bluuebunny/crossref_metadata_2025 huggingface dataset:
Enhancement of Human Immunodeficiency Virus-Specific CD8+ T Cell Responses with TIGIT Blockade Involves Trogocytosis
Authors: Ghasemi Nazanin , Holder Kayla A. , Ings Danielle P. , Grant Michael D.
Published: December 2024

Natural killer (NK) and CD8+ T cell function is compromised in human immunodeficiency virus type 1 (HIV-1) infection by increased expression of inhibitory receptors such as TIGIT (T cell immunoreceptor with Ig and ITIM domains). Blocking inhibitory receptors or their ligands with monoclonal antibodies (mAb) has potential to improve antiviral immunity in general and facilitate HIV eradication strategies. We assessed the impact of TIGIT engagement and blockade on cytotoxicity, degranulation, and interferon-gamma (IFN-γ) production by CD8+ T cells from persons living with HIV (PLWH). The effect of TIGIT engagement on non-specific anti-CD3-redirected cytotoxicity was assessed in redirected cytotoxicity assays, and the effect of TIGIT blockade on HIV-specific CD8+ T cell responses was assessed by flow cytometry. In 14/19 cases where peripheral blood mononuclear cells (PBMC) mediated >10% redirected cytotoxicity, TIGIT engagement reduced the level of cytotoxicity to <90% of control values. We selected PLWH with >1000 HIV Gag or Nef-specific IFN-γ spot forming cells per million PBMC to quantify the effects of TIGIT blockade on HIV-specific CD8+ T cell responses by flow cytometry. Cell surface TIGIT expression decreased on CD8+ T cells from 23/40 PLWH following TIGIT blockade and this loss was associated with increased anti-TIGIT mAb fluorescence on monocytes. In total, 6 of these 23 PLWH had enhanced HIV-specific CD8+ T cell degranulation and IFN-γ production with TIGIT blockade, compared to 0/17 with no decrease in cell surface TIGIT expression. Reduced CD8+ T cell TIGIT expression with TIGIT blockade involved trogocytosis by circulating monocytes, suggesting that an effector monocyte population and intact fragment crystallizable (Fc) functions are required for mAb-based TIGIT blockade to effectively enhance HIV-specific CD8+ T cell responses.
Deletion of gE in Herpes Simplex Virus 1 Leads to Increased Extracellular Virus Production and Augmented Interferon Alpha Production by Peripheral Blood Mononuclear Cells
Authors: Claeys Manon , Delva Jonas , Jacqmotte Cedric , Waesberghe Cliff Van , Favoreel Herman W.
Published: December 2024

Herpes simplex virus (HSV) in humans and pseudorabies virus (PRV) in pigs are both alphaherpesviruses. Plasmacytoid dendritic cells (pDCs) make part of the peripheral blood mononuclear cells (PBMCs) and are specialized in producing large amounts of antiviral type I interferon (IFN-I). IFN-I production by PBMCs in response to both HSV-1 and PRV can be virtually exclusively attributed to pDCs. Recently, we discovered that cells infected with gEnull PRV trigger increased production of IFNalpha by porcine PBMCs/pDCs compared with cells infected with wild-type (WT) PRV. This increased IFNalpha response correlates with increased extracellular virus production triggered by gEnull PRV compared with WT PRV. The gE protein and some of its currently described functions are conserved in different alphaherpesviruses, including PRV and HSV-1. In the current study, we report that cells infected with gEnull HSV-1 trigger increased IFNalpha production by human PBMCs and increased extracellular virus production compared with WT HSV-1. Hence, these recently described functions of PRV gE are conserved in HSV-1 gE. Since the increased extracellular virus production and IFNalpha response have also been reported for successful (gEnull) PRV vaccines, the current findings may have important consequences for the rational design of HSV vaccines.
Study of the Effect of Temperature on the Production of Carrageenan-Based Buccal Films and Optimization of the Process Parameters
Authors: Kristó Katalin , Sangestani Anahita , Hassan Alharith A. A. , Rayya Hala , Pamlényi Krisztián , Kelemen András , Csóka Ildikó
Published: December 2024

Background/Objectives: Films in the mouth offer a promising alternative drug delivery system for oral administration, with several advantages over traditional oral formulations. Furthermore, their non-invasive nature and easy administration make them conducive to increasing patient compliance. The use of active agents in these films can further improve their drug delivery properties, making them an even more useful drug delivery system. Methods: In this research, carrageenan was used as a polymer, while glycerine was added as a plasticizer, furthermore, lidocaine hydrochloride and diclofenac sodium were used as the active agents. The prepared films were characterized by analytical techniques. Results: The results showed that glycerine reduced the mucoadhesivity and breaking hardness of the films and increasing the temperature made the films brittle. These results are also confirmed by the statistical analysis. Based on the FTIR results, glycerine can be used in films without structural changes. Conclusions: Based on the findings, films prepared from a solution with a concentration of 1.5% carrageenan and 1.5% glycerine at 70 °C are suitable as a drug delivery system for use on the buccal mucosa when combined with active agents. Carrageenan was successfully used as a carrier for two different types of active agents.
C118P Suppresses Gastric Cancer Growth via Promoting Autophagy–Lysosomal Degradation of RAB1A
Authors: Wei Shihui , Zhang Jing , Wu Hai , Liao Zhengguang , Liu Zhengrui , Hou Yuhang , Du Danyu , Jiang Jingwei , Sun Li , Yuan Shengtao , Yang Mei
Published: December 2024

Background/Objectives: Gastric cancer (GC) is the leading cause of cancer-related deaths worldwide. C118P, a microtubule inhibitor with anti-angiogenic and vascular-disrupting activities, was proven to be cytotoxic to various cancer cell lines. This study aimed to explore the anti-tumor effect of C118P against gastric cancer and identify its potential target. Methods: The MTT assay, colony formation assay, and EdU incorporation assay were used to evaluate the effect of C118P on GC cell proliferation. Cell cycle and cell apoptosis were measured using flow cytometry. Molecular docking, a microscale thermophoresis (MST) analysis, and the cellular thermal shift assay (CETSA) were used to investigate the binding of C118P to RAB1A. Autophagy-related effects were evaluated by using the MDC staining assay, immunofluorescence assay, and immunoblotting assay. The SGC-7901 cell line xenograft mouse model was used to confirm the anti-tumor efficacy of C118P. Results: C118P dramatically inhibited proliferation, induced G2/M cell cycle arrest, and triggered apoptosis in GC cell lines HGC-27 and SGC-7901. Mechanistically, C118P was demonstrated to bind with RAB1A and reduce the RAB1A protein level, accompanied by the inhibition of mTORC1 signaling. Moreover, C118P induced autophagosome formation and promoted RAB1A protein degradation in an autophagy–lysosomal-dependent manner. The in vivo study verified that C118P inhibits GC growth by inhibiting the RAB1A-mTOR axis. Conclusions: Our findings suggested that C118P inhibits GC growth by promoting the autophagy–lysosomal-dependent degradation of RAB1A and modulating mTOR C1 signaling. C118P shows potential as being a small molecule drug effective in the treatment of gastric cancer via targeting RAB1A.
Use of Antimicrobial Photodynamic Therapy to Inactivate Multidrug-Resistant Klebsiella pneumoniae: Scoping Review
Authors: Bravo Angélica R. , Fuentealba Felipe Alejandro , González Iván A. , Palavecino Christian Erick
Published: December 2024

Klebsiella pneumoniae is a Gram-negative bacillus responsible for a wide variety of potentially fatal infections and, in turn, constitutes a critical agent of healthcare-associated infections. Moreover, K. pneumoniae is characterized by multi-drug-resistant (MDR) bacteria, such as extended-spectrum beta-lactamases (ESBL) and carbapenemase (KPC) producer strains, representing a significant health problem. Because resistances make it difficult to eradicate using antibiotics, antimicrobial photodynamic therapy (aPDT) promises to be a favorable approach to complementing conventional therapy against MDR bacteria. This study aims to provide relevant bibliographic information on the state of the art of application of aPDT against K. pneumoniae and MDR K. pneumoniae. Our methodology follows a protocol using the PRISMA extension for scoping reviews (PRISMA-ScR) guidelines, and the search consults the PubMed (MESH), Google Scholar, and Scopus databases from January 2012 to September 2024. The eligibility criteria were (1) original articles after 2012 referring to antimicrobial photodynamic activity in K. pneumoniae in vitro and in vivo: clinical applications and synergism with antibiotics, other antimicrobial drugs, or PS coupled to other particles, (2) articles in English, and (3) articles peer-reviewed. Results. Following two independent searches in databases, 298 records were found. After applying eligibility criteria and various filters, such as removing duplicates, 25 studies were included in this review. The evidence demonstrates the effectiveness of aPDT in vitro in eradicating sensitive or MDR-K. pneumoniae strains, including strains producing biofilms, ESBL, and KPC. Finally, it is concluded that aPDT is a recommended antimicrobial therapy, but more research in vivo is needed to support studies in humans.
Molecular Docking and Antihypertensive Activity of Eupalitin 3-O-β-D-galactopyranoside Isolated from Boerhavia diffusa Linn
Authors: Uoorakkottil Ilyas , Koottangodan Rashid , Thajudheen Kamal Y. , Alsheri Saad Ali , Ahmed Mohammed Muqtader
Published: December 2024

Background: Angiotensin-converting enzyme (ACE) is a key regulator of blood pressure, and ACE inhibition is an essential part of the treatment of hypertension. We used a molecular docking approach to find the interaction of ACE with an active flavonoid isolated from Boerhavia diffusa Linn, eupalitin 3-O-β-D-galactopyranoside, which leads to potential antihypertensive effects in methyl predenisolone-induced hypertensive rats. Additionally, the pharmacokinetic parameters of this compound are assessed. Methods:eupalitin-3-O-β-D-galactopyranoside was isolated from leaves of Boerhavia diffusa by sedimentation method. The compound was characterized by UPLC-MSMS, NMR, and UV spectroscopy to confirm the identity of the compound. Hypertension was induced in rats with methyl predenisolone (5 mg/kg/day) for 14 days. Systolic and diastolic blood pressure effects of eupalitin 3-O-β-D-galactopyranoside were assessed using a tail-cuff method. The blood plasma data for oral administration were used to determine various pharmacokinetic parameters from the bioavailability and serum concentration. Results: In methyl predenisolone-induced hypertensive rats, both systolic and diastolic blood pressures were significantly lower than that of the vehicle with treatment from eupalitin 3-O-β-D-galactopyranoside (p < 0.01). Conclusions: The pharmacokinetic process showed the moderate bioavailability of the compound; eupalitin 3-O-β-D-galactopyranoside induces powerful antihypertensive activity in methyl predenisolone-induced hypertensive rats, implying potential clinical application as a new therapeutic drug for hypertension.
Vedolizumab Clearance as a Surrogate Marker for Remission in Inflammatory Bowel Disease Patients: Insights from Real-World Pharmacokinetics
Authors: Marković Srđan , Kralj Đorđe , Svorcan Petar , Knežević Ivanovski Tamara , Odanović Olga , Obradović Sanja , Homšek Ana , Jovanović Marija , Savić Rada , Vučićević Katarina M.
Published: December 2024

Background/Objectives: Vedolizumab (VDZ) is approved in the treatment of patients with moderate to severe ulcerative colitis (UC) or Crohn’s disease (CD). VDZ exhibits considerable variability in its pharmacokinetic (PK) profile, and its exposure-response relationship is not yet fully understood. The aim was to investigate the variability in VDZ trough levels and PK parameters, to assess the relationship between VDZ PK and biochemical response, as well as clinical and endoscopic outcomes. Methods: We included 61 UC and 45 CD patients. Patients’ data and trough VDZ concentrations were retrospectively obtained. Population PK analysis was performed using non-linear mixed-effects modelling with NONMEM (version 7.5). Graphs and statistical analyses were performed using R (version 4.1.3). Results: In total, 116 trough VDZ concentrations from 106 patients were described by a two-compartment model. For a typical patient, clearance (CL) was estimated at 0.159 L/day, while in patients previously treated with anti-TNFα agents, VDZ CL increased by 26.4% on average. In univariate binary logistic regression, VDZ trough concentration was not statistically significant predictor of remission, whereas CL was. Moreover, combined CL and faecal calprotectin (FCP) were a statistically significant predictors of remission. The hazard ratio (HR) for CL above 0.1886 L/day was 0.35 (p = 0.05) and for FCP below 250 µg/g was 2.66 (p = 0.02) in a time-to-event analysis. Conclusions: Our population PK model incorporates the effect of prior anti-TNFα agents on CL, suggesting its association with more severe forms of IBD. VDZ CL emerged as a more robust and clinically relevant predictor of remission in IBD patients than trough concentration.
Virus-like Particles Produced in Plants: A Promising Platform for Recombinant Vaccine Development
Authors: Mardanova Eugenia S. , Vasyagin Egor A. , Ravin Nikolai V.
Published: December 2024

The capsid proteins of many viruses are capable of spontaneous self-assembly into virus-like particles (VLPs), which do not contain the viral genome and are therefore not infectious. VLPs are structurally similar to their parent viruses and are therefore effectively recognized by the immune system and can induce strong humoral and cellular immune responses. The structural features of VLPs make them an attractive platform for the development of potential vaccines and diagnostic tools. Chimeric VLPs can be obtained by attaching foreign peptides to capsid proteins. Chimeric VLPs present multiple copies of the antigen on their surface, thereby increasing the effectiveness of the immune response. Recombinant VLPs can be produced in different expression systems. Plants are promising biofactories for the production of recombinant proteins, including VLPs. The main advantages of plant expression systems are the overall low cost and safety of plant-produced products due to the absence of pathogens common to plants and animals. This review provides an overview of the VLP platform as an approach to developing plant-produced vaccines, focusing on the use of transient expression systems.
Climate and Bedrock Collectively Influence the Diversity Pattern of Plant Communities in Qiniangshan Mountain
Authors: Li Xujie , Zhao Wanyi , Sun Xianling , Zhang Xuejiao , Liao Wenbo , Fan Qiang
Published: December 2024

Climate and geological diversity have been proven to make an important contribution to biodiversity. Volcanic ecosystems often have a long geological history and diverse bedrock, thus shaping a variety of habitats. Understanding the relative importance and role of the contemporary climate and geological bedrock environment in volcanic biodiversity still needs further exploration. To address this knowledge gap, we investigated the patterns of plant diversity and phylogenetic structure at the community level in Qiniangshan Mountain, while also exploring the relationship between biodiversity and regional environmental factors (e.g., climate and bedrock types). In the Qiniangshan Mountain plant communities, species richness is higher at mid-to-high elevations. Montane communities exhibit higher species richness compared to coastal communities. There are significant differences in species richness among plant communities on different bedrock, with the highest species richness found on pyroclastic lava. Bedrock, along with climate factors related to energy and precipitation, collectively influence the patterns of species richness in plant communities. The Net Relatedness Index (NRI) of plant communities is influenced by climate factors and aspects, while the Nearest Taxon Index (NTI) is affected by both bedrock and climate factors. The Phylogenetic Diversity Index (PDI) is primarily related to climate factors. Climate and bedrock collectively influence the patterns of species richness and phylogenetic structure within Qiniangshan Mountain’s plant communities. These findings highlight the profound impact of both climate and bedrock on montane vegetation and community biodiversity.
Genetic Transformation of Torenia fournieri L. with the Bacillus thuringiensis Cry1Ab Gene Confers Resistance to Mythimna separata (Walker)
Authors: Chen Lin , Wang Pei , Tan Lixia , Li Houhua , Wang Dun
Published: December 2024

Torenia fournieri L. is a popular ornamental plant in the genus Torenia, widely used in commercial landscaping, especially during the summer. Additionally, Torenia has served as a model ornamental plant in many studies exploring ornamental characteristics and pest control through genetic engineering. To date, no research has been reported on developing insect-resistant Torenia expressing genes from Bacillus thuringiensis (Bt). In this study, a recombinant vector carrying the Cry1Ab gene from Bt, pBI121-Cry1Ab, was constructed and transferred into T. fournieri via Agrobacterium tumefaciens-mediated transformation. A total of 13 shoots survived on the kanamycin selection medium, among which four putative transgenic lines, designated L1, L2, L7, and L11, were molecularly confirmed by PCR and Southern blot analysis, indicating successful integration of the Cry1Ab gene into the genomes of these lines. Quantitative real-time PCR and ELISA results further verified the successful expression of the Cry1Ab gene in the leaves of all four transgenic lines. Insect bioassay results demonstrated that all four transgenic lines showed strong resistance to the insect pest, Mythimna separata, with mortality rates ranging from 59.9% to 100.0%, in contrast to a larval mortality rate of 16.2% in the wild-type Torenia. Additionally, these transgenic lines significantly decreased in larval survival rates compared to those fed on wild-type plants. Furthermore, these transgenic lines activated superoxide dismutase (SOD) activity at 12 and 24 h, and catalase (CAT) activity at 72 h, while suppressing SOD activity at 72 h, and peroxidase (POD) activity over time. Our findings indicate that these transgenic lines exhibit high resistance to the insect pest and provide new insights into controlling insect pests in ornamental plants through genetic approaches.
Expression and Characterization of Alkaline Phosphatase from Cobetia amphilecti KMM 296 in Transiently Transformed Tobacco Leaves and Transgenic Calli
Authors: Adedibu Peter Adeolu , Noskova Yulia Aleksandrovna , Yugay Yulia Anatolievna , Ovsiannikova Daria Mikhailovna , Vasyutkina Elena Anatolievna , Kudinova Olesya Dmitrievna , Grigorchuk Valeria Petrovna , Shkryl Yury Nikolaevich , Tekutyeva Liudmila Aleksandrovna , Balabanova Larissa Anatolievna
Published: December 2024

Alkaline phosphatase (ALP) of the PhoA family is an important enzyme in mammals, microalgae, and certain marine bacteria. It plays a crucial role in the dephosphorylation of lipopolysaccharides (LPS) and nucleotides, which overstimulate cell signaling pathways and cause tissue inflammation in animals and humans. Insufficient ALP activity and expression levels have been linked to various disorders. This study aims to produce recombinant ALP from the marine bacterium Cobetia amphilecti KMM 296 (CmAP) in transformed leaves and calli of Nicotiana tabacum and to elucidate the influence of the plant host on its physical and chemical properties. N. tabacum has proven to be versatile and is extensively used as a heterologous host in molecular farming. The alp gene encoding for CmAP was cloned into the binary vectors pEff and pHREAC and transformed into N. tabacum leaves through agroinfiltration and the leaf disc method for callus induction using Agrobacterium tumefaciens strain EHA105. Transformed plants were screened for recombinant CmAP (rCmAP) production by its enzymatic activity and protein electrophoresis, corresponding to 55 kDa of mature CmAP. A higher rCmAP activity (14.6 U/mg) was detected in a homogenate of leaves bearing the pEFF-CmAP construct, which was further purified 150-fold using metal affinity, followed by anion exchange chromatography. Enzymatic activity and stability were assessed at different temperatures (15–75 °C) and exposure times (≤1 h), with different buffers, pHs, divalent metal ions, and salt concentrations. The results show that rCmAP is relatively thermostable, retaining its activity at 15–45 °C for up to 1 h. Its activity is highest in Tris HCl (pH 9.0–11.0) at 35 °C for 40 min. rCmAP shows higher salt-tolerance and divalent metal-dependence than obtained in Escherichia coli. This can be further explored for cost-effective and massively scalable production of LPS-free CmAP for possible biomedical and agricultural applications.
Identification and Functional Analysis of the Ph-2 Gene Conferring Resistance to Late Blight (Phytophthora infestans) in Tomato
Authors: Pan Chunyang , Li Xin , Lu Xiaoxiao , Hu Junling , Zhang Chen , Shi Lianfeng , Zhu Can , Guo Yanmei , Wang Xiaoxuan , Huang Zejun , Du Yongchen , Liu Lei , Li Junming
Published: December 2024

Late blight is a destructive disease affecting tomato production. The identification and characterization of resistance (R) genes are critical for the breeding of late blight-resistant cultivars. The incompletely dominant gene Ph-2 confers resistance against the race T1 of Phytophthora infestans in tomatoes. Herein, we identified Solyc10g085460 (RGA1) as a candidate gene for Ph-2 through the analysis of sequences and post-inoculation expression levels of genes located within the fine mapping interval. The RGA1 was subsequently validated to be a Ph-2 gene through targeted knockout and complementation analyses. It encodes a CC-NBS-LRR disease resistance protein, and transient expression assays conducted in the leaves of Nicotiana benthamiana indicate that Ph-2 is predominantly localized within the nucleus. In comparison to its susceptible allele (ph-2), the transient expression of Ph-2 can elicit hypersensitive responses (HR) in N. benthamiana, and subsequent investigations indicate that the structural integrity of the Ph-2 protein is likely a requirement for inducing HR in this species. Furthermore, ethylene and salicylic acid hormonal signaling pathways may mediate the transmission of the Ph-2 resistance signal, with PR1- and HR-related genes potentially involved in the Ph-2-mediated resistance. Our results could provide a theoretical foundation for the molecular breeding of tomato varieties resistant to late blight and offer valuable insights into elucidating the interaction mechanism between tomatoes and P. infestans.
Xylem Hydraulics of Two Temperate Tree Species with Contrasting Growth Rates
Authors: Wang Ai-Ying , Lu Yi-Jun , Cui Han-Xiao , Liu Shen-Si , Li Si-Qi , Hao Guang-You
Published: December 2024

Hydraulic functionality is crucial for tree productivity and stress tolerance. According to the theory of the fast–slow economics spectrum, the adaptive strategies of different tree species diverge along a spectrum defined by coordination and trade-offs of a suite of functional traits. The fast- and slow-growing species are expected to differ in hydraulic efficiency and safety; however, there is still a lack of investigation on the mechanistic association between tree growth rate and tree hydraulic functionality. Here, in a common garden condition, we measured radial growth rate and hydraulic traits in a fast-growing (Populus alba L. × P. berolinensis Dippel) and a slow-growing tree species (Acer truncatum Bunge), which are both important tree species for afforestation in northern China. In line with the contrasts in radial growth rate and wood anatomical traits at both the tissue and pit levels between the two species, stem hydraulic conductivity of the Populus species was significantly higher than that of the Acer species, but the resistance to drought-induced xylem cavitation was the opposite. A trade-off between hydraulic efficiency and safety was observed across the sampled trees of the two species. Higher water-transport efficiency supports the greater leaf net photosynthetic carbon assimilation capacity of the Populus species and hence facilitates fast growth, while the conservative hydraulic traits of the Acer species result in a slower growth rate but enhanced drought tolerance.
Phytochemical and Cytotoxic Aspects of Amaryllidaceae Alkaloids in Galanthus Species: A Review
Authors: Georgiev Borislav , Sidjimova Boriana , Berkov Strahil
Published: December 2024

The genus Galanthus (Amaryllidaceae) currently contains 25 plant species naturally occurring in Europe and the Middle East region. These perennial bulbous plants possess well-known medicinal and ornamental qualities. Alkaloid diversity is their most distinctive phytochemical feature. A total of 127 compounds (≈20% of all known Amaryllidaceae alkaloids) grouped in 16 structural types have been previously found in Galanthus extracts. Some structural types like galanthindole, graciline and plicamine were first discovered in Galanthus plants. Nine Galanthus species, however, remain unstudied regarding their alkaloid patterns. Intraspecific variability has only been studied in G. nivalis and G. elwesii. Amaryllidaceae alkaloids are molecules with anticholinesterase, antibacterial, antifungal, antiviral and anticancer properties. Galanthamine, isolated for the first time from Galanthus woronowii Losinsk., stands out as an acetylcholinesterase inhibitor approved for medical use by the FDA for the treatment of symptoms of Alzheimer’s disease. Lycorine, narciclasine and pancratistatin are noteworthy cytotoxic and antitumor alkaloids. Structural types like galanthamine, homolycorine and haemanthamine are fairly well studied in anticancer research, but little to no information is available on galanthindole, graciline and other types. This review aims to present an update on the alkaloid diversity of Galanthus spp. and highlight the need for further research on the antitumor potential of these molecules.
Effects of Seed Colour and Regulated Temperature on the Germination of Boswellia pirottae Chiov.: An Endemic Gum- and Resin-Bearing Species
Authors: Alem Shiferaw , Karas Lukáš , Habrová Hana
Published: December 2024

(1) Background: According to the IUCN, Boswellia pirottae is classified as a vulnerable species. However, knowledge of its seed characteristics and germination behaviour is lacking. (2) Methods: The aim of this research was to characterise the seeds and evaluate the effects of seed colour and controlled temperatures on seed germination. The seeds were segregated into the following colour categories: light brown (LB), brown (B), and dark brown (DB). The seeds were evaluated under controlled constant temperatures (23 °C) and at room (fluctuating) temperature independently. One-way ANOVA, t-test, and germination indexes were used for analyses. (3) Results: The results showed significant differences in the mean seed masses of LB, B, and DB seeds. Similarly, the differently coloured seeds varied in their water imbibition rates. The result showed significant differences in the mean germination of the seeds in both the controlled temperature (23 °C) and room-temperature chambers among the LB, B, and DB seeds. However, the t-test revealed no significant differences in the mean germination of the seeds of similar colours between controlled temperature and room temperature conditions. (4) Conclusions: The seed’s colour significantly influenced the seed mass, water imbibition capacity, and germination rate relative to the temperature treatment. Dark brown seeds are recommended for seed collection aimed at seedling propagation.
Endemic Yucatan Peninsula Plants with Pesticidal Potential: Herbarium-Based Literature Review
Authors: Alonso-Hernández Nancy , Granados-Echegoyen Carlos , Zárate-Nicolás Baldomero H. , Hinojosa-Garro Demian , Loera-Alvarado Esperanza , Landero-Valenzuela Nadia , Quiroz-González Beatriz , Diego-Nava Fidel , Ordaz-Silva Salvador , López-Sánchez Imelda Virginia , Carrazco-Peña Laura Dennisse
Published: December 2024

Agricultural pests present a significant challenge to humanity, often managed through synthetic chemicals that, when misused, can cause irreversible harm to both the environment and human health. This study focuses on endemic plants from the Yucatán Peninsula in Mexico, particularly from the state of Campeche, to identify their historical uses and propose an updated list of species with pesticide potential in the region. We systematically reviewed specimens from the Center for Sustainable Development and Wildlife Management (CEDESU) herbarium and local databases. Of the 3084 specimens collected, 2524 (81.84%) were from Campeche. The collection encompasses 106 botanical families, 459 genera, and 747 species. The study identified 201 plant species from 48 taxonomic families that are endemic to the Yucatán Peninsula Biotic Province (YPBP), of which 123 species are exclusive to the Mexican Yucatán Peninsula (MYP), representing 61.19% of the endemic species. Campeche contains 134 species (66.66%), distributed across 96 genera and 43 families. Notably, 46.26% of the species (62 species) belong to the Mexican region, with 8 species (12.90%) exclusive to Campeche. The research revealed that 27.90% of the families and 19.79% of the genera present in the state have been the subject of previous scientific studies regarding their use as pesticides. The most extensively studied families were Euphorbiaceae and Fabaceae. However, there is a notable lack of research on endemic plants from the Yucatán Peninsula, underscoring the need for increased attention to these species. The identified genera and families contain chemical compounds with activity against significant pests, demonstrating substantial potential for the development of natural pesticides.
The Ameliorative Effect of Coumarin on Copper Toxicity in Citrus sinensis: Insights from Growth, Nutrient Uptake, Oxidative Damage, and Photosynthetic Performance
Authors: Huang Wei-Lin , Yang Hui , Chen Xu-Feng , Lu Fei , Xie Rong-Rong , Yang Lin-Tong , Ye Xin , Huang Zeng-Rong , Chen Li-Song
Published: December 2024

Excessive copper (Cu) has become a common physiological disorder restricting the sustainable production of citrus. Coumarin (COU) is a hydroxycinnamic acid that can protect plants from heavy metal toxicity. No data to date are available on the ameliorative effect of COU on plant Cu toxicity. ‘Xuegan’ (Citrus sinensis (L.) Osbeck) seedlings were treated for 24 weeks with nutrient solution containing two Cu levels (0.5 (Cu0.5) and 400 (Cu400) μM CuCl2) × four COU levels (0 (COU0), 10 (COU10), 50 (COU50), and 100 (COU100) μM COU). There were eight treatments in total. COU supply alleviated Cu400-induced increase in Cu absorption and oxidative injury in roots and leaves, decrease in growth, nutrient uptake, and leaf pigment concentrations and CO2 assimilation (ACO2), and photo-inhibitory impairment to the whole photosynthetic electron transport chain (PETC) in leaves, as revealed by chlorophyll a fluorescence (OJIP) transient. Further analysis suggested that the COU-mediated improvement of nutrient status (decreased competition of Cu2+ with Mg2+ and Fe2+, increased uptake of nutrients, and elevated ability to maintain nutrient balance) and mitigation of oxidative damage (decreased formation of reactive oxygen species and efficient detoxification system in leaves and roots) might lower the damage of Cu400 to roots and leaves (chloroplast ultrastructure and PETC), thereby improving the leaf pigment levels, ACO2, and growth of Cu400-treated seedlings.
Strawberry Plant as a Biomonitor of Trace Metal Air Pollution—A Citizen Science Approach in an Urban-Industrial Area near Lisbon, Portugal
Authors: Gamelas Carla A. , Canha Nuno , Justino Ana R. , Nunes Alexandra , Nunes Sandra , Dionísio Isabel , Kertesz Zsofia , Almeida Susana Marta
Published: December 2024

A biomonitoring study of air pollution was developed in an urban-industrial area (Seixal, Portugal) using leaves of strawberry plants (Fragaria × ananassa Duchesne ex Rozier) as biomonitors to identify the main sources and hotspots of air pollution in the study area. The distribution of exposed strawberry plants in the area was based on a citizen science approach, where residents were invited to have the plants exposed outside their homes. Samples were collected from a total of 49 different locations, and their chemical composition was analyzed for 22 chemical elements using X-ray Fluorescence spectrometry. Source apportionment tools, such as enrichment factors and principal component analysis (PCA), were used to identify three different sources, one geogenic and two anthropogenic (steel industry and traffic), besides plant major nutrients. The spatial distribution of elemental concentrations allowed the identification of the main pollution hotspots in the study area. The reliability of using strawberry leaves as biomonitors of air pollution was evaluated by comparing them with the performance of transplanted lichens by regression analysis, and a significant relation was found for Fe, Pb, Ti, and Zn, although with a different accumulation degree for the two biomonitors. Furthermore, by applying PCA to the lichen results, the same pollution sources were identified.
Genome-Wide Identification and Expression Analysis of Members in the YT521-B Homology Domain-Containing RNA Binding Protein Family in Ginkgo biloba
Authors: Wang Han , Zhang Jingjing , Yao Sheng , Cheng Xiang , Ji Kongshu , Yu Qiong
Published: December 2024

N6-methyladenosine (m6A) is a widespread post-transcriptional modification of RNA in eukaryotes. The conserved YTH-domain-containing RNA binding protein has been widely reported to serve as a typical m6A reader in various species. However, no studies have reported the m6A readers in Ginkgo biloba (G. biloba). In this study, a systematic analysis of the m6A reader (YTH) gene family was performed on G. biloba, identifying 10 YTH genes in its genome. Phylogenetic analysis of protein-coding sequences revealed that YTH genes from G. biloba could be classified into two subgroups: GbDC1 and GbDC2 in GbDC and GbDF1-8 in GbDF, each with similar motifs and gene structures. In G. biloba, the predicated aromatic cage pocket of the YTH domains in the YTH gene family is uniformly composed of tryptophan residues (WWW). Subcellular localization experiments verified that GbDC1 is indeed localized in the nucleus, while GbDF1 is localized in both the nucleus and the cytoplasm. The expression patterns of the identified m6A reader genes showed a wide distribution but were tissue-specific. Most genes were highly expressed in leaves, followed by the stem, while the lowest expression tendency was found in the roots. Cis-regulatory element analysis predicted the possible functions of YTH genes in G. biloba, which were mainly responsive to plant hormones such as ABA and MeJA, as well as stress responses. Furthermore, the expression levels of YTH genes indeed changed significantly after ABA, MeJA, and NaCl treatments, suggesting that they can be affected by these abiotic factors. In addition, the PLAAC prediction results indicate that prion domains exist in GbDF1, GbDF2, GbDF3, GbDF4, GbDF6, GbDF7, GbDF8, and GbDC1, and phase separation is possible. This study provides a foundation for further investigation of the effects of m6A methylation on gene expression regulation in G. biloba and other forest trees.
Optimization of γ-Aminobutyric Acid Production in Brown Rice via Prolonged Seed Priming
Authors: Xu Lingxiang , Wang Xiaoan , Li Qixiang , Niu Yuqing , Ding Guohui , He Jiawei , Chen Weiping , Tian Dagang
Published: December 2024

Germinated whole seeds possess elevated levels of bioactive nutrients; however, their application is hindered by several constraints. The germination process is typically time-consuming, and germinated seeds present challenges in terms of storage and transportation compared to dry seeds. This study introduces a novel processing method for rice, termed prolonged priming (PLP), aiming to combine the benefits of germinated and dry seeds. PLP involves soaking the seeds until the embryo exposure stage, followed by redrying. At 10 h (hour) germination post PLP, the γ-aminobutyric acid (GABA) levels in Hanyou73 (HY73) and IRAT exceeded 20 mg/100 g. Additionally, there was an induction of various nutrient components, including an increase in protein content, a reduction in amylose levels, and an elevation in fatty acid content, among others. Malondialdehyde levels, indicating oxidative damage, remained stable, and PLP preserved better seed integrity compared to routine priming in the desiccation-tolerant HY73. Collectively, the PLP treatment demonstrates an optimization of the nutritional value and storage in germinated brown rice (GBR). This novel process holds potential for enhancing the nutritional profile of GBR and may be applicable to other crop species.
Genome-Wide Identification and Expression Analysis of NAC Gene Family Members in Seashore Paspalum Under Salt Stress
Authors: Wu Xuanyang , Hu Xiaochen , Bao Qinyan , Sun Qi , Yu Pan , Qi Junxiang , Zhang Zixuan , Luo Chunrong , Wang Yuzhu , Lu Wenjie , Wu Xueli
Published: December 2024

The NAC gene family plays a crucial role in plant growth, development, and responses to biotic and abiotic stresses. Paspalum Vaginatum, a warm-season turfgrass with exceptional salt tolerance, can be irrigated with seawater. However, the NAC gene family in seashore paspalum remains poorly understood. In this study, genome-wide screening and identification were conducted based on the NAC (NAM) domain hidden Markov model in seashore paspalum, resulting in the identification of 168 PvNAC genes. A phylogenetic tree was constructed, and the genes were classified into 18 groups according to their topological structure. The physicochemical properties of the PvNAC gene family proteins, their conserved motifs and structural domains, cis-acting elements, intraspecific collinearity analysis, GO annotation analysis, and protein–protein interaction networks were analyzed. The results indicated that the majority of PvNAC proteins are hydrophilic and predominantly localized in the nucleus. The promoter regions of PvNACs are primarily enriched with light-responsive elements, ABRE motifs, MYB motifs, and others. Intraspecific collinearity analysis suggests that PvNACs may have experienced a large-scale gene duplication event. GO annotation indicated that PvNAC genes were essential for transcriptional regulation, organ development, and responses to environmental stimuli. Furthermore, the protein interaction network predicted that PvNAC73 interacts with proteins such as BZIP8 and DREB2A to form a major regulatory hub. The transcriptomic analysis investigates the expression patterns of NAC genes in both leaves and roots under varying durations of salt stress. The expression levels of 8 PvNACs in roots and leaves under salt stress were examined and increased to varying degrees under salt stress. The qRT-PCR results demonstrated that the expression levels of the selected genes were consistent with the FPKM value trends observed in the RNA-seq data. This study established a theoretical basis for understanding the molecular functions and regulatory mechanisms of the NAC gene family in seashore paspalum under salt stress.
Physiological Responses of Populus cathayana and Salix babylonica to Combined Stress of Diesel Fuel and Sr2+ Stress in Soil
Authors: Luo Chunyan , Jiang Tingting , Ren Peng , Suo Zhirong , Chen Ke
Published: December 2024

Diesel spills and nuclides pollution cause global ecosystem and human health problems. The remediation of contaminated soil using woody plants has received considerable attention. Differences in plant species and sex can lead to differences in tolerance to various stressors. We aimed to investigate the response of male and female seedlings of Populus cathayana and Salix babylonica to diesel and Sr2+ stress and to compare the enrichment characteristics of Sr2+ in trees. Male and female seedlings of P. cathayana and S. babylonica were treated with diesel fuel and 0, 10 (low), and 100 (high) mg Kg−1 of Sr2+. Results showed that P. cathayana and S. babylonica had good enrichment characteristics and tolerance. S. babylonica had a more robust tolerance and ability to remediate contaminated soil than P. cathayana. The defense mechanisms of both female seedlings in response to stress were similar, while males showed different defense strategies. Male trees had higher Sr2+ enrichment capacity, antioxidant enzymes, soil enzyme activity, and soluble matter content, indicating that males had higher tolerance capacity than females. Under diesel stress alone, the reduced photosynthetic rate of male seedlings of P. cathayana was mainly limited by stomatal factors, and their photosynthetic system was more tolerant to diesel. POD and APX activities, as well as alkaline phosphatase and urease activities in the soil, were significantly higher in S. babylonica seedlings than in P. cathayana, indicating that S. babylonica seedlings were more resistant to diesel pollution. At low concentrations of the Sr2+ complex, diesel and Sr2+ showed antagonistic effects in reducing the damage caused by stress. As the Sr2+ concentration increased, damage to the plants manifested primarily through synergistic enhancement. The results of this study provide a scientific basis for the remediation of diesel fuel and nuclides contaminated soils using woody plants.
Optimizing Visualization of Pollen Tubes in Wheat Pistils
Authors: Mishina Kohei , Morita Minami , Matsumoto Sora , Sakuma Shun
Published: December 2024

Successful pollination and fertilization are crucial for grain setting in cereals. Wheat is an allohexaploid autogamous species. Due to its evolutionary history, the genetic diversity of current bread wheat (Triticum aestivum) cultivars is limited. Introducing favorable alleles from related wild and cultivated wheat species is a promising breeding strategy for resolving this issue. However, wide hybridization between bread wheat and its relatives is hampered by the presence of suppressor genes and difficulties in crossing. Optimized methods for observing pollen tubes are essential for understanding the mechanism of crossability between wheat and its relatives. Here, we improved the crossing procedure between bread wheat and rye (Secale cereale) and established an optimized protocol for visualizing pollen tube behavior. Crossing via detached spike culture significantly enhanced crossing efficiency and phenotypic stability. A combination of canonical aniline blue staining and optimized clearing and sectioning allowed us to visualize pollen tube behavior. The proportion of rye pollen tubes reaching the micropyle was lower than that for pollen tubes germinated on the stigmatic hair, explaining why the hybrid seed-setting rate was approximately 75% instead of 100%. This method sheds light on wide hybridization through deeper visualization of the insides of pistils.
Stretchable Thermochromic Fluorescent Fibers Based on Self-Crystallinity Phase Change for Smart Wearable Displays
Authors: Guo Yongmei , Hu Zixi , Zhan Luyao , Liu Yongkun , Sun Luping , Ma Ying
Published: December 2024

Smart fibers with tunable luminescence properties, as a new form of visual output, present the potential to revolutionize personal living habits in the future and are receiving more and more attention. However, a huge challenge of smart fibers as wearable materials is their stretching capability for seamless integration with the human body. Herein, stretchable thermochromic fluorescent fibers are prepared based on self-crystallinity phase change, using elastic polyurethane (PU) as the fiber matrix, to meet the dynamic requirements of the human body. The switching fluorescence-emitting characteristic of the fibers is derived from the reversible conversion of the dispersion/aggregation state of the fluorophore coumarin 6 (C6) and the quencher methylene blue (MB) in the phase-change material hexadecanoic acid (HcA) during heating/cooling processes. Considering the important role of phase-change materials, thermochromic fluorescent dye is encapsuled in the solid state via the piercing–solidifying method to avoid the dissolution of HcA by the organic solvent of the PU spinning solution and maintain excellent thermochromic behavior in the fibers. The fibers obtained by wet spinning exhibit good fluorescent emission contrast and reversibility, as well as high elasticity of 800% elongation. This work presents a strategy for constructing stretchable smart luminescence fibers for human–machine interaction and communications.
Temperature Areas of Local Inelasticity in Polyoxymethylene
Authors: Lomovskoy Viktor A. , Shatokhina Svetlana A. , Alekhina Raisa A. , Lomovskaya Nadezhda Yu.
Published: December 2024

The spectra of internal friction and temperature dependencies of the frequency of a free-damped oscillation process excited in the specimens of an amorphous–crystalline copolymer of polyoxymethylene with the co-monomer trioxane (POM-C) with a degree of crystallinity ~60% in the temperature range from −150 °C to +170 °C has been studied. It has been established that the spectra of internal friction show five local dissipative processes of varying intensity, manifested in different temperature ranges of the spectrum. An anomalous decrease in the frequency of the oscillatory process was detected in the temperature ranges where the most intense dissipative losses appear on the spectrum of internal friction. Based on phenomenological model representations of a standard linear solid, the physical–mechanical (shear modulus defect, temperature position of local regions of inelasticity) and physical–chemical (activation energy, discrete relaxation time, intensities of detected dissipative processes) characteristics of each local dissipative process were calculated. It was found that the intensities of dissipative processes remain virtually unchanged for both annealed and non-annealed samples. The maximum variation in the shear modulus defect is 0.06%. Additionally, according to computational data, small changes are also characteristic of the following parameters: the activation energy varies from 0.5 to 1.4 kJ/mol and the relaxation time changes from 0.002 to 0.007 s, depending on the presence or absence of annealing. As a result of annealing, there is a significant increase in the relaxation microinheterogenity of the polymer system across the entire temperature range (250% for the low-temperature region and 115% for the high-temperature region).
Layered Composites for High Tan Delta Plateau over Wide Temperature Range
Authors: Wang Taoxi , Chen Hongmei , Liang Wei Jun , Ng Boon Siang Lucas , Lu Runzhi , Qi Ji , Wang Huaquan , Zhang Junhua , Xie Hui , Xiao Rui , Huang Wei Min
Published: December 2024

Tan Delta reflects the viscoelastic behavior of materials, particularly polymers. In most cases, a high Tan Delta value is associated with transitions (such as glass transition or melting), enabling effective damping properties near these temperature ranges. However, achieving a high Tan Delta over a broad temperature range is challenging, particularly for engineering applications that involve significant temperature fluctuations. This paper presents a straightforward method using layered composites, where a polymer layer is sandwiched between two highly stretchable elastic fabrics, to achieve a wide Tan Delta plateau (TDP) across a broad temperature range. The three-layer configuration consists of a polymer core embedded between two elastic layers. All samples prepared with this architecture consistently exhibit the TDP. Further investigations examine the influence of factors such as the number of layers and the stretchability of the elastic fabrics. The results demonstrate that the TDP can be effectively tailored for engineering applications using this layered design.