bluuebunny/crossref_metadata_2025 huggingface dataset:
Intra-individual numerical chromosomal polymorphism in Trichomycterus davisi (Siluriformes, Trichomycteridae) from the Iguaçu River basin in Brazil
Authors: Borin Luciana Andreia , Martins-Santos Isabel Cristina
Published: April 2005

Cytogenetic analysis of Trichomycterus davisi, collected from the Iguaçu River basin, has shown a diploid number of 2n = 54 chromosomes. However, we observed intra-individual numerical polymorphism in a T. davisi specimen. There were three cell populations with diploid number 2n = 54 (40M + 12SM + 2ST), 2n = 55 (40M + 12SM + 2ST + 1M) and 2n = 56 (40M + 12SM + 2ST + 2A) chromosomes. This variation was attributed to a probable post-zygotic non-disjunction of a metacentric chromosome of small/middle size, followed by centric fission, which originated in this individual.
Somaclonal variation for disease resistance in wheat and production of dihaploids through wheat x maize hybrids
Authors: Mehta Yeshwant R. , Angra Dilma C.
Published: April 2005

Seven wheat cultivars having some degree of resistance to Bipolaris sorokiniana, Magnaporthe grisea or Xanthomonas campestris pv. undulosa (Xcu) provided somaclonal variation for disease resistance. Callus induction varied from 69.4 to 100% across the cultivars, whereas regeneration frequency of R1 plants (regenerated plants of first generation) varied between 2.7 and 23.1%. Resistance variation in the R2-regenerated second generation plants was observed for B. sorokiniana and M. grisea but not for Xcu. Attempts were made to fix the resistance characteristics of R3-regenerated third generation somaclones through wheat x maize hybrids. Wheat and maize hybridization of seven wheat somaclones yielded 81 embryos. A total of 11,624 somaclone florets were pollinated, of which 8.4% produced haploid embryos across the seven wheat genotypes. Hybrid embryo production varied between 0 and 25%. The somaclones had a constant chromosome number as observed in their original hexaploid wheat genotypes (2n = 6x = 42) whereas the haploid plants had n = 21. Hybrid embryo production and haploid and dihaploid plant production were affected by 2,4-D concentration, but not by the wheat genotype.
Meiotic behavior of several Brazilian soybean varieties
Authors: Bione Nilton Cesar Pires , Pagliarini Maria Suely , Toledo José Francisco Ferraz de
Published: April 2005

Despite the importance of soybeans little cytogenetic work has traditionally been done, due to the small size and apparent similarity of the chromosomes. Fifteen soybean [Glycine max (L.) Merrill] varieties adapted for cultivation in two distinct regions of Brazil were analyzed cytogenetically. A low frequency of meiotic abnormalities was noted in all varieties, although they were not equally affected. Irregular chromosome segregation, chromosome stickiness, cytoplasmic connections between cells, cytomixis and irregular spindles were the main abnormalities observed, none of which had been described previously in soybeans. All of these abnormalities can affect pollen fertility. Pollen fertility was high in most varieties and was correlated with meiotic abnormalities. Although soybean is not a model system for cytological studies, we found that it is possible to conduct cytogenetic studies on this species, though some modifications in the standard methods for meiotic studies were necessary to obtain satisfactory results.
Identification of a RAPD marker linked to the Co-6 anthracnose resistant gene in common bean cultivar AB 136
Authors: Alzate-Marin Ana Lilia , Menarim Henrique , Chagas José Mauro , Barros Everaldo Gonçalves de , Moreira Maurilio Alves
Published: April 2005

The pathogenic variability of the fungus Colletotrichum lindemuthianum represents an obstacle for the creation of resistant common bean (Phaseolus vulgaris L.) varieties. Gene pyramiding is an alternative strategy for the development of varieties with durable resistance. RAPD markers have been proposed as a means to facilitate pyramiding of resistance genes without the need for multiple inoculations of the pathogens. The main aims of this work were to define the inheritance pattern of resistance present in common bean cultivar AB 136 in segregating populations derived from crosses with cultivar Rudá (susceptible to most C. lindemuthianum races) and to identify RAPD markers linked to anthracnose resistance. The two progenitors, populations F1 and F2, F2:3 families and backcross-derived plants were inoculated with race 89 of C. lindemuthianum under environmentally controlled greenhouse conditions. The results indicate that a single dominant gene, Co-6, controls common bean resistance to this race, giving a segregation ratio between resistant and susceptible plants of 3:1 in the F2, 1:0 in the backcrosses to AB 136 and 1:1 in the backcross to Rudá. The segregation ratio of F2:3 families derived from F2 resistant plants was 1:2 (homozygous to heterozygous resistant). Molecular marker analyses in the F2 population identified a DNA band of approximately 940 base pairs (OPAZ20(940)), linked in coupling phase at 7.1 cM of the Co-6 gene. This marker is being used in our backcross breeding program to develop Rudá-derived common bean cultivars resistant to anthracnose and adapted to central Brazil.
Isozyme and RAPD studies in Prosopis glandulosa and P. Velutina (Leguminosae, Mimosoideae)
Authors: Bessega Cecilia , Saidman Beatriz O. , Vilardi Juan C.
Published: April 2005

Allozyme and random amplified polymorphic DNA (RAPD) techniques have been compared for their usefulness for genetic and taxonomic studies in Prosopis glandulosa and P. velutina populations. Isozymes and RAPDs yielded similarly high estimates of genetic variability. Genetic structure and differentiation were analyzed through non-hierarchical Wright's F DT. For all populations considered, both markers produced low gene flow (Nm < 1) estimates. When only P. glandulosa populations were analyzed, isozyme data yielded higher gene flow estimates (Nm > 1), in agreement with that expected for conspecific populations. However, in RAPD data the expected reduction in F DT and the increase in Nm were not observed. Correlation between F DT and geographical distance matrices (Mantel test) for all populations was significant (P = 0.02) when based on isozymes, but not so (P = 0.33) when based on RAPDs. No significant associations among genetic and geographical or climatic variables were observed. Two isoenzyme systems (GOT and PRX) enabled us to distinguish between P. glandulosa and P. velutina, but no diagnostic band for recognition of populations or species studied here were detected by RAPD. However, RAPD markers showed higher values for genetic differentiation among conspecific populations of P. glandulosa and a lower coefficient of variation than those obtained from isozymes.
Selection and genetic gain in rubber tree (Hevea) populations using a mixed mating system
Authors: Costa Reginaldo Brito da , Resende Marcos Deon Vilela de , Araujo Antonio José de , Gonçalves Paulo de Souza , Higa Antonio Rioyei
Published: April 2005

The components of genetic variation and genetic gain obtained with three selection methods - individual, combined and multi-effect index selection - were compared in rubber tree [Hevea brasiliensis (Willd. ex Adr. de Juss.) Muell. Arg.] progenies. The rubber tree is a cross pollinating species with a mixed reproductive system in which the self pollination rate is 22%. Twenty-two half sib progenies were planted at experimental stations at Pindorama, Votuporanga and Jaú, in São Paulo State, using a randomized and complete block design, with five replications and ten plants per plot. Dry rubber production was assessed when the plants were three years old. Based on the genetic variability of the populations, Pindorama was the best environment for the expression of variability. At the individual level, heritability was seriously affected when random progenies from an open pollinating population were considered as half sib progenies. Considerable overestimation of genetic gains occurred during individual, combined and multi-effect index selection when the rubber tree reproductive system was not considered as mixed. Selection based on the multi-effect index maximizes genetic progress and should be used more in rubber tree breeding programs.
Elimination of micronuclei from microspores in a Brazilian oat (Avena sativa L.) variety
Authors: Baptista-Giacomelli Flávia Roseli , Pagliarini Maria Suely , Almeida Juliano Luiz de
Published: April 2005

Chromosome elimination in interspecific hybrids is a powerful tool in breeding programs. Of 12 Brazilian oat varieties recommended for cultivation in southern Brazil, one variety, UFRGS 15, presented a new type of chromosome elimination never described in any other species. Chromosomes that produced micronuclei during meiosis were eliminated from microspores as microcytes. The micronucleus reached the microspore wall and formed a kind of bud, separated from the microspore. The eliminated microcytes gave origin to small and sterile pollen grains. The possible applications of this finding for oat breeding are discussed.
Characterization of a mutant rat kangaroo cell line with alterations in the cell cycle and DNA repair
Authors: Miyaji E.N. , Johnson R.T. , Downes C.S. , Eveno E. , Mezzina M. , Sarasin A. , Menck C.F.M.
Published: April 2005

Using a positive selection system for isolating DNA replication and repair related mutants, we isolated a clone from a rat kangaroo cell line (PtK2) that has increased sensitivity to UV light. Characterization of this clone indicated normal post-replication repair after UV irradiation, and normal removal rates of cyclobutane pyrimidine dimers and pyrimidine(6-4)pyrimidone photoproducts by excision repair. However, this cell line has decreased ability to make early incisions on damaged DNA, possibly indicating a defect in preferential repair of actively transcribed genes, and a slower cell proliferation rate, including a longer S-phase. This phenotype reinforces the present notion that control of key mechanisms in cell metabolism, such as cell cycle control, repair, transcription and cell death, can be linked.
Clinical and biochemical findings in 7 patients with X-linked adrenoleukodystrophy treated with Lorenzo's Oil
Authors: Vargas Carmen R. , Barschak Alethéa G. , Coelho Daniella M. , Furlanetto Vivian , Souza Carolina F.M. de , Karam Simone M. , Jardim Laura , Wajner Moacir , Giugliani Roberto
Published: April 2005

X-Linked adrenoleukodystrophy (X-ALD) is a hereditary disorder of the peroxisomal metabolism biochemically characterized by the accumulation of very long chain fatty acids (VLCFA) in tissues and biological fluids. The major accumulated acids are hexacosanoic acid (C26:0) and tetracosanoic acid (C24:0). The disorder is characterized clinically by central and peripheral demyelination and adrenal insufficiency closely related to the accumulation of fatty acids. The incidence of X-ALD is estimated to be 1:25,000 males. At least six phenotypes can be distinguished. The most common phenotypes are childhood cerebral ALD and adrenomyeloneuropathy (AMN). The recommended therapy consists of the use of the glyceroltrioleate/glyceroltrierucate (GTO/GTE) mixture, known as Lorenzo's Oil, combined with a VLCFA-poor diet. There are alternative treatments such as bone marrow transplantation and immunosuppression, as well as the use of lovastatin and sodium phenylacetate. In the present study we report the clinical and biochemical course of 7 male patients with X-ALD treated with Lorenzo's Oil and a VLCFA-restricted diet. Treatment produced 50% reduction in C26:0 and 42.8% reduction in the C26:0/C22:0 ratio. Most patients remained clinically well, although approximately 30% of them presented a rapid clinical deterioration. The results showed a poor biochemical-clinical correlation for treatment, indicating that new therapies for X-ALD are needed in order to obtain a better prognosis for patients.
Multilocus DNA fingerprinting in paternity analysis: a Chilean experience
Authors: Cifuentes O. Lucía , Armanet B. Leonor , Aguirre A. Raúl , Vargas B. Juana , Acuña P. Mónica
Published: April 2005

DNA polymorphism is very useful in paternity analysis. The present paper describes paternity studies done using DNA profiles obtained with the (CAC)5 probe. All of the subjects studied were involved in nonjudicial cases of paternity. Genomic DNA digested with HaeIII was run on agarose gels and hybridized in the gel with the (CAC)5 probe labeled with 32P. The mean number of bands larger than the 4.3 kb per individual was 16.1. The mean proportion of bands shared among unrelated individuals was 0.08 and the mean number of test bands was 7.1. This corresponded to an exclusion probability greater than 0.999999. Paternity was excluded in 34.5% of the cases. The mutation frequency estimated from non-excluded cases was 0.01143 bands per child. In these cases, the paternity was confirmed by a locus-specific analysis of eight independent PCR-based loci. The paternity index was computed in all non-excluded cases. It can be concluded that this method is a powerful and inexpensive alternative to solve paternity doubts.
Molecular studies of Callithrix pygmaea (Primates, Platyrrhini) based on transferrin intronic and ND1 regions: implications for taxonomy and conservation
Authors: Tagliaro Claudia Helena , Schneider Maria Paula Cruz , Schneider Horacio , Sampaio Iracilda , Stanhope Michael
Published: April 2005

Traditional classifications of Platyrrhini monkeys, based mainly on morphological features, are being contested by recent molecular data. The subfamily Callitrichinae (Platyrrhini, Primates) consists of a diverse group of species, many of them considered endangered. Our analysis of two DNA regions, a mtDNA gene (ND1) and a nuclear gene (intronic regions of the transferrin gene), suggests that Callithrix pygmaea may have sufficient variability to justify the existence of subspecies or even separate species. Phylogenetic dendrograms based on the ND1 region show that this species is more closely related to Amazonian than to Atlantic forest marmosets. These results reopen the discussion about diversity and conservation programs based exclusively on traditional classifications.
Mitochondrial genome organization and vertebrate phylogenetics
Authors: Pereira Sérgio Luiz
Published: April 2005

With the advent of DNA sequencing techniques the organization of the vertebrate mitochondrial genome shows variation between higher taxonomic levels. The most conserved gene order is found in placental mammals, turtles, fishes, some lizards and Xenopus. Birds, other species of lizards, crocodilians, marsupial mammals, snakes, tuatara, lamprey, and some other amphibians and one species of fish have gene orders that are less conserved. The most probable mechanism for new gene rearrangements seems to be tandem duplication and multiple deletion events, always associated with tRNA sequences. Some new rearrangements seem to be typical of monophyletic groups and the use of data from these groups may be useful for answering phylogenetic questions involving vertebrate higher taxonomic levels. Other features such as the secondary structure of tRNA, and the start and stop codons of protein-coding genes may also be useful in comparisons of vertebrate mitochondrial genomes.
Chromosome instability in the murine melanoma cell line K-1735 is due to drug-specific mechanisms
Authors: Nemeth Margit A. , Hsu T.C. , Pathak S.
Published: April 2005

The purpose of the present study was to investigate chromosomal instability and DNA repair by exposing clones from the murine melanoma cell line K-1735 to the radiomimetic drug bleomycin and to the DNA polymerase a inhibitor aphidicolin. Results from previous experiments conducted with human lymphocytes have suggested synergistic chromosomal damage after simultaneous exposure to these two agents. However, in the murine cell line studied here, there was no direct correlation between the effects of these two agents. Indeed, the extensive variation in the responses to aphidicolin and bleomycin suggested different mechanisms for the repair of bleomycin-induced DNA damage by the clones. Evaluation of the unexplained propensity of some bleomycin-treated metaphase cells to disintegrate suggested that this phenomenon was most likely the result of a direct action of bleomycin, rather than a potential manifestation of tumor cell instability.
Correlated responses to selection for large body size in oMt1a-oGH transgenic mice: organ traits
Authors: Parks K.R. , Eisen E.J. , Murray J.D.
Published: April 2005

The objective of the present study was to compare correlated responses in liver, spleen, kidney, heart and testis absolute weights and as a percentage of 8-week body weight following selection for large 8-week body weight in twice-replicated nontransgenic and transgene-carrier lines of mice from two genetic backgrounds. The transgene was an ovine metallothionein 1a-ovine growth hormone (oMt1a-oGH) construct, which was activated by adding 25 mM ZnSO4 to the drinking water. Lines NM and NC were nontransgenic lines derived from a high-growth and randomly selected background, respectively. Lines TM and TC were transgene-carrier lines formed from the respective genetic backgrounds. Line CC was a nontransgenic control from the randomly selected background. At weaning, male mice from each line were assigned to either zinc supplemented or control drinking water. Toe-clips were assayed by PCR for the presence or absence of the transgene. Correlated responses of absolute weights of all organs in nontransgenic lines indicated moderately high genetic correlations of organ weights with body weight, but on a percentage of body weight basis, the correlated responses were much lower. The correlated responses in visceral organ weights were lower in the presence of the inactivated oMt1a-oGH transgene than in its absence. The presence of the activated oMt1a-oGH combined with the effects of selection for growth increase had a greater impact on increasing the size of the splanchnic organs than did selection for large body weight in the absence of the transgene.
A comparison of the hygienic response of Africanized and European (Apis mellifera carnica) honey bees to Varroa-infested brood in tropical Brazil
Authors: Aumeier Pia , Rosenkranz Peter , Gonçalves Lionel Segui
Published: April 2005

In order to examine the significance of hygienic behavior for the tolerance to varroosis of Africanized honey bees, they were compared with non-tolerant Carniolans in tropical Brazil. Capped worker brood cells were artificially infested with living Varroa mites, and inspected some days later. Uncapping, disappearance of the introduced mite and removal of the pupa were recorded in a total of manipulated 3,096 cells during three summer seasons. The hygienic response varied between Africanized and Carniolan colonies, but this difference was significant only in one year, during which Africanized honey bees removed a significantly greater proportion of Varroa mites than European honey bees. A high proportion of the mites disappeared from artificially infested brood cells without damage to the pupae. The opening of the cell and the removal of the bee brood are independent traits of a graded response by adult workers towards mite-infested brood cells. We found a higher between-colony variation in the reaction towards Varroa-infested brood of Africanized honey bees compared to Carniolans. The overall similar response of the two bee types indicates that hygienic behavior is not a key factor in the tolerance to varroosis of Africanized bees in Brazil.
First karyotypical description of two American Ciconiiform birds, Mycteria americana (Ciconiidae) and Platalea ajaja (Threskiornithidae) and its significance for the chromosome evolutionary and biological conservation approaches
Authors: Francisco Mercival Roberto , Galetti Junior Pedro Manoel
Published: April 2005

The karyotypes of Mycteria americana (Ciconiidae) and Platalea ajaja (Threskiornithidae) are described. Both species have a diploid number of 2n = 72. There are slight chromosome morphology differences, which could be related to distinct chromosome evolution pathways of these two families. Besides a better understanding of the chromosome relationships among Ciconiiformes, this first chromosome characterization of M. americana and P. ajaja is an important tool for the conservation of both species.
Genetic evidence for two species of the genus Pimelodus Lacépède, 1803 (Siluriformes, Pimelodidae) in the Iguaçu River (Brazil)
Authors: Renesto Erasmo , Zawadzki Cláudio Henrique , Revaldaves Eloísa
Published: April 2005

The existence of reproductive isolation between two morphs of catfish, endemic to the Iguaçu River (Brazil), was examined by enzyme starch gel electrophoresis. Tissues of 19 catfish (Pimelodus ortmanni) and 15 of a similar morph (Pimelodus sp.), which differs from P. ortmanni by presenting larger and more scattered dusky spots on its skin, were analyzed. A Nei's (1978) genetic identity of 0.551 was determined by the analysis of 22 enzyme loci. The loci EST*1, EST*2, GDH*1, GPI*1, GPI*2, IDH*1, MDH*1, MDH*2, and PGM*1 were fixed for different alleles in each morph, that is, no heterozygote was found for these loci. The enzymatic patterns observed for the two morphs indicate both that the taxa are reproductively isolated and that they in fact represent separate species.
Variations of protein profiles and calcium and phospholipase A2 concentrations in thawed bovine semen and their relation to acrosome reaction
Authors: Marques V. Alonso , Goulart L.R. , Silva A.E.D. Feliciano
Published: April 2005

Just as calcium plays an integral role in acrosome capacitation and reaction, several spermatozoon proteins have been reported as binding to the ovum at fertilization. We examined the relationship between thawed bovine semen protein profiles, seminal plasma calcium ion concentration, spermatozoon phospholipase A2 (PLA2) activity and acrosome reaction. Electrophoretic profile analysis of spermatozoa and bovine seminal plasma proteins (total and membrane) revealed qualitative and quantitative differences among bulls. Variations in PLA2 and seminal plasma calcium concentration indicated genetic diversity among individuals. A 15.7-kDa membrane protein was significantly correlated (r = 0.71) with acrosome reaction, which in turn has been associated with in vivo fertility.
PCR screening and allele frequency estimation of bovine leukocyte adhesion deficiency in Holstein and Gir cattle in Brazil
Authors: Ribeiro Luciana A. , Baron Erica E. , Martinez Mário L. , Coutinho Luiz L.
Published: April 2005

Bovine leukocyte adhesion deficiency (BLAD) is a disease known to affect the Holstein cattle breed throughout the world. Eighty-eight Holstein dairy cows and 88 Gir dairy bulls were genotyped by PCR for the CD18 BLAD alelle. The frequency of the BLAD mutant allele and the BLAD-carrier prevalence in Brazilian Holstein cows were 2.8 and 5.7%, respectively. No mutant allele was found in any of the 88 Gir animals. We conclude that the CD18 gene mutation is prevalent in Brazilian Holstein cattle and absent or present at a very low frequency in Gir cattle.
Response to recurrent selection under small effective population size
Authors: Souza Jr. Cláudio Lopes de , Geraldi Isaias Olívio , Vencovsky Roland
Published: April 2005

A formula was derived for the prediction of the response to recurrent selection when the effective population size (Ne) is small. Usually, responses to selection have been estimated by Rs = icsigma²A/sigmaPh, where i, c, sigma²A, and sigmaPh stand for standardized selection differential, parental control, additive variance, and phenotypic standard deviation, respectively. This expression, however, was derived under the assumption of infinite population size. By introducing the effects of finite population size, the expression derived was Rs = [ic(sigma²A + deltaFD1)/sigmaPh] - DFID, where deltaF, ID and D1 are the changes in the inbreeding coefficient, the inbreeding depression, and the covariance of additive and homozygous dominance effects, respectively. Thus, the predicted responses to selection based on these expressions will be smaller than those based on the standard procedures for traits with a high level of dominance such as yield. Responses to five cycles of half-sib selection were predicted for maize by both expressions, considering that 100 progenies were evaluated and 10 S1 progenies were recombined, which corresponds to Ne = 10 for each cycle. The accumulated response to selection estimated with the new expression was about 47 and 28% smaller than that based on the standard expression for yield and plant height, respectively. Thus, the expression usually used overestimates the responses to selection, which is in agreement with reported results, because it does not take into account the effective population size that is generally small in recurrent selection programs
Genetics of naked grain oats in crosses with Brazilian genotypes
Authors: Cabral Cândida Braga , Milach Sandra Cristina Kothe , Federizzi Luiz Carlos , Bothona Cristhiane Abegg , Taderka Ivone , Tisian Luis Marcelo , Limberger Emerson
Published: April 2005

Six crosses between three naked oat (Avena sativa L.) germplasm sources from the USA and Australia and three Brazilian hulled genotypes were studied for the segregation of naked grain and multiflorous spikelet traits in the F2 and F3 generations. One major gene with incomplete dominance and expressivity for both traits was identified in all populations. The occurrence of intermediate types for naked grain varied with the population and did not depend on the germplasm source of naked grain used. The frequency of intermediate types varied among F2 populations indicating that selection for higher expressivity of naked grain could be used to develop Brazilian oat lines with naked grain.
The parametric restrictions of the Gardner and Eberhart diallel analysis model: heterosis analysis
Authors: Viana José Marcelo Soriano
Published: April 2005

It was studied the parametric restrictions of the diallel analysis model of Griffing, method 2 (parents and F1 generations) and model 1 (fixed), in order to address the questions: i) does the statistical model need to be restricted? ii) do the restrictions satisfy the genetic parameter values? and iii) do they make the analysis and interpretation easier? Objectively, these questions can be answered as: i) yes, ii) not all of them, and iii) the analysis is easier, but the interpretation is the same as in the model with restrictions that satisfy the parameter values. The main conclusions were that: the statistical models for combining ability analysis are necessarily restricted; in the Griffing model (method 2, model 1), the restrictions relative to the specific combining ability (SCA) effects,  and  for all j, do not satisfy the parametric values, and the same inferences should be established from the analyses using the model with restrictions that satisfy the parametric values of SCA effects and that suggested by Griffing. A consequence of the restrictions of the Griffing model is to allow the definition of formulas for estimating the effects, their variances and the variances of contrasts of effects, as well as for calculating orthogonal sums of squares.
The parametric restrictions of the Griffing diallel analysis model: combining ability analysis
Authors: Viana José Marcelo Soriano
Published: April 2005

It was studied the parametric restrictions of the diallel analysis model of Griffing, method 2 (parents and F1 generations) and model 1 (fixed), in order to address the questions: i) does the statistical model need to be restricted? ii) do the restrictions satisfy the genetic parameter values? and iii) do they make the analysis and interpretation easier? Objectively, these questions can be answered as: i) yes, ii) not all of them, and iii) the analysis is easier, but the interpretation is the same as in the model with restrictions that satisfy the parameter values. The main conclusions were that: the statistical models for combining ability analysis are necessarily restricted; in the Griffing model (method 2, model 1), the restrictions relative to the specific combining ability (SCA) effects,  and  for all j, do not satisfy the parametric values, and the same inferences should be established from the analyses using the model with restrictions that satisfy the parametric values of SCA effects and that suggested by Griffing. A consequence of the restrictions of the Griffing model is to allow the definition of formulas for estimating the effects, their variances and the variances of contrasts of effects, as well as for calculating orthogonal sums of squares.
Components of variation of polygenic systems with digenic epistasis
Authors: Viana José Marcelo Soriano
Published: April 2005

In this paper an extension of the biometric model of Mather and Jinks for the analysis of variation with digenic epistasis is presented. Epistatic effects can contribute favorably to the determination of the genotypic values of selected individuals or families and of superior hybrids. Selection will be inefficient, however, if there is a large number of interacting genes because the epistatic components of the between-family and within-family genotypic variances are very high compared to the portion attributable to the average effects of genes. Selection tends to be efficient when the number of interacting genes is reduced, but this depends on the magnitude of due to dominance and environmental variances. The dominance component (H) and the epistatic component due to interactions between homozygous and heterozygous genic combinations (J) can only be estimated when one or more quadratic statistics from the S3 generation, obtained by randomly mating F2 individuals, are used.
Directed mutagenesis affects recombination in Azospirillum brasilense nif genes
Authors: Nunes C.P. , Passaglia L.M.P. , Schrank A. , Schrank I.S.
Published: April 2005

In order to improve the gene transfer/mutagenesis system for Azospirillum brasilense, gene-cartridge mutagenesis was used to replace the nifD gene with the Tn5 kanamycin resistance gene. The construct was transferred to A. brasilense by electrotransformation. Of the 12 colonies isolated using the suicide plasmid pSUP202 as vector, only four did not show vector integration into the chromosome. Nevertheless, all 12 colonies were deficient in acetylene reduction, indicating an Nif- phenotype. Four Nif- mutants were analyzed by Southern blot, using six different probes spanning the nif and Km r genes and the plasmid vector. Apparently, several recombination events occurred in the mutant genomes, probably caused mainly by gene disruption owing to the mutagenesis technique used: resistance gene-cartridge mutagenesis combined with electrotransformation.
Chromosome studies on Brazilian cerrado plants
Authors: Forni-Martins Eliana Regina , Martins Fernando Roberto
Published: April 2005

Cerrado is the Brazilian name for the neotropical savanna, which occurs mainly in Brazilian Central Plateau, composed of herbaceous-subshrubby and shrubby-arboreal floras, both of which are heliophilous, highly diverse and regionally differentiated. Considering species distribution and chromosome numbers, some authors have proposed that the herbaceous-subshrubby flora of the neotropical savanna is quite old, while the shrubby-arboreal flora is derived from forests, a hypothesis that implies higher chromosome numbers in the savanna than in the forest. If, however, chromosome numbers are similar in the cerrado and in forests, both could be similarly old, indicating that bi-directional flow of flora occurred in the past. This paper presents data on chromosome numbers and microsporogenesis for 20 species in 13 families collected in the States of São Paulo, Goiás and Minas Gerais, providing previously unpublished data for Myrcia (Myrtaceae), Luxemburgia (Ochnaceae) and Hortia (Rutaceae). Meiosis proved to be normal, indicating regularity in the sexual reproductive process. Chromosome numbers varied from 2n = 18 (Allamanda angustifolia: Apocynaceae) to 2n = ca. 104 (Ouratea spectabilis: Ochnaceae), being low (20 < 2n < 30) in most of the species. Since similar numbers have been observed with forest species, it is not, at the moment, possible to support the hypothesis that cerrado species derived from the surrounding forests. Instead, we suggest the possibility of a bi-directional exchange of floristic elements between cerrado and forests during evolutionary time.
Cytogenetics and cytotaxonomy of some Brazilian species of Cymbidioid orchids
Authors: Félix Leonardo Pessoa , Guerra Marcelo
Published: April 2005

The Cymbidioid phylad presents the widest chromosome number variation among orchids, with records varying from 2n = 10 in Psygmorchis pusilla to 2n = 168 in two species of Oncidium. In the present work, a total of 44 species were studied belonging to 20 Cymbidioid genera, as a contribution to clarifying the karyological evolution of the group. All the plants investigated were collected in Brazil, mainly in the northeast region. The chromosome variation found was similar to that previously registered in the literature. Chromosome numbers observed were: 2n = 54 (subtribe Eulophiinae), 2n = 44, 46, 92 (subtribe Cyrtopodiinae), 2n = 54, ca. 108 (subtribe Catasetinae), 2n = 52, ca. 96 (subtribe Zygopetalinae), 2n = 40, 80 (subtribe Lycastinae), 2n = 40, 42 (subtribe Maxillariinae), 2n = 40 (subtribe Stanhopeinae), 2n = 56 (subtribe Ornithocephalinae), and 2n = 12, 20, 30, 36, 42, 44, 56, 112, ca. 168 (subtribe Oncidiinae). Interphase nuclei varied widely from simple chromocenter to complex chromocenter types, with no apparent cytotaxonomic value. In the genera Catasetum and Oncidium, the terrestrial and lithophytic species presented higher ploidy levels than the epiphytic species, suggesting a higher adaptability of the polyploids to those habitats. The primary base number x = 7 seems to be associated to the haploid chromosome numbers of most Cymbidioid groups, although n = 7 was observed only in two extant genera of Oncidiinae. For each tribe, subtribe and genus the probable base numbers were discussed along with the possible relationships to the primary base number x1 = 7 admitted for the whole phylad.
Meiotic behavior of economically important plant species: the relationship between fertility and male sterility
Authors: Pagliarini Maria Suely
Published: April 2005

Meiosis is an event of high evolutionary stability which culminates in a reduction of chromosome number. The normal and harmonious course of meiosis ensures gamete viability. The cytologic events of gametogenesis are controlled by a large number of genes that act from premeiotic to postmeiotic mitosis. Mutations in these genes cause anomalies that may impair fertility, and many abnormalities affecting plant fertility or causing total male sterility have been detected during the evaluation of meiotic behavior in some species. Some of these abnormalities have been frequently described in the literature, while others have not been previously reported. The most frequent abnormalities found in the species analyzed were irregular chromosome segregation, cytomixis, chromosome stickiness, mixoploidy, chromosome fragmentation, syncyte formation, abnormal spindles, and failure of cytokinesis. Uncommon abnormalities, such as chromosome elimination during microsporogenesis, were found in one species. Original meiotic mutations affecting different steps of meiosis were also observed in these species, especially in maize, Paspalum and soybean. Some mutants present characteristics that may be exploited successfully in breeding programs because they cause total male sterility.
Anti-topoisomerase drugs as potent inducers of chromosomal aberrations
Authors: Bassi Loredana , Palitti Fabrizio
Published: April 2005

DNA topoisomerases catalyze topological changes in DNA that are essential for normal cell cycle progression and therefore they are a preferential target for the development of anticancer drugs. Anti-topoisomerase drugs can be divided into two main classes: "cleavable complex" poisons and catalytic inhibitors. The "cleavable complex" poisons are very effective as anticancer drugs but are also potent inducers of chromosome aberrations so they can cause secondary malignancies. Catalytic inhibitors are cytotoxic but they do not induce chromosome aberrations. Knowledge about the mechanism of action of topoisomerase inhibitors is important to determine the best anti-topoisomerase combinations, with a reduced risk of induction of secondary malignancies.
Interchromosomal distribution of gamma ray-induced chromatid aberrations in Chinese hamster ovary cells
Authors: Martínez-López Wilner , Porro Valentina , Folle Gustavo A. , Mendez-Acuña Leticia , Savage John R.K. , Obe Günter
Published: April 2005

Interchromosomal distributions of breakpoints from chromatid-type aberrations induced by gamma rays in Chinese hamster ovary (CHO) cells were analyzed. In most chromosomes the distribution was as expected from chromosome lengths for simple breaks or the respective relative corrected length in case of exchanges. There were deviations from expectation in a few chromosomes for chromatid breaks, interchanges, intra-arm intrachanges and inter-arm intrachanges. Especially interesting are the results concerning chromosomes 2 and 8, which were more often involved in exchanges than expected. An "exchange phenotype" for these chromosomes is proposed and possible explanations for the nonrandom distribution of chromosome breakpoints are presented.
Validation of the micronucleus-centromere assay for biological dosimetry
Authors: Wojcik A. , Kowalska M. , Bouzyk E. , Buraczewska I. , Kobialko G. , Jarocewicz N. , Szumiel I.
Published: April 2005

The micronucleus assay is frequently used for purposes of biological dosimetry. Due to high interindividual variability in the spontaneous frequency of micronuclei, its sensitivity in the low dose region is poor. It has been suggested that this problem can be mitigated by selectively analyzing the frequency of those micronuclei which contain only acentric fragments. Using a pan-centromeric FISH probe we have studied the dose dependence of micronuclei with centromeres in peripheral lymphocytes of human donors. In contrast to previous publications, our approach is based on determining the relative frequency of micronuclei with and without centromeric signals. Our results confirm previous observations that in the low dose range of ionizing radiation, the micronucleus-centromere assay is more sensitive than the conventional micronucleus test.
Immunofluorescence in cytogenetic analysis: method and applications
Authors: Jeppesen Peter
Published: April 2005

Control of the genetic information encoded by DNA in mammalian chromosomes is mediated by proteins, some of which are only transiently attached, although others are intrinsically associated with nucleic acid in the complex mixture known as chromatin. Chromatin-associated proteins range from the ubiquitous and abundant histones down to the most specific and rare of transcription factors. Although many chromatin proteins are probably excluded from highly condensed mitotic chromosomes, a number are retained throughout the cell cycle and can be detected on chromosomes in metaphase spreads. Comparing the distribution of a chromosomal protein with known cytogenetic markers on metaphase chromosomes can provide an important and potentially highly informative first source of data on the function of the protein under consideration. The aim of the present study is to summarize some of the principles involved in obtaining suitable chromosome preparations for subsequent immunolocalization of protein antigens. Some applications of the method will be included to illustrate how this approach has increased our understanding of chromosome structure and genetic regulation.
Chromosomal damage in air crew members of international flights: A preliminary report
Authors: Picco S.J. , De Luca J.C. , MacIntyre C. , Dulout F.N.
Published: April 2005

Air crew members of international flights are exposed to ionizing radiations originated from the collision of cosmic particles with atoms of the atmosphere. The degree of exposure varies according to the altitude, latitude, and solar activity. The cytogenetical analysis showed a significant increase of dicentric chromosomes (14.5 ± 0.76 per 1,000 cells) in active air crew members as well as in retired air crew members (7.5 ± 0.59 per 1,000 cells) in relation to controls (0.5 ± 0.05 per 1,000 cells). In active members the frequency of ring chromosomes was also increased (2.0 ± 0.31 per 1,000 cells) but not found in retired crew members. These observations suggest a high degree of exposure to ionizing radiations of air crew personnel. Consequently, the cytogenetic follow-up of air crews chronically exposed to low radiation doses is an open field for further investigations.
Trimming and clustering sugarcane ESTs
Authors: Telles Guilherme P. , Silva Felipe R. da
Published: April 2005

The original clustering procedure adopted in the Sugarcane Expressed Sequence Tag project (SUCEST) had many problems, for instance too many clusters, the presence of ribosomal sequences, etc. We therefore redesigned the clustering procedure entirely, including a much more careful initial trimming of the reads. In this paper the new trimming and clustering strategies are described in detail and we give the new official figures for the project, 237,954 expressed sequence tags and 43,141 clusters.
The sugarcane signal transduction (SUCAST) catalogue: prospecting signal transduction in sugarcane
Authors: Souza Glaucia Mendes , Simoes Ana Carolina Quirino , Oliveira Katia Cristina , Garay Humberto Miguel , Fiorini Leonardo Costa , Gomes Felipe dos Santos , Nishiyama-Junior Milton Yutaka , Silva Aline Maria da
Published: April 2005

EST sequencing has enabled the discovery of many new genes in a vast array of organisms, and the utility of this approach to the scientific community is greatly increased by the establishment of fully annotated databases. The present study aimed to identify sugarcane ESTs sequenced in the sugarcane expressed sequence tag (SUCEST) project (http://sucest.lad.ic.unicamp.br) that corresponded to signal transduction components. We also produced a sugarcane signal transduction (SUCAST) catalogue (http://sucest.lad.ic.unicamp.br/private/mining-reports/QG/QG-mining.htm) that covered the main categories and pathways. Expressed sequence tags (ESTs) encoding enzymes for hormone (gibberellins, ethylene, auxins, abscisic acid and jasmonic acid) biosynthetic pathways were found and tissue specificity was inferred from their relative frequency of occurrence in the different libraries. Whenever possible, transducers of hormones and plant peptide signaling were catalogued to the respective pathway. Over 100 receptors were found in sugarcane, which contains a large family of Ser/Thr kinase receptors and also photoreceptors, histidine kinase receptors and their response regulators. G-protein and small GTPases were analyzed and compared to known members of these families found in mammalian and plant systems. Major kinase and phosphatase pathways were mapped, with special attention being given to the MAP kinase and the inositol pathway, both of which are well known in plants.
In silico characterization and expression analyses of sugarcane putative sucrose non-fermenting-1 (SNF1) related kinases
Authors: Carraro Dirce Maria , Lambais Marcio R. , Carrer Helaine
Published: April 2005

Sucrose non-fermenting-1-related protein kinases (SnRKs) may play a major role in regulating gene expression in plant cells. This family of regulatory proteins is represented by sucrose non-fermenting-1 (SNF1) protein kinase in Saccharomyces cerevisiae, AMP-activated protein kinases (AMPKs) in mammals and SnRKs in higher plants. The SnRK family has been reorganized into three subfamilies according to the evolutionary relationships of their amino acid sequences. Members of the SnRK subfamily have been identified in several plants. There is evidence that they are involved in the nutritional and/or environmental stress response, although their roles are not yet well understood. We have identified at least 22 sugarcane expressed sequence tag (EST) contigs encoding putative SnRKs. The amino acid sequence alignment of both putative sugarcane SnRKs and known SnRKs revealed a highly conserved N-terminal catalytic domain. Our results indicated that sugarcane has at least one member of each SnRK subfamily. Expression pattern analysis of sugarcane EST-contigs encoding putative SnRKs in 26 selected cDNA libraries from the sugarcane expressed sequence tag SUCEST database has indicated that members of this family are expressed throughout the plant. Members of the same subfamily showed no specific expression patterns, suggesting that their functions are not related to their phylogenic relationships based on N-terminal amino acid sequence phylogenetic relationships.
A search for homologues of plant photoreceptor genes and their signaling partners in the sugarcane expressed sequence tag (Sucest) database
Authors: Santelli Roberto V. , Siviero Fábio
Published: April 2005

A search in the sugarcane expressed sequence tag (SUCEST) database for homologues of plant genes involved in photo-sensory mechanisms was carried out using the basic local alignment tool (BLAST). Our results shown that known elements (phytochromes, cryptochromes and phototoprin) present in Arabidopsis and other higher plants were detected with low e-values. We also searched for proteins interacting with photoreceptors in primary or downstream signaling events. One putative homologue for a protein postulated to be a primary element in phytochrome signaling pathways was identified, as were other candidates for downstream interacting factors.
Phylogenetic relationships between Arabidopsis and sugarcane bZIP transcriptional regulatory factors
Authors: Vincentz Michel , Schlögl Paulo S. , Corrêa Luis Gustavo G. , Kühne Fabiana , Leite Adilson
Published: April 2005

We built a complete and non-redundant database of bZIP transcriptional regulatory factors from the Arabidopsis reference genome. These Arabidopsis bZIP factors were ordered into thirteen families of evolutionary related proteins and this classification was used to identify and organize sugarcane cDNAs encoding bZIP proteins. We also show how this classification should help in defining putative clusters of orthologous groups of higher plant bZIP regulators and briefly discuss the expected benefits of this procedure to efficiently characterize sugarcane bZIP transcriptional regulators.
Dissecting the sugarcane expressed sequence tag (SUCEST) database: unraveling flower-specific genes
Authors: Figueiredo R.C. , Brito M.S. , Figueiredo L.H.M. , Quiapin A.C. , Vitorelli P.M. , Silva L.R. , Santos R.V. , Molfetta J.B. , Goldman G.H. , Goldman M.H.S.
Published: April 2005

There are almost 260,000 independent clones sequenced from the 5’ end in the Sugarcane Expressed Sequence Tag (SUCEST) database, which have been obtained from 37 cDNA libraries prepared from different tissues. This large number of expressed sequence tags (ESTs) provides an opportunity, unprecedented in plants, to perform ‘digital differential screening’ on selected cDNA libraries. In general, the frequency of a particular EST correlates with transcript accumulation in the tissues from which the cDNA libraries were constructed, so it is possible to compare the whole transcriptome from different tissues using computer-assisted analysis of an EST database. In our research we analyzed sugarcane ESTs according to tissue expression and identified more than 1,000 putative flower-specific genes. The fact that using this technique we were able to identify sugarcane homologues of several genes previously described as pollen-specific justifies this method of assessing tissue specificity. In addition, ESTs similar to genes specific to reproductive organs were detected e.g. a sugarcane gene encoding a meiotic protein essential for assembly of the synaptonemal complex and normal synapsis. This approach also allowed the identification of many flower-specific anonymous sequences that are good candidates for being novel genes involved in plant reproduction. This paper describes the analysis of the gene expression levels of 24 EST clusters during flower development using a ‘digital northern blot’ constructed from direct EST counts made on the non-normalized sugarcane cDNA libraries.