bluuebunny/crossref_metadata_2025 huggingface dataset:
The Role of the Home Learning Environment on Early Cognitive and Non-Cognitive Outcomes in Math and Reading
Authors: Vanbecelaere Stefanie , Matsuyama Kanako , Reynvoet Bert , Depaepe Fien
Published: December 2021

The home learning environment (HLE) has been considered to contribute to children’s early math and reading development. Previous studies examined the HLE by examining the influence of parent-child math and reading activities on math and reading outcomes, however also parents’ own perceptions of math and reading and their math anxiety (MA) and reading anxiety (RA) contribute to the HLE but the latter factors have been scarcely explored. The aim of this study was to provide a more holistic view of the HLE and its relations with children’s cognitive and non-cognitive outcomes in math and reading at the start of primary school. This paper examined the relations within the HLE, and the relations between the HLE and children’s early math and reading outcomes. Participants were 301 first-grade children and their parents. The HLE was measured by the parent questionnaire. Children’s digit comparison, number line estimation, letter knowledge and phonological awareness skills were measured as well as their math and reading anxiety levels. The results demonstrated a significant association between parents’ perceptions and their anxiety towards math and reading. No significant associations were found between parents’ perceptions towards math and the frequency of home numeracy activities, whereas significant relations were found in the domain of reading. Socioeconomic status was found to provide a unique contribution in children’s digit comparison and math anxiety, while no significant relations were observed between other HLE factors and children’s outcomes. The current study suggests the importance of including parents’ perceptions and feelings to explore the dynamics of the HLE and its impact on children’s math and reading outcomes.
Construction and Application of Flocculation and Destability System of Biodrill-A Drilling Fluid in Bohai Oilfield
Authors: Ma Yingwen , Zhang Yuchen , Liu Yang , Yue Ming , Wang Dongsen , Zhang Xuemei
Published: December 2021

To protect the marine ecological environment of Bohai Bay, the waste drilling fluid in Bohai oilfield have to be treated. In the light of the composition characteristics of Biodrill-A drilling fluid, the compounding method of the inorganic–organic flocculants was adopted to assist the flocculation and solid–fluid separation of Biodrill-A drilling fluid. Through the orthogonal test design, the main factors impacting the flocculation effect on Biodrill-A drilling fluid were found to the concentration of inorganic flocculant CaCl2 and the flocculation pH value. The optimal flocculation treatment was further obtained through single-factor optimization. Specifically, when the inorganic flocculant CaCl2 concentration was 0.9 w/v%, the organic flocculant concentration was 0.01 w/v%, the flocculation pH was 8, and the flocculation time was 7 min. Eventually, the final dewatering rate could reach 84.02%. In the optimized compound flocculants, the inorganic flocculant CaCl2 reduced the zeta potential of clay particles by electric neutralization to decrease the repulsion among particles, and the organic one could absorb and wrap the clay particles through bridging curling and electric neutralization after flocculation destabilization. Both inorganic and organic flocculants facilitated the large flocs and particles of clay particles. The field test showed that the inorganic–organic flocculants were suitable for the on-line flocculation treatment process based on centrifugal machine. The waste drilling fluid was reduced by 82%, and the water content of the separated solid phase was as low as 25.7%.
Validation of Doppler Temperature Coefficients and Assembly Power Distribution for the Lattice Code KYLIN V2.0.
Authors: Jichong Lei , Jinsen Xie , Zhenping Chen , Tao Yu , Chao Yang , Bin Zhang , Chen Zhao , Xiangyang Li , Jiebo Wu , Huajian Zhang , Nianbiao Deng
Published: December 2021

This work is interested in verifying and analyzing the advanced neutronics lattice code KYLIN V2.0. Assembly calculations are an integral part of the two-step calculation for core design, and their accuracy directly affects the results of the core physics calculations. In this paper, we use the Doppler coefficient numerical benchmark problem and CPR1000 AFA-3G fuel assemblies to verify and analyze the advanced neutronics lattice code KYLIN V2.0 developed by the Nuclear Power Institute of China. The analysis results show that the Doppler coefficients calculated by KYLIN V2.0 are in good agreement with the results of other well-known nuclear engineering design software in the world; the power distributions of AFA-3G fuel assemblies are in good agreement with the results of the RMC calculations, it’s error distribution is in accordance with the normal distribution. It shows that KYLIN V2.0 has high calculation accuracy and meets the engineering design requirements.
Effect of Tube Expansion on Heat Transfer and Pressure Drop Characteristics During Condensation in Micro-Fin Tubes
Authors: Liu Na , Zhao Qian , Lan Zhixiang
Published: December 2021

Despite of the large number of research dedicated to condensation heat transfer and pressure drop characteristics in pristine micro-fin tubes, experimental investigation on effects of tube expansion have not been reported in the open literature. The paper reports measured cross-sectional dimensions, condensation heat transfer and pressure drop data of R1234ze(E) in pristine (5.10 mm OD) and expanded (5.26 mm OD) micro-fin tubes with mass fluxes from 100 to 300 kg/(m2·s). Effects of mass flux, vapor quality and tube expansion on the heat transfer coefficients and friction pressure gradients were investigated in the study. When the mass flux is 100 kg/(m2·s), the heat transfer coefficient and pressure drop of R1234ze(E) decrease after tube expansion. However, when the mass fluxes are 200 and 300 kg/(m2·s), tube expansion effects on the heat transfer coefficient and pressure drop are not notable. In addition, the experimental results are analyzed based on the existing condensation heat transfer and pressure drop correlations.
A Morphological and Histological Investigation of Imperfect Lungfish Fin Regeneration
Authors: Bothe Vivien , Schneider Igor , Fröbisch Nadia B.
Published: December 2021

Regeneration, the replacement of body parts in a living animal, has excited scientists for centuries and our knowledge of vertebrate appendage regeneration has increased significantly over the past decades. While the ability of amniotes to regenerate body parts is very limited, members of other vertebrate clades have been shown to have rather high regenerative capacities. Among tetrapods (four-limbed vertebrates), only salamanders show unparalleled capacities of epimorphic tissue regeneration including replacement of organ and body parts in an apparently perfect fashion. The closest living relatives of Tetrapoda, the lungfish, show regenerative abilities that are comparable to those of salamanders and recent studies suggest that these high regenerative capacities may indeed be ancestral for bony fish (osteichthyans) including tetrapods. While great progress has been made in recent years in understanding the cellular and molecular mechanisms deployed during appendage regeneration, comparatively few studies have investigated gross morphological and histological features of regenerated fins and limbs. Likewise, rather little is known about how fin regeneration compares morphologically to salamander limb regeneration. In this study, we investigated the morphology and histology of regenerated fins in all three modern lungfish families. Data from histological serial sections, 3D reconstructions, and x-ray microtomography scans were analyzed to assess morphological features, quality and pathologies in lungfish fin regenerates. We found several anomalies resulting from imperfect regeneration in regenerated fins in all investigated lungfish species, including fusion of skeletal elements, additional or fewer elements, and distal branching. The similarity of patterns in regeneration abnormalities compared to salamander limb regeneration lends further support to the hypothesis that high regenerative capacities are plesiomorphic for sarcopterygians.
Impacts of Warming on Reciprocal Subsidies Between Aquatic and Terrestrial Ecosystems
Authors: O’Gorman Eoin J. , Chemshirova Irina , McLaughlin Órla B. , Stewart Rebecca I. A.
Published: December 2021

Cross-ecosystem subsidies are important as their recipients often rely on them to supplementin situresource availability. Global warming has the potential to alter the quality and quantity of these subsidies, but our knowledge of these effects is currently limited. Here, we quantified the biomass and diversity of the invertebrates exchanged between freshwater streams and terrestrial grasslands in a natural warming experiment in Iceland. We sampled invertebrates emerging from the streams, those landing on the water surface, ground-dwelling invertebrates falling into the streams, and those drifting through the streams. Emerging invertebrate biomass or diversity did not change with increasing temperature, suggesting no effect of warming on aquatic subsidies to the terrestrial environment over the 1-month duration of the study. The biomass and diversity of aerial invertebrates of terrestrial origin landing on the streams increased with temperature, underpinned by increasing abundance and species richness, indicating that the greater productivity of the warmer streams may attract more foraging insects. The biomass of ground-dwelling invertebrates falling into the streams also increased with temperature, underpinned by increasing body mass and species evenness, suggesting that soil warming leads to terrestrial communities dominated by larger, more mobile organisms, and thus more in-fall to the streams. The biomass and diversity of terrestrial invertebrates in the drift decreased with temperature, however, underpinned by decreasing abundance and species richness, reflecting upstream consumption due to the higher energetic demands of aquatic consumers in warmer environments. These results highlight the potential for asynchronous responses to warming for reciprocal subsidies between aquatic and terrestrial environments and the importance of further research on warming impacts at the interface of these interdependent ecosystems.
Warming and Labile Substrate Addition Alter Enzyme Activities and Composition of Soil Organic Carbon
Authors: Tamura Mioko , Suseela Vidya
Published: December 2021

Warming can increase the efflux of carbon dioxide (CO2) from soils and can potentially feedback to climate change. In addition to warming, the input of labile carbon can enhance the microbial activity by stimulating the co-metabolism of recalcitrant soil organic matter (SOM). This is particularly true with SOM under invaded ecosystems where elevated CO2and warming may increase the biomass of invasive species resulting in higher addition of labile substrates. We hypothesized that the input of labile carbon would instigate a greater soil organic carbon (SOC) loss with warming compared to the ambient temperature. We investigated this by incubating soils collected from a native pine (Pinus taeda) forest to which labile carbon from the invasive species kudzu (Pueraria lobata) was added. We evaluated the microbial extracellular enzyme activity, molecular composition of SOC and the temperature sensitivity of soil CO2efflux under warming and labile carbon addition. After 14 months of soil incubation, the addition of labile C through kudzu extract increased the activity of β-1,4-glucosidase compared with the control. However, the activity of N-acetyl-β-D-glucosaminidase and fungal biomass (ergosterol) decreased with labile carbon addition. The activity of peroxidase increased with warming after 14 months of soil incubation. Although the carbon content of incubated soils did not vary with substrate and temperature treatments, the molecular composition of SOC indicated a general decrease in biopolymers such as cutin, suberin, long-chain fatty acids, and phytosterol with warming and an increasing trend of microbial-derived compounds with labile substrate addition. In soils that received an addition of labile C, the macro-aggregate stability was higher while the temperature sensitivity of soil C efflux was lower compared with the control. The increase in aggregate stability could enhance the physical protection of SOC from microbial decomposition potentially contributing to the observed pattern of temperature sensitivity. Our results suggest that warming could preferentially accelerate the decomposition of recalcitrant compounds while the addition of labile substrates could enhance microbial-derived compounds that are relatively resistant to further decomposition. Our study further emphasizes that global change factors such as plant invasion and climate change can differentially alter soil microbial activity and the composition of SOC.
Establishment of A Nomogram for Predicting the Prognosis of Soft Tissue Sarcoma Based on Seven Glycolysis-Related Gene Risk Score
Authors: Liu Yuhang , Liu Changjiang , Zhang Hao , Yi Xinzeyu , Yu Aixi
Published: December 2021

Background: Soft tissue sarcoma (STS) is a group of tumors with a low incidence and a complex type. Therefore, it is an arduous task to accurately diagnose and treat them. Glycolysis-related genes are closely related to tumor progression and metastasis. Hence, our study is dedicated to the development of risk characteristics and nomograms based on glycolysis-related genes to assess the survival possibility of patients with STS.

Methods: All data sets used in our research include gene expression data and clinical medical characteristics in the Genomic Data Commons Data Portal (National Cancer Institute) Soft Tissue Sarcoma (TCGA SARC) and GEO database, gene sequence data of corresponding non-diseased human tissues in the Genotype Tissue Expression (GTEx).Next, transcriptome data in TCGA SARC was analyzed as the training set to construct a glycolysis-related gene risk signature and nomogram, which were confirmed in external test set.

Results: We identified and verified the 7 glycolysis-related gene signature that is highly correlated with the overall survival (OS) of STS patients, which performed excellently in the evaluation of the size of AUC, and calibration curve. As well as, the results of the analysis of univariate and multivariate Cox regression demonstrated that this 7 glycolysis-related gene characteristic acts independently as an influence predictor for STS patients. Therefore, a prognostic-related nomogram combing 7 gene signature with clinical influencing features was constructed to predict OS of patients with STS in the training set that demonstrated strong predictive values for survival.

Conclusion: These results demonstrate that both glycolysis-related gene risk signature and nomogram were efficient prognostic indicators for patients with STS. These findings may contribute to make individualize clinical decisions on prognosis and treatment.
Perspectives on Genetic Research: Results From a Survey of Navajo Community Members
Authors: Claw Katrina G. , Dundas Nicolas , Parrish Michael S. , Begay Rene L. , Teller Travis L. , Garrison Nanibaa’ A. , Sage Franklin
Published: December 2021

The Navajo Nation placed a moratorium on genetic research studies in 2002, in part due to concerns about historical distrust, exploitation, limited expertise and resources, and the lack of a genetics policy. Navajo tribal leaders, scientists, and policy experts are exploring the possibility of lifting the moratorium, developing a genetic research policy, and discussing its potential health implications. This study aimed to identify the key concerns, needs, and desires of Navajo people regarding genetic research. We conducted a survey of Navajo individuals to assess knowledge of the moratorium and research, gauge interest in genetic research, and quantify appropriate genetic research topics to understand broad views and concerns. We performed descriptive statistics and tested associations between relevant categorical variables using Chi-square tests. We hypothesized that individuals with more knowledge about the moratorium and health research increased the likelihood of supporting and participating in genetic research. A total of 690 surveys from Navajo respondents were analyzed. Of these, 63% of respondents reported being unaware of the Navajo Nation’s moratorium on genetic research. There were positive associations between those who knew about the moratorium and willingness to donate biospecimens for research under certain conditions, such as community involvement, review and approval by community leaders, research on diseases affecting the community, and support for lifting the moratorium (p-values < 0.001). We found no significant differences between age, gender, religious/spiritual beliefs, or agency affiliation with knowledge levels of genetics and related topics, participation in relation to beliefs, and donation of biospecimens. Interestingly, respondents who resided off the Navajo Nation were positively associated with having knowledge of the moratorium, having heard of discussions of genetics on the Navajo Nation, and the lawsuit filed by the Havasupai Tribe. Most respondents agreed that it was very important to develop a policy that incorporates cultural knowledge (56%), is beneficial (56%), and has data sharing protections (59%) before allowing genetic research on the Navajo Nation. Overall, a large proportion of respondents (46%) were unsure about lifting the moratorium and instead wanted more genetics education to assess its potential implications. The study results can inform the direction of future guidelines and policies.
Neuroinflammation and Scarring After Spinal Cord Injury: Therapeutic Roles of MSCs on Inflammation and Glial Scar
Authors: Pang Qi-Ming , Chen Si-Yu , Xu Qi-Jing , Fu Sheng-Ping , Yang Yi-Chun , Zou Wang-Hui , Zhang Meng , Liu Juan , Wan Wei-Hong , Peng Jia-Chen , Zhang Tao
Published: December 2021

Transected axons are unable to regenerate after spinal cord injury (SCI). Glial scar is thought to be responsible for this failure. Regulating the formation of glial scar post-SCI may contribute to axonal regrow. Over the past few decades, studies have found that the interaction between immune cells at the damaged site results in a robust and persistent inflammatory response. Current therapy strategies focus primarily on the inhibition of subacute and chronic neuroinflammation after the acute inflammatory response was executed. Growing evidences have documented that mesenchymal stem cells (MSCs) engraftment can be served as a promising cell therapy for SCI. Numerous studies have shown that MSCs transplantation can inhibit the excessive glial scar formation as well as inflammatory response, thereby facilitating the anatomical and functional recovery. Here, we will review the effects of inflammatory response and glial scar formation in spinal cord injury and repair. The role of MSCs in regulating neuroinflammation and glial scar formation after SCI will be reviewed as well.
T Helper Cell Subsets in the Pleural Fluid of Tuberculous Patients Differentiate Patients With Non-Tuberculous Pleural Effusions
Authors: Roofchayee Neda Dalil , Adcock Ian M. , Marjani Majid , Dezfuli Neda K. , Varahram Mohammad , Garssen Johan , Mortaz Esmaeil
Published: December 2021

Background

Tuberculous pleural effusion (TPE) is one of the most common forms of extrapulmonary tuberculosis (Tb). Patients with TPE or malignant pleural effusions (MPE) frequently have a similar lymphocytic pleural fluid profile. Since the etiology of PE in various diseases is different, identifying the cellular components may provide diagnostic clues for understanding the pathogenesis.

Objective

We determined the frequency of T helper (Th) subtypes in the PEs for differentiation of Tb and non-Tb patients.

Methods

Thirty patients with TPE, 30 patients with MPE, 14 patients with empyema (EMP), and 14 patients with parapneumonic effusion (PPE) were enrolled between December 2018 and December 2019. Five-milliliter fresh PE in tubes containing heparin as an anticoagulant was obtained from patients. The frequencies of CD4+IL-9+, CD4+IL-22+, CD+IL-17+, and regulatory T-cells CD4+CD25+ FOXP3+ (Treg) were determined by flow cytometry.

Results

Treg cells have a lower frequency in TPE patients [4.2 (0.362–17.24)] compared with non-TPE patients [26.3 (3.349–76.93, p < 0.0001)]. The frequency of CD4+IL-9+ cells was significantly lower in TPE patients [3.67 (0.87–47.83)] compared with non-TPE groups [13.05 (1.67–61.45), p < 0.0001]. On the contrary, there was no significant difference in the frequency of CD4+IL-17+ and CD4+IL-22+ cells between TPE and non-TPE patients (p = 0.906 and p = 0.2188). Receiver-operator curve (ROC) analysis demonstrated that CD4+CD25+FOXP3+ T cells [optimal cutoff value = 13.6 (%), sensitivity 90%, specificity 75.86%] could be considered as predictor for TPE. However, adenosine deaminase [cutoff value 27.5 (IU/l), sensitivity 90%, specificity 96.5%] levels had an even greater predictive capacity.

Conclusion

ADA, Treg cells, and CD4+IL-9+ cells may differentiate TPE from non-TPE patients. However, these results need validation in an independent large cohort.
Lyssaviruses and the Fatal Encephalitic Disease Rabies
Authors: Scott Terence Peter , Nel Louis Hendrik
Published: December 2021

Lyssaviruses cause the disease rabies, which is a fatal encephalitic disease resulting in approximately 59,000 human deaths annually. The prototype species, rabies lyssavirus, is the most prevalent of all lyssaviruses and poses the greatest public health threat. In Africa, six confirmed and one putative species of lyssavirus have been identified. Rabies lyssavirus remains endemic throughout mainland Africa, where the domestic dog is the primary reservoir – resulting in the highest per capita death rate from rabies globally. Rabies is typically transmitted through the injection of virus-laden saliva through a bite or scratch from an infected animal. Due to the inhibition of specific immune responses by multifunctional viral proteins, the virus usually replicates at low levels in the muscle tissue and subsequently enters the peripheral nervous system at the neuromuscular junction. Pathogenic rabies lyssavirus strains inhibit innate immune signaling and induce cellular apoptosis as the virus progresses to the central nervous system and brain using viral protein facilitated retrograde axonal transport. Rabies manifests in two different forms - the encephalitic and the paralytic form - with differing clinical manifestations and survival times. Disease symptoms are thought to be due mitochondrial dysfunction, rather than neuronal apoptosis. While much is known about rabies, there remain many gaps in knowledge about the neuropathology of the disease. It should be emphasized however, that rabies is vaccine preventable and dog-mediated human rabies has been eliminated in various countries. The global elimination of dog-mediated human rabies in the foreseeable future is therefore an entirely feasible goal.
Controls of Wind-Driven Jet on the Distribution of Pelagic Cnidarians in the Midwestern South China Sea
Authors: Ge Ruping , Chen Hongju , Li Ling , Liu Guangxing , Huang Bangqin , Wang Lisha , Zhuang Yunyun , Liu Xin
Published: December 2021

The coastal water transported by the combined action of southwest wind jet and anticyclonic eddy substantially influences the biological processes in the midwestern South China Sea. However, how the wind-driven jet affects the zooplankton community remains unclear. In this study, the species number, abundance, and vertical distribution of medusae were investigated in the wind-driven jet (WJR) and non-wind-driven jet regions (NWJR). The low-salinity and nutrient-rich coastal water substantially influenced species composition, abundance, and vertical distribution of medusae in the WJR. The species number of the meroplanktonic hydromedusae in the WJR was approximately twice that in the NWJR due to the horizontal transport of wind-driven jets. The abundances of holoplanktonic hydromedusae in WJR were 38.2 ± 9.3 ind⋅m–3, which were thrice of that in the NWJR regions, caused by the abundant diet in the WJR. Additionally, only the abundance of medusae above the thermocline was affected by the coastal water in WJR, while these showed no significant difference below the thermocline between the WJR and the NWJR. Generalized additive model analyses suggested that the diet was the most important factor affecting the abundance of the holoplanktonic hydromedusae and siphonophore, whereas meroplanktonic hydromedusae were influenced by the combination of temperature, salinity, and diet.
Combining Knowledge Systems Helps Understand the Spatial Dynamics of Data-Limited Small-Scale Fisheries Systems in Brazil: A Methods Analysis
Authors: Borges Rebecca , Eyzaguirre Indira A. L. , Sá Leitão Barboza Roberta , Boos Karin , Glaser Marion , Lopes Priscila F. M.
Published: December 2021

Mangrove habitats provide nursery, shelter, and feeding sites for many economically relevant fish, and invertebrates, such as crabs. Given the highly artisanal character and the patchy spatial distribution of small-scale fishing in mangroves, there is often little data available to inform management, potentially threatening the sustainability of this livelihood-supporting activity. This study assesses the combination of different data collection methods and of including published data in the analysis of the spatial dynamics. We examine crab fisheries in two sustainable-use protected areas as a case study to understand use patterns as indicated by a specific combination of mapping methods. Mangrove crab fishing grounds were mapped by overlaying crab gatherers’ tracked routes with maps produced during participatory-mapping-centered interviews. Information from the literature was used to spatialize crab carapace width and relate it to distance traveled by fishers. Results show that crabs tended to be larger if caught farther from the villages where fishers live. In terms of collection methods, even though GPS tracking is relatively time- and resource-consuming, incorporating some GPS tracking into participatory mapping helps overcome a downside of this type of mapping (e.g., lack of geographical precision) and identifies information that can be accessed through participatory techniques. This highlights the importance of linking different approaches in order to understand small-scale fisheries spatial dynamics.
Transcriptome Analysis of Gills Provides Insights Into Translation Changes Under Hypoxic Stress and Reoxygenation in Golden Pompano, Trachinotus ovatus (Linnaeus 1758)
Authors: San Lize , Liu Baosuo , Liu Bo , Guo Huayang , Guo Liang , Zhang Nan , Zhu Kecheng , Jiang Shigui , Zhang Dianchang
Published: December 2021

Golden pompano (Trachinotus ovatus) is one of the most economically critical marine fish in South China. Low oxygen stress has resulted in substantial economic losses to the aquaculture of T. ovatus. However, the molecular responses of fish gills to hypoxia challenge remain unclear. To understand the mechanism underlying adaption to hypoxia, we analyzed the transcriptome of T. ovatus gills in response to hypoxic stress in the normal oxygen group, hypoxic group, and hypoxia treatment after oxygen recovery group. This study found that hypoxia for 8 h was the critical time of hypoxic stress and corresponded to the largest number of differentially expressed genes. After hypoxic stress, genes for chemokines, chemokine receptors, interleukins, complement factors, and other cytokines were significantly downregulated, which may be why fish are vulnerable to pathogen infection in a hypoxic environment. According to a Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analysis, many downregulated genes were significantly enriched in the steroid biosynthesis, focal adhesion, and the extracellular matrix (ECM)-receptor interaction signal pathways, which affected cell signal transduction, adhesion, and apoptosis. Compared with the hypoxic group, the amounts of upregulated genes related to phagocytosis and protein degradation were upregulated in the dissolved oxygen recovery group. These results indicated that after the recovery of dissolved oxygen, the fish body repaired the stress-induced damage by rapidly removing misfolded proteins. These findings provide a better understanding of the hypoxia response mechanism of fish and represent a useful resource for the genetic breeding of T. ovatus.
Low Dose-Rate Irradiation of Gamma-Rays-Induced Cytotoxic and Genotoxic Alterations in Peripheral Erythrocytes of p53-Deficient Medaka (Oryzias latipes)
Authors: Sayed Alaa El-Din H. , Nagata Kento , Nakazawa Takuya , Mitani Hiroshi , Kobayashi Junya , Oda Shoji
Published: December 2021

Morphological alterations and nuclear abnormalities in fish erythrocytes have been used in many studies as bioindicators of environmental mutagens including ionizing radiation. In this study, adult Japanese medaka (Oryzias latipes) were irradiated with gamma rays at a low dose rate (9.92 μGy/min) for 7 days, giving a total dose of 100 mGy; and morphological alterations, nuclear abnormalities, and apoptotic cell death induced in peripheral erythrocytes were investigated 8 h and 7 days after the end of the irradiation. A variety of abnormalities, such as tear-drop cell, crenated cell, acanthocyte, sickled cell, micronucleated cell, eccentric nucleus, notched nucleus, and schistocyte, were induced in the peripheral erythrocytes of the wild-type fish, and a less number of abnormalities and apoptotic cell death were induced in the p53-deficient fish. These results indicate that low dose-rate chronic irradiation of gamma rays can induce cytotoxic and genotoxic effects in the peripheral erythrocytes of medaka, and p53-deficient medaka are tolerant to the gamma-ray irradiation than the wild type on the surface.
Assimilation of Particular Organic Matter and Dissolved Organic or Inorganic Compounds by Cribroelphidium selseyense (Foraminifera)
Authors: Lintner Michael , Lintner Bianca , Wanek Wolfgang , Schmidt Sarina , Keul Nina , Heinz Petra
Published: December 2021

Marine carbon and nitrogen processing through microorganisms’ metabolism is an important aspect of the global element cycles. For that purpose, we used foraminifera to analyze the element turnover with different algae food sources. In the Baltic Sea, benthic foraminifera are quite common and therefore it is important to understand their metabolism. Especially, Cribroelphidium selseyense, also occurring in the Baltic Sea, has often been used for laboratory feeding experiments to test their effect on carbon or nitrogen turnover. Therefore, foraminifera were collected from the Kiel Fjord and fed with six different algal species in two qualities (freeze-dried algae vs. fresh algae, all 13C- and 15N-labeled). Also, labeled dissolved inorganic C and N compounds and glucose were offered to the foraminifera to test direct assimilation of dissolved compounds (carbon and nitrogen) from the water column. Our experiments showed that after 15 days of incubation, there were highly significant differences in isotope labeling in foraminifera fed with fresh algae and dry algae, depending on algal species. Further, different algal species led to different 13C and 15N enrichment in the studied foraminifera, highlighting a feeding preference for one diatom species and an Eustigmatophyte. A significant carbon assimilation from HCO3– was observed after 7 days of incubation. The N assimilation from NH4+ was significantly higher than for NO3– as an inorganic N source. The uptake of glucose showed a lag phase, which was often observed during past experiments, where foraminifera were in a steady state and showed no food uptake at regular intervals. These results highlight the importance of food quality on the feeding behavior and metabolic pathways for further studies of foraminiferal nutrition and nutrient cycling.
Hyponatremia, Inflammation at Admission, and Mortality in Hospitalized COVID-19 Patients: A Prospective Cohort Study
Authors: Ayus Juan Carlos , Negri Armando Luis , Moritz Michael L. , Lee Kyung Min , Caputo Daniel , Borda Maria Elena , Go Alan S. , Eghi Carlos
Published: December 2021

Background: Systemic inflammation has been associated with severe coronavirus disease 2019 (COVID-19) disease and mortality. Hyponatremia can result from inflammation due to non-osmotic stimuli for vasopressin production.

Methods: We prospectively studied 799 patients hospitalized with COVID-19 between March 7 and November 7, 2020, at Hospital Posadas in Buenos Aires, Argentina in order to evaluate the association between hyponatremia, inflammation, and its impact on clinical outcomes. Admission biochemistries, high-sensitivity C-reactive protein (hsCRP), ferritin, patient demographics, and outcome data were recorded. Outcomes (within 30 days after symptoms) evaluated included ICU admission, mechanical ventilation, dialysis-requiring acute kidney injury (AKI), and in-hospital mortality. Length of hospital stay (in days) were evaluated using comprehensive data from the EHR.

Results: Hyponatremia (median Na = 133 mmol/L) was present on admission in 366 (45.8%). Hyponatremic patients had higher hsCRP (median 10.3 [IR 4.8–18.4] mg/dl vs. 6.6 [IR 1.6–14.0] mg/dl, p < 0.01) and ferritin levels (median 649 [IQR 492–1,168] ng/dl vs. 393 [IQR 156–1,440] ng/dl, p = 0.02) than normonatremic patients. Hyponatremia was associated with higher odds of an abnormal hsCRP (unadjusted OR 5.03, 95%CI: 2.52–10.03), and remained significant after adjustment for potential confounders (adjusted OR 4.70 [95%CI: 2.33–9.49], p < 0.01). Hyponatremic patients had increased mortality on unadjusted (HR 3.05, 95%CI: 2.14–4.34) and adjusted (HR 2.76, 95%CI:1.88–4.06) in Cox proportional hazard models. Crude 30-day survival was lower for patients with hyponatremia at admission (mean [SD] survival 22.1 [0.70] days) compared with patients who were normonatremic (mean [SD] survival 27.2 [0.40] days, p < 0.01).

Conclusion: Mild hyponatremia on admission is common, is associated with systemic inflammation and is an independent risk factor for hospital mortality.

Clinical Trial Registration:www.ClinicalTrials.gov, identifier NCT04493268.
Research Progress in the Treatment of Complications and Sequelae of COVID-19
Authors: Wang Jinpeng , Zhu Kuoyun , Xue Yuchuan , Wen Guangfu , Tao Lin
Published: December 2021

With the improvement in the understanding of COVID-19 and the widespread vaccination of COVID-19 vaccines in various countries, the epidemic will be brought under control soon. However, multiple viruses could result in the post-viral syndrome, which is also common among patients with COVID-19. Therefore, the long-term consequences and the corresponding treatment of COVID-19 should be the focus in the post-epidemic era. In this review, we summarize the therapeutic strategies for the complications and sequelae of eight major systems caused by COVID-19, including respiratory system, cardiovascular system, neurological system, digestive system, urinary system, endocrine system, reproductive system and skeletal complication. In addition, we also sorted out the side effects reported in the vaccine trials. The purpose of this article is to remind people of possible complications and sequelae of COVID-19 and provide robust guidance on the treatment. It is extremely important to conduct long-term observational prognosis research on a larger scale, so as to have a comprehensive understanding of the impact of the SARS-CoV-2 on the human body and reduce complications to the greatest extent.
Assessment of Non-invasive Markers for the Prediction of Esophageal Variceal Hemorrhage
Authors: Li Shasha , Huang Peng , Jeyarajan Andre J. , Ma Chao , Zhu Ke , Zhu Chuanlong , Jiang Ning , Li Ming , Shao Tuo , Han Mingfeng , Tan Lin , Lin Wenyu
Published: December 2021

Background: Esophageal variceal (EV) hemorrhage is a life-threatening consequence of portal hypertension in cirrhotic patients. Screening upper endoscopy and endoscopic variceal ligation to identify and treat EVs have contraindications, complications, and high costs. We sought to identify non-invasive tests (NITs) as alternatives to endoscopic EV screening.

Methods: In this case-control study, we retrospectively analyzed 286 cirrhotic patients treated for EVs at the Second People's Hospital of Fuyang City, China from January to December 2019. We applied ROC curve analysis to assess the accuracy of various NITs in predicting EV hemorrhage.

Results: There were significant differences between the hemorrhage and non-hemorrhage groups in median serum albumin (ALB) (p < 0.001), median bilirubin (TBIL) (p < 0.046), prothrombin (PT) time (p < 0.001), Golgi protein 73 (GP73; p = 0.012) and Child-Pugh (C-P) scores (p < 0.001). For ALB (cutoff <33.2g/L), PT time (cutoff > 14.2 seconds), GP73 (cutoff > 126.4 ng/ml), and C-P scores, the areas under the ROC curves (AUCs) were 73.4% (95% CI: 67.5–79.2), 68.6% (95% CI: 62.4–74.8), 62.2% (95% CI: 52.8–71.5) and 69.8% (95%CI: 63.8–75.8), respectively, with corresponding sensitives of 71.5, 59.8, 69.8, and 92.2% and specificities of 65.6%, 70.1%, 56.5%, and 38.6%. When ALB was combined with GP73, the AUC was 74.3% (95% CI: 66.1–82.5) with a sensitivity of 65.1% and specificity of 76.5%. When ALB, PT, and C-P scores were combined, the AUC was 76.5% (95% CI: 70.9–82.1) with a sensitivity of 79.5% and specificity of 64.3%. When ALB, PT, GP73, and C-P scores were combined, the AUC was 75.2% (95% CI: 67.3–83.1) with a sensitivity of 54.0% and specificity of 86.9%.

Conclusion: ALB, TBIL, GP73, and C-P scores, may be used to predict EV hemorrhage in cirrhotic patients. The combination of multiple NITs is better than a single index and can increase diagnostic performance.
Effect of Geography and Captivity on Scat Bacterial Communities in the Imperiled Channel Island Fox
Authors: Adams Nicole E. , Becker Madeleine A. , Edmands Suzanne
Published: December 2021

With developing understanding that host-associated microbiota play significant roles in individual health and fitness, taking an interdisciplinary approach combining microbiome research with conservation science is increasingly favored. Here we establish the scat microbiome of the imperiled Channel Island fox (Urocyon littoralis) and examine the effects of geography and captivity on the variation in bacterial communities. Using high throughput 16S rRNA gene amplicon sequencing, we discovered distinct bacterial communities in each island fox subspecies. Weight, timing of the sample collection, and sex contributed to the geographic patterns. We uncovered significant taxonomic differences and an overall decrease in bacterial diversity in captive versus wild foxes. Understanding the drivers of microbial variation in this system provides a valuable lens through which to evaluate the health and conservation of these genetically depauperate foxes. The island-specific bacterial community baselines established in this study can make monitoring island fox health easier and understanding the implications of inter-island translocation clearer. The decrease in bacterial diversity within captive foxes could lead to losses in the functional services normally provided by commensal microbes and suggests that zoos and captive breeding programs would benefit from maintaining microbial diversity.
Serratia plymuthica MBSA-MJ1 Increases Shoot Growth and Tissue Nutrient Concentration in Containerized Ornamentals Grown Under Low-Nutrient Conditions
Authors: Nordstedt Nathan P. , Jones Michelle L.
Published: December 2021

High fertilizer rates are often applied to horticulture crop production systems to produce high quality crops with minimal time in production. Much of the nutrients applied in fertilizers are not taken up by the plant and are leached out of the containers during regular irrigation. The application of plant growth promoting rhizobacteria (PGPR) can increase the availability and uptake of essential nutrients by plants, thereby reducing nutrient leaching and environmental contamination. Identification of PGPR can contribute to the formulation of biostimulant products for use in commercial greenhouse production. Here, we have identified Serratia plymuthica MBSA-MJ1 as a PGPR that can promote the growth of containerized horticulture crops grown with low fertilizer inputs. MBSA-MJ1 was applied weekly as a media drench to Petunia×hybrida (petunia), Impatiens walleriana (impatiens), and Viola×wittrockiana (pansy). Plant growth, quality, and tissue nutrient concentration were evaluated 8weeks after transplant. Application of MBSA-MJ1 increased the shoot biomass of all three species and increased the flower number of impatiens. Bacteria application also increased the concentration of certain essential nutrients in the shoots of different plant species. In vitro and genomic characterization identified multiple putative mechanisms that are likely contributing to the strain’s ability to increase the availability and uptake of these nutrients by plants. This work provides insight into the interconnectedness of beneficial PGPR mechanisms and how these bacteria can be utilized as potential biostimulants for sustainable crop production with reduced chemical fertilizer inputs.
One-Step and Colorimetric Detection of Fish Freshness Indicator Hypoxanthine Based on the Peroxidase Activity of Xanthine Oxidase Grade I Ammonium Sulfate Suspension
Authors: Guo Chen , You Shuhan , Li Changmei , Chen Tiantian , Wang Xiudan
Published: December 2021

The global food waste problem, especially aquatic product spoilage, stimulates the accurate freshness analysis of food products. However, it still remains a great challenge to realize in-field determination of fish freshness at the time of use. In the present study, a colorimetric enzyme biosensor was developed for one-step detection of hypoxanthine (Hx), which is an important intermediate of adenosine triphosphate decomposition during fish storage. We demonstrate that xanthine oxidase grade I ammonium sulfate suspension (XOD-ASS) possesses peroxidase activity. It can oxidize different peroxidase substrates, including 3,3′,5,5′-tetramethylbenzidine, 2,2′-azino-bis(3-ethylbenzothiazoline-6-sulfonic acid) diammonium salt, and o-phenylenediamine in the presence of H2O2, producing visible color reactions. Further experiments indicate that XOD-ASS displayed effective peroxidase activity and could be used for H2O2 detection. Based on this, a one-step Hx detection method was established using only XOD-ASS as the catalyst. The method displays a good linear relationship in the range from 20 to 100 μM with a detection limit of 6.93 μM. Additionally, we successfully applied this method in testing Hx accumulation in sea bass fish samples of different storage times. The recovery values range from 97.44 to 102.56%. It is exciting to note that, compared with other methods, our proposed method provides a robust advantage on the economic reaction system, ease of preparation, short time consumption, and moderate reaction temperature. We believe that this method shows good application prospects for on-site fish freshness determination.
Integrative Analysis of MALT1 as a Potential Therapeutic Target for Prostate Cancer and its Immunological Role in Pan-Cancer
Authors: Tan Haotian , Xie Yaqi , Zhang Xuebao , Wu Shuang , Zhao Hongwei , Wu Jitao , Wang Wenting , Lin Chunhua
Published: December 2021

Background: Mucosa-associated lymphoma antigen 1 (MALT1) is an oncogene in subsets of diffuse large B cell lymphoma (DLBCL) and mucosa-associated lymphoid tissue type (MALT) lymphoma. However, the role of MALT1 across cancers, especially in prostate cancer is still poorly understood.

Methods: Here, we used several public datasets to evaluate MALT1 expression. Then, PCa cell lines and nude mice were used to investigate the cellular functions in vitro and in vivo. Microarray data were downloaded from The Cancer Genome Atlas and MALT1 was subjected to gene set enrichment analysis (GSEA) and Gene Ontology (GO) analysis to identify the biological functions and relevant pathways. Additionally, the correlations between MALT1 expression and mismatch repair (MMR) gene mutation, immune checkpoint gene expression, tumor mutational burden (TMB), and microsatellite instability (MSI) were investigated by Pearson correlation analysis. Moreover, the correlation between MALT1 expression and tumor immune infiltration was analyzed by the Tumor Immune Evaluation Resource (TIMER) database.

Results: MALT1 overexpression was significantly correlated with MMR gene mutation levels and crucially promoted proliferation and colony genesis while reducing PCa cell apoptosis levels in vivo and in vitro. MALT1 expression showed strong correlations with immune checkpoint genes, TMB, and MSI in most cancers. The GO analysis indicated that MALT1-coexpressed genes were involved in heterotypic cell-cell adhesion, actin filament-based movement regulation, and action potential regulation. GSEA revealed that MALT1 expression was associated with several signaling pathways, including the NF-κB signaling, Wnt/β-catenin and TGF-β signaling pathways, in PCa. Additionally, MALT1 expression was significantly correlated with the infiltration of immune cells, including B cells, CD8+ T cells, dendritic cells and macrophages, and negatively correlated with CD4+ cell infiltration in PCa.

Conclusion: MALT1 expression is higher in pancancer samples than in normal tissues. MALT1 promoted proliferation and colony genesis while reducing PCa cell apoptosis levels, and MALT1 suppression could inhibit xenograft tumor establishment in nude mice. Furthermore, MALT1 expression is closely related to the occurrence and development of multiple tumors in multiple ways. Therefore, MALT1 may be an emerging therapeutic target for a variety of cancers especially PCa.
Analysis of Electromagnetic Interference and Shielding in the μLED Optrode Based on Finite Element Method
Authors: Wang Yang , Li Yamin , Yang Xiaowei , Wu Xiaoting , Wang Yijun , Pei Weihua
Published: December 2021

Monolithic integrated μLED optrode has promising applications in optogenetics due to their ability to achieve more optical channels in a smaller footprint. The current used to drive the μLED will cause electromagnetic interference (EMI) noise to the recording electrodes at a very close distance. Utilizing a grounded metal shielding layer between the active device and the electrode can potentially reduce the interference. In this paper, multi-dimensional μLED optrode models are set up according to the real device. By numerically analyzing the electromagnetic interference between the μLED and recording electrodes, several optimized shielding schemes are evaluated by simulations and experiments. Some important process and layout parameters that may influence the shielding effect are studied through the finite element method (FEM). Different circuit models based on the corresponding test environment are built to analyze the simulation and experiment results. A new PCB with a shielding layer has been designed and initially verified. The proposed novel computational model can analyze EMI quantitatively, which could facilitate the design of low-noise μLED optrode with reasonable shielding and packaging.