bluuebunny/crossref_metadata_2025 huggingface dataset:
A new interhemispheric teleconnection increases predictability of winter precipitation in southwestern US
Authors: Mamalakis Antonios , Yu Jin-Yi , Randerson James T. , AghaKouchak Amir , Foufoula-Georgiou Efi
Published: June 2018

Reliable prediction of seasonal precipitation in the southwestern US (SWUS) remains a challenge with significant implications for the economy, water security and ecosystem management of the region. Winter precipitation in the SWUS has been linked to several climate modes, including the El Niño-Southern Oscillation (ENSO), with limited predictive ability. Here we report evidence that late-summer sea surface temperature and geopotential height anomalies close to New Zealand exhibit higher correlation with SWUS winter precipitation than ENSO, enhancing the potential for earlier and more accurate prediction. The teleconnection depends on a western Pacific ocean-atmosphere pathway, whereby sea surface temperature anomalies propagate from the southern to the northern hemisphere during boreal summer. Analysis also shows an amplification of this new teleconnection over the past four decades. Our work highlights the need to understand the dynamic nature of the coupled ocean-atmosphere system in a changing climate for improving future predictions of regional precipitation.
Inferring collective dynamical states from widely unobserved systems
Authors: Wilting Jens , Priesemann Viola
Published: June 2018

When assessing spatially extended complex systems, one can rarely sample the states of all components. We show that this spatial subsampling typically leads to severe underestimation of the risk of instability in systems with propagating events. We derive a subsampling-invariant estimator, and demonstrate that it correctly infers the infectiousness of various diseases under subsampling, making it particularly useful in countries with unreliable case reports. In neuroscience, recordings are strongly limited by subsampling. Here, the subsampling-invariant estimator allows to revisit two prominent hypotheses about the brain’s collective spiking dynamics: asynchronous-irregular or critical. We identify consistently for rat, cat, and monkey a state that combines features of both and allows input to reverberate in the network for hundreds of milliseconds. Overall, owing to its ready applicability, the novel estimator paves the way to novel insight for the study of spatially extended dynamical systems.
Ocean acidification conditions increase resilience of marine diatoms
Authors: Valenzuela Jacob J. , López García de Lomana Adrián , Lee Allison , Armbrust E. V. , Orellana Mónica V. , Baliga Nitin S.
Published: June 2018

The fate of diatoms in future acidified oceans could have dramatic implications on marine ecosystems, because they account for ~40% of marine primary production. Here, we quantify resilience of Thalassiosira pseudonana in mid-20th century (300 ppm CO2) and future (1000 ppm CO2) conditions that cause ocean acidification, using a stress test that probes its ability to recover from incrementally higher amount of low-dose ultraviolet A (UVA) and B (UVB) radiation and re-initiate growth in day–night cycles, limited by nitrogen. While all cultures eventually collapse, those growing at 300 ppm CO2 succumb sooner. The underlying mechanism for collapse appears to be a system failure resulting from “loss of relational resilience,” that is, inability to adopt physiological states matched to N-availability and phase of the diurnal cycle. Importantly, under elevated CO2 conditions diatoms sustain relational resilience over a longer timeframe, demonstrating increased resilience to future acidified ocean conditions. This stress test framework can be extended to evaluate and predict how various climate change associated stressors may impact microbial community resilience.
Crossover from lattice to plasmonic polarons of a spin-polarised electron gas in ferromagnetic EuO
Authors: Riley J. M. , Caruso F. , Verdi C. , Duffy L. B. , Watson M. D. , Bawden L. , Volckaert K. , van der Laan G. , Hesjedal T. , Hoesch M. , Giustino F. , King P. D. C.
Published: June 2018

Strong many-body interactions in solids yield a host of fascinating and potentially useful physical properties. Here, from angle-resolved photoemission experiments and ab initio many-body calculations, we demonstrate how a strong coupling of conduction electrons with collective plasmon excitations of their own Fermi sea leads to the formation of plasmonic polarons in the doped ferromagnetic semiconductor EuO. We observe how these exhibit a significant tunability with charge carrier doping, leading to a polaronic liquid that is qualitatively distinct from its more conventional lattice-dominated analogue. Our study thus suggests powerful opportunities for tailoring quantum many-body interactions in solids via dilute charge carrier doping.
Tuneable near white-emissive two-dimensional covalent organic frameworks
Authors: Li Xing , Gao Qiang , Wang Juefan , Chen Yifeng , Chen Zhi-Hui , Xu Hai-Sen , Tang Wei , Leng Kai , Ning Guo-Hong , Wu Jishan , Xu Qing-Hua , Quek Su Ying , Lu Yixin , Loh Kian Ping
Published: June 2018

Most two-dimensional (2D) covalent organic frameworks (COFs) are non-fluorescent in the solid state even when they are constructed from emissive building blocks. The fluorescence quenching is usually attributed to non-irradiative rotation-related or π–π stacking-caused thermal energy dissipation process. Currently there is a lack of guiding principle on how to design fluorescent, solid-state material made of COF. Herein, we demonstrate that the eclipsed stacking structure of 2D COFs can be used to turn on, and tune, the solid-state photoluminescence from non-emissive building blocks by the restriction of intramolecular bond rotation via intralayer and interlayer hydrogen bonds among highly organized layers in the eclipse-stacked COFs. Our COFs serve as a platform whereby the size of the conjugated linkers and side-chain functionalities can be varied, rendering the emission colour-tuneable from blue to yellow and even white. This work provides a guide to design new solid-state emitters using COFs.
The TRPV4 channel links calcium influx to DDX3X activity and viral infectivity
Authors: Doñate-Macián P. , Jungfleisch J. , Pérez-Vilaró G. , Rubio-Moscardo F. , Perálvarez-Marín A. , Diez J. , Valverde M. A.
Published: June 2018

Ion channels are well placed to transduce environmental cues into signals used by cells to generate a wide range of responses, but little is known about their role in the regulation of RNA metabolism. Here we show that the TRPV4 cation channel binds the DEAD-box RNA helicase DDX3X and regulates its function. TRPV4-mediated Ca2+ influx releases DDX3X from the channel and drives DDX3X nuclear translocation, a process that involves calmodulin (CaM) and the CaM-dependent kinase II. Genetic depletion or pharmacological inhibition of TRPV4 diminishes DDX3X-dependent functions, including nuclear viral export and translation. Furthermore, TRPV4 mediates Ca2+ influx and nuclear accumulation of DDX3X in cells exposed to the Zika virus or the purified viral envelope protein. Consequently, targeting of TRPV4 reduces infectivity of dengue, hepatitis C and Zika viruses. Together, our results highlight the role of TRPV4 in the regulation of DDX3X-dependent control of RNA metabolism and viral infectivity.
Lipid vesicles chaperone an encapsulated RNA aptamer
Authors: Saha Ranajay , Verbanic Samuel , Chen Irene A.
Published: June 2018

The organization of molecules into cells is believed to have been critical for the emergence of living systems. Early protocells likely consisted of RNA functioning inside vesicles made of simple lipids. However, little is known about how encapsulation would affect the activity and folding of RNA. Here we find that confinement of the malachite green RNA aptamer inside fatty acid vesicles increases binding affinity and locally stabilizes the bound conformation of the RNA. The vesicle effectively ‘chaperones’ the aptamer, consistent with an excluded volume mechanism due to confinement. Protocellular organization thereby leads to a direct benefit for the RNA. Coupled with previously described mechanisms by which encapsulated RNA aids membrane growth, this effect illustrates how the membrane and RNA might cooperate for mutual benefit. Encapsulation could thus increase RNA fitness and the likelihood that functional sequences would emerge during the origin of life.
Controlled synthesis of highly-branched plasmonic gold nanoparticles through peptoid engineering
Authors: Yan Feng , Liu Lili , Walsh Tiffany R. , Gong Yu , El-Khoury Patrick Z. , Zhang Yanyan , Zhu Zihua , De Yoreo James J. , Engelhard Mark H. , Zhang Xin , Chen Chun-Long
Published: June 2018

In nature, specific biomolecules interacting with mineral precursors are responsible for the precise production of nanostructured inorganic materials that exhibit complex morphologies and superior performance. Despite advances in developing biomimetic approaches, the design rules for creating sequence-defined molecules that lead to the synthesis of inorganic nanomaterials with predictable complex morphologies are unknown. Herein we report the design of sequence-defined peptoids for controlled synthesis of highly branched plasmonic gold particles. By engineering peptoid sequences and investigating the resulting particle formation mechanisms, we develop a rule of thumb for designing peptoids that predictively enabled the morphological evolution from spherical to coral-shaped nanoparticles. Through a combination of hyperspectral UV-Vis extinction microscopy and three-photon photoemission electron microscopy, we demonstrate that the individual coral-shaped gold nanoparticles exhibit a plasmonic enhancement as high as 105-fold. This research significantly advances our ultimate vision of predictive bio-inspired materials synthesis using sequence-defined synthetic molecules that mimic proteins and peptides.
Thermo-responsive gels that absorb moisture and ooze water
Authors: Matsumoto Kazuya , Sakikawa Nobuki , Miyata Takashi
Published: June 2018

The water content of thermo-responsive hydrogels can be drastically altered by small changes in temperature because their polymer chains change from hydrophilic to hydrophobic above their low critical solution temperature (LCST). In general, such smart hydrogels have been utilized in aqueous solutions or in their wet state, and no attempt has been made to determine the phase-transition behavior of the gels in their dried states. Here we demonstrate an application of the thermo-responsive behavior of an interpenetrating polymer network (IPN) gel comprising thermo-responsive poly(N-isopropylacrylamide) and hydrophilic sodium alginate networks in their dried states. The dried IPN gel absorbs considerable moisture from air at temperatures below its LCST and oozes the absorbed moisture as liquid water above its LCST. These phenomena provide energy exchange systems in which moisture from air can be condensed to liquid water using the controllable hydrophilic/hydrophobic properties of thermo-responsive gels with a small temperature change.
Author Correction: A comprehensive model for assessment of liver stage therapies targeting Plasmodium vivax and Plasmodium falciparum
Authors: Roth Alison , Maher Steven P. , Conway Amy J. , Ubalee Ratawan , Chaumeau Victor , Andolina Chiara , Kaba Stephen A. , Vantaux Amélie , Bakowski Malina A. , Thomson-Luque Richard , Adapa Swamy Rakesh , Singh Naresh , Barnes Samantha J. , Cooper Caitlin A. , Rouillier Mélanie , McNamara Case W. , Mikolajczak Sebastian A. , Sather Noah , Witkowski Benoît , Campo Brice , Kappe Stefan H. I. , Lanar David E. , Nosten François , Davidson Silas , Jiang Rays H. Y. , Kyle Dennis E. , Adams John H.
Published: June 2018

The original version of this Article contained an error in the spelling of Richard Thomson-Luque, which was incorrectly given as Richard Thomson Luque. This error has now been corrected in both the PDF and HTML versions of the Article.
A parthenogenetic quasi-program causes teratoma-like tumors during aging in wild-type C. elegans
Authors: Wang Hongyuan , Zhao Yuan , Ezcurra Marina , Benedetto Alexandre , Gilliat Ann F. , Hellberg Josephine , Ren Ziyu , Galimov Evgeniy R. , Athigapanich Trin , Girstmair Johannes , Telford Maximilian J. , Dolphin Colin T. , Zhang Zhizhou , Gems David
Published: June 2018

A long-standing belief is that aging (senescence) is the result of stochastic damage accumulation. Alternatively, senescent pathology may also result from late-life, wild-type gene action (i.e., antagonistic pleiotropy, as argued by Williams) leading to non-adaptive run-on of developmental programs (or quasi-programs) (as suggested more recently by Blagosklonny). In this study, we use existing and new data to show how uterine tumors, a prominent form of senescent pathology in the nematode Caenorhabditis elegans, likely result from quasi-programs. Such tumors develop from unfertilized oocytes which enter the uterus and become hypertrophic and replete with endoreduplicated chromatin masses. Tumor formation begins with ovulation of unfertilized oocytes immediately after exhaustion of sperm stocks. We show that the timing of this transition between program and quasi-program (i.e., the onset of senescence), and the onset of tumor formation, depends upon the timing of sperm depletion. We identify homology between uterine tumors and mammalian ovarian teratomas, which both develop from oocytes that fail to mature after meiosis I. In teratomas, futile activation of developmental programs leads to the formation of differentiated structures within the tumor. We report that older uterine tumors express markers of later embryogenesis, consistent with teratoma-like activation of developmental programs. We also present evidence of coupling of distal gonad atrophy to oocyte hypertrophy. This study shows how the Williams Blagosklonny model can provide a mechanistic explanation of this component of C. elegans aging. It also suggests etiological similarity between teratoma and some forms of senescent pathology, insofar as both are caused by quasi-programs.
The Prognostic Value of Nodal Staging in Triple-Negative Breast Cancer — A Cohort from China
Authors: Yin Liu , Shuang Hao , Sheng Chen , Liang Huang , Sun Xiang-Jie , Yang Wen-Tao , Shao Zhi-Ming
Published: June 2018

To evaluate the clinical outcomes and relationship between tumor size, lymph node status, and prognosis in a large cohort of patients with triple–negative breast cancer (TNBC).849 Patients were categorized by tumor size and nodal status. The Kaplan-Meier method and Cox proportional hazards models were used to determine the association of nodal status and tumor size with survival outcomes. A Sidak adjustment was used for pairwise group comparisons. We conducted six pairwise comparisons between different node status. In univariate and multivariate analyses, it was indicated that N0 patients had similar prognoses as N1 patients (P = 0.072), and the OS of both of these groups was significantly better than that of N2/N3 patients (N0 vs N2, P < 0.001; N0 vs N3, P < 0.001; N1 vs N2, P = 0.014; N1 vs N3, P = 0.005). In summary, we report that in Chinese patients with triple-negative breast cancer, a greater difference in survival was observed between N1 and N2 than between N0 and N1, warranting the possible need of more intensive chemotherapy for N2-3 patients. We also found that tumor size made an impact on survival when lymph nodes were extensively involved, a finding that needs longer follow-up and further validation.
Using co-occurrence information and trait composition to understand individual plant performance in grassland communities
Authors: Breitschwerdt Eva , Jandt Ute , Bruelheide Helge
Published: June 2018

Depending on the strength of environmental filtering and competitive exclusion, successful colonizers of plant communities show varying degrees of similarity to resident species with respect to functional traits. For the present study, colonizer’s performance was assessed in relation to the degree of fit with the resident community, and in addition, in relation to the community’s trait profile and the environmental factors at the study locations. The two-year field experiment investigated the relative growth rates of 130 species that had been transplanted into German grassland communities varying in intensities of land-use. The transplanted species were selected in accordance with the following scenarios: species with highly similar or dissimilar traits to residents, species with highest degree of co-occurrence with resident species and species chosen randomly from the local species pool. The performance of transplanted phytometers depended on the scenario according to which the species were selected, on community trait diversity, and in addition, often on the interaction of both and on land use intensity. The total amount of explained variance in performance was low, but increased considerably when species identity was taken into account. In general, individuals in the co-occurrence scenario performed better than those selected based on trait information or those selected randomly. Different predictors were important in different seasons, demonstrating a limited temporal validity of performance models.
Real Time Imaging and Dynamics of Hippocampal Zn2+ under Epileptic Condition Using a Ratiometric Fluorescent Probe
Authors: Santhakumar Hema , Nair Resmi. V. , Philips Divya Susan , Shenoy Sachin J. , Thekkuveettil Anoopkumar , Ajayaghosh Ayyappanpillai , Jayasree Ramapurath. S.
Published: June 2018

Zinc, the essential trace element in human body exists either in the bound or free state, for both structural and functional roles. Insights on Zn2+ distribution and its dynamics are essential in view of the fact that Zn2+ dyshomeostasis is a risk factor for epileptic seizures, Alzheimer’s disease, depression, etc. Herein, a bipyridine bridged bispyrrole (BP) probe is used for ratiometric imaging and quantification of Zn2+ in hippocampal slices. The green fluorescence emission of BP shifts towards red in the presence of Zn2+. The probe is used to detect and quantify the exogenous and endogenous Zn2+ in glioma cells and hippocampal slices. The dynamics of chelatable zinc ions during epileptic condition is studied in the hippocampal neurons, in vitro wherein the translocation of Zn2+ from presynaptic to postsynaptic neuronal bodies is imaged and ratiometrically quantified. Raman mapping technique is used to confirm the dynamics of Zn2+ under epileptic condition. Finally, the Zn2+ distribution was imaged in vivo in epileptic rats and the total Zn2+ in rat brain was quantified. The results favour the use of BP as an excellent Zn2+ imaging probe in biological system to understand the zinc associated diseases and their management.
Complete Anopheles funestus mitogenomes reveal an ancient history of mitochondrial lineages and their distribution in southern and central Africa
Authors: Jones Christine M. , Lee Yoosook , Kitchen Andrew , Collier Travis , Pringle Julia C. , Muleba Mbanga , Irish Seth , Stevenson Jennifer C. , Coetzee Maureen , Cornel Anthony J. , Norris Douglas E. , Carpi Giovanna
Published: June 2018

Anopheles funestus s.s. is a primary vector of malaria in sub-Saharan Africa. Despite its important role in human Plasmodium transmission, evolutionary history, genetic diversity, and population structure of An. funestus in southern and central Africa remains understudied. We deep sequenced, assembled, and annotated the complete mitochondrial genome of An. funestus s.s. for the first time, providing a foundation for further genetic research of this important malaria vector species. We further analyzed the complete mitochondrial genomes of 43 An. funestus s.s. from three sites in Zambia, Democratic Republic of the Congo, and Tanzania. From these 43 mitogenomes we identified 41 unique haplotypes that comprised 567 polymorphic sites. Bayesian phylogenetic reconstruction confirmed the co-existence of two highly divergent An. funestus maternal lineages, herein defined as lineages I and II, in Zambia and Tanzania. The estimated coalescence time of these two mitochondrial lineages is ~500,000 years ago (95% HPD 426,000–594,000 years ago) with subsequent independent diversification. Haplotype network and phylogenetic analysis revealed two major clusters within lineage I, and genetic relatedness of samples with deep branching in lineage II. At this time, data suggest that the lineages are partially sympatric. This study illustrates that accurate retrieval of full mitogenomes of Anopheles vectors enables fine-resolution studies of intraspecies genetic relationships, population differentiation, and demographic history. Further investigations on whether An. funestus mitochondrial lineages represent biologically meaningful populations and their potential implications for malaria vector control are warranted.
Spatial and Environmental Variation of the Human Hair Microbiota
Authors: Brinkac Lauren , Clarke Thomas H. , Singh Harinder , Greco Chris , Gomez Andres , Torralba Manolito G. , Frank Bryan , Nelson Karen E.
Published: June 2018

The skin is a complex living ecosystem harboring diverse microbial communities. Its highly variable properties and influence of intrinsic and extrinsic factors creates unique microenvironments where niche-specific microbes thrive. As part of the skin, hair supports its own microbial habitat that is also intra and inter-personal variable. This little explored substrate has significant potential in forensics microbiome research due to the unique signatures that are available on an individual. To further investigate this, we explored the hair microbiota from scalp and pubic regions in healthy adults to investigate how the hair shaft microenvironment varies microbially. Our results suggest that there are distinct differences between the microbial communities identified on hair shafts originating from different parts of the body. The taxonomic composition of the communities from different hair sources are most reminiscent of those identified from their associated cutaneous region. We further demonstrate that the hair microbiota varies by geographical origin and has the potential to be used to predict the source location of the hair.
Prolonged photo-carriers generated in a massive-and-anisotropic Dirac material
Authors: Nurmamat Munisa , Ishida Yukiaki , Yori Ryohei , Sumida Kazuki , Zhu Siyuan , Nakatake Masashi , Ueda Yoshifumi , Taniguchi Masaki , Shin Shik , Akahama Yuichi , Kimura Akio
Published: June 2018

Transient electron-hole pairs generated in semiconductors can exhibit unconventional excitonic condensation. Anisotropy in the carrier mass is considered as the key to elongate the life time of the pairs, and hence to stabilize the condensation. Here we employ time- and angle-resolved photoemission spectroscopy to explore the dynamics of photo-generated carriers in black phosphorus. The electronic structure above the Fermi level has been successfully observed, and a massive-and-anisotropic Dirac-type dispersions are confirmed; more importantly, we directly observe that the photo-carriers generated across the direct band gap have the life time exceeding 400 ps. Our finding confirms that black phosphorus is a suitable platform for excitonic condensations, and also open an avenue for future applications in broadband mid-infrared BP-based optoelectronic devices.
On modelling the relationship between vegetation greenness and water balance and land use change
Authors: Berry Sandra L. , Mackey Brendan
Published: June 2018

Here we sought a biologically meaningful, climate variable that captures water-energy availability and is suitable for high resolution (250 m × 250 m) modelling of the fraction of photosynthetically active radiation intercepted by the sunlit canopy (F
V
) derived from a 10-year (July 2000 – June 2010) time series of Moderate Resolution Imaging Spectroradiometer (MODIS) Normalized difference vegetation index (NDVI) satellite imagery for Australia. The long-term mean annual evaporation deficit, and mean annual water availability indices all yielded strong linear relationships with mean F
V
($$\overline{{{\boldsymbol{F}}}_{{\boldsymbol{V}}}}$$

F

V

¯

, %). We hypothesised whether some of the scatter about the relationships was related to land-use changes that have disrupted the vegetation-climate-soil equilibrium. Using continental-scale spatial data layers of protected area status and vegetation condition classes we repeated our analyses with restricted datasets. $$\overline{{{\boldsymbol{F}}}_{{\boldsymbol{V}}}}$$

F

V

¯

of intact native vegetation within protected areas was greater than all modified vegetation classes. There was a consistent decline in the slopes of the regression relationships with increasing intensity of woody vegetation clearing and livestock grazing. Where native vegetation has been transformed by land use there was a 25% reduction in predicted $$\overline{{{\boldsymbol{F}}}_{{\boldsymbol{V}}}}$$

F

V

¯

.
Measurement and Evaluation of Quantitative Performance of PET/CT Images before a Multicenter Clinical Trial
Authors: Zhu Yanjia , Geng Caizheng , Huang Jia , Liu Juzhen , Wu Ning , Xin Jun , Xu Hao , Yu Lijuan , Geng Jianhua
Published: June 2018

To ensure the reliability of the planned multi-center clinical trial, we assessed the consistence and comparability of the quantitative parameters of the eight PET/CT units that will be used in this trial. PET/CT images were scanned using a PET NEMA image quality phantom (Biodex) on the eight units of Discovery PET/CT 690 from GE Healthcare. The scanning parameters were the same with the ones to be used in the planned trial. The 18F-NaF concentration in the background was 5.3 kBq/ml, while the ones in the spheres of diameter 37 mm, 22 mm, 17 mm and 10 mm were 8:1 as to that of the background and the ones in the spheres of diameter 28 mm and 13 mm were 0 kBq/ml. The consistency of hot sphere recovery coefficient (HRC), cold sphere recovery coefficient (CRC), hot sphere contrast (QH) and cold sphere contrast (Qc) among these 8 PET/CTs was analyzed. The variation of the main quantitative parameters of the eight PET/CT systems was within 10%, which is acceptable for the clinical trial.
Grassland ecosystem responses to climate change and human activities within the Three-River Headwaters region of China
Authors: Han Ze , Song Wei , Deng Xiangzheng , Xu Xinliang
Published: June 2018

The Three-River Headwaters region (TRHR) of China is an important part of the Qinghai-Tibetan Plateau. Although the TRHR is rich in grassland resources, the ecosystem of this area is extremely fragile. Natural and artificial interference have been key to the development of grassland ecosystem spatiotemporal heterogeneity, although the intensity and mode of their influence on ecological processes varies depending on scale; analyses in this area are therefore also scale-dependent. We use multi-scale nested data to analyze the mechanisms underlying the influence of climate change and human activities on grassland net primary productivity (NPP) by applying a multi-level modeling approach. The results of this study show that: (1) The annual grassland NPP of the TRHR has risen in a wavelike pattern over time, increasing by 39.88% overall; (2) Differences of 54.9% and 41.1% in temporal grassland NPP can be attributed to variations between these watersheds as well as county characteristics, and; (3) Although the ‘warm and moist’ climate trend seen over the course of this study has proved beneficial in enhancing grassland NPP, the rate of increase has tended to be faster in relatively dry and warm regions. Economic development and population growth have both exerted negative impacts on grassland NPP.
DNA barcoding and a precise morphological comparison revealed a cryptic species in the Nippolachnus piri complex (Hemiptera: Aphididae: Lachninae)
Authors: Kanturski Mariusz , Lee Yerim , Choi Jinyeong , Lee Seunghwan
Published: June 2018

Nippolachnusis a small Palaearctic-Oriental genus of very characteristic aphids that live on the leaves of woody Rosaceae. One species,N.piri, has hitherto been regarded to be widely distributed and relatively polyphagous. Members of this genus are considered to be easy to recognize due to the absence of the ocular tubercle and triommatidia on the head. We conducted research on the morphology and generic characters ofNippolachnus piricomplex using scanning electron microscopy (for the first time) and DNA barcoding. We analyzedN.piripopulations onPyrusand other plants (Eriobotrya,RhaphiolepisandSorbus) in Japan and the Republic of Korea. Specifically, a high genetic divergence value was found between theN.piripopulations associated with different host plants. SEM investigation of the head capsule revealed that a triommatidium is present under the compound eye, despite their lack of an ocular tubercle. We proposeNippolachnus micromeliShinji, 1924stat. nov. as a cryptic species in theN.piricomplex based on a morphological comparison, DNA barcoding and different host-plant associations. Illustrations and descriptions of studied species are given. Morphological keys to the apterae and alatae of all known species of the genusNippolachnusare also provided.
Synthesis, antimicrobial activity and conformational analysis of the class IIa bacteriocin pediocin PA-1 and analogs thereof
Authors: Bédard François , Hammami Riadh , Zirah Séverine , Rebuffat Sylvie , Fliss Ismail , Biron Eric
Published: June 2018

The antimicrobial peptide pediocin PA-1 is a class IIa bacteriocin that inhibits several clinically relevant pathogens including Listeria spp. Here we report the synthesis and characterization of whole pediocin PA-1 and novel analogs thereof using a combination of solid- and solution-phase strategies to overcome difficulties due to instability and undesired reactions. Pediocin PA-1 thus synthesized was a potent inhibitor of Listeria monocytogenes (MIC = 6.8 nM), similar to the bacteriocin produced naturally by Pediococcus acidilactici. Of particular interest is that linear analogs lacking both of the disulfide bridges characterizing pediocin PA-1 were as potent. One linear analog was also a strong inhibitor of Clostridium perfringens, another important food-borne pathogen. These results are discussed in light of conformational information derived from circular dichroism, solution NMR spectroscopy and structure-activity relationship studies.
Circadian clock component PERIOD2 regulates diurnal expression of Na+/H+ exchanger regulatory factor-1 and its scaffolding function
Authors: Tsurudome Yuya , Koyanagi Satoru , Kanemitsu Takumi , Katamune Chiharu , Oda Masayuki , Kanado Yuki , Kato Mizuki , Morita Akari , Tahara Yu , Matsunaga Naoya , Shibata Shigenobu , Ohdo Shigehiro
Published: June 2018

A number of diverse cell-surface proteins are anchored to the cytoskeleton via scaffold proteins. Na+/H+ exchanger regulatory factor-1 (NHERF1), encoded by the Slc9a3r1 gene, functions as a scaffold protein, which is implicated in the regulation of membrane expression of various cell-surface proteins. Here, we demonstrate that the circadian clock component PERIOD2 (PER2) modulates transcription of the mouse Slc9a3r1 gene, generating diurnal accumulation of NHERF1 in the mouse liver. Basal expression of Slc9a3r1 was dependent on transcriptional activation by p65/p50. PER2 bound to p65 protein and prevented p65/p50-mediated transactivation of Slc9a3r1. The time-dependent interaction between PER2 and p65 underlay diurnal oscillation in the hepatic expression of Slc9a3r1/NHERF1. The results of immunoprecipitation experiments and liquid chromatography-mass spectrometry analysis of mouse liver revealed that NHERF1 time-dependently interacted with fatty acid transport protein-5 (FATP5). Temporary accumulation of NHERF1 protein stabilized plasmalemmal localization of FATP5, thereby enhancing hepatic uptake of fatty acids at certain times of the day. Our results suggest an unacknowledged role for PER2 in regulating the diurnal expression of NHERF1 in mouse liver. This machinery also contributed to diurnal changes in the ability of hepatic cells to uptake fatty acids.
Optimisation of Substrate Angles for Multi-material and Multi-functional Inkjet Printing
Authors: Vaithilingam Jayasheelan , Saleh Ehab , Wildman Ricky D. , Hague Richard J. M. , Tuck Christopher J.
Published: June 2018

Three dimensional inkjet printing of multiple materials for electronics applications are challenging due to the limited material availability, inconsistencies in layer thickness between dissimilar materials and the need to expose the printed tracks of metal nanoparticles to temperature above 100 °C for sintering. It is envisaged that instead of printing a dielectric and a conductive material on the same plane, by printing conductive tracks on an angled dielectric surface, the required number of silver layers and consequently, the exposure of the polymer to high temperature and the build time of the component can be significantly reduced. Conductive tracks printed with a fixed print height (FH) showed significantly better resolution for all angles than the fixed slope (FS) sample where the print height varied to maintain the slope length. The electrical resistance of the tracks remained under 10Ω up to 60° for FH; whereas for the FS samples, the resistance remained under 10Ω for samples up to 45°. Thus by fixing the print height to 4 mm, precise tracks with low resistance can be printed at substrate angles up to 60°. By adopting this approach, the build height “Z” can be quickly attained with less exposure of the polymer to high temperature.
Improving Rice Modeling Success Rate with Ternary Non-structural Fertilizer Response Model
Authors: Li Juan , Zhang Mingqing , Chen Fang , Yao Baoquan
Published: June 2018

Fertilizer response modelling is an important technical approach to realize metrological fertilization on rice. With the goal of solving the problems of a low success rate of a ternary quadratic polynomial model (TPFM) and to expand the model’s applicability, this paper established a ternary non-structural fertilizer response model (TNFM) based on the experimental results from N, P and K fertilized rice fields. Our research results showed that the TNFM significantly improved the modelling success rate by addressing problems arising from setting the bias and multicollinearity in a TPFM. The results from 88 rice field trials in China indicated that the proportion of typical TNFMs that satisfy the general fertilizer response law of plant nutrition was 40.9%, while the analogous proportion of TPFMs was only 26.1%. The recommended fertilization showed a significant positive linear correlation between the two models, and the parameters N0, P0 and K0 that estimated the value of soil supplying nutrient equivalents can be used as better indicators of yield potential in plots where no N or P or K fertilizer was applied. The theoretical analysis showed that the new model has a higher fitting accuracy and a wider application range.
Bimorph material/structure designs for high sensitivity flexible surface acoustic wave temperature sensors
Authors: Tao R. , Hasan S. A. , Wang H. Z. , Zhou J. , Luo J. T. , McHale G. , Gibson D. , Canyelles-Pericas P. , Cooke M. D. , Wood D. , Liu Y. , Wu Q. , Ng W. P. , Franke T. , Fu Y. Q.
Published: June 2018

A fundamental challenge for surface acoustic wave (SAW) temperature sensors is the detection of small temperature changes on non-planar, often curved, surfaces. In this work, we present a new design methodology for SAW devices based on flexible substrate and bimorph material/structures, which can maximize the temperature coefficient of frequency (TCF). We performed finite element analysis simulations and obtained theoretical TCF values for SAW sensors made of ZnO thin films (~5 μm thick) coated aluminum (Al) foil and Al plate substrates with thicknesses varied from 1 to 1600 μm. Based on the simulation results, SAW devices with selected Al foil or plate thicknesses were fabricated. The experimentally measured TCF values were in excellent agreements with the simulation results. A normalized wavelength parameter (e.g., the ratio between wavelength and sample thickness, λ/h) was applied to successfully describe changes in the TCF values, and the TCF readings of the ZnO/Al SAW devices showed dramatic increases when the normalized wavelength λ/h was larger than 1. Using this design approach, we obtained the highest reported TCF value of −760 ppm/K for a SAW device made of ZnO thin film coated on Al foils (50 μm thick), thereby enabling low cost temperature sensor applications to be realized on flexible substrates.
The impact of the Deepwater Horizon blowout on historic shipwreck-associated sediment microbiomes in the northern Gulf of Mexico
Authors: Hamdan Leila J. , Salerno Jennifer L. , Reed Allen , Joye Samantha B. , Damour Melanie
Published: June 2018

More than 2,000 historic shipwrecks spanning 500 years of history, rest on the Gulf of Mexico seafloor. Shipwrecks serve as artificial reefs and hotspots of biodiversity by providing hard substrate, something rare in deep ocean regions. The Deepwater Horizon (DWH) spill discharged crude oil into the deep Gulf. Because of physical, biological, and chemical interactions, DWH oil was deposited on the seafloor, where historic shipwrecks are present. This study examined sediment microbiomes at seven historic shipwrecks. Steel-hulled, World War II-era shipwrecks and wooden-hulled, 19th century shipwrecks within and outside of the surface oiled area and subsurface plume were examined. Analysis of 16S rRNA sequence libraries, sediment radiocarbon age data, sedimentation rates, and hydrocarbons revealed that the German U-boat U-166 and the wooden-hulled sailing vessel known as the Mardi Gras Wreck, both in the Mississippi Canyon leasing area, were exposed to deposited oil during a rapid sedimentation event. Impacts to shipwreck microbiomes included a significant increase in Piscirickettsiaceae-related sequences in surface sediments, and reduced biodiversity relative to unimpacted sites. This study is the first to address the impact of the spill on shipwreck-associated microbiomes, and to explore how shipwrecks themselves influence microbiome diversity in the deep sea.
A virus plays a role in partially suppressing plant defenses induced by the viruliferous vectors
Authors: Li Pei , Liu Huan , Li Fei , Liao Xiaolan , Ali Shahbaz , Hou Maolin
Published: June 2018

Herbivorous attack induces plant defenses. There is evidence that some pests suppress these defenses by interfering with signaling pathways. We here report that infestation by the white-backed planthopper, Sogatella furcifera, induces defense responses in rice and infection of the southern rice black-streaked dwarf virus in the planthoppers partially suppresses the planthopper-induced plant defenses. Salicylic acid (SA) levels generally showed a temporal increase pattern while jasmonic acid (JA) levels generally exhibited a decrease pattern in the planthopper-infested plants, irrespective of virus infection status in the insects. The increase in SA was less while the decrease in JA was more in the viruliferous insect-infested plants than in the nonviruliferous insect-infested plants at both 48 and 72 h post infestation. The phytohormone levels corresponded to the patterns of relative expression levels of SA-marker genes (ICS1 and NPR1) and JA-marker gene (AOS2) in the plant treatments. Planthoppers performed better on the uninfested plants than on the previously infested plants and were of not significant increase in performance on the plants previously attacked by viruliferous planthoppers in comparison with the plants previously attacked by nonviruliferous insects. Our results indicate that the virus plays a role in partially suppressing the plant defenses induced by the planthopper. These findings provide a new perspective on plant–virus-vector interactions.
Effect of Different Gate Lengths on Polarization Coulomb Field Scattering Potential in AlGaN/GaN Heterostructure Field-Effect Transistors
Authors: Cui Peng , Mo Jianghui , Fu Chen , Lv Yuanjie , Liu Huan , Cheng Aijie , Luan Chongbiao , Zhou Yang , Dai Gang , Lin Zhaojun
Published: June 2018

The AlGaN/GaN heterostructure field-effect transistors with different gate lengths were fabricated. Based on the chosen of the Hamiltonian of the system and the additional polarization charges, two methods to calculate PCF scattering by the scattering theory were presented. By comparing the measured and calculated source-drain resistances, the effect of the different gate lengths on the PCF scattering potential was confirmed.
Hepatobiliary MRI: Signal intensity based assessment of liver function correlated to 13C-Methacetin breath test
Authors: Haimerl Michael , Probst Ute , Poelsterl Stefanie , Beyer Lukas , Fellner Claudia , Selgrad Michael , Hornung Matthias , Stroszczynski Christian , Wiggermann Philipp
Published: June 2018

Gadoxetic acid (Gd-EOB-DTPA) is a paramagnetic MRI contrast agent with raising popularity and has been used for evaluation of imaging-based liver function in recent years. In order to verify whether liver function as determined by real-time breath analysis using the intravenous administration of 13C-methacetin can be estimated quantitatively from Gd-EOB-DTPA-enhanced MRI using signal intensity (SI) values. 110 patients underwent Gd-EOB-DTPA-enhanced 3-T MRI and, for the evaluation of liver function, a 13C-methacetin breath test (13C-MBT). SI values from before (SIpre) and 20 min after (SIpost) contrast media injection were acquired by T1-weighted volume-interpolated breath-hold examination (VIBE) sequences with fat suppression. The relative enhancement (RE) between the plain and contrast-enhanced SI values was calculated and evaluated in a correlation analysis of 13C-MBT values to SIpost and RE to obtain a SI-based estimation of 13C-MBT values. The simple regression model showed a log-linear correlation of 13C-MBT values with SIpost and RE (p < 0.001). Stratified by 3 different categories of 13C-MBT readouts, there was a constant significant decrease in both SIpost (p ≤ 0.002) and RE (p ≤ 0.033) with increasing liver disease progression as assessed by the 13C-MBT. Liver function as determined using real-time 13C-methacetin breath analysis can be estimated quantitatively from Gd-EOB-DTPA-enhanced MRI using SI-based indices.
A bacterial metabolite ameliorates periodontal pathogen-induced gingival epithelial barrier disruption via GPR40 signaling
Authors: Yamada Miki , Takahashi Naoki , Matsuda Yumi , Sato Keisuke , Yokoji Mai , Sulijaya Benso , Maekawa Tomoki , Ushiki Tatsuo , Mikami Yoshikazu , Hayatsu Manabu , Mizutani Yusuke , Kishino Shigenobu , Ogawa Jun , Arita Makoto , Tabeta Koichi , Maeda Takeyasu , Yamazaki Kazuhisa
Published: June 2018

Several studies have demonstrated the remarkable properties of microbiota and their metabolites in the pathogenesis of several inflammatory diseases. 10-Hydroxy-cis-12-octadecenoic acid (HYA), a bioactive metabolite generated by probiotic microorganisms during the process of fatty acid metabolism, has been studied for its protective effects against epithelial barrier impairment in the intestines. Herein, we examined the effect of HYA on gingival epithelial barrier function and its possible application for the prevention and treatment of periodontal disease. We found that GPR40, a fatty acid receptor, was expressed on gingival epithelial cells; activation of GPR40 by HYA significantly inhibited barrier impairment induced by Porphyromonas gingivalis, a representative periodontopathic bacterium. The degradation of E-cadherin and beta-catenin, basic components of the epithelial barrier, was prevented in a GPR40-dependent manner in vitro. Oral inoculation of HYA in a mouse experimental periodontitis model suppressed the bacteria-induced degradation of E-cadherin and subsequent inflammatory cytokine production in the gingival tissue. Collectively, these results suggest that HYA exerts a protective function, through GPR40 signaling, against periodontopathic bacteria-induced gingival epithelial barrier impairment and contributes to the suppression of inflammatory responses in periodontal diseases.
The references level of cadmium intake for renal dysfunction in a Chinese population
Authors: Chen Xiao , Wang Zhongqiu , Zhu Guoying , Ding Xiaoqiang , Jin Taiyi
Published: June 2018

Recent several studies indicated that a more restrictive dietary intake guideline for cadmium should be made for sufficient health protection. In the present study, we showed the references level of food cadmium intake (FCd) and total cadmium intake (TCd) for renal dysfunction by using benchmark dose (BMD) approach. 342 subjects living in a control and a cadmium polluted area were included in this study. The FCd, TCd and cadmium in urine (UCd) and blood (BCd) were calculated or determined. Urinary β2Microglobulin (UBMG) was determined as indicator of renal function. The median FCd, TCd, UCd and BCd were 1.4 g, 1.4 g, 3.1 μg/g creatinine(cr) and 1.3 μg/L in control and 3.3 g, 3.6 g, 13.5 μg/g cr and 12.1 μg/L in polluted area. The 95% lower confidence bounds of BMD (BMDLs) of FCd for renal dysfunction were 1.36–1.55 g (BMR = 10%) and 0.88–1.11 g (BMR = 5%). The BMDLs of TCd were 1.29–1.46 g (BMR = 10%) and 0.73–0.95 g (BMR = 5%). FCd and TCd are valuable markers for the predication of renal dysfunction induced by cadmium. The BMDLs of FCd were close to previous report in Japan and the BMDLs of TCd were lower than the critical standard previously reported, in particular at BMR of 5% which can be interpreted as representing the influence of smoking.
Transcriptional control of intestinal cholesterol absorption, adipose energy expenditure and lipid handling by Sortilin
Authors: Hagita Sumihiko , Rogers Maximillian A. , Pham Tan , Wen Jennifer R. , Mlynarchik Andrew K. , Aikawa Masanori , Aikawa Elena
Published: June 2018

The sorting receptor Sortilin functions in the regulation of glucose and lipid metabolism. Dysfunctional lipid uptake, storage, and metabolism contribute to several major human diseases including atherosclerosis and obesity. Sortilin associates with cardiovascular disease; however, the role of Sortilin in adipose tissue and lipid metabolism remains unclear. Here we show that in the low-density lipoprotein receptor-deficient (Ldlr−/−) atherosclerosis model, Sortilin deficiency (Sort1−/−) in female mice suppresses Niemann-Pick type C1-Like 1 (Npc1l1) mRNA levels, reduces body and white adipose tissue weight, and improves brown adipose tissue function partially via transcriptional downregulation of Krüppel-like factor 4 and Liver X receptor. Female Ldlr−/−Sort1−/− mice on a high-fat/cholesterol diet had elevated plasma Fibroblast growth factor 21 and Adiponectin, an adipokine that when reduced is associated with obesity and cardiovascular disease-related factors. Additionally, Sort1 deficiency suppressed cholesterol absorption in both female mice ex vivo intestinal tissue and human colon Caco-2 cells in a similar manner to treatment with the NPC1L1 inhibitor ezetimibe. Together our findings support a novel role of Sortilin in energy regulation and lipid homeostasis in female mice, which may be a potential therapeutic target for obesity and cardiovascular disease.