bluuebunny/crossref_metadata_2025 huggingface dataset:
Modified Humic Substances as Soil Conditioners: Laboratory and Field Trials
Authors: Kulikova Natalia A. , Volikov Alexander B. , Filippova Olga I. , Kholodov Vladimir A. , Yaroslavtseva Nadezhda V. , Farkhodov Yulian R. , Yudina Anna V. , Roznyatovsky Vitaly A. , Grishin Yuri K. , Zhilkibayev Oral T. , Perminova Irina V.
Published: January 2021

The paper is devoted to the development and performance testing of a soil conditioner based on leonardite humic substances (LHS) modified with 3-aminopropyltriethoxysilane (APTES). The modified HS were obtained by adding APTES to LHS solution at different mass ratios of LHS and APTES, followed by the investigation of siloxane structures using 31Si NMR spectroscopy. The Urbic Technosol was used as a model soil. The size and amount of water-stable soil aggregates were estimated using wet sieving and laser diffraction, respectively. Toxicity was evaluated by monitoring microbial substrate-induced respiration (SIR) and seedling bioassay. Laboratory column experiments demonstrated an increase in water-stability of the 3–5 mm soil aggregates after LHS-APTES application. Field tests showed an increase in the average weighted diameter of micro aggregates (from 59 to 73 μm) and water-stable macroaggregates (from 1.6 to 2.9 mm) due to the LHS-APTES amendment. A substantial increase in SIR from 5 to 9 mg CO2 (kg h)−1 was detected. Better survival of seedlings was observed. The obtained beneficial results indicate that APTES-modified HS can be successfully used as a soil conditioner. The formation of extended siloxane networks was suggested as the main mechanism of the observed improvement in the structure of the amended soils.
Trichinella spp. in Wild Boars (Sus scrofa), Brown Bears (Ursus arctos), Eurasian Lynxes (Lynx lynx) and Badgers (Meles meles) in Estonia, 2007–2014
Authors: Kärssin Age , Häkkinen Liidia , Vilem Annika , Jokelainen Pikka , Lassen Brian
Published: January 2021

In this study, we summarize Trichinella findings from four wild, free-ranging host species from Estonia during 2007–2014. Trichinella spp. larvae were detected in 281 (0.9%, 95% confidence interval (CI) 0.8–1.0) of 30,566 wild boars (Sus scrofa), 63 (14.7%, 95% CI 11.6–18.3) of 429 brown bears (Ursus arctos), 59 (65.56%, 95% CI 55.3–74.8) of 90 Eurasian lynxes (Lynx lynx), and three (60.0%, 95% CI 18.2–92.7) of five badgers (Meles meles). All four European Trichinella species were detected: T. britovi in 0.7% of the wild boars, 7.2% of the brown bears, 45.6% of the lynxes, and 40.0% of the badgers; T. nativa in 0.1% of the wild boars, 5.8% of the brown bears, and 20.0% of the lynxes; T. pseudospiralis in 0.02% the wild boars; and T. spiralis in 0.03% of the wild boars and 4.4% of the lynxes. The results include the first description from Estonia of T. britovi in brown bear and badgers, T. pseudospiralis in wild boars, and T. spiralis in wild boars and lynxes. The results indicate high infection pressure in the sylvatic cycles across the years—illustrating continuous risk of spillover to domestic cycles and of transmission to humans.
Prevalence and Characterization of Coagulase Positive Staphylococci from Food Products and Human Specimens in Egypt
Authors: Abdeen Eman E. , Mousa Walid S. , Abdelsalam Sarah Y. , Heikal Hanim S. , Shawish Reyad R. , Nooruzzaman Mohammed , Soliman Mohamed M. , Batiha Gaber E. , Hamad Ahmed , Abdeen Ahmed
Published: January 2021

Methicillin-resistant Staphylococcus aureus (MRSA) strains have veterinary and public health importance as they are responsible for a wide range of difficult to treat infections and food poisoning. Two hundred samples (50 samples each of minced meat, beef luncheon, Karish cheese, and human samples (pus swab from open wounds)) were cultured, and MRSA strains were identified using disk diffusion tests and mecA gene-based PCR. A total of 35% (70/200) of the examined samples were confirmed as coagulase-positive S. aureus in minced meat (46%), beef luncheon (44%), Karish cheese (44%), and human samples (22%). The MRSA strains showed resistance to amoxicillin (91.4%), penicillin (97.1%), cefoxitin (85.7%), cephradine (82.9%), tetracycline (57.2%), and erythromycin (52.8%). More than half of the tested S. aureus isolates harbored the mecA gene. The sequence analysis of the mecA gene from the minced meat, Karish cheese, and human samples revealed high genetic similarities between the S. aureus isolates from these sources. In conclusion, our findings indicate a risk for the transmission of the mecA gene of S. aureus across the food chain between humans and animal food products. Further studies should focus on finding additional epidemiological aspects of the MRSA strains in food chain.
Sensory Processing and Aggressive Behavior in Adults with Autism Spectrum Disorder
Authors: van den Boogert Frank , Sizoo Bram , Spaan Pascalle , Tolstra Sharon , Bouman Yvonne H. A. , Hoogendijk Witte J. G. , Roza Sabine J.
Published: January 2021

Autism spectrum disorder (ASD) may be accompanied by aggressive behavior and is associated with sensory processing difficulties. The present study aims to investigate the direct association between sensory processing and aggressive behavior in adults with ASD. A total of 101 Dutch adult participants with ASD, treated in outpatient or inpatient facilities, completed the Adolescent/Adult Sensory Profile (AASP), the Reactive-Proactive Aggression Questionnaire (RPQ), and the Aggression Questionnaire—Short Form (AQ-SF). Results revealed that sensory processing difficulties are associated with more aggressive behavior (f2=0.25), more proactive (f2=0.19) and reactive aggression (f2=0.27), more physical (f2=0.08) and verbal aggression (f2=0.13), and more anger (f2=0.20) and hostility (f2=0.12). Evidence was found for an interaction of the neurological threshold and behavioral response on total aggression and hostility. Participants with higher scores in comparison to the norm group in sensory sensitivity had the highest risk of aggressive behavior. In conclusion, clinical practice may benefit from applying detailed diagnostics on sensory processing difficulties when treating aggressive behavior in adults with ASD.
Gait Recovery with an Overground Powered Exoskeleton: A Randomized Controlled Trial on Subacute Stroke Subjects
Authors: Molteni Franco , Guanziroli Eleonora , Goffredo Michela , Calabrò Rocco , Pournajaf Sanaz , Gaffuri Marina , Gasperini Giulio , Filoni Serena , Baratta Silvano , Galafate Daniele , Le Pera Domenica , Bramanti Placido , Franceschini Marco ,   on behalf of Italian Eksogait Study Group
Published: January 2021

Background: Overground Robot-Assisted Gait Training (o-RAGT) provides intensive gait rehabilitation. This study investigated the efficacy of o-RAGT in subacute stroke subjects, compared to conventional gait training. Methods: A multicenter randomized controlled trial was conducted on 75 subacute stroke subjects (38 in the Experimental Group (EG) and 37 in the Control Group (CG)). Both groups received 15 sessions of gait training (5 sessions/week for 60 min) and daily conventional rehabilitation. The subjects were assessed at the beginning (T1) and end (T2) of the training period with the primary outcome of a 6 Minutes Walking Test (6MWT), the Modified Ashworth Scale of the Affected lower Limb (MAS-AL), the Motricity Index of the Affected lower Limb (MI-AL), the Trunk Control Test (TCT), Functional Ambulation Classification (FAC), a 10 Meters Walking Test (10MWT), the modified Barthel Index (mBI), and the Walking Handicap Scale (WHS). Results: The 6MWT increased in both groups, which was confirmed by both frequentist and Bayesian analyses. Similar outcomes were registered in the MI-AL, 10MWT, mBI, and MAS-AL. The FAC and WHS showed a significant number of subjects improving in functional and community ambulation in both groups at T2. Conclusions: The clinical effects of o-RAGT were similar to conventional gait training in subacute stroke subjects. The results obtained in this study are encouraging and suggest future clinical trials on the topic.
The Taming of Nuclear Factor Erythroid-2-Related Factor-2 (Nrf2) Deglycation by Fructosamine-3-Kinase (FN3K)-Inhibitors-A Novel Strategy to Combat Cancers
Authors: Beeraka Narasimha M. , Bovilla Venugopal R. , Doreswamy Shalini H. , Puttalingaiah Sujatha , Srinivasan Asha , Madhunapantula SubbaRao V.
Published: January 2021

Glycated stress is mediated by the advanced glycation end products (AGE) and the binding of AGEs to the receptors for advanced glycation end products (RAGEs) in cancer cells. RAGEs are involved in mediating tumorigenesis of multiple cancers through the modulation of several downstream signaling cascades. Glycated stress modulates various signaling pathways that include p38 mitogen-activated protein kinase (p38 MAPK), nuclear factor kappa–B (NF-κB), tumor necrosis factor (TNF)-α, etc., which further foster the uncontrolled proliferation, growth, metastasis, angiogenesis, drug resistance, and evasion of apoptosis in several cancers. In this review, a balanced overview on the role of glycation and deglycation in modulating several signaling cascades that are involved in the progression of cancers was discussed. Further, we have highlighted the functional role of deglycating enzyme fructosamine-3-kinase (FN3K) on Nrf2-driven cancers. The activity of FN3K is attributed to its ability to deglycate Nrf2, a master regulator of oxidative stress in cells. FN3K is a unique protein that mediates deglycation by phosphorylating basic amino acids lysine and arginine in various proteins such as Nrf2. Deglycated Nrf2 is stable and binds to small musculoaponeurotic fibrosarcoma (sMAF) proteins, thereby activating cellular antioxidant mechanisms to protect cells from oxidative stress. This cellular protection offered by Nrf2 activation, in one way, prevents the transformation of a normal cell into a cancer cell; however, in the other way, it helps a cancer cell not only to survive under hypoxic conditions but also, to stay protected from various chemo- and radio-therapeutic treatments. Therefore, the activation of Nrf2 is similar to a double-edged sword and, if not controlled properly, can lead to the development of many solid tumors. Hence, there is a need to develop novel small molecule modulators/phytochemicals that can regulate FN3K activity, thereby maintaining Nrf2 in a controlled activation state.
The Search for an Interesting Partner to Combine with PD-L1 Blockade in Mesothelioma: Focus on TIM-3 and LAG-3
Authors: Marcq Elly , Van Audenaerde Jonas R. M. , De Waele Jorrit , Merlin Céline , Pauwels Patrick , van Meerbeeck Jan P. , Fisher Scott A. , Smits Evelien L. J.
Published: January 2021

Malignant pleural mesothelioma (MPM) is an aggressive cancer that is causally associated with previous asbestos exposure in most afflicted patients. The prognosis of patients remains dismal, with a median overall survival of only 9–12 months, due to the limited effectiveness of any conventional anti-cancer treatment. New therapeutic strategies are needed to complement the limited armamentarium against MPM. We decided to focus on the combination of different immune checkpoint (IC) blocking antibodies (Abs). Programmed death-1 (PD-1), programmed death ligand-1 (PD-L1), T-cell immunoglobulin mucin-3 (TIM-3), and lymphocyte activation gene-3 (LAG-3) blocking Abs were tested as monotherapies, and as part of a combination strategy with a second IC inhibitor. We investigated their effect in vitro by examining the changes in the immune-related cytokine secretion profile of supernatant collected from treated allogeneic MPM-peripheral blood mononuclear cell (PBMC) co-cultures. Based on our in vitro results of cytokine secretion, and flow cytometry data that showed a significant upregulation of PD-L1 on PBMC after co-culture, we chose to further investigate the combinations of anti PD-L1 + anti TIM-3 versus anti PD-L1 + anti LAG-3 therapies in vivo in the AB1-HA BALB/cJ mesothelioma mouse model. PD-L1 monotherapy, as well as its combination with LAG-3 blockade, resulted in in-vivo delayed tumor growth and significant survival benefit.
Genetic Screening for Potential New Targets in Chronic Myeloid Leukemia Based on Drosophila Transgenic for Human BCR-ABL1
Authors: Lo Iacono Marco , Signorino Elisabetta , Petiti Jessica , Pradotto Monica , Calabrese Chiara , Panuzzo Cristina , Caciolli Francesca , Pergolizzi Barbara , De Gobbi Marco , Rege-Cambrin Giovanna , Fava Carmen , Giachino Claudia , Bracco Enrico , Saglio Giuseppe , Frassoni Francesco , Cilloni Daniela
Published: January 2021

Chronic myeloid leukemia is a myeloproliferative neoplasm characterized by the presence of the Philadelphia chromosome that originates from the reciprocal translocation t(9;22)(q34;q11.2) and encodes for the constitutively active tyrosine kinase protein BCR-ABL1 from the Breakpoint Cluster Region (BCR) sequence and the Abelson (ABL1) gene. Despite BCR-ABL1 being one of the most studied oncogenic proteins, some molecular mechanisms remain enigmatic, and several of the proteins, acting either as positive or negative BCR-ABL1 regulators, are still unknown. The Drosophila melanogaster represents a powerful tool for genetic investigations and a promising model to study the BCR-ABL1 signaling pathway. To identify new components involved in BCR-ABL1 transforming activity, we conducted an extensive genetic screening using different Drosophila mutant strains carrying specific small deletions within the chromosomes 2 and 3 and the gmrGal4,UAS-BCR-ABL1 4M/TM3 transgenic Drosophila as the background. From the screening, we identified several putative candidate genes that may be involved either in sustaining chronic myeloid leukemia (CML) or in its progression. We also identified, for the first time, a tight connection between the BCR-ABL1 protein and Rab family members, and this correlation was also validated in CML patients. In conclusion, our data identified many genes that, by interacting with BCR-ABL1, regulate several important biological pathways and could promote disease onset and progression.
Kinetics Study of the Hydrodeoxygenation of Xylitol over a ReOx-Pd/CeO2 Catalyst
Authors: MacQueen Blake , Royko Michael , Crandall Bradie S. , Heyden Andreas , Pagán-Torres Yomaira J. , Lauterbach Jochen
Published: January 2021

In this study, we elucidate the reaction kinetics for the simultaneous hydrodeoxygenation of xylitol to 1,2-dideoxypentitol and 1,2,5-pentanetriol over a ReOx-Pd/CeO2 (2.0 weight% Re, 0.30 weight% Pd) catalyst. The reaction was determined to be a zero-order reaction with respect to xylitol. The activation energy was elucidated through an Arrhenius relationship as well as non-Arrhenius kinetics. The Arrhenius relationship was investigated at 150–170 °C and a constant H2 pressure of 10 bar resulting in an activation energy of 48.7 ± 10.5 kJ/mol. The investigation of non-Arrhenius kinetics was conducted at 120–170 °C and a sub-Arrhenius relation was elucidated with activation energy being dependent on temperature, and ranging from 10.2–51.8 kJ/mol in the temperature range investigated. Internal and external mass transfer were investigated through evaluating the Weisz–Prater criterion and the effect of varying stirring rate on the reaction rate, respectively. There were no internal or external mass transfer limitations present in the reaction.
Oxidation of 5-Hydroxymethylfurfural on Supported Ag, Au, Pd and Bimetallic Pd-Au Catalysts: Effect of the Support
Authors: German Dmitrii , Pakrieva Ekaterina , Kolobova Ekaterina , Carabineiro Sónia A. C. , Stucchi Marta , Villa Alberto , Prati Laura , Bogdanchikova Nina , Cortés Corberán Vicente , Pestryakov Alexey
Published: January 2021

Oxidation of 5-hydroxymethylfurfural (HMF), a major feedstock derived from waste/fresh biomass, into 2,5-furandicarboxylic acid (FDCA) is an important transformation for the production of biodegradable plastics. Herein, we investigated the effect of the support (unmodified and modified titania, commercial alumina, and untreated and treated Sibunit carbon) of mono- and bimetallic catalysts based on noble metals (Ag, Au, Pd) on selective HMF oxidation with molecular oxygen to FDCA under mild and basic reaction conditions. The higher selectivity to FDCA was obtained when metals were supported on Sibunit carbon (Cp). The order of noble metal in terms of catalyst selectivity was: Ag < Au < Pd < PdAu. Finally, FDCA production on the most efficient PdAu NPs catalysts supported on Sibunit depended on the treatment applied to this carbon support in the order: PdAu/Cp < PdAu/Cp-HNO3 < PdAu/Cp-NH4OH. These bimetallic catalysts were characterized by nitrogen adsorption-desorption, inductively coupled plasma atomic emission spectroscopy, high resolution transmission electron microscopy, energy dispersive spectroscopy, X-ray diffraction, Hammet indicator method and X-ray photoelectron spectroscopy. The functionalization of Sibunit surface by HNO3 and NH4OH led to a change in the contribution of the active states of Pd and Au due to promotion effect of N-doping and, as a consequence, to higher FDCA production. HMF oxidation catalyzed by bimetallic catalysts is a structure sensitive reaction.
Nanomaterials Based Electrochemical Sensors for Serotonin Detection: A Review
Authors: Dăscălescu Dorin , Apetrei Constantin
Published: January 2021

The present review deals with the recent progress made in the field of the electrochemical detection of serotonin by means of electrochemical sensors based on various nanomaterials incorporated in the sensitive element. Due to the unique chemical and physical properties of these nanomaterials, it was possible to develop sensitive electrochemical sensors with excellent analytical performances, useful in the practice. The main electrochemical sensors used in serotonin detection are based on carbon electrodes modified with carbon nanotubes and various materials, such as benzofuran, polyalizarin red-S, poly(L-arginine), Nafion/Ni(OH)2, or graphene oxide, incorporating silver-silver selenite nanoparticles, as well as screen-printed electrodes modified with zinc oxide or aluminium oxide. Also, the review describes the nanocomposite sensors based on conductive polymers, tin oxide-tin sulphide, silver/polypyrole/copper oxide or a hybrid structure of cerium oxide-gold oxide nanofibers together with ruthenium oxide nanowires. The presentation focused on describing the sensitive materials, characterizing the sensors, the detection techniques, electroanalytical properties, validation and use of sensors in lab practice.
Phase Transformation and Superstructure Formation in (Ti0.5, Mg0.5)N Thin Films through High-Temperature Annealing
Authors: Gharavi Mohammad Amin , le Febvrier Arnaud , Lu Jun , Greczynski Grzegorz , Alling Björn , Armiento Rickard , Eklund Per
Published: January 2021

(Ti0.5, Mg0.5)N thin films were synthesized by reactive dc magnetron sputtering from elemental targets onto c-cut sapphire substrates. Characterization by θ–2θ X-ray diffraction and pole figure measurements shows a rock-salt cubic structure with (111)-oriented growth and a twin-domain structure. The films exhibit an electrical resistivity of 150 mΩ·cm, as measured by four-point-probe, and a Seebeck coefficient of −25 µV/K. It is shown that high temperature (~800 °C) annealing in a nitrogen atmosphere leads to the formation of a cubic LiTiO2-type superstructure as seen by high-resolution scanning transmission electron microscopy. The corresponding phase formation is possibly influenced by oxygen contamination present in the as-deposited films resulting in a cubic superstructure. Density functional theory calculations utilizing the generalized gradient approximation (GGA) functionals show that the LiTiO2-type TiMgN2 structure has a 0.07 eV direct bandgap.
Temperature Characterization of Liquid Crystal Dielectric Image Line Phase Shifter for Millimeter-Wave Applications
Authors: Tesmer Henning , Razzouk Rani , Polat Ersin , Wang Dongwei , Jakoby Rolf , Maune Holger
Published: January 2021

In this paper we investigate the temperature dependent behavior of a liquid crystal (LC) loaded tunable dielectric image guide (DIG) phase shifter at millimeter-wave frequencies from 80 GHz to 110 GHz for future high data rate communications. The adhesive, necessary for precise fabrication, is analyzed before temperature dependent behavior of the component is shown, using the nematic LC-mixture GT7-29001. The temperature characterization is conducted by changing the temperature of the LC DIG’s ground plane between −10∘C and 80 ∘C. The orientation of the LC molecules, and therefore the effective macroscopic relative permittivity of the DIG, is changed by inserting the temperature setup in a fixture with rotatable magnets. Temperature independent matching can be observed, while the insertion loss gradually increases with temperature for both highest and lowest permittivity of the LC. At 80 ∘C the insertion loss is up to 1.3dB higher and at −10∘C it is 0.6dB lower than the insertion loss present at 20 ∘C. In addition, the achievable differential phase is reduced with increasing temperature. The impact of molecule alignment to this reduction is shown for the phase shifter and an estimated 85% of the anisotropy is still usable with an LC DIG phase shifter when increasing the temperature from 20 ∘C to 80 ∘C. Higher reduction of differential phase is present at higher frequencies as the electrical length of the phase shifter increases. A maximum difference in differential phase of 72∘ is present at 110 GHz, when increasing the temperature from 20 ∘C to 80 ∘C. Nevertheless, a well predictable, quasi-linear behavior can be observed at the covered temperature range, highlighting the potential of LC-based dielectric components at millimeter wave frequencies.
The Biological Roles of lncRNAs and Future Prospects in Clinical Application
Authors: Li Guohui , Deng Liang , Huang Nan , Sun Fenyong
Published: January 2021

Chemo and radiation therapies are the most commonly used therapies for cancer, but they can induce DNA damage, resulting in the apoptosis of host cells. DNA double-stranded breaks (DSBs) are the most lethal form of DNA damage in cells, which are constantly caused by a wide variety of genotoxic agents, both environmentally and endogenously. To maintain genomic integrity, eukaryotic organisms have developed a complex mechanism for the repair of DNA damage. Researches reported that many cellular long noncoding RNAs (lncRNAs) were involved in the response of DNA damage. The roles of lncRNAs in DNA damage response can be regulated by the dynamic modification of N6-adenosine methylation (m6A). The cellular accumulation of DNA damage can result in various diseases, including cancers. Additionally, lncRNAs also play roles in controlling the gene expression and regulation of autophagy, which are indirectly involved with individual development. The dysregulation of these functions can facilitate human tumorigenesis. In this review, we summarized the origin and overview function of lncRNAs and highlighted the roles of lncRNAs involved in the repair of DNA damage.
Norway Spruce Seedlings from an Eastern Baltic Provenance Show Tolerance to Simulated Drought
Authors: Matisons Roberts , Krišāns Oskars , Jansons Āris , Kondratovičs Toms , Elferts Didzis , Ievinsh Gederts
Published: January 2021

In Northern Europe, an increase in heterogeneity of summer precipitation regime will subject forests to water deficit and drought. This is particularly topical for Norway spruce (Picea abies Karst.), which is a drought sensitive, yet economically important species. Nevertheless, local populations still might be highly plastic and tolerant, supporting their commercial application. Accordingly, the tolerance of Norway spruce seedlings from an Eastern Baltic provenance (western part of Latvia) to artificial drought according to soil type was assessed in a shelter experiment. To simulate drought, seedlings were subjected to reduced amounts (0%, 25%, 50%, 75%, and 100%) of naturally occurring precipitation (irrigation intensity). Three soil types (oligotrophic mineral, mesotrophic mineral, and peat) were tested. Seedling height, chlorophyll a concentration, and fluorescence parameters were measured. Both growth and photochemical reactions were affected by the irrigation intensity, the effect of which experienced an interacted with soil type, implying complex controls of drought sensitivity. Seedlings were more sensitive to irrigation intensity on mesotrophic mineral soil, as suggested by growth and photosynthetic activity. However, the responses were nonlinear, as the highest performance (growth and fluorescence parameters) of seedlings occurred in response to intermediate drought. On peat soil, which had the highest water-bearing capacity, an inverse response to irrigation intensity was observed. In general, fluorescence parameters were more sensitive and showed more immediate reaction to soil water deficit than concentration of chlorophyll on mesotrophic mineral and peat soils, while the latter was a better indicator of seedling performance on oligotrophic soil. This indicated considerable plastic acclimation and hence tolerance of seedlings from the local Norway spruce population to drought, though drought sensitivity is age-dependent.
Developing Growth Models of Stand Volume for Subtropical Forests in Karst Areas: A Case Study in the Guizhou Plateau
Authors: Tang Yuzhi , Shao Quanqin , Shi Tiezhu , Wu Guofeng
Published: January 2021

Forest stand volume is one of the key forest structural attributes in estimating and forecasting ecosystem productivity and carbon stock. However, studies on growth modeling and environmental influences on stand volume are still rare to date, especially in subtropical forests in karst areas, which are characterized by a complex species composition and are important in the global carbon budget. In this paper, we developed growth models of stand volume for all the dominant tree species (groups) (DTSG) in a subtropical karst area, the Guizhou Plateau based on an investigation of the effects of various environmental factors on stand volume. The Richards growth function, space-for-time substitution and zonal-hierarchical modeling method were applied in the model fitting, and multiple indices were used in the model evaluation. The results showed that the climatic factors of annual temperature and precipitation, as well as the site factors of stand origin, elevation, slope gradient, topsoil thickness, site quality degree, rocky desertification type and rocky desertification degree, have significant influences on stand volume, and the topsoil thickness and site quality degree have the strongest positive effect. A total of 959 growth equations of stand volume were fitted with a five-level stand classifier (DTSG–climatic zone–site quality degree–stand origin–rocky desertification type). All the growth equations were qualified, because all passed the TRE test (≤30%), and the majority of the R2 ≥ 0.50, above 70% of the RMSE were between 5.0 and 20.0, and above 80% of the P ≥ 75%. These findings provide updated knowledge about the environmental effect on the stand volume growth of subtropical forests in karst areas, and the developed stand volume growth models are convenient for forest management and planning, further contributing to the study of forest carbon storage assessments and global carbon cycling.
Application of FTIR-PAS in Rapid Assessment of Rice Quality under Climate Change Conditions
Authors: Wei Lianlian , Ma Fei , Du Changwen
Published: January 2021

Fourier transform infrared photoacoustic spectroscopy (FTIR-PAS), versus attenuated total reflectance spectroscopy (FTIR-ATR) and diffuse reflectance spectroscopy (DRIFT), was firstly applied in quick assessment of rice quality in response to rising CO2/temperature instead of conventional time-consuming chemical methods. The influences of elevated CO2 and higher temperature were identified using FTIR-PAS spectra by principal component analysis (PCA). Variations in the rice functional groups are crucial indicators for rice identification, and the ratio of the intensities of two selected spectral bands was used for correlation analysis with starch, protein, and lipid content, and the ratios all showed a positive linear correlation (R2 = 0.9103, R2 = 0.9580, and R2 = 0.9246, respectively). Subsequently, changes in nutritional components under future environmental conditions that encompass higher CO2 and temperature were evaluated, which demonstrated the potential of FTIR-PAS to detect the responses of rice to climate change, providing a valuable technique for agricultural production and food security.
Two Faces of Milk Proteins Peptides with Both Allergenic and Multidimensional Health Beneficial Impact—Integrated In Vitro/In Silico Approach
Authors: Ogrodowczyk Anna Maria , Dimitrov Ivan , Wróblewska Barbara
Published: January 2021

The main food-origin antigens that the infant’s body is in contact with are cow’s milk proteins (CMP). Still, CMP are one of the main sources of beneficial biologically active peptides that play a role in treatment of non-communicable diseases. Safe methods to quickly predict the sensitizing potential of food proteins among their range of health-promoting properties are essential. The aim of study was to adapt an integrated approach combining several in silico (IS) studies and in vitro (IV) assays to screen the multifunctionality of CMP-derived peptides. Major histocompatability complex type II MHC II-binders, interleukin-4 and -10 inducers, interferon γ -inducers and immunobioactivity tools were used to predict the peptide-power of inducing allergies or tolerance. A comparison of the peptide profiless revealed the presence of one identical and one overlapping sequence in IS and IV hydrolysate. By IS analysis, four of 24 peptides were found to have high affinity and stimulate IL-4 expression, and by IV, one of seven peptides had this potential (Bos d9 peptide DIPNPIGSENSEK (195–208)). Three IV peptides may induce IL-10 expression. The IV/IS assessment seems promising agents for peptides’ potential determination dedicated only to preliminary screening of peptides. The IV verification is still crucial in further steps of studies.
Numerical Analysis of Viscoelastic Rotating Beam with Variable Fractional Order Model Using Shifted Bernstein–Legendre Polynomial Collocation Algorithm
Authors: Han Cundi , Chen Yiming , Liu Da-Yan , Boutat Driss
Published: January 2021

This paper applies a numerical method of polynomial function approximation to the numerical analysis of variable fractional order viscoelastic rotating beam. First, the governing equation of the viscoelastic rotating beam is established based on the variable fractional model of the viscoelastic material. Second, shifted Bernstein polynomials and Legendre polynomials are used as basis functions to approximate the governing equation and the original equation is converted to matrix product form. Based on the configuration method, the matrix equation is further transformed into algebraic equations and numerical solutions of the governing equation are obtained directly in the time domain. Finally, the efficiency of the proposed algorithm is proved by analyzing the numerical solutions of the displacement of rotating beam under different loads.
An Innovative Personalised Management Program for Older Adults with Parkinson’s Disease: New Concepts and Future Directions
Authors: Varma Piyush , Narayan Lakshanaa , Alty Jane , Painter Virginia , Padmakumar Chandrasekhara
Published: January 2021

Introduction: Parkinson’s disease is a heterogeneous clinical syndrome. Parkinson’s disease in older persons presents with a diverse array of clinical manifestations leading to unique care needs. This raises the need for the healthcare community to proactively address the care needs of older persons with Parkinson’s disease. Though it is tempting to categorise different phenotypes of Parkinson’s disease, a strong evidence based for the same is lacking. There is considerable literature describing the varying clinical manifestations in old age. This article aims to review the literature looking for strategies in personalising the management of an older person with Parkinson’s disease.
A Genotype-Phenotype Correlation Study of Exon Skip-Equivalent In-Frame Deletions and Exon Skip-Amenable Out-of-Frame Deletions across the DMD Gene to Simulate the Effects of Exon-Skipping Therapies: A Meta-Analysis
Authors: Anwar Saeed , He Merry , Lim Kenji Rowel Q. , Maruyama Rika , Yokota Toshifumi
Published: January 2021

Dystrophinopathies are caused by mutations in the DMD gene. Out-of-frame deletions represent most mutational events in severe Duchenne muscular dystrophy (DMD), while in-frame deletions typically lead to milder Becker muscular dystrophy (BMD). Antisense oligonucleotide-mediated exon skipping converts an out-of-frame transcript to an in-frame one, inducing a truncated but partially functional dystrophin protein. The reading frame rule, however, has many exceptions. We thus sought to simulate clinical outcomes of exon-skipping therapies for DMD exons from clinical data of exon skip-equivalent in-frame deletions, in which the expressed quasi-dystrophins are comparable to those resulting from exon-skipping therapies. We identified a total of 1298 unique patients with exon skip-equivalent mutations in patient registries and the existing literature. We classified them into skip-equivalent deletions of each exon and statistically compared the ratio of DMD/BMD and asymptomatic individuals across the DMD gene. Our analysis identified that five exons are associated with significantly milder phenotypes than all other exons when corresponding exon skip-equivalent in-frame deletion mutations occur. Most exon skip-equivalent in-frame deletions were associated with a significantly milder phenotype compared to corresponding exon skip-amenable out-of-frame mutations. This study indicates the importance of genotype-phenotype correlation studies in the rational design of exon-skipping therapies.
Numerical Modelling Assisted Design of a Compact Ultrafiltration (UF) Flat Sheet Membrane Module
Authors: Bopape Mokgadi F , Van Geel Tim , Dutta Abhishek , Van der Bruggen Bart , Onyango Maurice Stephen
Published: January 2021

The increasing adoption of ultra-low pressure (ULP) membrane systems for drinking water treatment in small rural communities is currently hindered by a limited number of studies on module design. Detailed knowledge on both intrinsic membrane transport properties and fluid hydrodynamics within the module is essential in understanding ULP performance prediction, mass transfer analysis for scaling-up between lab-scale and industrial scale research. In comparison to hollow fiber membranes, flat sheet membranes present certain advantages such as simple manufacture, sheet replacement for cleaning, moderate packing density and low to moderate energy usage. In the present case study, a numerical model using computational fluid dynamics (CFD) of a novel custom flat sheet membrane module has been designed in 3D to predict fluid flow conditions. The permeate flux through the membrane decreased with an increase in spacer curviness from 2.81 L/m2h for no (0%) curviness to 2.73 L/m2h for full (100%) curviness. A parametric analysis on configuration variables was carried out to determine the optimum design variables and no significant influence of spacer inflow or outflow thickness on the fluid flow were observed. The numerical model provides the necessary information on the role of geometrical and operating parameters for fabricating a module prototype where access to technical expertise is limited.
The Influence of Oily Vehicle Composition and Vehicle-Membrane Interactions on the Diffusion of Model Permeants across Barrier Membranes
Authors: Najib Omaima N. , Martin Gary P. , Kirton Stewart B. , Botha Michelle J. , Sallam Al-Sayed , Murnane Darragh
Published: January 2021

In many instances, one or more components of a pharmaceutical or cosmetic formulation is an oil. The aims of this study were two-fold. First, to examine the potential of preferential uptake of one oily vehicle component over another into a model barrier membrane (silicone) from blended vehicles (comprising two from the common excipients isohexadecane (IHD), hexadecane (HD), isopropyl myristate (IPM), oleic acid (OA) and liquid paraffin). Second, to study the effect of membrane-vehicle interactions on the diffusion of model permeants (caffeine (CF), methyl paraben (MP) and butyl paraben (BP)) from blended vehicles. Selective sorption and partition of some oils (especially IHD and IPM) at the expense of other oils (such as OA) was demonstrated to take place. For example, the membrane composition of IHD was enriched compared to a donor solution of IHD-OA: 41%, 63% and 82% IHD, compared to donor solution composition of 25%, 50% and 75% IHD, respectively. Pre-soaking the membrane in IHD, HD or LP, rather than phosphate buffer, enhanced the flux of MP through the membrane by 2.6, 1.7 and 1.3 times, respectively. The preferential sorption of individual oil components from mixtures altered the barrier properties of silicone membrane, and enhanced the permeation of CF, MP and BP, which are typically co-formulated in topical products.
L-Carnitine and Acylcarnitines: Mitochondrial Biomarkers for Precision Medicine
Authors: McCann Marc R. , George De la Rosa Mery Vet , Rosania Gus R. , Stringer Kathleen A.
Published: January 2021

Biomarker discovery and implementation are at the forefront of the precision medicine movement. Modern advances in the field of metabolomics afford the opportunity to readily identify new metabolite biomarkers across a wide array of disciplines. Many of the metabolites are derived from or directly reflective of mitochondrial metabolism. L-carnitine and acylcarnitines are established mitochondrial biomarkers used to screen neonates for a series of genetic disorders affecting fatty acid oxidation, known as the inborn errors of metabolism. However, L-carnitine and acylcarnitines are not routinely measured beyond this screening, despite the growing evidence that shows their clinical utility outside of these disorders. Measurements of the carnitine pool have been used to identify the disease and prognosticate mortality among disorders such as diabetes, sepsis, cancer, and heart failure, as well as identify subjects experiencing adverse drug reactions from various medications like valproic acid, clofazimine, zidovudine, cisplatin, propofol, and cyclosporine. The aim of this review is to collect and interpret the literature evidence supporting the clinical biomarker application of L-carnitine and acylcarnitines. Further study of these metabolites could ultimately provide mechanistic insights that guide therapeutic decisions and elucidate new pharmacologic targets.
Two Metabolomics Phenotypes of Human Hepatocellular Carcinoma in Non-Alcoholic Fatty Liver Disease According to Fibrosis Severity
Authors: Buchard Benjamin , Teilhet Camille , Abeywickrama Samarakoon Natali , Massoulier Sylvie , Joubert-Zakeyh Juliette , Blouin Corinne , Reynes Christelle , Sabatier Robert , Biesse-Martin Anne-Sophie , Vasson Marie-Paule , Abergel Armando , Demidem Aicha
Published: January 2021

Non-Alcoholic Fatty Liver Disease (NAFLD) is considered as the forthcoming predominant cause for hepatocellular carcinoma (HCC). NAFLD-HCC may rise in non-cirrhotic livers in 40 to 50% of patients. The aim of this study was to identify different metabolic pathways of HCC according to fibrosis level (F0F1 vs. F3F4). A non-targeted metabolomics strategy was applied. We analyzed 52 pairs of human HCC and adjacent non-tumoral tissues which included 26 HCC developed in severe fibrosis or cirrhosis (F3F4) and 26 in no or mild fibrosis (F0F1). Tissue extracts were analyzed using 1H-Nuclear Magnetic Resonance spectroscopy. An optimization evolutionary method based on genetic algorithm was used to identify discriminant metabolites. We identified 34 metabolites differentiating the two groups of NAFLD-HCC according to fibrosis level, allowing us to propose two metabolomics phenotypes of NAFLD-HCC. We showed that HCC-F0F1 mainly overexpressed choline derivatives and glutamine, whereas HCC-F3F4 were characterized by a decreased content of monounsaturated fatty acids (FA), an increase of saturated FA and an accumulation of branched amino acids. Comparing HCC-F0F1 and HCC-F3F4, differential expression levels of glucose, choline derivatives and phosphoethanolamine, monounsaturated FA, triacylglycerides were identified as specific signatures. Our metabolomics analysis of HCC tissues revealed for the first time two phenotypes of HCC developed in NAFLD according to fibrosis level. This study highlighted the impact of the underlying liver disease on metabolic reprogramming of the tumor.
Numerical Study of Multivortex Regulation in Curved Microchannels with Ultra-Low-Aspect-Ratio
Authors: Shen Shaofei , Gao Mengqi , Zhang Fangjuan , Niu Yanbing
Published: January 2021

The field of inertial microfluidics has been significantly advanced in terms of application to fluid manipulation for biological analysis, materials synthesis, and chemical process control. Because of their superior benefits such as high-throughput, simplicity, and accurate manipulation, inertial microfluidics designs incorporating channel geometries generating Dean vortexes and helical vortexes have been studied extensively. However, existing technologies have not been studied by designing low-aspect-ratio microchannels to produce multi-vortexes. In this study, an inertial microfluidic device was developed, allowing the generation and regulation of the Dean vortex and helical vortex through the introduction of micro-obstacles in a semicircular microchannel with ultra-low aspect ratio. Multi-vortex formations in the vertical and horizontal planes of four dimension-confined curved channels were analyzed at different flow rates. Moreover, the regulation mechanisms of the multi-vortex were studied systematically by altering the micro-obstacle length and channel height. Through numerical simulation, the regulation of dimensional confinement in the microchannel is verified to induce the Dean vortex and helical vortex with different magnitudes and distributions. The results provide insights into the geometry-induced secondary flow mechanism, which can inspire simple and easily built planar 2D microchannel systems with low-aspect-ratio design with application in fluid manipulations for chemical engineering and bioengineering.
The Lavrion Mines: A Unique Site of Geological and Mineralogical Heritage
Authors: Voudouris Panagiotis , Melfos Vasilios , Mavrogonatos Constantinos , Photiades Adonis , Moraiti Eugenia , Rieck Branko , Kolitsch Uwe , Tarantola Alexandre , Scheffer Christophe , Morin Denis , Vanderhaeghe Olivier , Spry Paul G. , Ross James , Soukis Konstantinos , Vaxevanopoulos Markos , Pekov Igor V. , Chukanov Nikita V. , Magganas Andreas , Kati Marianna , Katerinopoulos Athanasios , Zaimis Stefanos
Published: January 2021

The Lavrion area corresponds to the western part of the Attic-Cycladic metamorphic belt, in the back-arc region of the active Hellenic subduction zone. Between the Eocene and the Miocene, metamorphic rocks (mainly marbles and schists) underwent several stages of metamorphism and deformation due to collision and collapse of the Cycladic belt. Exhumation during the Miocene was accommodated by the movement of a large-scale detachment fault system, which also enhanced emplacement of magmatic rocks, leading to the formation of the famous Lavrion silver deposits. The area around the mines shows the stacking of nappes, with ore deposition mainly localized within the marbles, at marble-schist contacts, below, within, or above the detachment. The Lavrion deposit comprises five genetically-related but different styles of mineralization, a feature never observed in another ore deposit elsewhere, containing the highest number of different elements of any known mining district. The local geology, tectonic, and magmatic activity were fundamental factors in determining how and when the mineralization formed. Other key factors, such as the rise and the fall of sea level, which resulted from climate change over the last million years, were also of major importance for the subsequent surface oxidation at Lavrion that created an unmatched diversity of secondary minerals. As a result, the Lavrion deposit contains 638 minerals of which Lavrion is type-locality for 23 of them, which is nearly 12% of all known species. Apart from being famous for its silver exploitation, this mining district contains more minerals than any other district on Earth. The unique geological, mineralogical, and educational (mining, archaeological, and environmental) features suggest that it is highly suitable to be developed as a future UNESCO Global Geopark.
Glycan-to-Glycan Binding: Molecular Recognition through Polyvalent Interactions Mediates Specific Cell Adhesion
Authors: Misevic Gradimir , Garbarino Emanuela
Published: January 2021

Glycan-to-glycan binding was shown by biochemical and biophysical measurements to mediate xenogeneic self-recognition and adhesion in sponges, stage-specific cell compaction in mice embryos, and in vitro tumor cell adhesion in mammals. This intermolecular recognition process is accepted as the new paradigm accompanying high-affinity and low valent protein-to-protein and protein-to-glycan binding in cellular interactions. Glycan structures in sponges have novel species-specific sequences. Their common features are the large size >100 kD, polyvalency >100 repeats of the specific self-binding oligosaccharide, the presence of fucose, and sulfated and/or pyruvylated hexoses. These structural and functional properties, different from glycosaminoglycans, inspired their classification under the glyconectin name. The molecular mechanism underlying homophilic glyconectin-to-glyconectin binding relies on highly polyvalent, strong, and structure-specific interactions of small oligosaccharide motifs, possessing ultra-weak self-binding strength and affinity. Glyconectin localization at the glycocalyx outermost cell surface layer suggests their role in the initial recognition and adhesion event during the complex and multistep process. In mammals, Lex-to-Lex homophilic binding is structure-specific and has ultra-weak affinity. Cell adhesion is achieved through highly polyvalent interactions, enabled by clustering of small low valent structure in plasma membranes.
Modeling and Numerical Investigation of Transient Two-Phase Flow with Liquid Phase Change in Porous Media
Authors: He Fei , Dong Wenjie , Wang Jianhua
Published: January 2021

Two-phase flow with phase change in microstructure or nanostructure is an important issue in many fronts and critical applications nowadays, but with a lack of comprehensive understanding of the mechanism. This paper numerically investigates the transient behavior of two-phase flow with liquid phase change in the porous media, which consists of a series of connected pores at micro and nanoscale with the transient form of the semi-mixed model and self-compiled programs. Transient variation and spatial distribution of structure temperature, thermal non-equilibrium characteristic, phase change location and fluid-driven pressure are obtained and analyzed, and effects of initial system temperature, structure parameter and material property on the transient behaviors of two-phase flow and fluid-structure coupling heat transfer are discussed. The numerical simulations indicate that the two-phase flow with phase change in porous media is complex and ever-changing before reaching a steady state and affected by the above-mentioned three kinds of parameters significantly. Particularly, distinct phenomena of transient heat transfer deterioration and vapor block are discovered, and it is revealed that the transient heat transfer deterioration and vapor block are more serious in a porous matrix with smaller porosity and made of materials with higher heat capacity and density.