bluuebunny/crossref_metadata_2025 huggingface dataset:
Species-specific host factors rather than virus-intrinsic virulence determine primate lentiviral pathogenicity
Authors: Joas Simone , Parrish Erica H. , Gnanadurai Clement W. , Lump Edina , Stürzel Christina M. , Parrish Nicholas F. , Learn Gerald H. , Sauermann Ulrike , Neumann Berit , Rensing Kerstin Mätz , Fuchs Dietmar , Billingsley James M. , Bosinger Steven E. , Silvestri Guido , Apetrei Cristian , Huot Nicolas , Garcia-Tellez Thalia , Müller-Trutwin Michaela , Hotter Dominik , Sauter Daniel , Stahl-Hennig Christiane , Hahn Beatrice H. , Kirchhoff Frank
Published: April 2018

HIV-1 causes chronic inflammation and AIDS in humans, whereas related simian immunodeficiency viruses (SIVs) replicate efficiently in their natural hosts without causing disease. It is currently unknown to what extent virus-specific properties are responsible for these different clinical outcomes. Here, we incorporate two putative HIV-1 virulence determinants, i.e., a Vpu protein that antagonizes tetherin and blocks NF-κB activation and a Nef protein that fails to suppress T cell activation via downmodulation of CD3, into a non-pathogenic SIVagm strain and test their impact on viral replication and pathogenicity in African green monkeys. Despite sustained high-level viremia over more than 4 years, moderately increased immune activation and transcriptional signatures of inflammation, the HIV-1-like SIVagm does not cause immunodeficiency or any other disease. These data indicate that species-specific host factors rather than intrinsic viral virulence factors determine the pathogenicity of primate lentiviruses.
Lipoprotein lipase regulates hematopoietic stem progenitor cell maintenance through DHA supply
Authors: Liu Chao , Han Tianxu , Stachura David L. , Wang Huawei , Vaisman Boris L. , Kim Jungsu , Klemke Richard L. , Remaley Alan T. , Rana Tariq M. , Traver David , Miller Yury I.
Published: April 2018

Lipoprotein lipase (LPL) mediates hydrolysis of triglycerides (TGs) to supply free fatty acids (FFAs) to tissues. Here, we show that LPL activity is also required for hematopoietic stem progenitor cell (HSPC) maintenance. Knockout of Lpl or its obligatory cofactor Apoc2 results in significantly reduced HSPC expansion during definitive hematopoiesis in zebrafish. A human APOC2 mimetic peptide or the human very low-density lipoprotein, which carries APOC2, rescues the phenotype in apoc2 but not in lpl mutant zebrafish. Creating parabiotic apoc2 and lpl mutant zebrafish rescues the hematopoietic defect in both. Docosahexaenoic acid (DHA) is identified as an important factor in HSPC expansion. FFA-DHA, but not TG-DHA, rescues the HSPC defects in apoc2 and lpl mutant zebrafish. Reduced blood cell counts are also observed in Apoc2 mutant mice at the time of weaning. These results indicate that LPL-mediated release of the essential fatty acid DHA regulates HSPC expansion and definitive hematopoiesis.
Response of carbon cycle to drier conditions in the mid-Holocene in central China
Authors: Huang Xianyu , Pancost Richard D. , Xue Jiantao , Gu Yansheng , Evershed Richard P. , Xie Shucheng
Published: April 2018

The nature and extent to which hydrological changes induced by the Asian summer monsoon affected key biogeochemical processes remain poorly defined. This study explores the relationship between peatland drying and carbon cycling on centennial timescales in central China using lipid biomarkers. The difference between peat n-alkane δ2H and a nearby stalagmite δ18O record reveals that intervals of prominent peatland drying occurred during the mid-Holocene. Synchronous with these drier conditions, leaf wax δ13C values show large negative excursions, with the utilization of CO2 respired from the peatland subsurface for plant photosynthesis being a possible mechanism. Crucially, successive drying events appear to have had a cumulative impact on the susceptibility of peat carbon stores to climate change. Concurrently, bacterially derived hopane δ13C values suggest the occurrence of enhanced methane oxidation during the drier periods. Collectively, these observations expand our understanding of how respiration and degradation of peat are enhanced during drying events.
Photonic zero mode in a non-Hermitian photonic lattice
Authors: Pan Mingsen , Zhao Han , Miao Pei , Longhi Stefano , Feng Liang
Published: April 2018

Zero-energy particles (such as Majorana fermions) are newly predicted quasiparticles and are expected to play an important role in fault-tolerant quantum computation. In conventional Hermitian quantum systems, however, such zero states are vulnerable and even become vanishing if couplings with surroundings are of the same topological nature. Here we demonstrate a robust photonic zero mode sustained by a spatial non-Hermitian phase transition in a parity-time (PT) symmetric lattice, despite the same topological order across the entire system. The non-Hermitian-enhanced topological protection ensures the reemergence of the zero mode at the phase transition interface when the two semi-lattices under different PT phases are decoupled effectively in their real spectra. Residing at the midgap level of the PT symmetric spectrum, the zero mode is topologically protected against topological disorder. We experimentally validated the robustness of the zero-energy mode by ultrafast heterodyne measurements of light transport dynamics in a silicon waveguide lattice.
Observation of elastic topological states in soft materials
Authors: Li Shuaifeng , Zhao Degang , Niu Hao , Zhu Xuefeng , Zang Jianfeng
Published: April 2018

Topological elastic metamaterials offer insight into classic motion law and open up opportunities in quantum and classic information processing. Theoretical modeling and numerical simulation of elastic topological states have been reported, whereas the experimental observation remains relatively unexplored. Here we present an experimental observation and numerical simulation of tunable topological states in soft elastic metamaterials. The on-demand reversible switch in topological phase has been achieved by changing filling ratio, tension, and/or compression of the elastic metamaterials. By combining two elastic metamaterials with distinct topological invariants, we further demonstrate the formation and dynamic tunability of topological interface states by mechanical deformation, and the manipulation of elastic wave propagation. Moreover, we provide a topological phase diagram of elastic metamaterials under deformation. Our approach to dynamically control interface states in soft materials paves the way to various phononic systems involving thermal management and soft robotics requiring better use of energy.
Archean phosphorus liberation induced by iron redox geochemistry
Authors: Herschy Barry , Chang Sae Jung , Blake Ruth , Lepland Aivo , Abbott-Lyon Heather , Sampson Jacqueline , Atlas Zachary , Kee Terence P. , Pasek Matthew A.
Published: April 2018

The element phosphorus (P) is central to ecosystem growth and is proposed to be a limiting nutrient for life. The Archean ocean may have been strongly phosphorus-limited due to the selective binding of phosphate to iron oxyhydroxide. Here we report a new route to solubilizing phosphorus in the ancient oceans: reduction of phosphate to phosphite by iron(II) at low (<200 °C) diagenetic temperatures. Reduction of phosphate to phosphite was likely widespread in the Archean, as the reaction occurs rapidly and is demonstrated from thermochemical modeling, experimental analogs, and detection of phosphite in early Archean rocks. We further demonstrate that the higher solubility of phosphite compared to phosphate results in the liberation of phosphorus from ferruginous sediments. This phosphite is relatively stable after its formation, allowing its accumulation in the early oceans. As such, phosphorus, not as phosphate but as phosphite, could have been a major nutrient in early pre-oxygenated oceans.
Stimulus dependent diversity and stereotypy in the output of an olfactory functional unit
Authors: Arneodo Ezequiel M. , Penikis Kristina B. , Rabinowitz Neil , Licata Angela , Cichy Annika , Zhang Jingji , Bozza Thomas , Rinberg Dmitry
Published: April 2018

Olfactory inputs are organized in an array of functional units (glomeruli), each relaying information from sensory neurons expressing a given odorant receptor to a small population of output neurons, mitral/tufted (MT) cells. MT cells respond heterogeneously to odorants, and how the responses encode stimulus features is unknown. We recorded in awake mice responses from “sister” MT cells that receive input from a functionally characterized, genetically identified glomerulus, corresponding to a specific receptor (M72). Despite receiving similar inputs, sister MT cells exhibit temporally diverse, concentration-dependent, excitatory and inhibitory responses to most M72 ligands. In contrast, the strongest known ligand for M72 elicits temporally stereotyped, early excitatory responses in sister MT cells, consistent across a range of concentrations. Our data suggest that information about ligand affinity is encoded in the collective stereotypy or diversity of activity among sister MT cells within a glomerular functional unit in a concentration-tolerant manner.
Magnetically-driven phase transformation strengthening in high entropy alloys
Authors: Niu Changning , LaRosa Carlyn R. , Miao Jiashi , Mills Michael J. , Ghazisaeidi Maryam
Published: April 2018

CrCoNi alloy exhibits a remarkable combination of strength and plastic deformation, even superior to the CrMnFeCoNi high-entropy alloy. We connect the magnetic and mechanical properties of CrCoNi, via a magnetically tunable phase transformation. While both alloys crystallize as single-phase face-centered-cubic (fcc) solid solutions, we find a distinctly lower-energy phase in CrCoNi alloy with a hexagonal close-packed (hcp) structure. Comparing the magnetic configurations of CrCoNi with those of other equiatomic ternary derivatives of CrMnFeCoNi confirms that magnetically frustrated Mn eliminates the fcc-hcp energy difference. This highlights the unique combination of chemistry and magnetic properties in CrCoNi, leading to a fcc-hcp phase transformation that occurs only in this alloy, and is triggered by dislocation slip and interaction with internal boundaries. This phase transformation sets CrCoNi apart from the parent quinary, and its other equiatomic ternary derivatives, and provides a new way for increasing strength without compromising plastic deformation.
Tracking the evolution of intergranular corrosion through twin-related domains in grain boundary networks
Authors: Barr Christopher M. , Thomas Sebastian , Hart James L. , Harlow Wayne , Anber Elaf , Taheri Mitra L.
Published: April 2018

Tailoring the grain boundary network is desired to improve grain boundary-dependent phenomena such as intergranular corrosion. An important grain boundary network descriptor in heavily twinned microstructures is the twin-related domain, a cluster of twin-related grains. We indicate the advantages of using twin-related domains and subsequent statistics to provide new insight into how a grain boundary networks respond to intergranular corrosion in a heavily twinned grain boundary engineered 316L stainless steel. The results highlight that intergranular corrosion is typically arrested inside twin-related domains at coherent twins or low-angle grain boundaries. Isolated scenarios exist, however, where intergranular corrosion propagation persists in the grain boundary network through higher-order twin-related boundaries.
Improvement in the management of chronic obstructive pulmonary disease following a clinical educational program: results from a prospective cohort study in the Sicilian general practice setting
Authors: Ferrara Rosarita , Ientile Valentina , Piccinni Carlo , Pasqua Alessandro , Pecchioli Serena , Fontana Andrea , Alecci Umberto , Scoglio Riccardo , Magliozzo Francesco , Torrisi Sebastiano Emanuele , Vancheri Carlo , Vitulo Patrizio , Fantaci Giovanna , Ferrajolo Carmen , Cazzola Mario , Cricelli Claudio , Caputi Achille Patrizio , Trifirò Gianluca
Published: April 2018

Chronic obstructive pulmonary disease (COPD) is a chronic inflammatory disorder of the lungs associated with progressive disability. Although general practitioners (GPs) should play an important role in the COPD management, critical issues have been documented in the primary care setting. The aim of this study was to evaluate the effectiveness of an educational program for the improvement of the COPD management in a Sicilian general practice setting. The effectiveness of the program, was evaluated by comparing 15 quality-of-care indicators developed from data extracted by 33 GPs, at baseline vs. 12 and 24 months, and compared with data from a national primary care database (HSD). Moreover, data on COPD-related and all-cause hospitalizations over time of COPD patients, was measured. Overall, 1,465 patients (3.2%) had a registered diagnosis of COPD at baseline vs. 1,395 (3.0%) and 1,388 (3.0%) over time (vs. 3.0% in HSD). COPD patients with one spirometry registered increased from 59.7% at baseline to 73.0% after 2 years (vs. 64.8% in HSD). Instead, some quality of care indicators where not modified such as proportion of COPD patients treated with ICS in monotherapy that was almost stable during the study period: 9.6% (baseline) vs. 9.9% (after 2 years), vs. 7.7% in HSD. COPD-related and all-cause hospitalizations of patients affected by COPD decreased during the two observation years (from 6.9% vs. 4.0%; from 23.0% vs. 18.9%, respectively). Our study showed that educational program involving specialists, clinical pharmacologists and GPs based on training events and clinical audit may contribute to partly improve both diagnostic and therapeutic management of COPD in primary care setting, despite this effect may vary across GPs and indicators of COPD quality of care.
Broken symmetries, non-reciprocity, and multiferroicity
Authors: Cheong Sang-Wook , Talbayev Diyar , Kiryukhin Valery , Saxena Avadh
Published: April 2018

The interplay of space and time symmetries, ferroic properties, chirality and notions of reciprocity determines many of the technologically important properties of materials such as optical diode effect, e.g., in polar ferromagnet FeZnMo3O8. We illustrate these concepts, including the non-reciprocal directional dichroism, through a number of practical examples. In particular, the conditions for non-reciprocity of ferro-rotational order are discussed and the possible use of linear optical gyration is suggested as a way to detect ferro-rotational domains. In addition, we provide the means to achieve high-temperature optical diode effect and elucidate multiferroic behaviors as a result of helical vs. cycloidal spins. Finally, we identify different entities behaving similarly under all symmetry operations, which are useful to understand non-reciprocity and multiferroicity in various materials intuitively.
DNA methylation signatures of educational attainment
Authors: van Dongen Jenny , Bonder Marc Jan , Dekkers Koen F. , Nivard Michel G. , van Iterson Maarten , Willemsen Gonneke , Beekman Marian , van der Spek Ashley , van Meurs Joyce B. J. , Franke Lude , Heijmans Bastiaan T. , van Duijn Cornelia M. , Slagboom P. Eline , Boomsma Dorret I. ,   BIOS consortium, Heijmans Bastiaan T. , ’t Hoen Peter A. C. , van Meurs Joyce , Isaacs Aaron , Jansen Rick , Franke Lude , Boomsma Dorret I. , Pool René , van Dongen Jenny , Hottenga Jouke J. , van Greevenbroek Marleen MJ , Stehouwer Coen D. A. , van der Kallen Carla J. H. , Schalkwijk Casper G. , Wijmenga Cisca , Franke Lude , Zhernakova Sasha , Tigchelaar Ettje F. , Slagboom P. Eline , Beekman Marian , Deelen Joris , van Heemst Diana , Veldink Jan H. , van den Berg Leonard H. , van Duijn Cornelia M. , Hofman Bert A. , Isaacs Aaron , Uitterlinden André G. , van Meurs Joyce , Jhamai P. Mila , Verbiest Michael , Suchiman H. Eka D. , Verkerk Marijn , van der Breggen Ruud , van Rooij Jeroen , Lakenberg Nico , Mei Hailiang , van Iterson Maarten , van Galen Michiel , Bot Jan , Zhernakova Dasha V. , Jansen Rick , van’t Hof Peter , Deelen Patrick , Nooren Irene , ’t Hoen Peter A. C. , Heijmans Bastiaan T. , Moed Matthijs , Franke Lude , Vermaat Martijn , Zhernakova Dasha V. , Luijk René , Bonder Marc Jan , van Iterson Maarten , Deelen Patrick , van Dijk Freerk , van Galen Michiel , Arindrarto Wibowo , Kielbasa Szymon M. , Swertz Morris A. , van Zwet Erik W. , Jansen Rick , Hoen Peter-Bram’t , Heijmans Bastiaan T.
Published: April 2018

Educational attainment is a key behavioural measure in studies of cognitive and physical health, and socioeconomic status. We measured DNA methylation at 410,746 CpGs (N = 4152) and identified 58 CpGs associated with educational attainment at loci characterized by pleiotropic functions shared with neuronal, immune and developmental processes. Associations overlapped with those for smoking behaviour, but remained after accounting for smoking at many CpGs: Effect sizes were on average 28% smaller and genome-wide significant at 11 CpGs after adjusting for smoking and were 62% smaller in never smokers. We examined sources and biological implications of education-related methylation differences, demonstrating correlations with maternal prenatal folate, smoking and air pollution signatures, and associations with gene expression in cis, dynamic methylation in foetal brain, and correlations between blood and brain. Our findings show that the methylome of lower-educated people resembles that of smokers beyond effects of their own smoking behaviour and shows traces of various other exposures.
The focal alteration and causal connectivity in children with new-onset benign epilepsy with centrotemporal spikes
Authors: Chen Sihan , Fang Jiajia , An Dongmei , Xiao Fenglai , Chen Deng , Chen Tao , Zhou Dong , Liu Ling
Published: April 2018

The aim of the current study was to find the epileptic focus and examine its causal relationship to other brain regions in children with new-onset benign childhood epilepsy with centrotemporal spikes (BECTS). Resting-state functional magnetic resonance imaging (fMRI) was performed in 66 children with BECTS and 37 matched control children. We compared the amplitude of low frequency fluctuation (ALFF) signals between the two groups to find the potential epileptogenic zone (EZ), then used Granger causality analysis (GCA) to explore the causal effects of EZ on the whole brain. Children with BECTS had significantly increased ALFF in the right Broca’s area, and decreased ALFF in bilateral fusiform gyrus. The patients also showed increased driving effect from the EZ in Broca’s area to the right prefrontal lobe, and decreased effects to the frontal lobe and posterior parts of the language network. The causal effect on left Wernicke’s area negatively correlated with verbal IQ (VIQ) score. Our research on new-onset BECTS patients illustrates a possible compensatory mechanism in the language network at early stages of BECTS, and the negative correlation of GCA and VIQ suggest the disturbance of epileptiform activity on language. These findings shed light on the mechanisms of and language dysfunction in BECTS.
Author Correction: Ultrafast photonic reinforcement learning based on laser chaos
Authors: Naruse Makoto , Terashima Yuta , Uchida Atsushi , Kim Song-Ju
Published: April 2018

A correction to this article has been published and is linked from the HTML and PDF versions of this paper. The error has not been fixed in the paper.
The Scientific Basis and Advantage of Human Experiential Assessment in the quality control of Chinese Herbal Medicines exampling as Schisandrae Chinensis Fructus
Authors: Zhou Yongfeng , Zhang Dingkun , Li Haotian , Zhang Haizhu , Fang Jixiang , Ma Yanqin , Zhang Ping , Wang Jiabo , Xiao Xiaohe
Published: April 2018

Experiential quality assessment(EQA) is an important sensory analysis for judging herbal quality grades. Because of the high empirical utility of expert experience, the consistency, science and inheritance of such experience are continuously in dispute. To explore the scientific evidence for this subjective method, we designed a Delphi expert investigation coupled with chemical analysis to evaluate the quality of Schisandrae Chinensis Fructus (SCF). Initially, 13 experts were invited to independently evaluate the grades of 11 batches of SCF. After screening the consistency and repeatability of the evaluation results, typical samples of all quality levels were identified. Seven significant physical characters were detected; colour and size were found to be the key parameters for identifying SCF quality. Based on this correlation, a decision tree model was ultimately established and converted to a quality evaluation card. Over 80% consistency in a novice test demonstrated the technical advantages and application characteristics of the model. Further correlation analysis revealed that EQA quality grades of SCF were positively correlated to the content of polysaccharides and polyphenols, while negatively correlated to the content of lignans. Biological activities were also approving it. In summary, our study proves that subjective EQA is consistency, repeatability and could be inherited.
Activation of Calcium-Sensing Receptor increases intracellular calcium and decreases cAMP and mTOR in PKD1 deficient cells
Authors: Di Mise Annarita , Tamma Grazia , Ranieri Marianna , Centrone Mariangela , van den Heuvel Lambertus , Mekahli Djalila , Levtchenko Elena N. , Valenti Giovanna
Published: April 2018

Clinical and fundamental research suggest that altered calcium and cAMP signaling might be the most proximal events in ADPKD pathogenesis. Cells from ADPKD cysts have a reduced resting cytosolic calcium [Ca2+]i and increased cAMP levels. CaSR plays an essential role in regulating calcium homeostasis. Its activation is associated with [Ca2+]i increase and cAMP decrease, making CaSR a possible therapeutic target. Human conditionally immortalized Proximal Tubular Epithelial cells (ciPTEC) with stable knockdown of PKD1 (ciPTEC-PC1KD) and ciPTEC generated from an ADPKD1 patient (ciPTEC-PC1Pt) were used as experimental tools. CaSR functional expression was confirmed by studies showing that the calcimimetic NPS-R568 induced a significant increase in [Ca2+]i in ciPTEC-PC1KD and ciPTEC-PC1Pt. Resting [Ca2+]i were significantly lower in ciPTEC-PC1KD with respect to ciPTECwt, confirming calcium dysregulation. As in native cyst cells, significantly higher cAMP levels and mTOR activity were found in ciPTEC-PC1KD compared to ciPTECwt. Of note, NPS-R568 treatment significantly reduced intracellular cAMP and mTOR activity in ciPTEC-PC1KD and ciPTEC-PC1Pt. To conclude, we demonstrated that selective CaSR activation in human ciPTEC carrying PKD1 mutation increases [Ca2+]i, reduces intracellular cAMP and mTOR activity, reversing the principal dysregulations considered the most proximal events in ADPKD pathogenesis, making CaSR a possible candidate as therapeutic target.
Analysis of DNAs associated with coconut foliar decay disease implicates a unique single-stranded DNA virus representing a new taxon
Authors: Gronenborn Bruno , Randles John W. , Knierim Dennis , Barrière Quentin , Vetten H. Josef , Warthmann Norman , Cornu David , Sileye Tiata , Winter Stephan , Timchenko Tatiana
Published: April 2018

The unique ecology, pathology and undefined taxonomy of coconut foliar decay virus (CFDV), found associated with coconut foliar decay disease (CFD) in 1986, prompted analyses of old virus samples by modern methods. Rolling circle amplification and deep sequencing applied to nucleic acid extracts from virion preparations and CFD-affected palms identified twelve distinct circular DNAs, eleven of which had a size of about 1.3 kb and one of 641 nt. Mass spectrometry-based protein identification proved that a 24 kDa protein encoded by two 1.3 kb DNAs is the virus capsid protein with highest sequence similarity to that of grabloviruses (family Geminiviridae), even though CFDV particles are not geminate. The nine other 1.3 kb DNAs represent alphasatellites coding for replication initiator proteins that differ clearly from those encoded by nanovirid DNA-R. The 641 nt DNA-gamma is unique and may encode a movement protein. Three DNAs, alphasatellite CFDAR, capsid protein encoding CFDV DNA-S.1 and DNA-gamma share sequence motifs near their replication origins and were consistently present in all samples analysed. These DNAs appear to be integral components of a possibly tripartite CFDV genome, different from those of any Geminiviridae or Nanoviridae family member, implicating CFDV as representative of a new genus and family.
Strategic Design and Fabrication of Biomimetic 3D Scaffolds: Unique Architectures of Extracellular Matrices for Enhanced Adipogenesis and Soft Tissue Reconstruction
Authors: Unnithan Afeesh Rajan , Sasikala Arathyram Ramachandra Kurup , Thomas Shalom Sara , Nejad Amin Ghavami , Cha Youn Soo , Park Chan Hee , Kim Cheol Sang
Published: April 2018

The higher rate of soft tissue impairment due to lumpectomy or other trauma greatly requires the restoration of the irreversibly lost subcutaneous adipose tissues. The nanofibers fabricated by conventional electrospinning provide only a superficial porous structure due to its sheet like 2D structure and thereby hinder the cell infiltration and differentiation throughout the scaffolds. Thus we developed a novel electrospun 3D membrane using the zwitterionic poly (carboxybetaine-co-methyl methacrylate) co-polymer (CMMA) through electrostatic repulsion based electrospinning for soft tissue engineering. The inherent charges in the CMMA will aid the nanofiber to directly transform into a semiconductor and thereby transfer the immense static electricity from the grounded collector and will impart greater fluffiness to the scaffolds. The results suggest that the fabricated 3D nanofiber (CMMA 3NF) scaffolds possess nanofibers with larger inter connected pores and less dense structure compared to the conventional 2D scaffolds. The CMMA 3NF exhibits significant cues of soft tissue engineering such as enhanced biocompatibility as well as the faster regeneration of cells. Moreover the fabricated 3D scaffolds greatly assist the cells to develop into its stereoscopic topographies with an enhanced adipogenic property.
Non-uniform weighting of local motion inputs underlies dendritic computation in the fly visual system
Authors: Dan Ohad , Hopp Elizabeth , Borst Alexander , Segev Idan
Published: April 2018

The fly visual system offers a unique opportunity to explore computations performed by single neurons. Two previous studies characterized, in vivo, the receptive field (RF) of the vertical system (VS) cells of the blowfly (calliphora vicina), both intracellularly in the axon, and, independently using Ca2+ imaging, in hundreds of distal dendritic branchlets. We integrated this information into detailed passive cable and compartmental models of 3D reconstructed VS cells. Within a given VS cell type, the transfer resistance (TR) from different branchlets to the axon differs substantially, suggesting that they contribute unequally to the shaping of the axonal RF. Weighting the local RFs of all dendritic branchlets by their respective TR yielded a faithful reproduction of the axonal RF. The model also predicted that the various dendritic branchlets are electrically decoupled from each other, thus acting as independent local functional subunits. The study suggests that single neurons in the fly visual system filter dendritic noise and compute the weighted average of their inputs.
Greater mindful eating practice is associated with better reversal learning
Authors: Janssen Lieneke K. , Duif Iris , van Loon Ilke , de Vries Jeanne H. M. , Speckens Anne E. M. , Cools Roshan , Aarts Esther
Published: April 2018

Mindfulness-based interventions are thought to reduce compulsive behavior such as overeating by promoting behavioral flexibility. Here the main aim was to provide support for mindfulness-mediated improvements in reversal learning, a direct measure of behavioral flexibility. We investigated whether an 8-week mindful eating intervention improved outcome-based reversal learning relative to an educational cooking (i.e., active control) intervention in a non-clinical population. Sixty-five healthy participants with a wide BMI range (19–35 kg/m2), who were motivated to change their eating habits, performed a deterministic reversal learning task that enabled the investigation of reward- and punishment-based reversal learning at baseline and following the intervention. No group differences in reversal learning were observed. However, time invested in the mindful eating, but not the educational cooking intervention correlated positively with changes in reversal learning, in a manner independent of outcome valence. These findings suggest that greater amount of mindfulness practice can lead to increased behavioral flexibility, which, in turn, might help overcome compulsive eating in clinical populations.
Plac1 Is a Key Regulator of the Inflammatory Response and Immune Tolerance In Mammary Tumorigenesis
Authors: Yuan Hongyan , Wang Xiaoyi , Shi Chunmei , Jin Lu , Hu Jianxia , Zhang Alston , Li James , Vijayendra Nairuthya , Doodala Venkata , Weiss Spencer , Tang Yong , Weiner Louis M. , Glazer Robert I.
Published: April 2018

Plac1 is an X-linked trophoblast gene expressed at high levels in the placenta, but not in adult somatic tissues other than the testis. Plac1 however is re-expressed in several solid tumors and in most human cancer cell lines. To explore the role of Plac1 in cancer progression, Plac1 was reduced by RNA interference in EO771 mammary carcinoma cells. EO771 “knockdown” (KD) resulted in 50% reduction in proliferationin vitroand impaired tumor growth in syngeneic mice; however, tumor growth in SCID mice was equivalent to tumor cells expressing a non-silencing control RNA, suggesting that Plac1 regulated adaptive immunity. Gene expression profiling of Plac1 KD cells indicated reduction in several inflammatory and immune factors, including Cxcl1, Ccl5, Ly6a/Sca-1, Ly6c and Lif. Treatment of mice engrafted with wild-type EO771 cells with a Cxcr2 antagonist impaired tumor growth, reduced myeloid-derived suppressor cells and regulatory T cells, while increasing macrophages, dendritic cells, NK cells and the penetration of CD8+ T cells into the tumor bed. Cxcl1 KD phenocopied the effects of Plac1 KD on tumor growth, and overexpression of Cxcl1 partially rescued Plac1 KD cells. These results reveal that Plac1 modulates a tolerogenic tumor microenvironment in part by modulating the chemokine axis.
Example-Based Super-Resolution Fluorescence Microscopy
Authors: Jia Shu , Han Boran , Kutz J. Nathan
Published: April 2018

Capturing biological dynamics with high spatiotemporal resolution demands the advancement in imaging technologies. Super-resolution fluorescence microscopy offers spatial resolution surpassing the diffraction limit to resolve near-molecular-level details. While various strategies have been reported to improve the temporal resolution of super-resolution imaging, all super-resolution techniques are still fundamentally limited by the trade-off associated with the longer image acquisition time that is needed to achieve higher spatial information. Here, we demonstrated an example-based, computational method that aims to obtain super-resolution images using conventional imaging without increasing the imaging time. With a low-resolution image input, the method provides an estimate of its super-resolution image based on an example database that contains super- and low-resolution image pairs of biological structures of interest. The computational imaging of cellular microtubules agrees approximately with the experimental super-resolution STORM results. This new approach may offer potential improvements in temporal resolution for experimental super-resolution fluorescence microscopy and provide a new path for large-data aided biomedical imaging.
A death pheromone, oleic acid, triggers hygienic behavior in honey bees (Apis mellifera L.)
Authors: McAfee Alison , Chapman Abigail , Iovinella Immacolata , Gallagher-Kurtzke Ylonna , Collins Troy F. , Higo Heather , Madilao Lufiani L. , Pelosi Paolo , Foster Leonard J.
Published: April 2018

Eusocial insects live in teeming societies with thousands of their kin. In this crowded environment, workers combat disease by removing or burying their dead or diseased nestmates. For honey bees, we found that hygienic brood-removal behavior is triggered by two odorants – β-ocimene and oleic acid – which are released from brood upon freeze-killing. β-ocimene is a co-opted pheromone that normally signals larval food-begging, whereas oleic acid is a conserved necromone across arthropod taxa. Interestingly, the odorant blend can induce hygienic behavior more consistently than either odorant alone. We suggest that the volatile β-ocimene flags hygienic workers’ attention, while oleic acid is the death cue, triggering removal. Bees with high hygienicity detect and remove brood with these odorants faster than bees with low hygienicity, and both molecules are strong ligands for hygienic behavior-associated odorant binding proteins (OBP16 and OBP18). Odorants that induce low levels of hygienic behavior, however, are weak ligands for these OBPs. We are therefore beginning to paint a picture of the molecular mechanism behind this complex behavior, using odorants associated with freeze-killed brood as a model.
Variability of the Indonesian Throughflow in the Makassar Strait over the Last 30 ka
Authors: Fan Weijia , Jian Zhimin , Chu Zhihui , Dang Haowen , Wang Yue , Bassinot Franck , Han Xiqiu , Bian Yeping
Published: April 2018

The hydrological characteristics, including temperatures and salinities, of the upper water over the last 30 ka from two sites connected by the Indonesian Throughflow (ITF) across the Makassar Strait are reconstructed and compared. The thermocline hydrological gradient in the strait was larger during 13.4~19 ka BP and 24.2~27 ka BP than that in the Holocene. The weakened ITF during those periods in the last glacial period, corresponding to the decreased trade wind stress under an El Niño-like climate mean state, likely accounts for the increased thermocline gradient. The thermocline water temperature variabilities of the two sites, in particular the highest peaks at ~7 ka BP, are different from the records of the open western Pacific. Reoccurrence of the South China Sea Throughflow and thus a decreased surface throughflow along the Makassar Strait perhaps led to a warmer peak of thermocline temperature at ~7 ka BP than at ~11 ka BP.
Improving treatment outcome assessment in a mouse tuberculosis model
Authors: Mourik Bas C. , Svensson Robin J. , de Knegt Gerjo J. , Bax Hannelore I. , Verbon Annelies , Simonsson Ulrika S. H. , de Steenwinkel Jurriaan E. M.
Published: April 2018

Preclinical treatment outcome evaluation of tuberculosis (TB) occurs primarily in mice. Current designs compare relapse rates of different regimens at selected time points, but lack information about the correlation between treatment length and treatment outcome, which is required to efficiently estimate a regimens’ treatment-shortening potential. Therefore we developed a new approach. BALB/c mice were infected with a Mycobacterium tuberculosis Beijing genotype strain and were treated with rifapentine-pyrazinamide-isoniazid-ethambutol (RpZHE), rifampicin-pyrazinamide-moxifloxacin-ethambutol (RZME) or rifampicin-pyrazinamide-moxifloxacin-isoniazid (RZMH). Treatment outcome was assessed in n = 3 mice after 9 different treatment lengths between 2–6 months. Next, we created a mathematical model that best fitted the observational data and used this for inter-regimen comparison. The observed data were best described by a sigmoidal Emax model in favor over linear or conventional Emax models. Estimating regimen-specific parameters showed significantly higher curative potentials for RZME and RpZHE compared to RZMH. In conclusion, we provide a new design for treatment outcome evaluation in a mouse TB model, which (i) provides accurate tools for assessment of the relationship between treatment length and predicted cure, (ii) allows for efficient comparison between regimens and (iii) adheres to the reduction and refinement principles of laboratory animal use.
Inter-laboratory testing of the effect of DNA blocking reagent G2 on DNA extraction from low-biomass clay samples
Authors: Jacobsen Carsten Suhr , Nielsen Tue Kjærgaard , Vester Jan Kjølhede , Stougaard Peter , Nielsen Jeppe Lund , Voriskova Jana , Winding Anne , Baldrian Petr , Liu Binbin , Frostegård Åsa , Pedersen Dorthe , Tveit Alexander Tøsdal , Svenning Mette Marianne , Tebbe Christoph C. , Øvreås Lise , Jakobsen Pia Bach , Blazewicz Steven J. , Hubablek Valerie , Bertilsson Stefan , Hansen Lars Hestbjerg , Cary S. Craig , Holben William E. , Ekelund Flemming , Bælum Jacob
Published: April 2018

Here we show that a commercial blocking reagent (G2) based on modified eukaryotic DNA significantly improved DNA extraction efficiency. We subjected G2 to an inter-laboratory testing, where DNA was extracted from the same clay subsoil using the same batch of kits. The inter-laboratory extraction campaign revealed large variation among the participating laboratories, but the reagent increased the number of PCR-amplified16S rRNA genes recovered from biomass naturally present in the soils by one log unit. An extensive sequencing approach demonstrated that the blocking reagent was free of contaminating DNA, and may therefore also be used in metagenomics studies that require direct sequencing.
All-Optical Reinforcement Learning In Solitonic X-Junctions
Authors: Alonzo M. , Moscatelli D. , Bastiani L. , Belardini A. , Soci C. , Fazio E.
Published: April 2018

Ethology has shown that animal groups or colonies can perform complex calculation distributing simple decision-making processes to the group members. For example ant colonies can optimize the trajectories towards the food by performing both a reinforcement (or a cancellation) of the pheromone traces and a switch from one path to another with stronger pheromone. Such ant’s processes can be implemented in a photonic hardware to reproduce stigmergic signal processing. We present innovative, completely integrated X-junctions realized using solitonic waveguides which can provide both ant’s decision-making processes. The proposed X-junctions can switch from symmetric (50/50) to asymmetric behaviors (80/20) using optical feedbacks, vanishing unused output channels or reinforcing the used ones.
Enrichment of soil organic carbon by native earthworms in a patch of tropical soil, Kerala, India: First report
Authors: Sruthi S. N. , Ramasamy E. V.
Published: April 2018

The role of earthworms in soil carbon dynamics is a recent avenue of research which is less studied in India. Three plots of 1 m3 size were laid in Jeevaka live laboratory (JLL)- a biodiversity rich area within the University campus. A control plot (CP) of same dimension was maintained outside JLL. Out of three plots within JLL, one was operated with native earthworm Perionyx ceylanensisMichaelson (100 numbers), water and cattle dung as feed (Jeevaka test plot- JT) and fenced with nylon mesh. Remaining two plots were operated as controls within JLL (JC1 and JC2). JC1 (Jeevaka control 1) was provided with cattle dung and water, while JC2 and CP (outside JLL) were operated without any supplements. Throughout the experiment native earthworm species have maintained their dominancy in all plots except CP where no earthworms were observed. At the end of a year-long study, JC1 with maximum diversity of earthworms showed better soil organic carbon (SOC) and particulate organic carbon (POC)-which is relatively a stable form of SOC. Overall findings indicate better the diversity of earthworms better is the carbon storage in the soil.
Improvement of Storage Medium for Cultured Human Retinal Pigment Epithelial Cells Using Factorial Design
Authors: Pasovic L. , Utheim T. P. , Reppe S. , Khan A. Z. , Jackson C. J. , Thiede B. , Berg J. P. , Messelt E. B. , Eidet J. R.
Published: April 2018

Storage of human retinal pigment epithelium (hRPE) can contribute to the advancement of cell-based RPE replacement therapies. The present study aimed to improve the quality of stored hRPE cultures by identifying storage medium additives that, alone or in combination, contribute to enhancing cell viability while preserving morphology and phenotype. hRPE cells were cultured in the presence of the silk protein sericin until pigmentation. Cells were then stored for 10 days in storage medium plus sericin and either one of 46 different additives. Individual effects of each additive on cell viability were assessed using epifluorescence microscopy. Factorial design identified promising additive combinations by extrapolating their individual effects. Supplementing the storage medium with sericin combined with adenosine, L-ascorbic acid and allopurinol resulted in the highest cell viability (98.6 ± 0.5%) after storage for three days, as measured by epifluorescence microscopy. Flow cytometry validated the findings. Proteomics identified 61 upregulated and 65 downregulated proteins in this storage group compared to the unstored control. Transmission electron microscopy demonstrated the presence of melanosomes after storage in the optimized medium. We conclude that the combination of adenosine, L-ascorbic acid, allopurinol and sericin in minimal essential medium preserves RPE pigmentation while maintaining cell viability during storage.
Discretized Theta-Rhythm Perception Revealed by Moving Stimuli
Authors: Nakayama Ryohei , Motoyoshi Isamu , Sato Takao
Published: April 2018

Despite the subjective continuity of perception over time, increasing evidence suggests that the human nervous system samples sensory information periodically, a finding strongly exemplified by discretized perception in the alpha-rhythm frequency band. More recently, studies have revealed a theta-band cyclic process that manifests itself as periodical fluctuations in behavioral performance. Here, we used a simple stimulus to demonstrate that the theta-cyclic system can produce a vivid experience of slow discrete visual sampling: a Gabor texture pattern appears as a series of flickering snapshots if its spatial window moves continuously over a carrier grating that remains still or drifts continuously in the opposite direction. While the perceptual magnitude of this illusory saltation varied with the speed difference between grating and window components in head-centered coordinates, the perceived rhythm of saltation remained nearly constant (3–8 Hz) over a wide range of stimulus parameters. Results provide further evidence that the slow cyclic neural processes play a critical role not only in attentional task performance but also in conscious perception.
Plasmodium falciparum strains spontaneously switch invasion phenotype in suspension culture
Authors: Awandare Gordon A. , Nyarko Prince B. , Aniweh Yaw , Ayivor-Djanie Reuben , Stoute José A.
Published: April 2018

The extensive redundancy in the use of invasion ligands by Plasmodium falciparum, and its unique ability to switch between invasion pathways have hampered vaccine development. P. falciparum strains Dd2 and W2mef have been shown to change from sialic acid (SA)-dependent to SA-independent phenotypes when selected on neuraminidase-treated erythrocytes. Following an observation of increasing ability of Dd2 to invade neuraminidase-treated cells when cultured for several weeks, we systematically investigated this phenomenon by comparing invasion phenotypes of Dd2, W2mef and 3D7 strains of P. falciparum that were cultured with gentle shaking (Suspended) or under static (Static) conditions. While Static Dd2 and W2mef remained SA-dependent for the entire duration of the investigation, Suspended parasites spontaneously and progressively switched to SA-independent phenotype from week 2 onwards. Furthermore, returning Suspended cultures to Static conditions led to a gradual reversal to SA-dependent phenotype. The switch to SA-independent phenotype was accompanied by upregulation of the key invasion ligand, reticulocyte-binding homologue 4 (RH4), and the increased invasion was inhibited by antibodies to the RH4 receptor, CR1. Our data demonstrates a novel mechanism for inducing the switching of invasion pathways in P. falciparum parasites and may provide clues for understanding the mechanisms involved.
Cycle oxidation behavior and anti-oxidation mechanism of hot-dipped aluminum coating on TiBw/Ti6Al4V composites with network microstructure
Authors: Li X. T. , Huang L. J. , Wei S. L. , An Q. , Cui X. P. , Geng L.
Published: April 2018

Controlled and compacted TiAl3 coating was successfully fabricated on the network structured TiBw/Ti6Al4V composites by hot-dipping aluminum and subsequent interdiffusion treatment. The network structure of the composites was inherited to the TiAl3 coating, which effectively reduces the thermal stress and avoids the cracks appeared in the coating. Moreover, TiB reinforcements could pin the TiAl3 coating which can effectively improve the bonding strength between the coating and composite substrate. The cycle oxidation behavior of the network structured coating on 873 K, 973 K and 1073 K for 100 h were investigated. The results showed the coating can remarkably improve the high temperature oxidation resistance of the TiBw/Ti6Al4V composites. The network structure was also inherited to the Al2O3 oxide scale, which effectively decreases the tendency of cracking even spalling about the oxide scale. Certainly, no crack was observed in the coating after long-term oxidation due to the division effect of network structured coating and pinning effect of TiB reinforcements. Interfacial reaction between the coating and the composite substrate occurred and a bilayer structure of TiAl/TiAl2 formed next to the substrate after oxidation at 973 K and 1073 K. The anti-oxidation mechanism of the network structured coating was also discussed.
All-solid-state high-energy planar hybrid micro-supercapacitors based on 2D VN nanosheets and Co(OH)2 nanoflowers
Authors: Wang Sen , Wu Zhong-Shuai , Zhou Feng , Shi Xiaoyu , Zheng Shuanghao , Qin Jieqiong , Xiao Han , Sun Chenglin , Bao Xinhe
Published: April 2018

Planar micro-supercapacitors are recognized as one of the most competitive on-chip power sources for integrated electronics. However, most reported symmetric micro-supercapacitors suffer from low energy density. Herein, we demonstrate the facile mask-assisted fabrication of new-type all-solid-state planar hybrid micro-supercapacitors with high energy density, based on interdigital patterned films of porous vanadium nitride nanosheets as negative electrode and Co(OH)2 nanoflowers as positive electrode. The resultant planar hybrid micro-supercapacitors display high areal capacitance of 21 mF cm−2 and volumetric capacitance of 39.7 F cm−3 at 0.2 mA cm−2, and exhibit remarkable energy density of 12.4 mWh cm−3 and power density of 1750 mW cm−3, based on the whole device, outperforming most reported planar hybrid micro-supercapacitors and planar asymmetric micro-supercapacitors. Moreover, all-solid-state planar hybrid micro-supercapacitors show excellent cyclability with 84% capacitance retention after 10000 cycles, and exceptionally mechanical flexibility. Therefore, our proposed strategy for the simplified construction of planar hybrid micro-supercapacitors will offer numerous opportunities of utilizing graphene and other 2D nanosheets for high-energy microscale supercapacitors for electronics.