bluuebunny/crossref_metadata_2025 huggingface dataset:
Supplementary Figures from E2F1 and E2F2-Mediated Repression of CPT2 Establishes a Lipid-Rich Tumor-Promoting Environment
Authors: González-Romero Francisco , Mestre Daniela , Aurrekoetxea Igor , O'Rourke Colm J. , Andersen Jesper B. , Woodhoo Ashwin , Tamayo-Caro Miguel , Varela-Rey Marta , Palomo-Irigoyen Marta , Gómez-Santos Beatriz , de Urturi Diego Sáenz , Núñez-García Maitane , García-Rodríguez Juan L. , Fernández-Ares Larraitz , Buqué Xabier , Iglesias-Ara Ainhoa , Bernales Irantzu , De Juan Virginia Gutierrez , Delgado Teresa C. , Goikoetxea-Usandizaga Naroa , Lee Richard , Bhanot Sanjay , Delgado Igotz , Perugorria Maria J. , Errazti Gaizka , Mosteiro Lorena , Gaztambide Sonia , Martinez de la Piscina Idoia , Iruzubieta Paula , Crespo Javier , Banales Jesus M. , Martínez-Chantar Maria L. , Castaño Luis , Zubiaga Ana M. , Aspichueta Patricia
Published: April 2023

Supplementary Figures
Supplementary Figure 7 from YAP and β-Catenin Cooperate to Drive Oncogenesis in Basal Breast Cancer
Authors: Quinn Hazel M. , Vogel Regina , Popp Oliver , Mertins Philipp , Lan Linxiang , Messerschmidt Clemens , Landshammer Alexandro , Lisek Kamil , Château-Joubert Sophie , Marangoni Elisabetta , Koren Elle , Fuchs Yaron , Birchmeier Walter
Published: April 2023

Supplementary figure related to figure 7. Supplementary Fig. 7. YAP is active in human basal-like breast tumours and predicts patient outcome in a subtype-dependent manner.
Supplementary Figure 4 from YAP and β-Catenin Cooperate to Drive Oncogenesis in Basal Breast Cancer
Authors: Quinn Hazel M. , Vogel Regina , Popp Oliver , Mertins Philipp , Lan Linxiang , Messerschmidt Clemens , Landshammer Alexandro , Lisek Kamil , Château-Joubert Sophie , Marangoni Elisabetta , Koren Elle , Fuchs Yaron , Birchmeier Walter
Published: April 2023

Supplementary figure related to figure 4. Supplementary Fig. 4. YAP is activated in CSCs of Wnt-Met-driven mammary gland tumours.
Supplementary Figure 1 from YAP and β-Catenin Cooperate to Drive Oncogenesis in Basal Breast Cancer
Authors: Quinn Hazel M. , Vogel Regina , Popp Oliver , Mertins Philipp , Lan Linxiang , Messerschmidt Clemens , Landshammer Alexandro , Lisek Kamil , Château-Joubert Sophie , Marangoni Elisabetta , Koren Elle , Fuchs Yaron , Birchmeier Walter
Published: April 2023

Supplementary figure related to figure 1. Supplementary Fig. 1. Met signalling regulates YAP and β-catenin.
Source File 1 from YAP and β-Catenin Cooperate to Drive Oncogenesis in Basal Breast Cancer
Authors: Quinn Hazel M. , Vogel Regina , Popp Oliver , Mertins Philipp , Lan Linxiang , Messerschmidt Clemens , Landshammer Alexandro , Lisek Kamil , Château-Joubert Sophie , Marangoni Elisabetta , Koren Elle , Fuchs Yaron , Birchmeier Walter
Published: April 2023

Source file related to figure 6
Supplementary Data from Phosphorylation of SHP2 at Tyr62 Enables Acquired Resistance to SHP2 Allosteric Inhibitors in FLT3-ITD–Driven AML
Authors: Pfeiffer Anamarija , Franciosa Giulia , Locard-Paulet Marie , Piga Ilaria , Reckzeh Kristian , Vemulapalli Vidyasiri , Blacklow Stephen C. , Theilgaard-Mönch Kim , Jensen Lars J. , Olsen Jesper V.
Published: April 2023

Supplementary Data from Phosphorylation of SHP2 at Tyr62 Enables Acquired Resistance to SHP2 Allosteric Inhibitors in FLT3-ITD–Driven AML
Supplementary Data and Methods from Fat Induces Glucose Metabolism in Nontransformed Liver Cells and Promotes Liver Tumorigenesis
Authors: Broadfield Lindsay A. , Duarte João André Gonçalves , Schmieder Roberta , Broekaert Dorien , Veys Koen , Planque Mélanie , Vriens Kim , Karasawa Yasuaki , Napolitano Francesco , Fujita Suguru , Fujii Masashi , Eto Miki , Holvoet Bryan , Vangoitsenhoven Roman , Fernandez-Garcia Juan , Van Elsen Joke , Dehairs Jonas , Zeng Jia , Dooley James , Rubio Rebeca Alba , van Pelt Jos , Grünewald Thomas G.P. , Liston Adrian , Mathieu Chantal , Deroose Christophe M. , Swinnen Johannes V. , Lambrechts Diether , di Bernardo Diego , Kuroda Shinya , De Bock Katrien , Fendt Sarah-Maria
Published: April 2023

This document contains supplemental figures 1-7 and detailed supplemental methods
Supplementary Data from Patterns of Carbon-Bound Exogenous Compounds in Patients with Lung Cancer and Association with Disease Pathophysiology
Authors: Kunzke Thomas , Prade Verena M. , Buck Achim , Sun Na , Feuchtinger Annette , Matzka Marco , Fernandez Isis E. , Wuyts Wim , Ackermann Maximilian , Jonigk Danny , Aichler Michaela , Schmid Ralph A. , Eickelberg Oliver , Berezowska Sabina , Walch Axel
Published: April 2023

Supplementary Data
Supplementary Table S4 from Supraphysiologic Testosterone Induces Ferroptosis and Activates Immune Pathways through Nucleophagy in Prostate Cancer
Authors: Kumar Rajendra , Mendonca Janet , Owoyemi Olutosin , Boyapati Kavya , Thomas Naiju , Kanacharoen Suthicha , Coffey Max , Topiwala Deven , Gomes Carolina , Ozbek Busra , Jones Tracy , Rosen Marc , Dong Liang , Wiens Sadie , Brennen W. Nathaniel , Isaacs John T. , De Marzo Angelo M. , Markowski Mark C. , Antonarakis Emmanuel S. , Qian David Z. , Pienta Kenneth J. , Pardoll Drew M. , Carducci Michael A. , Denmeade Samuel R. , Kachhap Sushant K.
Published: April 2023

Bioplex assay for measurement of chemokines
Supplementary Data from N6-Methyladenosine Regulates mRNA Stability and Translation Efficiency of KRT7 to Promote Breast Cancer Lung Metastasis
Authors: Chen Feng , Chen Zhuojia , Guan Tao , Zhou Yan , Ge Lichen , Zhang Haisheng , Wu Yingmin , Jiang Guan-Min , He Weiling , Li Jiexin , Wang Hongsheng
Published: April 2023

Supplementary Data
Movie S4 from Cytoplasmic Localization of Prostate-Specific Membrane Antigen Inhibitors May Confer Advantages for Targeted Cancer Therapies
Authors: Matthias Jessica , Engelhardt Johann , Schäfer Martin , Bauder-Wüst Ulrike , Meyer Philipp T. , Haberkorn Uwe , Eder Matthias , Kopka Klaus , Hell Stefan W. , Eder Ann-Christin
Published: April 2023

LNCaP Glu-urea-Lys-HBED-STAR 635P holographic
Table S2 from A Dual PI3K/HDAC Inhibitor Induces Immunogenic Ferroptosis to Potentiate Cancer Immune Checkpoint Therapy
Authors: Fan Fushun , Liu Pei , Bao Rudi , Chen Jian , Zhou Minhua , Mo Zhenxian , Ma Yaru , Liu Haiqi , Zhou Yiping , Cai Xiong , Qian Changgeng , Liu Xinjian
Published: April 2023

Antibodies used in the study.
Figure S6 from A Dual PI3K/HDAC Inhibitor Induces Immunogenic Ferroptosis to Potentiate Cancer Immune Checkpoint Therapy
Authors: Fan Fushun , Liu Pei , Bao Rudi , Chen Jian , Zhou Minhua , Mo Zhenxian , Ma Yaru , Liu Haiqi , Zhou Yiping , Cai Xiong , Qian Changgeng , Liu Xinjian
Published: April 2023

Tumor infiltrating lymphocytes in BEBT-908 treated tumors, and individual tumor growth of BEBT-908 and anti-PD1 antibody combination therapy.
Figure S7 from Fc-Optimized Anti-CCR8 Antibody Depletes Regulatory T Cells in Human Tumor Models
Authors: Campbell Joseph R. , McDonald Bryan R. , Mesko Paul B. , Siemers Nathan O. , Singh Priti B. , Selby Mark , Sproul Tim W. , Korman Alan J. , Vlach Logan M. , Houser Jeff , Sambanthamoorthy Sharmila , Lu Kai , Hatcher Sandra V. , Lohre Jack , Jain Renu , Lan Ruth Y.
Published: April 2023

Figure S7 shows 4T1 mouse tumor reductions resulting from anti-mCCR8 or anti-mCCR8/anti-mPD1 treatments
Figure S6 from Fc-Optimized Anti-CCR8 Antibody Depletes Regulatory T Cells in Human Tumor Models
Authors: Campbell Joseph R. , McDonald Bryan R. , Mesko Paul B. , Siemers Nathan O. , Singh Priti B. , Selby Mark , Sproul Tim W. , Korman Alan J. , Vlach Logan M. , Houser Jeff , Sambanthamoorthy Sharmila , Lu Kai , Hatcher Sandra V. , Lohre Jack , Jain Renu , Lan Ruth Y.
Published: April 2023

Figure S6 shows lower FC receptor transcription in normal skin versus tumor tissues
Figure S2 from A Dual PI3K/HDAC Inhibitor Induces Immunogenic Ferroptosis to Potentiate Cancer Immune Checkpoint Therapy
Authors: Fan Fushun , Liu Pei , Bao Rudi , Chen Jian , Zhou Minhua , Mo Zhenxian , Ma Yaru , Liu Haiqi , Zhou Yiping , Cai Xiong , Qian Changgeng , Liu Xinjian
Published: April 2023

Off-target kinase and on-target kinase activities of BEBT-908.
Figure S1 from Fc-Optimized Anti-CCR8 Antibody Depletes Regulatory T Cells in Human Tumor Models
Authors: Campbell Joseph R. , McDonald Bryan R. , Mesko Paul B. , Siemers Nathan O. , Singh Priti B. , Selby Mark , Sproul Tim W. , Korman Alan J. , Vlach Logan M. , Houser Jeff , Sambanthamoorthy Sharmila , Lu Kai , Hatcher Sandra V. , Lohre Jack , Jain Renu , Lan Ruth Y.
Published: April 2023

Figure S1 shows that FOXP3+ cells lacking CCR8 are composed of effector T cells and less activated Tregs
Figure S6 from Targeting the IRE1α/XBP1 Endoplasmic Reticulum Stress Response Pathway in ARID1A-Mutant Ovarian Cancers
Authors: Zundell Joseph A. , Fukumoto Takeshi , Lin Jianhuang , Fatkhudinov Nail , Nacarelli Timothy , Kossenkov Andrew V. , Liu Qin , Cassel Joel , Hu Chih-Chi Andrew , Wu Shuai , Zhang Rugang
Published: April 2023

Figure S6 shows that B-I09 and ACY1215 combination is well tolerated.
Figure S2 from Targeting the IRE1α/XBP1 Endoplasmic Reticulum Stress Response Pathway in ARID1A-Mutant Ovarian Cancers
Authors: Zundell Joseph A. , Fukumoto Takeshi , Lin Jianhuang , Fatkhudinov Nail , Nacarelli Timothy , Kossenkov Andrew V. , Liu Qin , Cassel Joel , Hu Chih-Chi Andrew , Wu Shuai , Zhang Rugang
Published: April 2023

Figure S2 shows that XBP1 and ERN1 are direct ARID1A target genes.
Supplementary Table S4 from A Combinatorial CRISPR–Cas9 Screen Identifies Ifenprodil as an Adjunct to Sorafenib for Liver Cancer Treatment
Authors: Xu Feng , Tong Man , Tong Cindy S.W. , Chan Becky K.C. , Chu Hoi Yee , Wong Tin Lok , Fong John H.C. , Cheung Maggie S.H. , Mak Kylie Hin-Man , Pardeshi Lakhansing , Huang Yuanhua , Wong Koon Ho , Choi Gigi C.G. , Ma Stephanie , Wong Alan S.L.
Published: April 2023

Supplementary Table S4
Table S6 from Exogenous and Endogenous Sources of Serine Contribute to Colon Cancer Metabolism, Growth, and Resistance to 5-Fluorouracil
Authors: Montrose David C. , Saha Suchandrima , Foronda Miguel , McNally Erin M. , Chen Justin , Zhou Xi Kathy , Ha Taehoon , Krumsiek Jan , Buyukozkan Mustafa , Verma Akanksha , Elemento Olivier , Yantiss Rhonda K. , Chen Qiuying , Gross Steven S. , Galluzzi Lorenzo , Dow Lukas E. , Dannenberg Andrew J.
Published: April 2023

Summary of metabolite profiling results from DLD1 EV and PSAT1 KO cells cultured in complete or serine deficient medium.
Supplementary Data from A Combinatorial CRISPR–Cas9 Screen Identifies Ifenprodil as an Adjunct to Sorafenib for Liver Cancer Treatment
Authors: Xu Feng , Tong Man , Tong Cindy S.W. , Chan Becky K.C. , Chu Hoi Yee , Wong Tin Lok , Fong John H.C. , Cheung Maggie S.H. , Mak Kylie Hin-Man , Pardeshi Lakhansing , Huang Yuanhua , Wong Koon Ho , Choi Gigi C.G. , Ma Stephanie , Wong Alan S.L.
Published: April 2023

Supplementary Figures and Supplementary Materials and Methods
Table S2 from Exogenous and Endogenous Sources of Serine Contribute to Colon Cancer Metabolism, Growth, and Resistance to 5-Fluorouracil
Authors: Montrose David C. , Saha Suchandrima , Foronda Miguel , McNally Erin M. , Chen Justin , Zhou Xi Kathy , Ha Taehoon , Krumsiek Jan , Buyukozkan Mustafa , Verma Akanksha , Elemento Olivier , Yantiss Rhonda K. , Chen Qiuying , Gross Steven S. , Galluzzi Lorenzo , Dow Lukas E. , Dannenberg Andrew J.
Published: April 2023

Primers used for PCR amplification of gRNA constructs.
Supplementary Figure Legends from Exogenous and Endogenous Sources of Serine Contribute to Colon Cancer Metabolism, Growth, and Resistance to 5-Fluorouracil
Authors: Montrose David C. , Saha Suchandrima , Foronda Miguel , McNally Erin M. , Chen Justin , Zhou Xi Kathy , Ha Taehoon , Krumsiek Jan , Buyukozkan Mustafa , Verma Akanksha , Elemento Olivier , Yantiss Rhonda K. , Chen Qiuying , Gross Steven S. , Galluzzi Lorenzo , Dow Lukas E. , Dannenberg Andrew J.
Published: April 2023

Supplementary Figure Legends
Supplementary Tables from Metastasis-Entrained Eosinophils Enhance Lymphocyte-Mediated Antitumor Immunity
Authors: Grisaru-Tal Sharon , Dulberg Shai , Beck Lir , Zhang Chunyan , Itan Michal , Hediyeh-zadeh Soroor , Caldwell Julie , Rozenberg Perri , Dolitzky Avishay , Avlas Shmuel , Hazut Inbal , Gordon Yaara , Shani Ophir , Tsuriel Shlomo , Gerlic Motti , Erez Neta , Jacquelot Nicolas , Belz Gabrielle T. , Rothenberg Marc E. , Davis Melissa J. , Yu Hua , Geiger Tamar , Madi Asaf , Munitz Ariel
Published: April 2023

Supplementary tables
Supplementary Data from Metastasis-Entrained Eosinophils Enhance Lymphocyte-Mediated Antitumor Immunity
Authors: Grisaru-Tal Sharon , Dulberg Shai , Beck Lir , Zhang Chunyan , Itan Michal , Hediyeh-zadeh Soroor , Caldwell Julie , Rozenberg Perri , Dolitzky Avishay , Avlas Shmuel , Hazut Inbal , Gordon Yaara , Shani Ophir , Tsuriel Shlomo , Gerlic Motti , Erez Neta , Jacquelot Nicolas , Belz Gabrielle T. , Rothenberg Marc E. , Davis Melissa J. , Yu Hua , Geiger Tamar , Madi Asaf , Munitz Ariel
Published: April 2023

Supplementary Methods and Data- Changes are unmarked
Figure S7 from Exogenous and Endogenous Sources of Serine Contribute to Colon Cancer Metabolism, Growth, and Resistance to 5-Fluorouracil
Authors: Montrose David C. , Saha Suchandrima , Foronda Miguel , McNally Erin M. , Chen Justin , Zhou Xi Kathy , Ha Taehoon , Krumsiek Jan , Buyukozkan Mustafa , Verma Akanksha , Elemento Olivier , Yantiss Rhonda K. , Chen Qiuying , Gross Steven S. , Galluzzi Lorenzo , Dow Lukas E. , Dannenberg Andrew J.
Published: April 2023

Supplementary Figure S7. PSAT1 deletion does not alter utilization of exogenous serine to make nucleotides.
Figure S6 from Exogenous and Endogenous Sources of Serine Contribute to Colon Cancer Metabolism, Growth, and Resistance to 5-Fluorouracil
Authors: Montrose David C. , Saha Suchandrima , Foronda Miguel , McNally Erin M. , Chen Justin , Zhou Xi Kathy , Ha Taehoon , Krumsiek Jan , Buyukozkan Mustafa , Verma Akanksha , Elemento Olivier , Yantiss Rhonda K. , Chen Qiuying , Gross Steven S. , Galluzzi Lorenzo , Dow Lukas E. , Dannenberg Andrew J.
Published: April 2023

Supplementary Figure S6. Serine restriction does not induce nucleotide salvage.
Figure S5 from Exogenous and Endogenous Sources of Serine Contribute to Colon Cancer Metabolism, Growth, and Resistance to 5-Fluorouracil
Authors: Montrose David C. , Saha Suchandrima , Foronda Miguel , McNally Erin M. , Chen Justin , Zhou Xi Kathy , Ha Taehoon , Krumsiek Jan , Buyukozkan Mustafa , Verma Akanksha , Elemento Olivier , Yantiss Rhonda K. , Chen Qiuying , Gross Steven S. , Galluzzi Lorenzo , Dow Lukas E. , Dannenberg Andrew J.
Published: April 2023

Supplementary Figure S5. Intracellular serine levels are reduced under serine-deprived conditions.
Figure S4 from Exogenous and Endogenous Sources of Serine Contribute to Colon Cancer Metabolism, Growth, and Resistance to 5-Fluorouracil
Authors: Montrose David C. , Saha Suchandrima , Foronda Miguel , McNally Erin M. , Chen Justin , Zhou Xi Kathy , Ha Taehoon , Krumsiek Jan , Buyukozkan Mustafa , Verma Akanksha , Elemento Olivier , Yantiss Rhonda K. , Chen Qiuying , Gross Steven S. , Galluzzi Lorenzo , Dow Lukas E. , Dannenberg Andrew J.
Published: April 2023

Supplementary Figure S4. Validation of genome editing by PSAT1 gRNAs.
Supplementary Data from Engineering T Cells to Express Tumoricidal MDA-7/IL24 Enhances Cancer Immunotherapy
Authors: Liu Zheng , Guo Chunqing , Das Swadesh K. , Yu Xiaofei , Pradhan Anjan K. , Li Xia , Ning Yanxia , Chen Shixian , Liu Wenjie , Windle Jolene J. , Bear Harry D. , Manjili Masoud H. , Fisher Paul B. , Wang Xiang-Yang
Published: April 2023

Supplementary Figure S1. Characterization of tumor-sensitized T cells expanded with y-chain cytokines.
Supplementary Data from Engineering T Cells to Express Tumoricidal MDA-7/IL24 Enhances Cancer Immunotherapy
Authors: Liu Zheng , Guo Chunqing , Das Swadesh K. , Yu Xiaofei , Pradhan Anjan K. , Li Xia , Ning Yanxia , Chen Shixian , Liu Wenjie , Windle Jolene J. , Bear Harry D. , Manjili Masoud H. , Fisher Paul B. , Wang Xiang-Yang
Published: April 2023

Supplementary Figure S2. Schematic depiction of construction of human MDA-7/IL-24-encoding lentivirus (LV-MDA-7) and engineering of T cells.
Supplementary Data from Engineering T Cells to Express Tumoricidal MDA-7/IL24 Enhances Cancer Immunotherapy
Authors: Liu Zheng , Guo Chunqing , Das Swadesh K. , Yu Xiaofei , Pradhan Anjan K. , Li Xia , Ning Yanxia , Chen Shixian , Liu Wenjie , Windle Jolene J. , Bear Harry D. , Manjili Masoud H. , Fisher Paul B. , Wang Xiang-Yang
Published: April 2023

Supplementary Figure S3. MDA-7/IL-24 induces cytotoxicity in RM1 and B16 tumor cells.
Supplementary Data from Engineering T Cells to Express Tumoricidal MDA-7/IL24 Enhances Cancer Immunotherapy
Authors: Liu Zheng , Guo Chunqing , Das Swadesh K. , Yu Xiaofei , Pradhan Anjan K. , Li Xia , Ning Yanxia , Chen Shixian , Liu Wenjie , Windle Jolene J. , Bear Harry D. , Manjili Masoud H. , Fisher Paul B. , Wang Xiang-Yang
Published: April 2023

Supplementary Figure S5. Alterations of tumor immune environment by MDA-7-producing T cells.
Supplementary File 5 from Network Analysis Identifies Regulators of Basal-Like Breast Cancer Reprogramming and Endocrine Therapy Vulnerability
Authors: Choi Sea R. , Hwang Chae Young , Lee Jonghoon , Cho Kwang-Hyun
Published: April 2023

List of gene sets for Gene Set Variation Analysis.
Supplementary File 4 from Network Analysis Identifies Regulators of Basal-Like Breast Cancer Reprogramming and Endocrine Therapy Vulnerability
Authors: Choi Sea R. , Hwang Chae Young , Lee Jonghoon , Cho Kwang-Hyun
Published: April 2023

Genomic profile of basal-like cell lines in breast cancer.
Supplementary File 3 from Network Analysis Identifies Regulators of Basal-Like Breast Cancer Reprogramming and Endocrine Therapy Vulnerability
Authors: Choi Sea R. , Hwang Chae Young , Lee Jonghoon , Cho Kwang-Hyun
Published: April 2023

Boolean logical functions of basal-to-luminal A subtype transition network model.
Supplementary Data from Engineering T Cells to Express Tumoricidal MDA-7/IL24 Enhances Cancer Immunotherapy
Authors: Liu Zheng , Guo Chunqing , Das Swadesh K. , Yu Xiaofei , Pradhan Anjan K. , Li Xia , Ning Yanxia , Chen Shixian , Liu Wenjie , Windle Jolene J. , Bear Harry D. , Manjili Masoud H. , Fisher Paul B. , Wang Xiang-Yang
Published: April 2023

Supplementary Figure S8. Upregulation of endogenous MDA-7 in mouse cancer cells is not caused by human MDA-7 produced by engineered T cells.
Supplementary Figure from NR2F1 Is a Barrier to Dissemination of Early-Stage Breast Cancer Cells
Authors: Rodriguez-Tirado Carolina , Kale Nupura , Carlini Maria J. , Shrivastava Nitisha , Rodrigues Alcina A. , Khalil Bassem D. , Bravo-Cordero Jose Javier , Hong Yan , Alexander Melissa , Ji Jiayi , Behbod Fariba , Sosa Maria Soledad
Published: April 2023

Supplementary Figure from NR2F1 Is a Barrier to Dissemination of Early-Stage Breast Cancer Cells
Supplementary Data from NR2F1 Is a Barrier to Dissemination of Early-Stage Breast Cancer Cells
Authors: Rodriguez-Tirado Carolina , Kale Nupura , Carlini Maria J. , Shrivastava Nitisha , Rodrigues Alcina A. , Khalil Bassem D. , Bravo-Cordero Jose Javier , Hong Yan , Alexander Melissa , Ji Jiayi , Behbod Fariba , Sosa Maria Soledad
Published: April 2023

Supplementary Data from NR2F1 Is a Barrier to Dissemination of Early-Stage Breast Cancer Cells
Supplementary Data from Quantification of T- and B-cell Immune Receptor Distribution Diversity Characterizes Immune Cell Infiltration and Lymphocyte Heterogeneity in Clear Cell Renal Cell Carcinoma
Authors: Ferrall-Fairbanks Meghan C. , Chakiryan Nicholas H. , Chobrutskiy Boris I. , Kim Youngchul , Teer Jamie K. , Berglund Anders , Mulé James J. , Fournier Michelle , Siegel Erin M. , Dhillon Jasreman , Falasiri Seyed Shayan A. , Arturo Juan F. , Katende Esther N. , Blanck George , Manley Brandon J. , Altrock Philipp M.
Published: April 2023

Supplementary Data from Quantification of T- and B-cell Immune Receptor Distribution Diversity Characterizes Immune Cell Infiltration and Lymphocyte Heterogeneity in Clear Cell Renal Cell Carcinoma
Supplementary Information from Neoadjuvant In Situ Immunomodulation Enhances Systemic Antitumor Immunity against Highly Metastatic Tumors
Authors: Oba Takaaki , Kajihara Ryutaro , Yokoi Toshihiro , Repasky Elizabeth A. , Ito Fumito
Published: April 2023

Supplementary Information
Supplementary Tables from KMT9 Controls Stemness and Growth of Colorectal Cancer
Authors: Berlin Christopher , Cottard Félicie , Willmann Dominica , Urban Sylvia , Tirier Stephan M. , Marx Lisa , Rippe Karsten , Schmitt Mark , Petrocelli Valentina , Greten Florian R. , Fichtner-Feigl Stefan , Kesselring Rebecca , Metzger Eric , Schüle Roland
Published: April 2023

File with all the Supplementary Tables (Supplementary Tables S1-S3)
Supplementary Materials and Methods from KMT9 Controls Stemness and Growth of Colorectal Cancer
Authors: Berlin Christopher , Cottard Félicie , Willmann Dominica , Urban Sylvia , Tirier Stephan M. , Marx Lisa , Rippe Karsten , Schmitt Mark , Petrocelli Valentina , Greten Florian R. , Fichtner-Feigl Stefan , Kesselring Rebecca , Metzger Eric , Schüle Roland
Published: April 2023

File with all the Supplementary Materials and Methods
Supplementary Table from Single-Cell Analysis Unveils the Role of the Tumor Immune Microenvironment and Notch Signaling in Dormant Minimal Residual Disease
Authors: Janghorban Mahnaz , Yang Yuchen , Zhao Na , Hamor Clark , Nguyen Tuan M. , Zhang Xiang H.-F. , Rosen Jeffrey M.
Published: April 2023

Supplementary Table from Single-Cell Analysis Unveils the Role of the Tumor Immune Microenvironment and Notch Signaling in Dormant Minimal Residual Disease
Supplementary Data from Cancer Mutational Processes Vary in Their Association with Replication Timing and Chromatin Accessibility
Authors: Yaacov Adar , Vardi Oriya , Blumenfeld Britny , Greenberg Avraham , Massey Dashiell J. , Koren Amnon , Adar Sheera , Simon Itamar , Rosenberg Shai
Published: April 2023

Supplementary Figures 1-11, Supplementary Tables 1-2
Supplementary Figure from Single-Cell Analysis Unveils the Role of the Tumor Immune Microenvironment and Notch Signaling in Dormant Minimal Residual Disease
Authors: Janghorban Mahnaz , Yang Yuchen , Zhao Na , Hamor Clark , Nguyen Tuan M. , Zhang Xiang H.-F. , Rosen Jeffrey M.
Published: April 2023

Supplementary Figure from Single-Cell Analysis Unveils the Role of the Tumor Immune Microenvironment and Notch Signaling in Dormant Minimal Residual Disease
Supplementary Data from AMPK–mTOR–Mediated Activation of Autophagy Promotes Formation of Dormant Polyploid Giant Cancer Cells
Authors: You Bo , Xia Tian , Gu Miao , Zhang Zhenxin , Zhang Qicheng , Shen Jianhong , Fan Yue , Yao Hui , Pan Si , Lu Yingna , Cheng Tianyi , Yang Zhiyuan , He Xin , Zhang Hao , Shi Muqi , Liu Dong , You Yiwen
Published: April 2023

Supplementary Data from AMPK–mTOR–Mediated Activation of Autophagy Promotes Formation of Dormant Polyploid Giant Cancer Cells
Supplementary Figure from Colorectal Cancer Is Associated with the Presence of Cancer Driver Mutations in Normal Colon
Authors: Matas Julia , Kohrn Brendan , Fredrickson Jeanne , Carter Kelly , Yu Ming , Wang Ting , Gui Xianyong , Soussi Thierry , Moreno Victor , Grady William M. , Peinado Miguel A. , Risques Rosa Ana
Published: April 2023

Supplementary Figure from Colorectal Cancer Is Associated with the Presence of Cancer Driver Mutations in Normal Colon
Supplementary Table from Association of Genetic Ancestry and Molecular Signatures with Cancer Survival Disparities: A Pan-Cancer Analysis
Authors: Lee Kara Keun , Rishishwar Lavanya , Ban Dongjo , Nagar Shashwat Deepali , Mariño-Ramírez Leonardo , McDonald John F. , Jordan I. King
Published: April 2023

Supplementary Table from Association of Genetic Ancestry and Molecular Signatures with Cancer Survival Disparities: A Pan-Cancer Analysis
Supplementary Data from Expansion of Gastric Intestinal Metaplasia with Copy Number Aberrations Contributes to Field Cancerization
Authors: Kumagai Ken , Shimizu Takahiro , Takai Atsushi , Kakiuchi Nobuyuki , Takeuchi Yasuhide , Hirano Tomonori , Takeda Haruhiko , Mizuguchi Aya , Teramura Mari , Ito Takahiko , Iguchi Eriko , Nikaido Mitsuhiro , Eso Yuji , Takahashi Ken , Ueda Yoshihide , Miyamoto Shin'ichi , Obama Kazutaka , Ogawa Seishi , Marusawa Hiroyuki , Seno Hiroshi
Published: April 2023

Supplementary Data from Expansion of Gastric Intestinal Metaplasia with Copy Number Aberrations Contributes to Field Cancerization
Supplementary Figure from Combinatorial Inactivation of Tumor Suppressors Efficiently Initiates Lung Adenocarcinoma with Therapeutic Vulnerabilities
Authors: Yousefi Maryam , Boross Gábor , Weiss Carly , Murray Christopher W. , Hebert Jess D. , Cai Hongchen , Ashkin Emily L. , Karmakar Saswati , Andrejka Laura , Chen Leo , Wang Minwei , Tsai Min K. , Lin Wen-Yang , Li Chuan , Yakhchalian Pegah , Colón Caterina I. , Chew Su-Kit , Chu Pauline , Swanton Charles , Kunder Christian A. , Petrov Dmitri A. , Winslow Monte M.
Published: April 2023

Supplementary Figure from Combinatorial Inactivation of Tumor Suppressors Efficiently Initiates Lung Adenocarcinoma with Therapeutic Vulnerabilities
Supplementary Data from Combinatorial Inactivation of Tumor Suppressors Efficiently Initiates Lung Adenocarcinoma with Therapeutic Vulnerabilities
Authors: Yousefi Maryam , Boross Gábor , Weiss Carly , Murray Christopher W. , Hebert Jess D. , Cai Hongchen , Ashkin Emily L. , Karmakar Saswati , Andrejka Laura , Chen Leo , Wang Minwei , Tsai Min K. , Lin Wen-Yang , Li Chuan , Yakhchalian Pegah , Colón Caterina I. , Chew Su-Kit , Chu Pauline , Swanton Charles , Kunder Christian A. , Petrov Dmitri A. , Winslow Monte M.
Published: April 2023

Supplementary Data from Combinatorial Inactivation of Tumor Suppressors Efficiently Initiates Lung Adenocarcinoma with Therapeutic Vulnerabilities
Supplementary Data from Differential Gain-of-Function Activity of Three p53 Hotspot Mutants In Vivo
Authors: Xiong Shunbin , Chachad Dhruv , Zhang Yun , Gencel-Augusto Jovanka , Sirito Mario , Pant Vinod , Yang Peirong , Sun Chang , Chau Gilda , Qi Yuan , Su Xiaoping , Whitley Elizabeth M. , El-Naggar Adel K. , Lozano Guillermina
Published: April 2023

Supplementary Data from Differential Gain-of-Function Activity of Three p53 Hotspot Mutants In Vivo
Supplementary Table from A Genome-Wide CRISPR Activation Screen Identifies PRRX2 as a Regulator of Enzalutamide Resistance in Prostate Cancer
Authors: Rodríguez Yara , Unno Kenji , Truica Mihai I. , Chalmers Zachary R. , Yoo Young A. , Vatapalli Rajita , Sagar Vinay , Yu Jindan , Lysy Barbara , Hussain Maha , Han Huiying , Abdulkadir Sarki A.
Published: April 2023

Supplementary Table from A Genome-Wide CRISPR Activation Screen Identifies PRRX2 as a Regulator of Enzalutamide Resistance in Prostate Cancer
Supplementary Data from RNA Helicase DHX37 Facilitates Liver Cancer Progression by Cooperating with PLRG1 to Drive Superenhancer-Mediated Transcription of Cyclin D1
Authors: Liu Zhen , Ye Youqiong , Liu Yizhe , Liu Yanfang , Chen Huifang , Shen Mengting , Wang Zhen , Huang Shenglin , Han Leng , Chen Zhiao , He Xianghuo
Published: April 2023

Supplementary Data from RNA Helicase DHX37 Facilitates Liver Cancer Progression by Cooperating with PLRG1 to Drive Superenhancer-Mediated Transcription of Cyclin D1
Supplementary Table 7 from Reorganization of the 3D Genome Pinpoints Noncoding Drivers of Primary Prostate Tumors
Authors: Hawley James R. , Zhou Stanley , Arlidge Christopher , Grillo Giacomo , Kron Ken J. , Hugh-White Rupert , van der Kwast Theodorus H. , Fraser Michael , Boutros Paul C. , Bristow Robert G. , Lupien Mathieu
Published: April 2023

Simple and complex SVs reconstructed from SV breakpoints.
Figure S1 from Neoadjuvant Chemotherapy Induces Genomic and Transcriptomic Changes in Ovarian Cancer
Authors: Javellana Melissa , Eckert Mark A. , Heide Janna , Zawieracz Katarzyna , Weigert Melanie , Ashley Sarah , Stock Elizabeth , Chapel David , Huang Lei , Yamada S. Diane , Ahmed Ahmed Ashour , Lastra Ricardo R. , Chen Mengjie , Lengyel Ernst
Published: April 2023

Supplementary Figure 1
Supplementary Figure 5 from Reorganization of the 3D Genome Pinpoints Noncoding Drivers of Primary Prostate Tumors
Authors: Hawley James R. , Zhou Stanley , Arlidge Christopher , Grillo Giacomo , Kron Ken J. , Hugh-White Rupert , van der Kwast Theodorus H. , Fraser Michael , Boutros Paul C. , Bristow Robert G. , Lupien Mathieu
Published: April 2023

Relationship between inter-chromosomal rearrangements and differential gene expression.
Supplementary Figure 3 from Reorganization of the 3D Genome Pinpoints Noncoding Drivers of Primary Prostate Tumors
Authors: Hawley James R. , Zhou Stanley , Arlidge Christopher , Grillo Giacomo , Kron Ken J. , Hugh-White Rupert , van der Kwast Theodorus H. , Fraser Michael , Boutros Paul C. , Bristow Robert G. , Lupien Mathieu
Published: April 2023

Characterization of chromatin interactions in benign and tumour tissue.
Supplementary Table 5 from Plasticity in the Absence of NOTCH Uncovers a RUNX2-Dependent Pathway in Small Cell Lung Cancer
Authors: Hong Deli , Knelson Erik H. , Li Yixiang , Durmaz Yavuz T. , Gao Wenhua , Walton Emily , Vajdi Amir , Thai Tran , Sticco-Ivins Maura , Sabet Amin H. , Jones Kristen L. , Schinzel Anna C. , Bronson Rod T. , Nguyen Quang-De , Tolstorukov Michael Y. , Vivero Marina , Signoretti Sabina , Barbie David A. , Oser Matthew G.
Published: April 2023

LISA analysis of master regulators of differentially expressed genes
Supplementary Table 4 from Plasticity in the Absence of NOTCH Uncovers a RUNX2-Dependent Pathway in Small Cell Lung Cancer
Authors: Hong Deli , Knelson Erik H. , Li Yixiang , Durmaz Yavuz T. , Gao Wenhua , Walton Emily , Vajdi Amir , Thai Tran , Sticco-Ivins Maura , Sabet Amin H. , Jones Kristen L. , Schinzel Anna C. , Bronson Rod T. , Nguyen Quang-De , Tolstorukov Michael Y. , Vivero Marina , Signoretti Sabina , Barbie David A. , Oser Matthew G.
Published: April 2023

GSEA analysis of RNA-seq of SCLC adherent cells
Supplementary Table 1 from Plasticity in the Absence of NOTCH Uncovers a RUNX2-Dependent Pathway in Small Cell Lung Cancer
Authors: Hong Deli , Knelson Erik H. , Li Yixiang , Durmaz Yavuz T. , Gao Wenhua , Walton Emily , Vajdi Amir , Thai Tran , Sticco-Ivins Maura , Sabet Amin H. , Jones Kristen L. , Schinzel Anna C. , Bronson Rod T. , Nguyen Quang-De , Tolstorukov Michael Y. , Vivero Marina , Signoretti Sabina , Barbie David A. , Oser Matthew G.
Published: April 2023

RNA-seq data of bulk lung tumors from sgControl RPP, sgNotch1 RPP, sgNotch2 RPP, and sgAscl1 RPP CRISPR-based SCLC GEMMs
Supplementary Data from EGFR Inhibition Enhances the Cellular Uptake and Antitumor-Activity of the HER3 Antibody–Drug Conjugate HER3–DXd
Authors: Haikala Heidi M. , Lopez Timothy , Köhler Jens , Eser Pinar O. , Xu Man , Zeng Qing , Teceno Tyler J. , Ngo Kenneth , Zhao Yutong , Ivanova Elena V. , Bertram Arrien A. , Leeper Brittaney A. , Chambers Emily S. , Adeni Anika E. , Taus Luke J. , Kuraguchi Mari , Kirschmeier Paul T. , Yu Channing , Shiose Yoshinobu , Kamai Yasuki , Qiu Yang , Paweletz Cloud P. , Gokhale Prafulla C. , Jänne Pasi A.
Published: April 2023

Supplementary Figures and legends
Supplementary Table from A Short Isoform of Spermatogenic Enzyme GAPDHS Functions as a Metabolic Switch and Limits Metastasis in Melanoma
Authors: Gill Jennifer G. , Leef Samantha N. , Ramesh Vijayashree , Martin-Sandoval Misty S. , Rao Aparna D. , West Lindsey , Muh Sarah , Gu Wen , Zhao Zhiyu , Hosler Gregory A. , Vandergriff Travis W. , Durham Alison B. , Mathews Thomas P. , Aurora Arin B.
Published: April 2023

Supplementary Table from A Short Isoform of Spermatogenic Enzyme GAPDHS Functions as a Metabolic Switch and Limits Metastasis in Melanoma
Supplementary Figure from EBV Infection in Epithelial Malignancies Induces Resistance to Antitumor Natural Killer Cells via F3-Mediated Platelet Aggregation
Authors: Duan Xiaobing , Chen Haiwen , Zhou Xiang , Liu Pingjuan , Zhang Xiao , Zhu Qian , Zhong Ling , Zhang Wanlin , Zhang Shanshan , Zhang Xinyu , Chen Yanhong , Zhou Yan , Yang Chaopin , Feng Qisheng , Zeng Yi-Xin , Xu Miao , Xiang Tong
Published: April 2023

Supplementary Figure from EBV Infection in Epithelial Malignancies Induces Resistance to Antitumor Natural Killer Cells via F3-Mediated Platelet Aggregation
Supplementary Figure from A Short Isoform of Spermatogenic Enzyme GAPDHS Functions as a Metabolic Switch and Limits Metastasis in Melanoma
Authors: Gill Jennifer G. , Leef Samantha N. , Ramesh Vijayashree , Martin-Sandoval Misty S. , Rao Aparna D. , West Lindsey , Muh Sarah , Gu Wen , Zhao Zhiyu , Hosler Gregory A. , Vandergriff Travis W. , Durham Alison B. , Mathews Thomas P. , Aurora Arin B.
Published: April 2023

Supplementary Figure from A Short Isoform of Spermatogenic Enzyme GAPDHS Functions as a Metabolic Switch and Limits Metastasis in Melanoma
Supplementary Figure from IgA-Dominated Humoral Immune Responses Govern Patients' Outcome in Endometrial Cancer
Authors: Mandal Gunjan , Biswas Subir , Anadon Carmen M. , Yu Xiaoqing , Gatenbee Chandler D. , Prabhakaran Sandhya , Payne Kyle K. , Chaurio Ricardo A. , Martin Alexandra , Innamarato Patrick , Moran Carlos , Powers John J. , Harro Carly M. , Mine Jessica A. , Sprenger Kimberly B. , Rigolizzo Kristen E. , Wang Xuefeng , Curiel Tyler J. , Rodriguez Paulo C. , Anderson Alexander R. , Saglam Ozlen , Conejo-Garcia Jose R.
Published: April 2023

Supplementary Figure from IgA-Dominated Humoral Immune Responses Govern Patients' Outcome in Endometrial Cancer
Supplementary Video 2 from Novel Mouse Models of Bladder Cancer Identify a Prognostic Signature Associated with Risk of Disease Progression
Authors: Park Soonbum , Rong Lijie , Owczarek Tomasz B. , Bernardo Matteo Di , Shoulson Rivka L. , Chua Chee-Wai , Kim Jaime Y. , Lankarani Amir , Chakrapani Prithi , Syed Talal , McKiernan James M. , Solit David B. , Shen Michael M. , Al-Ahmadie Hikmat A. , Abate-Shen Cory
Published: April 2023

Video of mouse surgical procedures for transurethral delivery of Adenovirus to bladder
Supplementary Figures and legends from FGFR3 Destabilizes PD-L1 via NEDD4 to Control T-cell–Mediated Bladder Cancer Immune Surveillance
Authors: Jing Weiqiang , Wang Ganyu , Cui Zhiwei , Xiong Gaozhong , Jiang Xin , Li Yue , Li Wushan , Han Bo , Chen Shouzhen , Shi Benkang
Published: April 2023

Supplementary Figures and legends
Supplementary Procedures from Novel Mouse Models of Bladder Cancer Identify a Prognostic Signature Associated with Risk of Disease Progression
Authors: Park Soonbum , Rong Lijie , Owczarek Tomasz B. , Bernardo Matteo Di , Shoulson Rivka L. , Chua Chee-Wai , Kim Jaime Y. , Lankarani Amir , Chakrapani Prithi , Syed Talal , McKiernan James M. , Solit David B. , Shen Michael M. , Al-Ahmadie Hikmat A. , Abate-Shen Cory
Published: April 2023

Detailed procedures to accompany the videos
Figure S6 from Genomic and Transcriptomic Analysis of Relapsed and Refractory Childhood Solid Tumors Reveals a Diverse Molecular Landscape and Mechanisms of Immune Evasion
Authors: Byron Sara A. , Hendricks William P.D. , Nagulapally Abhinav B. , Kraveka Jacqueline M. , Ferguson William S. , Brown Valerie I. , Eslin Don E. , Mitchell Deanna , Cornelius Albert , Roberts William , Isakoff Michael S. , Oesterheld Javier E. , Wada Randal K. , Rawwas Jawhar , Neville Kathleen , Zage Peter E. , Harrod Virginia L. , Bergendahl Genevieve , VanSickle Elizabeth , Dykema Karl , Bond Jeffrey , Chou Hsien-Chao , Wei Jun S. , Wen Xinyu , Reardon Hue V. , Roos Alison , Nasser Sara , Izatt Tyler , Enriquez Daniel , Hegde Apurva M. , Cisneros Faith , Christofferson Austin , Turner Bryce , Szelinger Szabolcs , Keats Jonathan J. , Halperin Rebecca F. , Khan Javed , Saulnier Sholler Giselle L. , Trent Jeffrey M.
Published: April 2023

Additional Longitudinal Analysis of Relapsed and Refractory Childhood Solid Tumors.
Figure S1 from Genomic and Transcriptomic Analysis of Relapsed and Refractory Childhood Solid Tumors Reveals a Diverse Molecular Landscape and Mechanisms of Immune Evasion
Authors: Byron Sara A. , Hendricks William P.D. , Nagulapally Abhinav B. , Kraveka Jacqueline M. , Ferguson William S. , Brown Valerie I. , Eslin Don E. , Mitchell Deanna , Cornelius Albert , Roberts William , Isakoff Michael S. , Oesterheld Javier E. , Wada Randal K. , Rawwas Jawhar , Neville Kathleen , Zage Peter E. , Harrod Virginia L. , Bergendahl Genevieve , VanSickle Elizabeth , Dykema Karl , Bond Jeffrey , Chou Hsien-Chao , Wei Jun S. , Wen Xinyu , Reardon Hue V. , Roos Alison , Nasser Sara , Izatt Tyler , Enriquez Daniel , Hegde Apurva M. , Cisneros Faith , Christofferson Austin , Turner Bryce , Szelinger Szabolcs , Keats Jonathan J. , Halperin Rebecca F. , Khan Javed , Saulnier Sholler Giselle L. , Trent Jeffrey M.
Published: April 2023

GISTIC Analysis of 184 Relapsed and Refractory Childhood Solid Tumors.
Supplementary Data from Ketogenesis Attenuates KLF5-Dependent Production of CXCL12 to Overcome the Immunosuppressive Tumor Microenvironment in Colorectal Cancer
Authors: Wei Ruozheng , Zhou Yuning , Li Chang , Rychahou Piotr , Zhang Shulin , Titlow William B. , Bauman Greg , Wu Yuanyuan , Liu Jinpeng , Wang Chi , Weiss Heidi L. , Evers B. Mark , Wang Qingding
Published: April 2023

Supplementary Data from Ketogenesis Attenuates KLF5-Dependent Production of CXCL12 to Overcome the Immunosuppressive Tumor Microenvironment in Colorectal Cancer
Supplementary Data from Prostaglandin Pathways: Opportunities for Cancer Prevention and Therapy
Authors: Wang Qiushi , Morris Rebecca J. , Bode Ann M. , Zhang Tianshun
Published: April 2023

Supplementary Data from Prostaglandin Pathways: Opportunities for Cancer Prevention and Therapy
Supplementary Data from Chemotherapy-Induced Collagen IV Drives Cancer Cell Motility through Activation of Src and Focal Adhesion Kinase
Authors: Fatherree Jackson P. , Guarin Justinne R. , McGinn Rachel A. , Naber Stephen P. , Oudin Madeleine J.
Published: April 2023

Supplementary Data from Chemotherapy-Induced Collagen IV Drives Cancer Cell Motility through Activation of Src and Focal Adhesion Kinase
Supplementary Data from The Roles of RNA Helicases in DNA Damage Repair and Tumorigenesis Reveal Precision Therapeutic Strategies
Authors: Xie Jinru , Wen Ming , Zhang Jiao , Wang Zheng , Wang Meng , Qiu Yanfang , Zhao Wenchao , Zhu Fang , Yao Mianfeng , Rong Zhuoxian , Hu Wenfeng , Pei Qian , Sun Xiaoxiang , Li Jinchen , Mao Zhiyong , Sun Lun-Quan , Tan Rong
Published: April 2023

Supplementary Data from The Roles of RNA Helicases in DNA Damage Repair and Tumorigenesis Reveal Precision Therapeutic Strategies
Supplementary Table from PGC1α/β Expression Predicts Therapeutic Response to Oxidative Phosphorylation Inhibition in Ovarian Cancer
Authors: Ghilardi Carmen , Moreira-Barbosa Catarina , Brunelli Laura , Ostano Paola , Panini Nicolò , Lupi Monica , Anastasia Alessia , Fiordaliso Fabio , Salio Monica , Formenti Laura , Russo Massimo , Arrigoni Edoardo , Chiaradonna Ferdinando , Chiorino Giovanna , Draetta Giulio , Marszalek Joseph R. , Vellano Christopher P. , Pastorelli Roberta , Bani MariaRosa , Decio Alessandra , Giavazzi Raffaella
Published: April 2023

Supplementary Table from PGC1α/β Expression Predicts Therapeutic Response to Oxidative Phosphorylation Inhibition in Ovarian Cancer
Supplementary Table from Comprehensive Evaluation of Machine Learning Models and Gene Expression Signatures for Prostate Cancer Prognosis Using Large Population Cohorts
Authors: Li Ruidong , Zhu Jianguo , Zhong Wei-De , Jia Zhenyu
Published: April 2023

Supplementary Table from Comprehensive Evaluation of Machine Learning Models and Gene Expression Signatures for Prostate Cancer Prognosis Using Large Population Cohorts
Supplementary Figure from Comprehensive Evaluation of Machine Learning Models and Gene Expression Signatures for Prostate Cancer Prognosis Using Large Population Cohorts
Authors: Li Ruidong , Zhu Jianguo , Zhong Wei-De , Jia Zhenyu
Published: April 2023

Supplementary Figure from Comprehensive Evaluation of Machine Learning Models and Gene Expression Signatures for Prostate Cancer Prognosis Using Large Population Cohorts
Supplementary Figure from Preclinical In Vivo Validation of the RAD51 Test for Identification of Homologous Recombination-Deficient Tumors and Patient Stratification
Authors: Pellegrino Benedetta , Herencia-Ropero Andrea , Llop-Guevara Alba , Pedretti Flaminia , Moles-Fernández Alejandro , Viaplana Cristina , Villacampa Guillermo , Guzmán Marta , Rodríguez Olga , Grueso Judit , Jiménez Jose , Arenas Enrique J. , Degasperi Andrea , Dias João M.L. , Forment Josep V. , O'Connor Mark J. , Déas Olivier , Cairo Stefano , Zhou Yinghui , Musolino Antonino , Caldas Carlos , Nik-Zainal Serena , Clarke Robert B. , Nuciforo Paolo , Díez Orland , Serres-Créixams Xavier , Peg Vicente , Espinosa-Bravo Martín , Macarulla Teresa , Oaknin Ana , Mateo Joaquin , Arribas Joaquín , Dienstmann Rodrigo , Bellet Meritxell , Oliveira Mafalda , Saura Cristina , Gutiérrez-Enríquez Sara , Balmaña Judith , Serra Violeta
Published: April 2023

Supplementary Figure from Preclinical In Vivo Validation of the RAD51 Test for Identification of Homologous Recombination-Deficient Tumors and Patient Stratification
Supplementary Data from Preclinical In Vivo Validation of the RAD51 Test for Identification of Homologous Recombination-Deficient Tumors and Patient Stratification
Authors: Pellegrino Benedetta , Herencia-Ropero Andrea , Llop-Guevara Alba , Pedretti Flaminia , Moles-Fernández Alejandro , Viaplana Cristina , Villacampa Guillermo , Guzmán Marta , Rodríguez Olga , Grueso Judit , Jiménez Jose , Arenas Enrique J. , Degasperi Andrea , Dias João M.L. , Forment Josep V. , O'Connor Mark J. , Déas Olivier , Cairo Stefano , Zhou Yinghui , Musolino Antonino , Caldas Carlos , Nik-Zainal Serena , Clarke Robert B. , Nuciforo Paolo , Díez Orland , Serres-Créixams Xavier , Peg Vicente , Espinosa-Bravo Martín , Macarulla Teresa , Oaknin Ana , Mateo Joaquin , Arribas Joaquín , Dienstmann Rodrigo , Bellet Meritxell , Oliveira Mafalda , Saura Cristina , Gutiérrez-Enríquez Sara , Balmaña Judith , Serra Violeta
Published: April 2023

Supplementary Data from Preclinical In Vivo Validation of the RAD51 Test for Identification of Homologous Recombination-Deficient Tumors and Patient Stratification
Supplementary Figure from Comprehensive Analysis of Metabolic Isozyme Targets in Cancer
Authors: Marczyk Michal , Gunasekharan Vignesh , Casadevall David , Qing Tao , Foldi Julia , Sehgal Raghav , Shan Naing Lin , Blenman Kim R.M. , O'Meara Tess A. , Umlauf Sheila , Surovtseva Yulia V. , Muthusamy Viswanathan , Rinehart Jesse , Perry Rachel J. , Kibbey Richard , Hatzis Christos , Pusztai Lajos
Published: April 2023

Supplementary Figure from Comprehensive Analysis of Metabolic Isozyme Targets in Cancer
Supplementary Data from Patient-Derived Triple-Negative Breast Cancer Organoids Provide Robust Model Systems That Recapitulate Tumor Intrinsic Characteristics
Authors: Bhatia Sonam , Kramer Melissa , Russo Suzanne , Naik Payal , Arun Gayatri , Brophy Kyle , Andrews Peter , Fan Cheng , Perou Charles M. , Preall Jonathan , Ha Taehoon , Plenker Dennis , Tuveson David A. , Rishi Arvind , Wilkinson John E. , McCombie W. Richard , Kostroff Karen , Spector David L.
Published: April 2023

Supplementary Data from Patient-Derived Triple-Negative Breast Cancer Organoids Provide Robust Model Systems That Recapitulate Tumor Intrinsic Characteristics
Supplementary Data from Elimination of Radiation-Induced Senescence in the Brain Tumor Microenvironment Attenuates Glioblastoma Recurrence
Authors: Fletcher-Sananikone Eliot , Kanji Suman , Tomimatsu Nozomi , Di Cristofaro Luis Fernando Macedo , Kollipara Rahul K. , Saha Debabrata , Floyd John R. , Sung Patrick , Hromas Robert , Burns Terry C. , Kittler Ralf , Habib Amyn A. , Mukherjee Bipasha , Burma Sandeep
Published: April 2023

Supplemental Figures 1-5
Supplementary Table from Oncogenic and Tumor-Suppressive Functions of the RNA Demethylase FTO
Authors: Zuidhof Hidde R. , Calkhoven Cornelis F.
Published: April 2023

Supplementary Table from Oncogenic and Tumor-Suppressive Functions of the RNA Demethylase FTO
Supplementary Table from CRISPR/Cas9-Induced DNA Damage Enriches for Mutations in a p53-Linked Interactome: Implications for CRISPR-Based Therapies
Authors: Jiang Long , Ingelshed Katrine , Shen Yunbing , Boddul Sanjaykumar V. , Iyer Vaishnavi Srinivasan , Kasza Zsolt , Sedimbi Saikiran , Lane David P. , Wermeling Fredrik
Published: April 2023

Supplementary Table from CRISPR/Cas9-Induced DNA Damage Enriches for Mutations in a p53-Linked Interactome: Implications for CRISPR-Based Therapies
Supplementary Figure from CRISPR/Cas9-Induced DNA Damage Enriches for Mutations in a p53-Linked Interactome: Implications for CRISPR-Based Therapies
Authors: Jiang Long , Ingelshed Katrine , Shen Yunbing , Boddul Sanjaykumar V. , Iyer Vaishnavi Srinivasan , Kasza Zsolt , Sedimbi Saikiran , Lane David P. , Wermeling Fredrik
Published: April 2023

Supplementary Figure from CRISPR/Cas9-Induced DNA Damage Enriches for Mutations in a p53-Linked Interactome: Implications for CRISPR-Based Therapies
Supplementary Data from CRISPR/Cas9-Induced DNA Damage Enriches for Mutations in a p53-Linked Interactome: Implications for CRISPR-Based Therapies
Authors: Jiang Long , Ingelshed Katrine , Shen Yunbing , Boddul Sanjaykumar V. , Iyer Vaishnavi Srinivasan , Kasza Zsolt , Sedimbi Saikiran , Lane David P. , Wermeling Fredrik
Published: April 2023

Supplementary Data from CRISPR/Cas9-Induced DNA Damage Enriches for Mutations in a p53-Linked Interactome: Implications for CRISPR-Based Therapies
Supplementary Figure from CIC-Mediated Modulation of MAPK Signaling Opposes Receptor Tyrosine Kinase Inhibitor Response in Kinase-Addicted Sarcoma
Authors: Odintsov Igor , Ortiz Michael V. , Khodos Inna , Mattar Marissa S. , Lui Allan J.W. , Kohsaka Shinji , de Stanchina Elisa , Bender Julia L. Glade , Ladanyi Marc , Somwar Romel
Published: April 2023

Supplementary Figure from CIC-Mediated Modulation of MAPK Signaling Opposes Receptor Tyrosine Kinase Inhibitor Response in Kinase-Addicted Sarcoma
Supplementary Figure from Structure, Dynamics, and Impact of Replication Stress–Induced Structural Variants in Hepatocellular Carcinoma
Authors: Bayard Quentin , Cordier Pierre , Péneau Camille , Imbeaud Sandrine , Hirsch Theo Z. , Renault Victor , Nault Jean-Charles , Blanc Jean-Frédéric , Calderaro Julien , Desdouets Chantal , Zucman-Rossi Jessica , Letouzé Eric
Published: April 2023

Supplementary Figure from Structure, Dynamics, and Impact of Replication Stress–Induced Structural Variants in Hepatocellular Carcinoma
Supplementary Data from Structure, Dynamics, and Impact of Replication Stress–Induced Structural Variants in Hepatocellular Carcinoma
Authors: Bayard Quentin , Cordier Pierre , Péneau Camille , Imbeaud Sandrine , Hirsch Theo Z. , Renault Victor , Nault Jean-Charles , Blanc Jean-Frédéric , Calderaro Julien , Desdouets Chantal , Zucman-Rossi Jessica , Letouzé Eric
Published: April 2023

Supplementary Data from Structure, Dynamics, and Impact of Replication Stress–Induced Structural Variants in Hepatocellular Carcinoma
Supplementary Data from Leveraging Allele-Specific Expression for Therapeutic Response Gene Discovery in Glioblastoma
Authors: Sen Arko , Prager Briana C. , Zhong Cuiqing , Park Donglim , Zhu Zhe , Gimple Ryan C. , Wu Qiulian , Bernatchez Jean A. , Beck Sungjun , Clark Alex E. , Siqueira-Neto Jair L. , Rich Jeremy N. , McVicker Graham
Published: April 2023

Supplementary Data from Leveraging Allele-Specific Expression for Therapeutic Response Gene Discovery in Glioblastoma
Supplementary Data from A Pan-Cancer Immunogenomic Atlas for Immune Checkpoint Blockade Immunotherapy
Authors: Yang Jing , Zhao Shilin , Wang Jing , Sheng Quanhu , Liu Qi , Shyr Yu
Published: April 2023

Supplementary Data from A Pan-Cancer Immunogenomic Atlas for Immune Checkpoint Blockade Immunotherapy
Supplementary Data from ATR Inhibitor AZD6738 (Ceralasertib) Exerts Antitumor Activity as a Monotherapy and in Combination with Chemotherapy and the PARP Inhibitor Olaparib
Authors: Wilson Zena , Odedra Rajesh , Wallez Yann , Wijnhoven Paul W.G. , Hughes Adina M. , Gerrard Joe , Jones Gemma N. , Bargh-Dawson Hannah , Brown Elaine , Young Lucy A. , O'Connor Mark J. , Lau Alan
Published: April 2023

Supplementary Data from ATR Inhibitor AZD6738 (Ceralasertib) Exerts Antitumor Activity as a Monotherapy and in Combination with Chemotherapy and the PARP Inhibitor Olaparib