bluuebunny/crossref_metadata_2025 huggingface dataset:
Systematic metabolic engineering of Zymomonas mobilis for β-farnesene production
Authors: Xiao Yubei , Tan Xuemei , He Qiaoning , Yang Shihui
Published: May 2024

Zymomonas mobilis is an ethanologenic bacterium that can produce hopanoids using farnesyl pyrophosphate (FPP), which can be used as the precursor by β-farnesene synthase for β-farnesene production. To explore the possibility and bottlenecks of developing Z. mobilis for β-farnesene production, five heterologous β-farnesene synthases were selected and screened, and AaBFS from Artemisia annua had the highest β-farnesene titer. Recombinant strains with AaBFS driven by the strong constitutive promoter Pgap (Pgap–AaBFS) doubled its β-farnesene production to 25.73 ± 0.31 mg/L compared to the recombinant strain with AaBFS driven by Ptet (Ptet–AaBFS), which can be further improved by overexpressing the Pgap–AaBFS construct using the strategies of multiple plasmids (41.00 ± 0.40 mg/L) or genomic multi-locus integration (48.33 ± 3.40 mg/L). The effect of cofactor NADPH balancing on β-farnesene production was also investigated, which can be improved only in zwf-overexpressing strains but not in ppnK-overexpressing strains, indicating that cofactor balancing is important and sophisticated. Furthermore, the β-farnesene titer was improved to 73.30 ± 0.71 mg/L by overexpressing dxs, ispG, and ispH. Finally, the β-farnesene production was increased to 159.70 ± 7.21 mg/L by fermentation optimization, including the C/N ratio, flask working volume, and medium/dodecane ratio, which was nearly 13-fold improved from the parental strain. This work thus not only generated a recombinant β-farnesene production Z. mobilis strain but also unraveled the bottlenecks to engineer Z. mobilis for farnesene production, which will help guide the future rational design and construction of cell factories for terpenoid production in non-model industrial microorganisms.
A review on transition metal oxides in catalysis
Authors: Sahoo Sanjubala , Wickramathilaka Kaveendra Y. , Njeri Elsa , Silva Dilshan , Suib Steven L.
Published: May 2024

Transition Metal Oxides (TMOs) have drawn significant attention due to their diverse range of properties and applications. The partially filled d orbitals of the transition metal ions, with highly electronegative oxygen atoms, give rise to unique electronic structures that lead to multiple applications due to their magnetic, optical, and structural properties. These properties have a direct influence on chemical reactions that enable tailoring materials for specific applications in catalysis, such as electrocatalysis and photocatalysis. While the potential of TMOs is promising, their development for enhanced functional properties poses numerous challenges. Among these challenges, identifying the appropriate synthesis processes and employing optimal characterization techniques are crucial. In this comprehensive review, an overview of recent trends and challenges in the synthesis and characterization of highly functional TMOs as well as ceramics will be covered with emphasis on catalytic applications. Mesoporous materials play a key role in augmenting their functionality for various applications and will be covered. Ab-initio modeling aspects for the design and development of novel TMO will be also discussed.
Characterizing carbapenemase-producing Escherichia coli isolates from Spain: high genetic heterogeneity and wide geographical spread
Authors: Dahdouh Elias , Gómez-Marcos Laro , Cañada-García Javier E. , de Arellano Eva Ramírez , Sánchez-García Aida , Sánchez-Romero Isabel , López-Urrutia Luis , de la Iglesia Pedro , Gonzalez-Praetorius Alejandro , Sotelo Jared , Valle-Millares Daniel , Alonso-González Isabela , Bautista Verónica , Lara Noelia , García-Cobos Silvia , Cercenado Emilia , Aracil Belén , Oteo-Iglesias Jesús , Pérez-Vázquez María ,   Spanish Eco-Carba Study Group
Published: May 2024

Introduction

Carbapenemase-Producing Escherichia coli (CP-Eco) isolates, though less prevalent than other CP-Enterobacterales, have the capacity to rapidly disseminate antibiotic resistance genes (ARGs) and cause serious difficult-to-treat infections. The aim of this study is phenotypically and genotypically characterizing CP-Eco isolates collected from Spain to better understand their resistance mechanisms and population structure.

Methods

Ninety representative isolates received from 2015 to 2020 from 25 provinces and 59 hospitals Spanish hospitals were included. Antibiotic susceptibility was determined according to EUCAST guidelines and whole-genome sequencing was performed. Antibiotic resistance and virulence-associated genes, phylogeny and population structure, and carbapenemase genes-carrying plasmids were analyzed.

Results and discussion

The 90 CP-Eco isolates were highly polyclonal, where the most prevalent was ST131, detected in 14 (15.6%) of the isolates. The carbapenemase genes detected were blaOXA-48 (45.6%), blaVIM-1 (23.3%), blaNDM-1 (7.8%), blaKPC-3 (6.7%), and blaNDM-5 (6.7%). Forty (44.4%) were resistant to 6 or more antibiotic groups and the most active antibiotics were colistin (98.9%), plazomicin (92.2%) and cefiderocol (92.2%). Four of the seven cefiderocol-resistant isolates belonged to ST167 and six harbored blaNDM. Five of the plazomicin-resistant isolates harbored rmt. IncL plasmids were the most frequent (45.7%) and eight of these harbored blaVIM-1. blaOXA-48 was found in IncF plasmids in eight isolates. Metallo-β-lactamases were more frequent in isolates with resistance to six or more antibiotic groups, with their genes often present on the same plasmid/integron. ST131 isolates were associated with sat and pap virulence genes. This study highlights the genetic versatility of CP-Eco and its potential to disseminate ARGs and cause community and nosocomial infections.
Case Report: Assessment of primary myxofibrosarcoma in the left atrium using multimodal ultrasonography
Authors: Hu Liyan , Wang Zhaohui , Chen Yu , Zhang Xiaowei
Published: May 2024

Primary myxofibrosarcoma of the heart, a rare cardiac malignancy, was diagnosed in a middle-aged female patient exhibiting progressive dyspnea following transthoracic echocardiography and pathological analysis. Postoperatively, the patient underwent chemotherapy and Lenvatinib mesylate therapy, with regular check-ups confirming her survival. After 10 months the patient is still alive and well.
Knowledge and attitude toward postoperative antithrombotic management and prevention in patients with coronary revascularization: a cross-sectional study
Authors: Liu Chunlu , Zhang Haijun , Yang Liming , Chen Lihua , Zu Changhao , Wang Fangfang , Dai Yunjia , Zhao Haiyan
Published: May 2024

Background

This study aimed to explore the knowledge and attitude (KA) toward postoperative antithrombotic management and prevention among coronary artery disease (CAD) patients who underwent coronary revascularization.

Methods

This cross-sectional study enrolled CAD outpatients and inpatients between May and December 2023 at Kailuan Medical Group at Tangshan. Basic demographic characteristics and KA scores were collected through a self-made questionnaire.

Results

This study included 523 valid questionnaires. The mean knowledge and attitude scores were 13.20 ± 6.20 (range: 0–26) and 43.68 ± 6.01 (range: 21–50), respectively, indicating poor knowledge and favorable attitude. Multivariable logistic regression analysis showed that junior high school education (OR = 2.160, P = 0.035), high school or technical school education (OR = 2.356, P = 0.039), and monthly average income >5,000 RMB (OR = 3.407, P = 0.002) were independently associated with knowledge. Knowledge (OR = 1.095, P = 0.002), BMI ≥ 24.0 kg/m2 (OR = 0.372, P = 0.011), junior high school (OR = 3.699, P = 0.002), high school or technical school (OR = 2.903, P = 0.028), high associate degree or above education (OR = 6.068, P = 0.014), monthly average income 3,000–5,000 RMB (OR = 0.296, P = 0.005), monthly average income > 5,000 RMB (OR = 0.225, P = 0.021), with hypertension (OR = 0.333, P = 0.003), blood tests every 2–3 weeks (OR = 10.811, P = 0.011), blood tests every month (OR = 4.221, P = 0.024), and blood tests every 2–3 months (OR = 3.342, P = 0.033) were independently associated with attitude.

Conclusion

CAD patients who underwent coronary revascularization had poor knowledge but favorable attitudes toward postoperative antithrombotic management and prevention. The study underscores the need for targeted education, especially for individuals with lower education and income levels, ultimately improving patient compliance and cardiovascular outcomes.
The exploitation of mountain natural resources during the Iron Age in the Eastern Pyrenees: the case study of production unit G at Tossal de Baltarga (Bellver de Cerdanya, Lleida, Spain)
Authors: Olesti Oriol , Morera Jordi , Oller Joan , Carrasco Jose M. , Colominas Lídia , Portillo Marta , Berrocal Anna , Lopez-Bultó Oriol , Obea Laura , Tarifa Nadia , Tárraga Paula , Sisa-López de Pablo Joaquim , Messana Chiara
Published: May 2024

The Iron Age site of Tossal de Baltarga (Bellver de Cerdanya) was a large Iberian residential complex occupying a strategic position in the middle of the Eastern Pyrenees. It was destroyed by fire in the second half of the 3rd century BCE, preserving an important volume of archaeological and bioarchaeological material in certain areas. This is the case of Building G, a two-story construction whose violent blaze has offered the possibility of analyzing a precise moment in the history of an Iron Age productive unit. The existence of a stable on the lower floor, where four sheep, a goat, and a horse were documented, and an upper floor, where textile production and storage were evidenced, allows us to analyse the complexity of the economic activities and exploitation of local resources, such as livestock, agriculture, forestry and mining.
Quantifiable impact: monitoring landscape restoration from space. A regreening case study in Tanzania
Authors: van der Vliet Mendy , Malbeteau Yoann , Ghent Darren , Haas Sander de , Veal Karen L. , van der Zaan Thijs , Sinha Rajiv , Dash Saroj K. , Houborg Rasmus , de Jeu Richard A. M.
Published: May 2024

The impact of ecosystem conservation and restoration activities are rarely monitored from a global, multidimensional and multivariable perspective. Here we present an approach to quantify the environmental impact of landscape restoration using long-term and high-resolution satellite observations. For two restoration areas in Tanzania, we can likely attribute an increase in the amount of water retained by the soil (∼0.01 m³ m⁻³, ∼13% average increase), a soil temperature drop (∼-0.5°C) and an increase in surface greenness (∼50% average increase) in 3.5 years. These datasets illuminate the impact of restoration initiatives on the landscape and support the reporting of comprehensive metrics to donors and partners. Satellite observations from commercial providers and space agencies are now achieving the frequency, resolution, and accuracy that can allow for the effective evaluation of restoration activities.
Case report: Clinical, imaging, and genetic characteristics of type B niemann pick disease combined with segawa syndrome diagnosed via dual gene sequencing
Authors: Wu Fang , Su Dongying , Wang Weisi , Song Xia , Fan Shufeng , Su Jinzhan , Ma Linying , Xu Jianxia , Rao Qinpan
Published: May 2024

Niemann Pick disease B (NPB) often presents with hepatosplenomegaly and lung pathological changes, but it usually does not present with central nervous system symptoms. This report presents the unique case of a 21-year-old woman with a 10-year history of hard skin and hepatosplenomegaly. Genetic sequencing revealed NPB and also suggested Segawa syndrome. Although symptomatic supportive treatments were administered in an attempt to improve muscle tone and treat the skin sclerosis, their efficacy was not satisfactory, and the patient refused further treatment. This case provides several noteworthy findings. First, although NPB and Segawa syndrome are rare, both are autosomal recessive inherited diseases that share common clinical symptoms and imaging manifestations. Second, when NPB and Segawa syndrome are highly suspected, screening for tyrosine hydroxylase (TH) and sphingomyelin phosphodiesterase-1 (SMPD1) gene mutations is critical to determine an accurate diagnosis. Finally, early diagnosis and comprehensive therapies are crucial for improving the prognosis of patients with NPB and Segawa syndrome.
Trellising is advantageous over ground culture for out-of-season, protected production and storage of sweet acorn squash
Authors: Adeeko Ayobami , Yudelevich Fabiola , Raphael Ginat , Avraham Lior , Alon Hana , Zaaroor Presman Merav , Alkalai-Tuvia Sharon , Fallik Elazar , Paris Harry S. , Ziv Carmit
Published: May 2024

Acorn squash (Cucurbita pepo) have been a familiar item at produce stands for decades in the United States and Canada, but little known or appreciated elsewhere. Following the breeding and development of sweet-fleshed acorn squash in Israel and its commercial introduction in 2007, acorn squash became a high-priced, popular produce item there. Scarcity of supply in winter has led to attempts to fill the consumer demand by using available protected cultivation infrastructure in the relatively mild area of southwestern Israel for production. Such production has proven feasible but it was not determined whether it would be preferable to allow the plants to simply grow sprawling on the ground or vertically, using trellises to train the plants to grow erect. Two sweet acorn squash hybrid cultivars differing in fruit size were compared, growing on the ground or on trellises, for yield, quality, and storability of the fruits. The hybrids bore fully ripe fruits from December through February, producing 56% higher yields when trellised rather than when allowed to grow on the ground. The fruits of trellised plants of both hybrids were more uniformly black-green and firmer than those of ground-grown plants. Their dry matter content at harvest and after 78 days of storage was very high, averaging 28% and 25%, respectively. Total soluble solids content of the fruit flesh from trellised plants was 19% at harvest and an extraordinary 20% after storage at 10°C, 70% RH. The fruit flesh of trellised plants was also more highly colored and had higher carotenoid, ascorbate, and anti-oxidant contents. Overall, trellising of sweet acorn squash during the winter under protected cultivation resulted in significantly higher yields and the finest fruit quality.
Single domain antibodies from camelids in the treatment of microbial infections
Authors: De Greve Henri , Fioravanti Antonella
Published: May 2024

Infectious diseases continue to pose significant global health challenges. In addition to the enduring burdens of ailments like malaria and HIV, the emergence of nosocomial outbreaks driven by antibiotic-resistant pathogens underscores the ongoing threats. Furthermore, recent infectious disease crises, exemplified by the Ebola and SARS-CoV-2 outbreaks, have intensified the pursuit of more effective and efficient diagnostic and therapeutic solutions. Among the promising options, antibodies have garnered significant attention due to their favorable structural characteristics and versatile applications. Notably, nanobodies (Nbs), the smallest functional single-domain antibodies of heavy-chain only antibodies produced by camelids, exhibit remarkable capabilities in stable antigen binding. They offer unique advantages such as ease of expression and modification and enhanced stability, as well as improved hydrophilicity compared to conventional antibody fragments (antigen-binding fragments (Fab) or single-chain variable fragments (scFv)) that can aggregate due to their low solubility. Nanobodies directly target antigen epitopes or can be engineered into multivalent Nbs and Nb-fusion proteins, expanding their therapeutic potential. This review is dedicated to charting the progress in Nb research, particularly those derived from camelids, and highlighting their diverse applications in treating infectious diseases, spanning both human and animal contexts.
IFNγ at the early stage induced after cryo-thermal therapy maintains CD4+ Th1-prone differentiation, leading to long-term antitumor immunity
Authors: Wang Junjun , Lou Yue , Wang Shicheng , Zhang Zelu , You Jiaqi , Zhu Yongxin , Yao Yichen , Hao Yuankai , Liu Ping , Xu Lisa X.
Published: May 2024

Introduction

Recently, more and more research illustrated the importance of inducing CD4+ T helper type (Th)-1 dominant immunity for the success of tumor immunotherapy. Our prior studies revealed the crucial role of CD4+ Th1 cells in orchestrating systemic and durable antitumor immunity, which contributes to the satisfactory outcomes of the novel cryo-thermal therapy in the B16F10 tumor model. However, the mechanism for maintaining the cryo-thermal therapy-mediated durable CD4+ Th1-dominant response remains uncovered. Additionally, cryo-thermal-induced early-stage CD4+ Th1-dominant T cell response showed a correlation with the favorable prognosis in patients with colorectal cancer liver metastasis (CRCLM). We hypothesized that CD4+ Th1-dominant differentiation induced during the early stage post cryo-thermal therapy would affect the balance of CD4+ subsets at the late phase.

Methods

To understand the role of interferon (IFN)-γ, the major effector of Th1 subsets, in maintaining long-term CD4+ Th1-prone polarization, B16F10 melanoma model was established in this study and a monoclonal antibody was used at the early stage post cryo-thermal therapy for interferon (IFN)-γ signaling blockade, and the influence on the phenotypic and functional change of immune cells was evaluated.

Results

IFNγ at the early stage after cryo-thermal therapy maintained long-lasting CD4+ Th1-prone immunity by directly controlling Th17, Tfh, and Tregs polarization, leading to the hyperactivation of Myeloid-derived suppressor cells (MDSCs) represented by abundant interleukin (IL)-1β generation, and thereby further amplifying Th1 response.

Discussion

Our finding emphasized the key role of early-phase IFNγ abundance post cryo-thermal therapy, which could be a biomarker for better prognosis after cryo-thermal therapy.
PD-1 inhibitor combined with paclitaxel and cisplatin in the treatment of recurrent and metastatic hypopharyngeal/laryngeal squamous cell carcinoma: efficacy and survival outcomes
Authors: Fang Qi , Li Xiaodi , Xu Pengfei , Cao Fei , Wu Di , Zhang Xinrui , Chen Chunyan , Gao Jianming , Su Yong , Liu Xuekui
Published: May 2024

Objective

This retrospective study analyzed the efficacy of PD-1 inhibitors combined with albumin-bound paclitaxel and cisplatin (TP regimen) in the treatment of recurrent and metastatic hypopharyngeal/laryngeal squamous cell carcinoma (RMHSCC/RMLSCC).

Methods

Patients diagnosed and treated at the Sun Yat-sen University Cancer Center from August 1, 2020, to August 15, 2023, with histologically confirmed RMHSCC/RMLSCC were included. All patients received PD-1 inhibitors combined with albumin-bound paclitaxel (260mg/m2) and cisplatin (60mg/m2) for 3–4 cycles. The primary endpoints were overall survival (OS) and progression-free survival (PFS).

Results

A total of 50 patients with RMHSCC/RMLSCC who received TP+PD-1 inhibitor therapy were included, with an objective response rate (ORR) of 56.0% (28/50). The 1-year and 2-year OS rates were 80.2% (95% CI: 69.3%-92.9%) and 68.6% (95% CI: 52.6%-89.5%), respectively, while the 1-year and 2-year PFS rates were 44.7% (95% CI: 31.9%-62.5%) and 26.0% (95% CI: 12.6%-53.4%), respectively. Treatment-related adverse events mainly included rash, myelosuppression, gastrointestinal reactions, and hypothyroidism.

Conclusion

In the treatment of RMHSCC/RMLSCC with TP + PD-1 inhibitors, survival rates of patients can be improved while ensuring the safety of the treatment regimen.
Mincle receptor in macrophage and neutrophil contributes to the unresolved inflammation during the transition from acute kidney injury to chronic kidney disease
Authors: Wang Cui , Zhang Yilin , Shen Anran , Tang Taotao , Li Ning , Xu Chuanhui , Liu Bicheng , Lv Linli
Published: May 2024

Background

Recent studies have demonstrated a strong association between acute kidney injury (AKI) and chronic kidney disease (CKD), while the unresolved inflammation is believed to be a driving force for this chronic transition process. As a transmembrane pattern recognition receptor, Mincle (macrophage-inducible C-type lectin, Clec4e) was identified to participate in the early immune response after AKI. However, the impact of Mincle on the chronic transition of AKI remains largely unclear.

Methods

We performed single-cell RNA sequencing (scRNA-seq) with the unilateral ischemia-reperfusion (UIR) murine model of AKI at days 1, 3, 14 and 28 after injury. Potential effects and mechanism of Mincle on renal inflammation and fibrosis were further validated in vivo utilizing Mincle knockout mice.

Results

The dynamic expression of Mincle in macrophages and neutrophils throughout the transition from AKI to CKD was observed. For both cell types, Mincle expression was significantly up-regulated on day 1 following AKI, with a second rise observed on day 14. Notably, we identified distinct subclusters of Minclehigh neutrophils and Minclehigh macrophages that exhibited time-dependent influx with dual peaks characterized with remarkable pro-inflammatory and pro-fibrotic functions. Moreover, we identified that Minclehigh neutrophils represented an “aged” mature neutrophil subset derived from the “fresh” mature neutrophil cluster in kidney. Additionally, we observed a synergistic mechanism whereby Mincle-expressing macrophages and neutrophils sustained renal inflammation by tumor necrosis factor (TNF) production. Mincle-deficient mice exhibited reduced renal injury and fibrosis following AKI.

Conclusion

The present findings have unveiled combined persistence of Minclehigh neutrophils and macrophages during AKI-to-CKD transition, contributing to unresolved inflammation followed by fibrosis via TNF-α as a central pro-inflammatory cytokine. Targeting Mincle may offer a novel therapeutic strategy for preventing the transition from AKI to CKD.
Impact of assimilation of absolute dynamic topography on Arctic Ocean circulation
Authors: Smith Gregory C. , Hébert-Pinard Charlie , Gauthier Audrey-Anne , Roy François , Peterson Kenneth Andrew , Veillard Pierre , Faugère Yannice , Mulet Sandrine , Morales Maqueda Miguel
Published: May 2024

The ocean circulation is typically constrained in operational analysis and forecasting systems through the assimilation of sea level anomaly (SLA) retrievals from satellite altimetry. This approach has limited benefits in the Arctic Ocean and surrounding seas due to data gaps caused by sea ice coverage. Moreover, assimilation of SLA in seasonally ice-free regions may be negatively affected by the quality of the Mean Sea Surface (MSS) used to derive the SLA. Here, we use the Regional Ice Ocean Prediction System (RIOPS) to investigate the impact of assimilating Absolute Dynamic Topography (ADT) fields on the circulation in the Arctic Ocean. This approach avoids the use of a MSS and additionally provides information on sea level in ice covered regions using measurements across leads (openings) in the sea ice. RIOPS uses a coupled ice-ocean model on a 3-4 km grid-resolution pan-Arctic domain together with a multi-variate reduced-order Kalman Filter. The system assimilates satellite altimetry and sea surface temperature together with in situ profile observations. The background error is modified to match the spectral characteristics of the ADT fields, which contain less energy at small scales than traditional SLA due to filtering applied to reduce noise originating in the geoid product used. A series of four-year reanalyses demonstrate significant reductions in innovation statistics with important impacts across the Arctic Ocean. Results suggest that the assimilation of ADT can improve circulation and sea ice drift in the Arctic Ocean, and intensify volume transports through key Arctic gateways and resulting exchanges with the Atlantic Ocean. A reanalysis with a modified Mean Dynamic Topography (MDT) is able to reproduce many of the benefits of the ADT but does not capture the enhanced transports. Assimilation of SLA observations from leads in the sea ice appears to degrade several circulation features; however, these results may be sensitive to errors in MDT. This study highlights the large uncertainties that exist in present operational ocean forecasting systems for the Arctic Ocean due to the relative paucity and reduced quality of observations compared to ice-free areas of the Global Ocean. Moreover, this underscores the need for dedicated and focused efforts to address this critical gap in the Global Ocean Observing System.
Environmental adaptation, growth performance and nutrient content of the clam Cyclina sinensis from different geographic locations
Authors: Yan Shiyu , Xia Qing , Cui Zhenquan , Ren Guoliang , Li Xiaoying , Ge Hongxing , Liu Meimei , Dong Zhiguo
Published: May 2024

The clam Cyclina sinensis is an economically important marine species in China. However, overfishing, habitat destruction, and inbreeding have led to the destruction of genetic resources. In this study, five natural populations [Dandong (DD), Dongying (DY), Tianjin (TJ), Wenzhou (WZ), and Yancheng (YC)] from different geographical locations were relocated and cultured homogeneously to study their potential for translocation and environmental adaptation by observing growth performance and nutrient content. There were significant differences in the growth rates of shell length (SL), shell height (SH), and shell width (SW) among the five populations (P<0.05). The DD, TJ, and YC populations exhibited the highest SL and SH growth rates, whereas these were lowest in the WZ population. The survival rate was highest in the YC population and lowest in the WZ population, which was significantly lower than the other four populations (P<0.05). The DD population exhibited superior plumpness and glycogen content, and the overall glycogen content in male C. sinensis was higher compared with that in females (P<0.05). All populations displayed a high total amino acid content and the essential amino acid/Total Amino Acid (EAA/TAA) and Non-essential amino acid/Total Amino Acid (NEAA/TAA) ratios in the soft tissue of all five populations aligned with the FAO/WHO ideal protein evaluation standards. Despite the same aquaculture environment, however, the nutrient composition of C. sinensis sampled from different populations varied significantly (P<0.05).Therefore, ex situ conservation did not eliminate nutritional differences between the different populations of C. sinensis. These findings highlight the importance of considering environmental and ecological factors in the nutritional assessment and cultivation of shellfish. In addition, C. sinensis from sampling sites closer to the transplantation sites had higher survival rates and growth rates, and the gonadal development of all populations showed adaption to the local environment, resulting in synchronization of the reproductive period.
Preparation of geopolymer for in-situ pavement construction on the moon utilizing minimal additives and human urine in lunar regolith simulant
Authors: Chen Lichong , Wang Tao , Li Feng , Zhou Siqi
Published: May 2024

Constructing lunar pavements is of great significance for improving the transportation efficiency of materials and personnel transfer at lunar bases. Utilizing lunar regolith for the in-situ preparation of geopolymer is an effective means of supplying raw materials for lunar pavement construction. This present study prepared geopolymers for pavement material with lunar regolith simulant. The influence of NaOH on the compressive strength of geopolymers was understood by using different percentages of NaOH as alkaline activator. The effect of urine on the compressive strength of geopolymers by using artificial urine of different pH values as liquid phases. The results indicated that the addition of artificial urine slightly reduces the compressive strength of geopolymers, and the effects of pH and NaOH percentage are different. Microstructural analysis performed by Mercury Intrusion Porosimetry and Scanning Electron Microscope, indicated that choosing fine-particle lunar regolith simulant as precursor is more conducive to the preparation of high-strength geopolymers using human urine.
Exploring the gut microbiota-hippocampus-metabolites axis dysregulation in sepsis mice
Authors: Song Fangqiang , Li Qinglun , Cui Jiyao , Wang Jianhua , Xiao Shuai , Yu Bo , Sun Yanqi , Song Wenke , Wu Linlin , Zhou Yongqin
Published: May 2024

Background

Sepsis is commonly associated with a sudden impairment of brain function, thus leading to significant rates of illness and mortality. The objective of this research was to integrate microbiome and metabolome to reveal the mechanism of microbiota-hippocampus-metabolites axis dysfunction in a mouse model of sepsis.

Methods

A mouse model of sepsis was established via cecal ligation and puncture. The potential associations between the composition of the gut microbiota and metabolites in the hippocampus of mice with sepsis were investigated by combining 16S ribosomal RNA gene sequencing and ultra-high-performance liquid chromatography tandem mass spectrometry.

Results

A total of 140 differential metabolites were identified in the hippocampal tissues of mice with sepsis when compared to those of control mice. These differential metabolites in mice with sepsis were not only associated with autophagy and serotonergic synapse, but also involved in the metabolism and synthesis of numerous amino acids. At the phylum level, the abundance of Bacteroidota was increased, while that of Firmicutes (Bacillota) was decreased in mice with sepsis. At the genus level, the abundance of Alistipes was increased, while that of Lachnospiraceae_NK4A136_group was decreased in mice with sepsis. The Firmicutes (Bacillota)/Bacteroidota (F/B) ratio was decreased in mice with sepsis when compared to that of control mice. Furthermore, the F/B ratio was positively correlated with 5′-methylthioadenosine, PC (18:3(9Z,12Z,15Z)/18:0) and curdione, and negatively correlated with indoxylsulfuric acid, corticosterone, kynurenine and ornithine.

Conclusion

Analysis revealed a reduction in the F/B ratio in mice with sepsis, thus contributing to the disturbance of 5′-methylthioadenosine, curdione, PC (18:3(9Z,12Z,15Z)/18:0), corticosterone, ornithine, indoxylsulfuric acid and kynurenine; eventually, these changes led to hippocampus dysfunction. Our findings provide a new direction for the management of sepsis-induced hippocampus dysfunction.
Acidophilic heterotrophs: basic aspects and technological applications
Authors: González Ernesto , Vera Fernando , Scott Felipe , Guerrero Cecilia , Bolívar Juan M. , Aroca Germán , Muñoz Jesús Ángel , Ladero Miguel , Santos Victoria E.
Published: May 2024

Acidophiles comprise a group of microorganisms adapted to live in acidic environments. Despite acidophiles are usually associated with an autotrophic metabolism, more than 80 microorganisms capable of utilizing organic matter have been isolated from natural and man-made environments. The ability to reduce soluble and insoluble iron compounds has been described for many of these species and may be harnessed to develop new or improved mining processes when oxidative bioleaching is ineffective. Similarly, as these microorganisms grow in highly acidic media and the chances of contamination are reduced by the low pH, they may be employed to implement robust fermentation processes. By conducting an extensive literature review, this work presents an updated view of basic aspects and technological applications in biomining, bioremediation, fermentation processes aimed at biopolymers production, microbial electrochemical systems, and the potential use of extremozymes.
Genetic diversity, evolution and drug resistance of Mycobacterium tuberculosis lineage 2
Authors: Atavliyeva Sabina , Auganova Dana , Tarlykov Pavel
Published: May 2024

Mycobacterium tuberculosis causes a chronic infectious disease called tuberculosis. Phylogenetic lineage 2 (L2) of M. tuberculosis, also known as the East Asian lineage, is associated with high virulence, increased transmissibility, and the spread of multidrug-resistant strains. This review article examines the genomic characteristics of the M. tuberculosis genome and M. tuberculosis lineage 2, such as the unique insertion sequence and spoligotype patterns, as well as MIRU-VNTR typing, and SNP-based barcoding. The review describes the geographical distribution of lineage 2 and its history of origin. In addition, the article discusses recent studies on drug resistance and compensatory mechanisms of M. tuberculosis lineage 2 and its impact on the pathogen’s transmissibility and virulence. This review article discusses the importance of establishing a unified classification for lineage 2 to ensure consistency in terminology and criteria across different studies and settings.
A membrane-targeting magnolol derivative for the treatment of methicillin-resistant Staphylococcus aureus infections
Authors: Zhang Fushan , Fang Hui , Zhao Yuxin , Zhao Buhui , Qin Shangshang , Wang Yu , Guo Yong , Liu Jifeng , Xu Ting
Published: May 2024

Multidrug-resistant bacterial infections are a major global health challenge, especially the emergence and rapid spread of methicillin-resistant Staphylococcus aureus (MRSA) urgently require alternative treatment options. Our study has identified that a magnolol derivative 6i as a promising agent with significant antibacterial activity against S. aureus and clinical MRSA isolates (MIC = 2–8 μg/mL), showing high membrane selectivity. Unlike traditional antibiotics, 6i demonstrated rapid bactericidal efficiency and a lower propensity for inducing bacterial resistance. Compound 6i also could inhibit biofilm formation and eradicate bacteria within biofilms. Mechanistic studies further revealed that 6i could target bacterial cell membranes, disrupting the integrity of the cell membrane and leading to increased DNA leakage, resulting in potent antibacterial effects. Meanwhile, 6i also showed good plasma stability and excellent biosafety. Notably, 6i displayed good in vivo antibacterial activity in a mouse skin abscess model of MRSA-16 infection, which was comparable to the positive control vancomycin. These findings indicated that the magnolol derivative 6i possessed the potential to be a novel anti-MRSA infection agent.
The ncRNA-mediated regulatory networks of defensins and lysozymes in Riptortus pedestris: involvement in response to gut bacterial disturbances
Authors: Ren Yipeng , Fu Siying , Dong Wenhao , Chen Juhong , Xue Huaijun , Bu Wenjun
Published: May 2024

Insects depend on humoral immunity against intruders through the secretion of antimicrobial peptides (AMPs) and immune effectors via NF-κB transcription factors, and their fitness is improved by gut bacterial microbiota. Although there are growing numbers of reports on noncoding RNAs (ncRNAs) involving in immune responses against pathogens, comprehensive studies of ncRNA-AMP regulatory networks in Riptortus pedestris, which is one of the widely distributed pests in East Asia, are still not well understood under feeding environmental changes. The objective of this study employed the whole-transcriptome sequencing (WTS) to systematically identify the lncRNAs (long noncoding RNA) and circRNAs (circular RNA) and to obtain their differential expression from the R. pedestris gut under different feeding conditions. Functional annotation indicated that they were mainly enriched in various biological processes with the GO and KEGG databases, especially in immune signaling pathways. Five defensin (four novel members) and eleven lysozyme (nine novel members) family genes were identified and characterized from WTS data, and meanwhile, phylogenetic analysis confirmed their classification. Subsequently, the miRNA–mRNA interaction network of above two AMPs and lncRNA-involved ceRNA (competing endogenous RNA) regulatory network of one lysozyme were predicted and built based on bioinformatic prediction and calculation, and the expression patterns of differentially expressed (DE) defensins, and DE lysozymes and related DE ncRNAs were estimated and selected among all the comparison groups. Finally, to integrate the analyses of WTS and previous 16S rRNA amplicon sequencing, we conducted the Pearson correlation analysis to reveal the significantly positive or negative correlation between above DE AMPs and ncRNAs, as well as most changes in the gut bacterial microbiota at the genus level of R. pedestris. Taken together, the present observations provide great insights into the ncRNA regulatory networks of AMPs in response to rearing environmental changes in insects and uncover new potential strategies for pest control in the future.
External quality assessment schemes in bacteriology support public health in Germany—results from 2006 to 2023
Authors: Lindenberg Marc , Waldmann Sabine , Suerbaum Sebastian , Schlüter Dirk , Ziesing Stefan
Published: May 2024

External Quality Assessment schemes (EQAS) are mandatory to ensure quality standards in diagnostic methods and achieve laboratory accreditation. As host institution for two German culture-based bacteriology EQAS (RV-A and RV-B), we investigated the obtained data of 590 up to 720 surveys per year in RV-A and 2,151 up to 2,929 in RV-B from 2006 to 2023. As educational instruments, they function to review applied methodology and are valuable to check for systemic- or method-dependent failures in microbiology diagnostics or guidelines. Especially, containment of multi-resistant bacteria in times of rising antibiotic resistance is one major point to assure public health. The correct identification and reporting of these strains is therefore of high importance to achieve this goal. Moreover, correct antimicrobial susceptibility testing (AST) per se is important for selecting appropriate therapy, to restrict broad-spectrum antibiotics and minimize resistance development. The reports of participating laboratories displayed a high level of correct identification results in both schemes with mostly consistent failure rates around 2.2% (RV-A) and 3.9% (RV-B) on average. In contrast, results in AST revealed increasing failure rates upon modification of AST requirements concerning adherence to standards and subsequent bacterial species-specific evaluation. Stratification on these periods revealed in RV-A a moderate increase from 1.3% to 4.5%, while in RV-B failure rates reached 14% coming from 4.3% on average. Although not mandatory, subsequent AST evaluation and consistent reporting are areas of improvement to benefit public health.
A kinetic Monte Carlo approach for Boolean logic functionality in gold nanoparticle networks
Authors: Mensing Jonas , van der Wiel Wilfred G. , Heuer Andreas
Published: May 2024

Nanoparticles interconnected by insulating organic molecules exhibit nonlinear switching behavior at low temperatures. By assembling these switches into a network and manipulating charge transport dynamics through surrounding electrodes, the network can be reconfigurably functionalized to act as any Boolean logic gate. This work introduces a kinetic Monte Carlo-based simulation tool, applying established principles of single electronics to model charge transport dynamics in nanoparticle networks. We functionalize nanoparticle networks as Boolean logic gates and assess their quality using a fitness function. Based on the definition of fitness, we derive new metrics to quantify essential nonlinear properties of the network, including negative differential resistance and nonlinear separability. These nonlinear properties are crucial not only for functionalizing the network as Boolean logic gates but also when our networks are functionalized for brain-inspired computing applications in the future. We address fundamental questions about the dependence of fitness and nonlinear properties on system size, number of surrounding electrodes, and electrode positioning. We assert the overall benefit of having more electrodes, with proximity to the network’s output being pivotal for functionality and nonlinearity. Additionally, we demonstrate an optimal system size and argue for breaking symmetry in electrode positioning to favor nonlinear properties.
Relationship between Contingent Negative Variation and afterimage duration in migraine patients
Authors: Giesen Simeon , Rimmele Florian , Jürgens Tim P. , Scheidt Jörg , Drescher Johannes , Leonhardt Ann-Kristin , Schulze Sophia , Harbeck Birgit , Meyer Wolfgang , Müller Britta , Kropp Peter , Keller Armin
Published: May 2024

Background

Abnormalities in electrocortical parameters and persistence of afterimage after visual stimulation are known to occur in migraine patients. The results of studies on Contingent Negative Variation (CNV) and afterimage persistence in migraine patients suggest a link between these two phenomena and a connection to the pathomechanism of migraine.

Objectives

To date, no studies have investigated both afterimage duration and CNV parameters in the same subjects. The aim of this study was to investigate the relationship between the early component of CNV (iCNV) and the duration of the afterimage in migraine patients.

Methods

Sixty seven migraine patients from the headache center of the University of Rostock Medical Center were examined for iCNV amplitude, iCNV habituation and afterimage duration. The subjects also completed questionnaires developed for this study and the MIDAS (Migraine Disability Assessment) questionnaire.

Results

Associations were found between iCNV amplitude and afterimage duration and between habituation capacity and afterimage duration. A deficit in habituation capacity correlated with a significantly prolonged afterimage duration. Increased iCNV amplitude and prolonged afterimage duration were also significantly correlated.

Conclusion

Conclusions about the pathophysiology of migraine can be drawn from the results of this study. The results support the hypothesis of cortical hyperexcitability as a consequence of a low pre-activation level, which may be a possible contributory cause of migraine. Furthermore, they allow assessment of whether the afterimage examination, which is easier and quicker to perform than the CNV examination, can be used as a diagnostic tool or as a parameter to monitor the course of therapy in people with migraine.
Ahnak in the prefrontal cortex mediates behavioral correlates of stress resilience and rapid antidepressant action in mice
Authors: Bhatti Dionnet L. , Jin Junghee , Cheng Jia , McCabe Kathryn , Lee Ko-Woon , Berdasco Clara , Jeong Yu Young , Sinha Subhash C. , Kim Yong
Published: May 2024

The prefrontal cortex (PFC) is a key neural node mediating behavioral responses to stress and the actions of ketamine, a fast-acting antidepressant. The molecular mechanisms underlying these processes, however, are not fully understood. Our recent study revealed a pivotal role of hippocampal Ahnak as a regulator of cellular and behavioral adaptations to chronic stress. However, despite its significant expression in the PFC, the contribution of cortical Ahnak to behavioral responses to stress and antidepressants remains unknown. Here, using a mouse model for chronic social stress, we find that Ahnak expression in the PFC is significantly increased in stress-resilient mice and positively correlated with social interaction after stress exposure. Conditional deletion of Ahnak in the PFC or forebrain glutamatergic neurons facilitates stress susceptibility, suggesting that Ahnak is required for behavioral resilience. Further supporting this notion, Ahnak expression in the PFC is increased after the administration of ketamine or its metabolite (2R, 6R)-hydroxynorketamine (HNK). Moreover, Ahnak deletion in forebrain glutamatergic neurons blocks the restorative behavioral effects of ketamine or HNK in stress-susceptible mice. This forebrain excitatory neuron-specific Ahnak deletion reduces the frequency of mini excitatory postsynaptic currents in layer II/III pyramidal neurons, suggesting that Ahnak may induce its behavioral effects via modulation of glutamatergic transmission in the PFC. Altogether, these data suggest that Ahnak in glutamatergic PFC neurons may be critical for behavioral resilience and antidepressant actions of ketamine or HNK in chronic social stress-exposed mice.
“I could not find the strength to resist the pressure of the medical staff, to refuse to give commercial milk formula”: a qualitative study on effects of the war on Ukrainian women’s infant feeding
Authors: Iellamo Alessandro , Wong Christina Misa , Bilukha Oleg , Smith Julie P. , Ververs Mija , Gribble Karleen , Walczak Bartłomiej , Wesolowska Aleksandra , Al Samman Sura , O’Brien Michael , Brown Annette N. , Stillman Tobias , Thomas Blythe
Published: May 2024

Introduction

During emergencies, breastfeeding protects infants by providing essential nutrients, food security, comfort, and protection and is a priority lifesaving intervention. On February 24, 2022, the war in Ukraine escalated, creating a humanitarian catastrophe. The war has resulted in death, injuries, and mass internal displacement of over 5 million people. A further 8.2 million people have taken refuge in neighboring countries, including Poland. Among those impacted are infants and young children and their mothers. We conducted a study to explore the infant feeding challenges and needs of Ukrainian women affected by the war.

Methods

We conducted a qualitative descriptive study involving in-depth interviews (IDIs) with 75 war-affected Ukrainian mothers who had at least one infant aged less than 12 months at the time of the interview. Eligible mothers were either (1) living as Ukrainian refugees in Poland, having crossed the border from Ukraine on or after February 24, 2022, when the war started (n = 30) or (2) living in Ukraine as internally displaced persons or as residents in the community (n = 45). All interviews were audio-recorded (either transcribed or had responses summarized as expanded notes) and analyzed using qualitative thematic analysis using a two-step rapid analysis process.

Results

Participants in Ukraine who wanted to initiate breastfeeding right after birth faced opposition from healthcare workers at maternity hospitals. Ukrainian refugees who gave birth in Poland faced language barriers when seeking breastfeeding support. Half of the participants in Ukraine received commercial milk formula (CMF) donations even if they said they did not need them. Most respondents stated that breastfeeding information and support were urgently needed.

Conclusion

Our data suggests that healthcare workers in Ukrainian maternity hospitals require additional training and motivation on delivering breastfeeding support. In addition, lactation consultants in maternity ward are needed in Ukraine, and interpretation support is needed for refugees to overcome language barriers. There is a need to control the indiscriminate donations of commercial milk formula and to ensure that complementary foods and commercial milk formula are available to those that need it. This study confirms the need for actions to ensure infant and young child feeding (IYCF) support is provided during emergencies.