bluuebunny/crossref_metadata_2025 huggingface dataset:
Establishment of a Genetically Diverse, Disease-Resistant Acacia koa A. Gray Seed Orchard in Kokee, Kauai: Early Growth, Form, and Survival
Authors: Dudley Nicklos , Jones Tyler , Gerber Kaitlin , Ross-Davis Amy L. , Sniezko Richard A. , Cannon Phil , Dobbs John
Published: November 2020

Background and Objectives: Koa (Acacia koa A. Gray) is an economically, ecologically, and culturally valuable tree species endemic to Hawaii. A vascular wilt disease caused by the fungal pathogen Fusarium oxysporum f. sp. koae Gardner (FOXY) induces high rates of mortality in plantings and threatens native koa forests as well. Landowners are reluctant to consider koa for reforestation purposes in many areas due to the risk of mortality caused by FOXY. Producing seeds with genetic resistance to FOXY is vital to successful koa reforestation and restoration. The Hawaii Agriculture Research Center (HARC), with both public and private partners, operates a tree improvement program to develop wilt-resistant koa populations in Hawaii. The population genetics of koa is poorly understood and seed zones are evolving. Thus, HARC uses provisional seed zones based on genetic and biogeographic variables and has selected wilt-resistant koa populations that are locally found in Kokee, Kauai (eco-regions) of Hawaii. Materials and Methods: To make these selections, virulent FOXY isolates were used in previous seedling inoculation trials to evaluate resistance levels among koa families in greenhouse experiments, and the most resistant families were used in the field trial reported here. Results: In this trial, survival rates two years after planting varied by family, and ranged from 45% to 95%, but all resistant families had greater survival rates than the susceptible control (25%). The trial has been converted to a seed orchard. Conclusions: The higher survival rates of the families are encouraging and seeds coming from the orchard will improve the success of future restoration and reforestation efforts. Within these resistant families it was also possible to make some selections based on height, growth, diameter, and stem form. Thus, the establishment of a wilt-resistant seed orchard results in locally adapted, eco-region specific, disease-resistant koa seed that will allow for the restoration of this iconic species and provide plant material for commercial reforestation opportunities at the landscape level.
Bound Water Content and Pore Size Distribution of Thermally Modified Wood Studied by NMR
Authors: Cai Chenyang , Zhou Fanding , Cai Jiabin
Published: November 2020

The physical and mechanical properties of thermally modified wood (TMW) have been comprehensively studied; however, the quantitative analysis of water states and cell wall pores of TMW is limited. In this work, Douglas fir and Norway spruce were thermally modified at 180, 200 and 220 °C, and then studied by NMR cryoporometry method. The results show that thermally modified samples had lower fiber saturation point and the bound water content than the reference samples at all the experimental temperatures, indicating the reduced hygroscopicity due to thermal modification (TM). In addition, TM decreased number of hygroscopic groups, which can be implied by the decreased proportion of bound water sites, and TM also increased the proportion of small voids for bound water clusters. An increase in TM intensity resulted in lower bound water content and a smaller number of hygroscopic groups. In summary, the NMR method detected the water states and pore size distribution and confirmed that TM decreased the fiber saturation point and hygroscopicity of wood by reducing the bound water content and proportion of bound water sites in wood cell walls.
The Cryobiotechnology of Oaks: An Integration of Approaches for the Long-Term Ex Situ Conservation of Quercus Species
Authors: Ballesteros Daniel , Pritchard Hugh W.
Published: November 2020

Conventional dry seed storage is unlikely for about one third of all tree species (and nearly half of evergreen rain forest trees) as they probably produce desiccation sensitive (recalcitrant) seeds. Consequently, international ex situ conservation targets for threatened trees will be difficult to achieve without innovation, especially in cryobiotechnology. We assessed progress in the development of various cryobiotechnology approaches for the preservation of oaks (Quercus), which are keystone species of functioning landscapes, important to the bioeconomy and under increasing threats from the spread of pests and diseases under a changing climate. Various tissues of oaks can be used for banking, from pollen grains to embryo axes. Pollen from five oak species have been shown to be highly desiccation tolerant, making dry pollen storage at low temperatures (including in liquid nitrogen) a valuable technology to support conservation and breeding programs. Somatic embryo (SE) technology and/or shoot tip in vitro technology is available for 39 species, and SE cryopreservation is routinely performed on three commercial species and shoot tips cryopreservation successful in two more species. Seed embryonic axes are the preferred explants for oak ex situ conservation, with tissue survival and regeneration of plants after cryopreservation recorded for 14 and seven species respectively; although differential responses between the shoot and root meristems in the axes are known. Dormant bud preservation seems promising, but is under-researched. Overall, these results indicate the possibility of establishing an integrated platform for the ex situ conservation of oak species based on cryobiotechnology. Challenges of explant choice, optimization of methodologies and large-scale application do remain. However, multiple approaches for the cryopreservation of oak genetic resources are available and implementation programmes should not be delayed, particularly in the centres of species diversity.
Detecting Harvest Events in Plantation Forest Using Sentinel-1 and -2 Data via Google Earth Engine
Authors: Xulu Sifiso , Mbatha Nkanyiso , Peerbhay Kabir , Gebreslasie Michael
Published: November 2020

South Africa is reported to experience timber shortages as a result of growing timber demands and pulp production, coupled with the government’s reluctance to grant new forestry permits. Rampant timber theft in the country makes these circumstances worse. The emergence of cloud-based platforms, such as Google Earth Engine (GEE), has greatly improved the accessibility and usability of high spatial and temporal Sentinel-1 and -2 data, especially in data-poor countries that lack high-performance computing systems for forest monitoring. Here, we demonstrate the potential of these resources for forest harvest detection. The results showed that Sentinel-1 data are efficient in detecting clear-cut events; both VH and VV backscatter signals decline sharply in accordance with clear-cutting and increase again when forest biomass increases. When correlated with highly responsive NDII, the VH and VV signals reached the best accuracies of 0.79 and 0.83, whereas the SWIR1 achieved –0.91. A Random Forest (RF) algorithm based on Sentinel-2 data also achieved over 90% accuracies for classifying harvested and forested areas. Overall, our study presents a cost-effective method for mapping clear-cut events in an economically important forestry area of South Africa while using GEE resources.
Numerical Study of the Effects of Twin-Fluid Atomization on the Suspension Plasma Spraying Process
Authors: Jadidi Mehdi , Moghtadernejad Sara , Hanson Jack
Published: November 2020

Suspension plasma spraying (SPS) is an effective technique to enhance the quality of the thermal barrier, wear-resistant, corrosion-resistant, and superhydrophobic coatings. To create the suspension in the SPS technique, nano and sub-micron solid particles are added to a base liquid (typically water or ethanol). Subsequently, by using either a mechanical injection system with a plain orifice or a twin-fluid atomizer (e.g., air-blast or effervescent), the suspension is injected into the high-velocity high-temperature plasma flow. In the present work, we simulate the interactions between the air-blast suspension spray and the plasma crossflow by using a three-dimensional two-way coupled Eulerian–Lagrangian model. Here, the suspension consists of ethanol (85 wt.%) and nickel (15 wt.%). Furthermore, at the standoff distance of 40 mm, a flat substrate is placed. To model the turbulence and the droplet breakup, Reynolds Stress Model (RSM) and Kelvin-Helmholtz Rayleigh-Taylor breakup model are used, respectively. Tracking of the fine particles is continued after suspension’s fragmentation and evaporation, until their deposition on the substrate. In addition, the effects of several parameters such as suspension mass flow rate, spray angle, and injector location on the in-flight behavior of droplets/particles as well as the particle velocity and temperature upon impact are investigated. It is shown that the injector location and the spray angle have a significant influence on the droplet/particle in-flight behavior. If the injector is far from the plasma or the spray angle is too wide, the particle temperature and velocity upon impact decrease considerably.
Eco-Evolutionary Feedbacks and the Maintenance of Metacommunity Diversity in a Changing Environment
Authors: Fielding Aidan P. , Pantel Jelena H.
Published: November 2020

The presence and strength of resource competition can influence how organisms adaptively respond to environmental change. Selection may thus reflect a balance between two forces, adaptation to an environmental optimum and evolution to avoid strong competition. While this phenomenon has previously been explored in the context of single communities, its implications for eco-evolutionary dynamics at the metacommunity scale are largely unknown. We developed a simulation model for the evolution of a quantitative trait that influences both an organism’s carrying capacity and its intra- and interspecific competitive ability. In the model, multiple species inhabit a three-patch landscape, and we investigated the effect of varying the connectivity level among patches, the presence and pace of directional environmental change, and the strength of competition between the species. Our model produced some patterns previously observed in evolving metacommunity models, such as species sorting and community monopolization. However, we found that species sorting was diminished even at low rates of dispersal and was influenced by competition strength, and that monopolization was observed only when environmental change was very rapid. We also detected an eco-evolutionary feedback loop between local phenotypic evolution at one site and competition at another site, which maintains species diversity in some conditions. The existence of a feedback loop maintained by dispersal indicates that eco-evolutionary dynamics in communities operate at a landscape scale.
TYK2 Variants in B-Acute Lymphoblastic Leukaemia
Authors: Turrubiartes-Martínez Edgar , Bodega-Mayor Irene , Delgado-Wicke Pablo , Molina-Jiménez Francisca , Casique-Aguirre Diana , González-Andrade Martín , Rapado Inmaculada , Camós Mireia , Díaz-de-Heredia Cristina , Barragán Eva , Ramírez-Orellana Manuel , Aguado Beatriz , Figuera Ángela , Martínez-López Joaquín , Fernández-Ruiz Elena
Published: November 2020

B-cell precursor acute lymphoblastic leukaemia (B-ALL) is a malignancy of lymphoid progenitor cells with altered genes including the Janus kinase (JAK) gene family. Among them, tyrosine kinase 2 (TYK2) is involved in signal transduction of cytokines such as interferon (IFN) α/β through IFN−α/β receptor alpha chain (IFNAR1). To search for disease-associated TYK2 variants, bone marrow samples from 62 B-ALL patients at diagnosis were analysed by next-generation sequencing. TYK2 variants were found in 16 patients (25.8%): one patient had a novel mutation at the four-point-one, ezrin, radixin, moesin (FERM) domain (S431G) and two patients had the rare variants rs150601734 or rs55882956 (R425H or R832W). To functionally characterise them, they were generated by direct mutagenesis, cloned in expression vectors, and transfected in TYK2-deficient cells. Under high-IFNα doses, the three variants were competent to phosphorylate STAT1/2. While R425H and R832W induced STAT1/2-target genes measured by qPCR, S431G behaved as the kinase-dead form of the protein. None of these variants phosphorylated STAT3 in in vitro kinase assays. Molecular dynamics simulation showed that TYK2/IFNAR1 interaction is not affected by these variants. Finally, qPCR analysis revealed diminished expression of TYK2 in B-ALL patients at diagnosis compared to that in healthy donors, further stressing the tumour immune surveillance role of TYK2.
Progressive Early-Onset Leukodystrophy Related to Biallelic Variants in the KARS Gene: The First Case Described in Latin America
Authors: Vargas Adriana , Rojas Jorge , Aivasovsky Ivan , Vergara Sergio , Castellanos Marianna , Prieto Carolina , Celis Luis
Published: November 2020

The KARS gene encodes the aminoacyl-tRNA synthetase (aaRS), which activates and joins lysine with its corresponding transfer RNA (tRNA) through the ATP-dependent aminoacylation of the amino acid. KARS gene mutations have been linked to diverse neurologic phenotypes, such as neurosensorial hearing loss, leukodystrophy, microcephaly, developmental delay or regression, peripheral neuropathy, cardiomyopathy, the impairment of the mitochondrial respiratory chain, and hyperlactatemia, among others. This article presents the case of a Colombian pediatric patient with two pathological missense variants in a compound heterozygous state in the KARS gene and, in addition to the case report, the paper reviews the literature for other cases of KARS1-associated leukodystrophy.
An Update on the Lithogenic Mechanisms of Cholecystokinin a Receptor (CCKAR), an Important Gallstone Gene for Lith13
Authors: Wang Helen H. , Portincasa Piero , Liu Min , Tso Patrick , Wang David Q.-H.
Published: November 2020

The cholecystokinin A receptor (CCKAR) is expressed predominantly in the gallbladder and small intestine in the digestive system, where it is responsible for CCK’s regulation of gallbladder and small intestinal motility. The effect of CCKAR on small intestinal transit is a physiological response for regulating intestinal cholesterol absorption. The CCKAR gene has been identified to be an important gallstone gene, Lith13, in inbred mice by a powerful quantitative trait locus analysis. Knockout of the CCKAR gene in mice enhances cholesterol cholelithogenesis by impairing gallbladder contraction and emptying, promoting cholesterol crystallization and crystal growth, and increasing intestinal cholesterol absorption. Clinical and epidemiological studies have demonstrated that several variants in the CCKAR gene are associated with increased prevalence of cholesterol cholelithiasis in humans. Dysfunctional gallbladder emptying in response to exogenously administered CCK-8 is often found in patients with cholesterol gallstones, and patients with pigment gallstones display an intermediate degree of gallbladder motility defect. Gallbladder hypomotility is also revealed in some subjects without gallstones under several conditions: pregnancy, total parenteral nutrition, celiac disease, oral contraceptives and conjugated estrogens, obesity, diabetes, the metabolic syndrome, and administration of CCKAR antagonists. The physical–chemical, genetic, and molecular studies of Lith13 show that dysfunctional CCKAR enhances susceptibility to cholesterol gallstones through two primary mechanisms: impaired gallbladder emptying is a key risk factor for the development of gallbladder hypomotility, biliary sludge (the precursor of gallstones), and microlithiasis, as well as delayed small intestinal transit augments cholesterol absorption as a major source for the hepatic hypersecretion of biliary cholesterol and for the accumulation of excess cholesterol in the gallbladder wall that further worsens impaired gallbladder motor function. If these two defects in the gallbladder and small intestine could be prevented by the potent CCKAR agonists, the risk of developing cholesterol gallstones could be dramatically reduced.
Does Improvement in Health-Related Lifestyle Habits Increase Purpose in Life among a Health Literate Cohort?
Authors: Kinoshita Shunsuke , Hirooka Nobutaka , Kusano Takeru , Saito Kohei , Nakamoto Hidetomo
Published: November 2020

A growing number of studies have revealed the association between health-related lifestyle habits and purpose in life. However, the mechanism linking the two has not been adequately understood. This study aims to examine the effect of changes in health-related lifestyle habits on purpose in life. A retrospective cohort study was conducted on certified professional specialists of health management. We analyzed the cohort’s demographic information, health-related lifestyle behaviors, reported changes in health-related lifestyle habits (exercise, diet, sleep, and other habits), and purpose in life using a validated tool (Ikigai-9). The cohort was divided into four groups based on the number of reported changes in health-related lifestyles. The purpose in life score was compared among the four groups with and without adjusting for lifestyle. In total, there were 4820 participants. The means (and SD) of the Ikigai-9 score for groups 1, 2, 3, and 4 were 31.4 (6.6), 32.2 (5.6), 32.8 (5.8), and 34.9 (5.4), respectively. There was a statistically significant difference in the Ikigai-9 score among the groups. Healthier changes in lifestyle habits increased perceptions of purpose in life. Both purpose in life and health-related lifestyle habits might be the target factors for disease prevention and health promotion.
Comparison of Spatial Modelling Approaches on PM10 and NO2 Concentration Variations: A Case Study in Surabaya City, Indonesia
Authors: Widya Liadira Kusuma , Hsu Chin-Yu , Lee Hsiao-Yun , Jaelani Lalu Muhamad , Lung Shih-Chun Candice , Su Huey-Jen , Wu Chih-Da
Published: November 2020

Because of fast-paced industrialization, urbanization, and population growth in Indonesia, there are serious health issues in the country resulting from air pollution. This study uses geospatial modelling technologies, namely land-use regression (LUR), geographically weighted regression (GWR), and geographic and temporal weighted regression (GTWR) models, to assess variations in particulate matter (PM10) and nitrogen dioxide (NO2) concentrations in Surabaya City, Indonesia. This is the first study to implement spatiotemporal variability of air pollution concentrations in Surabaya City, Indonesia. To develop the prediction models, air pollution data collected from seven monitoring stations from 2010 to 2018 were used as dependent variables, while land-use/land cover allocations within a 250 m to 5000 m circular buffer range surrounding the monitoring stations were collected as independent variables. A supervised stepwise variable selection procedure was applied to identify the important predictor variables for developing the LUR, GWR, and GTWR models. The developed models of LUR, GWR, and GTWR accounted for 49%, 50%, and 51% of PM10 variations and 46%, 47%, and 48% of NO2 variations, respectively. The GTWR model performed better (R2 = 0.51 for PM10 and 0.48 for NO2) than the other two models (R2 = 0.49–0.50 for PM10 and 0.46–0.47 for NO2), LUR and GWR. In the PM10 model four predictor variables, public facility, industry and warehousing, paddy field, and normalized difference vegetation index (NDVI), were selected during the variable selection procedure. Meanwhile, paddy field, residential area, rainfall, and temperature played important roles in explaining NO2 variations. Because of biomass burning issues in South Asia, the paddy field, which has a positive correlation with PM10 and NO2, was selected as a predictor. By using long-term monitoring data to establish prediction models, this model may better depict PM10 and NO2 concentration variations within areas across Asia.
Kisspeptin Influences the Reproductive Axis and Circulating Levels of microRNAs in Senegalese Sole
Authors: Oliveira Catarina C. V. , Fatsini Elvira , Fernández Ignacio , Anjos Catarina , Chauvigné François , Cerdà Joan , Mjelle Robin , Fernandes Jorge M. O. , Cabrita Elsa
Published: November 2020

Kisspeptin regulates puberty and reproduction onset, acting upstream of the brain–pituitary–gonad (HPG) axis. This study aimed to test a kisspeptin-based hormonal therapy on cultured Senegalese sole (G1) breeders, known to have reproductive dysfunctions. A single intramuscular injection of KISS2-10 decapeptide (250 µg/kg) was tested in females and males during the reproductive season, and gonad maturation, sperm motility, plasma levels of gonadotropins (Fsh and Lh) and sex steroids (11-ketotestosterone, testosterone and estradiol), as well as changes in small non-coding RNAs (sncRNAs) in plasma, were investigated. Fsh, Lh, and testosterone levels increased after kisspeptin injection in both sexes, while sperm analysis did not show differences between groups. Let7e, miR-199a-3p and miR-100-5p were differentially expressed in females, while miR-1-3p miRNA was up-regulated in kisspeptin-treated males. In silico prediction of mRNAs targeted by miRNAs revealed that kisspeptin treatment might affect paracellular transporters, regulate structural and functional polarity of cells, neural networks and intracellular trafficking in Senegalese sole females; also, DNA methylation and sphingolipid metabolism might be altered in kisspeptin-treated males. Results demonstrated that kisspeptin stimulated gonadotropin and testosterone secretion in both sexes and induced an unanticipated alteration of plasma miRNAs, opening new research venues to understand how this neuropeptide impacts in fish HPG axis.
Maternal Malnutrition Affects Hepatic Metabolism through Decreased Hepatic Taurine Levels and Changes in HNF4A Methylation
Authors: Du Ji Eun , You Young Ah , Kwon Eun Jin , Kim Soo Min , Lee Jeongae , Han Ki Hwan , Kim Young Ju
Published: November 2020

Fetal programming implies that the maternal diet during pregnancy affects the long-term health of offspring. Although maternal diet influences metabolic disorders and non-alcoholic fatty liver disease in offspring, the hepatic mechanisms related to metabolites are still unknown. Here, we investigated the maternal diet-related alterations in metabolites and the biological pathway in male offspring at three months of age. Pregnant rats were exposed to 50% food restriction during the prenatal period or a 45% high-fat diet during the prenatal and postnatal periods. The male offspring exposed to food restriction and high-fat diets had lower birth weights than controls, but had a catch-up growth spurt at three months of age. Hepatic taurine levels decreased in both groups compared to controls. The decreased hepatic taurine levels in offspring affected excessive lipid accumulation through changes in hepatocyte nuclear factor 4 A methylation. Moreover, the alteration of gluconeogenesis in offspring exposed to food restriction was observed to a similar extent as that of offspring exposed to a high fat diet. These results indicate that maternal diet affects the dysregulation in hepatic metabolism through changes in taurine levels and HNF4A methylation, and predisposes the offspring to Type 2 diabetes and non-alcoholic fatty liver disease in later life.
Emerging Modes of Treatment of IgA Nephropathy
Authors: Maixnerova Dita , Tesar Vladimir
Published: November 2020

IgA nephropathy is the most common primary glomerulonephritis with potentially serious outcome leading to end stage renal disease in 30 to 50% of patients within 20 to 30 years. Renal biopsy, which might be associated with risks of complications (bleeding and others), still remains the only reliable diagnostic tool for IgA nephropathy. Therefore, the search for non-invasive diagnostic and prognostic markers for detection of subclinical types of IgA nephropathy, evaluation of disease activity, and assessment of treatment effectiveness, is of utmost importance. In this review, we summarize treatment options for patients with IgA nephropathy including the drugs currently under evaluation in randomized control trials. An early initiation of immunosupressive regimens in patients with IgA nephropathy at risk of progression should result in the slowing down of the progression of renal function to end stage renal disease.
CaSBP11 Participates in the Defense Response of Pepper to Phytophthora capsici through Regulating the Expression of Defense-Related Genes
Authors: Zhang Huai-Xia , Feng Xiao-Hui , Jin Jing-Hao , Khan Abid , Guo Wei-Li , Du Xiao-Hua , Gong Zhen-Hui
Published: November 2020

Squamosa promoter binding protein (SBP)-box genes are plant-specific transcription factors involved in plant growth and development, morphogenesis and biotic and abiotic stress responses. However, these genes have been understudied in pepper, especially with respect to defense responses to Phytophthora capsici infection. CaSBP11 is a SBP-box family gene in pepper that was identified in our previous research. Silencing CaSBP11 enhanced the defense response of pepper plants to Phytophthora capsici. Without treatment, the expression of defense-related genes (CaBPR1, CaPO1, CaSAR8.2 and CaDEF1) increased in CaSBP11-silenced plants. However, the expression levels of these genes were inhibited under transient CaSBP11 expression. CaSBP11 overexpression in transgenic Nicotiana benthamiana decreased defense responses, while in Arabidopsis, it induced or inhibited the expression of genes in the salicylic acid and jasmonic acid signaling pathways. CaSBP11 overexpression in sid2-2 mutants induced AtNPR1, AtNPR3, AtNPR4, AtPAD4, AtEDS1, AtEDS5, AtMPK4 and AtNDR1 expression, while AtSARD1 and AtTGA6 expression was inhibited. CaSBP11 overexpression in coi1-21 and coi1-22 mutants, respectively, inhibited AtPDF1.2 expression and induced AtPR1 expression. These results indicate CaSBP11 has a negative regulatory effect on defense responses to Phytophthora capsici. Moreover, it may participate in the defense response of pepper to Phytophthora capsici by regulating defense-related genes and the salicylic and jasmonic acid-mediated disease resistance signaling pathways.
Function and Regulation of the Pyruvate Transporter CstA in Escherichia coli
Authors: Gasperotti Ana , Göing Stephanie , Fajardo-Ruiz Elena , Forné Ignasi , Jung Kirsten
Published: November 2020

Pyruvate is a central metabolite that connects many metabolic pathways in living organisms. To meet the cellular pyruvate requirements, the enterobacterium Escherichia coli has at least three pyruvate uptake systems—the H+/pyruvate symporter BtsT, and two thus far less well-characterized transporters, YhjX and CstA. BtsT and CstA belong to the putative carbon starvation (CstA) family (transporter classification TC# 2.A.114). We have created an E. coli mutant that cannot grow on pyruvate as the sole carbon source and used it to characterize CstA as a pyruvate transporter. Transport studies in intact cells confirmed that CstA is a highly specific pyruvate transporter with moderate affinity and is energized by a proton gradient. When cells of a reporter strain were cultured in complex medium, cstA expression was maximal only in stationary phase. A DNA affinity-capture assay combined with mass spectrometry and an in-vivo reporter assay identified Fis as a repressor of cstA expression, in addition to the known activator cAMP-CRP. The functional characterization and regulation of this second pyruvate uptake system provides valuable information for understanding the complexity of pyruvate sensing and uptake in E. coli.
Zinc Binds to RRM2 Peptide of TDP-43
Authors: Golovin Andrey V. , Devred Francois , Yatoui Dahbia , Roman Andrei Yu. , Zalevsky Arthur O. , Puppo Remy , Lebrun Regine , Guerlesquin Francoise , Tsvetkov Philipp O.
Published: November 2020

Transactive response DNA and RNA binding protein 43 kDa (TDP-43) is a highly conserved heterogeneous nuclear ribonucleoprotein (hnRNP), which is involved in several steps of protein production including transcription and splicing. Its aggregates are frequently observed in motor neurons from amyotrophic lateral sclerosis patients and in the most common variant of frontotemporal lobar degeneration. Recently it was shown that TDP-43 is able to bind Zn2+ by its RRM domain. In this work, we have investigated Zn2+ binding to a short peptide 256–264 from C-terminus of RRM2 domain using isothermal titration calorimetry, electrospray ionization mass spectrometry, QM/MM simulations, and NMR spectroscopy. We have found that this peptide is able to bind zinc ions with a Ka equal to 1.6 × 105 M−1. Our findings suggest the existence of a zinc binding site in the C-terminal region of RRM2 domain. Together with the existing structure of the RRM2 domain of TDP-43 we propose a model of its complex with Zn2+ which illustrates how zinc might regulate DNA/RNA binding.
Do TUNEL and Other Apoptosis Assays Detect Cell Death in Preclinical Studies?
Authors: Mirzayans Razmik , Murray David
Published: November 2020

The terminal deoxynucleotidyl transferase-mediated dUTP nick end labeling (TUNEL) assay detects DNA breakage by labeling the free 3ʹ-hydroxyl termini. Given that genomic DNA breaks arise during early and late stages of apoptosis, TUNEL staining continues to be widely used as a measure of apoptotic cell death. The advantages of the assay include its relative ease of performance and the broad availability of TUNEL assay kits for various applications, such as single-cell analysis of apoptosis in cell cultures and tissue samples. However, as briefly discussed herein, aside from some concerns relating to the specificity of the TUNEL assay itself, it was demonstrated some twenty years ago that the early stages of apoptosis, detected by TUNEL, can be reversed. More recently, compelling evidence from different biological systems has revealed that cells can recover from even late stage apoptosis through a process called anastasis. Specifically, such recovery has been observed in cells exhibiting caspase activation, genomic DNA breakage, phosphatidylserine externalization, and formation of apoptotic bodies. Furthermore, there is solid evidence demonstrating that apoptotic cells can promote neighboring tumor cell repopulation (e.g., through caspase-3-mediated secretion of prostaglandin E2) and confer resistance to anticancer therapy. Accordingly, caution should be exercised in the interpretation of results obtained by the TUNEL and other apoptosis assays (e.g., caspase activation) in terms of apoptotic cell demise.
Nitrogen Starvation and Stationary Phase Lipophagy Have Distinct Molecular Mechanisms
Authors: Kumar Ravinder , Rahman Muhammad Arifur , Nazarko Taras Y.
Published: November 2020

In yeast, the selective autophagy of intracellular lipid droplets (LDs) or lipophagy can be induced by either nitrogen (N) starvation or carbon limitation (e.g., in the stationary (S) phase). We developed the yeast, Komagataella phaffii (formerly Pichia pastoris), as a new lipophagy model and compared the N-starvation and S-phase lipophagy in over 30 autophagy-related mutants using the Erg6-GFP processing assay. Surprisingly, two lipophagy pathways had hardly overlapping stringent molecular requirements. While the N-starvation lipophagy strictly depended on the core autophagic machinery (Atg1-Atg9, Atg18, and Vps15), vacuole fusion machinery (Vam7 and Ypt7), and vacuolar proteolysis (proteinases A and B), only Atg6 and proteinases A and B were essential for the S-phase lipophagy. The rest of the proteins were only partially required in the S-phase. Moreover, we isolated the prl1 (for the positive regulator of lipophagy 1) mutant affected in the S-phase lipophagy, but not N-starvation lipophagy. The prl1 defect was at a stage of delivery of the LDs from the cytoplasm to the vacuole, further supporting the mechanistically different nature of the two lipophagy pathways. Taken together, our results suggest that N-starvation and S-phase lipophagy have distinct molecular mechanisms.
Inhibition of EphA2 by Dasatinib Suppresses Radiation-Induced Intestinal Injury
Authors: Kim Areumnuri , Seong Ki Moon , Choi You Yeon , Shim Sehwan , Park Sunhoo , Lee Seung Sook
Published: November 2020

Radiation-induced multiorgan dysfunction is thought to result primarily from damage to the endothelial system, leading to a systemic inflammatory response that is mediated by the recruitment of leukocytes. The Eph–ephrin signaling pathway in the vascular system participates in various disease developmental processes, including cancer and inflammation. In this study, we demonstrate that radiation exposure increased intestinal inflammation via endothelial dysfunction, caused by the radiation-induced activation of EphA2, an Eph receptor tyrosine kinase, and its ligand ephrinA1. Barrier dysfunction in endothelial and epithelial cells was aggravated by vascular endothelial–cadherin disruption and leukocyte adhesion in radiation-induced inflammation both in vitro and in vivo. Among all Eph receptors and their ligands, EphA2 and ephrinA1 were required for barrier destabilization and leukocyte adhesion. Knockdown of EphA2 in endothelial cells reduced radiation-induced endothelial dysfunction. Furthermore, pharmacological inhibition of EphA2–ephrinA1 by the tyrosine kinase inhibitor dasatinib attenuated the loss of vascular integrity and leukocyte adhesion in vitro. Mice administered dasatinib exhibited resistance to radiation injury characterized by reduced barrier leakage and decreased leukocyte infiltration into the intestine. Taken together, these data suggest that dasatinib therapy represents a potential approach for the protection of radiation-mediated intestinal damage by targeting the EphA2–ephrinA1 complex.
Morquio B Disease. Disease Characteristics and Treatment Options of a Distinct GLB1-Related Dysostosis Multiplex
Authors: Yuskiv Nataliya , Higaki Katsumi , Stockler-Ipsiroglu Sylvia
Published: November 2020

Morquio B disease (MBD) is an autosomal recessive GLB1-gene-related lysosomal storage disease, presenting with a peculiar type of dysostosis multiplex which is also observed in GALNS-related Morquio A disease. MBD may present as pure skeletal phenotype (pure MBD) or in combination with the neuronopathic manifestations seen in type 2 (juvenile) or type 3 (late onset) GM1 gangliosidosis (MBD plus). The main skeletal features are progressive growth impairment, kyphoscoliosis, coxa/genua valga, joint laxity, platyspondyly and odontoid hypoplasia. The main neuronopathic features are dystonia, ataxia, and intellectual/developmental/speech delay. Spinal cord compression occurs as a complication of spinal dysostosis. Chronic pain is reported, along with mobility issues and challenges with daily living and self-care activities, as the most common health concern. The most commonly reported orthopedic surgeries are hip and knee replacements. Keratan sulphate-derived oligosaccharides are characteristic biomarkers. Residual β-galactosidase activities measured against synthetic substrates do not correlate with the phenotype. W273 L and T500A are the most frequently observed GLB1 variants in MBD, W273L being invariably associated with pure MBD. Cytokines play a role in joint destruction and pain, providing a promising treatment target. In the future, patients may benefit from small molecule therapies, and gene and enzyme replacement therapies, which are currently being developed for GM1 gangliosidosis.
Future-Aware Trend Alignment for Sales Predictions
Authors: Liu Yiwei , Feng Lin , Jin Bo
Published: November 2020

Accurately forecasting sales is a significant challenge faced by almost all companies. In particular, most products have short lifecycles without the accumulation of historical sales data. Existing methods either fail to capture the context-specific, irregular trends or to integrate as much information as is available in the face of a data scarcity problem. To address these challenges, we propose a new model, called F-TADA, i.e., future-aware TADA, which is derived from trend alignment with dual-attention multi-task recurrent neural networks (TADA). We utilize two real-world supply chain sales data sets to verify our algorithm’s performance and effectiveness on both long and short lifecycles. The experimental results show that the accuracy of the F-TADA is better than the original model. Our model’s performance could be further improved, however, by appropriately increasing the length of the windows in the decoding stage. Finally, we develop a sales data prediction and analysis decision-making system, which can offer intelligent sales guidance to enterprises.
Early-Stage Detection of Cyber Attacks
Authors: Pivarníková Martina , Sokol Pavol , Bajtoš Tomáš
Published: November 2020

Nowadays, systems around the world face many cyber attacks every day. These attacks consist of numerous steps that may occur over an extended period of time. We can learn from them and use this knowledge to create tools to predict and prevent the attacks. In this paper, we introduce a way to sort cyber attacks in stages, which can help with the detection of each stage of cyber attacks. In this way, we can detect the earlier stages of the attack. We propose a solution using Bayesian network algorithms to predict how the attacks proceed. We can use this information for more effective defense against cyber threats.
SyrAgri: A Recommender System for Agriculture in Mali
Authors: Konaté Jacqueline , Diarra Amadou G. , Diarra Seydina O. , Diallo Aminata
Published: November 2020

This paper focuses on recommender system for agriculture in Mali called SyrAgri. The goal is to guide and improve the quality-of-experience of farmers by offering them good farming practices according to their needs. Two types of recommendations are essentially taken into account: the recommendation of crops and the recommendation of farming practices based on some predefined criteria which are: yield, life cycle of the crop, type of soil, growing season, etc. SyrAgri also informs farmers about crop rotation and the similarity between different types of crops based on the following parameters: crop families, growing seasons and appropriate soil types. For the development of this system a hybrid recommendation approach was used: demographic, semantic and collaborative methods. Each method is adapted to a specific stage of a user’s visit to the system. The demographic approach is first activated in order to offer recommendations to new users of the system, which resolves the concept of cold start (immediate inclusion of a new item or a new user in the system). The semantic approach is then activated to recommend to the user items (crops, agricultural practices) semantically close to those (s)he has appreciated. Finally, the collaborative approach is used to recommend items that similar users have liked.
Seismic Resistant Bridge Columns with NiTi Shape Memory Alloy and Ultra-High-Performance Concrete
Authors: Aryan Hadi
Published: November 2020

Reinforced concrete bridge columns often endure significant damages during earthquakes due to the inherent deficiencies of conventional materials. Superior properties of the new materials such as shape memory alloy (SMA) and ultra-high-performance concrete (UHPC), compared to the reinforcing steel and the normal concrete, respectively, are needed to build a new generation of seismic resistant columns. Application of SMA or UHPC in columns has been separately studied, but this paper aims to combine the superelastic behavior of NiTi SMA and the high strength of UHPC, in order to produce a column design with minimum permanent deformation and high load tolerance subjected to strong ground motions. Additionally, the excellent corrosion resistance of NiTi SMA and the dense and impermeable microstructure of UHPC ensure the long-term durability of the proposed earthquake resistant column design. The seismic performance of four columns, defined as steel reinforced concrete (S-C), SMA reinforced concrete (SMA-C), SMA reinforced UHPC (SMA-UHPC), and reduced SMA reinforced UHPC (R-SMA-UHPC) is analyzed through a loading protocol with up to 4% drift cycles. The use of NiTi SMA bars for the SMA reinforced columns is limited to the plastic hinge region where permanent deformations happen. All the columns have 2.0% reinforcement ratio, except the R-SMA-UHPC column that has a 1.33% reinforcement ratio to optimize the use of SMA bars. Unlike the S-C column that showed up to 68% residual deformation compared to peak displacement during the last loading cycle the SMA reinforced columns did not experience permanent deformation. The SMA-C and R-SMA-UHPC columns showed similar strengths to the S-C column, but with about 5.0- and 6.5-times larger ductility, respectively. The SMA-UHPC column showed 30% higher strength and 7.5 times larger ductility compared to the S-C column.
Storage of Cereals in Warehouses with or without Pesticides
Authors: Hamel Darka , Rozman Vlatka , Liška Anita
Published: November 2020

At a time when there is much talk of reducing pesticide use and the implementation of integrated pest management, mainly in fields and glass-houses, it is appropriate to consider how cereals in storage are handled and what measures are taken to protect them against insects and other pests. For decades, the use of various synthetic pesticides has been the basis for the proper and long-term storage of cereals, primarily free of insects and mites, but also fungi and their mycotoxins and rodents. However, due to the registered negative effects of synthetic pesticides, such as dichloro-diphenyl-trihloroethane (DDT) or methyl bromide, on human health and the environment, and the appearance of resistance to, e.g., malathion, researchers have been looking for new acceptable control measures. Due to the proven and published non-acceptable data regarding synthetic pesticide effects, a combination of physical, mechanical, and biological measures with the minimal use of synthetic pesticides, under the name of integrated pest management, have been promoted. These combinations include high and low temperatures; the removal of dockages; and the application of pheromones, diatomaceous earth, and natural compounds from various plants, as well as inert gases, predators, and parasites. A ban of any synthetic pesticide usage is currently being considered, which emphasizes the fact that protection should only be performed by measures that do not leave harmful residues. However, the facts show that the application of physical, mechanical, and/or biological measures, besides the fact that they are not necessarily efficient, is very demanding because more knowledge and experience is required, as well as better equipment, greater financial investment, and awareness raising not only for agricultural producers and storage keepers, but also for consumers. In order to use these measures, which are less hazardous to humans and the environment, it is necessary to adapt regulations not only to speed up the registration protocols of low-risk pesticides, but also to prescribe criteria for placing agricultural products on the market, as well as quality standards, i.e., the permitted number of present insects, in addition to their parts in certain types of food. Additionally, we should be aware of control measures for protecting novel food and other non-traditional foods. It is important to continue to combine different protection measures, namely integrated pest management, until all of the other new procedures that must be carried out during the period of storing cereals and other products are clear, in order to ensure the best quality of final products for consumers.
A Literature Review of Host Feeding Patterns of Invasive Aedes Mosquitoes in Europe
Authors: Cebrián-Camisón Sonia , Martínez-de la Puente Josué , Figuerola Jordi
Published: November 2020

Aedes invasive mosquitoes (AIMs) play a key role as vectors of several pathogens of public health relevance. Four species have been established in Europe, including Aedes aegypti, Aedesalbopictus, Aedes japonicus and Aedes koreicus. In addition, Aedes atropalpus has been repeatedly recorded although it has not yet been established. In spite of their importance in the transmission of endemic (e.g., heartworms) and imported pathogens (e.g., dengue virus), basic information of parameters affecting their vectorial capacity is poorly investigated. The aim of this study is to review the blood feeding patterns of these invasive mosquito species in Europe, summarizing available information from their native and introduced distribution ranges. The feeding patterns of mosquitoes constitute a key parameter affecting the contact rates between infected and susceptible hosts, thus playing a central role in the epidemiology of mosquito-borne pathogens. Our results highlight that these mosquito species feed on the blood of different vertebrate groups from ectotherms to birds and mammals. However, humans represent the most important source of blood for these species, accounting for 36% and 93% of hosts identified for Ae. japonicus and Ae. aegypti, respectively. In spite of that, limited information has been obtained for some particular species, such as Ae. koreicus, or it is restricted to a few particular areas. Given the high vector competence of the four AIM species for the transmission of different emerging arboviruses such as dengue, Chikungunya, Zika or Yellow fever viruses and their high feeding rates on humans, these AIM species may have an important impact on the vectorial capacity for such pathogens on urban and periurban areas. Finally, we propose directions for future research lines based on identified knowledge gaps.
Recent Advances in Preparation, Mechanisms, and Applications of Thermally Conductive Polymer Composites: A Review
Authors: Zhang Hao , Zhang Xiaowen , Fang Zhou , Huang Yao , Xu Hong , Liu Ying , Wu Daming , Zhuang Jian , Sun Jingyao
Published: November 2020

At present, the rapid accumulation of heat and the heat dissipation of electronic equipment and related components are important reasons that restrict the miniaturization, high integration, and high power of electronic equipment. It seriously affects the performance and life of electronic devices. Hence, improving the thermal conductivity of polymer composites (TCPCs) is the key to solving this problem. Compared with manufacturing intrinsic thermally conductive polymer composites, the method of filling the polymer matrix with thermally conductive fillers can better-enhance the thermal conductivity (λ) of the composites. This review starts from the thermal conduction mechanism and describes the factors affecting the λ of polymer composites, including filler type, filler morphology and distribution, and the functional surface treatment of fillers. Next, we introduce the preparation methods of filled thermally conductive polymer composites with different filler types. In addition, some commonly used thermal-conductivity theoretical models have been introduced to better-analyze the thermophysical properties of polymer composites. We discuss the simulation of λ and the thermal conduction process of polymer composites based on molecular dynamics and finite element analysis methods. Meanwhile, we briefly introduce the application of polymer composites in thermal management. Finally, we outline the challenges and prospects of TCPCs.