bluuebunny/crossref_metadata_2025 huggingface dataset:
Single-Cell and Bulk RNA-Sequencing Reveal Differences in Monocyte Susceptibility to Influenza A Virus Infection Between Africans and Europeans
Authors: O’Neill Mary B. , Quach Hélène , Pothlichet Julien , Aquino Yann , Bisiaux Aurélie , Zidane Nora , Deschamps Matthieu , Libri Valentina , Hasan Milena , Zhang Shen-Ying , Zhang Qian , Matuozzo Daniela , Cobat Aurélie , Abel Laurent , Casanova Jean-Laurent , Naffakh Nadia , Rotival Maxime , Quintana-Murci Lluis
Published: December 2021

There is considerable inter-individual and inter-population variability in response to viruses. The potential of monocytes to elicit type-I interferon responses has attracted attention to their role in viral infections. Here, we use single-cell RNA-sequencing to characterize the role of cellular heterogeneity in human variation of monocyte responses to influenza A virus (IAV) exposure. We show widespread inter-individual variability in the percentage of IAV-infected monocytes. Notably, individuals with high cellular susceptibility to IAV are characterized by a lower activation at basal state of an IRF/STAT-induced transcriptional network, which includes antiviral genes such as IFITM3, MX1 and OAS3. Upon IAV challenge, we find that cells escaping viral infection display increased mRNA expression of type-I interferon stimulated genes and decreased expression of ribosomal genes, relative to both infected cells and those never exposed to IAV. We also uncover a stronger resistance of CD16+ monocytes to IAV infection, together with CD16+-specific mRNA expression of IL6 and TNF in response to IAV. Finally, using flow cytometry and bulk RNA-sequencing across 200 individuals of African and European ancestry, we observe a higher number of CD16+ monocytes and lower susceptibility to IAV infection among monocytes from individuals of African-descent. Based on these data, we hypothesize that higher basal monocyte activation, driven by environmental factors and/or weak-effect genetic variants, underlies the lower cellular susceptibility to IAV infection of individuals of African ancestry relative to those of European ancestry. Further studies are now required to investigate how such cellular differences in IAV susceptibility translate into population differences in clinical outcomes and susceptibility to severe influenza.
The Second Study of Clinical and Immunological Findings in Anti-laminin 332-Type Mucous Membrane Pemphigoid Examined at Kurume University—Diagnosis Criteria Suggested by Summary of 133 Cases
Authors: Qian Hua , Natsuaki Yohei , Koga Hiroshi , Kawakami Tamihiro , Tateishi Chiharu , Tsuruta Daisuke , Ishii Norito , Li Xiaoguang , Hashimoto Takashi
Published: December 2021

Background

Recently, we published an article retrospectively summarizing the results in 55 anti-laminin 332 (LM332)-type mucous membrane pemphigoid (MMP) cases examined at Kurume University, which were diagnosed by strict inclusion criteria, including positive reactivity in direct immunofluorescence and absence of antibodies to non-LM332 autoantigens. However, indirect immunofluorescence using 1M-NaCl-split normal human skin (ssIIF) is also valuable for diagnosis of anti-LM332-type MMP.

Methods

In this second study, we selected 133 anti-LM332-type MMP cases, which were diagnosed by our different inclusion criteria: (i) immunoglobulin G (IgG) deposition to basement membrane zone (BMZ) by direct immunofluorescence or IgG reactivity with dermal side of split skin by ssIIF, (ii) positivity for at least one of the three subunits of LM332 by immunoblotting of purified human LM332, and (iii) the presence of mucosal lesions. Clinical, histopathological, and immunological findings were summarized and analyzed statistically. Although these cases included the 55 previous cases, the more detailed study for larger scale of patients was conducted for further characterization.

Results

Clinically, among the 133 patients, 89% and 43% patients had oral and ocular mucosal lesions, respectively, 71% had cutaneous lesions, and 17% had associated malignancies. Histopathologically, 93% patients showed subepidermal blisters. The sensitivities of ssIIF and direct immunofluorescence are similar but are significantly higher than indirect immunofluorescence using non-split human skin (both p < 0.001). In immunoblotting of purified LM332, patient IgG antibodies most frequently reacted with LMγ2 subunit (58%), followed by LMα3 (49%) and LMβ3 (36%). Thirty-four percent patients recognized additional non-LM332 autoantigens. Statistical analysis revealed that autoantibodies against non-LM332 autoantigens might stimulate the production of anti-LMγ2 antibodies.

Conclusions

This retrospective study further characterized in more detail the clinical and immunological features of 133 cases of anti-LM332-type MMP, in which the new diagnostic criteria without positive direct immunofluorescence reactivity were useful for the diagnosis. Higher frequency with anti-LMγ2 antibodies suggested more significant pathogenic role of this subunit. Additional autoantibodies to non-LM332 autoantigens detected in one-third of the patients may contribute to complexity in anti-LM332-type MMP, including the induction of anti-LMγ2 antibodies.
Two Duplicated Ptpn6 Homeologs Cooperatively and Negatively Regulate RLR-Mediated IFN Response in Hexaploid Gibel Carp
Authors: Tong Jin-Feng , Zhou Li , Li Shun , Lu Long-Feng , Li Zhuo-Cong , Li Zhi , Gan Rui-Hai , Mou Cheng-Yan , Zhang Qi-Ya , Wang Zhong-Wei , Zhang Xiao-Juan , Wang Yang , Gui Jian-Fang
Published: December 2021

Src homology region 2 domain-containing phosphatase 1 (SHP1), encoded by the protein tyrosine phosphatase nonreceptor type 6 (ptpn6) gene, belongs to the family of protein tyrosine phosphatases (PTPs) and participates in multiple signaling pathways of immune cells. However, the mechanism of SHP1 in regulating fish immunity is largely unknown. In this study, we first identified two gibel carp (Carassius gibelio) ptpn6 homeologs (Cgptpn6-A and Cgptpn6-B), each of which had three alleles with high identities. Then, relative to Cgptpn6-B, dominant expression in adult tissues and higher upregulated expression of Cgptpn6-A induced by polyinosinic-polycytidylic acid (poly I:C), poly deoxyadenylic-deoxythymidylic (dA:dT) acid and spring viremia of carp virus (SVCV) were uncovered. Finally, we demonstrated that CgSHP1-A (encoded by the Cgptpn6-A gene) and CgSHP1-B (encoded by the Cgptpn6-B gene) act as negative regulators of the RIG-I-like receptor (RLR)-mediated interferon (IFN) response via two mechanisms: the inhibition of CaTBK1-induced phosphorylation of CaMITA shared by CgSHP1-A and CgSHP1-B, and the autophagic degradation of CaMITA exclusively by CgSHP1-A. Meanwhile, the data support that CgSHP1-A and CgSHP1-B have sub-functionalized and that CgSHP1-A overwhelmingly dominates CgSHP1-B in the process of RLR-mediated IFN response. The current study not only sheds light on the regulative mechanism of SHP1 in fish immunity, but also provides a typical case of duplicated gene evolutionary fates.
Attenuated Negative Feedback in Monocyte-Derived Macrophages From Persons Living With HIV: A Role for IKAROS
Authors: Faia Celeste , Plaisance-Bonstaff Karlie , Vittori Cecilia , Wyczechowska Dorota , Lassak Adam , Meyaski-Schluter Mary , Reiss Krzysztof , Peruzzi Francesca
Published: December 2021

Persons living with HIV (PLWH) are at higher risk of developing secondary illnesses than their uninfected counterparts, suggestive of a dysfunctional immune system in these individuals. Upon exposure to pathogens, monocytes undergo epigenetic remodeling that results in either a trained or a tolerant phenotype, characterized by hyper-responsiveness or hypo-responsiveness to secondary stimuli, respectively. We utilized CD14+ monocytes from virally suppressed PLWH and healthy controls for in vitro analysis following polarization of these cells toward a pro-inflammatory monocyte-derived macrophage (MDM) phenotype. We found that in PLWH-derived MDMs, pro-inflammatory signals (TNFA, IL6, IL1B, miR-155-5p, and IDO1) dominate over negative feedback signals (NCOR2, GSN, MSC, BIN1, and miR-146a-5p), favoring an abnormally trained phenotype. The mechanism of this reduction in negative feedback involves the attenuated expression of IKZF1, a transcription factor required for de novo synthesis of RELA during LPS-induced inflammatory responses. Furthermore, restoring IKZF1 expression in PLWH-MDMs partially reinstated expression of negative regulators of inflammation and lowered the expression of pro-inflammatory cytokines. Overall, this mechanism may provide a link between dysfunctional immune responses and susceptibility to co-morbidities in PLWH with low or undetectable viral load.
Endothelial Dysfunction in Fabry Disease Is Related to Glycocalyx Degradation
Authors: Pollmann Solvey , Scharnetzki David , Manikowski Dominique , Lenders Malte , Brand Eva
Published: December 2021

Fabry disease (FD) is an X-linked multisystemic lysosomal storage disease due to a deficiency of α-galactosidase A (GLA/AGAL). Progressive cellular accumulation of the AGAL substrate globotriaosylceramide (Gb3) leads to endothelial dysfunction. Here, we analyzed endothelial function in vivo and in vitro in an AGAL-deficient genetic background to identify the processes underlying this small vessel disease. Arterial stiffness and endothelial function was prospectively measured in five males carrying GLA variants (control) and 22 FD patients under therapy. AGAL-deficient endothelial cells (EA.hy926) and monocytes (THP1) were used to analyze endothelial glycocalyx structure, function, and underlying inflammatory signals. Glycocalyx thickness and small vessel function improved significantly over time (p<0.05) in patients treated with enzyme replacement therapy (ERT, n=16) and chaperones (n=6). AGAL-deficient endothelial cells showed reduced glycocalyx and increased monocyte adhesion (p<0.05). In addition, increased expression of angiopoietin-2, heparanase and NF-κB was detected (all p<0.05). Incubation of wild-type endothelial cells with pathological globotriaosylsphingosine concentrations resulted in comparable findings. Treatment of AGAL-deficient cells with recombinant AGAL (p<0.01), heparin (p<0.01), anti-inflammatory (p<0.001) and antioxidant drugs (p<0.05), and a specific inhibitor (razuprotafib) of angiopoietin-1 receptor (Tie2) (p<0.05) improved glycocalyx structure and endothelial function in vitro. We conclude that chronic inflammation, including the release of heparanases, appears to be responsible for the degradation of the endothelial glycocalyx and may explain the endothelial dysfunction in FD. This process is partially reversible by FD-specific and anti-inflammatory treatment, such as targeted protective Tie2 treatment.
Dl-3-n-Butylphthalide Rescues Dopaminergic Neurons in Parkinson’s Disease Models by Inhibiting the NLRP3 Inflammasome and Ameliorating Mitochondrial Impairment
Authors: Que Rongfang , Zheng Jialing , Chang Zihan , Zhang Wenjie , Li Hualing , Xie Zhenchao , Huang Zifeng , Wang Hai-Tao , Xu Jiangping , Jin Dana , Yang Wanlin , Tan Eng-King , Wang Qing
Published: December 2021

Background

Neuroinflammation and mitochondrial impairment play important roles in the neuropathogenesis of Parkinson’s disease (PD). The activation of NLRP3 inflammasome and the accumulation of α-synuclein (α-Syn) are strictly correlated to neuroinflammation. Therefore, the regulation of NLRP3 inflammasome activation and α-Syn aggregation might have therapeutic potential. It has been indicated that Dl-3-n-butylphthalide (NBP) produces neuroprotection against some neurological diseases such as ischemic stroke. We here intended to explore whether NBP suppressed NLRP3 inflammasome activation and reduced α-Syn aggregation, thus protecting dopaminergic neurons against neuroinflammation.

Methods

In our study, we established a MPTP-induced mouse model and 6-OHDA-induced SH-SY5Y cell model to examine the neuroprotective actions of NBP. We then performed behavioral tests to examine motor dysfunction in MPTP-exposed mice after NBP treatment. Western blotting, immunofluorescence staining, flow cytometry and RT-qPCR were conducted to investigate the expression of NLRP3 inflammasomes, neuroinflammatory cytokines, PARP1, p-α-Syn, and markers of microgliosis and astrogliosis.

Results

The results showed that NBP exerts a neuroprotective effect on experimental PD models. In vivo, NBP ameliorated behavioral impairments and reduced dopaminergic neuron loss in MPTP-induced mice. In vitro, treatment of SH-SY5Y cells with 6-OHDA (100uM,24 h) significantly decreased cell viability, increased intracellular ROS production, and induced apoptosis, while pretreatment with 5uM NBP could alleviated 6-OHDA-induced cytotoxicity, ROS production and cell apoptosis to some extent. Importantly, both in vivo and in vitro, NBP suppressed the activation of the NLRP3 inflammasome and the aggregation of α-Syn, thus inhibited neuroinflammation ameliorated mitochondrial impairments.

Conclusions

In summary, NBP rescued dopaminergic neurons by reducing NLRP3 inflammasome activation and ameliorating mitochondrial impairments and increases in p-α-Syn levels. This current study may provide novel neuroprotective mechanisms of NBP as a potential therapeutic agent.
Perspective: Opportunities and Scope for Expanded Deworming Programs for Soil-Transmitted Helminths in India
Authors: Aruldas Kumudha , Khera Ajay Kumar , Ajjampur Sitara Swarna Rao
Published: December 2021

The current deworming strategy for soil-transmitted helminthiases (STH) focuses on pre-school and school-aged children and women in the reproductive age to eliminate morbidity. However, mathematical modeling and meta-analysis show that STH could be eliminated if the entire population, including adults, were treated. The Government of India (GOI) has been deworming children through various maternal and child health programs and school health programs. One of the largest initiatives is the school-based biannual deworming program for children aged 1-19 years in the ‘National Deworming Day’ since 2015. Women of the reproductive age have the opportunity to get dewormed under the Anemia Free India program. Adult men and women have the opportunity to receive Albendazole in the lymphatic filariasis (LF) endemic districts. The gaps in deworming are women above the age of 49 and adult men above 19 years, living in non-LF endemic areas. Understanding gaps in deworming will help plan policy changes and program strategies for STH elimination in India, which has 21% of the global STH burden, as well as in other STH endemic countries.
Discerning the Management-Relevant Ecology and Distribution of Sea Pens (Cnidaria: Pennatulacea) in Norway and Beyond
Authors: Ross Rebecca E. , Gonzalez-Mirelis Genoveva , Lozano Pablo , Buhl-Mortensen Pål
Published: December 2021

Sea pens are considered to be of conservation relevance according to multiple international legislations and agreements. Consequently, any information about their ecology and distribution should be of use to management decision makers. This study aims to provide such information about six taxa of sea pen in Norwegian waters [Funiculina quadrangularis (Pallas, 1766), Halipteris spp., Kophobelemnon stelliferum (Müller, 1776), Pennatulidae spp., Umbellula spp., and Virgulariidae spp.]. Data exploration techniques and ensembled species distribution modelling (SDM) are applied to video observations obtained by the MAREANO project between 2006 and 2020. Norway-based ecological profiles and predicted distributions are provided and discussed. External validations and uncertainty metrics highlight model weaknesses (overfitting, limited training/external observations) and consistencies relevant to marine management. Comparison to international literature further identifies globally relevant findings: (a) disparities in the environmental profile of F. quadrangularis suggest differing “realised niches” in different locations, potentially highlighting this taxon as particularly vulnerable to impact, (b) none of the six sea pen taxa were found to consistently co-occur, instead partially overlapping environmental profiles suggests that grouping taxa as “sea pens and burrowing megafauna” should be done with caution post-analyses only, (c) higher taxonomic level groupings, while sometimes necessary due to identification issues, result in poorer quality predictive models and may mask the occurrence of rarer species. Community-based groupings are therefore preferable due to confirmed shared ecological niches while greater value should be placed on accurate species ID to support management efforts.
Spatial and Temporal Variability in the Occurrence and Abundance of European Hake Larvae, Merluccius merluccius, on the Galician Shelf (NE Atlantic)
Authors: García-Fernández Cristina , Suca Justin J. , Llopiz Joel K. , Álvarez Paula , Domínguez-Petit Rosario , Saborido-Rey Fran
Published: December 2021

The European hake (Merluccius merluccius) is represented as one of the most valuable fisheries in the Galician shelf. We analyzed the distribution, abundance, and environmental conditions of the southern-stock European hake larvae from the Galician shelf during the two main spawning peaks, winter-spring and summer, based on the data from three ichthyoplankton surveys (March 2012, March 2017, and June 2017). A total of 395 larvae in March 2012, 121 in March 2017, and 69 in June 2017 were captured. The northeast section of the study area, close to Estaca de Bares, primarily between 100 and 200 m isobaths, had the highest presence of the European hake larvae in all surveys. Generalized additive models (GAMs) indicated that the occurrence of larvae was significantly different between the surveys and was associated negatively with the temperature, while the abundance of larvae was significantly different between sampling years and was the highest at a temperature around 13.36°C and at sea surface heights of about −0.48 m. Studies of the distribution of early life stages and their relation to external conditions are essential to the understanding of the complex process of recruitment, especially in the exploited species and in highly dynamic environments like the Galician shelf.
Can Identifying Discrete Behavioral Groups With Individual-Based Acoustic Telemetry Advance the Understanding of Fish Distribution Patterns?
Authors: Taylor Ryland B. , Mather Martha E. , Smith Joseph M. , Boles Kayla M.
Published: December 2021

Identifying patterns of organismal distribution can provide valuable insights for basic and applied marine and coastal ecology because understanding where animals are located is foundational to both research and science-based conservation. Understanding variation in distributional patterns can lead to a better assessment of ecological drivers and an improved ability to predict consequences of natural and altered relationships. Here, our purpose is to explore if quantifying coexisting groups of individual fish predators advances our understanding of field distribution patterns. Toward this end, we quantified locations of 59 acoustically tagged striped bass (Morone saxatilis) within a 26-stationary unit telemetry receiver array in Plum Island Estuary (PIE), MA, United States. We then used cluster analyses on spatial and temporal-spatial metrics from this dataset to (1) assess if distinct groups of individuals coexisted, (2) quantify group characteristics, and (3) test associations between groups and distribution (e.g., physical site type and region). Based on multiple lines of evidence, we identified four groups of striped bass with different space use patterns that persisted across seasons (summer and fall). Similar-sized striped bass clustered at spatial and temporal scales at which individuals within distinct groups could, and did, physically overlap. In addition, distributional groups were linked to components of physical site type and region suggesting that discrete groups of individuals can interact differently with the environment within the same ecological system. The identification of these distinct groups of individuals creates a baseline from which to explore further ecological implications of grouping behavior for research and conservation in geographically large, temporally dynamic, and spatially heterogeneous marine and coastal environments.
A Bayesian Multilevel Ordinal Regression Model for Fish Maturity Data: Difference in Maturity Ogives of Skipjack Tuna (Katsuwonus pelamis) Between Schools in the Western and Central Pacific Ocean
Authors: Cao Jie , Wang Xuefang , Damiano Matthew D. , Zhou Cheng , Zhu Jiangfeng
Published: December 2021

The maturity ogive is vital to defining the fraction of a population capable of reproduction. In this study, we proposed a novel approach, a Bayesian multilevel ordinal regression (i.e., Bayesian continuation ratio model), to model the maturity ogive. The model assumes that the observed maturity stage originates from the categorization of latent continuous variables. We demonstrated this approach by testing whether there are differences in the maturity ogive of skipjack tuna (Katsuonus pelamis) in the western and central Pacific Ocean between two school types, i.e., free-swimming and floating-object-associated schools. The model results show that K. pelamis, given the same fork length, are more likely to have a higher maturity stage in a free-swimming school than those associated with floating objects. The gonadosomatic index revealed the same conclusion. Our results indicate that fish aggregation devices (FADs) could negatively affect the maturity of K. pelamis and consequently reduce the population reproductive potential. This study provides (1) an alternative approach to analyze fisheries ordinal data; (2) important quantitative evidence to evaluate the existing ecological hypotheses; and (3) implications for tuna fisheries management.
The Potential Role of Marine Fungi in Plastic Degradation – A Review
Authors: Zeghal Emna , Vaksmaa Annika , Vielfaure Hortense , Boekhout Teun , Niemann Helge
Published: December 2021

Plastic debris has been accumulating in the marine realm since the start of plastic mass production in the 1950s. Due to the adverse effects on ocean life, the fate of plastics in the marine environment is an increasingly important environmental issue. Microbial degradation, in addition to weathering, has been identified as a potentially relevant breakdown route for marine plastic debris. Although many studies have focused on microbial colonization and the potential role of microorganisms in breaking down marine plastic debris, little is known about fungi-plastic interactions. Marine fungi are a generally understudied group of microorganisms but the ability of terrestrial and lacustrine fungal taxa to metabolize recalcitrant compounds, pollutants, and some plastic types (e.g., lignin, solvents, pesticides, polyaromatic hydrocarbons, polyurethane, and polyethylene) indicates that marine fungi could be important degraders of complex organic matter in the marine realm, too. Indeed, recent studies demonstrated that some fungal strains from the ocean, such as Zalerion maritimum have the ability to degrade polyethylene. This mini-review summarizes the available information on plastic-fungi interactions in marine environments. We address (i) the currently known diversity of fungi colonizing marine plastic debris and provide (ii) an overview of methods applied to investigate the role of fungi in plastic degradation, highlighting their advantages and drawbacks. We also highlight (iii) the underestimated role of fungi as plastic degraders in marine habitats.
Year-Round Movements of Sooty Terns (Onychoprion fuscatus) Nesting Within One of the Atlantic’s Largest Marine Protected Areas
Authors: Reynolds S. James , Wearn Colin P. , Hughes B. John , Dickey Roger C. , Garrett Lucy J. H. , Walls Sean , Hughes Fay T. , Weber Nicola , Weber Sam B. , Leat Eliza H. K. , Andrews Kenickie , Ramos Jaime A. , Paiva Vitor H.
Published: December 2021

Seabirds are among the most threatened birds as a result of acute exposure to many anthropogenic threats. Their effective conservation requires a detailed understanding of how seabirds use marine habitats. Recently, one of the largest no-take marine reserves in the Atlantic was designated in tropical waters surrounding Ascension Island, on which the largest Atlantic population of sooty terns (Onychoprion fuscatus) breeds. Although they are the most abundant tropical seabird, they appear to have suffered marked population declines on Ascension Island as they have elsewhere. Here, we describe year-round movements and habitat use of male and female sooty terns between 2011 and 2015. On average, birds traveled 47,000 km during their 8 months of migration, during which they remained within 2,900 km of the island. They spent most of the day and night in flight, only touching down briefly on the ocean most likely to feed. Habitat suitability models successfully predicted foraging ranges of birds and their at-sea distributions varied considerably between seasons, years and sexes. Considerable variation in range overlap between birds and the new marine protected area (MPA) suggests that similar such studies of other marine taxa are urgently needed. The range of sooty terns mainly falls in the high seas outside of the new MPA, highlighting the very large areas that many oceanic seabirds forage across and the challenges their conservation present.
Using Predicted Patterns of 3D Prey Distribution to Map King Penguin Foraging Habitat
Authors: Proud Roland , Le Guen Camille , Sherley Richard B. , Kato Akiko , Ropert-Coudert Yan , Ratcliffe Norman , Jarman Simon , Wyness Adam , Arnould John P. Y. , Saunders Ryan A. , Fernandes Paul G. , Boehme Lars , Brierley Andrew S.
Published: December 2021

King penguins (Aptenodytes patagonicus) are an iconic Southern Ocean species, but the prey distributions that underpin their at-sea foraging tracks and diving behaviour remain unclear. We conducted simultaneous acoustic surveys off South Georgia and tracking of king penguins breeding ashore there in Austral summer 2017 to gain insight into habitat use and foraging behaviour. Acoustic surveys revealed ubiquitous deep scattering layers (DSLs; acoustically detected layers of fish and other micronekton that inhabit the mesopelagic zone) at c. 500 m and shallower ephemeral fish schools. Based on DNA extracted from penguin faecal samples, these schools were likely comprised of lanternfish (an important component of king penguin diets), icefish (Channichthyidaespp.) and painted noties (Lepidonotothen larseni). Penguins did not dive as deep as DSLs, but their prey-encounter depth-distributions, as revealed by biologging, overlapped at fine scale (10s of m) with depths of acoustically detected fish schools. We used neural networks to predict local scale (10 km) fish echo intensity and depth distribution at penguin dive locations based on environmental correlates, and developed models of habitat use. Habitat modelling revealed that king penguins preferentially foraged at locations predicted to have shallow and dense (high acoustic energy) fish schools associated with shallow and dense DSLs. These associations could be used to predict the distribution of king penguins from other colonies at South Georgia for which no tracking data are available, and to identify areas of potential ecological significance within the South Georgia and the South Sandwich Islands marine protected area.
Comparing Uncertainty Associated With 1-, 2-, and 3D Aerial Photogrammetry-Based Body Condition Measurements of Baleen Whales
Authors: Bierlich K. C. , Hewitt Joshua , Bird Clara N. , Schick Robert S. , Friedlaender Ari , Torres Leigh G. , Dale Julian , Goldbogen Jeremy , Read Andrew J. , Calambokidis John , Johnston David W.
Published: December 2021

Body condition is a crucial and indicative measure of an animal’s fitness, reflecting overall foraging success, habitat quality, and balance between energy intake and energetic investment toward growth, maintenance, and reproduction. Recently, drone-based photogrammetry has provided new opportunities to obtain body condition estimates of baleen whales in one, two or three dimensions (1D, 2D, and 3D, respectively) – a single width, a projected dorsal surface area, or a body volume measure, respectively. However, no study to date has yet compared variation among these methods and described how measurement uncertainty scales across these dimensions. This associated uncertainty may affect inference derived from these measurements, which can lead to misinterpretation of data, and lack of comparison across body condition measurements restricts comparison of results between studies. Here we develop a Bayesian statistical model using known-sized calibration objects to predict the length and width measurements of unknown-sized objects (e.g., a whale). We use the fitted model to predict and compare uncertainty associated with 1D, 2D, and 3D photogrammetry-based body condition measurements of blue, humpback, and Antarctic minke whales – three species of baleen whales with a range of body sizes. The model outputs a posterior predictive distribution of body condition measurements and allows for the construction of highest posterior density intervals to define measurement uncertainty. We find that uncertainty does not scale linearly across multi-dimensional measurements, with 2D and 3D uncertainty increasing by a factor of 1.45 and 1.76 compared to 1D, respectively. Each standardized body condition measurement is highly correlated with one another, yet 2D body area index (BAI) accounts for potential variation along the body for each species and was the most precise body condition metric. We hope this study will serve as a guide to help researchers select the most appropriate body condition measurement for their purposes and allow them to incorporate photogrammetric uncertainty associated with these measurements which, in turn, will facilitate comparison of results across studies.
Forecasted Shifts in Thermal Habitat for Cod Species in the Northwest Atlantic and Eastern Canadian Arctic
Authors: Cote David , Konecny Cassandra A. , Seiden Jennica , Hauser Tristan , Kristiansen Trond , Laurel Ben J.
Published: December 2021

Climate change will alter ecosystems and impose hardships on marine resource users as fish assemblages redistribute to habitats that meet their physiological requirements. Marine gadids represent some of the most ecologically and socio-economically important species in the North Atlantic, but face an uncertain future in the wake of rising ocean temperatures. We applied CMIP5 ocean temperature projections to egg survival and juvenile growth models of three northwest Atlantic coastal species of gadids (Atlantic cod, Polar cod, and Greenland cod), each with different thermal affinities and life histories. We illustrate how physiologically based species distribution models (SDMs) can be used to predict habitat distribution shifts and compare vulnerabilities of species and life stages with changing ocean conditions. We also derived an integrated habitat suitability index from the combined surfaces of each metric to predict areas and periods where thermal conditions were suitable for both life stages. Suitable thermal habitat shifted poleward for the juvenile life stages of all three species, but the area remaining differed across species and life stages through time. Arctic specialists like Polar cod are predicted to experience reductions in suitable juvenile habitat based on metrics of egg survival and growth potential. In contrast, habitat loss in boreal and subarctic species like Atlantic cod and Greenland cod may be dampened due to increases in suitable egg survival habitats as suitable juvenile growth potential habitats decrease. These results emphasize the need for mechanistic SDMs that can account for the combined effects of changing seasonal thermal requirements under varying climate change scenarios.
Potential Biodiversity Connectivity in the Network of Marine Protected Areas in Western Africa
Authors: Assis Jorge , Failler Pierre , Fragkopoulou Eliza , Abecasis David , Touron-Gardic Gregoire , Regalla Aissa , Sidina Ebaye , Dinis Herculano , Serrao Ester A.
Published: December 2021

Marine Protected Areas (MPAs) must function as networks with sufficient stepping-stone continuity between suitable habitats to ensure the conservation of naturally connected regional pools of biodiversity in the long-term. For most marine biodiversity, population connectivity is mediated by passively dispersed planktonic stages with contrasting dispersal periods, ranging from a few hours to hundreds of days. These processes exert a major influence on whether threatened populations should be conserved as either isolated units or linked metapopulations. However, the distance scales at which individual MPAs are connected are insufficiently understood. Here, we use a biophysical model integrating high-resolution ocean currents and contrasting dispersal periods to predict connectivity across the Network of MPAs in Western Africa. Our results revealed that connectivity differs sharply among distinct ecological groups, from highly connected (e.g., fish and crustacea) to predominantly isolated ecosystem structuring species (e.g., corals, macroalgae and seagrass) that might potentially undermine conservation efforts because they are the feeding or nursery habitats required by many other species. Regardless of their dispersal duration, all ecological groups showed a common connectivity gap in the Bijagós region of Guinea-Bissau, highlighting the important role of MPAs there and the need to further support and increase MPA coverage to ensure connectivity along the whole network. Our findings provide key insights for the future management of the Network of MPAs in Western Africa, highlighting the need to protect and ensure continuity of isolated ecosystem structuring species and identifying key regions that function as stepping-stone connectivity corridors.
Pseudotanais Sars, 1882 (Crustacea: Tanaidacea) From the SE Australian Slope: A Gap in Our Knowledge
Authors: Błażewicz Magdalena , Jakiel Aleksandra , Bird Graham J.
Published: December 2021

In the current paper, we present the description of five new species of pseudotanaids sampled off the Bass Strait during two campaigns (SLOPE), which took place in 1986/8 and 1994 from the upper continental margin (slope) at depths 200–1550 m, hopefully starting to fill a gap in the knowledge of this major habitat. From five species, two occurred off eastern coast between Gippsland and Jervis Point and three others on the southern coast between Great Otway (Otway Point) and Kangaroo Island. These five species bring the total number of described pseudotanaid species 94 and to six in Australian waters.
Liver Transcriptomic Analysis of the Effects of Dietary Fish Oil Revealed a Regulated Expression Pattern of Genes in Adult Female Spotted Scat (Scatophagus argus)
Authors: Wang Tuo , Jiang Dongneng , Shi Hongjuan , Mustapha Umar Farouk , Deng Siping , Liu Zhilong , Li Wanxin , Chen Huapu , Zhu Chunhua , Li Guangli
Published: December 2021

Despite the significance of n-3 long-chain polyunsaturated fatty acid (n-3 LC-PUFA) in fish oil in promoting the maturation of female broodstocks, the detailed mechanism of the effect on the expression of hepatic reproduction-related genes is still unclear. In this study, transcriptome sequencing was used to analyze the effect of the higher dietary n-3 LC-PUFA level on gene expression in the liver of adult females spotted scat. Two-year-old female spotted scat (average weight, 242.83 ± 50.90 g) were fed with diets containing 8% fish oil (FO) or 8% soybean oil (SO) for 40 days. The fatty acid profile in the serum, liver, and ovary was analyzed, and high proportions of n-3 LC-PUFA were observed in the FO group. The final average fish body weight and gonadosomatic index were similar between the FO and SO groups. The serum vitellogenin (Vtg) and hepatosomatic index (HSI) of the FO group were significantly higher and lower than that of the SO group, respectively. Comparatively, the liver transcriptome analysis showed 497 upregulated and 267 downregulated genes in the FO group. Among them, the expression levels of three estrogen-regulated genes (i.e., Vtga, Vtgb, and Zp4) were significantly higher in the FO than in the SO group. This expression pattern could be related to the upregulation of Hsd17b7 (the key gene for the synthesis of liver steroid hormone) and the downregulation of the Hsp90 (the estrogen receptor chaperone). The expression levels of Foxo1a and Lep, which are involved in the lipid metabolism, decreased significantly in the FO group, which may be related to the lower level of HSI in the FO group. The genes related to liver LC-PUFA absorption and transport, Fabp2 and Mfsd2ab, were significantly upregulated in the FO group, indicating that fish actively adapt to high-fish-oil diets. In brief, high-fish-oil diets can influence the expression of genes related to liver n-3 LC-PUFA metabolism and reproduction, inhibit the accumulation of liver fat, and promote the liver health and gonad development. This study will contribute to clarifying the mechanism of dietary n-3 LC-PUFA on promoting reproductive development in teleost fish.
Effects of Food Concentration and Photoperiod on Egg Production, Female Life Expectancy and Population Dynamics of the Paracalanid Copepod, Bestiolina amoyensis
Authors: Wang Lin , Wang Shuhong , Zeng Chaoshu , Wang Yuyue , Zeng Chunxiao
Published: December 2021

The paracalanid copepod,Bestiolina amoyensis, is a widely distributed species occurring in subtropical inshore waters across the Pacific Ocean. Its small size, herbivorous feeding habit, and high adaptability make the species one of the most promising candidates as potential live feed for hatchery larval rearing. This study investigated effects of different feeding density of microalgaeIsochrysisspp. (1 × 105, 2 × 105, 3 × 105, 4 × 105, and 5 × 105cells ml–1) and photoperiod (8L:16D, 12L:12D, and 16L:8D) on productivity-related parameters, including egg production, female life expectancy and population dynamics ofB. amoyensis. Results showed that total egg output over female lifespan, final population size and intrinsic rate of population of 12L:12D photoperiod treatments were always the highest among three photoperiod conditions, especially at the food concentration of 4 × 105cells ml–1, indicatingB. amoyensishad high reproductive performance and the population was in a more stable status. The number of nauplii from 4 × 105cells ml–1algal concentration treatment accounted for 75% of the population, and the ratio of females to males approaching 1:1 when photoperiod was 12L:12D; female life expectancy was 10.5 ± 0.6 days. In conclusion, our results showed thatIsochrysisspp. is a suitable feed forB. amoyensiswith an optimal concentration at 4 × 105cells mL–1; the optimal photoperiod forB. amoyensisrearing is 12L:12D. The relatively long reproductive lifespan and high intrinsic population increase rate makeB. amoyensisa good candidate to develop culture techniques for hatchery larval rearing.
What Shall We Do With a Sea of Plastics? A Systematic Literature Review on How to Pave the Road Toward a Global Comprehensive Plastic Governance Agreement
Authors: Cowan Emily , Tiller Rachel
Published: December 2021

In February 2022, the United Nations Environmental Assembly (UNEA) is expected to mandate negotiations for a legally binding plastic agreement. In preparations for such discussions, it is important to understand the academic research behind what a global treaty on plastic will require to succeed. Therefore, a systematic literature review was conducted on 64 peer-reviewed articles published before July 4th, 2021, that focused on global plastic governance and avenues to mitigate our pollution crisis. Once reviewed, the articles were organized into a series of four main categories: (1) plastic pollution overview articles, (2) top-down solutions, (3) bottom-up solutions, and finally a (4) global treaty as a solution. The analysis of these articles enabled an overarching review and discussion of what the literature suggested is required for the creation of a global plastics agreement. First, the researchers argued that previous global plastics governance literature is characterized by an optimist governance perspective, i.e., a view of governance as a problem-solving mechanism. Second, global plastics governance as a research field could make headway by engaging in further empirical investigation of current negotiations and solutions at the national level, especially in developing nations. In the end we found that a global agreement is feasible if it allows for multi-stakeholder solutions involving industry, governance, stakeholders, and citizens.
Discovery of Cellular Unit Cells With High Natural Frequency and Energy Absorption Capabilities by an Inverse Machine Learning Framework
Authors: Challapalli Adithya , Konlan John , Patel Dhrumil , Li Guoqiang
Published: December 2021

Cellular materials have been widely used in load carrying lightweight structures. Although lightweight increases natural frequency, low stiffness of cellular structures reduces natural frequency. Designing structures with higher natural frequency can usually avoid resonance. In addition, because of the less amount of materials used in cellular structures, the energy absorption capability usually decreases such as under impact loading. Therefore, designing cellular structures with higher natural frequency and higher energy absorption capability is highly desired. In this study, machine learning and novel inverse design techniques enable to search a huge space of unexplored structural designs. In this study, machine learning regression and Generative Neural Networks (GANs) were used to form an inverse design framework. Optimal cellular unit cells that surpass the performance of biomimetic structures inspired from honeycomb, plant stems and trabecular bone in terms of natural frequency and impact resistance were discovered using machine learning. The discovered optimal cellular unit cells exhibited 30–100% higher natural frequency and 300% higher energy absorption than those of the biomimetic counterparts. The discovered optimal unit cells were validated through experimental and simulation comparisons. The machine learning framework in this study would help in designing load carrying engineering structures with increased natural frequency and enhanced energy absorption capability.
Mid-Regional Proadrenomedullin (MR-proADM) and Microcirculation in Monitoring Organ Dysfunction of Critical Care Patients With Infection: A Prospective Observational Pilot Study
Authors: Domizi Roberta , Damiani Elisa , Scorcella Claudia , Carsetti Andrea , Giaccaglia Paolo , Casarotta Erika , Montomoli Jonathan , Gabbanelli Vincenzo , Brugia Marina , Moretti Marco , Adrario Erica , Donati Abele
Published: December 2021

Introduction: Microvascular alterations are involved in the development of organ injury in critical care patients. Mid-regional proadrenomedullin (MR-proADM) may predict organ damage and its evolution. The main objective of this study was to assess the correlation between MR-proADM and microvascular flow index (MFI) in a small cohort of 20 adult critical care patients diagnosed with infection, sepsis, or septic shock. Further objectives were to evaluate the correlation between the clearance of MR-proADM and the variables of microcirculation and between MR-proADM and the Sequential Organ Failure Assessment (SOFA) score.

Materials and Methods: This is a prospective observational pilot study. Inclusion criteria: consecutive adult patients admitted to intensive care unit (ICU) for or with infection-related illness. Daily measurement of MR-proADM and calculation of the SOFA score from admission in ICU to day 5. Repeated evaluations of sublingual microcirculation, collection of clinical data, and laboratory tests.

Results: Primary outcome: MR-proADM was not significantly correlated to the MFI at admission in ICU. A clearance of MR-proADM of 20% or more in the first 24 h was related to the improvement of the MFIs and MFIt [percentual variation of the MFIs + 12.35 (6.01–14.59)% vs. +2.23 (−4.45–6.01)%, p = 0.005; MFIt +9.09 (4.53–16.26)% vs. −1.43 (−4.36–3.12)%, p = 0.002].

Conclusion: This study did not support a direct correlation of MR-proADM with the MFI at admission in ICU; however, it showed a good correlation between the clearance of MR-proADM, MFI, and other microvascular variables. This study also supported the prognostic value of the marker. Adequately powered studies should be performed to confirm the findings.
Etiology and Risk Factors for Rheumatoid Arthritis: A State-of-the-Art Review
Authors: Romão Vasco C. , Fonseca João Eurico
Published: December 2021

Rheumatoid arthritis (RA) is the most common systemic inflammatory rheumatic disease. It is associated with significant burden at the patient and societal level. Extensive efforts have been devoted to identifying a potential cause for the development of RA. Epidemiological studies have thoroughly investigated the association of several factors with the risk and course of RA. Although a precise etiology remains elusive, the current understanding is that RA is a multifactorial disease, wherein complex interactions between host and environmental factors determine the overall risk of disease susceptibility, persistence and severity. Risk factors related to the host that have been associated with RA development may be divided into genetic; epigenetic; hormonal, reproductive and neuroendocrine; and comorbid host factors. In turn, environmental risk factors include smoking and other airborne exposures; microbiota and infectious agents; diet; and socioeconomic factors. In the present narrative review, aimed at clinicians and researchers in the field of RA, we provide a state-of-the-art overview of the current knowledge on this topic, focusing on recent progresses that have improved our comprehension of disease risk and development.
Unusual Reactions to Hymenoptera Stings: Current Knowledge and Unmet Needs in the Pediatric Population
Authors: Castagnoli Riccardo , Giovannini Mattia , Mori Francesca , Barni Simona , Pecoraro Luca , Arasi Stefania , Saretta Francesca , Mastrorilli Carla , Liotti Lucia , Caminiti Lucia , Sturm Gunter Johannes , Marseglia Gian Luigi , Novembre Elio
Published: December 2021

Hymenoptera stings are generally well-tolerated and usually cause limited local reactions, characterized by self-resolving erythema and edema associated with pain. However, Hymenoptera stings can induce immediate and delayed hypersensitivity reactions. In addition to these manifestations, unusual reactions to Hymenoptera stings have been reported. The latter are defined as unusual because of their atypical characteristics. They may differ from classical hypersensitivity reactions due to the stings' particular localization and the unusual involvement of one or more specific organs. Although unusual reactions to Hymenoptera stings are infrequent, it is essential for clinicians to know the possible related clinical manifestations. Here, we review the available literature and propose a diagnostic and management algorithm. At present, there are no defined guidelines for most of the unusual reactions to Hymenoptera stings, which should be managed in a tailored way according to the specifical clinical manifestations presented by the patients. Further studies are needed to better define these conditions and the underlying pathogenetic mechanisms to improve the diagnostic and therapeutic approach.