bluuebunny/crossref_metadata_2025 huggingface dataset:
Effect of Adding Phragmites-Australis Fiber on the Mechanical Properties and Volume Stability of Mortar
Authors: Khatib Jamal , Ramadan Rawan , Ghanem Hassan , Elkordi Adel
Published: January 2024

In this research, the investigation focuses on the influence of Phragmites-Australis (PA) fibers on the mechanical properties and volume stability of mortar. A total of four mixtures were employed with varying amounts of locally sourced PA fibers ranging from 0.5% to 2% (by volume). Testing includes flexural strength, compressive strength, chemical shrinkage, drying shrinkage, autogenous shrinkage, and expansion. The findings show that the use of PA fibers caused a reduction in compressive and flexural strength. However, beyond 3 days of curing, an increase in flexural strength ranging from 7 to 21% was observed at 1% PA fiber compared to the control sample. Furthermore, the addition of PA fibers up to 2% effectively mitigates the dimensional stability of mortar samples. A gradual decrease in chemical, autogenous, and drying shrinkage as well as expansion occurs in mortar samples when % of PA fibers increases. At 180 days, this reduction was 37, 19, 15 and 20% in chemical shrinkage, autogenous shrinkage, drying shrinkage, and expansion, respectively, for a mix containing 2% PA fiber. Additionally, a hyperbolic model is proposed to predict the variation of length change with time. Also, a strong relationship is observed between chemical shrinkage and other length change parameters. Consequently, the environmentally friendly utilization of PA fibers demonstrates its potential to significantly enhance mortar durability in construction applications.
Estimating Cognitive Ability in the Wild: Validation of a Detour Test Paradigm Using a Cichlid Fish (Neolamprologus pulcher)
Authors: Jungwirth Arne , Horsfield Anna , Nührenberg Paul , Fischer Stefan
Published: January 2024

Cognitive abilities vary within and among species, and several hypotheses have been proposed to explain this variation. Two of the most prominent hypotheses regarding the evolution of cognition link increased social and habitat complexity with advanced cognitive abilities. Several studies have tested predictions derived from these two hypotheses, but these were rarely conducted under natural conditions with wild animals. However, this is of particular importance if we aim to link cognitive abilities with fitness-relevant factors to better understand the evolution of cognition. The biggest hurdle to assessing cognition in the wild is to find a suitable setup that is easy to use under field conditions. Here, we set out to evaluate an extremely simple test of cognitive ability for use with a broad range of aquatic animals in their natural habitat. We did so by developing a detour test paradigm in which fish had to detour a clear obstacle to reach a food reward. By altering the difficulty of the task, we confirmed that this setup is a valid test of cognitive abilities in wild groups of a Lake Tanganyika cichlid, Neolamprologus pulcher. Subsequently, we probed specific predictions from the two major hypotheses regarding cognitive evolution using the most difficult test configuration. Specifically, we tested the variation in cognitive abilities among groups of different sizes occupying habitats of varying complexity. We find mixed support for both hypotheses, but we hope that our work inspires future investigations on the evolution of cognition in Lake Tanganyika cichlids.
Review of the Accuracy of Satellite Remote Sensing Techniques in Identifying Coastal Aquaculture Facilities
Authors: Chen Ao , Lv Zehua , Zhang Junbo , Yu Gangyi , Wan Rong
Published: January 2024

The predominant form of aquaculture is the facility fishery, which is also subject to significant impacts from marine disasters. Conducting research on the extraction of facility fishery areas based on remote sensing technology is crucial to efficiently comprehending the configuration of coastal culture patterns and to establishing scientifically sound plans for managing and administering these areas. The extensive dispersion of facility fishery areas in coastal regions poses a challenge to the conduction of comprehensive field surveys. The utilization of satellite remote sensing images for information extraction has emerged as a significant area of research in the fields of coastal fishery and ecological environment. This study provides a systematic description of the current research status of coastal fishery area extraction methods using remote sensing technology from 2000 to 2022 reported in the literature. The methods discussed include the visual interpretation method, image element-based classification, object-based classification, supervised classification, unsupervised classification, and neural network classification. The extraction accuracy of each method in the coastal facility fishery area is evaluated, and the advantages and disadvantages of these methods, as well as their limitations and existing problems, are analyzed in detail, to construct a reference framework for the investigation of the high-precision extraction of facility fishery areas from satellite remote sensing images.
Selenium Protects Yellow Catfish (Tachysurus fulvidraco) from Low-Temperature Damage via the Perspective Analysis of Metabolomics and Intestinal Microbes
Authors: Hu Junru , Wang Lei , Wang Guoxia , Zhao Hongxia , Lu Huijie , Peng Kai , Huang Wen , Liu Zhenxing , Liu Ding , Sun Yuping
Published: January 2024

The effects of selenium supplementation in Tachysurus fulvidraco (T. fulvidraco) on low-temperature stress are not known. In this study, 280 healthy T. fulvidraco were divided into two groups, the G0 group (a control group) and the T0 group (a selenium treatment group on a 0.22 mg/kg diet), for a 6-week feeding time. Then, low-temperature stress (water temperature dropped from 26 to 13 °C, with a rate of 1 °C/h) was administered after that. The feeding results showed that selenium increased the percent weight gain (PWG), specific growth rate (SGR), and survival rate (SR) of T. fulvidraco and decreased the feed conversion rate (FCR), but these differences were not significant (p > 0.05). Under low temperatures, selenium still has no significant effects on antioxidant indexes such as glutathione peroxidase (GSH-Px) activity, superoxide dismutase (SOD) activity, and malondialdehyde (MDA) content in serum (p > 0.05). However, metabolomic analysis revealed that selenium caused changes in lipids and lipid-like molles, organic acids and their derivatives, and fatty acyls. Choline, linoleic acid, and glycerophospholipid metabolism pathways; d-arginine and d-ornithine metabolism; valine, leucine, and isoleucine degradation; and biosynthesis pathways, as well as pyrimidine metabolism pathways, were activated to produce these metabolites to combat against this stress. In addition, selenium increased the diversity of intestinal microbes in T. fulvidraco and decreased the relative abundance of Plesiomonas. However, the combined analysis showed the intestinal microbe changes did not affect metabolite production. In summary, selenium activated lipid, carbohydrate, and amino acid metabolism for energy substance provision, reduced the oxidation and production of other harmful substances, and increased the intestinal microbe diversity of T. fulvidraco to improve resistance to low-temperature stress.
Rethinking Underwater Crab Detection via Defogging and Channel Compensation
Authors: Sun Yueping , Yuan Bikang , Li Ziqiang , Liu Yong , Zhao Dean
Published: January 2024

Crab aquaculture is an important component of the freshwater aquaculture industry in China, encompassing an expansive farming area of over 6000 km2 nationwide. Currently, crab farmers rely on manually monitored feeding platforms to count the number and assess the distribution of crabs in the pond. However, this method is inefficient and lacks automation. To address the problem of efficient and rapid detection of crabs via automated systems based on machine vision in low-brightness underwater environments, a two-step color correction and improved dark channel prior underwater image processing approach for crab detection is proposed in this paper. Firstly, the parameters of the dark channel prior are optimized with guided filtering and quadtrees to solve the problems of blurred underwater images and artificial lighting. Then, the gray world assumption, the perfect reflection assumption, and a strong channel to compensate for the weak channel are applied to improve the pixels of red and blue channels, correct the color of the defogged image, optimize the visual effect of the image, and enrich the image information. Finally, ShuffleNetV2 is applied to optimize the target detection model to improve the model detection speed and real-time performance. The experimental results show that the proposed method has a detection rate of 90.78% and an average confidence level of 0.75. Compared with the improved YOLOv5s detection results of the original image, the detection rate of the proposed method is increased by 21.41%, and the average confidence level is increased by 47.06%, which meets a good standard. This approach could effectively build an underwater crab distribution map and provide scientific guidance for crab farming.
Modeling and Analysis of Caputo–Fabrizio Definition-Based Fractional-Order Boost Converter with Inductive Loads
Authors: Yu Donghui , Liao Xiaozhong , Wang Yong
Published: January 2024

This paper proposes a modeling and analysis method for a Caputo–Fabrizio (C-F) definition-based fractional-order Boost converter with fractional-order inductive loads. The proposed method analyzes the system characteristics of a fractional-order circuit with three state variables. Firstly, this paper constructs a large signal model of a fractional-order Boost converter by taking advantage of the state space averaging method, providing accurate analytical solutions for the quiescent operating point and the ripple parameters of the circuit with three state variables. Secondly, this paper constructs a small signal model of the C-F definition-based fractional-order Boost converter by small signal linearization, providing the transfer function of the fractional-order system with three state variables. Finally, this paper conducts circuit-oriented simulation experiments where the steady-state parameters and the transfer function of the circuit are obtained, and then the effect of the order of capacitor, induced inductor, and load inductor on the quiescent operating point and ripple parameters is analyzed. The experimental results show that the simulation results are consistent with those obtained by the proposed mathematical model and that the three fractional orders in the fractional model with three state variables have a significant impact on the DC component and steady-state characteristics of the fractional-order Boost converter. In conclusion, the proposed mathematical model can more comprehensively analyze the system characteristics of the C-F definition-based fractional-order Boost converter with fractional-order inductive loads, benefiting the circuit design of Boost converters.
Preparation and Performance Evaluation of Ionic Liquid Copolymer Shale Inhibitor for Drilling Fluid Gel System
Authors: Dai Zhiwen , Sun Jinsheng , Xiu Zhuoyang , Huang Xianbin , Lv Kaihe , Liu Jingping , Sun Yuanwei , Dong Xiaodong
Published: January 2024

An inhibitor that can effectively inhibit shale hydration is necessary for the safe and efficient development of shale gas. In this study, a novel ionic liquid copolymer shale inhibitor (PIL) was prepared by polymerizing the ionic liquid monomers 1-vinyl-3-aminopropylimidazolium bromide, acrylamide, and methacryloyloxyethyl trimethyl ammonium chloride. The chemical structure was characterized using fourier transform infrared spectroscopy (FT-IR) and hydrogen-nuclear magnetic resonance (H-NMR), and the inhibition performance was evaluated using the inhibition of slurrying test, bentonite flocculation test, linear expansion test, and rolling recovery test. The experimental results showed that bentonite had a linear expansion of 27.9% in 1 wt% PIL solution, 18% lower than that in the polyether amine inhibitor. The recovery rate of shale in 1 wt% PIL was 87.4%. The ionic liquid copolymer could work synergistically with the filtrate reducer, reducing filtration loss to 7.2 mL with the addition of 1%. Mechanism analysis showed that PIL adsorbed negatively charged clay particles through cationic groups, which reduced the electrostatic repulsion between particles. Thus, the stability of the bentonite gel systems was destroyed, and the hydration dispersion and expansion of bentonite were inhibited. PIL formed a hydrophobic film on the surface of clay and prevented water from entering into the interlayer of clay. In addition, PIL lowered the surface tension of water, which prevented the water from intruding into the rock under the action of capillary force. These are also the reasons for the superior suppression performance of PIL.
Effect of High-Pressure Homogenization on the Properties and Structure of Cold-Induced Chiba Tofu Gel in Soy Protein Isolate
Authors: Zheng Li , Regenstein Joe M. , Wang Zhongjiang
Published: January 2024

In the actual production process of soy protein isolate (SPI), most of the homogeneous operating pressure is controlled below 20 MPa due to the consideration of production safety and the limitation of the pressure control capability of homogeneous equipment. In order to improve the functional properties of SPI and adapt it to actual production, the effects of different homogeneous pressures (4, 8, 10, 12, and 14 MPa) on the structure and gel properties of SPI were studied from the perspective of production control. Compared to the control group, the modified SPI improved the hardness, springiness, cohesiveness, chewiness, and water holding capacity (WHC) of the protein gel (p < 0.05). Rheological analysis shows that both G′ and G″ increase with increasing frequency, reaching a maximum at 12 MPa. The gel intermolecular force results show that the disulfide bond, hydrophobic interaction, and non-disulfide bond are important molecular forces for gel formation. The particle size distribution uniformity of modified SPI was high, and scanning electron microscopy (SEM) analysis showed that the protein gel with a continuous uniform and dense network structure could be formed by high-pressure homogeneous modification. Overall, high-pressure homogenization technology has the potential to improve SPI gel structure and WHC, and 12 MPa modified SPI gel has the most significant effect.
Inherited Optic Neuropathies: Real-World Experience in the Paediatric Neuro-Ophthalmology Clinic
Authors: Gilhooley Michael James , Raoof Naz , Yu-Wai-Man Patrick , Moosajee Mariya
Published: January 2024

Inherited optic neuropathies affect around 1 in 10,000 people in England; in these conditions, vision is lost as retinal ganglion cells lose function or die (usually due to pathological variants in genes concerned with mitochondrial function). Emerging gene therapies for these conditions have emphasised the importance of early and expedient molecular diagnoses, particularly in the paediatric population. Here, we report our real-world clinical experience of such a population, exploring which children presented with the condition, how they were investigated and the time taken for a molecular diagnosis to be reached. A retrospective case-note review of paediatric inherited optic neuropathy patients (0–16 years) in the tertiary neuro-ophthalmology service at Moorfields Eye Hospital between 2016 and 2020 identified 19 patients. Their mean age was 9.3 ± 4.6 (mean ± SD) years at presentation; 68% were male, and 32% were female; and 26% had comorbidities, with diversity of ethnicity. Most patients had undergone genetic testing (95% (n = 18)), of whom 43% (n = 8) received a molecular diagnosis. On average, this took 54.8 ± 19.5 weeks from presentation. A cerebral MRI was performed in 70% (n = 14) and blood testing in 75% (n = 15) of patients as part of their workup. Continual improvement in the investigative pathways for inherited optic neuropathies will be paramount as novel therapeutics become available.
Integrated Transcriptomics and Metabolomics Analysis of Two Maize Hybrids (ZD309 and XY335) under Heat Stress at the Flowering Stage
Authors: Zhao Pu , Sun Lei , Zhang Siqi , Jiao Bo , Wang Jiao , Ma Chunhong
Published: January 2024

High temperature around flowering has a serious impact on the growth and development of maize. However, few maize genes related to flowering under heat stress have been confirmed, and the regulatory mechanism is unclear. To reveal the molecular mechanism of heat tolerance in maize, two maize hybrids, ZD309 and XY335, with different heat resistance, were selected to perform transcriptome and metabolomics analysis at the flowering stage under heat stress. In ZD309, 314 up-regulated and 463 down-regulated differentially expressed genes (DEGs) were detected, while 168 up-regulated and 119 down-regulated DEGs were identified in XY335. By comparing the differential gene expression patterns of ZD309 and XY335, we found the “frontloaded” genes which were less up-regulated in heat-tolerant maize during high temperature stress. They included heat tolerance genes, which may react faster at the protein level to provide resilience to instantaneous heat stress. A total of 1062 metabolites were identified via metabolomics analysis. Lipids, saccharides, and flavonoids were found to be differentially expressed under heat stress, indicating these metabolites’ response to high temperature. Our study will contribute to the identification of heat tolerance genes in maize, therefore contributing to the breeding of heat-tolerant maize varieties.
The Secret Lives of Bouki: Louisiana’s Creolized Folkloresque
Authors: Cooper Rich Paul
Published: January 2024

This article historicizes the character of Bouki in the context of Creole Louisiana, showing how the story of Bouki has evolved to become the story of Kouri-Vini, Louisiana’s native and endangered Creole language. This historicization takes place in three distinct periods; those periods are defined by their relation to Kouri-Vini. The first period aligns with the Antebellum period; the second aligns with the early 20th century; and the final coincides with the present day. Moving across these periods, Bouki finds himself demoted, at which point he enters the ‘creolized folkloresque.’ The folkloresque is a larger mosaic of folkloric forms detached from the material conditions of their production and available to popular culture; for the folkloresque to be creolized designates the same process but under vastly unequal social and material conditions. In short, Bouki enters the creolized folkloresque, becoming a folkoresque figure available to all who find themselves subject to creolized conditions. In the pre-American part of Louisiana’s history, creolized conditions included slavery and colonization; post-Americanization, linguistic discrimination plays an outsized role. Where such conditions persist in Louisiana, there Bouki can be found.
The Impact of 8 Weeks of Combined Physical Exercise Training on SIRT3 and mTOR in Lymphocytes, and on Lipid Peroxidation
Authors: Soares Jorge Pinto , Cardoso Ricardo , Almeida Vanessa , Pereira Ana Fátima , Silva Amélia M. , Mota Maria Paula
Published: January 2024

The sirtuins (SIRT) protein family and the mechanistic/mammalian target of rapamycin (mTOR) are intracellular molecules that have been involved in the regulation of several biological processes, as well as in various aging-related processes. This pilot study, in small scale, aimed to analyze the effects of an 8-week physical exercise program on SIRT3 and mTOR levels in lymphocytes, as well as on lipid peroxidation in middle aged and older men. A total of 9 participants aged between 56 and 73 years were enrolled in an 8-week physical exercise program comprising cardiovascular and high-intensity interval training. The program involved three sessions per week, each lasting 45–60 min, conducted on non-consecutive days. Tests were conducted before and after the experimental period (pre- and post-training). Assessments included a vertical jump, 20 m velocity, ball throwing, and an aerobic capacity test. Lipid peroxidation (MDA) was measured in plasma as an oxidative stress biomarker. Additionally, sirtuin 3 (SIRT3/β-actin) and mTOR (mTOR/β-actin) levels were measured in isolated lymphocytes extracted from venous blood. Following the exercise training period, our results demonstrated a significant improvement in aerobic capacity (pre-training: 615.4 ± 45.3 m; post-training: 687.2 ± 34.6 m; t = −2.521; p = 0.012) and 20 m velocity (pre-training: 4.6 ± 0.5 s; post-training: 4.3 ± 0.3 s; t = −2.023; p = 0.04). Concerning blood variables, there was a significant decrease in mTOR levels (pre-training: 0.857 ± 0.593; post-training: 0.214 ± 0.097; t = −2.547; p = 0.011), while no changes were observed in SIRT3 (pre-training: 0.608 ± 0.404; post-training: 0.516 ± 0.390; t = 0.533; p = 0.594) and MDA (pre-training: 8420 ± 4615; post-training: 8800 ± 3163; t = −0.533; p = 0.594). The notable reduction in mTOR levels in lymphocytes following the 8-week physical exercise program suggests a potential role of exercise in modulating immune cell dynamics, particularly in middle-aged and older individuals. Furthermore, the exercise regimen resulted in improvements in physical function, including enhanced aerobic capacity and walking velocity.
Role of Two Transcription Factors (TGA 1a and TGA 2.1) in the Mi-1-Mediated Resistance of Tomato to the Root-Knot Nematode Meloidogyne javanica
Authors: Pascual Susana , Emiliozzi Mariana , Nombela Gloria
Published: January 2024

The Mi-1 gene in tomato confers resistance against insects and nematodes. The mechanisms involved in the functioning of this gene are not completely known, and they differ depending on the damaging organism (insect or nematode). Transcription factors (TF) from different families are essential for plant defence, and the TGAs, members of the Basic Leucine Zipper (bZIP) TF family, are relevant in different pathosystems. In this work, the implication of TGA 1a and TGA 2.1 genes in Mi-1 resistance against the root-knot nematode Meloidogyne javanica was studied, by virus-induced gene silencing (VIGS) based on Tobacco rattle virus (TRV). Results showed that infiltration with the empty TRV vector did not alter Mi-1-mediated resistance, confirming the adequacy of this method. Silencing of the TGA 1a gene resulted in a decrease in resistance to M. javanica, as the numbers of egg masses were significantly higher than those on non-silenced plants. This decrease in resistance was similar to that caused by silencing the Mi-1 gene. However, the silencing of the TGA 2.1 gene caused a limited loss of resistance, with infestation levels intermediate between those of resistant and susceptible varieties. Thus, our results demonstrate the requirement of TGA 1a in Mi-1-mediated resistance to M. javanica, while the incomplete silencing of TGA 2.1 impaired a specific determination of its role.
Evaluation of the Allelopathic Activity of Aqueous and Methanol Extracts of Heliotropium indicum Leaves and Roots on Eight Cucurbit Crops
Authors: Akter Pervin , Siddiqua Tahera , Begum Rabeya , Ahmed A. M. Abu
Published: January 2024

Allelopathy, a biological phenomenon where plants release chemicals that influence the growth and development of neighboring flora, offers potential natural alternatives for weed management in agriculture. This study investigated the allelopathic effects of Heliotropium indicum leaf and root extracts on the germination, growth, and biochemical parameters of eight cucurbit crops. Results demonstrated that H. indicum extracts generally inhibited seed germination across all cucurbit species, with aqueous extracts showing a stronger effect than methanol extracts in Lagenaria siceraria at 10.66 ± 0.46% (p < 0.001). The treatment also variably affected shoot and root growth, indicating both inhibitory and stimulatory actions, depending on the crop species and extract type. For instance, in methanol extract treatments, Benincasa hispida’s shoot length was significantly reduced, compared to the control, at 2.1 ± 0.14 cm (p < 0.001). Notably, aqueous leaf extracts enhanced chlorophyll content more effectively than root extracts, suggesting a potential application as a biostimulant, to improve photosynthetic efficiency in certain species, for example, Momordica charantia (p < 0.05). The study further explored the antioxidative potential of the extracts by measuring MDA levels, a biomarker for oxidative stress. MDA levels increased significantly across all species in response to both types of extracts, indicating oxidative stress (L. siceraria p < 0.05). These findings suggest the potential of H. indicum extracts as natural herbicides and biostimulants, though their effects are species-specific and dependent on concentration. This research contributes to understanding the complex interactions in plant allelopathy, and highlights the potential of plant-derived extracts in sustainable agriculture.
Genome-Wide Identification of MYB Transcription Factors and Their Function on Floral Volatile Compounds Biosynthesis in Antirrhinum majus L.
Authors: Song Xiaohui , Shi Senbao , Kong Yulai , Wang Fengyi , Dong Shaorong , Ma Chong , Chen Longqing , Qiao Zhenglin
Published: January 2024

The v-MYB avivan myoblastsis virus oncogene homolog (MYB) family is the largest gene family of the transcription factor in plants, involved in plant growth and development, secondary metabolism and resistance to biotic/abiotic stress. Antirrhinum majus (snapdragon) is an ideal material for studying ornamental traits. Nevertheless, there has been no systematic investigation into the AmMYB family of snapdragons. In this study, we identified a total of 162 members of the AmMYB gene family in snapdragons. Gene structure analysis showed that the AmMYB family within the same subgroup had a similar structure and motifs. Analysis of gene duplication events revealed that the amplification of the AmMYB family was driven by whole-genome duplication (WGD) and dispersed duplication. The analysis of cis-acting elements in the promoter region of AmMYB genes reveals a collaborative involvement of light-responsive growth and development elements, stress resistance elements, and hormone-responsive elements jointly participating in the regulation of the AmMYB gene. Collinearity analysis demonstrates significant functional distinctions between AmMYB and monocotyledonous plants. The classification of AmMYB members results in 3 main subgroups with 36 smaller subgroups. All AmMYB genes are distributed across all eight chromosomes, with no apparent correlation between subfamily distribution and chromosome length. Through phylogenetic analysis and RNA-seq analysis, we have identified 9 R2R3-MYB genes that potentially play a role in the regulation of floral volatile organic compounds (FVOCs) biosynthesis. Their expression patterns were verified by qRT-PCR experiments. This study establishes a robust foundation for further investigations into the functionality of AmMYB genes and their molecular mechanisms underlying FVOC biosynthesis in snapdragons.
Two-Photon and Multiphoton Microscopy in Anterior Segment Diseases of the Eye
Authors: Hong Merrelynn , Chong Shu Zhen , Goh Yun Yao , Tong Louis
Published: January 2024

Two-photon excitation microscopy (TPM) and multiphoton fluorescence microscopy (MPM) are advanced forms of intravital high-resolution functional microscopy techniques that allow for the imaging of dynamic molecular processes and resolve features of the biological tissues of interest. Due to the cornea’s optical properties and the uniquely accessible position of the globe, it is possible to image cells and tissues longitudinally to investigate ocular surface physiology and disease. MPM can also be used for the in vitro investigation of biological processes and drug kinetics in ocular tissues. In corneal immunology, performed via the use of TPM, cells thought to be intraepithelial dendritic cells are found to resemble tissue-resident memory T cells, and reporter mice with labeled plasmacytoid dendritic cells are imaged to understand the protective antiviral defenses of the eye. In mice with limbal progenitor cells labeled by reporters, the kinetics and localization of corneal epithelial replenishment are evaluated to advance stem cell biology. In studies of the conjunctiva and sclera, the use of such imaging together with second harmonic generation allows for the delineation of matrix wound healing, especially following glaucoma surgery. In conclusion, these imaging models play a pivotal role in the progress of ocular surface science and translational research.
miRNAs in Heart Development and Disease
Authors: Lozano-Velasco Estefania , Inácio José Manuel , Sousa Inês , Guimarães Ana Rita , Franco Diego , Moura Gabriela , Belo José António
Published: January 2024

Cardiovascular diseases (CVD) are a group of disorders that affect the heart and blood vessels. They include conditions such as myocardial infarction, coronary artery disease, heart failure, arrhythmia, and congenital heart defects. CVDs are the leading cause of death worldwide. Therefore, new medical interventions that aim to prevent, treat, or manage CVDs are of prime importance. MicroRNAs (miRNAs) are small non-coding RNAs that regulate gene expression at the posttranscriptional level and play important roles in various biological processes, including cardiac development, function, and disease. Moreover, miRNAs can also act as biomarkers and therapeutic targets. In order to identify and characterize miRNAs and their target genes, scientists take advantage of computational tools such as bioinformatic algorithms, which can also assist in analyzing miRNA expression profiles, functions, and interactions in different cardiac conditions. Indeed, the combination of miRNA research and bioinformatic algorithms has opened new avenues for understanding and treating CVDs. In this review, we summarize the current knowledge on the roles of miRNAs in cardiac development and CVDs, discuss the challenges and opportunities, and provide some examples of recent bioinformatics for miRNA research in cardiovascular biology and medicine.
Low-Density Neutrophils Contribute to Subclinical Inflammation in Patients with Type 2 Diabetes
Authors: Dumont Benjamin L. , Neagoe Paul-Eduard , Charles Elcha , Villeneuve Louis , Tardif Jean-Claude , Räkel Agnès , White Michel , Sirois Martin G.
Published: January 2024

Type 2 diabetes (T2D) is characterized by low-grade inflammation. Low-density neutrophils (LDNs) represent normally less than 2% of total neutrophils but increase in multiple pathologies, releasing inflammatory cytokines and neutrophil extracellular traps (NETs). We assessed the count and role of high-density neutrophils (HDNs), LDNs, and NET-related activities in patients with T2D. HDNs and LDNs were purified by fluorescence-activated cell sorting (FACS) and counted by flow cytometry. Circulating inflammatory and NETs biomarkers were measured by ELISA (Enzyme Linked Immunosorbent Assay). NET formation was quantified by confocal microscopy. Neutrophil adhesion onto a human extracellular matrix (hECM) was assessed by optical microscopy. We recruited 22 healthy volunteers (HVs) and 18 patients with T2D. LDN counts in patients with diabetes were significantly higher (160%), along with circulating NETs biomarkers (citrullinated H3 histone (H3Cit), myeloperoxidase (MPO), and MPO-DNA (137%, 175%, and 69%, respectively) versus HV. Circulating interleukins (IL-6 and IL-8) and C-Reactive Protein (CRP) were significantly increased by 117%, 171%, and 79%, respectively, in patients compared to HVs. Isolated LDNs from patients expressed more H3Cit, MPO, and NETs, formed more NETs, and adhered more on hECM compared to LDNs from HVs. Patients with T2D present higher levels of circulating LDN- and NET-related biomarkers and associated pro-inflammatory activities.
Functional and Morphological Differences of Muscle Mitochondria in Chronic Fatigue Syndrome and Post-COVID Syndrome
Authors: Bizjak Daniel Alexander , Ohmayer Birgit , Buhl Jasmine Leonike , Schneider Elisabeth Marion , Walther Paul , Calzia Enrico , Jerg Achim , Matits Lynn , Steinacker Jürgen Michael
Published: January 2024

Patients suffering from chronic fatigue syndrome (CFS) or post-COVID syndrome (PCS) exhibit a reduced physiological performance capability. Impaired mitochondrial function and morphology may play a pivotal role. Thus, we aimed to measure the muscle mitochondrial oxidative phosphorylation (OXPHOS) capacity and assess mitochondrial morphology in CFS and PCS patients in comparison to healthy controls (HCs). Mitochondrial OXPHOS capacity was measured in permeabilized muscle fibers using high-resolution respirometry. Mitochondrial morphology (subsarcolemmal/intermyofibrillar mitochondrial form/cristae/diameter/circumference/area) and content (number and proportion/cell) were assessed via electron microscopy. Analyses included differences in OXPHOS between HC, CFS, and PCS, whereas comparisons in morphology/content were made for CFS vs. PCS. OXPHOS capacity of complex I, which was reduced in PCS compared to HC. While the subsarcolemmal area, volume/cell, diameter, and perimeter were higher in PCS vs. CFS, no difference was observed for these variables in intermyofibrillar mitochondria. Both the intermyofibrillar and subsarcolemmal cristae integrity was higher in PCS compared to CFS. Both CFS and PCS exhibit increased fatigue and impaired mitochondrial function, but the progressed pathological morphological changes in CFS suggest structural changes due to prolonged inactivity or unknown molecular causes. Instead, the significantly lower complex I activity in PCS suggests probably direct virus-induced alterations.
Chicken Interferon-Alpha and -Lambda Exhibit Antiviral Effects against Fowl Adenovirus Serotype 4 in Leghorn Male Hepatocellular Cells
Authors: Lai Jinyu , He Xingchen , Zhang Rongjie , Zhang Limei , Chen Libin , He Fengping , Li Lei , Yang Liangyu , Ren Tao , Xiang Bin
Published: January 2024

Hydropericardium hepatitis syndrome (HHS) is primarily caused by fowl adenovirus serotype 4 (FAdV-4), causing high mortality in chickens. Although vaccination strategies against FAdV-4 have been adopted, HHS still occurs sporadically. Furthermore, no effective drugs are available for controlling FAdV-4 infection. However, type I and III interferon (IFN) are crucial therapeutic agents against viral infection. The following experiments were conducted to investigate the inhibitory effect of chicken IFN against FadV-4. We expressed recombinant chicken type I IFN-α (ChIFN-α) and type III IFN-λ (ChIFN-λ) in Escherichia coli and systemically investigated their antiviral activity against FAdV-4 infection in Leghorn male hepatocellular (LMH) cells. ChIFN-α and ChIFN-λ dose dependently inhibited FAdV-4 replication in LMH cells. Compared with ChIFN-λ, ChIFN-α more significantly inhibited viral genome transcription but less significantly suppressed FAdV-4 release. ChIFN-α- and ChIFN-λ-induced IFN-stimulated gene (ISG) expression, such as PKR, ZAP, IRF7, MX1, Viperin, IFIT5, OASL, and IFI6, in LMH cells; however, ChIFN-α induced a stronger expression level than ChIFN-λ. Thus, our data revealed that ChIFN-α and ChIFN-λ might trigger different ISG expression levels, inhibiting FAdV-4 replication via different steps of the FAdV-4 lifecycle, which furthers the potential applications of IFN antiviral drugs in chickens.
Niemann–Pick Type C2 Proteins in Aedes aegypti: Molecular Modelling and Prediction of Their Structure–Function Relationships
Authors: Thambi Prathigna Jaishankar , Modahl Cassandra M. , Kini R. Manjunatha
Published: January 2024

Aedes aegypti is a major vector that transmits arboviruses through the saliva injected into the host. Salivary proteins help in uninterrupted blood intake and enhance the transmission of pathogens. We studied Niemann–Pick Type C2 (NPC2) proteins, a superfamily of saliva proteins that play an important role in arbovirus infections. In vertebrates, a single conserved gene encodes for the NPC2 protein that functions in cholesterol trafficking. Arthropods, in contrast, have several genes that encode divergent NPC2 proteins. We compared the sequences of 20 A. aegypti NPC2 proteins to the cholesterol-binding residues of human and bovine, and fatty-acid-binding residues of ant NPC2 protein. We identified four mosquito NPC2 proteins as potential sterol-binding proteins. Two of these proteins (AAEL006854 and/or AAEL020314) may play a key role in ecdysteroid biosynthesis and moulting. We also identified one mosquito NPC2 protein as a potential fatty-acid-binding protein. Through molecular modelling, we predicted the structures of the potential sterol- and fatty-acid-binding proteins and compared them to the reference proteins.
Metabonomics and Transcriptomic Analysis of Free Fatty Acid Synthesis in Seedless and Tenera Oil Palm
Authors: Wei Lu , Yang Cheng , John Martin Jerome Jeyakumar , Li Rui , Zhou Lixia , Cheng Shuanghong , Cao Hongxing , Liu Xiaoyu
Published: January 2024

Oil palm, a tropical woody oil crop, is widely used in food, cosmetics, and pharmaceuticals due to its high production efficiency and economic value. Palm oil is rich in free fatty acids, polyphenols, vitamin E, and other nutrients, which are beneficial for human health when consumed appropriately. Therefore, investigating the dynamic changes in free fatty acid content at different stages of development and hypothesizing the influence of regulatory genes on free fatty acid metabolism is crucial for improving palm oil quality and accelerating industry growth. LC-MS/MS is used to analyze the composition and content of free fatty acids in the flesh after 95 days (MS1 and MT1), 125 days (MS2 and MT2), and 185 days (MS3 and MT3) of Seedless (MS) and Tenera (MT) oil palm species fruit pollination. RNA-Seq was used to analyze the expression of genes regulating free fatty acid synthesis and accumulation, with differences in genes and metabolites mapped to the KEGG pathway map using the KEGG (Kyoto encyclopedia of genes and genomes) enrichment analysis method. A metabolomics study identified 17 types of saturated and 13 types of unsaturated free fatty acids during the development of MS and MT. Transcriptomic research revealed that 10,804 significantly different expression genes were acquired in the set differential gene threshold between MS and MT. The results showed that FabB was positively correlated with the contents of three main free fatty acids (stearic acid, myristate acid, and palmitic acid) and negatively correlated with the contents of free palmitic acid in the flesh of MS and MT. ACSL and FATB were positively correlated with the contents of three main free fatty acids and negatively correlated with free myristate acid. The study reveals that the expression of key enzyme genes, FabB and FabF, may improve the synthesis of free myristate in oil palm flesh, while FabF, ACSL, and FATB genes may facilitate the production of free palmitoleic acid. These genes may also promote the synthesis of free stearic acid and palmitoleic acid in oil palm flesh. However, the FabB gene may inhibit stearic acid synthesis, while ACSL and FATB genes may hinder myristate acid production. This study provides a theoretical basis for improving palm oil quality.
Bioactive Hydrogel Based on Collagen and Hyaluronic Acid Enriched with Freeze-Dried Sheep Placenta for Wound Healing Support
Authors: Sadlik Julia , Kosińska Edyta , Słota Dagmara , Niziołek Karina , Tomala Agnieszka , Włodarczyk Marcin , Piątek Paweł , Skibiński Jakub , Jampilek Josef , Sobczak-Kupiec Agnieszka
Published: January 2024

In an increasingly aging society, there is a growing demand for the development of technology related to tissue regeneration. It involves the development of the appropriate biomaterials whose properties will allow the desired biological response to be obtained. Bioactivity is strongly affected by the proper selection of active ingredients. The aim of this study was to produce bioactive hydrogel materials based on hyaluronic acid and collagen modified by the addition of placenta. These materials were intended for use as dressings, and their physicochemical properties were investigated under simulated biological environmental conditions. The materials were incubated in vitro in different fluids simulating the environment of the human body (e.g., simulated body fluid) and then stored at a temperature close to body temperature. Using an FT-IR spectrophotometer, the functional groups present in the composites were identified. The materials with the added placenta showed an increase in the swelling factor of more than 300%. The results obtained confirmed the potential of using this material as an absorbent dressing. This was indicated by pH and conductometric measurements, sorption, degradation, and surface analysis under an optical microscope. The results of the in vitro biological evaluation confirmed the cytosafety of the tested biomaterials. The tested composites activate monocytes, which may indicate their beneficial properties in the first phases of wound healing. The material proved to be nontoxic and has potential for medical use.
Wheat Transcriptional Corepressor TaTPR1 Suppresses Susceptibility Genes TaDND1/2 and Potentiates Post-Penetration Resistance against Blumeria graminis forma specialis tritici
Authors: Zhi Pengfei , Gao Rongxin , Chen Wanzhen , Chang Cheng
Published: January 2024

The obligate biotrophic fungal pathogen Blumeria graminis forma specialis tritici (B.g. tritici) is the causal agent of wheat powdery mildew disease. The TOPLESS-related 1 (TPR1) corepressor regulates plant immunity, but its role in regulating wheat resistance against powdery mildew remains to be disclosed. Herein, TaTPR1 was identified as a positive regulator of wheat post-penetration resistance against powdery mildew disease. The transient overexpression of TaTPR1.1 or TaTPR1.2 confers wheat post-penetration resistance powdery mildew, while the silencing of TaTPR1.1 and TaTPR1.2 results in an enhanced wheat susceptibility to B.g. tritici. Furthermore, Defense no Death 1 (TaDND1) and Defense no Death 2 (TaDND2) were identified as wheat susceptibility (S) genes facilitating a B.g. tritici infection. The overexpression of TaDND1 and TaDND2 leads to an enhanced wheat susceptibility to B.g. tritici, while the silencing of wheat TaDND1 and TaDND2 leads to a compromised susceptibility to powdery mildew. In addition, we demonstrated that the expression of TaDND1 and TaDND2 is negatively regulated by the wheat transcriptional corepressor TaTPR1. Collectively, these results implicate that TaTPR1 positively regulates wheat post-penetration resistance against powdery mildew probably via suppressing the S genes TaDND1 and TaDND2.
Acute-Phase Plasma Pigment Epithelium-Derived Factor Predicting Outcomes after Aneurysmal Subarachnoid Hemorrhage in the Elderly
Authors: Nampei Mai , Suzuki Yume , Nakajima Hideki , Oinaka Hiroki , Kawakita Fumihiro , Suzuki Hidenori ,   pSEED Group
Published: January 2024

Aneurysmal subarachnoid hemorrhage (SAH) has increased with the aging of the population, but the outcome for elderly SAH patients is very poor. Therefore, predicting the outcome is important for determining whether to pursue aggressive treatment. Pigment epithelium-derived factor (PEDF) is a matricellular protein that is induced in the brain, and the plasma levels could be used as a biomarker for the severity of metabolic diseases. This study investigated whether acute-phase plasma PEDF levels could predict outcomes after aneurysmal SAH in the elderly. Plasma samples and clinical variables were collected over 1–3 days, post-SAH, from 56 consecutive elderly SAH patients ≥75 years of age registered in nine regional stroke centers in Japan between September 2013 and December 2016. The samples and variables were analyzed in terms of 3-month outcomes. Acute-phase plasma PEDF levels were significantly elevated in patients with ultimately poor outcomes, and the cutoff value of 12.6 µg/mL differentiated 3-month outcomes with high sensitivity (75.6%) and specificity (80.0%). Acute-phase plasma PEDF levels of ≥12.6 µg/mL were an independent and possibly better predictor of poor outcome than previously reported clinical variables. Acute-phase plasma PEDF levels may serve as the first biomarker to predict 3-month outcomes and to select elderly SAH patients who should be actively treated.
3-(Methylthio)Propionic Acid from Bacillus thuringiensis Berliner Exhibits High Nematicidal Activity against the Root Knot Nematode Meloidogyne incognita (Kofoid and White) Chitwood
Authors: Chen Ling , Wang Yueying , Zhu Lei , Min Yong , Tian Yuxi , Gong Yan , Liu Xiaoyan
Published: January 2024

Root knot nematodes cause serious damage to global agricultural production annually. Given that traditional chemical fumigant nematicides are harmful to non-target organisms and the environment, the development of biocontrol strategies has attracted significant attention in recent years. In this study, it was found that the Bacillus thuringiensis Berliner strain NBIN-863 exhibits strong fumigant nematicidal activity and has a high attraction effect on Meloidogyne incognita (Kofoid and White) Chitwood. Four volatile organic compounds (VOCs) produced by NBIN-863 were identified using solid-phase microextraction and gas chromatography–mass spectrometry. The nematicidal activity of four VOCs, namely, N-methylformamide, propenamide, 3-(methylthio)propionic acid, and phenylmalonic acid, was detected. Among these compounds, 3-(methylthio)propionic acid exhibited the highest direct contact nematicidal activity against M. incognita, with an LC50 value of 6.27 μg/mL at 24 h. In the fumigant bioassay, the mortality rate of M. incognita treated with 1 mg/mL of 3-(methylthio)propionic acid for 24 h increased to 69.93%. Furthermore, 3-(methylthio)propionic acid also exhibited an inhibitory effect on the egg-hatching of M. incognita. Using chemotaxis assays, it was determined that 3-(methylthio)propionic acid was highly attractive to M. incognita. In pot experiments, the application of 3-(methylthio)propionic acid resulted in a reduction in gall numbers, decreasing the number of galls per gram of tomato root from 97.58 to 6.97. Additionally, the root length and plant height of the treated plants showed significant increases in comparison with the control group. The current study suggests that 3-(methylthio)propionic acid is a novel nematicidal virulence factor of B. thuringiensis. Our research provides evidence for the potential use of NBIN-863 or its VOCs in biocontrol against root knot nematodes.
An Innovative Approach to a Potential Neuroprotective Sideritis scardica-Clinoptilolite Phyto-Nanocarrier: In Vitro Investigation and Evaluation
Authors: Segneanu Adina-Elena , Vlase Gabriela , Vlase Titus , Bita Andrei , Bejenaru Cornelia , Buema Gabriela , Bejenaru Ludovic Everard , Dumitru Andrei , Boia Eugen Radu
Published: January 2024

The cutting-edge field of nanomedicine combines the power of medicinal plants with nanotechnology to create advanced scaffolds that boast improved bioavailability, biodistribution, and controlled release. In an innovative approach to performant herb nanoproducts, Sideritis scardica Griseb and clinoptilolite were used to benefit from the combined action of both components and enhance the phytochemical’s bioavailability, controlled intake, and targeted release. A range of analytical methods, such as SEM-EDX, FT-IR, DLS, and XDR, was employed to examine the morpho-structural features of the nanoproducts. Additionally, thermal stability, antioxidant screening, and in vitro release were investigated. Chemical screening of Sideritis scardica Griseb revealed that it contains a total of ninety-one phytoconstituents from ten chemical categories, including terpenoids, flavonoids, amino acids, phenylethanoid glycosides, phenolic acids, fatty acids, iridoids, sterols, nucleosides, and miscellaneous. The study findings suggest the potential applications as a promising aspirant in neurodegenerative strategy.