bluuebunny/crossref_metadata_2025 huggingface dataset:
Introduction of macroalgae as a source of biodiesel in Iran: analysis of total lipid content, fatty acid and biodiesel indices
Authors: Jeliani Zahra Zarei , Fazelian Nasrin , Yousefzadi Morteza
Published: June 2021

The aim of this work was to describe and compare the main fatty acids and biodiesel indices of some green and brown macroalgae (seaweeds) collected from the Persian Gulf, as an alternative raw material for renewable biodiesel production. The macroalgae showed low lipid content (< 10% DW) but marine macroalgae with total lipid content > 5% DW are a good source for biodiesel production. The total lipid content and saturated fatty acids (SFAs) of green algae were higher than that of brown algae, while higher accumulation of unsaturated fatty acids (USFAs) was observed in brown seaweeds. Further, the main fatty acid in all studied seaweeds was palmitic acid (C16:0), which was followed by oleic acid (C18:1). The results of this work showed that three of the green algae, especially C. sertularioides, could be a potential source of fatty acids for biodiesel production owing to their high total lipid content, high cold flow indices (long chain saturated factor, cold filter plugging point and cloud point) and a fatty acid profile rich in SFAs with a high amount of C18:1, which is suitable for oil-based bio products. In contrast, the brown seaweeds Sargassum boveanum and Sirophysalis trinodis lipid content had a high proportion of polyunsaturated fatty acids (PUFAs), which makes them suitable for replacing fish oil.
Individual and environmental correlates of childhood maltreatment and exposure to community violence: Utilizing a latent profile and a multilevel meta-analytic approach
Authors: Estrada Suzanne , Gee Dylan G. , Bozic Ivana , Cinguina Michelle , Joormann Jutta , Baskin-Sommers Arielle
Published: June 2021

Background

Childhood maltreatment (CM) and exposure to community violence (ETV) are correlated with physical/mental health and psychosocial problems. Typically, CM and ETV are examined separately, by subtypes within category, or collapsed across both into one category of adversity. Consequently, research is limited in identifying subgroups of individuals with different amounts of exposure to both CM and ETV. Accordingly, we lack sufficient understanding of the extent to which problems associated with CM and ETV vary based on the amount (i.e. dose) of exposure to both of these experiences.

Methods

We used 20 samples (28,300 individuals) to estimate person-centered profiles of CM and ETV occurrence and co-occurrence within each sample. An individual data multilevel meta-analytic framework was used to determine the average effect size across samples for different profiles and conditional probability correlations within sociodemographic, neighborhood, health, mental health, and psychosocial domains.

Results

The profile characterized by high levels of CM and high levels of ETV correlated with stressful life events, depression and anxiety symptoms, and general indicators of externalizing behaviors. CM predominant profiles were associated with mental health diagnoses and treatment. ETV predominant profiles associated with risk-taking/violent behavior and neighborhood-level disadvantage. However, nuance based on the dose of CM or ETV was evident.

Conclusions

It is important to identify subgroups based on the amount of exposure to CM and ETV. These subgroups have differential relationships with correlates across domains. Greater delineation and description of the lived experience will allow for more precision in addressing the burden of childhood adversity.
In a bilingual state of mind: Investigating the continuous relationship between bilingual language experience and mentalizing
Authors: Tiv Mehrgol , O’Regan Elisabeth , Titone Debra
Published: June 2021

Mentalizing, a dynamic form of social cognition, is strengthened by language experience. Past research has found that bilingual children and adults outperform monolinguals on mentalizing tasks. However, bilingual experiences are multidimensional and diverse, and it is unclear how continuous individual differences in bilingual language experience relate to mentalizing. Here, we examine whether individual differences in bilingual language diversity, measured through language entropy, continuously pattern with mentalizing judgments among bilingual adults, and whether this relationship is constrained by first vs. second language reading. We tested sixty-one bilingual adults on a reading and inference task that compared mental state and logical inferences. We found that greater language diversity patterned with higher mentalizing judgments of mental state inferences across all readers, and that L2 readers attributed more mentalizing to logical inferences compared to L1 readers. Together, we found evidence of a positive relationship between continuous individual differences in bilingual language diversity and mentalizing.
Carbon monoxide exposure activates ULK1 via AMPK phosphorylation in murine embryonic fibroblasts
Authors: Stucki David , Westhoff Philipp , Brilhaus Dominik , Weber Andreas P. M. , Brenneisen Peter , Stahl Wilhelm
Published: June 2021

Abstract: Carbon monoxide (CO) is endogenously produced upon degradation of heme by heme oxygenases (HOs) and is suggested to act as a gaseous signaling molecule. The expression of HO-1 is triggered by the Nrf2-Keap1 signaling pathway which responds to exogenous stress signals and dietary constituents such as flavonoids and glucosinolates or reactive metabolic intermediates like 4-hydroxynonenal. Endogenous CO affects energy metabolism, regulates the utilization of glucose and addresses CYP450 enzymes. Using the CO releasing molecule-401 (CORM-401), we studied the effect of endogenous CO on ATP synthesis, AMP-signaling and activation of the AMPK pathway in cell culture. Upon exposure of cells to CORM-401, the mitochondrial ATP production rate was significantly decreased (P=0.007) to about 50%, while glycolytic ATP synthesis was unchanged (P=0.489). Total ATP levels were less affected as determined by mass spectrometry. Instead, levels of ADP and AMP were elevated following CORM-401 exposure by about two- (P=0.022) and four-fold (P=0.012) compared to control, respectively. Increased concentrations of AMP activate AMPK which was demonstrated by a 10 to 15-fold increased phosphorylation of Thr172 of the α-subunit of AMPK (P=0.025). A downstream target of AMPK is the kinase ULK1 which triggers autophagic and mitophagic processes. Activation of ULK1 after CO exposure was proven by a 3 to 5-fold elevated phosphorylation of ULK1 at Ser555 (P=0.004). The present data suggest that production of endogenous CO leads to increasing amounts of AMP which mediates AMPK-dependent downstream effects and likely triggers autophagic processes. Since dietary constituents and their metabolites induce the expression of the CO producing enzyme HO-1, CO signaling may also be involved in the cellular response to nutritional factors.
Investigating Thaw and Plant Productivity Constraints on Old Soil Carbon Respiration From Permafrost
Authors: Mauritz Marguerite , Pegoraro Elaine , Ogle Kiona , Ebert Christopher , Schuur Edward A. G.
Published: June 2021

Isotopic radiocarbon (Δ14C) signatures of ecosystem respiration (Reco) can identify old soil carbon (C) loss and serve as an early indicator of permafrost destabilization in a warming climate. Warming also stimulates plant productivity causing plant respiration to dominate Reco Δ14C signatures and potentially obscuring old soil C loss. Here, we investigate how a wide spatio‐temporal gradient of permafrost thaw and plant productivity affects Reco Δ14C patterns and isotopic partitioning. Spatial gradients came from a warming experiment with doubling thaw depth and variable biomass, and a vegetation removal manipulation to eliminate plant contributions. We sampled in August and September to capture transitions from high to low plant productivity, decreased surface soil temperature, and relatively small seasonal thaw extensions. We found that surface processes dominate spatial variation in old soil C loss and a process‐based partitioning approach was crucial for constraining old soil C loss. Resampling the same plots in different times of the year revealed that old soil C losses tripled with cooling surface temperature, and the largest old soil C losses were detected when the organic‐to‐mineral soil horizons thawed (∼50–60 cm). We suggest that the measured increase in old soil respiration over the season and when the organic‐to‐mineral horizon thawed, may be explained by mobilization of nitrogen that stimulates microbial decomposition at depth. Our results suggest that soil C in the organic to mineral horizon may be an important source of soil C loss as the entire Arctic region warms and could lead to nonlinearities in projected permafrost climate feedbacks.
Comparison of Current and Future PM2.5 Air Quality in China Under CMIP6 and DPEC Emission Scenarios
Authors: Cheng Jing , Tong Dan , Liu Yang , Yu Sha , Yan Liu , Zheng Bo , Geng Guannan , He Kebin , Zhang Qiang
Published: June 2021

The sixth Coupled Model Intercomparison Project (CMIP6) scenarios provide opportunities to explore global climate and pollution mitigation pathways with socioeconomic features, but they might be limited on regional‐scale projections due to inadequate consideration of local policies. Here, we simulated China's PM2.5 air quality with local policy‐based scenarios (Dynamic Projection for Emissions in China (DPEC)) and the CMIP6 scenarios. We found both emission inventories can reproduce China's base‐year PM2.5 and chemical aerosols while using DPEC emissions could better match in‐situ observations. In addition, DPEC mitigation scenarios can better capture China's PM2.5 decline during 2015–2019 (22% under SSP2‐45‐policy and 30% under SSP1‐26‐best) with observations (∼28%) than CMIP6 emissions. With the effects of current‐year bias and inadequate considerations of pollution control policies, PM2.5 projections in 2030 and 2050 with CMIP6 mitigation scenarios are 42%–48% (9–13 μg/m3) and 59%–73% (8–12 μg/m3) higher than projections with DEPC. Our study suggests the community should incorporate more region‐specific environmental policy in future scenario designs.
Spring Festival and COVID‐19 Lockdown: Disentangling PM Sources in Major Chinese Cities
Authors: Dai Qili , Hou Linlu , Liu Bowen , Zhang Yufen , Song Congbo , Shi Zongbo , Hopke Philip K. , Feng Yinchang
Published: June 2021

Responding to the 2020 COVID‐19 outbreak, China imposed an unprecedented lockdown producing reductions in air pollutant emissions. However, the lockdown driven air pollution changes have not been fully quantified. We applied machine learning to quantify the effects of meteorology on surface air quality data in 31 major Chinese cities. The meteorologically normalized NO2, O3, and PM2.5 concentrations changed by −29.5%, +31.2%, and −7.0%, respectively, after the lockdown began. However, part of this effect was also associated with emission changes due to the Chinese Spring Festival, which led to ∼14.1% decrease in NO2, ∼6.6% increase in O3 and a mixed effect on PM2.5 in the studied cities that largely resulted from festival associated fireworks. After decoupling the weather and Spring Festival effects, changes in air quality attributable to the lockdown were much smaller: −15.4%, +24.6%, and −9.7% for NO2, O3, and PM2.5, respectively.
The Potential for Low‐Grade Metamorphism to Facilitate Fault Instability in a Geothermal Reservoir
Authors: An Mengke , Zhang Fengshou , Min Ki‐Bok , Elsworth Derek , Marone Chris , He Changrong
Published: June 2021

Native and fluid circulation‐induced metamorphic products may affect the stability of faults in geothermal reservoirs–particularly epidote (Ep) and chlorite (Cl). Our laboratory experiments conducted at hydrothermal conditions show that these two minerals, when precipitated on natural faults, may promote fault instability or failure under conditions typifying a geothermal reservoir. Shear experiments on Ep‐rich fault gouges indicate potentially unstable frictional behavior—more pronounced at elevated temperatures and pore fluid pressures—and indicate increased potential for the nucleation of slip instability relative to that of the host granodiorite gouge. Experimental results indicate in particular that Ep can increase the potential for induced seismicity on existing faults. Increased proportions of Cl in gouges stabilize the faults but apparently lower the frictional strength. Our results reveal that the metamorphic minerals exert a subtle but potentially significant control on fault strength and stability in geothermal reservoirs.
Oleoylethanolamide induces eosinophilic airway inflammation in bronchial asthma
Authors: Kwon Eun-Kyung , Choi Youngwoo , Yoon Il-Hee , Won Ha-Kyeong , Sim Soyoon , Lee Hee-Ra , Kim Hyoung Su , Ye Young-Min , Shin Yoo Seob , Park Hae-Sim , Ban Ga-Young
Published: June 2021

Asthma is a chronic eosinophilic inflammatory disease with an increasing prevalence worldwide. Endocannabinoids are known to have immunomodulatory biological effects. However, the contribution of oleoylethanolamide (OEA) to airway inflammation remains to be elucidated. To investigate the effect of OEA, the expression of proinflammatory cytokines was measured by RT-qPCR and ELISA in airway epithelial (A549) cells. The numbers of airway inflammatory cells and cytokine levels in bronchoalveolar lavage fluid, airway hyperresponsiveness, and type 2 innate lymphoid cells (ILC2s) were examined in BALB/c mice after 4 days of OEA treatment. Furthermore, eosinophil activation after OEA treatment was evaluated by measuring cellular CD69 levels in eosinophils from human peripheral eosinophils using flow cytometry. OEA induced type 2 inflammatory responses in vitro and in vivo. OEA increased the levels of proinflammatory cytokines, such as IL-6, IL-8, and IL-33, in A549 cells. In addition, it also induced eosinophilic inflammation, the production of IL-4, IL-5, IL-13, and IL-33 in bronchoalveolar lavage fluid, and airway hyperresponsiveness. OEA increased the numbers of IL-5- or IL-13-producing ILC2s in a mouse model. Finally, we confirmed that OEA increased CD69 expression (an eosinophil activation marker) on purified eosinophils from patients with asthma compared to those from healthy controls. OEA may play a role in the pathogenesis of asthma by activating ILC2s and eosinophils.
COVID-19 and stem cell transplantation; results from an EBMT and GETH multicenter prospective survey
Authors: Ljungman Per , de la Camara Rafael , Mikulska Malgorzata , Tridello Gloria , Aguado Beatriz , Zahrani Mohsen Al , Apperley Jane , Berceanu Ana , Bofarull Rodrigo Martino , Calbacho Maria , Ciceri Fabio , Lopez-Corral Lucia , Crippa Claudia , Fox Maria Laura , Grassi Anna , Jimenez Maria-Jose , Demir Safiye Koçulu , Kwon Mi , Llamas Carlos Vallejo , Lorenzo José Luis López , Mielke Stephan , Orchard Kim , Porras Rocio Parody , Vallisa Daniele , Xhaard Alienor , Knelange Nina Simone , Cedillo Angel , Kröger Nicolaus , Piñana José Luis , Styczynski Jan
Published: June 2021

This study reports on 382 COVID-19 patients having undergone allogeneic (n = 236) or autologous (n = 146) hematopoietic cell transplantation (HCT) reported to the European Society for Blood and Marrow Transplantation (EBMT) or to the Spanish Group of Hematopoietic Stem Cell Transplantation (GETH). The median age was 54.1 years (1.0–80.3) for allogeneic, and 60.6 years (7.7–81.6) for autologous HCT patients. The median time from HCT to COVID-19 was 15.8 months (0.2–292.7) in allogeneic and 24.6 months (−0.9 to 350.3) in autologous recipients. 83.5% developed lower respiratory tract disease and 22.5% were admitted to an ICU. Overall survival at 6 weeks from diagnosis was 77.9% and 72.1% in allogeneic and autologous recipients, respectively. Children had a survival of 93.4%. In multivariate analysis, older age (p = 0.02), need for ICU (p < 0.0001) and moderate/high immunodeficiency index (p = 0.04) increased the risk while better performance status (p = 0.001) decreased the risk for mortality. Other factors such as underlying diagnosis, time from HCT, GVHD, or ongoing immunosuppression did not significantly impact overall survival. We conclude that HCT patients are at high risk of developing LRTD, require admission to ICU, and have increased mortality in COVID-19.
Disruption of STAT5A and NMI signaling axis leads to ISG20-driven metastatic mammary tumors
Authors: Alsheikh Heba Allah M. , Metge Brandon J. , Pruitt Hawley C. , Kammerud Sarah C. , Chen Dongquan , Wei Shi , Shevde Lalita A. , Samant Rajeev S.
Published: June 2021

Molecular dynamics of developmental processes are repurposed by cancer cells to support cancer initiation and progression. Disruption of the delicate balance between cellular differentiation and plasticity during mammary development leads to breast cancer initiation and metastatic progression. STAT5A is essential for differentiation of secretory mammary alveolar epithelium. Active STAT5A characterizes breast cancer patients for favorable prognosis. N-Myc and STAT Interactor protein (NMI) was initially discovered as a protein that interacts with various STATs; however, the relevance of these interactions to normal mammary development and cancer was not known. We observe that NMI protein is expressed in the mammary ductal epithelium at the onset of puberty and is induced in pregnancy. NMI protein is decreased in 70% of patient specimens with metastatic breast cancer compared to primary tumors. Here we present our finding that NMI and STAT5A cooperatively mediate normal mammary development. Loss of NMI in vivo caused a decrease in STAT5A activity in normal mammary epithelial as well as breast cancer cells. Analysis of STAT5A mammary specific controlled genetic program in the context of NMI knockout revealed ISG20 (interferon stimulated exonuclease gene 20, a protein involved in rRNA biogenesis) as an unfailing negatively regulated target. Role of ISG20 has never been described in metastatic process of mammary tumors. We observed that overexpression of ISG20 is increased in metastases compared to matched primary breast tumor tissues. Our observations reveal that NMI-STAT5A mediated signaling keeps a check on ISG20 expression via miR-17–92 cluster. We show that uncontrolled ISG20 expression drives tumor progression and metastasis.
Childhood maltreatment predicts subsequent anxiety symptoms among Chinese adolescents: the role of the tendency of coping styles
Authors: Guo Lan , Wang Wanxin , Li Wenyan , Zhao Meijun , Wu Ruipeng , Lu Ciyong
Published: June 2021

Childhood maltreatment may have an influence on anxiety symptoms and coping styles. This longitudinal study aimed to estimate the prospective associations between different types of childhood maltreatment and anxiety symptoms among Chinese adolescents, with a particular focus on investigating whether these associations vary by the tendency of coping styles. Data were from the Longitudinal Study of Adolescents’ Mental and Behavioral Well-being Research. The baseline sample included 1957 participants (response rate: 99.03%) and followed up at 1-year later (n = 1836, retention rate: 93.8%). Anxiety symptoms, childhood maltreatment, the tendency of coping styles, morning cortisol level, depressive symptoms, self-esteem, and other demographics were measured. Overall, the mean age of the baseline students was 13.6 (SD: 1.5) years. The final results showed that childhood emotional abuse (unstandardized β-estimate = 0.13, 95% CI = 0.07–0.18), physical abuse (unstandardized β-estimate = 0.08, 95% CI = 0.01–0.16), and sexual abuse (unstandardized β-estimate = 0.17, 95% CI = 0.04–0.29) were positively associated with anxiety symptoms at follow-up after adjusting for significant covariates at baseline. Additionally, the stratified analyses demonstrated that only among students with negative coping styles, childhood emotional abuse, physical abuse, and sexual abuse were associated with subsequent anxiety symptoms; the differences between the positive and negative coping style strata were significant (P < 0.05). Childhood maltreatment appears to be a predictor of anxiety symptoms among adolescents, and the tendency of coping styles may have a moderating role in these longitudinal associations. The efforts to prevent anxiety symptoms are recommended to be focused on adolescents with the experience of childhood maltreatment and negative coping styles.
Epigenetic reprogramming promotes the antiviral action of IFNα in HBV-infected cells
Authors: Gailhouste Luc , Sudoh Masayuki , Qin Xian-Yang , Watashi Koichi , Wakita Takaji , Ochiya Takahiro , Matsuura Tomokazu , Kojima Soichi , Furutani Yutaka
Published: June 2021

Chronic hepatitis B virus (HBV) infections remain a health burden affecting ~250 million people worldwide. Thus far, available interferon-alpha (IFNα)-based therapies have shown unsatisfactory cure rates, and alternative therapeutic molecules are still required. However, their development has been hampered because accessible cell models supporting relevant HBV replication and appropriate antiviral activity are lacking. Strategies that reverse epigenetic alterations offer a unique opportunity for cell reprogramming, which is valuable for restoring altered cellular functions in human cell lines. This work aimed to investigate the feasibility of converting HepG2 cells that stably overexpress the HBV entry receptor (sodium/taurocholate cotransporting polypeptide, NTCP) toward IFNα-responsive cells using epigenetic reprogramming. Herein, we showed that an epigenetic regimen with non-cytotoxic doses of the demethylating compound 5-azacytidine restored the anti-HBV action of IFNα in epigenetically reprogrammed HepG2-NTCP-C4 cells, named REP-HepG2-NTCP cells. Thus, a significant inhibition in HBV DNA levels was measured in REP-HepG2-NTCP cells after IFNα treatment. This inhibitory effect was associated with the enhancement of IFNα-mediated induction of critical interferon-stimulated genes (ISGs), which was limited in non-reprogrammed cells. In particular, our data indicated that re-expression of 2’-5’-oligoadenylate synthetase 1 (OAS1) and interferon regulatory factor 9 (IRF9) was the result of an epigenetically driven unmasking of these genes in reprogrammed cells. At last, we evaluated the therapeutic potential of the IFN analog CDM-3008 in REP-HepG2-NTCP cells and demonstrated the efficiency of this chemical compound in triggering ISG induction and HBV inhibition. In summary, this study shows that epigenetic reprogramming promotes the IFNα response in HBV-infected cells and is potentially attractive for cell-based experimental screening of IFN-like compounds.
Bud endodormancy in deciduous fruit trees: advances and prospects
Authors: Yang Qinsong , Gao Yuhao , Wu Xinyue , Moriguchi Takaya , Bai Songling , Teng Yuanwen
Published: June 2021

Bud endodormancy is a complex physiological process that is indispensable for the survival, growth, and development of deciduous perennial plants. The timely release of endodormancy is essential for flowering and fruit production of deciduous fruit trees. A better understanding of the mechanism of endodormancy will be of great help in the artificial regulation of endodormancy to cope with climate change and in creating new cultivars with different chilling requirements. Studies in poplar have clarified the mechanism of vegetative bud endodormancy, but the endodormancy of floral buds in fruit trees needs further study. In this review, we focus on the molecular regulation of endodormancy induction, maintenance and release in floral buds of deciduous fruit trees. We also describe recent advances in quantitative trait loci analysis of chilling requirements in fruit trees. We discuss phytohormones, epigenetic regulation, and the detailed molecular network controlling endodormancy, centered on SHORT VEGETATIVE PHASE (SVP) and Dormancy-associated MADS-box (DAM) genes during endodormancy maintenance and release. Combining previous studies and our observations, we propose a regulatory model for bud endodormancy and offer some perspectives for the future.
Computational screening study of double transition metal carbonitrides M′2M″CNO2-MXene as catalysts for hydrogen evolution reaction
Authors: Zeng Zhoulan , Chen Xingzhu , Weng Kaiyi , Wu Yang , Zhang Peng , Jiang Jizhou , Li Neng
Published: June 2021

Two-dimensional (2D) transition metal carbonitrides (MXene) have attracted growing interest in electrocatalytic hydrogen production due to its structural and electronic properties. In this work, the hydrogen evolution reaction (HER) activity of all 64 O-terminated ordered double transition metal carbonitrides in the form of M′2M″CNO2 (M′ = Ti, V, Cr, Zr, Nb, Mo, Hf, Ta; M″ = Ti, V, Cr, Zr, Nb, Mo, Hf, Ta) has been investigated by well-defined density functional theory (DFT) calculations. The results indicate that there are 11 M′2M″CNO2-MXene candidates whose HER performance is superior to that of Pt. Moreover, according to the stability screening, it is proved that Ti2NbCNO2, Mo2TiCNO2, and Ti2VCNO2 are more stable than other candidates. Especially, Ti2NbCNO2 have the potential to be perfect HER catalyst with the small Gibbs free energies of hydrogen adsorption (ΔGH) value of 0.02 eV, abundant catalytic sites on the C-side, and better stability. This work paves the way on designing excellent HER catalyst candidates based on M′2M″CNO2-MXenes.
A multiparametric study on the dissolution of synthetic brannerite
Authors: Lin Hantao , Szenknect Stéphanie , Mesbah Adel , Baron Fabien , Beaufort Daniel , Batonneau Yann , Mercadier Julien , Eglinger Aurélien , Turuani Marion , Seydoux-Guillaume Anne-Magali , Goncalves Philippe , Choulet Flavien , Chapon Virginie , Pagel Maurice , Dacheux Nicolas
Published: June 2021

Brannerite, UTi2O6 is reported to occur in various uraniferous deposits worldwide. Natural brannerite specimens are found in the amorphous state and are usually considered to be refractory to dissolution due to the formation of TiO2 passivation layer. In the present work, brannerite was synthesized by wet chemistry route, then characterized prior the development of multiparametric dissolution experiments. The evolution of U and Ti concentrations was followed in 0.1–2 mol/L H2SO4 solutions, for temperatures ranging from 25 to 80 °C, in the presence (or not) of 2.8 g/L of dissolved Fe(III). The dissolution of synthetic brannerite was congruent in the whole experimental domain. The formation of Ti-enriched secondary phase at the surface of the brannerite grains was not evidenced. The dissolution rate constants, activation energies and partial orders of the overall dissolution reaction relative to proton activity were determined in the presence (or absence) of Fe(III). The introduction of Fe(III) in sulfuric acid solutions increased the dissolution rate constant by 5 orders of magnitude and induced significant modifications of the apparent activation energy (from 71 ± 4 to 91 ± 6 kJ/mol) and of the partial order relative to proton activity (from 0.42 ± 0.09 to 0.84 ± 0.08). This study suggested that the uncongruency of the brannerite dissolution and the changes usually observed in the rate-controlling step with temperature could be linked to the loss of the crystal structure in natural samples.
A conditionally replication-defective cytomegalovirus vaccine elicits potent and diverse functional monoclonal antibodies in a phase I clinical trial
Authors: Li Leike , Freed Daniel C. , Liu Yaping , Li Fengsheng , Barrett Diane F. , Xiong Wei , Ye Xiaohua , Adler Stuart P. , Rupp Richard E. , Wang Dai , Zhang Ningyan , Fu Tong-Ming , An Zhiqiang
Published: June 2021

A conditionally replication-defective human cytomegalovirus (HCMV) vaccine, V160, was shown to be safe and immunogenic in a two-part, double-blind, randomized, placebo-controlled phase I clinical trial (NCT01986010). However, the specificities and functional properties of V160-elicited antibodies remain undefined. Here, we characterized 272 monoclonal antibodies (mAbs) isolated from single memory B cells of six V160-vaccinated subjects. The mAbs bind to diverse HCMV antigens, including multiple components of the pentamer, gB, and tegument proteins. The most-potent neutralizing antibodies target the pentamer-UL subunits. The binding sites of the antibodies overlap with those of antibodies responding to natural HCMV infection. The majority of the neutralizing antibodies target the gHgL subunit. The non-neutralizing antibodies predominantly target the gB and pp65 proteins. Sequence analysis indicated that V160 induced a class of gHgL antibodies expressing the HV1-18/KV1-5 germline genes in multiple subjects. This study provides valuable insights into primary targets for anti-HCMV antibodies induced by V160 vaccination.
Intrinsic basis of thermostability of prolyl oligopeptidase from Pyrococcus furiosus
Authors: Banerjee Sahini , Gupta Parth Sarthi Sen , Islam Rifat Nawaz Ul , Bandyopadhyay Amal Kumar
Published: June 2021

Salt-bridges play a key role in the thermostability of proteins adapted in stress environments whose intrinsic basis remains to be understood. We find that the higher hydrophilicity of PfP than that of HuP is due to the charged but not the polar residues. The primary role of these residues is to enhance the salt-bridges and their ME. Unlike HuP, PfP has made many changes in its intrinsic property to strengthen the salt-bridge. First, the desolvation energy is reduced by directing the salt-bridge towards the surface. Second, it has made bridge-energy more favorable by recruiting energetically advantageous partners with high helix-propensity among the six possible salt-bridge pairs. Third, ME-residues that perform intricate interactions have increased their energy contribution by making major changes in their binary properties. The use of salt-bridge partners as ME-residues, and ME-residues' overlapping usage, predominant in helices, and energetically favorable substitution are some of the favorable features of PfP compared to HuP. These changes in PfP reduce the unfavorable, increase the favorable ME-energy. Thus, the per salt-bridge stability of PfP is greater than that of HuP. Further, unfavorable target ME-residues can be identified whose mutation can increase the stability of salt-bridge. The study applies to other similar systems.
Isotonic quadriceps endurance is better associated with daily physical activity than quadriceps strength and power in COPD: an international multicentre cross-sectional trial
Authors: Frykholm Erik , Gephine Sarah , Saey Didier , Lemson Arthur , Klijn Peter , bij de Vaate Eline , Maltais François , van Hees Hieronymus , Nyberg André
Published: June 2021

Knowledge about modifiable determinants of daily physical activity (PA) in patients with chronic obstructive pulmonary disease (COPD) is crucial to design effective PA interventions. The present study aimed to determine the contribution of quadriceps strength, power and endurance to daily PA in COPD. Additionally, for quadriceps endurance, we also aimed to determine to what extent the association varies according to the mode of movement (isotonic, isometric, or isokinetic). Using a multicentre cross-sectional trial design we determined the contribution of quadriceps function to daily PA (steps, sedentary time and time spent doing moderate-to-very-vigorous physical activity [MVPA]) using bivariate and partial Pearson correlation analysis (r) and multiple linear regression models (ΔR2). Pre-determined controlling factors were sex, age, body mass index (BMI), COPD-assessment test, forced expiratory volume in one second in percent of the predicted value (FEV1pred), and distance walked on the 6-minute walk test. Eighty-one patients with COPD (mean ± SD: age 67 ± 8 years, FEV1pred 57 ± 19%, daily steps 4968 ± 3319, daily sedentary time 1016 ± 305 min, and MVPA time 83 ± 45 min) were included. Small to moderate bivariate correlations (r = .225 to .452, p < .05) were found between quadriceps function and measures of PA. The best multiple linear regression models explained 38–49% of the variance in the data. Isotonic endurance was the only muscle contributor that improved all PA models; daily steps (ΔR2 = .04 [relative improvement 13%] p = .026), daily sedentary time (ΔR2 = .07 [23%], p = .005) and MVPA-minutes (ΔR2 = .08 [20%], p = .001). Isotonic endurance was also independently associated with most PA variables, even when controlling for strength, power or isometric-isokinetic endurance properties of the muscle (r = .246 to .384, p < .05). In contrast, neither strength, power, isometric-or isokinetic endurance properties of the muscle was independently associated with PA measures when controlling for isotonic endurance (r = .037 to .219, p > .05). To conclude, strength, power, and endurance properties of the quadriceps were low to moderately associated with PA in patients with COPD. Isotonic quadriceps endurance was the only quadriceps property that was independently associated with the different measures of PA after controlling for a basic set of known determinants of PA, quadriceps strength or power, or isometric or isokinetic quadriceps endurance. Future longitudinal studies should investigate its potential as a modifiable determinant of PA.
Cross-species gene enrichment revealed a single population of Hilsa shad (Tenualosa ilisha) with low genetic variation in Bangladesh waters
Authors: Sarker Anirban , Jiang Junlong , Naher Habibon , Huang Junman , Sarker Kishor Kumar , Yin Guoxing , Baki Mohammad Abdul , Li Chenhong
Published: June 2021

Tenualosa ilisha is a popular anadromous and significant trans-boundary fish. For sustainable management and conservation of this fish, drawing an appropriate picture reflecting population status of this species is very essential based on their all-strategic habitats in Bangladesh. In this study, 139 samples from 18 sites were collected and cross-species gene enrichment method was applied. Like most of the Clupeiforms, nucleotide diversity of this shad was very low (0.001245–0.006612). Population differences between most of the locations were low and not significant (P > 0.05). However, P values of a few locations were significant (P < 0.05) but their pairwise FST values were very poor (0.0042–0.0993), which is inadequate to recognize any local populations. Our study revealed that the presence of a single population in the Bangladesh waters with some admixtured individuals, which may contain partial genes from other populations. Most of the individuals were admixed without showing any precise grouping in the ML IQtree and Network, which might due to their highly migratory nature. Fishes from haors and small coastal rivers were not unique and no genetic differences between migratory cohorts. The hilsa shad fishery should be managed considering it as a single panmictic population in Bangladesh with low genetic diversity.
Defect-induced B4C electrodes for high energy density supercapacitor devices
Authors: Balcı Özge , Buldu Merve , Ammar Ameen Uddin , Kiraz Kamil , Somer Mehmet , Erdem Emre
Published: June 2021

Boron carbide powders were synthesized by mechanically activated annealing process using anhydrous boron oxide (B2O3) and varying carbon (C) sources such as graphite and activated carbon: The precursors were mechanically activated for different times in a high energy ball mill and reacted in an induction furnace. According to the Raman analyses of the carbon sources, the I(D)/I(G) ratio increased from ~ 0.25 to ~ 0.99, as the carbon material changed from graphite to active carbon, indicating the highly defected and disordered structure of active carbon. Complementary advanced EPR analysis of defect centers in B4C revealed that the intrinsic defects play a major role in the electrochemical performance of the supercapacitor device once they have an electrode component made of bare B4C. Depending on the starting material and synthesis conditions the conductivity, energy, and power density, as well as capacity, can be controlled hence high-performance supercapacitor devices can be produced.
Leader-chasing behavior in negative artificial triggered lightning flashes
Authors: Wang Fukun , Wang Jianguo , Cai Li , Su Rui , Ding Wenhan , Xu Zhiling
Published: June 2021

Two special cases of dart leader propagation were observed by the high-speed camera in the leader/return stroke sequences of a classical triggered lightning flash and an altitude-triggered lightning flash, respectively. Different from most of the subsequent return strokes preceded by only one leader, the return stroke in each case was preceded by two leaders occurring successively and competing in the same channel, which herein is named leader-chasing behavior. In one case, the polarity of the latter leader was opposite to that of the former leader and these two combined together to form a new leader, which shared the same polarity with the former leader. In the other case, the latter leader shared the same polarity with the former leader and disappeared after catching up with the former leader. The propagation of the former leader in this case seems not to be significantly influenced by the existence of the latter leader.
Evaluation method for asymmetric uncertainty of quantitative polymerase chain reaction measurements of deoxyribonucleic acids with low copy number
Authors: Ki Unoh , Suzuki Takeru , Nakazawa Satoshi , Yonekawa Yuuki , Watanabe Kazuki , Hashimoto Michie , Hatada Shigeo , Unno Hirotaka
Published: June 2021

Recently, in food safety and various other fields, qualitative and quantitative gene analysis using real-time polymerase chain reaction (PCR) method has become increasingly popular. The limit of detection (LOD) and quantifiable range for these measurements depends on the range and precision of DNA calibrators’ concentrations. Low-copy-number nucleic acid reference materials with low uncertainty produced by an inkjet system have been developed to allow for precise measurements in a low-copy-number region. However, when using a calibrator with a low copy number near one, the copy number distribution is asymmetric. Consequently, the confidence intervals of estimated copy numbers can include negative values when conventional methods of uncertainty estimation are used. A negative confidence interval is irrelevant in the context of copy number, which is always positive value or zero. Here, we propose a method to evaluate the uncertainty of real-time PCR measurements with representative values and an asymmetric 95% confidence interval. Moreover, we use the proposed method for the actual calculation of uncertainty of real-time PCR measurement results for low-copy-number DNA samples and demonstrate that the proposed method can evaluate the precision of real-time PCR measurements more appropriately in a low-copy-number region.
Passively mode locked thulium and thulium/holmium doped fiber lasers using MXene Nb2C coated microfiber
Authors: Ahmad H. , Ramli R. , Ismail N. N. , Aidit S. N. , Yusoff N. , Samion M. Z.
Published: June 2021

As a result of the emergence of two-dimensional (2D) materials for various opto-electronics applications, a new class of materials named MXenes have been attracting interests due to their outstanding nonlinear properties. In this work, an MXene niobium carbide (Nb2C) was proposed and demonstrated as a saturable absorber to induce mode-locking in thulium- and thulium/holmium-doped fiber lasers. The Nb2C solution was first prepared using the liquid exfoliation technique, and then deposited onto a microfiber for integration into the laser cavity. Stable mode-locking operation was observed in both laser cavities, where the center wavelengths of the laser were recorded at 1944 nm for the TDFL and 1950 nm for the THDFL. The generated pulses in the TDFL and THDFL had repetition rates of 9.35 and 11.76 MHz respectively, while their corresponding pulse widths were 1.67 and 1.34 ps. Both of the lasers were highly stable, having SNR values of more than 52 dB and showed no major fluctuations when tested for their long-term stabilities. The results demonstrate an excellent performance of the Nb2C as a saturable absorber, offering opportunities to further explore MXenes for future photonics devices.
Psychosocial stress and cortisol stress reactivity predict breast milk composition
Authors: Ziomkiewicz Anna , Babiszewska Magdalena , Apanasewicz Anna , Piosek Magdalena , Wychowaniec Patrycja , Cierniak Agnieszka , Barbarska Olga , Szołtysik Marek , Danel Dariusz , Wichary Szymon
Published: June 2021

We studied a sample of 146 Polish, exclusively breastfeeding mothers and their healthy born on time infants to explore the effect of perinatal psychosocial stress on breast milk composition. Maternal perinatal stress was assessed using Recent Life Changes Questionnaire summarizing stressful events from the previous six months. Stress reactivity was determined by administering the cold pressor test and measuring cortisol in saliva samples taken during the test. Breast milk sample was taken to measure energy, protein, fat, lactose, and fatty acid content. Analyses revealed that stress reactivity was positively associated with milk fat and long-chain unsaturated fatty acids and negatively associated with milk lactose. Perinatal psychosocial stress negatively affected energy density, fat as well as medium-chain and long-chain saturated fatty acids in milk. These results, together with previous studies, advocate monitoring maternal psychological status during the peripartum to promote breastfeeding and healthy infant nutrition.
Saphenous vein valve assessment utilizing upright CT to potentially improve graft assessment for bypass surgery
Authors: Nakahara Takehiro , Yamada Minoru , Yokoyama Yoichi , Yamada Yoshitake , Narita Keiichi , Imanishi Nobuaki , Yamazaki Masataka , Shimizu Hideyuki , Narula Jagat , Jinzaki Masahiro
Published: June 2021

Saphenous veins (SVs) are frequently employed as bypass grafts. The SV graft failure is predominantly seen at the valve site. Avoiding valves during vein harvest would help reduce graft failure. We endeavored to detect SV valves, tributaries, and vessel size employing upright computed tomography (CT) for the raw cadaver venous samples and in healthy volunteers. Five cadaver legs were scanned. Anatomical analysis showed 3.0 (IQR: 2.0–3.0) valves and 13.50 (IQR: 10.00–16.25) tributaries. The upright CT completely detected, compared to 2.0 (IQR: 1.5–2.5, p = 0.06) valves and 9.5 (IQR: 7.5–13.0, p = 0.13) tributaries by supine CT. From a total of 190 volunteers, 138 (men:75, women:63) were included. The number of valves from the SF junction to 35 cm were significantly higher in upright CT than in supine CT bilaterally [upright vs. supine, Right: 4 (IQR: 3–5) vs. 2 (IQR:1–2), p < 0.0001, Left: 4 (IQR: 3–5) vs. 2 (IQR: 1–2), p < 0.0001]. The number of tributaries and vessel areas per leg were also higher for upright compared with supine CT. Upright CT enables non-invasive detection of SV valves, tributaries, and vessel size. Although not tested here, it is expected that upright CT may potentially improve graft assessment for bypass surgery.
A performance evaluation of despiking algorithms for eddy covariance data
Authors: Vitale Domenico
Published: June 2021

Spike detection for raw high-frequency eddy covariance time series is a challenging task because of the confounding effect caused by complex dynamics and the high level of noise affecting such data. To cope with these features, a new despiking procedure rooted on robust functionals is proposed. By processing simulated data, it is demonstrated that the proposed procedure performs better than the existing algorithms and can be therefore considered as a candidate for the implementation in data center environmental monitoring systems, where the availability of automatic procedures ensuring a high quality standard of released products constitutes an essential prerequisite.
Evaluation of a collaborative model for successful implementation of a National CD4 enumeration EQA program in Cameroon
Authors: Sagnia Bertrand , Kiazyk Sandra , Meyers Adrienne F. A. , Plews Margot , Diallo Tamsir O. , Sosso Samuel Martin , Ambada Georgia , Kamgaing Rachel , Nji Nadesh , Sandstrom Paul , Ball Blake T. , Nchinda Godwin , Ndjolo Alexis
Published: June 2021

Participation in an EQA program is critical to the quality assurance process. Reliable and precise CD4 T-cells enumeration are essential to improve the clinical management of patients by evaluating the disease progression and by monitoring the effectiveness of ART in HIV-patients. The CIRCB, CD4 reference laboratory, in collaboration with the Canadian QASI-program, recruited sites, distributed and analyzed CD4-panels in 61 sites across Cameroon. A trend and performance analysis in the pre-analytical, analytical and post-analytical phases was performed. Continuous training and corrective actions carried out from 2014 to 2018 increased the number of participating sites from 15 to 61 sites, the number of unacceptable results decreased from 50 to 10%. Specific challenges included errors in pre analytic (17.5%), analytic (77.0%) and post-analytic (5.5%) phases. This EQA requires the application of good laboratory practices, fluidic communication between all the stakeholders, continuous training, application of specific on-site corrective measures, and timely equipment maintenance in order to avoid repetitive errors and to increase laboratory performance. It could be extended to other HIV-1 testing like viral load and EID point-of-care. Partnership with QASI serve as a model for implementation of a successful EQA model for resource limited countries wanting to implement EQA for HIV testing and monitoring in alignment with 90–90–90 targets.
Preparation of serum capped silver nanoparticles for selective killing of microbial cells sparing host cells
Authors: Parveen Rehana , Maiti Prasanta Kumar , Murmu Nabendu , Datta Alokmay
Published: June 2021

Following access into the cell, colloidal silver nanoparticles exhibit generalized cytotoxic properties, thus appear as omnipotent microbicidal, but not suitable for systemic use unless are free of toxic effects on host cells. The AgNP-Serum-18 when prepared from silver nitrate, using dextrose as reducing and group-matched homologous serum as a stabilizing agent, selective endocytosis, and oxidative stress-dependent bio-functional damages to the host are mostly eliminated. For their bio-mimicking outer coat, there is the least possibility of internalization into host cells or liberation of excess oxidants in circulation following interaction with erythrocytes or vascular endothelial cells. The presence of infection-specific antibodies in the serum can make such nano-conjugates more selective. A potent antimicrobial action and a wide margin of safety for mammalian cells in comparison with very similar PVA-capped silver nanoparticles have been demonstrated by the in-vitro challenge of such nanoparticles on different microbes, human liver cell-line, and in-vivo study on mice model. This may open up wide-range therapeutic prospects of colloidal nanoparticles.