bluuebunny/crossref_metadata_2025 huggingface dataset:
Supplementary Figure 5 from Candidate Pathways for Promoting Differentiation or Quiescence of Oligodendrocyte Progenitor-like Cells in Glioma
Authors: Dougherty Joseph D. , Fomchenko Elena I. , Akuffo Afua A. , Schmidt Eric , Helmy Karim Y. , Bazzoli Elena , Brennan Cameron W. , Holland Eric C. , Milosevic Ana
Published: April 2023

PDF file - 506K, Differentiation or Quiescence candidates show similar expression patterns in mouse and human glioma. A: Scatterplot of whole tumor (not TRAP) microarray data (x-axis), compared to normal mouse cortex (y-axis), shows strong enrichment of most OPC genes (blue), except the for DorQ candidates, which show only modest enrichment (purple). For comparison, there is no enrichment of mature oligodendrocyte gene (green). Up to 50 genes shown per class. B: Scatterplot of human proneural tumor microarray data from TCGA (x-axis), compared to normal human brain (y-axis), shows strong enrichment of most OPC genes (blue), and only modest enrichment of DorQ candidates (purple). For comparison, there is no enrichment of mature oligodendrocyte gene (green). C: Scatterplot of log2 fold changes for candidates, OPC and mature oligodendrocyte genes, in human (y-axis) and mouse tumor vs. normal comparisons shows good cross species correlation of gene expression patterns (myelinating oligodendrocytes, red, .44, DORQ candidates, purple, .49, OPC, blue, .62. Pearsons correlations). D: Candidate genes are less enriched then other OPC genes in both human (p<.05), and mouse (p < 1E-6, Welch's T-Test). Myelinating oligodendrocyte genes are shown for comparison
Supplementary Figure 4 from Candidate Pathways for Promoting Differentiation or Quiescence of Oligodendrocyte Progenitor-like Cells in Glioma
Authors: Dougherty Joseph D. , Fomchenko Elena I. , Akuffo Afua A. , Schmidt Eric , Helmy Karim Y. , Bazzoli Elena , Brennan Cameron W. , Holland Eric C. , Milosevic Ana
Published: April 2023

PDF file - 111K, Human Proneural tumors are relatively enriched in OPC genes. Expression profiles of 202 gliomas from TCGARN were analyzed, grouped into the four subclasses (2) A: Using gene symbol to map human and mouse homologues, highly significant enrichment of OPC genes in the human 'proneural' specific gene lists was identified (Chi-square p < 5E-31), but not in the other human glioma gene lists. Percent of tumor subclass specific gene lists overlapping with OPC specific genes. **** p<1E-32, + p<.06, Chi-square. All gene lists used pSI<.01 as a cut-off. B: Hierarchical clustering with just OPC genes is sufficient to distinguish most proneural tumors from other tumor subtypes. C: Expression level of average of OPC genes is higher in 'proneural' tumors though they are present at detectable levels in all subtypes. *p<.003, **p<.003, ***p<1E-7, ANOVA with Tukey Post Hocs.
Supplementary Figure 1 from Histone Deacetylase Inhibitors Influence Chemotherapy Transport by Modulating Expression and Trafficking of a Common Polymorphic Variant of the ABCG2 Efflux Transporter
Authors: Basseville Agnes , Tamaki Akina , Ierano Caterina , Trostel Shana , Ward Yvona , Robey Robert W. , Hegde Ramanujan S. , Bates Susan E.
Published: April 2023

PDF file - 47K, Effect of inhibition of autophagy on ABCG2 expression
Supplementary Figure 4 from 53BP1 Is a Haploinsufficient Tumor Suppressor and Protects Cells from Radiation Response in Glioma
Authors: Squatrito Massimo , Vanoli Fabio , Schultz Nikolaus , Jasin Maria , Holland Eric C.
Published: April 2023

PDF file - 130K, Cell cycle alteration in 53BP1 silenced cells, upon exposure to IR
Supplementary Table 1 from Biomarkers of HPV in Head and Neck Squamous Cell Carcinoma
Authors: Liang Caihua , Marsit Carmen J. , McClean Michael D. , Nelson Heather H. , Christensen Brock C. , Haddad Robert I. , Clark John R. , Wein Richard O. , Grillone Gregory A. , Houseman E. Andres , Halec Gordana , Waterboer Tim , Pawlita Michael , Krane Jeffrey F. , Kelsey Karl T.
Published: April 2023

PDF file - 64K, Characteristics among the whole cases and those with DNA or P16 detected, Eastern Massachusetts, 1999-2003
Supplementary Figure 1 from Ultrasensitive Measurement of Hotspot Mutations in Tumor DNA in Blood Using Error-Suppressed Multiplexed Deep Sequencing
Authors: Narayan Azeet , Carriero Nicholas J. , Gettinger Scott N. , Kluytenaar Jeannie , Kozak Kevin R. , Yock Torunn I. , Muscato Nicole E. , Ugarelli Pedro , Decker Roy H. , Patel Abhijit A.
Published: April 2023

PDF file - 76K, Scheme for appending modular barcodes to gene-specific primers
Supplementary Video 5 from Cathepsin B Inhibition Limits Bone Metastasis in Breast Cancer
Authors: Withana Nimali P. , Blum Galia , Sameni Mansoureh , Slaney Clare , Anbalagan Arulselvi , Olive Mary B. , Bidwell Bradley N. , Edgington Laura , Wang Ling , Moin Kamiar , Sloane Bonnie F. , Anderson Robin L. , Bogyo Matthew S. , Parker Belinda S.
Published: April 2023

AVI file - 4.5MB, Degradation of collagen IV by 4T1.2 cells + CA-074 inhibitor
Supplementary Video 2 from Cathepsin B Inhibition Limits Bone Metastasis in Breast Cancer
Authors: Withana Nimali P. , Blum Galia , Sameni Mansoureh , Slaney Clare , Anbalagan Arulselvi , Olive Mary B. , Bidwell Bradley N. , Edgington Laura , Wang Ling , Moin Kamiar , Sloane Bonnie F. , Anderson Robin L. , Bogyo Matthew S. , Parker Belinda S.
Published: April 2023

AVI file - 4.7MB, Degradation of collagen IV by 4T1.2 CTSBkd cells
Supplementary Figure 1 from Metastasis Suppressor NM23-H1 Promotes Repair of UV-Induced DNA Damage and Suppresses UV-Induced Melanomagenesis
Authors: Jarrett Stuart G. , Novak Marian , Dabernat Sandrine , Daniel Jean-Yves , Mellon Isabel , Zhang Qingbei , Harris Nathan , Ciesielski Michael J. , Fenstermaker Robert A. , Kovacic Diane , Slominski Andrzej , Kaetzel David M.
Published: April 2023

PDF file - 179K
Supplementary Methods from AMPKα Modulation in Cancer Progression: Multilayer Integrative Analysis of the Whole Transcriptome in Asian Gastric Cancer
Authors: Kim Yon Hui , Liang Han , Liu Xiuping , Lee Ju-Seog , Cho Jae Yong , Cheong Jae-Ho , Kim Hoguen , Li Min , Downey Thomas J. , Dyer Matthew D. , Sun Yongming , Sun Jingtao , Beasley Ellen M. , Chung Hyun Cheol , Noh Sung Hoon , Weinstein John N. , Liu Chang-Gong , Powis Garth
Published: April 2023

PDF file - 51K
Supplementary Table 1 from Receptor Tyrosine Kinase Genes Amplified in Glioblastoma Exhibit a Mutual Exclusivity in Variable Proportions Reflective of Individual Tumor Heterogeneity
Authors: Little Suzanne E. , Popov Sergey , Jury Alexa , Bax Dorine A. , Doey Lawrence , Al-Sarraj Safa , Jurgensmeier Juliane M. , Jones Chris
Published: April 2023

XLS file - 249K
Supplementary Methods, Figure Legends 1-11 from Mitochondria-Targeted Drugs Synergize with 2-Deoxyglucose to Trigger Breast Cancer Cell Death
Authors: Cheng Gang , Zielonka Jacek , Dranka Brian P. , McAllister Donna , Mackinnon A. Craig , Joseph Joy , Kalyanaraman Balaraman
Published: April 2023

PDF file - 115K
Supplementary Figure 1 from Interleukin-17 Promotes Formation and Growth of Prostate Adenocarcinoma in Mouse Models
Authors: Zhang Qiuyang , Liu Sen , Ge Dongxia , Zhang Qingsong , Xue Yun , Xiong Zhenggang , Abdel-Mageed Asim B. , Myers Leann , Hill Steven M. , Rowan Brian G. , Sartor Oliver , Melamed Jonathan , Chen Zhenbang , You Zongbing
Published: April 2023

PDF file - 3MB, Percentages of PIN and invasive adenocarcinoma in different prostatic lobes.
Supplementary Materials and Methods from Regulation of Monocarboxylate Transporter MCT1 Expression by p53 Mediates Inward and Outward Lactate Fluxes in Tumors
Authors: Boidot Romain , Végran Frédérique , Meulle Aline , Le Breton Aude , Dessy Chantal , Sonveaux Pierre , Lizard-Nacol Sarab , Feron Olivier
Published: April 2023

PDF file - 36K
Supplementary Figure 6 from LIGHT Delivery to Tumors by Mesenchymal Stem Cells Mobilizes an Effective Antitumor Immune Response
Authors: Zou Weibin , Zheng Huilin , He Tong-Chuan , Chang Jinjia , Fu Yang-Xin , Fan Weimin
Published: April 2023

PDF file - 1.3MB, Detection of I-Ad on MSC-L
Supplementary Figure 5 from LIGHT Delivery to Tumors by Mesenchymal Stem Cells Mobilizes an Effective Antitumor Immune Response
Authors: Zou Weibin , Zheng Huilin , He Tong-Chuan , Chang Jinjia , Fu Yang-Xin , Fan Weimin
Published: April 2023

PDF file - 2.0MB, MSC-L did not mainly impact on tumor proliferation, apoptosis and angiogenesis
Supplementary Figure 4 from LIGHT Delivery to Tumors by Mesenchymal Stem Cells Mobilizes an Effective Antitumor Immune Response
Authors: Zou Weibin , Zheng Huilin , He Tong-Chuan , Chang Jinjia , Fu Yang-Xin , Fan Weimin
Published: April 2023

PDF file - 1.8MB, MSC-L enhanced inflammation reaction in tumor tissues
Supplementary Figure 4 from Chromogranin A Regulates Tumor Self-Seeding and Dissemination
Authors: Dondossola Eleonora , Crippa Luca , Colombo Barbara , Ferrero Elisabetta , Corti Angelo
Published: April 2023

PDF file - 258K
Supplementary Figure 7 from Targeting Protein Synthesis in a Myc/mTOR-Driven Model of Anorexia-Cachexia Syndrome Delays Its Onset and Prolongs Survival
Authors: Robert Francis , Mills John R. , Agenor Aouod , Wang Dantong , DiMarco Sergio , Cencic Regina , Tremblay Michel L. , Gallouzi Imed Eddine , Hekimi Siegfried , Wing Simon S. , Pelletier Jerry
Published: April 2023

PDF file - 662K
Supplementary Figure 2 from Systemic Combination Virotherapy for Melanoma with Tumor Antigen-Expressing Vesicular Stomatitis Virus and Adoptive T-cell Transfer
Authors: Rommelfanger Diana M. , Wongthida Phonphimon , Diaz Rosa M. , Kaluza Karen M. , Thompson Jill M. , Kottke Timothy J. , Vile Richard G.
Published: April 2023

PDF file, 75K, Autoimmunity.
Supplementary Figure 1 from Cell Death via DR5, but not DR4, Is Regulated by p53 in Myeloma Cells
Authors: Surget Sylvanie , Chiron David , Gomez-Bougie Patricia , Descamps Géraldine , Ménoret Emmanuelle , Bataille Régis , Moreau Philippe , Le Gouill Steven , Amiot Martine , Pellat-Deceunynck Catherine
Published: April 2023

PDF file - 94K, TP53Wt HMCLs overexpressed p21, Bax and MDM2 compared with TP53Abn HMCLs
Supplementary Figure 6 from NAC1 Is an Actin-Binding Protein That Is Essential for Effective Cytokinesis in Cancer Cells
Authors: Yap Kai Lee , Fraley Stephanie I. , Thiaville Michelle M. , Jinawath Natini , Nakayama Kentaro , Wang Jianlong , Wang Tian-Li , Wirtz Denis , Shih Ie-Ming
Published: April 2023

PDF file - 52K, Silencing profilin-1 in HeLa cell line
Supplementary Figure 4 from NAC1 Is an Actin-Binding Protein That Is Essential for Effective Cytokinesis in Cancer Cells
Authors: Yap Kai Lee , Fraley Stephanie I. , Thiaville Michelle M. , Jinawath Natini , Nakayama Kentaro , Wang Jianlong , Wang Tian-Li , Wirtz Denis , Shih Ie-Ming
Published: April 2023

PDF file - 100K, Displacement of HeLa cells after NAC1 shRNA treatment
Supplementary Video 4 from RALBP1/RLIP76 Depletion in Mice Suppresses Tumor Growth by Inhibiting Tumor Neovascularization
Authors: Lee Seunghyung , Wurtzel Jeremy G. T. , Singhal Sharad S. , Awasthi Sanjay , Goldfinger Lawrence E.
Published: April 2023

MOV file - 695K, 3D muCT reconstruction of the vasculature in a LLC tumor derived in a RLIP76-/- mouse
Supplementary Video 3 from RALBP1/RLIP76 Depletion in Mice Suppresses Tumor Growth by Inhibiting Tumor Neovascularization
Authors: Lee Seunghyung , Wurtzel Jeremy G. T. , Singhal Sharad S. , Awasthi Sanjay , Goldfinger Lawrence E.
Published: April 2023

MOV file - 948K, 3D muCT reconstruction of the vasculature in a LLC tumor derived in a wild type mouse
Supplementary Figure 2 from NAC1 Is an Actin-Binding Protein That Is Essential for Effective Cytokinesis in Cancer Cells
Authors: Yap Kai Lee , Fraley Stephanie I. , Thiaville Michelle M. , Jinawath Natini , Nakayama Kentaro , Wang Jianlong , Wang Tian-Li , Wirtz Denis , Shih Ie-Ming
Published: April 2023

PDF file - 60K, Silencing of NAC1 in HeLa cell line
Supplementary Figure Legends 1-5, Video Legends 1-4 from RALBP1/RLIP76 Depletion in Mice Suppresses Tumor Growth by Inhibiting Tumor Neovascularization
Authors: Lee Seunghyung , Wurtzel Jeremy G. T. , Singhal Sharad S. , Awasthi Sanjay , Goldfinger Lawrence E.
Published: April 2023

Supplementary Figure Legends 1-5, Video Legends 1-4 from RALBP1/RLIP76 Depletion in Mice Suppresses Tumor Growth by Inhibiting Tumor Neovascularization
Supplementary Figure 5 from RALBP1/RLIP76 Depletion in Mice Suppresses Tumor Growth by Inhibiting Tumor Neovascularization
Authors: Lee Seunghyung , Wurtzel Jeremy G. T. , Singhal Sharad S. , Awasthi Sanjay , Goldfinger Lawrence E.
Published: April 2023

PDF file - 267K
Supplementary Figure 6 from BRAF Inhibitor Vemurafenib Improves the Antitumor Activity of Adoptive Cell Immunotherapy
Authors: Koya Richard C. , Mok Stephen , Otte Nicholas , Blacketor Kevin J. , Comin-Anduix Begonya , Tumeh Paul C. , Minasyan Aspram , Graham Nicholas A. , Graeber Thomas G. , Chodon Thinle , Ribas Antoni
Published: April 2023

PDF file - 45K, Gating strategy for the studies of intracellular interferon gamma (IFN-�) production by tumor infiltrating lymphocytes (TIL) with or without in vivo treatment with vemurafenib
Supplementary Table 1 from CCN6 Modulates BMP Signaling via the Smad-Independent TAK1/p38 Pathway, Acting to Suppress Metastasis of Breast Cancer
Authors: Pal Anupama , Huang Wei , Li Xin , Toy Kathy A. , Nikolovska-Coleska Zaneta , Kleer Celina G.
Published: April 2023

PDF file, 98K, List of TGF-B superfamily genes affected by CCN6 knockdown in HME cells measured by real time PCR.
Supplementary Table 4 from ESE3/EHF Controls Epithelial Cell Differentiation and Its Loss Leads to Prostate Tumors with Mesenchymal and Stem-like Features
Authors: Albino Domenico , Longoni Nicole , Curti Laura , Mello-Grand Maurizia , Pinton Sandra , Civenni Gianluca , Thalmann George , D'Ambrosio Gioacchino , Sarti Manuela , Sessa Fausto , Chiorino Giovanna , Catapano Carlo V. , Carbone Giuseppina M.
Published: April 2023

XLS file - 156K, Genes up- and down- regulated in ESE3low tumors compared to all tumors (Q<0.05)
Supplementary Figure 3 from CCN6 Modulates BMP Signaling via the Smad-Independent TAK1/p38 Pathway, Acting to Suppress Metastasis of Breast Cancer
Authors: Pal Anupama , Huang Wei , Li Xin , Toy Kathy A. , Nikolovska-Coleska Zaneta , Kleer Celina G.
Published: April 2023

PDF file, 330K, A. rhCCN6 protein rescues the upregulation of P-p38 and the invasive phenotype due to CCN6 KD in HME cells. B. p38 kinase activity inhibitor SB203580 reversed the invasive phenotype of CCN6 KD HME cells. C. Inhibition of p38 kinase by 20 �M SB203850 or 10 �M SB202190 is sufficient to reduce invasion of SUM149 IBC cell line and aggressive MDA-MB-231 breast cancer cells.
Supplementary Figure 5 from An NMR Metabolomics Approach for the Diagnosis of Leptomeningeal Carcinomatosis
Authors: Cho Hye Rim , Wen He , Ryu Young Jin , An Yong Jin , Kim Hyo Cheol , Moon Woo Kyung , Han Moon Hee , Park Sunghyouk , Choi Seung Hong
Published: April 2023

PDF file - 121K, Correlation between the NMR spectral markers and the thickness of the LC infiltration in the 7 day-LC animals
Supplementary Table 2 from Loss of Rassf1a Synergizes with Deregulated Runx2 Signaling in Tumorigenesis
Authors: van der Weyden Louise , Papaspyropoulos Angelos , Poulogiannis George , Rust Alistair G. , Rashid Mamunur , Adams David J. , Arends Mark J. , O'Neill Eric
Published: April 2023

PDF file - 54K, Details of the microarray expression datasets used to analyse RASSF1 and RUNX2 expression levels
Supplementary Table 1 from Distinct microRNA Expression Profiles in Prostate Cancer Stem/Progenitor Cells and Tumor-Suppressive Functions of let-7
Authors: Liu Can , Kelnar Kevin , Vlassov Alexander V. , Brown David , Wang Junchen , Tang Dean G.
Published: April 2023

PDF file - 72K, HPCa sample information
Supplementary Figures 1-11 from Distinct microRNA Expression Profiles in Prostate Cancer Stem/Progenitor Cells and Tumor-Suppressive Functions of let-7
Authors: Liu Can , Kelnar Kevin , Vlassov Alexander V. , Brown David , Wang Junchen , Tang Dean G.
Published: April 2023

PDF file - 1.5MB, Supplemental figures: microRNA expression profiling in prostate cancer stem/progenitor cell populations and biological and functional studies on selective miRNAs including let-7 and miR-301 in prostate cancer development
Supplementary Figure 1 from Smac Mimetic LBW242 Sensitizes XIAP-Overexpressing Neuroblastoma Cells for TNF-α–Independent Apoptosis
Authors: Eschenburg Georg , Eggert Angelika , Schramm Alexander , Lode Holger N. , Hundsdoerfer Patrick
Published: April 2023

PDF file - 656K, Induction of apoptosis in NXS2 neuroblastoma cells by LBW242 in combination with etoposide or vincristine.
Supplementary Methods from ARN-509: A Novel Antiandrogen for Prostate Cancer Treatment
Authors: Clegg Nicola J. , Wongvipat John , Joseph James D. , Tran Chris , Ouk Samedy , Dilhas Anna , Chen Yu , Grillot Kate , Bischoff Eric D. , Cai Ling , Aparicio Anna , Dorow Steven , Arora Vivek , Shao Gang , Qian Jing , Zhao Hong , Yang Guangbin , Cao Chunyan , Sensintaffar John , Wasielewska Teresa , Herbert Mark R. , Bonnefous Celine , Darimont Beatrice , Scher Howard I. , Smith-Jones Peter , Klang Mark , Smith Nicholas D. , De Stanchina Elisa , Wu Nian , Ouerfelli Ouathek , Rix Peter J. , Heyman Richard A. , Jung Michael E. , Sawyers Charles L. , Hager Jeffrey H.
Published: April 2023

PDF file - 181K
Supplementary Figure 2 from Acyclic Retinoid Targets Platelet-Derived Growth Factor Signaling in the Prevention of Hepatic Fibrosis and Hepatocellular Carcinoma Development
Authors: Okada Hikari , Honda Masao , Campbell Jean S. , Sakai Yoshio , Yamashita Taro , Takebuchi Yuuki , Hada Kazuhiro , Shirasaki Takayoshi , Takabatake Riuta , Nakamura Mikiko , Sunagozaka Hajime , Tanaka Takuji , Fausto Nelson , Kaneko Shuichi
Published: April 2023

PDF file - 3.4MB, Histological assessment of hepatic adenoma, HCC and non-tumor regions of Pdgf-c Tg and WT mouse livers fed with different diets.
Supplementary Figure 1 from Acyclic Retinoid Targets Platelet-Derived Growth Factor Signaling in the Prevention of Hepatic Fibrosis and Hepatocellular Carcinoma Development
Authors: Okada Hikari , Honda Masao , Campbell Jean S. , Sakai Yoshio , Yamashita Taro , Takebuchi Yuuki , Hada Kazuhiro , Shirasaki Takayoshi , Takabatake Riuta , Nakamura Mikiko , Sunagozaka Hajime , Tanaka Takuji , Fausto Nelson , Kaneko Shuichi
Published: April 2023

PDF file - 348K, A: Immunohistochemica l staining of collagen 4, desmin, CD31 and Tie2 expression in Pdgf-c T9 or WT mouse livers fed with basal diet or 0.06% peretinoin. B: Densitometric analysis of CD31 - or CD34-positive areas in liver of Pdgf-c T9 Tgmice fed different diets (n=10).
Supplementary Figure 1 from ARN-509: A Novel Antiandrogen for Prostate Cancer Treatment
Authors: Clegg Nicola J. , Wongvipat John , Joseph James D. , Tran Chris , Ouk Samedy , Dilhas Anna , Chen Yu , Grillot Kate , Bischoff Eric D. , Cai Ling , Aparicio Anna , Dorow Steven , Arora Vivek , Shao Gang , Qian Jing , Zhao Hong , Yang Guangbin , Cao Chunyan , Sensintaffar John , Wasielewska Teresa , Herbert Mark R. , Bonnefous Celine , Darimont Beatrice , Scher Howard I. , Smith-Jones Peter , Klang Mark , Smith Nicholas D. , De Stanchina Elisa , Wu Nian , Ouerfelli Ouathek , Rix Peter J. , Heyman Richard A. , Jung Michael E. , Sawyers Charles L. , Hager Jeffrey H.
Published: April 2023

PDF file - 312K
Supplementary Table 5 from Leptin and Soluble Leptin Receptor in Risk of Colorectal Cancer in the European Prospective Investigation into Cancer and Nutrition Cohort
Authors: Aleksandrova Krasimira , Boeing Heiner , Jenab Mazda , Bueno-de-Mesquita H. Bas , Jansen Eugene , van Duijnhoven Fränzel J. B. , Rinaldi Sabina , Fedirko Veronika , Romieu Isabelle , Riboli Elio , Gunter Marc J. , Westphal Sabine , Overvad Kim , Tjønneland Anne , Halkjær Jytte , Racine Antoine , Boutron-Ruault Marie-Christine , Clavel-Chapelon Françoise , Kaaks Rudolf , Lukanova Annekatrin , Trichopoulou Antonia , Lagiou Pagona , Trichopoulos Dimitrios , Mattiello Amalia , Pala Valeria , Palli Domenico , Tumino Rosario , Vineis Paolo , Buckland Genevieve , Sánchez María-José , Amiano Pilar , Huerta José María , Barricarte Aurelio , Menéndez Virginia , Peeters Petra H. , Söderberg Stefan , Palmqvist Richard , Allen Naomi E. , Crowe Francesca L. , Khaw Kay-Tee , Wareham Nickolas , Pischon Tobias
Published: April 2023

PDF file - 101K, Relative risks (RR-s) and 95% confidence intervals (CI-s) of colon, rectal and colorectal cancer according to sex-specific quintiles of baseline soluble leptin receptor (sOB-R) concentrations, in men and women, the European Prospective Investigation into Cancer and Nutrition (EPIC), 1992-2003
Supplementary Table 4 from Leptin and Soluble Leptin Receptor in Risk of Colorectal Cancer in the European Prospective Investigation into Cancer and Nutrition Cohort
Authors: Aleksandrova Krasimira , Boeing Heiner , Jenab Mazda , Bueno-de-Mesquita H. Bas , Jansen Eugene , van Duijnhoven Fränzel J. B. , Rinaldi Sabina , Fedirko Veronika , Romieu Isabelle , Riboli Elio , Gunter Marc J. , Westphal Sabine , Overvad Kim , Tjønneland Anne , Halkjær Jytte , Racine Antoine , Boutron-Ruault Marie-Christine , Clavel-Chapelon Françoise , Kaaks Rudolf , Lukanova Annekatrin , Trichopoulou Antonia , Lagiou Pagona , Trichopoulos Dimitrios , Mattiello Amalia , Pala Valeria , Palli Domenico , Tumino Rosario , Vineis Paolo , Buckland Genevieve , Sánchez María-José , Amiano Pilar , Huerta José María , Barricarte Aurelio , Menéndez Virginia , Peeters Petra H. , Söderberg Stefan , Palmqvist Richard , Allen Naomi E. , Crowe Francesca L. , Khaw Kay-Tee , Wareham Nickolas , Pischon Tobias
Published: April 2023

PDF file - 100K, Relative risks (RR-s) and 95% confidence intervals (CI-s) of colon, rectal and colorectal cancer according to sex-specific quintiles of baseline leptin concentrations, in men and women , the European Prospective Investigation into Cancer and Nutrition (EPIC), 1992-2003
Supplementary Table 1 from The MET Oncogene Is a Functional Marker of a Glioblastoma Stem Cell Subtype
Authors: De Bacco Francesca , Casanova Elena , Medico Enzo , Pellegatta Serena , Orzan Francesca , Albano Raffaella , Luraghi Paolo , Reato Gigliola , D'Ambrosio Antonio , Porrati Paola , Patanè Monica , Maderna Emanuela , Pollo Bianca , Comoglio Paolo M. , Finocchiaro Gaetano , Boccaccio Carla
Published: April 2023

XLS file - 12K, Mutations of PTEN, TP53, and NF1 genes in glioblastoma neurospheres
Supplementary Table 5 from Novel Theranostic Opportunities Offered by Characterization of Altered Membrane Lipid Metabolism in Breast Cancer Progression
Authors: Hilvo Mika , Denkert Carsten , Lehtinen Laura , Müller Berit , Brockmöller Scarlet , Seppänen-Laakso Tuulikki , Budczies Jan , Bucher Elmar , Yetukuri Laxman , Castillo Sandra , Berg Emilia , Nygren Heli , Sysi-Aho Marko , Griffin Julian L. , Fiehn Oliver , Loibl Sibylle , Richter-Ehrenstein Christiane , Radke Cornelia , Hyötyläinen Tuulia , Kallioniemi Olli , Iljin Kristiina , Orešič Matej
Published: April 2023

Supplementary Table 5 from Novel Theranostic Opportunities Offered by Characterization of Altered Membrane Lipid Metabolism in Breast Cancer Progression
Supplementary Methods, Table 1, Figure Legends 1-4 from SMYD3 Promotes Cancer Invasion by Epigenetic Upregulation of the Metalloproteinase MMP-9
Authors: Cock-Rada Alicia M. , Medjkane Souhila , Janski Natacha , Yousfi Nadhir , Perichon Martine , Chaussepied Marie , Chluba Johanna , Langsley Gordon , Weitzman Jonathan B.
Published: April 2023

PDF file - 118K
Supplementary Figures 1-4 from SMYD3 Promotes Cancer Invasion by Epigenetic Upregulation of the Metalloproteinase MMP-9
Authors: Cock-Rada Alicia M. , Medjkane Souhila , Janski Natacha , Yousfi Nadhir , Perichon Martine , Chaussepied Marie , Chluba Johanna , Langsley Gordon , Weitzman Jonathan B.
Published: April 2023

PDF file - 958K
Supplementary Figure 4 from Activation of Robo1 Signaling of Breast Cancer Cells by Slit2 from Stromal Fibroblast Restrains Tumorigenesis via Blocking PI3K/Akt/β-Catenin Pathway
Authors: Chang Po-Hao , Hwang-Verslues Wendy W. , Chang Yi-Cheng , Chen Chun-Chin , Hsiao Michael , Jeng Yung-Ming , Chang King-Jen , Lee Eva Y.-H.P. , Shew Jin-Yuh , Lee Wen-Hwa
Published: April 2023

PDF file, 34K, Activated Robo1 by rSlit2 interacted with p85 in BT20 cells.
Supplementary Figure 1 from Histone Methyltransferase KMT1A Restrains Entry of Alveolar Rhabdomyosarcoma Cells into a Myogenic Differentiated State
Authors: Lee Min-Hyung , Jothi Mathivanan , Gudkov Andrei V. , Mal Asoke K.
Published: April 2023

Supplementary Figure 1 from Histone Methyltransferase KMT1A Restrains Entry of Alveolar Rhabdomyosarcoma Cells into a Myogenic Differentiated State
Supplementary Figure Legends 1-4 from Increased CD8+ T-cell Function following Castration and Immunization Is Countered by Parallel Expansion of Regulatory T Cells
Authors: Tang Shuai , Moore Miranda L. , Grayson Jason M. , Dubey Purnima
Published: April 2023

PDF file - 109K
Supplementary Video 2b from Unexpected Dissemination Patterns in Lymphoma Progression Revealed by Serial Imaging within a Murine Lymph Node
Authors: Ito Ken , Smith Bryan Ronain , Parashurama Natesh , Yoon Joon-Kee , Song Si Yeol , Miething Cornelius , Mallick Parag , Lowe Scott , Gambhir Sanjiv Sam
Published: April 2023

MOV file - 1.5MB, Observation of behavior between control mouse and LNIWC implanted mouse (LNIWC mouse):Mouse videos were acquired on day 12 after implantation of either LNIWC or control mouse. No difference in behavior was observed between LNIWC-implanted mice and control mice without the LNIWC.
Supplementary Figure 4 from Increased CD8+ T-cell Function following Castration and Immunization Is Countered by Parallel Expansion of Regulatory T Cells
Authors: Tang Shuai , Moore Miranda L. , Grayson Jason M. , Dubey Purnima
Published: April 2023

PDF file - 941K
Supplementary Figure 2 from Increased CD8+ T-cell Function following Castration and Immunization Is Countered by Parallel Expansion of Regulatory T Cells
Authors: Tang Shuai , Moore Miranda L. , Grayson Jason M. , Dubey Purnima
Published: April 2023

PDF file - 1.6MB
Supplementary Methods from Transcription Factor YY1 Contributes to Tumor Growth by Stabilizing Hypoxia Factor HIF-1α in a p53-Independent Manner
Authors: Wu Shourong , Kasim Vivi , Kano Mitsunobu R. , Tanaka Sayaka , Ohba Shinsuke , Miura Yutaka , Miyata Kanjiro , Liu Xueying , Matsuhashi Ako , Chung Ung-il , Yang Li , Kataoka Kazunori , Nishiyama Nobuhiro , Miyagishi Makoto
Published: April 2023

PDF file - 142K, Contains Luciferase assay, Western blotting, ELISA, Immunoblotting, YY2 gene silencing, Cell viability, Quantitative PCR, and Immunoprecipitation data.
Supplementary Figure 3 from Transcription Factor YY1 Contributes to Tumor Growth by Stabilizing Hypoxia Factor HIF-1α in a p53-Independent Manner
Authors: Wu Shourong , Kasim Vivi , Kano Mitsunobu R. , Tanaka Sayaka , Ohba Shinsuke , Miura Yutaka , Miyata Kanjiro , Liu Xueying , Matsuhashi Ako , Chung Ung-il , Yang Li , Kataoka Kazunori , Nishiyama Nobuhiro , Miyagishi Makoto
Published: April 2023

PDF file - 270K, The proliferation property of HeLa cells, wild type HCT116 (+/+) cells, and p53-null HCT116 (-/-) cells under hypoxic condition
Supplementary Movie 1 from Intravital FLIM-FRET Imaging Reveals Dasatinib-Induced Spatial Control of Src in Pancreatic Cancer
Authors: Nobis Max , McGhee Ewan J. , Morton Jennifer P. , Schwarz Juliane P. , Karim Saadia A. , Quinn Jean , Edward Mike , Campbell Andrew D. , McGarry Lynn C. , Evans T.R. Jeffry , Brunton Valerie G. , Frame Margaret C. , Carragher Neil O. , Wang Yingxiao , Sansom Owen J. , Timpson Paul , Anderson Kurt I.
Published: April 2023

Supplementary Movie 1 - WMV file 4865K, Mutant p53R172H PDACs expressing Src biosensor (green) on organotypic assay with SHG signal from ECM components (purple), interacting with fibroblasts (red) during invasion
Supplementary Methods from Dithiolethiones Inhibit NF-κB Activity via Covalent Modification in Human Estrogen Receptor–Negative Breast Cancer
Authors: Switzer Christopher H. , Cheng Robert Y.-S. , Ridnour Lisa A. , Murray Margaret C. , Tazzari Valerio , Sparatore Anna , Del Soldato Piero , Hines Harry B. , Glynn Sharon A. , Ambs Stefan , Wink David A.
Published: April 2023

PDF file - 125K
Supplementary Figure S1 from Intravital FLIM-FRET Imaging Reveals Dasatinib-Induced Spatial Control of Src in Pancreatic Cancer
Authors: Nobis Max , McGhee Ewan J. , Morton Jennifer P. , Schwarz Juliane P. , Karim Saadia A. , Quinn Jean , Edward Mike , Campbell Andrew D. , McGarry Lynn C. , Evans T.R. Jeffry , Brunton Valerie G. , Frame Margaret C. , Carragher Neil O. , Wang Yingxiao , Sansom Owen J. , Timpson Paul , Anderson Kurt I.
Published: April 2023

Supplementary Figure S1 - PDF file 273K, Characterization of the Src-biosensor in vitro
Supplementary Figure 6 from An Integrated Genomic Screen Identifies LDHB as an Essential Gene for Triple-Negative Breast Cancer
Authors: McCleland Mark L. , Adler Adam S. , Shang Yonglei , Hunsaker Thomas , Truong Tom , Peterson David , Torres Eric , Li Li , Haley Benjamin , Stephan Jean-Philippe , Belvin Marcia , Hatzivassiliou Georgia , Blackwood Elizabeth M. , Corson Laura , Evangelista Marie , Zha Jiping , Firestein Ron
Published: April 2023

PDF file - 6626K, Validation of IHC antibody specificity for LDHB, LDHA, MCT1, and MCT4
Supplementary Figure 5 from An Integrated Genomic Screen Identifies LDHB as an Essential Gene for Triple-Negative Breast Cancer
Authors: McCleland Mark L. , Adler Adam S. , Shang Yonglei , Hunsaker Thomas , Truong Tom , Peterson David , Torres Eric , Li Li , Haley Benjamin , Stephan Jean-Philippe , Belvin Marcia , Hatzivassiliou Georgia , Blackwood Elizabeth M. , Corson Laura , Evangelista Marie , Zha Jiping , Firestein Ron
Published: April 2023

PDF file - 791K, mRNA expression profiles of lactate dehydrogenase enzymes in breast cancer subtypes
Supplementary Figure 4 from An Integrated Genomic Screen Identifies LDHB as an Essential Gene for Triple-Negative Breast Cancer
Authors: McCleland Mark L. , Adler Adam S. , Shang Yonglei , Hunsaker Thomas , Truong Tom , Peterson David , Torres Eric , Li Li , Haley Benjamin , Stephan Jean-Philippe , Belvin Marcia , Hatzivassiliou Georgia , Blackwood Elizabeth M. , Corson Laura , Evangelista Marie , Zha Jiping , Firestein Ron
Published: April 2023

PDF file - 663K, Glycolysis signature genes that correlate to LDHB expression in basal-like tumors
Supplementary Figure 3 from An Integrated Genomic Screen Identifies LDHB as an Essential Gene for Triple-Negative Breast Cancer
Authors: McCleland Mark L. , Adler Adam S. , Shang Yonglei , Hunsaker Thomas , Truong Tom , Peterson David , Torres Eric , Li Li , Haley Benjamin , Stephan Jean-Philippe , Belvin Marcia , Hatzivassiliou Georgia , Blackwood Elizabeth M. , Corson Laura , Evangelista Marie , Zha Jiping , Firestein Ron
Published: April 2023

PDF file - 1026K, LDHA levels do not fluctuate after LDHB knockdown
Supplementary Legends for Table 1 and Figures 1-5 from Real-time Monitoring of In Vivo Acute Necrotic Cancer Cell Death Induced by Near Infrared Photoimmunotherapy Using Fluorescence Lifetime Imaging
Authors: Nakajima Takahito , Sano Kohei , Mitsunaga Makoto , Choyke Peter L. , Kobayashi Hisataka
Published: April 2023

PDF file - 95K
Supplementary Table 1 from Novel MT1-MMP Small-Molecule Inhibitors Based on Insights into Hemopexin Domain Function in Tumor Growth
Authors: Remacle Albert G. , Golubkov Vladislav S. , Shiryaev Sergey A. , Dahl Russell , Stebbins John L. , Chernov Andrei V. , Cheltsov Anton V. , Pellecchia Maurizio , Strongin Alex Y.
Published: April 2023

PDF file - 69K
Supplementary Figures 1-2 from Intratracheal Administration of a Nanoparticle-Based Therapy with the Angiotensin II Type 2 Receptor Gene Attenuates Lung Cancer Growth
Authors: Kawabata Atsushi , Baoum Abdulgader , Ohta Naomi , Jacquez Stephanie , Seo Gwi-Moon , Berkland Cory , Tamura Masaaki
Published: April 2023

PDF file - 100K
Supplementary Figure 3 from Real-time Monitoring of In Vivo Acute Necrotic Cancer Cell Death Induced by Near Infrared Photoimmunotherapy Using Fluorescence Lifetime Imaging
Authors: Nakajima Takahito , Sano Kohei , Mitsunaga Makoto , Choyke Peter L. , Kobayashi Hisataka
Published: April 2023

PDF file - 62K, MCF7 HER2 cells but not its isogenic MCF7 NEO controls are susceptible to the PARP inhibitors ABT-888 and AZD-2281
Supplementary Figure 3 from Chromatin Remodeling Underlies the Senescence-Associated Secretory Phenotype of Tumor Stromal Fibroblasts That Supports Cancer Progression
Authors: Pazolli Ermira , Alspach Elise , Milczarek Agnieszka , Prior Julie , Piwnica-Worms David , Stewart Sheila A.
Published: April 2023

PDF file - 435K
Supplementary Figure Legends 1-4, Tables 1-3 from The Mixed Lineage Leukemia (MLL) Fusion–Associated Gene AF4 Promotes CD133 Transcription
Authors: Mak Anthony B. , Nixon Allison M.L. , Moffat Jason
Published: April 2023

PDF file - 97K
Supplementary Figure 1 from Chromatin Remodeling Underlies the Senescence-Associated Secretory Phenotype of Tumor Stromal Fibroblasts That Supports Cancer Progression
Authors: Pazolli Ermira , Alspach Elise , Milczarek Agnieszka , Prior Julie , Piwnica-Worms David , Stewart Sheila A.
Published: April 2023

PDF file - 2.4MB
Supplementary Table 7 from DNA Methylation Biomarkers Offer Improved Diagnostic Efficiency in Lung Cancer
Authors: Nikolaidis Georgios , Raji Olaide Y. , Markopoulou Soultana , Gosney John R. , Bryan Julie , Warburton Chris , Walshaw Martin , Sheard John , Field John K. , Liloglou Triantafillos
Published: April 2023

PDF file - 30K, mSHOX2 positivity in LLP panel subgroups (236 common samples between two studies).
Supplementary Table 1 from Molecular Signature of Smoking in Human Lung Tissues
Authors: Bossé Yohan , Postma Dirkje S. , Sin Don D. , Lamontagne Maxime , Couture Christian , Gaudreault Nathalie , Joubert Philippe , Wong Vivien , Elliott Mark , van den Berge Maarten , Brandsma Corry A. , Tribouley Catherine , Malkov Vladislav , Tsou Jeffrey A. , Opiteck Gregory J. , Hogg James C. , Sandford Andrew J. , Timens Wim , Paré Peter D. , Laviolette Michel
Published: April 2023

PDF file - 589K, Probe sets significantly associated with smoking in the discovery set
Supplementary Figure 1 from Inhibiting Interactions of Lysine Demethylase LSD1 with Snail/Slug Blocks Cancer Cell Invasion
Authors: Ferrari-Amorotti Giovanna , Fragliasso Valentina , Esteki Roza , Prudente Zelia , Soliera Angela Rachele , Cattelani Sara , Manzotti Gloria , Grisendi Giulia , Dominici Massimo , Pieraccioli Marco , Raschellà Giuseppe , Chiodoni Claudia , Colombo Mario Paolo , Calabretta Bruno
Published: April 2023

PDF file - 4.7MB, Effect of Parnate on migration, invasion and proliferation of p53-null HCT116 cells
Supplementary Figure S2 from Hypoxia Triggers Hedgehog-Mediated Tumor–Stromal Interactions in Pancreatic Cancer
Authors: Spivak-Kroizman Taly R. , Hostetter Galen , Posner Richard , Aziz Meraj , Hu Chengcheng , Demeure Michael J. , Von Hoff Daniel , Hingorani Sunil R. , Palculict Timothy B. , Izzo Julie , Kiriakova Galina M. , Abdelmelek Mena , Bartholomeusz Geoffrey , James Brian P. , Powis Garth
Published: April 2023

Figure S2 - PDF file 2023K, IHC images for HIF-1� and SHH in patient matched tumor TMA cores
Supplementary Table 4 from An Integrated Genome-Wide Approach to Discover Tumor-Specific Antigens as Potential Immunologic and Clinical Targets in Cancer
Authors: Xu Qing-Wen , Zhao Wei , Wang Yue , Sartor Maureen A. , Han Dong-Mei , Deng Jixin , Ponnala Rakesh , Yang Jiang-Ying , Zhang Qing-Yun , Liao Guo-Qing , Qu Yi-Mei , Li Lu , Liu Fang-Fang , Zhao Hong-Mei , Yin Yan-Hui , Chen Wei-Feng , Zhang Yu , Wang Xiao-Song
Published: April 2023

PDF file - 98K, The detailed information and RT-PCR validation results for the TSA candidates nominated by HEPA analysis
Supplementary Figure Legends from Hypoxia Triggers Hedgehog-Mediated Tumor–Stromal Interactions in Pancreatic Cancer
Authors: Spivak-Kroizman Taly R. , Hostetter Galen , Posner Richard , Aziz Meraj , Hu Chengcheng , Demeure Michael J. , Von Hoff Daniel , Hingorani Sunil R. , Palculict Timothy B. , Izzo Julie , Kiriakova Galina M. , Abdelmelek Mena , Bartholomeusz Geoffrey , James Brian P. , Powis Garth
Published: April 2023

Supplementary Figure Legends - PDF file 90K, Figure legends for Supplementary Material
Figures S3 to S7 and Tables S1 and S2 from Hypoxia Triggers Hedgehog-Mediated Tumor–Stromal Interactions in Pancreatic Cancer
Authors: Spivak-Kroizman Taly R. , Hostetter Galen , Posner Richard , Aziz Meraj , Hu Chengcheng , Demeure Michael J. , Von Hoff Daniel , Hingorani Sunil R. , Palculict Timothy B. , Izzo Julie , Kiriakova Galina M. , Abdelmelek Mena , Bartholomeusz Geoffrey , James Brian P. , Powis Garth
Published: April 2023

Figures S3 to S7 and Tables S1 and S2 - PDF file 532K, S3 Kaplan-Meier patient survival analyses reveals no correlation between survival and PTCH levels. S4 Survival plots based on the univariate table S5 Increased expression of SHH during hypoxia in pancreatic cancer cell lines. S6 A HIF1-�- and SHH-dependent activation of hedgehog signaling in fibroblasts grown in 3D co-cultures with Panc-1 cells. S7, SHH formation by pancreatic cancer cells in hypoxia is mediating the desmoplastic reaction in fibroblasts Table S1 Univariate table showing that high histologic grade Table S2 A pathway array profiling the expression of genes involved in hedgehog signaling in MiaPaca 2 cells transfected with shHIF-1� in normoxia and hypoxia
Supplementary Table 2 from An Integrated Genome-Wide Approach to Discover Tumor-Specific Antigens as Potential Immunologic and Clinical Targets in Cancer
Authors: Xu Qing-Wen , Zhao Wei , Wang Yue , Sartor Maureen A. , Han Dong-Mei , Deng Jixin , Ponnala Rakesh , Yang Jiang-Ying , Zhang Qing-Yun , Liao Guo-Qing , Qu Yi-Mei , Li Lu , Liu Fang-Fang , Zhao Hong-Mei , Yin Yan-Hui , Chen Wei-Feng , Zhang Yu , Wang Xiao-Song
Published: April 2023

PDF file - 41K, The weights for normal adult somatic tissues for the calculation of Depreciatory Penalty score
Supplementary Table 1 from An Integrated Genome-Wide Approach to Discover Tumor-Specific Antigens as Potential Immunologic and Clinical Targets in Cancer
Authors: Xu Qing-Wen , Zhao Wei , Wang Yue , Sartor Maureen A. , Han Dong-Mei , Deng Jixin , Ponnala Rakesh , Yang Jiang-Ying , Zhang Qing-Yun , Liao Guo-Qing , Qu Yi-Mei , Li Lu , Liu Fang-Fang , Zhao Hong-Mei , Yin Yan-Hui , Chen Wei-Feng , Zhang Yu , Wang Xiao-Song
Published: April 2023

PDF file - 66K, Detailed information for the adult somatic tissues and cancer tissues from the five Affymetrix U133 plus2 gene expression datasets compiled for HEPA analysis
Supplementary Figure 2 from A Retinoic Acid—Rich Tumor Microenvironment Provides Clonal Survival Cues for Tumor-Specific CD8+ T Cells
Authors: Guo Yanxia , Pino-Lagos Karina , Ahonen Cory A. , Bennett Kathy A. , Wang Jinshan , Napoli Joseph L. , Blomhoff Rune , Sockanathan Shanthini , Chandraratna Roshantha A. , Dmitrovsky Ethan , Turk Mary Jo , Noelle Randolph J.
Published: April 2023

PDF file - 328K, Deficient CD8+ T cell expansion in response to OVA, alpha-CD40 and pI:C immunization in dnRARalphaCD4Cre mice is independent of CD4+ T cells
Supplementary Figures 1-5 from An Integrated Genome-Wide Approach to Discover Tumor-Specific Antigens as Potential Immunologic and Clinical Targets in Cancer
Authors: Xu Qing-Wen , Zhao Wei , Wang Yue , Sartor Maureen A. , Han Dong-Mei , Deng Jixin , Ponnala Rakesh , Yang Jiang-Ying , Zhang Qing-Yun , Liao Guo-Qing , Qu Yi-Mei , Li Lu , Liu Fang-Fang , Zhao Hong-Mei , Yin Yan-Hui , Chen Wei-Feng , Zhang Yu , Wang Xiao-Song
Published: April 2023

PDF file - 504K, 1) The principle and algorithm of HEPA analysis; 2) The parameters of HEPA analysis; 3) The HEPA score and expression profile of the TSA genes identified in this study; 4) Comparing PARSE and ELISA assay using IGF2BP3 antigen, and detecting autoantibody responses in an independent cohort of 149 lung cancer patients and 123 healthy individuals with PARSE assay; 5) The application of HEPA analysis in discovering therapeutically relevant overexpressed antigens
Supplementary Figure 1 from A Retinoic Acid—Rich Tumor Microenvironment Provides Clonal Survival Cues for Tumor-Specific CD8+ T Cells
Authors: Guo Yanxia , Pino-Lagos Karina , Ahonen Cory A. , Bennett Kathy A. , Wang Jinshan , Napoli Joseph L. , Blomhoff Rune , Sockanathan Shanthini , Chandraratna Roshantha A. , Dmitrovsky Ethan , Turk Mary Jo , Noelle Randolph J.
Published: April 2023

PDF file - 508K, Overexpression of dnRARalpha in CD8+ T cells renders CD8+ T cell unresponsive to RA in vitro
Supplementary Tables 1-7 from Methylome Profiling Reveals Distinct Alterations in Phenotypic and Mutational Subgroups of Myeloproliferative Neoplasms
Authors: Nischal Sangeeta , Bhattacharyya Sanchari , Christopeit Maximilian , Yu Yiting , Zhou Li , Bhagat Tushar D. , Sohal Davendra , Will Britta , Mo Yongkai , Suzuki Masako , Pardanani Animesh , McDevitt Michael , Maciejewski Jaroslaw P. , Melnick Ari M. , Greally John M. , Steidl Ulrich , Moliterno Alison , Verma Amit
Published: April 2023

PDF file - 846K, Supplementary Table 1: Genes hypermethylated in PV / ET Supplementary Table 2: Genes hypermethylated in PMF Supplementary Table 3: Genes hypomethylated in PMF Supplementary Table 4: Genes hypermethylated in PMF cases with ASXL1 mutations / deletions Supp Table 5: Biological pathways affected by hypermethylated genes in ASXL1 mutated/deleted cases of PMF Supplementary Table 6: Genes hypermethylated in MPN cases with TET2 mutations Supp Table 7: Biological pathways affected by hypermethylated genes in TET2 mutated cases of MPNs
Supplementary Methods from Cisplatin Selects for Multidrug-Resistant CD133+ Cells in Lung Adenocarcinoma by Activating Notch Signaling
Authors: Liu Yu-Peng , Yang Chih-Jen , Huang Ming-Shyan , Yeh Chi-Tai , Wu Alexander T.H. , Lee Yu-Cheng , Lai Tsung-Ching , Lee Chien-Hsin , Hsiao Ya-Wen , Lu Jean , Shen Chia-Ning , Lu Pei-Jung , Hsiao Michael
Published: April 2023

PDF file - 143K
Supplementary Tables 1-3 from Identification of a Molecular Signature Underlying Inhibition of Mammary Carcinoma Growth by Dietary N-3 Fatty Acids
Authors: Jiang Weiqin , Zhu Zongjian , McGinley John N. , El Bayoumy Karam , Manni Andrea , Thompson Henry J.
Published: April 2023

PDF file - 59K, Table S1. Measured omega-3 and omega-6 content in experimental diet. Table S2. Effect of dietary omega-3 to omega-6 ratio on carcinogenic response in the mammary gland. Table S3. Summary of orthogonal projections to latent structures-discriminant analysis models.
Supplementary Figures 1-8 from Identification of a Molecular Signature Underlying Inhibition of Mammary Carcinoma Growth by Dietary N-3 Fatty Acids
Authors: Jiang Weiqin , Zhu Zongjian , McGinley John N. , El Bayoumy Karam , Manni Andrea , Thompson Henry J.
Published: April 2023

PDF file - 5MB, Supplemental figures 1-8 include representative photomicrographs illustrating Ki-67 immunohistochemical staining and use of H&E stained sections for the detection of apoptosis. Also included are images of western blots and multivariate discriminant analysis for lipid metabolism, transcription factors, cell proliferation, and apoptosis in mammary carcinomas.
Supplementary Figure 5 from Cisplatin Selects for Multidrug-Resistant CD133+ Cells in Lung Adenocarcinoma by Activating Notch Signaling
Authors: Liu Yu-Peng , Yang Chih-Jen , Huang Ming-Shyan , Yeh Chi-Tai , Wu Alexander T.H. , Lee Yu-Cheng , Lai Tsung-Ching , Lee Chien-Hsin , Hsiao Ya-Wen , Lu Jean , Shen Chia-Ning , Lu Pei-Jung , Hsiao Michael
Published: April 2023

PDF file - 255K, The role of ABC transporters in cisplatin-induced multi-drug resistance to paclitaxol in H460 and H661 cell lines
Supplementary Results, Methods and Materials from Roles for Endothelin Receptor B and BCL2A1 in Spontaneous CNS Metastasis of Melanoma
Authors: Cruz-Muñoz William , Jaramillo Maria L. , Man Shan , Xu Ping , Banville Myriam , Collins Catherine , Nantel Andre , Francia Giulio , Morgan Sherif S. , Cranmer Lee D. , O'Connor-McCourt Maureen D. , Kerbel Robert S.
Published: April 2023

PDF file - 106K
Supplementary Figure 7 from Roles for Endothelin Receptor B and BCL2A1 in Spontaneous CNS Metastasis of Melanoma
Authors: Cruz-Muñoz William , Jaramillo Maria L. , Man Shan , Xu Ping , Banville Myriam , Collins Catherine , Nantel Andre , Francia Giulio , Morgan Sherif S. , Cranmer Lee D. , O'Connor-McCourt Maureen D. , Kerbel Robert S.
Published: April 2023

PDF file - 37K, Role of EDNRB in melanoma cell proliferation and intracranial melanoma growth
Supplementary Figure 3 from Roles for Endothelin Receptor B and BCL2A1 in Spontaneous CNS Metastasis of Melanoma
Authors: Cruz-Muñoz William , Jaramillo Maria L. , Man Shan , Xu Ping , Banville Myriam , Collins Catherine , Nantel Andre , Francia Giulio , Morgan Sherif S. , Cranmer Lee D. , O'Connor-McCourt Maureen D. , Kerbel Robert S.
Published: April 2023

PDF file - 26K, QRT-PCR examination of levels of expression of additional genes highlighted by microarray analysis
Supplementary Figure 3 from Molecular Subsets of Mantle Cell Lymphoma Defined by the IGHV Mutational Status and SOX11 Expression Have Distinct Biologic and Clinical Features
Authors: Navarro Alba , Clot Guillem , Royo Cristina , Jares Pedro , Hadzidimitriou Anastasia , Agathangelidis Andreas , Bikos Vasilis , Darzentas Nikos , Papadaki Theodora , Salaverria Itziar , Pinyol Magda , Puig Xavier , Palomero Jara , Vegliante Maria Carmela , Amador Virgina , Martinez-Trillos Alejandra , Stefancikova Lenka , Wiestner Adrian , Wilson Wyndham , Pott Christiane , Calasanz Maria Jose , Trim Nicola , Erber Wendy , Sander Birgitta , Ott German , Rosenwald Andreas , Colomer Dolors , Giné Eva , Siebert Reiner , Lopez-Guillermo Armando , Stamatopoulos Kostas , Beà Sílvia , Campo Elías
Published: April 2023

PDF file - 332K, Determination of the best cut-off for the percentage of identity of IGHV gene in relation to overall survival. Two cut-offs, 96.6 and 97%, were selected according to a maximally log-rank statistic
Supplementary Figure 2 from Molecular Subsets of Mantle Cell Lymphoma Defined by the IGHV Mutational Status and SOX11 Expression Have Distinct Biologic and Clinical Features
Authors: Navarro Alba , Clot Guillem , Royo Cristina , Jares Pedro , Hadzidimitriou Anastasia , Agathangelidis Andreas , Bikos Vasilis , Darzentas Nikos , Papadaki Theodora , Salaverria Itziar , Pinyol Magda , Puig Xavier , Palomero Jara , Vegliante Maria Carmela , Amador Virgina , Martinez-Trillos Alejandra , Stefancikova Lenka , Wiestner Adrian , Wilson Wyndham , Pott Christiane , Calasanz Maria Jose , Trim Nicola , Erber Wendy , Sander Birgitta , Ott German , Rosenwald Andreas , Colomer Dolors , Giné Eva , Siebert Reiner , Lopez-Guillermo Armando , Stamatopoulos Kostas , Beà Sílvia , Campo Elías
Published: April 2023

PDF file - 198K, Recurrent mutations in rearrangements utilizing the six most frequent IGHV genes. Individual codons are represented in the X-axis. Each color represents a different amino acid (AA) change. CDR: complementary determining region, FR: framework region
Supplementary Table 4 from Detection of Redundant Fusion Transcripts as Biomarkers or Disease-Specific Therapeutic Targets in Breast Cancer
Authors: Asmann Yan W. , Necela Brian M. , Kalari Krishna R. , Hossain Asif , Baker Tiffany R. , Carr Jennifer M. , Davis Caroline , Getz Julie E. , Hostetter Galen , Li Xing , McLaughlin Sarah A. , Radisky Derek C. , Schroth Gary P. , Cunliffe Heather E. , Perez Edith A. , Thompson E. Aubrey
Published: April 2023

Supplementary Table 4 from Detection of Redundant Fusion Transcripts as Biomarkers or Disease-Specific Therapeutic Targets in Breast Cancer
Supplementary Figure 6 from Galectin-3 Contributes to Melanoma Growth and Metastasis via Regulation of NFAT1 and Autotaxin
Authors: Braeuer Russell R. , Zigler Maya , Kamiya Takafumi , Dobroff Andrey S. , Huang Li , Choi Woonyoung , McConkey David J. , Shoshan Einav , Mobley Aaron K. , Song Renduo , Raz Avraham , Bar-Eli Menashe
Published: April 2023

PDF file, 1706K, Expression status of LPA receptors in SB-2, WM2664, and A375SM melanoma cells.