bluuebunny/crossref_metadata_2025 huggingface dataset:
Optimization of Electrochemically Deposited Highly Doped ZnO Bilayers on Ga-Rich Chalcopyrite Selenide for Cost-Effective Photovoltaic Device Technology
Authors: Papadimitriou Dimitra , Roupakas Georgios , Roumeliotis Georgios , Vogt Patrick , Köhler Tristan
Published: November 2016

High quality polycrystalline bilayers of aluminium doped ZnO (Al:ZnO) were successively electrodeposited in the form of columnar structures preferentially oriented along the ( 10 1 ¯ 1 ) crystallographic direction from aqueous solution of zinc nitrate (Zn(NO3)2) at negative electrochemical potential of EC = (−0.8)–(−1.2) V and moderate temperature of 80 °C on gallium rich (30% Ga) chalcopyrite selenide Cu(In,Ga)Se2 (CIGS) with chemically deposited ZnSe buffer (ZnSe/Cu(In,Ga)Se2/Mo/glass). The aluminium doped ZnO layer properties have initially been probed by deposition of Al:ZnO/i-ZnO bilayers directly on Mo/glass substrates. The band-gap energy of the Al:ZnO/i-ZnO reference layers was found to vary from 3.2 to 3.7 eV by varying the AlCl3 solute dopant concentration from 1 to 20 mM. The electrical resistivity of indium-pellet contacted highly doped Al:ZnO sheet of In/Al:ZnO/i-ZnO/Mo/glass reference samples was of the order ρ ~10−5 Ω·cm; the respective carrier concentration of the order 1022 cm−3 is commensurate with that of sputtered Al:ZnO layers. For crystal quality optimization of the bilayers by maintenance of the volatile selenium content of the chalcopyrite, they were subjected to 2-step annealing under successive temperature raise and N2 flux regulation. The hydrostatic compressive strain due to Al3+ incorporation in the ZnO lattice of bilayers processed successively with 5 and 12 mM AlCl3 dopant was εh = −0.046 and the respective stress σh = −20 GPa. The surface reflectivity of maximum 5% over the scanned region of 180–900 nm and the (optical) band gap of Eg = 3.67 eV were indicative of the high optical quality of the electrochemically deposited (ECD) Al:ZnO bilayers.
Retrofitted Solar Domestic Hot Water Systems for Swedish Single-Family Houses—Evaluation of a Prototype and Life-Cycle Cost Analysis
Authors: Bernardo Luis , Davidsson Henrik , Andersson Erik
Published: November 2016

According to recent technology road maps, system cost reductions and development of standardised plug-and-function systems are some of the most important goals for solar heating technology development. Retrofitting hot water boilers in single-family houses when installing solar collectors has the potential to significantly reduce both material and installation costs. Previous studies have investigated such retrofitting, using theoretical simulations and laboratory tests, but no actual installations were made and tested in practice. This article describes the installation, measured performance and cost effectiveness of a retrofitting solution that converts existing domestic hot water heaters to a solar domestic hot water system. The measured performance is characterised by the monthly and annual solar fractions. The cost effectiveness is evaluated by a life-cycle cost analysis, comparing the retrofitted system to a conventional solar domestic hot water system and the case without any solar heating system. Measurements showed that approximately 50% of the 5000 kWh/year of domestic hot water consumption was saved by the retrofitted system in south Sweden. Such savings are in agreement with previous estimations and are comparable to the energy savings when using a conventional solar domestic hot water system. The life-cycle cost analysis showed that, according to the assumptions and given climate, the return on investment of the retrofitted system is approximately 17 years, while a conventional system does not reach profitability during its lifetime of 25 years.
Narrating Animal Trauma in Bulgakov and Tolstoy
Authors: Andrianova Anastassiya
Published: November 2016

Following the recent “animal turn” in literary studies, which has inspired scholars to revisit traditional human-centered interpretations of texts narrated by animals, this article focuses on the convergence of animal studies and trauma theory. It offers new animal-centered close readings of Tolstoy’s Strider and Bulgakov’s Heart of a Dog, paying attention to animal pain rather than seeing it, and the text as a whole, as an allegory of human society. Like many other authors of literary fiction featuring animal narrators, Tolstoy and Bulgakov employ a kind of empathic ventriloquism to narrate animal pain, an important project which, however, given the status of both the animal and trauma outside human language, and thus susceptible to being distorted by it, produces inauthentic discourse (animal-like, rather than animal narration); therefore, these authors get closest to animal pain, not through sophisticated narration, but through the use of ellipses and onomatopoeia. Ultimately, any narratological difficulty with animal focalization is minor compared to the ethical imperative of anti-speciesist animal-standpoint criticism, and the goal is to reconceive the status of animals in literature so as to change their ontological place in the world, urging that this critical work and animal rights advocacy be continued in the classroom.
Rainfall Simulator Experiments to Investigate Macropore Impacts on Hillslope Hydrological Response
Authors: Smit Yvonne , Van der Ploeg Martine , Teuling Adriaan
Published: November 2016

Understanding hillslope runoff response to intense rainfall is an important topic in hydrology, and is key to correct prediction of extreme stream flow, erosion and landslides. Although it is known that preferential flow processes activated by macropores are an important phenomena in understanding runoff processes inside a hillslope, hydrological models have generally not embraced the concept of an extra parameter that represents ‘macropores’ because of the complexity of the phenomenon. Therefore, it is relevant to investigate the influence of macropores on runoff processes in an experimental small artificial hillslope. Here, we report on a controlled experiment where we could isolate the influence of macropores without the need for assumptions regarding their characteristics. Two identical hillslopes were designed, of which one was filled with artificial macropores. Twelve artificial rainfall events were applied to the two hillslopes and results of drainage and soil moisture were investigated. After the experiments, it could be concluded that the influence of macropores on runoff processes was minimal. The S90 sand used for this research caused runoff to respond fast to rainfall, leading to little or no development of saturation near the macropores. In addition, soil moisture data showed a large amount of pendular water in the hillslopes, which implies that the soil has a low air entry value, and, in combination with the lack of vertical flow, could have caused the pressure difference between the matrix and the macropores to vanish sooner and result in equilibrium being reached in a relatively short time. Nevertheless, a better outline is given to determine a correct sand type for these types of experiments and, by using drainage recession analysis to investigate the influences of macropores on runoff, heterogeneity in rainfall intensity can be overcome. This study is a good point of reference to start future experiments from concerning macropores and hillslope hydrology.
Behavioral Response in the Immediate Aftermath of Shaking: Earthquakes in Christchurch and Wellington, New Zealand, and Hitachi, Japan
Authors: Jon Ihnji , Lindell Michael , Prater Carla , Huang Shih-Kai , Wu Hao-Che , Johnston David , Becker Julia , Shiroshita Hideyuki , Doyle Emma , Potter Sally , McClure John , Lambie Emily
Published: November 2016

This study examines people’s response actions in the first 30 min after shaking stopped following earthquakes in Christchurch and Wellington, New Zealand, and Hitachi, Japan. Data collected from 257 respondents in Christchurch, 332 respondents in Hitachi, and 204 respondents in Wellington revealed notable similarities in some response actions immediately after the shaking stopped. In all four events, people were most likely to contact family members and seek additional information about the situation. However, there were notable differences among events in the frequency of resuming previous activities. Actions taken in the first 30 min were weakly related to: demographic variables, earthquake experience, contextual variables, and actions taken during the shaking, but were significantly related to perceived shaking intensity, risk perception and affective responses to the shaking, and damage/infrastructure disruption. These results have important implications for future research and practice because they identify promising avenues for emergency managers to communicate seismic risks and appropriate responses to risk area populations.
Optical Coherence Tomography and Magnetic Resonance Imaging in Multiple Sclerosis and Neuromyelitis Optica Spectrum Disorder
Authors: Manogaran Praveena , Hanson James , Olbert Elisabeth , Egger Christine , Wicki Carla , Gerth-Kahlert Christina , Landau Klara , Schippling Sven
Published: November 2016

Irreversible disability in multiple sclerosis (MS) and neuromyelitis optica spectrum disorder (NMOSD) is largely attributed to neuronal and axonal degeneration, which, along with inflammation, is one of the major pathological hallmarks of these diseases. Optical coherence tomography (OCT) is a non-invasive imaging tool that has been used in MS, NMOSD, and other diseases to quantify damage to the retina, including the ganglion cells and their axons. The fact that these are the only unmyelinated axons within the central nervous system (CNS) renders the afferent visual pathway an ideal model for studying axonal and neuronal degeneration in neurodegenerative diseases. Structural magnetic resonance imaging (MRI) can be used to obtain anatomical information about the CNS and to quantify evolving pathology in MS and NMOSD, both globally and in specific regions of the visual pathway including the optic nerve, optic radiations and visual cortex. Therefore, correlations between brain or optic nerve abnormalities on MRI, and retinal pathology using OCT, may shed light on how damage to one part of the CNS can affect others. In addition, these imaging techniques can help identify important differences between MS and NMOSD such as disease-specific damage to the visual pathway, trans-synaptic degeneration, or pathological changes independent of the underlying disease process. This review focuses on the current knowledge of the role of the visual pathway using OCT and MRI in patients with MS and NMOSD. Emphasis is placed on studies that employ both MRI and OCT to investigate damage to the visual system in these diseases.
Berberine Suppresses Cyclin D1 Expression through Proteasomal Degradation in Human Hepatoma Cells
Authors: Wang Ning , Wang Xuanbin , Tan Hor-Yue , Li Sha , Tsang Chi , Tsao Sai-Wah , Feng Yibin
Published: November 2016

The aim of this study is to explore the underlying mechanism on berberine-induced Cyclin D1 degradation in human hepatic carcinoma. We observed that berberine could suppress both in vitro and in vivo expression of Cyclin D1 in hepatoma cells. Berberine exhibits dose- and time-dependent inhibition on Cyclin D1 expression in human hepatoma cell HepG2. Berberine increases the phosphorylation of Cyclin D1 at Thr286 site and potentiates Cyclin D1 nuclear export to cytoplasm for proteasomal degradation. In addition, berberine recruits the Skp, Cullin, F-box containing complex-β-Transducin Repeat Containing Protein (SCFβ-TrCP) complex to facilitate Cyclin D1 ubiquitin-proteasome dependent proteolysis. Knockdown of β-TrCP blocks Cyclin D1 turnover induced by berberine; blocking the protein degradation induced by berberine in HepG2 cells increases tumor cell resistance to berberine. Our results shed light on berberine′s potential as an anti-tumor agent for clinical cancer therapy.
Integrated Exposure-Based Therapy for Co-Occurring Post Traumatic Stress Disorder (PTSD) and Substance Dependence: Predictors of Change in PTSD Symptom Severity
Authors: Mills Katherine , Barrett Emma , Merz Sabine , Rosenfeld Julia , Ewer Philippa , Sannibale Claudia , Baker Amanda , Hopwood Sally , Back Sudie , Brady Kathleen , Teesson Maree
Published: November 2016

This paper examines factors associated with change in PTSD symptom severity among individuals randomised to receive an integrated exposure-based psychotherapy for PTSD and substance dependence–Concurrent Treatment of PTSD and Substance Use Disorders Using Prolonged Exposure (COPE). Outcomes examined include change in PTSD symptom severity as measured by the Clinician Administered PTSD Scale (CAPS), and the reliability and clinical significance of change in PTSD symptom severity. Factors examined include patient baseline characteristics, treatment characteristics, and events over follow-up. The mean difference in CAPS score was 38.24 (SE 4.81). Approximately half (49.1%) demonstrated a reliable and clinically significant improvement in PTSD symptom severity. No one was classified as having demonstrated clinically significant worsening of symptoms. Three independent predictors of reductions in PTSD symptom severity were identified: baseline PTSD symptom severity (β 0.77, SE 0.23, p = 0.001), number of traumas experienced prior to baseline (β −0.30, SE 0.15, p = 0.049), and number of sessions attended (β 2.05, SE 0.87, p = 0.024). The present study provides further evidence regarding the safety of the COPE treatment and factors associated with improvement in PTSD symptom severity. The identification of only a small number of predictors of the outcome points to the broad applicability of the COPE treatment to PTSD and substance use disorder (SUD) patients.
ZnO-Layered Double Hydroxide@Graphitic Carbon Nitride Composite for Consecutive Adsorption and Photodegradation of Dyes under UV and Visible Lights
Authors: Zhang Luhong , Li Li , Sun Xiaoming , Liu Peng , Yang Dongfang , Zhao Xiusong
Published: November 2016

In this work, a ZnO-layered double hydroxide@graphitic carbon nitride composite (ZnO-LDH@C3N4) was synthesized via co-precipitation method with solvothermal treatment. The structure and morphology of ZnO-LDH@C3N4 composite were characterized using X-ray diffraction (XRD), Fourier transform infrared spectroscopy (FT-IR), scanning electron microscopes/transmission electron microscopes (SEM/TEM), N2 adsorption/desorption, ultraviolet visible diffuse reflectance spectroscopy (UV-Vis-DRS), photoluminescence spectrometer (PL) and electrochemical impedance spectroscopy (EIS). The adsorption and photocatalytic properties of ZnO-LDH@C3N4 composite towards the organic dyes: Orange II sodium salt (OrgII, an anionic azo dye) and methylene blue (MB, a cationic azo dye) were investigated. Compared to ZnO-LDH and g-C3N4, the ZnO-LDH@C3N4 composite displayed an excellent performance in both adsorption and photocatalytic degradation of the organic dyes. Moreover, a combination of ZnO-LDH and g-C3N4 significantly improved the photocatalytic performance of ZnO-LDH and g-C3N4 under visible-light irradiation. The adsorption and photocatalytic mechanism were also investigated.
Separation of Peptides with Forward Osmosis Biomimetic Membranes
Authors: Bajraktari Niada , Madsen Henrik , Gruber Mathias , Truelsen Sigurd , Jensen Elzbieta , Jensen Henrik , Hélix-Nielsen Claus
Published: November 2016

Forward osmosis (FO) membranes have gained interest in several disciplines for the rejection and concentration of various molecules. One application area for FO membranes that is becoming increasingly popular is the use of the membranes to concentrate or dilute high value compound solutions such as pharmaceuticals. It is crucial in such settings to control the transport over the membrane to avoid losses of valuable compounds, but little is known about the rejection and transport mechanisms of larger biomolecules with often flexible conformations. In this study, transport of two chemically similar peptides with molecular weight (Mw) of 375 and 692 Da across a thin film composite Aquaporin Inside™ Membrane (AIM) FO membrane was investigated. Despite the relative large size, both peptides were able to permeate the dense active layer of the AIM membrane and the transport mechanism was determined to be diffusion-based. Interestingly, the membrane permeability increased 3.65 times for the 692 Da peptide (1.39 × 10−12 m2·s−1) compared to the 375 Da peptide (0.38 × 10−12 m2·s−1). This increase thus occurs for an 85% increase in Mw but only for a 34% increase in peptide radius of gyration (Rg) as determined from molecular dynamics (MD) simulations. This suggests that Rg is a strong influencing factor for membrane permeability. Thus, an increased Rg reflects the larger peptide chains ability to sample a larger conformational space when interacting with the nanostructured active layer increasing the likelihood for permeation.
Piper sarmentosum Effects on 11β-Hydroxysteroid Dehydrogenase Type 1 Enzyme in Serum and Bone in Rat Model of Glucocorticoid-Induced Osteoporosis
Authors: Mohamad Asri Siti , Mohd Ramli Elvy , Soelaiman Ima , Mat Noh Muhamad , Abdul Rashid Abdul , Suhaimi Farihah
Published: November 2016

Glucocorticoid-induced osteoporosis is one of the common causes of secondary osteoporosis. Piper sarmentosum (Ps) extract possesses antioxidant and anti-inflammatory activities. In this study, we determined the correlation between the effects of Ps leaf water extract with the regulation of 11β-hydroxysteroid dehydrogenase (HSD) type 1 enzyme activity in serum and bone of glucocorticoid-induced osteoporotic rats. Twenty-four Sprague-Dawley rats were grouped into following: G1: sham-operated group administered with intramuscular vehicle olive oil and vehicle normal saline orally; G2: adrenalectomized (adrx) control group given intramuscular dexamethasone (120 μg/kg/day) and vehicle normal saline orally; G3: adrx group given intramuscular dexamethasone (120 μg/kg/day) and water extract of Piper sarmentosum (125 mg/kg/day) orally. After two months, the femur and serum were taken for ELISA analysis. Results showed that Ps leaf water extract significantly reduced the femur corticosterone concentration (p < 0.05). This suggests that Ps leaf water extract was able to prevent bone loss due to long-term glucocorticoid therapy by acting locally on the bone cells by increasing the dehydrogenase action of 11β-HSD type 1. Thus, Ps may have the potential to be used as an alternative medicine against osteoporosis and osteoporotic fracture in patients on long-term glucocorticoid treatment.
Special Issue: “Organic Reactions in Green Solvents”
Authors: Sperry Jonathan , García-Álvarez Joaquín
Published: November 2016

To overcome the well-established drawbacks of conventional organic solvents (toxicity, non-biodegradability, flammability, accumulation in the atmosphere) remarkable research efforts have been recently devoted to the replacement of traditional organic reaction media by the so-called Green Solvents. In this sense, the choice of a safe, non-toxic, biorenewable and cheap reaction media is a crucial goal in organic synthesis. Thus, this Special Issue on “Organic Reactions in Green Solvents” has been aimed to showcase a series of stimulating contributions from international experts within different sub-areas of organic synthesis in Green Solvents (ranging from metal- to organo-catalyzed organic reactions).
One Pot Single Step Synthesis and Biological Evaluation of Some Novel Bis(1,3,4-thiadiazole) Derivatives as Potential Cytotoxic Agents
Authors: Gomha Sobhi , Kheder Nabila , Abdelhamid Abdou , Mabkhot Yahia
Published: November 2016

A novel series of bis(1,3,4-thiadiazole) derivatives were synthesized in one step methodology with good yields by condensation reaction between bis-hydrazonoyl chloride 1 and various reagents. The structures of the prepared compounds were confirmed by spectral data (IR, NMR, and MS), and elemental analysis. The anticancer activity against human breast carcinoma (MCF-7) cancer cell lines was evaluated in MTT assay. The results revealed that the bis-thiadiazole derivatives 5c,d, 7b,c and 9c had higher antitumor activity than the standard drug Imatinib.
The Reciprocal Principle of Selectand-Selector-Systems in Supramolecular Chromatography †
Authors: Schurig Volker
Published: November 2016

In selective chromatography and electromigration methods, supramolecular recognition of selectands and selectors is due to the fast and reversible formation of association complexes governed by thermodynamics. Whereas the selectand molecules to be separated are always present in the mobile phase, the selector employed for the separation of the selectands is either part of the stationary phase or is added to the mobile phase. By the reciprocal principle, the roles of selector and selectand can be reversed. In this contribution in honor of Professor Stig Allenmark, the evolution of the reciprocal principle in chromatography is reviewed and its advantages and limitations are outlined. Various reciprocal scenarios, including library approaches, are discussed in efforts to optimize selectivity in separation science.
Diphenylcarbene Protected by Four ortho-Iodine Groups: An Unusually Persistent Triplet Carbene
Authors: Hirai Katsuyuki , Bessho Kana , Tsujita Kosaku , Kitagawa Toshikazu
Published: November 2016

Diphenyldiazomethane with four iodine groups at the ortho positions and two tert-butyl groups at the para positions, i.e., bis(4-tert-butyl-2,6-diiodophenyl)diazomethane (1a-N2), was synthesized as a sterically hindered triplet carbene precursor. Irradiation of 1a-N2 in solution effectively generated the corresponding triplet diphenylcarbene 31a, which was characterized by UV-vis spectroscopy at low temperature, along with laser flash photolysis techniques at room temperature. The UV-vis spectrum of 31a was obtained by irradiating 1a-N2 in a 2-methyltetrahydrofuran matrix at 77 K. The ESR spectrum showed no triplet carbene signals, while a radical species was observed at the anticipated temperature of the decomposition of triplet carbene 31a. Transient absorption bands ascribable to 31a were observed by laser flash photolysis of 1a-N2 in a degassed benzene solution and decayed very slowly with a second-order rate constant (2k/εl) of 5.5 × 10−3·s−1. Steady-state irradiation of 1a-N2 in degassed benzene afforded 9,10-diarylphenanthrene derivative 2a in a 31% yield. Triplet carbene 31a was also trapped by either oxygen (kO2 = 6.5 × 105 M−1·s−1) or 1,4-cyclohexadiene (kCHD = 1.5 M−1·s−1) to afford the corresponding ketone 1a-O or the diarylmethane 1a-H2. The carbene was shown to be much less reactive than the triplet diphenylcarbene that is protected by two ortho-iodo and two ortho-bromo groups, 31b.
Towards the Full Realization of 2DE Power
Authors: Naryzhny Stanislav
Published: November 2016

Here, approaches that allow disclosure of the information hidden inside and outside of two-dimensional gel electrophoresis (2DE) are described. Experimental identification methods, such as mass spectrometry of high resolution and sensitivity (MALDI-TOF MS and ESI LC-MS/MS) and immunodetection (Western and Far-Western) in combination with bioinformatics (collection of all information about proteoforms), move 2DE to the next level of power. The integration of these technologies will promote 2DE as a powerful methodology of proteomics technology.
Variability of Particle Size Distributions in the Bohai Sea and the Yellow Sea
Authors: Qiu Zhongfeng , Sun Deyong , Hu Chuanmin , Wang Shengqiang , Zheng Lufei , Huan Yu , Peng Tian
Published: November 2016

Particle size distribution (PSD) is an important parameter that is relevant to many aspects of marine ecosystems, such as phytoplankton functional types, optical absorption and scattering from particulates, sediment fluxes, and carbon export. However, only a handful of studies have documented the PSD variability in different regions. Here, we investigate the PSD properties and variability in two shallow and semi-enclosed seas (the Bohai Sea (BS) and Yellow Sea (YS)), using in situ laser diffraction measurements (LISST-100X Type C) and other measurements at 79 stations in November 2013. The results show large variability in particle concentrations (in both volume and number concentrations), with volume concentrations varying by 57-fold. The median particle diameter (Dv50) from each of the water samples also covers a large range (22.4–307.0 μm) and has an irregular statistical distribution, indicating complexity in the PSD. The PSD slopes (2.7–4.5), estimated from a power-law model, cover nearly the entire range reported previously for natural waters. Small mineral particles (with large PSD slopes) are characteristic of near-shore waters prone to sediment resuspension by winds and tides, while large biological particles (with small PSD slopes) dominate the total suspended particulates for waters away from the coast. For the BS and YS, this study provides the first report on the properties and spatial variability of the PSD, which may influence the optical properties of the ocean surface and remote sensing algorithms that are based on estimations of particle concentrations and sizes.
Laboratory Performance of Five Selected Soil Moisture Sensors Applying Factory and Own Calibration Equations for Two Soil Media of Different Bulk Density and Salinity Levels
Authors: Matula Svatopluk , Báťková Kamila , Legese Wossenu
Published: November 2016

Non-destructive soil water content determination is a fundamental component for many agricultural and environmental applications. The accuracy and costs of the sensors define the measurement scheme and the ability to fit the natural heterogeneous conditions. The aim of this study was to evaluate five commercially available and relatively cheap sensors usually grouped with impedance and FDR sensors. ThetaProbe ML2x (impedance) and ECH2O EC-10, ECH2O EC-20, ECH2O EC-5, and ECH2O TE (all FDR) were tested on silica sand and loess of defined characteristics under controlled laboratory conditions. The calibrations were carried out in nine consecutive soil water contents from dry to saturated conditions (pure water and saline water). The gravimetric method was used as a reference method for the statistical evaluation (ANOVA with significance level 0.05). Generally, the results showed that our own calibrations led to more accurate soil moisture estimates. Variance component analysis arranged the factors contributing to the total variation as follows: calibration (contributed 42%), sensor type (contributed 29%), material (contributed 18%), and dry bulk density (contributed 11%). All the tested sensors performed very well within the whole range of water content, especially the sensors ECH2O EC-5 and ECH2O TE, which also performed surprisingly well in saline conditions.
A New Multi-Sensor Fusion Scheme to Improve the Accuracy of Knee Flexion Kinematics for Functional Rehabilitation Movements
Authors: Tannous Halim , Istrate Dan , Benlarbi-Delai Aziz , Sarrazin Julien , Gamet Didier , Ho Ba Tho Marie , Dao Tien
Published: November 2016

Exergames have been proposed as a potential tool to improve the current practice of musculoskeletal rehabilitation. Inertial or optical motion capture sensors are commonly used to track the subject’s movements. However, the use of these motion capture tools suffers from the lack of accuracy in estimating joint angles, which could lead to wrong data interpretation. In this study, we proposed a real time quaternion-based fusion scheme, based on the extended Kalman filter, between inertial and visual motion capture sensors, to improve the estimation accuracy of joint angles. The fusion outcome was compared to angles measured using a goniometer. The fusion output shows a better estimation, when compared to inertial measurement units and Kinect outputs. We noted a smaller error (3.96°) compared to the one obtained using inertial sensors (5.04°). The proposed multi-sensor fusion system is therefore accurate enough to be applied, in future works, to our serious game for musculoskeletal rehabilitation.
Optimized Detection of Plasmodium falciparum Topoisomerase I Enzyme Activity in a Complex Biological Sample by the Use of Molecular Beacons
Authors: Givskov Asger , Kristoffersen Emil , Vandsø Kamilla , Ho Yi-Ping , Stougaard Magnus , Knudsen Birgitta
Published: November 2016

The so-called Rolling Circle Amplification allows for amplification of circular DNA structures in a manner that can be detected in real-time using nucleotide-based molecular beacons that unfold upon recognition of the DNA product, which is being produced during the amplification process. The unfolding of the molecular beacons results in a fluorescence increase as the Rolling Circle Amplification proceeds. This can be measured in a fluorometer. In the current study, we have investigated the possibility of using two different molecular beacons to detect two distinct Rolling Circle Amplification reactions proceeding simultaneously and in the same reaction tube by measurement of fluorescence over time. We demonstrate the application of this fluorometric readout method, for automated and specific detection of the activity of the type IB topoisomerase from the malaria parasite Plasmodium falciparum in the presence of human cell extract containing the related topoisomerase I from humans. The obtained results point towards a future use of the presented assay setup for malaria diagnostics or drug screening purposes. In longer terms the method may be applied more broadly for real-time sensing of various Rolling Circle Amplification reactions.
Investigating the Utility of Oblique Tree-Based Ensembles for the Classification of Hyperspectral Data
Authors: Poona Nitesh , Van Niekerk Adriaan , Ismail Riyad
Published: November 2016

Ensemble classifiers are being widely used for the classification of spectroscopic data. In this regard, the random forest (RF) ensemble has been successfully applied in an array of applications, and has proven to be robust in handling high dimensional data. More recently, several variants of the traditional RF algorithm including rotation forest (rotF) and oblique random forest (oRF) have been applied to classifying high dimensional data. In this study we compare the traditional RF, rotF, and oRF (using three different splitting rules, i.e., ridge regression, partial least squares, and support vector machine) for the classification of healthy and infected Pinus radiata seedlings using high dimensional spectroscopic data. We further test the robustness of these five ensemble classifiers to reduced spectral resolution by spectral resampling (binning) of the original spectral bands. The results showed that the three oblique random forest ensembles outperformed both the traditional RF and rotF ensembles. Additionally, the rotF ensemble proved to be the least robust of the five ensembles tested. Spectral resampling of the original bands provided mixed results. Nevertheless, the results demonstrate that using spectral resampled bands is a promising approach to classifying asymptomatic stress in Pinus radiata seedlings.
Wastewater Biosolid Composting Optimization Based on UV-VNIR Spectroscopy Monitoring
Authors: Temporal-Lara Beatriz , Melendez-Pastor Ignacio , Gómez Ignacio , Navarro-Pedreño Jose
Published: November 2016

Conventional wastewater treatment generates large amounts of organic matter–rich sludge that requires adequate treatment to avoid public health and environmental problems. The mixture of wastewater sludge and some bulking agents produces a biosolid to be composted at adequate composting facilities. The composting process is chemically and microbiologically complex and requires an adequate aeration of the biosolid (e.g., with a turner machine) for proper maturation of the compost. Adequate (near) real-time monitoring of the compost maturity process is highly difficult and the operation of composting facilities is not as automatized as other industrial processes. Spectroscopic analysis of compost samples has been successfully employed for compost maturity assessment but the preparation of the solid compost samples is difficult and time-consuming. This manuscript presents a methodology based on a combination of a less time-consuming compost sample preparation and ultraviolet, visible and short-wave near-infrared spectroscopy. Spectroscopic measurements were performed with liquid compost extract instead of solid compost samples. Partial least square (PLS) models were developed to quantify chemical fractions commonly employed for compost maturity assessment. Effective regression models were obtained for total organic matter (residual predictive deviation—RPD = 2.68), humification ratio (RPD = 2.23), total exchangeable carbon (RPD = 2.07) and total organic carbon (RPD = 1.66) with a modular and cost-effective visible and near infrared (VNIR) spectroradiometer. This combination of a less time-consuming compost sample preparation with a versatile sensor system provides an easy-to-implement, efficient and cost-effective protocol for compost maturity assessment and near-real-time monitoring.
Does Firms’ Innovation Promote Export Growth Sustainably?—Evidence from Chinese Manufacturing Firms
Authors: Hao Liangfeng , Qiu Bin , Cervantes Lisette
Published: November 2016

Recent theoretical analysis and empirical studies have emphasized that firms’ innovation could significantly improve export growth. However, the positive effect of innovation on exports is likely to change due to unstable domestic offsetting for innovation and increasing worldwide competition for trade. This study aims to explore the dynamic link between them. We first develop a theoretical model between innovation and export growth based on the theory of heterogeneity. Export growth is measured through the dimensions of extensive margin and intensive margin so as to better investigate the effect of innovation on export performance. The propositions of mechanism analysis reveal that the effect of innovation on exports is non-linear rather than sustainable. An empirical study is followed to test the propositions by using data from a representative panel of Chinese manufacturing firms. Consistent with the theoretical predictions, the results show an inverted U-shaped relationship between innovation and extensive margin and a U-shaped relationship between innovation and intensive margin. The non-linear relations are verified by a threshold effect test. Further study shows less innovation and more firms on the left side of the relation curves. The distribution suggests irregular innovation ability among the exporters. Moreover, the role of innovation is more important for export growth and the corresponding threshold is higher in terms of high technological sectors. The contribution of this study is to introduce a comprehensive framework to investigate the dynamic effect of innovation on export growth, serving as a modest spur to induce the following studies to explore the sustainability of innovation effect.
Invariant Subspaces of the Two-Dimensional Nonlinear Evolution Equations
Authors: Zhu Chunrong , Qu Changzheng
Published: November 2016

In this paper, we develop the symmetry-related methods to study invariant subspaces of the two-dimensional nonlinear differential operators. The conditional Lie–Bäcklund symmetry and Lie point symmetry methods are used to construct invariant subspaces of two-dimensional differential operators. We first apply the multiple conditional Lie–Bäcklund symmetries to derive invariant subspaces of the two-dimensional operators. As an application, the invariant subspaces for a class of two-dimensional nonlinear quadratic operators are provided. Furthermore, the invariant subspace method in one-dimensional space combined with the Lie symmetry reduction method and the change of variables is used to obtain invariant subspaces of the two-dimensional nonlinear operators.
The E3 Ubiquitin Ligase TMEM129 Is a Tri-Spanning Transmembrane Protein
Authors: Van de Weijer Michael , Van Muijlwijk Guus , Visser Linda , Costa Ana , Wiertz Emmanuel , Lebbink Robert
Published: November 2016

Misfolded proteins from the endoplasmic reticulum (ER) are transported back into the cytosol for degradation via the ubiquitin-proteasome system. The human cytomegalovirus protein US11 hijacks this ER-associated protein degradation (ERAD) pathway to downregulate human leukocyte antigen (HLA) class I molecules in virus-infected cells, thereby evading elimination by cytotoxic T-lymphocytes. Recently, we identified the E3 ubiquitin ligase transmembrane protein 129 (TMEM129) as a key player in this process, where interference with TMEM129 activity in human cells completely abrogates US11-mediated class I degradation. Here, we set out to further characterize TMEM129. We show that TMEM129 is a non-glycosylated protein containing a non-cleaved signal anchor sequence. By glycosylation scanning mutagenesis, we show that TMEM129 is a tri-spanning ER-membrane protein that adopts an Nexo–Ccyto orientation. This insertion in the ER membrane positions the C-terminal really interesting new gene (RING) domain of TMEM129 in the cytosol, making it available to catalyze ubiquitination reactions that are required for cytosolic degradation of secretory proteins.
MILKY WAY KINEMATICS. II. A UNIFORM INNER GALAXY H i TERMINAL VELOCITY CURVE
Authors: McClure-Griffiths N. M. , Dickey John M.
Published: November 2016

Using atomic hydrogen (H i) data from the VLA Galactic Plane Survey, we measure the H i terminal velocity as a function of longitude for the first quadrant of the Milky Way. We use these data, together with our previous work on the fourth Galactic quadrant, to produce a densely sampled, uniformly measured, rotation curve of the northern and southern Milky Way between

. We determine a new joint rotation curve fit for the first and fourth quadrants, which is consistent with the fit we published in McClure-Griffiths & Dickey and can be used for estimating kinematic distances interior to the solar circle. Structure in the rotation curves is now exquisitely well defined, showing significant velocity structure on lengths of ∼200 pc, which is much greater than the spatial resolution of the rotation curve. Furthermore, the shape of the rotation curves for the first and fourth quadrants, even after subtraction of a circular rotation fit shows a surprising degree of correlation with a roughly sinusoidal pattern between

kpc.
THE CIRCUMGALACTIC MEDIUM OF SUBMILLIMETER GALAXIES. I. FIRST RESULTS FROM A RADIO-IDENTIFIED SAMPLE
Authors: Fu Hai , Hennawi J. F. , Prochaska J. X. , Mutel R. , Casey C. , Cooray A. , Kereš D. , Zhang Z.-Y. , Clements D. , Isbell J. , Lang C. , McGinnis D. , Michałowski M. J. , Mooley K. , Perley D. , Stockton A. , Thompson D.
Published: November 2016

We present the first results from an ongoing survey to characterize the circumgalactic medium (CGM) of massive high-redshift galaxies detected as submillimeter galaxies (SMGs). We constructed a parent sample of 163 SMG–QSO pairs with separations less than ∼36″ by cross-matching far-infrared-selected galaxies from Herschel with spectroscopically confirmed QSOs. The Herschel sources were selected to match the properties of the SMGs. We determined the sub-arcsecond positions of six Herschel sources with the Very Large Array and obtained secure redshift identification for three of those with near-infrared spectroscopy. The QSO sightlines probe transverse proper distances of 112, 157, and 198 kpc at foreground redshifts of 2.043, 2.515, and 2.184, respectively, which are comparable to the virial radius of the ∼1013
M
⊙ halos expected to host SMGs. High-quality absorption-line spectroscopy of the QSOs reveals systematically strong H i Lyα absorption around all three SMGs, with rest-frame equivalent widths of ∼2–3 Å. However, none of the three absorbers exhibit compelling evidence for optically thick H i gas or metal absorption, in contrast to the dominance of strong neutral absorbers in the CGM of luminous z ∼ 2 QSOs. The low covering factor of optically thick H i gas around SMGs tentatively indicates that SMGs may not have as prominent cool gas reservoirs in their halos as the coeval QSOs and that they may inhabit less massive halos than previously thought.
THE K2 M67 STUDY: AN EVOLVED BLUE STRAGGLER IN M67 FROM K2 MISSION ASTEROSEISMOLOGY*
Authors: Leiner Emily , Mathieu Robert D. , Stello Dennis , Vanderburg Andrew , Sandquist Eric
Published: November 2016

Yellow straggler stars (YSSs) fall above the subgiant branch in optical color–magnitude diagrams (CMDs), between the blue stragglers and the red giants. YSSs may represent a population of evolved blue stragglers, but none have the direct and precise mass and radius measurements needed to determine their evolutionary states and formation histories. Here we report the first asteroseismic mass and radius measurements of such a star, the yellow straggler S1237 in the open cluster M67. We apply asteroseismic scaling relations to a frequency analysis of the Kepler
K2 light curve and find a mass of 2.9 ± 0.2 M
⊙ and a radius of 9.2 ± 0.2 R
⊙. This is more than twice the mass of the main-sequence turnoff in M67, suggesting that S1237 is indeed an evolved blue straggler. S1237 is the primary in a spectroscopic binary. We update the binary orbital solution and use spectral energy distribution fitting to constrain the CMD location of the secondary star. We find that the secondary is likely an upper main-sequence star near the turnoff, but a slightly hotter blue straggler companion is also possible. We then compare the asteroseismic mass of the primary to its mass from CMD fitting, finding that the photometry implies a mass and radius more than 2σ below the asteroseismic measurement. Finally, we consider formation mechanisms for this star and suggest that S1237 may have formed from dynamical encounters resulting in stellar collisions or a binary merger.
THE BRAKING INDEX OF A RADIO-QUIET GAMMA-RAY PULSAR
Authors: Clark C. J. , Pletsch H. J. , Wu J. , Guillemot L. , Camilo F. , Johnson T. J. , Kerr M. , Allen B. , Aulbert C. , Beer C. , Bock O. , Cuéllar A. , Eggenstein H. B. , Fehrmann H. , Kramer M. , Machenschalk B. , Nieder L.
Published: November 2016

We report the discovery and timing measurements of PSR J1208−6238, a young and highly magnetized gamma-ray pulsar, with a spin period of 440 ms. The pulsar was discovered in gamma-ray photon data from the Fermi Large Area Telescope (LAT) during a blind-search survey of unidentified LAT sources, running on the distributed volunteer computing system Einstein@Home. No radio pulsations were detected in dedicated follow-up searches with the Parkes radio telescope, with a flux density upper limit at 1369 MHz of 30 μJy. By timing this pulsar’s gamma-ray pulsations, we measure its braking index over five years of LAT observations to be n = 2.598 ± 0.001 ± 0.1, where the first uncertainty is statistical and the second estimates the bias due to timing noise. Assuming its braking index has been similar since birth, the pulsar has an estimated age of around 2700 years, making it the youngest pulsar to be found in a blind search of gamma-ray data and the youngest known radio-quiet gamma-ray pulsar. Despite its young age, the pulsar is not associated with any known supernova remnant or pulsar wind nebula. The pulsar’s inferred dipolar surface magnetic field strength is 3.8 × 1013 G, almost 90% of the quantum-critical level. We investigate some potential physical causes of the braking index deviating from the simple dipole model but find that LAT data covering a longer time interval will be necessary to distinguish between these.
Daclatasvir plus Sofosbuvir, with or without Ribavirin, in Real-World Patients with HIV–HCV Coinfection and Advanced Liver Disease
Authors: Rockstroh Jürgen K , Ingiliz Patrick , Petersen Jörg , Peck-Radosavljevic Markus , Welzel Tania M , Van der Valk Marc , Zhao Yue , Jimenez-Exposito Maria Jesus , Zeuzem Stefan
Published: November 2016

Background

HIV–HCV-coinfected patients respond just as well to modern direct-acting antiviral HCV therapy as HCV-monoinfected patients. However, clinical data for all-oral HCV treatments are sparse in HIV–HCV-coinfected patients with an advanced stage of liver cirrhosis.

Methods

A subanalysis of efficacy and safety for a daclatasvir (DCV) and sofosbuvir (SOF) regimen, with or without ribavirin (RBV), was undertaken in HIV–HCV-coinfected patients with advanced liver disease and no other treatment options enrolled into a European DCV compassionate use programme.

Results

Fifty five HIV–HCV (mostly genotypes 1, 3, 4) coinfected patients were treated with DCV+SOF with ( n=16) or without RBV ( n=39), mostly for 24 weeks. Patients were predominantly (95%) cirrhotic (50% were Child–Pugh class B or C) and were receiving a wide range of antiretrovirals; 40% were injection drug users and 25% were receiving oral opioid substitution. Sustained virological response at post-treatment week 12 (SVR12) by modified intention-to-treat analysis ( n=52) was 92% overall (95% CI 81.5, 97.9), and was similar with (94% [95% CI 69.8, 99.8]) or without RBV (92% [95% CI 77.5, 98.2]). Only one patient relapsed (Child–Pugh class B). The overall SVR12 rate after excluding non-virologi-cal failures ( n=49) was 98% (95% CI 89.1, 99.9). Four patients discontinued treatment for adverse events and one died during treatment (not treatment-related). No patient lost opioid maintenance or required a change of antiretrovirals due to drug–drug interactions.

Conclusions

DCV+SOF, with or without RBV, showed high SVR12 rates and was well tolerated in this real-world cohort of HIV–HCV-coinfected patients with very advanced liver disease. ClinicalTrials.gov ID NCT02097966 (Study AI444-237).
Metabarcoding of marine nematodes – evaluation of similarity scores used in alignment-based taxonomy assignment approach
Authors: Holovachov Oleksandr
Published: November 2016

The diversity of organisms is being commonly accessed using metabarcoding of environmental samples. Reliable identification of barcodes is one of the critical steps in the process and several taxonomy assignment methods were proposed to accomplish this task, including alignment-based approach that uses Basic Local Alignment Search Tool (BLAST) algorithm. This publication evaluates the variability of 5' end of 18S rRNA barcoding region as expressed by similarity scores (alignment score and identity score) produced by BLAST, and its impact on barcode identification to family-level taxonomic categories.

In alignment-based taxonomy assignment approach, reliable identification of anonymous OTUs to supraspecific taxa depends on the correct application of similarity thresholds. Since various taxa show different level of genetic variation, practical application of alignment-based approach requires the determination and use of taxon-specific similarity thresholds.
Urban climate and heat stress: how likely is the implementation of adaptation measures in mid-latitude cities? The case of façade greening analyzed with Bayesian networks
Authors: Sprondel Nora , Donner Julie , Mahlkow Nicole , Köppel Johann
Published: November 2016

Urban heat is a challenge for mid-latitude cities possibly aggravated by global climate change making it necessary to adapt the urban fabric. Façade greening has been identified as an important measure to adjust the building stock and new buildings to adverse climatic impacts. Yet, little is known on factors that influence implementation probabilities for adaptation measures. Therefore, we tried to figure out the driving forces and barriers for implementation of façade greening applying the methodology of Bayesian networks. The article presents the Bayesian network as an analytical system to examine the probability for the implementation of adaptation measures by including expert opinions.

The results show that experts in Berlin estimate the likelihood of an implementation of façade greening under current conditions at 2 %. The article also examines further supportive factors that exist to raise this comparatively low value. A scenario including financial incentives from a backyard greening program raises the chances to 14 %. However, BN results confirm that it depends on the factor of “willingness” of involved actors and the right combination of supportive factors, as there are no regulations to fix the implementation of a façade greening legally.