bluuebunny/crossref_metadata_2025 huggingface dataset:
Quantitative Evaluation of Macro-Nutrient Uptake by Cassava in a Tropical Savanna Climate
Authors: Janket Anon , Vorasoot Nimitr , Toomsan Banyong , Kaewpradit Wanwipa , Theerakulpisut Piyada , Holbrook Carl Corley , Kvien Craig K. , Jogloy Sanun , Banterng Poramate
Published: November 2021

Matching fertilization with crop needs is important for maximizing yields and reducing fertilizer losses. Seasonal variation in nutrient uptake dynamics is poorly understood and thus, the ability to optimize fertilization strategies is limited. This study aims to investigate the effects of planting dates on macronutrient uptake dynamics in cassava genotypes with full irrigation. The performance of cassava genotypes, i.e., CMR38-125-77, Kasetsart 50 and Rayong 11, were evaluated in the early rainy (ERS) and post rainy seasons (PRS) for two years using a randomized complete block design with four replicates. The plants were harvested at 1, 3, 6, 9 and 12 months. Planting dates had significant effects on the accumulation of dry matter and storage roots as well as nutrient uptakes and partitioning. On average, the total nutrient uptake per plant to produce 2831–3279 g of biomass with 1244–1810 g of storage roots in the ERS varied among cassava genotypes, ranging from 21.1–24.3 g N, 5.1–5.9 g P, 26.5–29.5 g K, 14.1–22.2 g Ca, 6.1–7.6 g Mg and 2.0–2.3 g S. The total nutrient uptake per plant to produce 3353–3824 g of biomass with 1604–2253 g of storage roots in the PRS ranged from 27.1–32.4 g N, 5.2–6.0 g P, 29.1–31.3 g K, 11.9–20.3 g Ca, 7.3–9.9 g Mg and 1.2–1.5 g S. In the ERS, the majority of the total nutrient uptake occurred at the early growth stages, whereas in the PRS, this occurred at the mid- to late growth stages. At final harvest, the percentages of nutrient removal by the storage roots for ERS were 24.7–36.0% N, 26.0–32.3% P, 43.4–51.5% K, 12.4–17.6% Ca, 22.2–31.5% Mg and 27.2–31.5% S, whereas in the PRS the percentages were 30.4–44.4% N, 33.3–41.6% P, 44.7–57.3% K, 12.0–15.1% Ca, 20.2–28.1% Mg and 12.0–25.4% S. CMR38-125-77 exhibited satisfactory performance in nutrient uptake, nutrient use efficiency and storage roots yield across the planting dates. The evidence obtained from this study would greatly facilitate more efficient adoption of precision agriculture in cassava production by applying recommended fertilizers, e.g., rates, kinds and timings, according to crop demand in each growing season in Thailand and for choosing superior cassava genotypes.
Influence of the Downwash Wind Field of Plant Protection UAV on Droplet Deposition Distribution Characteristics at Different Flight Heights
Authors: Lan Yubin , Qian Shicheng , Chen Shengde , Zhao Yingjie , Deng Xiaoling , Wang Guobin , Zang Yu , Wang Juan , Qiu Xingyan
Published: November 2021

The aerial spraying of pesticides by plant protection unmanned aerial vehicles (UAV) is a process in which the spray droplet deposition on target sites occurs under the influence of the downwash wind field. The downwash wind field is the most important factor affecting droplet deposition distribution characteristics in an aerial spray. To understand the mechanism of the downwash wind field, spray tests were conducted at different flight heights by using a DJI UAV, and the downwash wind field in the three-dimensional direction (X-directional wind, Y-crosswind, and Z-vertical wind) was measured by using a wind speed measurement system for UAV. Combined with the droplet deposition of aerial spray, the distribution characteristics of the downwash wind field and the influence of the downwash wind field on droplet deposition were studied. The results showed that it had obvious differences in the distribution of the downwash wind field for UAV at different flight heights. As the flight height increases, the downwash wind field in X-direction and Z-direction showed a strong to weak trend, while the downwash wind field in Y-direction showed an opposite trend. In addition, it was found that the downwash wind field in Y-direction and Z-direction both have a significant influence on droplet deposition. With the increase of flight height, the change of the downwash wind field led to a gradual decrease in droplet deposition in the effective spray area, and droplets deposited more uniformly. For the DJI T16 plant protection UAV in this test, the optimal flight height was 2.0 m, and the downwash wind field had a better improvement effect on droplet deposition. Therefore, in order to make full use of the downwash wind field of UAV, the appropriate flight height should be selected to improve droplet deposition of liquid pesticide and achieve a better control effect for crop disease and pests when UAV is used for aerial spray operations in the field. This study revealed the influence mechanism of the downwash wind field on droplet deposition of aerial spray, and proposed appropriate operation parameters from the perspective of practical operation. It was expected to provide data support for improving the operation quality of aerial spraying and the formulation of field operation specifications.
Hybrids Development between Greek Salvia Species and Their Drought Resistance Evaluation along with Salvia fruticosa, under Attapulgite-Amended Substrate
Authors: Papafotiou Maria , Martini Aikaterini N. , Papanikolaou Eleonora , Stylias Eleftherios G. , Kalantzis Anastasios
Published: November 2021

Aiming to obtain Salvia hybrids with ornamental value and high drought resistance, for xeriscaping, crossbreeding was made with Greek Salvia species. S. fruticosa and S. officinalis when used as seed parent were successfully crossed with S. pomifera ssp. pomifera, S. ringens and S. tomentosa, while when used as pollen parent it only succeeded between S. fruticosa and S. tomentosa. The growth of S. fruticosa and the four hybrids, S. officinalis × S. pomifera, S. officinalis × S. tomentosa, S. officinalis × S. ringens and S. fruticosa × S. ringens, selected for their ornamental traits, was evaluated under limited irrigation and modification of the substrate with attapulgite clay. The hybrids S. officinalis × S. ringens and S. officinalis × S. tomentosa developed a compact plant shape and most lateral shoots, desirable characteristics for potted plants and xeriscaping. All hybrids, especially S. officinalis × S. pomifera and S. officinalis × S. tomentosa, survived water stress better than S. fruticosa. Modification of the substrate with attapulgite, under limited irrigation, caused a decrease in the above ground/root biomass ratio in some hybrids and in S. fruticosa increased the dry weight of the root indicating increased drought resistance.
Complex Spectroscopic Study for Fusarium Genus Fungi Infection Diagnostics of “Zalp” Cultivar Oat
Authors: Pankin Dmitrii , Povolotckaia Anastasia , Kalinichev Alexey , Povolotskiy Alexey , Borisov Evgenii , Moskovskiy Maksim , Gulyaev Anatoly , Lavrov Aleksandr , Izmailov Andrey
Published: November 2021

At present, one of the critical problems in agriculture is the identification of cereals, including oats, infected by Fusarium spp. genus fungi. Timely diagnostics can prevent the further disease spread and help to identify the already stored infected grains. In this regard, the aim of this work is to develop the spectroscopic approaches that determine the infected grains. As an object of the investigation the “Zalp” cultivar oat, both healthy and infected grains of the 2020 harvest were chosen. The spectroscopic diagnostics included FTIR in the mid-IR region, Raman, and luminescence methods. Combination of chemometric tools with FTIR and Raman spectroscopy allowed obtaining approaches based on identified characteristic spectral features which may be used as infection markers. These approaches make it possible to detect the infection on the grain husk. The carotenoid type fungi pigment was identified within the resonance conditions of Raman scattering excitation. The luminescence study of infected oat husk revealed the presence of characteristic chlorophyll α peak which is absent in healthy grain husk.
Epiphytic Microbial Community and Post-Harvest Characteristics of Strawberry Fruits as Affected by Plant Nutritional Regime with Silicon
Authors: Valentinuzzi Fabio , Pii Youry , Borruso Luigimaria , Mimmo Tanja , Puglisi Edoardo , Trevisan Marco , Cesco Stefano
Published: November 2021

Despite being not essential to plants, Silicon (Si) has proven to have promoting effects on plants growth, yield, and resistance against biotic and abiotic stressors. The increase of concentration in specific minerals in plant tissues can also improve shelf-life, which, in fruits like strawberries, is also affected by the epiphytic microbial community. The present research was carried out to assess whether Si biofortification of strawberry plants, grown in soilless system, could affect plants yield and post-harvest feature of fruits during the storage period, carried out at three different temperatures (i.e., 1, 4 and 10 °C) for 7 and 14 days. Furthermore, we investigated whether the plant nutritional regime, specifically the Si fertilization, can impact the composition of microbial community. Our results showed that biofortification did not significantly affect fruits firmness, whereas, at the highest Si levels, an increase in titratable acidity was observed. The microbial community analysis highlighted for the first time the presence of probiotic bacteria, as Bacillus breve, which could present interesting technological features as strains adapted to the strawberry fruit-sphere. In addition, with the increasing levels of Si biofortification, the depletion of potentially pathogenic microorganisms, like Escherichia coli and Terrisporobacter glycolicus, was also observed. In conclusion, data here reported highlight for the first time the possible role played by the nutritional regimes of strawberry plants in shaping composition of the fruit epiphytic microbial community.
Temporary Immersion System for Production of Biomass and Bioactive Compounds from Medicinal Plants
Authors: De Carlo Anna , Tarraf Waed , Lambardi Maurizio , Benelli Carla
Published: November 2021

The cultivation of medicinal plants and the production of bioactive compounds derived from them are of fundamental importance and interest, not only at the pharmacological level but also in nutraceutical and cosmetic industries and in functional foods, as well as plant protection in agriculture. In order to respond adequately to the increased demands of the global market from a quantitative and qualitative point of view and to guarantee environmental sustainability of the productions, it is necessary to resort to innovation tools, such as tissue culture in vitro technology. Nowadays, it is well known that the cultivation through the Temporary Immersion System (TIS) in a bioreactor has considerable advantages both for the in vitro mass production of the plants and for the production of secondary metabolites. The present review focuses on the application of TIS during the last two decades to produce biomass and bioactive compounds from medicinal plants. Indeed, almost one hundred papers are discussed, and they particularly focus on the effects of the culture system, vessel design and equipment, immersion time and frequency, and substrate composition for 88 medicinal species in TIS bioreactor culture.
Photosynthetic Efficiency in Flag Leaves and Ears of Winter Wheat during Fusarium Head Blight Infection
Authors: Katanić Zorana , Mlinarić Selma , Katanić Nataša , Ćosić Josipa , Španić Valentina
Published: November 2021

Fusarium head blight (FHB) is one of the most serious fungal diseases of wheat (Triticum aestivum L.). It causes major reduction of grain yield and quality, while the safety of wheat products is at risk due to mycotoxin contaminations. To contribute to a better understanding of mechanisms governing more efficient defense strategies against FHB, an evaluation of photosynthetic efficiency was performed during different phases of infection, i.e., before visual symptoms occur, at the onset and after the development of disease symptoms. Six different winter wheat varieties were artificially inoculated with the most significant causal agents of FHB (Fusarium graminearum and F. culmorum) at two different locations. Photosynthetic efficiency was assessed in flag leaves and ears of inoculated and untreated (control) plants based on measurements of chlorophyll a fluorescence rise kinetics and the calculation of JIP-test parameters. Obtained results indicate that the response of wheat to Fusarium infection includes changes in photosynthetic efficiency which can encompass alternating reductions and increases in photosynthetic performance during the course of the infection in both flag leaves and ears. FHB-induced photosynthetic adjustments were shown to be somewhat variety-specific, but location was shown to be a more significant factor in modulating the response of wheat to Fusarium infection. Changes in chlorophyll a fluorescence rise kinetics could be detected prior to visible symptoms of the disease. Therefore, this method could be applied for the early detection of Fusarium infection, particularly the analysis of L-band appearance, which showed a similar response in all inoculated plants, regardless of variety or location.
Adsorption of Fulvic Acid and Water Extractable Soil Organic Matter on Kaolinite and Muscovite
Authors: Kolchanova Ksenia , Tolpeshta Inna , Izosimova Yulia
Published: November 2021

The interaction of organic matter with mineral components of the solid phase of soils is the most important process that regulates the cycle and balance of carbon in the biosphere. The adsorption of humic acids on minerals is accompanied by their fractionation in size, composition, and amphiphilicity, thus decreasing their heterogeneity. Despite a strong interest in studying the regularities and mechanisms of the interaction between natural organic matter and layered aluminosilicates, it is necessary to take into account the natural diversity of soil organic matter, adsorption conditions, and mineral composition. This study was designed to investigate the adsorption regularities of fulvic acid (FA) and water-extractable organic matter (WEOM) isolated from horizon H of peaty-podzolic-gleyic soil on kaolinite and muscovite. Sorbates and sorbents were examined by the following methods: high-pressure size exclusion chromatography (HPSEC), high-performance liquid chromatography (HPLC), and potentiometric titration. The specific surface areas of the sorbents were determined by the sorption of N2 molecules. We found that hydrophobic components of FA and WEOM are mainly adsorbed on mineral surfaces. The adsorption of FA and WEOM on kaolinite and muscovite is followed by decreased hydrophobicity of organic matter and decreased heterogeneity of its amphiphilic properties in an equilibrium solution. At pH levels around 6, sorption of organic matter from FA solution containing 19% and 81% hydrophilic and hydrophobic components, respectively, onto kaolinite and muscovite occurs mainly due to hydrophobic components. Hydrophobic interactions on siloxane surfaces are the main mechanism to fix FA on both minerals. Kaolinite adsorbs slightly more organic carbon per unit area than muscovite. The adsorption of WEOM from a solution with 41% hydrophilic and 59% hydrophobic components results not only from hydrophobic and hydrophilic components but also from hydrophobic and electrostatic interactions and depends on pH. The most hydrophobic fractions of organic matter are adsorbed from the hydrophobic components on the surface of both minerals. Under conditions of the performed experiments at pH < 5, more WEOM is adsorbed on muscovite than on kaolinite.
Potato (Solanum tuberosum L.) Growth in Response to Foliar Silicon Application
Authors: Wadas Wanda
Published: November 2021

As silicon induces abiotic stress tolerance in crop plants, it was hypothesized that foliar silicon application could improve potato growth in an early crop culture. The effect of dosage (0.25 dm3·ha−1 or 0.50 dm3·ha−1) and time (the leaf development stage, BBCH 14–16, tuber initiation stage, BBCH 40–41, or both the leaf development stage and tuber initiation stage) of application of the silicon-based biostimulant Optysil (200 g SiO2 and 24 g Fe in 1 dm3) on potato growth was investigated. Optysil caused an increase in plant height and above-ground plant biomass, enlarged leaf area and decreased leaf weight ratio (LWR), and, as a result, increased tuber number and tuber weight per plant. The effect of Optysil depended on a water deficit during potato growth. The average tuber weight per plant in the cultivation treated with Optysil was higher by 23% under periodic water deficits during potato growth, and by 13% under drought conditions, than in the cultivation without the biostimulant. Dosage of Optysil had a significant effect on above-ground plant biomass and leaf area in the warm and arid growing season. Under drought stress, Optysil at 0.50 dm3·ha−1 stimulated potato growth more than at 0.25 dm3·ha−1. Under periodic water deficits during potato growth, the time of Optysil application affected potato growth more than the biostimulant dosage. The plants produced greater above-ground biomass and had a larger leaf area with two Optysil applications; one in the initial plant growth period (BBCH 14–16), and a repeated treatment in the tuber initiation stage (BBCH 40–41). The tuber weight per plant was positively correlated with the plant height, above-ground plant biomass, leaf area, and LWR.
NLR Genes Related Transcript Sets in Potato Cultivars Bearing Genetic Material of Wild Mexican Solanum Species
Authors: Kochetov Alex V. , Afonnikov Dmitry A. , Shmakov Nikolay , Vasiliev Gennady V. , Antonova Olga Y. , Shatskaya Natalja V. , Glagoleva Anastasiya Y. , Ibragimova Salmaz M. , Khiutti Aleksander , Afanasenko Olga S. , Gavrilenko Tatjana A.
Published: November 2021

The long history of potato breeding includes the numerous introgressions of resistance genes from many wild species of South and Central America as well as from cultivated species into the breeding genepool. Most R genes belong to the NLR family with nucleotide-binding site–leucine-rich repeat. The aim of this research concerns an evaluation of NLR genes expression in transcriptomes of three potato cultivars (Evraziya, Siverskij, Sudarynya), which combine genetic material from wild and cultivated potato species, and each bears intragenic markers of RB/Rpi-blb1/Rpi-sto1 genes conferring broad-range resistance to late blight. The transcriptomes of the cultivars were compared before and 24 h after the Phytophthora infestans inoculation. The induction of RB/Rpi-blb1/Rpi-sto1 transcript after 24 h of inoculation was detected in the resistant cultivars Siverskij and Sudarynya but not in susceptible cv. Evraziya. This demonstrates the importance of transcriptomic assay for understanding the results of marker-assisted selection and phenotyping. Interestingly, assembling the transcriptomes de novo and analysis with NLR-parser tool revealed significant fractions of novel NLR genes with no homology to the reference genome from 103 (cv. Siverskij) to 160 (S. stoloniferum, 30514/15). Comparison of novel NLRs demonstrated a relatively small intersection between the genotypes that coincided with their complex pedigrees with several interspecific hybridization events. These novel NLRs may facilitate the discovery of new efficient R genes.
Characterizing Genotype-Specific Rice Architectural Traits Using Smart Mobile App and Data Modeling
Authors: Yang Yubin , Paleari Livia , Wilson Lloyd T. , Confalonieri Roberto , Astaldi Adriano Z. , Buratti Mirko , Yan Zongbu , Christensen Eric , Wang Jing , Samonte Stanley Omar P. B.
Published: November 2021

The quantity and quality of light captured by a plant’s canopy control many of its growth and development processes. However, light quality-related processes are not very well represented in most traditional and functional–structural crop models, which has been a major barrier to furthering crop model improvement and to better capturing the genetic control and environment modification of plant growth and development. A main challenge is the difficulty in obtaining dynamic data on plant canopy architectural characteristics. Current approaches on the measurement of 3D traits often relies on technologies that are either costly, excessively complicated, or impractical for field use. This study presents a methodology to estimate plant 3D traits using smart mobile app and data modeling. Leaf architecture data on 16 genotypes of rice were collected during two crop seasons using the smart-app PocketPlant3D. Quadratic Bézier curves were fitted to leaf lamina for estimation of insertion angle, elevation angle, and curve height. Leaf azimuth angle distribution, leaf phyllotaxis, canopy leaf angle distribution, and light extinction coefficients were also analyzed. The results could be used for breeding line selection or for parameterizing or evaluating rice 3D architectural models. The methodology opens new opportunities for strengthening the integration of plant 3D architectural traits in crop modeling, better capturing the genetic control and environment modification of plant growth and development, and for improving ideotype-based plant breeding.
Replacing Synthetic Nitrogen Fertilizer with Different Types of Organic Materials Improves Grain Yield in China: A Meta-Analysis
Authors: Fan Xiaoru , Chen Zekai , Niu Zihan , Zeng Ruiyao , Ou Jingmin , Liu Xingxing , Wang Xiaolong
Published: November 2021

Synthetic nitrogen fertilizer substitution (NSS) with different types of organic material is a cleaner agricultural practice for reducing the application of synthetic N input in farmlands while also relieving the environmental issues caused by the discharge of organic wastes. However, the effects of the NSS practice on crop yields, being the primary objective of agricultural activity, is still uncertain in China. This study conducted a meta-analysis to assess the impacts of the NSS practices with different types of organic materials on crop yields. Results showed that the average crop yield was increased by 3.4%, with significant differences under NSS, thereby demonstrating that this practice contributed to improving crop yields, especially of rice and maize. According to published reports, the NSS practices involving chicken manure, pig manure, and crop straw increased crop yields by 4.79, 7.68, and 3.28%, respectively, with significant differences, thus demonstrating the superior effects needed for replacing synthetic N fertilizer. Moreover, substitution ratios (SR) between 0% and 60% could be suggested when using the NSS practice, with the high SR recommended when the original soil fertility was adequate for crops. Considering the long-term effects of applied organic materials, improving the grain yield with the NSS practice should be expected in the long-term. By effectively applying the NSS, this study attempted to scientifically decide on the type of organic materials and the appropriate SR based on the conditions of the soil and the crop. The results provide research information for the development of clean agricultural production and food security in China.
The Effect of Soil Sampling Density and Spatial Autocorrelation on Interpolation Accuracy of Chemical Soil Properties in Arable Cropland
Authors: Radočaj Dorijan , Jug Irena , Vukadinović Vesna , Jurišić Mladen , Gašparović Mateo
Published: November 2021

Knowledge of the relationship between soil sampling density and spatial autocorrelation with interpolation accuracy allows more time- and cost-efficient spatial analysis. Previous studies produced contradictory observations regarding this relationship, and this study aims to determine and explore under which conditions the interpolation accuracy of chemical soil properties is affected. The study area covered 823.4 ha of agricultural land with 160 soil samples containing phosphorus pentoxide (P2O5) and potassium oxide (K2O) values. The original set was split into eight subsets using a geographically stratified random split method, interpolated using the ordinary kriging (OK) and inverse distance weighted (IDW) methods. OK and IDW achieved similar interpolation accuracy regardless of the soil chemical property and sampling density, contrary to the majority of previous studies which observed the superiority of kriging as a deterministic interpolation method. The primary dependence of interpolation accuracy to soil sampling density was observed, having R2 in the range of 56.5–83.4% for the interpolation accuracy assessment. While this study enables farmers to perform efficient soil sampling according to the desired level of detail, it could also prove useful to professions dependent on field sampling, such as biology, geology, and mining.
Co-Application of Allicin and Chitosan Increases Resistance of Rosa roxburghii against Powdery Mildew and Enhances Its Yield and Quality
Authors: Li Jiaohong , Li Rongyu , Zhang Cheng , Guo Zhenxiang , Wu Xiaomao , An Huaming
Published: November 2021

Powdery mildew, caused by Sphaerotheca sp., annually causes severe losses in yield and quality in Rosa roxburghii production areas of southwest China. In this study, the role of the co-application of allicin and chitosan in the resistance of R. roxburghii against powdery mildew and its effects on growth, yield and quality of R. roxburghii were investigated. The laboratory toxicity test results show that allicin exhibited a superior antifungal activity against Sphaerotheca sp. with EC50 value of 148.65 mg kg−1. In the field, the foliar application of allicin could effectively enhance chitosan against powdery mildew with control efficacy of 85.97% by spraying 5% allicin microemulsion (ME) 100–time liquid + chitosan 100–time liquid, which was significantly (p < 0.01) higher than 76.70% of allicin, 70.93% of chitosan and 60.23% of polyoxin. The co-application of allicin and chitosan effectively enhanced the photosynthetic rate and chlorophyll of R. roxburghii compared with allicin, chitosan or polyoxin alone. Moreover, allicin used together with chitosan was more effective than allicin or chitosan alone in enhancing R. roxburghii plant growth and fruit yield as well as improving R. roxburghii fruit quality. This work highlights that the co-application of allicin and chitosan can be used as a green, cost-effective and environmentally friendly alternative strategy to conventional antibiotics for controlling powdery mildew of R. roxburghii.
Targeting Mycobacterial F-ATP Synthase C-Terminal α Subunit Interaction Motif on Rotary Subunit γ
Authors: Harikishore Amaravadhi , Wong Chui-Fann , Ragunathan Priya , Litty Dennis , Müller Volker , Grüber Gerhard
Published: November 2021

Mycobacteria regulate their energy (ATP) levels to sustain their survival even in stringent living conditions. Recent studies have shown that mycobacteria not only slow down their respiratory rate but also block ATP hydrolysis of the F-ATP synthase (α3:β3:γ:δ:ε:a:b:b’:c9) to maintain ATP homeostasis in situations not amenable for growth. The mycobacteria-specific α C-terminus (α533-545) has unraveled to be the major regulative of latent ATP hydrolysis. Its deletion stimulates ATPase activity while reducing ATP synthesis. In one of the six rotational states of F-ATP synthase, α533-545 has been visualized to dock deep into subunit γ, thereby blocking rotation of γ within the engine. The functional role(s) of this C-terminus in the other rotational states are not clarified yet and are being still pursued in structural studies. Based on the interaction pattern of the docked α533-545 region with subunit γ, we attempted to study the druggability of the α533-545 motif. In this direction, our computational work has led to the development of an eight-featured α533-545 peptide pharmacophore, followed by database screening, molecular docking, and pose selection, resulting in eleven hit molecules. ATP synthesis inhibition assays using recombinant ATP synthase as well as mycobacterial inverted membrane vesicles show that one of the hits, AlMF1, inhibited the mycobacterial F-ATP synthase in a micromolar range. The successful targeting of the α533-545-γ interaction motif demonstrates the potential to develop inhibitors targeting the α site to interrupt rotary coupling with ATP synthesis.
Performance Evaluation of Diagnostic Assays for Detection and Classification of Carbapenemase-Producing Organisms
Authors: Zhang Anru , Wang Xiaojuan , Liang Xinyue , Zhou Chaoe , Wang Qi , Zhang Jiangang , Wang Hui
Published: November 2021

Rapid and accurate detection can help optimize patient treatment and improve infection control against nosocomial carbapenemase-producing organisms (CPO). In this study, a total of 217 routine clinical isolates (Enterobacterales and A. baumannii), including 178 CPOs and 39 non-CPOs, were tested to evaluate the performance of six phenotypic carbapenemase detection and classification assays, i.e., BD Phoenix CPO detect panel, Rapidec Carba-NP, O.K.N detection kit, and three carbapenem inactivation methods (CIMs; mCIM, eCIM, sCIM). The overall detection sensitivity and specificity were 98.78% (95.21–99.79%) and 79.49% (63.06–90.13%), respectively, for the BD phoenix CPO P/N test; 91.93% (86.30–95.45%) and 100% (88.83–100%), respectively, for the Rapidec Carba-NP; 98.06% (94.00–99.50%) and 97.44% (84.92–99.87%), respectively, for mCIM; and 96.89% (92.52–98.85%) and 94.87% (81.37–99.11%), respectively, for sCIM. The classification sensitivity and specificity for the BD phoenix CPO Ambler test, the O.K.N detection kit, and the mCIM and eCIM were 56.71% (48.75–64.34%) and 94.87% (81.37–99.11%), 99.28% (95.43–99.96%) and 100% (88.83–100%), and 92.90% (87.35–96.23%) and 97.44% (84.92–99.87%), respectively. All detection assays were reliable in detecting carbapenemase. However, the Rapidec Carba-NP and mCIM were insufficient in detecting OXA-48-like enzymes. The BD phoenix CPO detect panel had a strong ability to detect carbapenemase but failed to classify 48/59 (81.36%) KPC, 8/52 (15.38%) NDM, 8/22 (36.36%) OXA-23-like, and 6/11 (54.55%) dual enzymes. The O.K.N detection kit accurately detected and differentiated KPC, NDM, and OXA-48-like enzymes existing alone or in combination. The results of this study will support reliable laboratory work tools and promote therapeutic and infection control decisions.
Multidrug Resistant Coagulase-Positive Staphylococcus aureus and Their Enterotoxins Detection in Traditional Cheeses Marketed in Banat Region, Romania
Authors: Morar Adriana , Ban-Cucerzan Alexandra , Herman Viorel , Tîrziu Emil , Sallam Khalid Ibrahim , Abd-Elghany Samir Mohammed , Imre Kálmán
Published: November 2021

The main objectives of the present study were to determine the occurrence of coagulase positive staphylococci (CPS) and to assess the presence and antimicrobial susceptibility profile of Staphylococcus aureus isolates in different raw milk origin (cow and sheep) traditional cheeses marketed in Banat region, Romania. Additionally, the presence of mecA gene in S. aureus isolates and the staphylococcal enterotoxins (SEs) in cheese samples were evaluated. A total of 81.6% (138/169) of the screened samples were positive for CPS. Furthermore, 35.5% (49/138) of the investigated CPS positive cheese samples were contaminated with S. aureus, with an isolation frequency of 46.6% (14/30) in caș, 33.3% (32/96) in telemea, 25% (2/8) in burduf, and 25% (1/4) in urdă assortments, respectively. From the total number of S. aureus isolates, 6.1% (3/49) harbored the mecA gene. Detectable levels of SEs were identified in 4.3% (4/94) of cheese samples with a CPS contamination level higher than 105 log CFU g−1. The expressed antimicrobial susceptibility profile of the tested cheese-origin S. aureus isolates, with the automated Vitek 2 equipment, showed resistance towards amikacin (90.1%, 10 out from 11 tested), enrofloxacin (86.2%, 25/29), ceftiofur (72.7%, 8/11), neomycin (63.6%, 7/11), benzylpenicillin (53.1%, 26/49), kanamycin (41.4%, 12/29), rifampicin (39.5%, 15/38), tetracycline (38.8%, 19/49), tilmicosin (36.4%, 4/11), clindamycin (30.6%, 15/49), ciprofloxacin (30%, 6/20), erythromycin (22.4%, 11/49), tylosin (18.2%, 2/11), oxacillin (16.3%, 8/49), linezolid (15%, 3/20), teicoplanin (15%, 3/20), fusidic acid (13.1%), imipenem (10.5%, 4/38), vancomycin (7.9%, 3/38), ampicillin (5.5%, 1/18), mupirocin (5.5%, 1/18), fosfomycin (5%, 1/20), and gentamicin (4.1%, 2/49). Twenty-four (49%) S. aureus isolates exhibited multidrug resistance. The investigation highlighted a common occurrence of multidrug-resistant S. aureus strains in the monitored cheese assortments, which can constitute a potential risk for consumers’ health.
Antibiotic Use and Misuse in Dentistry in India—A Systematic Review
Authors: Bhuvaraghan Aarthi , King Rebecca , Larvin Harriet , Aggarwal Vishal R.
Published: November 2021

Background: Infections caused by antibiotic resistance pose a serious global health threat, undermining our ability to treat common infections and deliver complex medical procedures. Antibiotic misuse, particularly in low-–middle-income countries, is accelerating this problem. Aim: The aim of this systematic review was to investigate the use and misuse of antibiotics in dentistry in India. Method: We included studies carried out on Indian populations evaluating the prescription of prophylactic or therapeutic antibiotics by dental practitioners or other healthcare providers, along with antibiotic self-medication by the general population. The primary outcome measure was prescription rate/use of antibiotics for dental/oral problems. The secondary outcome measures included indications for antibiotic use in dentistry, their types and regimens, factors influencing practitioners’ prescription patterns and any differences based on prescriber and patient characteristics. Multiple databases were searched with no restrictions on language or publication date. The quality assessment of all included studies was carried out using the AXIS tool for cross-sectional studies and the Joanna Briggs Institute checklist for qualitative studies. Results: Of the 1377 studies identified, 50 were eligible for review, comprising 35 questionnaire surveys, 14 prescription audits and one qualitative study (semi-structured interviews). The overall quality of the included studies was found to be low to moderate. The proportion of antibiotic prescriptions amongst all prescriptions made was found to range from 27% to 88%, with most studies reporting antibiotics in over half of all prescriptions; studies also reported a high proportion of prescriptions with a fixed dose drug combination. Worryingly, combination doses not recommended by the WHO AWaRe classification were being used. The rate of antibiotic self-medication reported for dental problems varied from 5% to 35%. Conclusions: Our review identified the significant misuse of antibiotics for dental diseases, with inappropriate use therapeutically and prophylactically, the use of broad spectrum and combination antibiotics not recommended by WHO, and self-medication by the general population. There is an urgent need for targeted stewardship programmes in this arena.
Inhibition of Quorum Sensing and Virulence Factors of Pseudomonas aeruginosa by Biologically Synthesized Gold and Selenium Nanoparticles
Authors: Elshaer Soha Lotfy , Shaaban Mona I.
Published: November 2021

The development of microbial resistance requires a novel approach to control microbial infection. This study implies the microbial synthesis of nanometals and assessment of their antivirulent activity against Pseudomonas aeruginosa. Streptomyces isolate S91 was isolated from soil with substantial ability for growth at high salts concentrations. The cell-free supernatant of S91was utilized for the synthesis of Au-NPs and Se-NPs. The 16S rRNA sequence analysis of Streptomyces S91 revealed that S91 had a high similarity (98.82%) to Streptomyces olivaceous. The biosynthesized Au-NPs and Se-NPs were characterized using a UV-Vis spectrophotometer, dynamic light scattering, transmission electron microscopy, energy dispersive X-ray diffraction and Fourier-transform infrared spectroscopy. The quorum sensing inhibitory (QSI) potential of Au-NPs and Se-NPs and the antivirulence activity was examined against P. aeruginosa. The QSI potential was confirmed using RT-PCR. The synthesized Au-NPs and Se-NPs were monodispersed spherical shapes with particle size of 12.2 and 67.98 nm, respectively. Au-NPs and Se-NPs eliminated QS in P. aeruginosa at a concentration range of 2.3–18.5 µg/mL for Au-NPs and 2.3–592 µg/mL for Se-NPs. In addition, Au-NPs and Se-NPs significantly inhibited QS-related virulence factors, such as pyocyanin, protease and, elastase in P. aeruginosa. At the molecular level, Au-NPs and Se-NPs significantly suppressed the relative expression of QS genes and toxins. Hence, the biosynthesized Au-NPS and Se-NPS could be substantial inhibitors of QS and virulence traits of P. aeruginosa.
Supplemental Oxygen in the Newborn: Historical Perspective and Current Trends
Authors: Mathias Maxwell , Chang Jill , Perez Marta , Saugstad Ola
Published: November 2021

Oxygen is the final electron acceptor in aerobic respiration, and a lack of oxygen can result in bioenergetic failure and cell death. Thus, administration of supplemental concentrations of oxygen to overcome barriers to tissue oxygen delivery (e.g., heart failure, lung disease, ischemia), can rescue dying cells where cellular oxygen content is low. However, the balance of oxygen delivery and oxygen consumption relies on tightly controlled oxygen gradients and compartmentalized redox potential. While therapeutic oxygen delivery can be life-saving, it can disrupt growth and development, impair bioenergetic function, and induce inflammation. Newborns, and premature newborns especially, have features that confer particular susceptibility to hyperoxic injury due to oxidative stress. In this review, we will describe the unique features of newborn redox physiology and antioxidant defenses, the history of therapeutic oxygen use in this population and its role in disease, and clinical trends in the use of therapeutic oxygen and mitigation of neonatal oxidative injury.
Impulse Noise Induced Hidden Hearing Loss, Hair Cell Ciliary Changes and Oxidative Stress in Mice
Authors: Gratias Paul , Nasr Jamal , Affortit Corentin , Ceccato Jean-Charles , François Florence , Casas François , Pujol Rémy , Pucheu Sylvie , Puel Jean-Luc , Wang Jing
Published: November 2021

Recent studies demonstrated that reversible continuous noise exposure may induce a temporary threshold shift (TTS) with a permanent degeneration of auditory nerve fibers, although hair cells remain intact. To probe the impact of TTS-inducing impulse noise exposure on hearing, CBA/J Mice were exposed to noise impulses with peak pressures of 145 dB SPL. We found that 30 min after exposure, the noise caused a mean elevation of ABR thresholds of ~30 dB and a reduction in DPOAE amplitude. Four weeks later, ABR thresholds and DPOAE amplitude were back to normal in the higher frequency region (8–32 kHz). At lower frequencies, a small degree of PTS remained. Morphological evaluations revealed a disturbance of the stereociliary bundle of outer hair cells, mainly located in the apical regions. On the other hand, the reduced suprathreshold ABR amplitudes remained until 4 weeks later. A loss of synapse numbers was observed 24 h after exposure, with full recovery two weeks later. Transmission electron microscopy revealed morphological changes at the ribbon synapses by two weeks post exposure. In addition, increased levels of oxidative stress were observed immediately after exposure, and maintained for a further 2 weeks. These results clarify the pathology underlying impulse noise-induced sensory dysfunction, and suggest possible links between impulse-noise injury, cochlear cell morphology, metabolic changes, and hidden hearing loss.
Anemopsis californica Attenuates Photoaging by Regulating MAPK, NRF2, and NFATc1 Signaling Pathways
Authors: Nguyen Quynh T. N. , Fang Minzhe , Do Nhung Quynh , Jeong Jeehaeng , Oh Sarang , Zheng Shengdao , Kim Minseon , Choi Junhui , Lim Seojun , Yi Tae Hoo
Published: November 2021

Long-term exposure of the skin to solar radiation causes chronic inflammation and oxidative stress, which accelerates collagen degradation. This contributes to the formation of wrinkles and dark spots, skin fragility, and even skin cancer. In this study, Anemopsis californica (AC), a herb from North America that is well known for treating microorganism infection and promoting wound healing, was investigated for its photoprotective effects. The biological effects of AC were studied on two in vitro models, namely, lipopolysaccharide (LPS)-induced macrophages and ultraviolet B (UVB)-irradiated dermal fibroblasts, to characterize its underlying molecular mechanisms. The results showed that AC decreased the mRNA levels of inflammatory mediators in sensitized macrophages, including cytokines, inducible nitric oxide synthase (iNOS), and cyclooxygenase (COX-2). Moreover, AC alleviated UVB-induced photoaging in dermal fibroblasts by restoring procollagen synthesis. This resulted from the regulation of excessive reactive oxygen species (ROS) by AC, which was mediated by the activation of the antioxidative system nuclear factor erythroid 2-related factor 2 (NRF2). AC also alleviated oxidative stress and inflammatory responses by inhibiting the phosphorylation of mitogen-activated protein kinase (MAPK) and interfering with the nuclear translocation of the immune regulator nuclear factor of activated T-cells 1 (NFATc1). In conclusion, the protective effects of AC on skin cellular components suggested that it has the potential for use in the development of drugs and cosmetics that protect the skin from UVB-induced chronic inflammation and aging.
Pardaxin Activates Excessive Mitophagy and Mitochondria-Mediated Apoptosis in Human Ovarian Cancer by Inducing Reactive Oxygen Species
Authors: Chen Yen-Po , Shih Po-Chang , Feng Chien-Wei , Wu Chang-Cheng , Tsui Kuan-Hao , Lin You-Hsien , Kuo Hsiao-Mei , Wen Zhi-Hong
Published: November 2021

Most ovarian cancer (OC) patients are diagnosed with stage III or higher disease, resulting in a poor prognosis. Currently, paclitaxel combined with carboplatin shows the best treatment outcome for OC. However, no effective drug is available for patients that do not respond to treatment; thus, new drugs for OC are needed. We evaluated the antimicrobial peptide, pardaxin, in PA-1 and SKOV3 cells. Pardaxin induced apoptosis as determined by MTT and TUNEL assays, as well as activation of caspases-9/3, Bid, t-Bid, and Bax, whereas Bcl-2 was downregulated. The IC50 values for pardaxin were 4.6–3.0 μM at 24 and 48 h. Mitochondrial and intracellular reactive oxygen species (ROS) were overproduced and associated with disrupted mitochondrial membrane potential and respiratory capacity. Additionally, the mitochondrial network was fragmented with downregulated fusogenic proteins, MFN1/2 and L-/S-OPA1, and upregulated fission-related proteins, DRP1 and FIS1. Autophagy was also activated as evidenced by increased expression of autophagosome formation-related proteins, Beclin, p62, and LC3. Enhanced mitochondrial fragmentation and autophagy indicate that mitophagy was activated. ROS-induced cytotoxicity was reversed by the addition of N-acetylcysteine, confirming ROS overproduction as a contributor. Taken together, pardaxin demonstrated promising anticancer activity in OC cells, which warrants further preclinical development of this compound.
Oxidative Stress in the Brain: Basic Concepts and Treatment Strategies in Stroke
Authors: Jelinek Matyas , Jurajda Michal , Duris Kamil
Published: November 2021

The production of free radicals is inevitably associated with metabolism and other enzymatic processes. Under physiological conditions, however, free radicals are effectively eliminated by numerous antioxidant mechanisms. Oxidative stress occurs due to an imbalance between the production and elimination of free radicals under pathological conditions. Oxidative stress is also associated with ageing. The brain is prone to oxidative damage because of its high metabolic activity and high vulnerability to ischemic damage. Oxidative stress, thus, plays a major role in the pathophysiology of both acute and chronic pathologies in the brain, such as stroke, traumatic brain injury or neurodegenerative diseases. The goal of this article is to summarize the basic concepts of oxidative stress and its significance in brain pathologies, as well as to discuss treatment strategies for dealing with oxidative stress in stroke.
Regioselective and Stereoselective Epoxidation of n-3 and n-6 Fatty Acids by Fungal Peroxygenases
Authors: González-Benjumea Alejandro , Linde Dolores , Carro Juan , Ullrich René , Hofrichter Martin , Martínez Angel T. , Gutiérrez Ana
Published: November 2021

Epoxide metabolites from n-3 and n-6 polyunsaturated fatty acids arouse interest thanks to their physiological and pharmacological activities. Their chemical synthesis has significant drawbacks, and enzymes emerge as an alternative with potentially higher selectivity and greener nature. Conversion of eleven eicosanoid, docosanoid, and other n-3/n-6 fatty acids into mono-epoxides by fungal unspecific peroxygenases (UPOs) is investigated, with emphasis on the Agrocybe aegerita (AaeUPO) and Collariella virescens (rCviUPO) enzymes. GC-MS revealed the strict regioselectivity of the n-3 and n-6 reactions with AaeUPO and rCviUPO, respectively, yielding 91%-quantitative conversion into mono-epoxides at the last double bond. Then, six of these mono-epoxides were obtained at mg-scale, purified and further structurally characterized by 1H, 13C and HMBC NMR. Moreover, chiral HPLC showed that the n-3 epoxides were also formed (by AaeUPO) with total S/R enantioselectivity (ee > 99%) while the n-6 epoxides (from rCviUPO reactions) were formed in nearly racemic mixtures. The high regio- and enantioselectivity of several of these reactions unveils the synthetic utility of fungal peroxygenases in fatty acid epoxidation.
Cholesterol Dysmetabolism in Alzheimer’s Disease: A Starring Role for Astrocytes?
Authors: Staurenghi Erica , Giannelli Serena , Testa Gabriella , Sottero Barbara , Leonarduzzi Gabriella , Gamba Paola
Published: November 2021

In recent decades, the impairment of cholesterol metabolism in the pathogenesis of Alzheimer’s disease (AD) has been intensively investigated, and it has been recognized to affect amyloid β (Aβ) production and clearance, tau phosphorylation, neuroinflammation and degeneration. In particular, the key role of cholesterol oxidation products, named oxysterols, has emerged. Brain cholesterol metabolism is independent from that of peripheral tissues and it must be preserved in order to guarantee cerebral functions. Among the cells that help maintain brain cholesterol homeostasis, astrocytes play a starring role since they deliver de novo synthesized cholesterol to neurons. In addition, other physiological roles of astrocytes are to modulate synaptic transmission and plasticity and support neurons providing energy. In the AD brain, astrocytes undergo significant morphological and functional changes that contribute to AD onset and development. However, the extent of this contribution and the role played by oxysterols are still unclear. Here we review the current understanding of the physiological role exerted by astrocytes in the brain and their contribution to AD pathogenesis. In particular, we focus on the impact of cholesterol dysmetabolism on astrocyte functions suggesting new potential approaches to develop therapeutic strategies aimed at counteracting AD development.