bluuebunny/crossref_metadata_2025 huggingface dataset:
Rotating Algae Biofilm Reactor for Management and Valorization of Produced Wastewater
Authors: Wood Jonathan L. , Takemoto Jon Y. , Sims Ronald C.
Published: January 2022

Production and enhancement of high value phycocyanin pigment from microalgae biofilms cultured on oilfield and natural gas produced wastewater were investigated. Cyanobacteria isolated from Logan City, Utah, wastewater treatment Lagoons (LLC2) was cultured in produced water using rotating algal biofilm reactors (RABRs). The RABRs were operated under “low” and “high” light conditions and biomass and phycocyanin content were compared. Phycocyanin content was enhanced by growth under low light conditions to a maximum yield of 31.7 mg/g ash-free dry weight (AFDW) biomass for an 87.6% increase in phycocyanin yield. Phycocyanin productivity was equivalent for both the low and high light treatments (327 ± 81 and 305 ± 39 mg/m2/day, respectively), due to the significantly lower AFDW biomass productivity of the low light treatment (2.7 ± 0.4 g/m2-day). An indoor laboratory evaluation of 14 substrata for biofilm growth showed that cotton rope and cotton belt material provided the highest biomass yields. Further evaluation in a pilot-scale outdoor produced wastewater pond showed that the biomass characteristics from the two substrata differed. The corrugated surface area of the cotton rope cultured a biofilm with a large community of non-photosynthetic organisms with an autotrophic index of 507 and a low phycocyanin yield of 3.4 mg/g AFDW. However, the cotton belt substratum cultured a healthy photosynthetic biofilm with an autotrophic index of 127 and a phycocyanin yield of 47.0 mg/g AFDW. These results demonstrate the cultivation of microalgae biomass and valorization of oilfield and natural gas produced wastewater through the design and management of algal-based biofilm photobioreactors.
Development of a Low-Cost Device for Measuring Ultraviolet Solar Radiation
Authors: Serrano Antonio , Abril-Gago Jesús , García-Orellana Carlos J.
Published: January 2022

Accurate measurements of solar ultraviolet radiation are needed for air quality monitoring, especially to understand the formation and photolysis of tropospheric ozone near the ground. It is interesting to investigate whether this demand could be met using recently developed low-cost UV sensors and new communication technologies. Despite the promising possibilities, their use is still scarce and their potential applications have not yet been thoroughly explored. This study aims to use low-cost sensors to develop devices that accurately measure solar ultraviolet radiation. The de vices should be low-cost, small, portable, and have low power consumption and IoT connectivity. For this purpose, three popular low-cost commercial sensors ML8511, UVM30A and VEML6075 are selected and implemented in several prototypes. The sensors are analyzed in terms of their spectral response, leveling, angular response and comparison with reference data. For that aim, experimental measurements are performed at the radiometric station of the Physics Department of the University of Extremadura in Badajoz, Spain. Results indicate that sensors of the same model might have different calibrations. The leveling and the angular response measurements indicate a strong azimuth dependence for the ML8511 and, especially, VEML6075 sensors, while the UVM30A sensor shows a much weaker dependence, probably due to the use of a circular diffuser. The angular response is identified as the main issue of the sensors, notably limiting their accuracy and preventing a widespread use. With the knowledge gained, a final version with LoRa communication and optimized power consumption is developed. The strength of the LoRa connection is measured at different locations on the University Campus using Receiver Signal Strength Indication. It ranges from -27 dB near the gateway to -122 dB at the farthest location on the Campus. The optimization of the power consumption allows 14 days of autonomy if operating only during daylight hours. The study illustrates the suitability of low-cost sensors for UV applications, provided that a good angular response of the sensors is ensured. It contributes to a wider use of these sensors for the measurement of air quality variables by identifying those characteristics that need to be improved by manufacturers to meet the standards.
A Multicriteria Decision-Making Approach in Exploring the Nexus Between Wind and Solar Energy Generation, Economic Development, Fossil Fuel Consumption, and CO2 Emissions
Authors: Rehman Shazia , Rehman Erum , Mumtaz Ayesha , Jianglin Zhang
Published: January 2022

Environmental degradation has been identified as a major worldwide concern in recent decades, with CO2 emissions considered as one of the primary drivers of this catastrophe. This study creatively analyzes the underlying impact of wind and solar energy generation, economic development, fossil fuel consumption on CO2 emissions to mitigate the environmental degradation in the world’s top three largest energy consumers and CO2 emitters nations namely, China, India, and the USA. To investigate the integrated impact of CO2 emission, a grey relational analysis (GRA) technique is adopted for the year 1990–2017. The Grey technique for order of preference by similarity to ideal solution (G-TOPSIS) technique was employed for further optimization by prioritizing the explanatory factors that have potential influence on CO2 emissions in the selected nations. The outcomes through the GRA technique discovered that India is a major contributor of carbon emission caused by economic development, and China appeared to be the more afflicted nation for raising its carbon emissions owing to fossil fuel consumption. Whereas, the generation of solar and wind energy are grounded factors in the reduction of carbon emissions for China and the USA. In addition, the generation of wind energy showed a considerable impact in the reduction of CO2 emissions, based on the G-TOPSIS analysis. This suggests that reducing CO2 emissions would require a compendious transition from nonrenewable to renewable resources, while the United States and China appear to be on a more promising direction to environmental sustainability than India. As a growing renewable energy pioneer, India should increase the utilization of minimal carbon sources of energy in its electricity grid while limiting its reliance on fossil fuels. The findings of the study potentially aid governments and policymakers in making better decisions and investments to mitigate CO2 emissions while fostering a more environmentally friendly atmosphere.
Factors Driving the Abundance of Wintering Waterbirds in Coastal Areas of Guangdong Province, China
Authors: Yang Xitao , Duan Zhizhao , Li Shuangshuang , Zhang Chunxia , Qu Ming , Hua Guodong , Niu Xiaonan , Hu Huijian , Yu Dongmei
Published: January 2022

The diverse habitat of the coastal areas of Guangdong, China, supports important waterbird populations, thereby contributing to the conservation of waterbirds in China and globally. The sensitivity of different waterbirds to environmental driving factors results in differences in habitat selection, which in combination affect waterbird abundance. This study investigated the effects of environmental and human disturbance factors on the abundance of waterbirds based on a survey of waterbirds in coastal areas of Guangdong Province, China. Redundancy analysis (RDA) was mainly used to study the relationships between the abundance of waterbirds and environmental and human factors. The results showed that the areas of mangrove and tidal flats were the main factors driving the abundance of shorebirds and open water waterbirds, whereas the areas of mangrove and water bodies were the main factors driving the abundance of wading birds and waterfowl, respectively. Road length and the areas of construction land were found to have negative effects on the abundance of waterbirds. A waterbird protection and management strategy was proposed based on the results.
Identification of QTLs Linked to Phenological and Morphological Traits in RILs Population of Horsegram (Macrotyloma uniflorum)
Authors: Katoch Megha , Mane Rushikesh Sanjay , Chahota Rakesh Kumar
Published: January 2022

Horsegram [Macrotyloma uniflorum (Lam.) Verdc.] is an important legume but understudied in terms of its genetic improvement. Genetic information on various phenological and morphological traits may help in the utilization of new genes for breeding in horsegram and thus affect agronomic practices and crop yield. A total of 162 recombinant inbred lines derived from intraspecific crosses between HPKM249 × HPK4 was used to construct a genetic linkage map and to identify quantitative trait loci (QTLs) associated with phenological and morphological traits. Of the total 2011 molecular markers, which were screened on parental lines for polymorphism survey, 493 markers were found to be polymorphic and used for genotyping of recombinant inbred line population. Out of 493 polymorphic markers, 295 were mapped on ten linkage groups at LOD 3.5 spanning a total distance of 1,541.7 cM with an average distance between markers of 5.20 cM. Phenotypic data of two years at two different locations were used to identify QTLs by composite interval mapping A total of four QTLs (LOD ≥2.5) for phenological traits (days to 50% flowering, reproductive period and days to maturity) and seven QTLs (LOD ≥2.5) for morphological traits (plant height, primary branches and secondary branches) were detected across different environments. The phenotypic variation explained by QTLs ranged from 6.36 to 47.53%. The present study will help to augment scanty genomic information in this orphan crop that would provide genomics tools to breeders for its genetic enhancement through molecular-assisted selection.
Origin and Demographic History of Philippine Pigs Inferred from Mitochondrial DNA
Authors: Layos John King N. , Godinez Cyrill John P. , Liao Lawrence M. , Yamamoto Yoshio , Masangkay Joseph S. , Mannen Hideyuki , Nishibori Masahide
Published: January 2022

The Philippines is a mega-diverse country that lies at the crossroads of past human migrations in the Asia-Pacific region and is believed to have never been connected to the Asian continent, even during the major sea-level subsidence of the Quaternary. As a result, the history of pig dispersal in the Philippines remains controversial, due to limited molecular studies and absence of archaeological evidence of pig domestication. This study provides the first comprehensive analysis of 184 complete mitochondrial DNA D-loop region from Philippine pigs to elucidate their early dispersal history by performing a phylogenetic comparison with wild boars and domestic pigs worldwide. The results showed a demographic signal of the ancestry of Philippine pigs that had a close genetic relationship with those from the mainland Southeast Asia and Northeast Asia, suggesting gene flow that may have resulted from human migration and trade. Here we have suggested two possible dispersal routes. One parallels the Neolithic expansion in Island Southeast Asia and Oceania via Northeast Asia, the other from the mainland Southeast Asia, into Palawan and Sulu Archipelago as early as prehistoric times via the Sundaic Region. Despite geographic barriers to migration, numerous genetic lineages have persisted across the Philippine islands, even justifying the recognition of a Philippine Lanyu subclade. The prehistoric population history suggests a demographic expansion that coincided with the interglacial periods of the Pleistocene and may have spread from the southern regions into the eastern and central regions of the Philippines. The intriguing signal of discrepancy discovered between the ancestral pattern and distribution range of the numerous endemic Philippine wild pigs opens a challenging new approach to illuminate complexity among these animals. Our study has contributed significantly towards completing the sparse molecular studies on Philippine pigs, an essential for creating win-win conservation measures.
No Causal Association Between Coffee Consumption and Risk of Migraine: A Mendelian Randomization Study
Authors: Chen Heng , Zhang Han , Zheng Liangrong
Published: January 2022

Background and Aims: Coffee consumption has been suggested to increase the risk of migraine. However, causality remains inconclusive. In the present study, we performed a two-sample Mendelian randomization (MR) analysis to investigate the causal relationship between coffee consumption and migraine.

Methods: We obtained nine single-nucleotide polymorphisms (SNPs) associated with coffee consumption at genome-wide significance (p < 5 × 10−8) from a large genome-wide association study (GWAS) based on the UK Biobank study (included 375,833 individuals). Summary-level data for any migraine (AM) and its subtypes (migraine with aura (MA) and migraine without aura (MO)) were obtained from the largest available GWAS of migraine conducted by the International Headache Genetics Consortium (IHGC) (included 59,674 cases and 316,078 controls). MR estimates were pooled using fixed-effect inverse-variance weighted (IVW) as the main method. Sensitivity analyses were further performed using weighted median, MR-Egger, and MR-PRESSO to assess the robustness of our findings.

Results: Genetically-predicted 50% increase of coffee consumption was not causally associated with the risk of AM (odds ratio (OR), 0.97; 95% confidence interval (CI), 0.83–1.14; p = 0.71), MA (OR, 0.81; 95%CI, 0.58, 1.12; p = 0.19), or MO (OR, 0.97; 95%CI, 0.72, 1.30; p = 0.83) in the fixed-effect IVW methods. Sensitivity analyses returned similar results. No directional pleiotropy was found.

Conclusion: This MR study does not support a causal relationship between genetically predicted coffee consumption and the risk of migraine. Coffee consumption is likely not a trigger nor a prevention strategy for migraine headaches.
Analysis of Chloroplast Genomes Provides Insights Into the Evolution of Agropyron
Authors: Han Huijie , Qiu Rui , Liu Yefei , Zhou Xinyue , Gao Cuiping , Pang Yongzhen , Zhao Yan
Published: January 2022

Plants of the Agropyron genus are important pasture resources, and they also play important roles in the ecological restoration. Chloroplast genomes are inherited from maternal parents, and they are important for studying species taxonomy and evolution. In this study, we sequenced the complete chloroplast genomes of five typical species of the Agropyron genus (eg., A. cristatum × A. desertorum Fisch. Schult, A. desertorum, A. desertorum Fisch. Schult. cv. Nordan, A. michnoi Roshev, and A. mongolicum Keng) using the Illumina NovaSeq platform. We found that these five chloroplast genomes exhibit a typical quadripartite structure with a conserved genome arrangement and structure. Their chloroplast genomes contain the large single-copy regions (LSC, 79,613 bp-79,634 bp), the small single-copy regions (SSC, 12,760 bp-12,768 bp), and the inverted repeat regions (IR, 43,060 bp-43,090 bp). Each of the five chloroplast genomes contains 129 genes, including 38 tRNA genes, eight rRNA genes, and 83 protein-coding genes. Among them, the genes trnG-GCC, matK, petL, ccsA, and rpl32 showed significant nucleotide diversity in these five species, and they may be used as molecular markers in taxonomic studies. Phylogenetic analysis showed that A. mongolicum is closely related to A. michnoi, while others have a closer genetic relationship with the Triticum genus.
The Role of IgG4 in Autoimmunity and Rheumatic Diseases
Authors: Maslinska Maria , Dmowska-Chalaba Joanna , Jakubaszek Michal
Published: January 2022

The distinguishing of the IgG4-related disease (IgG4-RD) from among other rheumatic diseases has brought attention to the IgG4 subclass of immunoglobulins. It is the least numerous subclass among immunoglobulins G. In general, IgG4 is considered to be non-inflammatory and tolerance inducing, due to its unique structure. However, in IgG4-RD this antibody plays a pathogenic role in activation of the fibrinogenesis and of the inflammatory process; there are also suggestions that it may be a marker of an abnormal inflammatory response. The importance of IgG4 for the pathogenesis of allergic diseases, with a vital role of its ratio to immunoglobulin E (IgE/IgG4 ratio), has been known for years. The role of IgG4 in the course and pathogenesis of rheumatic diseases is still being researched and is not yet fully understood. Increased IgG4 levels have been revealed in rheumatoid arthritis, although no clear link between this phenomenon and disease activity has been demonstrated. There are articles on the potential importance of IgG4 concentration (of both elevated and decreased serum levels) in Sjogren’s syndrome. Additionally, anti-nuclear IgG4 antibody significant titers have been detected in SLE patients, and it has been suggested that the effect of these antibodies on complement consumption and the production of proinflammatory cytokines may play a role in inhibiting the progression of SLE. IgG4 plays a role in autoimmune diseases other than rheumatic diseases, such as pemphigus, bullous pemphigoid, idiopathic membranous glomerulonephritis, or myasthenia gravis, but also in helmints infections. Research shows the importance of IgG4 in malignancy of neoplasms. Melanoma cells are known to stimulate IgG4 production through a modified Th2-based inflammatory response. The role of this immunoglobulin in cholangiocarcinoma is also considered as possible. The aim of this review article is to discuss the current knowledge of IgG4 not only from the perspective of the IgG4-RD but also from a point of view of other autoimmune diseases with particular emphasis on rheumatic diseases.
Histone Acetylation Regulator-Mediated Acetylation Patterns Define Tumor Malignant Pathways and Tumor Microenvironment in Hepatocellular Carcinoma
Authors: Xu Yuyan , Liao Wei , Luo Qiong , Yang Dinghua , Pan Mingxin
Published: January 2022

Background

Histone acetylation modification is one of the most common epigenetic methods used to regulate chromatin structure, DNA repair, and gene expression. Existing research has focused on the importance of histone acetylation in regulating tumorigenicity, tumor progression, and tumor microenvironment (TME) but has not explored the potential roles and interactions of histone acetylation regulators in TME cell infiltration, drug sensitivity, and immunotherapy.

Methods

The mRNA expression and genetic alterations of 36 histone acetylation regulators were analyzed in 1599 hepatocellular carcinoma (HCC) samples. The unsupervised clustering method was used to identify the histone acetylation patterns. Then, based on their differentially expressed genes (DEGs), an HAscore model was constructed to quantify the histone acetylation patterns and related subtypes of individual samples. Lastly, the relationship between HAscore and transcription background, tumor clinical features, characteristics of TME, drug response, and efficacy of immunotherapy were analyzed.

Results

We identified three histone acetylation patterns characterized by high, medium, and low HAscore. Patients with HCC in the high HAscore group experienced worse overall survival time, and the cancer-related malignant pathways were more active in the high HAscore group, comparing to the low HAscore group. The high HAscore group was characterized by an immunosuppressive subtype because of the high infiltration of immunosuppressive cells, such as regulatory T cells and myeloid-derived suppressor cells. Following validation, the HAscore was highly correlated with the sensitivity of anti-tumor drugs; 116 therapeutic agents were found to be associated with it. The HAscore was also correlated with the therapeutic efficacy of the PD-L1 and PD-1 blockade, and the response ratio was significantly higher in the low HAscore group.

Conclusion

To the best of our knowledge, our study is the first to provide a comprehensive analysis of 36 histone acetylation regulators in HCC. We found close correlations between histone acetylation patterns and tumor malignant pathways and TME. We also analyzed the therapeutic value of the HAscore in targeted therapy and immunotherapy. This work highlights the interactions and potential clinical utility of histone acetylation regulators in treatment of HCC and improving patient outcomes.
Cancer and Autoimmune Diseases: A Tale of Two Immunological Opposites?
Authors: Elkoshi Zeev
Published: January 2022

The present article compares, side-by-side, cancer and autoimmune diseases in terms of innate and adaptive immune cells involvement, MHC Class I and Class II expression, TGFβ effect, immune modulating drugs effect and the effect of reactive oxygen species. The change in the inflammatory immune reaction during the progress of cancer and the effect of this change on the comorbidity of autoimmune diseases and cancer are discussed. The similar inflammatory properties of autoimmune diseases and early cancer, and the contrasting inflammatory properties of autoimmune diseases and advanced cancer elucidate the increased incidence of many types of cancer in patients with pre-existing autoimmune diseases and the decreased cancer-specific mortality of these patients. Stage-dependent effects of reactive oxygen-species on tumor proliferation are an additional probable cause for these epidemiological observations. The relationship: {standardized incidence ratio (SIR)} > {cancer-specific hazard ratio (HR)} for cancer patients with a history of autoimmune diseases is substantiated and rationalized.
Achievements, Gaps, and Emerging Challenges in Controlling Malaria in Ethiopia
Authors: Yalew Amsalu Woldie
Published: January 2022

Controlling malaria is one of the top health sector priorities in Ethiopia. The concrete prevention, control, and treatment interventions undertaken in the past two decades have substantially reduced the morbidity and mortality attributable to malaria. Emboldened by these past achievements, Ethiopia envisages to eliminate malaria by 2030. Realizing this ambition, however, needs to further strengthen the financial, technical, and institutional capacities to address the current as well as emerging challenges. It particularly needs to step up measures pertaining to diagnosis, domestic resource mobilization, vector surveillance, and seasonal weather forecasting.
Nearshore to Offshore Trends in Plankton Assemblage and Stable Isotopes in Reefs of the West Philippine Sea
Authors: Yñiguez Aletta T. , Apego Gianina Cassandra May , Mendoza Norman , Gomez Norchel Corcia , Jacinto Gil S.
Published: January 2022

Coral reefs are typified by their benthic components, and reef diversity and productivity are traditionally ascribed to the symbiotic association between corals and zooxanthellae, and other macroalgal forms. Less understood is the role of plankton and adjacent pelagic areas in contributing to reef productivity. Half of the reef benthos are filter or particle feeders, while a significant proportion of reef fishes are planktivorous. These organisms can serve as bridges between adjacent oceanic areas to the reef proper, and the pelagic and benthic realm. Here, we investigate the plankton trophic dynamics in two reef systems in the West Philippine Sea. Physico-chemical data, phytoplankton and mesozooplankton samples were collected from stations spanning offshore to reef areas per site. These were subjected to microscopic and stable isotope analysis to determine variability in plankton distribution, phytoplankton and zooplankton interactions, and gain insights into the trophic dynamics and productivity of reefs. Results showed distinct variations in plankton biomass and assemblage from offshore to reef areas, as well as between the reef systems. Phytoplankton distributions pointed toward filtering out of cells across the fore reef and reef flat areas, while mesozooplankton distributions could be mediated more by other factors. Isotopic signatures of δ13C and δ15N indicated the influence of different nutrient sources for phytoplankton and that mesozooplankton relied only partly on phytoplankton for food in most areas of the reefs. The mesozooplankton likely also obtain food from other sources such as the microbial and detrital pathways. More in-depth spatio-temporal studies on these bentho-pelagic interactions are recommended, which can provide more robust estimates of the trophic dynamics of these reefs that are situated in important fishing grounds and key biodiversity areas.
Water Temperature at Different Depths Affects the Distribution of Neon Flying Squid (Ommastrephes bartramii) in the Northwest Pacific Ocean
Authors: Wang Jintao , Cheng Yiqi , Lu Huajie , Chen Xinjun , Lin Lei , Zhang Junbo
Published: January 2022

Ommastrephes bartramii can vertically swim during its life, and previous studies have suggested the need to account for preferred habitat distribution influenced by water temperatures at different depths. To explore the impacts of deep-water temperature on O. bartramii spatial distribution, we constructed generalized additive models (GAMs) based on the Chinese squid-jigging fishery data and the Argo deep water temperature data during 2005–2018 in the Northwest Pacific Ocean to analyze the relationships between the local abundance of O. bartramii and deep-water temperatures. The results showed that the variables including surface water temperature (T0), water temperature at 30- and 100-m depths (T30 and T100), and water differences between T0 and T30 (D0–30) significantly affected the spatial distribution of O. bartramii. The suitable ranges of each variable are different, > 15.5°C for T0, 11–18°C for T30, < 6°C for T100, and 4–4.5°C for D0–30. The areas occupied by the suitable T30 seemed to reflect the outline of fishing ground, whereas the areas with suitable T100 were to indicate the high density of O. bartramii. The predicted suitable habitat area and high-density area for O. bartramii are also regulated by El Niño–Southern Oscillation (ENSO) events. We demonstrated how the estimates of O. bartramii spatial distribution would vary influenced by deep-water temperatures in the Northwest Pacific Ocean. This information may help develop an appropriate method for investigating the effects of deep-water temperature on species with vertical migration.
Use of Our Future Seas: Relevance of Spatial and Temporal Scale for Physical and Biological Indicators
Authors: Trifonova Neda , Scott Beth , De Dominicis Michela , Wolf Judith
Published: January 2022

There is about to be an abrupt step-change in the use of our coastal seas, specifically by the addition of large-scale offshore renewable energy developments to combat climate change. Many trade-offs will need to be weighed up for the future sustainable management of marine ecosystems between renewables and other uses (e.g., fisheries, marine protected areas). Therefore, we need a much greater understanding of how different marine habitats and ecosystems are likely to change with both natural and anthropogenic transformations. This work will present a review of predictive Bayesian approaches from ecosystem level, through to fine scale mechanistic understanding of foraging success by individual species, to identify consistent physical (e.g., bottom temperature) and biological (e.g., chlorophyll-a) indicators of habitat and ecosystem change over the last 30 years within the North Sea. These combined approaches illuminate the feasibility of integrating knowledge across scales to be able to address the spatio-temporal variability of biophysical indicators to ultimately strengthen predictions of population changes at ecosystem scales across broadly different habitat types. Such knowledge will provide an effective baseline for more strategic and integrated approaches to both monitoring studies and assessing anthropogenic impacts to be used within marine spatial planning considerations.
Impact of Decadal Trends in the Surface Climate of the North Atlantic Subpolar Gyre on the Marine Environment of the Barents Sea
Authors: Koul Vimal , Brune Sebastian , Baehr Johanna , Schrum Corinna
Published: January 2022

The Barents Sea is a key region in the Earth System and is home to highly productive marine resources. An integrated approach for strategic sustainable management of marine resources in such shelf-sea marine ecosystems requires, among many other aspects, a robust understanding of the impact of climate on local oceanic conditions. Here, using a combined observational and modelling approach, we show that decadal climatic trends associated with the North Atlantic Subpolar Gyre (SPG), within the period 1960–2019, have an impact on oceanic conditions in the Barents Sea. We relate hydrographic conditions in the Barents Sea to the decadal variability of the SPG through its impact on the Atlantic Inflow via the Faroe-Shetland Channel and the Barents Sea Opening. When the SPG warms, an increase in the throughput of subtropical waters across the Greenland-Scotland Ridge is followed by an increase in the volume of Atlantic Water entering the Barents Sea. These changes are reflected in pronounced decadal trends in the sea-ice concentration and primary production in the Barents Sea, which follow the SPG after an advective delay of 4–5 years. This impact of the SPG on sea-ice and primary production provides a dynamical explanation of the recently reported 7-year lagged statistical relationship between SPG and cod (Gadus morhua) biomass in the Barents Sea. Overall, these results highlight a potential for decadal ecosystem predictions in the Barents Sea.
Alongshore Propagation of Subtidal Sea Level Fluctuations Around the Korean Peninsula Over Varying Stratification and Shelf Topography
Authors: Lee KyungJae , Nam SungHyun , Park Jae-Hyoung
Published: January 2022

Understanding subtidal (a period band of 3–20 days) coastal sea level fluctuations is of increasing importance for the sustainable use of coastal areas under challenging conditions resulting from regional and global sea-level rise. The wind-forced coastal-trapped waves (CTW) theory often accounts for subtidal sea level fluctuations observed off global coasts with a considerable range of propagation speeds. Here, the propagation speeds of subtidal sea level fluctuations observed at seven coastal tide-gauge stations around the Korean Peninsula (KP) from 1997 to 2017 were compared with phase speeds modeled for 10 segments of realistic bottom topography around the KP and four seasons of density stratification using a wind-forced CTW model. Alongshore variations in the modeled phase speed (2.0–10.0 m s–1, increasing with the bottom depth, shelf width, and vertical density difference) were consistent with those of the observed propagation speed (4.7–18.9 m s–1), despite systematic underestimation by 50%, i.e., the mean speed of 6.0 vs. 11.8 m s–1. This underestimation is discussed considering subtidal sea level fluctuations of non-CTW origin that were not incorporated into the CTW model, such as (1) Barometric sea level response to atmospheric pressure disturbances, and (2) Upwelling/downwelling response to local alongshore wind stress. This study suggests that subtidal coastal sea level fluctuates around the KP within and beyond CTW dynamics.
Long Non-coding RNA MALAT1: A Key Player in Liver Diseases
Authors: Lu Juan , Guo Jing , Liu Jun , Mao Xiaomin , Xu Kaijin
Published: January 2022

Long non-coding RNAs (lncRNAs) exceed 200 nucleotides in length are considered to be involved in both developmental processes and various diseases. Here, we focus on lncRNA MALAT1 (metastasis-associated lung adenocarcinoma transcript 1), which was one of the most important lncRNAs in proliferation, apoptosis, and migration. MALAT1 plays a regulatory role in liver diseases, including hepatic fibrosis, liver regeneration, liver cancer, and fatty liver diseases. In the current review, we summarize the latest literature about the function roles of MALAT1 in liver disorders. Probing the regulatory mechanism and cross talk of MALAT1 with other signaling pathways of pathological processes would improve the prognosis, diagnosis of liver diseases, and offer a promising candidate target for therapeutic interventions.
Next Generation Sequencing for Diagnosis of Leptospirosis Combined With Multiple Organ Failure: A Case Report and Literature Review
Authors: Lu Juan , Hu Juan , Yu Shanshan , Li Lanjuan
Published: January 2022

Introduction

Leptospirosis poses a major threat to human life. The disease spectrum ranges from a nearly undetectable presentation to severe multi-organ dysfunction and death. Leptospirosis is difficult to diagnose by traditional antibody and culture tests. We here present a case of multiple organ failure associated with leptospirosis.

Material and Methods

A 64-year-old woman presented with fatigue and arthralgia, which developed rapidly into multiple organ injuries, and she eventually died of cerebral hemorrhage. Serum antibody test and cultures of blood, sputum, urine, and feces samples were all negative. The patient was diagnosed with leptospirosis by the next-generation sequencing (NGS).

Conclusion

We conclude that leptospirosis is a neglected zoonosis caused by pathogenic Leptospira species. New techniques such as NGS are highlighted for early diagnosis. Surveillance for pathogens during diagnosis can provide guidance for clinical treatment and improves prognosis.
Treat-and-Extend vs. Pro Re Nata Regimen of Ranibizumab for Diabetic Macular Edema—A Two-Year Matched Comparative Study
Authors: Lai Tso-Ting , Chen Ta-Ching , Yang Chang-Hao , Yang Chung-May , Ho Tzyy-Chang , Hsieh Yi-Ting
Published: January 2022

Purpose

To compare 2-year treatment outcomes of ranibizumab using treat-and-extend (T&E) or pro re nata (PRN) regimens for diabetic macular edema (DME) in clinical settings.

Methods

We retrospectively enrolled 34 patients (34 eyes) with DME treated with ranibizumab using the T&E regimen, and 34 patients (34 eyes) treated with ranibizumab using the PRN regimen and matched to cases in the treat-and-extend group by baseline best-corrected visual acuity (BCVA) and central foveal thickness (CFT). BCVA and CFT changes, number of injections and recurrence of macular edema over 2 years were compared between the groups.

Results

The average BCVA gain in the T&E and PRN groups was 16.2 and 7.6 ETDRS letters at 2 years (p = 0.011), respectively. The mean CFT reduction was 145.5 ± 127.3 and 97.3 ± 152.5 μm in the T&E and PRN groups at 2 years (p = 0.035), respectively. The T&E group had a higher proportion of patients with BCVA gain ≥ 15 letters at months 18 (p = 0.015) and 24 (p = 0.029) than the PRN group. During the 2-year treatment periods, the T&E group received more injections than the PRN group (11.0 ± 3.2 vs. 6.2 ± 2.0; p < 0.001), while the PRN group had more recurrence of macular edema than the T&E group (71 vs. 41%; p = 0.015).

Conclusions

After 2-year ranibizumab treatment for DME, better visual and anatomical improvement and less recurrence of macular edema were achieved in the T&E group, with more injections administered.
Measurement for the Area of Red Blood Cells From Microscopic Images Based on Image Processing Technology and Its Applications in Aplastic Anemia, Megaloblastic Anemia, and Myelodysplastic Syndrome
Authors: Zhao Yongfeng , Huang Tingting , Wang Xian , Chen Qianjun , Shen Hui , Xiong Bei
Published: January 2022

Background

Aplastic anemia (AA), megaloblastic anemia (MA), and myelodysplastic syndrome (MDS) were common anemic diseases. Sometimes it was difficult to distinguish patients with these diseases.

Methods

In this article, we proposed one measurement method for the area of red blood cells (RBCs) from microscopic images based on image processing technology and analyzed the differences of the area in 25 patients with AA, 64 patients with MA, and 68 patients with MDS.

Results

The area of RBCs was 44.19 ± 3.88, 42.09 ± 5.35, 52.87 ± 7.68, and 45.75 ± 8.07 μm2 in normal subjects, patients with AA, MA, and MDS, respectively. The coefficients of variation were 8.78%, 10.05%, 14.53%, and 14.00%, respectively, in these groups. The area of RBCs in patients with MA was significantly higher than normal subjects (p < 0.001). Compared with patients with AA and MDS, the area of RBCs in patients with MA was also significantly higher (p < 0.001). The results of correlation analysis between the area of RBCs and mean corpuscular volume (MCV), mean corpuscular hemoglobin (MCH), MCH concentration (MCHC), and red cell distribution width showed no significant correlations (p > 0.05). The area under the curve (AUC) results of the Receiver Operating Characteristic (ROC) curves of RBCs area were 0.421, 0.580, and 0.850, respectively, in patients with AA (p = 0.337), MDS (p = 0.237), and MA (p < 0.001).

Conclusion

Identifying the area of RBCs in peripheral blood smears based on the image processing technology could achieve rapid and efficient diagnostic support for patients with MDS and MA, especially for patients with MA and in combination with MCV. However, a larger sample study is needed to find the cutoff area values.
Inhibition of Matrix Metalloproteinase-8 Protects Against Sepsis Serum Mediated Leukocyte Adhesion
Authors: Fang Xiao , Duan Shu-Fang , Hu Zhi-Yuan , Wang Jun-Jie , Qiu Le , Wang Fei , Chen Xu-Lin
Published: January 2022

Purpose

Leukocyte adhesion to vascular and matrix Metalloproteinase-8 (MMP8) expression is increased in sepsis and associated with poor prognosis in sepsis patients. This study aimed to investigate the role of MMP8 in sepsis serum mediated leukocyte adhesion.

Methods

Bioinformatics analysis of GSE64457 and GSE65682 was performed to evaluate the role of MMP8 in the progression of sepsis. Expression of MMP8 in blood samples from patients with sepsis was detected by qRT-PCR and ELISA. Human umbilical vein endothelial cells (HUVECs) were treated with sepsis serum, control serum, and MMP8 inhibitor. Expression of vascular cell adhesion molecule-1 (VCAM-1) and intercellular cell adhesion molecule-1 (ICAM-1) were detected by qRT-PCR and ELISA, respectively. The protein expression of total p38, phosphorylated-p38, ERK1/2, and p-ERK1/2 was detected by Western blotting. Peripheral blood mononuclear cells (PBMCs) and polymorphonuclear neutrophils (PMNs) were incubated with the treated HUVECs to calculate leukocyte adhesion.

Results

Four hundred and twenty-nine differentially expressed genes (DEGs) and seven hub genes between sepsis patients and healthy controls were identified. GO function analysis of DEGs and hub genes indicated that the DEGs and hub genes were mainly enriched in neutrophil activation. MMP8 was selected as a key gene with an unfavorable prognosis in sepsis patients. The mRNA and protein expression of MMP8 in blood from sepsis patients were significantly higher than controls. Leukocyte adhesion and mRNA and protein expression of VCAM-1 and ICAM-1 were significantly increased in the sepsis serum group compared to that in the control group, as was the protein expression of p-p38 and p-ERK1/2. However, the MMP8 inhibitor suppressed the leukocyte adhesion promoted by sepsis serum by decreasing the expression of VCAM-1, ICAM-1, p-p38, and p-ERK1/2.

Conclusion

Our study indicated that MMP8 acts as a key gene in the development of sepsis, and sepsis serum promotes leukocyte adhesion to HUVECs via MMP8, which suggest that MMP8 might be a potential therapeutic target for sepsis.
RW-BP100-4D, a Promising Antimicrobial Candidate With Broad-Spectrum Bactericidal Activity
Authors: Tong Xingqi , Li Jun , Wei Ruicheng , Gong Lan , Ji Xing , He Tao , Wang Ran
Published: January 2022

With the rapid emergence and dissemination of antimicrobial resistance (AMR) genes in bacteria from animal, animal-derived food and human clinic, it is of great significance to develop new approaches to combat the multidrug-resistant bacteria. This study presented a short linear antimicrobial peptide RW-BP100-4D, which was derived from RW-BP100 (RRLFRRILRWL-NH2) by transforming the N-terminal 4th amino acid from L- to D-enantiomer. This modification remarkably reduced the peptide cytotoxicity to mammalian cells, as indicated by hemolytic and cytotoxicity assays. Meanwhile, the antimicrobial activity of RW-BP100-4D was improved against a more variety of Gram-positive and Gram-negative bacteria (sensitive and resistant) as well as fungi. Also, RW-BP100-4D showed strong in vitro anti-biofilm activity in a concentration-dependent manner, including inhibition of the biofilm-formation and dispersion of the mature biofilms of Staphylococcus aureus. RW-BP100-4D could be efficiently uptaken by bovine mammary epithelial cells (MAC-T) cells to eliminate the intracellular S. aureus ATCC29213 and Salmonella enterica ATCC13076. Moreover, RW-BP100-4D was highly effective in food disinfection of multiple bacterial contamination (including S. aureus, Listeria monocytogenesis, Escherichia coli O157: H7, Campylobacter jejuni, S. enterica, and Shewanella putrefaction, 3.61 ± 0.063 log reduction) on chicken meat, and could kill 99.99% of the methicillin-resistant Staphylococcus aureus (MRSA) strain in the mouse skin infection model. In summary, RW-BP100-4D is a promising antimicrobial candidate for application on food disinfection and local infection treatment. However, the protease-sensitivity of RW-BP100-4D and toxic effect at higher doses reduced the therapeutic effect of the candidate peptide in vivo and should be improved in the future studies.
Genome-Wide Identification of Genes Important for Growth of Dickeya dadantii and Dickeya dianthicola in Potato (Solanum tuberosum) Tubers
Authors: Helmann Tyler C. , Filiatrault Melanie J. , Stodghill Paul V.
Published: January 2022

Dickeya species are causal agents of soft rot diseases in many economically important crops, including soft rot disease of potato (Solanum tuberosum). Using random barcode transposon-site sequencing (RB-TnSeq), we generated genome-wide mutant fitness profiles of Dickeya dadantii 3937, Dickeya dianthicola ME23, and Dickeya dianthicola 67-19 isolates collected after passage through several in vitro and in vivo conditions. Though all three strains are pathogenic on potato, D. dadantii 3937 is a well-characterized model while D. dianthicola strains ME23 and 67-19 are recent isolates. Strain ME23 specifically was identified as a representative strain from a 2014 outbreak on potato. This study generated comparable gene fitness measurements across ecologically relevant conditions for both model and non-model strains. Tubers from the potato cultivars “Atlantic,” “Dark Red Norland,” and “Upstate Abundance” provided highly similar conditions for bacterial growth. Using the homolog detection software PyParanoid, we matched fitness values for orthologous genes in the three bacterial strains. Direct comparison of fitness among the strains highlighted shared and variable traits important for growth. Bacterial growth in minimal medium required many metabolic traits that were also essential for competitive growth in planta, such as amino acid, carbohydrate, and nucleotide biosynthesis. Growth in tubers specifically required the pectin degradation gene kduD. Disruption in three putative DNA-binding proteins had strain-specific effects on competitive fitness in tubers. Though the Soft Rot Pectobacteriaceae can cause disease with little host specificity, it remains to be seen the extent to which strain-level variation impacts virulence.
Effects of β-Carotin and Green Tea Powder Diets on Alleviating the Symptoms of Gouty Arthritis and Improving Gut Microbiota in C57BL/6 Mice
Authors: Feng Yu , Yu Yanbo , Chen Zheng , Wang Lili , Ma Jingyu , Bai Xiaohui , Sun Yundong , Wang Dawei
Published: January 2022

As a chronic metabolic disease caused by disorders of purine metabolism, gout has shown increasing incidence rate worldwide. Considering that gout is not easily treated and cured, further studies are explored to prevent gout development through diet modification. Both β-carotin and green tea powder are rich in dietary fiber, which helps maintain the balance of gut microbiota in humans. The aim of this study was to investigate the effects of β-carotin and green tea powder diet on the prevention of gouty arthritis in relation to the bacterial structure of gut microbiota in mice. We successfully induced gouty arthritis in C57BL/6 mice by injecting monosodium urate (MSU) crystals and feeding high-fat diet (HFD), and further investigated the effects of additional β-carotin and green tea powder in the diets of mice on the prevention of gouty arthritis in mice. Our results showed that diet of β-carotin and green tea powder reduced the joint swelling and pain in mice with gout, reduced the levels of serum uric acid (UA) and three types of pro-inflammatory cytokines, i.e., interleukin-1β (IL-1β), interleukin-6 (IL-6), and tumor necrosis factor-α (TNF-α), improved the gut microbiota profile, and reduced the metabolic levels of purines and pyrimidines. In conclusion, our study provided evidence to support the application of β-carotin and green tea powder diet as a dietary adjustment method to prevent and treat gouty arthritis.
Optimization of Ribosome Footprinting Conditions for Ribo-Seq in Human and Drosophila melanogaster Tissue Culture Cells
Authors: Douka Katerina , Agapiou Michaela , Birds Isabel , Aspden Julie L.
Published: January 2022

Our understanding of mRNA translation and its regulation has been transformed by the development of ribosome profiling. This approach relies upon RNase footprinting of translating ribosomes in a precise manner to generate an accurate snapshot of ribosome positions with nucleotide resolution. Here we tested a variety of conditions, which contribute to the preciseness of ribosome footprinting and therefore the success of ribosome profiling. We found that NaCl concentration, RNaseI source, RNaseI amount, and temperature of footprinting all contributed to the quality of ribosome footprinting in human neuroblastoma SH-SY5Y cells. These ideal conditions for footprinting also improved footprint quality when used with Drosophila melanogaster S2 cells. Footprinting under the same conditions generated different footprints sizes and framing patterns in human and D. melanogaster cells. We also found that treatment of S2 cells with cycloheximide prior to footprinting impacted the distribution of footprints across ORFs, without affecting overall read length distribution and framing pattern, as previously found in other organisms. Together our results indicate that a variety of factors affect ribosome footprint quality and the nature of precise footprinting varies across species.