Distribution of Xanthomonas oryzae pv. oryzae Pathotypes in Basmati-Rice-Growing Areas of Jammu and Kashmir, India
Authors: Amin Tabasia , Gupta Vishal , Sharma Akash , Rai Pardeep Kumar , Razdan Vijay Kumar , Sharma Satish Kumar , Singh Santosh Kumar , Lone Javeed Ahmad , Yaqoob Munazah , Singh Brajeshwar , Gupta Sushil Kumar 
Published: February 2023

Rice is an important staple food for more than half of the world’s population. Though the genetic potential of commonly cultivated varieties of rice is diminished due to various biotic and abiotic constraints, bacterial leaf blight (BLB) of rice caused by Xanthomonas oryzae pv. oryzae (Xoo) is considered one of its most destructive diseases in India. Based on morpho-cultural characteristics, bacterial pathogens isolated from the leaves of a rice plant showing typical BLB symptoms were identified as Xanthomonas oryzae pv. oryzae. Morphological studies revealed that the pathogen is Gram-negative, a short rod, with rounded ends, single or in pairs, light yellow, circular, whitish yellow to straw-colored, convex, yellow, slightly raised, motile with a single polar flagellum, capsulate and non-spore-forming. Biochemical tests, viz., the Gram reaction, KOH test and catalyst test, showed a positive reaction for all the isolates. Twenty isolates of Xoo were collected from the basmati-growing areas of the Jammu, Samba and Kathua districts in the Jammu sub-tropics during 2019, and their pathogenicity was confirmed on five susceptible rice cultivars, viz., Basmati-370, Pusa-1121, TN-1, SJR and Jaya, by the leaf-clipping method, and subsequently, Koch’s postulate was established in each case. Seven Xoo pathotypes, viz., Pathotype 1, Pathotype 2, Pathotype 3, Pathotype 4, Pathotype 5, Pathotype 6 and Pathotype 7, were identified from the total sample of 20 isolates. Pathotype 2 was the most dominant (100%), followed by Pathotype 5 (44.44%), Pathotype 4 (40%), Pathotype 6 (40%), Pathotype 7 (33.33%), Pathotype 3 (22.22%) and Pathotype 1 (20%), in the Jammu sub-tropics. In Jammu district, Pathotype 5 was highly distributed (44.44%) followed by Pathotype 7 (33.33%) and Pathotype 3 (22.22%). Pathotype 4 and Pathotype 6 each showed a 40 percent distribution in Kathua district, followed by Pathotype 1 (20%). Only one pathotype, i.e., Pathotype 2, was recorded in Samba district with a 100 percent distribution. Five genes, viz., Xa13, Xa4, Xa13 and Xa5 + Xa13, showed complete resistance, whereas Xa4, Xa5, Xa7, Xa8, Xa21, Xa4 + Xa5 and Xa4 + Xa21 showed susceptible response against the test isolates. It was observed that most of the single BLB-resistant genes were moderately to highly susceptible to almost all the Xoo isolates, whereas combinations of BLB resistance genes possessed high resistance against all the Xoo isolates. The studies revealed that diverse pathogenic variations existed in the Xoo population in the basmati-growing region of Jammu and Kashmir. Based on the response exhibited by Xoo isolates on differential lines, seven pathotypes (Pathotype 1–7) were identified, and their virulence spectrum on rice differentials showed the occurrence of 5, 3, 10, 10, 20, 10 and 15 percent, respectively, in the Jammu sub-tropics. To develop durable and sustainable resistant cultivars, it is essential to identify predominate race(s) in a specific geographical area and continuously monitor the virulence pattern there.