bluuebunny/crossref_metadata_2025 huggingface dataset:
The First 100 Days: Establishment and Effectiveness of Campus Protection Measures at a College during the COVID-19 Pandemic
Authors: Chang Tsan-Chang , Lin Mei-Ying , Huang Jui-Chi , Yen Cheng-Tung , Li Ching-Hui , Jan Woan-Ching , Huang Huei-Ying , Liu Chien-Liang , Chen Yu-Jen
Published: August 2020

To prevent transmission of the coronavirus, we established the campus protection measures for coronavirus disease 2019 (COVID-19) (CPMCV-19) and analyzed the effectiveness and cost in practice. This project was set in Taiwan. We organized an anti-epidemic task force team from multidisciplinary co-workers to establish the CPMCV-19. The essential components were as follows: no close contact communication, sterilization, temperature control, social distancing, activity restrictions, personal hygiene control, and situational awareness. During 100 days of operation, the mean time spent for frontal temperature measuring was 2.7 ± 0.3 s per person. The mean on-duty time for individual personnel to control the gate and measure temperature was 3.5 h per day. In total, 31 persons with loss of taste/smell or fever were detected on campus and sent to hospital for screening within 1 h. A total of 6 persons were instructed to observe self-health management due to possible contact or travel history, and none were diagnosed with COVID-19 infection. A total budget of USD 27,100 was used for CMPCV-19 in this period. The established campus protection measures for COVID-19 were practical and might be effective. They can be used as reference for schools in a pandemic, such as COVID-19.
iPSC-Derived Liver Organoids: A Journey from Drug Screening, to Disease Modeling, Arriving to Regenerative Medicine
Authors: Olgasi Cristina , Cucci Alessia , Follenzi Antonia
Published: August 2020

Liver transplantation is the most common treatment for patients suffering from liver failure that is caused by congenital diseases, infectious agents, and environmental factors. Despite a high rate of patient survival following transplantation, organ availability remains the key limiting factor. As such, research has focused on the transplantation of different cell types that are capable of repopulating and restoring liver function. The best cellular mix capable of engrafting and proliferating over the long-term, as well as the optimal immunosuppression regimens, remain to be clearly well-defined. Hence, alternative strategies in the field of regenerative medicine have been explored. Since the discovery of induced pluripotent stem cells (iPSC) that have the potential of differentiating into a broad spectrum of cell types, many studies have reported the achievement of iPSCs differentiation into liver cells, such as hepatocytes, cholangiocytes, endothelial cells, and Kupffer cells. In parallel, an increasing interest in the study of self-assemble or matrix-guided three-dimensional (3D) organoids have paved the way for functional bioartificial livers. In this review, we will focus on the recent breakthroughs in the development of iPSCs-based liver organoids and the major drawbacks and challenges that need to be overcome for the development of future applications.
A Novel Peptide Antibiotic, Pro10-1D, Designed from Insect Defensin Shows Antibacterial and Anti-Inflammatory Activities in Sepsis Models
Authors: Krishnan Manigandan , Choi Joonhyeok , Jang Ahjin , Kim Yangmee
Published: August 2020

Owing to the challenges faced by conventional therapeutics, novel peptide antibiotics against multidrug-resistant (MDR) gram-negative bacteria need to be urgently developed. We had previously designed Pro9-3 and Pro9-3D from the defensin of beetle Protaetia brevitarsis; they showed high antimicrobial activity with cytotoxicity. Here, we aimed to develop peptide antibiotics with bacterial cell selectivity and potent antibacterial activity against gram-negative bacteria. We designed 10-meric peptides with increased cationicity by adding Arg to the N-terminus of Pro9-3 (Pro10-1) and its D-enantiomeric alteration (Pro10-1D). Among all tested peptides, the newly designed Pro10-1D showed the strongest antibacterial activity against Escherichia coli, Acinetobacter baumannii, and MDR strains with resistance against protease digestion. Pro10-1D can act as a novel potent peptide antibiotic owing to its outstanding inhibitory activities against bacterial film formation with high bacterial cell selectivity. Dye leakage and scanning electron microscopy revealed that Pro10-1D targets the bacterial membrane. Pro10-1D inhibited inflammation via Toll Like Receptor 4 (TLR4)/Nuclear factor-κB (NF-κB) signaling pathways in lipopolysaccharide (LPS)-stimulated RAW264.7 cells. Furthermore, Pro10-1D ameliorated multiple-organ damage and attenuated systemic infection-associated inflammation in an E. coli K1-induced sepsis mouse model. Overall, our results suggest that Pro10-1D can potentially serve as a novel peptide antibiotic for the treatment of gram-negative sepsis.
Downregulation of TAP1 in Tumor-Free Tongue Contralateral to Squamous Cell Carcinoma of the Oral Tongue, an Indicator of Better Survival
Authors: Attaran Nima , Gu Xiaolian , Coates Philip J. , Fåhraeus Robin , Boldrup Linda , Wilms Torben , Wang Lixiao , Sgaramella Nicola , Zborayova Katarina , Nylander Karin
Published: August 2020

Oral cancers are surrounded by epithelium that histologically might seem normal, but genetically has aberrations. In patients with squamous cell carcinoma of the oral tongue (SCCOT), it is therefore important to study not only the tumor but also the clinically tumor-free contralateral tongue tissue that remains in the patient after treatment to map changes of prognostic and/or diagnostic value. The transporter associated with antigen processing (TAP) dimer is a key factor in the process of activating cytotoxic T cells. By downregulating the expression of TAP, tumor cells can escape cytotoxic T cell recognition. Biopsies from tumor and clinically tumor-free contralateral tongue tissue in 21 patients with SCCOT were analyzed together with tongue biopsies from 14 healthy individuals, which served as the control group. Dividing patients into TAP1-high and TAP1-low groups according to the median TAP1 level in tumor-free samples showed that patients with lower TAP1 mRNA levels in tumor-free samples had better overall (p = 0.003) and disease-free survival (p = 0.002). The results showing that TAP1 levels in tumor-free tongue tissue contralateral to the SCCOT correlate with survival is an important contribution to early diagnosis and follow up of SCCOT.
Bioinformatics Methods in Medical Genetics and Genomics
Authors: Orlov Yuriy L. , Baranova Ancha V. , Tatarinova Tatiana V.
Published: August 2020

Medical genomics relies on next-gen sequencing methods to decipher underlying molecular mechanisms of gene expression. This special issue collects materials originally presented at the “Centenary of Human Population Genetics” Conference-2019, in Moscow. Here we present some recent developments in computational methods tested on actual medical genetics problems dissected through genomics, transcriptomics and proteomics data analysis, gene networks, protein–protein interactions and biomedical literature mining. We have selected materials based on systems biology approaches, database mining. These methods and algorithms were discussed at the Digital Medical Forum-2019, organized by I.M. Sechenov First Moscow State Medical University presenting bioinformatics approaches for the drug targets discovery in cancer, its computational support, and digitalization of medical research, as well as at “Systems Biology and Bioinformatics”-2019 (SBB-2019) Young Scientists School in Novosibirsk, Russia. Selected recent advancements discussed at these events in the medical genomics and genetics areas are based on novel bioinformatics tools.
The Impact of Ang-(1-9) and Ang-(3-7) on the Biological Properties of Prostate Cancer Cells by Modulation of Inflammatory and Steroidogenesis Pathway Genes
Authors: Domińska Kamila , Kowalska Karolina , Urbanek Kinga Anna , Habrowska-Górczyńska Dominika Ewa , Ochędalski Tomasz , Piastowska Ciesielska Agnieszka Wanda
Published: August 2020

The local renin–angiotensin system (RAS) plays an important role in the pathophysiology of the prostate, including cancer development and progression. The Ang-(1-9) and Ang-(3-7) are the less known active peptides of RAS. This study examines the influence of these two peptide hormones on the metabolic activity, proliferation and migration of prostate cancer cells. Significant changes in MTT dye reduction were observed depending on the type of angiotensin and its concentration as well as time of incubation. Ang-(1-9) did not regulate the 2D cell division of either prostate cancer lines however, it reduced the size of LNCaP colonies formed in soft agar, maybe through down-regulation of the HIF1a gene. Ang-(3-7) increased the number of PC3 cells in the S phase and improved anchorage-independent growth as well as mobility. In this case, a significant increase in MKI67, BIRC5, and CDH-1 gene expression was also observed as well as all members of the NF-kB family. Furthermore, we speculate that this peptide can repress the proliferation of LNCaP cells by NOS3-mediated G2/M cell cycle arrest. No changes in expression of BIRC5 and BCL2/BAX ratio were observed but a decrease mRNA proapoptotic BAD gene was seen. In the both lines, Ang-(3-7) improved ROCK1 gene expression however, increased VEGF and NOS3 mRNA was only seen in the PC3 or LNCaP cells, respectively. Interestingly, it appears that Ang-(1-9) and Ang-(3-7) can modulate the level of steroidogenic enzymes responsible for converting cholesterol to testosterone in both prostate cancer lines. Furthermore, in PC3 cells, Ang-(1-9) upregulated AR expression while Ang-(3-7) upregulated the expression of both estrogen receptor genes. Ang-(1-9) and Ang-(3-7) can impact on biological properties of prostate cancer cells by modulating inflammatory and steroidogenesis pathway genes, among others.
Lipid Dynamics, Identification, and Expression Patterns of Fatty Acid Synthase Genes in an Endoparasitoid, Meteorus pulchricornis (Hymenoptera: Braconidae)
Authors: Wang Jiao , Shen Li-Wei , Xing Xiao-Rong , Xie Yu-Qi , Li Yi-Jiangcheng , Liu Zhi-Xiang , Wang Jun , Wu Fu-An , Sheng Sheng
Published: August 2020

In insect parasitoids, fatty acid synthases (FASs) have received less attention and their roles associated with lipogenesis loss are far from clear. Meteorus pulchricornis is a solitary endoparasitoid wasp of many larvae of lepidopteran pests. The lipid content during developmental stages of M. pulchricornis was measured; it was higher in the larval and pupal stages but declined from six-day-old pupae. Lipid accumulation constantly decreased in the adult stage, even after feeding on honey solutions. To investigate the roles of FASs in lipid synthesis in M. pulchricornis, four FAS genes (MpulFAS1~4) were identified from the transcriptome database of M. pulchricornis. All FAS genes included full-length open reading frames and shared 72–79% similarity with the sequences of Microplitis demolitor. qRT-PCR validation showed that all four FASs had the highest expression after the adult wasps were fed on honey diets. MpulFAS1 and MpulFAS2 reached their expression peaks at the adult stage but MpulFAS3 and MpulFAS4 peaked at the larval stage. To further study the function of FASs, dsRNA injection knocked down the expression of four MpulFASs and resulted in a significant decline of lipid content at the adult stage in M. pulchricornis. Results from this study suggest that M. pulchricornis adults cannot accumulate lipid content effectively and FASs may still contribute to lipid synthesis in the adult stage. This broadens the knowledge on the ability of lipid synthesis in parasitoid wasps and provides insight into the roles of FASs in insects with parasitic life-history traits.
N-Terminal Regions of Prion Protein: Functions and Roles in Prion Diseases
Authors: Hara Hideyuki , Sakaguchi Suehiro
Published: August 2020

The normal cellular isoform of prion protein, designated PrPC, is constitutively converted to the abnormally folded, amyloidogenic isoform, PrPSc, in prion diseases, which include Creutzfeldt-Jakob disease in humans and scrapie and bovine spongiform encephalopathy in animals. PrPC is a membrane glycoprotein consisting of the non-structural N-terminal domain and the globular C-terminal domain. During conversion of PrPC to PrPSc, its 2/3 C-terminal region undergoes marked structural changes, forming a protease-resistant structure. In contrast, the N-terminal region remains protease-sensitive in PrPSc. Reverse genetic studies using reconstituted PrPC-knockout mice with various mutant PrP molecules have revealed that the N-terminal domain has an important role in the normal function of PrPC and the conversion of PrPC to PrPSc. The N-terminal domain includes various characteristic regions, such as the positively charged residue-rich polybasic region, the octapeptide repeat (OR) region consisting of five repeats of an octapeptide sequence, and the post-OR region with another positively charged residue-rich polybasic region followed by a stretch of hydrophobic residues. We discuss the normal functions of PrPC, the conversion of PrPC to PrPSc, and the neurotoxicity of PrPSc by focusing on the roles of the N-terminal regions in these topics.
Synergistic Interactions of 5-Fluorouracil with Inhibitors of Protein Kinase CK2 Correlate with p38 MAPK Activation and FAK Inhibition in the Triple-Negative Breast Cancer Cell Line
Authors: Wińska Patrycja , Karatsai Olena , Staniszewska Monika , Koronkiewicz Mirosława , Chojnacki Konrad , Rędowicz Maria Jolanta
Published: August 2020

Background: The combination effect of 5-fluorouracil (5-FU) with either CX-4945 or a new inhibitor of protein kinase CK2, namely 14B (4,5,6,7-tetrabromo-1-(3-bromopropyl)-2-methyl-1H-benzimidazole), on the viability of MCF-7 and triple-negative MDA-MB-231 breast cancer cell lines was studied. Methods: Combination index (CI) values were determined using an MTT-based assay and the Chou-Talalay model. The effect of the tested drug combinations on pro-apoptotic properties and cell cycle progression was examined using flow cytometry. The activation of FAK, p38 MAPK, and ERK1/2 kinases and the expression of selected pro-apoptotic markers in MDA-MB-231 cell line after the combined treatment were evaluated by the western blot method. Confocal microscopy was used to examine actin network in MDA-MB-231. Results: Our results showed that a synergistic effect (CI < 1) occurred in MDA-MB-231 after treatment with both combinations of 5-FU with 14B or CX-4945, whereas the combination of 5-FU and 14B evoked an antagonistic effect in MCF-7. We conclude that the synergistic interactions (CI < 1) observed for both the combinations of 5-FU and 14B or CX-4945 in MDA-MB-231 correlated with an activation of p38 MAPK, inhibition of FAK, increased expression of apoptogenic markers, prolongation of S-phase of cell cycle, and destabilization of actin network. Conclusions: The obtained results support the recent observation that CK2 inhibitors can improve 5-FU-based anticancer therapy and FAK kinase can be an attractive molecular target in breast cancer therapy.
Update on the Swedish Newborn Screening for Congenital Adrenal Hyperplasia Due to 21-Hydroxylase Deficiency
Authors: Zetterström Rolf H. , Karlsson Leif , Falhammar Henrik , Lajic Svetlana , Nordenström Anna
Published: August 2020

Congenital adrenal hyperplasia (CAH) was the fourth disorder added to the national Swedish neonatal screening program in 1986, and approximately 115,000 newborns are screened annually. Dried blood spot (DBS) screening with measurement of 17-hydroxyprogesterone (17OHP) is also offered to older children moving to Sweden from countries lacking a national DBS screening program. Here, we report an update on the CAH screening from January 2011 until December 2019. Results: During the study period, 1,030,409 newborns and 34,713 older children were screened. In total, 87 newborns were verified to have CAH, which gives an overall positive predictive value (PPV) of 11% and 21% for term infants. Including the five missed CAH cases identified during this period, this gives an incidence of 1:11,200 of CAH in Sweden. Among the older children, 12 of 14 recalled cases were found to be true positive for CAH. All patients were genotyped as part of the clinical follow-up and 70% of the newborns had salt wasting (SW) CAH and 92% had classic CAH (i.e., SW and simple virilizing (SV) CAH). In the group of 12 older children, none had SW CAH and two had SV CAH. Conclusion: The incidence of classic CAH is relatively high in Sweden. Early genetic confirmation with CYP21A2 genotyping has been a valuable complement to the analysis of 17OHP to predict disease severity, make treatment decisions and for the follow-up and evaluation of the screening program.
Utility of Leptomeningeal Collaterals in Predicting Intracranial Atherosclerosis-Related Large Vessel Occlusion in Endovascular Treatment
Authors: Baek Jang-Hyun , Kim Byung Moon , Kim Jin Woo , Kim Dong Joon , Heo Ji Hoe , Nam Hyo Suk , Kim Young Dae
Published: August 2020

Earlier or preprocedural identification of occlusion pathomechanism is crucial for effective endovascular treatment. As leptomeningeal collaterals tend to develop well in chronic ischemic conditions such as intracranial atherosclerosis (ICAS), we investigated whether leptomeningeal collaterals can be a preprocedural marker of ICAS-related large vessel occlusion (ICAS-LVO) in endovascular treatment. A total of 226 patients who underwent endovascular treatment were retrospectively reviewed. We compared the pattern of leptomeningeal collaterals between patients with ICAS-LVO and without. Leptomeningeal collaterals were assessed by preprocedural computed tomography angiography (CTA) and basically categorized by three different collateral assessment methods. Better leptomeningeal collaterals were significantly associated with ICAS-LVO, although they were not independent for ICAS-LVO. When leptomeningeal collaterals were dichotomized to incomplete (<100%) and complete (100%), the latter was significantly more frequent in patients with ICAS-LVO (52.5% versus 20.4%) and remained an independent factor for ICAS-LVO (odds ratio, 3.32; 95% confidence interval, 1.52–7.26; p = 0.003). The area under the curve (AUC) value of complete leptomeningeal collateral supply was 0.660 for discrimination of ICAS-LVO. Incomplete leptomeningeal collateral supply was not likely ICAS-LVO, based on the high negative predictive value (88.6%). Considering its negative predictive value and the independent association between complete leptomeningeal collateral supply and ICAS-LVO, leptomeningeal collaterals could be helpful in the preprocedural determination of occlusion pathomechanism.
Microbiome Patterns in Matched Bile, Duodenal, Pancreatic Tumor Tissue, Drainage, and Stool Samples: Association with Preoperative Stenting and Postoperative Pancreatic Fistula Development
Authors: Langheinrich Melanie , Wirtz Stefan , Kneis Barbara , Gittler Matthias M. , Tyc Olaf , Schierwagen Robert , Brunner Maximilian , Krautz Christian , Weber Georg F. , Pilarsky Christian , Trebicka Jonel , Agaimy Abbas , Grützmann Robert , Kersting Stephan
Published: August 2020

Postoperative complications after pancreatic surgery are still a significant problem in clinical practice. The aim of this study was to characterize and compare the microbiomes of different body compartments (bile duct, duodenal mucosa, pancreatic tumor lesion, postoperative drainage fluid, and stool samples; preoperative and postoperative) in patients undergoing pancreatic surgery for suspected pancreatic cancer, and their association with relevant clinical factors (stent placement, pancreatic fistula, and gland texture). For this, solid (duodenal mucosa, pancreatic tumor tissue, stool) and liquid (bile, drainage fluid) biopsy samples of 10 patients were analyzed using 16s rRNA gene next-generation sequencing. Our analysis revealed: (i) a distinct microbiome in the different compartments, (ii) markedly higher abundance of Enterococcus in patients undergoing preoperative stent placement in the common bile duct, (iii) significant differences in the beta diversity between patients who developed a postoperative pancreatic fistula (POPF B/C), (iv) patients with POPF B/C were more likely to have bacteria belonging to the genus Enterococcus, and (v) differences in microbiome composition with regard to the pancreatic gland texture. The structure of the microbiome is distinctive in different compartments, and can be associated with the development of a postoperative pancreatic fistula.
Structured Care and Self-Management Education for Persons with Parkinson’s Disease: Why the First Does Not Go without the Second—Systematic Review, Experiences and Implementation Concepts from Sweden and Germany
Authors: Tennigkeit Jenny , Feige Tim , Haak Maria , Hellqvist Carina , Seven Ümran S. , Kalbe Elke , Schwarz Jaqueline , Warnecke Tobias , Tönges Lars , Eggers Carsten , Loewenbrück Kai F.
Published: August 2020

Integrated care is regarded as a key for care delivery to persons with chronic long-term conditions such as Parkinson’s disease. For persons with Parkinson’s disease, obtaining self-management support is a top priority in the context of integrated care. Self-management is regarded as a crucial competence in chronic diseases since the affected persons and their caregivers inevitably take up the main responsibility when it comes to day-to-day management. Formal self-management education programs with the focus on behavioral skills relevant to the induction and maintenance of behavioral change have been implemented as a standard in many chronic long-term conditions. However, besides the example of the Swedish National Parkinson School, the offers for persons with Parkinson’s disease remain fragmented and limited in availability. Today, no such program is implemented as a nationwide standard in Germany. This paper provides (1) a systematic review on structured self-management education programs specifically designed or adopted for persons with Parkinson’s disease, (2) presents the Swedish National Parkinson School as an example for a successfully implemented nationwide program and (3) presents a concept for the design, evaluation and long-term implementation of a future-orientated self-management education program for persons with Parkinson’s disease in Germany.
Col11a1a Expression Is Required for Zebrafish Development
Authors: Hardy Makenna J. , Reeck Jonathon C. , Fang Ming , Adams Jason S. , Oxford Julia Thom
Published: August 2020

The autosomal dominant chondrodystrophies, the Stickler type 2 and Marshall syndromes, are characterized by facial abnormalities, vision deficits, hearing loss, and articular joint issues resulting from mutations in COL11A1. Zebrafish carry two copies of the Col11a1 gene, designated Col11a1a and Col11a1b. Col11a1a is located on zebrafish chromosome 24 and Col11a1b is located on zebrafish chromosome 2. Expression patterns are distinct for Col11a1a and Col11a1b and Col11a1a is most similar to COL11A1 that is responsible for human autosomal chondrodystrophies and the gene responsible for changes in the chondrodystrophic mouse model cho/cho. We investigated the function of Col11a1a in craniofacial and axial skeletal development in zebrafish using a knockdown approach. Knockdown revealed abnormalities in Meckel’s cartilage, the otoliths, and overall body length. Similar phenotypes were observed using a CRISPR/Cas9 gene-editing approach, although the CRISPR/Cas9 effect was more severe compared to the transient effect of the antisense morpholino oligonucleotide treatment. The results of this study provide evidence that the zebrafish gene for Col11a1a is required for normal development and has similar functions to the mammalian COL11A1 gene. Due to its transparency, external fertilization, the Col11a1a knockdown, and knockout zebrafish model systems can, therefore, contribute to filling the gap in knowledge about early events during vertebrate skeletal development that are not as tenable in mammalian model systems and help us understand Col11a1-related early developmental events.
Addressing the Confusion within Periodization Research
Authors: Hornsby W. Guy , Fry Andrew C. , Haff G. Gregory , Stone Michael H.
Published: August 2020

In this editorial, we focus on recent problematic developments in sport science, and more specifically, problems related to periodization research. Primary areas discussed are (1) appreciation of history, (2) considerations for training studies, (3) the development of concepts, and (4) programming-driven training models.
Satellite and In Situ Monitoring of Chl-a, Turbidity, and Total Suspended Matter in Coastal Waters: Experience of the Year 2017 along the French Coasts
Authors: Gohin Francis , Bryère Philippe , Lefebvre Alain , Sauriau Pierre-Guy , Savoye Nicolas , Vantrepotte Vincent , Bozec Yann , Cariou Thierry , Conan Pascal , Coudray Sylvain , Courtay Gaelle , Françoise Sylvaine , Goffart Anne , Hernández Fariñas Tania , Lemoine Maud , Piraud Aude , Raimbault Patrick , Rétho Michael
Published: August 2020

The consistency of satellite and in situ time series of Chlorophyll-a (Chl-a), Turbidity and Total Suspended Matters (TSM) was investigated at 17 coastal stations throughout the year 2017. These stations covered different water types, from relatively clear waters in the Mediterranean Sea to moderately turbid regions in the Bay of Biscay and the southern bight of the North-Sea. Satellite retrievals were derived from MODIS/AQUA, VIIRS/NPP and OLCI-A/Sentinel-3 spectral reflectance. In situ data were obtained from the coastal phytoplankton networks SOMLIT (CNRS), REPHY (Ifremer) and associated networks. Satellite and in situ retrievals of the year 2017 were compared to the historical seasonal cycles and percentiles, 10 and 90, observed in situ. Regarding the sampling frequency in the Mediterranean Sea, a weekly in situ sampling allowed all major peaks in Chl-a caught from space to be recorded at sea, and, conversely, all in situ peaks were observed from space in a frequently cloud-free atmosphere. In waters of the Eastern English Channel, lower levels of Chl-a were observed, both in situ and from space, compared to the historical averages. However, despite a good overall agreement for low to moderate biomass, the satellite method, based on blue and green wavelengths, tends to provide elevated and variable Chl-a in a high biomass environment. Satellite-derived TSM and Turbidity were quite consistent with in situ measurements. Moreover, satellite retrievals of the water clarity parameters often showed a lower range of variability than their in situ counterparts did, being less scattered above and under the seasonal curves of percentiles 10 and 90.
Adaptation to Land Degradation in Southeast Vietnam
Authors: Gobin Anne , Hien Le Thi Thu , Hai Le Trinh , Linh Pham Ha , Thang Nguyen Ngoc , Vinh Pham Quang
Published: August 2020

A framework was developed to elucidate (1) the drivers of land degradation, (2) pressures, (3) local impacts and vulnerabilities and (4) adaptation strategies. The combination of participatory approaches, statistical data analysis, time series Landsat imagery and spatial data mining was tested in southeast Vietnam where the impacts of land degradation on the environment and economy are considerable. The major drivers of land degradation are climate, notably drought, and population density. The pressures include natural resource management and land use/cover change. A Landsat archive analysis showed an increase in agricultural land use from 31% to 50%, mostly at the expense of forests, from 1990 to 2019. Farmers adapted by investing in the irrigation of rice and dragon fruit, and by selecting their rainfed crops in line with the changing environment. The most vulnerable were the rural poor and farmers without access to land and water resources. The best protection against land degradation was prosperity, which is enhanced by the region’s location along Vietnam’s major national route, connecting major cities along a north–south axis. Our analysis shows that southeast Vietnam emerged as a region with an important human ecological resilience strengthened by increased prosperity. The current adaptation options and limitations warrant further research.
A Cost-Effective Person-Following System for Assistive Unmanned Vehicles with Deep Learning at the Edge
Authors: Boschi Anna , Salvetti Francesco , Mazzia Vittorio , Chiaberge Marcello
Published: August 2020

The vital statistics of the last century highlight a sharp increment of the average age of the world population with a consequent growth of the number of older people. Service robotics applications have the potentiality to provide systems and tools to support the autonomous and self-sufficient older adults in their houses in everyday life, thereby avoiding the task of monitoring them with third parties. In this context, we propose a cost-effective modular solution to detect and follow a person in an indoor, domestic environment. We exploited the latest advancements in deep learning optimization techniques, and we compared different neural network accelerators to provide a robust and flexible person-following system at the edge. Our proposed cost-effective and power-efficient solution is fully-integrable with pre-existing navigation stacks and creates the foundations for the development of fully-autonomous and self-contained service robotics applications.
Can the Double Exchange Cause Antiferromagnetic Spin Alignment?
Authors: Palii Andrew , Clemente-Juan Juan M. , Aldoshin Sergey , Korchagin Denis , Golosov Evgenii , Zilberg Shmuel , Tsukerblat Boris
Published: August 2020

The effect of the double exchange in a square-planar mixed-valence dn+1−dn+1−dn−dn–type tetramers comprising two excess electrons delocalized over four spin cores is discussed. The detailed analysis of a relatively simple d2−d2−d1−d1–type tetramer shows that in system with the delocalized electronic pair the double exchange is able to produce antiferromagnetic spin alignment. This is drastically different from the customary ferromagnetic effect of the double exchange which is well established for mixed-valence dimers and tetramers with one excess electron or hole. That is why the question “Can double exchange cause antiferromagnetic spin alignment?” became the title of this article. As an answer to this question the qualitative and quantitative study revealed that due to antiparallel directions of spins of the two mobile electrons which give competitive contributions to the overall polarization of spin cores, the system entirely becomes antiferromagnetic. It has been also shown that depending on the relative strength of the second-order double exchange and Heisenberg–Dirac–Van Vleck exchange the system has either the ground localized spin-triplet or the ground delocalized spin-singlet.
An Analytical Method for the Longitudinal Vibration of a Large-Diameter Pipe Pile in Radially Heterogeneous Soil Based on Rayleigh–Love Rod Model
Authors: Liang Zhimeng , Cui Chunyi , Meng Kun , Xin Yu , Pei Huafu , Wang Benlong
Published: August 2020

Based on the Rayleigh–Love rod model and Novak’s plane-strain theory, an analytical method for the longitudinal vibration of a large-diameter pipe pile in radially heterogeneous soil is proposed. Firstly, the governing equations of the pile-soil system are established by taking both the construction disturbance effect and transverse inertia effect into account. Secondly, the analytical solution of longitudinal dynamic impedance at the pile top can be achieved by using Laplace transform and complex stiffness transfer techniques. Thirdly, the present analytical solution for dynamic impedance can also be performed in contrast with the existing solution to examine the correctness of the analytical method in this work. Further, the effect of pile Poisson’s ratio, pile diameter ratio as well as soil disturbed degree on the dynamic impedance are investigated. The results demonstrate that the Rayleigh–Love rod is appropriate for simulating the vibration of a large-diameter pipe pile in heterogeneous soils.
A Pinching Theorem for Compact Minimal Submanifolds in Warped Products I×fSm(c)
Authors: Zhan Xin , Hou Zhonghua
Published: August 2020

Let Sm(c) be a Euclidean sphere of curvature c>0 and R be a Euclidean line. We prove a pinching theorem for compact minimal submanifolds immersed in Riemannian warped products of the type I×fSm(c), where f:I→R+ is a smooth positive function on an open interval I of R. This allows us to generalize Chen-Cui’s pinching theorem from Riemannian products Sm(c)×R to Riemannian warped products I×fSm(c).
Enhancing the Security of Deep Learning Steganography via Adversarial Examples
Authors: Shang Yueyun , Jiang Shunzhi , Ye Dengpan , Huang Jiaqing
Published: August 2020

Steganography is a collection of techniques for concealing the existence of information by embedding it within a cover. With the development of deep learning, some novel steganography methods have appeared based on the autoencoder or generative adversarial networks. While the deep learning based steganography methods have the advantages of automatic generation and capacity, the security of the algorithm needs to improve. In this paper, we take advantage of the linear behavior of deep learning networks in higher space and propose a novel steganography scheme which enhances the security by adversarial example. The system is trained with different training settings on two datasets. The experiment results show that the proposed scheme could escape from deep learning steganalyzer detection. Besides, the produced stego could extract secret image with less distortion.
Analysis and Comparison of Fuzzy Models and Observers for DC-DC Converters Applied to a Distillation Column Heating Actuator
Authors: Heras-Cervantes Mario , Téllez-Anguiano Adriana del Carmen , Anzurez-Marín Juan , Espinosa-Juárez Elisa
Published: August 2020

In this paper, as an introduction, the nonlinear model of a distillation column is presented in order to understand the fundamental paper that the column heating actuator has in the distillation process dynamics as well as in the quality and safety of the process. In order to facilitate the implementation control strategies to maintain the heating power regulated in the distillation process, it is necessary to represent adequately the heating power actuator behavior; therefore, three different models (switching, nonlinear and fuzzy Takagi–Sugeno) of a DC-DC Buck-Boost power converter, selected to regulate the electric power regarding the heating power, are presented and compared. Considering that the online measurements of the two main variables of the converter, the inductor current and the capacitor voltage, are not always available, two different fuzzy observers (with and without sliding modes) are developed to allow monitoring the physical variables in the converter. The observers response is compared to determine which has a better performance. The role of the observer in estimating the state variables with the purpose of using them in the sensors fault diagnosis, using the analytical redundancy concept, likewise, from the estimation of these variables other non-measurable can be determined; for example, the caloric power. The stability analysis and observers gains are obtained by linear matrix inequalities (LMIs). The observers are validated by MATLAB® simulations to verify the observers convergence and analyze their response under system disturbances.
Insights into the Vertical Stratification of Microbial Ecological Roles across the Deepest Seawater Column on Earth
Authors: Xue Chun-Xu , Liu Jiwen , Lea-Smith David J. , Rowley Gary , Lin Heyu , Zheng Yanfen , Zhu Xiao-Yu , Liang Jinchang , Ahmad Waqar , Todd Jonathan D. , Zhang Xiao-Hua
Published: August 2020

The Earth’s oceans are a huge body of water with physicochemical properties and microbial community profiles that change with depth, which in turn influences their biogeochemical cycling potential. The differences between microbial communities and their functional potential in surface to hadopelagic water samples are only beginning to be explored. Here, we used metagenomics to investigate the microbial communities and their potential to drive biogeochemical cycling in seven different water layers down the vertical profile of the Challenger Deep (0–10,500 m) in the Mariana Trench, the deepest natural point in the Earth’s oceans. We recovered 726 metagenome-assembled genomes (MAGs) affiliated to 27 phyla. Overall, biodiversity increased in line with increased depth. In addition, the genome size of MAGs at ≥4000 m layers was slightly larger compared to those at 0–2000 m. As expected, surface waters were the main source of primary production, predominantly from Cyanobacteria. Intriguingly, microbes conducting an unusual form of nitrogen metabolism were identified in the deepest waters (>10,000 m), as demonstrated by an enrichment of genes encoding proteins involved in dissimilatory nitrate to ammonia conversion (DNRA), nitrogen fixation and urea transport. These likely facilitate the survival of ammonia-oxidizing archaea α lineage, which are typically present in environments with a high ammonia concentration. In addition, the microbial potential for oxidative phosphorylation and the glyoxylate shunt was enhanced in >10,000 m waters. This study provides novel insights into how microbial communities and their genetic potential for biogeochemical cycling differs through the Challenger deep water column, and into the unique adaptive lifestyle of microbes in the Earth’s deepest seawater.
Diagnosis of Osteoarticular Tuberculosis: Perceptions, Protocols, Practices, and Priorities in the Endemic and Non-Endemic Areas of the World—A WAIOT View
Authors: Agashe Vikas M. , Johari Ashok N. , Shah Mudit , Anjum Rashid , Romano Carlo , Drago Lorenzo , Sharma Hemant K. , Benzakour Thami
Published: August 2020

There has been a major resurgence of tuberculosis (TB) and drug-resistant tuberculosis in the last few decades. Although it has been brought under control in most Western countries, it is still a major cause of death in endemic regions like India. Osteoarticular tuberculosis (OA TB) forms a small proportion of the total cases of tuberculosis. Perceptions and practices of orthopedic surgeons are entirely different in endemic and non-endemic regions around the world, due to the vast difference in exposure. Literature from endemic areas puts stress on clinico-radiological diagnosis and empirical anti-tubercular treatment (ATT). Such practices, although non-invasive, simple to implement, and economical, carry a significant risk of missing TB mimics and developing drug resistance. However, OA TB is still perceived as a “diagnostic enigma” in non-endemic regions, leading to a delay in diagnosis. Hence, a high index of suspicion, especially in a high-risk population, is needed to improve the diagnosis. Evolving drug resistance continues to thwart efforts to control the disease globally. This review article discusses the perceptions and practices in different parts of the world, with India as an example of the endemic world, and lays down priorities for overcoming the challenges of diagnosing osteoarticular TB.
The Infant-Derived Bifidobacterium bifidum Strain CNCM I-4319 Strengthens Gut Functionality
Authors: Martín Rebeca , Bottacini Francesca , Egan Muireann , Chamignon Celia , Tondereau Valérie , Moriez Raphaël , Knol Jan , Langella Philippe , Eutamene Hélène , Smokvina Tamara , van Sinderen Douwe
Published: August 2020

Bifidobacteria are among the first colonisers of the gastrointestinal tract of breast-fed newborns due to, among other things, their ability to metabolise oligosaccharides naturally occurring in human milk. The presence of bifidobacteria in the infant gut has been shown to promote intestinal health and homeostasis as well as to preserve a functional gut barrier, thus positively influencing host health and well-being. Among human-associated gut commensals, Bifidobacterium bifidum has been described as the only species capable of the extracellular degradation of both mucin-type glycans and HMOs, thereby giving this species a special role as a commensal gut forager of both host and diet-derived glycans. In the present study, we assess the possible beneficial properties and probiotic potential of B. bifidum strain CNCM I-4319. In silico genome analysis and growth experiments confirmed the expected ability of this strain to consume HMOs and mucin. By employing various animal models, we were also able to assess the ability of B. bifidum CNCM I-4319 to preserve gut integrity and functionality from stress-induced and inflammatory damage, thereby enforcing its potential as an effective probiotic strain.
Monitoring and Optimization of Cupuaçu Seed Fermentation, Drying and Storage Processes
Authors: Souza Joana M. L. , Rocha João M. , Cartaxo Cleísa B. C. , Vasconcelos Marcus A. M. , Álvares Virginia S. , Nascimento Matheus M. , Yomura Renata T. B. , Kaefer Simara
Published: August 2020

Cupuaçu [Theobroma grandiflorum (Wild ex Spreng.) K. Schum] seeds have been employed for a long time in the Amazon region for food purposes. Similar to cocoa, processed cupuaçu pulp and seeds can be used to produce juices, ice creams, confectionary products and cupulate®, which is a similar product to chocolate. However, its market penetration requires the mastery of all processing stages to improve the food quality and safety and to make possible an efficient technology transfer to the local small farmers and communities. Based on the above, the current research work aimed at monitoring and optimizing the consecutive fermentation and drying processes of cupuaçu seeds over 7 days each, as well as storage for 90 days. A greenhouse structure incorporating the fermenter and solar drying terrace was designed to be inexpensive, versatile, easily scalable, and easy to maintain and operate by the local small farmers after a short period of training. This research effort also aimed at giving a vision for the future creation of an integrative and sustainable cupuaçu system covering the economic, social, cultural and environmental vectors. The experimental design comprised 5 batches of 100 kg of seeds each. Several microbiological and physicochemical parameters were performed and correlated with processing variables. Microbiological parameters encompassed viable counts of mesophilic microorganisms, coliforms, yeasts, and molds, whereas physicochemical measures included fermentation and drying temperature, pH, acidity, dry matter, ashes, water activity, color, total proteins, lipids and carbohydrates, and energy. The average seed fermentation temperature varied from ca. 28 to 44 °C, reaching the maximum on day 3 and a final value of ca. 31 °C. Regarding solar drying, the average seed temperatures ranged from ca. 24 °C (at the end) to 39 °C on day 3, and an initial value of ca. 29 °C. The average final seed pH value of drying was 5.34 and was kept during storage. During storage, results demonstrated the existence of significant correlations among several experimental parameters under scrutiny. Finally, bean viable counts obtained during storage unfolded acceptable values of total mesophilic bacteria well below the maximum limit. Viable counts of yeast and molds were generally found between 3 and 4 log(CFU/gsample), and total coliforms were also detected, although both were at acceptable levels and well beneath the established maximum limits for food safety.
Probiotics as a Coadjuvant Factor in Active or Quiescent Inflammatory Bowel Disease of Adults—A Meta-Analytical Study
Authors: Pabón-Carrasco Manuel , Ramirez-Baena Lucia , Vilar-Palomo Samuel , Castro-Méndez Aurora , Martos-García Raúl , Rodríguez-Gallego Isabel
Published: August 2020

(1) Background: Inflammatory bowel diseases are pathologies of unknown etiology and auto-immune pathogenia. The use of probiotics is studied in order to increase the arsenal of treatments. The aim was to assess the efficacy of the probiotics in these diseases in the active or quiescent phases; (2) Methods: A systematic review with meta-analysis was performed by an exhaustive bibliographic search in Medline, Cinahl, Embase, Scopus, Web of Science, and Cochrane Library. The inclusion criteria were studies of more than 10 years, English/Spanish, clinical trials, and involving human beings. Relative risk was used to compare efficacy, which was meta-analyzed using a fixed effects model. Heterogeneity was evaluated with the Higgins I2 test; (3) Results: Nineteen studies were included in the systematic review and 17 in the meta-analysis, with a total of 1537 patients (nexperimental group = 762; nplacebo group = 775). There are significant remission differences in ulcerative colitis (relative risk (RR) = 0.81; 95% CI = 0.72–0.91; I2 = 32%; p = 0.16). However, no significant differences were found in the use of probiotics for the prevention of ulcerative colitis, and for the remission of Crohn’s disease; (4) Conclusions: There are data showing an additional beneficial effect of probiotics on active ulcerative colitis. More and better studies are needed which assess its possible therapeutic efficacy for quiescent ulcerative colitis and for Crohn’s disease.
Antenatal Iron-Folic Acid Supplementation Is Associated with Improved Linear Growth and Reduced Risk of Stunting or Severe Stunting in South Asian Children Less than Two Years of Age: A Pooled Analysis from Seven Countries
Authors: Nisar Yasir Bin , Aguayo Victor M. , Billah Sk Masum , Dibley Michael J.
Published: August 2020

In South Asia, an estimated 38% of preschool-age children have stunted growth. We aimed to assess the effect of WHO-recommended antenatal iron, and folic acid (IFA) supplements on smaller than average birth size and stunting in South Asian children <2 years old. The sample was 96,512 mothers with their most recent birth within two years, from nationally representative surveys between 2005 and 2016 in seven South Asian countries. Primary outcomes were stunting [length-for-age Z-score (LAZ) < –2], severe stunting [length-for-age Z-score (LAZ) < –3], length-for-age Z score, and perceived smaller than average birth size. Exposure was the use of IFA supplements. We conducted analyses with Poisson, linear and logistic multivariate regression adjusted for the cluster survey design, and 14 potential confounders covering the country of the survey, socio-demographic factors, household economic status, maternal characteristics, and duration of respondent recall. The prevalence of stunting was 33%, severe stunting was 14%, and perceived smaller than average birth size was 22%. Use of antenatal IFA was associated with a reduced adjusted risk of being stunted by 8% (aRR 0.92, 95% CI 0.89, 0.95), of being severely stunted by 9% (aRR 0.91, 95% CI 0.86, 0.96) and of being smaller than average birth size by 14% (aRR 0.86, 95% CI 0.80, 0.91). The adjusted mean LAZ was significantly higher in children whose mothers used IFA supplements. Maternal use of IFA in the first four months gestation and consuming 120 or more supplements throughout pregnancy was associated with the largest reduction in risk of child stunting. Antenatal IFA supplementation was associated with a significantly reduced risk of stunting, severe stunting, and smaller than average perceived birth size and improved LAZ in young South Asian children. The early and sustained use of antenatal IFA has the potential to improve child growth outcomes in South Asia and other low-and-middle-income countries with high levels of iron deficiency in pregnancy.