bluuebunny/crossref_metadata_2025 huggingface dataset:
Eastern Mediterranean biogeochemical flux model – Simulations of the pelagic ecosystem
Authors: Petihakis G. , Triantafyllou G. , Tsiaras K. , Korres G. , Pollani A. , Hoteit I.
Published: April 2010

Abstract. During the second phase (2003–2006) of the Mediterranean ocean Forecasting System Project (MFS) named Toward Environmental Predictions (MFSTEP) one of the three major aims was the development of numerical forecasting systems. In this context a generic Biogeochemical Flux Model (BFM) was developed and coupled with hydrodynamic models already operating at basin scale as well as in regional areas. In the Eastern Mediterranean basin the BFM was coupled with the Aegean Levantine Eddy Resolving MOdel (ALERMO). The BFM is a generic highly complex model based on ERSEM and although a detailed description of the model and its components is beyond the scope of this work, a short overview of the main processes, laying emphasis on the parameter values used is presented. In addition the performance of the model is evaluated with some preliminary results being qualitatively compared against field observations. The model in its present form is rather promising and reproduces all important major features although there are some slight inefficiencies mostly related to primary and bacterial productivity rates.
On the porosity of barrier layers
Authors: Mignot J. , de Boyer Montégut C. , Tomczak M.
Published: April 2010

Abstract. Barrier layers are defined as the layer between the pycnocline and the thermocline when the latter are different as a result of salinity stratification. We present a revisited 2-degree resolution global climatology of monthly mean oceanic Barrier Layer (BL) thickness first proposed by de Boyer Montégut et al. (2007). In addition to using an extended data set, we present a modified computation method that addresses the observed porosity of BLs. We name porosity the fact that barrier layers distribution can, in some areas, be very uneven regarding the space and time scales that are considered. This implies an intermittent alteration of air-sea exchanges by the BL. Therefore, it may have important consequences for the climatic impact of BLs. Differences between the two computation methods are small for robust BLs that are formed by large-scale processes. However, the former approach can significantly underestimate the thickness of short and/or localized barrier layers. This is especially the case for barrier layers formed by mesoscale mechanisms (under the intertropical convergence zone for example and along western boundary currents) and equatorward of the sea surface salinity subtropical maxima. Complete characterisation of regional BL dynamics therefore requires a description of the robustness of BL distribution to assess the overall impact of BLs on the process of heat exchange between the ocean interior and the atmosphere.
Enhancing temporal correlations in EOF expansions for the reconstruction of missing data using DINEOF
Authors: Alvera-Azcárate A. , Barth A. , Sirjacobs D. , Beckers J.-M.
Published: April 2010

Abstract. DINEOF (Data Interpolating Empirical Orthogonal Functions) is an EOF-based technique for the reconstruction of missing data in geophysical fields, such as those produced by clouds in sea surface temperature satellite images. A technique to reduce spurious time variability in DINEOF reconstructions is presented. The reconstruction of these images within a long time series using DINEOF can lead to large discontinuities in the reconstruction. Filtering the temporal covariance matrix allows to reduce this spurious variability and therefore more realistic reconstructions are obtained. The approach is tested in a three years sea surface temperature data set over the Black Sea. The effect of the filter in the temporal EOFs is presented, as well as some examples of the improvement achieved with the filtering in the SST reconstruction, both compared to the DINEOF approach without filtering.
Application of the Gaussian anamorphosis to assimilation in a 3-D coupled physical-ecosystem model of the North Atlantic with the EnKF: a twin experiment
Authors: Simon E. , Bertino L.
Published: April 2010

Abstract. We consider the application of the Ensemble Kalman Filter (EnKF) to a coupled ocean ecosystem model (HYCOM-NORWECOM). Such models, especially the ecosystem models, are characterized by strongly non-linear interactions active in ocean blooms and present important difficulties for the use of data assimilation methods based on linear statistical analysis. Besides the non-linearity of the model, one is confronted with the model constraints, the analysis state having to be consistent with the model, especially with respect to the constraints that some of the variables have to be positive. Furthermore the non-Gaussian distributions of the biogeochemical variables break an important assumption of the linear analysis, leading to a loss of optimality of the filter. We present an extension of the EnKF dealing with these difficulties by introducing a non-linear change of variables (anamorphosis function) in order to execute the analysis step in a Gaussian space, namely a space where the distributions of the transformed variables are Gaussian. We present also the initial results of the application of this non-Gaussian extension of the EnKF to the assimilation of simulated chlorophyll surface concentration data in a North Atlantic configuration of the HYCOM-NORWECOM coupled model.
Sensors and instruments for oceanic dissolved carbon measurements
Authors: Schuster U. , Hannides A. , Mintrop L. , Körtzinger A.
Published: April 2010

Abstract. Highly accurate and precise measurements of marine carbon components are required in the study of the marine carbon cycle, particularly when investigating the causes for its variability from seasonal to interannual timescales. This is especially true in the investigation of the consequences of anthropogenic influences. The analysis of any marine carbon component requires elaborate instrumentation, most of which is currently used onboard ships, either in manual or automated mode. Technological developments result in more and more instruments that have sufficient long-term reliability so that they can be deployed on commercial ships, surface moorings, and buoys, whilst the great technological and operational challenges mean that only few sensors have been developed that can be used for sub-surface in situ measurements on floats, robots, or gliders. There is a special need for autonomous instruments and sensors that are able to measure a combination of different components, in order to increase the spatial and temporal coverage of marine carbon data. This paper describes analytical techniques used for the measurement of the marine dissolved carbon components, both inorganic and organic: the fugacity of CO2, total dissolved inorganic carbon, pH, alkalinity, and dissolved organic carbon. By pointing out advantages, disadvantages, and/or challenges of the techniques employed in the analysis of each component, we aim to aid non-carbon marine scientists, sensor developers and technologists, in the decision of which challenges to address in further development.
On the multiple time scales of variability in the Northeast Pacific Ocean
Authors: Tokmakian R.
Published: April 2010

Abstract. The spatial and temporal sea surface height energy distribution of the Northeast Pacific Ocean is described and discussed. Using an altimetric data set covering 15 years (1993–2007), the energy within the 3–9 month band is primarily located within 10° of the coast. In the Gulf of Alaska, this energy signal is on the shelf, while further south, west of the California/Oregon coast, the significant energy in this band is west of the shelf break. In both cases, it is primarily forced by the local wind. Within the 2–3 year band, the signal reflects energy generated by local changes to the wind stress from large atmospheric shifts indicated by the Pacific North American Index and by advective or propagating processes related to El Niño-Southern Oscillation. Over the two 4–6 year periods within this data set, the change is primarily due to the large scale shift in atmospheric systems north of about 30° N which also affect changes in current strengths. Based on the distribution of the energy signal and its variability, a set of three winter-time indices are suggested to characterize the distinct differences in the SSH anomalies in these areas.
A review of the role of submarine canyons in deep-ocean exchange with the shelf
Authors: Allen S. E. , Durrieu de Madron X.
Published: April 2010

Abstract. Cross shelf-break exchange is limited by the tendency of geostrophic flow to follow bathymetric contours, not cross them. However, small scale topography, such as canyons, can reduce the local lengthscale of the flow and increase the local Rossby number. These higher Rossby numbers mean the flow is no longer purely geostrophic and significant cross-isobath flow can occur. This cross-isobath flow includes both upwelling and downwelling due to wind-driven shelf currents and the strong cascading flows of dense shelf-water into the ocean. Tidal currents usually run primarily parallel to the shelf-break topography. Canyons cut across these flows and thus are often regions of generation of strong baroclinic tides and internal waves. Canyons can also focus internal waves. Both processes lead to greatly elevated levels of mixing. Thus, through both advection and mixing processes, canyons can enhance Deep Ocean Shelf Exchange. Here we review the state of the science describing the dynamics of the flows and suggest further areas of research, particularly into quantifying fluxes of nutrients and carbon as well as heat and salt through canyons.
Impact of data assimilation of physical variables on the spring bloom from TOPAZ operational runs in the North Atlantic
Authors: Samuelsen A. , Bertino L. , Hansen C.
Published: April 2010

Abstract. A reanalysis of the North Atlantic spring bloom in 2007 was produced using the real-time analysis from the TOPAZ North Atlantic and Arctic forecasting system. The TOPAZ system uses a hybrid coordinate general circulation ocean model and assimilates physical observations: sea surface anomalies, sea surface temperatures, and sea-ice concentrations using the Ensemble Kalman Filter. This ocean model was coupled to an ecosystem model, NORWECOM (Norwegian Ecological Model System), and the TOPAZ-NORWECOM coupled model was run throughout the spring and summer of 2007. The ecosystem model was run online, restarting from analyzed physical fields (result after data assimilation) every 7 days. Biological variables were not assimilated in the model. The main purpose of the study was to investigate the impact of physical data assimilation on the ecosystem model. This was determined by comparing the results to those from a model without assimilation of physical data. The regions of focus are the North Atlantic and the Arctic Ocean. Assimilation of physical variables does not affect the results from the ecosystem model significantly. The differences between the weekly mean values of chlorophyll are normally within 5–10% during the summer months, and the maximum difference of ~20% occurs in the Arctic, also during summer. Special attention was paid to the nutrient input from the North Atlantic to the Nordic Seas and the impact of ice-assimilation on the ecosystem. The ice-assimilation increased the phytoplankton concentration: because there was less ice in the assimilation run, this increased both the mixing of nutrients during winter and the area where production could occur during summer. The forecast was also compared to remotely sensed chlorophyll, climatological nutrients, and in-situ data. The results show that the model reproduces a realistic annual cycle, but the chlorophyll concentrations tend to be between 0.1 and 1.0 mg chla/m3 too low during winter and spring and 1–2 mg chla/m3 too high during summer. Surface nutrients on the other hand are generally lower than the climatology throughout the year.
Carbon export and sequestration in the southern Benguela upwelling system: lower and upper estimates
Authors: Waldron H. N. , Monteiro P. M. S. , Swart N. C.
Published: April 2010

Abstract. Three independent studies of carbon export and sequestration in the southern Benguela upwelling system are presented. They were undertaken by Waldron (upwelling index), Monteiro (discrete upwelling centres – gate hypothesis model) and Swart (cross-shelf advection in bottom nelpheloid layers). The annual estimates were, 3.9×1013, 0.72×1013 and 8.6×1011 gC, respectively. The lowest estimate was derived from a consideration of low frequency lateral carbon export in the bottom nepheloid layer and was thought likely to be an under-estimate. Taking into account high frequency episodic events, intermediate nepheloid layers and along isopycnal export of DOC at surface and intermediate depths was thought likely to result in a substantial upward revision. The remaining two estimates were considered to be an upper and lower estimate of carbon export and sequestration due to factors inherent in the methodologies. The upper estimate presents a two-dimensional system, integrated alongshore; the lower estimate sums a series of upwelling centres in order to obtain a system flux. The former is therefore a uniform extrapolation along the coast while the latter omits upwelling between the upwelling centres.
Surface expression of Mediterranean Water dipoles and their contribution to the shelf/slope – open ocean exchange
Authors: Serra N. , Ambar I. , Boutov D.
Published: April 2010

Abstract. The generation of dipolar eddies within the Mediterranean Water (MW) layers, at the Portuguese continental slope, was observed using subsurface RAFOS floats. The surface expression of these mid-depth dipoles is here characterized with remote sensing data, namely with sea surface temperature, chlorophyll concentration and sea surface height measurements. Two cases are presented demonstrating the remote detection of these underwater structures in the Gulf of Cadiz during 1998 and 2001. The presence of subsurface MW dipoles in the Iberian coastal zone is shown to influence the development of coastal upwelling filaments. The surface circulation induced by the dipoles causes the upwelling filaments to extend offshorewards and thus to enhance the transport of physical, chemical and biological properties into the open ocean. A numerical model simulation of the ocean circulation around the Iberian Peninsula forced by heat and freshwater fluxes (computed using the NCEP reanalysis atmospheric state) and by the overflow of MW at the Strait of Gibraltar, corroborates the connection between the surface and the mid-depth flows. The high-resolution numerical experiment is used to help clarifying the occurrence of the MW dipoles surface expression and the impact of these dipoles on the eddy kinetic energy of the upper ocean and on the exchange of volume and salt between the shelf/slope and the open ocean.
On contribution of horizontal and intra-layer convection to the formation of the Baltic Sea cold intermediate layer
Authors: Chubarenko I. , Demchenko N.
Published: April 2010

Abstract. Seasonal cascades down the coastal slopes and intra-layer convection are considered as the two additional mechanisms contributing to the Baltic Sea cold intermediate layer (CIL) formation along with conventional seasonal vertical mixing. Field measurements are presented, reporting for the first time the possibility of denser water formation and cascading from the Baltic Sea underwater slopes, which take place under fall and winter cooling conditions and deliver waters into intermediate layer of salinity stratified deep-sea area. The presence in spring within the CIL of water with temperature below that of maximum density (Tmd) and that at the local surface in winter time allows tracing its formation: it is argued that the source of the coldest waters of the Baltic CIL is early spring (March–April) cascading, arising due to heating of water before reaching the Tmd. Fast increase of the open water heat content during further spring heating indicates that horizontal exchange rather than direct solar heating is responsible for that. When the surface is covered with water, heated above the Tmd, the conditions within the CIL become favorable for intralayer convection due to the presence of waters of Tmd in intermediate layer, which can explain its well-known features – the observed increase of its salinity and deepening with time.
Entrainment in the Denmark Strait overflow plume by meso-scale eddies
Authors: Voet G. , Quadfasel D.
Published: April 2010

Abstract. The entrainment of buoyant ambient water into the overflow plume of Denmark Strait and the associated downstream warming of the plume are estimated using time series of currents and temperature from moored instrumentation and classical hydrographic data. Warming rates are highest (0.4–0.5 K/100 km) within the first 200 km of the sill, and decrease to 0.05–0.1 K/100 km further downstream. Stirring by mesoscale eddies causes lateral heat fluxes that explain the 0.1 K/100 km warming, but in the first 200 km from the sill also vertical diapycnal fluxes, probably caused by breaking internal waves, must contribute to the entrainment.
Indian Ocean Subtropical Mode Water: its water characteristics and spatial distribution
Authors: Tsubouchi T. , Suga T. , Hanawa K.
Published: April 2010

Abstract. We have improved a basic description (water characteristics and spatial distribution) of the Indian Ocean Subtropical Mode Water (IOSTMW) using an isopycnally averaged three-dimensional hydrographic dataset. Two mode waters and corresponding wintertime mixed layer depth maxima were observed north of the subtropical front (STF) in the South Indian Ocean: IOSTMW (within 25.8–26.2 σθ) in the region of 28–45° E and another subtropical mode water in the subtropical gyre (within 26.4–26.7 σθ) in the 60–80° E longitudinal band. Through careful examination of the spatial distribution and water characteristics of a core in the layer of minimum vertical temperature gradient (LMVTG), we identified that a mass of LMVTG corresponds to IOSTMW. The average water characteristics of the IOSTMW during approximately 1960–2004 were 16.54 ± 0.49 °C, 35.51 ± 0.04 psu and 26.0 ± 0.1 σθ. The IOSTMW distribution area was estimated to be 25–50° E, 27–38° S. The formation region and approximate water characteristics of the second subtropical mode water were also estimated. Its probable formation region was 37–42° S, 60–80° E and north of the STF, with approximate water characteristics of 12.84 ± 0.57 °C, 35.17 ± 0.11 psu and 26.57 ± 0.04 σθ.
First images and orientation of fine structure from a 3-D seismic oceanography data set
Authors: Blacic T. M. , Holbrook W. S.
Published: April 2010

Abstract. We present 3-D images of ocean fine structure from a unique industry-collected 3-D multichannel seismic dataset from the Gulf of Mexico that includes expendable bathythermograph casts for both swaths. 2-D processing reveals strong laterally continuous reflections throughout the upper ~800 m as well as a few weaker but still distinct reflections as deep as ~1100 m. We interpret the reflections to be caused by reversible fine structure from internal wave strains. Two bright reflections are traced across the 225-m-wide swath to produce reflection surface images that illustrate the 3-D nature of ocean fine structure. We show that the orientation of linear features in a reflection can be obtained by calculating the orientations of contours of reflection relief, or more robustly, by fitting a sinusoidal surface to the reflection. Preliminary 3-D processing further illustrates the potential of 3-D seismic data in interpreting images of oceanic features such as internal wave strains. This work demonstrates the viability of imaging oceanic fine structure in 3-D and shows that, beyond simply providing a way visualize oceanic fine structure, quantitative information such as the spatial orientation of features like fronts and solitons can be obtained from 3-D seismic images. We expect complete, optimized 3-D processing to improve both the signal to noise ratio and spatial resolution of our images resulting in increased options for analysis and interpretation.
The contribution of eastern-boundary density variations to the Atlantic meridional overturning circulation at 26.5° N
Authors: Chidichimo M. P. , Kanzow T. , Cunningham S. A. , Johns W. E. , Marotzke J.
Published: April 2010

Abstract. We study the contribution of eastern-boundary density variations to sub-seasonal and seasonal anomalies of the strength and vertical structure of the Atlantic Meridional Overturning Circulation (AMOC) at 26.5° N, by means of the RAPID/MOCHA mooring array between April 2004 and October 2007. The major density anomalies are found in the upper 500 m, and they are often coherent down to 1400 m. The densities have 13-day fluctuations that are apparent down to 3500 m. The two strategies for measuring eastern-boundary density – a tall offshore mooring (EB1) and an array of moorings on the continental slope (EBH) – show little correspondence in terms of amplitude, vertical structure, and frequency distribution of the resulting basin-wide integrated transport fluctuations, implying that there are significant transport contributions between EB1 and EBH. Contrary to the original planning, measurements from EB1 cannot serve as backup or replacement for EBH: density needs to be measured directly at the continental slope to compute the full-basin density gradient. Fluctuations in density at EBH generate transport variability of 2 Sv rms in the AMOC, while the overall AMOC variability is 4.8 Sv rms. There is a pronounced deep-reaching seasonal cycle in density at the eastern boundary, which is apparent between 100 m and 1400 m, with maximum positive anomalies in spring and maximum negative anomalies in autumn. These changes drive anomalous southward upper mid-ocean flow in spring, implying maximum reduction of the AMOC, and vice-versa in autumn. The amplitude of the seasonal cycle of the AMOC arising from the eastern-boundary densities is 5.2 Sv peak-to-peak, dominating the 6.7 Sv peak-to-peak seasonal cycle of the total AMOC. Our analysis suggests that the seasonal cycle in density may be forced by the strong near-coastal seasonal cycle in wind stress curl.
What are "ecogenomic sensors?" A review and thoughts for the future
Authors: Scholin C. A.
Published: April 2010

Abstract. The OceanSensors08 workshop held 31 March–4 April 2008 in Warnemünde, Germany, brought together an international group of marine scientists, sensor developers and technologists with a common interest in shaping the future of ocean sensing. In preparation for that meeting a series of review papers was commissioned, one of which was meant to cover Sensors for Ocean-omics. The "ocean-omics" topic was cast very broadly. The notion was to review use of genetic techniques for assessing presence and diversity of organisms, their genomic capacity and gene expression, and to provide a prospectus of how such methods could be applied in an autonomous capacity. I chose "ecogenomic sensor" as a descriptor to convey the essence of such a system – a device that integrates genetic level sensing with larger scale environmental characterization. This phrase is derived from workshops refining the US's Ocean Observatories Initiative (OOI) and visions for instrument systems that could be deployed on such a network. But what exactly are ecogenomic sensors? A clear definition is lacking and conceptualizations far outweigh actual hardware that can be deployed in the ocean. This prospectus builds from that point. I advance a definition of "ecogenomic sensor" and outline the opportunities and challenges associated with developing such instruments. Suggestions as to how this technology may be further refined and applied are offered against the backdrop of the Autonomous Microbial Genosensor (AMG) and Environmental Sample Processor (ESP). Applications that center on detection of DNA and RNA are emphasized. The word "review" appears in the title at the request of the editors.
Comparison of global ocean colour data records
Authors: Djavidnia S. , Mélin F. , Hoepffner N.
Published: April 2010

Abstract. The extending record of ocean colour derived information, an important asset for the study of marine ecosystems and biogeochemistry, presently relies on individual satellite missions launched by several space agencies with differences in sensor design, calibration strategies and algorithms. In this study we present an extensive comparative analysis of standard products obtained from operational global ocean colour sensors (SeaWiFS, MERIS, MODIS-Aqua, MODIS-Terra), on both global and regional scales. The analysis is based on monthly mean chlorophyll a (Chl-a) sea surface concentration between 2002 and 2009. Based on global statistics, the Chl-a records appear relatively consistent. The root mean square (RMS) difference Δ between (log-transformed) Chl-a from SeaWiFS and MODIS Aqua amounts to 0.137, with a bias of 0.074 (SeaWiFS Chl-a higher). The difference between these two products and MERIS Chl-a is approximately 0.15. Restricting the analysis to 2007 only, Δ between MODIS Aqua and Terra is 0.142. This global convergence is significantly modulated regionally. Statistics for biogeographic provinces representing a partition of the global ocean, show Δ values varying between 0.08 and 0.3. High latitude regions, as well as coastal and shelf provinces are generally the areas with the largest differences. Moreover, RMS differences and biases are modulated in time, with a coefficient of variation of Δ varying between 10% and 40%, with clear seasonal patterns in some provinces. The comparison of the province-averaged time series obtained from the various satellite products also shows a level of agreement that is geographically variable. Overall, the Chl-a SeaWiFS and MODIS Aqua series appear to have similar levels of variance and display high correlation coefficients, an agreement likely favoured by the common elements shared by the two missions. These results are degraded if the MERIS series is compared to either SeaWiFS or MODIS Aqua. An important outcome of the study is that the results of the inter-comparison analysis are variable with time and location, and therefore globally averaged statistics are not necessarily applicable on a seasonal or regional basis.
Spatiotemporal variations of fCO2 in the North Sea
Authors: Omar A. M. , Olsen A. , Johannessen T. , Hoppema M. , Thomas H. , Borges A. V.
Published: April 2010

Abstract. Data from two Voluntary Observing Ship (VOS) (2005–2007) augmented with data subsets from ten cruises (1987–2005) were used to investigate the spatiotemporal variations of the CO2 fugacity in seawater (fCO2sw) in the North Sea at seasonal and inter-annual time scales. The observed seasonal fCO2sw variations were related to variations in sea surface temperature (SST), biology plus mixing, and air-sea CO2 exchange. Over the study period, the seasonal amplitude in fCO2sw induced by SST changes was 0.4–0.75 times those resulting from variations in biology plus mixing. Along a meridional transect, fCO2sw normally decreased northwards (−12 μatm per degree latitude), but the gradient disappeared/reversed during spring as a consequence of an enhanced seasonal amplitude of fCO2sw in southern parts of the North Sea. Along a zonal transect, a weak gradient (−0.8 μatm per degree longitude) was observed in the annual mean fCO2sw. Annually and averaged over the study area, surface waters of the North Sea were CO2 undersaturated and, thus, a sink of atmospheric CO2. However, during summer, surface waters in the region 55.5–54.5° N were CO2 supersaturated and, hence, a source for atmospheric CO2. Comparison of fCO2sw data acquired within two 1°×1° regions in the northern and southern North Sea during different years (1987, 2001, 2002, and 2005–2007) revealed large interannual variations, especially during spring and summer when year-to-year fCO2sw differences (≈160–200 μatm) approached seasonal changes (≈200–250 μatm). The springtime variations resulted from changes in magnitude and timing of the phytoplankton bloom, whereas changes in SST, wind speed and total alkalinity may have contributed to the summertime interannual fCO2sw differences. The lowest interannual variation (10–50 μatm) was observed during fall and early winter. Comparison with data reported in October 1967 suggests that the fCO2sw growth rate in the central North Sea was similar to that in the atmosphere.
Multi-year satellite observations of instability waves in the Tropical Atlantic Ocean
Authors: Caltabiano A. C. V. , Robinson I. S. , Pezzi L. P.
Published: April 2010

Abstract. Instability waves in the tropical Atlantic Ocean are analysed by microwave satellite-based data spanning from 1998 to 2001. This is the first multi-year observational study of these waves in the region. Sea surface temperature (SST) data were used to show that the waves spectral characteristics vary from year-to-year. They also vary on each latitude north of the equator, with the region of 1° N, 15° W concentrating the largest variability when the time series is averaged along the years. Analyses of wind components show that meridional winds are more affected near the equator and 1° N, while zonal winds are more affected further north at around 3° N and 4° N. Concurrent observations of SST, wind, atmospheric water vapour, liquid cloud water, precipitation rates and wind were used to demonstrate the possible influence of these waves on the Intertropical Convergence Zone (ITCZ). It seems that these instabilities have a large impact on the ITCZ due to its proximity of the equator, compared to its Pacific counterpart, and the geography of the tropical Atlantic basin. These analyses also suggest that the air-sea coupling mechanism suggested by Wallace can also be applied to the tropical Atlantic region.
The circulation of the Persian Gulf: a numerical study
Authors: Kämpf J. , Sadrinasab M.
Published: April 2010

Abstract. We employ a three-dimensional hydrodynamic model (COHERENS) to study the circulation and water mass properties of the Persian Gulf, which is a large inverse estuary. Our findings suggest that the Persian Gulf experiences a distinct seasonal cycle in which a Gulf-wide cyclonic overturning circulation establishes in spring and summer, but this disintegrates into mesoscale eddies in autumn and winter. Establishment of the Gulf-wide circulation coincides with establishment of thermal stratification and strengthening of the baroclinic exchange circulation through the Strait of Hormuz. The latter is associated with winter cooling of extreme saline (>45 psu) water in shallow regions along the coast of United Arab Emirates. To validate the model results, we present a detailed comparison with observational evidence.
Influence of the Southern Annular Mode on the sea ice-ocean system: the role of the thermal and mechanical forcing
Authors: Lefebvre W. , Goosse H.
Published: April 2010

Abstract. The global sea ice-ocean model ORCA2-LIM is used to investigate the impact of the thermal and mechanical forcing associated to the Southern Annular Mode (SAM) on the Antarctic sea ice-ocean system. To do so, the model is driven by idealized forcings based on regressions of the wind stress and the air temperature to SAM. The wind-stress component strongly affects the overall patterns of the ocean circulation with a northward surface drift, a downwelling at about 45° S and an upwelling in the vicinity of the Antarctic continent when SAM is positive. On the other hand, the thermal forcing has a negligible effect on the ocean currents. For sea ice, both the wind-stress (mechanical) and the air temperature (thermal) components have a significant impact. The mechanical part induces a decrease of the sea ice thickness close to the continent and a sharp decrease of the mean sea ice thickness in the Weddell sector. In general, the sea ice area also diminishes, with a maximum decrease in the Weddell Sea. On the contrary, the thermal part tends to increase the ice concentration in all sectors except in the Weddell Sea, where the ice area shrinks. This thermal effect is the strongest in autumn and in winter due to the larger temperature differences associated with SAM during these seasons. The sum of the thermal and mechaninal effects gives a dipole response of sea ice to the SAM, with a decrease of the ice area in the Weddell Sea and around the Antarctic Peninsula and an increase in the Ross and Amundsen Seas during high SAM years. This is in good agreement with the observed response of the ice cover to SAM.
On the representation of regional characteristics by hydrographic measurements at central stations in four deep basins of the Baltic Sea
Authors: Reissmann J. H.
Published: April 2010

Abstract. In this work the eddy resolving data sets of salinity, temperature, and oxygen content aquired in the framework of the German-Russian project MESODYN (MESOscale DYNamics) in the Arkona Basin, the Bornholm Basin, the Stolpe Furrow, and the Eastern Gotland Basin during summer and winter stratification situations are utilized to examine to which extent the observations at the central monitoring stations within these basins are representative for the spatial mean state of the corresponding region. The investiation covers profiles of salinity, potential temperature, oxygen content, potential density, and squared buoyancy or Brunt-Väisälä frequency. Moreover, some parameters of the halocline, namely its depth, thickness, and upper and lower boundaries, and the first baroclinic Rossby radii are subject to the investigation. The profiles match best for the squared buoyancy or Brunt-Väisälä frequency. The profiles of salinity match best in the Eastern Gotland Basin and worst in the Arkona Basin both for summer and winter stratification situations. The overall agreement for the halocline parameters is good. The baroclinic Rossby radii match their spatial mean values well, if the depth range considered for their calculation is restricted to the mean depth in each region at the bottom side. In doing so they also match the spatial mean values of the first baroclinic Rossby radii calculated considering the whole depth range at each station. Overall, the regional characteristics of the investigated quantities and parameters are represented well by the hydrographic measurements at the central stations in the four regions in spite of some significant differences between the spatial mean states and the ovservations at the central stations. In particular, the observations at the central stations seem to be usefull for comparisons between these regions.
High resolution modelling of the North Icelandic Irminger Current (NIIC)
Authors: Logemann K. , Harms I. H.
Published: April 2010

Abstract. The northward inflow of Atlantic Water through Denmark Strait – the North Icelandic Irminger Current (NIIC) – is simulated with a numerical model of the North Atlantic and Arctic Ocean. The model uses the technique of adaptive grid refinement which allows a high spatial resolution (1 km horizontal, 10 m vertical) around Iceland. The model is used to assess time and space variability of volume and heat fluxes for the years 1997–2003. Passive tracers are applied to study origin and composition of NIIC water masses. The NIIC originates from two sources: the Irminger Current, flowing as part of the sub-polar gyre in 100–500 m depth along the Reykjanes Ridge and the shallow Icelandic coastal current, flowing eastward on the south Icelandic shelf. The ratio between the deep and shallow branch is 0.7/0.2 Sv. The NIIC continues as a warm and saline branch northward through Denmark Strait where it entrains large amounts of polar water due to the collision with the southward flowing East Greenland Current. Tracer model results indicate that north of Denmark Strait at Hornbanki section (at 21°30' W from 66°40' N to 67°30' N), the NIIC is composed of 43% water masses of Atlantic origin (AW) originating from the south and 57% entrained polar or Arctic water masses (PW) coming from the north. After passing Denmark Strait, the NIIC follows the coast line north-eastward where it influences the hydrography of north Icelandic waters. Volume and heat transport is highly variable and depends strongly on the wind field north of Denmark Strait. Highest monthly mean transport rates at Hornbanki occur in summer (0.75 Sv) when northerly winds are weak, lowest transport is observed in winter (0.35 Sv). Summer heat flux rates (14 TW) can be even three times higher than in winter (4 TW). Strong variability can also be observed on the interannual scale. In particular the winter 2002/2003 showed anomalous high transport and heat flux rates. During the period 1997 to 2003 decreasing northerly winds caused an increase of the NIIC volume and heat transport by 30%, leading to a warming of North Icelandic shelf by around 0.5K.
Nesting operational forecasting models in the Eastern Mediterranean: active and slave mode
Authors: Sofianos S.S. , Skliris N. , Mantziafou A. , Lascaratos A. , Zodiatis G. , Lardner R. , Hayes D. , Georgiou G.
Published: April 2010

Abstract. Modern ocean operational systems involve different groups and tools, in different regions and scales. Blending all these in a unique system with reliable forecasting capabilities is an important task. The efficiency of nesting procedures between different scale and resolution models are crucial in determining whether the dynamics at the different scales are well represented at each level or the nesting technique suppresses the dynamical features emerging from individual modelling components. In the present work, we investigate the role of the initialization of telescopically nested and with double horizontal resolution forecasting systems in the Eastern Mediterranean, comparing the results between weekly initialized experiments ("slave'' mode) and "free'' runs ("active'' mode) at the regional (Aegean-Levantine area) and shelf (Cyprus) scale. It is found that, although the main circulation pattern remains similar, the differences in the domain mean kinetic energy between the "slave'' and the "active'' experiments in the Aegean-Levantine region are large in both September 2004 and January 2005, with the "active'' being much more energetic, while in the Cyprus area differences are significantly smaller. The most pronounced differences in the circulation and sea surface temperature and salinity fields are observed in the Aegean Sea, during September 2004, related to the inflow and spreading of the Black Sea Water, and the Rhodes Gyre, during January 2005, related to small-scale eddy activity developed and surviving in the "active'' mode experiment that decreases the area of the gyre.
The assessment of temperature and salinity sampling strategies in the Mediterranean Sea: idealized and real cases
Authors: Raicich F.
Published: April 2010

Abstract. Temperature and salinity sampling strategies are studied and compared by means of the Observing System Simulation Experiment technique in order to assess their usefulness for data assimilation in the framework of the Mediterranean Forecasting System (MFS). Their impact in a Mediterranean General Circulation Model is quantified in numerical twin experiments via bivariate data assimilation of temperature and salinity profiles in summer and winter conditions, using the optimal interpolation algorithm implemented in the System for Ocean Forecasting and Analysis. The data impact is quantified by the error reduction in the assimilation run relative to the free run. The sampling strategies studied here include various combinations of temperature and salinity profiles collected along Volunteer Observing Ship (VOS) tracks, by Mediterranean Multi-sensor Moored Arrays (M3A), a Glider and ARGO floating profilers. Idealized sampling strategies involving VOS data allow to recognize the impact of individual tracks. As a result, the most effective tracks are those crossing regions characterized by high mesoscale variability and the presence of frontal structures between water masses. Sampling strategies adopted in summer-autumn 2004 and winter 2005 are studied to assess the impact of VOS and ARGO data in real conditions. The combination of all available data allows to achieve up to 30% error reductions. ARGO data produce a small impact when alone, but represent the only continuous coverage of the basin and are useful as a complement to VOS data sets. Localized data sets, as those obtained by M3As and the Glider seem to have an almost negligible impact in the basin-scale assessment, and are expected to be more effective at regional scale.
Development of a new expendable probe for the study of pelagic ecosystems from Voluntary Observing Ships
Authors: Marcelli M. , Di Maio A. , Donis D. , Mainardi U. , Manzella G. M. R.
Published: April 2010

Abstract. Physical and biological processes of the marine ecosystem have a high spatial and temporal variability, whose study is possible only through high resolution and synoptic observations. The T-FLAP (Temperature and Fluorescence LAunchable Probe) was charted in order to answer to the claim of a cost effective temperature and fluorescence expendable profiler, to be used in ships of opportunity. The development of the expendable fluorimeter has followed similar concepts of the XBT (a wire conducting the signal to a computer card), but differently from that, T-FLAP was developed with an electronic system that can be improved and adapted to several variables measure channels. Commercial components were utilized to reach the aim of a low-cost probe: a glass bulb temperature resistor for the temperature measurement, blue LEDs, a photodiode and available selective glass filters, for fluorescence measurement. The measurement principle employed to detect phytoplankton's biomass is the active fluorescence. This method is an in vivo chlorophyll measure, that can get the immediate biophysical reaction of the cell inside the aquatic ecosystem; it is a non-disruptive method which gives a real time measure and avoids the implicit errors due to the manipulation of samples. The possibility of using continuous profiling probe, with an active fluorescence measurement, is very important in the study of phytoplankton in real time; it is the best way to follow the variability of sea productivity. In fact, because of the high time and space variability of phytoplankton, due to its capability to answer in a relatively short time to ecological variations in its environment and because of its characteristic patchiness, there isn't a precise quantitative estimation of the biomass present in the Mediterranean sea.
Towards measuring the meridional overturning circulation from space
Authors: Cromwell D. , Shaw A. G. P. , Challenor P. , Houseago-Stokes R. , Tokmakian R.
Published: April 2010

Abstract. We present a step towards measuring the meridional overturning circulation (MOC), i.e. the full-depth water mass transport, in the North Atlantic using satellite data. Using the Parallel Ocean Climate Model, we simulate satellite observations of ocean bottom pressure and sea surface height (SSH) over the 20-year period from 1979–1998, and use a linear model to estimate the MOC. As much as 93.5% of the variability in the smoothed transport is thereby explained. This increases to 98% when SSH and bottom pressure are first smoothed. We present initial studies of predicting the time evolution of the MOC, with promising results. It should be stressed that this is an initial step only, and that to produce an actual working system for measuring the MOC from space would require considerable future work.
M3A system (2000–2005) – operation and maintenance
Authors: Petihakis G. , Drakopoulos P. , Nittis C. , Zervakis V. , Christodoulou C. , Tziavos C.
Published: April 2010

Abstract. During the Pilot Phase of the Mediterranean Forecasting System (MFSPP) (1998–2001) a prototype observing system (Mediterranean Moored Multi-sensor Array – M3A) was designed, developed and operated in the Cretan Sea for continuous oceanographic measurements in real time. The main problems encountered were associated with biofouling, underwater and aerial communication and with the design of the surface buoy. In the second phase of the MFS project named Mediterranean Forecasting System Towards Environmental Predictions (MFSTEP) (2001–2005), the aim was to solve those problems and to consolidate the M3A. During the approximately five years of operation there were 13 scheduled and 15 emergency visits with a total duration of 65 days. The acquired experience through the maintenance program proved that the continuous observation of a so important system with a relative low cost is feasible.
Simulations of ARGO profilers and of surface floating objects: applications in MFSTEP
Authors: Pizzigalli C. , Rupolo V.
Published: April 2010

Abstract. In this work we describe part of the activities performed in the MFSTEP project by means of numerical simulations of ARGO profilers and surface floating objects. Simulations of ARGO floats were used to define the optimal time cycling characteristics of the profilers to maximize independent observations of vertical profiles of temperature and salinity and to minimize the error on the estimate of the velocity at the parking depth of the profilers. Instead, the Mediterranean Forecasting System archive of Eulerian velocity field from 2000 to 2004 was used to build a related surface Lagrangian archive, systematically integrating numerical particles released and constrained to drift at surface. Such Lagrangian archive is then used to study the variability of the surface Lagrangian dispersion. Finally, as an example of a possible more realistic application, we estimated the interannual variability of the Lagrangian transport in two key areas of the Western Mediterranean also introducing an exponential decay in the particles concentration.
Variability of Antarctic intermediate water properties in the South Pacific Ocean
Authors: Tomczak M.
Published: April 2010

Abstract. Argo float time series data are used to study the salinity field at the depth of the salinity minimum produced by Antarctic Intermediate Water (AAIW). It is found that far from showing the smooth erosion of the minimum that would result from diffusive flow, the salinity field is characterized by features of geostrophic turbulence such as fronts, eddies and intrusions. Comparison of the Argo float observations with the climatology of the World Ocean Atlas (WOA) reveals significant differences between the two data sets. Some of the differences may have their origin in problems with the WOA data density in remote regions of the South Pacific, but most are more likely produced by interannual variations of the AAIW salinity field.
Distribution of overwintering Calanus in the North Norwegian Sea
Authors: Edvardsen A. , Pedersen J. M. , Slagstad D. , Semenova T. , Timonin A.
Published: April 2010

Abstract. During winter 2003 and 2004, zooplankton and hydrographic data were collected in the northern parts of the Norwegian Sea (68–72° N, 8–17° E) west of the Norwegian shelf break at depths down to 1800 m. The results cover both inter and intra annual changes of hydrography and distribution of Calanus spp. For the whole survey area, average seawater temperature down to 1000 m was higher in 2004 than in the same period in 2003. For the upper 500 m the difference was ca. 1°C. Calanus finmarchicus dominated at ca. 75% of the total copepod abundance. Typical abundance of C. finmarchicus in the survey area was 30 000–40 000 m−2. C. hyperboreus was found deeper than C. finmarchicus while other copepods were found at the depth of C. finmarchicus or shallower. From January to February 2004, the peak of abundance of C. finmarchicus and C. hyperboreus shifted ca. 300 m upwards indicating that ascent from overwintering depth took place at a speed of 10 m d−1 during this period. In general, high abundance of copepods was found adjacent to the shelf slope while oceanic areas had low and intermediate abundance. In the southern part of the survey area, location of high and low copepod abundance shifted both between and within years. In the northern part of the survey area where the shelf slope is less steep, copepods was present at intermediate and high abundance during all surveys.