bluuebunny/crossref_metadata_2025 huggingface dataset:
Investigating (Pseudo)-Heterogeneous Pd-Catalysts for Kraft Lignin Depolymerization under Mild Aqueous Basic Conditions
Authors: Bourbiaux Dolorès , Xu Yu , Burel Laurence , Goc Firat , Fongarland Pascal , Philippe Régis , Aubert Guillaume , Aymonier Cyril , Rataboul Franck , Djakovitch Laurent
Published: November 2021

Lignin is one of the main components of lignocellulosic biomass and corresponds to the first renewable source of aromatic compounds. It is obtained as a by-product in 100 million tons per year, mainly from the paper industry, from which only 2–3% is upgraded for chemistry purposes, with the rest being used as an energy source. The richness of the functional groups in lignin makes it an attractive precursor for a wide variety of aromatic compounds. With this aim, we investigated the Pd-catalyzed depolymerization of lignin under mild oxidizing conditions (air, 150 °C, and aqueous NaOH) producing oxygenated aromatic compounds, such as vanillin, vanillic acid, and acetovanillone. Palladium catalysts were implemented following different strategies, involving nanoparticles stabilized in water, and nanoparticles were supported on TiO2. Significant conversion of lignin was observed in all cases; however, depending on the catalyst nature and the synthetic methods, differences were observed in terms of selectivity in aromatic monomers, mainly vanillin. All these aspects are discussed in detail in this report, which also provides new insights into the role that Pd-catalysts can play for the lignin depolymerization mechanism.
Pd–Au Bimetallic Catalysts for the Hydrogenation of Muconic Acid to Bio-Adipic Acid
Authors: Capelli Sofia , Barlocco Ilaria , Scesa Federico Maria , Huang Xiaohui , Wang Di , Tessore Francesca , Villa Alberto , Di Michele Alessandro , Pirola Carlo
Published: November 2021

The hydrogenation reaction of muconic acid, produced from biomass using fermentative processes, to bio-adipic acid is one of the most appealing green emerging chemical process. This reaction can be promoted by catalysts based on a metal belonging to the platinum group, and the use of a second metal can preserve and increase their activity. Pd–Au bimetallic nanoparticle samples supported on high-temperature, heat-treated carbon nanofibers were prepared using the sol immobilization method, changing the Pd–Au molar ratio. These catalysts were characterized by TEM, STEM, and XPS analysis and tested in a batch reactor pressurized with hydrogen, where muconic acid dissolved in water was converted to adipic acid. The synthesized Pd–Au bimetallic catalysts showed higher activity than monometallic Au and Pd material and better stability during the recycling tests. Moreover, the selectivity toward the mono-unsaturated changed by decreasing the Pd/Au molar ratio: the higher the amount of gold, the higher the selectivity toward the intermediates.
Atmospheric Pressure Catalytic Vapor Deposition of Graphene on Liquid In and Cu-In Alloy Substrates
Authors: Saeed Maryam A. , Kinloch Ian A. , Derby Brian
Published: November 2021

Liquid substrates are great candidates for the growth of high-quality graphene using chemical vapour deposition (CVD) due to their atomically flat and defect free surfaces. A detailed study of graphene growth using atmospheric pressure CVD (APCVD) on liquid indium (In) was conducted. It was found that the effect of the growth parameters on the quality of the graphene produced is highly dependent on the properties of the substrate used. A short residence time of 6.8 sec for the reactive gases led to a high graphene quality, indicating the good catalytic behaviour of In. The role of hydrogen partial pressure was found to be crucial, with monolayer and bilayer graphene films with a low defect density obtained at low PH2 (38.6 mbar), whilst more defective, thicker graphene films with a partial coverage being obtained at high PH2 (74.3 mbar). The graphene deposition was insensitive to growth time as the graphene growth on liquid In was found to self-limit to bilayer. For further investigation, five compositions of Cu-In alloys were made by arc-melting. Graphene was then grown using the optimum conditions for In and the quality of the graphene was found to degrade with increasing Cu wt.%. This work will aid the future optimisation of the growth conditions based upon the substrate’s properties.
Computational Assessment of Botrytis cinerea Lipase for Biofuel Production
Authors: Fatma Tehsin , Zafar Zeeshan , Fatima Sidra , Paracha Rehan Zafar , Adnan Fazal , Zeshan  , Virk Nasar , Bhatti Muhammad Faraz
Published: November 2021

The demand for ecofriendly green catalysts for biofuel synthesis is greatly increasing with the effects of fossil fuel depletion. Fungal lipases are abundantly used as biocatalysts for the synthesis of biofuel. The use of Botrytis cinerea lipase is an excellent approach for the conversion of agroindustrial residues into biofuel. In this study, phylogenetic analyses were carried out and the physicochemical properties of B. cinerea lipase were assessed. Furthermore, the protein structure of B. cinerea lipase was predicted and refined. Putative energy-rich phytolipid compounds were explored as a substrate for the synthesis of biofuel, owing to B. cinerea lipase catalysis. Approximately 161 plant-based fatty acids were docked with B. cinerea lipase in order to evaluate their binding affinities and interactions. Among the docked fatty acids, the top ten triglycerides having the lowest number of binding affinities with B. cinerea lipase were selected, and their interactions were assessed. The top three triglycerides having the greatest number of hydrogen bonds and hydrophobic interactions were selected for simulations of 20 ns. The docking and simulations revealed that docosahexaenoic acid, dicranin, and hexadeca-7,10,13-trienoic acid had stable bonding with the B. cinerea lipase. Therefore, B. cinerea lipase has the potential to be used for the transesterification of fatty acids into biofuels, whereas docosahexaenoic acid, dicranin, and hexadeca-7,10,13-trienoic acid can be used as substrates of B. cinerea lipase for biofuel synthesis.
Carbon-Supported KCoMoS2 for Alcohol Synthesis from Synthesis Gas
Authors: Osman Mohamed E. , Maximov Vladimir V. , Dorokhov Viktor S. , Mukhin Viktor M. , Sheshko Tatiana F. , Kooyman Patricia J. , Kogan Viktor M.
Published: November 2021

KCoMoS2 was supported on various carbon support materials to study the support effect on synthesis gas conversion. Next to two activated carbons with high micropore volume, a traditional alumina (γ-Al2O3) support and its carbon coated form (CCA) were studied for comparison. Coating alumina with carbon increases the selectivity to alcohols, but the AC-supported catalysts show even higher alcohol selectivities and yields, especially at higher temperatures where the conversions over the AC-supported catalysts increase more than those over the γ-Al2O3-based catalysts. Increasing acidity leads to decreased CO conversion yield of alcohols. The two activated-carbon-supported catalysts give the highest yield of ethanol at the highest conversion studied, which seems to be due to increased KCoMoS2 stacking and possibly to the presence of micropores and low amount of mesopores.
Direct Etherification Reaction of Glycerol Using Alkali Metal Cation (Li+, Na+ and K+) Containing X-Type Zeolites as Heterogeneous Catalysts: Optimization of the Reaction Conditions
Authors: Park Seo Kyung , Kim Dae Won , Lee Su Yeon , Lee Je Seung
Published: November 2021

X-type zeolite (XZ-Na) containing Na+ as a cation was synthesized, and XZ-Li and XZ-K were prepared by exchanging the cations of XZ-Na with Li+ and K+, respectively. The specific surface areas, structures, and chemical compositions of the prepared zeolites were analyzed by BET, XRD, and SEM-EDX. The activity of the direct and selective etherifications of glycerol to diglycerol (DG) and triglycerol (TG) were investigated using each zeolite XZ-M (M = Li, Na or K) as a basic heterogeneous catalyst. The etherification reactions of glycerol were carried out at atmospheric pressure while controlling the reaction temperature, reaction time, and the amount of each zeolite. As the amount of each zeolite, reaction time, and reaction temperature increased, the conversion of glycerol also increased, but the selectivities of DG and TG decreased due to the increase in the production of oligomers. When each zeolite was used as a catalyst, the catalytic activity for the conversion of glycerol was observed as XZ-K > XZ-Li > XZ-Na, but the selectivities of DG and TG were observed as XZ-Li > XZ-Na > XZ-K. Especially, 3 wt.% of XZ-Li exhibited the excellent catalytic performance when the etherification of glycerol was optimized and carried out at 280 °C for 2 h: the conversion of glycerol was 89.6% and the yields of DG and TG were 61.2 and 21.2%, respectively.
A Review and Experimental Revisit of Alternative Catalysts for Selective Oxidation of Methanol to Formaldehyde
Authors: Thrane Joachim , Mentzel Uffe V. , Thorhauge Max , Høj Martin , Jensen Anker D.
Published: November 2021

The selective oxidation of methanol to formaldehyde is a growing million-dollar industry, and has been commercial for close to a century. The Formox process, which is the largest production process today, utilizes an iron molybdate catalyst, which is highly selective, but has a short lifetime of 6 months due to volatilization of the active molybdenum oxide. Improvements of the process’s lifetime is, thus, desirable. This paper provides an overview of the efforts reported in the scientific literature to find alternative catalysts for the Formox process and critically assess these alternatives for their industrial potential. The catalysts can be grouped into three main categories: Mo containing, V containing, and those not containing Mo or V. Furthermore, selected interesting catalysts were synthesized, tested for their performance in the title reaction, and the results critically compared with previously published results. Lastly, an outlook on the progress for finding new catalytic materials is provided as well as suggestions for the future focus of Formox catalyst research.
Degradation of Anti-Inflammatory Drugs in Synthetic Wastewater by Solar Photocatalysis
Authors: Al-Jemeli Marwan , Mahmoud Mahmoud Abbas , Majdi Hasan Sh. , Abid Mohammad Fadhil , Abdullah Hiba M. , AbdulRazak Adnan A.
Published: November 2021

Due to the high number of anti-inflammatory drugs (AIMDs) used by the public health sector in Iraq and distributed all over the country and due to their toxicity, there is a need for an environmental-friendly technique to degrade any wasted (AIMD) present in aquatic ecosystem. The degradation of diclofenac sodium (DCF), ibuprofen (IBN), and mefenamic acid (MFA) in synthetic hospital wastewater were investigated utilizing locally-made Cu-coated TiO2 nanoparticles in a solar-irradiated reactor. Different key variables were studied for their effects on process efficiency, such as loadings of catalyst (C CU-TiO2 = 100–500 mg/L), AIMDs (100 µg/L), pH (4–9), and hydrogen peroxide (CH2O2 = 200–800 mg/L). The results revealed that degradation percentages of 96.5, 94.2, and 82.3%, were obtained for DCF, IBN, and MFA, respectively, using our Cu-coated TiO2 catalyst within 65 min at pH = 9, while other parameters were C CU-TiO2 = 300 mg/L, and CH2O2 = 400 mg/L. The experimental results revealed coupling photocatalysis with solar irradiation as a clean energy source could be utilized for the degradation of toxic pollutants in surface water.
Facing CAR T Cell Challenges on the Deadliest Paediatric Brain Tumours
Authors: Ferreras Cristina , Fernández Lucía , Clares-Villa Laura , Ibáñez-Navarro Marta , Martín-Cortázar Carla , Esteban-Rodríguez Isabel , Saceda Javier , Pérez-Martínez Antonio
Published: November 2021

Central nervous system (CNS) tumours comprise 25% of the paediatric cancer diagnoses and are the leading cause of cancer-related death in children. Current treatments for paediatric CNS tumours are far from optimal and fail for those that relapsed or are refractory to treatment. Besides, long-term sequelae in the developing brain make it mandatory to find new innovative approaches. Chimeric antigen receptor T cell (CAR T) therapy has increased survival in patients with B-cell malignancies, but the intrinsic biological characteristics of CNS tumours hamper their success. The location, heterogeneous antigen expression, limited infiltration of T cells into the tumour, the selective trafficking provided by the blood–brain barrier, and the immunosuppressive tumour microenvironment have emerged as the main hurdles that need to be overcome for the success of CAR T cell therapy. In this review, we will focus mainly on the characteristics of the deadliest high-grade CNS paediatric tumours (medulloblastoma, ependymoma, and high-grade gliomas) and the potential of CAR T cell therapy to increase survival and patients’ quality of life.
Medium-Chain Length Fatty Acids Enhance Aβ Degradation by Affecting Insulin-Degrading Enzyme
Authors: Mett Janine , Lauer Anna A. , Janitschke Daniel , Griebsch Lea V. , Theiss Elena L. , Grimm Heike S. , Koivisto Hennariikka , Tanila Heikki , Hartmann Tobias , Grimm Marcus O. W.
Published: November 2021

The accumulation of amyloid β-protein (Aβ) is one of the major pathological hallmarks of Alzheimer’s disease. Insulin-degrading enzyme (IDE), a zinc-metalloprotease, is a key enzyme involved in Aβ degradation, which, in addition to Aβ production, is critical for Aβ homeostasis. Here, we demonstrate that saturated medium-chain fatty acids (MCFAs) increase total Aβ degradation whereas longer saturated fatty acids result in an inhibition of its degradation, an effect which could not be detected in IDE knock-down cells. Further analysis of the underlying molecular mechanism revealed that MCFAs result in an increased exosomal IDE secretion, leading to an elevated extracellular and a decreased intracellular IDE level whereas gene expression of IDE was unaffected in dependence of the chain length. Additionally, MCFAs directly elevated the enzyme activity of recombinant IDE, while longer-chain length fatty acids resulted in an inhibited IDE activity. The effect of MCFAs on IDE activity could be confirmed in mice fed with a MCFA-enriched diet, revealing an increased IDE activity in serum. Our data underline that not only polyunsaturated fatty acids such as docosahexaenoic acid (DHA), but also short-chain fatty acids, highly enriched, for example in coconut oil, might be beneficial in preventing or treating Alzheimer’s disease.
Mitochondria in Diabetic Kidney Disease
Authors: Ahmad Amna Ayesha , Draves Shayna Odeal , Rosca Mariana
Published: November 2021

Diabetic kidney disease (DKD) is the leading cause of end stage renal disease (ESRD) in the USA. The pathogenesis of DKD is multifactorial and involves activation of multiple signaling pathways with merging outcomes including thickening of the basement membrane, podocyte loss, mesangial expansion, tubular atrophy, and interstitial inflammation and fibrosis. The glomerulo-tubular balance and tubule-glomerular feedback support an increased glomerular filtration and tubular reabsorption, with the latter relying heavily on ATP and increasing the energy demand. There is evidence that alterations in mitochondrial bioenergetics in kidney cells lead to these pathologic changes and contribute to the progression of DKD towards ESRD. This review will focus on the dialogue between alterations in bioenergetics in glomerular and tubular cells and its role in the development of DKD. Alterations in energy substrate selection, electron transport chain, ATP generation, oxidative stress, redox status, protein posttranslational modifications, mitochondrial dynamics, and quality control will be discussed. Understanding the role of bioenergetics in the progression of diabetic DKD may provide novel therapeutic approaches to delay its progression to ESRD.
Long-Term Transplant Effects of iPSC-RPE Monolayer in Immunodeficient RCS Rats
Authors: Rajendran Nair Deepthi S. , Zhu Danhong , Sharma Ruchi , Martinez Camarillo Juan Carlos , Bharti Kapil , Hinton David R. , Humayun Mark S. , Thomas Biju B.
Published: November 2021

Retinal pigment epithelium (RPE) replacement therapy is evolving as a feasible approach to treat age-related macular degeneration (AMD). In many preclinical studies, RPE cells are transplanted as a cell suspension into immunosuppressed animal eyes and transplant effects have been monitored only short-term. We investigated the long-term effects of human Induced pluripotent stem-cell-derived RPE (iPSC-RPE) transplants in an immunodeficient Royal College of Surgeons (RCS) rat model, in which RPE dysfunction led to photoreceptor degeneration. iPSC-RPE cultured as a polarized monolayer on a nanoengineered ultrathin parylene C scaffold was transplanted into the subretinal space of 28-day-old immunodeficient RCS rat pups and evaluated after 1, 4, and 11 months. Assessment at early time points showed good iPSC-RPE survival. The transplants remained as a monolayer, expressed RPE-specific markers, performed phagocytic function, and contributed to vision preservation. At 11-months post-implantation, RPE survival was observed in only 50% of the eyes that were concomitant with vision preservation. Loss of RPE monolayer characteristics at the 11-month time point was associated with peri-membrane fibrosis, immune reaction through the activation of macrophages (CD 68 expression), and the transition of cell fate (expression of mesenchymal markers). The overall study outcome supports the therapeutic potential of RPE grafts despite the loss of some transplant benefits during long-term observations.
DNMT3A and DNMT3B Targeting as an Effective Radiosensitizing Strategy in Embryonal Rhabdomyosarcoma
Authors: Camero Simona , Vitali Giulia , Pontecorvi Paola , Ceccarelli Simona , Anastasiadou Eleni , Cicchetti Francesca , Flex Elisabetta , Pomella Silvia , Cassandri Matteo , Rota Rossella , Marampon Francesco , Marchese Cinzia , Schiavetti Amalia , Megiorni Francesca
Published: November 2021

Rhabdomyosarcoma (RMS) is the most common soft tissue sarcoma in childhood. Recently, we demonstrated the overexpression of both DNA methyltransferase 3A (DNMT3A) and 3B (DNMT3B) in RMS tumour biopsies and cell lines compared to normal skeletal muscle. Radiotherapy may often fail due to the abnormal expression of some molecules able to drive resistance mechanisms. The aim of this study was to analyse the involvement of DNMT3A and DNMT3B in radioresistance in RMS. RNA interference experiments against DNMT3A/3B were performed in embryonal RMS cells, upon ionizing radiation (IR) exposure and the effects of the combined treatment on RMS cells were analysed. DNMT3A and DNMT3B knocking down increased the sensitivity of RMS cells to IR, as indicated by the drastic decrease of colony formation ability. Interestingly, DNMT3A/3B act in two different ways: DNMT3A silencing triggers the cellular senescence program by up-regulating p16 and p21, whilst DNMT3B depletion induces significant DNA damage and impairs the DNA repair machinery (ATM, DNA-PKcs and Rad51 reduction). Our findings demonstrate for the first time that DNMT3A and DNMT3B overexpression may contribute to radiotherapy failure, and their inhibition might be a promising radiosensitizing strategy, mainly in the treatment of patients with metastatic or recurrent RMS tumours.
Transcriptome Analysis of a Cotton Cultivar Provides Insights into the Differentially Expressed Genes Underlying Heightened Resistance to the Devastating Verticillium Wilt
Authors: Zhu He , Song Jian , Dhar Nikhilesh , Shan Ying , Ma Xi-Yue , Wang Xiao-Lei , Chen Jie-Yin , Dai Xiao-Feng , Li Ran , Wang Zi-Sheng
Published: November 2021

Cotton is an important economic crop worldwide. Verticillium wilt (VW) caused by Verticillium dahliae (V. dahliae) is a serious disease in cotton, resulting in massive yield losses and decline of fiber quality. Breeding resistant cotton cultivars is an efficient but elaborate method to improve the resistance of cotton against V. dahliae infection. However, the functional mechanism of several excellent VW resistant cotton cultivars is poorly understood at present. In our current study, we carried out RNA-seq to discover the differentially expressed genes (DEGs) in the roots of susceptible cotton Gossypium hirsutum cultivar Junmian 1 (J1) and resistant cotton G.hirsutum cultivar Liaomian 38 (L38) upon Vd991 inoculation at two time points compared with the mock inoculated control plants. The potential function of DEGs uniquely expressed in J1 and L38 was also analyzed by GO enrichment and KEGG pathway associations. Most DEGs were assigned to resistance-related functions. In addition, resistance gene analogues (RGAs) were identified and analyzed for their role in the heightened resistance of the L38 cultivar against the devastating Vd991. In summary, we analyzed the regulatory network of genes in the resistant cotton cultivar L38 during V. dahliae infection, providing a novel and comprehensive insight into VW resistance in cotton.
ACLY Nuclear Translocation in Human Macrophages Drives Proinflammatory Gene Expression by NF-κB Acetylation
Authors: Santarsiero Anna , Convertini Paolo , Todisco Simona , Pierri Ciro L. , De Grassi Anna , Williams Niamh C. , Iacobazzi Dominga , De Stefano Giulio , O’Neill Luke A. J. , Infantino Vittoria
Published: November 2021

Macrophage stimulation by pathogen-associated molecular patterns (PAMPs) like lipopolysaccharide (LPS) or lipoteichoic acid (LTA) drives a proinflammatory phenotype and induces a metabolic reprogramming to sustain the cell’s function. Nevertheless, the relationship between metabolic shifts and gene expression remains poorly explored. In this context, the metabolic enzyme ATP citrate lyase (ACLY), the producer of citrate-derived acetyl-coenzyme A (CoA), plays a critical role in supporting a proinflammatory response. Through immunocytochemistry and cytosol–nucleus fractionation, we found a short-term ACLY nuclear translocation. Protein immunoprecipitation unveiled the role of nuclear ACLY in NF-κB acetylation and in turn its full activation in human PBMC-derived macrophages. Notably, sepsis in the early hyperinflammatory phase triggers ACLY-mediated NF-κB acetylation. The ACLY/NF-κB axis increases the expression levels of proinflammatory genes, including SLC25A1—which encodes the mitochondrial citrate carrier—and ACLY, thus promoting the existence of a proinflammatory loop involving SLC25A1 and ACLY genes.
Transcriptome Profiling of Dysregulated GPCRs Reveals Overlapping Patterns across Psychiatric Disorders and Age-Disease Interactions
Authors: Monfared Roudabeh Vakil , Alhassen Wedad , Truong Tri Minh , Gonzales Michael Angelo Maglalang , Vachirakorntong Vincent , Chen Siwei , Baldi Pierre , Civelli Olivier , Alachkar Amal
Published: November 2021

G-protein-coupled receptors (GPCRs) play an integral role in the neurobiology of psychiatric disorders. Almost all neurotransmitters involved in psychiatric disorders act through GPCRs, and GPCRs are the most common targets of therapeutic drugs currently used in the treatment of psychiatric disorders. However, the roles of GPCRs in the etiology and pathophysiology of psychiatric disorders are not fully understood. Using publically available datasets, we performed a comprehensive analysis of the transcriptomic signatures of G-protein-linked signaling across the major psychiatric disorders: autism spectrum disorder (ASD), schizophrenia (SCZ), bipolar disorder (BP), and major depressive disorder (MDD). We also used the BrainSpan transcriptomic dataset of the developing human brain to examine whether GPCRs that exhibit chronological age-associated expressions have a higher tendency to be dysregulated in psychiatric disorders than age-independent GPCRs. We found that most GPCR genes were differentially expressed in the four disorders and that the GPCR superfamily as a gene cluster was overrepresented in the four disorders. We also identified a greater amplitude of gene expression changes in GPCRs than other gene families in the four psychiatric disorders. Further, dysregulated GPCRs overlapped across the four psychiatric disorders, with SCZ exhibiting the highest overlap with the three other disorders. Finally, the results revealed a greater tendency of age-associated GPCRs to be dysregulated in ASD than random GPCRs. Our results substantiate the central role of GPCR signaling pathways in the etiology and pathophysiology of psychiatric disorders. Furthermore, our study suggests that common GPCRs’ signaling may mediate distinct phenotypic presentations across psychiatric disorders. Consequently, targeting these GPCRs could serve as a common therapeutic strategy to treat specific clinical symptoms across psychiatric disorders.
Remnant of Unrelated Amniote Sex Chromosomal Linkage Sharing on the Same Chromosome in House Gecko Lizards, Providing a Better Understanding of the Ancestral Super-Sex Chromosome
Authors: Singchat Worapong , Panthum Thitipong , Ahmad Syed Farhan , Baicharoen Sudarath , Muangmai Narongrit , Duengkae Prateep , Griffin Darren K. , Srikulnath Kornsorn
Published: November 2021

Comparative chromosome maps investigating sex chromosomal linkage groups in amniotes and microsatellite repeat motifs of a male house gecko lizard (Hemidactylus frenatus, HFR) and a flat-tailed house gecko lizard (H. platyurus, HPL) of unknown sex were examined using 75 bacterial artificial chromosomes (BACs) from chicken and zebra finch genomes. No massive accumulations of microsatellite repeat motifs were found in either of the gecko lizards, but 10 out of 13 BACs mapped on HPL chromosomes were associated with other amniote sex chromosomes. Hybridization of the same BACs onto multiple different chromosome pairs suggested transitions to sex chromosomes across amniotes. No BAC hybridization signals were found on HFR chromosomes. However, HFR diverged from HPL about 30 million years ago, possibly due to intrachromosomal rearrangements occurring in the HFR lineage. By contrast, heterochromatin likely reshuffled patterns between HPL and HFR, as observed from C-positive heterochromatin distribution. Six out of ten BACs showed partial homology with squamate reptile chromosome 2 (SR2) and snake Z and/or W sex chromosomes. The gecko lizard showed shared unrelated sex chromosomal linkages—the remnants of a super-sex chromosome. A large ancestral super-sex chromosome showed a correlation between SR2 and snake W sex chromosomes.
The Role of Immune Cells in Oxi-Inflamm-Aging
Authors: Martínez de Toda Irene , Ceprián Noemi , Díaz-Del Cerro Estefanía , De la Fuente Mónica
Published: November 2021

Aging is the result of the deterioration of the homeostatic systems (nervous, endocrine, and immune systems), which preserve the organism’s health. We propose that the age-related impairment of these systems is due to the establishment of a chronic oxidative stress situation that leads to low-grade chronic inflammation throughout the immune system’s activity. It is known that the immune system weakens with age, which increases morbidity and mortality. In this context, we describe how the function of immune cells can be used as an indicator of the rate of aging of an individual. In addition to this passive role as a marker, we describe how the immune system can work as a driver of aging by amplifying the oxidative-inflammatory stress associated with aging (oxi-inflamm-aging) and inducing senescence in far tissue cells. Further supporting our theory, we discuss how certain lifestyle conditions (such as social environment, nutrition, or exercise) can have an impact on longevity by affecting the oxidative and inflammatory state of immune cells, regulating immunosenescence and its contribution to oxi-inflamm-aging.
Trogocytosis in Unicellular Eukaryotes
Authors: Nakada-Tsukui Kumiko , Nozaki Tomoyoshi
Published: November 2021

Trogocytosis is a mode of internalization of a part of a live cell by nibbling and is mechanistically distinct from phagocytosis, which implies internalization of a whole cell or a particle. Trogocytosis has been demonstrated in a broad range of cell types in multicellular organisms and is also known to be involved in a plethora of functions. In immune cells, trogocytosis is involved in the “cross-dressing” between antigen presenting cells and T cells, and is thus considered to mediate intercellular communication. On the other hand, trogocytosis has also been reported in a variety of unicellular organisms including the protistan (protozoan) parasite Entamoeba histolytica. E. histolytica ingests human T cell line by trogocytosis and acquires complement resistance and cross-dresses major histocompatibility complex (MHC) class I on the cell surface. Furthermore, trogocytosis and trogocytosis-like phenomena (nibbling of a live cell, not previously described as trogocytosis) have also been reported in other parasitic protists such as Trichomonas, Plasmodium, Toxoplasma, and free-living amoebae. Thus, trogocytosis is conserved in diverse eukaryotic supergroups as a means of intercellular communication. It is depicting the universality of trogocytosis among eukaryotes. In this review, we summarize our current understanding of trogocytosis in unicellular organisms, including the history of its discovery, taxonomical distribution, roles, and molecular mechanisms.
The Interplay between the Unfolded Protein Response, Inflammation and Infection in Cystic Fibrosis
Authors: Trouvé Pascal , Férec Claude , Génin Emmanuelle
Published: November 2021

In cystic fibrosis (CF), p.Phe508del is the most frequent mutation in the Cystic Fibrosis Transmembrane conductance Regulator (CFTR) gene. The p.Phe508del-CFTR protein is retained in the ER and rapidly degraded. This retention likely triggers an atypical Unfolded Protein Response (UPR) involving ATF6, which reduces the expression of p.Phe508del-CFTR. There are still some debates on the role of the UPR in CF: could it be triggered by the accumulation of misfolded CFTR proteins in the endoplasmic reticulum as was proposed for the most common CFTR mutation p.Phe508del? Or, is it the consequence of inflammation and infection that occur in the disease? In this review, we summarize recent findings on UPR in CF and show how infection, inflammation and UPR act together in CF. We propose to rethink their respective role in CF and to consider them as a whole.
In-Depth Annotation of the Drosophila Bithorax-Complex Reveals the Presence of Several Alternative ORFs That Could Encode for Motif-Rich Peptides
Authors: Naville Magali , Merabet Samir
Published: November 2021

It is recognized that a large proportion of eukaryotic RNAs and proteins is not produced from conventional genes but from short and alternative (alt) open reading frames (ORFs) that are not captured by gene prediction programs. Here we present an in silico prediction of altORFs by applying several selecting filters based on evolutionary conservation and annotations of previously characterized altORF peptides. Our work was performed in the Bithorax-complex (BX-C), which was one of the first genomic regions described to contain long non-coding RNAs in Drosophila. We showed that several altORFs could be predicted from coding and non-coding sequences of BX-C. In addition, the selected altORFs encode for proteins that contain several interesting molecular features, such as the presence of transmembrane helices or a general propensity to be rich in short interaction motifs. Of particular interest, one altORF encodes for a protein that contains a peptide sequence found in specific isoforms of two Drosophila Hox proteins. Our work thus suggests that several altORF proteins could be produced from a particular genomic region known for its critical role during Drosophila embryonic development. The molecular signatures of these altORF proteins further suggests that several of them could make numerous protein–protein interactions and be of functional importance in vivo.
Rho GTPases in Skeletal Muscle Development and Homeostasis
Authors: Rodríguez-Fdez Sonia , Bustelo Xosé R.
Published: November 2021

Rho guanosine triphosphate hydrolases (GTPases) are molecular switches that cycle between an inactive guanosine diphosphate (GDP)-bound and an active guanosine triphosphate (GTP)-bound state during signal transduction. As such, they regulate a wide range of both cellular and physiological processes. In this review, we will summarize recent work on the role of Rho GTPase-regulated pathways in skeletal muscle development, regeneration, tissue mass homeostatic balance, and metabolism. In addition, we will present current evidence that links the dysregulation of these GTPases with diseases caused by skeletal muscle dysfunction. Overall, this information underscores the critical role of a number of members of the Rho GTPase subfamily in muscle development and the overall metabolic balance of mammalian species.
Characteristics of Children Likely to Have Spontaneous Resolution of Obstructive Sleep Apnea: Results from the Childhood Adenotonsillectomy Trial (CHAT)
Authors: Magnusdottir Solveig , Hilmisson Hugi , Raymann Roy J. E. M. , Witmans Manisha
Published: November 2021

Objective: To evaluate if cardiopulmonary coupling (CPC) calculated sleep quality (SQI) may have a role in identifying children that may benefit from other intervention than early adenotonsillectomy (eAT) in management of obstructive sleep apnea (OSA). Methods: A secondary analysis of electrocardiogram-signals (ECG) and oxygen saturation-data (SpO2) collected during polysomnography-studies in the prospective multicenter Childhood Adenotonsillectomy Trial (CHAT) to calculate CPC-SQI and apnea hypopnea index (AHI) was executed. In the CHAT, children 5–9 years with OSA without prolonged oxyhemoglobin desaturations were randomly assigned to adenotonsillectomy (eAT) or watchful waiting with supportive care (WWSC). The primary outcomes were to document change in attention and executive function evaluated with the Developmental Neuropsychological Assessment (NEPSY). In our analysis, children in the WWSC-group with spontaneous resolution of OSA (AHIObstructive < 1.0) and high-sleep quality (SQI ≥ 75) after 7-months were compared with children that showed residual OSA. Results: Of the 227 children randomized to WWSC, 203 children had available data at both baseline and 7-month follow-up. The group that showed resolution of OSA at month 7 (n = 43, 21%) were significantly more likely to have high baseline SQI 79.96 [CI95% 75.05, 84.86] vs. 72.44 [CI95% 69.50, 75.39], p = 0.005, mild OSA AHIObstructive 4.01 [CI95% 2.34, 5.68] vs. 6.52 [CI95% 5.47, 7.57], p= 0.005, higher NEPSY-attention-executive function score 106.22 [CI95% 101.67, 110.77] vs. 101.14 [CI95% 98.58, 103.72], p = 0.038 and better quality of life according to parents 83.74 [CI95% 78.95, 88.54] vs. 77.51 [74.49, 80.53], p = 0.015. The groups did not differ when clinically evaluated by Mallampati score, Friedman palate position or sleep related questionnaires. Conclusions: Children that showed resolution of OSA were more likely to have high-SQI and mild OSA, be healthy-weight and have better attention and executive function and quality of life at baseline. As this simple method to evaluate sleep quality and OSA is based on analyzing signals that are simple to collect, the method is practical for sleep-testing, over multiple nights and on multiple occasions. This method may assist physicians and parents to determine the most appropriate therapy for their child as some children may benefit from WWSC rather than interventions. If the parameters can be used to plan care a priori, this would provide a fundamental shift in how childhood OSA is diagnosed and managed.
Major Complication Following Kawasaki Disease in an Infant—The Development of Apical Infarction and Aneurysm Formation
Authors: Menahem Samuel , Lefkovits Jeffrey
Published: November 2021

Considerable advances have occurred in the understanding of Kawasaki disease, with a substantial drop in morbidity and mortality following the infusion of gamma globulin during the acute phase. Nevertheless, major complications may still occur. A 27-year-old male presented as an infant of 11 weeks when he was diagnosed as having Kawasaki disease. He was appropriately treated with aspirin and a gamma globulin infusion following his diagnosis 5 days after the onset of his illness. Despite that, he went on to develop coronary aneurysms. He represented a few weeks later with a history of inconsolable crying associated with pallor, suggestive of ischaemic chest pain. A repeat echocardiogram revealed infarction of the apex of the left ventricle with localised thrombus formation. There were persistent aneurysms within both coronary artery systems. A further infusion of gamma globulin was given. In view of the thrombus formation, he was started on warfarin. The thrombus gradually resolved with the development of a clearly defined left ventricular apical aneurysm. He has remained on warfarin, aiming for an international normalised ratio (INR) level of 2 to 2.5. He developed mild left ventricular dysfunction during late childhood, which improved following the commencement of an angiotensin-converting enzyme (ACE) inhibitor. Despite his ventricular aneurysm, there has been no documented evidence of ventricular tachycardia over the years. Repeated testing initially by nuclear perfusion scans and then by stress echocardiograms failed to show any inducible ischaemia apart from the apical ventricular aneurysm. A recent computed tomography (CT) coronary angiogram revealed an ectatic origin of the left main and the right coronary arteries with mild calcification involving the mid-portion of the latter and slight calcification of the former. His raised cholesterol level has responded well to a statin. Despite the persistence of the ventricular aneurysm, he continues to be managed conservatively, as he has remained well. The question arises as to what the long-term implications are of his left ventricle apical aneurysm. Should it be excised? Is he at risk for ventricular tachycardia and sudden death? In addition, although the coronary aneurysms have resolved, the CT coronary angiogram shows calcium plaques in both coronary arteries at the site of the earlier aneurysms. This finding raises the question as to whether all children who develop coronary artery aneurysms following Kawasaki disease should have a CT coronary angiogram performed in adulthood.
Polysomnography Is an Important Method for Diagnosing Pediatric Sleep Problems: Experience of One Children’s Hospital
Authors: Lin Chien-Heng , Chen Chieh-Ho , Hong Syuan-Yu , Chou I-Ching , Liang Shinn-Jye , Hang Liang-Wen
Published: November 2021

In this study, we collected and analyzed polysomnography (PSG) data to investigate the value of PSG in diagnosing sleep problems in children. The results of PSG studies of children (<18 years old) with sleep problems conducted from April 2015 to May 2017 at a children’s hospital in Taiwan were collected and analyzed retrospectively. Data for 310 patients (209 males and 101 females) who underwent PSG were collected. The final diagnoses were as follows: obstructive sleep apnea in 159 (51.3%), snoring in 81 (26.4%), limb movement sleep disorder in 25 (8.1%), hypersomnias in 12 (3.9%), central apnea in 8 (2.9%), enuresis in 7 (2.3%), bruxism in 5 (1.6%), sleep terrors in 5 (1.6%), narcolepsy in 3 (1.0%), sleep seizures in 3 (1.0%), sleep walking in 1 (0.3%), and insomnia in 1 (0.3%). PSG may help detect significant sleep-related problems in children and is useful for making therapeutic decisions regarding children. Obstructive sleep apnea syndrome (OSAS) was the primary sleep problem for most of the children (51.3%); however, only 7.4% of them underwent surgery for OSAS. We therefore suggest that children with sleep problems should undergo PSG.
Rapid Microwave-Assisted Synthesis of Organo-Modified Nanostructured Silica Coatings with Tunable Water-Repellence Properties
Authors: Gȋfu Catalina Ioana , Trică Bogdan , Ninciuleanu Claudia Mihaela , Mihăescu Cătălin Ionuţ , Petcu Cristian , Lite Mihaela Cristina , Popescu Alina , Anastasescu Mihai , Voicu Sorina Nicoleta , Tanase Maria Antonia , Cinteza Ludmila Otilia
Published: November 2021

A simple method to fabricate organo-modified silane coatings for water-repellent surface modification was proposed, by using a microwave sol-gel synthesis of hybrid materials. Low-cost fluorine-free tetraethoxysilane (TEOS) and dodecyltriethoxysilane (DDTES) were used as silane derivatives. The organo-modified silica coatings were prepared by the drop-casting method and were characterized by UV-VIS, FTIR spectroscopy, and AFM and SEM microscopy. The morphology of the film show the existence of submicrometer scale roughness due to the aggregation of modified silica nanoparticles. Contact angles of water and diiodomethane on surfaces modified with as prepared nanostructured film were determined in order to assess the hydrophobic and oleophobic properties. The TEOS/DDTES ratio was proved to be a crucial factor in tuning the wettability properties. The results suggest that significant increase of hydrophobicity could be achieved by using non-fluorinated cost-effective silica nanomaterials produced with a rapid ecofriendly method.
Assessment of Selected Properties of Varnish Coating of Motor Vehicles
Authors: Ulbrich Dariusz , Kowalczyk Jakub , Jósko Marian , Sawczuk Wojciech , Chudyk Przemyslaw
Published: November 2021

The technology and methods of testing the properties of varnish coatings used in motor vehicles are constantly and successfully developed. However, in the case of automotive varnish renovation coatings used in the repair of car bodies, the problem of fitting the quality of these coatings to the quality and current condition of the coating applied to undamaged vehicle components is not definitely solved. The main goal of the research was to determine the thickness and gloss distribution of the varnish coatings. The thickness and gloss of the varnish coating on the entire body of the vehicle were measured. Classical methods of assessing these properties were used. Defects in the renovation coating were also simulated, to show their negative impact on the varnish quality. The performed tests allowed for development of a procedure and algorithm for evaluation of the quality of the car’s renovation coating after the repair of the car body. The proposed procedure, expressed with the presented algorithm, allows to fit the obtained renovation coating to the quality and condition of the coating manufactured in factory on the car body in the range of its thickness up to 270 µm and gloss in the range of 5–90 GU. The developed procedure for the assessment of renovation coatings can be used in workshops that repair vehicle bodies. This will allow to improve the quality of renovation coatings and bring their properties, such as thickness or gloss, closer to those applied to the vehicle’s body at the factory.
Microstructure and Meso-Mechanical Properties of Asphalt Mixture Modified by Rubber Powder under a Multi-Scale Effect
Authors: Yang Sanqiang , Sun Shuang , Qin Lusheng , Li Qian
Published: November 2021

The applications of rubber-modified asphalt and its mixtures have received widespread attention due to the environmental and economic benefits of such materials. However, studies on the structural performance of rubber-powder-modified asphalt pavement are only concentrated on a certain scale, leading to research on the structural performance of pavement mostly focusing on mechanical responses at a macro scale. Therefore, the present study adopts the concept of multi-scale research to analyze the viscoelasticity of high-dosage-modified asphalt and its mixtures at a microscopic scale from the perspective of meso-mechanical analysis. In this paper, to ensure the overall durability of a structure, the effective asphalt film thickness and coarse aggregate angularity index of the test material were measured first. The viscoelasticity of asphalt modified with rubber powder was then analyzed using a Brinell viscosity test, scanning electron microscopy (SEM), and a dynamic shear rheometer (DSR). We determined the optimal amount of rubber powder to be 30%. A universal testing machine was used to study the influence of different temperatures and loading frequencies on the viscoelastic properties of different asphalt mixtures. Research on the dynamic modulus found that the incorporation of rubber powder increases the elastic properties of the mixture such that the rubber-powder-modified asphalt mixture had a higher dynamic modulus. At the same time, the high-dosage-modified asphalt mixture was found to be closer to an elastomer under a low temperature and high frequency. At a high temperature and low frequency, the asphalt mixture changed into a viscoelastic body whose viscous properties were mainly affected by the asphalt binder. The addition of rubber powder changed the temperature sensitivity of the asphalt and then affected the viscoelastic properties of the asphalt mixture.
Evaporation Effect on Thickness Distribution for Spin-Coated Films on Rectangular and Circular Substrates
Authors: Yan Ying , Li Jiarun , Liu Qiuyu , Zhou Ping
Published: November 2021

Spin-coating is widely applied in the field of thin-film fabrication due to its simplicity and high film uniformity. To prepare thin films on rectangular substrates by spin-coating, the simulation and experimental methods were used to study the characteristics of the film thickness in this work. The two-phase flow simulations of spin-coating on a rectangular substrate and circular substrate were carried out with the volume of fluid (VOF) method. The simulation results showed that the airflow field and the substrate geometry had little effect on the evolution of spin-coated film thickness. However, in the experimental results, there was a significant difference in the thickness of the spin-coated film on the rectangular substrate and the circular substrate. According to further study, the solvent evaporation that was neglected in the simulation was the dominant factor of the differences. In addition, it was concluded that the non-uniform evaporation caused by the surface tension and edge accumulation in the later spin-coating stage was the main reason for the film accumulation of the windward area on the rectangular substrate. This work is useful to obtain a deeper understanding of the thin-film formation mechanism of spin-coating.
Shear Bond Strength of Ceramic Veneers to Zirconia–Calcium Silicate Cores
Authors: Chiang Ting-Yi , Yang Chun-Chuan , Chen Yi-Hsuan , Yan Min , Ding Shinn-Jyh
Published: November 2021

Improving the bond strength of veneering ceramics to ZrO2-based cores remains a challenge. The purpose of this study was to evaluate the shear bond strength of different ZrO2 cores containing calcium silicate (CaSi) to veneering ceramics. Five types of ZrO2-based cores (n = 230) were divided into two groups: with or without oxygen plasma treatment. These were bound to two veneering ceramics (IPS e.max Ceram or VITA VM9). Shear bond strength of veneering ceramics to various cores was measured (n = 10), in addition to phase composition, surface morphology and contact angle of the cores. The results indicated that the plasma treatment had a significant effect on the water contact angle of the ZrO2-based cores, but had little effect on the bond strength. Regardless of plasma treatment, the highest strength value was recorded in the ZrO2 core specimen containing 20 wt % CaSi, when all cores were adhered to VITA VM 9 veneer. When using IPS e.max Ceram veneer, the shear bond strength of the plasma-treated 20 wt % CaSi-containing ZrO2 core was 16.6 ± 0.9 MPa higher than that of VITA In-Ceram YZ core control (13.4 ± 1.0 MPa) (p < 0.05). We conclude that the presence of 20 wt % CaSi in ZrO2 can improve the shear bond strength of zirconia-based cores to veneering ceramic.