bluuebunny/crossref_metadata_2025 huggingface dataset:
Enhancing COVID-19 Classification Accuracy with a Hybrid SVM-LR Model
Authors: Nordin Noor Ilanie , Mustafa Wan Azani , Lola Muhamad Safiih , Madi Elissa Nadia , Kamil Anton Abdulbasah , Nasution Marah Doly , K. Abdul Hamid Abdul Aziz , Zainuddin Nurul Hila , Aruchunan Elayaraja , Abdullah Mohd Tajuddin
Published: November 2023

Support ector achine (SVM) is a newer machine learning algorithm for classification, while logistic regression (LR) is an older statistical classification method. Despite the numerous studies contrasting SVM and LR, new improvements such as bagging and ensemble have been applied to them since these comparisons were made. This study proposes a new hybrid model based on SVM and LR for predicting small events per variable (EPV). The performance of the hybrid, SVM, and LR models with different EPV values was evaluated using COVID-19 data from December 2019 to May 2020 provided by the WHO. The study found that the hybrid model had better classification performance than SVM and LR in terms of accuracy, mean squared error (MSE), and root mean squared error (RMSE) for different EPV values. This hybrid model is particularly important for medical authorities and practitioners working in the face of future pandemics.
Risk Factors for CMV and BK Infections in an Elderly Veteran Population Following Kidney Transplantation: Implications for Immunosuppression Induction and Management
Authors: Thorndyke Anne , Joyce Cara , Samra Manpreet , Cotiguala Laura , Trotter Christine , Aguirre Oswaldo , Chon W. James , Sodhi Rupinder , Lopez-Soler Reynold I.
Published: November 2023

Cytomegalovirus (CMV) and BK Polyomavirus (BKPyV) are the most common opportunistic pathogens following kidney transplantation. We evaluated 102 patients with a median age of 63 at Edward Hines VA Hospital from November 2020 to December 2022. Our primary interest was the incidence of CMV and BKPyV infections, as well as CMV and BKPyV coinfection. Secondary interests included time to infection, rejection, and graft and patient survival. There were no statistically significant differences in patient age, donor age, race, transplant type, incidence of delayed graft function, or induction in both cohorts (any infection (N = 46) vs. those without (N = 56)). There was a 36% (37/102) incidence of CMV, a 17.6% (18/102) of BKPyV and an 8.8% (9/102) incidence of coinfection. There was a decreased incidence of CMV infection in Basiliximab induction versus antithymocyte globulin (21% and 43%). CMV risk status had no effect on the incidence of CMV infection following transplant. African American recipients had a lower incidence of BKPyV infection (12% vs. 39%), yet a higher incidence was observed in those with high cPRA (50% vs. 14%). Most CMV and/or BKPyV infections occurred within the first six months post-transplant (54%). Immunosuppression management of the elderly should continually be evaluated to reduce opportunistic infections post-transplant.
Assessing the Layer-by-Layer Assembly of Cellulose Nanofibrils and Polyelectrolytes in Pancreatic Tumor Spheroid Formation
Authors: Abbasi Aval Negar , Lahchaichi Ekeram , Tudoran Oana , Fayazbakhsh Farzaneh , Heuchel Rainer , Löhr Matthias , Pettersson Torbjörn , Russom Aman
Published: November 2023

Three-dimensional (3D) tumor spheroids are regarded as promising models for utilization as preclinical assessments of chemo-sensitivity. However, the creation of these tumor spheroids presents challenges, given that not all tumor cell lines are able to form consistent and regular spheroids. In this context, we have developed a novel layer-by-layer coating of cellulose nanofibril–polyelectrolyte bilayers for the generation of spheroids. This technique builds bilayers of cellulose nanofibrils and polyelectrolytes and is used here to coat two distinct 96-well plate types: nontreated/non-sterilized and Nunclon Delta. In this work, we optimized the protocol aimed at generating and characterizing spheroids on difficult-to-grow pancreatic tumor cell lines. Here, diverse parameters were explored, encompassing the bilayer count (five and ten) and multiple cell-seeding concentrations (10, 100, 200, 500, and 1000 cells per well), using four pancreatic tumor cell lines—KPCT, PANC-1, MiaPaCa-2, and CFPAC-I. The evaluation includes the quantification (number of spheroids, size, and morphology) and proliferation of the produced spheroids, as well as an assessment of their viability. Notably, our findings reveal a significant influence from both the number of bilayers and the plate type used on the successful formation of spheroids. The novel and simple layer-by-layer-based coating method has the potential to offer the large-scale production of spheroids across a spectrum of tumor cell lines.
A Dual-Layer Weight-Leader-Vicsek Model for Multi-AGV Path Planning in Warehouse
Authors: Lin Shiwei , Liu Ang , Wang Jianguo
Published: November 2023

Multiple automatic guided vehicles are widely involved in industrial intelligence. Path planning is crucial for their successful application. However, achieving robust and efficient path planning of multiple automatic guided vehicles for real-time implementation is challenging. In this paper, we propose a two-layer strategy for multi-vehicle path planning. The approach aims to provide fast computation and operation efficiency for implementation. The start–destination matrix groups all the vehicles, generating a dynamic virtual leader for each group. In the first layer, the hybrid A* algorithm is employed for the path planning of the virtual leaders. The second layer is named leader–follower; the proposed Weight-Leader-Vicsek model is applied to navigate the vehicles following their virtual leaders. The proposed method can reduce computational load and achieve real-time navigation by quickly updating the grouped vehicles’ status. Collision and deadlock avoidance is also conducted in this model. Vehicles in different groups are treated as dynamic obstacles. We validated the method by conducted simulations through MATLAB to verify its path-planning functionality and experimented with a localization sensor.
Gonad and Germ Cell Development and Maturation Characteristics of the Pot-Bellied Seahorse (Hippocampus abdominalis) under Captive Breeding Conditions in Northern China
Authors: Zhang Yichao , Qin Siyong , Liu Qinghua , Wang Wenqi
Published: November 2023

Ovoviviparity and male pregnancy represent distinctive reproductive strategies in seahorses. However, the detailed process of gonadal development in seahorses, particularly in the pot-bellied seahorse (Hippocampus abdominalis), remains largely unknown. In this study, we investigated the complete gonadal development process of the pot-bellied seahorse under captive breeding conditions (18 ± 1 °C). Immediately after birth, primordial germ cells (PGCs) were found within the genital ridge, enclosed by a single layer of somatic cells. Around 7–9 days after birth (DAB), the ovary begins to differentiate. By 30 DAB, two germinal ridges had formed along the edge of the follicular lamina in the ovary. The primary oocytes, resulting from this differentiation process, gradually migrated from the dorsal sides to the mid-ventral area of the ovary, eventually maturing into eggs. In the testis, the primary and secondary spermatocytes appeared at 15 and 30 DAB, respectively, preceding the formation of the testicular lumen (50 DAB). The testis was observed to consist of a single large germinal compartment. Under captive breeding conditions in Northern China, the pot-bellied seahorse demonstrated year-round breeding capability, with each male producing approximately 100–150 larvae. The findings from this study contribute valuable insights into seahorse aquaculture and enhance understanding of the unique reproductive strategy employed by seahorses.
Plant-Based Fermented Beverages: Development and Characterization
Authors: Deziderio Marcela Aparecida , de Souza Handray Fernandes , Kamimura Eliana Setsuko , Petrus Rodrigo Rodrigues
Published: November 2023

The production of plant-based fermented beverages has been currently focused on providing a functional alternative to vegan and/or vegetarian consumers. This study primarily targeted the development and characterization of fermented beverages made up of hydrosoluble extracts of oats, almonds, soybeans, Brazil nuts, and rice. The fermentation was carried out by lactic cultures of Bifidobacterium BB-12, Lactobacillus acidophilus LA-5, and Streptococcus thermophilus. Plant extracts were fermented at 37 °C for 12 h, with and without sucrose supplementation. The physicochemical and microbiological stability of the extracts was monitored for 28 days at 5 ± 1 °C. The composition of the fermented beverages was subsequently determined. The pH values measured at the beginning and the end of the extracts’ fermentation ranged between 6.45 and 7.09, and 4.10 to 4.97, respectively. Acidity indices, expressed as a percentage of lactic acid, ranged from 0.01 to 0.06 g/100 mL at the beginning of the fermentation, and from 0.02 to 0.33 g/100 mL upon fermentation being concluded. Most fermented extracts achieved viable lactic acid bacteria counts exceeding 106 CFU/mL during storage. Sucrose supplementation did not alter the rate of bacterial growth. The findings showed that the complete replacement of dairy ingredients with water-soluble plant extracts is a potential alternative for developing a functional fermented plant-based beverage.
Exploring the Role of Active Functional Microbiota in Flavor Generation by Integrated Metatranscriptomics and Metabolomics during Niulanshan Baijiu Fermentation
Authors: Pan Yuanyuan , Wang Ying , Hao Wenjun , Zhou Sen , Duan Chengbao , Li Qiushi , Wei Jinwang , Liu Gang
Published: November 2023

Active functional microbiota for producing volatile flavors is critical to Chinese baijiu fermentation. Microbial communities correlated with the volatile metabolites are generally explored using DNA-based sequencing and metabolic analysis. However, the active functional microbiota related to the volatile flavor compounds is poorly understood. In this study, an integrated metatranscriptomic and metabolomics analysis was employed to unravel the metabolite profiles comprehensively and the contributing active functional microbiota for flavor generation during Niulanshan baijiu fermentation. A total of 395, 83, and 181 compounds were annotated using untargeted metabolomics, including LC-MS, GC-MS, and HS-SPME-GC-MS, respectively. Significant variances were displayed in the composition of compounds among different time-point samples according to the heatmaps and orthogonal partial least-square discriminant analysis. The correlation between the active microbiota and the volatile flavors was analyzed based on the bidirectional orthogonal partial least squares discriminant analysis (O2PLS-DA) model. Six bacterial genera, including Streptococcus, Lactobacillus, Pediococcus, Campylobacter, Yersinia, and Weissella, and five fungal genera of Talaromyces, Aspergillus, Mixia, Rhizophagus, and Gloeophyllum were identified as the active functional microbiota for producing the volatile flavors. In summary, this study revealed the active functional microbial basis of unique flavor formation and provided novel insights into the optimization of Niulanshan baijiu fermentation.
An Overview of the Management of Functional Gastrointestinal Disorders in Infancy
Authors: Rishanghan Laura , Hinds Rupert
Published: November 2023

This review article will address the frequently encountered functional gastrointestinal disorders (FGIDs) occurring in infancy. The clinical features and management of infant regurgitation, infant colic, infant dyschezia, and functional constipation are discussed with reference to the most recent literature and evidence. Management should be focused on ruling out organic causes with careful history and examination, and then reassurance for the caregiver in this often very stressful period of parenting. There is often no or minimal pharmacological treatment necessary for FGIDs and treatment should be individualised for each patient and family.
Effects of Zeolite and Deficit Irrigation on Sweet Pepper Growth
Authors: Castronuovo Donato , Satriani Antonio , Rivelli Anna Rita , Comegna Alessandro , Belviso Claudia , Coppola Antonio , Di Prima Simone , Cavalcante Francesco , Lovelli Stella
Published: November 2023

The use of zeolites in agriculture as a soil conditioner is becoming an important field of research in crop growth. To study the effect of synthetic zeolites and deficit irrigation on sweet pepper (Capsicum annuum L.) cultivation, an experiment was conducted in a controlled environment. In particular, sweet peppers were cultivated in a glasshouse using polypropylene pots filled with sandy loam soil, to which 2% zeolite was added. The zeolite employed in the experiments was obtained using coal fly ash as a raw material. The experiment consisted of two main treatments: (a) soil with a zeolite at 2% (Z) and (b) soil without a zeolite as a control (C). Three subplot treatments consisted of (1) full irrigation at 100% of the available water content (AWC) (100); (2) deficit irrigation at 70% of the AWC (70); and (3) deficit irrigation at 50% of the AWC (50). Sweet pepper cultivation started on 24 April 2023 and lasted until 23 June 2023; during the trial, the environmental data, such as the soil humidity, air temperature, and relative humidity, and some crop parameters, such as the plant height, leaf number, and the SPAD index, were monitored. At the end of the trial, the fresh and dry plant weights, the dry matter content, and the leaf water potential were measured. The results showed that, for the plant fresh weight and dry matter content, no significant differences were observed in the treatments and their interactions, whereas, for the other parameters, the statistical analysis showed significant differences. The study suggests that the soil’s structural benefits, resulting from zeolite application, are not followed by an equal positive effect in terms of sweet pepper growth under deficit irrigation conditions.
Influence of Selenium, Titanium, and Silicon Nanoparticles on the Growth, Yield, and Fruit Quality of Mango under Drought Conditions
Authors: Almutairi Khalid F. , Górnik Krzysztof , Awad Rehab M. , Ayoub Ahmed , Abada Hesham S. , Mosa Walid F. A.
Published: November 2023

Weather fluctuations significantly affect the growth and production of orchard crops such as mango, leading to a substantial decrease in tree growth, flowering rate, yield, and fruit quality. One of these weather factors is drought, which negatively influences multiple physiological processes in plants. It increases the transpiration rate and decreases the cell turgidity, stomatal regulation, osmoregulation, water utilization efficiency, and the development of the deep root system; consequently, it decreases the final production and fruit quality. Therefore, the present study was performed in the 2022–2023 seasons to study the role of the spraying of Selenium (Se), Titanium (Ti), and Silicon (Si) nanoparticles on the growth parameters, yielding, fruit physical and chemical characteristics, and leaf mineral composition of mango cv. Keitt. Mango trees were sprayed during the vegetative season 2022–2023 three times, starting in April with three weeks intervals, by 5, 10, and 20 mg/L Se; 40, 60, and 80 mg/L Ti; and 50, 100, and 150 mg/L Si. The results showed that the extern spray of nanoparticles from these micronutrients improved the growth attributes, yielding and fruit quality of mango trees by reducing the effect of undesirable stressful conditions. The results also indicated that the extern implementation of 150 mg/L Si, 60 mg/L Ti and 20 mg/L Se gave the best increments in the shoot number, length, thickness, leaf area, and leaf chlorophyll contrasted to the else sprayed treatments. Besides, they also improved the fruit set percentages, fruit yields, fruit physical and chemical characteristics and nutritional status of mango trees in both tested seasons.
An Open-Source Cross-Section Tool for Hydrodynamic Model Geometric Input Development
Authors: Tom Bradley , He Minxue , Sandhu Prabhjot
Published: November 2023

Hydrodynamic models are widely used in simulating water dynamics in riverine and estuarine systems. A reasonably realistic representation of the geometry (e.g., channel length, junctions, cross-sections, etc.) of the study area is imperative for any successful hydrodynamic modeling application. Typically, hydrodynamic models do not digest these data directly but rely on pre-processing tools to convert the data to a readable format. This study presents a parsimonious open-source and user-friendly Java software tool, the Cross-Section Development Program (CSDP), that is developed by the authors to prepare geometric inputs for hydrodynamic models. The CSDP allows the user to select bathymetry data collected in different years by different agencies and create cross-sections and computational points in a channel automatically. This study further illustrates the application of this tool to the Delta Simulation Model II, which is the operational forecasting and planning hydrodynamic and water quality model developed for the Sacramento–San Joaquin Delta in California, United States. Model simulations on water levels and flow rates at key stations are evaluated against corresponding observations. The simulations mimic the patterns of the corresponding observations very well. The square of the correlation coefficient is generally over 0.95 during the calibration period and over 0.80 during the validation period. The absolute bias is generally less than 5% and 10% during the calibration and validation periods, respectively. The Kling–Gupta efficiency index is generally over 0.70 during both calibration and validation periods. The results illustrate that CSDP can be efficiently applied to generate geometric inputs for hydrodynamic models.
The Neurotransmission Basis of Post-Traumatic Stress Disorders by the Fear Conditioning Paradigm
Authors: Traina Giovanna , Tuszynski Jack A.
Published: November 2023

Fear conditioning constitutes the best and most reproducible paradigm to study the neurobiological mechanisms underlying emotions. On the other hand, studies on the synaptic plasticity phenomena underlying fear conditioning present neural circuits enforcing this learning pattern related to post-traumatic stress disorder (PTSD). Notably, in both humans and the rodent model, fear conditioning and context rely on dependent neurocircuitry in the amygdala and prefrontal cortex, cingulate gyrus, and hippocampus. In this review, an overview of the role that classical neurotransmitters play in the contextual conditioning model of fear, and therefore in PTSD, was reported.
Evaluation of Reference Genes for Normalizing RT-qPCR and Analysis of the Expression Patterns of WRKY1 Transcription Factor and Rhynchophylline Biosynthesis-Related Genes in Uncaria rhynchophylla
Authors: Mu Detian , Shao Yingying , He Jialong , Zhu Lina , Qiu Deyou , Wilson Iain W. , Zhang Yao , Pan Limei , Zhou Yu , Lu Ying , Tang Qi
Published: November 2023

Uncaria rhynchophylla (Miq.) Miq. ex Havil, a traditional medicinal herb, is enriched with several pharmacologically active terpenoid indole alkaloids (TIAs). At present, no method has been reported that can comprehensively select and evaluate the appropriate reference genes for gene expression analysis, especially the transcription factors and key enzyme genes involved in the biosynthesis pathway of TIAs in U. rhynchophylla. Reverse transcription quantitative PCR (RT-qPCR) is currently the most common method for detecting gene expression levels due to its high sensitivity, specificity, reproducibility, and ease of use. However, this methodology is dependent on selecting an optimal reference gene to accurately normalize the RT-qPCR results. Ten candidate reference genes, which are homologues of genes used in other plant species and are common reference genes, were used to evaluate the expression stability under three stress-related experimental treatments (methyl jasmonate, ethylene, and low temperature) using multiple stability analysis methodologies. The results showed that, among the candidate reference genes, S-adenosylmethionine decarboxylase (SAM) exhibited a higher expression stability under the experimental conditions tested. Using SAM as a reference gene, the expression profiles of 14 genes for key TIA enzymes and a WRKY1 transcription factor were examined under three experimental stress treatments that affect the accumulation of TIAs in U. rhynchophylla. The expression pattern of WRKY1 was similar to that of tryptophan decarboxylase (TDC) under ETH treatment. This research is the first to report the stability of reference genes in U. rhynchophylla and provides an important foundation for future gene expression analyses in U. rhynchophylla. The RT-qPCR results indicate that the expression of WRKY1 is similar to that of TDC under ETH treatment. It may coordinate the expression of TDC, providing a possible method to enhance alkaloid production in the future through synthetic biology.
Molecular Regulatory Mechanism of Exogenous Hydrogen Sulfide in Alleviating Low-Temperature Stress in Pepper Seedlings
Authors: Song Xueping , Zhu Li , Wang Dong , Liang Le , Xiao Jiachang , Tang Wen , Xie Minghui , Zhao Zhao , Lai Yunsong , Sun Bo , Tang Yi , Li Huanxiu
Published: November 2023

Pepper (Capsicum annuum L.) is sensitive to low temperatures, with low-temperature stress affecting its plant growth, yield, and quality. In this study, we analyzed the effects of exogenous hydrogen sulfide (H2S) on pepper seedlings subjected to low-temperature stress. Exogenous H2S increased the content of endogenous H2S and its synthetase activity, enhanced the antioxidant capacity of membrane lipids, and protected the integrity of the membrane system. Exogenous H2S also promoted the Calvin cycle to protect the integrity of photosynthetic organs; enhanced the photosynthetic rate (Pn), stomatal conductance (Gs), transpiration rate (Tr), and photosynthesis; and reduced the intercellular CO2 concentration (Ci). Moreover, the activities of superoxide dismutase, peroxidase, catalase, and anti-cyclic glutathione (ASA-GSH) oxidase were improved to decompose excess reactive oxygen species (ROS), enhance the oxidative stress and detoxification ability of pepper seedlings, and improve the resistance to low-temperature chilling injury in ‘Long Yun2’ pepper seedlings. In addition, the H2S scavenger hypotaurine (HT) aggravated the ROS imbalance by reducing the endogenous H2S content, partially eliminating the beneficial effects of H2S on the oxidative stress and antioxidant defense system, indicating that H2S can effectively alleviate the damage of low temperature on pepper seedlings. The results of transcriptome analysis showed that H2S could induce the MAPK-signaling pathway and plant hormone signal transduction; upregulate the expression of transcription factors WRKY22 and PTI6; induce defense genes; and activate the ethylene and gibberellin synthesis receptors ERF1, GDI2, and DELLA, enhancing the resistance to low-temperature chilling injury of pepper seedlings. The plant–pathogen interaction was also significantly enriched, suggesting that exogenous H2S also promotes the expression of genes related to plant–pathogen interaction. The results of this study provide novel insights into the molecular mechanisms and genetic modifications of H2S that mitigate the hypothermic response.
Genome-Wide Differential Transcription of Long Noncoding RNAs in Psoriatic Skin
Authors: Stacey Valerie M. , Kõks Sulev
Published: November 2023

Long noncoding RNAs (lncRNAs) may contribute to the formation of psoriatic lesions. The present study’s objective was to identify long lncRNA genes that are differentially expressed in patient samples of psoriasis through computational analysis techniques. By using previously published RNA sequencing data from psoriatic and healthy patients (n = 324), we analysed the differential expression of lncRNAs to determine transcripts of heightened expression. We computationally screened lncRNA transcripts as annotated by GENCODE across the human genome and compared transcription in psoriatic and healthy samples from two separate studies. We observed 54 differentially expressed genes as seen in two independent datasets collected from psoriasis and healthy patients. We also identified the differential expression of LINC01215 and LINC1206 associated with the cell cycle pathway and psoriasis pathogenesis. SH3PXD2A-AS1 was identified as a participant in the STAT3/SH3PXD2A-AS1/miR-125b/STAT3 positive feedback loop. Both the SH3PXD2A-AS1 and CERNA2 genes have already been recognised as part of the IFN-γ signalling pathway regulation. Additionally, EPHA1-AS1, CYP4Z2P and SNHG12 gene upregulation have all been previously linked to inflammatory skin diseases. Differential expression of various lncRNAs affects the pathogenesis of psoriasis. Further characterisation of lncRNAs and their functions are important for developing our understanding of psoriasis.
Poncirus trifoliata (L.) Raf. Seed Extract Induces Cell Cycle Arrest and Apoptosis in the Androgen Receptor Positive LNCaP Prostate Cancer Cells
Authors: Giordano Francesca , Comità Stefano , Venneri Giulia , Rago Vittoria , Naimo Giuseppina Daniela , De Amicis Francesca , De Bartolo Anna , Tundis Rosa , Mauro Loredana , Panno Maria Luisa
Published: November 2023

Prostate cancer (PCa) is the second most common male cancer. Its incidence derives from the interaction between modifiable and non-modifiable factors. The progression of prostate cancer into a more aggressive phenotype is associated with chronic inflammation and increased ROS production. For their biological properties, some phytochemicals from fruits and vegetable emerge as a promise strategy for cancer progression delay. These bioactive compounds are found in the highest amounts in peels and seeds. Poncirus trifoliata (L.) Raf. (PT) has been widely used in traditional medicine and retains anti-inflammatory, anti-bacterial, and anticancer effects. The seeds of P. trifoliata were exhaustively extracted by maceration with methanol as the solvent. The cell proliferation rate was performed by MTT and flow cytometry, while the apoptosis signals were analyzed by Western blotting and TUNEL assay. P. trifoliata seed extract reduced LNCaP and PC3 cell viability and induced cell cycle arrest at the G0/G1phase and apoptosis. In addition, a reduction in the AKT/mTOR pathway has been observed together with the up-regulation of stress-activated MAPK (p38 and c-Jun N-terminal kinase). Based on the study, the anti-growth effects of PT seed extract on prostate tumor cells give indications on the potential of the phytochemical drug for the treatment of this type of cancer. However, future in-depth studies are necessary to identify which components are mainly responsible for the anti-neoplastic response.
The Relationships between Intestinal Permeability and Target Antibodies for a Spectrum of Autoimmune Diseases
Authors: Kharrazian Datis , Herbert Martha , Lambert Jama
Published: November 2023

The worldwide prevalence of autoimmune diseases that have limited treatment options and preventive strategies is rapidly rising. There is growing evidence that the microbiota and the integrity of the intestinal barrier play a role in autoimmune diseases. The potential to evaluate intestinal barrier integrity for susceptible individuals and to determine whether restoring intestinal junction integrity impacts autoimmune diseases is an important area of research that requires further attention. In the intestinal permeability model of autoimmune diseases, the breakdown of the intestinal tight junction proteins (zonulin/occludin) allows bacteria, toxins, undigested dietary proteins, and other antigens to pass into the lumen, thereby increasing the number of inflammatory reactions and the activation of immune cells throughout the body. In this study, we investigate the relationship between zonulin/occludin antibodies, which are used to determine intestinal permeability, with autoantibodies used to diagnose autoimmunity. Our investigation may identify significant levels of circulating autoantibodies in human subjects with intestinal permeability compared to those without intestinal permeability. Furthermore, we identified that significant positive linear correlations between serum occludin/zonulin antibodies and circulating autoantibodies could be used to determine autoimmune diseases.
The Homeodomain–Leucine Zipper Subfamily I Contributes to Leaf Age- and Time-Dependent Resistance to Pathogens in Arabidopsis thaliana
Authors: Maeda Nami , Matsuta Fuko , Noguchi Takaya , Fujii Ayumu , Ishida Hikaru , Kitagawa Yudai , Ishikawa Atsushi
Published: November 2023

In Arabidopsis thaliana (Arabidopsis), nonhost resistance (NHR) is influenced by both leaf age and the moment of inoculation. While the circadian clock and photoperiod have been linked to the time-dependent regulation of NHR in Arabidopsis, the mechanism underlying leaf age-dependent NHR remains unclear. In this study, we investigated leaf age-dependent NHR to Pyricularia oryzae in Arabidopsis. Our findings revealed that this NHR type is regulated by both miR156-dependent and miR156-independent pathways. To identify the key players, we utilized rice-FOX Arabidopsis lines and identified the rice HD-Zip I OsHOX6 gene. Notably, OsHOX6 expression confers robust NHR to P. oryzae and Colletotrichum nymphaeae in Arabidopsis, with its effect being contingent upon leaf age. Moreover, we explored the role of AtHB7 and AtHB12, the Arabidopsis closest homologues of OsHOX6, by studying mutants and overexpressors in Arabidopsis–C. higginsianum interaction. AtHB7 and AtHB12 were found to contribute to both penetration resistance and post-penetration resistance to C. higginsianum in a leaf age- and time-dependent manner. These findings highlight the involvement of HD-Zip I AtHB7 and AtHB12, well-known regulators of development and abiotic stress responses, in biotic stress responses in Arabidopsis.
First Characterization and Regulatory Function of piRNAs in the Apis mellifera Larval Response to Ascosphaera apis Invasion
Authors: Sun Minghui , Fan Xiaoxue , Long Qi , Zang He , Zhang Yiqiong , Liu Xiaoyu , Feng Peilin , Song Yuxuan , Li Kunze , Wu Ying , Jiang Haibin , Chen Dafu , Guo Rui
Published: November 2023

piRNAs are a class of small non-coding RNAs that play essential roles in modulating gene expression and abundant biological processes. To decode the piRNA-regulated larval response of western honeybees (Apis mellifera) to Ascosphaera apis infection, the expression pattern of piRNAs in Apis mellifera ligustica larval guts after A. apis inoculation was analyzed based on previously obtained high-quality small RNA-seq datasets, followed by structural characterization, target prediction, regulatory network investigation, and functional dissection. Here, 504, 657, and 587 piRNAs were respectively identified in the 4-, 5-, and 6-day-old larval guts after inoculation with A. apis, with 411 ones shared. These piRNAs shared a similar length distribution and first base bias with mammal piRNAs. Additionally, 96, 103, and 143 DEpiRNAs were detected in the 4-, 5-, and 6-day-old comparison groups. Targets of the DEpiRNAs were engaged in diverse pathways such as the phosphatidylinositol signaling system, inositol phosphate metabolism, and Wnt signaling pathway. These targets were involved in three energy metabolism-related pathways, eight development-associated signaling pathways, and seven immune-relevant pathways such as the Jak-STAT signaling pathway. The expression trends of five randomly selected DEpiRNAs were verified using a combination of RT-PCR and RT-qPCR. The effective overexpression and knockdown of piR-ame-945760 in A. apis-infected larval guts were achieved by feeding a specific mimic and inhibitor. Furthermore, piR-ame-945760 negatively regulated the expression of two target immune mRNAs, SOCS5 and ARF1, in the larval gut during the A. apis infection. These findings indicated that the overall expression level of piRNAs was increased and the expression pattern of piRNAs in larval guts was altered due to the A. apis infection, DEpiRNAs were putative regulators in the A. apis-response of A. m. ligustica worker larvae. Our data provide not only a platform for the functional investigation of piRNAs in honeybees, especially in bee larvae, but also a foundation for illuminating the piRNA-involved mechanisms underlying the host response to the A. apis infection.
asb5a/asb5b Double Knockout Affects Zebrafish Cardiac Contractile Function
Authors: Cai Wanwan , Wang Yuequn , Luo Ying , Gao Luoqing , Zhang Jian , Jiang Zhigang , Fan Xiongwei , Li Fang , Xie Yulian , Wu Xiushan , Li Yongqing , Yuan Wuzhou
Published: November 2023

Ankyrin repeat and suppression-of-cytokine-signaling box (Asb) proteins, a subset of ubiquitin ligase E3, include Asb5 with six ankyrin-repeat domains. Zebrafish harbor two asb5 gene isoforms, asb5a and asb5b. Currently, the effects of asb5 gene inactivation on zebrafish embryonic development and heart function are unknown. Using CRISPR/Cas9, we generated asb5a-knockout zebrafish, revealing no abnormal phenotypes at 48 h post-fertilization (hpf). In situ hybridization showed similar asb5a and asb5b expression patterns, indicating the functional redundancy of these isoforms. Morpholino interference was used to target asb5b in wild-type and asb5a-knockout zebrafish. Knocking down asb5b in the wild-type had no phenotypic impact, but simultaneous asb5b knockdown in asb5a-knockout homozygotes led to severe pericardial cavity enlargement and atrial dilation. RNA-seq and cluster analyses identified significantly enriched cardiac muscle contraction genes in the double-knockout at 48 hpf. Moreover, semi-automatic heartbeat analysis demonstrated significant changes in various heart function indicators. STRING database/Cytoscape analyses confirmed that 11 cardiac-contraction-related hub genes exhibited disrupted expression, with three modules containing these genes potentially regulating cardiac contractile function through calcium ion channels. This study reveals functional redundancy in asb5a and asb5b, with simultaneous knockout significantly impacting zebrafish early heart development and contraction, providing key insights into asb5’s mechanism.
Improved 2,3-Butanediol Production Rate of Metabolically Engineered Saccharomyces cerevisiae by Deletion of RIM15 and Activation of Pyruvate Consumption Pathway
Authors: Sugimura Masahiko , Seike Taisuke , Okahashi Nobuyuki , Izumi Yoshihiro , Bamba Takeshi , Ishii Jun , Matsuda Fumio
Published: November 2023

Saccharomyces cerevisiae is a promising host for the bioproduction of higher alcohols, such as 2,3-butanediol (2,3-BDO). Metabolically engineered S. cerevisiae strains that produce 2,3-BDO via glycolysis have been constructed. However, the specific 2,3-BDO production rates of engineered strains must be improved. To identify approaches to improving the 2,3-BDO production rate, we investigated the factors contributing to higher ethanol production rates in certain industrial strains of S. cerevisiae compared to laboratory strains. Sequence analysis of 11 industrial strains revealed the accumulation of many nonsynonymous substitutions in RIM15, a negative regulator of high fermentation capability. Comparative metabolome analysis suggested a positive correlation between the rate of ethanol production and the activity of the pyruvate-consuming pathway. Based on these findings, RIM15 was deleted, and the pyruvate-consuming pathway was activated in YHI030, a metabolically engineered S. cerevisiae strain that produces 2,3-BDO. The titer, specific production rate, and yield of 2,3-BDO in the test tube-scale culture using the YMS106 strain reached 66.4 ± 4.4 mM, 1.17 ± 0.017 mmol (g dry cell weight h)−1, and 0.70 ± 0.03 mol (mol glucose consumed)−1. These values were 2.14-, 2.92-, and 1.81-fold higher than those of the vector control, respectively. These results suggest that bioalcohol production via glycolysis can be enhanced in a metabolically engineered S. cerevisiae strain by deleting RIM15 and activating the pyruvate-consuming pathway.
Percutaneous Modified Blalock–Taussig Shunt Closure in a Patient with Isolated Right Ventricular Hypoplasia
Authors: Krasic Stasa , Dizdarevic Ivan , Vranic Lana , Nešić Dejan , Vukomanovic Vladislav
Published: November 2023

Clinical presentation, course, and treatment for patients with isolated right ventricular (RV) hypoplasia (IRVH) depends on the degree of hypoplasia that is present—this is a spectrum from spontaneous maturation to Fontan circulation over time. An 8-month-old infant presented with IRVH; in the patient, a modified Blalock–Taussig (MBTS) shunt was closed percutaneously after spontaneous RV function recovery. A female newborn was diagnosed with differential cyanosis at birth. The echocardiography showed a hypertrophic RV with a small cavity, a right–left shunt on the atrial septal defect, an almost closed ductus arteriosus (DA), and a small tricuspid valve ring (Z-score-2) with mild regurgitation (pressure gradient 30 mmHg). On the 4th day of life, the patient showed deepened cyanosis and hyperlactatemia was registered. The echocardiography examination revealed a closed DA. Right ventriculography performed on the 5th day of life evidenced the presence of a small hypertrabeculated RV. The pressure in the RV increased. A right-side MBTS was created on the 6th day of life. Further echocardiographic findings indicated a gradual development of the RV and a decrease in RV pressure. MBTS occlusion was performed when the patient was 8 months old. Vital parameters were monitored invasively and noninvasively after the balloon occlusion of MBTS. Percutaneous MBTS occlusion was successfully performed using an Amplatzer vascular plug 2 (AVP2). During the follow-up period, the patient was found to have maintained a normal percutaneous oxyhaemoglobin blood saturation.
Anaesthesia for Minimally Invasive Cardiac Surgery
Authors: Aston Daniel , Zeloof Daniel , Falter Florian
Published: November 2023

Minimally invasive cardiac surgery (MICS) has been used since the 1990s and encompasses a wide range of techniques that lack full sternotomy, including valve and coronary artery graft surgery as well as transcatheter procedures. Due to the potential benefits offered to patients by MICS, these procedures are becoming more common. Unique anaesthetic knowledge and skills are required to overcome the specific challenges presented by MICS, including mastery of transoesophageal echocardiography (TOE) and the provision of thoracic regional analgesia. This review evaluates the relevance of MICS to the anaesthetist and discusses pre-operative assessment, the relevant adjustments to intra-operative conduct that are necessary for these techniques, as well as post-operative care and what is known about outcomes.
Enhanced Wear Resistance in Carbon Nanotube-Filled Bio-Epoxy Composites: A Comprehensive Analysis via Scanning Electron Microscopy and Atomic Force Microscopy
Authors: Hiremath Pavan , Ranjan Rakesh , DeSouza Vir , Bhat Ritesh , Patil Santosh , Maddodi Balakrishna , Shivamurthy B. , Perez Teresa Castillo , Naik Nithesh
Published: November 2023

This investigation focuses on the wear resistance and surface morphology of multi-walled carbon nanotube (MWCNT)-filled bio-based epoxy composites. This study examines the impact of different MWCNT concentrations (0 Wt.%, 0.25 Wt.%, 0.50 Wt.%, and 0.75 Wt.%) on the wear properties of these composites. Techniques such as scanning electron microscopy (SEM) and atomic force microscopy (AFM) were utilized for comprehensive surface characterization. The results demonstrated a direct correlation between the MWCNT content and the wear resistance of the composites, which were corroborated by robust statistical analysis. Furthermore, SEM and AFM observations disclosed incremental enhancements in both wear resistance and surface quality as the MWCNT concentration increased. This research not only augments the understanding of wear mechanisms in bio-based epoxy composites but also aligns with the burgeoning focus on sustainable materials.
Formation Mechanism of Heavy Hydrocarbon Carbon Isotope Anomalies in Natural Gas from Ordovician Marine Carbonate in the Ordos Basin
Authors: Zhang Wen , Liu Wenhui , Wang Xiaofeng , Huang Zhengliang , Kong Qingfen , Luo Houyong , Zhang Dongdong , Liu Peng , Chen Xiaoyan , Cai Zhenghong
Published: November 2023

Interactive depositional systems of marine carbonates and gypsum salt rocks are closely related to natural gas reservoirs. Despite continuous progress in the exploration of new areas of marine carbonate genesis within the Ordos Basin, the source and mechanism of “sub-salt” natural gas genesis remains controversial. In this study, we investigated natural gas genesis through geochemical analysis of Lower Paleozoic natural gas samples from the mid-eastern Ordos Basin, obtaining natural gas composition data and carbon/hydrogen isotope compositions. We found evident differences between the geochemical characteristics of “sub-salt” and “post-salt” natural gas; the methane carbon isotope signature of “sub-salt” natural gas was lighter overall than that of “post-salt” natural gas, while the ethane carbon isotope composition of the former was more widely distributed and partially lighter than that of the latter. Combining these data with the regional geological background and existing geochemical data, it is evident that Ordovician “post-salt” natural gas comprises a composite of Upper Paleozoic coal-type gas and Lower Paleozoic oil-type gas, with the oil-type gas accounting for the largest proportion. In contrast, the “sub-salt” natural gas was formed and preserved within the Ordovician marine carbonates or sourced from deeper and more ancient hydrocarbon source rocks. Geochemical anomalies, including light methane carbon isotopes and ethane carbon isotopes with coal-type gas characteristics, are closely related to the prevalence of thermochemical sulfate reduction during hydrocarbon formation and reservoir formation of natural gas in “sub-salt” strata.
Indole Diterpenes from Mangrove Sediment-Derived Fungus Penicillium sp. UJNMF0740 Protect PC12 Cells against 6-OHDA-Induced Neurotoxicity via Regulating the PI3K/Akt Pathway
Authors: Wang Xin-Xin , Chen Ze-Long , Zhang Jun-Sheng , Liu Hai-Shan , Ma Ruo-Ping , Liu Xin-Ping , Li Ming-Yue , Ge Di , Bao Jie , Zhang Hua
Published: November 2023

In our chemical investigation into Penicillium sp. UJNMF0740 derived from mangrove sediment, fourteen indole diterpene analogs, including four new ones, are purified by multiple chromatographic separation methods, with their structures being elucidated by the analyses of NMR, HR-ESIMS, and ECD data. The antibacterial and neuroprotective effects of these isolates were examined, and only compounds 6 and 9 exhibited weak antibacterial activity, while compounds 5, 8, and 10 showed protective effects against the injury of PC12 cells induced by 6-hydroxydopamine (6-OHDA). Additionally, compound 5 could suppress the apoptosis and production of reactive oxygen species (ROS) in 6-OHDA-stimulated PC12 cells as well as trigger the phosphorylation of PI3K and Akt. Taken together, our work enriches the structural diversity of indole diterpenes and hints that compounds of this skeleton can repress the 6-OHDA-induced apoptosis of PC12 cells via regulating the PI3K/Akt signaling pathway, which provides evidence for the future utilization of this fascinating class of molecules as potential neuroprotective agents.
Association of the HALP Score with Dyslipidemia: A Large, Nationwide Retrospective Study
Authors: Alshuweishi Yazeed , Basudan Ahmed M. , Alfaifi Mohammed , Daghistani Hussam , Alfhili Mohammad A.
Published: November 2023

Background and Objectives: Dyslipidemia is a major risk factor for cardiovascular disease (CVD). The identification of new biomarkers that may enhance the risk assessment of lipid abnormalities is a promising approach in improving risk prediction of CVD. There is no information on the association of the hemoglobin, albumin, lymphocyte, and platelet (HALP) score with dyslipidemia. The aim of this study was to investigate the clinical utility of the HALP score in light of dyslipidemia. Materials and Methods: A retrospective analysis of 7192 subjects was initiated to assess the association between the HALP score and disturbed lipid markers. Medians were compared by Mann–Whitney U or Kruskal–Wallis tests and the diagnostic performance and risk assessment were calculated. Results: Median HALP score among all subjects was 53.3, with varying values between males and females. Notably, median HALP was significantly elevated in all forms of dyslipidemia and among males and females irrespective of age. The odds of having elevated HALP score values were significantly higher in all lipid abnormalities. Moreover, HALP score was significantly yet weakly correlated with lipid markers, while the highest diagnostic accuracy of the HALP score was observed with an elevated ratio of total cholesterol to high-density lipoprotein (TC/HDL) (area under the curve, AUC = 0.6411, p < 0.0001). The decision curve analysis (DCA) showed that the HALP score can reliably predict the presence of dyslipidemia. Conclusions: This study demonstrates that the HALP score is a novel, cost-effective index that is associated with a disturbed lipid profile. Further investigation of the nature of this association is needed.
An Observational Study of 147 Psoriasis Patients: Overweightness and Obesity as a Significant Clinical Factors Correlated with Psoriasis
Authors: Czarnecka Anna , Zabłotna Monika , Purzycka-Bohdan Dorota , Nowicki Roman J. , Szczerkowska-Dobosz Aneta
Published: November 2023

Background and Objectives: Psoriasis is a common, chronic, and immune-mediated inflammatory skin disease recognized to lead to a wide range of comorbid disorders, mainly obesity. The study aimed to evaluate the problem of overweightness and obesity among psoriasis patients in the context of their prevalence and influence on the disease course. Materials and Methods: The study group encompassed 147 adult patients with plaque psoriasis. Results: The prevalences of overweightness (39.46%) and obesity (37.41%) demonstrated in the study showed the strong predisposition of psoriatic patients for abnormal body mass. The vast majority (77%) of subjects with psoriatic arthritis were overweight or obese. The results of the correlation analysis revealed the significant impacts of overweightness and obesity, as defined by the BMI index, on modifying the severity of psoriasis (as assessed by the PASI with a correlation coefficient of R = 0.23, p = 0.016; and BSA values with a correlation coefficient of R = 0.21, p = 0.023), particularly in contrast to patients with a normal body mass. Conclusions: Overweightness and obesity constitute a major health burden among psoriatic patients, influencing the disease course and severity. Enhanced understanding of the phenomenon may directly translate into improving disease management and overall patient care.