bluuebunny/crossref_metadata_2025 huggingface dataset:
Effects of Sampling Time and Depth on Phytoplankton Metrics in Agricultural Irrigation Ponds
Authors: Smith Jaclyn E. , Wolny Jennifer L. , Stocker Matthew D. , Pachepsky Yakov
Published: April 2024

Spatiotemporal variations of phytoplankton populations in agricultural irrigation ponds need to be accounted for in order to properly assess water quality. Phytoplankton cell and photosynthetic pigment concentrations are two common metrics used to characterize phytoplankton communities. This work evaluated depth and time of the day as factors affecting discrete sampling of phytoplankton. The abundance of chlorophytes, diatoms, cyanobacteria, flagellates, and dinoflagellates, as well as chlorophyll-a and phycocyanin pigments, were determined in samples taken at the surface and depth, in 0.5 m increments, in three to five spatial replications at 9 a.m., 12 p.m., and 3 p.m. in two ponds in Maryland, USA. Depth was a significant factor for photosynthetic pigment concentration variations in both ponds on most sampling dates and time of day was a significant factor for photosynthetic pigment concentrations in half of the sampling dates. Depth was not a significant factor in cell concentration variations for any of the phytoplankton groups observed, but time of day was a significant factor in 40% of the sampling dates. Two distinct patterns in pigment concentration daily variation were observed. The first featured a continuous increase with depth throughout the day. The second showed maximum concentrations at the surface in the morning changing to maximum concentrations at 0.5 m depth at 12 p.m. and 3 p.m.; these patterns corresponded to different morning solar irradiance levels. This indicates that sampling depth and time can be a significant factor when evaluating photosynthetic pigments and should be accounted for in monitoring programs that rely on pigments for decision-making.
Valorization of Wood Residues from Vegetation Suppression during Wind Energy Plant Implementation and Its Potential for Renewable Phenolic Compounds through Flash Pyrolysis: A Case Study in Northeast Brazil’s Semi-Arid Region
Authors: Almeida Marcela Cristina Pereira dos Santos , Silva Janduir Egito da , Batista Willame Gomes da Silva , Alves José Luiz Francisco , Melo Dulce Maria de Araújo , Pimenta Alexandre Santos , Braga Renata Martins
Published: April 2024

In the past few years, wind power has become a viable alternative in Brazil to diversify the energy mix and mitigate pollutant emissions from fossil fuels. Significant wind energy generation potential is inherent in the Brazilian Northeast state of Rio Grande do Norte, due to prevailing strong winds along the coastline and elevated regions. However, clean and renewable wind energy may lead to potential biodiversity impacts, including the removal of native vegetation during plant construction and operation. This case study explores the flash pyrolysis-based valorization of three commonly suppressed species, namely Cenostigma pyramidale (CP), Commiphora leptophloeos (CL), and Aspidosperma pyrifolium (AP), in a wind farm situated within the Mato Grande region of Rio Grande do Norte State. The study centers on determining their bioenergy-related properties and assessing their potential for producing phenolic-rich bio-oil. The investigation of three wood residues as potential sources of high-value chemicals, specifically phenolic compounds, was conducted using a micro-furnace type temperature programmable pyrolyzer combined with gas chromatography/mass spectrometry (Py–GC/MS setup). The range of higher heating values observed for three wood residues was 17.5–18.4 MJ kg−1, with the highest value attributed to AP wood residue. The bulk density ranged from 126.5 to 268.7 kg m−3, while ash content, volatile matter content, fixed carbon content, and lignin content were within the respective ranges of 0.8–2.9 wt.%, 78.5–89.6 wt.%, 2.6–9.5 wt.%, and 19.1–30.6 wt.%. Although the energy-related properties signifying the potential value of three wood residues as energy resources are evident, their applicability in the bioenergy sector can be expanded via pelleting or briquetting. Yields of phenolic compounds exceeding 40% from the volatile pyrolysis products of CL and AP wood residues at 500 °C make them favorable for phenolic-rich bio-oil production. The findings of this study endorse the utilization of wood residues resulting from vegetation suppression during the installation of wind energy plants as potential feedstocks for producing bioenergy and sustainable phenolic compounds. This presents a solution for addressing a regional environmental concern following the principles of green chemistry.
The Impact of Canopy on Nutrient Fluxes through Rainfall Partitioning in a Mixed Broadleaf and Coniferous Forest
Authors: Yang Junhui , Wang Anzhi , Shen Lidu , Dai Guanhua , Liu Yage , Zhang Yuan , Fei Wenli , Wu Jiabing
Published: April 2024

Rainfall constitutes the primary input in the nutrient flux within forest ecosystems. The forest canopy modulates this flux by partitioning rainfall and selectively absorbing or adding nutrients. In mixed forests, variation in tree species composition regulates rainwater chemical composition, potentially leading to spatial heterogeneity in nutrient distribution and influencing nutrient cycling processes. This study examined the partitioning of rainfall into throughfall and stemflow, as well as their associated nutrient concentrations and fluxes, in a mixed broadleaf and coniferous forest on Changbai Mountain in Northeast China. We observed a rising trend in nutrient contents from rainfall to throughfall and then stemflow. The nutrient contents of stemflow varied largely with tree species due to the differences in canopy structure and bark morphological characteristics. The nutrient input contributed by throughfall and stemflow was 92.30 kg ha−1 during the observation period, and most elements underwent passive leaching through washout except for F− and Na+. We note that the nutrient fluxes in stemflow differed among tree species, with Pinus koraiensis (PK) delivering more acid group anions and Quercus mongolica (QM) providing more cations. Our research provides new insights into nutrient cycling within mixed forest canopies, sparking a transformative advancement in forest management and protection strategies through hydrochemistry-driven solutions.
The Short-Term Effects of Heavy Thinning on Selected Soil Carbon Pools and Microbial Activity in a Young Aleppo Pine Forest
Authors: Lull Cristina , Gil-Ortiz Ricardo , Bautista Inmaculada , del Campo Antonio , Lidón Antonio
Published: April 2024

Pinus halepensis Miller is a widespread tree species in the western Mediterranean basin, where very dense monospecific stands can be found, especially in natural regeneration after forest fires. Silvicultural thinning can reduce the competition of trees for natural resources and favour their development, although its effect depends on the habitat. The present study aims to know the effects on the soil at the physicochemical and microbiological levels after a heavy thinning in a young pine forest stand with a high stocking density. The stand is on a slope where the soil depth tends to decrease with altitude, and shows changes in its physicochemical properties between the upper and lower zones. Several soil carbon fractions (i.e., soil organic carbon (SOC), water-soluble organic carbon (WSOC), and microbial biomass carbon (MBC)), microbial activity (basal soil respiration (BSR)) and enzyme activities (acid phosphatase (AP) and urease (UA)) were analysed at specific dates over a period of about five years after a heavy thinning. The changes in organic matter content were abrupt in the slope, conditioning the observed differences. It is highlighted that the SOC and WSOC contents in the mineral soil were 2.5- and 3.5-fold significantly higher, respectively, in the upper shallow zone compared to the lower deeper zone. This was also reflected in significantly higher levels of gravimetric water content (GWC) and MBC (both about 1.4-fold higher), with higher levels of BSR and UA, and 2.5-fold significantly higher levels of AP. As a result, most of the properties studied showed no significant differences between the thinning treatment and the untreated control. Results varying between dates, with a strong dependence on climate (soil temperature and humidity) of WSOC and UA. It can be concluded that the heavy thinning applied in this short-term case study favoured the growth conditions of the pine without negatively affecting the soil properties studied.
Effect of Bubbling on Ignition of PMMA Slab: Change in Thermo-Physical and Thermo-Radiative Properties
Authors: Vincent Chloë , Longuet Claire , Aprin Laurent , Slangen Pierre , Rambaud Guillaume , Ferry Laurent
Published: April 2024

In semi-transparent polymers, ignition is not only dependent on conductive thermal transfer into the material but also on in-depth absorption of the radiation. The aim of this work was to investigate the influence of bubbling on the thermo-physical and thermo-radiative properties of PMMA and how it may affect its ignition. PMMA plates of varying thickness were exposed to the heat flux of two radiative sources with different emission spectra. Exposure was stopped after different periods of time to study bubbling kinetics and bubble size distribution by optical microscopy. Front and back surface temperatures of samples were recorded during heat exposure. The results indicate that the bubble size distribution is closely related to the temperature gradient within the sample. Steep thermal gradients lead to small-sized bubbles underneath the exposed surface, while weak thermal gradients generate a wider size distribution with in-depth bubbling. All thermo-physical quantities k, ρ and Cp were shown to decrease with increasing bubbling degree. Likewise, it was highlighted that bubbling modifies the thermo-radiative properties of PMMA, especially in the near-infrared range. Transmittance decreases while absorbance increases with a bubbling degree. The increase in the absorption coefficient was attributed to multiple scattering by bubbles that expand the pathway of radiation into the materials. It was concluded that changes in both the thermo-physical and thermo-radiative properties with bubbling were likely to account for the delay in ignition observed when using the near-infrared heating source.
Postharvest Management of Fruits and Vegetables—Series II
Authors: Imahori Yoshihiro , Bai Jinhe
Published: April 2024

Fruits and vegetables are crucial nutritional sources of carbohydrates, protein, minerals, vitamins, and dietary fiber, offering significant benefits to human health [...]
Enhancing the Quality of Low-Salt Silver Carp (Hypophthalmichthys molitrix) Surimi Gel Using Psyllium Husk Powder: An Orthogonal Experimental Approach
Authors: Abbas Muhammad Safeer , Xia Lizhi , Li Qiang , Lu Yufeng , Liu Songkun , Lin Lin , Lu Jianfeng
Published: April 2024

Low-salt surimi production is crucial as it addresses health concerns related to sodium intake while maintaining the quality and shelf-life of seafood products. This research focused on optimizing the gelation conditions for silver carp surimi with the addition of psyllium husk powder at low salt concentrations (0.5% and 1%, w/w) to investigate the effects of psyllium husk powder concentration, temperature, and time on gel strength and water-holding capacity. The quality was assessed in terms of gel strength and water-holding capacity. Following a single-factor exploration, a three-level orthogonal experiment was designed to evaluate the influence of these three variables using a combined scoring system. Results indicated that psyllium husk powder levels between 0.1% and 0.3% (w/w) enhanced gel strength and water-holding capacity. The optimal conditions were identified as follows: 1% (w/w) NaCl with 0.2% (w/w) psyllium husk powder for 2.5 h at 35 °C, and 0.5% (w/w) NaCl with 0.3% (w/w) psyllium husk powder for 3 h at 35 °C. Texture profile analysis revealed that psyllium husk powder increased the hardness of the surimi gel, promoting myosin cross-linking and denser gel structure. Compared to traditional surimi gel, which relies on ionic bonds, the optimized gel showed higher levels of disulfide cross-linking and enhanced hydrophobic interactions, resulting in a stronger gel structure. Sensory evaluation suggested that surimi gels with psyllium husk powder were perceived as better than those without psyllium husk powder. The study concludes that selecting the appropriate psyllium husk powder quantity and thermal processing conditions based on salt concentration can significantly improve the quality of low-salt surimi gels. Error analysis using one-way ANOVA was performed on all experimental data and (p < 0.05) indicated the significant difference.
Potential Molecular Mechanisms of Alcohol Use Disorder with Non-Coding RNAs and Gut Microbiota for the Development of Superior Therapeutic Application
Authors: Nakashima Moeka , Suga Naoko , Yoshikawa Sayuri , Ikeda Yuka , Matsuda Satoru
Published: April 2024

Many investigations have evaluated the expression of noncoding RNAs (ncRNAs) as well as their related molecular functions and biological machineries in individuals with alcohol dependence. Alcohol dependence may be one of the most prevailing psychological disorders globally, and its pathogenesis is intricate and inadequately comprehended. There is substantial evidence indicating significant links between multiple genetic factors and the development of alcohol dependence. In particular, the critical roles of ncRNAs have been emphasized in the pathology of mental illnesses, probably including alcohol dependence. In the comprehension of the action of ncRNAs and their machineries of modification, furthermore, they have emerged as therapeutic targets for a variety of psychiatric illnesses, including alcohol dependence. It is worth mentioning that the dysregulated expression of ncRNAs has been regularly detected in individuals with alcohol dependence. An in-depth knowledge of the roles of ncRNAs and m6A modification may be valuable for the development of a novel treatment against alcohol dependence. In general, a more profound understanding of the practical roles of ncRNAs might make important contributions to the precise diagnosis and/or actual management of alcohol dependence. Here, in this review, we mostly focused on up-to-date knowledge regarding alterations and/or modifications in the expression of ncRNAs in individuals with alcohol dependence. Then, we present prospects for future research and therapeutic applications with a novel concept of the engram system.
Development and Characterization of a Novel FVB-PrkdcR2140C Mouse Model for Adriamycin-Induced Nephropathy
Authors: Watanabe Masaki , Ishii Yuki , Hashimoto Kazuki , Takimoto Hayato R. , Sasaki Nobuya
Published: April 2024

The Adriamycin (ADR) nephropathy model, which induces podocyte injury, is limited to certain mouse strains due to genetic susceptibilities, such as the PrkdcR2140C polymorphism. The FVB/N strain without the R2140C mutation resists ADR nephropathy. Meanwhile, a detailed analysis of the progression of ADR nephropathy in the FVB/N strain has yet to be conducted. Our research aimed to create a novel mouse model, the FVB-PrkdcR2140C, by introducing PrkdcR2140C into the FVB/NJcl (FVB) strain. Our study showed that FVB-PrkdcR2140C mice developed severe renal damage when exposed to ADR, as evidenced by significant albuminuria and tubular injury, exceeding the levels observed in C57BL/6J (B6)-PrkdcR2140C. This indicates that the FVB/N genetic background, in combination with the R2140C mutation, strongly predisposes mice to ADR nephropathy, highlighting the influence of genetic background on disease susceptibility. Using RNA sequencing and subsequent analysis, we identified several genes whose expression is altered in response to ADR nephropathy. In particular, Mmp7, Mmp10, and Mmp12 were highlighted for their differential expression between strains and their potential role in influencing the severity of kidney damage. Further genetic analysis should lead to identifying ADR nephropathy modifier gene(s), aiding in early diagnosis and providing novel approaches to kidney disease treatment and prevention.
Absolute Dating of Fault-Gouge Material Using Isothermal Thermoluminescence: An Example from the Nojima Fault Zone, SW Japan
Authors: Tsakalos Evangelos , Filippaki Eleni , Lin Aiming , Kazantzaki Maria , Nishiwaki Takafumi , Bassiakos Yannis
Published: April 2024

Establishing the absolute age of palaeoearthquakes is of great significance for the assessment of the seismicity and seismic hazards of a region. As such, several different geochronological techniques to date earthquake-related material have been developed to provide answers on the time of past earthquakes. The present study is part of a wider palaeoseismic research project conducted in the Nojima Fault Zone (NFZ), where the 1995 Mw 6.9 Kobe (Japan) earthquake was triggered, to assess the suitability of the isothermal thermoluminescence (ITL) dating technique on fine-grained quartz and medium-grained feldspar and to provide a sequence of ages for fault-rock samples separated from a drilled core that was retrieved from a depth of ~506 m. Our analysis reveals that ITL can produce consistent dating results and can be considered a reliable luminescence technique for the absolute dating of fault-gouge material. The produced ITL ages signified the existence of repeated seismic events within the NFZ that took place through the late Pleistocene period, with gouge ages spanning from 78.6 ± 4.2 to 13.4 ± 1.4 ka; however, overestimation of the produced ITL dating results may be apparent. Nonetheless, even though some degree of overestimation is considered, ITL dating results denote the oldest possible age boundary of formation (or luminescence signal resetting) of the collected fault-gouge layers.
Application of Electrical Resistivity Tomography in Geotechnical and Geoenvironmental Engineering Aspect
Authors: Alam Md Jobair Bin , Ahmed Asif , Alam Md Zahangir
Published: April 2024

Electrical resistivity tomography (ERT) has turned out to be one of the most applied and user-friendly geophysical methods in geotechnical and geoenvironmental research. ERT is an emerging technology that is becoming popular nowadays for investigating subsurface conditions. Multiple attributes of the technology using various electrode configurations significantly reduce measurement time and are suitable for applications even in hardly accessible mountain areas. It is a noninvasive test for subsurface characterization and a very sensitive method used to determine geophysical properties, i.e., structural integrity, water content, fluid composition, etc. This paper aimed to elucidate the ERT technique’s main features and applications in geotechnical and geoenvironmental engineering through four case studies. The first case study investigated the possible flow paths and areas of moisture accumulation after leachate recirculation in a bioreactor landfill. The second case study attempted to determine the moisture variation along highway pavement. The third case study explored the slope failure investigation by ERT. The fourth case study demonstrated the efficiency of the ERT method in the landfill evapotranspiration (ET) cover to investigate moisture variation on a broader scale and performance monitoring. In all of the four cases, ERT exhibited promising performance.
Optimising the Use of Ultrasound in Gout: A Review from the Ground Up
Authors: Filippucci Emilio , Cipolletta Edoardo , Sirotti Silvia , Filippou Georgios
Published: April 2024

The use of ultrasonography (US) has considerable potential for the diagnosis and monitoring of gout due to its capacity to detect monosodium urate deposits. In the last decade, a critical amount of scientific data has become available. Consensus-based definitions for ultrasonographic elementary lesions in gout have been developed, tested, and validated, as well as a semiquantitative scoring system for their quantification. Many scanning protocols have been proposed in different clinical scenarios. In this review, we formulate a set of practical suggestions for the use of the US in daily practice. We discuss the current knowledge to indicate which joints and structures are to be scanned and which elementary findings are to be evaluated according to the clinical scenario. While for some clinical settings, a quite definite scanning protocol can be indicated, others still need to be further investigated, and how to obtain the best out of the US is still entrusted to the individual experience.
Exploring Physical Activity Levels in Patients with Cardiovascular Disease—A Preliminary Study
Authors: Kakita Saori , Watanabe Takatomo , Yamagishi Junya , Tanaka Chiaki , Watanabe Daichi , Okura Hiroyuki
Published: April 2024

Increased physical activity may prevent disease onset and severity in individuals with cardiovascular disease. However, studies evaluating physical activity in people with cardiovascular disease are limited. This prospective observational study aimed to objectively assess the level of physical activity in patients with cardiovascular disease and determine the actual extent of physical activity in their daily lives. Participants aged 20 years or older with cardiovascular disease at a cardiology clinic were included. Physical activity was measured using an activity meter with a three-axis acceleration sensor. Overall, 58 patients were included in the study. Household activities were found to be more frequent sources of physical activity. The step count was related to age and housework, while total physical activity and household activity were related to age and work. Locomotive activity was related to sex and housework. Total physical and household activities tended to decrease with age. These findings indicate the influence of work and household chores on physical activity and suggest that physical activity may be underestimated if household activity is not also assessed. These fundamental findings may provide clinical evidence to underpin physical activity for patients with cardiovascular disease.
FTO rs9939609: T>A Variant and Physical Inactivity as Important Risk Factors for Class III Obesity: A Cross-Sectional Study
Authors: Martínez-López Erika , Perez-Robles Mariana , Torres-Vanegas Joel , Godinez-Mora Sissi , Llamas-Covarrubias Iris Monserrat , Campos-Perez Wendy
Published: April 2024

Background: The prevalence of obesity has been increasing worldwide. It has been reported that physiological and environmental factors such as diet, culture, physical activity, and genetics are the principal factors related to obesity. The fat mass and obesity-associated (FTO) gen variant (rs9939609: T>A) has been associated with class III obesity. The A variant has been correlated with anthropometric and metabolic alterations. Therefore, the purpose of this study was to analyze the association of the FTO rs9939609: T>A variant and environmental factors with clinical, anthropometric, and biochemical variables in subjects with class III obesity. Results: The A variant frequency was higher in the class III obesity group compared with the normal weight group (44% vs. 25%, p < 0.001). Subjects with the AA genotype had a higher body mass index (BMI) than those with the AT genotype (35.46 kg/m2 (31–39.8) vs. 26.91 kg/m2 (23.7–30), p = 0.005). Women with the AA genotype showed higher waist circumferences than the AT group (101.07 cm (90.9–111.1) vs. 85.45 cm (77–93.8) p = 0.047). The FTO A variant increases the risk by 3.54 times and physical inactivity increases the risk by 6.37 times for class III obesity. Conclusions: Our results suggest that among the studied variables, those most related to class III obesity were the FTO risk genotype (A allele) and physical inactivity.
Genomic Insight into a Potential Biological Control Agent for Fusarium-Related Diseases in Potatoes: Bacillus cabrialesii Subsp. cabrialesii Strain PE1
Authors: Valenzuela-Aragon Brenda , Montoya-Martínez Amelia C. , Parra-Cota Fannie Isela , de los Santos-Villalobos Sergio
Published: April 2024

Bacillus strain PE1, which was isolated from potatoes harvested in the Yaqui Valley, Mexico, was evaluated as a potential biological control agent against Fusarium languescens. The draft genome sequence was obtained through Illumina NovaSeq sequencing, revealing a genomic size of 4,071,293 bp, with a G + C content of 44.13%, an N50 value of 357,305 bp, and 27 contigs. The taxonomic affiliation was confirmed by analyzing the 16S rRNA gene and overall genome relatedness indices (OGRIs) and constructing a phylogenomic tree based on the whole genome, which showed a close relationship to Bacillus cabrialesii subsp. cabrialesii. Genomic annotation using RAST and Prokka identified 4261 coding DNA sequences (CDSs) distributed across 331 subsystems, highlighting genes associated with biocontrol, stress response, and iron acquisition. AntiSMASH 7.1 was used for genome mining, revealing seven biosynthetic gene clusters that potentially produce biocontrol-related metabolites. In vitro assays confirmed the antagonistic activity of strain PE1 against Fusarium languescens CE2, demonstrating its potential to inhibit mycelial growth. The study provides a genomic basis for investigating B. cabrialesii subsp. cabrialesii PE1 as a potential biological control agent in potato production.
A Dynamic Model of Opioid Overdose Deaths in Canada during the Co-Occurring Opioid Overdose Crisis and COVID-19 Pandemic
Authors: Zahan Rifat , Osgood Nathaniel D. , Plouffe Rebecca , Orpana Heather
Published: April 2024

With over 40,000 opioid-related overdose deaths between January 2016 and June 2023, the opioid-overdose crisis is a significant public health concern for Canada. The opioid crisis arose from a complex system involving prescription opioid use, the use of prescription opioids not as prescribed, and non-medical opioid use. The increasing presence of fentanyl and its analogues in the illegal drugs supply has been an important driver of the crisis. In response to the overdose crisis, governments at the municipal, provincial/territorial, and federal levels have increased actions to address opioid-related harms. At the onset of the COVID-19 pandemic, concerns emerged over how the pandemic context may impact the opioid overdose crisis. Using evidence from a number of sources, we developed a dynamic mathematical model of opioid overdose death to simulate possible trajectories of overdose deaths during the COVID-19 pandemic. This model incorporates information on prescription opioid use, opioid use not as prescribed, non-medical opioid use, the level of fentanyl in the drug supply, and a measure of the proportion deaths preventable by new interventions. The simulated scenarios provided decision makers with insight into possible trajectories of the opioid crisis in Canada during the COVID-19 pandemic, highlighting the potential of the crisis to take a turn for the worse under certain assumptions, and thus, informing planning during a period when surveillance data were not yet available. This model provides a starting point for future models, and through its development, we have identified important data and evidence gaps that need to be filled in order to inform future action.
Transcriptome Analysis of Tomato Leaves Reveals Candidate Genes Responsive to Tomato Brown Rugose Fruit Virus Infection
Authors: Wang Donghai , Chen Mangle , Peng Jiejun , Zheng Hongying , Lu Yuwen , Wu Guanwei , Wu Jian , Li Junmin , Chen Jianping , Yan Fei , Rao Shaofei
Published: April 2024

Tomato brown rugose fruit virus (ToBRFV) is a newly-emerging tobamovirus which was first reported on tomatoes in Israel and Jordan, and which has now spread rapidly in Asia, Europe, North America, and Africa. ToBRFV can overcome the resistance to other tobamoviruses conferred by tomato Tm-1, Tm-2, and Tm-22 genes, and it has seriously affected global crop production. The rapid and comprehensive transcription reprogramming of host plant cells is the key to resisting virus attack, but there have been no studies of the transcriptome changes induced by ToBRFV in tomatoes. Here, we made a comparative transcriptome analysis between tomato leaves infected with ToBRFV for 21 days and those mock-inoculated as controls. A total of 522 differentially expressed genes were identified after ToBRFV infection, of which 270 were up-regulated and 252 were down-regulated. Functional analysis showed that DEGs were involved in biological processes such as response to wounding, response to stress, protein folding, and defense response. Ten DEGs were selected and verified by qRT-PCR, confirming the reliability of the high-throughput sequencing data. These results provide candidate genes or signal pathways for the response of tomato leaves to ToBRFV infection.
Modeling Dynamics of Human Gut Microbiota Derived from Gluten Metabolism: Obtention, Maintenance and Characterization of Complex Microbial Communities
Authors: Carnicero-Mayo Yaiza , Sáenz de Miera Luis E. , Ferrero Miguel Ángel , Navasa Nicolás , Casqueiro Javier
Published: April 2024

Western diets are rich in gluten-containing products, which are frequently poorly digested. The human large intestine harbors microorganisms able to metabolize undigested gluten fragments that have escaped digestion by human enzymatic activities. The aim of this work was obtaining and culturing complex human gut microbial communities derived from gluten metabolism to model the dynamics of healthy human large intestine microbiota associated with different gluten forms. For this purpose, stool samples from six healthy volunteers were inoculated in media containing predigested gluten or predigested gluten plus non-digested gluten. Passages were carried out every 24 h for 15 days in the same medium and community composition along time was studied via V3–V4 16S rDNA sequencing. Diverse microbial communities were successfully obtained. Moreover, communities were shown to be maintained in culture with stable composition for 14 days. Under non-digested gluten presence, communities were enriched in members of Bacillota, such as Lachnospiraceae, Clostridiaceae, Streptococcaceae, Peptoniphilaceae, Selenomonadaceae or Erysipelotrichaceae, and members of Actinomycetota, such as Bifidobacteriaceae and Eggerthellaceae. Contrarily, communities exposed to digested gluten were enriched in Pseudomonadota. Hence, this study shows a method for culture and stable maintenance of gut communities derived from gluten metabolism. This method enables the analysis of microbial metabolism of gluten in the gut from a community perspective.
Special Issue “Development and Synthesis of Biologically Active Compounds”
Authors: Gazieva Galina A. , Chegaev Konstantin
Published: April 2024

The intention of this Special Issue is to focus on new achievements in the design, preparation, and in vitro and in vivo biological evaluation of bioactive molecules that can result in the development of natural or artificial potent compounds looking for promising pharmaceuticals and agrochemicals [...]
Molecular Characteristics of JAK2 and Its Effect on the Milk Fat and Casein Synthesis of Ovine Mammary Epithelial Cells
Authors: Liu Yuan , Zhen Huimin , Wu Xinmiao , Wang Jiqing , Luo Yuzhu , Hu Jiang , Liu Xiu , Li Shaobin , Li Mingna , Shi Bingang , Ren Chunyan , Gu Yuanhua , Hao Zhiyun
Published: April 2024

In addition to its association with milk protein synthesis via the Janus kinase-signal transducer and activator of transcription (JAK-STAT) pathway, JAK2 also affects milk fat synthesis. However, to date, there have been no reports on the effect of JAK2 on ovine mammary epithelial cells (OMECs), which directly determine milk yield and milk contents. In this study, the coding sequence (CDS) region of ovine JAK2 was cloned and identified and its tissue expression and localization in ovine mammary glands, as well as its effects on the viability, proliferation, and milk fat and casein levels of OMECs, were also investigated. The CDS region of ovine JAK2, 3399 bp in length, was cloned and its authenticity was validated by analyzing its sequence similarity with JAK2 sequences from other animal species using a phylogenetic tree. JAK2 was found to be expressed in six ovine tissues, with the highest expression being in the mammary gland. Over-expressed JAK2 and three groups of JAK2 interference sequences were successfully transfected into OMECs identified by immunofluorescence staining. When compared with the negative control (NC) group, the viability of OMECs was increased by 90.1% in the pcDNA3.1-JAK2 group. The over-expression of JAK2 also increased the number and ratio of EdU-labeled positive OMECs, as well as the expression levels of three cell proliferation marker genes. These findings show that JAK2 promotes the viability and proliferation of OMECs. Meanwhile, the triglyceride content in the over-expressed JAK2 group was 2.9-fold higher than the controls and the expression levels of four milk fat synthesis marker genes were also increased. These results indicate that JAK2 promotes milk fat synthesis. Over-expressed JAK2 significantly up-regulated the expression levels of casein alpha s2 (CSN1S2), casein beta (CSN2), and casein kappa (CSN3) but down-regulated casein alpha s1 (CSN1S1) expression. In contrast, small interfered JAK2 had the opposite effect to JAK2 over-expression on the viability, proliferation, and milk fat and milk protein synthesis of OMECs. In summary, these results demonstrate that JAK2 promotes the viability, proliferation, and milk fat synthesis of OMECs in addition to regulating casein expression in these cells. This study contributes to a better comprehension of the role of JAK2 in the lactation performance of sheep.
Prevalence of Selected Polymorphisms of Il7R, CD226, CAPSL, and CLEC16A Genes in Children and Adolescents with Autoimmune Thyroid Diseases
Authors: Borysewicz-Sańczyk Hanna , Wawrusiewicz-Kurylonek Natalia , Gościk Joanna , Sawicka Beata , Bossowski Filip , Corica Domenico , Aversa Tommaso , Waśniewska Małgorzata , Bossowski Artur
Published: April 2024

Hashimoto’s thyroiditis (HT) and Graves’ disease (GD) are common autoimmune endocrine disorders in children. Studies indicate that apart from environmental factors, genetic background significantly contributes to the development of these diseases. This study aimed to assess the prevalence of selected single-nucleotide polymorphisms (SNPs) of Il7R, CD226, CAPSL, and CLEC16A genes in children with autoimmune thyroid diseases. We analyzed SNPs at the locus rs3194051, rs6897932 of IL7R, rs763361 of CD226, rs1010601 of CAPSL, and rs725613 of CLEC16A gene in 56 HT patients, 124 GD patients, and 156 healthy children. We observed significant differences in alleles IL7R (rs6897932) between HT males and the control group (C > T, p = 0.028) and between all GD patients and healthy children (C > T, p = 0.035) as well as GD females and controls (C > T, p = 0.018). Moreover, the C/T genotype was less frequent in GD patients at rs6897932 locus and in HT males at rs1010601 locus. The presence of the T allele in the IL7R (rs6897932) locus appears to have a protective effect against HT in males and GD in all children. Similarly, the presence of the T allele in the CAPSL locus (rs1010601) seems to reduce the risk of HT development in all patients.
Neutrophils and Anesthetic Drugs: Implications in Onco-Anesthesia
Authors: Alexa Alexandru Leonard , Sargarovschi Sergiu , Ionescu Daniela
Published: April 2024

Apart from being a significant line of defense in the host defense system, neutrophils have many immunological functions. Although there are not many publications that accurately present the functions of neutrophils in relation to oncological pathology, their activity and implications have been studied a lot recently. This review aims to extensively describe neutrophils functions’; their clinical implications, especially in tumor pathology; the value of clinical markers related to neutrophils; and the implications of neutrophils in onco-anesthesia. This review also aims to describe current evidence on the influence of anesthetic drugs on neutrophils’ functions and their potential influence on perioperative outcomes.
Clustering-Based Joint Topic-Sentiment Modeling of Social Media Data: A Neural Networks Approach
Authors: Hanny David , Resch Bernd
Published: April 2024

With the vast amount of social media posts available online, topic modeling and sentiment analysis have become central methods to better understand and analyze online behavior and opinion. However, semantic and sentiment analysis have rarely been combined for joint topic-sentiment modeling which yields semantic topics associated with sentiments. Recent breakthroughs in natural language processing have also not been leveraged for joint topic-sentiment modeling so far. Inspired by these advancements, this paper presents a novel framework for joint topic-sentiment modeling of short texts based on pre-trained language models and a clustering approach. The method leverages techniques from dimensionality reduction and clustering for which multiple algorithms were considered. All configurations were experimentally compared against existing joint topic-sentiment models and an independent sequential baseline. Our framework produced clusters with semantic topic quality scores of up to 0.23 while the best score among the previous approaches was 0.12. The sentiment classification accuracy increased from 0.35 to 0.72 and the uniformity of sentiments within the clusters reached up to 0.9 in contrast to the baseline of 0.56. The presented approach can benefit various research areas such as disaster management where sentiments associated with topics can provide practical useful information.
From Typing to Talking: Unveiling AI’s Role in the Evolution of Voice Assistant Integration in Online Shopping
Authors: Calahorra-Candao Guillermo , Martín-de Hoyos María José
Published: April 2024

This study develops a theoretical framework integrating the Technology Acceptance Model (TAM) and Uses and Gratifications Theory (UGT) to predict and understand the acceptance of voice shopping intentions, particularly through AI-driven voice assistants. This research delves into the dual aspects of AI voice shopping platforms: the functional attributes outlined by the TAM and personal gratifications highlighted by the UGT, such as enjoyment, performance expectancy, and perceived safety. It uncovers a favorable user attitude towards voice shopping, emphasizing the significant role of performance expectancy and perceived utility on behavioral intentions. Key insights include the critical importance of security and privacy for user trust and the acceptance of new AI technologies, and the necessity of a balanced approach that merges functional, emotional, and security aspects for successful AI integration in daily technology use. Contrary to expectations, this study reveals a weak relationship between social norms and perceived usefulness, suggesting a misalignment with societal expectations. This research enriches the understanding of voice shopping using virtual assistants, offering valuable insights into consumer behavior and AI technology acceptance. It highlights practical implications for AI research, the development of voice-based software, and AI-driven advertising strategies, emphasizing the communication of benefits and emotional resonance in voice-enabled AI assistants for consumer purchases.
Ngāokeoke Aotearoa: The Peripatoides Onychophora of New Zealand
Authors: Trewick Steven A. , Koot Emily M. , Morgan-Richards Mary
Published: April 2024

(1) Background: Originally described as a single taxon, Peripatoides novaezealandiae (Hutton, 1876) are distributed across both main islands of New Zealand; the existence of multiple distinct lineages of live-bearing Onychophora across this spatial range has gradually emerged. Morphological conservatism obscured the true endemic diversity, and the inclusion of molecular tools has been instrumental in revealing these cryptic taxa. (2) Methods: Here, we review the diversity of the ovoviviparous Onychophora of New Zealand through a re-analysis of allozyme genotype data, mitochondrial DNA cytochrome oxidase subunit I sequences, geographic information and morphology. (3) Results: New analysis of the multilocus biallelic nuclear data using methods that do not require a priori assumptions of population assignment support at least six lineages of ovoviviparous Peripatoides in northern New Zealand, and mtDNA sequence variation is consistent with these divisions. Expansion of mitochondrial DNA sequence data, including representation of all existing taxa and additional populations extends our knowledge of the scale of sympatry among taxa and shows that three other lineages from southern South Island can be added to the Peripatoides list, and names are proposed here. In total, 10 species of Peripatoides can be recognised with current data.
GIS-Based Tool for Pest Specific Area-Wide Planning of Crop Rotation Distance with Land Use Data
Authors: Schieler Manuela , Riemer Natalia , Racca Paolo , Kleinhenz Benno , Saucke Helmut , Veith Michael , Meese Bernd
Published: April 2024

Crop rotation is an important strategy for pest reduction. For mono-, or oligophagous pests that overwinter at a previously infested site, crop rotation means that the pests must find new host crop sites in the following year, and it is more efficient if a pest-specific distance is applied. Here, we report the development of a GIS-based tool for efficient cultivation planning using the example of the pest complex pea moth (Cydia nigricana) and grain and green peas (Pisum sativum). Monitoring data for four consecutive years (2016–2019) from 513 sites were used. Infestation of pea seeds and the distance to the previous year’s pea sites were recorded. An adjustable Python script was developed by means of infestation–distance–correlation as a pest and crop-specific minimum migration distance (MD). The output of the tool is a risk map as decision support for cultivation planning. It shows different risk buffers with distances from 1261 m to 1825 m, depending on the cultivation type. The web tool is easily adjustable to other pests and crops anywhere in the world. The tool helps to prevent damages caused by agricultural, mono-, or oligophagous insect pests and consequently reduces pesticide applications for the benefit of the environment and biodiversity.
The Clinical Impact of SARS-CoV-2 on Hypertrophic Cardiomyopathy
Authors: Saleh Danish , Meng Zhiying , Johnson Nicholas , Baldridge Abigail , Zielinski Allison R. , Choudhury Lubna
Published: April 2024

Background: This study aims to understand and describe the clinical impact of SARS-CoV-2 (COVID-19) infection in patients with Hypertrophic Cardiomyopathy (HCM). Methods: A data repository of over 6.6 million patients in a large metropolitan (Chicago IL) healthcare system was queried to identify adults with a history of HCM and COVID-19 infection between 2019 and 2021. Propensity score-matched analysis was performed based on age, sex, BMI, and elements of the cardiovascular history, including tobacco use, hypertension, hyperlipidemia, myocardial injury, and heart failure. Results: Individuals with HCM and COVID-19 infection had more total hospitalizations (41.6 v 23 per 100 persons, p < 0.01), more heart-failure-related hospitalizations (24.2 v 8.7 per 100-persons, p < 0.01), more non-ST elevation myocardial injury (NSTEMI) hospitalizations (8.6 v 4.6 per 100-persons, p < 0.01), and increased mortality (10.8 v 5 per 100-persons, p < 0.01) compared to HCM patients without a history of COVID-19 infection. Patients with HCM and COVID-19 were also noted to have a higher peak CRP when compared to those without prior COVID-19 (Inter-quartile range of 9.0–106.9 v 1.8–21.3, p < 0.01). Conclusions: In patients with HCM, COVID-19 infection is associated with increased incidence of myocardial injury, increased number of total and heart-failure specific hospitalizations, and increased mortality.
Practice Guidelines for Monitoring Neuromuscular Blockade—Elements to Change to Increase the Quality of Anesthesiological Procedures and How to Improve the Acceleromyographic Method
Authors: Kosciuczuk Urszula , Dardzinska Agnieszka , Kasperczuk Anna , Dzienis Paweł , Tomaszuk Adam , Tarnowska Katarzyna , Rynkiewicz-Szczepanska Ewa , Kossakowska Agnieszka , Pryzmont Marta
Published: April 2024

Neuromuscular blocking agents are a crucial pharmacological element of general anesthesia. Decades of observations and scientific studies have resulted in the identification of many risks associated with the uncontrolled use of neuromuscular blocking agents during general anesthesia or an incomplete reversal of neuromuscular blockade in the postoperative period. Residual relaxation and acute postoperative respiratory depression are the most serious consequences. Cyclic recommendations have been developed by anesthesiology societies from many European countries as well as from the United States and New Zealand. The newest recommendations from the American Society of Anesthesiologists and the European Society of Anesthesiology were published in 2023. These publications contain very detailed recommendations for monitoring the dosage of skeletal muscle relaxants in the different stages of anesthesia—induction, maintenance and recovery, and the postoperative period. Additionally, there are recommendations for various special situations (for example, rapid sequence induction) and patient populations (for example, those with organ failure, obesity, etc.). The guidelines also refer to pharmacological drugs for reversing the neuromuscular transmission blockade. Despite the development of several editions of recommendations for monitoring neuromuscular blockade, observational and survey data indicate that their practical implementation is very limited. The aim of this review was to present the professional, technical, and technological factors that limit the implementation of these recommendations in order to improve the implementation of the guidelines and increase the quality of anesthesiological procedures and perioperative safety.
PRESERFLO™ Microshunt: 1-Year Results of a 25-Gauge vs. 27-Gauge Needle Tract
Authors: Steiner Stefan , Resch Hemma , Kiss Barbara , Vass Clemens
Published: April 2024

Background: The purpose of this study was to evaluate the effectiveness and safety of the PreserFlo™ microshunt (PMS) using a 25-Gauge vs. 27-Gauge needle tract. Methods: This is a prospective postoperative examination of 60 glaucoma eyes that received a PMS. The main outcome measures were intraocular pressure (IOP), glaucoma drug score (GDS), Kaplan–Meier success rates, complications, and secondary intervention rates. Two subgroups were formed for data comparison: 27-Gauge (27G), and 25-Gauge (25G). Success was defined as IOP < 18 mmHg together with ≥20% IOP reduction with medication allowed (qualified success = QS18) or not (full success = FS18). Results: IOP and GDS were reduced from baseline to the 1-year study visit as follows: All eyes from 23.4 ± 8.6 mmHg (3.1 ± 0.9) to 15.1 ± 5.9 mmHg (0.8 ± 1.1); 25G from 24.2 ± 7.3 mmHg (3.0 ± 0.8) to 12.7 ± 2.7 mmHg (0.5 ± 0.8); and 27G from 23.1 ± 9.2 mmHg (3.1 ± 1.0) to 16.2 ± 6.7 mmHg (0.9 ± 1.2). IOP at one year was lower in the 25G group compared to the 27G group (p = 0.035). Bleb needling was required in eight (13.3%) eyes and open bleb revisions in three (5.0%). Transient hypotony occurred in 21% and choroidal effusion in 8% of all eyes. Choroidal effusions were more frequent in the 25G group (21%) compared to the 27G group (2%, p = 0.031). One-year success rates were significantly higher in the 25G group compared to the 27G group for both QS18 (25G: 67.9% vs. 27G: 35.7%, p = 0.002) and FS18 (25G: 63.6% vs. 27G: 29.2%, p = 0.007). Conclusions: The PreserFlo microshunt is an effective and safe glaucoma surgery with a low rate of bleb revisions or needlings. We show that the 25G needle tract might be more efficient for IOP control at the cost of increased IOP-related complications compared to 27G.