bluuebunny/crossref_metadata_2025 huggingface dataset:
Geospatial assessment of the cost and energy demand of feedstock grinding for enhanced rock weathering in the coterminous United States
Authors: Li Zijian , Planavsky Noah J. , Reinhard Christopher T.
Published: August 2024

In an effort to mitigate anthropogenic climate impacts the U.S. has established ambitious Nationally Determined Contribution (NDC) targets, aiming to reduce greenhouse gas emissions by 50% before 2030 and achieving net-zero emissions by 2050. Enhanced rock weathering (ERW)—the artificial enhancement of chemical weathering of rocks to accelerate atmospheric CO2 capture—is now widely seen as a potentially promising carbon dioxide removal (CDR) strategy that could help to achieve U.S. climate goals. Grinding rocks to smaller particle size, which can help to facilitate more rapid and efficient CO2 removal, is the most energy-demanding and cost-intensive step in the ERW life cycle. As a result, accurate life cycle analysis of ERW requires regional constraints on the factors influencing the energetic and economic demands of feedstock grinding for ERW. Here, we perform a state-level geospatial analysis to quantify how carbon footprints, costs, and energy demands vary among regions of the coterminous U.S. in relation to particle size and regional electricity mix. We find that CO2 emissions from the grinding process are regionally variable but relatively small compared to the CDR potential of ERW, with national averages ranging between ~5–35 kgCO2 trock−1 for modal particle sizes between ~10–100 μm. The energy cost for feedstock grinding also varies regionally but is relatively small, with national average costs for grinding of roughly 0.95–5.81 $ trock−1 using grid mix power and 1.35–8.26 $ trock−1 (levelized) for solar PV for the same particle size range. Overall energy requirements for grinding are also modest, with the demand for grinding 1 Gt of feedstock representing less than 2% of annual national electricity supply. In addition, both cost and overall energy demand are projected to decline over time. These results suggest that incorporating feedstock grinding into ERW deployment at scale in the coterminous U.S. should generally have only modest impacts on lifecycle emissions, cost-effectiveness, and energy efficiency.
A systematic review of a novel alloplast carbonate apatite granules
Authors: Nunn Martha E. , Rudick Courtney , Nikaido Masahiko , Miyamoto Takanari
Published: August 2024

The objectives of this study are to provide a systematic review of a novel alloplastic hard-tissue grafting material, carbonate apatite granules (CO3Ap-granules), to provide a clinical case presentation of CO3Ap-granules in periodontal surgery. The following three electronic databases were searched independently by two of the authors (MN) and (CR): National Library of Medicine [MEDLINE (PubMed) and ClinicalTrials.gov], EMBASE (OVID) and the Cochrane Central Register of Controlled Trials (CENTRAL). After searching electronic databases, select journals in periodontics and implantology were also manually searched. Of the 43 studies identified from the systematic review, the following classifications were determined: (1) in vitro studies – 5 studies, (2) animal studies – 28 studies, (3) clinical studies – 7 studies, (4) reviews – 3 studies. Results from selected animal studies and all human studies were summarized. These results demonstrate that the novel alloplast CO3Ap-granules has the potential ability to stimulate new bone formation while CO3Ap-granules simultaneously resorb over time. Replacement of CO3Ap-granules with new bone formation has been shown to be comparable to autogenous bone grafting with one study showing superior results to a bovine-derived xenograft.
Internal erosion process and its influence factors in widely graded loose soils due to rainfall infiltration
Authors: Liang Li , Tian Da-Lang , Li Zheng-Chuan
Published: August 2024

Compared with engineering materials for earth structures subjected to prolonged, sustained hydraulic loading, the internal erosion process of widely graded loose soils (WGLS) under short-term, fluctuating hydraulic loading conditions remains insufficiently elucidated. Therefore, a novel fixed-wall permeameter is developed, capable of applying hydraulic loading at a constant flow rate and collecting effluent flowing out of specimens. A testing protocol is proposed to separate eroded silty clay particles, sandy gravel particles, and seepage water from the collected effluent. Several seepage tests are conducted on remolded specimens with various initial porosity at different inflow rates. The test results show that under a constant inflow rate, the WGLS specimens may undergo suffusion, suffosion, and stabilization stages while seeking the ultimate equilibrium state. The proposed particle migration pattern adeptly reveals the microscale mechanisms of the internal erosion phenomena observed at different stages. The inflow rate is independent of the suffusion critical hydraulic gradient but impacts the suffosion critical hydraulic gradient and internal erosion behavior following suffusion. Because hydraulic shear stress is a comprehensive indicator that considers both hydraulic gradient and initial porosity, it is more appropriate to use it to evaluate the internal stability potential of WGLS.
Reducing isolation for educators through ECHO virtual communities of practice
Authors: Dickson Elizabeth , Lardier David T. , Verdezoto Carolina S. , Hackett Janna M.
Published: August 2024

Introduction

Students in U.S. rural schools experience lower educational outcomes than their urban peers related to social determinants of health such as under resourced schools, shortages of qualified teachers and staff, and high poverty levels. Geographic, social, or professional isolation in rural communities can compound these disparities by contributing to high turnover of educators and staff. Virtual communities of practice (VCoPs) can address the needs of individuals in remote and rural communities. However, it is critical to understand if VCoPs meet rural school staff needs to support their students. Wenger’s Community of Practice (CoP) framework and the Project ECHO model for VCoPs guided this descriptive, qualitative arm of our study to explore experiences of school staff participating in VCoPs through Project ECHO.

Methods

Thirteen ECHO for Education participants joined virtual focus groups to discuss their experiences and perspectives of VCoPs. Interview transcripts were inductively coded using the CoP framework with enhanced rigor through audit trails and member checking.

Results

Four predominant themes emerged from the interviews: 1) belonging/connected with others; 2) reduced sense of isolation; 3) exchange of new ideas/knowledge; and 4) sense of collaboration. Participants described how the VCoP they participated in resulted in positive professional and personal experiences including the support offered in context of working in rural schools during the COVID 19 pandemic.

Discussion

VCoPs can establish supportive professional networks for rural school staff working with students in under-resourced settings. Our theoretically-grounded results substantiate VCoP development as a systems-level approach to facilitate professional collaboration, mitigate staff turnover, diminish professional isolation, and support students in rural communities.
Oncocytic cell carcinoma of the thyroid with TERT promoter mutation presenting as asphyxia in an elderly: a case report
Authors: Wang Xiqian , Liu Yingao , Chen Lijie , Zhang Jie , Jiang Ruoyu , Zhang Lei , Yan Han , Zhang Jie
Published: August 2024

Introduction

The prevalence of thyroid nodules and malignancies in the elderly is a growing concern. Thyroid nodules in this population have unique characteristics, requiring careful treatment strategies that balance risks and benefits. Oncocytic carcinoma of the thyroid (OCA) is a rare, aggressive subtype with diagnostic challenges.

Methods

This case features an 84-year-old patient who presented with a neck mass and symptoms of asphyxia. Clinical evaluation, imaging studies, and biopsy were conducted to assess the nature of the thyroid lesion. Molecular testing, including genetic analysis, was performed to identify specific mutations associated with OCA and guide treatment decisions.

Results

The patient was diagnosed with oncocytic carcinoma of the thyroid. The molecular testing revealed specific genetic mutations indicative of OCA, confirming the diagnosis. The presence of these mutations guided the treatment plan, emphasizing the importance of molecular diagnostics in managing thyroid malignancies, especially in the elderly.

Discussion

This case illustrates the complexities of diagnosing and treating thyroid malignancies in the elderly. Biopsy and molecular testing provided diagnostic accuracy and informed treatment. Individualized approaches are essential for better outcomes, especially in aggressive subtypes, balancing the risks and benefits of intervention.
Incidence of bronchiectasis in patients with acromegaly: a cohort study
Authors: Gil Hyun-Il , Han Kyungdo , Hong Sangmo , Park Cheol-Young
Published: August 2024

Objective

Associations between acromegaly and several respiratory diseases, such as obstructive lung disease or sleep apnea, have been suggested, but the relationship between bronchiectasis and acromegaly is unclear. We investigated whether acromegaly is related to the development of bronchiectasis.

Materials and methods

Using the Korean National Health Insurance System database between 2006 and 2016, we studied the relationship between acromegaly and bronchiectasis in patients with acromegaly (n=2593) and controls (1:5 age- and sex-matched subjects without acromegaly, n=12965) with a mean follow-up period of 8.9 years. Cox proportional hazards regression analysis was used to assess the risk of bronchiectasis in patients with acromegaly compared with controls after adjusting for age, sex, household income, place, type 2 diabetes, hypertension, and dyslipidemia.

Results

The mean age of the participants was 47.65 years, and male subjects comprised 45.62% of the cohort. The incidence rate of bronchiectasis in patients with acromegaly was 3.64 per 1,000 person-years and was significantly higher than that in controls (2.47 per 1,000 person-years) (log-rank test p = 0.002). In multivariable Cox proportional hazards regression modeling, the risk of bronchiectasis was significantly higher in patients with acromegaly than that in controls (HR: 1.49; 95% CI: 1.15–1.94, p = 0.0025) after adjusting for age, sex, household income, place, type 2 diabetes, hypertension, and dyslipidemia.

Conclusions

Our results suggest that acromegaly may be associated with bronchiectasis.
Global research trends and hotspots of oxidative stress in diabetic retinopathy (2000-2024)
Authors: Du Kejie , Liu Yichong , Zhao Xintong , Wang Haowen , Wan Xiaomei , Sun Xiaoyan , Luo Wenjuan
Published: August 2024

Introduction

Oxidative stress has been identified as a major contributor to the pathogenesis of DR, and many diagnostic and therapeutic strategies have been developed to target oxidative stress. Our aim was to understand the contribution of the country of origin of the publication, the institution, the authors, and the collaborative relationship between them.

Methods

We performed a bibliometric analysis to summarize and explore the research hotspots and trends of oxidative stress in the DR.

Results

We observe an upward trend in the number of posts on related topics from year to year. Expanding on this, Queens University Belfast is the most influential research institution. Current research hotspots and trends focus on the mechanism of autophagy and NLRP3 inflammasome's role in oxidative stress in DR.

Discussion

We conducted a multi-dimensional analysis of the research status of oxidative stress in diabetic retinopathy through bibliometric analysis, and proposed possible future research trends and hotspots.
Integrated energy system planning for a heavy equipment manufacturing industrial park
Authors: Chen Dongkun , Cui Qiushi , Li Dongdong , Ren Panqiu
Published: August 2024

This paper intends to provide key insights to the manufacturing industrial park designers for selecting the typical days of electric load and planning the resources for energy-producing infrastructure. First, a hybrid time-series model of energy-consuming equipment based on the autoregressive integral moving average model (ARIMA) and temporal convolutional network (TCN) is generated. According to this model, the energy consumption (EC) curve of large equipment in the industrial park can be depicted. Moreover, the present study designed a TLSM-IPML (typical load stratification method for industrial parks with manufacturing load) algorithm based on the typical day-selected method. The data clustering method is utilized to analyze the energy usage characteristics. Furthermore, an energy usage-based planning model is proposed, network constraints are considered, and a multi-optional method is designed to solve the problem. Finally, case studies validate the superior performance of TLSM-IPML in analyzing the characteristics of energy consumption and planning the model in reducing MES (manufacturing industrial factory integrated energy system) economic costs.
Projected distribution and dispersal patterns of prevalent ticks and tick-borne pathogens in the Sanjiangyuan area of Qinghai province, China, under intense climatic conditions
Authors: Xu Luyao , Guo Yunhai , Yang Limin , Li Zengkui , Kang Ming , Han Xiaoling , Chen Changjiang , He Shunfu , Hu Xiaoyu , He Yongcai , Wang Yuezhong , Li Zhongyu , Chen Jiyong , Geng Pengcheng , Chen Qiang , Jiang Shuo , Ma Jinghua , Zhang Xiao , Tai Ximei , Li Ying
Published: August 2024

Introduction: The Maximum Entropy models (MaxEnt) is commonly employed for early detection of disease transmission, particularly effective in assessing the risk zones and intensity of tick-borne disease transmission based on climatic factors.

Methods: Utilizing the diversity data of common ticks in Qinghai, along with surveillance statistics tick-borne pathogens of ticks and epidemiological information, we have charted and predicted the prevalence of tick and tick-borne pathogens across Qinghai province.

Results and Discussion: The findings indicate that the pivotal environmental factors influencing the distribution of ticks and tick-borne pathogens include land use and land cover (Lucc), elevation (Elev), annual precipitation (Bio12) and annual mean temperature (Bio1). Notably, for Dermacentor nuttalli, the significant environmental factors accounted for 35.2% for Lucc, 24.7% for Elev and 18.6% for Bio12. In the case of Dermacentor silvaru, the pivotal factors contributed 33.2% for Lucc, 23.7% for Elev and 22.6% for Bio1. For Haemaphysalis qinghaiensis, the key environmental variables were 45% for Elev, 30.9% for Lucc and 18.4% for Bio12. Regarding the pathogens, the environmental factors influencing Borrelia burgdorferi contributed 61.5% for Lucc, 13.3% for Elev and 11.9% for Bio1. For Piroplasmida, the contribution was 62.1% for Lucc, 16.7% for Bio1 and 9.9% for Bio12. Rickettsia was influenced by factors accounting for 34.2% for Lucc, 29.7% for Elev and 17.3% for Bio12, while Anaplasma variables contributed 38.2% for Bio1, 26.6% for Lucc and 18.9% for Bio12. The finding indicated that the three predominantly ticks species (D. nuttalli, D. silvaru, and H. qinghaiensis) and the primary tick-borne pathogens (B. burgdorferi, Piroplasmida, Rickettsia, and Anaplasma) are predominantly concentrated in the source regions of the Yellow River, the Yangtze River, the Lancang River, and the eastern part of the Haixi Autonomous Prefecture. Projected under the ssp245 scenario, there is a notable expansion trend in the risk areas for ticks and tick-borne pathogens These findings are consistent with previous epidemiological studies on major ticks and tick-borne diseases in Qinghai conducted by our laboratory, this suggests the feasibility of using the MaxEnt model to predict the distribution of tick-borne disease transmission and compensates for the paucity of research on the Maxent model in the Qinghai Province.
Diel and annual rhythms of tropical stem size changes in the Mayombe forest, Congo Basin
Authors: Luse Belanganayi Basile , Ilondea Bhely Angoboy , Phaka Christophe Mbungu , Laurent Félix , Djiofack Brice Y. , Kafuti Chadrack , Peters Richard L. , Bourland Nils , Beeckman Hans , De Mil Tom
Published: August 2024

Introduction

The Congo Basin forests, a crucial global carbon sink, are expected to face increased challenges of climate change by 2027, with an expected temperature rise of 1.5°C above pre-industrial levels, accompanied by increased humidity conditions. However, studies that try to understand their functioning and untangle the species-specific responses about how weather conditions impact secondary growth dynamics are still rare.

Methods

Here we present the results of a study on diel and annual stem growth in 17 trees, belonging to 11 most abundant species, both canopy and understory, in the Mayombe forest (Congo Basin) in the Democratic Republic of the Congo (DRC). We measured highly-resolved radial stem size variations and weather conditions, to comprehend the ongoing patterns of secondary growth and examine the potential influence of projected weather conditions on them.

Results

We found that at the diel scale, trees probably grow mainly from 6pm to 9am, and that at the annual scale, they grow mainly during the rainy season, from October to May. Some trees grow year-round, while others stop growing for a period ranging from 1 to 4 months. This growth cessation typically occurs during the dry season from June to September. A generalized linear mixed-effect model revealed that annual radial stem growth is positively related to rainfall.

Discussion

Our results suggest that trees in the study site have a significant potential to cope with the projected 1.5°C increase in global temperature and an additional 50 mm of local rainfall. Trees of the species T. superba exhibited improved growth under the projected scenarios. For the other tree species, no significant difference in growth was observed between the predicted and observed scenarios. We believe that much remains to be done to better understand the tree growth-climate interaction of the large variety of tree species in the Congo Basin.
Classification and spatio-temporal evolution analysis of coastal wetlands in the Liaohe Estuary from 1985 to 2023: based on feature selection and sample migration methods
Authors: Ke Lina , Tan Qin , Lu Yao , Wang Quanming , Zhang Guangshuai , Zhao Yu , Wang Lei
Published: August 2024

Coastal wetlands are important areas with valuable natural resources and diverse biodiversity. Due to the influence of both natural factors and human activities, the landscape of coastal wetlands undergoes significant changes. It is crucial to systematically monitor and analyze the dynamic changes in coastal wetland cover over a long-term time series. In this paper, a long-term time series coastal wetland remote sensing classification process was proposed, which integrated feature selection and sample migration. Utilizing Google Earth Engine (GEE) and Landsat TM/ETM/OLI remote sensing image data, the selected feature set is combined with the sample migration method to generate the training sample set for each target year. The Simple Non-Iterative Clustering-Random Forest (SNIC-RF) model was ultimately employed to accurately map wetland classes in the Liaohe Estuary from 1985 to 2023 and quantitatively evaluate the spatio-temporal pattern change characteristics of wetlands in the study area. The findings indicate that: (1) After feature selection, the accuracy of the model reached 0.88, and the separation of the selected feature set was good. (2) After sample migration, the overall accuracy of sample classification in the target year ranged from 87 to 94%, along with Kappa coefficients of 0.84 to 0.92, thereby ensuring the validity of classification sample migration. (3) SNIC-RF classification results showed better performance of wetland landscape. Compared with RF classification, the overall classification accuracy was increased by 0.69–5.82%, and the Kappa coefficient was increased by 0.0087–0.0751. (4) From 1985 to 2023, there has been a predominant trend of natural wetlands being converted into artificial wetlands. In recent years, this transition has occurred more gently. Finally, this study offers valuable insights into understanding changes and trends in the surface ecological environment of the Liaohe Estuary. The research method can be extended to other types of wetland classification and the comprehensive application of coastal wetland in hydrology, ecology, meteorology, soil, and environment can be further explored on the basis of this research, laying strong groundwork for shaping policies on ecological protection and restoration.
Dual-RNA-sequencing to elucidate the interactions between sorghum and Colletotrichum sublineola
Authors: Vela Saddie , Wolf Emily S. A. , Rollins Jeffrey A. , Cuevas Hugo E. , Vermerris Wilfred
Published: August 2024

In warm and humid regions, the productivity of sorghum is significantly limited by the fungal hemibiotrophic pathogen Colletotrichum sublineola, the causal agent of anthracnose, a problematic disease of sorghum (Sorghum bicolor (L.) Moench) that can result in grain and biomass yield losses of up to 50%. Despite available genomic resources of both the host and fungal pathogen, the molecular basis of sorghum−C. sublineola interactions are poorly understood. By employing a dual-RNA sequencing approach, the molecular crosstalk between sorghum and C. sublineola can be elucidated. In this study, we examined the transcriptomes of four resistant sorghum accessions from the sorghum association panel (SAP) at varying time points post-infection with C. sublineola. Approximately 0.3% and 93% of the reads mapped to the genomes of C. sublineola and Sorghum bicolor, respectively. Expression profiling of in vitro versus in planta C. sublineola at 1-, 3-, and 5-days post-infection (dpi) indicated that genes encoding secreted candidate effectors, carbohydrate-active enzymes (CAZymes), and membrane transporters increased in expression during the transition from the biotrophic to the necrotrophic phase (3 dpi). The hallmark of the pathogen-associated molecular pattern (PAMP)-triggered immunity in sorghum includes the production of reactive oxygen species (ROS) and phytoalexins. The majority of effector candidates secreted by C. sublineola were predicted to be localized in the host apoplast, where they could interfere with the PAMP-triggered immunity response, specifically in the host ROS signaling pathway. The genes encoding critical molecular factors influencing pathogenicity identified in this study are a useful resource for subsequent genetic experiments aimed at validating their contributions to pathogen virulence. This comprehensive study not only provides a better understanding of the biology of C. sublineola but also supports the long-term goal of developing resistant sorghum cultivars.
Good manufacturing practice-grade generation of CD19 and CD123-specific CAR-T cells using piggyBac transposon and allogeneic feeder cells in patients diagnosed with B-cell non-Hodgkin lymphoma and acute myeloid leukemia
Authors: Mucha Martin , Štach Martin , Kaštánková Iva , Rychlá Jana , Vydra Jan , Lesný Petr , Otáhal Pavel
Published: August 2024

Background

The non-viral production of CAR-T cells through electroporation of transposon DNA plasmids is an alternative approach to lentiviral/retroviral methods. This method is particularly suitable for early-phase clinical trials involving novel types of CAR-T cells. The primary disadvantage of non-viral methods is the lower production efficiency compared to viral-based methods, which becomes a limiting factor for CAR-T production, especially in chemotherapy-pretreated lymphopenic patients.

Methods

We describe a good manufacturing practice (GMP)-compliant protocol for producing CD19 and CD123-specific CAR-T cells based on the electroporation of transposon vectors. The lymphocytes were purified from the blood of patients undergoing chemotherapy for B-NHL or AML and were electroporated with piggyBac transposon encoding CAR19 or CAR123, respectively. Electroporated cells were then polyclonally activated by anti-CD3/CD28 antibodies and a combination of cytokines (IL-4, IL-7, IL-21). The expansion was carried out in the presence of irradiated allogeneic blood-derived mononuclear cells (i.e., the feeder) for up to 21 days.

Results

Expansion in the presence of the feeder enhanced CAR-T production yield (4.5-fold in CAR19 and 9.3-fold in CAR123). Detailed flow-cytometric analysis revealed the persistence of early-memory CAR-T cells and a low vector-copy number after production in the presence of the feeder, with no negative impact on the cytotoxicity of feeder-produced CAR19 and CAR123 T cells. Furthermore, large-scale manufacturing of CAR19 carried out under GMP conditions using PBMCs obtained from B-NHL patients (starting number=200x10e6 cells) enabled the production of >50x10e6 CAR19 in 7 out of 8 cases in the presence of the feeder while only in 2 out of 8 cases without the feeder.

Conclusions

The described approach enables GMP-compatible production of sufficient numbers of CAR19 and CAR123 T cells for clinical application and provides the basis for non-viral manufacturing of novel experimental CAR-T cells that can be tested in early-phase clinical trials. This manufacturing approach can complement and advance novel experimental immunotherapeutic strategies against human hematologic malignancies.
Excess generation and activation of naturally arising memory-phenotype CD4+ T lymphocytes are inhibited by regulatory T cells in steady state
Authors: Li Jing , Yang Ziying , Kawajiri Akihisa , Sato Kosuke , Tayama Shunichi , Ishii Naoto , Zhu Jinfang , Kawabe Takeshi
Published: August 2024

Conventional CD4+ T lymphocytes consist of naïve, foreign antigen-specific memory, and self-antigen-driven memory-phenotype (MP) cell compartments at homeostasis. We recently showed that MP cells tonically proliferate in response to self-antigens and differentiate into the T-bet+ subset in steady state. How excess proliferation and differentiation of MP cells are inhibited remains unclear. Given immunosuppressive function of regulatory T cells (Tregs), it is possible that they are also involved in inhibition of spontaneous MP cell activation. Here we show using Foxp3-diphtheria toxin receptor-transgenic mice that both MP and naïve CD4+ T cells spontaneously proliferate and differentiate into Th1 cells upon acute Treg depletion. At an early time point post Treg depletion, MP as compared to naïve CD4+ T cells are preferentially activated while at a later stage, the response is dominated by activated cells originated from the naïve pool. Moreover, we argue that MP cell proliferation is driven by TCR and CD28 signaling whereas Th1 differentiation mediated by IL-2. Furthermore, our data indicate that such activation of MP and naïve CD4+ T lymphocytes contribute to development of multi-organ inflammation at early and later time points, respectively, after Treg ablation. Together our findings reveal that Tregs tonically inhibit early, spontaneous proliferation and Th1 differentiation of MP CD4+ T lymphocytes as well as late activation of naïve cells, thereby contributing to maintenance of T cell homeostasis.
Advanced vaccinomic, immunoinformatic, and molecular modeling strategies for designing Multi- epitope vaccines against the Enterobacter cloacae complex
Authors: Alhassan Hassan H.
Published: August 2024

The increasing and ongoing issue of antibiotic resistance in bacteria is of huge concern globally, mainly to healthcare facilities. It is now crucial to develop a vaccine for therapeutic and preventive purposes against the bacterial species causing hospital-based infections. Among the many antibiotic- resistant bacterial pathogens, the Enterobacter cloacae complex (ECC) including six species, E. Colcae, E. absuriae, E. kobie, E. hormaechei, E. ludwigii, and E. nimipressuralis, are dangerous to public health and may worsen the situation. Vaccination plays a vital role in the prevention of infections and infectious diseases. This research highlighted the construction and design of a multi-epitope vaccine for the E. cloacae complex by retrieving their complete sequenced proteome. The retrieved proteome was assessed to opt for potential vaccine candidates using immunoinformatic tools. Both B and T-cell epitopes were predicted in order to create both humoral and cellular immunity and further scrutinized for antigenicity, allergenicity, water solubility, and toxicity analysis. The final potential epitopes were subjected to population coverage analysis. Major histocompatibility complex (MHC) class combined, and MHC Class I and II world population coverage was obtained as 99.74%, and 98.55% respectively while a combined 81.81% was covered. A multi-epitope peptide-based vaccine construct consisting of the adjuvant, epitopes, and linkers was subjected to the ProtParam tool to calculate its physiochemical properties. The total amino acids were 236, the molecular weight was 27.64kd, and the vaccine construct was stable with an instability index of 27.01. The Grand Average of Hydropathy (GRAVY) (hydrophilicity) value obtained was -0.659, being more negative and depicting the hydrophilic character. It was non-allergen antigenic with an antigenicity of 0.8913. The vaccine construct was further validated for binding efficacy with immune cell receptors MHC-I, MHC-II, and Toll-like receptor (TLR)-4. The molecular docking results depict that the designed vaccine has good binding potency with immune receptors crucial for antigen presentation and processing. Among the Vaccine-MHC-I, Vaccine-MHC-II, and Vaccine-TLR-4 complexes, the best-docked poses were identified based on their lowest binding energy scores of -886.8, -995.6, and -883.6, respectively. Overall, we observed that the designed vaccine construct can evoke a proper immune response and the construct could help experimental researchers in the formulation of a vaccine against the targeted pathogens.
Design of adaptive cruise control strategy for EREV considering driving behavior
Authors: Zhang Jianwei , Wang Tao
Published: August 2024

Introduction

Traditional adaptive cruise control systems ignore the impact of the driver’s intentions and driving behavior on system performance.

Methods

In response to this issue, this study designs a new adaptive cruise control system by combining personalized driving style recognition, dynamic distance control, prospective energy management, and a model predictive control framework that integrates long short-term memory neural networks and ensemble learning.

Results

It was verified that the accuracy of the algorithm was 96.2%. In addition, experts had average ratings of 95, 96, and 98 for the economy, safety, and comfort of the system, respectively.

Discussion

This model is expected to achieve comprehensive performance optimization and improvement of EREV in complex driving environments, injecting new vitality and power into the intelligent development of electric vehicles.
Nasal turbinate lymphatic obstruction: a proposed new paradigm in the etiology of essential hypertension
Authors: Phillips William Thomas , Schwartz Joyce Gensberg
Published: August 2024

Hypertension affects an estimated 1.3 billion people worldwide and is considered the number one contributor to mortality via stroke, heart failure, renal failure, and dementia. Although the physiologic mechanisms leading to the development of essential hypertension are poorly understood, the regulation of cerebral perfusion has been proposed as a primary cause. This article proposes a novel etiology for essential hypertension. Our hypothesis developed from a review of nuclear medicine scans, where the authors observed a significantly abnormal increase in nasal turbinate vasodilation in hypertensive patients using quantitative region of interest analysis. The authors propose that nasal turbinate vasodilation and resultant blood pooling obstruct the flow of cerebrospinal fluid passing through nasal turbinate lymphatics, thereby increasing intracranial pressure. The authors discuss the glymphatic/lymphatic clearance system which is impaired with age, and at which time hypertension also develops. The increased intracranial pressure leads to compensatory hypertension via Cushing’s mechanism, i.e., the selfish brain hypothesis. The nasal turbinate vasodilation, due to increased parasympathetic activity, occurs simultaneously along with the well-established increased sympathetic activity of the cardiovascular system. The increased parasympathetic activity is likely due to an autonomic imbalance secondary to the increase in worldwide consumption of processed food. This hypothesis explains the rapid worldwide rise in essential hypertension in the last 50 years and offers a novel mechanism and a new paradigm for the etiology of essential hypertension. This new paradigm offers compelling evidence for the modulation of parasympathetic nervous system activity as a novel treatment strategy, specifically targeting nasal turbinate regulation, to treat diseases such as hypertension, idiopathic intracranial hypertension, and degenerative brain diseases. The proposed mechanism of essential hypertension presented in this paper is a working hypothesis and confirmatory studies will be needed.
Influence of a simple cyst on kidney function
Authors: Malkhasyan Vigen , Makhmudov Tukhtasin , Gilfanov Yunus , Semenyakin Igor , Sukhikh Sergey , Grigoryan Bagrat , Pushkar Dmitry
Published: August 2024

Introduction

The aim of the study was to estimate the influence of a simple kidney cyst on kidney function and to determine indications for surgical treatment.

Materials and methods

In this prospective cohort study, we analyze data on 109 patients who sought counseling with a simple kidney cyst. Patients with solitary cyst of the right or left kidney, grade I-IIF according to the Bosniak classification, were included. Split glomerular filtration rate (sGFR) was calculated. The maximum size of the cyst, single kidney volumes (SKV) and the volume of the lost (atrophied) parenchyma were estimated with computed tomography (CT) scan of the urinary tract with contrast.

Results

The average difference between the sGFR of a healthy and affected kidney cyst was 11 [8.70; 13.44] ml/min, which is a statistically significant value (p = 0.001). Correlation analysis revealed a statistically significant relationship between the proportion of lost parenchyma and the maximum cyst size: p = 0.37 with 95% CI [0.20; 0.52] (p = 0). A multivariate logistic regression model showed that a statistically significant factor influencing the likelihood of a significant decrease in sGFR is the percentage of lost kidney parenchyma (OR = 1.13; p = 0).

Conclusion

The growth of kidney cyst causes atrophy of the renal parenchyma and a decrease in the sGFR of the affected kidney. An increase in the volume of the atrophied parenchyma leads to a decrease in the sGFR of the affected kidney.
Development and applications of graduate outcome-based curriculum for basic medical education
Authors: Chen Guang , Wang Hongmei , Zhou Lingling , Yang Jingjin , Xu Linglong , Liang Yong
Published: August 2024

Introduction

Outcome-based education (OBE) leads to revolutionary change in medical education, but each medical school is acknowledged to develop suited framework based on specific positioning, educational philosophy and expected outcomes.

Methods

Based on the graduate outcomes of basic medical education in China released by Working Committee for the Accreditation of Medical Education (WCAME) which officially recognized by World Federation for Medical Education (WFME), Taizhou University re-documented the overall organization of the curriculum and classified the courses as “Crucial, Supporting and Associated (CSA)” categories to connect the graduate outcomes and course objectives.

Results

We redefined the standard for graduates in Taizhou University Medical School including 34 items in four domains and redesigned the curriculum with 76 courses classified as CSA. Empirical data reveals a substantial improvement in students’ performance on Standardized Competence Test for Clinical Medicine Undergraduates in China (SCTCMU) by implementing the CSA system between 2022 and 2023. Notably, in 2023, Taizhou University’s students achieved pass rates more than 20 percentage points higher than the national average, demonstrating a profound and unprecedented impact.

Conclusion

The CSA classification system provides a notably clear and structured framework for categorizing courses based on their direct or indirect relevance to educational objectives, which provides clarity to educators and empowers students with a more purposeful approach to their studies.
Disability 4.0: bioethical considerations on the use of embodied artificial intelligence
Authors: De Micco Francesco , Tambone Vittoradolfo , Frati Paola , Cingolani Mariano , Scendoni Roberto
Published: August 2024

Robotics and artificial intelligence have marked the beginning of a new era in the care and integration of people with disabilities, helping to promote their independence, autonomy and social participation. In this area, bioethical reflection assumes a key role at anthropological, ethical, legal and socio-political levels. However, there is currently a substantial diversity of opinions and ethical arguments, as well as a lack of consensus on the use of assistive robots, while the focus remains predominantly on the usability of products. The article presents a bioethical analysis that highlights the risk arising from using embodied artificial intelligence according to a functionalist model. Failure to recognize disability as the result of a complex interplay between health, personal and situational factors could result in potential damage to the intrinsic dignity of the person and human relations with healthcare workers. Furthermore, the danger of discrimination in accessing these new technologies is highlighted, emphasizing the need for an ethical approach that considers the social and moral implications of implementing embodied AI in the field of rehabilitation.
The impact of salinization on soil bacterial diversity, yield and quality of Glycyrrhiza uralensis Fisch.
Authors: Bao Yangmei , Ma Bin , McLaughlin Neil B. , Niu Ying , Wang Dongqing , Liu Hua , Li Ming , Sun Zhirong
Published: August 2024

Soil salinization seriously affects soil microbial diversity, and crop yield and quality worldwide. Microorganisms play a vital role in the process of crop yield and quality. Traditional Chinese medicine Glycyrrhiza uralensis Fisch. (licorice) can grow tenaciously in the heavily salinized land. However, the relationship between licorice plants and soil microorganisms is not clear. A field experiment was carried out to explore the effects of three different degrees of salinized soils on (i) licorice crop performance indicators, (ii) soil physical and chemical properties, and (iii) the changes in soil bacterial community structure and functional diversity in a semi-arid area of northwest China. The results showed that with the aggravation of soil salinization, the licorice yield, soil nutrients, and the bacterial abundance of Gemmatimonadetes and Myxococcota showed a downward trend, while the concentration of glycyrrhizic acid and liquiritin, and the bacterial abundance of Actinobacteria and Firmicutes showed an upward trend. The change of licorice yield mainly depended on the soil physical and chemical properties (e.g., EC and alkaline hydrolysable nitrogen). The change of licorice quality was more closely related to the change of bacterial diversity. The effect of bacterial diversity on liquiritin was greater than that on glycyrrhizic acid. Among them, Gemmatimonadetes were significantly negatively correlated with liquiritin and glycyrrhizic acid. These findings suggest that the increased soil Actinobacteria and Firmicutes or reduced Gemmatimonadetes and Myxococcota may provide a healthy and suitable living condition for the sustainable development of medicinal plant crops in a salinized soil ecosystem.
Metabolomics combined with intestinal microbiota reveals the mechanism of compound Qilian tablets against diabetic retinopathy
Authors: Jia Jiangwei , Liu Bo , Wang Xin , Ji Fenglan , Wen Fuchun , Xu Huibo , Ding Tao
Published: August 2024

Background

Diabetic retinopathy (DR) is one of the common chronic complications of diabetes mellitus, which has developed into the leading cause of irreversible visual impairment in adults worldwide. Compound Qilian tablets (CQLT) is a traditional Chinese medicine (TCM) developed for treating DR, but its mechanism is still unclear. This study explored the mechanism of action of CQLT in treating DR through metabolomics and intestinal microbiota.

Methods

Histopathologic examination of the pancreas and retina of Zucker diabetic fatty (ZDF) rats and immunohistochemistry were used to determine the expression levels of retinal nerve damage indicators ionized calcium binding adaptor molecule-1 (Iba-1) and glial fibrillary acidic protein (GFAP). Rat fecal samples were tested by LC-MS metabolomics to search for potential biomarkers and metabolic pathways for CQLT treatment of DR. Characteristic nucleic acid sequences of rat intestinal microbiota from each group were revealed using 16S rDNA technology to explore key microbes and related pathways for CQLT treatment of DR. At the same time, we investigated the effect of CQLT on the gluconeogenic pathway.

Results

After CQLT intervention, islet cell status was improved, Iba-1 and GFAP expression were significantly decreased, and abnormal retinal microvascular proliferation and exudation were ameliorated. Metabolomics results showed that CQLT reversed 20 differential metabolites that were abnormally altered in DR rats. Intestinal microbiota analysis showed that treatment with CQLT improved the abundance and diversity of intestinal flora. Functional annotation of metabolites and intestinal flora revealed that glycolysis/gluconeogenesis, alanine, aspartate and glutamate metabolism, starch and sucrose metabolism were the main pathways for CQLT in treating DR. According to the results of correlation analysis, there were significant correlations between Iba-1, GFAP, and intestinal microbiota and metabolites affected by CQLT. In addition, we found that CQLT effectively inhibited the gluconeogenesis process in diabetic mice.

Conclusion

In conclusion, CQLT could potentially reshape intestinal microbiota composition and regulate metabolite profiles to protect retinal morphology and function, thereby ameliorating the progression of DR.
Feature Interaction Dual Self-attention network for sequential recommendation
Authors: Zhu Yunfeng , Yao Shuchun , Sun Xun
Published: August 2024

Combining item feature information helps extract comprehensive sequential patterns, thereby improving the accuracy of sequential recommendations. However, existing methods usually combine features of each item using a vanilla attention mechanism. We argue that such a combination ignores the interactions between features and does not model integrated feature representations. In this study, we propose a novel Feature Interaction Dual Self-attention network (FIDS) model for sequential recommendation, which utilizes dual self-attention to capture both feature interactions and sequential transition patterns. Specifically, we first model the feature interactions for each item to form meaningful higher-order feature representations using a multi-head attention mechanism. Then, we adopt two independent self-attention networks to capture the transition patterns in both the item sequence and the integrated feature sequence, respectively. Moreover, we stack multiple self-attention blocks and add residual connections at each block for all self-attention networks. Finally, we combine the feature-wise and item-wise sequential patterns into a fully connected layer for the next item recommendation. We conduct experiments on two real-world datasets, and our experimental results show that the proposed FIDS method outperforms state-of-the-art recommendation models.
New evidence supports RYR3 as a candidate gene for developmental and epileptic encephalopathy
Authors: Li Jieling , Ou Yuexu , Duan Yuanhui , Gan Xiaoming , Liu Hu , Cao Jie
Published: August 2024

Background

The ryanodine receptor 3 (RYR3) is involved in skeletal muscle contraction by releasing calcium from the sarcoplasmic reticulum and subsequent T-tubule depolarization. It is also expressed in the brain, and variants in the RYR3 gene can lead to congenital myopathy type 20 (MIM: #620310).

Methods

We retrospectively analyzed the clinical characteristics and prognosis of a case of West syndrome, developmental and epileptic encephalopathy (DEE) caused by a missense variant in the RYR3 gene. We also reviewed and summarized the literature on epilepsy cases caused by RYR3 gene variants.

Results

A 10-month-old female child with delayed psychomotor development and recurrent spasm-like seizures was diagnosed with infantile spasm syndrome and DEE. Treatment with various antiepileptic drugs resulted in initial improvement but ultimately failed to control the seizures. Whole-exome sequencing revealed a novel heterozygous variant c.10943C > T/p.T3648M in the RYR3 gene, and genome-wide sequencing ruled out other potentially pathogenic variants. Three previous reports have described RYR3 variants causing DEE, two of which were attributed to de novo heterozygous variants, and one was a compound heterozygote.

Conclusion

The present case of DEE caused by a RYR3 heterozygous variant is consistent with previous rare cases of epilepsy caused by RYR3 gene variants in terms of pathogenesis and clinical features, but significantly different from congenital myopathy type 20. Our findings provide important evidence for the diagnosis of RYR3-related DEE, and we hypothesize that RYR3 gain-of-function variants resulting in “leaky” Ca2+ release channels may be a molecular genetic feature leading to DEE rather than myopathy.
Identification and Mendelian randomization validation of pathogenic gene biomarkers in obstructive sleep apnea
Authors: Gong Nianjin , Tuo Yu , Liu Peijun
Published: August 2024

Background

By 2020, obstructive sleep apnea (OSA), a prevalent respiratory disorder, had affected 26.6–43.2% of males and 8.7–27.8% of females worldwide. OSA is associated with conditions such as hypertension, diabetes, and tumor progression; however, the precise underlying pathways remain elusive. This study aims to identify genetic markers and molecular mechanisms of OSA to improve understanding and treatment strategies.

Methods

The GSE135917 dataset related to OSA was obtained from the GEO database. Differentially expressed genes (DEGs) were subsequently identified. Weighted gene co-expression network analysis (WGCNA) was conducted to pinpoint disease-associated genes. The intersection of these data enabled the identification of potential diagnostic DEGs. Further analyses included Gene Ontology and Kyoto Encyclopedia of Genes and Genomes enrichment studies, exploration of protein–protein interactions based on these genes, and an examination of immune infiltration. Mendelian randomization was employed to validate core genes against the Genome-Wide Association Study database.

Results

A total of 194 DEGs were identified in this study. WGCNA network analysis highlighted 2,502 DEGs associated with OSA. By intersecting these datasets, 53 diagnostic DEGs primarily involved in metabolic pathways were identified. Significant alterations were observed in immune cell populations, including memory B cells, plasma cells, naive CD4 T cells, M0 macrophages, and activated dendritic cells. CETN3, EEF1E1, PMM2, GTF2A2, and RRM2 emerged as hub genes implicated in the pathogenesis. A line graph model provides diagnostic insights. Mendelian randomization analysis confirmed a causal link between CETN3 and GTF2A2 with OSA.

Conclusion

Through WGCNA, this analysis uncovered significant genetic foundations of OSA, identifying 2,502 DEGs and 194 genes associated with the disorder. Among these, CETN3 and GTF2A2 were found to have causal relationships with OSA.