bluuebunny/crossref_metadata_2025 huggingface dataset:
Extrinsic mechanical forces mediate retrograde axon extension in a developing neuronal circuit
Authors: Breau M. A. , Bonnet I. , Stoufflet J. , Xie J. , De Castro S. , Schneider-Maunoury S.
Published: August 2017

To form functional neural circuits, neurons migrate to their final destination and extend axons towards their targets. Whether and how these two processes are coordinated in vivo remains elusive. We use the zebrafish olfactory placode as a system to address the underlying mechanisms. Quantitative live imaging uncovers a choreography of directed cell movements that shapes the placode neuronal cluster: convergence of cells towards the centre of the placodal domain and lateral cell movements away from the brain. Axon formation is concomitant with lateral movements and occurs through an unexpected, retrograde mode of extension, where cell bodies move away from axon tips attached to the brain surface. Convergence movements are active, whereas cell body lateral displacements are of mainly passive nature, likely triggered by compression forces from converging neighbouring cells. These findings unravel a previously unknown mechanism of neuronal circuit formation, whereby extrinsic mechanical forces drive the retrograde extension of axons.
Chemical and electrochemical conditions within stress corrosion and corrosion fatigue cracks
Authors: Bland Leslie G. , Locke Jenifer S.
Published: August 2017

In the area of environment assisted cracking, literature aimed at understanding the chemical and electrochemical conditions at/near the crack tip establishes that the crack tip is occluded and not well represented by bulk conditions. A review of the relevant literature, both modeling and experimental, is presented here and shows that crack tip conditions are determined by the balance between high metal ion concentrations resulting from crack tip anodic reactions and subsequent hydrolysis, mass transport (including ion migration, diffusion, and advection), and electrochemical polarization of the bold surface, which determines the extent of anodic and cathodic reactions occurring in the crack environment. Under both freely corroding conditions and anodic polarizations, the crack tip pH decreases with increasing polarization above the freely corroding condition, most often leading to a very acidic crack environment. Under sufficient cathodic polarization, the crack tip pH increases. Because of high-anion and -cation concentrations in the crack environment, an IR drop down the crack exists, leaving the crack tip relatively unpolarizable. Ion migration enhances the occluded nature of the crack tip by supplying anions from the bulk solution to maintain electroneutrality at the crack tip. Diffusion to counteract this concentration gradient is minimal and only plays a role in crack tip conditions at very small crack lengths. When cyclic loading conditions are encountered, the occluded nature of the crack tip can be counteracted by advection; although, the role decreases with decreasingfand increasing R, essentially as corrosion fatigue conditions approach those of stress corrosion cracking.
Selective addressing of solid-state spins at the nanoscale via magnetic resonance frequency encoding
Authors: Zhang H. , Arai K. , Belthangady C. , Jaskula J.-C. , Walsworth R. L.
Published: August 2017

The nitrogen vacancy centre in diamond is a leading platform for nanoscale sensing and imaging, as well as quantum information processing in the solid state. To date, individual control of two nitrogen vacancy electronic spins at the nanoscale has been demonstrated. However, a key challenge is to scale up such control to arrays of nitrogen vacancy spins. Here, we apply nanoscale magnetic resonance frequency encoding to realize site-selective addressing and coherent control of a four-site array of nitrogen vacancy spins. Sites in the array are separated by 100 nm, with each site containing multiple nitrogen vacancies separated by ~15 nm. Microcoils fabricated on the diamond chip provide electrically tuneable magnetic field gradients ~0.1 G/nm. Tailored application of gradient fields and resonant microwaves allow site-selective nitrogen vacancy spin manipulation and sensing applications, including Rabi oscillations, imaging, and nuclear magnetic resonance spectroscopy with nanoscale resolution. Microcoil-based magnetic resonance of solid-state spins provides a practical platform for quantum-assisted sensing, quantum information processing, and the study of nanoscale spin networks.
Resolving the central metabolism of Arabidopsis guard cells
Authors: Robaina-Estévez Semidán , Daloso Danilo M. , Zhang Youjun , Fernie Alisdair R. , Nikoloski Zoran
Published: August 2017

Photosynthesis and water use efficiency, key factors affecting plant growth, are directly controlled by microscopic and adjustable pores in the leaf—the stomata. The size of the pores is modulated by the guard cells, which rely on molecular mechanisms to sense and respond to environmental changes. It has been shown that the physiology of mesophyll and guard cells differs substantially. However, the implications of these differences to metabolism at a genome-scale level remain unclear. Here, we used constraint-based modeling to predict the differences in metabolic fluxes between the mesophyll and guard cells of Arabidopsis thaliana by exploring the space of fluxes that are most concordant to cell-type-specific transcript profiles. An independent 13C-labeling experiment using isolated mesophyll and guard cells was conducted and provided support for our predictions about the role of the Calvin-Benson cycle in sucrose synthesis in guard cells. The combination of in silico with in vivo analyses indicated that guard cells have higher anaplerotic CO2 fixation via phosphoenolpyruvate carboxylase, which was demonstrated to be an important source of malate. Beyond highlighting the metabolic differences between mesophyll and guard cells, our findings can be used in future integrated modeling of multi-cellular plant systems and their engineering towards improved growth.
Detecting human melanoma cell re-differentiation following BRAF or heat shock protein 90 inhibition using photoacoustic and magnetic resonance imaging
Authors: Shah Anant , Delgado-Goni Teresa , Casals Galobart Teresa , Wantuch Slawomir , Jamin Yann , Leach Martin O. , Robinson Simon P. , Bamber Jeffrey , Beloueche-Babari Mounia
Published: August 2017

Targeted therapies specific to the BRAF-MEK-ERK signaling pathway have shown great promise in the treatment of malignant melanoma in the last few years, with these drugs now commonly used in clinic. Melanoma cells treated using these agents are known to exhibit increased levels of melanin pigment and tyrosinase activity. In this study we assessed the potential of non-invasive imaging approaches (photoacoustic imaging (PAI) and magnetic resonance imaging (MRI)) to detect melanin induction in SKMEL28 human melanoma cells, following inhibition of Hsp90 and BRAF signaling using 17-AAG and vemurafenib, respectively. We confirmed, using western blot and spectrophotometry, that Hsp90 or BRAF inhibitor-induced melanoma cell differentiation resulted in an upregulation of tyrosinase and melanin expression levels, in comparison to control cells. This post-treatment increase in cellular pigmentation induced a significant increase in PAI signals that are spectrally identifiable and shortening of the MRI relaxation times T1 and $${{\boldsymbol{T}}}_{{\bf{2}}}^{{\boldsymbol{\ast }}}$$

T

2

∗

. This proof-of-concept study demonstrates the potential of MRI and PAI for detecting the downstream cellular changes induced by Hsp90 and BRAF-MEK-targeted therapies in melanoma cells with potential significance for in vivo imaging.
Efficacy and safety of core-needle biopsy in initially detected thyroid nodules via propensity score analysis
Authors: Suh Chong Hyun , Baek Jung Hwan , Choi Young Jun , Kim Tae Yong , Sung Tae Yon , Song Dong Eun , Lee Jeong Hyun
Published: August 2017

We compared the efficacy and complications of core-needle biopsy (CNB) with those of fine-needle aspiration (FNA) in a large population of patients with initially detected thyroid nodules via a propensity score analysis. Outpatients with initially detected thyroid nodules, who had undergone CNB or FNA between January 2013 and December 2013, were selected. This study included 4,822 thyroid nodules from 4,553 consecutive patients. Adjustments for significant differences in patients’ baseline characteristics were facilitated via propensity score analysis. Subgroup analyses were performed according to nodule sizes ≥ 1 cm. The non-diagnostic result rate, malignancy rate, complication rate, and diagnostic accuracy were compared. A 1:1 matching of 1,615 patients yielded no significant differences between two groups for any covariate. The non-diagnostic result rate was significantly lower in the core-needle biopsy group than in the fine-needle aspiration group (5.2% vs. 12.1%), while the malignancy rate (23.7% vs. 11.8%) and sensitivity (75.9% vs. 55.6%) were significantly higher. However, the specificities were similar (100% and 99.9%, respectively). Propensity score and subgroup analyses showed similar results. The complication rate was similar between groups in matched cohorts. CNB is a promising and safe diagnostic tool for patients with initially detected thyroid nodules.
High-fat diet-induced acceleration of osteoarthritis is associated with a distinct and sustained plasma metabolite signature
Authors: Datta Poulami , Zhang Yue , Parousis Alexa , Sharma Anirudh , Rossomacha Evgeny , Endisha Helal , Wu Brian , Kacprzak Izabela , Mahomed Nizar N. , Gandhi Rajiv , Rockel Jason S. , Kapoor Mohit
Published: August 2017

Metabolic changes induced by high fat diet (HFD) that contribute to osteoarthritis (OA) are poorly understood. We investigated longitudinal changes to metabolites and their contribution to OA pathogenesis in response to HFD. HFD-fed mice exhibited acceleration of spontaneous age-related and surgically-induced OA compared to lean diet (LD)-fed mice. Using metabolomics, we identified that HFD-fed mice exhibited a distinct and sustained plasma metabolite signature rich in phosphatidylcholines (PC) and lysophosphatidylcholines (lysoPCs), even after resumption of normal chow diet. Using receiver operator curve analysis and prediction modelling, we showed that the concentration of these identified metabolites could efficiently predict the type of diet and OA risk with an accuracy of 93%. Further, longitudinal evaluation of knee joints of HFD- compared to LD- fed mice showed a greater percentage of leptin-positive chondrocytes. Mechanistic data showed that leptin-treated human OA chondrocytes exhibited enhanced production of lysoPCs and expression of autotaxin and catabolic MMP-13. Leptin-induced increased MMP13 expression was reversed by autotaxin inhibition. Together, this study is the first to describe a distinct and sustained HFD-induced metabolite signature. This study suggests that in addition to increased weight, identified metabolites and local leptin-signaling may also contribute in part, towards the accelerated OA-phenotype observed in HFD mice.
Complete alanine scanning of the Escherichia coli RbsB ribose binding protein reveals residues important for chemoreceptor signaling and periplasmic abundance
Authors: Reimer Artur , Maffenbeier Vitali , Dubey Manupriyam , Sentchilo Vladimir , Tavares Diogo , Gil Manuel Hernandez , Beggah Siham , van der Meer Jan Roelof
Published: August 2017

The Escherichia coli RbsB ribose binding protein has been used as a scaffold for predicting new ligand binding functions through in silico modeling, yet with limited success and reproducibility. In order to possibly improve the success of predictive modeling on RbsB, we study here the influence of individual residues on RbsB-mediated signaling in a near complete library of alanine-substituted RbsB mutants. Among a total of 232 tested mutants, we found 10 which no longer activated GFPmut2 reporter expression in E. coli from a ribose-RbsB hybrid receptor signaling chain, and 13 with significantly lower GFPmut2 induction than wild-type. Quantitative mass spectrometry abundance measurements of 25 mutants and wild-type RbsB in periplasmic space showed four categories of effects. Some (such as D89A) seem correctly produced and translocated but fail to be induced with ribose. Others (such as N190A) show lower induction probably as a result of less efficient production, folding and translocation. The third (such as N41A or K29A) have defects in both induction and abundance. The fourth category consists of semi-constitutive mutants with increased periplasmic abundance but maintenance of ribose induction. Our data show how RbsB modeling should include ligand-binding as well as folding, translocation and receptor binding.
From metabolome to phenotype: GC-MS metabolomics of developing mutant barley seeds reveals effects of growth, temperature and genotype
Authors: Khakimov Bekzod , Rasmussen Morten Arendt , Kannangara Rubini Maya , Jespersen Birthe Møller , Munck Lars , Engelsen Søren Balling
Published: August 2017

The development of crop varieties tolerant to growth temperature fluctuations and improved nutritional value is crucial due to climate change and global population growth. This study investigated the metabolite patterns of developing barley seed as a function of genotype and growth temperature for ideal vegetable protein production and for augmented β-glucan production. Seeds from three barley lines (Bomi, lys3.a and lys5.f) were sampled eight times during grain filling and analysed for metabolites using gas chromatography-mass spectrometry (GC-MS). The lys3.a mutation disrupts a regulator gene, causing an increase in proteins rich in the essential amino acid lysine, while lys5.f carries a mutation in an ADP-glucose transporter gene leading to a significant increase in production of mixed-linkage β-glucan at the expense of α-glucan. Unique metabolic patterns associated with the tricarboxylic acid cycle, shikimate-phenylpropanoid pathway, mevalonate, lipid and carbohydrate metabolism were observed for the barley mutants, whereas growth temperature primarily affected shikimate-phenylpropanoid and lipid metabolism. The study applied recently developed GC-MS metabolomics methods and demonstrated their successful application to link genetic and environmental factors with the seed phenotype of unique and agro-economically important barley models for optimal vegetable protein and dietary fibre production.
Lacrimal Gland Repair after Short-term Obstruction of Excretory Duct in Rabbits
Authors: Lin Hui , Liu Ying , He Hong , Botsford Benjamin , Yiu Samuel
Published: August 2017

Aqueous tear-deficient dry eye is a multifactorial chronic disorder in which the lacrimal glands fail to produce enough tears to maintain a healthy ocular surface. The existence of lacrimal gland stem/progenitor cells was proposed in several species, yet their origin and characteristics are not very clear. Here, we investigated the presence of resident progenitor cells and their regenerative potential in a rabbit model with lacrimal gland main excretory duct ligation-induced injury. The ligation-injured lacrimal glands temporarily decreased in weight and had impaired tear secretion. Protein expression profiles and transcriptional profiles were obtained from injured tissue. Isolated lacrimal gland progenitor cells were tested and characterized by stem cell-related marker evaluation, single cell clonal assay and three-dimensional (3-D) culture. The results of our study indicate that lacrimal glands are capable of tissue repair after duct ligation-induced injury, likely involving resident stem/progenitor cells and epithelial-mesenchymal transitions. Lacrimal gland progenitor cells isolated from ligated tissue can differentiate in 3-D culture. The results provide further insights into lacrimal gland stem/progenitor cell physiology and their potential for treating severe cases of tear deficiency.
IgE Trimers Drive SPE-7 Cytokinergic Activity
Authors: Bax Heather J. , Bowen Holly , Beavil Rebecca L. , Chung Raymond , Ward Malcolm , Davies Anna M. , Dodev Tihomir S. , McDonnell James M. , Beavil Andrew J. , Sutton Brian J. , Gould Hannah J.
Published: August 2017

Degranulation of mast cells and basophils, with release of agents of the allergic response, ensues when multivalent antigens bind to and cross-link the cells’ receptor-bound IgE antibodies. A widely used commercial monoclonal IgE antibody, SPE-7 IgE from Sigma, was found to possess the radically anomalous property, termed “cytokinergic”, of inducing basophil degranulation without the intervention of an antigen. We show here that the IgE monomer, freed of protein contaminants, is devoid of this activity, and that the source of the anomaly is a trace impurity, identified as a dissociation-resistant IgE trimer. Possible models for the formation of IgE trimers and the manner in which they cross-link cell surface receptors are suggested herein.
Pupil Size Tracks Attentional Performance In Attention-Deficit/Hyperactivity Disorder
Authors: Wainstein G. , Rojas-Líbano D. , Crossley N. A. , Carrasco X. , Aboitiz F. , Ossandón T.
Published: August 2017

Attention-deficit/hyperactivity disorder (ADHD) diagnosis is based on reported symptoms, which carries the potential risk of over- or under-diagnosis. A biological marker that helps to objectively define the disorder, providing information about its pathophysiology, is needed. A promising marker of cognitive states in humans is pupil size, which reflects the activity of an ‘arousal’ network, related to the norepinephrine system. We monitored pupil size from ADHD and control subjects, during a visuo-spatial working memory task. A sub group of ADHD children performed the task twice, with and without methylphenidate, a norepinephrine–dopamine reuptake inhibitor. Off-medication patients showed a decreased pupil diameter during the task. This difference was no longer present when patients were on-medication. Pupil size correlated with the subjects’ performance and reaction time variability, two vastly studied indicators of attention. Furthermore, this effect was modulated by medication. Through pupil size, we provide evidence of an involvement of the noradrenergic system during an attentional task. Our results suggest that pupil size could serve as a biomarker in ADHD.
Transcription factor ZNF148 is a negative regulator of human muscle differentiation
Authors: Bakke Jesse , Wright William C. , Zamora Anthony E. , Ong Su Sien , Wang Yue-Ming , Hoyer Jessica D. , Brewer Christopher T. , Thomas Paul G. , Chen Taosheng
Published: August 2017

Muscle differentiation is a complex process in which muscle progenitor cells undergo determination and eventually cellular fusion. This process is heavily regulated by such master transcription factors as MYOD and members of the MEF2 family. Here, we show that the transcription factor ZNF148 plays a direct role in human muscle cell differentiation. Downregulation of ZNF148 drives the formation of a muscle phenotype with rapid expression of myosin heavy chain, even in proliferative conditions. This phenotype was most likely mediated by the robust and swift upregulation of MYOD and MEF2C.
Multimerization is required for antigen binding activity of an engineered IgM/IgG chimeric antibody recognizing a skin-related antigen
Authors: Teye Kwesi , Hashimoto Koji , Numata Sanae , Ohta Kunihiro , Haftek Marek , Hashimoto Takashi
Published: August 2017

Monoclonal antibodies offer great tools for research. We encountered a potentially useful mouse IgM monoclonal antibody whose antigen is expressed in normal skin but lost in human skin cancer. Because IgM is difficult to work with and the antigen was unknown, we decided to convert the IgM (µ) to IgG (γ) version. After cDNA for the antibody was obtained by RACE PCR, we made a series of molecules with different combinations of IgM and IgG domains. Whereas VH-Cµ1-Cµ2-Cγ3 and VH-Cµ1-Cµ2-Hinge-Cγ2-Cγ3 functionally bound to the antigen, VH-Cγ1-Hinge-Cγ2-Cγ3, VH-Cµ1-Hinge-Cγ2-Cγ3, and VH-Cµ1-Cµ2-Cγ2-Cγ3 did not. Gel filtration analyses revealed that the functional molecules tend to form multimers and the multimeric forms retained antigen binding activity. Furthermore, the mutation of amino acid residue p.309Q > C of mouse IgG and addition of IgM tailpiece to the C-terminus of the molecules induced multimer formation, dramatically enhanced antibody functionality and all non-functional molecules became strongly functional. The functional molecules could be bound by protein A/protein G and other IgG specific reagents and therefore should be useful for further characterization of the antigen. Our study revealed that multimerization of converted IgM is functionally important for antigen binding activity of engineered IgM/IgG chimeric antibodies.
Complementarity among natural enemies enhances pest suppression
Authors: Dainese Matteo , Schneider Gudrun , Krauss Jochen , Steffan-Dewenter Ingolf
Published: August 2017

Natural enemies have been shown to be effective agents for controlling insect pests in crops. However, it remains unclear how different natural enemy guilds contribute to the regulation of pests and how this might be modulated by landscape context. In a field exclusion experiment in oilseed rape (OSR), we found that parasitoids and ground-dwelling predators acted in a complementary way to suppress pollen beetles, suggesting that pest control by multiple enemies attacking a pest during different periods of its occurrence in the field improves biological control efficacy. The density of pollen beetle significantly decreased with an increased proportion of non-crop habitats in the landscape. Parasitism had a strong effect on pollen beetle numbers in landscapes with a low or intermediate proportion of non-crop habitats, but not in complex landscapes. Our results underline the importance of different natural enemy guilds to pest regulation in crops, and demonstrate how biological control can be strengthened by complementarity among natural enemies. The optimization of natural pest control by adoption of specific management practices at local and landscape scales, such as establishing non-crop areas, low-impact tillage, and temporal crop rotation, could significantly reduce dependence on pesticides and foster yield stability through ecological intensification in agriculture.
Adjustment of the Arabidopsis circadian oscillator by sugar signalling dictates the regulation of starch metabolism
Authors: Seki Motohide , Ohara Takayuki , Hearn Timothy J. , Frank Alexander , da Silva Viviane C. H. , Caldana Camila , Webb Alex A. R. , Satake Akiko
Published: August 2017

Arabidopsis plants store part of the carbon fixed by photosynthesis as starch to sustain growth at night. Two competing hypotheses have been proposed to explain this diel starch turnover based on either the measurement of starch abundance with respect to circadian time, or the sensing of sugars to feedback to the circadian oscillator to dynamically adjust the timing of starch turnover. We report a phase oscillator model that permitted derivation of the ideal responses of the circadian regulation of starch breakdown to maintain sucrose homeostasis. Testing the model predictions using a sugar-unresponsive mutant of Arabidopsis demonstrated that the dynamics of starch turnover arise from the circadian clock measuring and responding to the rate of change of cellular sucrose. Our theory and experiments suggest that starch turnover is controlled by the circadian clock acting as a dynamic homeostat responding to sucrose signals to maintain carbon homeostasis.
Intraoperative Parathyroid Localization with Near-Infrared Fluorescence Imaging Using Indocyanine Green during Total Parathyroidectomy for Secondary Hyperparathyroidism
Authors: Cui Le , Gao Yang , Yu Heping , Li Min , Wang Birong , Zhou Tao , Hu Qinggang
Published: August 2017

The detection of all glands during total parathyroidectomy (TPTX) in secondary hyperparathyroidism (SHPT) patients is often difficult due to their variability in number and location. The objective of this study was to evaluate the feasibility of near-infrared fluorescence (NIRF) imaging using indocyanine green (ICG) for intraoperative parathyroid gland (PTG) localization in SHPT patients. Twenty-nine patients with SHPT were divided into two groups with or without intraoperative NIRF imaging. ICG was administered in patients undergoing intraoperative imaging, and the fluorescence of PTGs was assessed. Clinical and histopathologic variables were analyzed to determine factors associated with ICG uptake. Comparisons between NIRF and preoperative imaging, as well as differences between groups with or without NIRF imaging, were carried out to evaluate the efficacy of this technique. Most PTGs could be clearly identified, including one ectopic gland. The sensitivity of NIRF imaging is 91.1% in contrast to 81.82% for ultrasonography (US), 62.34% for 99mTc-MIBI and 85.71% for computed tomography (CT). In addition, intraoperative NIRF imaging can reduce the operation time and improve the complete resection rate compared with the group not using it. Intraoperative NIRF imaging using ICG during TPTX is technically feasible and reliable for assisting surgeons in detecting and confirming PTGs.
Structure-based cross-docking analysis of antibody–antigen interactions
Authors: Kilambi Krishna Praneeth , Gray Jeffrey J.
Published: August 2017

Antibody–antigen interactions are critical to our immune response, and understanding the structure-based biophysical determinants for their binding specificity and affinity is of fundamental importance. We present a computational structure-based cross-docking study to test the identification of native antibody–antigen interaction pairs among cognate and non-cognate complexes. We picked a dataset of 17 antibody–antigen complexes of which 11 have both bound and unbound structures available, and we generated a representative ensemble of cognate and non-cognate complexes. Using the Rosetta interface score as a classifier, the cognate pair was the top-ranked model in 80% (14/17) of the antigen targets using bound monomer structures in docking, 35% (6/17) when using unbound, and 12% (2/17) when using the homology-modeled backbones to generate the complexes. Increasing rigid-body diversity of the models using RosettaDock’s local dock routine lowers the discrimination accuracy with the cognate antibody–antigen pair ranking in bound and unbound models but recovers additional top-ranked cognate complexes when using homology models. The study is the first structure-based cross-docking attempt aimed at distinguishing antibody–antigen binders from non-binders and demonstrates the challenges to address for the methods to be widely applicable to supplement high-throughput experimental antibody sequencing workflows.
Myst2/Kat7 histone acetyltransferase interaction proteomics reveals tumour-suppressor Niam as a novel binding partner in embryonic stem cells
Authors: Pardo Mercedes , Yu Lu , Shen Shihpei , Tate Peri , Bode Daniel , Letney Blake L. , Quelle Dawn E. , Skarnes William , Choudhary Jyoti S.
Published: August 2017

MYST histone acetyltransferases have crucial functions in transcription, replication and DNA repair and are hence implicated in development and cancer. Here we characterise Myst2/Kat7/Hbo1 protein interactions in mouse embryonic stem cells by affinity purification coupled to mass spectrometry. This study confirms that in embryonic stem cells Myst2 is part of H3 and H4 histone acetylation complexes similar to those described in somatic cells. We identify a novel Myst2-associated protein, the tumour suppressor protein Niam (Nuclear Interactor of ARF and Mdm2). Human NIAM is involved in chromosome segregation, p53 regulation and cell proliferation in somatic cells, but its role in embryonic stem cells is unknown. We describe the first Niam embryonic stem cell interactome, which includes proteins with roles in DNA replication and repair, transcription, splicing and ribosome biogenesis. Many of Myst2 and Niam binding partners are required for correct embryonic development, implicating Myst2 and Niam in the cooperative regulation of this process and suggesting a novel role for Niam in embryonic biology. The data provides a useful resource for exploring Myst2 and Niam essential cellular functions and should contribute to deeper understanding of organism early development and survival as well as cancer. Data are available via ProteomeXchange with identifier PXD005987.
Association between fasting glucose and all-cause mortality according to sex and age: a prospective cohort study
Authors: Yi Sang-Wook , Park Sangkyu , Lee Yong-ho , Park Hyang-Jeong , Balkau Beverley , Yi Jee-Jeon
Published: August 2017

The association of fasting glucose with the risk of death according to sex and age remains unclear, and insufficient information is available on sex- and age-specific glucose concentrations within ethnic groups. This study analyzed a sample of 12,455,361 Korean adults who participated in health examinations during 2001–2004, and were followed up until 2013. Men had 3.0 mg/dL (0.167 mmol/L) higher mean glucose concentrations than women (94.7 vs. 91.7 mg/dL), although women over 73 years had higher levels. For glucose levels of 100–199 mg/dL, each 18 mg/dL (1 mmol/L) increase in fasting glucose increased mortality by 13% (HR = 1.13, [95% CI 1.12 to 1.13], p < 0.001). In individuals with fasting glucose levels of 100–125 mg/dL, each 18 mg/dL increase in fasting glucose was associated with a 30% increase in the risk for mortality (1.30, [1.18 to 1.43]) in those aged 18–34 years, a 32% increase (1.32, [1.26 to 1.39]) in those aged 35–44 years, and a 10% increase (1.10, [1.02 to 1.19]) in those aged 75–99 years. The fasting glucose levels associated with the lowest mortality were 80–94 mg/dL regardless of sex and age. Prediabetes (100–125 mg/dL) was associated with higher mortality. The associations of hyperglycemia with mortality were stronger at younger ages.
Nano metamaterials for ultrasensitive Terahertz biosensing
Authors: Lee Dong-Kyu , Kang Ji-Hun , Kwon Junghoon , Lee Jun-Seok , Lee Seok , Woo Deok Ha , Kim Jae Hun , Song Chang-Seon , Park Q-Han , Seo Minah
Published: August 2017

As a candidate for a rapid detection of biomaterials, terahertz (THz) spectroscopy system can be considered with some advantage in non-destructive, label-free, and non-contact manner. Because protein-ligand binding energy is in the THz range, especially, most important conformational information in molecular interactions can be captured by THz electromagnetic wave. Based on the THz time-domain spectroscopy system, THz nano-metamaterial sensing chips were prepared for great enhancing of detection sensitivity. A metamaterial sensing chip was designed for increasing of absorption cross section of the target sample, related to the transmitted THz near field enhancement via the composition of metamaterial. The measured THz optical properties were then analyzed in terms of refractive index and absorption coefficient, and compared with simulation results. Also, virus quantification regarding various concentrations of the viruses was performed, showing a clear linearity. The proposed sensitive and selective THz detection method can provide abundant information of detected biomaterials to help deep understanding of fundamental optical characteristics of them, suggesting rapid diagnosis way especially useful for such dangerous and time-sensitive target biomaterials.
Microclimatic temperatures increase the potential for vector-borne disease transmission in the Scandinavian climate
Authors: Haider Najmul , Kirkeby Carsten , Kristensen Birgit , Kjær Lene Jung , Sørensen Jens Havskov , Bødker Rene
Published: August 2017

We quantified the difference between the meteorological temperature recorded by the Danish Meteorological Institute (DMI) weather stations and the actual microclimatic temperatures at two or three different heights at six potential insect habitats. We then compared the impact of the hourly temperature on the extrinsic incubation period (EIP) of six pathogens. Finally, we developed a regression model, enabling us to predict the microclimatic temperatures of different habitats based on five standard meteorological parameters readily available from any meteorological institution. Microclimatic habitats were on average 3.5–5 °C warmer than the DMI recorded temperatures during midday and 1–3 °C cooler at midnight. The estimated EIP for five of the six microclimatic habitats was shorter than the estimates based on DMI temperatures for all pathogens studied. The microclimatic temperatures also predicted a longer season for virus development compared to DMI temperatures. Based on DMI data of hourly temperature, solar radiation, wind speed, rain and humidity, we were able to predict the microclimatic temperature of different habitats with an R2 of 0.87–0.96. Using only meteorological temperatures for vector-borne disease transmission models may substantially underestimate both the daily potential for virus development and the duration of the potential transmission season.
Impact of Ocean Warming on Tropical Cyclone Size and Its Destructiveness
Authors: Sun Yuan , Zhong Zhong , Li Tim , Yi Lan , Hu Yijia , Wan Hongchao , Chen Haishan , Liao Qianfeng , Ma Chen , Li Qihua
Published: August 2017

The response of tropical cyclone (TC) destructive potential to global warming is an open issue. A number of previous studies have ignored the effect of TC size change in the context of global warming, which resulted in a significant underestimation of the TC destructive potential. The lack of reliable and consistent historical data on TC size limits the confident estimation of the linkage between the observed trend in TC size and that in sea surface temperature (SST) under the background of global climate warming. A regional atmospheric model is used in the present study to investigate the response of TC size and TC destructive potential to increases in SST. The results show that a large-scale ocean warming can lead to not only TC intensification but also TC expansion. The TC size increase in response to the ocean warming is possibly attributed to the increase in atmospheric convective instability in the TC outer region below the middle troposphere, which facilitates the local development of grid-scale ascending motion, low-level convergence and the acceleration of tangential winds. The numerical results indicate that TCs will become stronger, larger, and unexpectedly more destructive under global warming.
The Link between ENSO-like Forcing and Hydroclimate Variability of Coastal East Asia during the Last Millennium
Authors: Park Jungjae , Han Jiwoo , Jin Qiuhong , Bahk Junbeom , Yi Sangheon
Published: August 2017

Inconsistent reconstructions of East Asian hydroclimate for the last millennium significantly limit our understanding of the mechanisms behind climate variability during the medieval climate anomaly (MCA) and little ice age (LIA) in the region. In this study, we present new high-resolution multiproxy records (diatom, δ13C, C/N, TS) from the Mulyoungari swamp, Jeju Island, South Korea. Our results indicate that El Niño southern oscillation-like variations caused the dry MCA/wet LIA pattern in the study area. Recent paleo-ENSO studies generally support the hypothesis that the MCA was characterized by more persistent El Niño-like conditions. During El Niño events, the genesis of typhoons affecting coastal East Asia tends to diminish because of warm anomalies of eastern tropical Pacific (ETP) SSTs and downward motions over the western tropical Pacific. Therefore, coastal East Asia likely experienced a decline in typhoon-related precipitation during the MCA, in contrast to monsoon-dominated northern China. Our results additionally imply that SST anomalies in the ETP need to be carefully checked to better understand current hydroclimate variability in coastal East Asia, one of the most populated areas on earth.
Identification of novel microRNAs in the sheep heart and their regulation in heart failure
Authors: Wong Lee Lee , Rademaker Miriam T. , Saw Eng Leng , Lew Kar Sheng , Ellmers Leigh J. , Charles Christopher J. , Richards Arthur Mark , Wang Peipei
Published: August 2017

Study of microRNA (miRNAs) using sheep models is limited due to lack of miRNA information. We therefore investigated oar-miRNAs and their regulation in an ovine model of heart failure (HF). Left ventricular (LV) tissue was collected from normal (Cont), HF (LV pacing @ ~220bpm for 13-days) and HF-recovery sheep (HF-R, 26-days after pacing cessation). MiRNA expression was profiled using next-generation sequencing (NGS) and miRNA array, and validated by stem-loop qPCR. Detected sequences were mapped against the ovine genome (Oar v4.0) and aligned with known miRNAs (miRBase v21). A total of 36,438,340 raw reads were obtained with a peak distribution of 18–23 nt. Of these, 637 miRNAs were detected by NGS and mapped to the ovine genome. With cut-off at 10 counts, 275 novel miRNAs were identified (with 186 showing 100% alignment and 89 showing 70–99% alignment with human/mouse and/or rat miRNAs, respectively), and 78 known oar-miRNAs. Cardiac-enriched miRNA-1, -133a, -208a/b and -499 were highly expressed in the LV. With HF induction, miRNA-133b-3p, -208b-3p, -125a-5p, -125b-5p, -126-3p, -21-5p, -210-3p, -29a-3p, -320a and -494-3p were significantly up-regulated relative to Cont and tended to return to normal levels following HF-recovery. This study has expanded the sheep miRNA database, and demonstrated HF-induced regulation of miRNAs.
Cross-modal plasticity in the deaf enhances processing of masked stimuli in the visual modality
Authors: Prasad Seema , Patil Gouri Shanker , Mishra Ramesh Kumar
Published: August 2017

Compensatory changes as a result of auditory deprivation in the deaf lead to higher visual processing skills. In two experiments, we explored if such brain plasticity in the deaf modulates processing of masked stimuli in the visual modality. Deaf and normal-hearing participants responded to targets either voluntarily or by instruction. Masked primes related to the response were presented briefly before the targets at the center and the periphery. In Experiment 1, targets appeared only at the foveal region whereas, in Experiment 2, they appeared both at the fovea and the periphery. The deaf showed higher sensitivity to masked primes in both the experiments. They chose the primed response more often and also were faster during congruent responses compared to the normal hearing. These results suggest that neuroplasticity in the deaf modulates how they perceive and use information with reduced visibility for action selection and execution.
The antibacterial and antifungal activity of six essential oils and their cyto/genotoxicity to human HEL 12469 cells
Authors: Puškárová Andrea , Bučková Mária , Kraková Lucia , Pangallo Domenico , Kozics Katarína
Published: August 2017

Six essential oils (from oregano, thyme, clove, lavender, clary sage, and arborvitae) exhibited different antibacterial and antifungal properties. Antimicrobial activity was shown against pathogenic (Escherichia coli, Salmonella typhimurium, Yersinia enterocolitica, Staphylococcus aureus, Listeria monocytogenes, and Enterococcus faecalis) and environmental bacteria (Bacillus cereus, Arthrobacter protophormiae, Pseudomonas fragi) and fungi (Chaetomium globosum, Penicillium chrysogenum, Cladosporium cladosporoides, Alternaria alternata, and Aspergillus fumigatus). Oregano, thyme, clove and arborvitae showed very strong antibacterial activity against all tested strains at both full strength and reduced concentrations. These essential oils showed different fungistatic and fungicidal activities when tested by direct application and in the vapor phase. The genotoxic effects of these oils on HEL 12469 human embryo lung cells were evaluated using an alkaline comet assay for the first time, revealing that none of the oils induced significant DNA damage in vitro after 24 h. This study provides novel approaches for assessing the antimicrobial potential of essential oils in both direct contact and the vapor phase and also demonstrates the valuable properties of the phenol-free arborvitae oil. These results suggest that all the tested essential oils might be used as broad-spectrum anti-microbial agents for decontaminating an indoor environment.
Improving a genetically encoded voltage indicator by modifying the cytoplasmic charge composition
Authors: Lee Sungmoo , Geiller Tristan , Jung Arong , Nakajima Ryuichi , Song Yoon-Kyu , Baker Bradley J.
Published: August 2017

An improved genetically encoded voltage indicator (GEVI) was achieved by altering the charge composition of the region linking the voltage-sensing domain of the GEVI to a pH-sensitive fluorescent protein. Negatively charged linker segments reduced the voltage-dependent optical signal while positively charged linkers increased the signal size. Arginine scanning mutagenesis of the linker region improved the signal size of the GEVI, Bongwoori, yielding fluorescent signals as high as 20% ΔF/F during the firing of action potentials. The speed of this new sensor was also capable of optically resolving action potentials firing at 65 Hz. This large signal size enabled individual pixels to become surrogate electrodes. Plotting the highest correlated pixels based only on fluorescence changes reproduced the image of the neuron exhibiting activity. Furthermore, the use of a pH-sensitive fluorescent protein facilitated the detection of the acidification of the neuron during the firing of action potentials.
Structural analysis of Wss1 protein from saccharomyces cerevisiae
Authors: Yang Xiaoyun , Li Yanhua , Gao Zengqiang , Li Zongqiang , Xu Jianhua , Wang Wenjia , Dong Yuhui
Published: August 2017

Wss1 is a DNA-protein crosslinks (DPCs) repair protein, which is responsible for degradation of the protein components in DPCs. In this investigation, crystal structure of the protease domain from saccharomyces cerevisiae Wss1 (ScWss1) was solved and was compared with the known crystal structure of Schizosaccharomyces prombe Wss1 (SpWss1). It is found that the cleft near zinc ion to be the most conserved core region of Wss1 and that the electronic surface distributions vary greatly between the two homologs. Solution architecture of the full-length ScWss1 was further investigated by small-angle X-ray scattering (SAXS), which indicated the protein contains a flexible region inside. Finally, based on the structural information, a mechanism was proposed about how the enzyme is activated by DNA substrates.
An Evaluation of the in vivo Safety of Nonporous Silica Nanoparticles: Ocular Topical Administration versus Oral Administration
Authors: Kim Martha , Park Joo-Hee , Jeong Hyejoong , Hong Jinkee , Choi Woo Sung , Lee Byung-Han , Park Choul Yong
Published: August 2017

Nonporous silica nanoparticles (SiNPs) have potential as promising carriers for ophthalmic drugs. However, the in vivo safety of ocular topical SiNPs remains unclear. This study investigated the in vivo safety of oral and ocular topical applications of 100 nm-sized SiNPs in Sprague-Dawley rats. The rats were divided into the following four groups: low-dose oral administration (total 100 mg/kg of SiNPs mixed with food for one week), high-dose oral administration (total 1000 mg/kg of SiNPs mixed with food for one week), ocular topical administration (10 mg/ml concentration, one drop, applied to the right eyes four times a day for one month), or a negative control (no SiNP treatment). The rats were observed for 12 weeks to investigate any signs of general or ocular toxicity. During the observation period, no differences were observed in the body weights, food and water intakes, behaviors and abnormal symptoms of the four groups. No animal deaths occurred. After 12 weeks, hematologic, blood biochemical parameters and ophthalmic examinations revealed no abnormal findings in any of the animals. The lack of toxicity of the SiNPs was further verified in autopsy findings of brain, liver, lung, spleen, heart, kidneys, intestine, eyeballs, and ovaries or testes.
Identification of potential impacts of climate change and anthropogenic activities on streamflow alterations in the Tarim River Basin, China
Authors: Xue Lianqing , Yang Fan , Yang Changbing , Chen Xinfang , Zhang Luochen , Chi Yixia , Yang Guang
Published: August 2017

Understanding contributions of climate change and human activities to changes in streamflow is important for sustainable management of water resources in an arid area. This study presents quantitative analysis of climatic and anthropogenic factors to streamflow alteration in the Tarim River Basin (TRB) using the double mass curve method (DMC) and the Budyko methods. The time series (1960~2015) are divided into three periods: the prior impacted period (1960~1972) and the two post impacted periods, 1973~1986 and 1987~2015 with trend analysis. Our results suggest that human activities played a dominant role in deduction in the streamflow in TRB with contribution of 144.6% to 120.68% during the post impacted period I and 228.68% to 140.38% during the post impacted period II. Climatic variables accounted for 20.68%~44.6% of the decrease during the post impacted period I and 40.38% ~128.68% during the post impacted period II. Sensitivity analysis indicates that the streamflow alteration was most sensitive to changes in landscape parameters. The aridity index and all the elasticities showed an obvious increasing trend from the upstream to the downstream in the TRB. Our study suggests that it is important to take effective measures for sustainable development of eco-hydrological and socio-economic systems in the TRB.
Treatment of metallurgical industry wastewater for organic contaminant removal in China: status, challenges, and perspectives
Authors: Wu Peng , Jiang Lan Ying , He Zhen , Song Yang
Published: August 2017

Technologies and processes dealing with organics in metal wastewaters are introduced, along with the latest standards, challenges and future trends.
Anti-tumor bioactivities of curcumin on mice loaded with gastric carcinoma
Authors: Wang Xiao-Ping , Wang Qiao-Xia , Lin Huan-Ping , Chang Na
Published: August 2017

Curcumin, a derivative from the dried rhizome of curcuma longa, has been proven to possess anti-tumor effects.
LiGa5O8:Cr-based theranostic nanoparticles for imaging-guided X-ray induced photodynamic therapy of deep-seated tumors
Authors: Chen Hongmin , Sun Xilin , Wang Geoffrey D. , Nagata Koichi , Hao Zhonglin , Wang Andrew , Li Zibo , Xie Jin , Shen Baozhong
Published: August 2017

LiGa5O8:Cr nanoparticles mediate near-infrared X-ray luminescence and X-ray induced photodynamic therapy, making them attractive theranostic agents for cancer therapy.
Balancing the electrical double layer capacitance and pseudocapacitance of hetero-atom doped carbon
Authors: Huang Zi-Hang , Liu Tian-Yu , Song Yu , Li Yat , Liu Xiao-Xia
Published: August 2017

Capacitive performance of polypyrrole-derived carbon nanowires is optimized by tuning the ratio of electrical double layer capacitance to pseudocapacitance.
Folded-up thin carbon nanosheets grown on Cu2O cubes for improving photocatalytic activity
Authors: Jiang Denghui , Zhang Yuegang , Li Xinheng
Published: August 2017

Folded-up carbon nanosheets grown on Cu2O can improve photocatalytic activity, in addition to improving photocatalytic stability.
A family of lanthanide compounds based on nitronyl nitroxide radicals: synthesis, structure, magnetic and fluorescence properties
Authors: Lv Xue-Hui , Yang Shuai-Liang , Li Yuan-Xia , Zhang Chen-Xi , Wang Qing-Lun
Published: August 2017

A series of lanthanide nitronyl nitroxide radical compounds have been synthesized and characterized structurally and magnetically.
An aptasensor with dsDNA for rapid and highly sensitive detection of kanamycin in milk
Authors: Li Falan , Wang Xiangyou , Sun Xia , Guo Yemin
Published: August 2017

Herein, we developed an aptasensor using double-stranded DNA (dsDNA) modified with cadmium sulfide (CdS) nanoparticles and gold nanoparticles (AuNPs) on a gold electrode (GE) for kanamycin detection.