bluuebunny/crossref_metadata_2025 huggingface dataset:
Deploying Machine Learning Models Using Progressive Web Applications: Implementation Using a Neural Network Prediction Model for Pneumonia Related Child Mortality in The Gambia
Authors: Mohammed Nuredin I. , Jarde Alexander , Mackenzie Grant , D'Alessandro Umberto , Jeffries David
Published: February 2022

Background

Translating research outputs into practical tools for medical practitioners is a neglected area and could have a substantial impact. One of the barriers to implementing artificial intelligence (AI) and machine learning (ML) applications is their practical deployment in the field. Traditional web-based (i.e., server sided) applications are dependent on reliable internet connections, which may not be readily available in rural areas. Native mobile apps require device specific programming skills as well as contemporary hardware and software, with often rapid and unpredictable platform specific changes. This is a major challenge for using AI/ML tools in resource-limited settings.

Methods

An emerging technology, progressive web applications (PWAs), first introduced by Google in 2015, offers an opportunity to overcome the challenges of deploying bespoke AI/ML systems. The same PWA code can be implemented across all desktop platforms, iOS and Android phones and tablets. In addition to platform independence, a PWA can be designed to be primarily offline.

Results

We demonstrate how a neural network-based pneumonia mortality prediction triage tool was migrated from a typical academic framework (paper and web-based prototype) to a tool that can be used offline on any mobile phone—the most convenient deployment vehicle. After an initial online connection to download the software, the application runs entirely offline, reading data from cached memory, and running code via JavaScript. On mobile devices the application is installed as a native app, without the inconvenience of platform specific code through manufacturer code stores.

Discussion

We show that an ML application can be deployed as a platform independent offline PWA using a pneumonia-related child mortality prediction tool as an example. The aim of this tool was to assist clinical staff in triaging children for hospital admission, by predicting their risk of death. PWAs function seamlessly when their host devices lose internet connectivity, making them ideal for e-health apps that can help improve health and save lives in resource-limited settings in line with the UN Sustainable Development Goal 3 (SDG3).
An Evolution-Based Model of Causation for Aging-Related Diseases and Intrinsic Mortality: Explanatory Properties and Implications for Healthy Aging
Authors: Levy Gilberto , Levin Bruce
Published: February 2022

Aging-related diseases are the most prevalent diseases in advanced countries nowadays, accounting for a substantial proportion of mortality. We describe the explanatory properties of an evolution-based model of causation (EBMC) applicable to aging-related diseases and intrinsic mortality. The EBMC takes the sufficient and component causes model of causation as a starting point and develops it using evolutionary and statistical theories. Genetic component causes are classified as “early-onset” or “late-onset” and environmental component causes as “evolutionarily conserved” or “evolutionarily recent.” Genetic and environmental component causes are considered to occur as random events following time-to-event distributions, and sufficient causes are classified according to whether or not their time-to-event distributions are “molded” by the declining force of natural selection with increasing age. We obtain for each of these two groups different time-to-event distributions for disease incidence or intrinsic mortality asymptotically (i.e., for a large number of sufficient causes). The EBMC provides explanations for observations about aging-related diseases concerning the penetrance of genetic risk variants, the age of onset of monogenic vs. sporadic forms, the meaning of “age as a risk factor,” the relation between frequency and age of onset, and the emergence of diseases associated with the modern Western lifestyle. The EBMC also provides an explanation of the Gompertz mortality model at the fundamental level of genetic causes and involving evolutionary biology. Implications for healthy aging are examined under the scenarios of health promotion and postponed aging. Most importantly from a public health standpoint, the EBMC implies that primary prevention through changes in lifestyle and reduction of environmental exposures is paramount in promoting healthy aging.
Relationship Between Accelerometer-Based Physical Activity, Sedentary Behavior, and Mental Health in Young Finnish Men
Authors: Appelqvist-Schmidlechner Kaija , Raitanen Jani , Vasankari Tommi , Kyröläinen Heikki , Häkkinen Arja , Honkanen Tuomas , Vaara Jani P.
Published: February 2022

Healthy lifestyle behaviors including physical activity (PA) have been recognized to contribute positively to mental health. Most of the evidence on relationship between PA and mental health relies on self-reported PA results. Device-based measures on PA or sedentary behavior (SB) are less frequently used in mental health research. The present study aimed at examining the relationship between mental health and PA/SB measured by accelerometers in young Finnish men. The sample consisted of 409 men (mean age 28 ± 7 years), who participated in the military refresher training in Finland. Self-rated mental health was measured with Mental Health Inventory (MHI-5) and short Warwick-Edinburgh Mental Well-being Scale (SWEMWBS) measuring mental health both from the perspective of mental health problems and mental well-being. PA was measured with accelerometer from the perspective of light, moderate, vigorous, and total activity, as well as SB. Linear regression models and compositional analysis were applied. Age, education, marital status, employment status, BMI, alcohol use and smoking were used as covariates. Evidence on relationship between total PA (standardized regression coefficient 0.340; 95% CI 0.022–0.657, p = 0.036) and SB (standardized regression coefficient −0.340; 95% CI −0.657 to −0.022, p = 0.036) with symptoms of mental health problems was found after adjusting for age, education, marital and employment status. The relationship was marginally significant (p = 0.056) after adjusting also for BMI, alcohol use and smoking. No evidence on relationship between PA or SB and mental well-being was found, neither in standard linear regression analysis nor in compositional approach. In our sample of young adult men, PA seemed to have a stronger relationship with symptoms of mental health problems rather than with mental well-being. The findings lead to a conclusion that all PA per se may not be independently associated with mental well-being in young adult males and raise the question whether the domain of PA and its context play a critical role in these relationships.
Determinants of Satisfaction With Hospital Online Appointment Service Among Older Adults During the COVID-19 Pandemic: A Cross-Sectional Study
Authors: Li Wenjia , Shen Shengwei , Yang Jidong , Guo Jingyu , Tang Qinghe
Published: February 2022

Background

How did older adults who had to use online medical service during the COVID-19 pandemic bridge the “digital divide”? Taking Internet-based appointment service (IBAS) as an example, this study aimed to investigate the subjective feelings of older adults and evaluate their user-satisfaction.

Methods

This study was based on data from a questionnaire survey involving 325 outpatients 60 years old in shanghai during the COVID-19 pandemic. The satisfaction of IBAS was evaluated and compared from six domains including convenience, visiting time, correct identification of specialists, on-site assist service, COVID-19 prevention, and privacy protection. Logistic regression analysis was used to investigate the correlation between satisfaction and social factors.

Results

No significant difference between older adults with or without previous experience using IBAS in terms of overall satisfaction. In the domain of operation difficulty (81.9 vs. 97.5%) and precise medicine (88.1 vs. 96.9%), such as correctly identifying the specialist, the satisfaction of previous user group was significantly higher than that of first-time user group. However, there was no significant difference in the remaining four domains between the two groups. Among the first time IBAS users, the satisfaction was higher than the walk-in registration they used before. Logistic regression revealed that some “intention to use IBAS”-associated social factors such as distance from the hospital, living status, and frequency of hospital visit, were related to the satisfaction of older adults.

Conclusions

Driven by the external pandemic and internal intention, older adults would choose and manage network medical resources with their high satisfaction, which essentially demonstrates not only behavioral adjustment but also inner acceptance in older adults. Our findings support the need for promoting the driving force of older adults in using Internet-based medical service as well as transforming the design factors and behavior patterns.
An Augmented Multiple Imputation Particle Filter for River State Estimation With Missing Observation
Authors: Ismail Z. H. , Jalaludin N. A.
Published: February 2022

In this article, a new form of data assimilation (DA) method namely multiple imputation particle filter with smooth variable structure filter (MIPF–SVSF) is proposed for river state estimation. This method is introduced to perform estimation during missing observation by presenting new sets of data. The contribution of this work is to overcome the missing observation, and at the same time improve the estimation performance. The convergence analysis of the MIPF–SVF is discussed and shows that the method depends on the number of particles and imputations. However, the number of particles and imputations is influenced by the error difference in the likelihood function. By bounding the error, the ability of the method can be improved and the number of particles and computational time are reduced. The comparison between the proposed method with EKF during complete data and multiple imputation particle filter shows the effectiveness of the MIPF–SVSF. The percentage improvement of the proposed method compared to MIPF in terms of root mean square error is between 12 and 13.5%, standard deviation is between 14 and 15%, mean absolute error is between 2 and 7%, and the computational error is reduced between 73 and 90% of the length of time required to perform the estimation process.
Magnetic-Field-Inspired Navigation for Robots in Complex and Unknown Environments
Authors: Ataka Ahmad , Lam Hak-Keung , Althoefer Kaspar
Published: February 2022

Over the course of the past decade, we have witnessed a huge expansion in robotic applications, most notably from well-defined industrial environments into considerably more complex environments. The obstacles that these environments often contain present robotics with a new challenge - to equip robots with a real-time capability of avoiding them. In this paper, we propose a magnetic-field-inspired navigation method that significantly has several advantages over alternative systems. Most importantly, 1) it guarantees obstacle avoidance for both convex and non-convex obstacles, 2) goal convergence is still guaranteed for point-like robots in environments with convex obstacles and non-maze concave obstacles, 3) no prior knowledge of the environment, such as the position and geometry of the obstacles, is needed, 4) it only requires temporally and spatially local environmental sensor information, and 5) it can be implemented on a wide range of robotic platforms in both 2D and 3D environments. The proposed navigation algorithm is validated in simulation scenarios as well as through experimentation. The results demonstrate that robotic platforms, ranging from planar point-like robots to robot arm structures such as the Baxter robot, can successfully navigate toward desired targets within an obstacle-laden environment.
Effects of Smart Traffic Signal Control on Air Quality
Authors: Fazzini Paolo , Torre Marco , Rizza Valeria , Petracchini Francesco
Published: February 2022

Adaptive traffic signal control (ATSC) in urban traffic networks poses a challenging task due to the complicated dynamics arising in traffic systems. In recent years, several approaches based on multi-agent deep reinforcement learning (MARL) have been studied experimentally. These approaches propose distributed techniques in which each signalized intersection is seen as an agent in a stochastic game whose purpose is to optimize the flow of vehicles in its vicinity. In this setting, the systems evolves toward an equilibrium among the agents that shows beneficial for the whole traffic network. A recently developed multi-agent variant of the well-established advantage actor-critic (A2C) algorithm, called MA2C (multi-agent A2C) exploits the promising idea of some communication among the agents. In this view, the agents share their strategies with other neighbor agents, thereby stabilizing the learning process even when the agents grow in number and variety. We experimented MA2C in two traffic networks located in Bologna (Italy) and found that its action translates into a significant decrease of the amount of pollutants released into the environment.
Ureteroscopy Is Equally Efficient and Safe in Obese and Morbidly Obese Patients: A Systematic Review and Meta-Analysis
Authors: Wang Wei , Gao XiaoShuai , Peng Liao , Jin Tao
Published: February 2022

Background

Ureteroscopy (URS) has been established as an effective treatment for stones in obese patients (OP). However, recent studies found that the efficacy of the procedure may be lower in patients with higher body mass index (BMI). In the current study, we aim to determine if obesity might influence the effectiveness and safety of URS.

Methods

In May 2021, a comprehensive search was conducted in the PubMed, EMBASE, Web of Science, Cochrane Library, and ClinicalTrials.gov to find eligible studies. Stone-free rate (SFR), operative time, length of stay, and complication rate were assessed utilizing RevMan 5.3.

Results

Thirteen studies involving 4,583 normal-weight patients (NWP), 2,465 OP, and 291 morbidly OP (MOP) were included. Pooled results showed that statistically similar SFR existed between OP and NWP [odds ratio (OR): 1.09; 95% CI: 0.79, 1.52; p = 0.59], and between MOP and NWP (OR: 1.03; 95% CI: 0.46, 2.31; p = 0.95). The operation time was similar between OP and NWP [mean difference (MD): −2.27; 95% CI: −8.98, 4.43; p = 0.51], and between MOP and NWP (MD: 4.85; 95% CI: −5.78, 15.47; p = 0.37). In addition, no significant difference regarding length of stay existed between OP and NWP (MD: −0.07; 95% CI: −0.20, 0.07; p = 0.33), and between MOP and NWP (MD: −0.06; 95% CI: −0.25, 0.14; p = 0.58). Furthermore, we observed similar minor complication rate between OP and NWP (OR: 1.04; 95% CI: 0.81, 1.32; p = 0.78), and between MOP and NWP (OR: 1.29; 95% CI: 0.80, 2.08; p = 0.30). The differences concerning major complication rate between OP and NWP (OR: 0.97; 95% CI: 0.39, 2.43; p = 0.95), and between MOP and NWP (OR: 2.01; 95% CI: 0.55, 7.30; p = 0.29) were also not significant.

Conclusions

Our study demonstrated that URS performed in MOP and OP appears to have the same efficacy and safety as well as in NWP group.
Assessment and Mitigation of Exposure of 3-D Printer Emissions
Authors: Kim Boowook , Shin Jae Hoo , Kim Hoi Pin , Jo Mi Seong , Kim Hee Sang , Lee Jong Sung , Lee Hong Ku , Kwon Hyuk Cheol , Han Sung Gu , Kang Noeul , Gulumian Mary , Bello Dhimiter , Yu Il Je
Published: February 2022

This study monitored particulates, and volatile organic compounds (VOCs) emitted from 3-D printers using acrylonitrile-butadiene-styrene copolymer (ABS) filaments at a workplace to assess exposure before and after introducing exposure mitigation measures. Air samples were collected in the printing room and adjacent corridor, and real-time measurements of ultrafine and fine particle were also conducted. Extensive physicochemical characterizations of 3-D printer emissions were performed, including real-time (size distribution, number concentration) nanoparticle characterization, size-fractionated mass distribution and concentration, as well as chemical composition for metals by ICP-MS and VOCs by GC-FID, real-time VOC monitors, and proton-transfer-reaction time-of-flight mass spectrometer (PTR-TOF-MS). Air sampling showed low levels of total suspended particulates (TSP, 9–12.5/m3), minimal levels (1.93–4 ppm) of total volatile organic chemicals (TVOC), and formaldehyde (2.5–21.7 ppb). Various harmful gases, such as formaldehyde, acrolein, acetone, hexane, styrene, toluene, and trimethylamine, were detected at concentrations in the 1–100 ppb by PTR-TOF-MS when air sample was collected into the Tedlar bag from the front of the 3-D printer. Ultrafine particles having an average particle size (30 nm count median diameter and 71 nm mass median diameter) increased during the 3-D printing operation. They decreased to the background level after the 3-D printing operation, while fine particles continually increased after the termination of 3-D printing to the next day morning. The exposure to 3-D printer emissions was greatly reduced after isolating 3-D printers in the enclosed space. Particle number concentration measured by real-time particle counters (DMAS and OPC) were greatly reduced after isolating 3-D printers to the isolated place.
Ovarian Oxidative Stress Induced Follicle Depletion After Zona Pellucida 3 Vaccination Is Associated With Subfertility in BALB/c Mice
Authors: Zhang Beibei , Qu Guanggang , Nan Yuchen , Zhou En-Min
Published: February 2022

Impaired follicular development associated with autoimmune ovarian disease (AOD), is a typical side effect of ZP3 vaccine-induced subfertility and contributes to the fertility decline, but the mechanism is unknown. In this study, a AOD model was established with recombinant mouse zona pellucida 3 (mZP3) protein in the BALB/c mice, and co-administrated with 0.5 mg/kg antioxidant stress drug sodium selenite (SS), whereas intraperitoneal injection was used and the relationships among oxidant stress (OS), follicle loss and fertility were evaluated. Here we demonstrated that ZP3 vaccination elicited high antibody titers and correlated with reductions of ovarian follicle numbers in both fertile and infertile mice, whereby magnitudes of both factors were negatively correlated with litter size. Moreover, increased OS in ovaries of mZP3-immunized mice was related to high levels of reactive oxygen species (ROS) and malondialdehyde (MDA), and is accompanied by a decrease in the total antioxidant capacity (TAC) of ovaries. Meanwhile, activation of caspase-3 and caspase-9 along with increased Bax and decreased Bcl-2 levels were observed, indicating the ongoing apoptosis of ovarian cells. Notably, inhibition of OS with SS reduced ovarian ROS and apoptosis levels, which was consisted with restoration of follicle numbers. More importantly, SS treatment when co-administered concurrently with mZP3 immunization led to significantly improved fertility (P< 0.05) and the average litter size of the mZP3-vaccinated SS-treated group increased by ~29.2% as compared with that of the vaccinated but untreated group. In conclusion, infertility caused by ZP3 vaccination was mechanistically associated with ovarian OS which triggered depletion of ovarian follicles.
Mechanism Design of a Transformable Crawling Robot and Feasibility Analysis for the Unstructured Environment
Authors: Yuan Jiwei , Wang Zhouyi , Zhang Zhourong , Xing Yuhang , Ji Aihong
Published: February 2022

The better application of crawl robots depends on their ability to adapt to unstructured environments with significant variations in their structural shape and size. This paper presents the design and analysis of a novel robot with different locomotion configurations to move through varying environments. The leg of the robot, inspired by insects, was designed as a multi-link structure, including the Hoekens linkage and multiple parallel four-link mechanisms. The end trajectory was a symmetrical closed curve composed of an approximate straight line and a shell curve with a downward opening. The special trajectory allowed the robot to share drives and components to achieve structural deformation and locomotion. The structural characteristics of the crawl robot on the inner and outer arcs were obtained based on the working space. The constraint relationship between the structure size, the radius of the arc, and the coefficient of static friction with which the robot could crawl on the arc were established. The feasible support posture and support position of the robot under different arc radii were obtained. The simulation tested the locomotion of the robot on the plane, arc, and restricted space. The robot can be used for detection, search, and rescue missions in unstructured environments.
Antimicrobial Use and Resistance in Plant Agriculture: A One Health Perspective
Authors: Miller Sally A. , Ferreira Jorge Pinto , LeJeune Jeffrey T.
Published: February 2022

Bactericides, fungicides, and other pesticides play an important role in the management of plant diseases. However, their use can result in residues on plants and in the environment, with potentially detrimental consequences. The use of streptomycin, oxytetracycline, copper-based products, and some fungicides is correlated with increased resistance among plant pathogens to these agents. Likewise, the recent rise in the incidence of environmental triazole fungicide-resistant Aspergillus fumigatus, the cause of aspergillosis in humans, has caused concern, particularly in Europe. Through horizontal gene transfer, genes can be exchanged among a variety of bacteria in the plant production environment, including phytopathogens, soil bacteria, and zoonotic bacteria that are occasionally present in that environment and in the food chain. Through mechanisms of horizontal gene transfer, co-resistance, cross-resistance, and gene up-regulation, resistance to one compound may confer resistance and multi-drug resistance to other similar, or even very dissimilar, compounds. Given the global rise in antimicrobial-resistant (AMR) organisms, and their effects on plant, animal, and human health, the prudent use of pesticides is required to maintain their effectiveness for food security and sustainable production, and to minimize the emergence and transmission of AMR organisms from horticultural sources.
Combination of Marker-Assisted Backcross Selection of Yr59 and Phenotypic Selection to Improve Stripe Rust Resistance and Agronomic Performance in Four Elite Wheat Cultivars
Authors: Zhang Min , Fang Taohong , Zhou Xinli , Chen Xianming , Li Xin , Feng Junyan , Yang Suizhuang , Kang Zhensheng
Published: February 2022

In this study, we successfully introgressed and validated Yr59 into four elite wheat cultivars, Jimai 22, Chuanmai 42, Zhengmai 9023 and Xinmai 26 through marker-assisted backcross selection. Used as female parents, these four cultivars were crossed with wheat line PI 660061 (Yr59). After two backcrosses and marker-assisted selection, the progenies were selfed and advanced to the BC2F4 generation. A total of 123 BC2F4 lines were selected based on agronomic traits and stripe rust resistance, and their BC2F5 and BC2F6 progenies were further evaluated for stripe rust resistance and agronomic traits. Seven markers linked with relevant genes, including Xbarc32, Xwgp5175, Xwmc557 and Xcfa2040 linked with Yr59; Xwmc658 with YrJ22; WE173 and Xbarc181 with Yr26, were used to genotype the breeding lines. A total of 109 introgression lines with positive markers for Yr59 were identified for further stripe rust and agronomic trait evaluation. Finally, 16 lines had higher levels resistance to stripe rust, and similar or superior agronomic traits compared to their parents were obtained. These lines can be released as new cultivars for various regions after regional tests and also can be used as resistance stocks for regional breeding programs to develop new cultivars with adequate and durable resistance to stripe rust.
Grapevine Gene Systems for Resistance to Gray Mold Botrytis cinerea and Powdery Mildew Erysiphe necator
Authors: Fedorina Jaroslava , Tikhonova Nadezhda , Ukhatova Yulia , Ivanov Roman , Khlestkina Elena
Published: February 2022

Grapevine is one of the world’s most economically important fruit crops. It is known that Vitis vinifera is a host for a large number of pathogenic agents, which significantly reduce the yield and berry quality. This forces the agronomists to use a huge amount of fungicides. Over the last few decades, alternative methods for solving this problem have been developed and continue to be developed. Such new technologies as marker-assisted selection, bioengineering of the rhizosphere, genetic engineering (transgenesis, cisgenesis and intragenesis) allow the production of pathogen-resistant cultivars. However, they are linked to a number of problems. One of the most promising methods is the creation of modified non-transgenic cultivars via CRISPR/Cas9-targeted mutagenesis. Therefore, researchers are actively looking for target genes associated with pathogen resistance and susceptibility. This review elucidates the main mechanisms of plant—pathogen interactions, the immune systems developed by plants, as well as the identified genes for resistance and susceptibility to the biotrophic pathogen Erysiphe necator and the necrotrophic pathogen Botrytis cinerea.
Effects of Soil Moisture Content on Germination and Physiological Characteristics of Rice Seeds with Different Specific Gravity
Authors: Hou Danping , Bi Junguo , Ma Li , Zhang Kangkang , Li Dongyi , Rehmani Muhammad Ishaq Asif , Tan Jinsong , Bi Qingyu , Wei Yuan , Liu Guolan , Yu Xinqiao , Luo Lijun
Published: February 2022

Soil relative water content and seed plumpness have been shown to be the key factors affecting seed germination and seedling growth of rice under direct drought cropping. It remains to be determined whether seed germination and seedling growth of water-saving and drought-resistant rice (WDR) and conventional rice with the same proportion of rice seed have the same response to soil moisture changes. The purpose of this study was to investigate the seed germination and physiological characteristics of the rice cultivars Guangliangyou 1813 (GLY-1813,indica hybrid rice) and Hanyou 73 ((HY-73), WDR) with four different specific gravities (T1, T2, T3, and T4; the rice seeds were divided into four specific gravity levels by weight using saline water, the representative specific gravities were <1.0, 1.0–1.1, 1.1–1.2 and >1.2 kg m−3, respectively), at five soil moisture content gradients (soil relative water contents of 10–20%, 20–40%, 40–60%, 60–80%, and 80–100%), under dry direct seeding conditions. The results showed that GLY-1813 had a higher germination potential, germination and seedling emergence rates, greater root dry weight, seedling dry weight, root oxidation activity, and chlorophyll content, and lower malondialdehyde (MDA) content when the soil relative water content was 20–40% or 40–60%. Cultivar HY-73 had the highest germination rate and seedling physiological activity at 20–40% relative water content; its growth vigor was better than that of GLY-1813 at the same soil moisture level. In conclusion, the soil relative water content for seed germination of HY-73 was 20–40%, which was less than that of GLY-1813. When soil relative water content was sufficient for seed germination and growth, the higher the plumpness of the rice seed, the easier it was to resist the negative effects of an adverse growth environment.
Effect of N on Growth, Antioxidant Capacity, and Chlorophyll Content of Sorghum
Authors: Ahmad Irshad , Zhu Guanglong , Zhou Guisheng , Song Xudong , Hussein Ibrahim Muhi Eldeen , Ibrahim Salih Ebtehal Gabralla
Published: February 2022

Nutrient management is an important challenge to agricultural sustainability. In this study, the effects of three nitrogen (N) fertilizer levels (N1 = 0, N2 =150, and N3 = 300 kg ha−1) on growth, chlorophyll content, and antioxidant capacity of two grain sorghum cultivars were investigated in a two-year (2017 and 2018) field trial. The treatments were arranged in a randomized complete block design with three replicates. Nitrogen application (N2 and N3) improved plant growth and antioxidant enzymes activity; compared to the control N1, N increased germination by 18.7%, leaf length by 7.5%, leaf weight by 10.8%, specific leaf weight by 11.6%, and plant height by 2.5% in Siyong 3180 cultivar and increased leaf width by 12.8% and stem weight by 27.4% in CFSH30 cultivar. In 2017 and 2018, increasing nitrogen N2 and N3 enhanced superoxide dismutase (SOD), catalase (CAT), and peroxidase (POD) activities and leaf protein content in both cultivars. While in 2017, chlorophyll content decreased in the CFSH30 cultivar. Our study showed that increased nitrogen supply could improve morpho-physiological activities of sorghum, but N3 was relatively more effective for sorghum growth in Siyong 3180 cultivar compared to CFSH30 cultivar.
Assessment of the Short-Term Impact of Anaerobic Digestate on Soil C Stock and CO2 Emissions in Shallow Water Table Conditions
Authors: Piccoli Ilaria , Francioso Ornella , Camarotto Carlo , Delle Vedove Gemini , Lazzaro Barbara , Giandon Paolo , Morari Francesco
Published: February 2022

Anaerobic digestion has been recently proposed as a more sustainable energy supply chain able to strengthen the existing security of supply provisions. Anaerobic digestate (AD) is the by-product of the anaerobic digestion process and presents organic fertilizer characteristics, but its agronomic usage has been hindered by both agronomic and environmental concerns. In this study, the impact of agricultural liquid (LD) and solid (SD) AD and beef manure (Man) was evaluated on some agro-environmental characteristics. First, the AD fractions functional groups were characterized by FT-IR, and then LD and SD performances were evaluated on soil organic carbon (SOC) stock and carbon dioxide (CO2) emissions and compared to beef manure (Man). The fertilizer impact was also considered with the presence or absence of a shallow water table. Results showed that SD increased of ca. 3 t ha−1 the SOC stock in the 0–20 cm soil profile with respect to LD, while it was comparable to Man despite the lower C input (6.7 vs. 8.7 t C ha−1), due to the presence of more stable compounds (e.g., lignin). The CO2 fluxes were affected by both fertilizer type and water table level. In the absence of a water table, the CO2 emissions (5.5 g CO2 m2 d−1) were driven by carbon content and quality in the fertilizer, while the presence of a shallower water table hindered mineralization of stable SOC and, in turn, reduced emissions (4.4 g CO2 m2 d−1). AD can be considered a beneficial solution to both maintain soil fertility and, at the same time, give new insight into a circular economy model, although further investigation on GHG emissions is required.
NRD: Nicotiana Resistance Database, a Comprehensive Platform of Stress Tolerance in Nicotiana
Authors: Chen Yudong , Yang Shuai , Li Jiaxuan , Wei Kesu , Yang Long
Published: February 2022

Nicotiana is one of the most important economic crops and model plants; however, its growth is affected by various biotic and abiotic stresses. In this study, 27,142 potential resistance genes were identified in six Nicotiana species, belonging to fourteen gene families and transcription factors related to stress resistance. The results indicate that Nicotiana has a potential abundance resistance background to biotic and abiotic stress, and these genes could be used in resistance breeding in the future. Analyzing the genome sequences of 19 pathogens, 5,421,414 Single Nucleotide Polymorphisms and 1958 Simple Sequence Repeats of pathogens have been obtained. The abundance loci show that the biotic pathogens have a high variability and biodiversity. An open-access database, named the Nicotiana Resistance Database (NRD), has been developed as a user-friendly resistance research platform for Nicotiana. The platform provides theoretical and technical support for the resistance research, including the cultivation of resistant varieties, and the genetics and breeding of Nicotiana and relative species.
A Field-Deployable Insulated Isothermal PCR (iiPCR) for the Global Surveillance of Toxoplasma gondii Infection in Cetaceans
Authors: Hsieh Meng-Jung , Yang Wei-Cheng
Published: February 2022

Toxoplasmosis is a zoonotic disease with veterinary and public health importance worldwide. Toxoplasma gondii infection in cetaceans is an indicator of land-to-sea oocyst pollution. However, there is a critical knowledge gap within the distribution of the T. gondii infection in cetaceans. To facilitate the global surveillance of this important zoonotic pathogen, we developed a field-deployable duplex insulated isothermal PCR (iiPCR) with automated magnetic bead-based DNA extraction for the on-site detection of T. gondii in stranded cetaceans. It targets the B1 gene of T. gondii combined with β2-microglobulin (B2M) gene of cetaceans as an internal control. Compared with the conventional qPCR assay, B1/B2M duplex iiPCR assay showed comparable sensitivity (21~86 bradyzoites in 25 mg of tissue) to detect spike-in standard of T. gondii DNA in cerebrum, cerebellum, skeletal muscle and myocardium tissues. Moreover, the overall agreement between the duplex iiPCR and qPCR was in almost perfect agreement (92%; 95% CI: 0.78–0.90; κ = 0.84) in detecting a synthetic spike-in standards. The B1/B2M iiPCR assay coupled with a field-deployable system provides a prompt (~1.5 h), feasible, highly sensitive and specific on-site diagnostic tool for T. gondii in stranded cetaceans. This platform provides one approach to evaluating aquatic ecosystem health and developing early warnings about negative impacts on humans and marine animals.
Antimicrobial Susceptibility, Virulence, and Genomic Features of a Hypervirulent Serotype K2, ST65 Klebsiella pneumoniae Causing Meningitis in Italy
Authors: Piazza Aurora , Perini Matteo , Mauri Carola , Comandatore Francesco , Meroni Elisa , Luzzaro Francesco , Principe Luigi
Published: February 2022

The rise of a new hypervirulent variant of Klebsiella pneumoniae (hvKp) was recently reported, mainly linked to the ST23 lineage. The hvKp variants can cause severe infections, including hepatic abscesses, bacteremia, and meningitis, with a particularly disconcerting propensity to cause community-acquired, life-threatening infection among young and otherwise healthy individuals. The present study aimed to report the clinical characteristics of a hypermucoviscous K. pneumoniae strain isolated in Italy and sustaining recurrent meningitis in a patient of Peruvian origin. A further objective was to retrospectively investigate, by means of whole-genome sequencing (WGS) analysis, the genomic features of such an isolate. The hypermucoviscosity phenotype of the strain (sk205y205t) was determined using the string test. Genomic information was obtained by WGS (Illumina) and bioinformatic analysis. Strain sk205y205t was susceptible to most antibiotics, despite the presence of some resistance genes, including blaSHV-11, blaSHV-67, fosA, and acrR. The isolate belonged to ST65 and serotype K2, and exhibited several virulence factors related to the hvKp variant. Among these, were the siderophore genes entB, irp2, iroN, iroB, and iucA; the capsule-regulating genes rmpA and rmpA2; and the type 1 and 3 fimbriae fimH27 and mrkD, respectively. A further operon, encoding the genotoxin colibactin (clbA-Q), was also identified. The virulence plasmids pK2044, pRJA166b, and pNDM. MAR were also detected. Phylogenetic investigation showed that this Italian strain is highly similar to a Chinese isolate, suggesting a hidden circulation of this hvKp ST65 K2 lineage.
Transcriptome Analysis of the Response of Mature Helicobacter pylori Biofilm to Different Doses of Lactobacillus salivarius LN12 with Amoxicillin and Clarithromycin
Authors: Jin Fang , Yang Hong
Published: February 2022

Helicobacter pylori is a gastrointestinal pathogen with a high infection rate. Probiotics are clinically used as an adjuvant to improve the cure rate and reduce the side effects of antibiotic treatment for H. pylori. This study is the first to explore the effects of a cell-free supernatant of high- or low-dose Lactobacillus salivarius LN12 combined with amoxicillin (AMX) and clarithromycin (CLR) on H. pylori 3192 biofilms in terms of the biofilm biomass, survival rates, biofilm structure, and transcriptome. The results showed that the combination of the CFS of high-dose LN12 with AMX and CLR had stronger effects on the biofilm biomass, survival rate, and structure of H. pylori 3192 biofilms. H. pylori 3192 biofilms may increase the expression of NADH-related genes and downregulate flagellar assembly and quorum sensing-related receptor genes to deal with the stronger stress effects of high-dose LN12 with AMX and CLR. In conclusion, the biofilm biomass, survival rate, structure, and transcriptome results showed that the combination of LN12 CFS with AMX and CLR had dose effects. We recommend that compared with low doses, high doses of L. salivarus LN12 combined with AMX and CLR may be more effective for H. pylori biofilm than low doses.
Enteral Vancomycin to Eliminate MRSA Carriership of the Digestive Tract in Critically Ill Patients
Authors: Buitinck Sophie H. , Koopmans Matty , Determann Rogier M. , Jansen Rogier R. , van der Voort Peter H. J.
Published: February 2022

Background: Carriership with methicillin resistant Staphylococcus aureus (MRSA) is a risk for the development of secondary infections in critically ill patients. Previous studies suggest that enteral vancomycin is able to eliminate enteral carriership with MRSA. Data on individual effects of this treatment are lacking. Methods: Retrospective analysis of a database containing 15 year data of consecutive patients from a mixed medical-(cardio)surgical 18 bedded intensive care unit was conducted. All consecutive critically ill patients with enteral MRSA carriership detected in throat and/or rectal samples were collected. We analyzed those with follow-up cultures to determine the success rate of enteral vancomycin. Topical application of 2% vancomycin in a sticky oral paste was performed combined with a vancomycin solution of 500 mg four times daily in the nasogastric tube. This treatment was added to a regimen of selective digestive tract decontamination (SDD) to prevent ICU acquired infection. Results: Thirteen patients were included. The mean age was 65 years and the median APACHE II score was 21. MRSA was present in the throat in 8 patients and in both throat and rectum in 5 patients. In all patients MRSA was successfully eliminated from both throat and rectum, which took 2–11 days with a median duration until decontamination of 4 days. Secondary infections with MRSA did not occur. Conclusions: Topical treatment with vancomycin in a 2% sticky oral paste four times daily in the nasogastric tube was effective in all patients in the elimination of MRSA and prevented secondary MRSA infections.
Coriolus Versicolor Downregulates TLR4/NF-κB Signaling Cascade in Dinitrobenzenesulfonic Acid-Treated Mice: A Possible Mechanism for the Anti-Colitis Effect
Authors: Impellizzeri Daniela , Fusco Roberta , Genovese Tiziana , Cordaro Marika , D’Amico Ramona , Trovato Salinaro Angela , Ontario Maria Laura , Modafferi Sergio , Cuzzocrea Salvatore , Di Paola Rosanna , Calabrese Vittorio , Siracusa Rosalba
Published: February 2022

Inflammatory bowel diseases (IBDs) are disorders characterized by chronic inflammation of the intestinal tract. The focus of the present study was to examine the effect of the fungus Coriolus versicolor (CV), underlining its correlation with Toll-like receptors 4 (TLR4) and nuclear factor erythroid 2-related factor 2 (Nrf2); we aim to evaluate its anti-inflammatory and antioxidant effect in mice exposed to experimental colitis. The model was induced in mice by colon instillation of dinitrobenzenesulfonic acid (DNBS), CV was administered orally (200 mg per kg) daily for 4 days. On day 4, the animals were killed, and the tissues collected for histological, biochemical, and molecular analyses. Four days after DNBS administration, CC motif chemokine ligand 2 (CCL2), prostaglandin E2 (PGE2), interleukin-1β (IL-1β), and tumor necrosis factor-α (TNF-α) production increased in association with damage to the colon. Neutrophil infiltration, as assessed by myeloperoxidase (MPO) activity, in the mucosa was associated with overexpression of P-selectin and intercellular adhesion molecule 1 (ICAM1). Immunohistochemistry for nitrotyrosine and poly-(ADP-Ribose)-polymerase (PARP) showed evident stain in the inflamed colon. Treatment with CV significantly reduced the appearance of colon changes and weight loss. These effects were associated with a remarkable ability of CV to reduce the expression of TLR4 and modulate the pathway of nuclear factor kappa-light-chain-enhancer of activated B cells (NF-kB). This improved the colon architecture, reduced MPO activity, the release of proinflammatory cytokines, the presence of nitrotyrosine, and the hyperactivation of PARP, as well as the up-regulation of P-selectin and ICAM1. Furthermore, we studied the action of CV on the Nrf2/HO-1 pathway, which is important for maintaining redox balance, demonstrating that CV by significantly increasing both enzymes is able to counteract the oxidative stress induced by DNBS. Taken together, our results clearly show that this natural compound can be considered as a possible dietary supplement against colitis.
Antioxidant Therapy in Oxidative Stress-Induced Neurodegenerative Diseases: Role of Nanoparticle-Based Drug Delivery Systems in Clinical Translation
Authors: Ashok Anushruti , Andrabi Syed Suhail , Mansoor Saffar , Kuang Youzhi , Kwon Brian K. , Labhasetwar Vinod
Published: February 2022

Free radicals are formed as a part of normal metabolic activities but are neutralized by the endogenous antioxidants present in cells/tissue, thus maintaining the redox balance. This redox balance is disrupted in certain neuropathophysiological conditions, causing oxidative stress, which is implicated in several progressive neurodegenerative diseases. Following neuronal injury, secondary injury progression is also caused by excessive production of free radicals. Highly reactive free radicals, mainly the reactive oxygen species (ROS) and reactive nitrogen species (RNS), damage the cell membrane, proteins, and DNA, which triggers a self-propagating inflammatory cascade of degenerative events. Dysfunctional mitochondria under oxidative stress conditions are considered a key mediator in progressive neurodegeneration. Exogenous delivery of antioxidants holds promise to alleviate oxidative stress to regain the redox balance. In this regard, natural and synthetic antioxidants have been evaluated. Despite promising results in preclinical studies, clinical translation of antioxidants as a therapy to treat neurodegenerative diseases remains elusive. The issues could be their low bioavailability, instability, limited transport to the target tissue, and/or poor antioxidant capacity, requiring repeated and high dosing, which cannot be administered to humans because of dose-limiting toxicity. Our laboratory is investigating nanoparticle-mediated delivery of antioxidant enzymes to address some of the above issues. Apart from being endogenous, the main advantage of antioxidant enzymes is their catalytic mechanism of action; hence, they are significantly more effective at lower doses in detoxifying the deleterious effects of free radicals than nonenzymatic antioxidants. This review provides a comprehensive analysis of the potential of antioxidant therapy, challenges in their clinical translation, and the role nanoparticles/drug delivery systems could play in addressing these challenges.
Protective Effect of Liposomal Epigallocatechin-Gallate in Experimental Gentamicin-Induced Hepatotoxicity
Authors: Bulboacă Adriana Elena , Porfire Alina Silvia , Rus Vasile , Nicula Cristina Ariadna , Bulboacă Corneliu Angelo , Bolboacă Sorana D.
Published: February 2022

Our study aimed to assess the effect of liposomal epigallocatechin-gallate (LEGCG) compared with epigallocatechin-gallate (EGCG) solution on hepatic toxicity induced by gentamicin (G) administration in rats. Five groups were evaluated, a control group (no G administration) and four groups that received G (1 mL, i.p, 80 mg/kg b.w. (body weight/day), for 7 days) to which we associated daily administration 30 min before G of EGCG (G-EGCG, 2.5 mg/0.1 kg b.w.), LEGCG (G-LEGCG, 2.5 mg/0.1 kg b.w.) or silymarin (100 mg/kg b.w./day). The nitro-oxidative stress (NOx), catalase (CAT), TNF-α, transaminases, creatinine, urea, metalloproteinase (MMP) 2 and 9, and liver histopathological changes were evaluated. LEGCG exhibited better efficacy than EGCG, improving the oxidant/antioxidant balance (p = 0.0125 for NOx and 0.0032 for CAT), TNF-α (p < 0.0001), MMP-2 (p < 0.0001), aminotransferases (p = 0.0001 for AST and 0.0136 for ALT), creatinine (p < 0.0001), urea (p = 0.0006) and histopathologic liver changes induced by gentamicin. Our study demonstrated the beneficial effect of EGCG with superior results of the liposomal formulation for hepatoprotection in experimental hepatic toxicity induced by gentamicin.
Adaptive Deconvolution-Based Stereo Matching Net for Local Stereo Matching
Authors: Ma Xin , Zhang Zhicheng , Wang Danfeng , Luo Yu , Yuan Hui
Published: February 2022

In deep learning-based local stereo matching methods, larger image patches usually bring better stereo matching accuracy. However, it is unrealistic to increase the size of the image patch size without restriction. Arbitrarily extending the patch size will change the local stereo matching method into the global stereo matching method, and the matching accuracy will be saturated. We simplified the existing Siamese convolutional network by reducing the number of network parameters and propose an efficient CNN based structure, namely adaptive deconvolution-based disparity matching net (ADSM net) by adding deconvolution layers to learn how to enlarge the size of input feature map for the following convolution layers. Experimental results on the KITTI2012 and 2015 datasets demonstrate that the proposed method can achieve a good trade-off between accuracy and complexity.
Electrode Kinetics of Ion Jelly and Ion Sol-Gel Redox Materials on Screen-Printed Electrodes
Authors: Carvalho Rui N. L. , Cordas Cristina M. , da Fonseca Luís J. P.
Published: February 2022

Several hydrogel materials have been proposed for drug delivery systems and other purposes as interfacial materials, such as components for fuel cells and immobilization of biomolecules. In the present work, two materials, an ion sol-gel, based on 1-octyl-3-methylimidazolium bis(trifluoromethylsulfonyl)imide, and an ion jelly (1-ethyl-3-methylimidazolium ethylsulfate) film deposited on carbon screen-printed electrodes, were electrochemically characterized. The electrode kinetics of ion jelly and ion sol-gel materials were compared by using ferrocyanide/ferricyanide redox reaction couple as a model redox process. Diffusion coefficients were calculated and compared to those obtained with the model redox couple in non-modified electrodes. Results pointed to a decrease of two and four orders of magnitude in the diffusion coefficients, respectively, for ion jelly and ion sol-gel film modified electrodes. Heterogeneous electron transfer constants for the ferrocyanide/ferricyanide ion redox process were also determined for modified and non-modified electrodes, in which the ion sol-gel film modified electrode presented the lower values. This work sought to contribute to the understanding of these materials’ properties, with emphasis on their diffusion, conductivity, and electrochemical behavior, namely reversibility, transfer coefficients, and kinetics, and optimize the most suitable properties for different possible applications, such as drug delivery.