bluuebunny/crossref_metadata_2025 huggingface dataset:
Emergent coordination underlying learning to reach to grasp with a brain-machine interface
Authors: Vaidya Mukta , Balasubramanian Karthikeyan , Southerland Joshua , Badreldin Islam , Eleryan Ahmed , Shattuck Kelsey , Gururangan Suchin , Slutzky Marc , Osborne Leslie , Fagg Andrew , Oweiss Karim , Hatsopoulos Nicholas G.
Published: January 2018

The development of coordinated reach-to-grasp movement has been well studied in infants and children. However, the role of motor cortex during this development is unclear because it is difficult to study in humans. We took the approach of using a brain-machine interface (BMI) paradigm in rhesus macaques with prior therapeutic amputations to examine the emergence of novel, coordinated reach to grasp. Previous research has shown that after amputation, the cortical area previously involved in the control of the lost limb undergoes reorganization, but prior BMI work has largely relied on finding neurons that already encode specific movement-related information. In this study, we taught macaques to cortically control a robotic arm and hand through operant conditioning, using neurons that were not explicitly reach or grasp related. Over the course of training, stereotypical patterns emerged and stabilized in the cross-covariance between the reaching and grasping velocity profiles, between pairs of neurons involved in controlling reach and grasp, and to a comparable, but lesser, extent between other stable neurons in the network. In fact, we found evidence of this structured coordination between pairs composed of all combinations of neurons decoding reach or grasp and other stable neurons in the network. The degree of and participation in coordination was highly correlated across all pair types. Our approach provides a unique model for studying the development of novel, coordinated reach-to-grasp movement at the behavioral and cortical levels.

NEW & NOTEWORTHY Given that motor cortex undergoes reorganization after amputation, our work focuses on training nonhuman primates with chronic amputations to use neurons that are not reach or grasp related to control a robotic arm to reach to grasp through the use of operant conditioning, mimicking early development. We studied the development of a novel, coordinated behavior at the behavioral and cortical level, and the neural plasticity in M1 associated with learning to use a brain-machine interface.
Comparison of acute kidney injury of different etiology reveals in-common mechanisms of tissue damage
Authors: Hultström Michael , Becirovic-Agic Mediha , Jönsson Sofia
Published: January 2018

Acute kidney injury (AKI) is a syndrome of reduced glomerular filtration rate and urine production caused by a number of different diseases. It is associated with renal tissue damage. This tissue damage can cause tubular atrophy and interstitial fibrosis that leads to nephron loss and progression of chronic kidney disease (CKD). This review describes the in-common mechanisms behind tissue damage in AKI caused by different underlying diseases. Comparing six high-quality microarray studies of renal gene expression after AKI in disease models (gram-negative sepsis, gram-positive sepsis, ischemia-reperfusion, malignant hypertension, rhabdomyolysis, and cisplatin toxicity) identified 5,254 differentially expressed genes in at least one of the AKI models; 66% of genes were found only in one model, showing that there are unique features to AKI depending on the underlying disease. There were in-common features in the form of four genes that were differentially expressed in all six models, 49 in at least five, and 215 were found in common between at least four models. Gene ontology enrichment analysis could be broadly categorized into the injurious processes hypoxia, oxidative stress, and inflammation, as well as the cellular outcomes of cell death and tissue remodeling in the form of epithelial-to-mesenchymal transition. Pathway analysis showed that MYC is a central connection in the network of activated genes in-common to AKI, which suggests that it may be a central regulator of renal gene expression in tissue injury during AKI. The outlining of this molecular network may be useful for understanding progression from AKI to CKD.
Genetic and microbiome influence on lipid metabolism and dyslipidemia
Authors: Matey-Hernandez Maria Luisa , Williams Frances M. K. , Potter Tilly , Valdes Ana M. , Spector Tim D. , Menni Cristina
Published: January 2018

Disruption in the metabolism of lipids is broadly classified under dyslipidemia and relates to the concentration of lipids in the blood. Dyslipidemia is a predictor of cardio-metabolic disease including obesity. Traditionally, the large interindividual variation has been related to genetic factors and diet. Genome-wide association studies have identified over 150 loci related to abnormal lipid levels, explaining ~40% of the total variation. Part of the unexplained variance has been attributed to environmental factors including diet, but the extent of the dietary contribution remains unquantified. Furthermore, other factors are likely to influence lipid metabolism including the gut microbiome, which plays an important role in the digestion of different dietary components including fats and polysaccharides. Here we describe the contributing role of host genetics and the gut microbiome to dyslipidemia and discuss the potential therapeutic implications of advances in understanding the gut microbiome to the treatment of dyslipidemia.
Mirror Syndrome in Monochorionic Twin Pregnancy with Acardiac Fetus
Authors: Ortiz Luiz Felipe Lessa , Elito Júnior Julio , Araujo Júnior Edward , Peixoto Alberto Borges , Sass Nelson , Moron Antonio Fernandes
Published: January 2018

We report the case of a 20-year-old patient, primigravida, with twin monochorionic pregnancy, with a weight gain of 6 kg in one week and increased blood pressure. During the ultrasound diagnostic investigation, placental edema and hydrops were identified in both fetuses, which, in association with maternal anasarca and pressure control, constitute the triad for mirror syndrome, also known as triple edema. In addition to being hydropic, one of the twins was an acardiac fetus, which is a rare combination of events. Gestation was terminated at 22 weeks and five days because of high maternal risk. The patient progressed with clinical and laboratory improvement. Our study is relevant in that it documents an extremely rare case and discusses relevant aspects of the symptoms and diagnosis of mirror syndrome. It also systematically reviews the condition.
Free Intraperitoneal Gallstone: An Unusual Case of Small Bowel Obstruction from Extrinsic Compression
Authors: Tiang Kor Woi , So Hang Fai , Hwang Yang , Siddaiah-Subramanya Manjunath
Published: January 2018

Laparoscopic cholecystectomy (LC) is preferred in the treatment of symptomatic cholecystolithiasis. Gallstone spillage is not uncommon, and there have been reports of associated complications. We report a case of a free intraperitoneal gallstone, left inadvertently during LC, which developed an inflammatory phlegmon with abscess containing gallstone, causing extraluminal compression on the distal ileum, resulting in small bowel obstruction. This complication in particular is almost unheard of. The patient underwent laparoscopic drainage of abscess and retrieval of gallstone, which relieved the obstruction. Clinicians, therefore, need to keep an open mind in the workup for bowel obstruction. During LC, gallstone spillage should be prevented and retrieved whenever possible to minimize early and late complications associated with it.
Whole-Exome Sequencing Identified a Novel Compound Heterozygous Mutation of LRRC6 in a Chinese Primary Ciliary Dyskinesia Patient
Authors: Liu Lv , Luo Hong
Published: January 2018

Primary ciliary dyskinesia (PCD) is a clinical rare peculiar disorder, mainly featured by respiratory infection, tympanitis, nasosinusitis, and male infertility. Previous study demonstrated it is an autosomal recessive disease and by 2017 almost 40 pathologic genes have been identified. Among them are the leucine-rich repeat- (LRR-) containing 6 (LRRC6) codes for a 463-amino-acid cytoplasmic protein, expressed distinctively in motile cilia cells, including the testis cells and the respiratory epithelial cells. In this study, we applied whole-exome sequencing combined with PCD-known genes filtering to explore the genetic lesion of a PCD patient. A novel compound heterozygous mutation in LRRC6 (c.183T>G/p.N61K; c.179-1G>A) was identified and coseparated in this family. The missense mutation (c.183T>G/p.N61K) may lead to a substitution of asparagine by lysine at position 61 in exon 3 of LRRC6. The splice site mutation (c.179-1G>A) may cause a premature stop codon in exon 4 and decrease the mRNA levels of LRRC6. Both mutations were not present in our 200 local controls, dbSNP, and 1000 genomes. Three bioinformatics programs also predicted that both mutations are deleterious. Our study not only further supported the importance of LRRC6 in PCD, but also expanded the spectrum of LRRC6 mutations and will contribute to the genetic diagnosis and counseling of PCD patients.
Evidence-Based Cutoff Threshold Values from Receiver Operating Characteristic Curve Analysis for Knee Osteoarthritis in the 50-Year-Old Korean Population: Analysis of Big Data from the National Health Insurance Sharing Service
Authors: Jee Hyunseok , Lee Hae-Dong , Lee Sae Yong
Published: January 2018

We aimed to investigate the characteristics of patients with osteoarthritis (OA), using the data of all Koreans registered in the National Health Insurance Sharing Service Database (NHISS DB), and to provide ideal alternative cutoff thresholds for alleviating OA symptoms. Patients with OA (codes M17 and M17.1–M17.9 in the Korean Standard Classification of Disease and Causes of Death) were analyzed using SAS software. Optimal cutoff thresholds were determined using receiver operating characteristic curve analysis. The 50-year age group was the most OA pathogenic group (among 40~70 years, n=2088). All exercise types affected the change of body mass index (p<0.05) and the sex difference in blood pressure (BP) (p<0.01). All types of exercise positively affected the loss of waist circumference and the balance test (standing time on one leg in seconds) (p<0.01). The cutoff threshold for the time in seconds from standing up from a chair to walking 3 m and returning to the same chair was 8.25 (80% sensitivity and 100% specificity). By using the exercise modalities, categorized multiple variables, and the cutoff threshold, an optimal alternative exercise program can be designed for alleviating OA symptoms in the 50-year age group.
Percutaneous High Frequency Microwave Ablation of Uterine Fibroids: Systematic Review
Authors: Ierardi Anna Maria , Savasi Valeria , Angileri Salvatore Alessio , Petrillo Mario , Sbaraini Sara , Pinto Antonio , Hanozet Francesco , Marconi Anna Maria , Carrafiello Gianpaolo
Published: January 2018

Uterine fibroids are the most common benign pelvic tumor of the female genital tract and tend to increase with age; they cause menorrhagia, dysmenorrhea, pelvic pressure symptoms, back pain, and subfertility. Currently, the management is based mainly on medical or surgical approaches. The nonsurgical and minimally invasive therapies are emerging approaches that to the state of the art include uterine artery embolization (UAE), image-guided thermal ablation techniques like magnetic resonance-guided focused ultrasound surgery (MRgFUS) or radiofrequency ablation (RF), and percutaneous microwave ablation (PMWA). The purpose of the present review is to describe feasibility results and safety of PMWA according to largest studies available in current literature. Moreover technical aspects of the procedure were analyzed providing important data on large scale about potential efficacy of PMWA in clinical setting. However larger studies with international registries and randomized, prospective trials are still needed to better demonstrate the expanding benefits of PMWA in the management of uterine fibroids.
Oil Palm Counting and Age Estimation from WorldView-3 Imagery and LiDAR Data Using an Integrated OBIA Height Model and Regression Analysis
Authors: Rizeei Hossein Mojaddadi , Shafri Helmi Z. M. , Mohamoud Mohamed Ali , Pradhan Biswajeet , Kalantar Bahareh
Published: January 2018

The current study proposes a new method for oil palm age estimation and counting from Worldview-3 satellite image and light detection and range (LiDAR) airborne imagery. A support vector machine algorithm (SVM) of object-based image analysis (OBIA) was implemented for oil palm counting. The sensitivity analysis was conducted on four SVM kernel types with associated segmentation parameters to obtain the optimal crown coverage delineation. Extracting tree’s crown was integrated with height model and multiregression methods to accurately estimate the age of trees. The multiregression model with multikernel sizes was examined to achieve the most optimized model for age estimation. Applied models were trained and examined over five different oil palm plantations. The results of oil palm counting had an overall accuracy of 98.80%, while the overall accuracy of age estimation showed 84.91%, over all blocks. The relationship between tree’s height and age was significant which supports the polynomial regression function (PRF) model with a 3×3 kernel size for under 10–12-year-old oil palm trees, while exponential regression function (ERF) is more fitted for older trees (i.e., 22 years old). Overall, recent remote sensing dataset and machine learning techniques are useful in monitoring and detecting oil palm plantation to maximize productivity.
Prostaglandin E1 Preconditioning Attenuates Liver Ischemia Reperfusion Injury in a Rat Model of Extrahepatic Cholestasis
Authors: Xu Feng , Liu Xiaolin , Wang Chao , Dai Chaoliu
Published: January 2018

The aim of this study is to explore the hepatoprotective effect of intraportal prostaglandin E1 (PGE1) on liver ischemia reperfusion (IR) injury using an extrahepatic cholestatic model, observing oxidative stress markers, proinflammatory factors, apoptotic marker proteins, and an adhesion molecule. The extrahepatic cholestatic model was induced by common bile duct ligation. After seven days, rats were subjected to ischemia by Pringle maneuver for 15 min, followed by 1, 6, or 24 h of reperfusion. Prostaglandin E1 (PGE group) or normal saline (NS group) was continuously infused from 15 min before liver ischemia to 1 h after reperfusion. After reperfusion, histopathological evaluation of the liver was performed, as were measurements of bilirubin, biochemical enzymes, oxidative stress markers (GSH and MDA), proinflammatory factors (MPO, TNF-α, and IL-1β), apoptotic marker proteins (Bcl-2 and Bax), and the adhesion molecule (ICAM-1). PGE1 pretreatment attenuated IR injury in extrahepatic cholestatic liver probably by suppressing MDA, MPO, TNF-α, IL-1β, ICAM-1, and Bax levels and improving GSH and Bcl-2 levels. In conclusion, PGE1 protects extrahepatic cholestatic liver from IR injury by improving hepatic microcirculation and reducing oxidative stress damage, intrahepatic neutrophil infiltration, and hepatocyte apoptosis.
DPP-4 Inhibitors as Treatments for Type 1 Diabetes Mellitus: A Systematic Review and Meta-Analysis
Authors: Wang Qixian , Long Min , Qu Hua , Shen Rufei , Zhang Rui , Xu Jing , Xiong Xin , Wang Hui , Zheng Hongting
Published: January 2018

Objective. Several clinical studies have reported the application of dipeptidyl peptidase-4 (DPP-4) inhibitors as treatments for type 1 diabetes mellitus (T1DM). This study aims to review the outcomes of these existing studies and to discuss the therapeutic effects of DPP-4 inhibitors on T1DM. Methods. We thoroughly searched the Medline, Embase, PubMed, and Cochrane Library databases and ClinicalTrials.gov for studies concerning the use of DPP-4 inhibitors in patients with T1DM. Results. In preclinical trials, DPP-4 inhibitors improved the pathogenesis of T1DM. However, only a portion of the studies showed potential efficacy regarding clinical glycemic control and other clinical parameters. From this meta-analysis, pooled data from 5 randomized controlled trials revealed that the additional use of DPP-4 inhibitors resulted in a greater decrease in glycated hemoglobin A1c (HbA1c) levels (0.07%, 95% CI (−0.37%–0.23%)) than insulin monotherapy, although the decrease was not significant. A small decrease in postprandial glucose or insulin consumption was confirmed. Conclusion. Although DPP-4 inhibitors may be beneficial for T1DM, existing studies do not strongly support these positive effects in clinical practice. Further optimized clinical trials are needed.
Ion Channel Expression and Characterization in Human Induced Pluripotent Stem Cell-Derived Cardiomyocytes
Authors: Zhao Zhihan , Lan Huan , El-Battrawy Ibrahim , Li Xin , Buljubasic Fanis , Sattler Katherine , Yücel Gökhan , Lang Siegfried , Tiburcy Malte , Zimmermann Wolfram-Hubertus , Cyganek Lukas , Utikal Jochen , Wieland Thomas , Borggrefe Martin , Zhou Xiao-Bo , Akin Ibrahim
Published: January 2018

Background. Human induced pluripotent stem cell-derived cardiomyocytes (hiPSC-CMs) are providing new possibilities for the biological study, cell therapies, and drug discovery. However, the ion channel expression and functions as well as regulations in hiPSC-CMs still need to be fully characterized. Methods. Cardiomyocytes were derived from hiPS cells that were generated from two healthy donors. qPCR and patch clamp techniques were used for the study. Results. In addition to the reported ion channels, INa, ICa-L, ICa-T, If, INCX, IK1, Ito, IKr, IKs IKATP, IK-pH, ISK1–3, and ISK4, we detected both the expression and currents of ACh-activated (KACh) and Na+-activated (KNa) K+, volume-regulated and calcium-activated (Cl-Ca) Cl−, and TRPV channels. All the detected ion currents except IK1, IKACh, ISK, IKNa, and TRPV1 currents contribute to AP duration. Isoprenaline increased ICa-L, If, and IKs but reduced INa and INCX, without an effect on Ito, IK1, ISK1–3, IKATP, IKr, ISK4, IKNa, ICl-Ca, and ITRPV1. Carbachol alone showed no effect on the tested ion channel currents. Conclusion. Our data demonstrate that most ion channels, which are present in healthy or diseased cardiomyocytes, exist in hiPSC-CMs. Some of them contribute to action potential performance and are regulated by adrenergic stimulation.
Membranous Nephropathy and Anti-Podocytes Antibodies: Implications for the Diagnostic Workup and Disease Management
Authors: Pozdzik Agnieszka , Brochériou Isabelle , David Cristina , Touzani Fahd , Goujon Jean Michel , Wissing Karl Martin
Published: January 2018

The discovery of circulating antibodies specific for native podocyte antigens has transformed the diagnostic workup and greatly improved management of idiopathic membranous nephropathy (iMN). In addition, their identification has clearly characterized iMN as a largely autoimmune disorder. Anti-PLA2R1 antibodies are detected in approximately 70% to 80% and anti-THSD7A antibodies in only 2% of adult patients with iMN. The presence of anti-THSD7A antibodies is associated with increased risk of malignancy. The assessment of PLA2R1 and THSD7A antigen expression in glomerular immune deposits has a better sensitivity than measurement of the corresponding autoantibodies. Therefore, in the presence of circulating anti-podocytes autoantibodies and/or enhanced expression of PLA2R1 and THSD7A antigens MN should be considered as primary MN (pMN). Anti-PLA2R1 or anti-THSD7A autoantibodies have been proposed as biomarkers of autoimmune disease activity and their blood levels should be regularly monitored in pMN to evaluate disease activity and predict outcomes. We propose a revised clinical workup flow for patients with MN that recommends assessment of kidney biopsy for PLA2R1 and THSD7A antigen expression, screening for circulating anti-podocytes antibodies, and assessment for secondary causes, especially cancer, in patients with THSD7A antibodies. Persistence of anti-podocyte antibodies for 6 months or their increase in association with nephrotic proteinuria should lead to the introduction of immunosuppressive therapies. Recent data have reported the efficacy and safety of new specific therapies targeting B cells (anti-CD20 antibodies, inhibitors of proteasome) in pMN which should lead to an update of currently outdated treatment guidelines.
Effect of Tofogliflozin on Body Composition and Glycemic Control in Japanese Subjects with Type 2 Diabetes Mellitus
Authors: Kamei Shinji , Iwamoto Masahiro , Kameyama Miyuki , Shimoda Masashi , Kinoshita Tomoe , Obata Atsushi , Kimura Tomohiko , Hirukawa Hidenori , Tatsumi Fuminori , Kohara Kenji , Nakanishi Shuhei , Mune Tomoatsu , Kaku Kohei , Kaneto Hideaki
Published: January 2018

Sodium-glucose cotransporter 2 inhibitor tofogliflozin is a new type of antidiabetic drug for individuals with type 2 diabetes mellitus (T2DM). The aim of this study was to examine in which type of individuals and/or under which conditions tofogliflozin could exert more beneficial effects on body composition and/or glycemic control in Japanese individuals with T2DM. We retrospectively evaluated the effects of tofogliflozin on body composition and/or glycemic control in individuals with T2DM who newly started taking tofogliflozin. After tofogliflozin treatment, body weight was significantly reduced and HbA1c levels were significantly decreased. Body fat mass, skeletal muscle mass, and skeletal muscle index, a marker for sarcopenia, were also reduced after the treatment. In univariate analyses, there was a statistically significant association between the decrease of HbA1c level after tofogliflozin treatment (Δ HbA1c) and the following parameters such as HbA1c levels at baseline, visceral fat area (VFA) at baseline, and reduction of VFA after the treatment (Δ VFA). Furthermore, in multivariate analyses, HbA1c levels at baseline and duration of diabetes were independently associated with Δ HbA1c. These results suggest that tofogliflozin would be more suitable for relatively obese individuals whose duration of diabetes is relatively short.
Inhibitor of Differentiation-3 and Estrogenic Endocrine Disruptors: Implications for Susceptibility to Obesity and Metabolic Disorders
Authors: Doke Mayur , Avecilla Vincent , Felty Quentin
Published: January 2018

The rising global incidence of obesity cannot be fully explained within the context of traditional risk factors such as an unhealthy diet, physical inactivity, aging, or genetics. Adipose tissue is an endocrine as well as a metabolic organ that may be susceptible to disruption by environmental estrogenic chemicals. Since some of the endocrine disruptors are lipophilic chemicals with long half-lives, they tend to bioaccumulate in the adipose tissue of exposed populations. Elevated exposure to these chemicals may predispose susceptible individuals to weight gain by increasing the number and size of fat cells. Genetic studies have demonstrated that the transcriptional regulator inhibitor of differentiation-3 (ID3) promotes high fat diet-induced obesity in vivo. We have shown previously that PCB153 and natural estrogen 17β-estradiol increase ID3 expression. Based on our findings, we postulate that ID3 is a molecular target of estrogenic endocrine disruptors (EEDs) in the adipose tissue and a better understanding of this relationship may help to explain how EEDs can lead to the transcriptional programming of deviant fat cells. This review will discuss the current understanding of ID3 in excess fat accumulation and the potential for EEDs to influence susceptibility to obesity or metabolic disorders via ID3 signaling.
Brain Network Alterations in Alzheimer’s Disease Identified by Early-Phase PIB-PET
Authors: Fu Liping , Liu Linwen , Zhang Jinming , Xu Baixuan , Fan Yong , Tian Jiahe
Published: January 2018

The aim of this study was to identify the brain networks from early-phase 11C-PIB (perfusion PIB, pPIB) data and to compare the brain networks of patients with differentiating Alzheimer’s disease (AD) with cognitively normal subjects (CN) and of mild cognitively impaired patients (MCI) with CN. Forty participants (14 CN, 12 MCI, and 14 AD) underwent 11C-PIB and 18F-FDG PET/CT scans. Parallel independent component analysis (pICA) was used to identify correlated brain networks from the 11C-pPIB and 18F-FDG data, and a two-sample t-test was used to evaluate group differences in the corrected brain networks between AD and CN, and between MCI and CN. Our study identified a brain network of perfusion (early-phase 11C-PIB) that highly correlated with a glucose metabolism (18F-FDG) brain network and colocalized with the default mode network (DMN) in an AD-specific neurodegenerative cohort. Particularly, decreased 18F-FDG uptake correlated with a decreased regional cerebral blood flow in the frontal, parietal, and temporal regions of the DMN. The group comparisons revealed similar spatial patterns of the brain networks derived from the 11C-pPIB and 18F-FDG data. Our findings indicate that 11C-pPIB derived from the early-phase 11C-PIB could provide complementary information for 18F-FDG examination in AD.
From 4D Medical Images (CT, MRI, and Ultrasound) to 4D Structured Mesh Models of the Left Ventricular Endocardium for Patient-Specific Simulations
Authors: Canè Federico , Verhegghe Benedict , De Beule Matthieu , Bertrand Philippe B. , Van der Geest Rob J. , Segers Patrick , De Santis Gianluca
Published: January 2018

With cardiovascular disease (CVD) remaining the primary cause of death worldwide, early detection of CVDs becomes essential. The intracardiac flow is an important component of ventricular function, motion kinetics, wash-out of ventricular chambers, and ventricular energetics. Coupling between Computational Fluid Dynamics (CFD) simulations and medical images can play a fundamental role in terms of patient-specific diagnostic tools. From a technical perspective, CFD simulations with moving boundaries could easily lead to negative volumes errors and the sudden failure of the simulation. The generation of high-quality 4D meshes (3D in space + time) with 1-to-1 vertex becomes essential to perform a CFD simulation with moving boundaries. In this context, we developed a semiautomatic morphing tool able to create 4D high-quality structured meshes starting from a segmented 4D dataset. To prove the versatility and efficiency, the method was tested on three different 4D datasets (Ultrasound, MRI, and CT) by evaluating the quality and accuracy of the resulting 4D meshes. Furthermore, an estimation of some physiological quantities is accomplished for the 4D CT reconstruction. Future research will aim at extending the region of interest, further automation of the meshing algorithm, and generating structured hexahedral mesh models both for the blood and myocardial volume.
Assessment of a Physicochemical Indexing Method for Evaluation of Tropical River Water Quality
Authors: Sim Siong Fong , Tai Szewei Elaine
Published: January 2018

This paper attempts to evaluate the Malaysian water quality indexing method that has been criticized for its ineffectiveness. The indexing method is referred to as the Water Quality Index of the Department of Environment, Malaysia (DOE-WQI). This index was assessed against two other indices (River Ganga Index and Minimal Water Quality Index (WQImin)) and a modified DOE-WQI was also proposed. DOE-WQI and WQImin are physicochemical indices, whereas the River Ganga Index and modified DOE-WQI are indices with the inclusion of a microbiological parameter. The assessment was conducted based on the water quality of tropical rivers in Malaysia, with specific reference to Sarawak River and its tributaries. Water quality in terms of pH, dissolved oxygen, conductivity, turbidity, total suspended solids, biochemical oxygen demand, chemical oxygen demand, ammoniacal nitrogen, and fecal coliform count (FCC) was measured from 18 stations in December 2015, January 2016, and March 2016. Generally, the river was characterized with high FCC with the four indices significantly correlated. The results demonstrated the shortcomings of the existing DOE-WQI; the physicochemical index assigned water quality to a better class than its actual conditions without taking into consideration the FCC.
Ruta chalepensis L. Essential Oil: A New Antisprouting Agent for Potatoes Bioconservation
Authors: Lengliz Olfa , Mejri Jamel , Abderrabba Manef , Khalifa Rachid , Mejri Mondher
Published: January 2018

The main concern of this work was to find a new biological antisprouting product for potatoes during storage. Ruta chalepensis L. essential oil (RCEO) was for the first time used as a potential sprouting inhibitor for potatoes. To confirm RCEO antisprouting effect, evolution of sprout length and weight loss of potato tubers was determined during a storage period of six weeks under three RCEO different treatments (2%, 4%, and 6%). Sprout final weight was also computed. Then, a screening of RCEO chemical composition was performed. An outstanding antisprouting effect of 6% emulsions concentrations was observed as compared to 2% and 4% emulsions concentrations. Final sprout weight (SW) of untreated samples was 4.66%, while 6% treated samples scored 0.98%. These results were endorsed by high Pearson correlation coefficients (>0.9). Indeed, increasing treatment concentration enhanced the sprout growth inhibition. Identification of RCEO major components showed that 2-undecanone represented 87.18% of total identified components suggesting that this component is the possible active agent of RCEO against potatoes sprouting.
Genomic Analyses and Precision Oncology in Gastroesophageal Cancer: Forwards or Backwards?
Authors: Sundar Raghav , Tan Patrick
Published: January 2018

Summary: Gastroesophageal adenocarcinoma (GEA) comprises a myriad of distinct subtypes with significant interpatient, intrapatient, and intratumor heterogeneity. Strategies for tackling molecular heterogeneity will be essential for the success of GEA precision oncology—in this regard, blood-based “liquid biopsies” may provide broader views of the real-time genomic landscape of this disease, identifying actionable biomarkers and monitoring therapy resistance. Cancer Discov; 8(1); 14–6. ©2018 AACR.

See related article by Pectasides et al., p. 37.

See related article by Janjigian et al., p. 49.
Computed Tomography Perfusion Derived Blood-Brain Barrier Permeability Does Not Yet Improve Prediction of Hemorrhagic Transformation
Authors: Horsch Alexander D. , Bennink Edwin , van Seeters Tom , Kappelle L. Jaap , van der Graaf Yolanda , Mali Willem P.T.M. , de Jong Hugo W.A.M. , Velthuis Birgitta K. , Dankbaar Jan Willem ,   on behalf of the DUST Investigators
Published: January 2018

Introduction: Hemorrhagic transformation (HT) in acute ischemic stroke can occur as a result of reperfusion treatment. While withholding treatment may be warranted in patients with increased risk of HT, prediction of HT remains difficult. Nonlinear regression analysis can be used to estimate blood-brain barrier permeability (BBBP). The aim of this study was to identify a combination of clinical and imaging variables, including BBBP estimations, that can predict HT. Materials and Methods: From the Dutch acute stroke study, 545 patients treated with intravenous recombinant tissue plasminogen activator and/or intra-arterial treatment were selected, with available admission extended computed tomography (CT) perfusion and follow-up imaging. Patient admission treatment characteristics and CT imaging parameters regarding occlusion site, stroke severity, and BBBP were recorded. HT was assessed on day 3 follow-up imaging. The association between potential predictors and HT was analyzed using univariate and multivariate logistic regression. To compare the added value of BBBP, areas under the curve (AUCs) were created from 2 models, with and without BBBP. Results: HT occurred in 57 patients (10%). In univariate analysis, older age (OR 1.03, 95% CI 1.006–1.05), higher admission National Institutes of Health Stroke Scale (NIHSS; OR 1.13, 95% CI 1.08–1.18), higher clot burden (OR 1.28, 95% CI 1.16–1.41), poor collateral score (OR 3.49, 95% CI 1.85–6.58), larger Alberta Stroke Program Early CT Score cerebral blood volume deficit size (OR 1.26, 95% CI 1.14–1.38), and increased BBBP (OR 2.22, 95% CI 1.46–3.37) were associated with HT. In multivariate analysis with age and admission NIHSS, the addition of BBBP did not improve the AUC compared to both independent predictors alone (AUC 0.77, 95% CI 0.71–0.83). Conclusion: BBBP predicts HT but does not improve prediction with age and admission NIHSS.
Genetic and Environmental Effects on Gene Expression Signatures of Blood Pressure
Authors: Huang Yisong , Ollikainen Miina , Sipilä Pyry , Mustelin Linda , Wang Xin , Su Shaoyong , Huan Tianxiao , Levy Daniel , Wilson James , Snieder Harold , Kaprio Jaakko , Wang Xiaoling
Published: January 2018

Recently, 2 transcriptome-wide studies identified 40 genes that were differentially expressed in relation to blood pressure. However, to what extent these BP-related gene expression signatures and their associations with BP are driven by genetic or environmental factors has not been investigated. In this study of 391 twins (193 twin pairs and 5 singletons; age 55–69 years; 40% male; 57% monozygous) recruited from the Finnish Twin Cohort, transcriptome-wide data on peripheral leukocytes were obtained using the Illumina HT12 V4 array. Our transcriptome-wide analysis identified 1 gene (
MOK
[MAPK/MAK/MRK overlapping kinase],
P
=7.16×10
−
8
) with its expression levels associated with systolic BP at the cutoff of false-discovery rate <0.05. This association was further replicated in the Framingham Heart Study (
P
=1.02×10
−
5
). Out of the 40 genes previously reported, 12 genes could be replicated in the twin cohort with false-discovery rate <0.05 and consistent direction of effect. Univariate twin modeling showed that genetic factors contributed to the expression variations of 12 genes with heritability estimates ranging from 6% to 65%. Bivariate twin modeling showed that 53% of the phenotypic association between systolic BP and
MOK
expression, and 100% of the phenotypic association of systolic and diastolic BP with
CD97
(cluster of differentiation 97),
TIPARP
(TCDD-inducible poly[ADP-ribose] polymerase), and
TPPP3
expression could be explained by genetic factors shared in common. In this study of adult twins, we identified one more gene,
MOK
, with its expression level associated with BP, and replicated several previously identified signals. Our study further provides new insights into the genetic and environmental sources of BP-related gene expression signatures.
STARTING-SICH Nomogram to Predict Symptomatic Intracerebral Hemorrhage After Intravenous Thrombolysis for Stroke
Authors: Cappellari Manuel , Turcato Gianni , Forlivesi Stefano , Zivelonghi Cecilia , Bovi Paolo , Bonetti Bruno , Toni Danilo
Published: January 2018

Background and Purpose—

Symptomatic intracerebral hemorrhage (sICH) is a rare but the most feared complication of intravenous thrombolysis for ischemic stroke. We aimed to develop and validate a nomogram for individualized prediction of sICH in intravenous thrombolysis–treated stroke patients included in the multicenter SITS-ISTR (Safe Implementation of Thrombolysis in Stroke-International Stroke Thrombolysis Register).

Methods—

All patients registered in the SITS-ISTR by 179 Italian centers between May 2001 and March 2016 were originally included. The main outcome measure was sICH per the European Cooperative Acute Stroke Study II definition (any type of intracerebral hemorrhage with increase of ≥4 National Institutes of Health Stroke Scale score points from baseline or death <7 days). On the basis of multivariate logistic model, the nomogram was generated. We assessed the discriminative performance by using the area under the receiver-operating characteristic curve and calibration of risk prediction model by using the Hosmer–Lemeshow test.

Results—

A total of 15 949 patients with complete data for generating the nomogram was randomly dichotomized into training (3/4; n=12 030) and test (1/4; n=3919) sets. After multivariate logistic regression, 10 variables remained independent predictors of sICH to compose the STARTING-SICH (systolic blood pressure, age, onset-to-treatment time for thrombolysis, National Institutes of Health Stroke Scale score, glucose, aspirin alone, aspirin plus clopidogrel, anticoagulant with INR ≤1.7, current infarction sign, hyperdense artery sign) nomogram. The area under the receiver-operating characteristic curve of STARTING-SICH was 0.739. Calibration was good (
P
=0.327 for the Hosmer–Lemeshow test).

Conclusions—

The STARTING-SICH is the first nomogram developed and validated in a large SITS-ISTR cohort for individualized prediction of sICH in intravenous thrombolysis–treated stroke patients.
Revised Framingham Stroke Risk Score, Nontraditional Risk Markers, and Incident Stroke in a Multiethnic Cohort
Authors: Flueckiger Peter , Longstreth Will , Herrington David , Yeboah Joseph
Published: January 2018

Background and Purpose—

Limited data exist on the performance of the revised Framingham Stroke Risk Score (R-FSRS) and the R-FSRS in conjunction with nontraditional risk markers. We compared the R-FSRS, original FSRS, and the Pooled Cohort Equation for stroke prediction and assessed the improvement in discrimination by nontraditional risk markers.

Methods—

Six thousand seven hundred twelve of 6814 participants of the MESA (Multi-Ethnic Study of Atherosclerosis) were included. Cox proportional hazard, area under the curve, net reclassification improvement, and integrated discrimination increment analysis were used to assess and compare each stroke prediction risk score. Stroke was defined as fatal/nonfatal strokes (hemorrhagic or ischemic).

Results—

After mean follow-up of 10.7 years, 231 of 6712 (3.4%) strokes were adjudicated (2.7% ischemic strokes). Mean stroke risks using the R-FSRS, original FSRS, and Pooled Cohort Equation were 4.7%, 5.9%, and 13.5%. The R-FSRS had the best calibration (Hosmer–Lemeshow goodness-of-fit, χ
2
=6.55;
P
=0.59). All risk scores were predictive of incident stroke. C statistics of R-FSRS (0.716) was similar to Pooled Cohort Equation (0.716), but significantly higher than the original FSRS (0.653;
P
=0.01 for comparison with R-FSRS). Adding nontraditional risk markers individually to the R-FSRS did not improve discrimination of the R-FSRS in the area under the curve analysis, but did improve category-less net reclassification improvement and integrated discrimination increment for incident stroke. The addition of coronary artery calcium to R-FSRS produced the highest category-less net reclassification improvement (0.36) and integrated discrimination increment (0.0027). Similar results were obtained when ischemic strokes were used as the outcome.

Conclusions—

The R-FSRS downgraded stroke risk but had better calibration and discriminative ability for incident stroke compared with the original FSRS. Nontraditional risk markers modestly improved the discriminative ability of the R-FSRS, with coronary artery calcium performing the best.
Ecological preferences of Hyla molleri in the colonisation of arboreal refuges in a human-shaped wetland
Authors: do Vale Rita Lacerda , Torres Inês , Gomes Sara , Fonseca Carlos , Ferreira Eduardo
Published: January 2018

Hyla molleri is well adapted to arboreal microhabitats, which are used among breeding seasons. This species is common in wetlands across the Iberian Peninsula and is therefore vulnerable to the loss and degradation of these ecosystems. Due to its secretive habits, the knowledge about the ecology of H. molleri, outside the breeding season, is still scarce. Using artificial refuges as a proxy to natural refuges, we studied how H. molleri uses arboreal microhabitats near reproductive areas and which environmental drivers influence refuge colonisation. We installed 70 PVC pipe refuges in isolated trees and tree patches. Pairs of pipes were installed at two different heights and monitored fortnightly, for four consecutive days, for one year. Each sampling day, we registered the values of variables related with seasonality, microhabitat, dominant plant species, weather and site fidelity. We recorded 2234 individual colonization events by H. molleri, including 516 multiple colonization events, with a maximum of nine individuals in a single refuge. Refuges that were colonized before were more likely to be colonized again. Additionally, colonization was lower in spring and summer and higher in tree clusters than in isolated trees. We found no significant differences on the height or temperature of colonized versus non-colonized refuges. Our results highlight the importance of adequate arboreal microhabitats and the need for the conservation of terrestrial habitats around breeding areas. We also show that artificial refuges can be useful for H. molleri and similar species, namely for habitat improvement or the implementation of citizen-science and monitoring programs.
A common toad hybrid zone that runs from the Atlantic to the Mediterranean
Authors: Arntzen Jan W. , McAtear Jacob , Butôt Roland , Martínez-Solano Iñigo
Published: January 2018

We document the distribution of the common toad Bufo bufo and the spined toad B. spinosus at their contact zone across France with data from a mitochondrial DNA RFLP assay, complementing similar work including nuclear markers in the northwest and southeast of France and in Italy. We also reconstruct geographical clines across the species’ contact zone in central France. Bufo bufo is found in the north-eastern half of France. Bufo spinosus is found in the south-western complement. The contact zone they form runs from the Atlantic coast near Caen, France, to the Mediterranean coast near Savona, Italy, and has a length of over 900 km. In central France B. bufo and B. spinosus engage in a hybrid zone with a unimodal genetic signature. Hybrid zone width is ca. 10 km at mitochondrial DNA and averages at 61 km for four nuclear loci. The hybrid zone is distinctly asymmetric with a signature of B. spinosus in B. bufo and not the other way round. We attribute this observation to B. bufo moving southwards at the expense of B. spinosus, with introgression in the direction of the advancing species. We noted substantial geographic variation in characters for species identification. Morphological species identification performs well in France, but breaks down in Italy. Mitochondrial DNA is inconclusive in south-eastern France and Italy. The nuclear genetic markers perform consistently well but have not yet been applied to the zone in full. Possible, but surely heterogeneous ecological correlates for the position of the hybrid zone are mountains and rivers.
North American species of Diamphidaxona (Acari: Hydrachnida: Hygrobatidae)
Authors: SMITH IAN M. , COOK DAVID R.
Published: January 2018

Members of the genus Diamphidaxona Cook, 1963 are found from southeastern Canada to Argentina, with greatest diversity of species and species groups in the southwestern United States and Mexico. In this paper the three species of Diamphidaxona previously known from North America, D. pallida Cook, D. dolichosoma Cook and D. imamurai Cook, are redescribed. Eleven new species, including D. arizonica sp. nov., D. brevitarsa sp. nov., D. californica sp. nov., D. cavecreekensis sp. nov., D. chihuahua sp. nov., D. chiricahua sp. nov., D. cramerae sp. nov., D. neomexicana sp. nov., D. parvacetabula sp. nov., D. platysoma sp. nov. and D. sabinalensis sp. nov., are also described. North American species are allocated to two subgenera, the nominate subgenus and Diamphidaxonella subgen. nov., for which diagnoses are provided. New distributional data and a key for all North American species are presented.
On the morphology of the juvenile stages of Ampulex compressa (Fabricius 1781) (Hymenoptera, Ampulicidae)
Authors: FOX EDUARDO GONÇALVES PATERSON , BUYS SANDOR CRISTIANO , MALLET JACE-NIR REIS DOS SANTOS , BRESSAN-NASCIMENTO SUZETE
Published: January 2018

Ampulex compressa is a cockroach-hunting ampulicid wasp. In this survey we describe its egg, mature larva, along with the 1 st and 2 nd larval instars and cocoon, with emphasis on the characters considered important to the phylogeny of apoid wasps. It shares the following traits with the Sphecidae: reduced head setae, absence of antennal papilla, three antennal sensilla on antennal orbit, broad and strongly emarginate labrum, and spinneret with prominent raised lips. In common with other Ampulicidae, it has integument of the body granulose and without setae, mandibles with four or five teeth and lacking basal setae, maxillary palp larger than galea and discrete parietal bands. Distinct from the other Ampulicidae, it has a deep median longitudinal groove in the area above the salivary lips, a distinct group of five sensilla on the subgenal area, and lacks spines on the spiracular peritreme.
Four new species of Scaphisoma Leach with maculate elytra (Coleoptera: Staphylinidae: Scaphidiinae) from Mexico, with new records and comments on S. balteatum Matthews
Authors: FIERROS-LÓPEZ HUGO EDUARDO
Published: January 2018

Four new species of Scaphisoma are described from Jalisco, Morelos and Oaxaca, Mexico: Scaphisoma jaliscanum sp. nov., S. cortesaguilari sp. nov., S. opochtli sp. nov. and S. versicolor sp. nov. New distributional records and comments on S. balteatum are included: it is recorded for the first time from Costa Rica and Jalisco. A key to Mexican species of Scaphisoma with maculate elytra and data on their fungal hosts are provided.
Description of the first Caribbean Oscarellidae (Porifera: Homoscleromorpha)
Authors: PEREZ THIERRY , RUIZ CESAR
Published: January 2018

The sponge class Homoscleromorpha has a challenging taxonomy and its systematics is still a matter of debate. A significant effort has recently been deployed to better evaluate the diversity of these sponges, and each new exploration of cryptic habitats reveals new species. Although several undescribed or wrongly determined Oscarella-like sponges have been reported by different authors, the Oscarellidae family still lacks description of its true Caribbean representatives. The exploration of various submarine caves in the Lesser Antilles has allowed us to find and to formally describe the first two Oscarellidae of the Caribbean Sea, Oscarella filipoi sp. nov. and Oscarella zoranja sp. nov. Both new species are quite common in semi-dark habitats throughout the Lesser Antilles. Moreover, O. filipoi sp. nov. is the largest Oscarellidae ever observed world-wide. Both species harbor a sylleibid aquiferous system and a high density of ovoid to spherical choanocyte chambers. The molecular taxonomy clearly shows their affiliation to the Oscarella clade containing the type species of the Oscarellidae family. In addition to their growth forms, these two species differ in the shape of their mesohylar cells, and in the degree of development of their basal region. This latter trait is particularly remarkable in large specimens of O. filipoi which can have a very thick ectosome.
A new species of Beebeomyia Curran (Diptera: Richardiidae) from Brazil, with description of immature stages and notes on their association with Taccarum ulei (Araceae)
Authors: WENDT LISIANE DILLI , GONÇALVES EDUARDO GOMES , MAIA ARTUR CAMPOS DÁLIA
Published: January 2018

A new species of the genus Beebeomyia Curran found in the northern coastal region of the state of Pernambuco, northeastern Brazil is described and illustrated, including characteristics of the male and female terminalia, third instar larva and puparium. This new species is only the second record for the genus in Brazil and broadens its occurrence to the Atlantic Forest ecoregion. Beebeomyia taccarivora sp. nov. is straightforwardly distinguishable from all other known species of Beebeomyia for exhibiting an entirely yellowish orange thorax with a central brown-colored stripe on the scutum, and a brownish orange abdomen with a central brown stripe on tergites 1–4. Similarly to what had been previously described for congenerics, female B. taccarivora flies exclusively use the inflorescences of their host plant, Taccarum ulei, as oviposition and brooding sites. Developing larvae feed on living floral tissue and pollen, and pupariation occurs within the inner surface of the spathe.