bluuebunny/crossref_metadata_2025 huggingface dataset:
Spatial Distribution and Source Apportionment of Heavy Metals in the Topsoil of Weifang City, East China
Authors: Li Yan , Xu Zhiqiang , Ren Hanhan , Wang Dong , Wang Jian , Wu Zhen , Cai Pengjie
Published: April 2022

The distribution of heavy metals in topsoil can have a significant impact on human health. A total of 1, 556 samples were collected from the topsoil of Weifang, China. Various indices, including the pollution index (PI), the Nemerow integrated pollution index (PN), and the potential ecological risk index (RI), were used to analyze the heavy metal pollution levels. The sources of heavy metals were analyzed using the positive matrix factorization (PMF) model. The results are as follows: (1) the ecological risk level of Cu, Pb, Zn, Ni, Cr, and As in the study area is relatively safe, but the ecological risk level of Cd and Hg is relatively high, leading to an increase in the ecological risk level of heavy metals in the study area and (2) the PMF results show that there are six main sources of the eight heavy metals. Cr and Ni come from soil parent material and nonferrous metal industrial activities; As is closely related to fossil fuel (coal)-related industrial activities; Cu originated from diesel fuel-related transportation and agricultural machinery activities; Pb is derived from gasoline transportation activities; Hg is closely related to the application of pesticides in agricultural production; Cd and Zn originated from organic fertilizers used in agricultural activities.
Analyzing Cultivated Land Protection Behavior From the Perspective of Land Fragmentation and Farmland Transfer: Evidence From Farmers in Rural China
Authors: Lu Hua , Chen Yijing , Huan Haoting , Duan Na
Published: April 2022

Cultivated land protection is an important way to mitigate land pollution and realize the sustainable development of agriculture. To reveal the key factors influencing farmers’ behavior of adopting cultivated land protection techniques (FBACT) from the perspective of land fragmentation and farmland transfer and to analyze the differences, a multivariate probit model is adopted to quantitatively analyze the impacts on FBACT based on field research and questionnaire surveys conducted in Jiangsu Province, China. The results show that farmland transfer promotes FBACT and that large areas of transfer-in land encourage it. Transfer-in land from outside villages reduces FBACT. The willingness of farmers to adopt protection techniques is affected by their age, their education level, family labor and the agricultural labor price, and it is hindered by land fragmentation. Encouraging farmers to transfer-in land from local villages and increasing their expectations of benefits from cultivated land protection will inspire them to adopt protection techniques. To increase the farmland transfer rate and to alleviate land fragmentation, the government should enhance the management of farmland transfer contracts and strengthen the stability of farmland use rights in farmland transfer. Promoting the transfer and integration of adjacent plots and appropriately expanding plot size will help improve FBACT.
Numerosity Categorization by Parity in an Insect and Simple Neural Network
Authors: Howard Scarlett R. , Greentree Julian , Avarguès-Weber Aurore , Garcia Jair E. , Greentree Andrew D. , Dyer Adrian G.
Published: April 2022

A frequent question as technology improves and becomes increasingly complex, is how we enable technological solutions and models inspired by biological systems. Creating technology based on humans is challenging and costly as human brains and cognition are complex. The honeybee has emerged as a valuable comparative model which exhibits some cognitive-like behaviors. The relative simplicity of the bee brain compared to large mammalian brains enables learning tasks, such as categorization, that can be mimicked by simple neural networks. Categorization of abstract concepts can be essential to how we understand complex information. Odd and even numerical processing is known as a parity task in human mathematical representations, but there appears to be a complete absence of research exploring parity processing in non-human animals. We show that free-flying honeybees can visually acquire the capacity to differentiate between odd and even quantities of 1–10 geometric elements and extrapolate this categorization to the novel numerosities of 11 and 12, revealing that such categorization is accessible to a comparatively simple system. We use this information to construct a neural network consisting of five neurons that can reliably categorize odd and even numerosities up to 40 elements. While the simple neural network is not directly based on the biology of the honeybee brain, it was created to determine if simple systems can replicate the parity categorization results we observed in honeybees. This study thus demonstrates that a task, previously only shown in humans, is accessible to a brain with a comparatively small numbers of neurons. We discuss the possible mechanisms or learning processes allowing bees to perform this categorization task, which range from numeric explanations, such as counting, to pairing elements and memorization of stimuli or patterns. The findings should encourage further testing of parity processing in a wider variety of animals to inform on its potential biological roots, evolutionary drivers, and potential technology innovations for concept processing.
Identification of Enhancer RNA CDK6-AS1 as a Potential Novel Prognostic Biomarker in Gastric Cancer
Authors: Yang Shifeng , Zou Xiaoming , Yang Hao , Li Jiacheng , Zhang Ange , Zhang Lisha , Li Changjian , Zhu Lei , Ma Zhen
Published: April 2022

Background: This study aimed to confirm the role of enhancer RNAs (eRNAs) in gastric cancer and their clinical utility.

Methods: We used Cox survival and relevance analysis to identify the candidate eRNAs in gastric cancer and performed Gene Ontology and Reactome pathway enrichment to determine the potential functions of eRNAs. Correlation between eRNA, tumor-infiltrating immune cells, and drug sensitivity was then analyzed.

Results:CDK6-AS1, a long non-coding RNA cyclin-dependent kinase 6, may serve as a poor potential prognostic biomarker candidate in gastric cancer with a positive correlation with its target gene CDK6. The low CDK6-AS1 expression group showed more frequent mutated driver genes than the high expression group. Moreover, CDK6-AS1 is involved in a key oncogenic pathway of the cell cycle and RNA transcription. CDK6-AS1 also shows dysregulations and associations with prognosis at the pan-cancer level. This eRNA may also be associated with immune cell infiltration and drug sensitivity.

Conclusion:CDK6-AS1 may be a potential prognostic biomarker and chemotherapeutic drug sensitivity predictor in gastric cancer.
Metformin Mitigates Sepsis-Related Neuroinflammation via Modulating Gut Microbiota and Metabolites
Authors: Zhao Huayan , Lyu Yuanjun , Zhai Ruiqing , Sun Guiying , Ding Xianfei
Published: April 2022

Gut microbiota affects the functions of brains. However, its mechanism in sepsis remains unclear. This study evaluated the effect of metformin on ameliorating sepsis-related neurodamage by regulating gut microbiota and metabolites in septic rats. Cecal ligation and puncture (CLP) was used to establish the sepsis-related neurodamage animal models. Metformin therapy by gavage at 1 h after CLP administration was followed by fecal microbiota transplantation (FMT) to ensure the efficacy and safety of metformin on the sepsis-related neurodamage by regulating gut microbiota. The gut microbiota and metabolites were conducted by 16S rRNA sequencing and liquid chromatography-tandem mass spectrometry metabolomic analysis. The brain tissue inflammation response was analyzed by histopathology and reverse transcription-polymerase chain reaction (RT-PCR). This study reported brain inflammatory response, hemorrhage in sepsis-related neurodamage rats compared with the control group (C group). Surprisingly, the abundance of gut microbiota slightly increased in sepsis-related neurodamage rats than C group. The ratio of Firmicutes/Bacteroidetes was significantly increased in the CLP group than the C group. However, no difference was observed between the CLP and the metformin-treated rats (MET group). Interestingly, the abundance of Escherichia_Shigella increased in the MET group than the C and CLP groups, while Lactobacillaceae abundance decreased. Furthermore, Prevotella_9, Muribaculaceae, and Alloprevotella related to short-chain fatty acids production increased in the sepsis-related neurodamage of metformin-treated rats. Additionally, Prevotella_9 and Muribaculaceae correlated positively to 29 metabolites that might affect the inflammatory factors in the brain. The FMT assay showed that metformin improved sepsis-related neurodamage by regulating the gut microbiota and metabolites in septic rats. The findings suggest that metformin improves the sepsis-related neurodamage through modulating the gut microbiota and metabolites in septic rats, which may be an effective therapy for patients with sepsis-related neurodamage.
The Interaction of HLA-C1/KIR2DL2/L3 Promoted KIR2DL2/L3 Single-Positive/NKG2C-Positive Natural Killer Cell Reconstitution, Raising the Incidence of aGVHD after Hematopoietic Stem Cell Transplantation
Authors: Zuo Wei , Yu Xing-Xing , Liu Xue-Fei , Chang Ying-Jun , Wang Yu , Zhang Xiao-Hui , Xu Lan-Ping , Liu Kai-Yan , Zhao Xiao-Su , Huang Xiao-Jun , Zhao Xiang-Yu
Published: April 2022

NKG2C+ natural killer (NK) cell plays a vital role in CMV infection control after hematopoietic stem cell transplantation (HSCT). However, the modulation on NKG2C+ NK cell reconstitution is still unclear. NK cell education is affected by the interactions of HLA-I/killer immunoglobulin receptor (KIR). Our aim is to figure out which HLA-I/KIR interaction plays a dominant role in NKG2C+ NK education. Based on allogeneic haploidentical HSCT, we investigated the expansion and function of single KIR positive NKG2C+ NK cells via the interaction of KIR with both donor HLA and recipient HLA at days 30, 90, and 180 after HSCT. KIR2DL2/L3 single-positive/NKG2C+ cells were significantly expanded compared with KIR2DL1 or KIR3DL1 single-positive/NKG2C+ cells when donors and recipients were both HLA-C1/C1 or HLA-C1C1BW4 (p < 0.05), with higher NKp30 expression (p < 0.05). Moreover, the proportion of single KIR positive NK cells increased in both NKG2C+/NKG2A- NK cells and conventional NKG2C-/NKG2A- NK cells over time. We also observed that increased proportion of KIR2DL2/L3 single-positive/NKG2C+ NK cells correlated with higher incidence of acute graft-versus-host disease (aGVHD). Our study allows a better understanding of HLA-I/KIR interaction in the NKG2C+ NK cell education after HSCT.
Investigations Into the Suitability of Bacterial Suspensions as Biological Indicators for Low-Energy Electron Irradiation
Authors: Schopf Simone , Gotzmann Gaby , Dietze Marleen , Gerschke Stephanie , Kenner Lysann , König Ulla
Published: April 2022

Low-energy electron irradiation is an emerging alternative technology for attenuated or complete pathogen inactivation with respect to medical, biotechnological, and pharmaceutical applications. Pathogen inactivation by ionizing radiation depends mainly on the absorbed electron dose. In low-energy electron irradiation processes, determination of the absorbed electron dose is challenging due to the limited, material-dependent penetration depth of the accelerated electrons into the matter. In general, there are established dosimetry systems to evaluate the absorbed dose under dry irradiation conditions. However, there is no system for precise dose monitoring of low-energy irradiation processes in liquids or suspensions so far. Therefore, in this study three different bacterial species were investigated as biological dose indicators, especially in the range of low doses (< 6.5 kGy) in aqueous solutions or suspensions. Escherichia coli, Bacillus subtilis, and Staphylococcus warneri were comparatively evaluated for their suitability as biological dose indicators. Thin homogeneous films of the respective bacterial suspensions were irradiated with increasing doses of low-energy accelerated electrons. The average absorbed dose was determined using a colorimetric dosimeter based on a tetrazolium salt solution. The maximum and minimum absorbed doses were measured with a referenced film dosimeter. Subsequently, the inactivation kinetics was determined in terms of inactivation curves and D10 values. Thus, the minimum inactivation dose of bacterial growth was assessed for E. coli and S. warneri. The effect of irradiation with low-energy accelerated electrons on the growth behavior and activity of the bacteria was studied in more detail using impedance spectroscopy. With increasing irradiation doses growth was delayed.
The NOD Mouse Beyond Autoimmune Diabetes
Authors: Aubin Anne-Marie , Lombard-Vadnais Félix , Collin Roxanne , Aliesky Holly A. , McLachlan Sandra M. , Lesage Sylvie
Published: April 2022

Autoimmune diabetes arises spontaneously in Non-Obese Diabetic (NOD) mice, and the pathophysiology of this disease shares many similarities with human type 1 diabetes. Since its generation in 1980, the NOD mouse, derived from the Cataract Shinogi strain, has represented the gold standard of spontaneous disease models, allowing to investigate autoimmune diabetes disease progression and susceptibility traits, as well as to test a wide array of potential treatments and therapies. Beyond autoimmune diabetes, NOD mice also exhibit polyautoimmunity, presenting with a low incidence of autoimmune thyroiditis and Sjögren’s syndrome. Genetic manipulation of the NOD strain has led to the generation of new mouse models facilitating the study of these and other autoimmune pathologies. For instance, following deletion of specific genes orviainsertion of resistance alleles at genetic loci, NOD mice can become fully resistant to autoimmune diabetes; yet the newly generated diabetes-resistant NOD strains often show a high incidence of other autoimmune diseases. This suggests that the NOD genetic background is highly autoimmune-prone and that genetic manipulations can shift the autoimmune response from the pancreas to other organs. Overall, multiple NOD variant strains have become invaluable tools for understanding the pathophysiology of and for dissecting the genetic susceptibility of organ-specific autoimmune diseases. An interesting commonality to all autoimmune diseases developing in variant strains of the NOD mice is the presence of autoantibodies. This review will present the NOD mouse as a model for studying autoimmune diseases beyond autoimmune diabetes.
A Third Dose of an Inactivated Vaccine Dramatically Increased the Levels and Decay Times of Anti-SARS-CoV-2 Antibodies, but Disappointingly Declined Again: A Prospective, Longitudinal, Cohort Study at 18 Serial Time Points Over 368 Days
Authors: Liang Xian-Ming , Xu Qiu-Yan , Jia Zhi-Juan , Wu Meng-Juan , Liu Yan-Yun , Lin Li-Rong , Liu Li-Li , Yang Tian-Ci
Published: April 2022

Background

Due to anti-SARS-CoV-2 antibody decay and SARS-CoV-2 variants, vaccine booster doses are a constant concern. It was focused on whether the third dose can quickly evoke and activate immunity and produce a sufficient and durable immune protection.

Objectives

To evaluate the responses and durations of five subsets of anti-SARS-CoV-2 antibodies and their predictive values for protection after the administration of a three-dose inactivated SARS-CoV-2 vaccines regimens.

Methods

A prospective cohort study of five subsets of anti-SARS-CoV-2 antibodies (neutralizing antibody, anti-RBD total antibody, anti-Spike IgG, anti-Spike IgM, and anti-Spike IgA) was carried out to evaluate the efficacies and immune characteristics of a three-dose inactivated SARS-CoV-2 vaccines regimen in 32 volunteers. The dynamic response and immune decay were longitudinally profiled at 18 serial time points over 368 days.

Results

The neutralizing antibody, anti-RBD total antibody, anti-Spike IgG and anti-Spike IgA levels rapidly increased to 773.60 (380.90-1273.00) IU/mL, 639.30 (399.60-878.60) AU/mL, 34.48 (16.83-44.68) S/CO and 0.91 (0.35-1.14) S/CO, respectively, after the administration of the third dose. Compared to the peak value after the second dose, these values were increased by 4.22-fold, 3.71-fold, 1.01-fold and 0.92-fold. On the other hand, the half-lives of the neutralizing antibody, anti-RBD total antibody, and anti-Spike IgG were 56.26 (95% CI, 46.81 to 70.49) days, 66.37 (95% CI, 54.90 to 83.88) days, and 82.91 (95% CI, 63.65 to 118.89) days, respectively. Compared to the half-lives after the second dose, these values were increased by 1.71-fold, 2.00-fold, and 2.93-fold, respectively. Nevertheless, the positive conversion rate of anti-Spike IgM was decreased to 9.38% (3/32), which was much lower than that after the second dose (65.63% (21/32)).

Conclusions

Compared to the second dose, the third dose dramatically increased the antibody levels and decay times. However, the half-life of neutralizing antibody remained unsatisfactory. Due to decay, a fourth dose, and even annual revaccination, might be considered in the SARS-CoV-2 vaccination management strategy.
Rapid Site Selection to Prioritize Coastal Seascapes for Nature-Based Solutions With Multiple Benefits
Authors: Pittman Simon J. , Stamoulis Kostantinos A. , Antonopoulou Marina , Das Himansu S. , Shahid Mohammad , Delevaux Jade M. S. , Wedding Lisa M. , Mateos-Molina Daniel
Published: April 2022

Coastal seascapes are productive and diverse land-sea systems that provide many valuable benefits yet are increasingly threatened by human activity. Scaling up of nature-based solutions (NbS) to effectively protect, sustainably manage, and restore coastal seascapes is urgently required for mitigation of climate change and biodiversity loss while also providing socio-economic benefits. Evidence-based site selection is an important first step to improve the outcomes and avoid negative impacts when prioritizing NbS investments at national level. We developed a spatially explicit, integrative and culturally relevant ecosystem-based site selection process to identify a portfolio of seascapes for NbS consideration in the United Arab Emirates (UAE). The primary goal was to rank planning units based on potential for climate change mitigation action, positive impact to biodiversity and socio-economic benefits to people. The multi-criteria site-selection framework provided a rapid, transparent, repeatable and scalable tool. The highest weightings were assigned to blue carbon storage value, biodiversity conservation features, and local stakeholder preferred areas. Spatial proxies for benefits to people were represented by population density and accessibility to coastal seascapes, relative tourism and recreation potential, and importance of fish habitat and fishing grounds for food security. Participatory mapping of local knowledge and review of existing data ensured that both qualitative and quantitative criteria were reliable, up-to-date and locally relevant. Two distinct clusters of high suitability planning units were identified in the Abu Dhabi region and four along the north-western coast of the UAE. Most high suitability sites were located outside of existing marine protected areas. Alternative spatial scenarios without stakeholder bias underscored the suitability of sites identified through participatory mapping and highlighted additional priority sites for future scaling-up of NbS. A spatial corridor of medium and high suitability planning units across the region offers potential for designing well-connected NbS investments to accelerate and boost synergistic outcomes and increase resilience. The site selection framework provides a rapid tool that integrates local and global open access data at a range of scales with great potential for transferability to other regions worldwide.
Distribution of Different Scrippsiella acuminata (Dinophyta) Cyst Morphotypes in Surface Sediments of the Black Sea: A Basin Scale Approach
Authors: Dzhembekova Nina , Rubino Fernando , Belmonte Manuela , Zlateva Ivelina , Slabakova Nataliya , Ivanova Petya , Slabakova Violeta , Nagai Satoshi , Moncheva Snejana
Published: April 2022

Plankton cyst abundance and distribution is controlled by multiple factors. The stress linked to the fluctuations and variations of the environmental conditions in the water column is a major vector of encystment and intraspecific variability is an important adaptive strategy. The present study aims to disclose a link between the spatial distribution and abundance of different cyst morphotypes ofScrippsiella acuminatacomplex in surface sediments collected in the Black Sea at 34 sites and selected environmental variables. With this purpose, a basin scale data set was analyzed for patterns of intraspecific spatial heterogeneity. Redundancy analysis (RDA) was implemented to identify explanatory environmental variables associated with the cyst morphotypes abundance. Environmental multiyear data were used to ensure better approximation of a model that links environmental gradients with cyst abundance. Our results show that allS. acuminatacysts morphotypes are significantly correlated to one or a combination of the environmental variables, i.e., salinity, temperature and nutrients (nitrates and phosphates). The geographical distribution ofScrippsiellablooms in the Black Sea indicates that the interplay between the planktonic and benthic habitat of the dinoflagellate gives toS. acuminatathe advantage to dominate in the plankton communities.
Functionalized Silicone Elastomer via Alkaline Solution to Coat Phosphorylcholine-Based Copolymer Containing Organosilane to Improve Hemocompatibility for Medical Devices
Authors: Chou Fang-Yu , Hara Shintaro , Uchida Kazuto , Matsuo Youichi , Masuda Tsukuru , Yokoi Ryo , Ono Toshiya , Anraku Masaki , Isoyama Takashi , Takai Madoka
Published: April 2022

Surface modification of hemocompatible copolymers on silicone elastomers (SEs) is crucial for the long-term use of medical devices. Both physical adsorption and chemical conjugation are important for modification of SE. Oxygen plasma treatment is widely used to produce silanol groups on SE for silane coupling. However, the plasma reaction is difficult to apply to the surface modification of three-dimensional complex devices. This study demonstrated an appropriate and efficient method with alkaline solution for producing silanol groups on SE for modifying phosphorylcholine-based copolymer with organosilane (cross-MPC copolymer). A 2.5 wt% aqueous solution of potassium hydroxide (KOH) was effective in producing silanol groups and for coating the cross-MPC copolymer. Additionally, we successfully modified the cross-MPC copolymer on the inner surface of SE tubes after pretreatment with the 2.5 wt% KOH aqueous solution, and the copolymer film was coated homogeneously. The cross-MPC copolymer film on SE was stable for one month under fluidic condition with a shear stress of 3.2 Pa. The hollow fiber membrane with the polymer coating inhibited blood coagulation after one week implantation with extracorporeal circulation device using a goat. Therefore, pretreatment of SE using an alkaline solution is an appropriate method for producing silanol groups for coating the cross-MPC copolymer by silane-coupling reaction.
A Two-Relaxation-Time Lattice Boltzmann Model for Electron Beam Selective Melting Additive Manufacturing
Authors: Chen Daoliang , Chen Wei , Liu Yanfei , Sun Dongke
Published: April 2022

Electron beam selective melting is a rapidly developing additive manufacturing technology for industry and engineering. A two-relaxation-time lattice Boltzmann model is proposed to simulate melt flows and free surface dynamics in an EBSM additive manufacturing process. The model also describes the dynamics of solid-liquid phase change and heat transfer, and it is validated by several simulations of classical benchmarks. The model was applied to further simulate single and multiple tracks of electron beam selective melting on a single layer of powder bed and to analyze the influence of process parameters. The results demonstrate significant potentials of the present model for the study of additive manufacturing processes.
Assessment of Knowledge Regarding Safety Profile, Use, and Boxed Warnings of Fluoroquinolones Among Healthcare Professionals in Saudi Arabia: A Potential Implication for Drug Regulatory Authorities
Authors: Mallhi Tauqeer Hussain , Alanazi Abdullah Salah , Khan Yusra Habib , Alotaibi Nasser Hadal , Salman Muhammad , Alzarea Abdulaziz Ibrahim , Khan Salah-Ud-Din , Alruwaili Nabil K. , Alenazi Alaa Salah , Alatawi Ahmed D. , Iqbal Zafar , Butt Muhammad Hammad , Iqbal Muhammad Shahid
Published: April 2022

Background

Despite a series of “boxed warnings” (BWs) issued by the US Food and Drug Administration (FDA), fluoroquinolones (FQs) are among the most prescribed antibiotics across the world. Moreover, few studies demonstrated that BW of FQs had less or no impact on prescribing patterns among healthcare professionals (HCPs), which might be attributed to the lack of knowledge toward such warnings. Since FQs contribute to a major proportion of antimicrobial prescriptions in the Kingdom of Saudi Arabia (KSA), this study aimed to ascertain the extent of knowledge toward safety profile, use, and BW of FQs among HCPs working in the KSA.

Methods

This cross-sectional study (May–August 2021) was conducted among HCPs working in KSA through a validated questionnaire. The HCPs were requested to identify the indications, adverse effects (AEs), and BW of FQs. The knowledge score (out of 40) was estimated among participants, and its association with demographics was ascertained through the chi-square test, Student's t-test, or Mann-Whitney U-test and one-way ANOVA, or Kruskal-Wallis test, where appropriate.

Results

Of the 573 participants (age: 36.1 ± 10.6 years, men: 59.7%), 262 (45.8%) were prescribers reporting frequent use of ciprofloxacin, levofloxacin, and ofloxacin. One-fourth (25.6%) of the prescribers did not recognize nalidixic acid as an agent from FQs class. About 60% of participants correctly identified the mechanism of action of FQs. The average knowledge score was 14.8 ± 6.4, where only 21.5% of respondents scored ≥50%. The average knowledge score for indications, AEs, and BW domains was 5.29 ± 3.05, 6.17 ± 4.05, and 2.3 ± 1.5, respectively. Only 75 (13.1%) participants recognized half of the BW, and 38.6% of participants identified at least one warning. The HCPs aged >40 years (p = 0.043), having non-Saudi's nationality (p < 0.001), working in Riyadh and Eastern regions (p < 0.001), having pharmacy and medicine disciplines (p < 0.001), practicing in public sectors (p = 0.004), and having more than 10 years of experience (p < 0.001) were significantly associated with high knowledge score.

Conclusion

This study demonstrates the unsatisfactory knowledge toward safety profile, use, and BW of FQs among HCPs which may put patients at increased risks of AEs. The knowledge score differed among various socio-demographic groups. There is a dire need to initiate the antimicrobial-focused educational campaigns among HCPs regardless of their specialties and methods to improve education and disseminate FDA warnings in practice.
A Qualitative Study Exploring Perceptions to the Human T Cell Leukaemia Virus Type 1 in Central Australia: Barriers to Preventing Transmission in a Remote Aboriginal Population
Authors: Fowler Fiona , Einsiedel Lloyd
Published: April 2022

Background

Central Australia has the highest recorded prevalence of infection with the human T cell leukaemia virus type 1 (HTLV-1) worldwide. Each of the clinical diseases associated with HTLV-1 have been reported in this region, including deaths due to adult T cell leukaemia, which is causally linked to HTLV-1. Nevertheless, no public health response has been implemented to reduce HTLV-1 transmission among the affected Aboriginal population. In the first study to explore the perceptions of healthcare professionals along with those of Aboriginal people whose communities are actually impacted by HTLV-1, we sought to understand the barriers to preventing HTLV-1 transmission in this remote area.

Methodology/Principal Findings

Semi and un-structured interviews were conducted with 30 Australian Aboriginal people, 26 non-Aboriginal healthcare professionals and 3 non-Aboriginal community workers. The purpose of the interviews was to explore perceptions towards HTLV-1 in a health context with a focus on sexual and reproductive rights. Deductive and inductive analyses were applied to the data and a decolonizing lens brought peripheral stories to the fore. A major finding was the contrast between views expressed by Aboriginal participants and healthcare professionals regarding the provision of knowledge to those affected. Aboriginal participants consistently articulated that they and their communities should be informed of, and can hold, knowledges pertaining to HTLV-1. This finding controverted the perceptions of healthcare professionals that the complexities of the virus would not be well-understood by their Aboriginal patients and that sharing HTLV-1 knowledges might overwhelm Aboriginal people. Further analyses revealed a spectrum of understanding and clinical practice, while also delineating signs of an imagined public health response.

Conclusions/Significance

HTLV-1 remains a neglected infection in Australia. Knowledge of HTLV-1 is held by a privileged medical elite and does not flow to marginalised Aboriginal people living in affected communities. We demonstrate that differences in the perspectives of stakeholders presents a significant barrier to the development of cohesive, culturally safe prevention programs that foster a shared knowledge of HTLV-1. The interview data suggests that a successful public health program is likely to require a dual approach that includes clinical care and community-driven health promotion. Aspects of this approach, which would raise awareness and potentially reduce transmission and lower HTLV-1 prevalence in Central Australia, may be applicable to other endemic settings with similar conditions of social disadvantage, geographic remoteness, resource limitations and cross-cultural challenges.
Dry-Lensectomy Assisted Lensectomy in the Management for End-Stage Familial Exudative Vitreoretinopathy Complicated With Anterior Segment Abnormalities
Authors: Peng Jie , Zhao Ziwei , Zou Yihua , Zhang Xuerui , Yang Yuan , Huang Qiujing , Xu Mingpeng , Xu Yu , Zhao Peiquan
Published: April 2022

Purpose

To report a modified technique of dry-lensectomy assisted lensectomy in the management of end-stage familial exudative vitreoretinopathy (FEVR) complicated with capsule-endothelial, iris-endothelial adhesion and secondary glaucoma.

Methods

24 eyes of 16 patients with severe complications of advanced pediatric total retinal detachment caused by FEVR who received limbus-based dry-lensectomy were studied retrospectively. Preoperative and postoperative clinical information was collected and reviewed.

Results

Among the 24 eyes, three eyes (12.50%) underwent lensectomy combined with vitrectomy and membrane peeling simultaneously. 21 (87.50%) eyes underwent lensectomy without membrane peeling due to severe corneal opacity or retinal vascular activity, of which eight underwent another vitrectomy combined with membrane peeling. At the last visit (mean:13.86 ± 5.24 months of follow-up), all eyes had a reconstructed anterior chamber with normal depth. Among 21 eyes having preoperative corneal opacity, 15 (71.43%) had a clearer cornea with reduced opacity, 5 (23.81%) showed similar corneal opacification without deterioration. Among 11 eyes undergone retrolental fibroplasia peeling, seven (63.64%) eyes showed partial retinal reattachment in open-funnel type.

Conclusion

Dry-lensectomy offered a simple way to lower the intraocular pressure and simplified the surgery, which helped to solve the severe anterior segment complications and offer a chance for following retrolental fibroplasia peeling and potential visual gain for selected end-stage FEVR patients.
Predictors of Maternal Near Miss in Public Hospitals of West Shoa Zone, Central Ethiopia: A Case-Control Study
Authors: Danusa Kababa Temesgen , Debelo Bikila Tefera , Wakgari Negash , Seifu Benyam , Kenasa Ketema , Daba Gurmesa , Wondimu Fikadu , Berhanu Keneni
Published: April 2022

Background

Maternal mortality reduction remains a priority to ensure healthy lives and promote wellbeing for mothers and newborns in the new sustainable development goals agenda. There is no evidence-based study done regarding maternal complications and near-miss in the study area.

Objectives

This study assessed the predictors of maternal near-miss in public hospitals of West Shoa Zone, Central Ethiopia, 2020.

Methods

An unmatched case-control study was conducted among 664 (166 cases and 498 controls) women who gave birth in public institutions in the West Shewa zone. Structured questionnaires and checklists were used to collect the data. Bivariate, multivariable logistic regression, and adjusted odds ratios were used to describe the strength and directions of association.

Results

The odds of maternal near-miss were higher among mothers with increased maternal age [Adjusted odds ratio (AOR) = 1.065, 95%CI: (1.015–1.117)], who could not read and write (AOR = 3.06, 95%CI: 1.314–7.135), had primary (AOR = 3.49, 95%CI: 1.518–8.044), and secondary (AOR = 3.213, 95%CI: 1.418–7.282), had no antenatal care (ANC) follow-up (AOR = 2.25, 95%CI: 1.100–4.607), mothers who had a first delay of more than 6 h [AOR = 2.38, 95%CI: (1.517–3.735)] and the distance from health facility of > 60 min [AOR = 4.021, 95%CI: (1.817–8.896)].

Conclusion

In this study, delay in decision making and reaching the health facility, lower educational status, not having ANC follow-up, and increased maternal age were significantly associated with maternal near misses. Therefore, the Ethiopian federal ministry of health and other stakeholders should work on increasing ANC coverage, awareness creation, and strong means of transportation to tackle the complications of a maternal near miss.
The Prognostic Significance of C-Reactive Protein to Albumin Ratio in Patients With Severe Fever With Thrombocytopenia Syndrome
Authors: Yang Xiaozhou , Yin Huimin , Xiao Congshu , Li Rongkuan , Liu Yu
Published: April 2022

Background

Severe fever with thrombocytopenia syndrome (SFTS) is an emerging infectious disease with the high case-fatality rate, lacking effective therapies and vaccines. Inflammation-based indexes have been widely used to predict the prognosis of patients with cancers and some inflammatory diseases. In our study, we aim to explore the predictive value of the inflammation-based indexes in SFTS patients.

Methods

We retrospectively analyzed 82 patients diagnosed with SFTS. The inflammation-based indexes, including neutrophil-to-lymphocyte ratio (NLR), monocyte-to-lymphocyte ratio (MLR), platelet-to-lymphocyte ratio (PLR), systemic immune-inflammation index (SII), systemic inflammation response index (SIRI), aggregate index of systemic inflammation (AISI) and C-reactive protein to albumin ratio (CAR), were compared between the survival and death patients. Receiver operating characteristic (ROC) curves were used to compare the predictive ability of MLR, AISI, and CAR. The survival analysis was based on the Kaplan–Meier (KM) method. Multivariate logistic regression analysis was used to analyze the independent risk factors of poor prognosis in patients with SFTS.

Results

The CAR is higher in the death group while MLR and AISI were higher in the survival group. The ROC curve analysis indicated CAR exhibited more predictive value than the other indexes and the optimal cut-off value of CAR was equal to or greater than 0.14. KM survival curve showed that higher CAR was significantly correlated to the lower overall survival in SFTS patients. Multivariate logistic regression analysis indicated that CAR was an independent risk factor for poor prognosis in patients with SFTS.

Conclusion

The CAR is an independent risk factor for death in patients with SFTS and could predict the poor prognosis of SFTS patients. It could be used as a biomarker to help physicians to monitor and treat patients more aggressively to improve clinical prognosis.
Effects of Site-Directed Mutagenesis of Cysteine on the Structure of Sip Proteins
Authors: Wang Lin , Ding Ming-Yue , Wang Jing , Gao Ji-Guo , Liu Rong-Mei , Li Hai-Tao
Published: April 2022

Bacillus thuringiensis, a gram-positive bacteria, has three insecticidal proteins: Vip (vegetative insecticidal protein), Cry (crystal), and Sip (secreted insecticidal protein). Of the three, Sip proteins have insecticidal activity against larvae of Coleoptera. However, the Sip1Aa protein has little solubility in the supernatant because of inclusion bodies. This makes it more difficult to study, and thus research on Sip proteins is limited, which hinders the study of their mechanistic functions and insecticidal mechanisms. This highlights the importance of further investigation of the Sip1Aa protein. Disulfide bonds play an important role in the stability and function of proteins. Here, we successfully constructed mutant proteins with high insecticidal activity. The tertiary structure of the Sip1Aa protein was analyzed with homologous modeling and bioinformatics to predict the conserved domain of the protein. Cysteine was used to replace amino acids via site-directed mutagenesis. We successfully constructed Sip149-251, Sip153-248, Sip158-243, and Sip178-314 mutant proteins with higher solubility than Sip1Aa. Sip153-248 and Sip158-243 were the most stable compared to Sip1Aa, followed by Sip149-251 and Sip178-314. The insecticidal activity of Sip153-248 (Sip158-243) was 2.76 (2.26) times higher than that of Sip1Aa. The insecticidal activity of Sip149-251 and Sip178-314 did not differ significantly from that of Sip1Aa. Basic structural properties, physicochemical properties, and the spatial structure of the mutation site of Sip1Aa and the mutant proteins were analyzed. These results provide a molecular basis for using Sip1Aa to control Coleopteran insects and contribute to the study of the Sip1Aa insecticidal mechanism.
Association Between Human Gut Microbiome and N-Glycan Composition of Total Plasma Proteome
Authors: Petrov Vyacheslav A. , Sharapov Sodbo Zh. , Shagam Lev , Nostaeva Arina V. , Pezer Marija , Li Dalin , Hanić Maja , McGovern Dermot , Louis Edouard , Rahmouni Souad , Lauc Gordan , Georges Michel , Aulchenko Yurii S.
Published: April 2022

Being one of the most dynamic entities in the human body, glycosylation of proteins fine-tunes the activity of the organismal machinery, including the immune system, and mediates the interaction with the human microbial consortium, typically represented by the gut microbiome. Using data from 194 healthy individuals, we conducted an associational study to uncover potential relations between the gut microbiome and the blood plasma N-glycome, including N-glycome of immunoglobulin G. While lacking strong linkages on the multivariate level, we were able to identify associations between alpha and beta microbiome diversity and the blood plasma N-glycome profile. Moreover, for two bacterial genera, namely, Bilophila and Clostridium innocuum, significant associations with specific glycans were also shown. The study’s results suggest a non-trivial, possibly weak link between the total plasma N-glycome and the gut microbiome, predominantly involving glycans related to the immune system proteins, including immunoglobulin G. Further studies of glycans linked to microbiome-related proteins in well-selected patient groups are required to conclusively establish specific associations.
Structure Prediction and Potential Inhibitors Docking of Enterovirus 2C Proteins
Authors: Li Daoqun , Zhang Leiliang
Published: April 2022

Human enterovirus infections are mostly asymptomatic and occasionally could be severe and life-threatening. The conserved non-structural 2C from enteroviruses protein is a promising target in antiviral therapies against human enteroviruses. Understanding of 2C-drug interactions is crucial for developing the potential antiviral agents. While functions of enterovirus 2C proteins have been widely studied, three-dimensional structure information of 2C is limited. In this study, the structures of 2C proteins from 20 enteroviruses were simulated and reconstructed using I-TASSER programs. Subsequent docking studies of the known 22 antiviral inhibitors for 2C proteins were performed to uncover the inhibitor-binding characteristics of 2C. Among the potential inhibitors, the compound hydantoin exhibited the highest broad-spectrum antiviral activities with binding to 2C protein. The anti-enteroviral activity of GuaHCL, compound 19b, R523062, compound 12a, compound 12b, quinoline analogs 12a, compound 19d, N6-benzyladenosine, dibucaine derivatives 6i, TBZE-029, fluoxetine analogs 2b, dibucaine, 2-(α-hydroxybenzyl)-benzimidazole (HBB), metrifudil, pirlindole, MRL-1237, quinoline analogs 10a, zuclopenthixol, fluoxetine, fluoxetine HCl, and quinoline analogs 12c showed a trend of gradual decrease. In addition, the free energy with 22 compounds binding to EV 2C ranged from −0.35 to −88.18 kcal/mol. Our in silico studies will provide important information for the development of pan-enterovirus antiviral agents based on 2C.
Comparative Analysis of L-Fucose Utilization and Its Impact on Growth and Survival of Campylobacter Isolates
Authors: Middendorf Pjotr S. , Jacobs-Reitsma Wilma F. , Zomer Aldert L. , den Besten Heidy M. W. , Abee Tjakko
Published: April 2022

Campylobacter jejuni and Campylobacter coli were previously considered asaccharolytic, but are now known to possess specific saccharide metabolization pathways, including L-fucose. To investigate the influence of the L-fucose utilization cluster on Campylobacter growth, survival and metabolism, we performed comparative genotyping and phenotyping of the C. jejuni reference isolate NCTC11168 (human isolate), C. jejuni Ca1352 (chicken meat isolate), C. jejuni Ca2426 (sheep manure isolate), and C. coli Ca0121 (pig manure isolate), that all possess the L-fucose utilization cluster. All isolates showed enhanced survival and prolonged spiral cell morphology in aging cultures up to day seven in L-fucose-enriched MEMα medium (MEMαF) compared to MEMα. HPLC analysis indicated L-fucose utilization linked to acetate, lactate, pyruvate and succinate production, confirming the activation of the L-fucose pathway in these isolates and its impact on general metabolism. Highest consumption of L-fucose by C. coli Ca0121 is conceivably linked to its enhanced growth performance up to day 7, reaching 9.3 log CFU/ml compared to approximately 8.3 log CFU/ml for the C. jejuni isolates. Genetic analysis of the respective L-fucose clusters revealed several differences, including a 1 bp deletion in the Cj0489 gene of C. jejuni NCTC11168, causing a frameshift in this isolate resulting in two separate genes, Cj0489 and Cj0490, while no apparent phenotype could be linked to the presumed frameshift in this isolate. Additionally, we found that the L-fucose cluster of C. coli Ca0121 was most distant from C. jejuni NCTC11168, but confirmation of links to L-fucose metabolism associated phenotypic traits in C. coli versus C. jejuni isolates requires further studies.
High-Yield Production of Catalytically Active Regulatory [NiFe]-Hydrogenase From Cupriavidus necator in Escherichia coli
Authors: Fan Qin , Caserta Giorgio , Lorent Christian , Zebger Ingo , Neubauer Peter , Lenz Oliver , Gimpel Matthias
Published: April 2022

Hydrogenases are biotechnologically relevant metalloenzymes that catalyze the reversible conversion of molecular hydrogen into protons and electrons. The O2-tolerant [NiFe]-hydrogenases from Cupriavidus necator (formerly Ralstonia eutropha) are of particular interest as they maintain catalysis even in the presence of molecular oxygen. However, to meet the demands of biotechnological applications and scientific research, a heterologous production strategy is required to overcome the low production yields in their native host. We have previously used the regulatory hydrogenase (RH) from C. necator as a model for the development of such a heterologous hydrogenase production process in E. coli. Although high protein yields were obtained, the purified enzyme was inactive due to the lack of the catalytic center, which contains an inorganic nickel-iron cofactor. In the present study, we significantly improved the production process to obtain catalytically active RH. We optimized important factors such as O2 content, metal availability, production temperature and time as well as the co-expression of RH-specific maturase genes. The RH was successfully matured during aerobic cultivation of E. coli by co-production of seven hydrogenase-specific maturases and a nickel permease, which was confirmed by activity measurements and spectroscopic investigations of the purified enzyme. The improved production conditions resulted in a high yield of about 80 mg L–1 of catalytically active RH and an up to 160-fold space-time yield in E. coli compared to that in the native host C. necator [<0.1 U (L d) –1]. Our strategy has important implications for the use of E. coli K-12 and B strains in the recombinant production of complex metalloenzymes, and provides a blueprint for the production of catalytically active [NiFe]-hydrogenases in biotechnologically relevant quantities.
Analysis of Myxococcus xanthus Vegetative Biofilms With Microtiter Plates
Authors: Dye Keane J. , Yang Zhaomin
Published: April 2022

The bacterium Myxococcus xanthus forms both developmental and vegetative types of biofilms. While the former has been studied on both agar plates and submerged surfaces, the latter has been investigated predominantly on agar surfaces as swarming colonies. Here we describe the development of a microplate-based assay for the submerged biofilms of M. xanthus under vegetative conditions. We examined the impacts of inoculation, aeration, and temperature to optimize the conditions for the assay. Aeration was observed to be critical for the effective development of submerged biofilms by M. xanthus, an obligate aerobic bacterium. In addition, temperature plays an important role in the development of M. xanthus submerged biofilms. It is well established that the formation of submerged biofilms by many bacteria requires both exopolysaccharide (EPS) and the type IV pilus (T4P). EPS constitutes part of the biofilm matrix that maintains and organizes bacterial biofilms while the T4P facilitates surface attachment as adhesins. For validation, we used our biofilm assay to examine a multitude of M. xanthus strains with various EPS and T4P phenotypes. The results indicate that the levels of EPS, but not of piliation, positively correlate with submerged biofilm formation in M. xanthus.
The Oral Microbiota: Community Composition, Influencing Factors, Pathogenesis, and Interventions
Authors: Li Xinyi , Liu Yanmei , Yang Xingyou , Li Chengwen , Song Zhangyong
Published: April 2022

The human oral cavity provides a habitat for oral microbial communities. The complexity of its anatomical structure, its connectivity to the outside, and its moist environment contribute to the complexity and ecological site specificity of the microbiome colonized therein. Complex endogenous and exogenous factors affect the occurrence and development of the oral microbiota, and maintain it in a dynamic balance. The dysbiotic state, in which the microbial composition is altered and the microecological balance between host and microorganisms is disturbed, can lead to oral and even systemic diseases. In this review, we discuss the current research on the composition of the oral microbiota, the factors influencing it, and its relationships with common oral diseases. We focus on the specificity of the microbiota at different niches in the oral cavity, the communities of the oral microbiome, the mycobiome, and the virome within oral biofilms, and interventions targeting oral pathogens associated with disease. With these data, we aim to extend our understanding of oral microorganisms and provide new ideas for the clinical management of infectious oral diseases.