bluuebunny/crossref_metadata_2025 huggingface dataset:
Relationships between the surface concentration of particulate organic carbon and optical properties in the eastern South Pacific and eastern Atlantic Oceans
Authors: Stramski D. , Reynolds R. A. , Babin M. , Kaczmarek S. , Lewis M. R. , Röttgers R. , Sciandra A. , Stramska M. , Twardowski M. S. , Franz B. A. , Claustre H.
Published: April 2010

Abstract. We have examined several approaches for estimating the surface concentration of particulate organic carbon, POC, from optical measurements of spectral remote-sensing reflectance, Rrs(λ), using field data collected in tropical and subtropical waters of the eastern South Pacific and eastern Atlantic Oceans. These approaches include a direct empirical relationship between POC and the blue-to-green band ratio of reflectance, Rrs(λB)/Rrs(555), and two-step algorithms that consist of relationships linking reflectance to an inherent optical property IOP (beam attenuation or backscattering coefficient) and POC to the IOP. We considered two-step empirical algorithms that exclusively include pairs of empirical relationships and two-step hybrid algorithms that consist of semianalytical models and empirical relationships. The surface POC in our data set ranges from about 10 mg m−3 within the South Pacific Subtropical Gyre to 270 mg m−3 in the Chilean upwelling area, and ancillary data suggest a considerable variation in the characteristics of particulate assemblages in the investigated waters. The POC algorithm based on the direct relationship between POC and Rrs(λB)/Rrs(555) promises reasonably good performance in the vast areas of the open ocean covering different provinces from hyperoligotrophic and oligotrophic waters within subtropical gyres to eutrophic coastal upwelling regimes characteristic of eastern ocean boundaries. The best error statistics were found for power function fits to the data of POC vs. Rrs(443)/Rrs(555) and POC vs. Rrs(490)/Rrs(555). For our data set that includes over 50 data pairs, these relationships are characterized by the mean normalized bias of about 2% and the normalized root mean square error of about 20%. We recommend that these algorithms be implemented for routine processing of ocean color satellite data to produce maps of surface POC with the status of an evaluation data product for continued work on algorithm development and refinements. The two-step algorithms also deserve further attention because they can utilize various models for estimating IOPs from reflectance, offer advantages for developing an understanding of bio-optical variability underlying the algorithms, and provide flexibility for regional or seasonal parameterizations of the algorithms.
Soil biogenic emissions of nitric oxide from a semi-arid savanna in South Africa
Authors: Feig G. T. , Mamtimin B. , Meixner F. X.
Published: April 2010

Abstract. Soils of arid and semi-arid ecosystems are important biogenic sources of atmospheric nitric oxide (NO), however, there is still a shortage of measurements from these systems. Here we present the results of a laboratory study of the biogenic emission of NO from four different landscape positions of the Kruger National Park (KNP), a large conservation area in a semi-arid region of South Africa. Results show that the highest net potential NO fluxes come from the low lying (footslope) landscape regions, which have the largest nitrogen stocks and highest rates of nitrogen input into the soil. Net potential NO fluxes from midslope and crest regions were considerably lower. The maximum release of NO occurred at fairly low soil moisture contents of 10%–20% water filled pore space. Using soil moisture and temperature data obtained in situ at the Kruger National Park flux tower site, net potential NO fluxes obtained in the laboratory were converted to field fluxes for each of the four landscape positions for the period 2003 to 2005. The highest field NO flux is from footslope positions, during each of these years and emissions ranged from 1.5–8.5 kg ha a (in terms of mass of nitrogen). Remote sensing and Geographic Information Systems techniques were used to up-scale field NO fluxes on a regional basis indicating that the highest emissions occurred from the midslope positions, due to their large geographical extent in the considered research area. Emissions for the KNP Skukuza land type (56 000 ha) ranged from 20×103 kg in 2004 to 34×103 kg in 2003. The importance of landscape characteristics in the determination of regional biogenic NO soil emission is emphasized.
Nutrient limitation of primary productivity in the Southeast Pacific (BIOSOPE cruise)
Authors: Bonnet S. , Guieu C. , Bruyant F. , Prášil O. , Van Wambeke F. , Raimbault P. , Moutin T. , Grob C. , Gorbunov M. Y. , Zehr J. P. , Masquelier S. M. , Garczarek L. , Claustre H.
Published: April 2010

Abstract. Iron is an essential nutrient involved in a variety of biological processes in the ocean, including photosynthesis, respiration and dinitrogen fixation. Atmospheric deposition of aerosols is recognized as the main source of iron for the surface ocean. In high nutrient, low chlorophyll areas, it is now clearly established that iron limits phytoplankton productivity but its biogeochemical role in low nutrient, low chlorophyll environments has been poorly studied. We investigated this question in the unexplored southeast Pacific, arguably the most oligotrophic area of the global ocean. Situated far from any continental aerosol source, the atmospheric iron flux to this province is amongst the lowest of the world ocean. Here we report that, despite low dissolved iron concentrations (~0.1 nmol l−1) across the whole gyre (3 stations located in the center and at the western and the eastern edges), primary productivity are only limited by iron availability at the border of the gyre, but not in the center. The seasonal stability of the gyre has apparently allowed for the development of populations acclimated to these extreme oligotrophic conditions. Moreover, despite clear evidence of nitrogen limitation in the central gyre, we were unable to measure dinitrogen fixation in our experiments, even after iron and/or phosphate additions, and cyanobacterial nif H gene abundances were extremely low compared to the North Pacific Gyre. The South Pacific gyre is therefore unique with respect to the physiological status of its phytoplankton populations.
A step-by-step procedure for pH model construction in aquatic systems
Authors: Hofmann A. F. , Meysman F. J. R. , Soetaert K. , Middelburg J. J.
Published: April 2010

Abstract. We present, by means of a simple example, a comprehensive step-by-step procedure to consistently derive a pH model of aquatic systems. As pH modelling is inherently complex, we make every step of the model generation process explicit, thus ensuring conceptual, mathematical, and chemical correctness. Summed quantities, such as total inorganic carbon and total alkalinity, and the influences of modeled processes on them are consistently derived. The different time scales of processes involved in the pH problem (biological and physical reactions: days; aquatic chemical reactions: fractions of seconds) give rise to a stiff equation system. Subsequent reformulations of the system reduce its stiffness, accepting higher non-linear algebraic complexity. The model is reformulated until numerically and computationally simple dynamical solutions, like a variation of the operator splitting approach (OSA) and the direct substitution approach (DSA), are obtained. As several solution methods are pointed out, connections between previous pH modelling approaches are established. The final reformulation of the system according to the DSA allows for quantification of the influences of kinetic processes on the rate of change of proton concentration in models containing multiple biogeochemical processes. These influences are calculated including the effect of re-equilibration of the system due to a set of acid-base reactions in local equilibrium. This possibility of quantifying influences of modeled processes on the pH makes the end-product of the described model generation procedure a powerful tool for understanding the internal pH dynamics of aquatic systems.
Volume distribution for particles between 3.5 to 2000 μm in the upper 200 m region of the South Pacific Gyre
Authors: Stemmann L. , Eloire D. , Sciandra A. , Jackson G. A. , Guidi L. , Picheral M. , Gorsky G.
Published: April 2010

Abstract. The French JGOFS BIOSOPE cruise crossed the South Pacific Gyre (SPG) on a transect between the Marquesas Islands and the Chilean coast on a 7500 km transect (8° S–34° S and 8° W–72° W). The number and volume distributions of small (3.5100 μm) were analysed combining two instruments, the HIAC/Royco Counter (for the small particles) and the Underwater Video Profiler (UVP, for the large particles). For the HIAC analysis, samples were collected from 12 L CTD Rosette bottles and immediately analysed on board while the UVP provided an estimate of in situ particle concentrations and size in a continuous profile. Out of 76 continuous UVP and 117 discrete HIAC vertical profiles, 25 had both sets of measurements, mostly at a site close to the Marquesas Islands (site MAR) and one in the center of the gyre (site GYR). At GYR, the particle number spectra from few μm to few mm were fit with power relationships having slopes close to −4. At MAR, the high abundance of large objects, probably living organisms, created a shift in the full size spectra of particles such that a single slope was not appropriate. The small particle pool at both sites showed a diel pattern while the large did not, implying that the movement of mass toward the large particles does not take place at daily scale in the SPG area. Despite the relatively simple nature of the number spectra, the volume spectra were more variable because what were small deviations from the straight line in a log-log plot were large variations in the volume estimates. In addition, the mass estimates from the size spectra are very sensitive to crucial parameters such as the fractal dimension and the POC/Dry Weight ratio. Using consistent values for these parameters, we show that the volume of large particles can equal the volume of the smaller particles. However the proportion of material in large particles decreased from the mesotrophic conditions at the border of the SPG to the ultra-oligotrophy of the center in the upper 200 m depth. We expect large particles to play a major role in the trophic interaction in the upper waters of the South Pacific Gyre.
Distribution of micro-organisms along a transect in the South-East Pacific Ocean (BIOSOPE cruise) using epifluorescence microscopy
Authors: Masquelier S. , Vaulot D.
Published: April 2010

Abstract. The distribution of selected groups of micro-organisms was analyzed along a South-East Pacific Ocean transect sampled during the BIOSOPE cruise in 2004. The transect could be divided into four regions of contrasted trophic status: a High Nutrient Low Chlorophyll (HNLC) region (mesotrophic) near the equator, the South-East Pacific Ocean gyre (hyper-oligotrophic), a transition region between the gyre and the coast of South America (moderately oligotrophic), and the Chile upwelling (eutrophic). The abundance of phycoerythrin containing picocyanobacteria (PE picocyanobacteria), autotrophic and heterotrophic eukaryotes (classified into different size ranges), dinoflagellates, and ciliates was determined by epifluorescence microscopy after DAPI staining. Despite some apparent loss of cells due to sample storage, distribution patterns were broadly similar to those obtained by flow cytometry for PE picocyanobacteria and picoeukaryotes. All populations reached a maximum in the Chile upwelling and a minimum near the centre of the gyre. The maximum abundance of PE picocyanobacteria was 70 103 cell mL−1. Abundance of autotrophic eukaryotes and dinoflagellates reached 24.5 103 and 20 cell mL−1, respectively. We observed a shift in the size distribution of autotrophic eukaryotes from 2–5 μm in eutrophic and mesotrophic regions to less than 2 μm in the central region. The contribution of autotrophic eukaryotes to total eukaryotes was the lowest in the central gyre. Maximum concentration of ciliates (18 cell mL−1) also occurred in the Chile upwelling, but, in contrast to the other groups, their abundance was very low in the HNLC zone and near the Marquesas Islands. Two key findings of this work that could not have been observed with other techniques are the high percentage of PE picocyanobacteria forming colonies in the HLNC region and the observation of numerous dinoflagellates with bright green autofluorescence.
Competition for inorganic and organic forms of nitrogen and phosphorous between phytoplankton and bacteria during an Emiliania huxleyi spring bloom
Authors: Løvdal T. , Eichner C. , Grossart H.-P. , Carbonnel V. , Chou L. , Martin-Jézéquel V. , Thingstad T. F.
Published: April 2010

Abstract. Using 15N and 33P, we measured the turnover of organic and inorganic nitrogen (N) and phosphorus (P) substrates, and the partitioning of N and P from these sources into two size fractions of marine osmotrophs during the course of a phytoplankton bloom in a nutrient manipulated mesocosm. The larger size fraction (>0.8 μm), mainly consisting of the coccolithophorid Emiliania huxleyi, but also including an increasing amount of large particle-associated bacteria as the bloom proceeded, dominated uptake of the inorganic forms NH4+, NO3−, and PO43−. The uptake of N from leucine, and P from ATP and dissolved DNA, was initially dominated by the 0.8–0.2 μm size fraction, but shifted towards dominance by the >0.8 μm size fraction as the system turned to an increasing degree of N-deficiency. Normalizing uptake to biomass of phytoplankton and heterotrophic bacteria revealed that organisms in the 0.8–0.2 μm size fraction had higher specific affinity for leucine-N than those in the >0.8 μm size fraction when N was deficient, whereas the opposite was the case for NH4+. There was no such difference regarding the specific affinity for P substrates. Since heterotrophic bacteria seem to acquire N from organic compounds like leucine more efficiently than phytoplankton, our results suggest different structuring of the microbial food chain in N-limited relative to P-limited environments.
Particle optical backscattering along a chlorophyll gradient in the upper layer of the eastern South Pacific Ocean
Authors: Huot Y. , Morel A. , Twardowski M. S. , Stramski D. , Reynolds R. A.
Published: April 2010

Abstract. The particulate scattering, bp, and backscattering, bbp, coefficients are determined by the concentration and physical properties of suspended particles in the ocean. They provide a simple description of the influence of these particles on the scattering of light within the water column. For the remote observation of ocean color, bbp along with the total absorption coefficient govern the amount and spectral qualities of light leaving the sea surface. However, for the construction and validation of ocean color models measurements of bbp are still lacking, especially at low chlorophyll a concentrations ([Chl]). Here, we examine the relationships between spectral bbp and bp vs. [Chl] along an 8000 km transect crossing the Case 1 waters of the eastern South Pacific Gyre. In these waters, over the entire range of [Chl] encountered (~0.02–2 mg m3), both bbp and bp can be related to [Chl] by power functions (i.e. bp or bbp=α[Chl]β). Regression analyses are carried out to provide the parameters α and β for several wavelengths throughout the visible for both bbp and bp. When applied to the data, these functions retrieve the same fraction of variability in bbp and bp (coefficients of determination between 0.82 and 0.88). The bbp coefficient fall within the bounds of previous measurements at intermediate and high [Chl] recently published. Its dependence on [Chl] below ~0.1 mg m−3 is described for the first time with in situ data. The backscattering ratio (i.e. bbp/bp) with values near 0.01 for all stations appears to be spectrally neutral and not significantly dependent on [Chl]. These results should foster the development of improved forward models of the mean optical properties for oceanic Case 1 waters as well as inverse models based upon them.
Sea-surface CO2 fugacity in the subpolar North Atlantic
Authors: Olsen A. , Brown K. R. , Chierici M. , Johannessen T. , Neill C.
Published: April 2010

Abstract. We present the first year-long subpolar trans-Atlantic set of surface seawater CO2 fugacity (fCO2sw) data. The data were obtained aboard the MV Nuka Arctica in 2005 and provide a quasi-continuous picture of the fCO2sw variability between Denmark and Greenland. Complementary real-time high-resolution data of surface chlorophyll-a (chl-a) concentrations and mixed layer depth (MLD) estimates have been collocated with the fCO2sw data. Off-shelf fCO2sw data exhibit a pronounced seasonal cycle. In winter, surface waters are saturated to slightly supersaturated over a wide range of temperatures. Through spring and summer, fCO2sw decreases by approximately 60 μatm, due to biological carbon consumption, which is not fully counteracted by the fCO2sw increase due to summer warming. The changes are synchronous with changes in chl-a concentrations and MLD, both of which are exponentially correlated with fCO2sw in off-shelf regions.
Inorganic carbon time series at Ocean Weather Station M in the Norwegian Sea
Authors: Skjelvan I. , Falck E. , Rey F. , Kringstad S. B.
Published: April 2010

Abstract. Dissolved inorganic carbon (CT) has been collected at Ocean Weather Station M (OWSM) in the Norwegian Sea since 2001. Seasonal variations in (CT) are confined to the upper 50 m, where the biology is active, and below this layer no clear seasonal signal is seen. From winter to summer the surface (CT) concentration typical drop from 2140 to about 2040 μmol kg−1, while a deep water (CT) concentration of about 2163 μmol kg−1 is measured throughout the year. Observations show an annual increase in salinity normalized carbon concentration (nCT) of 1.3±0.7 μmol kg−1 yr−1 in the surface layer, which is equivalent to a pCO2 increase of 2.6±1.2 μatm yr−1, i.e. larger than the atmospheric increase in this area (2.1±0.2 μatm yr-1). Observations also show an annual increase in the deep water nCT of 0.57±0.24 μmol kg−1 yr−1, of which about 15% is due to inflow of old Arctic water with larger amounts of remineralised matter. The remaining part has an anthropogenic origin and sources for this might be Greenland Sea surface water, Iceland Sea surface water, and/or recirculated Atlantic Water. By using an extended multi linear regression method (eMLR) it is verified that anthropogenic carbon has entered the whole water column at OWSM.
On the treatment of particulate organic matter sinking in large-scale models of marine biogeochemical cycles
Authors: Kriest I. , Oschlies A.
Published: April 2010

Abstract. Various functions have been suggested and applied to represent the sedimentation and remineralisation of particulate organic matter (POM) in numerical ocean models. Here we investigate some representations commonly used in large-scale biogeochemical models: a constant sinking speed, a sinking speed increasing with depth, a spectrum of particles with different size and different size-dependent sinking velocities, and a model that assumes a power law particle size distribution everywhere in the water column. The analysis is carried out for an idealised one-dimensional water column, under stationary boundary conditions for surface POM. It focuses on the intrinsic assumptions of the respective sedimentation function and their effect on POM mass, mass flux, and remineralisation profiles. A constant and uniform sinking speed does not appear appropriate for simulations exceeding a few decades, as the sedimentation profile is not consistent with observed profiles. A spectrum of size classes, together with size-dependent sinking and constant remineralisation, causes the sinking speed of total POM to increase with depth. This increase is not strictly linear with depth. Its particular form will further depend on the size distribution of the POM ensemble at the surface. Assuming a power law particle size spectrum at the surface, this model results in unimodal size distributions in the ocean interior. For the size-dependent sinking model, we present an analytic integral over depth and size that can explain regional variations of remineralisation length scales in response to regional patterns in trophodynamic state.
Analyzing the causes and spatial pattern of the European 2003 carbon flux anomaly using seven models
Authors: Vetter M. , Churkina G. , Jung M. , Reichstein M. , Zaehle S. , Bondeau A. , Chen Y. , Ciais P. , Feser F. , Freibauer A. , Geyer R. , Jones C. , Papale D. , Tenhunen J. , Tomelleri E. , Trusilova K. , Viovy N. , Heimann M.
Published: April 2010

Abstract. Globally, the year 2003 is associated with one of the largest atmospheric CO2 rises on record. In the same year, Europe experienced an anomalously strong flux of CO2 from the land to the atmosphere associated with an exceptionally dry and hot summer in Western and Central Europe. In this study we analyze the magnitude of this carbon flux anomaly and key driving ecosystem processes using simulations of seven terrestrial ecosystem models of different complexity and types (process-oriented and diagnostic). We address the following questions: (1) how large were deviations in the net European carbon flux in 2003 relative to a short-term baseline (1998–2002) and to longer-term variations in annual fluxes (1980 to 2005), (2) which European regions exhibited the largest changes in carbon fluxes during the growing season 2003, and (3) which ecosystem processes controlled the carbon balance anomaly . In most models the prominence of 2003 anomaly in carbon fluxes declined with lengthening of the reference period from one year to 16 years. The 2003 anomaly for annual net carbon fluxes ranged between 0.35 and –0.63 Pg C for a reference period of one year and between 0.17 and –0.37 Pg C for a reference period of 16 years for the whole Europe. In Western and Central Europe, the anomaly in simulated net ecosystem productivity (NEP) over the growing season in 2003 was outside the 1σ variance bound of the carbon flux anomalies for 1980–2005 in all models. The estimated anomaly in net carbon flux ranged between –42 and –158 Tg C for Western Europe and between 24 and –129 Tg C for Central Europe depending on the model used. All models responded to a dipole pattern of the climate anomaly in 2003. In Western and Central Europe NEP was reduced due to heat and drought. In contrast, lower than normal temperatures and higher air humidity decreased NEP over Northeastern Europe. While models agree on the sign of changes in simulated NEP and gross primary productivity in 2003 over Western and Central Europe, models diverge in the estimates of anomalies in ecosystem respiration. Except for two process models which simulate respiration increase, most models simulated a decrease in ecosystem respiration in 2003. The diagnostic models showed a weaker decrease in ecosystem respiration than the process-oriented models. Based on the multi-model simulations we estimated the total carbon flux anomaly over the 2003 growing season in Europe to range between –0.02 and –0.27 Pg C relative to the net carbon flux in 1998–2002.
Climate-induced interannual variability of marine primary and export production in three global coupled climate carbon cycle models
Authors: Schneider B. , Bopp L. , Gehlen M. , Segschneider J. , Frölicher T. L. , Cadule P. , Friedlingstein P. , Doney S. C. , Behrenfeld M. J. , Joos F.
Published: April 2010

Abstract. Fully coupled climate carbon cycle models are sophisticated tools that are used to predict future climate change and its impact on the land and ocean carbon cycles. These models should be able to adequately represent natural variability, requiring model validation by observations. The present study focuses on the ocean carbon cycle component, in particular the spatial and temporal variability in net primary productivity (PP) and export production (EP) of particulate organic carbon (POC). Results from three coupled climate carbon cycle models (IPSL, MPIM, NCAR) are compared with observation-based estimates derived from satellite measurements of ocean colour and results from inverse modelling (data assimilation). Satellite observations of ocean colour have shown that temporal variability of PP on the global scale is largely dominated by the permanently stratified, low-latitude ocean (Behrenfeld et al., 2006) with stronger stratification (higher sea surface temperature; SST) being associated with negative PP anomalies. Results from all three coupled models confirm the role of the low-latitude, permanently stratified ocean for anomalies in globally integrated PP, but only one model (IPSL) also reproduces the inverse relationship between stratification (SST) and PP. An adequate representation of iron and macronutrient co-limitation of phytoplankton growth in the tropical ocean has shown to be the crucial mechanism determining the capability of the models to reproduce observed interactions between climate and PP.
Sensitivity of sea-to-air CO2 flux to ecosystem parameters from an adjoint model
Authors: Tjiputra J. F. , Winguth A. M. E.
Published: April 2010

Abstract. An adjoint model is applied to examine the biophysical factors that control surface pCO2 in different ocean regions. In the tropical Atlantic and Indian Oceans, the annual cycle of pCO2 in the model is highly dominated by temperature variability, whereas both the temperature and dissolved inorganic carbon (DIC) are important in the tropical Pacific. In the high-latitude North Atlantic and Southern Oceans, DIC variability mainly drives the annual cycle of surface pCO2. Phosphate addition significantly increases the carbon uptake in the tropical and subtropical regions, whereas nitrate addition increases the carbon uptake in the subarctic Pacific Ocean. The carbon uptake is also sensitive to changes in the physiological rate parameters in the ecosystem model in the equatorial Pacific, North Pacific, North Atlantic, and the Southern Ocean. Zooplankton grazing plays a major role in carbon exchange, especially in the HNLC regions. The grazing parameter regulates the phytoplankton biomass at the surface, thus controlling the biological production and the carbon uptake by photosynthesis. In the oligotrophic subtropical regions, the sea-to-air CO2 flux is sensitive to changes in the phytoplankton exudation rate by altering the flux of regenerated nutrients essential for photosynthesis.
Dependence of CO2 advection patterns on wind direction on a gentle forested slope
Authors: Heinesch B. , Yernaux Y. , Aubinet M.
Published: April 2010

Abstract. Gravitational flows generated on a gentle slope in stable conditions were analysed at a forested site at Vielsalm in Belgium. There were two distinct situations at the site, one corresponding to vertical convergence, characterised by a negative vertical velocity at the canopy top and horizontal velocity divergence below the canopy, the other corresponding to an equilibrium situation without any vertical movement. The causes of these two distinct flow patterns were analysed. These measurements combined with those of the horizontal CO2 concentration gradient below the canopy supported the dilution hypothesis suggested by Aubinet et al. (2003): the horizontal CO2 concentration gradient is negative in convergence situations but slightly positive in equilibrium conditions. The existence of such patterns allows us to confirm the coherence of advection observations made at the site. However, the sum of turbulent CO2 flux, changes in CO2 storage and advective terms were shown to greatly overestimate the expected net ecosystem exchange in the convergence conditions. The most probable cause was identified as being a poor estimate of the vertical profile of the vertical velocity component.
Multiple quality tests for analysing CO2 fluxes in a beech temperate forest
Authors: Longdoz B. , Gross P. , Granier A.
Published: April 2010

Abstract. Eddy covariance (EC) measurements are widely used to estimate the amount of carbon sequestrated by terrestrial biomes. The decision to exclude an EC flux from a database (bad quality records, turbulence regime not adequate, footprint problem,...) becomes an important step in the CO2 flux determination procedure. In this paper an innovative combination of existing assessment tests is used to give a relatively complete evaluation of the net ecosystem exchange measurements. For the 2005 full-leaf season at the Hesse site, the percentage of rejected half-hours is relatively high (59.7%) especially during night-time (68.9%). This result strengthens the importance of the data gap filling method. The data rejection does not lead to a real improvement of the accuracy of the relationship between the CO2 fluxes and the climatic factors especially during the nights. The spatial heterogeneity of the soil respiration (on a site with relatively homogenous vegetation pattern) seems large enough to mask an increase of the goodness of the fit of the ecosystem respiration measurements with a dependence on soil temperature and water content when the tests are used to reject EC data. However, the data rejected present some common characteristics. Their removal lead to an increase in the total amount of CO2 respired (24%) and photosynthesised (16%) during the 2005 full-leaf season. Consequently the application of our combination of multiple quality tests is able improve the inter-annual analysis. The systematic application on the large database like the CarboEurope and FLUXNET appears to be necessary.
Towards operational remote sensing of forest carbon balance across Northern Europe
Authors: Olofsson P. , Lagergren F. , Lindroth A. , Lindström J. , Klemedtsson L. , Kutsch W. , Eklundh L.
Published: April 2010

Abstract. Monthly averages of ecosystem respiration (ER), gross primary production (GPP) and net ecosystem exchange (NEE) over Scandinavian forest sites were estimated using regression models driven by air temperature (AT), absorbed photosynthetically active radiation (APAR) and vegetation indices. The models were constructed and evaluated using satellite data from Terra/MODIS and measured data collected at seven flux tower sites in northern Europe. Data used for model construction was excluded from the evaluation. Relationships between ground measured variables and the independent variables were investigated. It was found that the enhanced vegetation index (EVI) at 250 m resolution was highly noisy for the coniferous sites, and hence, 1 km EVI was used for the analysis. Linear relationships between EVI and the biophysical variables were found: correlation coefficients between EVI and GPP, NEE, and AT ranged from 0.90 to 0.79 for the deciduous data, and from 0.85 to 0.67 for the coniferous data. Due to saturation, there were no linear relationships between normalized difference vegetation index (NDVI) and the ground measured parameters found at any site. APAR correlated better with the parameters in question than the vegetation indices. Modeled GPP and ER were in good agreement with measured values, with more than 90% of the variation in measured GPP and ER being explained by the coniferous models. The site-specific respiration rate at 10°C (R10) was needed for describing the ER variation between sites. Even though monthly NEE was modeled with less accuracy than GPP, 61% and 75% (dec. and con., respectively) of the variation in the measured time series was explained by the model. These results are important for moving towards operational remote sensing of forest carbon balance across Northern Europe.
Impact of variable air-sea O2 and CO2 fluxes on atmospheric potential oxygen (APO) and land-ocean carbon sink partitioning
Authors: Nevison C. D. , Mahowald N. M. , Doney S. C. , Lima I. D. , Cassar N.
Published: April 2010

Abstract. A three dimensional, time-evolving field of atmospheric potential oxygen (APO ~O2/N2+CO2) was estimated using surface O2, N2 and CO2 fluxes from the WHOI ocean ecosystem model to force the MATCH atmospheric transport model. Land and fossil carbon fluxes were also run in MATCH and translated into O2 tracers using assumed O2:CO2 stoichiometries. The modeled seasonal cycles in APO agree well with the observed cycles at 13 global monitoring stations, with agreement helped by including oceanic CO2 in the APO calculation. The modeled latitudinal gradient in APO is strongly influenced by seasonal rectifier effects in atmospheric transport. An analysis of the APO-vs.-CO2 mass-balance method for partitioning land and ocean carbon sinks was performed in the controlled context of the MATCH simulation, in which the true surface carbon and oxygen fluxes were known exactly. This analysis suggests uncertainty of up to ±0.2 PgC in the inferred sinks due to variability associated with sparse atmospheric sampling. It also shows that interannual variability in oceanic O2 fluxes can cause large errors in the sink partitioning when the method is applied over short timescales. However, when decadal or longer averages are used, the variability in the oceanic O2 flux is relatively small, allowing carbon sinks to be partitioned to within a standard deviation of 0.1 Pg C/yr of the true values, provided one has an accurate estimate of long-term mean O2 outgassing.
Carbon isotope discrimination of C3 vegetation in Central Asian grassland as related to long-term and short-term precipitation patterns
Authors: Wittmer M. H. O. M. , Auerswald K. , Tungalag R. , Bai Y. F. , Schäufele R. , Schnyder H.
Published: April 2010

Abstract. The relationship between carbon isotope discrimination (13Δ) of C3 vegetation and long-term (30 years) and short-term (growing period) precipitation was investigated. Different species of Stipa, a dominant grass genus in the (semi-)arid Asian steppes, and other C3 species were collected along aridity gradients in Inner Mongolia in 2005 (11 sites, 71 samples) and in the Republic of Mongolia in 2006 (40 sites, 45 samples). The data set was expanded with published and unpublished data of Stipa and other C3 species (11 studies covering 8 years, including 64 observations of Stipa, and 103 observations of other C3 species) and C3 community bulk-samples (11 samples). Weather data were geostatistically interpolated for all sampling sites and years. 13Δ of Stipa followed different relationships for the individual years when related to mean annual precipitation due to large anomalies between annual and long-term average precipitation patterns. However, the 13Δ response to rainfall converged when the (long-term) mean annual precipitation was replaced by year-specific mean daily precipitation during the growing period (PG). Remarkably, the 13Δ-response to (PG) for C3 species as a whole (including herbaceous dicots, semi-shrubs and grasses) and also the C3 community-level response were virtually identical to that of Stipa. The relation was also valid outside the geographical and climatic range where it was developed, giving proof of its robustness.
Effect of UV radiation and temperature on the emission of methane from plant biomass and structural components
Authors: Vigano I. , van Weelden H. , Holzinger R. , Keppler F. , McLeod A. , Röckmann T.
Published: April 2010

Abstract. The recently reported finding that plant matter and living plants produce significant amounts of the important greenhouse gas methane under aerobic conditions has led to an intense scientific and public controversy. Whereas some studies question the up-scaling method that was used to estimate the global source strength, others have suggested that experimental artifacts could have caused the reported signals, and two studies, one based on isotope labeling, have recently reported the absence of CH4 emissions from plants. Here we show – using several independent experimental analysis techniques – that dry and detached fresh plant matter, as well as several structural plant components, emit significant amounts of methane upon irradiation with UV light and/or heating. Emissions from UV irradiation are almost instantaneous, indicating a direct photochemical process. Long-time irradiation experiments demonstrate that the size of the CH4 producing reservoir is large, exceeding potential interferences from degassing or desorption processes by several orders of magnitude. A dry leaf of a pure 13C plant produces 13CH4 at a similar rate as dry leaves of non-labeled plants produce non-labeled methane.
Distribution of lipid biomarkers and carbon isotope fractionation in contrasting trophic environments of the South East Pacific
Authors: Tolosa I. , Miquel J.-C. , Gasser B. , Raimbault P. , Goyet C. , Claustre H.
Published: April 2010

Abstract. The distribution of lipid biomarkers and their stable carbon isotope composition was investigated on suspended particles from different contrasting trophic environments at six sites in the South East Pacific. High algal biomass with diatom-related lipids (24-methylcholesta-5,24(28)-dien-3β-ol, C25 HBI alkenes, C16:4 FA, C20:5 FA) was characteristic in the upwelling zone, whereas haptophyte lipids (long-chain (C37-C39) unsaturated ketones) were proportionally most abundant in the nutrient-poor settings of the centre of the South Pacific Gyre and on its easter edge. The dinoflagellate–sterol, 4α-23,24-trimethylcholest-22(E)-en-3β-ol, was a minor contributor in all of the studied area and the cyanobacteria-hydrocarbon, C17n-alkane, was at maximum in the high nutrient low chlorophyll regime of the subequatorial waters near the Marquesas archipelago. The taxonomic and spatial variability of the relationships between carbon photosynthetic fractionation and environmental conditions for four specific algal taxa (diatoms, haptophytes, dinoflagellates and cyanobacteria) was also investigated. The carbon isotope fractionation factor (εp) of the 24-methylcholesta-5,24(28)-dien-3β-ol diatom marker, varied over a range of 16% along the different trophic systems. In contrast, εp of dinoflagellate, cyanobacteria and alkenone markers varied only by 7–10‰. The low fractionation factors and small variations between the different phytoplankton markers measured in the upwelling area likely reveals uniformly high specific growth rates within the four phytoplankton taxa, and/or that transport of inorganic carbon into phytoplankton cells may not only occur by diffusion but also by other carbon concentrating mechanisms (CCM). In contrast, in the oligotrophic zone, i.e. gyre and eastgyre, relatively high εp values, especially for the diatom marker, indicate diffusive CO2 uptake by the eukaryotic phytoplankton. At these nutrient-poor sites, the lower εp values for haptophytes, dinoflagellates and cyanobacteria indicate higher growth rates or major differences on the carbon uptake mechanisms compared to diatoms.
Detecting regional variability in sources and sinks of carbon dioxide: a synthesis
Authors: Dolman A. J. , Gerbig C. , Noilhan J. , Sarrat C. , Miglietta F.
Published: April 2010

Abstract. The current paper reviews the experimental setup of the CarboEurope Experimental Strategy (CERES) campaigns with the aim of providing an overview of the instrumentation used, the data-set and associated modelling. It then assesses progress in the field of regional observation and modelling of carbon fluxes, bringing the papers of this special issue into a somewhat broader context of analysis. Instrumental progress has been obtained in the field of remotely monitoring from tall towers and the experimental planning. Flux measurements from aircraft are now capable, within some constraints, to provide regular regional observations of fluxes of CO2, latent and sensible heat. Considerable effort still needs to be put into calibrating the surface schemes of models, as they have direct impact on the input of energy, moisture and carbon fluxes in the boundary layer. Overall, the mesoscale models appear to be capable of simulating the large scale dynamics of the region, but in the fine detail, like the precise horizontal and vertical CO2 field differences between the models still exist. These errors translate directly into transport uncertainty, when the forward simulations are used in inverse mode. Quantification of this uncertainty, including that of inadequate boundary layer height modelling, still remains a major challenge for state of the art mesoscale models. Progress in inverse models has been slow, but has shown that it is possible to estimate some of the errors involved, and that using the combination of observations. Overall, the capability to produce regional, high-resolution estimates of carbon exchange, exist in potential, but the routine application will require considerable effort, both in the experimental as in the modelling domain.
African CO emissions between years 2000 and 2006 as estimated from MOPITT observations
Authors: Chevallier F. , Fortems A. , Bousquet P. , Pison I. , Szopa S. , Devaux M. , Hauglustaine D. A.
Published: April 2010

Abstract. The space-time variations of the carbon budget at the Earth's surface are highly variable and quantifying them represents a major scientific challenge. One strategy consists in inferring the carbon surface fluxes from the atmospheric concentrations. An inversion scheme for the hydrocarbon oxidation chain, that includes CO and CH4, is presented here with a focus on the African continent. It is based on a variational principle. The multi-tracer system has been built as an extension of a system initially developed for CO2 and includes a new simplified non-linear chemistry module. Individual in situ measurements of methyl-chloroform and individual retrievals of CO concentrations from the Measurements Of Pollution In The Troposphere (MOPITT) space-born instrument have been processed by the new system for the period 2000–2006 to infer the time series of CO emissions at the resolution of 2.5°×3.75° (latitude, longitude). It is shown that the analysed concentrations improve the fit to five independent surface measurement stations located in or near Africa by up to 28% compared to standard inventories, which confirms that significant information about CO emissions can be obtained from MOPITT data. In practice, the inversion reduces the amplitude and the interannual variability of the seasonal cycle in the northern part of Africa, with a longer burning season. In the southern part, the inversion mainly shifts the emission peak by one month later in the season, consistent with previously-published inversion results.
Evidence for surface organic matter modulation of air-sea CO2 gas exchange
Authors: Calleja M. Ll. , Duarte C. M. , Prairie Y. T. , Agustí S. , Herndl G. J.
Published: April 2010

Abstract. Air-sea CO2 exchange depends on the air-sea CO2 gradient and the gas transfer velocity (k), computed as a function of wind speed. Large discrepancies among relationships predicting k from wind suggest that other processes also contribute significantly to modulate CO2 exchange. Here we report, on the basis of the relationship between the measured gas transfer velocity and the organic carbon concentration at the ocean surface, a significant role of surface organic matter in suppressing air-sea gas exchange, at low and intermediate winds, in the open ocean, confirming previous observations. The potential role of total surface organic matter concentration (TOC) on gas transfer velocity (k) was evaluated by direct measurements of air-sea CO2 fluxes at different wind speeds and locations in the open ocean. According to the results obtained, high surface organic matter contents may lead to lower air-sea CO2 fluxes, for a given air-sea CO2 partial pressure gradient and wind speed below 5 m s−1, compared to that observed at low organic matter contents. We found the bias in calculated gas fluxes resulting from neglecting TOC to co-vary geographically and seasonally with marine productivity. These results support previous evidences that consideration of the role of organic matter in modulating air-sea CO2 exchange may improve flux estimates and help avoid possible bias associated to variability in surface organic concentration across the ocean.
CO2 budgeting at the regional scale using a Lagrangian experimental strategy and meso-scale modeling
Authors: Sarrat C. , Noilhan J. , Lacarrère P. , Masson V. , Ceschia E. , Ciais P. , Dolman A. , Elbers J. , Gerbig C. , Jarosz N.
Published: April 2010

Abstract. An atmospheric Lagrangian experiment for regional CO2 budgeting with aircraft measurements took place during the CarboEurope Regional Experiment Strategy campaign (CERES) in south-west France, in June 2005. The atmospheric CO2 aircraft measurements taken upstream and downstream of an active and homogeneous pine forest revealed a CO2 depletion in the same air mass, using a Lagrangian strategy. This field experiment was analyzed with a meteorological meso-scale model interactively coupled with a surface scheme, with plant assimilation, ecosystem respiration, anthropogenic CO2 emissions and sea fluxes. First, the model was carefully validated against observations made close to the surface and in the atmospheric boundary layer. Then, the carbon budget was evaluated using the numerous CERES observations, by upscaling the surface fluxes observations, and using the modeling results, in order to estimate the relative contribution of each physical process. A good agreement is found between the two methods which use the same vegetation map: the estimation of the regional CO2 surface flux by the Eulerian meso-scale model budget is close to the budget deduced from the upscaling of the observed surface fluxes, and found a budget between −9.4 and −12.1 μmol.m−2.s−1, depending on the size of the considered area. Nevertheless, the associated uncertainties are rather large for the upscaling method and reach 50%. A third method, using Lagrangian observations of CO2 estimates a regional CO2 budget a few different and more scattered, (−16.8 μmol.m−2.s−1 for the small sub-domain and −8.6 μmol.m−2.s−1 for the larger one). For this budgeting method, we estimate a mean of 31% error, mainly arising from the time of integration between the two measurements of the Lagrangian experiment. The paper describes in details the three methods to assess the regional CO2 budget and the associated errors.
Mineral fertilization did not affect decay of old lignin and SOC in a 13C-labeled arable soil over 36 years
Authors: Hofmann A. , Heim A. , Gioacchini P. , Miltner A. , Gehre M. , Schmidt M. W. I.
Published: April 2010

Abstract. Retardation of soil organic carbon (SOC) decay after nitrogen addition to litter or soil has been suggested in several recent studies and has been attributed to a retardation in lignin decay. With our study we tested the long-term effect of mineral fertilization (N+P) on the decay of the SOC component lignin in arable soil. To achieve this, we tracked 13C-labeled lignin and SOC in an arable soil that is part of a 36-year field experiment (conversion from C3 to C4 crops) with two mineral fertilization levels. We could show that fertilization neither retarded nor enhanced the decay of old SOC or lignin over a period of 36 years, proposing that decay of lignin was less sensitive to fertilization than previously suggested. However, for new, C4-derived lignin there were indications that decay might have been enhanced by the fertilization treatment, whereas decay of new SOC was unaffected.