bluuebunny/crossref_metadata_2025 huggingface dataset:
Репрезентація Першої світової війни в ілюстрованій літературі (на прикладі збірки «Ein feste Burg» («Міцна фортеця») за ред. Б. Дерінга)
Authors: Кізима Юлія
Published: September 2024

Основною проблемою, проаналізованою у статті, є специфіка функціонування ілюстрованої літератури як засобу формування/cmруктурування уявлень про історичні події. Проблему розглянуто на прикладі репрезентації подій Першої світової війни в ілюстрованій збірці проповідей і промов німецьких євангельських священиків «Міцна фортеця» («Ein feste Burg»). На прикладах із твору продемонстровано кілька можливих шляхів взаємодії між текстовими та візуальними елементами у цьому типі медіа. Зокрема показано, як зображення полегшували процес структурування інформації, викладеної у вербальній формі; сприяли ідентифікації читача-глядача із персонажами і, як наслідок — більшій залученості (імерсії) у твір; унаочнювали абстрактні поняття. Нарешті, втілюючи образи, поширені у візуальній культурі періоду, вони брали участь у заміщенні пов’язаних із війною образів у свідомості читача-глядача на більш прийнятні з погляду психологічного комфорту та націоналістично-релігійної ідеології, яку просували автори та видавці.
Research progress of piezoelectric materials in protecting oral health and treating oral diseases: a mini-review
Authors: Yang Tingyu , Sa Rina , Wang Furong , Chen Chen , Zheng Lanbing
Published: September 2024

Piezoelectric materials, as a class of materials capable of generating electrical charges under mechanical vibration, have special piezoelectric effects and have been widely applied in various disease treatment fields. People generate vibrations in the oral cavity during daily activities such as brushing teeth, using electric toothbrushes, chewing, and speaking. These natural vibrations (or external ultrasound) provide ideal conditions for activating piezoelectric materials, leading to their high potential applications in protecting oral health and treating oral diseases. Based on this, this review reports on the research progress and trends of piezoelectric materials in the protection of oral health and the treatment of oral diseases in the past 5 years, and discusses its treatment mechanism, challenges and shortcomings, aiming to provide theoretical basis and new ideas for the future application of piezoelectric materials in the field of oral cavity. Finally, a brief outlook is provided, suggesting that the potential of piezoelectric materials may enable them to quickly move towards real clinical applications.
Therapeutic potential of ADSCs in diabetic wounds: a proteomics-based approach
Authors: Gu Yuan , Mu Zelan , Chen Yuanzheng , Wu Can , Shi Jie , Bai Nan
Published: September 2024

Background

Diabetes mellitus (DM), a chronic metabolic disease characterized by elevated blood sugar, leads to delayed or non-healing wounds, increasing amputation risks, and placing a significant burden on patients and society. While extensive research has been conducted on adipose-derived stem cells (ADSCs) for promoting wound healing, there is a scarcity of studies focusing on diabetic wounds, particularly those employing proteomics and bioinformatics approaches.

Objective

This study aimed to investigate the mechanisms by which ADSCs promote diabetic wound healing using proteomics and bioinformatics techniques.

Methods

Healthy rat fat tissue was used to isolate ADSCs. A T2DM rat model with back wounds was established. The experimental group received ADSC injections around the wound, while the control group received PBS injections. Wound healing rates were documented and photographed on days 0, 3, 7, 10, and 14. On day 7, wound tissues were excised for HE and Masson’s staining. Additionally, on day 7, tissues were analyzed for protein quantification using 4D-DIA, with subsequent GO and KEGG analyses for differentially expressed proteins (DEPs) and protein-protein interaction (PPI) network analysis using STRING database (String v11.5). Finally, Western blot experiments were performed on day 7 wounds to verify target proteins.

Results and Conclusions

In all measured days postoperatively, the wound healing rate was significantly higher in the ADSC group than in the PBS group (day 7: p < 0.001, day 10: p = 0.001, day 14: p < 0.01), except on day 3 (p > 0.05). Proteomic analysis identified 474 differentially expressed proteins, with 224 key proteins after PPI analysis (78 upregulated and 146 downregulated in the ADSC group). The main cellular locations of these proteins were “cellular anatomical entity” and “protein-containing complex”, while the biological processes were “cellular processes” and “biological regulation”. The primary molecular functions were “binding” and “catalytic activity”, with GO enrichment focused on “Wnt-protein binding”, “neural development”, and “collagen-containing extracellular matrix”. Further analysis of PPI network nodes using LASSO regression identified Thy1 and Wls proteins, significantly upregulated in the ADSC group, as potentially crucial targets for ADSC application in diabetic wound treatment.
A causal association between esophageal cancer and the oral microbiome: a Mendelian randomization study based on an Asian population
Authors: Hu Keke , Huang Ting , Zhang Yiming , Ye Zhifeng , Guo Junhua , Zhou Heran
Published: September 2024

Background

Previous studies have suggested a crosstalk between the oral microbiome and esophageal cancer (EC), but the exact relationship is unclear. This study aimed to investigate the causal relationship between changes in the oral microbiome and EC by Mendelian randomization (MR).

Materials and methods

In the study, bidirectional MR analyses were conducted using genome-wide association study data from the oral microbiomes from the 4D-SZ cohort and EC data from the BioBank Japan cohort. Multiple sensitivity tests, including Cochrane’s Q statistic, MR-Egger intercept, and MR-PRESSO, were used to assess and validate the relative stability of the resulting data at various levels.

Results

Among the 3,117 samples studied, 73 oral microbiomes were found to be statistically causally associated with EC, 38 of which were considered protective factors. According to species analyses, positive results were concentrated in three phyla: Firmicutes (29 species), Patescibacteria (18 species), and Actinobacteria (9 species). It was also determined that Parvimonas micra, Aggregatibacter, and Clostridia had a negative causal relationship, implying that EC caused a decrease in the counts. Following p-value correction, periodonticum_C, unclassified_mgs_3234, and unclassified_mgs_45 were identified as having a strong evidence-grade causal relationship with EC. There was no strong evidence in the results of the inverse MR analyses of EC to the oral microbiome. The sensitivity analysis confirmed the robustness of the findings.

Conclusion

This study discovered a bidirectional causal relationship between the oral microbiome and EC, which may provide new insights into the future use of the microbiome for early screening and probiotic therapy.
Mechanism of emodin in treating hepatitis B virus-associated hepatocellular carcinoma: network pharmacology and cell experiments
Authors: Wang Yupeng , Li Shuangxing , Ren Tianqi , Zhang Yikun , Li Bo , Geng Xingchao
Published: September 2024

Introduction

Hepatocellular carcinoma (HCC) is a pressing global issue, with Hepatitis B virus (HBV) infection remaining the primary. Emodin, an anthraquinone compound extracted from the natural plant’s. This study investigates the molecular targets and possible mechanisms of emodin in treating HBV-related HCC based on network pharmacology and molecular docking and validates the screened molecular targets through in vitro experiments.

Methods

Potential targets related to emodin were obtained through PubChem, CTD, PharmMapper, SuperPred, and TargetNet databases. Potential disease targets for HBV and HCC were identified using the DisGeNET, GeneCards, OMIM, and TTD databases. A Venn diagram was used to determine overlapping genes between the drug and the diseases. Enrichment analysis of these genes was performed using GO and KEGG via bioinformatics websites. The overlapping genes were imported into STRING to construct a protein-protein interaction network. Cytoscape 3.9.1 software was used for visualizing and analyzing the core targets. Molecular docking analysis of the drug and core targets was performed using Schrodinger. The regulatory effects of emodin on these core targets were validate through in vitro experiments.

Results

A total of 43 overlapping genes were identified. GO analysis recognized 926 entries, and KEGG analysis identified 135 entries. The main pathways involved in the KEGG analysis included cancer, human cytomegalovirus infection and prostate cancer. The binding energies of emodin with HSP90AA1, PTGS2, GSTP1, SOD2, MAPK3, and PCNA were all less than -5 kcal/mol. Compared to normal liver tissue, the mRNA levels of XRCC1, MAPK3, and PCNA were significantly elevated in liver cancer tissue. The expression levels of XRCC1, HIF1A, MAPK3, and PCNA genes were closely related to HCC progression. High expressions of HSP90AA1, TGFB1, HIF1A, MAPK3, and PCNA were all closely associated with poor prognosis in HCC. In vitro experiments demonstrated that emodin significantly downregulated the expression of HSP90AA1, MAPK3, XRCC1, PCNA, and SOD2, while significantly upregulating the expression of PTGS2 and GSTP1.

Conclusion

This study, based on network pharmacology and molecular docking validation, suggests that emodin may exert therapeutic effects on HBV-related HCC by downregulating the expression of XRCC1, MAPK3, PCNA, HSP90AA1, and SOD2, and upregulating the expression of PTGS2 and GSTP1.
Early detection of chemotherapy-induced cardiotoxicity in breast cancer patients: a comprehensive analysis using speckle tracking echocardiography
Authors: Guo Xuejia , Zhang Ning , Wang Na , Zhang Yanyan , Liu Ya , Pei Miaomiao , Liu Gaiqin , Jia Xinle
Published: September 2024

Introduction

Chemotherapy-induced cardiotoxicity poses a significant challenge in the treatment of breast cancer, potentially compromising both the efficacy of cancer therapy and cardiac health of patients. This study aimed to enhance the early detection of cardiotoxic effects by integrating advanced imaging modalities and biomarker analysis, thereby facilitating timely interventions to mitigate cardiac risk.

Methods

A prospective cohort design was employed, enrolling breast cancer patients scheduled for potentially cardiotoxic chemotherapy regimens. The study utilized a comprehensive diagnostic toolkit, including echocardiography with strain imaging, cardiac MRI, and serial measurements of cardiac biomarkers such as high-sensitivity troponins and natriuretic peptides.

Results

The analysis revealed that subtle changes in myocardial strain parameters and early biomarker elevations were predictive of subsequent declines in left ventricular function, preceding conventional echocardiographic evidence of cardiotoxicity. Logistic regression analysis highlighted the additive predictive value of integrating biomarker data with advanced imaging findings to identify patients with the highest risk of significant cardiotoxicity.

Discussion

The study concluded that an integrated diagnostic approach, combining detailed imaging assessments with sensitive biomarker analysis, offers a superior strategy for the early detection of chemotherapy-induced cardiotoxicity in breast cancer patients. This proactive diagnostic strategy empowers clinicians to tailor cancer therapy more precisely, balancing oncologic efficacy with cardiovascular safety and underscores the importance of a multidisciplinary approach in the management of patients undergoing potentially cardiotoxic chemotherapy.
A systematic review of student learning outcomes in CLIL in LOTE
Authors: Pittas Evdokia , Tompkins Leah
Published: September 2024

Introduction

This paper aims to provide a first systematic research overview of student learning outcomes in programs teaching school subjects through languages other than English (LOTE) which are not the mother tongue of the students, according to school- or researcher-administered assessments and stakeholder perspectives, following the PRISMA statement. For brevity, we shall refer to these types of programs as CLIL in LOTE, though we have also included programs which use other labels, such as bilingual education or immersion, due to their similarities with those labeled “content and language integrated learning” (CLIL).

Methods

The selected studies, published between November 1994 and December 2023, were identified through the search of SCOPUS and EBSCO. In determining which studies to include in the review, we employed the following selection criteria: (1) articles focusing on children and youth (ages 5–17 years), (2) articles focusing on CLIL programs in LOTE, (3) articles focusing on student achievement, (4) articles focusing on studies that have collected primary data, and (5) studies that used school−/researcher-administered assessments (objective) or self/ hetero-reported measures (subjective). The screening of titles, abstracts and keywords left a final sample of n = 29 scientific papers, which were then read exhaustively and assessed for methodological quality.

Results

Most studies (26 of 29) addressed academic and/or linguistic outcomes, with some studies additionally addressing social/cultural outcomes, behavioral/affective outcomes, and/or (meta) cognitive outcomes. Of the learning outcomes reported, 25 (53%) were positive, five (11%) were negative, four (9%) were neutral, eight (17%) were mixed and four (9%) identified factors influencing outcomes.

Discussion

Theoretically, the study contributes to establishing more general theories about the specific role of CLIL in LOTE in students’ learning. Empirically, the study outlines pathways for future research on CLIL in LOTE. In practice, the study presents challenges identified by stakeholders to suggest pathways forward in CLIL teaching/learning.

Systematic review registration

Open Science Framework (OSF): https://osf.io/mc9uj.
Dynamic estimates of survival of patients with poorly differentiated thyroid carcinoma: a population-based study
Authors: Liu Zhao , Xu Qianlan , Xia Heng , Wang Miaofeng
Published: September 2024

Background

The real-time prognostic data of patients with poorly differentiated thyroid carcinoma (PDTC) after surviving for several years was unclear. This study aimed to employ a novel method to dynamically estimate survival for PDTC patients.

Methods

A total of 913 patients diagnosed with PDTC between 2014 and 2015 from the Surveillance, Epidemiology, and End Results (SEER) database, was recruited in our study. Kaplan–Meier method was used to estimate the overall survival (OS). The conditional survival (CS) outcomes of PDTC were analyzed and CS rates were calculated using the formula CS(y/x) = OS(y+x)/OS(x), whereby CS(y/x) denotes the probability of a patient enduring an additional y years subsequent to surviving x years following the diagnosis of PDTC. The least absolute shrinkage and selection operator (LASSO) regression was employed to identify prognostic predicters and multivariate Cox regression was utilized to develop a CS-nomogram. Finally, the performance of this model was evaluated and validated.

Results

Kaplan–Meier survival analysis unveiled patient outcomes demonstrating an OS rate of 83%, 75%, and 60% respectively at the end of 3, 5, and 10 years. The novel CS analysis highlighted a progressive enhancement in survival over time, with the 10-year cumulative survival rate progressively augmenting from its initiation of 60% to 66%, 69%, 73%, 77%, 81%, 83%, 88%, 93%, and finally 97% (after surviving for 1-9 years, respectively) each year. And then 11 (11/15) predictors including age at diagnosis, sex, histology type, SEER stage, T stage, N stage, M stage, tumor size, coexistence with other malignancy, radiotherapy and marital status, were selected by LASSO analysis under the condition of lambda.min. Multivariate Cox regression analysis further highlighted the significant impact of all these predictors on the OS of PDTC and we successfully established and validated a novel CS-nomogram for real-time and dynamic survival prediction.

Conclusions

This was the first study to analyze the CS pattern and demonstrate a gradual improvement in CS over time in long-term PDTC survivors. We then successfully developed and validated a novel CS-nomogram for individualized, dynamic, and real-time survival forecasting, empowering clinicians to adapt and refine the patient-tailored treatment strategy promptly with consideration of evolving risks.
Associations of total protein, albumin, and globulin with insulin resistance: an NHANES study
Authors: Zeng Rui-Xiang , Xu Jun-Peng , Zhang Yu-Zhuo , Tan Jia-Wei , Kong Yong-Jie , Zhang Min-Zhou , Guo Li-Heng
Published: September 2024

Objective

Insulin resistance (IR) is a well-established major risk factor for type 2 diabetes mellitus, nonalcoholic fatty liver disease, and atherosclerotic cardiovascular disease. Previous studies have shown an association between increased serum albumin (ALB) levels and the risk of IR. However, there is a lack of studies simultaneously evaluating the association of total protein (TP), ALB, and globulin (GLB) with IR.

Methods

A total of 14,828 individuals (average age 49 ± 18 years) with complete data from the National Health and Nutrition Examination Survey (NHANES) were enrolled and divided into two groups (non-IR group, n = 8,653 and IR group, n = 6,175). Spearman’s correlation analysis, multivariable logistic regression models, restricted cubic spline curves, and subgroup analysis were performed to explore those associations.

Results

After adjustment for potential confounders, multivariable logistic regression analysis revealed that scaled per 10g/L increment, the fully adjusted odds ratios (ORs) (95% confidence interval (CI)) for IR prevalence were 1.54 (95% CI 1.41-1.69, P < 0.0001), 1.09 (95% CI 0.95-1.25), P = 0.1995), and 1.62 (95% CI 1.47-1.79, P < 0.0001) for TP, ALB, and GLB respectively. Compared to those in the lowest quantiles, the prevalence of IR in subjects in the highest TP and GLB quantiles was 2.06 and 1.91 times, respectively. Furthermore, restrictive cubic curves confirmed that the relationship of TP, ALB, and GLB with IR prevalence was a linear relationship.

Conclusions

The present cross-sectional study, for the first time, provided supportive evidence of positive associations of TP and GLB with IR, but not ALB, and demonstrated that TP and GLB might be useful markers for IR prevalence.
The serum uric acid-to-high-density lipoprotein cholesterol ratio is a predictor for all-cause and cardiovascular disease mortality: a cross-sectional study
Authors: Li Zhanbin , Liu Qiaoran , Yao Zhenyu
Published: September 2024

Objective

The exact relationship between the serum uric acid-to-HDL cholesterol ratio (UHR) and mortality rates remains enigmatic among American adults. This study aims to clarify the association between UHR and both all-cause and cardiovascular disease (CVD) mortality in US adults.

Methods

This study enrolled 48054 patients from the National Health and Nutrition Examination Survey (NHANES). Mortality outcomes were determined by linking to National Death Index (NDI) records up to December 31,2019. Multivariate Cox proportional hazards models were constructed to analyze explore the associations between UHR and mortality. Dose-response relationships were explored using restricted cubic splines, and stratified analyses were conducted based on gender, age, race, education, PIR, smoking status, alcohol intake, physical activity, BMI, diabetes and hypertension.

Results

During the follow-up period, the overall mortality for all-cause and CVD was 10.9% and 2.7%, respectively. The adjusted HRs in the highest quintile were 1.16 (95% CI: 1.05, 1.29) for all-cause mortality and 1.2 (95% CI: 1, 1.45) for CVD mortality. In diabetes, obese, and CVD subgroups, significantly elevated adjusted HRs were observed for both all-cause and CVD mortality. Specifically, diabetes patients had adjusted HRs of 1.32 (95% CI: 1.11, 1.57) and 1.38 (95% CI: 1.01, 1.90), obese individuals had HRs of 1.32 (95% CI: 1.10, 1.58) and 1.55 (95% CI: 1.06, 2.28), and CVD patients had HRs of 1.29 (95% CI: 1.10, 1.50) and 1.38 (95% CI: 1.06, 1.79), respectively. A non-linear relationship between UHR and mortality was identified, with critical thresholds of 12.4 for all-cause mortality and 10.7 for CVD mortality in the general population. Significant interactions were observed between UHR and stratified variables, including gender, BMI, education, smoking, alcohol use, and hypertension for all-cause mortality, while significant interactions were observed based on gender, smoking, and alcohol intake for CVD mortality. Comparable trends were also observed in patient with diabetes, obese and CVD.

Conclusions

In this cohort study, we provide novel insights into the association between serum UHR concentrations and mortality in the general population. UHR is a strong predictor of all-cause and cardiovascular mortality in the general population.
Wave energy assessment and wave converter applicability at the Pacific coast of Central America
Authors: Corrales-Gonzalez Manuel , Lavidas George , Lira-Loarca Andrea , Besio Giovanni
Published: September 2024

Nowadays, numerous governments have instituted diverse regulatory frameworks aimed at fostering the assimilation of sustainable energy sources characterized by reduced environmental footprints. Solar, wind, geothermal, and ocean energies were subject to extensive scrutiny, owing to their ecological merits. However, these sources exhibit pronounced temporal fluctuations. Notably, ocean dynamics offer vast energy reservoirs, with oceanic waves containing significant amounts of energy. In the Central American Pacific context, the exploration of wave energy resources is currently underway. Accurate numerical wave models are required for applied studies such as those focused on the estimation of exploitable wave power; and even more so in Central American region of the Pacific Ocean where existing numerical models simulations have so far relied on coarse resolution and limited validation field data. This work presents a high-resolution unstructured wave hindcast over the Central American Pacific region, implemented using the third-generation spectral wave model WAVEWATCH III over the period between 1979 and 2021. The results of the significant wave height have been bias-corrected on the basis of satellite information spanning 2005 to 2015, and further validation was performed using wave buoy and acoustic Doppler current profiler (ADCP) records located in the nearshore region of the Central America Pacific coast. After correction and validation of the wave hindcast, we employed the dataset for the evaluation and assessment of wave energy and its possible exploitation using different wave energy converters (WECs). This evaluation addressed the need to diverse the energy portfolio within the exclusive economic zones of Guatemala, El Salvador, Honduras, Nicaragua, Costa Rica, Panama, Colombia, and Ecuador in a sustainable manner. Moreover, a comprehensive analysis was carried out on the advantages of harnessing wave energy, juxtaposed with the imperative of regulatory frameworks and the current dearth of economic and environmental guidelines requisite for development within the region.
Monitoring technology of hydroturbines in pumped storage power stations: a mini review
Authors: Yang Zhangbin , Yuan Hongping , Cai Xi , Lian Xueguang , Mao Jiang , Shi Xiangjian
Published: September 2024

Regarding the monitoring and control technology of pumped storage power stations, the monitoring methods for the operating parameters of the turbines in pumped storage power stations were first analyzed, including the monitoring locations and methods for pressure and vibration, as well as the analysis of the reasons for special operating conditions; Secondly, the operation monitoring and fault diagnosis system of pumped storage power stations was summarized and introduced, including the commonly used monitoring systems, fault diagnosis principles, and application situations. Finally, the development trend of turbine monitoring technology and fault diagnosis was discussed.
Adapting the patch-cut system to implement forest assisted migration
Authors: Nolet Philippe , Béland Martin , Messier Christian
Published: September 2024

As the Anthropocene tightens its grip on the world, forests are facing escalating disturbance rates, tree mortality, degradation and risks of catastrophic collapses. A popular and controversial proposition is to enhance forests’ response diversity by adding novel tree species with missing functional traits through forest assisted migration (FAM). Beyond tests of the survival and growth of southern species or provenances in colder regions and studies of the socio-ecological challenges facing FAM, little interest has been paid to the silvicultural system for FAM implementation. Yet, the topic could influence its biological success, social acceptability, and economic feasibility. For example, southern light-intolerant tree species introduced into northern uneven-aged forests may experience a lack of light availability. Likewise, implementing FAM in clearcuts raises social acceptability issues. The patch-cut system combines advantages of even- and uneven-aged systems useful for FAM; however, perhaps due to the difficulty of its operationalization, it is rarely used. We propose a new way to implement the patch-cut system, enabling from the get-go to plan the location and timing of treatment of each patch in a stand. We discuss the advantages that this revisited patch-cut system presents for FAM: (i) the testing of various planting environments, (ii) easy monitoring in an adaptative management context where each patch is a replicate of a repeated-measure experiment and (iii) low intensity planting for efficient future dispersion of species adapted to a changing climate. We end with a call for the development of an international network of FAM trials within the revised patch-cut system.
Hydrogen-natural gas fuel blending in a “rich burn” engine with 3-way catalyst
Authors: Katsampes Nicholas , Montgomery David , Arney Gregg , Olsen Daniel B.
Published: September 2024

Interest in hydrogen (H2) fuels is growing, with industry planning to produce it with stranded or excess energy from renewable sources in the future. Natural gas (NG) utility companies are now taking action to blend H2 into their preexisting pipelines to reduce greenhouse gas (GHG) emissions from burning NG. Stoichiometric (“rich burn”) NG engines that operate on pipeline NG and will receive blended fuel as more gas utilities expand H2 production. These engines are typically chosen for their low emissions owing to the 3-way catalyst control, so the focus of this paper is on the change in emissions like carbon monoxide (CO) and nitrogen oxides (NOx) as the fuel is blended with up to 30% H2 by volume. The Caterpillar CG137-8 natural gas engine used for testing was originally designed for industrial gas compression applications and is a good representative for most “rich burn” engines used across industry for applications such as power generation, gas compression, and water pumping. A significant greenhouse gas (GHG) emissions reduction is observed as more H2 is added to the fuel. Increasing H2 in the fuel changes combustion behavior in the cylinder, resulting in faster ignition and higher cylinder pressures, which increase engine-out NOx emissions. Post-catalyst CO and NOx both decrease slightly with increasing H2 while operating at the optimal “air-fuel” equivalence ratio (λ). A “rich burn” engine with 3-way catalyst can tolerate up to 30% H2 (by vol.) while still meeting NOx and CO emissions limits. However, at elevated levels of H2, increased engine-out NOx emissions narrow the λ range of operation. As H2 is added to NG pipelines, some “rich burn” engine systems may require larger catalysts or more precise λ control to accommodate the increased NOx production associated with a H2-NG blend. Sudden step-increases in H2 cause dramatic changes in λ, resulting in large emissions of post-catalyst NOx during the transition. Comparable changes in H2 at elevated concentrations cause larger spikes in NOx than at lower concentrations. Better tuned engine controllers respond more quickly and produce less NOx during H2 step-transitions.
Fungi of Great Salt Lake, Utah, USA: a spatial survey
Authors: Parrott David L. , Baxter Bonnie K.
Published: September 2024

The natural system at Great Salt Lake, Utah, USA was augmented by the construction of a rock-filled railroad causeway in 1960, creating two lakes at one site. The north arm is sequestered from the mountain snowmelt inputs and thus became saturated with salts (250-340 g/L). The south arm is a flourishing ecosystem with moderate salinity (90-190 g/L) and a significant body of water for ten million birds on the avian flyways of the western US who engorge themselves on the large biomass of brine flies and shrimp. The sediments around the lake shores include calcium carbonate oolitic sand and clay, and further away from the saltwater margins, a zone with less saline soil. Here a small number of plants can thrive, including Salicornia and Sueda species. At the north arm at Rozel Point, halite crystals precipitate in the salt-saturated lake water, calcium sulfate precipitates to form gypsum crystals embedded in the clay, and high molecular weight asphalt seeps from the ground. It is an ecosystem with gradients and extremes, and fungi are up to the challenge. We have collected data on Great Salt Lake fungi from a variety of studies and present them here in a spatial survey. Combining knowledge of cultivation studies as well as environmental DNA work, we discuss the genera prevalent in and around this unique ecosystem. A wide diversity of taxa were found in multiple microniches of the lake, suggesting significant roles for these genera: Acremonium, Alternaria, Aspergillus, Cladosporium, Clydae, Coniochaeta, Cryptococcus, Malassezia, Nectria, Penicillium, Powellomyces, Rhizophlyctis, and Wallemia. Considering the species present and the features of Great Salt Lake as a terminal basin, we discuss of the possible roles of the fungi. These include not only nutrient cycling, toxin mediation, and predation for the ecosystem, but also roles that would enable other life to thrive in the water and on the shore. Many genera that we discovered may help other organisms in alleviating salinity stress, promoting growth, or affording protection from dehydration. The diverse taxa of Great Salt Lake fungi provide important benefits for the ecosystem.
Impact of dietary changes on retinal neuronal plasticity in rodent models of physical and psychological trauma
Authors: Patel Mital Y. , Yang Ruoting , Chakraborty Nabarun , Miller Stacy-Ann , DeMar James C. , Batuure Andrew , Wilder Donna , Long Joseph , Hammamieh Rasha , Gautam Aarti
Published: September 2024

Introduction

Blast injury has been implicated as the major cause of traumatic brain injury (TBI) and ocular system injury, in military operations in Iraq and Afghanistan. Soldiers exposed to traumatic stress also have undiagnosed, chronic vision problems. Here we hypothesize that excessive intake of ω-6 fatty acid linoleic acid (LA) and insufficiency of dietary long chain ω-3 polyunsaturated fatty acids (PUFAs, e.g., docosahexaenoic acid; DHA) would dysregulate endocannabinoid-mediated neuronal plasticity and immune response. The study objective was to determine the effect of blast-TBI and traumatic stress on retinal gene expression and assess the role of dietary deficiency of long chain ω-3 PUFAs on the vulnerability to these injury models.

Methods

Linoleic acid was used as an independent variable to reflect the dietary increase in LA from 1 percent of energy (en%) to 8 en% present in the current western diets, and these custom LA diets were also devoid of long chain ω-3 PUFAs. Animals were exposed to a simulated blast overpressure wave followed by a weight drop head-concussion to induce TBI. A Separate group of rats were subjected to traumatic stress by a forced immersion underwater.

Results

Our findings showed that blast-TBI exposure, post 14 days, produced significant neuropathological changes such as axonal degeneration in the brain optic tracts from all the three diet groups, especially in rats fed the DHA-deprived 1 en% LA diet. Transcriptomic analysis showed that presence of DHA in the house chow diet prevented blast-induced disruption of neuronal plasticity by activating molecular networks like SNARE signaling, endocannabinoid pathway, and synaptic long-term depression when compared to DHA-deprived 8 en% LA diet group. Under traumatic stress, retinal synaptic function, neurovascular coupling, and opioid signaling mechanisms were dysregulated in rodents fed DHA-deficient diets (i.e., 8 en% LA and 1 en% LA), where reducing the levels of ω-6 linoleic acid from 8 en% to 1 en% was associated with increased neuronal plasticity and suppressed immune signaling.

Conclusion

The findings of our study suggest that deprivation of long chain ω-3 PUFAs in the diet affects endocannabinoid-mediated neuronal plasticity, vascular function and inflammatory response that could influence the resistance of veterans to TBI and psychological trauma.
Causal relationship between reproductive factors and female bone density: a univariate and multivariate mendelian randomization study
Authors: Lin Xiaojing , Zuo Yaqi , Hu Hongbo , Zhou Jie
Published: September 2024

Objective

Observational studies have found associations between reproductive factors and bone density in women. However, the causal relationships are not well understood. This study aims to investigate whether various reproductive factors are causally related to bone density at different skeletal sites using both univariable and multivariable Mendelian randomization (MR) methods.

Methods

The study incorporated four reproductive factors, namely, age at menarche (AAM), age at first live birth (AFB), age at menopause (ANM), and age at last live birth (ALB), as well as five distinct skeletal sites, including bone mineral density (BMD), heel calcaneus BMD, ultradistal forearm bone mineral density (FA-BMD), lumbar spine bone mineral density (LS-BMD), and femoral neck bone mineral density (FN-BMD). Univariable two-sample MR and multivariable MR analyses were conducted using data from published genome-wide association studies (GWASs). A total of 150 single nucleotide polymorphisms (SNPs) associated with the four reproductive factors were extracted from GWAS databases. The primary statistical analysis method utilized in this study was the inverse variance weighted (IVW) method.

Results

In the univariate MR analysis, we observed causal connections between four reproductive factors and bone density. Specifically, AAM had a significant impact on BMD and heel calcaneus BMD. Age at first live birth was negatively associated with FA-BMD. Age at last live birth showed a negative correlation with BMD and heel calcaneus BMD. ANM exhibited positive associations with BMD, heel calcaneus BMD, FA-BMD, and LS-BMD. Subsequently, we performed a multivariable MR analysis to examine the combined effects of multiple variables, which confirmed the persistence of associations between age at menopause and bone density at various sites. Additionally, we found a negative correlation between age at last live birth and heel calcaneus BMD.

Conclusion

This study offers a fresh perspective on the prevention of osteoporosis in women, explicitly stating that reproductive factors such as early menopause and late childbirth play a significant predictive role in individual bone density decline. Therefore, when developing osteoporosis screening and management protocols, reproductive factors should be included for a more comprehensive guidance of clinical practice.
Role of telomere dysfunction and immune infiltration in idiopathic pulmonary fibrosis: new insights from bioinformatics analysis
Authors: Fu Chenkun , Tian Xin , Wu Shuang , Chu Xiaojuan , Cheng Yiju , Wu Xiao , Yang Wengting
Published: September 2024

Background

Idiopathic pulmonary fibrosis (IPF) is a chronic progressive interstitial lung disease characterized by unexplained irreversible pulmonary fibrosis. Although the etiology of IPF is unclear, studies have shown that it is related to telomere length shortening. However, the prognostic value of telomere-related genes in IPF has not been investigated.

Methods

We utilized the GSE10667 and GSE110147 datasets as the training set, employing differential expression analysis and weighted gene co-expression network analysis (WGCNA) to screen for disease candidate genes. Then, we used consensus clustering analysis to identify different telomere patterns. Next, we used summary data-based mendelian randomization (SMR) analysis to screen core genes. We further evaluated the relationship between core genes and overall survival and lung function in IPF patients. Finally, we performed immune infiltration analysis to reveal the changes in the immune microenvironment of IPF.

Results

Through differential expression analysis and WGCNA, we identified 35 significant telomere regulatory factors. Consensus clustering analysis revealed two distinct telomere patterns, consisting of cluster A (n = 26) and cluster B (n = 19). Immune infiltration analysis revealed that cluster B had a more active immune microenvironment, suggesting its potential association with IPF. Using GTEx eQTL data, our SMR analysis identified two genes with potential causal associations with IPF, including GPA33 (PSMR = 0.0013; PHEIDI = 0.0741) and MICA (PSMR = 0.0112; PHEIDI = 0.9712). We further revealed that the expression of core genes is associated with survival time and lung function in IPF patients. Finally, immune infiltration analysis revealed that NK cells were downregulated and plasma cells and memory B cells were upregulated in IPF. Further correlation analysis showed that GPA33 expression was positively correlated with NK cells and negatively correlated with plasma cells and memory B cells.

Conclusion

Our study provides a new perspective for the role of telomere dysfunction and immune infiltration in IPF and identifies potential therapeutic targets. Further research may reveal how core genes affect cell function and disease progression, providing new insights into the complex mechanisms of IPF.
Low prevalence of HIV in the northern Cameroon: contribution of some AIDS restriction genes and potential implications for gene therapy
Authors: Djataou Patrice , Djuidje Ngounoue Marceline , Nkenfou-Tchinda Carine Nguefeu , Ngoufack Marie Nicole , Elong Elise , Tiga Aline , Muluh Clifford , Kadji Kameni Joelle , Djaouda Moussa , Ndjolo Alexis , Nkenfou Celine Nguefeu
Published: September 2024

Background

HIV infection and its progression to AIDS depend on several factors including host genetic factors. The immunological mechanisms of host resistance to HIV infection greatly influence the prevalence of HIV in a given region. Worldwide, Cameroon not exempted, the frequency of AIDS-associated genes varies and may influence this prevalence. The North and Far North Regions of Cameroon have had the lowest HIV prevalence in the country for many years despite risky behaviors associated with their customs and habits. In this work, we seek to explore the contribution of host genes to the HIV low prevalence in these regions.

Methodology

Five genes variants previously described as HIV AIDS related were studied. These genes are: CCR5Δ32, CCR5promoter59029G, CCR2-64I, SDF1-3ʹA and Trim5α(R136Q). A total of 384 consented participants were included in this study. The HIV serological status was confirmed using national algorithm. Genomic DNA was extracted from the buffy coats and used for genotyping. The results obtained were compiled in Excel 2016, Epi Info 7.1 and snpStats software and Chi two tests allowed us to compare the frequencies of the AIDS related alleles in the North with those in other Regions of Cameroon and to measure the impact of these ARGs on protection against HIV.

Results

The frequency of protective alleles CCR5Δ32, CCR5promoter59029G, CCR2-64I, SDF1-3ʹA and Trim5α(R136Q) was the allelic frequencies should be expressed as percentages i.e. 0.52%; 37.56%; 36.46%; 25.19% and 69.33%. These allelic frequencies exhibited a significant difference when compared to those obtained in other regions of Cameroon (p < 0.01). Protective alleles were predominant in the Northern region compared to others and were associated with resistance to HIV [(p < 0.0001); OR = 2.02 CI, 95%].

Conclusion

The higher frequency of HIV-protective alleles in the northern regions may be a contributing factor to the lower prevalence of HIV. Nevertheless, this should be reinforced by other preventive and surveillance methods to guarantee the sustained low prevalence. HIV can develop resistance through the process of mutation, but the host targets themselves are genetically stable. The study of these host genetic restriction factors is of great value in the design of a practical cure for HIV infection or an effective vaccine.
Neutrophils: a key component in ECMO-related acute organ injury
Authors: Zhang Mingfu , Li Shiping , Ying Junjie , Qu Yi
Published: September 2024

Extracorporeal membrane oxygenation (ECMO), as an extracorporeal life support technique, can save the lives of reversible critically ill patients when conventional treatments fail. However, ECMO-related acute organ injury is a common complication that increases the risk of death in critically ill patients, including acute kidney injury, acute brain injury, acute lung injury, and so on. In ECMO supported patients, an increasing number of studies have shown that activation of the inflammatory response plays an important role in the development of acute organ injury. Cross-cascade activation of the complement system, the contact system, and the coagulation system, as well as the mechanical forces of the circuitry are very important pathophysiological mechanisms, likely leading to neutrophil activation and the production of neutrophil extracellular traps (NETs). NETs may have the potential to cause organ damage, generating interest in their study as potential therapeutic targets for ECMO-related acute organ injury. Therefore, this article comprehensively summarized the mechanism of neutrophils activation and NETs formation following ECMO treatment and their actions on acute organ injury.
The role of cytokines from salivary gland epithelial cells in the immunopathology of Sjögren’s syndrome
Authors: Dong Yuanji , Wang Ting , Wu Huaxiang
Published: September 2024

In the pathogenesis and progression of Sjögren’s syndrome (SS), hematopoietic cells in the peripheral circulation, tissue-resident immune cells, and parenchymal cells of salivary gland tissues (such as epithelial cells, endothelial cells, fibroblasts, etc.) all play crucial roles. These diverse cells form intricate networks and interact with each other, leading to tissue destruction and persistent chronic inflammation, ultimately causing irreversible damage in glandular function. Among these, salivary gland epithelial cells (SGECs) consistently hold a key position, characterized by their functions in expressing co-stimulatory and antigen-presenting molecules and secreting pro-inflammatory cytokines and chemokines. Moreover, SGECs actively engage in and facilitate the development of specific pathological structures within the salivary gland, such as lymphoepithelial lesions (LELs) and tertiary lymphoid structures (TLSs), thereby substantially elevating the risk of mucosa-associated lymphoid tissue (MALT) lymphoma. Overall, SGECs are recognized for their essential and irreplaceable contributions to the pathogenesis of SS. This review article initially delves into the anatomical composition of salivary gland epithelial cells, subsequently focusing on elucidating the different cytokines derived from SGECs, encompassing chemokines, pro-inflammatory cytokines, anti-inflammatory cytokines, pro-survival cytokines, and damage-associated molecular patterns (DAMPs), to explore their key roles in the pathogenesis of SS.
Molecular mechanisms of avian immunoglobulin gene diversification and prospect for industrial applications
Authors: Seo Hidetaka , Hirota Kouji , Ohta Kunihiro
Published: September 2024

Poultry immunoglobulin genes undergo diversification through homologous recombination (HR) and somatic hypermutation (SHM). Most animals share a similar system in immunoglobulin diversification, with the rare exception that human and murine immunoglobulin genes diversify through V(D)J recombination. Poultry possesses only one functional variable gene for each immunoglobulin heavy (HC) and light chains (LC), with clusters of non-productive pseudogenes upstream. During the B cell development, the functional variable gene is overwritten by sequences from the pseudo-variable genes via a process known as gene conversion (GC), a kind of HR. Point mutations caused in the functional variable gene also contribute to immunoglobulin diversification. This review discusses the latest findings on the molecular mechanisms of antibody gene diversification in poultry, using chickens as a model. Additionally, it will outline how these basic research findings have recently been applied especially in the medical field.
Shading responses are species-specific in thermally stressed corals
Authors: Ellis Sophia L. , Butcherine Peter , Tagliafico Alejandro , Hendrickson Conor , Kelaher Brendan P. , Schulz Kai G. , Harrison Daniel P.
Published: September 2024

Light is critical to coral growth through endosymbiont photosynthesis but can also act with elevated temperatures to cause coral bleaching. When more light is absorbed than can be used for photosynthesis, elevated irradiance can damage symbiont photosynthetic machinery. Hence, solar-radiation management through shading has been suggested to alleviate coral bleaching during marine heatwaves. Acropora divaricata and Acropora kenti were tested at two temperatures with 30% shading and an unshaded control to determine the relative impacts of light and temperature on coral bleaching severity. The coral bleaching response was assessed by photochemical (pulse amplitude modulated fluorometry), physiological (symbiont density, chlorophyll a concentration, catalase activity, and lipid peroxidation), and physical (mean intensity of grey or ‘percentage whiteness’) markers. Shading significantly reduced the bleaching response in A. divaricata, whilst for some parameters A. kenti responded negatively to shade. In A. divaricata, shading prevented photochemical collapse up to the experiment’s maximum 4.4 degree-heating weeks (DHW). Biomarkers of coral bleaching stress responded to shade and water temperature at 4.4 DHW; catalase activity was greatest in the shaded and ambient temperature treatment. Shading did not reduce the effects of bleaching in A. kenti; the mean intensity of grey and light saturation coefficient was greatest in the shaded treatment. Shading did, however, reduce lipid peroxidation at 3 DHW. Our results suggest shading during thermal stress may only protect some coral species, highlighting the need to consider species-specific responses when evaluating the potential efficacy of coral bleaching interventions.