bluuebunny/crossref_metadata_2025 huggingface dataset:
Supplemental Material and Methods, Tables S1-S6, Figure S1 from Investigation of Dietary Factors and Endometrial Cancer Risk Using a Nutrient-wide Association Study Approach in the EPIC and Nurses' Health Study (NHS) and NHSII
Authors: Merritt Melissa A. , Tzoulaki Ioanna , Tworoger Shelley S. , De Vivo Immaculata , Hankinson Susan E. , Fernandes Judy , Tsilidis Konstantinos K. , Weiderpass Elisabete , Tjønneland Anne , Petersen Kristina E.N. , Dahm Christina C. , Overvad Kim , Dossus Laure , Boutron-Ruault Marie-Christine , Fagherazzi Guy , Fortner Renée T. , Kaaks Rudolf , Aleksandrova Krasimira , Boeing Heiner , Trichopoulou Antonia , Bamia Christina , Trichopoulos Dimitrios , Palli Domenico , Grioni Sara , Tumino Rosario , Sacerdote Carlotta , Mattiello Amalia , Bueno-de-Mesquita H.B(as). , Onland-Moret N. Charlotte , Peeters Petra H. , Gram Inger T. , Skeie Guri , Quirós J. Ramón , Duell Eric J. , Sánchez María-José , Salmerón D. , Barricarte Aurelio , Chamosa Saioa , Ericson Ulrica , Sonestedt Emily , Nilsson Lena Maria , Idahl Annika , Khaw Kay-Tee , Wareham Nicholas , Travis Ruth C. , Rinaldi Sabina , Romieu Isabelle , Patel Chirag J. , Riboli Elio , Gunter Marc J.
Published: April 2023

Supplemental Material and Methods, Tables S1-S6, Figure S1 Supplemental Table S1. Hazard Ratiosa and 95% CIs from analyses of nutrient and food intakes (FDRâ‰¤0.10) reported in the baseline dietary assessment in relation to endometrial cancer risk in the EPIC study. Supplemental Table S2. Hazard Ratiosa and 95% CIs from analyses of intake of nutrients/foods at baseline (FDR > 0.10) in relation to endometrial cancer risk in the EPIC study. Supplemental Table S3. Age-standardized dietary intake of selected foods/nutrients (FDRâ‰¤0.10 in the EPIC studya) at the study baseline in the EPIC, NHS and NHSII study populations. Supplemental Table S4. Hazard Ratiosa and 95% CIs from analyses of intake of selected nutrients/foods at baseline in relation to endometrial cancer risk in the Nursesâ€™ Health Study (NHS) and NHSII. Supplemental Table S5. Hazard Ratiosa and 95% CIs from analyses of the cumulative average intake of selected nutrients/foods in relation to endometrial cancer risk in the Nursesâ€™ Health Study (NHS) and NHSII. Supplemental Table S6. Hazard Ratiosa and 95% CIs from analyses of the cumulative average intake of selected nutrients/foods in relation to invasive endometrial adenocarcinoma risk in the Nursesâ€™ Health Study (NHS) and NHSII. Supplemental Figure S1. Summary of NWAS analytical method to test associations between food and nutrient intake and risk of endometrial cancer (EC.
Supplementary Table 1 from Differences in Gene and Protein Expression and the Effects of Race/Ethnicity on Breast Cancer Subtypes
Authors: Chavez-MacGregor Mariana , Liu Shuying , De Melo-Gagliato Debora , Chen Huiqin , Do Kim-Anh , Pusztai Lajos , Fraser Symmans W. , Nair Lakshmy , Hortobagyi Gabriel N. , Mills Gordon B. , Meric-Bernstam Funda , Gonzalez-Angulo Ana M.
Published: April 2023

XLSX - 25KB, RPPA Antibody List.
Supplementary Figures S1-3, Tables S1-4 from Racial Variation in Breast Tumor Promoter Methylation in the Carolina Breast Cancer Study
Authors: Conway Kathleen , Edmiston Sharon N. , Tse Chiu-Kit , Bryant Christopher , Kuan Pei Fen , Hair Brionna Y. , Parrish Eloise A. , May Ryan , Swift-Scanlan Theresa
Published: April 2023

Supplementary Figures S1-3, Tables S1-4. Supplemental Figure S1. Racial differences in breast tumor methylation at candidate CpG probes when race is self-reported or defined by AIMs markers. Supplemental Figure S2. Methylation detected at KCNK4 and DSC2 by the GoldenGate Cancer Panel I array or quantitative methylation-specific PCR. Supplemental Figure S3. Kaplan-Meier plots showing disease-specific survival in AAs and non-AAs according to tumor methylation level for the top probes varying by race. Cases were divided into three methylation groups (high, intermediate, low) based on beta values in the combined dataset, and Kaplan-Meier plots were generated within AAs and non-AAs. Log-rank p-values are given for differences according to methylation level within each racial group. Supplemental Table S1. Reported genomic variants overlapping CpG probes and their frequencies by ancestry Supplemental Table S2. CpGs significantly differentially methylated by race in HR+ or HR- breast tumors Supplemental Table S3. Correlation between 450K CpG methylation and gene expression in TCGA breast tumors for genes showing differential methylation by race in CBCS Supplemental Table S4. Comparison of methylation in lymphoblastoid cell lines from African Americans and Caucasian Americans
Supplementary Data and Supplementary Tables 1 and 2 from Genetic Predictors of Circulating 25-Hydroxyvitamin D and Risk of Colorectal Cancer
Authors: Hiraki Linda T. , Qu Conghui , Hutter Carolyn M. , Baron John A. , Berndt Sonja I. , Bézieau Stéphane , Brenner Hermann , Caan Bette J. , Casey Graham , Chang-Claude Jenny , Chanock Stephen J. , Conti David V. , Duggan David , Fuchs Charles S. , Gallinger Steven , Giovannucci Edward L. , Harrison Tabitha A. , Hayes Richard B. , Hazra Aditi , Henderson Brian , Hoffmeister Michael , Hopper John L. , Hudson Thomas J. , Jenkins Mark A. , Küry Sébastien , Le Marchand Loic , Lemire Mathieu , Ma Jing , Manson JoAnn E. , Nan Hongmei , Newcomb Polly A. , Ng Kimmie , Potter John D. , Schoen Robert E. , Schumacher Fredrick R. , Seminara Daniela , Slattery Martha L. , Wactawski-Wende Jean , White Emily , Wu Kana , Zanke Brent W. , Kraft Peter , Peters Ulrike , Chan Andrew T.
Published: April 2023

Contains more detailed information on the individual cohorts contributing to the study and their genotyping results; Supplemental Tables 1 and 2
Supplementary Table 2 from Drinking Water Arsenic in Northern Chile: High Cancer Risks 40 Years after Exposure Cessation
Authors: Steinmaus Craig M. , Ferreccio Catterina , Romo Johanna Acevedo , Yuan Yan , Cortes Sandra , Marshall Guillermo , Moore Lee E. , Balmes John R. , Liaw Jane , Golden Todd , Smith Allan H.
Published: April 2023

PDF file - 31K - Bladder and lung cancer odds ratios including only cases with histologic confirmation, in non-proxy subjects, and in males and females comparing subjects in the upper to lower quartiles of average lifetime arsenic concentration prior to 1971 (the end of the high exposure period in Antofagasta)
Supplementary Tables 1 through 4 from Associations between 25 Lung Cancer Risk–Related SNPs and Polycyclic Aromatic Hydrocarbon–Induced Genetic Damage in Coke Oven Workers
Authors: Dai Xiayun , Deng Siyun , Wang Tian , Qiu Gaokun , Li Jun , Yang Binyao , Feng Wei , He Xiaosheng , Deng Qifei , Ye Jian , Zhang Wangzhen , He Meian , Zhang Xiaomin , Guo Huan , Wu Tangchun
Published: April 2023

PDF - 141K, Table S1. The relationships of age groups, gender, and smoking status to the levels of PAH metabolites, BPDE-Alb Adducts and genetic damage. Table S2. Levels of genetic damage in coke oven workers according to lung cancer risk-related SNPs. Table S3. Spearman correlations between genetic damage and potentially influential variables in coke oven workers. Tables S4. Relationships of internal exposure to PAHs and lung cancer risk-related SNPs to genetic damage of coke oven workers.
Supplemental Tables S1-2 from The Contribution of Mammography Screening to Breast Cancer Incidence Trends in the United States: An Updated Age–Period–Cohort Model
Authors: Gangnon Ronald E. , Sprague Brian L. , Stout Natasha K. , Alagoz Oguz , Weedon-Fekjær Harald , Holford Theodore R. , Trentham-Dietz Amy
Published: April 2023

Supplemental Tables S1-2. Supplemental Table S1. Case definitionsa for ductal carcinoma in situ (DCIS) and invasive breast cancer cases included in the age-period-cohort model, SEER Program and Connecticut Tumor Registry, 1935-2010. Supplemental Table S2. Rate ratios and 95% confidence intervals of breast cancer according to age, period and cohort.
Supplemental Table 1 from Compensatory Smoking from Gradual and Immediate Reduction in Cigarette Nicotine Content
Authors: Hatsukami Dorothy K. , Donny Eric C. , Koopmeiners Joseph S. , Benowitz Neal L.
Published: April 2023

Supplemental Table 1. Mean (SE) of ratio of reduced nicotine cigarette (RNC) divided by baseline usual brand cigarette (UBC) values for cigarettes per day (CPD), carbon monoxide (CO) and cotinine, respectively. For studies that had a control group of UBC, the ratio of UBC during study period divided by baseline UBC values for CPD, CO and cotinine and also the ratio of RNC/baseline UBC divided by the ratio of UBC during study/baseline UBC (Ratio: RNC/UBC).
Supplementary Tables from Transcriptomic Microenvironment of Lung Adenocarcinoma
Authors: Bossé Yohan , Sazonova Olga , Gaudreault Nathalie , Bastien Nathalie , Conti Massimo , Pagé Sylvain , Trahan Sylvain , Couture Christian , Joubert Philippe
Published: April 2023

Supplementary Tables 1 to 10
Supplementary materials from Evaluation of Buccal Cell Samples for Studies of Oral Microbiota
Authors: Yu Guoqin , Phillips Steve , Gail Mitchell H. , Goedert James J. , Humphrys Michael , Ravel Jacques , Ren Yanfang , Caporaso Neil E.
Published: April 2023

The supplementary materials includes supplementary method, 2 supplementary tables and 2 supplementary figures.
Supplemental Figure 1d from Alcohol Drinking Mediates the Association between Polymorphisms of ADH1B and ALDH2 and Hepatitis B–Related Hepatocellular Carcinoma
Authors: Liu Jessica , Yang Hwai-I , Lee Mei-Hsuan , Jen Chin-Lan , Hu Hui-Han , Lu Sheng-Nan , Wang Li-Yu , You San-Lin , Huang Yen-Tsung , Chen Chien-Jen
Published: April 2023

Principal Component Analysis According to HCC vs. non-HCC cases
Supplemental Figure 1 from Alcohol Drinking Mediates the Association between Polymorphisms of ADH1B and ALDH2 and Hepatitis B–Related Hepatocellular Carcinoma
Authors: Liu Jessica , Yang Hwai-I , Lee Mei-Hsuan , Jen Chin-Lan , Hu Hui-Han , Lu Sheng-Nan , Wang Li-Yu , You San-Lin , Huang Yen-Tsung , Chen Chien-Jen
Published: April 2023

Figure legend for Supplemental Figure 1
SUPPLEMENTAL TABLE 6 from Comparison of Collection Methods for Fecal Samples for Discovery Metabolomics in Epidemiologic Studies
Authors: Loftfield Erikka , Vogtmann Emily , Sampson Joshua N. , Moore Steven C. , Nelson Heidi , Knight Rob , Chia Nicholas , Sinha Rashmi
Published: April 2023

Metabolites in fecal samples collected with FIT tubes that were frozen immediately (day 0) by super and sub metabolic pathway
SUPPLEMENTAL TABLE 3 from Comparison of Collection Methods for Fecal Samples for Discovery Metabolomics in Epidemiologic Studies
Authors: Loftfield Erikka , Vogtmann Emily , Sampson Joshua N. , Moore Steven C. , Nelson Heidi , Knight Rob , Chia Nicholas , Sinha Rashmi
Published: April 2023

Metabolites in fecal samples collected with no solution that were frozen immediately (day 0) by super and sub metabolic pathway
Supplementary Tables 1 - 11 from Comparison of Associations of Body Mass Index, Abdominal Adiposity, and Risk of Colorectal Cancer in a Large Prospective Cohort Study
Authors: Keimling Marlen , Renehan Andrew G. , Behrens Gundula , Fischer Beate , Hollenbeck Albert R. , Cross Amanda J. , Leitzmann Michael F.
Published: April 2023

PDF file - 163K, Table S1: Comparison of baseline characteristics of the overall cohort including 566,401 participants and our analytic cohort including 203,177 participants in the NIH-AARP Diet and Health Study by gender.: Table S2: Correlations of anthropometric parameters in men and women in the NIH-AARP Diet and Health Study.: Table S3: Means and standard deviations of anthropometry parameters in men and women in the NIH-AARP Diet and Health Study.: Table S4: Hazard ratios and 95% confidence intervals for risk of incident rectal cancer by gender across categories of anthropometric measures in the NIH-AARP Diet and Health Study.: Table S5: Hazard ratios and 95% confidence intervals for risk of incident colon cancer across categories of anthropometric measures in women stratified by age in the NIH-AARP Diet and Health Study.: Table S6: Hazard ratios and 95% confidence intervals for risk of incident colon cancer across categories of anthropometric measures in women stratified by colonic sub-site (distal vs. proximal) in the NIH-AARP Diet and Health Study.: Table S7: Hazard ratio, 95% confidence intervals of colon cancer and Δ HR across waist circumference measures in women with current hormone replacement therapy (HRT) use in the NIH-AARP Diet and Health Study.: Table S8: Hazard ratios and 95% confidence intervals for risk of incident colon cancer across categories of anthropometric measures in women stratified by hormone replacement therapy (HRT) use in the NIH-AARP Diet and Health Study.: Table S9: Hazard ratios and 95% confidence intervals for risk of incident rectal cancer across categories of anthropometric measures in women stratified by hormone replacement therapy (HRT) use in the NIH-AARP Diet and Health Study.: Table S10: Hazard ratios and 95% confidence intervals for risk of incident rectal cancer across categories of anthropometric measures in women stratified by hormone replacement therapy (HRT) use in the NIH-AARP Diet and Health Study.: Table S11: Hazard ratios and 95% confidence intervals for risk of incident colon cancer across categories of anthropometric measures in men and women with exclusion of the first 2 years of follow-up in the NIH-AARP Diet and Health Study.
Supplementary Table 1 from Mapping of the IRF8 Gene Identifies a 3′UTR Variant Associated with Risk of Chronic Lymphocytic Leukemia but not Other Common Non-Hodgkin Lymphoma Subtypes
Authors: Slager Susan L. , Achenbach Sara J. , Asmann Yan W. , Camp Nicola J. , Rabe Kari G. , Goldin Lynn R. , Call Timothy G. , Shanafelt Tait D. , Kay Neil E. , Cunningham Julie M. , Wang Alice H. , Weinberg J. Brice , Norman Aaron D. , Link Brian K. , Leis Jose F. , Vachon Celine M. , Lanasa Mark C. , Caporaso Neil E. , Novak Anne J. , Cerhan James R.
Published: April 2023

PDF file - 47K, Association of DLBCL risk with IRF8 sequencing and tagged SNPs located on 16q24.
Supplementary Figure 1 from Mapping of the IRF8 Gene Identifies a 3′UTR Variant Associated with Risk of Chronic Lymphocytic Leukemia but not Other Common Non-Hodgkin Lymphoma Subtypes
Authors: Slager Susan L. , Achenbach Sara J. , Asmann Yan W. , Camp Nicola J. , Rabe Kari G. , Goldin Lynn R. , Call Timothy G. , Shanafelt Tait D. , Kay Neil E. , Cunningham Julie M. , Wang Alice H. , Weinberg J. Brice , Norman Aaron D. , Link Brian K. , Leis Jose F. , Vachon Celine M. , Lanasa Mark C. , Caporaso Neil E. , Novak Anne J. , Cerhan James R.
Published: April 2023

PDF file - 46K, Linkage disequilibrium plot. The numbers in the squares represent D' values and the color represents r2 values (black shading is r2>0.8, dark gray is r2 of 0.67-0.68, and light gray is r2=0.54).
Supplementary tables 1 and 2 from Prediagnostic Physical Activity and Colorectal Cancer Survival: Overall and Stratified by Tumor Characteristics
Authors: Hardikar Sheetal , Newcomb Polly A. , Campbell Peter T. , Win Aung Ko , Lindor Noralane M. , Buchanan Daniel D. , Makar Karen W. , Jenkins Mark A. , Potter John D. , Phipps Amanda I.
Published: April 2023

Supplementary tables 1 and 2. Supplementary Table 1: Characteristics of patients with and without missing data on physical activity in the Seattle Colon Cancer Family Registry, restricted to those with local and regional disease. Supplementary Table 2: Overall and colon cancer-specific survival across categories of prediagnostic physical activity levels (average MET-hours per week) among patients with local and regional disease who had data on at least one tumor molecular characteristic a (n=1043.)
Supplementary Material from Exploring Differences in the Aspirin–Colorectal Cancer Association by Sex and Race/Ethnicity: The Multiethnic Cohort Study
Authors: Park Song-Yi , Wilkens Lynne R. , Kolonel Laurence N. , Monroe Kristine R. , Haiman Christopher A. , Marchand Loïc Le
Published: April 2023

Supplementary Table 1. Association between NSAID use and colorectal cancer risk by duration of use and race/ethnicity in the MEC.
Supplementary Table 2 from Relationships between Circulating and Intraprostatic Sex Steroid Hormone Concentrations
Authors: Cook Michael B. , Stanczyk Frank Z. , Wood Shannon N. , Pfeiffer Ruth M. , Hafi Muhannad , Veneroso Carmela C. , Lynch Barlow , Falk Roni T. , Zhou Cindy Ke , Niwa Shelley , Emanuel Eric , Gao Yu-Tang , Hemstreet George P. , Zolfghari Ladan , Carroll Peter R. , Manyak Michael J. , Sesterhann Isabell A. , Levine Paul H. , Hsing Ann W.
Published: April 2023

Supplementary Table 2: Reproducibility of average tissue hormone assays by zone and overall from a pilot study of 30 men recruited at George Washington University Medical Center that included a total of 171 prostate biopsies.
Supplementary Figure 3 from Genome-Wide Association Study Identifies Possible Genetic Risk Factors for Colorectal Adenomas
Authors: Edwards Todd L. , Shrubsole Martha J. , Cai Qiuyin , Li Guoliang , Dai Qi , Rex Douglas K. , Ulbright Thomas M. , Fu Zhenming , Delahanty Ryan H. , Murff Harvey J. , Smalley Walter , Ness Reid M. , Zheng Wei
Published: April 2023

PDF file - 379K, GWAS SNP QC.
Supplementary Figure 2 from Genome-Wide Association Study Identifies Possible Genetic Risk Factors for Colorectal Adenomas
Authors: Edwards Todd L. , Shrubsole Martha J. , Cai Qiuyin , Li Guoliang , Dai Qi , Rex Douglas K. , Ulbright Thomas M. , Fu Zhenming , Delahanty Ryan H. , Murff Harvey J. , Smalley Walter , Ness Reid M. , Zheng Wei
Published: April 2023

PDF file - 244K, Concordance QC for the TCPS GWAS.
Supplementary Figure S1 from The Cost-Effectiveness of Cervical Self-Sampling to Improve Routine Cervical Cancer Screening: The Importance of Respondent Screening History and Compliance
Authors: Burger Emily A. , Sy Stephen , Nygård Mari , Kim Jane J.
Published: April 2023

Supplementary Figure S1 from The Cost-Effectiveness of Cervical Self-Sampling to Improve Routine Cervical Cancer Screening: The Importance of Respondent Screening History and Compliance
Supplementary Figure 1, Tables 1-2 from Differences in Natural History between Breast Cancers in BRCA1 and BRCA2 Mutation Carriers and Effects of MRI Screening-MRISC, MARIBS, and Canadian Studies Combined
Authors: Heijnsdijk Eveline A.M. , Warner Ellen , Gilbert Fiona J. , Tilanus-Linthorst Madeleine M.A. , Evans Gareth , Causer Petrina A. , Eeles Rosalind A. , Kaas Reinie , Draisma Gerrit , Ramsay Elizabeth A. , Warren Ruth M.L. , Hill Kimberly A. , Hoogerbrugge Nicoline , Wasser Martin N.J.M. , Bergers Elisabeth , Oosterwijk Jan C. , Hooning Maartje J. , Rutgers Emiel J.T. , Klijn Jan G.M. , Plewes Don B. , Leach Martin O. , de Koning Harry J.
Published: April 2023

PDF file - 99K, Transitions in the MISCAN model. From each pre-clinical stage, a tumor may be clinically diagnosed or may grow into the next pre-clinical stage. By applying screening, the tumor may be detected by screening.
Supplementary Tables S1-S3 The association between alcohol consumption and breast density: a systematic review and meta-analysis. from The Association between Alcohol Consumption and Breast Density: A Systematic Review and Meta-analysis
Authors: Ziembicki Stephanie , Zhu Jie , Tse Elizabeth , Martin Lisa J. , Minkin Salomon , Boyd Norman F.
Published: April 2023

Selected characteristics of all studies included in the meta-analysis
Supplemental Tables from Investigation of Exomic Variants Associated with Overall Survival in Ovarian Cancer
Authors: Winham Stacey J. , Pirie Ailith , Chen Yian Ann , Larson Melissa C. , Fogarty Zachary C. , Earp Madalene A. , Anton-Culver Hoda , Bandera Elisa V. , Cramer Daniel , Doherty Jennifer A. , Goodman Marc T. , Gronwald Jacek , Karlan Beth Y. , Kjaer Susanne K. , Levine Douglas A. , Menon Usha , Ness Roberta B. , Pearce Celeste L. , Pejovic Tanja , Rossing Mary Anne , Wentzensen Nicolas , Bean Yukie T. , Bisogna Maria , Brinton Louise A. , Carney Michael E. , Cunningham Julie M. , Cybulski Cezary , deFazio Anna , Dicks Ed M. , Edwards Robert P. , Gayther Simon A. , Gentry-Maharaj Aleksandra , Gore Martin , Iversen Edwin S. , Jensen Allan , Johnatty Sharon E. , Lester Jenny , Lin Hui-Yi , Lissowska Jolanta , Lubinski Jan , Menkiszak Janusz , Modugno Francesmary , Moysich Kirsten B. , Orlow Irene , Pike Malcolm C. , Ramus Susan J. , Song Honglin , Terry Kathryn L. , Thompson Pamela J. , Tyrer Jonathan P. , van den Berg David J. , Vierkant Robert A. , Vitonis Allison F. , Walsh Christine , Wilkens Lynne R. , Wu Anna H. , Yang Hannah , Ziogas Argyrios , Berchuck Andrew , Schildkraut Joellen M. , Permuth-Wey Jennifer , Phelan Catherine M. , Pharoah Paul D.P. , Fridley Brooke L. , Sellers Thomas A. , Goode Ellen L.
Published: April 2023

Supplemental Table S1: Number of invasive EOC patients by study site. Supplemental Table S2: Results of Set 1 single variant analysis, for variants with P<5.0E-5. Analysis was adjusted for age, stage, grade, histology, site and PCs, and includes all variants genotyped in Set 1 (including variants non-overlapping with Set 2). Supplemental Table S3: Results of Set 1 gene-level analysis with P<1.0E-4 based on the burden test. Analysis was adjusted for age, stage, grade, histology, site and PCs. CMAF=combined (sum) minor allele frequency across all variants in the gene.
Supplementary Table S8 from Associations of Coffee Drinking with Systemic Immune and Inflammatory Markers
Authors: Loftfield Erikka , Shiels Meredith S. , Graubard Barry I. , Katki Hormuzd A. , Chaturvedi Anil K. , Trabert Britton , Pinto Ligia A. , Kemp Troy J. , Shebl Fatma M. , Mayne Susan T. , Wentzensen Nicolas , Purdue Mark P. , Hildesheim Allan , Sinha Rashmi , Freedman Neal D.
Published: April 2023

Supplementary Table S8. Odds ratios (OR) for high versus low levels e for the top five circulating inflammatory markers in three case-control studies nested within the PLCO Cancer Screening Trial by case-control study of origin
Figure S6B from Investigation of Exomic Variants Associated with Overall Survival in Ovarian Cancer
Authors: Winham Stacey J. , Pirie Ailith , Chen Yian Ann , Larson Melissa C. , Fogarty Zachary C. , Earp Madalene A. , Anton-Culver Hoda , Bandera Elisa V. , Cramer Daniel , Doherty Jennifer A. , Goodman Marc T. , Gronwald Jacek , Karlan Beth Y. , Kjaer Susanne K. , Levine Douglas A. , Menon Usha , Ness Roberta B. , Pearce Celeste L. , Pejovic Tanja , Rossing Mary Anne , Wentzensen Nicolas , Bean Yukie T. , Bisogna Maria , Brinton Louise A. , Carney Michael E. , Cunningham Julie M. , Cybulski Cezary , deFazio Anna , Dicks Ed M. , Edwards Robert P. , Gayther Simon A. , Gentry-Maharaj Aleksandra , Gore Martin , Iversen Edwin S. , Jensen Allan , Johnatty Sharon E. , Lester Jenny , Lin Hui-Yi , Lissowska Jolanta , Lubinski Jan , Menkiszak Janusz , Modugno Francesmary , Moysich Kirsten B. , Orlow Irene , Pike Malcolm C. , Ramus Susan J. , Song Honglin , Terry Kathryn L. , Thompson Pamela J. , Tyrer Jonathan P. , van den Berg David J. , Vierkant Robert A. , Vitonis Allison F. , Walsh Christine , Wilkens Lynne R. , Wu Anna H. , Yang Hannah , Ziogas Argyrios , Berchuck Andrew , Schildkraut Joellen M. , Permuth-Wey Jennifer , Phelan Catherine M. , Pharoah Paul D.P. , Fridley Brooke L. , Sellers Thomas A. , Goode Ellen L.
Published: April 2023

Supplemental Figure S 6B
Supplementary Table S4 from Associations of Coffee Drinking with Systemic Immune and Inflammatory Markers
Authors: Loftfield Erikka , Shiels Meredith S. , Graubard Barry I. , Katki Hormuzd A. , Chaturvedi Anil K. , Trabert Britton , Pinto Ligia A. , Kemp Troy J. , Shebl Fatma M. , Mayne Susan T. , Wentzensen Nicolas , Purdue Mark P. , Hildesheim Allan , Sinha Rashmi , Freedman Neal D.
Published: April 2023

Supplementary Table S4. Categorization of markers by weighted percent of values below the lower limit of detection (LOD)
Figure S4 from Investigation of Exomic Variants Associated with Overall Survival in Ovarian Cancer
Authors: Winham Stacey J. , Pirie Ailith , Chen Yian Ann , Larson Melissa C. , Fogarty Zachary C. , Earp Madalene A. , Anton-Culver Hoda , Bandera Elisa V. , Cramer Daniel , Doherty Jennifer A. , Goodman Marc T. , Gronwald Jacek , Karlan Beth Y. , Kjaer Susanne K. , Levine Douglas A. , Menon Usha , Ness Roberta B. , Pearce Celeste L. , Pejovic Tanja , Rossing Mary Anne , Wentzensen Nicolas , Bean Yukie T. , Bisogna Maria , Brinton Louise A. , Carney Michael E. , Cunningham Julie M. , Cybulski Cezary , deFazio Anna , Dicks Ed M. , Edwards Robert P. , Gayther Simon A. , Gentry-Maharaj Aleksandra , Gore Martin , Iversen Edwin S. , Jensen Allan , Johnatty Sharon E. , Lester Jenny , Lin Hui-Yi , Lissowska Jolanta , Lubinski Jan , Menkiszak Janusz , Modugno Francesmary , Moysich Kirsten B. , Orlow Irene , Pike Malcolm C. , Ramus Susan J. , Song Honglin , Terry Kathryn L. , Thompson Pamela J. , Tyrer Jonathan P. , van den Berg David J. , Vierkant Robert A. , Vitonis Allison F. , Walsh Christine , Wilkens Lynne R. , Wu Anna H. , Yang Hannah , Ziogas Argyrios , Berchuck Andrew , Schildkraut Joellen M. , Permuth-Wey Jennifer , Phelan Catherine M. , Pharoah Paul D.P. , Fridley Brooke L. , Sellers Thomas A. , Goode Ellen L.
Published: April 2023

Supplemental Figure S 4
Figure S2 from Investigation of Exomic Variants Associated with Overall Survival in Ovarian Cancer
Authors: Winham Stacey J. , Pirie Ailith , Chen Yian Ann , Larson Melissa C. , Fogarty Zachary C. , Earp Madalene A. , Anton-Culver Hoda , Bandera Elisa V. , Cramer Daniel , Doherty Jennifer A. , Goodman Marc T. , Gronwald Jacek , Karlan Beth Y. , Kjaer Susanne K. , Levine Douglas A. , Menon Usha , Ness Roberta B. , Pearce Celeste L. , Pejovic Tanja , Rossing Mary Anne , Wentzensen Nicolas , Bean Yukie T. , Bisogna Maria , Brinton Louise A. , Carney Michael E. , Cunningham Julie M. , Cybulski Cezary , deFazio Anna , Dicks Ed M. , Edwards Robert P. , Gayther Simon A. , Gentry-Maharaj Aleksandra , Gore Martin , Iversen Edwin S. , Jensen Allan , Johnatty Sharon E. , Lester Jenny , Lin Hui-Yi , Lissowska Jolanta , Lubinski Jan , Menkiszak Janusz , Modugno Francesmary , Moysich Kirsten B. , Orlow Irene , Pike Malcolm C. , Ramus Susan J. , Song Honglin , Terry Kathryn L. , Thompson Pamela J. , Tyrer Jonathan P. , van den Berg David J. , Vierkant Robert A. , Vitonis Allison F. , Walsh Christine , Wilkens Lynne R. , Wu Anna H. , Yang Hannah , Ziogas Argyrios , Berchuck Andrew , Schildkraut Joellen M. , Permuth-Wey Jennifer , Phelan Catherine M. , Pharoah Paul D.P. , Fridley Brooke L. , Sellers Thomas A. , Goode Ellen L.
Published: April 2023

Supplemental Figure S2
Figure S1 from Investigation of Exomic Variants Associated with Overall Survival in Ovarian Cancer
Authors: Winham Stacey J. , Pirie Ailith , Chen Yian Ann , Larson Melissa C. , Fogarty Zachary C. , Earp Madalene A. , Anton-Culver Hoda , Bandera Elisa V. , Cramer Daniel , Doherty Jennifer A. , Goodman Marc T. , Gronwald Jacek , Karlan Beth Y. , Kjaer Susanne K. , Levine Douglas A. , Menon Usha , Ness Roberta B. , Pearce Celeste L. , Pejovic Tanja , Rossing Mary Anne , Wentzensen Nicolas , Bean Yukie T. , Bisogna Maria , Brinton Louise A. , Carney Michael E. , Cunningham Julie M. , Cybulski Cezary , deFazio Anna , Dicks Ed M. , Edwards Robert P. , Gayther Simon A. , Gentry-Maharaj Aleksandra , Gore Martin , Iversen Edwin S. , Jensen Allan , Johnatty Sharon E. , Lester Jenny , Lin Hui-Yi , Lissowska Jolanta , Lubinski Jan , Menkiszak Janusz , Modugno Francesmary , Moysich Kirsten B. , Orlow Irene , Pike Malcolm C. , Ramus Susan J. , Song Honglin , Terry Kathryn L. , Thompson Pamela J. , Tyrer Jonathan P. , van den Berg David J. , Vierkant Robert A. , Vitonis Allison F. , Walsh Christine , Wilkens Lynne R. , Wu Anna H. , Yang Hannah , Ziogas Argyrios , Berchuck Andrew , Schildkraut Joellen M. , Permuth-Wey Jennifer , Phelan Catherine M. , Pharoah Paul D.P. , Fridley Brooke L. , Sellers Thomas A. , Goode Ellen L.
Published: April 2023

Supplemental Figure S1
Supplementary Table 3 from Circulating Long RNAs in Serum Extracellular Vesicles: Their Characterization and Potential Application as Biomarkers for Diagnosis of Colorectal Cancer
Authors: Dong Lei , Lin Wanrun , Qi Peng , Xu Mi-die , Wu Xiaoben , Ni Shujuan , Huang Dan , Weng Wei-wei , Tan Cong , Sheng Weiqi , Zhou Xiaoyan , Du Xiang
Published: April 2023

The list of lncRNA primers and the statistical results of exosomal RNA level comparison between 8 CRCs and 8 healthy subjects
Supplementary Figure 1 from Circulating Long RNAs in Serum Extracellular Vesicles: Their Characterization and Potential Application as Biomarkers for Diagnosis of Colorectal Cancer
Authors: Dong Lei , Lin Wanrun , Qi Peng , Xu Mi-die , Wu Xiaoben , Ni Shujuan , Huang Dan , Weng Wei-wei , Tan Cong , Sheng Weiqi , Zhou Xiaoyan , Du Xiang
Published: April 2023

Nine candidate reference genes were detected in (a) total serum RNA and (b) exosome RNA from colorectal cancer and healthy controls. geNorm analysis showed that L13 was the best reference gene in both serum RNA and exosome RNA.
Supplementary Table 1 from Serum Levels of Cytokines and Biomarkers for Inflammation and Immune Activation, and HIV-Associated Non-Hodgkin B-Cell Lymphoma Risk
Authors: Vendrame Elena , Hussain Shehnaz K. , Breen Elizabeth Crabb , Magpantay Larry I. , Widney Daniel P. , Jacobson Lisa P. , Variakojis Daina , Knowlton Emilee R. , Bream Jay H. , Ambinder Richard F. , Detels Roger , Martínez-Maza Otoniel
Published: April 2023

PDF - 123K, The risk of developing AIDS-NHL is elevated for those individuals who have higher levels of inflammatory biomarkers prior to AIDS-NHL diagnosis, excluding those who received cART.
Supplementary Table S1. CVs and ICCs of the pooled quality control sample for HBV assays from Hepatitis B Virus Infection and Risk of Nasopharyngeal Carcinoma in Southern China
Authors: Ye Yan-Fang , Xiang Yan-Qun , Fang Fang , Gao Rui , Zhang Li-Fang , Xie Shang-Hang , Liu Zhiwei , Du Jin-Lin , Chen Sui-Hong , Hong Ming-Huang , Qian Chao-Nan , Ye Weimin , Zeng Yi-Xin , Liu Qing , Cao Su-Mei
Published: April 2023

The intraclass correlation coefficients (ICCs) for the pooled QC samples of HBsAg, anti-HBs, HBeAg, anti-HBe, anti-HBc, were execellent (>0.9). The coefficients of variation (CVs) for the pooled QC samples of HBsAg, anti-HBs, HBeAg, anti-HBe, anti-HBc were all less than 20%.
Supplementary Methods from Physicians, Clinics, and Neighborhoods: Multiple Levels of Influence on Colorectal Cancer Screening
Authors: Pruitt Sandi L. , Leonard Tammy , Zhang Song , Schootman Mario , Halm Ethan A. , Gupta Samir
Published: April 2023

PDF file - 83K, Statistical details regarding specification of cross-classified logistic models.
Supplementary Table 1 from An Exploratory Study of Respiratory Quotient Calibration and Association with Postmenopausal Breast Cancer
Authors: Prentice Ross L. , Neuhouser Marian L. , Tinker Lesley F. , Pettinger Mary , Thomson Cynthia A. , Mossavar-Rahmani Yasmin , Thomas Fridtjof , Qi Lihong , Huang Ying
Published: April 2023

PDF file - 66K, Total Energy Calibration Equation Coefficients from Linear Regression of Log DLW Energy on Log Self-Reported Energy and Personal Characteristics, Using Data from 450 NPAAS Women.
Supplementary Table S2 from Interaction between Common Breast Cancer Susceptibility Variants, Genetic Ancestry, and Nongenetic Risk Factors in Hispanic Women
Authors: Fejerman Laura , Stern Mariana C. , John Esther M. , Torres-Mejía Gabriela , Hines Lisa M. , Wolff Roger K. , Baumgartner Kathy B. , Giuliano Anna R. , Ziv Elad , Pérez-Stable Eliseo J. , Slattery Martha L.
Published: April 2023

Association between ten GWAS-identified SNPs and breast cancer risk, stratified by environmental risk factors, in Hispanic women from the Breast Cancer Health Disparities Study
Supplementary Table S1 from Secondhand Tobacco Smoke Exposure and Lung Adenocarcinoma In Situ/Minimally Invasive Adenocarcinoma (AIS/MIA)
Authors: Kim Claire H. , Lee Yuan-Chin Amy , Hung Rayjean J. , Boffetta Paolo , Xie Dong , Wampfler Jason A. , Cote Michele L. , Chang Shen-Chih , Ugolini Donatella , Neri Monica , Le Marchand Loic , Schwartz Ann G. , Morgenstern Hal , Christiani David C. , Yang Ping , Zhang Zuo-Feng
Published: April 2023

Associations between specific aspects of secondhand tobacco smoke exposure and lung adenocarcinoma in situ/minimally invasive adenocarcinoma
Supplementary Table S5 from Differential Serum Cytokine Levels and Risk of Lung Cancer Between African and European Americans
Authors: Pine Sharon R. , Mechanic Leah E. , Enewold Lindsey , Bowman Elise D. , Ryan Bríd M. , Cote Michele L. , Wenzlaff Angela S. , Loffredo Christopher A. , Olivo-Marston Susan , Chaturvedi Anil , Caporaso Neil E. , Schwartz Ann G. , Harris Curtis C.
Published: April 2023

Supplementary Table S5. Association between serum cytokine levels and lung cancer in WSU and PLCO studies, after adjusting for potential confounding
Supplementary Tables 1 and 2 and Supplementary Figure Legends from Maternal Smoking and DNA Methylation in Newborns: In Utero Effect or Epigenetic Inheritance?
Authors: Joubert Bonnie R. , Håberg Siri E. , Bell Douglas A. , Nilsen Roy M. , Vollset Stein Emil , Midttun Øivind , Ueland Per Magne , Wu Michael C. , Nystad Wenche , Peddada Shyamal D. , London Stephanie J.
Published: April 2023

PDF - 89K, Supplementary Table 1. Differential methylation in cord blood DNA in relation to the father's smoking prior to the mother's pregnancy. Supplementary Table 2. The combined effect of mother and grandmother smoking in pregnancy compared to only the mother smoking in pregnancy, on differential DNA methylation in cord blood. Legends for Supplementary Figures 1 through 4.
Supplementary Figure 3 from Maternal Smoking and DNA Methylation in Newborns: In Utero Effect or Epigenetic Inheritance?
Authors: Joubert Bonnie R. , Håberg Siri E. , Bell Douglas A. , Nilsen Roy M. , Vollset Stein Emil , Midttun Øivind , Ueland Per Magne , Wu Michael C. , Nystad Wenche , Peddada Shyamal D. , London Stephanie J.
Published: April 2023

PDF - 16K, Association between the combined mother and grandmother smoking categories and DNA methylation at 26 CpGs of interest. Each point represents the association for each CpG in each smoking category. *Significance threshold p<0.0019 (below the line is not statistically significant).
Supplementary Table 2 from Physical Activity in Relation to Risk of Hematologic Cancers: A Systematic Review and Meta-analysis
Authors: Jochem Carmen , Leitzmann Michael F. , Keimling Marlen , Schmid Daniela , Behrens Gundula
Published: April 2023

PDF file - 70KB, Physical activity and total hematologic cancer - summary risk estimates from random-effects models including 75 risk estimates, stratified by selected study characteristics.
Supplementary Figure 2 from Physical Activity in Relation to Risk of Hematologic Cancers: A Systematic Review and Meta-analysis
Authors: Jochem Carmen , Leitzmann Michael F. , Keimling Marlen , Schmid Daniela , Behrens Gundula
Published: April 2023

PDF file - 47KB, Funnel plot for the main random-effects meta-analysis including 84 risk estimates.
Supplemental Table S8 from Impact of Pre-analytic Blood Sample Collection Factors on Metabolomics
Authors: Townsend Mary K. , Bao Ying , Poole Elizabeth M. , Bertrand Kimberly A. , Kraft Peter , Wolpin Brian M. , Clish Clary B. , Tworoger Shelley S.
Published: April 2023

Metabolite LC-MS geometric mean peak areas by time of day of blood draw and fasting time
Supplementary Table S1 from A Composite Cytology–Histology Endpoint Allows a More Accurate Estimate of Anal High-Grade Squamous Intraepithelial Lesion Prevalence
Authors: Machalek Dorothy A. , Poynten I. Mary , Jin Fengyi , Hillman Richard J. , Templeton David J. , Law Carmella , Roberts Jennifer M. , Tabrizi Sepehr N. , Garland Suzanne M. , Farnsworth Annabelle , Fairley Christopher K. , Grulich Andrew E.
Published: April 2023

Association of HPV16, other HR-HPV types and LR-HPV only with increasing grade of composite endpoint, stratified by HIV status
Supplemental Table S4 from Impact of Pre-analytic Blood Sample Collection Factors on Metabolomics
Authors: Townsend Mary K. , Bao Ying , Poole Elizabeth M. , Bertrand Kimberly A. , Kraft Peter , Wolpin Brian M. , Clish Clary B. , Tworoger Shelley S.
Published: April 2023

Individual metabolite LC-MS geometric mean peak areas by season of blood draw
Supplemental Table S2 from Impact of Pre-analytic Blood Sample Collection Factors on Metabolomics
Authors: Townsend Mary K. , Bao Ying , Poole Elizabeth M. , Bertrand Kimberly A. , Kraft Peter , Wolpin Brian M. , Clish Clary B. , Tworoger Shelley S.
Published: April 2023

Distribution of Spearman partial correlation coefficients among metabolites in each metabolite category
Supplementary Table 6 from Genetic Variants in Immune-Related Pathways and Breast Cancer Risk in African American Women in the AMBER Consortium
Authors: Hong Chi-Chen , Sucheston-Campbell Lara E. , Liu Song , Hu Qiang , Yao Song , Lunetta Kathryn L. , Haddad Stephen A. , Ruiz-Narváez Edward A. , Bensen Jeannette T. , Cheng Ting-Yuan David , Bandera Elisa V. , Rosenberg Lynn A. , Haiman Christopher A. , Lee Kelvin , Evans Sharon S. , Abrams Scott I. , Repasky Elizabeth A. , Olshan Andrew F. , Palmer Julie R. , Ambrosone Christine B.
Published: April 2023

Immune-related genes found to be associated with breast cancer in AMBER
Supplementary Table 2 from Identification of Breast Cancer DNA Methylation Markers Optimized for Fine-Needle Aspiration Samples
Authors: Bu Dawei , Lewis Cheryl M. , Sarode Venetia , Chen Min , Ma Xiaotu , Lazorwitz Aaron M. , Rao Roshni , Leitch Marilyn , Moldrem Amy , Andrews Valerie , Gazdar Adi , Euhus David
Published: April 2023

Supplementary Table 2 from Identification of Breast Cancer DNA Methylation Markers Optimized for Fine-Needle Aspiration Samples
Supplementary Table 1 from De Novo Post-Diagnosis Aspirin Use and Mortality in Women with Stage I–III Breast Cancer
Authors: Barron Thomas I. , Murphy Laura M. , Brown Chris , Bennett Kathleen , Visvanathan Kala , Sharp Linda
Published: April 2023

Study covariate and outcome definitions.
Supplementary Tables 1-3 from Improved Performance of Serum Alpha-Fetoprotein for Hepatocellular Carcinoma Diagnosis in HCV Cirrhosis with Normal Alanine Transaminase
Authors: Yang Ju Dong , Dai Jianliang , Singal Amit G. , Gopal Purva , Addissie Benyam D. , Nguyen Mindie H. , Befeler Alex S. , Reddy K. Rajender , Schwartz Myron , Harnois Denise M. , Yamada Hiroyuki , Gores Gregory J. , Feng Ziding , Marrero Jorge A. , Roberts Lewis R.
Published: April 2023

Supplementary Table 1. Sensitivity and Specificity with Fixed Specificity of 90% or Fixed Sensitivity of 70% Supplementary Table 2. Cross-validation of the AUCs of AFP for HCC detection Supplementary Table 3. Clinical Characteristics of Validation cohort
Supplementary Tables S1-S4 from Metformin Use and Risk of Colorectal Adenoma after Polypectomy in Patients with Type 2 Diabetes Mellitus
Authors: Marks Amy R. , Pietrofesa Ralph A. , Jensen Christopher D. , Zebrowski Alexis , Corley Douglas A. , Doubeni Chyke A.
Published: April 2023

Table S1: Associations between metformin use and risk of colorectal adenoma recurrence in patients with type 2 diabetes.Table S2: Sensitivity analyses with restrictions on pre-index diabetes medication use, accrued persontime prior to the diabetes diagnosis date, and non-metformin pre-index diabetes medication use, and inclusion of mean HbA1c during follow-up. Table S3: Sensitivity analysis limiting follow-up to 3 to <6 years and 6 to 10 years from the index exam. Table S4: Associations between metformin use and risk of colorectal adenoma recurrence in patients with type 2 diabetes stratified by sex
Supplementary Table S1 from Prediagnostic Calcium Intake and Lung Cancer Survival: A Pooled Analysis of 12 Cohort Studies
Authors: Yu Danxia , Takata Yumie , Smith-Warner Stephanie A. , Blot William , Sawada Norie , White Emily , Freedman Neal , Robien Kim , Giovannucci Edward , Zhang Xuehong , Park Yikyung , Gao Yu-Tang , Chlebowski Rowan T. , Langhammer Arnulf , Yang Gong , Severi Gianluca , Manjer Jonas , Khaw Kay-Tee , Weiderpass Elisabete , Liao Linda M. , Caporaso Neil , Krokstad Steinar , Hveem Kristian , Sinha Rashmi , Ziegler Regina , Tsugane Shoichiro , Xiang Yong-Bing , Johansson Mattias , Zheng Wei , Shu Xiao-Ou
Published: April 2023

Characteristics of the participating cohorts
Supplementary Figure 1 from Pleiotropy between Genetic Markers of Obesity and Risk of Prostate Cancer
Authors: Edwards Todd L. , Giri Ayush , Motley Saundra , Duong Wynne , Fowke Jay H.
Published: April 2023

PDF file - 770K, Principal Components Plot for Cases and Controls from the Nashville Men's Health Study and 11 HAPMAP Reference Populations.
Supplemental Table 2 from Vasectomy and Risk of Prostate Cancer in a Screening Trial
Authors: Shoag Jonathan , Savenkov Oleksander , Christos Paul J. , Mittal Sameer , Halpern Joshua A. , Askin Gulce , Shoag Daniel , Golan Ron , Lee Daniel J. , O'Malley Padraic , Najari Bobby , Eisner Brian , Hu Jim C. , Scherr Douglas , Schlegel Peter , Barbieri Christopher E.
Published: April 2023

Supplemental Table 2. Risk of prostate cancer by vasectomy status and trial arm using multiple imputation.
Supplementary Figure Legend from Summer Peaks in Uptake of Human Papillomavirus and Other Adolescent Vaccines in the United States
Authors: Moss Jennifer L. , Reiter Paul L. , Rimer Barbara K. , Ribisl Kurt M. , Brewer Noel T.
Published: April 2023

Supplementary Figure Legend
Supplemental Tables 1 and 2 from Human Papillomavirus Genotype-Specific Prevalence across the Continuum of Cervical Neoplasia and Cancer
Authors: Joste Nancy E. , Ronnett Brigitte M. , Hunt William C. , Pearse Amanda , Langsfeld Erika , Leete Thomas , Jaramillo MaryAnn , Stoler Mark H. , Castle Philip E. , Wheeler Cosette M.
Published: April 2023

Supplemental Tables 1 and 2. Supplemental Table 1 Population and Sample Sizes Supplemental Table 2 HPV prevalence in cervical biopsies that are positive for a single HPV type, stratified by community diagnosis
Supplementary Table 4 from Integrated Analysis of Multiple Gene Expression Profiling Datasets Revealed Novel Gene Signatures and Molecular Markers in Nasopharyngeal Carcinoma
Authors: Huang Chen , Tang Hailin , Zhang Wenling , She Xiaoling , Liao Qianjin , Li Xiaoling , Wu Minghua , Li Guiyuan
Published: April 2023

PDF file - 66K
Supplementary Figure 2C from Integrated Analysis of Multiple Gene Expression Profiling Datasets Revealed Novel Gene Signatures and Molecular Markers in Nasopharyngeal Carcinoma
Authors: Huang Chen , Tang Hailin , Zhang Wenling , She Xiaoling , Liao Qianjin , Li Xiaoling , Wu Minghua , Li Guiyuan
Published: April 2023

PDF file - 1.5MB
Supplemental Figure 2 from Collecting Fecal Samples for Microbiome Analyses in Epidemiology Studies
Authors: Sinha Rashmi , Chen Jun , Amir Amnon , Vogtmann Emily , Shi Jianxin , Inman Kristin S. , Flores Roberto , Sampson Joshua , Knight Rob , Chia Nicholas
Published: April 2023

Supplementary Figure 2: Evaluation of accuracy. Intraclass correlation coefficients (all samples at time zero compared to sample with no additive) for microbiome metrics including the abundance of three phyla, two alpha-diversity metrics (number of observed operational taxonomic units and Shannon index) and four beta-diversity metrics (top PCoA component for unweighted Unifrac, generalized Unifrac, weighted UniFrac, and Bray-Curtis distance) in the Knight laboratory (A) and the Mayo Microbiome laboratory (B).
Table S4. Top pathways and pathway-smoking interactions that are associated with lung squamous cell carcinoma. from A Novel Pathway-Based Approach Improves Lung Cancer Risk Prediction Using Germline Genetic Variations
Authors: Qian David C. , Han Younghun , Byun Jinyoung , Shin Hae Ri , Hung Rayjean J. , McLaughlin John R. , Landi Maria Teresa , Seminara Daniela , Amos Christopher I.
Published: April 2023

For individuals in the EAGLE study, all consisting of Italians, a pathway-level susceptibility effect was computed for each pathway in MSigDB as the sum of relevant SNP variant alleles weighted by their log odds ratios from the TRICL lung squamous cell carcinoma GWAS meta-analysis. Pathway values were also multiplied by cumulative smoking pack-years to produce pathway-smoking interactions. The pathways and pathway-smoking interactions that differ most between lung squamous cell carcinoma cases and healthy controls (t-test P < 0.05) in the EAGLE study are presented. Pearson correlation coefficients between these pathways and pathway-smoking interactions, and each of age, sex, and smoking pack-years are presented as well.
Table S3. Top pathways and pathway-smoking interactions that are associated with lung adenocarcinoma. from A Novel Pathway-Based Approach Improves Lung Cancer Risk Prediction Using Germline Genetic Variations
Authors: Qian David C. , Han Younghun , Byun Jinyoung , Shin Hae Ri , Hung Rayjean J. , McLaughlin John R. , Landi Maria Teresa , Seminara Daniela , Amos Christopher I.
Published: April 2023

For individuals in the EAGLE study, all consisting of Italians, a pathway-level susceptibility effect was computed for each pathway in MSigDB as the sum of relevant SNP variant alleles weighted by their log odds ratios from the TRICL lung adenocarcinoma GWAS meta-analysis. Pathway values were also multiplied by cumulative smoking pack-years to produce pathway-smoking interactions. The pathways and pathway-smoking interactions that differ most between lung adenocarcinoma cases and healthy controls (t-test P < 0.05) in the EAGLE study are presented. Pearson correlation coefficients between these pathways and pathway-smoking interactions, and each of age, sex, and smoking pack-years are presented as well.
Table S2. Top pathways and pathway-smoking interactions that are associated with overall lung cancer. from A Novel Pathway-Based Approach Improves Lung Cancer Risk Prediction Using Germline Genetic Variations
Authors: Qian David C. , Han Younghun , Byun Jinyoung , Shin Hae Ri , Hung Rayjean J. , McLaughlin John R. , Landi Maria Teresa , Seminara Daniela , Amos Christopher I.
Published: April 2023

For individuals in the EAGLE study, all consisting of Italians, a pathway-level susceptibility effect was computed for each pathway in MSigDB as the sum of relevant SNP variant alleles weighted by their log odds ratios from the TRICL overall lung cancer GWAS meta-analysis. Pathway values were also multiplied by cumulative smoking pack-years to produce pathway-smoking interactions. The pathways and pathway-smoking interactions that differ most between lung cancer cases and healthy controls (t-test P < 0.05) in the EAGLE study are presented. Pearson correlation coefficients between these pathways and pathway-smoking interactions, and each of age, sex, and smoking pack-years are presented as well.
Supplementary Table 1 from Hormone Therapy, Estrogen Metabolism, and Risk of Breast Cancer in the Women's Health Initiative Hormone Therapy Trial
Authors: Mackey Rachel H. , Fanelli Theresa J. , Modugno Francesmary , Cauley Jane A. , McTigue Kathleen M. , Brooks Maria Mori , Chlebowski Rowan T. , Manson JoAnn E. , Klug Thomas L. , Kip Kevin E. , Curb J. David , Kuller Lewis H.
Published: April 2023

PDF file - 64K, Breast cancer risk OR(95% CI) for 1 year change in estrogen metabolites (EM) among women randomized to active treatment in the WHI Hormone Trials, with cases stratified by median follow-up time
Supplementary Table S1 from A Decade of GWAS Results in Lung Cancer
Authors: Bossé Yohan , Amos Christopher I.
Published: April 2023

Table S1 shows genetic loci associated with lung cancer survival identified by GWAS
Supplementary Materials 2 from Establishment of the Cancer Prevention Study II Nutrition Cohort Colorectal Tissue Repository
Authors: Campbell Peter T. , Deka Anusila , Briggs Peter , Cicek Mine , Farris Alton B. , Gaudet Mia M. , Jacobs Eric J. , Newton Christina C. , Patel Alpa V. , Teras Lauren R. , Thibodeau Stephen N. , Tillmans Lori , Gapstur Susan M.
Published: April 2023

Documents sent to hospitals to collect tumor samples for the Cancer Prevention Study-II Nutrition Cohort Colorectal Tissue Repository.