 0.96 and a Mean Absolute Error (MAE) of 0.23 and 5-fold cross-validation showing comparable results with a correlation of 0.92 and an MAE of 0.23, confirming the model’s consistent performance. This finding underlines the potential of our method to revolutionize balance assessment practices, particularly in settings where traditional methods are impractical or inaccessible.
The prophylactic antiemetic therapies in management of differentiated thyroid cancer patients with radioactive iodine therapy: a single-center, non-randomized clinical trial
Authors: Li Xiao , Cao Jingjia , Wang Wenxiu , Zhu Xiaolu , Sun Yaru , Song Lei , Zhang Wei , Han Yong
Published: April 2024

Objective

The present study was to investigate three different single-drug regimens to show which was more effective to reduce radioactive iodine therapy (RAI) associated nausea and vomiting, and to compare the occurrence of long-term gastrointestinal diseases after RAI therapy.

Method

We performed a single-center, non-randomized clinical trial among patients who underwent RAI therapy from March 2016 to July 2022. Enrolled patients were divided into four cohorts based on the date of the treatment. cohort 1, with no preventive antiemetics; cohort 2, received 20 mg of pantoprazole per day for 3 days; cohort 3, received a 10 mg metoclopramide tablet two times daily for 3 days; cohort 4, oral ondansetron, 8 mg, twice daily for 3 days. The primary endpoints were proportion of patients who experience vomiting episodes and nausea during the 7-day hospital period. Secondary end points included Functional Living Index Emesis (FLIE) quality-of life questionnaires and the occurrence of gastrointestinal diseases.

Results

A total of 1755 patients were analyzed, comprised of 1299 (74.0%) women and 456 (26.0%) men, with a median age of 44 years (range 18–78 years). The characteristics of patient were similar within the four groups. 465 (26.4%) patients developed RAI-associated nausea, and 186 (14.4%) patients developed RAI-associated vomiting. The rate of nausea was significantly decreased in the patients who were taking ondansetron when compared with the other cohorts (P<0.05), while the rate of vomiting (≥6 episodes) was slightly lower. As secondary endpoint, FLIE measures ondansetron scored highly compared to other cohorts, from baseline (mean score of 110.53 ± 17.54) to day 7 (mean score of 105.56 ± 12.48). In addition, 48 (2.7%) patients were found to be with gastrointestinal diseases at the end of one year follow up. Multiple RAI therapy and higher dose of I-131 per body weight revealed a significantly independent risk factors of developing gastrointestinal disorders.

Conclusions

In conclusion, the present study demonstrated that short-term ondansetron could be an effective prophylactic agent in controlling RAI-associated nausea and vomiting. Furthermore, the risk of developing gastrointestinal disorders was significantly higher for patients with multiple RAI therapy and higher dose of I-131 per body weight.
Is there a causal association between gestational diabetes mellitus and immune mediators? A bidirectional Mendelian randomization analysis
Authors: Ji Zhangxin , Zhang Chenxu , Yuan Jingjing , He Qing , Zhang Xinyu , Yang Dongmei , Xu Na , Chu Jun
Published: April 2024

Background

Diabetes that only appears or is diagnosed during pregnancy is referred to as gestational diabetes mellitus (GDM). The maternal physiological immune profile is essential for a positive pregnancy outcome. However, the causal relationship between GDM and immunophenotypes is not fully defined.

Methods

Based on the high-density genetic variation data at the genome-wide level, we evaluated the logical associations between 731 specific immune mediators and GDM using bidirectional Mendelian randomization (MR). The inverse variance weighted (IVW) was the main method employed for MR analysis. We performed multiple methods to verify the robustness and dependability of the MR results, and sensitivity measures were applied to rule out potential heterogeneity and horizontal pleiotropy.

Results

A substantial causal association between several immune mediators and GDM was detected. After FDR testing, HLA DR++ monocyte %leukocyte and HLA DR on plasmacytoid DC were shown to increase the risk of GDM; in contrast, CD127 on CD28+ CD45RA+ CD8br and CD19 on PB/PC were shown to attenuate the effect of GDM. Moreover, the progression of GDM has been shown to decrease the maternal levels of CD39+ activated Treg AC, CD39+ activated Treg %CD4 Treg, CD39+ resting Treg AC, CD39+ resting Treg %CD4 Treg, and CD39+ CD8BR %T cell.

Conclusions

Our findings support a possible causal association between GDM and various immunophenotypes, thus facilitating the provision of multiple options for preventive recognition as well as for the diagnostic and therapeutic management of GDM in clinical practice.
Human induced pluripotent stem cells (hiPSCs) derived cells reflect tissue specificity found in patients with Leigh syndrome French Canadian variant (LSFC)
Authors: Gélinas Roselle , Lévesque Chloé , Thompson Legault Julie , Rivard Marie-Eve , Villeneuve Louis , Laprise Catherine , Rioux John D.
Published: April 2024

Leigh syndrome French Canadian type (LSFC) is a recessive neurodegenerative disease characterized by tissue-specific deficiency in cytochrome c oxidase (COX), the fourth complex in the oxidative phosphorylation system. LSFC is caused by mutations in the leucine rich pentatricopeptide repeat containing gene (LRPPRC). Most LSFC patients in Quebec are homozygous for an A354V substitution that causes a decrease in the expression of the LRPPRC protein. While LRPPRC is ubiquitously expressed and is involved in multiple cellular functions, tissue-specific expression of LRPPRC and COX activity is correlated with clinical features. In this proof-of-principle study, we developed human induced pluripotent stem cell (hiPSC)-based models from fibroblasts taken from a patient with LSFC, homozygous for the LRPPRC*354V allele, and from a control, homozygous for the LRPPRC*A354 allele. Specifically, for both of these fibroblast lines we generated hiPSC, hiPSC-derived cardiomyocytes (hiPSC-CMs) and hepatocyte-like cell (hiPSC-HLCs) lines, as well as the three germ layers. We observed that LRPPRC protein expression is reduced in all cell lines/layers derived from LSFC patient compared to control cells, with a reduction ranging from ∼70% in hiPSC-CMs to undetectable levels in hiPSC-HLC, reflecting tissue heterogeneity observed in patient tissues. We next performed exploratory analyses of these cell lines and observed that COX protein expression was reduced in all cell lines derived from LSFC patient compared to control cells. We also observed that mutant LRPPRC was associated with altered expression of key markers of endoplasmic reticulum stress response in hiPSC-HLCs but not in other cell types that were tested. While this demonstrates feasibility of the approach to experimentally study genotype-based differences that have tissue-specific impacts, this study will need to be extended to a larger number of patients and controls to not only validate the current observations but also to delve more deeply in the pathogenic mechanisms of LSFC.
Association between gut microbiota and spinal stenosis: a two-sample mendelian randomization study
Authors: Li Jian , Wei Jinpeng , Wang Jiani , Xu Tao , Wu Baofeng , Yang Shuhan , Jing Shaoze , Wu Hua , Hao Haihu
Published: April 2024

Introduction

Considerable evidence has unveiled a potential correlation between gut microbiota and spinal degenerative diseases. However, only limited studies have reported the direct association between gut microbiota and spinal stenosis. Hence, in this study, we aimed to clarify this relationship using a two-sample mendelian randomization (MR) approach.

Materials and Methods

Data for two-sample MR studies was collected and summarized from genome-wide association studies (GWAS) of gut microbiota (MiBioGen, n = 13, 266) and spinal stenosis (FinnGen Biobank, 9, 169 cases and 164, 682 controls). The inverse variance-weighted meta-analysis (IVW), complemented with weighted median, MR-Egger, weighted mode, and simple mode, was used to elucidate the causality between gut microbiota and spinal stenosis. In addition, we employed mendelian randomization pleiotropy residual sum and outlier (MR-PRESSO) and the MR-Egger intercept test to assess horizontal multiplicity. Cochran’s Q test to evaluate heterogeneity, and “leave-one-out” sensitivity analysis to determine the reliability of causality. Finally, an inverse MR analysis was performed to assess the reverse causality.

Results

The IVW results indicated that two gut microbial taxa, the genus Eubacterium fissicatena group and the genus Oxalobacter, have a potential causal relationship with spinal stenosis. Moreover, eight potential associations between genetic liability of the gut microbiota and spinal stenosis were implied. No significant heterogeneity of instrumental variables or horizontal pleiotropy were detected. In addition, “leave-one-out” sensitivity analysis confirmed the reliability of causality. Finally, the reverse MR analysis revealed that no proof to substantiate the discernible causative relationship between spinal stenosis and gut microbiota.

Conclusion

This analysis demonstrated a possible causal relationship between certain particular gut microbiota and the occurrence of spinal stenosis. Further studies focused on the mechanism of gut microbiota-mediated spinal stenosis can lay the groundwork for targeted prevention, monitoring, and treatment of spinal stenosis.
SOX13 is a novel prognostic biomarker and associates with immune infiltration in breast cancer
Authors: Gao Ting , Jiang Baohong , Zhou Yu , He Rongfang , Xie Liming , Li Yuehua
Published: April 2024

Background

The transcription factor, SOX13 is part of the SOX family. SOX proteins are crucial in the progression of many cancers, and some correlate with carcinogenesis. Nonetheless, the biological and clinical implications of SOX13 in human breast cancer (BC) remain rarely known.

Methods

We evaluated the survival and expression data of SOX13 in BC patients via the UNLCAL, GEPIA, TIMER, and Kaplan-Meier plotter databases. Immunohistochemistry (IHC) was used to verify clinical specimens. The gene alteration rates of SOX13 were acquired on the online web cBioportal. With the aid of the TCGA data, the association between SOX13 mRNA expression and copy number alterations (CNA) and methylation was determined. LinkedOmics was used to identify the genes that co-expressed with SOX13 and the regulators. Immune infiltration and tumor microenvironment evaluations were assessed by ImmuCellAI and TIMER2.0 databases. SOX13 correlated drug resistance analysis was performed using the GDSC2 database.

Results

Higher SOX13 expression was discovered in BC tissues in comparison to normal tissues. Moreover, increased gene mutation and amplification of SOX13 were found in BC. Patients with increased SOX13 expression levels showed worse overall survival (OS). Cox analysis showed that SOX13 independently served as a prognostic indicator for poor survival in BC. Further, the expression of SOX13 was also confirmed to be correlated with tumor microenvironment and diverse infiltration of immune cells. In terms of drug sensitivity analysis, we found higher expression level of SOX13 predicts a high IC50 value for most of 198 drugs which predicts drug resistance.

Conclusion

The present findings demonstrated that high expression of SOX13 negatively relates to prognosis and SOX13 plays an important role in cancer immunity. Therefore, SOX13 may potentially be adopted as a biomarker for predicting BC prognosis and infiltration of immune cells.
The influence of micro-scale thermal habitat on the movements of juvenile white sharks in their Southern California aggregation sites
Authors: Spurgeon Emily , Thompson Marten L. , Alexander Mitchell D. , Anderson James M. , Rex Patrick T. , Stirling Brian , Abbott Kevin , Lowe Christopher G.
Published: April 2024

While juvenile white sharks (JWS) can display regional endothermy, the need to maintain internal temperatures within an energetically favorable range likely drives thermoregulatory movements to maximize growth and foraging efficiency. Many JWS from the northeastern Pacific population aggregate seasonally in nearshore nursery habitats throughout the Southern California Bight and historic data show that inter-seasonal movement patterns may be heavily dependent on ambient water temperature. However, the degree to which micro-scale (e.g., ~10 m2) water temperature heterogeneity influences JWS three-dimensional movement within nearshore aggregation sites is unknown. High-resolution temperature and passive acoustic-telemetry geo-positional data were used to quantify how temperature and vertical thermal stratification influenced JWS movement using several modeling approaches. JWS selected for water temperatures between 16 – 22°C and depths shallower than 2 m. Sharks occupied deeper waters during dawn and dusk periods, and their distance from the seafloor and spatial orientation of their depth distribution was significantly related to the thermal structure of the water column across the monitored area. Tagged sharks remained above a 16°C thermal threshold and altered their horizontal and vertical distributions accordingly. While high-resolution movement and environmental data provide improved predictability of micro-scale habitat use and distribution, other variables such as prey distribution, behavior, and competition would further improve habitat use models for this highly mobile species.
Lost in the dark: Antipatharia-Symbiodiniaceae association in the deep waters of the Red Sea
Authors: Vicario Silvia , Terraneo Tullia I. , Bocanegra Castano Carolina , Chimienti Giovanni , Oury Nicolas , Vimercati Silvia , Hume Benjamin C. C. , Marchese Fabio , Nolan Megan K. B. , Eweida Ameer A. , Purkis Sam J. , Rodrigue Mattie , Pieribone Vincent , Qurban Mohammed , Duarte Carlos M. , Benzoni Francesca
Published: April 2024

Black corals (Hexacorallia: Antipatharia) are a major component of mesophotic and deep marine ecosystems. Due to their preference for light deprived environments, black corals have historically been considered azooxanthellate, yet recent works have found them in association with dinoflagellates of the family Symbiodiniaceae down to 396 m depth. While corals and Symbiodiniaceae generally establish a symbiotic relationship in shallow water environments, the implications of this association is less well understood at deeper depths, where low light penetration cannot sustain efficient photosynthetic activity for the algae. However, Symbiodinaceae are not obligate autotrophs, and their capacity for heterotrophic feeding categorizes them as mixotrophs. In this study, we investigated the presence and diversity of Symbiodiniaceae associated with the deep-sea black coral Bathypathes thermophila (Antipatharia: Schizopathidae), collected from 204 to 655 m depth in the Saudi Arabian Red Sea. Using high-throughput sequencing of the ITS2 region, we report (1) the deepest record to date of Symbiodiniaceae associated with an anthozoan from 655 m, and (2) the first Red Sea record of Antipatharia in association with Symbiodiniaceae. Our analyses revealed that 14 out of 27 colonies of B. thermophila were associated with Symbiodiniaceae of the genera Cladocopium and Durusdinium. We unveiled 16 novel ITS2 type profiles, possibly unique to black corals and/or to these depths, along with seven profiles that were already known from shallow-water hard corals. No significant pattern was detected in terms of community diversity in relation to depth or sampling locality. Our study supports the existence of black corals-Symbiodiniaceae association and warrants further research to better understand the evolutionary processes and physiological mechanisms driving this association, specifically in light deprived environments.
Scaled mass index derived from aerial photogrammetry associated with predicted metabolic pathway disruptions in free-ranging St. Lawrence Estuary belugas
Authors: Sherrill Meredith , Bernier-Graveline Alexandre , Ewald Jessica , Pang Zhiqiang , Moisan Michel , Marzelière Mathieu , Muzzy Maris , Romano Tracy A. , Michaud Robert , Verreault Jonathan
Published: April 2024

The St. Lawrence Estuary (SLE) belugas (Quebec, Canada) are an endangered population whose numbers remain low despite ongoing conservation efforts. Multiple anthropogenic factors and changing environmental conditions are thought to have contributed to the recent 20-year decline in blubber fatty acid concentrations reported in stranded SLE belugas. Despite this evidence that energy reserves within the population are declining, there is currently no method for estimating the body condition of free-ranging animals. The potential metabolic consequences of declining fat reserves have also yet to be explored. The objectives of this study were to use unmanned aerial vehicle (UAV)-based photogrammetry to estimate the scaled mass index (SMI) of free-ranging SLE belugas, and to compare this proxy of body condition to the lipidome of outer-layer blubber samples collected from the same individuals via remote biopsy darting. Morphometric analysis of aerial images (n = 44 SLE belugas), combined with data collected from animals under professional human care, produced SMI estimates (females: 807 ± 98 kg, males: 743 ± 39 kg) similar in range to those previously calculated for SLE beluga carcasses of known weight. A non-targeted lipidomic analysis followed by pathway enrichment analysis, identified metabolic pathways predicted to show altered activity in association with SMI in the blubber of free-ranging male SLE belugas (n = 27). Mapping of enriched pathways compared to the Kyoto Encyclopedia of Genes and Genomes (KEGG) metabolic pathways maps, revealed that enriched pathways pertained to the metabolism of multiple lipid classes including fatty acyls and glycerophospholipids. Vitamin A, Vitamin E, and tyrosine metabolism pathways were also enriched in correlation with SMI. This study provides the basis for the development of a non-invasive technique for estimating the body condition of free-ranging SLE belugas and identifies metabolic pathways that merit further exploration to improve our understanding of the potential metabolic impacts of energy loss in cetaceans.
Incidence rate of mortality and its predictors among tuberculosis and human immunodeficiency virus coinfected patients on antiretroviral therapy in Ethiopia: systematic review and meta-analysis
Authors: Derseh Nebiyu Mekonnen , Agimas Muluken Chanie , Aragaw Fantu Mamo , Birhan Tilahun Yemanu , Nigatu Solomon Gedlu , Alemayehu Meron Asmamaw , Tesfie Tigabu Kidie , Yehuala Tirualem Zeleke , Godana Tilahun Nega , Merid Mehari Woldemariam
Published: April 2024

Background

Tuberculosis (TB) is the leading cause of death among HIV-infected adults and children globally. Therefore, this study was aimed at determining the pooled mortality rate and its predictors among TB/HIV-coinfected patients in Ethiopia.

Methods

Extensive database searching was done via PubMed, EMBASE, SCOPUS, ScienceDirect, Google Scholar, and Google from the time of idea conception on March 1, 2023, to the last search via Google on March 31, 2023. A meta-analysis was performed using the random-effects model to determine the pooled mortality rate and its predictors among TB/HIV-coinfected patients. Heterogeneity was handled using subgroup analysis, meta-regression, and sensitivity analysis.

Results

Out of 2,100 records, 18 articles were included, with 26,291 total patients. The pooled incidence rate of mortality among TB/HIV patients was 12.49 (95% CI: 9.24–15.74) per 100 person-years observation (PYO); I2 = 96.9%. The mortality rate among children and adults was 5.10 per 100 PYO (95% CI: 2.15–8.01; I2 = 84.6%) and 15.78 per 100 PYO (95% CI: 10.84–20.73; I2 = 97.7%), respectively. Age ≥ 45 (pooled hazard ratios (PHR) 2.58, 95% CI: 2.00– 3.31), unemployed (PHR 2.17, 95% CI: 1.37–3.46), not HIV-disclosed (PHR = 2.79, 95% CI: 1.65–4.70), bedridden (PHR 5.89, 95% CI: 3.43–10.12), OI (PHR 3.5, 95% CI: 2.16–5.66), WHO stage IV (PHR 3.16, 95% CI: 2.18–4.58), BMI < 18.5 (PHR 4.11, 95% CI: 2.28–7.40), anemia (PHR 4.43, 95% CI: 2.73–7.18), EPTB 5.78, 95% CI: 2.61–12.78 significantly affected the mortality. The effect of TB on mortality was 1.95 times higher (PHR 1.95, 95% CI: 1.19–3.20; I2 = 0) than in TB-free individuals.

Conclusions

The mortality rate among TB/HIV-coinfected patients in Ethiopia was higher compared with many African countries. Many clinical factors were identified as significant risk factors for mortality. Therefore, TB/HIV program managers and clinicians need to design an intervention early.
Effects of coastal saline-alkali soil on rhizosphere microbial community and crop yield of cotton at different growth stages
Authors: Feng Guoyi , Wu Yajie , Yang Chuanzhen , Zhang Qian , Wang Shulin , Dong Ming , Wang Yan , Qi Hong , Guo Lixue
Published: April 2024

Soil salinization is a global constraint that significantly hampers agricultural production, with cotton being an important cash crop that is not immune to its detrimental effects. The rhizosphere microbiome plays a critical role in plant health and growth, which assists plants in resisting adverse abiotic stresses including soil salinization. This study explores the impact of soil salinization on cotton, including its effects on growth, yield, soil physical and chemical properties, as well as soil bacterial community structures. The results of β-diversity analysis showed that there were significant differences in bacterial communities in saline-alkali soil at different growth stages of cotton. Besides, the more severity of soil salinization, the more abundance ofProteobacteria,Bacteroidotaenriched in rhizosphere bacterial composition where the abundance ofAcidobacteriotaexhibited the opposite trend. And the co-occurrence network analysis showed that soil salinization affected the complexity of soil bacterial co-occurrence network. These findings provide valuable insights into the mechanisms by which soil salinization affects soil microorganisms in cotton rhizosphere soil and offer guidance for improving soil salinization using beneficial microorganisms.
Modifying soil bacterial communities in saline mudflats with organic acids and substrates
Authors: Liu Xiaoyu , Zhong Liang , Yang Ruixue , Wang Huiyan , Liu Xinbao , Xue Wei , Yang He , Shen Yixin , Li Jianlong , Sun Zhengguo
Published: April 2024

Aims

The high salinity of soil, nutrient scarcity, and poor aggregate structure limit the exploitation and utilization of coastal mudflat resources and the sustainable development of saline soil agriculture. In this paper, the effects of applying exogenous organic acids combined with biological substrate on the composition and diversity of soil bacterial community were studied in moderately saline mudflats in Jiangsu Province.

Methods

A combination of three exogenous organic acids (humic acid, fulvic acid, and citric acid) and four biological substrates (cottonseed hull, cow manure, grass charcoal, and pine needle) was set up set up on a coastal saline mudflat planted with a salt-tolerant forage grass, sweet sorghum. A total of 120 kg ha−1 of organic acids and 5,000 kg ha−1 of substrates were used, plus two treatments, CK without application of organic acids and substrates and CK0 in bare ground, for a total of 14 treatments.

Results

No significant difference was found in the alpha diversity of soil bacterial community among all treatments (p ≥ 0.05), with the fulvic acid composite pine needle (FPN) treatment showing the largest increase in each index. The beta diversity differed significantly (p < 0.05) among all treatments, and the difference between citric acid–grass charcoal (CGC) and CK treatments was greater than that of other treatments. All treatments were effective in increasing the number of bacterial ASVs and affecting the structural composition of the community. Citric acid–cow manure (CCM), FPN, and CGC treatments were found to be beneficial for increasing the relative abundance of Proteobacteria, Chloroflexi, and Actinobacteria, respectively. By contrast, all treatments triggered a decrease in the relative abundance of Acidobacteria.

Conclusion

Among the 12 different combinations of exogenous organic acid composite biomass substrates applied to the coastal beach, the CGC treatment was more conducive to increasing the relative abundance of the salt-tolerant bacteria Proteobacteria, Chloroflexi and Actinobacteria, and improving the community structure of soil bacteria. The FPN treatment was more conducive to increase the species diversity of the soil bacterial community and adjust the species composition of the bacterial community.
The spike-timing-dependent plasticity of VIP interneurons in motor cortex
Authors: McFarlan Amanda R. , Guo Connie , Gomez Isabella , Weinerman Chaim , Liang Tasha A. , Sjöström P. Jesper
Published: April 2024

The plasticity of inhibitory interneurons (INs) plays an important role in the organization and maintenance of cortical microcircuits. Given the many different IN types, there is an even greater diversity in synapse-type-specific plasticity learning rules at excitatory to excitatory (E→I), I→E, and I→I synapses. I→I synapses play a key disinhibitory role in cortical circuits. Because they typically target other INs, vasoactive intestinal peptide (VIP) INs are often featured in I→I→E disinhibition, which upregulates activity in nearby excitatory neurons. VIP IN dysregulation may thus lead to neuropathologies such as epilepsy. In spite of the important activity regulatory role of VIP INs, their long-term plasticity has not been described. Therefore, we characterized the phenomenology of spike-timing-dependent plasticity (STDP) at inputs and outputs of genetically defined VIP INs. Using a combination of whole-cell recording, 2-photon microscopy, and optogenetics, we explored I→I STDP at layer 2/3 (L2/3) VIP IN outputs onto L5 Martinotti cells (MCs) and basket cells (BCs). We found that VIP IN→MC synapses underwent causal long-term depression (LTD) that was presynaptically expressed. VIP IN→BC connections, however, did not undergo any detectable plasticity. Conversely, using extracellular stimulation, we explored E→I STDP at inputs to VIP INs which revealed long-term potentiation (LTP) for both causal and acausal timings. Taken together, our results demonstrate that VIP INs possess synapse-type-specific learning rules at their inputs and outputs. This suggests the possibility of harnessing VIP IN long-term plasticity to control activity-related neuropathologies such as epilepsy.
Population-level insights into temporal interference for focused deep brain neuromodulation
Authors: Yatsuda Kanata , Yu Wenwei , Gomez-Tames Jose
Published: April 2024

The ability to stimulate deep brain regions in a focal manner brings new opportunities for treating brain disorders. Temporal interference (TI) stimulation has been suggested as a method to achieve focused stimulation in deep brain targets. Individual-level knowledge of the interferential currents has permitted personalizing TI montage via subject-specific digital human head models, facilitating the estimation of interferential electric currents in the brain. While this individual approach offers a high degree of personalization, the significant intra-and inter-individual variability among specific head models poses challenges when comparing electric-field doses. Furthermore, MRI acquisition to develop a personalized head model, followed by precise methods for placing the optimized electrode positions, is complex and not always available in various clinical settings. Instead, the registration of individual electric fields into brain templates has offered insights into population-level effects and enabled montage optimization using common scalp landmarks. However, population-level knowledge of the interferential currents remains scarce. This work aimed to investigate the effectiveness of targeting deep brain areas using TI in different populations. The results showed a trade-off between deep stimulation and unwanted cortical neuromodulation, which is target-dependent at the group level. A consistent modulated electric field appeared in the deep brain target when the same montage was applied in different populations. However, the performance in terms of focality and variability varied when the same montage was used among populations. Also, group-level TI exhibited greater focality than tACS, reducing unwanted neuromodulation volume in the cortical part by at least 1.5 times, albeit with higher variability. These results provide valuable population-level insights when considering TI montage selection.