bluuebunny/crossref_metadata_2025 huggingface dataset:
Tables S1-S3 from BLIMP1 Induces Transient Metastatic Heterogeneity in Pancreatic Cancer
Authors: Chiou Shin-Heng , Risca Viviana I. , Wang Gordon X. , Yang Dian , Grüner Barbara M. , Kathiria Arwa S. , Ma Rosanna K. , Vaka Dedeepya , Chu Pauline , Kozak Margaret , Castellini Laura , Graves Edward E. , Kim Grace E. , Mourrain Philippe , Koong Albert C. , Giaccia Amato J. , Winslow Monte M.
Published: April 2023

Supplementary Table S1, Gene sets that are enriched in Hmga2/GFP-positive and -negative PDAC cells; Supplementary Table S2, A stringent list of Blimp1-dependent genes that are either induced or repressed under hypoxia; Supplementary Table S3, GO terms enriched in hypoxia-induced, Blimp1-dependent genes by FuncAssociate 3.0.
Supplementary Figure 3 from Response to MET Inhibitors in Patients with Stage IV Lung Adenocarcinomas Harboring MET Mutations Causing Exon 14 Skipping
Authors: Paik Paul K. , Drilon Alexander , Fan Pang-Dian , Yu Helena , Rekhtman Natasha , Ginsberg Michelle S. , Borsu Laetitia , Schultz Nikolaus , Berger Michael F. , Rudin Charles M. , Ladanyi Marc
Published: April 2023

Representative photomicrographs from 3 patient samples demonstrating tumor localization on the left (H&E staining) and MET protein expression by IHC on the right. High membranous MET protein expression by IHC is present in all samples (H-score = 300).
Supplementary Table S2 from Acquired METD1228V Mutation and Resistance to MET Inhibition in Lung Cancer
Authors: Bahcall Magda , Sim Taebo , Paweletz Cloud P. , Patel Jyoti D. , Alden Ryan S. , Kuang Yanan , Sacher Adrian G. , Kim Nam Doo , Lydon Christine A. , Awad Mark M. , Jaklitsch Michael T. , Sholl Lynette M. , Jänne Pasi A. , Oxnard Geoffrey R.
Published: April 2023

Supplementary Table S2 shows type I and II MET kinase inhibitors and key trials studying their activity lung cancer populations enriched for MET-dependence.
Supplementary Figure Legends from Acquired METD1228V Mutation and Resistance to MET Inhibition in Lung Cancer
Authors: Bahcall Magda , Sim Taebo , Paweletz Cloud P. , Patel Jyoti D. , Alden Ryan S. , Kuang Yanan , Sacher Adrian G. , Kim Nam Doo , Lydon Christine A. , Awad Mark M. , Jaklitsch Michael T. , Sholl Lynette M. , Jänne Pasi A. , Oxnard Geoffrey R.
Published: April 2023

Supplementary Figure Legends.
Supplementary Data from MACROD2 Haploinsufficiency Impairs Catalytic Activity of PARP1 and Promotes Chromosome Instability and Growth of Intestinal Tumors
Authors: Sakthianandeswaren Anuratha , Parsons Marie J. , Mouradov Dmitri , MacKinnon Ruth N. , Catimel Bruno , Liu Sheng , Palmieri Michelle , Love Christopher , Jorissen Robert N. , Li Shan , Whitehead Lachlan , Putoczki Tracy L. , Preaudet Adele , Tsui Cary , Nowell Cameron J. , Ward Robyn L. , Hawkins Nicholas J. , Desai Jayesh , Gibbs Peter , Ernst Matthias , Street Ian , Buchert Michael , Sieber Oliver M.
Published: April 2023

Mouse phenotyping data
Supplementary Figures S1-S3 from Targeted Therapies for Targeted Populations: Anti-EGFR Treatment for EGFR-Amplified Gastroesophageal Adenocarcinoma
Authors: Maron Steven B. , Alpert Lindsay , Kwak Heewon A. , Lomnicki Samantha , Chase Leah , Xu David , O'Day Emily , Nagy Rebecca J. , Lanman Richard B. , Cecchi Fabiola , Hembrough Todd , Schrock Alexa , Hart John , Xiao Shu-Yuan , Setia Namrata , Catenacci Daniel V.T.
Published: April 2023

Three Supplementary Figures
Supplementary Tables from Sequential ALK Inhibitors Can Select for Lorlatinib-Resistant Compound ALK Mutations in ALK-Positive Lung Cancer
Authors: Yoda Satoshi , Lin Jessica J. , Lawrence Michael S. , Burke Benjamin J. , Friboulet Luc , Langenbucher Adam , Dardaei Leila , Prutisto-Chang Kylie , Dagogo-Jack Ibiayi , Timofeevski Sergei , Hubbeling Harper , Gainor Justin F. , Ferris Lorin A. , Riley Amanda K. , Kattermann Krystina E. , Timonina Daria , Heist Rebecca S. , Iafrate A. John , Benes Cyril H. , Lennerz Jochen K. , Mino-Kenudson Mari , Engelman Jeffrey A. , Johnson Ted W. , Hata Aaron N. , Shaw Alice T.
Published: April 2023

suppl tables
Table S2 from Impaired HLA Class I Antigen Processing and Presentation as a Mechanism of Acquired Resistance to Immune Checkpoint Inhibitors in Lung Cancer
Authors: Gettinger Scott , Choi Jungmin , Hastings Katherine , Truini Anna , Datar Ila , Sowell Ryan , Wurtz Anna , Dong Weilai , Cai Guoping , Melnick Mary Ann , Du Victor Y. , Schlessinger Joseph , Goldberg Sarah B. , Chiang Anne , Sanmamed Miguel F. , Melero Ignacio , Agorreta Jackeline , Montuenga Luis M. , Lifton Richard , Ferrone Soldano , Kavathas Paula , Rimm David L. , Kaech Susan M. , Schalper Kurt , Herbst Roy S. , Politi Katerina
Published: April 2023

APM mutation and copy number alterations
Supplementary Table 4 from Patient-Driven Discovery, Therapeutic Targeting, and Post-Clinical Validation of a Novel AKT1 Fusion–Driven Cancer
Authors: Slotkin Emily K. , Diolaiti Daniel , Shukla Neerav N. , Dela Cruz Filemon S. , Clark Jennifer J. , Gundem Gunes , Yellapantula Venkata D. , Levine Max F. , You Daoqi , Ma Peilin , Pachhal Sagarika , Ibanez Sanchez Glorymar , Benayed Ryma , Jungbluth Achim A. , Smyth Lillian M. , Mauguen Audrey , Gushterova Irena , Ding Hongxu , Spraggon Lee , Darnell Robert , Califano Andrea , Ladanyi Marc , Papaemmanuil Elli , Kung Andrew L. , Hyman David M. , Roberts Stephen S.
Published: April 2023

Supplementary Table 4
Supplementary Methods from Patient-Driven Discovery, Therapeutic Targeting, and Post-Clinical Validation of a Novel AKT1 Fusion–Driven Cancer
Authors: Slotkin Emily K. , Diolaiti Daniel , Shukla Neerav N. , Dela Cruz Filemon S. , Clark Jennifer J. , Gundem Gunes , Yellapantula Venkata D. , Levine Max F. , You Daoqi , Ma Peilin , Pachhal Sagarika , Ibanez Sanchez Glorymar , Benayed Ryma , Jungbluth Achim A. , Smyth Lillian M. , Mauguen Audrey , Gushterova Irena , Ding Hongxu , Spraggon Lee , Darnell Robert , Califano Andrea , Ladanyi Marc , Papaemmanuil Elli , Kung Andrew L. , Hyman David M. , Roberts Stephen S.
Published: April 2023

Supplementary Methods
Supplementary Data from Naïve T-cell Deficits at Diagnosis and after Chemotherapy Impair Cell Therapy Potential in Pediatric Cancers
Authors: Das Rajat K. , Vernau Lauren , Grupp Stephan A. , Barrett David M.
Published: April 2023

All supplementary data
Supplementary Table S6-7 from Molecular and Genetic Characterization of MHC Deficiency Identifies EZH2 as Therapeutic Target for Enhancing Immune Recognition
Authors: Ennishi Daisuke , Takata Katsuyoshi , Béguelin Wendy , Duns Gerben , Mottok Anja , Farinha Pedro , Bashashati Ali , Saberi Saeed , Boyle Merrill , Meissner Barbara , Ben-Neriah Susana , Woolcock Bruce W. , Telenius Adèle , Lai Daniel , Teater Matt , Kridel Robert , Savage Kerry J. , Sehn Laurie H. , Morin Ryan D. , Marra Marco A. , Shah Sohrab P. , Connors Joseph M. , Gascoyne Randy D. , Scott David W. , Melnick Ari M. , Steidl Christian
Published: April 2023

Gene expression analyses of clinical samples
Supplementary Table S4-5 from Molecular and Genetic Characterization of MHC Deficiency Identifies EZH2 as Therapeutic Target for Enhancing Immune Recognition
Authors: Ennishi Daisuke , Takata Katsuyoshi , Béguelin Wendy , Duns Gerben , Mottok Anja , Farinha Pedro , Bashashati Ali , Saberi Saeed , Boyle Merrill , Meissner Barbara , Ben-Neriah Susana , Woolcock Bruce W. , Telenius Adèle , Lai Daniel , Teater Matt , Kridel Robert , Savage Kerry J. , Sehn Laurie H. , Morin Ryan D. , Marra Marco A. , Shah Sohrab P. , Connors Joseph M. , Gascoyne Randy D. , Scott David W. , Melnick Ari M. , Steidl Christian
Published: April 2023

Genetic backgrounds of MHC deficient cases
Supplementary Table S1-3 from Molecular and Genetic Characterization of MHC Deficiency Identifies EZH2 as Therapeutic Target for Enhancing Immune Recognition
Authors: Ennishi Daisuke , Takata Katsuyoshi , Béguelin Wendy , Duns Gerben , Mottok Anja , Farinha Pedro , Bashashati Ali , Saberi Saeed , Boyle Merrill , Meissner Barbara , Ben-Neriah Susana , Woolcock Bruce W. , Telenius Adèle , Lai Daniel , Teater Matt , Kridel Robert , Savage Kerry J. , Sehn Laurie H. , Morin Ryan D. , Marra Marco A. , Shah Sohrab P. , Connors Joseph M. , Gascoyne Randy D. , Scott David W. , Melnick Ari M. , Steidl Christian
Published: April 2023

MHC expression status in the cohort
Supplementary Methods and Figures from Molecular and Genetic Characterization of MHC Deficiency Identifies EZH2 as Therapeutic Target for Enhancing Immune Recognition
Authors: Ennishi Daisuke , Takata Katsuyoshi , Béguelin Wendy , Duns Gerben , Mottok Anja , Farinha Pedro , Bashashati Ali , Saberi Saeed , Boyle Merrill , Meissner Barbara , Ben-Neriah Susana , Woolcock Bruce W. , Telenius Adèle , Lai Daniel , Teater Matt , Kridel Robert , Savage Kerry J. , Sehn Laurie H. , Morin Ryan D. , Marra Marco A. , Shah Sohrab P. , Connors Joseph M. , Gascoyne Randy D. , Scott David W. , Melnick Ari M. , Steidl Christian
Published: April 2023

Supplementary Methods, Figures and Legends
Table S2 from Galectin-3, a Druggable Vulnerability for KRAS-Addicted Cancers
Authors: Seguin Laetitia , Camargo Maria F. , Wettersten Hiromi I. , Kato Shumei , Desgrosellier Jay S. , von Schalscha Tami , Elliott Kathryn C. , Cosset Erika , Lesperance Jacqueline , Weis Sara M. , Cheresh David A.
Published: April 2023

Characteristics of PDX models
Supplementary Figures from Response to ERBB3-Directed Targeted Therapy in NRG1-Rearranged Cancers
Authors: Drilon Alexander , Somwar Romel , Mangatt Biju P. , Edgren Henrik , Desmeules Patrice , Ruusulehto Anja , Smith Roger S. , Delasos Lukas , Vojnic Morana , Plodkowski Andrew J. , Sabari Joshua , Ng Kenneth , Montecalvo Joseph , Chang Jason , Tai Huichun , Lockwood William W. , Martinez Victor , Riely Gregory J. , Rudin Charles M. , Kris Mark G. , Arcila Maria E. , Matheny Christopher , Benayed Ryma , Rekhtman Natasha , Ladanyi Marc , Ganji Gopinath
Published: April 2023

Figures S1, S2, S3, S4, and S5
Table S4 from Deletion 6q Drives T-cell Leukemia Progression by Ribosome Modulation
Authors: Gachet Stéphanie , El-Chaar Tiama , Avran David , Genesca Eulalia , Catez Frédéric , Quentin Samuel , Delord Marc , Thérizols Gabriel , Briot Delphine , Meunier Godelieve , Hernandez Lucie , Pla Marika , Smits Willem K. , Buijs-Gladdines Jessica G. , Van Loocke Wouter , Menschaert Gerben , André-Schmutz Isabelle , Taghon Tom , Van Vlierberghe Pieter , Meijerink Jules P. , Baruchel André , Dombret Hervé , Clappier Emmanuelle , Diaz Jean-Jacques , Gazin Claude , de Thé Hugues , Sigaux François , Soulier Jean
Published: April 2023

Differentially translated transcripts - translatome
Supplementary Data from Deletion 6q Drives T-cell Leukemia Progression by Ribosome Modulation
Authors: Gachet Stéphanie , El-Chaar Tiama , Avran David , Genesca Eulalia , Catez Frédéric , Quentin Samuel , Delord Marc , Thérizols Gabriel , Briot Delphine , Meunier Godelieve , Hernandez Lucie , Pla Marika , Smits Willem K. , Buijs-Gladdines Jessica G. , Van Loocke Wouter , Menschaert Gerben , André-Schmutz Isabelle , Taghon Tom , Van Vlierberghe Pieter , Meijerink Jules P. , Baruchel André , Dombret Hervé , Clappier Emmanuelle , Diaz Jean-Jacques , Gazin Claude , de Thé Hugues , Sigaux François , Soulier Jean
Published: April 2023

Supp Fig. S1-6, Supp Tables S1-S3, Supp Methods and References
Supplementary Table S4 from An In Vivo Kras Allelic Series Reveals Distinct Phenotypes of Common Oncogenic Variants
Authors: Zafra Maria Paz , Parsons Marie J. , Kim Jangkyung , Alonso-Curbelo Direna , Goswami Sukanya , Schatoff Emma M. , Han Teng , Katti Alyna , Fernandez Maria Teresa Calvo , Wilkinson John E. , Piskounova Elena , Dow Lukas E.
Published: April 2023

Differential gene expression analysis of RNAseq from 4-week-old pancreas
CD-20-0142R1_Supplementary_Figures_S1-S5.docx from BI-3406, a Potent and Selective SOS1–KRAS Interaction Inhibitor, Is Effective in KRAS-Driven Cancers through Combined MEK Inhibition
Authors: Hofmann Marco H. , Gmachl Michael , Ramharter Juergen , Savarese Fabio , Gerlach Daniel , Marszalek Joseph R. , Sanderson Michael P. , Kessler Dirk , Trapani Francesca , Arnhof Heribert , Rumpel Klaus , Botesteanu Dana-Adriana , Ettmayer Peter , Gerstberger Thomas , Kofink Christiane , Wunberg Tobias , Zoephel Andreas , Fu Szu-Chin , Teh Jessica L. , Böttcher Jark , Pototschnig Nikolai , Schachinger Franziska , Schipany Katharina , Lieb Simone , Vellano Christopher P. , O'Connell Jonathan C. , Mendes Rachel L. , Moll Jurgen , Petronczki Mark , Heffernan Timothy P. , Pearson Mark , McConnell Darryl B. , Kraut Norbert
Published: April 2023

Supplementary Figures S1-S5
Supplementary Table S1 from An In Vivo Kras Allelic Series Reveals Distinct Phenotypes of Common Oncogenic Variants
Authors: Zafra Maria Paz , Parsons Marie J. , Kim Jangkyung , Alonso-Curbelo Direna , Goswami Sukanya , Schatoff Emma M. , Han Teng , Katti Alyna , Fernandez Maria Teresa Calvo , Wilkinson John E. , Piskounova Elena , Dow Lukas E.
Published: April 2023

ESC clone HDR efficiency
Supplementary Data from Single-Cell Analysis Reveals Fibroblast Clusters Linked to Immunotherapy Resistance in Cancer
Authors: Kieffer Yann , Hocine Hocine R. , Gentric Géraldine , Pelon Floriane , Bernard Charles , Bourachot Brigitte , Lameiras Sonia , Albergante Luca , Bonneau Claire , Guyard Alice , Tarte Karin , Zinovyev Andrei , Baulande Sylvain , Zalcman Gerard , Vincent-Salomon Anne , Mechta-Grigoriou Fatima
Published: April 2023

Supplementary Information
Supplemental Figure 5 from The Genomic Landscape of Intrinsic and Acquired Resistance to Cyclin-Dependent Kinase 4/6 Inhibitors in Patients with Hormone Receptor–Positive Metastatic Breast Cancer
Authors: Wander Seth A. , Cohen Ofir , Gong Xueqian , Johnson Gabriela N. , Buendia-Buendia Jorge E. , Lloyd Maxwell R. , Kim Dewey , Luo Flora , Mao Pingping , Helvie Karla , Kowalski Kailey J. , Nayar Utthara , Waks Adrienne G. , Parsons Stephen H. , Martinez Ricardo , Litchfield Lacey M. , Ye Xiang S. , Yu Chunping , Jansen Valerie M. , Stille John R. , Smith Patricia S. , Oakley Gerard J. , Chu Quincy S. , Batist Gerald , Hughes Melissa E. , Kremer Jill D. , Garraway Levi A. , Winer Eric P. , Tolaney Sara M. , Lin Nancy U. , Buchanan Sean G. , Wagle Nikhil
Published: April 2023

Figure S5
Supplementary Data from Adenosine 2A Receptor Blockade as an Immunotherapy for Treatment-Refractory Renal Cell Cancer
Authors: Fong Lawrence , Hotson Andrew , Powderly John D. , Sznol Mario , Heist Rebecca S. , Choueiri Toni K. , George Saby , Hughes Brett G.M. , Hellmann Matthew D. , Shepard Dale R. , Rini Brian I. , Kummar Shivaani , Weise Amy M. , Riese Matthew J. , Markman Ben , Emens Leisha A. , Mahadevan Daruka , Luke Jason J. , Laport Ginna , Brody Joshua D. , Hernandez-Aya Leonel , Bonomi Philip , Goldman Jonathan W. , Berim Lyudmyla , Renouf Daniel J. , Goodwin Rachel A. , Munneke Brian , Ho Po Y. , Hsieh Jessica , McCaffery Ian , Kwei Long , Willingham Stephen B. , Miller Richard A.
Published: April 2023

Supplemental Appendix
Supplemental Figure 2 from The Genomic Landscape of Intrinsic and Acquired Resistance to Cyclin-Dependent Kinase 4/6 Inhibitors in Patients with Hormone Receptor–Positive Metastatic Breast Cancer
Authors: Wander Seth A. , Cohen Ofir , Gong Xueqian , Johnson Gabriela N. , Buendia-Buendia Jorge E. , Lloyd Maxwell R. , Kim Dewey , Luo Flora , Mao Pingping , Helvie Karla , Kowalski Kailey J. , Nayar Utthara , Waks Adrienne G. , Parsons Stephen H. , Martinez Ricardo , Litchfield Lacey M. , Ye Xiang S. , Yu Chunping , Jansen Valerie M. , Stille John R. , Smith Patricia S. , Oakley Gerard J. , Chu Quincy S. , Batist Gerald , Hughes Melissa E. , Kremer Jill D. , Garraway Levi A. , Winer Eric P. , Tolaney Sara M. , Lin Nancy U. , Buchanan Sean G. , Wagle Nikhil
Published: April 2023

Figure S2
Supplemental Figure 1 from The Genomic Landscape of Intrinsic and Acquired Resistance to Cyclin-Dependent Kinase 4/6 Inhibitors in Patients with Hormone Receptor–Positive Metastatic Breast Cancer
Authors: Wander Seth A. , Cohen Ofir , Gong Xueqian , Johnson Gabriela N. , Buendia-Buendia Jorge E. , Lloyd Maxwell R. , Kim Dewey , Luo Flora , Mao Pingping , Helvie Karla , Kowalski Kailey J. , Nayar Utthara , Waks Adrienne G. , Parsons Stephen H. , Martinez Ricardo , Litchfield Lacey M. , Ye Xiang S. , Yu Chunping , Jansen Valerie M. , Stille John R. , Smith Patricia S. , Oakley Gerard J. , Chu Quincy S. , Batist Gerald , Hughes Melissa E. , Kremer Jill D. , Garraway Levi A. , Winer Eric P. , Tolaney Sara M. , Lin Nancy U. , Buchanan Sean G. , Wagle Nikhil
Published: April 2023

Figure S1
Supplementary Table S3 from Gain-of-Function Genetic Alterations of G9a Drive Oncogenesis
Authors: Kato Shinichiro , Weng Qing Yu , Insco Megan L. , Chen Kevin Y. , Muralidhar Sathya , Pozniak Joanna , Diaz Joey Mark S. , Drier Yotam , Nguyen Nhu , Lo Jennifer A. , van Rooijen Ellen , Kemeny Lajos V. , Zhan Yao , Feng Yang , Silkworth Whitney , Powell C. Thomas , Liau Brian B. , Xiong Yan , Jin Jian , Newton-Bishop Julia , Zon Leonard I. , Bernstein Bradley E. , Fisher David E.
Published: April 2023

GSEA for KEGG pathway genesets G9a-knockdowned Hs944T cells
Supplementary Methods from Golgi Acidification by NHE7 Regulates Cytosolic pH Homeostasis in Pancreatic Cancer Cells
Authors: Galenkamp Koen M.O. , Sosicka Paulina , Jung Michael , Recouvreux M. Victoria , Zhang Yijuan , Moldenhauer Matthew R. , Brandi Giovanni , Freeze Hudson H. , Commisso Cosimo
Published: April 2023

Supplementary Methods
Figure S3 from Triplet Therapy with Palbociclib, Taselisib, and Fulvestrant in PIK3CA-Mutant Breast Cancer and Doublet Palbociclib and Taselisib in Pathway-Mutant Solid Cancers
Authors: Pascual Javier , Lim Joline S.J. , Macpherson Iain R. , Armstrong Anne C. , Ring Alistair , Okines Alicia F.C. , Cutts Rosalind J. , Herrera-Abreu Maria Teresa , Garcia-Murillas Isaac , Pearson Alex , Hrebien Sarah , Gevensleben Heidrun , Proszek Paula Z. , Hubank Michael , Hills Margaret , King Jenny , Parmar Mona , Prout Toby , Finneran Laura , Malia Jason , Swales Karen E. , Ruddle Ruth , Raynaud Florence I. , Turner Alison , Hall Emma , Yap Timothy A. , Lopez Juanita S. , Turner Nicholas C.
Published: April 2023

Efficacy of doublet palbociclib plus taselesib in advanced solid tumors
Figure S1 from Triplet Therapy with Palbociclib, Taselisib, and Fulvestrant in PIK3CA-Mutant Breast Cancer and Doublet Palbociclib and Taselisib in Pathway-Mutant Solid Cancers
Authors: Pascual Javier , Lim Joline S.J. , Macpherson Iain R. , Armstrong Anne C. , Ring Alistair , Okines Alicia F.C. , Cutts Rosalind J. , Herrera-Abreu Maria Teresa , Garcia-Murillas Isaac , Pearson Alex , Hrebien Sarah , Gevensleben Heidrun , Proszek Paula Z. , Hubank Michael , Hills Margaret , King Jenny , Parmar Mona , Prout Toby , Finneran Laura , Malia Jason , Swales Karen E. , Ruddle Ruth , Raynaud Florence I. , Turner Alison , Hall Emma , Yap Timothy A. , Lopez Juanita S. , Turner Nicholas C.
Published: April 2023

Escalation phase dose levels and final recruitment
Table S6 from Aggressive PDACs Show Hypomethylation of Repetitive Elements and the Execution of an Intrinsic IFN Program Linked to a Ductal Cell of Origin
Authors: Espinet Elisa , Gu Zuguang , Imbusch Charles D. , Giese Nathalia A. , Büscher Magdalena , Safavi Mariam , Weisenburger Silke , Klein Corinna , Vogel Vanessa , Falcone Mattia , Insua-Rodríguez Jacob , Reitberger Manuel , Thiel Vera , Kossi Steffi O. , Muckenhuber Alexander , Sarai Karnjit , Lee Alex Y.L. , Backx Elyne , Zarei Soheila , Gaida Matthias M. , Rodríguez-Paredes Manuel , Donato Elisa , Yen Hsi-Yu , Eils Roland , Schlesner Matthias , Pfarr Nicole , Hackert Thilo , Plass Christoph , Brors Benedikt , Steiger Katja , Weichenhan Dieter , Arda H. Efsun , Rooman Ilse , Kopp Janel L. , Strobel Oliver , Weichert Wilko , Sprick Martin R. , Trumpp Andreas
Published: April 2023

MC1vsMC2 DE genes
Supplementary Table 7 from Inactivation of Fbxw7 Impairs dsRNA Sensing and Confers Resistance to PD-1 Blockade
Authors: Gstalder Cécile , Liu David , Miao Diana , Lutterbach Bart , DeVine Alexander L. , Lin Chenyu , Shettigar Megha , Pancholi Priya , Buchbinder Elizabeth I. , Carter Scott L. , Manos Michael P. , Rojas-Rudilla Vanesa , Brennick Ryan , Gjini Evisa , Chen Pei-Hsuan , Lako Ana , Rodig Scott , Yoon Charles H. , Freeman Gordon J. , Barbie David A. , Hodi F. Stephen , Miles Wayne , Van Allen Eliezer M. , Haq Rizwan
Published: April 2023

Antibodies used in this manuscript
Supplementary Table 6 from Inactivation of Fbxw7 Impairs dsRNA Sensing and Confers Resistance to PD-1 Blockade
Authors: Gstalder Cécile , Liu David , Miao Diana , Lutterbach Bart , DeVine Alexander L. , Lin Chenyu , Shettigar Megha , Pancholi Priya , Buchbinder Elizabeth I. , Carter Scott L. , Manos Michael P. , Rojas-Rudilla Vanesa , Brennick Ryan , Gjini Evisa , Chen Pei-Hsuan , Lako Ana , Rodig Scott , Yoon Charles H. , Freeman Gordon J. , Barbie David A. , Hodi F. Stephen , Miles Wayne , Van Allen Eliezer M. , Haq Rizwan
Published: April 2023

Sequences of primers
Figure S3 from Machine-Learning and Chemicogenomics Approach Defines and Predicts Cross-Talk of Hippo and MAPK Pathways
Authors: Pham Trang H. , Hagenbeek Thijs J. , Lee Ho-June , Li Jason , Rose Christopher M. , Lin Eva , Yu Mamie , Martin Scott E. , Piskol Robert , Lacap Jennifer A. , Sampath Deepak , Pham Victoria C. , Modrusan Zora , Lill Jennie R. , Klijn Christiaan , Malek Shiva , Chang Matthew T. , Dey Anwesha
Published: April 2023

Supplementary Figure 3
Supplementary Data from The Hepatic Microenvironment Uniquely Protects Leukemia Cells through Induction of Growth and Survival Pathways Mediated by LIPG
Authors: Ye Haobin , Minhajuddin Mohammad , Krug Anna , Pei Shanshan , Chou Chih-Hsing , Culp-Hill Rachel , Ponder Jessica , De Bloois Erik , Schniedewind Björn , Amaya Maria L. , Inguva Anagha , Stevens Brett M. , Pollyea Daniel A. , Christians Uwe , Grimes H. Leighton , D'Alessandro Angelo , Jordan Craig T.
Published: April 2023

Supplemental Table 2
Table S5 from The Lipogenic Regulator SREBP2 Induces Transferrin in Circulating Melanoma Cells and Suppresses Ferroptosis
Authors: Hong Xin , Roh Whijae , Sullivan Ryan J. , Wong Keith H.K. , Wittner Ben S. , Guo Hongshan , Dubash Taronish D. , Sade-Feldman Moshe , Wesley Benjamin , Horwitz Elad , Boland Genevieve M. , Marvin Dieuwke L. , Bonesteel Todd , Lu Chenyue , Aguet François , Burr Risa , Freeman Samuel S. , Parida Laxmi , Calhoun Katherine , Jewett Michelle K. , Nieman Linda T. , Hacohen Nir , Näär Anders M. , Ting David T. , Toner Mehmet , Stott Shannon L. , Getz Gad , Maheswaran Shyamala , Haber Daniel A.
Published: April 2023

Table S5
Table S3 from Epigenomics and Single-Cell Sequencing Define a Developmental Hierarchy in Langerhans Cell Histiocytosis
Authors: Halbritter Florian , Farlik Matthias , Schwentner Raphaela , Jug Gunhild , Fortelny Nikolaus , Schnöller Thomas , Pisa Hanja , Schuster Linda C. , Reinprecht Andrea , Czech Thomas , Gojo Johannes , Holter Wolfgang , Minkov Milen , Bauer Wolfgang M. , Simonitsch-Klupp Ingrid , Bock Christoph , Hutter Caroline
Published: April 2023

Enrichment analysis. Detailed results of the enrichment analyses of genes and genomic region sets.
Supplementary Data from Utilization of COVID-19 Treatments and Clinical Outcomes among Patients with Cancer: A COVID-19 and Cancer Consortium (CCC19) Cohort Study
Authors: Rivera Donna R. , Peters Solange , Panagiotou Orestis A. , Shah Dimpy P. , Kuderer Nicole M. , Hsu Chih-Yuan , Rubinstein Samuel M. , Lee Brendan J. , Choueiri Toni K. , de Lima Lopes Gilberto , Grivas Petros , Painter Corrie A. , Rini Brian I. , Thompson Michael A. , Arcobello Jonathan , Bakouny Ziad , Doroshow Deborah B. , Egan Pamela C. , Farmakiotis Dimitrios , Fecher Leslie A. , Friese Christopher R. , Galsky Matthew D. , Goel Sanjay , Gupta Shilpa , Halfdanarson Thorvardur R. , Halmos Balazs , Hawley Jessica E. , Khaki Ali Raza , Lemmon Christopher A. , Mishra Sanjay , Olszewski Adam J. , Pennell Nathan A. , Puc Matthew M. , Revankar Sanjay G. , Schapira Lidia , Schmidt Andrew , Schwartz Gary K. , Shah Sumit A. , Wu Julie T. , Xie Zhuoer , Yeh Albert C. , Zhu Huili , Shyr Yu , Lyman Gary H. , Warner Jeremy L.
Published: April 2023

Supplemental tables, figures, and list of participants
Supplementary Figures from Timed Ang2-Targeted Therapy Identifies the Angiopoietin–Tie Pathway as Key Regulator of Fatal Lymphogenous Metastasis
Authors: Gengenbacher Nicolas , Singhal Mahak , Mogler Carolin , Hai Ling , Milde Laura , Pari Ashik Ahmed Abdul , Besemfelder Eva , Fricke Claudine , Baumann Daniel , Gehrs Stephanie , Utikal Jochen , Felcht Moritz , Hu Junhao , Schlesner Matthias , Offringa Rienk , Chintharlapalli Sudhakar R. , Augustin Hellmut G.
Published: April 2023

Supplementary Figures S1 - S28
Supplementary Table S24 from Cross-Species Single-Cell Analysis of Pancreatic Ductal Adenocarcinoma Reveals Antigen-Presenting Cancer-Associated Fibroblasts
Authors: Elyada Ela , Bolisetty Mohan , Laise Pasquale , Flynn William F. , Courtois Elise T. , Burkhart Richard A. , Teinor Jonathan A. , Belleau Pascal , Biffi Giulia , Lucito Matthew S. , Sivajothi Santhosh , Armstrong Todd D. , Engle Dannielle D. , Yu Kenneth H. , Hao Yuan , Wolfgang Christopher L. , Park Youngkyu , Preall Jonathan , Jaffee Elizabeth M. , Califano Andrea , Robson Paul , Tuveson David A.
Published: April 2023

Supplementary Table S24 shows VIPER analysis of protein activity in KPC mouse CAFs
Supplementary Table S18 from Cross-Species Single-Cell Analysis of Pancreatic Ductal Adenocarcinoma Reveals Antigen-Presenting Cancer-Associated Fibroblasts
Authors: Elyada Ela , Bolisetty Mohan , Laise Pasquale , Flynn William F. , Courtois Elise T. , Burkhart Richard A. , Teinor Jonathan A. , Belleau Pascal , Biffi Giulia , Lucito Matthew S. , Sivajothi Santhosh , Armstrong Todd D. , Engle Dannielle D. , Yu Kenneth H. , Hao Yuan , Wolfgang Christopher L. , Park Youngkyu , Preall Jonathan , Jaffee Elizabeth M. , Califano Andrea , Robson Paul , Tuveson David A.
Published: April 2023

Supplementary Table S18 shows the marker genes of the different clusters in all viable KPC dataset
Supplementary Tables from TRK xDFG Mutations Trigger a Sensitivity Switch from Type I to II Kinase Inhibitors
Authors: Cocco Emiliano , Lee Ji Eun , Kannan Srinivasaraghavan , Schram Alison M. , Won Helen H. , Shifman Sophie , Kulick Amanda , Baldino Laura , Toska Eneda , Arruabarrena-Aristorena Amaia , Kittane Srushti , Wu Fan , Cai Yanyan , Arena Sabrina , Mussolin Benedetta , Kannan Ram , Vasan Neil , Gorelick Alexander N. , Berger Michael F. , Novoplansky Ofra , Jagadeeshan Sankar , Liao Yi , Rix Uwe , Misale Sandra , Taylor Barry S. , Bardelli Alberto , Hechtman Jaclyn F. , Hyman David M. , Elkabets Moshe , de Stanchina Elisa , Verma Chandra S. , Ventura Andrea , Drilon Alexander , Scaltriti Maurizio
Published: April 2023

Supplementary Tables
Figure S3 from Antitumor T-cell Homeostatic Activation Is Uncoupled from Homeostatic Inhibition by Checkpoint Blockade
Authors: Marshall Netonia , Hutchinson Keino , Marron Thomas U. , Aleynick Mark , Hammerich Linda , Upadhyay Ranjan , Svensson-Arvelund Judit , Brown Brian D. , Merad Miriam , Brody Joshua D.
Published: April 2023

Immunotransplant requires double checkpoint blockade
Supplementary Data from Phenotypic Mapping of Pathologic Cross-Talk between Glioblastoma and Innate Immune Cells by Synthetic Genetic Tracing
Authors: Schmitt Matthias Jürgen , Company Carlos , Dramaretska Yuliia , Barozzi Iros , Göhrig Andreas , Kertalli Sonia , Großmann Melanie , Naumann Heike , Sanchez-Bailon Maria Pilar , Hulsman Danielle , Glass Rainer , Squatrito Massimo , Serresi Michela , Gargiulo Gaetano
Published: April 2023

Supplementary Figures, legends and References
Supplementary Table S4 from Cross-Species Genomics Reveals Oncogenic Dependencies in ZFTA/C11orf95 Fusion–Positive Supratentorial Ependymomas
Authors: Zheng Tuyu , Ghasemi David R. , Okonechnikov Konstantin , Korshunov Andrey , Sill Martin , Maass Kendra K. , Benites Goncalves da Silva Patricia , Ryzhova Marina , Gojo Johannes , Stichel Damian , Arabzade Amir , Kupp Robert , Benzel Julia , Taya Shinichiro , Adachi Toma , Shiraishi Ryo , Gerber Nicolas U. , Sturm Dominik , Ecker Jonas , Sievers Philipp , Selt Florian , Chapman Rebecca , Haberler Christine , Figarella-Branger Dominique , Reifenberger Guido , Fleischhack Gudrun , Rutkowski Stefan , Donson Andrew M. , Ramaswamy Vijay , Capper David , Ellison David W. , Herold-Mende Christel C. , Schüller Ulrich , Brandner Sebastian , Driever Pablo Hernáiz , Kros Johan M. , Snuderl Matija , Milde Till , Grundy Richard G. , Hoshino Mikio , Mack Stephen C. , Gilbertson Richard J. , Jones David T.W. , Kool Marcel , von Deimling Andreas , Pfister Stefan M. , Sahm Felix , Kawauchi Daisuke , Pajtler Kristian W.
Published: April 2023

Suppl. Table S4 - Histopathological evaluation of 25 cases
Supplementary Fig. S6 from Impact of HER2 Heterogeneity on Treatment Response of Early-Stage HER2-Positive Breast Cancer: Phase II Neoadjuvant Clinical Trial of T-DM1 Combined with Pertuzumab
Authors: Filho Otto Metzger , Viale Giuseppe , Stein Shayna , Trippa Lorenzo , Yardley Denise A. , Mayer Ingrid A. , Abramson Vandana G. , Arteaga Carlos L. , Spring Laura M. , Waks Adrienne G. , Wrabel Eileen , DeMeo Michelle K. , Bardia Aditya , Dell'Orto Patrizia , Russo Leila , King Tari A. , Polyak Kornelia , Michor Franziska , Winer Eric P. , Krop Ian E.
Published: April 2023

Logistic regression model calibration. A, Model 1. B, Model 2. C, Model 3. D, Model 4. E, Model 5. F, Model 6. G, Model 7. A-G, Calibration curves with summary statistics. Dxy is the Somer's rank correlation between the predicted and observed values; C (ROC) is the area under the curve; R2 is the Nagelkerke-Cox-Snell-Maddala-Magee R-squared index; D is the discrimination index; U is the Unreliability index; Q is the Quality index; the Brier score is the average squared difference in the predicted and observed values; Emax is the maximum absolute difference in predicted and loess-calibrated probabili-ties; Eavg is the average absolute difference in predicted and loess-calibrated probabilities; E90 is the 0.9 quantile of the absolute difference in predicted and loess-calibrated probabilities; S:z and S:p are the Spiegelhalter Z-test for calibration accuracy and its two-tailed p-value.
Supplementary Table 2 from SWI/SNF Complex Mutations Promote Thyroid Tumor Progression and Insensitivity to Redifferentiation Therapies
Authors: Saqcena Mahesh , Leandro-Garcia Luis Javier , Maag Jesper L.V. , Tchekmedyian Vatche , Krishnamoorthy Gnana P. , Tamarapu Prasanna P. , Tiedje Vera , Reuter Vincent , Knauf Jeffrey A. , de Stanchina Elisa , Xu Bin , Liao Xiao-Hui , Refetoff Samuel , Ghossein Ronald , Chi Ping , Ho Alan L. , Koche Richard P. , Fagin James A.
Published: April 2023

Significance of ATAC-RNA concordance
Figure S8 from SWI/SNF Complex Mutations Promote Thyroid Tumor Progression and Insensitivity to Redifferentiation Therapies
Authors: Saqcena Mahesh , Leandro-Garcia Luis Javier , Maag Jesper L.V. , Tchekmedyian Vatche , Krishnamoorthy Gnana P. , Tamarapu Prasanna P. , Tiedje Vera , Reuter Vincent , Knauf Jeffrey A. , de Stanchina Elisa , Xu Bin , Liao Xiao-Hui , Refetoff Samuel , Ghossein Ronald , Chi Ping , Ho Alan L. , Koche Richard P. , Fagin James A.
Published: April 2023

Effects of MEK inhibition on chromatin accessibility at thyroid lineage TF targets and at key MAPK downstream effectors in TBraf and TBraf/Swi-Snf deficient tumors.
Figure S4 from SWI/SNF Complex Mutations Promote Thyroid Tumor Progression and Insensitivity to Redifferentiation Therapies
Authors: Saqcena Mahesh , Leandro-Garcia Luis Javier , Maag Jesper L.V. , Tchekmedyian Vatche , Krishnamoorthy Gnana P. , Tamarapu Prasanna P. , Tiedje Vera , Reuter Vincent , Knauf Jeffrey A. , de Stanchina Elisa , Xu Bin , Liao Xiao-Hui , Refetoff Samuel , Ghossein Ronald , Chi Ping , Ho Alan L. , Koche Richard P. , Fagin James A.
Published: April 2023

Impact of Swi/Snf subunit loss on serum TSH levels and chromatin landscape.
Supplementary Data from Tilsotolimod with Ipilimumab Drives Tumor Responses in Anti–PD-1 Refractory Melanoma
Authors: Haymaker Cara , Johnson Daniel H. , Murthy Ravi , Bentebibel Salah-Eddine , Uemura Marc I. , Hudgens Courtney W. , Safa Houssein , James Marihella , Andtbacka Robert H.I. , Johnson Douglas B. , Shaheen Montaser , Davies Michael A. , Rahimian Shah , Chunduru Srinivas K. , Milton Denái R. , Tetzlaff Michael T. , Overwijk Willem W. , Hwu Patrick , Gabrail Nashat , Agrawal Sudhir , Doolittle Gary , Puzanov Igor , Markowitz Joseph , Bernatchez Chantale , Diab Adi
Published: April 2023

Supplementary Data from Tilsotolimod with Ipilimumab Drives Tumor Responses in Anti–PD-1 Refractory Melanoma
Supplementary Table S4 from Intrinsic Immunogenicity of Small Cell Lung Carcinoma Revealed by Its Cellular Plasticity
Authors: Mahadevan Navin R. , Knelson Erik H. , Wolff Jacquelyn O. , Vajdi Amir , Saigí Maria , Campisi Marco , Hong Deli , Thai Tran C. , Piel Brandon , Han Saemi , Reinhold Bruce B. , Duke-Cohan Jonathan S. , Poitras Michael J. , Taus Luke J. , Lizotte Patrick H. , Portell Andrew , Quadros Victor , Santucci Alison D. , Murayama Takahiko , Cañadas Israel , Kitajima Shunsuke , Akitsu Aoi , Fridrikh Maya , Watanabe Hideo , Reardon Brendan , Gokhale Prafulla C. , Paweletz Cloud P. , Awad Mark M. , Van Allen Eliezer M. , Lako Ana , Wang Xi-Tao , Chen Benjamin , Hong Fangxin , Sholl Lynette M. , Tolstorukov Michael Y. , Pfaff Kathleen , Jänne Pasi A. , Gjini Evisa , Edwards Robin , Rodig Scott , Reinherz Ellis L. , Oser Matthew G. , Barbie David A.
Published: April 2023

Supplementary Table S4
Table S3 from Microbiota-Centered Interventions: The Next Breakthrough in Immuno-Oncology?
Authors: Derosa Lisa , Routy Bertrand , Desilets Antoine , Daillère Romain , Terrisse Safae , Kroemer Guido , Zitvogel Laurence
Published: April 2023

Supplementary Table S3
Supplementary Table S2 from Transcriptional Silencing of ALDH2 Confers a Dependency on Fanconi Anemia Proteins in Acute Myeloid Leukemia
Authors: Yang Zhaolin , Wu Xiaoli S. , Wei Yiliang , Polyanskaya Sofya A. , Iyer Shruti V. , Jung Moonjung , Lach Francis P. , Adelman Emmalee R. , Klingbeil Olaf , Milazzo Joseph P. , Kramer Melissa , Demerdash Osama E. , Chang Kenneth , Goodwin Sara , Hodges Emily , McCombie W. Richard , Figueroa Maria E. , Smogorzewska Agata , Vakoc Christopher R.
Published: April 2023

CRISPR screening data using the E2/E3 sgRNA library in 12 cell lines.
Supplementary Data from Inhibition of CDK4/6 Promotes CD8 T-cell Memory Formation
Authors: Heckler Max , Ali Lestat R. , Clancy-Thompson Eleanor , Qiang Li , Ventre Katherine S. , Lenehan Patrick , Roehle Kevin , Luoma Adrienne , Boelaars Kelly , Peters Vera , McCreary Julia , Boschert Tamara , Wang Eric S. , Suo Shengbao , Marangoni Francesco , Mempel Thorsten R. , Long Henry W. , Wucherpfennig Kai W. , Dougan Michael , Gray Nathanael S. , Yuan Guo-Cheng , Goel Shom , Tolaney Sara M. , Dougan Stephanie K.
Published: April 2023

Combined 7 supplemental figures and 1 supplemental table
Supplementary Table S2 from Pharmacologic Activation of p53 Triggers Viral Mimicry Response Thereby Abolishing Tumor Immune Evasion and Promoting Antitumor Immunity
Authors: Zhou Xiaolei , Singh Madhurendra , Sanz Santos Gema , Guerlavais Vincent , Carvajal Luis A. , Aivado Manuel , Zhan Yue , Oliveira Mariana M.S. , Westerberg Lisa S. , Annis D. Allen , Johnsen John Inge , Selivanova Galina
Published: April 2023

Raw data for FACs profiling of immune cells on CT26
Supplementary Table 1 from Genetic Screens Identify a Context-Specific PI3K/p27Kip1 Node Driving Extrahepatic Biliary Cancer
Authors: Falcomatà Chiara , Bärthel Stefanie , Ulrich Angelika , Diersch Sandra , Veltkamp Christian , Rad Lena , Boniolo Fabio , Solar Myriam , Steiger Katja , Seidler Barbara , Zukowska Magdalena , Madej Joanna , Wang Mingsong , Öllinger Rupert , Maresch Roman , Barenboim Maxim , Eser Stefan , Tschurtschenthaler Markus , Mehrabi Arianeb , Roessler Stephanie , Goeppert Benjamin , Kind Alexander , Schnieke Angelika , Robles Maria S. , Bradley Allan , Schmid Roland M. , Schmidt-Supprian Marc , Reichert Maximilian , Weichert Wilko , Sansom Owen J. , Morton Jennifer P. , Rad Roland , Schneider Günter , Saur Dieter
Published: April 2023

Common insertion sites of piggyBac transposon mutagenesis screen.
Supplementary Table 2 from A Humanized Animal Model Predicts Clonal Evolution and Therapeutic Vulnerabilities in Myeloproliferative Neoplasms
Authors: Celik Hamza , Krug Ethan , Zhang Christine R. , Han Wentao , Issa Nancy , Koh Won Kyun , Bjeije Hassan , Kukhar Ostap , Allen Maggie , Li Tiandao , Fisher Daniel A.C. , Fowles Jared S. , Wong Terrence N. , Stubbs Matthew C. , Koblish Holly K. , Oh Stephen T. , Challen Grant A.
Published: April 2023

Exome sequencing results.
Supplementary Figures from A Humanized Animal Model Predicts Clonal Evolution and Therapeutic Vulnerabilities in Myeloproliferative Neoplasms
Authors: Celik Hamza , Krug Ethan , Zhang Christine R. , Han Wentao , Issa Nancy , Koh Won Kyun , Bjeije Hassan , Kukhar Ostap , Allen Maggie , Li Tiandao , Fisher Daniel A.C. , Fowles Jared S. , Wong Terrence N. , Stubbs Matthew C. , Koblish Holly K. , Oh Stephen T. , Challen Grant A.
Published: April 2023

Supplementary Figures 1-7
Supplementary Figure S14 from Resistance to Durvalumab and Durvalumab plus Tremelimumab Is Associated with Functional STK11 Mutations in Patients with Non–Small Cell Lung Cancer and Is Reversed by STAT3 Knockdown
Authors: Pore Nabendu , Wu Song , Standifer Nathan , Jure-Kunkel Maria , de los Reyes Melissa , Shrestha Yashaswi , Halpin Rebecca , Rothstein Raymond , Mulgrew Kathy , Blackmore Stephen , Martin Philip , Meekin John , Griffin Matthew , Bisha Ina , Proia Theresa A. , Miragaia Ricardo J. , Herbst Ronald , Gupta Ashok , Abdullah Shaad E. , Raja Rajiv , Frigault Melanie M. , Barrett J. Carl , Dennis Phillip A. , Ascierto Maria Libera , Oberst Michael D.
Published: April 2023

Dependence of STAT3 ASO and combination treatment efficacy on CD8+ or CD4+ T cells in CT26 STK11 KO clone 26C16. Efficacy of STAT3 ASO, CPIs, and combination treatments as indicated in mice pre-treated with (A) control antibody, (B) anti-CD8 depleting mAb, and (C) anti-CD4 depleting mAb.
Supplementary Figures from Blocking Short-Form Ron Eliminates Breast Cancer Metastases through Accumulation of Stem-Like CD4+ T Cells That Subvert Immunosuppression
Authors: Lai Shu-Chin Alicia , Gundlapalli Harika , Ekiz H. Atakan , Jiang Amanda , Fernandez Elvelyn , Welm Alana L.
Published: April 2023

Supplementary Figures
Table S2 from ZFTA Translocations Constitute Ependymoma Chromatin Remodeling and Transcription Factors
Authors: Kupp Robert , Ruff Lisa , Terranova Sabrina , Nathan Erica , Ballereau Stephane , Stark Rory , Sekhar Reddy Chilamakuri Chandra , Hoffmann Nadin , Wickham-Rahrmann Katherine , Widdess Marcus , Arabzade Amir , Zhao Yanhua , Varadharajan Srinidhi , Zheng Tuyu , Murugesan Mohankumar , Pfister Stefan M. , Kawauchi Daisuke , Pajtler Kristian W. , Deneen Benjamin , Mack Stephen C. , Masih Katherine E. , Gryder Berkley E. , Khan Javed , Gilbertson Richard J.
Published: April 2023

Antibodies, reagents and commercial assays
Figure S5 from ZFTA Translocations Constitute Ependymoma Chromatin Remodeling and Transcription Factors
Authors: Kupp Robert , Ruff Lisa , Terranova Sabrina , Nathan Erica , Ballereau Stephane , Stark Rory , Sekhar Reddy Chilamakuri Chandra , Hoffmann Nadin , Wickham-Rahrmann Katherine , Widdess Marcus , Arabzade Amir , Zhao Yanhua , Varadharajan Srinidhi , Zheng Tuyu , Murugesan Mohankumar , Pfister Stefan M. , Kawauchi Daisuke , Pajtler Kristian W. , Deneen Benjamin , Mack Stephen C. , Masih Katherine E. , Gryder Berkley E. , Khan Javed , Gilbertson Richard J.
Published: April 2023

ZFTA-RELAFUS1 domain interactomes
Figure S7 from Cholesterol Auxotrophy as a Targetable Vulnerability in Clear Cell Renal Cell Carcinoma
Authors: Riscal Romain , Bull Caroline J. , Mesaros Clementina , Finan Jennifer M. , Carens Madeleine , Ho Elaine S. , Xu Jimmy P. , Godfrey Jason , Brennan Paul , Johansson Mattias , Purdue Mark P. , Chanock Stephen J. , Mariosa Daniela , Timpson Nicholas J. , Vincent Emma E. , Keith Brian , Blair Ian A. , Skuli Nicolas , Simon M. Celeste
Published: April 2023

Figure S7 shows the cholesterol levels in tumor of mice treated with SCARB1 inhibitor, related to Figure 5. Shows also that ccRCC cells require the import of cholesterol through SCARB1 to prevent ROS accumulation, related to Figure 7.
Supplementary Data from Activity and Safety of Mobocertinib (TAK-788) in Previously Treated Non–Small Cell Lung Cancer with EGFR Exon 20 Insertion Mutations from a Phase I/II Trial
Authors: Riely Gregory J. , Neal Joel W. , Camidge D. Ross , Spira Alexander I. , Piotrowska Zofia , Costa Daniel B. , Tsao Anne S. , Patel Jyoti D. , Gadgeel Shirish M. , Bazhenova Lyudmila , Zhu Viola W. , West Howard L. , Mekhail Tarek , Gentzler Ryan D. , Nguyen Danny , Vincent Sylvie , Zhang Steven , Lin Jianchang , Bunn Veronica , Jin Shu , Li Shuanglian , Jänne Pasi A.
Published: April 2023

Supplemental Information
Table S2 from Rates and Patterns of Clonal Oncogenic Mutations in the Normal Human Brain
Authors: Ganz Javier , Maury Eduardo A. , Becerra Basheer , Bizzotto Sara , Doan Ryan N. , Kenny Connor J. , Shin Taehwan , Kim Junho , Zhou Zinan , Ligon Keith L. , Lee Eunjung Alice , Walsh Christopher A.
Published: April 2023

Supplementary information related to GTEx and BrainVar analyses.
Supplementary Table S5 from PRC2 Inhibitors Overcome Glucocorticoid Resistance Driven by NSD2 Mutation in Pediatric Acute Lymphoblastic Leukemia
Authors: Li Jianping , Hlavka-Zhang Julia , Shrimp Jonathan H. , Piper Crissandra , Dupéré-Richér Daphne , Roth Jacob S. , Jing Duohui , Casellas Román Heidi L. , Troche Catalina , Swaroop Alok , Kulis Marta , Oyer Jon A. , Will Christine M. , Shen Min , Riva Alberto , Bennett Richard L. , Ferrando Adolfo A. , Hall Matthew D. , Lock Richard B. , Licht Jonathan D.
Published: April 2023

List of genes bound and regulated by GR in NSD2 wild-type RCH-ACV and RMPI-8402 cells
Supplementary Tables from Rlf–Mycl Gene Fusion Drives Tumorigenesis and Metastasis in a Mouse Model of Small Cell Lung Cancer
Authors: Ciampricotti Metamia , Karakousi Triantafyllia , Richards Allison L. , Quintanal-Villalonga Àlvaro , Karatza Angeliki , Caeser Rebecca , Costa Emily A. , Allaj Viola , Manoj Parvathy , Spainhower Kyle B. , Kombak Faruk E. , Sanchez-Rivera Francisco J. , Jaspers Janneke E. , Zavitsanou Anastasia-Maria , Maddalo Danilo , Ventura Andrea , Rideout William M. , Akama-Garren Elliot H. , Jacks Tyler , Donoghue Mark T.A. , Sen Triparna , Oliver Trudy G. , Poirier John T. , Papagiannakopoulos Thales , Rudin Charles M.
Published: April 2023

Tables S1 - S3
Supplementary Table S4 from PRC2 Inhibitors Overcome Glucocorticoid Resistance Driven by NSD2 Mutation in Pediatric Acute Lymphoblastic Leukemia
Authors: Li Jianping , Hlavka-Zhang Julia , Shrimp Jonathan H. , Piper Crissandra , Dupéré-Richér Daphne , Roth Jacob S. , Jing Duohui , Casellas Román Heidi L. , Troche Catalina , Swaroop Alok , Kulis Marta , Oyer Jon A. , Will Christine M. , Shen Min , Riva Alberto , Bennett Richard L. , Ferrando Adolfo A. , Hall Matthew D. , Lock Richard B. , Licht Jonathan D.
Published: April 2023

Combined RNA-Seq analysis of 4 ALL cell lines (RCH-ACV, SEM, RPMI-8402 and CEM) in response to dexamethasone treatment
Supplementary Figures from Clinical and Biological Subtypes of B-cell Lymphoma Revealed by Microenvironmental Signatures
Authors: Kotlov Nikita , Bagaev Alexander , Revuelta Maria V. , Phillip Jude M. , Cacciapuoti Maria Teresa , Antysheva Zoya , Svekolkin Viktor , Tikhonova Ekaterina , Miheecheva Natalia , Kuzkina Natalia , Nos Grigorii , Tabbo Fabrizio , Frenkel Felix , Ghione Paola , Tsiper Maria , Almog Nava , Fowler Nathan , Melnick Ari M. , Leonard John P. , Inghirami Giorgio , Cerchietti Leandro
Published: April 2023

Supplementary Figures
Supplementary Tables S2-S6 from Genetic Determinants of EGFR-Driven Lung Cancer Growth and Therapeutic Response In Vivo
Authors: Foggetti Giorgia , Li Chuan , Cai Hongchen , Hellyer Jessica A. , Lin Wen-Yang , Ayeni Deborah , Hastings Katherine , Choi Jungmin , Wurtz Anna , Andrejka Laura , Maghini Dylan G. , Rashleigh Nicholas , Levy Stellar , Homer Robert , Gettinger Scott N. , Diehn Maximilian , Wakelee Heather A. , Petrov Dmitri A. , Winslow Monte M. , Politi Katerina
Published: April 2023

Supplementary Tables
Supplementary Data from Overcoming PD-1 Blockade Resistance with CpG-A Toll-Like Receptor 9 Agonist Vidutolimod in Patients with Metastatic Melanoma
Authors: Ribas Antoni , Medina Theresa , Kirkwood John M. , Zakharia Yousef , Gonzalez Rene , Davar Diwakar , Chmielowski Bartosz , Campbell Katie M. , Bao Riyue , Kelley Heather , Morris Aaron , Mauro David , Wooldridge James E. , Luke Jason J. , Weiner George J. , Krieg Arthur M. , Milhem Mohammed M.
Published: April 2023

Supplementary figures 1-6, supplementary tables 1-4
Supplementary Tables from A Phase I Trial of Regional Mesothelin-Targeted CAR T-cell Therapy in Patients with Malignant Pleural Disease, in Combination with the Anti–PD-1 Agent Pembrolizumab
Authors: Adusumilli Prasad S. , Zauderer Marjorie G. , Rivière Isabelle , Solomon Stephen B. , Rusch Valerie W. , O'Cearbhaill Roisin E. , Zhu Amy , Cheema Waseem , Chintala Navin K. , Halton Elizabeth , Pineda John , Perez-Johnston Rocio , Tan Kay See , Daly Bobby , Araujo Filho Jose A. , Ngai Daniel , McGee Erin , Vincent Alain , Diamonte Claudia , Sauter Jennifer L. , Modi Shanu , Sikder Devanjan , Senechal Brigitte , Wang Xiuyan , Travis William D. , Gönen Mithat , Rudin Charles M. , Brentjens Renier J. , Jones David R. , Sadelain Michel
Published: April 2023

Supplemental Tables
Supplementary Material from A Phase I Trial of Regional Mesothelin-Targeted CAR T-cell Therapy in Patients with Malignant Pleural Disease, in Combination with the Anti–PD-1 Agent Pembrolizumab
Authors: Adusumilli Prasad S. , Zauderer Marjorie G. , Rivière Isabelle , Solomon Stephen B. , Rusch Valerie W. , O'Cearbhaill Roisin E. , Zhu Amy , Cheema Waseem , Chintala Navin K. , Halton Elizabeth , Pineda John , Perez-Johnston Rocio , Tan Kay See , Daly Bobby , Araujo Filho Jose A. , Ngai Daniel , McGee Erin , Vincent Alain , Diamonte Claudia , Sauter Jennifer L. , Modi Shanu , Sikder Devanjan , Senechal Brigitte , Wang Xiuyan , Travis William D. , Gönen Mithat , Rudin Charles M. , Brentjens Renier J. , Jones David R. , Sadelain Michel
Published: April 2023

Supplemental Material
Supplementary Figure 1 from Nongenetic Evolution Drives Lung Adenocarcinoma Spatial Heterogeneity and Progression
Authors: Tavernari Daniele , Battistello Elena , Dheilly Elie , Petruzzella Aaron S. , Mina Marco , Sordet-Dessimoz Jessica , Peters Solange , Krueger Thorsten , Gfeller David , Riggi Nicolo , Oricchio Elisa , Letovanec Igor , Ciriello Giovanni
Published: April 2023

Supplementary Figure 1
Supplementary Tables S1-S6, S17-S18 from Fasting-Mimicking Diet Is Safe and Reshapes Metabolism and Antitumor Immunity in Patients with Cancer
Authors: Vernieri Claudio , Fucà Giovanni , Ligorio Francesca , Huber Veronica , Vingiani Andrea , Iannelli Fabio , Raimondi Alessandra , Rinchai Darawan , Frigè Gianmaria , Belfiore Antonino , Lalli Luca , Chiodoni Claudia , Cancila Valeria , Zanardi Federica , Ajazi Arta , Cortellino Salvatore , Vallacchi Viviana , Squarcina Paola , Cova Agata , Pesce Samantha , Frati Paola , Mall Raghvendra , Corsetto Paola Antonia , Rizzo Angela Maria , Ferraris Cristina , Folli Secondo , Garassino Marina Chiara , Capri Giuseppe , Bianchi Giulia , Colombo Mario Paolo , Minucci Saverio , Foiani Marco , Longo Valter Daniel , Apolone Giovanni , Torri Valter , Pruneri Giancarlo , Bedognetti Davide , Rivoltini Licia , de Braud Filippo
Published: April 2023

Supplementary Tables S1-S6_S17-S18
Supplementary Figure from EGFR Inhibition Potentiates FGFR Inhibitor Therapy and Overcomes Resistance in FGFR2 Fusion–Positive Cholangiocarcinoma
Authors: Wu Qibiao , Zhen Yuanli , Shi Lei , Vu Phuong , Greninger Patricia , Adil Ramzi , Merritt Joshua , Egan Regina , Wu Meng-Ju , Yin Xunqin , Ferrone Cristina R. , Deshpande Vikram , Baiev Islam , Pinto Christopher J. , McLoughlin Daniel E. , Walmsley Charlotte S. , Stone James R. , Gordan John D. , Zhu Andrew X. , Juric Dejan , Goyal Lipika , Benes Cyril H. , Bardeesy Nabeel
Published: April 2023

Supplementary Figure from EGFR Inhibition Potentiates FGFR Inhibitor Therapy and Overcomes Resistance in FGFR2 Fusion–Positive Cholangiocarcinoma