bluuebunny/crossref_metadata_2025 huggingface dataset:
Performance of methods for estimating size - transition matrices using tag - recapture data
Authors: Punt André E. , Buckworth Rik C. , Dichmont Catherine M. , Ye Yimin
Published: February 2009

Management advice for hard-to-age species such as prawns, crabs and rock lobsters are usually based on size-structured population dynamics models. These models require a size–transition matrix that specifies the probabilities of growing from one size-class to the others. Many methods exist to estimate size–transition matrices using tag–recapture data. However, they have not been compared in a systematic way. Eight of these methods are compared using Monte Carlo simulations parameterised using the data for the tiger prawn (Penaeus semisulcatus). Four of the methods are then applied to tag–recapture data for three prawn species in Australia’s Northern Prawn Fishery to highlight the considerable sensitivity of model outputs to the method for estimating the size–transition matrix. The simulations show that not all methods perform equally well and that some methods are extremely poor. The ‘best’ methods, as identified in the simulations, are those that allow for individual variability in the parameters of the growth curve as well as the age-at-release. A method that assumes that l∞ rather than k varies among individuals tends to be more robust to violations of model assumptions.
Migration of feral pigs (Sus scrofa) in rainforests of north Queensland: fact or fiction?
Authors: Mitchell J. , Dorney W. , Mayer R. , McIlroy J.
Published: February 2009

The Wet Tropics bioregion of north Queensland has been identified as an area of global significance. The world-heritage-listed rainforests have been invaded by feral pigs (Sus scrofa) that are perceived to cause substantial environmental damage. A community perception exists of an annual altitudinal migration of the feral-pig population. The present study describes the movements of 29 feral pigs in relation to altitudinal migration (highland, transitional and lowland areas). Feral pigs were sedentary and stayed within their home range throughout a 4-year study period. No altitudinal migration was detected; pigs moved no more than a mean distance of 1.0 km from the centre of their calculated home ranges. There was no significant difference between the mean (±95% confidence interval) aggregate home ranges for males (8.7 ± 4.3 km2, n = 15) and females (7.2 ± 1.8 km2, n = 14). No difference in home range was detected among the three altitudinal areas: 7.2 ± 2.4 km2 for highland, 6.2 ± 3.9 km2 for transitional and 9.9 ± 5.3 km2 for lowland areas. The aggregate mean home range for all pigs in the present study was 8.0 ± 2.4 km2. The study also assessed the influence seasons had on the home range of eight feral pigs on the rainforest boundary; home ranges did not significantly vary in size between the tropical wet and dry seasons, although the mean home range in the dry season (7.7 ± 6.9 km2) was more than twice the home range in the wet season (2.9 ± 0.8 km2). Heavier pigs tended to have larger home ranges. The results of the present study suggest that feral pigs are sedentary throughout the year so broad-scale control techniques need to be applied over sufficient areas to encompass individual home ranges. Control strategies need a coordinated approach if a long-term reduction in the pig population is to be achieved.
Estimates of productivity and detection probabilities of breeding attempts in the sooty shearwater (Puffinus griseus), a burrow-nesting petrel
Authors: Newman Jamie , Fletcher David , Moller Henrik , Bragg Corey , Scott Darren , McKechnie Sam
Published: February 2009

Monitoring of breeding success in burrow-nesting seabirds is problematic, owing to the difficulties of detecting occupants in complex burrow systems. We summarise 6 years of monitoring the breeding success of sooty shearwater (tītī, muttonbird, Puffinus griseus) on two southern New Zealand islands, The Snares and Whenua Hou, with a portable infrared camera system. Breeding attempts were monitored three times during the breeding season, i.e. egg laying, hatching and fledging. Overall breeding success was calculated in two stages. First, we estimated breeding success for each island–site–year combination with a model that allowed for imperfect detection of an egg or chick and accounted for the proportion of the breeding season that was covered by monitoring. The resulting estimates for each island were then analysed with a linear model, to provide a single estimate for that island. Breeding success was found to be highly variable and non-synchronous between islands, with the average proportion of eggs successfully fledging on The Snares (0.35, 0.20–0.52; mean and 95% creditable interval) being considerably lower and more variable than that on Whenua Hou (0.76, 0.70–0.82). Probability of detecting a breeding attempt was higher on The Snares whereas correcting for the proportion of the season monitored had a variable effect, reducing The Snares and Whenua Hou estimates by 27% and 7% respectively. The implications of these findings with respect to the demographic modelling of burrow-nesting species are discussed.
Evaluation of euthanasia and trap - neuter - return (TNR) programs in managing free-roaming cat populations
Authors: Schmidt Paige M. , Swannack Todd M. , Lopez Roel R. , Slater Margaret R.
Published: February 2009

Global estimates of the number of domestic cats (Felis catus) are >400 million. Issues associated with free-roaming cats are of global importance because of animal-welfare and public-health concerns and impacts on native wildlife through predation, competition and disease transmission. In the United States, proposed control solutions for managing urban free-roaming cat populations include euthanasia and trap–neuter–return (TNR) programs. We evaluated control methods using a demographic population model for a 25-year period, with parameters estimated from an unmanaged, free-roaming cat population in Texas. We modelled euthanasia and TNR at 25%, 50% and 75% implementation rates and a 50 : 50 combination of euthanasia and TNR at 25%, 50%, 75% and 100% implementation rates for 0%, 25% and 50% maximum immigration rates. We compared final population size, total number of cats treated and treatment effort relative to population reduction. Population decreases were comparable among euthanasia, TNR and a 50 : 50 combination for all treatment rates when the immigration rate was 0%; however, they were higher for euthanasia at 25% and 50% maximum immigration rates. Euthanasia required higher treatment effort than TNR. Our results indicate that immigration must be prevented and high (>50%) treatment rates implemented to reduce free-roaming cat populations.
Small mammal populations in a eucalypt forest affected by fire and drought. I. Long-term patterns in an era of climate change
Authors: Recher Harry F. , Lunney Daniel , Matthews Alison
Published: February 2009

This paper reports a study of ground-dwelling, small mammals in coastal eucalypt forest in south-eastern Australia from 1970 through 2005. During this time, the study area burnt in an intense fire in December 1972 and was partially burnt in November 1980. Both fires were associated with prolonged drought. The mammals studied comprised two dasyurid marsupials, Antechinus agilis and A. swainsonii, two native murid rodents, Rattus fuscipes and R. lutreolus, and the introduced house mouse Mus musculus. After intensive sampling throughout the year from 1970 through 1972 to establish basic ecological and population parameters of the small mammal community, populations were sampled annually during late autumn and early winter before the onset of breeding. There were marked differences in the annual (autumn/winter) abundances of all species; numbers of A. agilis ranged from 4 to 142 individuals; A. swainsonii 0 to 43; R. fuscipes 4 to 54; R. lutreolus 0 to 11; M. musculus 0 to 23. Following the 1972 fire, numbers fell to the lowest level recorded during the study and each population subsequently disappeared from the plot between the 1973 and 1974 winter censuses. The less intense 1980 fire did not lead to extirpation, but numbers of A. agilis, A. swainsonii and R. fuscipes declined as drought conditions persisted through 1983. R. lutreolus occurred consistently only following the fires, when a grassy ground vegetation favoured by this species developed. Similarly, M. musculus colonised within two years of the fires and persisted on the plot for 3–4 years before disappearing. Following the fires, populations of the omnivorous R. fuscipes recovered first followed by the scansorial, insectivorous A. agilis and last by the fossorial, insectivorous A. swainsonii. Two primary conclusions emerged from this study. First, the intense fire of 1972 did not kill all the animals immediately, but led to the disappearance of each species from the plot over 18 months. Thus, intense fire had a delayed but catastrophic impact on small ground-dwelling mammals. The fluctuations in population levels, covering more than an order of magnitude, demonstrate that factors other than fire, such as rainfall and drought, drive the population dynamics of these small mammals. As stability and recovery are not features of local populations, long-term studies of benchmark populations are necessary to manage forest biodiversity.
Assessing microhabitat use by roe deer and moose in China
Authors: Jiang Guangshun , Ma Jianzhang , Zhang Minghai , Stott Philip
Published: February 2009

Potential conflicts between forestry production practices and wildlife habitat requirements are increasing globally with rapid socioeconomic development. Moose (Alces alces cameloides) and roe deer (Capreolus pygargus bedfordi) populations are in decline in north-eastern China, an area managed for forestry production. We obtained detailed information about these species’ use of habitat by following their movement paths in snow and recording behaviours exhibited along their paths. We used fractal analysis, Mann–Whitney U-tests and linear mixed models to analyse the paths and the relationships between tortuousity, habitat, and the expressed behaviours at different spatial scales. This analysis showed a natural break in the fractal dimension of moose movement paths at a scale of ~10 m, suggesting that moose exhibited different responses to their microhabitat and behavioural requirements at scales above and below this threshold. However, we detected no differences in the responses of roe deer over a scale range of 3–20 m. Moose paths tended to pass through areas with higher basal areas of tree stems and those with deeper snow. Roe deer showed positive associations between tortuousity and the number of bedding sites and feeding sites, and a negative association between tortuousity and the total basal area of tree stems. There was a positive relationship between the numbers of bedding and defaecating sites, and a negative association between the number of bedding sites and snow depth. For moose, we found positive associations between tortuousity and the number of defaecating sites, the basal areas of both broadleaf stands and mixed conifer and broadleaf stands, and a negative association between tortuousity and the number of feeding sites. We concluded that roe deer foraged in accordance with patch-use theory, whereas moose foraged in accordance with diet-selection theory. We concluded that modifications to forestry practices to foster the populations of both species of deer will require forestry operations to be conducted on a much finer scale, and that one species can be promoted over the other by selective fine-scale habitat management.
Recent speciation associated with the evolution of selfing inCapsella
Authors: Foxe John Paul , Slotte Tanja , Stahl Eli A. , Neuffer Barbara , Hurka Herbert , Wright Stephen I.
Published: February 2009

The evolution from outcrossing to predominant self-fertilization represents one of the most common transitions in flowering plant evolution. This shift in mating system is almost universally associated with the “selfing syndrome,” characterized by marked reduction in flower size and a breakdown of the morphological and genetic mechanisms that prevent self-fertilization. In general, the timescale in which these transitions occur, and the evolutionary dynamics associated with the evolution of the selfing syndrome are poorly known. We investigated the origin and evolution of selfing in the annual plantCapsella rubellafrom its self-incompatible, outcrossing progenitorCapsella grandifloraby characterizing multilocus patterns of DNA sequence variation at nuclear genes. We estimate that the transition to selfing and subsequent geographic expansion have taken place during the past 20,000 years. This transition was probably associated with a shift from stable equilibrium toward a near-complete population bottleneck causing a major reduction in effective population size. The timing and severe founder event support the hypothesis that selfing was favored during colonization as new habitats emerged after the last glaciation and the expansion of agriculture. These results suggest that natural selection for reproductive assurance can lead to major morphological evolution and speciation on relatively short evolutionary timescales.
CD93 is required for maintenance of antibody secretion and persistence of plasma cells in the bone marrow niche
Authors: Chevrier Stéphane , Genton Céline , Kallies Axel , Karnowski Alexander , Otten Luc A. , Malissen Bernard , Malissen Marie , Botto Marina , Corcoran Lynn M. , Nutt Stephen L. , Acha-Orbea Hans
Published: February 2009

Plasma cells represent the end stage of B-cell development and play a key role in providing an efficient antibody response, but they are also involved in numerous pathologies. Here we show that CD93, a receptor expressed during early B-cell development, is reinduced during plasma-cell differentiation. High CD93/CD138 expression was restricted to antibody-secreting cells both in T-dependent and T-independent responses as naive, memory, and germinal-center B cells remained CD93-negative. CD93 was expressed on (pre)plasmablasts/plasma cells, including long-lived plasma cells that showed decreased cell cycle activity, high levels of isotype-switched Ig secretion, and modification of the transcriptional network. T-independent and T-dependent stimuli led to re-expression of CD93 via 2 pathways, either before or after CD138 or Blimp-1 expression. Strikingly, while humoral immune responses initially proceeded normally, CD93-deficient mice were unable to maintain antibody secretion and bone-marrow plasma-cell numbers, demonstrating that CD93 is important for the maintenance of plasma cells in bone marrow niches.
Oligomeric amyloid β associates with postsynaptic densities and correlates with excitatory synapse loss near senile plaques
Authors: Koffie Robert M. , Meyer-Luehmann Melanie , Hashimoto Tadafumi , Adams Kenneth W. , Mielke Matthew L. , Garcia-Alloza Monica , Micheva Kristina D. , Smith Stephen J. , Kim M. Leo , Lee Virginia M. , Hyman Bradley T. , Spires-Jones Tara L.
Published: February 2009

Synapse loss correlates with a cognitive decline in Alzheimer's disease (AD), but whether this is caused by fibrillar deposits known as senile plaques or soluble oligomeric forms of amyloid β (Aβ) is controversial. By using array tomography, a technique that combines ultrathin sectioning of tissue with immunofluorescence, allowing precise quantification of small structures, such as synapses, we have tested the hypothesis that oligomeric Aβ surrounding plaques contributes to synapse loss in a mouse model of AD. We find that senile plaques are surrounded by a halo of oligomeric Aβ. Analysis of >14,000 synapses (represented by PSD95-stained excitatory synapses) shows that there is a 60% loss of excitatory synapses in the halo of oligomeric Aβ surrounding plaques and that the density increases to reach almost control levels in volumes further than 50 μm from a plaque in an approximately linear fashion (linear regression,
r
2
= 0.9;
P
< 0.0001). Further, in transgenic cortex, microdeposits of oligomeric Aβ associate with a subset of excitatory synapses, which are significantly smaller than those not in contact with oligomeric Aβ. The proportion of excitatory synapses associated with Aβ correlates with decreasing density (correlation, −0.588;
P
< 0.0001). These data show that senile plaques are a potential reservoir of oligomeric Aβ, which colocalizes with the postsynaptic density and is associated with spine collapse, reconciling the apparently competing schools of thought of “plaque” vs. “oligomeric Aβ” as the synaptotoxic species in the brain of AD patients.
Discoveries of new mammal species and their implications for conservation and ecosystem services
Authors: Ceballos Gerardo , Ehrlich Paul R.
Published: February 2009

In light of recent discoveries of many new species of poorly-studied organisms, we examine the biodiversity of mammals, a well known “charismatic” group. Many assume that nearly all mammal species are known to scientists. We demonstrate that this assumption is incorrect. Since 1993, 408 new mammalian species have been described, ≈10% of the previously known fauna. Some 60% of these are “cryptic” species, but 40% are large and distinctive. A substantial number persist only in areas undergoing rapid habitat destruction. Our findings suggest global animal and plant species diversity is badly underestimated even in well studied taxa. This implies even greater threats to ecosystem services and human well-being than previously assumed, and an increased need to explore, understand, and conserve Earth's living resources.
IL-32–dependent effects of IL-1β on endothelial cell functions
Authors: Nold-Petry Claudia A. , Nold Marcel F. , Zepp Jarod A. , Kim Soo-Hyun , Voelkel Norbert F. , Dinarello Charles A.
Published: February 2009

Increasing evidence demonstrates that interleukin (IL)–32 is a pro-inflammatory cytokine, inducing IL-1α, IL-1β, IL-6, tumor necrosis factor (TNF)–α, and chemokines via nuclear factor (NF)–κB, p38 mitogen-activated protein kinase (MAPK), and activating protein (AP)-1 activation. Here we report that IL-32 is expressed and is also functional in human vascular endothelial cells (EC) of various origins. Compared with primary blood monocytes, high levels of IL-32 are constitutively produced in human umbilical vein EC (HUVEC), aortic macrovascular EC, and cardiac as well as pulmonary microvascular EC. At concentrations as low as 0.1 ng/ml, IL-1β stimulated IL-32 up to 15-fold over constitutive levels, whereas 10 ng/ml of TNFα or 100 ng/ml of lipopolysaccharide (LPS) were required to induce similar quantities of IL-32. IL-1β–induced IL-32 was reduced by inhibition of the IκB kinase-β/NF-κB and ERK pathways. In addition to IL-1β, pro-coagulant concentrations of thrombin or fresh platelets increased IL-32 protein up to 6-fold. IL-1β and thrombin induced an isoform-switch in steady-state mRNA levels from IL-32α/γ to β/ε. Adult EC responded in a similar fashion. To prove functionality, we silenced endogenous IL-32 with siRNA, decreasing intracellular IL-32 protein levels by 86%. The knockdown of IL-32 resulted in reduction of constitutive as well as IL-1β–induced intercellular adhesion molecule–1 (ICAM-1) (of 55% and 54%, respectively), IL-1α (of 62% and 43%), IL-6 (of 53% and 43%), and IL-8 (of 46% and 42%). In contrast, the anti-inflammatory/anti-coagulant CD141/thrombomodulin increased markedly when IL-32 was silenced. This study introduces IL-32 as a critical regulator of endothelial function, expanding the properties of this cytokine relevant to coagulation, endothelial inflammation, and atherosclerosis.
Normal forms for reduced stochastic climate models
Authors: Majda Andrew J. , Franzke Christian , Crommelin Daan
Published: February 2009

The systematic development of reduced low-dimensional stochastic climate models from observations or comprehensive high-dimensional climate models is an important topic for atmospheric low-frequency variability, climate sensitivity, and improved extended range forecasting. Here techniques from applied mathematics are utilized to systematically derive normal forms for reduced stochastic climate models for low-frequency variables. The use of a few Empirical Orthogonal Functions (EOFs) (also known as Principal Component Analysis, Karhunen–Loéve and Proper Orthogonal Decomposition) depending on observational data to span the low-frequency subspace requires the assessment of dyad interactions besides the more familiar triads in the interaction between the low- and high-frequency subspaces of the dynamics. It is shown below that the dyad and multiplicative triad interactions combine with the climatological linear operator interactions to simultaneously produce both strong nonlinear dissipation and Correlated Additive and Multiplicative (CAM) stochastic noise. For a single low-frequency variable the dyad interactions and climatological linear operator alone produce a normal form with CAM noise from advection of the large scales by the small scales and simultaneously strong cubic damping. These normal forms should prove useful for developing systematic strategies for the estimation of stochastic models from climate data. As an illustrative example the one-dimensional normal form is applied below to low-frequency patterns such as the North Atlantic Oscillation (NAO) in a climate model. The results here also illustrate the short comings of a recent linear scalar CAM noise model proposed elsewhere for low-frequency variability.
Computational structure-based redesign of enzyme activity
Authors: Chen Cheng-Yu , Georgiev Ivelin , Anderson Amy C. , Donald Bruce R.
Published: February 2009

We report a computational, structure-based redesign of the phenylalanine adenylation domain of the nonribosomal peptide synthetase enzyme gramicidin S synthetase A (GrsA-PheA) for a set of noncognate substrates for which the wild-type enzyme has little or virtually no specificity. Experimental validation of a set of top-ranked computationally predicted enzyme mutants shows significant improvement in the specificity for the target substrates. We further present enhancements to the methodology for computational enzyme redesign that are experimentally shown to result in significant additional improvements in the target substrate specificity. The mutant with the highest activity for a noncognate substrate exhibits 1/6 of the wild-type enzyme/wild-type substrate activity, further confirming the feasibility of our computational approach. Our results suggest that structure-based protein design can identify active mutants different from those selected by evolution.
Temporal cue–target overlap is not essential for backward inhibition in task switching
Authors: Grange James A. , Houghton George
Published: February 2009

Lag 2 repetition costs are a performance cost observed when participants return to a task after just one intervening trial of a different task, compared to returning after a longer interval (AB A vs. CB A sequences, where A, B, C are tasks). This effect is known as backward inhibition (BI) and is thought to reflect the need to overcome inhibition applied specifically to Task “A” during disengagement at trial n – 1. Druey and Hübner (2007) have suggested that employment of such a specific inhibitory mechanism relies upon the cue and the target of the task overlapping temporally. We provide evidence across three experiments (including a direct replication attempt) that this is not the case, and that the presence of task-specific BI relies to some extent on the need to translate the cue–target relationship into working memory. Additionally, we provide evidence that faster responses in no overlap conditions are driven by low-level perceptual differences between target displays across overlap conditions. We conclude that BI is an effective sequential control mechanism, employed equally in cases of temporally overlapping and temporally separated cues and targets.
Reduction of the turbulent blob transport in the scrape-off layer by a resonant magnetic perturbation in TEXTOR
Authors: Xu Y. , Weynants R.R. , Van Schoor M. , Vergote M. , Jachmich S. , Jakubowski M.W. , Mitri M. , Schmitz O. , Unterberg B. , Beyer P. , Reiser D. , Finken K.H. , Lehnen M.
Published: February 2009

During the static 6/2 Dynamic Ergodic Divertor experiments in TEXTOR, a significant influence of the edge resonant magnetic perturbation (RMP) on the turbulent blob transport in the scrape-off layer (SOL) has been observed. In ohmic discharges without the RMP, the blobs extend 4–5 cm deep into the SOL with a radially outward moving speed of about 1 km s−1 and hence constitute a strong outflow of mass. With the application of the RMP, the blob amplitudes and their radially moving velocity are both reduced, resulting in a significant reduction of the blob transport in the SOL. The reduction effect of the RMP on blobs is found to be robust to changes in the operational regime and to phasing variations of the RMP as well. The blob dynamics appears to be consistent with the paradigm of the radial motions of the blob structures driven by the interchange instability.
Ultrasome: efficient aberration caller for copy number studies of ultra-high resolution
Authors: Nilsson Björn , Johansson Mikael , Al-Shahrour Fatima , Carpenter Anne E. , Ebert Benjamin L.
Published: February 2009

Motivation: Multimillion-probe microarrays allow detection of gains and losses of chromosomal material at unprecedented resolution. However, the data generated by these arrays are several-fold larger than data from earlier platforms, creating a need for efficient analysis tools that scale robustly with data size.

Results: We developed a new aberration caller, Ultrasome, that delineates genomic changes-of-interest with dramatically improved efficiency. Ultrasome shows near-linear computational complexity and processes latest generation copy number arrays about 10 000 times faster than standard methods with preserved analytic accuracy.

Availability:  www.broad.mit.edu/ultrasome.

Contact:  bnilsson@broad.mit.edu

Supplementary information:  Supplementary data are available at Bioinformatics online.
Cystatin C and NT‐proBNP, a powerful combination of biomarkers for predicting cardiovascular mortality in elderly patients with heart failure: results from a 10‐year study in primary care
Authors: Alehagen Urban , Dahlström Ulf , Lindahl Tomas L.
Published: February 2009

Aims

Heart failure (HF) is common among the elderly patients. It is essential to identify those at high risk in order to optimize the use of resources. We aimed to evaluate whether a combination of two biomarkers might give better prognostic information about the risk of cardiovascular (CV) mortality in patients with symptoms associated with HF, compared with only one biomarker.

Methods and results

Four hundred and sixty‐four primary health‐care patients (mean age 73 years, range 65–87) with symptoms of HF were examined. All patients were evaluated using Doppler echocardiography and blood samples, including measurement of cystatin C and NT‐proBNP. The patients were followed over a 10‐year period. Patients with serum cystatin C levels within the highest quartile had almost three times the risk (HR: 2.92; 95% CI: 1.23–4.90) of CV mortality compared with those patients who had levels within the first, second, or third quartiles. If, at the same time, the patient had a plasma concentration of NT‐proBNP within the highest quartile, the risk increased to >13 times (HR: 13.61; 95% CI: 2.56–72.24) during 10 years of follow‐up or >17 times (HR: 17.04; 95% CI: 1.80–163.39) after 5 years of follow‐up.

Conclusion

Combined analysis of cystatin C and NT‐proBNP could provide important prognostic information among elderly patients in the community with symptoms of HF.
The effects of trawling on the physical condition of the Norway lobster Nephrops norvegicus in relation to seasonal cycles in the Clyde Sea area
Authors: Milligan R. J. , Albalat A. , Atkinson R. J. A. , Neil D. M.
Published: February 2009

Milligan, R. J., Albalat, A., Atkinson, R. J. A., and Neil, D. M. 2009. The effects of trawling on the physical condition of the Norway lobster Nephrops norvegicus in relation to seasonal cycles in the Clyde Sea area. – ICES Journal of Marine Science, 66: 488–494. The fishery for Norway lobster, Nephrops norvegicus, is the most valuable in Scotland, but few studies have examined the physical condition of the animals trawled. This study aimed to determine the extent of physical damage caused by trawling to Nephrops in the Clyde Sea area in relation to trawl duration, sex, size, and moult stage. Longer trawls (2.5–4 h) corresponded to increased damage in “hard” (intermoult) Nephrops compared with short (1 h) or very short (15 min) trawls, but there was no correlation in “soft” (late intermoult or recently moulted) or “jelly” (immediate post-moult) Nephrops. This effect appeared to be limited to Nephrops with a carapace length (CL) of 20.0–29.9 mm. Seasonal effects were also observed, with numbers of jelly Nephrops highest in May 2006, corresponding to a peak in female prevalence in the catches, an increase in the mean CL of females, and greater damage in females. The proportion of females was higher than males from May to September 2006, and it is suggested that this corresponds to female emergence patterns. As quality will be low, it may be pertinent to avoid fishing during the peak emergence period to maximize the quality and profitability of catches.
Assessment of Postischemic Neurogenesis in Rats with Cerebral Ischemia and Propofol Anesthesia
Authors: Lasarzik Irina , Winkelheide Uta , Stallmann Sonja , Orth Christian , Schneider Astrid , Tresch Achim , Werner Christian , Engelhard Kristin
Published: February 2009

Background

Postischemic endogenous neurogenesis can be dose-dependently modulated by volatile anesthetics. The intravenous anesthetic propofol is used during operations with a risk of cerebral ischemia, such as neurosurgery, cardiac surgery, and vascular surgery. The effects of propofol on neurogenesis are unknown and, therefore, the object of this study.

Methods

Eighty male Sprague-Dawley rats were randomly assigned to treatment groups with propofol administration for 3 h: 36 mg x kg(-1) x h(-1) propofol with or without cerebral ischemia and 72 mg x kg(-1) x h(-1) propofol with or without cerebral ischemia. In addition, 7 rats with propofol administration for 6 h and 14 treatment-naive rats were investigated. Forebrain ischemia was induced by bilateral carotid artery occlusion and hemorrhagic hypotension. Animals received 5-bromo-2-deoxyuridine for 7 days. 5-Bromo-2-deoxyuridine-positive neurons were counted in the dentate gyrus after 9 and 28 days. Spatial learning in the Barnes maze and histopathologic damage of the hippocampus were analyzed.

Results

Propofol revealed no impact on basal neurogenesis. Cerebral ischemia increased the amount of new neurons. After 28 days, neurogenesis significantly increased in animals with low-dose propofol administered during cerebral ischemia compared with naive animals, whereas no significant difference was observed in animals with high-dose propofol during ischemia. Neuronal damage in the CA3 region was increased at 28 days with high-dose propofol. Postischemic deficits in spatial learning were not affected by propofol.

Conclusions

Independent effects of propofol are difficult to ascertain. Peri-ischemic propofol administration may exert secondary effects on neurogenesis by modulating the severity of histopathologic injury and thereby regenerative capacity of the hippocampus.
Long-term Consequences of Postoperative Cognitive Dysfunction
Authors: Steinmetz Jacob , Christensen Karl Bang , Lund Thomas , Lohse Nicolai , Rasmussen Lars S.
Published: February 2009

Background

Postoperative cognitive dysfunction (POCD) is common in elderly patients after noncardiac surgery, but the consequences are unknown. The authors' aim was to determine the effects of POCD on long-term prognosis.

Methods

This was an observational study of Danish patients enrolled in two multicenter studies of POCD between November 1994 and October 2000. The cohort was followed up from the date of surgery until August 2007. Cognitive function was assessed by a neuropsychological test battery at three time points: before, at 1 week after, and at 3 months after noncardiac surgery. Data on survival, labor market attachment, and social transfer payments were obtained from administrative databases. The Cox proportional hazards regression model was used to compute relative risk estimates for mortality and disability, and the relative prevalence of time on social transfer payments was assessed by Poisson regression.

Results

A total of 701 patients were followed up for a median of 8.5 yr (interquartile range, 5.3-11.4 yr). POCD at 3 months, but not at 1 week, was associated with increased mortality (hazard ratio, 1.63 [95% confidence interval, 1.11-2.38]; P = 0.01, adjusted for sex, age, and cancer). The risk of leaving the labor market prematurely because of disability or voluntary early retirement was higher among patients with 1-week POCD (hazard ratio, 2.26 [1.24-4.12]; P = 0.01). Patients with POCD at 1 week received social transfer payments for a longer proportion of observation time (prevalence ratio, 1.45 [1.03-2.04]; P = 0.03).

Conclusions

Cognitive dysfunction after noncardiac surgery was associated with increased mortality, risk of leaving the labor market prematurely, and dependency on social transfer payments.
Role for Metallothioneins-I/II in Isoflurane Preconditioning of Primary Murine Neuronal Cultures
Authors: Edmands Scott D. , Hall Adam C.
Published: February 2009

Background

Pretreatment with inhaled anesthetics, including isoflurane, can induce long-lasting cellular protection against ischemia-derived toxicity in multiple tissues, including brain tissue. Metal-regulatory genes, metallothioneins-I/II (MT-I/II), have been shown to protect against oxidative damage in multiple tissues. Furthermore, MT have been found to be differentially regulated in response to isoflurane and ischemic preconditioning. In this study, we assess the role of MT-I/II in mediating isoflurane preconditioning in primary neuronal-glial cultures.

Methods

Primary mouse neuronal-glial cultures were preconditioned with isoflurane (3 h, 1.5%) 24-96 h before 3-h oxygen-glucose deprivation (OGD, ischemic model). After OGD, isoflurane protection and responsiveness of MT-I/II knockdown and knockout cultures to preconditioning were assessed by lactate dehydrogenase release. Immunoassays for microtubule associated protein 2 and glial fibrillary acidic protein determined neuronal-glial sensitivity to preconditioning. MT-I/II messenger RNA was assessed by quantitative reverse transcriptase-polymerase chain reaction. Cultures transfected with exogenous MT-I/II were analyzed for protection against OGD toxicity.

Results

Isoflurane preconditioning reduced OGD-mediated toxicity by 11.6 +/- 7.9% at 24 h, with protection increasing to 37.5 +/- 2.5% at 72 h after preconditioning. Immunolabeling showed that neurons were more sensitive to OGD and more responsive to isoflurane preconditioning compared to glia. Quantitative reverse transcriptase-polymerase chain reaction showed MT-I/II messenger RNA were upregulated (approximately 2.5-fold) by isoflurane treatments. Also MT-I/II protein transfection significantly decreased OGD-mediated toxicity. Finally, knockdown and knockout of MT-I/II diminished and abolished isoflurane-mediated protection, respectively.

Conclusions

MT-I/II play an important role in isoflurane-mediated delayed preconditioning against OGD toxicity of neuronal and glial cells in vitro.
Intraoperative Fraction of Inspired Oxygen Is a Modifiable Risk Factor for Surgical Site Infection after Spinal Surgery
Authors: Maragakis Lisa L. , Cosgrove Sara E. , Martinez Elizabeth A. , Tucker Margaret G. , Cohen David B. , Perl Trish M.
Published: February 2009

Background

Surgical site infections (SSI) after spinal surgery increase morbidity, mortality, length of hospital stay, and costs. Most previously identified risk factors for these infections, such as severity of illness and procedure duration, are not amenable to intervention. This study sought to identify modifiable risk factors associated with SSI after spinal surgery.

Methods

This is a case-control study including case identification and review of medical records. A total of 104 patients with SSI after spinal surgery were compared to 104 randomly selected control patients without SSI after spinal surgery in a 926-bed tertiary care hospital in Baltimore, Maryland, between April 1, 2001 and December 31, 2004.

Results

Multivariate analysis identified independent risk factors for SSI after spinal surgery including prolonged procedure duration (odds ratio [OR], 4.7; 95% confidence interval [95% CI], 1.6-14; P < 0.001), American Society of Anesthesiologists score of 3 or greater (OR, 9.7; 95% CI, 3.7-25; P < 0.001), lumbar-sacral operative level (OR, 2.9; 95% CI, 1.2-7.1; P = 0.02), posterior approach (OR, 3.5; 95% CI, 1.2-9.7; P = 0.02), instrumentation (OR, 2.5; 95% CI, 1.1-6.0; P = 0.03), obesity (OR, 4.0; 94% CI, 1.6-10; P < 0.01), razor shaving before surgery (OR, 3.6; 95% CI, 1.2-11; P = 0.02), and intraoperative administered fraction of inspired oxygen of less than 50% (OR, 12; 94% CI, 4.5-33; P < 0.001).

Conclusions

In addition to previously reported risk factors, this study identified intraoperative administered fraction of inspired oxygen of less than 50% as an independent, modifiable risk factor for SSI after spinal surgery. Intraoperative administration of at least 50% fraction of inspired oxygen should be tested prospectively as an intervention to prevent SSI after spinal surgery.
Further Proof that the Spinal Cord, and Not the Brain, Mediates the Immobility Produced by Inhaled Anesthetics
Authors: Yang Jing , Chai Yun-Fei , Gong Chun-Yu , Li Guo-hua , Luo Nan , Luo Nan-Fu , Liu Jin
Published: February 2009

Background

Previous investigations indicate that the spinal cord, perhaps with a minor cerebral contribution, mediates the capacity of inhaled anesthetics to produce immobility in the face of noxious stimulation. The implications of these investigations may be limited by the trauma associated with their experimental methods (e.g., cardiopulmonary bypass or transection of the spinal cord). The present study avoided such trauma.

Methods

Thirty goats received emulsified isoflurane via either the initial section of the aorta (arterial group; preferential isoflurane delivery to the spinal cord) or an ear vein (venous group; equal delivery of isoflurane to the cord and brain). The authors determined the minimum partial pressure of isoflurane (the isoflurane partial pressure in the blood required to produce immobility in 50% of the goats exposed to a noxious stimulus).

Results

For the venous group, the minimum partial pressure in carotid versus femoral arterial blood (9.56 +/- 1.86 mmHg vs. 9.68 +/- 1.90 mmHg) did not differ. For the arterial group, the minimum partial pressure in carotid arterial blood was half that in femoral arterial blood (5.35 +/- 1.45 mmHg vs. 10.97 +/- 3.04 mmHg, P < 0.05). As these data show, the minimum partial pressure in femoral arterial blood did not differ for the arterial group versus the venous group.

Conclusions

In this novel and minimally traumatic model, the anesthetic partial pressure delivered to the spinal cord governed the suppression of movement in response to noxious stimulation. The results indicate that the spinal cord is the primary mediator of immobility and that the brain plays little or no role.
Isoflurane Suppresses Stress-enhanced Fear Learning in a Rodent Model of Post–Traumatic Stress Disorder
Authors: Rau Vinuta , Oh Irene , Laster Michael , Eger Edmond I. , Fanselow Michael S.
Published: February 2009

Background

A minority of patients who experience awareness and/or pain during surgery subsequently develop post-traumatic stress disorder. In a rodent model of post-traumatic stress disorder, stress-enhanced fear learning (SEFL), rats are preexposed to a stressor of 15 foot shocks. Subsequent exposure to a single foot shock produces an enhanced fear response. This effect is akin to sensitized reactions shown by some post-traumatic stress disorder patients to cues previously associated with the traumatic event.

Methods

The authors studied the effect of isoflurane and nitrous oxide on SEFL. Rats were exposed to the inhaled anesthetic during or after a 15-foot shock stressor. Then, rats were given a single foot shock in a different environment. Their fear response was quantified in response to the 15-foot shock and single-foot shock environments. SEFL longevity was tested by placing a 90-day period between the 15 foot shocks and the single foot shock. In addition, the intensity of the foot shock was increased to evaluate treatment effectiveness.

Results

Increasing isoflurane concentrations decreased SEFL when given during, but not after, the stressor. At 0.40 minimum alveolar concentration (MAC), isoflurane given during the stressor blocked SEFL 90 days later. A threefold increase in the stressor intensity increased the isoflurane concentration required to block SEFL to no more than 0.67 MAC. As with isoflurane, nitrous oxide suppressed SEFL at a similar MAC fraction.

Conclusions

These results suggest that sufficient concentrations (perhaps 0.67 MAC or less) of an inhaled anesthetic may prevent SEFL.
Neonatal Exposure to Sevoflurane Induces Abnormal Social Behaviors and Deficits in Fear Conditioning in Mice
Authors: Satomoto Maiko , Satoh Yasushi , Terui Katsuo , Miyao Hideki , Takishima Kunio , Ito Masataka , Imaki Junko
Published: February 2009

Background

Neonatal exposure to anesthetics that block N-methyl-D-aspartate receptors and/or hyperactivate gamma-aminobutyric acid type A receptor has been shown to cause neuronal degeneration in the developing brain, leading to functional deficits later in adulthood. The authors investigated whether exposure of neonatal mice to inhaled sevoflurane causes deficits in social behavior as well as learning disabilities.

Methods

Six-day-old C57BL/6 mice were exposed to 3% sevoflurane for 6 h. Activated cleaved caspase-3 immunohistochemical staining was used for detection of apoptosis. Cognitive functions were tested by pavlovian conditioned fear test. Social behavior was tested by social recognition and interaction tests.

Results

Neonatal exposure to sevoflurane significantly increased the number of apoptotic cells in the brain immediately after anesthesia. It caused persistent learning deficits later in adulthood as evidenced by decreased freezing response in both contextual and cued fear conditioning. The social recognition test demonstrated that mice with neonatal exposure to sevoflurane did not develop social memory. Furthermore, these mice showed decreased interactions with a social target compared with controls in the social interaction test, indicating a social interaction deficit. The authors did not attribute these abnormalities in social behavior to impairments of general interest in novelty or olfactory sensation, because they did not detect significant differences in the test for novel inanimate object interaction or for olfaction.

Conclusions

This study shows that exposure of neonatal mice to inhaled sevoflurane could cause not only learning deficits but also abnormal social behaviors resembling autism spectrum disorder.
Adaptive Support and Pressure Support Ventilation Behavior in Response to Increased Ventilatory Demand
Authors: Jaber Samir , Sebbane Mustapha , Verzilli Daniel , Matecki Stefan , Wysocki Marc , Eledjam Jean-Jacques , Brochard Laurent
Published: February 2009

Background

Dual-control modes of ventilation adapt the pressure delivery to keep a volume target in response to changes in respiratory mechanics, but they may respond poorly to changes in ventilatory demand. Adaptive support ventilation (ASV), a complex minute volume-targeted pressure-regulated ventilation, was compared to adaptive pressure ventilation (APV), a dual-mode in which the pressure level is adjusted to deliver a preset tidal volume, and to pressure support ventilation (PSV) when facing an increase in ventilatory demand.

Methods

A total of 14 intensive care unit patients being weaned off mechanical ventilation were included in this randomized crossover study. The effect of adding a heat-and-moisture exchanger to augment circuit dead space was assessed with a same fixed level of ASV, PSV, and APV.

Results

Arterial blood gases, ventilator response, and patient respiratory effort parameters were evaluated at the end of the six periods. Adding dead space significantly increased minute ventilation and PaCO2 values with the three modes. Indexes of respiratory effort (pressure-time index of respiratory muscles and work of breathing) increased with all ventilatory modes after dead-space augmentation. This increase was significantly greater with APV than with PSV or ASV (P < 0.05). The assistance delivered during APV decreased significantly with dead-space from 12.7 +/- 2.6 to 6.7 +/- 1.4 cm H2O, whereas no change occurred with ASV and PSV.

Conclusions

ASV and PSV behaved differently but ended up with similar pressure level facing acute changes in ventilatory demand, by contrast to APV (a simple volume-guaranteed pressure-control mode), in which an increase in ventilatory demand results in a decrease in the pressure support provided by the ventilator.
Comparative Effects of Halogenated Inhaled Anesthetics on Voltage-gated Na+Channel Function
Authors: Ouyang Wei , Herold Karl F. , Hemmings Hugh C.
Published: February 2009

Background

Inhibition of voltage-gated Na channels (Na(v)) is implicated in the synaptic actions of volatile anesthetics. We studied the effects of the major halogenated inhaled anesthetics (halothane, isoflurane, sevoflurane, enflurane, and desflurane) on Na(v)1.4, a well-characterized pharmacological model for Na(v) effects.

Methods

Na currents (I(Na)) from rat Na(v)1.4 alpha-subunits heterologously expressed in Chinese hamster ovary cells were analyzed by whole cell voltage-clamp electrophysiological recording.

Results

Halogenated inhaled anesthetics reversibly inhibited Na(v)1.4 in a concentration- and voltage-dependent manner at clinical concentrations. At equianesthetic concentrations, peak I(Na) was inhibited with a rank order of desflurane > halothane approximately enflurane > isoflurane approximately sevoflurane from a physiologic holding potential (-80 mV). This suggests that the contribution of Na channel block to anesthesia might vary in an agent-specific manner. From a hyperpolarized holding potential that minimizes inactivation (-120 mV), peak I(Na) was inhibited with a rank order of potency for tonic inhibition of peak I(Na) of halothane > isoflurane approximately sevoflurane > enflurane > desflurane. Desflurane produced the largest negative shift in voltage-dependence of fast inactivation consistent with its more prominent voltage-dependent effects. A comparison between isoflurane and halothane showed that halothane produced greater facilitation of current decay, slowing of recovery from fast inactivation, and use-dependent block than isoflurane.

Conclusions

Five halogenated inhaled anesthetics all inhibit a voltage-gated Na channel by voltage- and use-dependent mechanisms. Agent-specific differences in efficacy for Na channel inhibition due to differential state-dependent mechanisms creates pharmacologic diversity that could underlie subtle differences in anesthetic and nonanesthetic actions.