bluuebunny/crossref_metadata_2025 huggingface dataset:
The evolution of monogamy in response to partner scarcity
Authors: Schacht Ryan , Bell Adrian V.
Published: September 2016

The evolution of monogamy and paternal care in humans is often argued to have resulted from the needs of our expensive offspring. Recent research challenges this claim, however, contending that promiscuous male competitors and the risk of cuckoldry limit the scope for the evolution of male investment. So how did monogamy first evolve? Links between mating strategies and partner availability may offer resolution. While studies of sex roles commonly assume that optimal mating rates for males are higher, fitness payoffs to monogamy and the maintenance of a single partner can be greater when partners are rare. Thus, partner availability is increasingly recognized as a key variable structuring mating behavior. To apply these recent insights to human evolution, we model three male strategies – multiple mating, mate guarding and paternal care – in response to partner availability. Under assumed ancestral human conditions, we find that male mate guarding, rather than paternal care, drives the evolution of monogamy, as it secures a partner and ensures paternity certainty in the face of more promiscuous competitors. Accordingly, we argue that while paternal investment may be common across human societies, current patterns should not be confused with the reason pairing first evolved.
Multiple determinants of lifespan memory differences
Authors: Henson Richard N. , Campbell Karen L. , Davis Simon W. , Taylor Jason R. , Emery Tina , Erzinclioglu Sharon ,   Cam-CAN, Tyler Lorraine K. , Brayne Carol , Bullmore Edward T. , Calder Andrew C. , Cusack Rhodri , Dalgleish Tim , Duncan John , Matthews Fiona E. , Marslen-Wilson William D. , Rowe James B. , Shafto Meredith A. , Cheung Teresa , Geerligs Linda , McCarrey Anna , Mustafa Abdur , Price Darren , Samu David , Treder Matthias , Tsvetanov Kamen A. , van Belle Janna , Williams Nitin , Bates Lauren , Gadie Andrew , Gerbase Sofia , Georgieva Stanimira , Hanley Claire , Parkin Beth , Troy David , Auer Tibor , Correia Marta , Gao Lu , Green Emma , Henriques Rafael , Allen Jodie , Amery Gillian , Amunts Liana , Barcroft Anne , Castle Amanda , Dias Cheryl , Dowrick Jonathan , Fair Melissa , Fisher Hayley , Goulding Anna , Grewa Adarsh , Hale Geoff , Hilton Andrew , Johnson Frances , Johnston Patricia , Kavanagh-Williamson Thea , Kwasniewska Magdalena , McMinn Alison , Norman Kim , Penrose Jessica , Roby Fiona , Rowland Diane , Sargeant John , Squire Maggie , Stevens Beth , Stoddart Aldabra , Stone Cheryl , Thompson Tracy , Yazlik Ozlem , Barnes Dan , Dixon Marie , Hillman Jaya , Mitchell Joanne , Villis Laura , Kievit Rogier A.
Published: September 2016

Memory problems are among the most common complaints as people grow older. Using structural equation modeling of commensurate scores of anterograde memory from a large (N = 315), population-derived sample (www.cam-can.org), we provide evidence for three memory factors that are supported by distinct brain regions and show differential sensitivity to age. Associative memory and item memory are dramatically affected by age, even after adjusting for education level and fluid intelligence, whereas visual priming is not. Associative memory and item memory are differentially affected by emotional valence, and the age-related decline in associative memory is faster for negative than for positive or neutral stimuli. Gray-matter volume in the hippocampus, parahippocampus and fusiform cortex, and a white-matter index for the fornix, uncinate fasciculus and inferior longitudinal fasciculus, show differential contributions to the three memory factors. Together, these data demonstrate the extent to which differential ageing of the brain leads to differential patterns of memory loss.
Aggregation tendencies in the p53 family are modulated by backbone hydrogen bonds
Authors: Cino Elio A. , Soares Iaci N. , Pedrote Murilo M. , de Oliveira Guilherme A. P. , Silva Jerson L.
Published: September 2016

The p53 family of proteins is comprised of p53, p63 and p73. Because the p53 DNA binding domain (DBD) is naturally unstable and possesses an amyloidogenic sequence, it is prone to form amyloid fibrils, causing loss of functions. To develop p53 therapies, it is necessary to understand the molecular basis of p53 instability and aggregation. Light scattering, thioflavin T (ThT) and high hydrostatic pressure (HHP) assays showed that p53 DBD aggregates faster and to a greater extent than p63 and p73 DBDs and was more susceptible to denaturation. The aggregation tendencies of p53, p63 and p73 DBDs were strongly correlated with their thermal stabilities. Molecular Dynamics (MD) simulations indicated specific regions of structural heterogeneity unique to p53, which may be promoted by elevated incidence of exposed backbone hydrogen bonds (BHBs). The results indicate regions of structural vulnerability in the p53 DBD, suggesting new targetable sites for modulating p53 stability and aggregation, a potential approach to cancer therapy.
A new autosomal dominant eye and lung syndrome linked to mutations in TIMP3 gene
Authors: Meunier Isabelle , Bocquet Béatrice , Labesse Gilles , Zeitz Christina , Defoort-Dhellemmes Sabine , Lacroux Annie , Mauget-Faysse Martine , Drumare Isabelle , Gamez Anne-Sophie , Mathieu Cyril , Marquette Virginie , Sagot Lola , Dhaenens Claire-Marie , Arndt Carl , Carroll Patrick , Remy-Jardin Martine , Cohen Salomon Yves , Sahel José-Alain , Puech Bernard , Audo Isabelle , Mrejen Sarah , Hamel Christian P.
Published: September 2016

To revisit the autosomal dominant Sorsby fundus dystrophy (SFD) as a syndromic condition including late-onset pulmonary disease. We report clinical and imaging data of ten affected individuals from 2 unrelated families with SFD and carrying heterozygous TIMP3 mutations (c.572A > G, p.Y191C, exon 5, in family 1 and c.113C > G, p.S38C, exon 1, in family 2). In family 1, all SFD patients older than 50 (two generations) had also a severe emphysema, despite no history of smoking or asthma. In the preceding generation, the mother died of pulmonary emphysema and she was blind after the age of 50. Her two great-grandsons (<20 years), had abnormal Bruch Membrane thickness, a sign of eye disease. In family 2, eye and lung diseases were also associated in two generations, both occurred later and lung disease was moderate (bronchiectasis). This is the first report of a syndromic SFD in line with the mouse model uncovering the role of TIMP3 in human lung morphogenesis and functions. The TIMP3 gene should be screened in familial pulmonary diseases with bronchiectasis, associated with a medical history of visual loss. In addition, SFD patients should be advised to avoid tobacco consumption, to practice sports and to undergo regular pulmonary examinations.
The C-terminal region of OVGP1 remodels the zona pellucida and modifies fertility parameters
Authors: Algarra B. , Han L. , Soriano-Úbeda C. , Avilés M. , Coy P. , Jovine L. , Jiménez-Movilla M.
Published: September 2016

OVGP1 is the major non-serum glycoprotein in the oviduct fluid at the time of fertilization and early embryo development. Its activity differs among species. Here, we show that the C-terminal region of recombinant OVGP1 regulates its binding to the extracellular zona pellucida and affects its activity during fertilization. While porcine OVGP1 penetrates two-thirds of the thickness of the zona pellucida, shorter OVGP1 glycoproteins, including rabbit OVGP1, are restricted to the outer one-third of the zona matrix. Deletion of the C-terminal region reduces the ability of the glycoprotein to penetrate through the zona pellucida and prevents OVGP1 endocytosis. This affects the structure of the zona matrix and increases its resistance to protease digestion. However, only full-length porcine OVGP1 is able to increase the efficiency rate ofin vitrofertilization. Thus, our findings document that the presence or absence of conserved regions in the C-terminus of OVGP1 modify its association with the zona pellucida that affects matrix structure and renders the zona matrix permissive to sperm penetration and OVGP1 endocytosis into the egg.
Space Charge Modulated Electrical Breakdown
Authors: Li Shengtao , Zhu Yuanwei , Min Daomin , Chen George
Published: September 2016

Electrical breakdown is one of the most important physical phenomena in electrical and electronic engineering. Since the early 20th century, many theories and models of electrical breakdown have been proposed, but the origin of one key issue, that the explanation for dc breakdown strength being twice or higher than ac breakdown strength in insulating materials, remains unclear. Here, by employing a bipolar charge transport model, we investigate the space charge dynamics in both dc and ac breakdown processes. We demonstrate the differences in charge accumulations under both dc and ac stresses and estimate the breakdown strength, which is modulated by the electric field distortion induced by space charge. It is concluded that dc breakdown initializes in the bulk whereas ac breakdown initializes in the vicinity of the sample-electrode interface. Compared with dc breakdown, the lower breakdown strength under ac stress and the decreasing breakdown strength with an increase in applied frequency, are both attributed to the electric field distortion induced by space charges located in the vicinity of the electrodes.
Emergence and evolution of inter-specific segregating retrocopies in cynomolgus monkey (Macaca fascicularis) and rhesus macaque (Macaca mulatta)
Authors: Zhang Xu , Zhang Qu , Su Bing
Published: September 2016

Retroposition is an RNA-mediated mechanism to generate gene duplication, and is believed to play an important role in genome evolution and phenotypic adaptation in various species including primates. Previous studies suggested an elevated rate of recent retroposition in the rhesus macaque genome. To better understand the impact of retroposition on macaque species which have undergone an adaptive radiation approximately 3–6 million years ago, we developed a bioinformatics pipeline to identify recently derived retrocopies in cynomolgus monkeys. As a result, we identified seven experimentally validated young retrocopies, all of which are polymorphic in cynomolgus monkeys. Unexpectedly, five of them are also present in rhesus monkeys and are still segregating. Molecular evolutionary analysis indicates that the observed inter-specific polymorphism is attribute to ancestral polymorphism. Further population genetics analysis provided strong evidence of balancing selection on at least one case (Crab-eating monkey retrocopy 6, or CER6) in both species. CER6 is in adjacent with an immunoglobulin related gene and may be involved in host-pathogen interaction, a well-known target of balancing selection. Altogether, our data support that retroposition is an important force to shape genome evolution and species adaptation.
Time-Course Gene Expression Profiling Reveals a Novel Role of Non-Canonical WNT Signaling During Neural Induction
Authors: Huang Cindy Tzu-Ling , Tao Yunlong , Lu Jianfeng , Jones Jeffrey R. , Fowler Lucas , Weick Jason P. , Zhang Su-Chun
Published: September 2016

The process of neuroepithelial differentiation from human pluripotent stem cells (PSCs) resembles in vivo neuroectoderm induction in the temporal course, morphogenesis, and biochemical changes. This in vitro model is therefore well-suited to reveal previously unknown molecular mechanisms underlying neural induction in humans. By transcriptome analysis of cells along PSC differentiation to early neuroepithelia at day 6 and definitive neuroepithelia at day 10, we found downregulation of genes that are associated with TGF-β and canonical WNT/β-CATENIN signaling, confirming the roles of classical signaling in human neural induction. Interestingly, WNT/Ca2+ signaling was upregulated. Pharmacological inhibition of the downstream effector of WNT/Ca2+ pathway, Ca2+/calmodulin-dependent protein kinase II (CaMKII), led to an inhibition of the neural marker PAX6 and upregulation of epidermal marker K18, suggesting that Ca2+/CaMKII signaling promotes neural induction by preventing the alternative epidermal fate. In addition, our analyses revealed known and novel expression patterns of genes that are involved in DNA methylation, histone modification, as well as epithelial-mesenchymal transition, highlighting potential roles of those genes and signaling pathways during neural differentiation.
Wnt4 is a novel biomarker for the early detection of kidney tubular injury after ischemia/reperfusion injury
Authors: Zhao Shi-Lei , Wei Shi-Yao , Wang Yu-Xiao , Diao Tian-Tian , Li Jian-Si , He Yi-Xin , Yu Jing , Jiang Xi-Yue , Cao Yang , Mao Xin-Yue , Wei Qiu-Ju , Wang Yu , Li Bing
Published: September 2016

Earlier intervention after acute kidney injury would promote better outcomes. Our previous study found that Wnt proteins are promptly upregulated after ischemic kidney injury. Thus, we assessed whether Wnt4 could be an early and sensitive biomarker of tubular injury. We subjected mice to bilateral ischemia/reperfusion injury (IRI). Kidney and urinary Wnt4 expression showed an early increase at 3 hours and increased further at 24 hours post-IRI and was closely correlated with histopathological alterations. Serum creatinine slightly increased at 6 hours, indicating that it was less sensitive than Wnt4 expression. These data were further confirmed by clinical study. Both kidney and urinary Wnt4 expression were significantly increased in patients diagnosed with biopsy-proven minimal change disease (MCD) with tubular injury, all of whom nevertheless had normal estimated glomerular filtration rate (eGFR) and serum creatinine. The increased Wnt4 expression also strongly correlated with histopathological alterations in these MCD patients. In conclusion, this is the first demonstration that increases in both kidney and urinary Wnt4 expression can be detected more sensitively and earlier than serum creatinine after kidney injury. In particular, urinary Wnt4 could be a potential noninvasive biomarker for the early detection of tubular injury.
Niche conservatism in Gynandropaa frogs on the southeastern Qinghai-Tibetan Plateau
Authors: Hu Junhua , Broennimann Olivier , Guisan Antoine , Wang Bin , Huang Yan , Jiang Jianping
Published: September 2016

The role of ecological niche in lineage diversification has been the subject of long-standing interest of ecologists and evolutionary biologists.Gynandropaafrogs diversified into three independent clades endemic to the southeastern Qinghai-Tibetan Plateau. Here, we address the question whether these clades kept the same niche after separation, and what it tells us about possible diversification processes. We applied predictions in geographical (G)-space and tests of niche conservatism in environmental (E)-space. Niche models in G-space indicate separate regions with high suitability for the different clades, with some potential areas of sympatry. While the pair of central and eastern clades displayed the largest niche overlap for most variables, and strict niche equivalency was rejected for all clade-pairs, we found no strong evidence for niche divergence, but rather the signature of niche conservatism compared to null models in E-space. These results suggest a common ancestral ecological niche, and as such give good support to divergence through allopatric speciation, but alternative explanations are also possible. Our findings illustrate how testing for niche conservatism in lineage diversification can provide insights into underlying speciation processes, and how this information may guide further research and conservation practices, as illustrated here for amphibians on the Qinghai-Tibetan Plateau.
Understanding the Solvent Molecules Induced Spontaneous Growth of Uncapped Tellurium Nanoparticles
Authors: Liu Jun , Liang Changhao , Zhu Xiaoguang , Lin Yue , Zhang Hao , Wu Shouliang
Published: September 2016

Understanding the thermodynamic behavior and growth kinetics of colloidal nanoparticles (NPs) is essential to synthesize materials with desirable structures and properties. In this paper, we present specific uncapped Te colloidal NPs obtained through laser ablation of Te in various protic or aprotic solvents. At ambient temperature and pressure, the uncapped Te NPs spontaneously exhibited analogous evolution and growth of “nanoparticle-nanochain-agglomerate-microsphere” in different solvents. The distinctive growth kinetics of the formation of nanochains strongly depended on the polarity and dielectric constant of solvent molecules. The growth rate of agglomerates and microspheres was closely related to the zeta potential of the colloidal solution of Te nanochains and the average size of Te agglomerates. Furthermore, the resulting uncapped Te NPs and Te nanochains displayed a prominent size-dependent and structure-inherited chemical reductive ability. These findings provide insights into the growth of active uncapped nanoparticles in various dispersion media. This study also provides an alternative route in designing novel nanostructures of alloys, telluride, and functional composites using Te as a unique reactive precursor.
Characterising the interspecific variations and convergence of gut microbiota in Anseriformes herbivores at wintering areas
Authors: Yang Yuzhan , Deng Ye , Cao Lei
Published: September 2016

Microorganisms in vertebrate guts have been recognized as important symbionts influencing host life. However, it remains unclear about the gut microbiota in long-distance migratoryAnseriformesherbivores, which could be functionally important for these wetland-dependent animals. We collected faeces of the greater white-fronted goose (GWFG), bean goose (BG) and swan goose (SG) from Shengjin Lake (SJL) and Poyang Lake (PYL) in the Yangtze River Floodplain, China. High-throughput sequencing of 16S rRNA V4 region was employed to depict the composition and structure of geese gut microbiota during wintering period. The dominant bacterial phyla across all samples wereFirmicutes, ProteobacteriaandActinobacteria, but significant variations were detected among different goose species and sampling sites, in terms of α diversity, community structures and microbial interactions. We found a significant correlation between diet and the microbial community structure in GWFG-SJL samples. These results demonstrated that host species and diet are potential drivers of goose gut microbiota assemblies. Despite these variations, functions of geese gut microbiota were similar, with great abundances of potential genes involved in nutrient metabolism. This preliminary study would be valuable for future, exhaustive investigations of geese gut microbiota and their interactions with host.
Anomalous thermoelectricity in strained Bi2Te3 films
Authors: Liu Yucong , Chen Jiadong , Deng Huiyong , Hu Gujin , Zhu Daming , Dai Ning
Published: September 2016

Bi2Te3-based alloys have been intensively used for thermoelectric coolers and generators due to their high Seebeck coefficient S. So far, efforts to improve the S have been made mostly on changing the structures and components. Herein, we demonstrate an anomalous thermoelectricity in strained Bi2Te3 films, i.e., the value of S is obviously changed after reversing the direction of temperature gradient. Further theoretical and experimental analysis shows that it originates from the coupling of thermoelectric and flexoelectric effects caused by a stress gradient. Our finding provides a new avenue to adjust the S of Bi2Te3-based thermoelectric materials through flexoelectric polarization.
Competition between members of the tribbles pseudokinase protein family shapes their interactions with mitogen activated protein kinase pathways
Authors: Guan Hongtao , Shuaib Aban , Leon David Davila De , Angyal Adrienn , Salazar Maria , Velasco Guillermo , Holcombe Mike , Dower Steven K. , Kiss-Toth Endre
Published: September 2016

Spatio-temporal regulation of intracellular signalling networks is key to normal cellular physiology; dysregulation of which leads to disease. The family of three mammalian tribbles proteins has emerged as an important controller of signalling via regulating the activity of mitogen activated protein kinases (MAPK), the PI3-kinase induced signalling network and E3 ubiquitin ligases. However, the importance of potential redundancy in the action of tribbles and how the differences in affinities for the various binding partners may influence signalling control is currently unclear. We report that tribbles proteins can bind to an overlapping set of MAPK-kinases (MAPKK) in live cells and dictate the localisation of the complexes. Binding studies in transfected cells reveal common regulatory mechanisms and suggest that tribbles and MAPKs may interact with MAPKKs in a competitive manner. Computational modelling of the impact of tribbles on MAPK activation suggests a high sensitivity of this system to changes in tribbles levels, highlighting that these proteins are ideally placed to control the dynamics and balance of activation of concurrent signalling pathways.
Transparent crosslinked ultrashort peptide hydrogel dressing with high shape-fidelity accelerates healing of full-thickness excision wounds
Authors: Seow Wei Yang , Salgado Giorgiana , Lane E. Birgitte , Hauser Charlotte A. E.
Published: September 2016

Wound healing is a major burden of healthcare systems worldwide and hydrogel dressings offer a moist environment conducive to healing. We describe cysteine-containing ultrashort peptides that self-assemble spontaneously into hydrogels. After disulfide crosslinking, the optically-transparent hydrogels became significantly stiffer and exhibited high shape fidelity. The peptide sequence (LIVAGKC or LK6C) was then chosen for evaluation on mice with full-thickness excision wounds. Crosslinked LK6C hydrogels are handled easily with forceps during surgical procedures and offer an improvement over our earlier study of a non-crosslinked peptide hydrogel for burn wounds. LK6C showed low allergenic potential and failed to provoke any sensitivity when administered to guinea pigs in the Magnusson-Kligman maximization test. When applied topically as a dressing, the medium-infused LK6C hydrogel accelerated re-epithelialization compared to controls. The peptide hydrogel is thus safe for topical application and promotes a superior rate and quality of wound healing.
Common variants in FKBP5 gene and major depressive disorder (MDD) susceptibility: a comprehensive meta-analysis
Authors: Rao Shuquan , Yao Yao , Ryan Joanne , Li Tao , Wang Duan , Zheng Chuan , Xu Yong , Xu Qi
Published: September 2016

Previous studies have investigated the association between common variants in FKBP5 and MDD; however, the results remain inconsistent. In order to conduct a comprehensive meta-analysis of the association between FKBP5 variants and MDD risk, seven studies involving 26582 subjects, including 12491 cases with MDD and 14091 controls, were enrolled totally. Four common SNPs (rs1360780, rs4713916, rs3800373 and rs755658) with complete data from two or more studies were analyzed. In the total sample, there was no evidence of a significant association between MDD and any of the four SNPs using a random-effects model. However, after removing one heterogeneous German study, as indicated by sensitivity analysis, both the rs1360780 T-allele (Z = 2.95, P = 0.003, OR = 1.06, 95% CI = 1.02–1.11) and the rs3800373 C-allele (Z = 3.05, P = 0.002, OR = 1.07, 95% CI 1.02–1.12) were significantly associated with MDD in a fixed-effect model. Our study thus provides support for an association between specific FKBP5 genetic variants and MDD risk. Rs4713916 was not significantly associated with MDD; However, this analysis had limited statistical power and larger sample sizes are required to further validate this result. Future research should also investigate possible gender- and ethnicity-specific differences in the association between FKBP5 and MDD.
A quantitative method to measure biofilm removal efficiency from complex biomaterial surfaces using SEM and image analysis
Authors: Vyas N. , Sammons R. L. , Addison O. , Dehghani H. , Walmsley A. D.
Published: September 2016

Biofilm accumulation on biomaterial surfaces is a major health concern and significant research efforts are directed towards producing biofilm resistant surfaces and developing biofilm removal techniques. To accurately evaluate biofilm growth and disruption on surfaces, accurate methods which give quantitative information on biofilm area are needed, as current methods are indirect and inaccurate. We demonstrate the use of machine learning algorithms to segment biofilm from scanning electron microscopy images. A case study showing disruption of biofilm from rough dental implant surfaces using cavitation bubbles from an ultrasonic scaler is used to validate the imaging and analysis protocol developed. Streptococcus mutans biofilm was disrupted from sandblasted, acid etched (SLA) Ti discs and polished Ti discs. Significant biofilm removal occurred due to cavitation from ultrasonic scaling (p < 0.001). The mean sensitivity and specificity values for segmentation of the SLA surface images were 0.80 ± 0.18 and 0.62 ± 0.20 respectively and 0.74 ± 0.13 and 0.86 ± 0.09 respectively for polished surfaces. Cavitation has potential to be used as a novel way to clean dental implants. This imaging and analysis method will be of value to other researchers and manufacturers wishing to study biofilm growth and removal.
High speed color imaging through scattering media with a large field of view
Authors: Zhuang Huichang , He Hexiang , Xie Xiangsheng , Zhou Jianying
Published: September 2016

Optical imaging through complex media has many important applications. Although research progresses have been made to recover optical image through various turbid media, the widespread application of the technology is hampered by the recovery speed, requirement on specific illumination, poor image quality and limited field of view. Here we demonstrate that above-mentioned drawbacks can be essentially overcome. The realization of high speed color imaging through turbid media is successfully carried out by taking into account the media memory effect, the point spread function, the exit pupil of the optical system, and the optimized signal to noise ratio. By retrieving selected speckles with enlarged field of view, high quality image is recovered with a responding speed only determined by the frame rates of the image capturing devices. The immediate application of the technique is expected to register static and dynamic imaging under human skin to recover information with a wearable device.
Automated Tubule Nuclei Quantification and Correlation with Oncotype DX risk categories in ER+ Breast Cancer Whole Slide Images
Authors: Romo-Bucheli David , Janowczyk Andrew , Gilmore Hannah , Romero Eduardo , Madabhushi Anant
Published: September 2016

Early stage estrogen receptor positive (ER+) breast cancer (BCa) treatment is based on the presumed aggressiveness and likelihood of cancer recurrence. Oncotype DX (ODX) and other gene expression tests have allowed for distinguishing the more aggressive ER+ BCa requiring adjuvant chemotherapy from the less aggressive cancers benefiting from hormonal therapy alone. However these tests are expensive, tissue destructive and require specialized facilities. Interestingly BCa grade has been shown to be correlated with the ODX risk score. Unfortunately Bloom-Richardson (BR) grade determined by pathologists can be variable. A constituent category in BR grading is tubule formation. This study aims to develop a deep learning classifier to automatically identify tubule nuclei from whole slide images (WSI) of ER+ BCa, the hypothesis being that the ratio of tubule nuclei to overall number of nuclei (a tubule formation indicator - TFI) correlates with the corresponding ODX risk categories. This correlation was assessed in 7513 fields extracted from 174 WSI. The results suggests that low ODX/BR cases have a larger TFI than high ODX/BR cases (p < 0.01). The low ODX/BR cases also presented a larger TFI than that obtained for the rest of cases (p < 0.05). Finally, the high ODX/BR cases have a significantly smaller TFI than that obtained for the rest of cases (p < 0.01).
Hydrogen-plasma-induced Rapid, Low-Temperature Crystallization of μm-thick a-Si:H Films
Authors: Zhou H. P. , Xu M. , Xu S. , Liu L. L. , Liu C. X. , Kwek L. C. , Xu L. X.
Published: September 2016

Being a low-cost, mass-production-compatible route to attain crystalline silicon, post-deposition crystallization of amorphous silicon has received intensive research interest. Here we report a low-temperature (300 °C), rapid (crystallization rate of ~17 nm/min) means of a-Si:H crystallization based on high-density hydrogen plasma. A model integrating the three processes of hydrogen insertion, etching, and diffusion, which jointly determined the hydrogenation depth of the excess hydrogen into the treated micrometer thick a-Si:H, is proposed to elucidate the hydrogenation depth evolution and the crystallization mechanism. The effective temperature deduced from the hydrogen diffusion coefficient is far beyond the substrate temperature of 300 °C, which implies additional driving forces for crystallization, i.e., the chemical annealing/plasma heating and the high plasma sheath electric field. The features of LFICP (low-frequency inductively coupled plasma) and LFICP-grown a-Si:H are also briefly discussed to reveal the underlying mechanism of rapid crystallization at low temperatures.
Continuous flow room temperature reductive aqueous homo-coupling of aryl halides using supported Pd catalysts
Authors: Feiz Afsaneh , Bazgir Ayoob , Balu Alina M. , Luque Rafael
Published: September 2016

A convenient and environmentally friendly protocol for the preparation of biaryls at room temperature under continuous flow conditions is reported. A simple reductive homo-coupling Ullmann-type reaction was performed in an H-Cube mini using commercially available supported Pd catalysts under mild reaction conditions, with quantitative conversion to target products. Commercial Pd catalysts were found to be highly stable under the investigated reaction conditions, with a minimum Pd leaching into solution after several reaction runs (ca. 20 h on stream).
Ultrafast Dynamics of Plasmon-Exciton Interaction of Ag Nanowire- Graphene Hybrids for Surface Catalytic Reactions
Authors: Ding Qianqian , Shi Ying , Chen Maodu , Li Hui , Yang Xianzhong , Qu Yingqi , Liang Wenjie , Sun Mengtao
Published: September 2016

Using the ultrafast pump-probe transient absorption spectroscopy, the femtosecond-resolved plasmon-exciton interaction of graphene-Ag nanowire hybrids is experimentally investigated, in the VIS-NIR region. The plasmonic lifetime of Ag nanowire is about 150 ± 7 femtosecond (fs). For a single layer of graphene, the fast dynamic process at 275 ± 77 fs is due to the excitation of graphene excitons, and the slow process at 1.4 ± 0.3 picosecond (ps) is due to the plasmonic hot electron interaction with phonons of graphene. For the graphene-Ag nanowire hybrids, the time scale of the plasmon-induced hot electron transferring to graphene is 534 ± 108 fs, and the metal plasmon enhanced graphene plasmon is about 3.2 ± 0.8 ps in the VIS region. The graphene-Ag nanowire hybrids can be used for plasmon-driven chemical reactions. This graphene-mediated surface-enhanced Raman scattering substrate significantly increases the probability and efficiency of surface catalytic reactions co-driven by graphene-Ag nanowire hybridization, in comparison with reactions individually driven by monolayer graphene or single Ag nanowire. This implies that the graphene-Ag nanowire hybrids can not only lead to a significant accumulation of high-density hot electrons, but also significantly increase the plasmon-to-electron conversion efficiency, due to strong plasmon-exciton coupling.
Bis-biguanide dihydrochloride inhibits intracellular replication of M. tuberculosis and controls infection in mice
Authors: Shen Hongbo , Wang Feifei , Zeng Gucheng , Shen Ling , Cheng Han , Huang Dan , Wang Richard , Rong Lijun , Chen Zheng W.
Published: September 2016

While there is an urgent need to develop new and effective drugs for treatment of tuberculosis (TB) and multi-drug resistant TB (MDR-TB), repurposing FDA (U.S. Food and Drug Administration) -approved drugs for development of anti-TB agents may decrease time and effort from bench to bedside. Here, we employed host cell-based high throughput screening (HTS) assay to screen and characterize FDA-approved, off-patent library drugs for anti-Mycobacterium tuberculosis (MTB) activities. The cell-based HTS allowed us to identify an anti-cancer drug of bis-biguanide dihydrochloride (BBD) as potent anti-mycobacteria agent. Further characterization showed that BBD could inhibit intracellular and extracellular growth of M. smegmatis and slow-growing M. bovis BCG. BBD also potently inhibited replication of clinically-isolated MTB and MDR-TB strains. The proof-of-concept study showed that BBD treatment of MTB-infected mice could significantly decrease CFU counts in the lung and spleen. Notably, comparative evaluation showed that MTB CFU counts in BBD-treated mice were lower than those in rifampicin-treated mice. No apparent BBD side effects were found in BBD-treated mice. Thus, our findings support further studies to develop BBD as a new and effective drug against TB and MDR-TB.
Body mass index and psychiatric disorders: a Mendelian randomization study
Authors: Hartwig Fernando Pires , Bowden Jack , Loret de Mola Christian , Tovo-Rodrigues Luciana , Davey Smith George , Horta Bernardo Lessa
Published: September 2016

Obesity is a highly prevalent risk factor for cardiometabolic diseases. Observationalstudies suggest that obesity is associated with psychiatric traits, but causalinference from such studies has several limitations. We used two-sample Mendelianrandomization methods (inverse variance weighting, weighted median and MR-Eggerregression) to evaluate the association of body mass index (BMI) with threepsychiatric traits using data from the Genetic Investigation of AnthropometricTraits and Psychiatric Genomics consortia. Causal odds ratio estimates per1-standard deviation increment in BMI ranged from 0.88 (95% CI: 0.62; 1.25) to 1.23(95% CI: 0.65; 2.31) for bipolar disorder; 0.93 (0.78; 1.11) to 1.41 (0.87; 2.27)for schizophrenia; and 1.15 (95% CI: 0.92; 1.44) to 1.40 (95% CI: 1.03; 1.90) formajor depressive disorder. Analyses removing potentially influential SNPs suggestedthat the effect estimates for depression might be underestimated. Our findings donot support the notion that higher BMI increases risk of bipolar disorder andschizophrenia. Although the point estimates for depression were consistent in allsensitivity analyses, the overall statistical evidence was weak. However, the factthat SNP-depression associations were estimated in relatively small samples reducedpower to detect causal effects. This should be re-addressed when SNP-depressionassociations from larger studies become available.
Dual-color plasmonic enzyme-linked immunosorbent assay based on enzyme-mediated etching of Au nanoparticles
Authors: Guo Longhua , Xu Shaohua , Ma Xiaoming , Qiu Bin , Lin Zhenyu , Chen Guonan
Published: September 2016

Colorimetric enzyme-linked immunosorbent assay utilizing 3′-3-5′-5-tetramethylbenzidine(TMB) as the chromogenic substrate has been widely used in the hospital for the detection of all kinds of disease biomarkers. Herein, we demonstrate a strategy to change this single-color display into dual-color responses to improve the accuracy of visual inspection. Our investigation firstly reveals that oxidation state of 3′-3-5′-5-tetramethylbenzidine (TMB2+) can quantitatively etch gold nanoparticles. Therefore, the incorporation of gold nanoparticles into a commercial TMB-based ELISA kit could generate dual-color responses: the solution color varied gradually from wine red (absorption peak located at ~530 nm) to colorless, and then from colorless to yellow (absorption peak located at ~450 nm) with the increase amount of targets. These dual-color responses effectively improved the sensitivity as well as the accuracy of visual inspection. For example, the proposed dual-color plasmonic ELISA is demonstrated for the detection of prostate-specific antigen (PSA) in human serum with a visual limit of detection (LOD) as low as 0.0093 ng/mL.
Individual contributions of climate and vegetation change to soil moisture trends across multiple spatial scales
Authors: Feng Huihui
Published: September 2016

Climate and vegetation change are two dominating factors for soil moisture trend. However, their individual contributions remain unknown due to their complex interaction. Here, I separated their contributions through a trajectory-based method across the global, regional and local scales. Our results demonstrated that climate change accounted for 98.78% and 114.64% of the global drying and wetting trend. Vegetation change exhibited a relatively weak influence (contributing 1.22% and −14.64% of the global drying and wetting) because it occurred in a limited area on land. Regionally, the impact of vegetation change cannot be neglected, which contributed −40.21% of the soil moisture change in the wetting zone. Locally, the contributions strongly correlated to the local environmental characteristics. Vegetation negatively affected soil moisture trends in the dry and sparsely vegetated regions and positively in the wet and densely vegetated regions. I conclude that individual contributions of climate and vegetation change vary at the global, regional and local scales. Climate change dominates the soil moisture trends, while vegetation change acts as a regulator to drying or wetting the soil under the changing climate.
A low-salt diet increases the expression of renal sirtuin 1 through activation of the ghrelin receptor in rats
Authors: Yang Shao-Yu , Lin Shuei-Liong , Chen Yung-Ming , Wu Vin-Cent , Yang Wei-Shiung , Wu Kwan-Dun
Published: September 2016

Previous studies have shown that sirtuin 1 (Sirt1) is renoprotective; however, details regarding its distribution and functions in the kidney remain unknown. Here, we demonstrated that Sirt1 was mainly expressed in the tubulointerstitial cells of normal rat kidneys and was co-localized with aquaporin 2, indicating it may be involved in water/salt regulation. Renal Sirt1 expression increased in the non-glomerular cytoplasmic portion of the kidney after a 24-h fast, but no significant changes in Sirt1 expression occurred after water loading (50 mL/kg) or 24-h water deprivation. After consuming a low-salt (0.075%) or 60% calorie restriction diet for 7 days, Sirt1 expression in the rat kidney was significantly increased, whereas a high-salt (8%) diet did not change the level of Sirt1 expression. The low-salt diet also increased Sirt1 expression in the heart, muscle, brain, and fat tissues. The increased Sirt1 that was observed in rats on a low-salt diet was associated with increased ghrelin expression in the distal nephron, with both molecules exhibiting similar distribution patterns. An in vitro experiment suggested that ghrelin increases Sirt1 expression in cortical collecting duct cells by activating ghrelin receptors. Our study indicates that this ‘ghrelin-Sirt1 system’ may participate in regulating sodium reabsorption in the distal nephron.
Air pollution and venous thrombosis: a meta-analysis
Authors: Tang Liang , Wang Qing-Yun , Cheng Zhi-Peng , Hu Bei , Liu Jing-Di , Hu Yu
Published: September 2016

Exposure to air pollution has been linked to cardiovascular and respiratory disorders. However, the effect of air pollution on venous thrombotic disorders is uncertain. We performed a meta-analysis to assess the association between air pollution and venous thrombosis. PubMed, Embase, EBM Reviews, Healthstar, Global Health, Nursing Database, and Web of Science were searched for citations on air pollutants (carbon monoxide, sulfur dioxide, nitrogen dioxide, ozone, and particulate matters) and venous thrombosis. Using a random-effects model, overall risk estimates were derived for each increment of 10 μg/m3 of pollutant concentration. Of the 485 in-depth reviewed studies, 8 citations, involving approximately 700,000 events, fulfilled the inclusion criteria. All the main air pollutants analyzed were not associated with an increased risk of venous thrombosis (OR = 1.005, 95% CI = 0.998–1.012 for PM2.5; OR = 0.995, 95% CI = 0.984–1.007 for PM10; OR = 1.006, 95% CI = 0.994–1.019 for NO2). Based on exposure period and thrombosis location, additional subgroup analyses provided results comparable with those of the overall analyses. There was no evidence of publication bias. Therefore, this meta analysis does not suggest the possible role of air pollution as risk factor for venous thrombosis in general population.
Conductive framework of inverse opal structure for sulfur cathode in lithium-sulfur batteries
Authors: Jin Lu , Huang Xiaopeng , Zeng Guobo , Wu Hua , Morbidelli Massimo
Published: September 2016

As a promising cathode inheritor for lithium-ion batteries, the sulfur cathode exhibits very high theoretical volumetric capacity and energy density. In its practical applications, one has to solve the insulating properties of sulfur and the shuttle effect that deteriorates cycling stability. The state-of-the-art approaches are to confine sulfur in a conductive matrix. In this work, we utilize monodisperse polystyrene nanoparticles as sacrificial templates to build polypyrrole (PPy) framework of an inverse opal structure to accommodate (encapsulate) sulfur through a combined in situ polymerization and melting infiltration approach. In the design, the interconnected conductive PPy provides open channels for sulfur infiltration, improves electrical and ionic conductivity of the embedded sulfur, and reduces polysulfide dissolution in the electrolyte through physical and chemical adsorption. The flexibility of PPy and partial filling of the inverse opal structure endure possible expansion and deformation during long-term cycling. It is found that the long cycling stability of the cells using the prepared material as the cathode can be substantially improved. The result demonstrates the possibility of constructing a pure conductive polymer framework to accommodate insulate sulfur in ion battery applications.
Distribution behavior of superparamagnetic carbon nanotubes in an aqueous system
Authors: Bai Xue , Liu Yuqi , Yu Lu , Hua Zulin
Published: September 2016

This study investigates the distribution behavior of superparamagnetic multiwalled carbon nanotubes (SPM-MWCNTs) in an aqueous system containing Lake Tai sediment. Specifically, the effects of dissolved organic matter (DOM) and sediment on SPM-MWCNTs under various conditions and the interaction forms between them were evaluated through a modified mathematical model and characterization. The results showed that DOM can stabilize SPM-MWCNTs by providing sterically and electrostatically stable surfaces, even under high sodium concentrations. The fitting accuracy of the Freundlich adsorption isotherm is higher than that of the Langmuir adsorption isotherm. Therefore, the adsorption of SPM-MWCNT on the sediment should proceed through a multiple, complex and heterogeneous adsorption mechanism. Characterization analyses indicated that DOM may serve as a bridge for the inorganic adsorption between SPM-MWCNTs and sediment. This study is the first to investigate the distribution behavior of magnetite coated carbon nanotubes (CNTs), which simplified the separation and quantification considerably. The findings of this study will serve as a valuable reference for future studies of magnetic CNTs.
Role of Nesfatin-1 in the Reproductive Axis of Male Rat
Authors: Gao Xiaoxiao , Zhang Kaifa , Song Min , Li Xiumei , Luo Lei , Tian Yuan , Zhang Yunhai , Li Yunsheng , Zhang Xiaorong , Ling Yinghui , Fang Fugui , Liu Ya
Published: September 2016

Nesfatin-1 is an important molecule in the regulation of reproduction. However, its role in the reproductive axis in male animals remains to be understood. Here, we found that nesfatin-1 was mainly distributed in the arcuate nucleus (ARC), paraventricular nucleus (PVN), periventricular nucleus (PeN), and lateral hypothalamic area (LHA) of the hypothalamus; adenohypophysis and Leydig cells in male rats. Moreover, the concentrations of serum nesfatin-1 and its mRNA in hypothalamo-pituitary-gonadal axis (HPGA) vary with the age of the male rat. After intracerebroventricular injection of nesfatin-1, the hypothalamic genes for gonadotrophin releasing hormone (GnRH), kisspeptin (Kiss-1), pituitary genes for follicle-stimulate hormone β(FSHβ), luteinizing hormone β(LHβ), and genes for testicular steroidogenic acute regulatory (StAR) expression levels were decreased significantly. Nesfatin-1 significantly increased the expression of genes for 3β-hydroxysteroid dehydrogenase (3β-HSD), 17β-hydroxysteroid dehydrogenase (17β-HSD), and cytochrome P450 cleavage (P450scc) in the testis of pubertal rats, but their levels decreased in adult rats (P < 0.05), along with the serum FSH, LH, and testosterone (T) concentrations. After nesfatin-1 addition in vitro, T concentrations of the supernatant were significantly higher than that in the control group. These results were suggestive of the role of nesfatin-1 in the regulation of the reproductive axis in male rats.
Gene expression clines reveal local adaptation and associated trade-offs at a continental scale
Authors: Porcelli Damiano , Westram Anja M. , Pascual Marta , Gaston Kevin J. , Butlin Roger K. , Snook Rhonda R.
Published: September 2016

Local adaptation, where fitness in one environment comes at a cost in another, should lead to spatial variation in trade-offs between life history traits and may be critical for population persistence. Recent studies have sought genomic signals of local adaptation, but often have been limited to laboratory populations representing two environmentally different locations of a species’ distribution. We measured gene expression, as a proxy for fitness, in males of Drosophila subobscura, occupying a 20° latitudinal and 11 °C thermal range. Uniquely, we sampled six populations and studied both common garden and semi-natural responses to identify signals of local adaptation. We found contrasting patterns of investment: transcripts with expression positively correlated to latitude were enriched for metabolic processes, expressed across all tissues whereas negatively correlated transcripts were enriched for reproductive processes, expressed primarily in testes. When using only the end populations, to compare our results to previous studies, we found that locally adaptive patterns were obscured. While phenotypic trade-offs between metabolic and reproductive functions across widespread species are well-known, our results identify underlying genetic and tissue responses at a continental scale that may be responsible for this. This may contribute to understanding population persistence under environmental change.
Hydroxylated-graphene quantum dots induce cells senescence in both p53-dependent and -independent manner
Authors: Tian Xin , Xiao Bei-Bei , Wu Anqing , Yu Lan , Zhou Jundong , Wang Yu , Wang Nan , Guan Hua , Shang Zeng-Fu
Published: September 2016

OH-GQDs exhibit evident cytotoxicity on lung carcinoma cellsviainducing cells senescence in both p53-dependent and -independent manner.