bluuebunny/crossref_metadata_2025 huggingface dataset:
Corticotropin-releasing factor induces functional and structural synaptic remodelling in acute stress
Authors: Vandael Dorien , Wierda Keimpe , Vints Katlijn , Baatsen Pieter , De Groef Lies , Moons Lieve , Rybakin Vasily , Gounko Natalia V.
Published: July 2021

Biological responses to stress are complex and highly conserved. Corticotropin-releasing factor (CRF) plays a central role in regulating these lifesaving physiological responses to stress. We show that, in mice, CRF rapidly changes Schaffer Collateral (SC) input into hippocampal CA1 pyramidal cells (PC) by modulating both functional and structural aspects of these synapses. Host exposure to acute stress, in vivo CRF injection, and ex vivo CRF application all result in fast de novo formation and remodeling of existing dendritic spines. Functionally, CRF leads to a rapid increase in synaptic strength of SC input into CA1 neurons, e.g., increase in spontaneous neurotransmitter release, paired-pulse facilitation, and repetitive excitability and improves synaptic plasticity: long-term potentiation (LTP) and long-term depression (LTD). In line with the changes in synaptic function, CRF increases the number of presynaptic vesicles, induces redistribution of vesicles towards the active zone, increases active zone size, and improves the alignment of the pre- and postsynaptic compartments. Therefore, CRF rapidly enhances synaptic communication in the hippocampus, potentially playing a crucial role in the enhanced memory consolidation in acute stress.
The epidemiology of Plasmodium vivax among adults in the Democratic Republic of the Congo
Authors: Brazeau Nicholas F. , Mitchell Cedar L. , Morgan Andrew P. , Deutsch-Feldman Molly , Watson Oliver John , Thwai Kyaw L. , Gelabert Pere , van Dorp Lucy , Keeler Corinna Y. , Waltmann Andreea , Emch Michael , Gartner Valerie , Redelings Ben , Wray Gregory A. , Mwandagalirwa Melchior K. , Tshefu Antoinette K. , Likwela Joris L. , Edwards Jessie K. , Verity Robert , Parr Jonathan B. , Meshnick Steven R. , Juliano Jonathan J.
Published: July 2021

Reports of P. vivax infections among Duffy-negative hosts have accumulated throughout sub-Saharan Africa. Despite this growing body of evidence, no nationally representative epidemiological surveys of P. vivax in sub-Saharan Africa have been performed. To overcome this gap in knowledge, we screened over 17,000 adults in the Democratic Republic of the Congo (DRC) for P. vivax using samples from the 2013-2014 Demographic Health Survey. Overall, we found a 2.97% (95% CI: 2.28%, 3.65%) prevalence of P. vivax infections across the DRC. Infections were associated with few risk-factors and demonstrated a relatively flat distribution of prevalence across space with focal regions of relatively higher prevalence in the north and northeast. Mitochondrial genomes suggested that DRC P. vivax were distinct from circulating non-human ape strains and an ancestral European P. vivax strain, and instead may be part of a separate contemporary clade. Our findings suggest P. vivax is diffusely spread across the DRC at a low prevalence, which may be associated with long-term carriage of low parasitemia, frequent relapses, or a general pool of infections with limited forward propagation.
Vectorial Doppler metrology
Authors: Fang Liang , Wan Zhenyu , Forbes Andrew , Wang Jian
Published: July 2021

The Doppler effect is a universal wave phenomenon that has spurred a myriad of applications. In early manifestations, it was implemented by interference with a reference wave to infer linear velocities along the direction of motion, and more recently lateral and angular velocities using scalar phase structured light. A consequence of the scalar wave approach is that it is technically challenging to directly deduce the motion direction of moving targets. Here we overcome this challenge using vectorially structured light with spatially variant polarization, allowing the velocity and motion direction of a moving particle to be fully determined. Using what we call a vectorial Doppler effect, we conduct a proof of principle experiment and successfully measure the rotational velocity (magnitude and direction) of a moving isotropic particle. The instantaneous position of the moving particle is also tracked under the conditions of knowing its starting position and continuous tracking. Additionally, we discuss its applicability to anisotropic particle detection, and show its potential to distinguish the rotation and spin of the anisotropic particle and measure its rotational velocity and spin speed (magnitude and direction). Our demonstration opens the path to vectorial Doppler metrology for detection of universal motion vectors with vectorially structured light.
M1BP cooperates with CP190 to activate transcription at TAD borders and promote chromatin insulator activity
Authors: Bag Indira , Chen Shue , Rosin Leah F. , Chen Yang , Liu Chen-Yu , Yu Guo-Yun , Lei Elissa P.
Published: July 2021

Genome organization is driven by forces affecting transcriptional state, but the relationship between transcription and genome architecture remains unclear. Here, we identified the Drosophila transcription factor Motif 1 Binding Protein (M1BP) in physical association with the gypsy chromatin insulator core complex, including the universal insulator protein CP190. M1BP is required for enhancer-blocking and barrier activities of the gypsy insulator as well as its proper nuclear localization. Genome-wide, M1BP specifically colocalizes with CP190 at Motif 1-containing promoters, which are enriched at topologically associating domain (TAD) borders. M1BP facilitates CP190 chromatin binding at many shared sites and vice versa. Both factors promote Motif 1-dependent gene expression and transcription near TAD borders genome-wide. Finally, loss of M1BP reduces chromatin accessibility and increases both inter- and intra-TAD local genome compaction. Our results reveal physical and functional interaction between CP190 and M1BP to activate transcription at TAD borders and mediate chromatin insulator-dependent genome organization.
Oropharyngeal cancer patient stratification using random forest based-learning over high-dimensional radiomic features
Authors: Patel Harsh , Vock David M. , Marai G. Elisabeta , Fuller Clifton D. , Mohamed Abdallah S. R. , Canahuate Guadalupe
Published: July 2021

To improve risk prediction for oropharyngeal cancer (OPC) patients using cluster analysis on the radiomic features extracted from pre-treatment Computed Tomography (CT) scans. 553 OPC Patients randomly split into training (80%) and validation (20%), were classified into 2 or 3 risk groups by applying hierarchical clustering over the co-occurrence matrix obtained from a random survival forest (RSF) trained over 301 radiomic features. The cluster label was included together with other clinical data to train an ensemble model using five predictive models (Cox, random forest, RSF, logistic regression, and logistic-elastic net). Ensemble performance was evaluated over the independent test set for both recurrence free survival (RFS) and overall survival (OS). The Kaplan–Meier curves for OS stratified by cluster label show significant differences for both training and testing (p val < 0.0001). When compared to the models trained using clinical data only, the inclusion of the cluster label improves AUC test performance from .62 to .79 and from .66 to .80 for OS and RFS, respectively. The extraction of a single feature, namely a cluster label, to represent the high-dimensional radiomic feature space reduces the dimensionality and sparsity of the data. Moreover, inclusion of the cluster label improves model performance compared to clinical data only and offers comparable performance to the models including raw radiomic features.
Biofilm inhibition and bactericidal activity of NiTi alloy coated with graphene oxide/silver nanoparticles via electrophoretic deposition
Authors: Pipattanachat Sirapat , Qin Jiaqian , Rokaya Dinesh , Thanyasrisung Panida , Srimaneepong Viritpon
Published: July 2021

Biofilm formation on medical devices can induce complications. Graphene oxide/silver nanoparticles (GO/AgNPs) coated nickel-titanium (NiTi) alloy has been successfully produced. Therefore, the aim of this study was to determine the anti-bacterial and anti-biofilm effects of a GO/AgNPs coated NiTi alloy prepared by Electrophoretic deposition (EPD). GO/AgNPs were coated on NiTi alloy using various coating times. The surface characteristics of the coated NiTi alloy substrates were investigated and its anti-biofilm and anti-bacterial effect on Streptococcus mutans biofilm were determined by measuring the biofilm mass and the number of viable cells using a crystal violet assay and colony counting assay, respectively. The results showed that although the surface roughness increased in a coating time-dependent manner, there was no positive correlation between the surface roughness and the total biofilm mass. However, increased GO/AgNPs deposition produced by the increased coating time significantly reduced the number of viable bacteria in the biofilm (p < 0.05). Therefore, the GO/AgNPs on NiTi alloy have an antibacterial effect on the S. mutans biofilm. However, the increased surface roughness does not influence total biofilm mass formation (p = 0.993). Modifying the NiTi alloy surface using GO/AgNPs can be a promising coating to reduce the consequences of biofilm formation.
Paternal and maternal long-term psychological outcomes after uterine artery embolization for severe post-partum hemorrhage
Authors: Bernasconi Maude , Eggel-Hort Béatrice , Horsch Antje , Vial Yvan , Denys Alban , Quibel Thibaud , Baud David
Published: July 2021

This study intend to compare the long-term psychological impact (depression, post-traumatic stress disorder) on both partners between patients that underwent uterine artery embolization (UAE) for post-partum hemorrhage (PPH) and uneventful deliveries. Women who experienced severe PPH treated by UAE in our institution between 2003 and 2013 were identified in our obstetrical database. These cases were matched to controls with uneventful deliveries. Matching criteria were maternal age, parity, ethnicity, year of delivery, birthweight, gestational age and mode of delivery. Patients and their partners completed validated questionnaires measuring post-traumatic stress (TSQ), as well as depression symptoms (MINI). A total of 63 cases of PPH and 189 matched controls (1:3) participated in a study exploring gynecological and obstetrical outcomes. With a mean of 8 years post-index delivery, patients after PPH showed increased risk of depression (p = 0.015) and post-traumatic stress disorder (22.2% versus 4.8%, p < 0.005) compared to controls. PPH remains strongly associated with post-traumatic stress disorder, even after adjustment for depression (adjusted odds ratio 5.1; 95% confidence intervals 1.5–17.5). Similarly, partners of patients with PPH showed a propensity to depression (p = 0.029) and post-traumatic stress disorder (11.5% versus 1.5%, p = 0.019). In conclusion, both women and their partners are at increased risk of long-term psychological adverse outcomes after PPH. Couples may benefit from psychological support.
Fine adaptive precision grip control without maximum pinch strength changes after upper limb neurodynamic mobilization
Authors: Dierick Frédéric , Brismée Jean-Michel , White Olivier , Bouché Anne-France , Périchon Céline , Filoni Nastasia , Barvaux Vincent , Buisseret Fabien
Published: July 2021

Before and immediately after passive upper limb neurodynamic mobilizations targeting the median nerve, grip ($$G_F$$

G
F

) and load ($$L_F$$

L
F

) forces applied by the thumb, index and major fingers (three-jaw chuck pinch) were collected using a manipulandum during three different grip precision tasks: grip-lift-hold-replace (GLHR), vertical oscillations (OSC), and vertical oscillations with up and down collisions (OSC/COLL/u, OSC/COLL/d). Several parameters were collected or computed from $$G_F$$

G
F

and $$L_F$$

L
F

. Maximum pinch strength and fingertips pressure sensation threshold were also examined. After the mobilizations, $$L_F$$

L
F

max changes from 3.2 ± 0.4 to 3.4 ± 0.4 N (p = 0.014), d$$G_F$$

G
F

from 89.0 ± 66.6 to 102.2 ± 59.6 $$N~\text{s}^{-1}$$

N

s

-
1

(p = 0.009), and d$$L_F$$

L
F

from 43.6 ± 17.0 to 56.0 ± 17.9 $$N~\text{s}^{-1}$$

N

s

-
1

($$p<$$

p
<

0.001) during GLHR. $$L_F$$

L
F

SD changes from 0.9 ± 0.3 to 1.0 ± 0.2 N (p = 0.004) during OSC. $$L_F$$

L
F

peak changes from 17.4 ± 8.3 to 15.1 ± 7.5 N ($$p<$$

p
<

0.001), $$G_F$$

G
F

from 12.4 ± 6.7 to 11.3 ± 6.8 N (p = 0.033), and $$L_F$$

L
F

from 2.9 ± 0.4 to 3.00 ± 0.4 N (p = 0.018) during OSC/COLL/u. $$G_F$$

G
F

peak changes from 13.5 ± 7.4 to 12.3 ± 7.7 N (p = 0.030) and $$L_F$$

L
F

from 14.5 ± 6.0 to 13.6 ± 5.5 N (p = 0.018) during OSC/COLL/d. Sensation thresholds at index and thumb were reduced (p = 0.001, p = 0.008). Precision grip adaptations observed after the mobilizations could be partly explained by changes in cutaneous median-nerve pressure afferents from the thumb and index fingertips.
Understanding the effect of smoking and drinking behavior on Parkinson's disease risk: a Mendelian randomization study
Authors: Domínguez-Baleón Carmen , Ong Jue-Sheng , Scherzer Clemens R. , Rentería Miguel E. , Dong Xianjun
Published: July 2021

Previous observational studies have identified correlations between Parkinson’s disease (PD) risk and lifestyle factors. However, whether or not those associations are causal remains unclear. To infer causality between PD risk and smoking or alcohol intake, we conducted a two-sample Mendelian randomization study using genome-wide association study summary statistics from the GWAS & Sequencing Consortium of Alcohol and Nicotine use study (1.2 million participants) and the latest meta-analysis from the International Parkinson’s Disease Genomics Consortium (37,688 PD cases and 18,618 proxy-cases). We performed sensitivity analyses, including testing for pleiotropy with MR-Egger and MR-PRESSO, and multivariable MR modeling to account for the genetic effects of competing substance use traits on PD risk. Our results revealed causal associations ofalcohol intake(OR 0.79; 95% CI 0.65–0.96; p = 0.021) andsmoking continuation(which comparescurrentvs.former smokers) (OR 0.64; 95% CI 0.46–0.89; p = 0.008) with lower PD risk. Multivariable MR analyses showed that the causal association betweendrinks per weekand PD is unlikely due to confounding by smoking behavior. Finally, frailty analyses suggested that the causal effects of bothalcohol intakeandsmoking continuationon PD risk estimated from MR analysis are not explained by the presence of survival bias alone. Our findings support the role of smoking as a protective factor against PD, but only when comparingcurrent vs. former smokers. Similarly, increased alcohol intake had a protective effect over PD risk, with thealcohol dehydrogenase 1B(ADH1B) locus as a potential candidate for further investigation of the mechanisms underlying this association.
Twenty-first-century projections of shoreline change along inlet-interrupted coastlines
Authors: Bamunawala Janaka , Ranasinghe Roshanka , Dastgheib Ali , Nicholls Robert J. , Murray A. Brad , Barnard Patrick L. , Sirisena T. A. J. G. , Duong Trang Minh , Hulscher Suzanne J. M. H. , van der Spek Ad
Published: July 2021

Sandy coastlines adjacent to tidal inlets are highly dynamic and widespread landforms, where large changes are expected due to climatic and anthropogenic influences. To adequately assess these important changes, both oceanic (e.g., sea-level rise) and terrestrial (e.g., fluvial sediment supply) processes that govern the local sediment budget must be considered. Here, we present novel projections of shoreline change adjacent to 41 tidal inlets around the world, using a probabilistic, reduced complexity, system-based model that considers catchment-estuary-coastal systems in a holistic way. Under the RCP 8.5 scenario, retreat dominates (90% of cases) over the twenty-first century, with projections exceeding 100 m of retreat in two-thirds of cases. However, the remaining systems are projected to accrete under the same scenario, reflecting fluvial influence. This diverse range of response compared to earlier methods implies that erosion hazards at inlet-interrupted coasts have been inadequately characterised to date. The methods used here need to be applied widely to support evidence-based coastal adaptation.
Enhanced extraction of skin interstitial fluid using a 3D printed device enabling tilted microneedle penetration
Authors: Kim Sanha , Lee Min Suk , Yang Hee Seok , Jung Jae Hwan
Published: July 2021

Interstitial fluid (ISF) is a body fluid that fills, surrounds cells and contains various biomarkers, but it has been challenging to extract ISF in a reliable and sufficient amount with high speed. To address the issues, we developed the tilted microneedle ISF collecting system (TMICS) fabricated by 3D printing. In this system, the microneedle (MN) was inserted at 66° to the skin by TMICS so that the MN length could be extended within a safe range of skin penetration. Moreover, TMICS incorporating three MN patches created reliable ISF collecting conditions by penetrating the skin at consistent angle and force, 4.9 N. Due to the MN length increase and the patch number expansion, the surface area of the penetrated tissue was increased, thereby confirming that ISF extraction efficiency was improved. Skin ISF was collected into the paper reservoir on the patch, and the absorbed area was converted into a volume. ISF extraction from the rat skin in vivo by TMICS was well tolerated, and the 2.9 μL of ISF was obtained within 30 s. Therefore, TMICS is promising to apply in the diagnosis of multiple biomarkers in ISF with high speed and stability.
Flexible time course of spatial frequency use during scene categorization
Authors: Wiesmann Sandro L. , Caplette Laurent , Willenbockel Verena , Gosselin Frédéric , Võ Melissa L.-H.
Published: July 2021

Human observers can quickly and accurately categorize scenes. This remarkable ability is related to the usage of information at different spatial frequencies (SFs) following a coarse-to-fine pattern: Low SFs, conveying coarse layout information, are thought to be used earlier than high SFs, representing more fine-grained information. Alternatives to this pattern have rarely been considered. Here, we probed all possible SF usage strategies randomly with high resolution in both the SF and time dimensions at two categorization levels. We show that correct basic-level categorizations of indoor scenes are linked to the sampling of relatively high SFs, whereas correct outdoor scene categorizations are predicted by an early use of high SFs and a later use of low SFs (fine-to-coarse pattern of SF usage). Superordinate-level categorizations (indoor vs. outdoor scenes) rely on lower SFs early on, followed by a shift to higher SFs and a subsequent shift back to lower SFs in late stages. In summary, our results show no consistent pattern of SF usage across tasks and only partially replicate the diagnostic SFs found in previous studies. We therefore propose that SF sampling strategies of observers differ with varying stimulus and task characteristics, thus favouring the notion of flexible SF usage.
Metformin-induced ROS upregulation as amplified by apigenin causes profound anticancer activity while sparing normal cells
Authors: Warkad Madhuri Shende , Kim Chea-Ha , Kang Beom-Goo , Park Soo-Hyun , Jung Jun-Sub , Feng Jing-Hui , Inci Gozde , Kim Sung-Chan , Suh Hong-Won , Lim Soon Sung , Lee Jae-Yong
Published: July 2021

Metformin increased cellular ROS levels in AsPC-1 pancreatic cancer cells, with minimal effect in HDF, human primary dermal fibroblasts. Metformin reduced cellular ATP levels in HDF, but not in AsPC-1 cells. Metformin increased AMPK, p-AMPK (Thr172), FOXO3a, p-FOXO3a (Ser413), and MnSOD levels in HDF, but not in AsPC-1 cells. p-AMPK and p-FOXO3a also translocated from the cytosol to the nucleus by metformin in HDF, but not in AsPC-1 cells. Transfection of si-FOXO3a in HDF increased ROS levels, while wt-FOXO3a-transfected AsPC-1 cells decreased ROS levels. Metformin combined with apigenin increased ROS levels dramatically and decreased cell viability in various cancer cells including AsPC-1 cells, with each drug used singly having a minimal effect. Metformin/apigenin combination synergistically decreased mitochondrial membrane potential in AsPC-1 cells but to a lesser extent in HDF cells. Metformin/apigenin combination in AsPC-1 cells increased DNA damage-, apoptosis-, autophagy- and necroptosis-related factors, but not in HDF cells. Oral administration with metformin/apigenin caused dramatic blocks tumor size in AsPC-1-xenografted nude mice. Our results suggest that metformin in cancer cells differentially regulates cellular ROS levels via AMPK-FOXO3a-MnSOD pathway and combination of metformin/apigenin exerts anticancer activity through DNA damage-induced apoptosis, autophagy and necroptosis by cancer cell-specific ROS amplification.
Evaluation of non-thermal effect of microwave radiation and its mode of action in bacterial cell inactivation
Authors: Shaw Priyanka , Kumar Naresh , Mumtaz Sohail , Lim Jun Sup , Jang Jung Hyun , Kim Doyoung , Sahu Bidya Dhar , Bogaerts Annemie , Choi Eun Ha
Published: July 2021

A growing body of literature has recognized the non-thermal effect of pulsed microwave radiation (PMR) on bacterial systems. However, its mode of action in deactivating bacteria has not yet been extensively investigated. Nevertheless, it is highly important to advance the applications of PMR from simple to complex biological systems. In this study, we first optimized the conditions of the PMR device and we assessed the results by simulations, using ANSYS HFSS (High Frequency Structure Simulator) and a 3D particle-in-cell code for the electron behavior, to provide a better overview of the bacterial cell exposure to microwave radiation. To determine the sensitivity of PMR, Escherichia coli and Staphylococcus aureus cultures were exposed to PMR (pulse duration: 60 ns, peak frequency: 3.5 GHz) with power density of 17 kW/cm2 at the free space of sample position, which would induce electric field of 8.0 kV/cm inside the PBS solution of falcon tube in this experiment at 25 °C. At various discharges (D) of microwaves, the colony forming unit curves were analyzed. The highest ratios of viable count reductions were observed when the doses were increased from 20D to 80D, which resulted in an approximate 6 log reduction in E. coli and 4 log reduction in S. aureus. Moreover, scanning electron microscopy also revealed surface damage in both bacterial strains after PMR exposure. The bacterial inactivation was attributed to the deactivation of oxidation-regulating genes and DNA damage.
Effect of strain-induced anisotropy on magnetization dynamics in Y3Fe5O12 films recrystallized on a lattice-mismatched substrate
Authors: Krysztofik Adam , Özoğlu Sevgi , McMichael Robert D. , Coy Emerson
Published: July 2021

We report on the correlation of structural and magnetic properties of Y3Fe5O12 (YIG) films deposited on Y3Al5O12 substrates using pulsed laser deposition. The recrystallization process leads to an unexpected formation of interfacial tensile strain and consequently strain-induced anisotropy contributing to the perpendicular magnetic anisotropy. The ferromagnetic resonance linewidth of YIG is significantly increased in comparison to a film on a lattice-matched Gd3Ga5O12 substrate. Notably, the linewidth dependency on frequency has a negative slope. The linewidth behavior is explained with the proposed anisotropy dispersion model.
Surveillance of West Nile virus infection in Kashgar Region, Xinjiang, China, 2013–2016
Authors: Zhang Yanping , Lei Wenwen , Wang Yali , Sui Haitian , Liu Bo , Li Fan , He Ying , Li Zhaoxia , Fu Shihong , Wang Lu , Xu Limin , Mahe Muti , Gao Zhenguo , Mamutijiang Tuerxun , Lv Zhi , Xiang Nijuan , Zhou Lei , Ni Daxin , Liang Guodong , Li Qun , Wang Huanyu , Feng Zijian
Published: July 2021

West Nile virus (WNV) was first isolated in mainland China from mosquitoes in Jiashi County, Kashgar Region, Xinjiang in 2011, following local outbreaks of viral meningitis and encephalitis caused by WNV. To elaborate the epidemiological characteristics of the WNV, surveillance of WNV infection in Kashgar Region, Xinjiang from 2013 to 2016 were carried out. Blood and CSF samples from surveillance human cases, blood of domestic chicken, cattle, sheep and mosquitoes in Kashgar Region were collected and detected. There were human 65 WNV Immunoglobulin M (IgM) antibody positive cases by ELISA screening, 6 confirmed WNV cases by the plaque reduction neutralization test (PRNT) screening. These cases occurred mainly concentrated in August to September of each year, and most of them were males. WNV-neutralizing antibodies were detected in both chickens and sheep, and the positive rates of neutralizing antibodies were 15.5% and 1.78%, respectively. A total of 15,637 mosquitoes were collected in 2013–2016, with Culex pipiens as the dominant mosquito species. Four and 1 WNV-positive mosquito pools were detected by RT-qPCR in 2013 and 2016 respectively. From these data, we can confirm that Jiashi County may be a natural epidemic foci of WNV disease, the trend highlights the routine virology surveillance in WNV surveillance cases, mosquitoes and avian should be maintained and enhanced to provide to prediction and early warning of outbreak an epidemic of WNV in China.
Flow coupling between active and passive fluids across water–oil interfaces
Authors: Chen Yen-Chen , Jolicoeur Brock , Chueh Chih-Che , Wu Kun-Ta
Published: July 2021

Active fluid droplets surrounded by oil can spontaneously develop circulatory flows. However, the dynamics of the surrounding oil and their influence on the active fluid remain poorly understood. To investigate interactions between the active fluid and the passive oil across their interface, kinesin-driven microtubule-based active fluid droplets were immersed in oil and compressed into a cylinder-like shape. The droplet geometry supported intradroplet circulatory flows, but the circulation was suppressed when the thickness of the oil layer surrounding the droplet decreased. Experiments with tracers and network structure analyses and continuum models based on the dynamics of self-elongating rods demonstrated that the flow transition resulted from flow coupling across the interface between active fluid and oil, with a millimeter–scale coupling length. In addition, two novel millifluidic devices were developed that could trigger and suppress intradroplet circulatory flows in real time: one by changing the thickness of the surrounding oil layer and the other by locally deforming the droplet. This work highlights the role of interfacial dynamics in the active fluid droplet system and shows that circulatory flows within droplets can be affected by millimeter–scale flow coupling across the interface between the active fluid and the oil.
Molecular surveillance of shiga toxigenic Escherichia coli in selected beef abattoirs in Osun State Nigeria
Authors: Ayoade Femi , Oguzie Judith , Eromon Philomena , Omotosho Omolola E. , Ogunbiyi Tosin , Olumade Testimony , Akano Kazeem , Folarin Onikepe , Happi Christian
Published: July 2021

Shiga toxigenic strains of E. coli (STEC) known to be etiological agents for diarrhea were screened for their incidence/occurrence in selected abattoirs sources in Osogbo metropolis of Osun State, Nigeria using a randomized block design. Samples were plated directly on selective and differential media and E. coli isolates. Multiplex PCR analysis was used to screen for the presence of specific virulence factors. These were confirmed serologically as non-O157 STEC using latex agglutination serotyping kit. Sequence analysis of PCR products was performed on a representative isolate showing the highest combination of virulence genes using the 16S gene for identification purposes only. Results showed that the average cfu/cm2 was significantly lower in the samples collected at Sekona-2 slaughter slab compared with those collected at Al-maleek batch abattoir and Sekona-1 slaughter slab in ascending order at P = 0.03. Moreover, the average cfu/cm2E. coli in samples collected from butchering knife was significantly lower when compared with that of the workers’ hand (P = 0.047) and slaughtering floor (P = 0.047) but not with the slaughter table (P = 0.98) and effluent water from the abattoir house (P = 0.39). These data suggest that the abattoir type may not be as important in the prevalence and spread of STEC as the hygiene practices of the workers. Sequence analysis of a representative isolate showed 100% coverage and 96.46% percentage identity with Escherichia coli O113:H21 (GenBank Accession number: CP031892.1) strain from Canada. This sequence was subsequently submitted to GenBank with accession number MW463885. From evolutionary analyses, the strain from Nigeria, sequenced in this study, is evolutionarily distant when compared with the publicly available sequences from Nigeria. Although no case of E. coli O157 was found within the study area, percent occurrence of non-O157 STEC as high as 46.3% at some of the sampled sites is worrisome and requires regulatory interventions in ensuring hygienic practices at the abattoirs within the study area.
Antimicrobial resistant bacteria recovered from retail ground meat products in the US include a Raoultella ornithinolytica co-harboring blaKPC-2 and blaNDM-5
Authors: Ballash Gregory A. , Albers Amy L. , Mollenkopf Dixie F. , Sechrist Emily , Adams Rachael J. , Wittum Thomas E.
Published: July 2021

Retail beef and pork, including processed products, can serve as vehicles for the zoonotic foodborne transmission of pathogens and antimicrobial resistant bacteria. However, processed and seasoned products like sausages, are not often included in research and surveillance programs. The objective of this study was to investigate retail ground beef and pork, including processed products, for the presence of common foodborne pathogens and antimicrobial resistant bacteria. We purchased 763 packages of fresh and fully cooked retail meat products during 29 visits to 17 grocery stores representing seven major grocery chains located in west and central Ohio. Each package of meat was evaluated for contamination with methicillin-resistant Staphylococcus aureus (MRSA), Salmonella spp., Enterobacteriaceae expressing extended-spectrum cephalosporin resistance, and carbapenemase-producing organisms (CPO). Only 3 of the 144 (2.1%) packages of fully cooked meat products contained any of these organisms, 1 with an extended-spectrum β-lactamase-producing (ESBL) Enterobacteriaceae and 2 with CPO. Among the 619 fresh meat products, we found that 85 (13.7%) packages were contaminated with MRSA, 19 (3.1%) with Salmonella, 136 (22.0%) with Enterobacteriaceae expressing an AmpC (blaCMY) resistance genotype, 25 (4.0%) with Enterobacteriaceae expressing an ESBL (blaCTX-M) resistance genotype, and 31 (5.0%) with CPO, primarily environmental organisms expressing intrinsic carbapenem resistance. However, one CPO, a Raoultella ornithinolytica, isolated from pork sausage co-harbored both blaKPC-2 and blaNDM-5 on IncN and IncX3 plasmids, respectively. Our findings suggest that fresh retail meat, including processed products can be important vehicles for the transmission of foodborne pathogens and antimicrobial resistant bacteria, including those with epidemic carbapenemase-producing genotypes.
A random walk model that accounts for space occupation and movements of a large herbivore
Authors: Berthelot Geoffroy , Saïd Sonia , Bansaye Vincent
Published: July 2021

Animal movement has been identified as a key feature in understanding animal behavior, distribution and habitat use and foraging strategies among others. Large datasets of invididual locations often remain unused or used only in part due to the lack of practical models that can directly infer the desired features from raw GPS locations and the complexity of existing approaches. Some of them being disputed for their lack of biological justifications in their design. We propose a simple model of individual movement with explicit parameters, based on a two-dimensional biased and correlated random walk with three forces related to advection (correlation), attraction (bias) and immobility of the animal. These forces can be directly estimated using individual data. We demonstrate the approach by using GPS data of 5 red deer with a high frequency sampling. The results show that a simple random walk template can account for the spatial complexity of wild animals. The practical design of the model is also verified for detecting spatial feature abnormalities and for providing estimates of density and abundance of wild animals. Integrating even more additional features of animal movement, such as individuals’ interactions or environmental repellents, could help to better understand the spatial behavior of wild animals.
An artificial neural network approach integrating plasma proteomics and genetic data identifies PLXNA4 as a new susceptibility locus for pulmonary embolism
Authors: Razzaq Misbah , Iglesias Maria Jesus , Ibrahim-Kosta Manal , Goumidi Louisa , Soukarieh Omar , Proust Carole , Roux Maguelonne , Suchon Pierre , Boland Anne , Daiain Delphine , Olaso Robert , Havervall Sebastian , Thalin Charlotte , Butler Lynn , Deleuze Jean-François , Odeberg Jacob , Morange Pierre-Emmanuel , Trégouët David-Alexandre
Published: July 2021

Venous thromboembolism is the third common cardiovascular disease and is composed of two entities, deep vein thrombosis (DVT) and its potential fatal form, pulmonary embolism (PE). While PE is observed in ~ 40% of patients with documented DVT, there is limited biomarkers that can help identifying patients at high PE risk. To fill this need, we implemented a two hidden-layers artificial neural networks (ANN) on 376 antibodies and 19 biological traits measured in the plasma of 1388 DVT patients, with or without PE, of the MARTHA study. We used the LIME algorithm to obtain a linear approximate of the resulting ANN prediction model. As MARTHA patients were typed for genotyping DNA arrays, a genome wide association study (GWAS) was conducted on the LIME estimate. Detected single nucleotide polymorphisms (SNPs) were tested for association with PE risk in MARTHA. Main findings were replicated in the EOVT study composed of 143 PE patients and 196 DVT only patients. The derived ANN model for PE achieved an accuracy of 0.89 and 0.79 in our training and testing sets, respectively. A GWAS on the LIME approximate identified a strong statistical association peak (rs1424597: p = 5.3 × 10–7) at the PLXNA4 locus. Homozygote carriers for the rs1424597-A allele were then more frequently observed in PE than in DVT patients from the MARTHA (2% vs. 0.4%, p = 0.005) and the EOVT (3% vs. 0%, p = 0.013) studies. In a sample of 112 COVID-19 patients known to have endotheliopathy leading to acute lung injury and an increased risk of PE, decreased PLXNA4 levels were associated (p = 0.025) with worsened respiratory function. Using an original integrated proteomics and genetics strategy, we identified PLXNA4 as a new susceptibility gene for PE whose exact role now needs to be further elucidated.
Radiation exposure induces cross-species temporal metabolic changes that are mitigated in mice by amifostine
Authors: Crook Alexandra , De Lima Leite Aline , Payne Thomas , Bhinderwala Fatema , Woods Jade , Singh Vijay K. , Powers Robert
Published: July 2021

Exposure to acute, damaging radiation may occur through a variety of events from cancer therapy and industrial accidents to terrorist attacks and military actions. Our understanding of how to protect individuals and mitigate the effects of radiation injury or Acute Radiation Syndrome (ARS) is still limited. There are only a few Food and Drug Administration-approved therapies for ARS; whereas, amifostine is limited to treating low dose (0.7–6 Gy) radiation poisoning arising from cancer radiotherapy. An early intervention is critical to treat ARS, which necessitates identifying diagnostic biomarkers to quickly characterize radiation exposure. Towards this end, a multiplatform metabolomics study was performed to comprehensively characterize the temporal changes in metabolite levels from mice and non-human primate serum samples following γ-irradiation. The metabolomic signature of amifostine was also evaluated in mice as a model for radioprotection. The NMR and mass spectrometry metabolomics analysis identified 23 dysregulated pathways resulting from the radiation exposure. These metabolomic alterations exhibited distinct trajectories within glucose metabolism, phospholipid biosynthesis, and nucleotide metabolism. A return to baseline levels with amifostine treatment occurred for these pathways within a week of radiation exposure. Together, our data suggests a unique physiological change that is independent of radiation dose or species. Furthermore, a metabolic signature of radioprotection was observed through the use of amifostine prophylaxis of ARS.
A non-toxic, reversibly released imaging probe for oral cancer that is derived from natural compounds
Authors: Ghanim Magda , Relitti Nicola , McManus Gavin , Butini Stefania , Cappelli Andrea , Campiani Giuseppe , Mok K. H. , Kelly Vincent P.
Published: July 2021

CD44 is emerging as an important receptor biomarker for various cancers. Amongst these is oral cancer, where surgical resection remains an essential mode of treatment. Unfortunately, surgery is frequently associated with permanent disfigurement, malnutrition, and functional comorbidities due to the difficultly of tumour removal. Optical imaging agents that can guide tumour tissue identification represent an attractive approach to minimising the impact of surgery. Here, we report the synthesis of a water-soluble fluorescent probe, namely HA-FA-HEG-OE (compound 1), that comprises components originating from natural sources: oleic acid, ferulic acid and hyaluronic acid. Compound 1 was found to be non-toxic, displayed aggregation induced emission and accumulated intracellularly in vesicles in SCC-9 oral squamous cells. The uptake of 1 was fully reversible over time. Internalization of compound 1 occurs through receptor mediated endocytosis; uniquely mediated through the CD44 receptor. Uptake is related to tumorigenic potential, with non-tumorigenic, dysplastic DOK cells and poorly tumorigenic MCF-7 cells showing only low intracellular levels and highlighting the critical role of endocytosis in cancer progression and metastasis. Together, the recognised importance of CD44 as a cancer stem cell marker in oral cancer, and the reversible, non-toxic nature of 1, makes it a promising agent for real time intraoperative imaging.
In-vivo-wear in composite and ceramic full mouth rehabilitations over 3 years
Authors: Burian Gintare , Erdelt Kurt , Schweiger Josef , Keul Christine , Edelhoff Daniel , Güth Jan-Frederik
Published: July 2021

The aim of this study was to quantify and to compare the wear rates of premolar (PM) and molar (M) restorations of lithium disilicate ceramic (LS2) and an experimental CAD/CAM polymer (COMP) in cases of complex rehabilitations with changes in vertical dimension of occlusion (VDO). Twelve patients with severe tooth wear underwent prosthetic rehabilitation, restoring the VDO with antagonistic occlusal coverage restorations either out of LS2 (n = 6 patients, n = 16 posterior restorations/patient; N = 96 restorations/year) or COMP (n = 6 patients; n = 16 posterior restorations/patient; N = 96 restorations/year). Data was obtained by digitalization of plaster casts with a laboratory scanner at annual recalls (350 ± 86 days; 755 ± 92 days; 1102 ± 97 days). Each annual recall dataset of premolar and molar restorations (N = 192) was overlaid individually with the corresponding baseline dataset using an iterative best-fit method. Mean vertical loss of the occlusal contact areas (OCAs) was calculated for each restoration and recall time. For LS2 restorations, the mean wear rate per month over 1 year was 7.5 ± 3.4 μm (PM), 7.8 ± 2.0 μm (M), over 2 years 3.8 ± 1.6 µm (PM), 4.4 ± 1.5 µm (M), over 3 years 2.8 ± 1.3 µm (PM), 3.4 ± 1.7 µm (M). For COMP restorations, the mean wear rate per month over 1 year was 15.5 ± 8.9 μm (PM), 28.5 ± 20.2 μm (M), over 2 years 9.2 ± 5.9 µm (PM), 16.7 ± 14.9 µm (M), over 3 years 8.6 ± 5.3 µm (PM), 9.5 ± 8.0 µm (M). Three COMP restorations fractured after two years and therefore were not considered in the 3-year results. The wear rates in the LS2 group showed significant differences between premolars and molars restorations (p = 0.041; p = 0.023; p = 0.045). The wear rates in COMP group differed significantly between premolars and molars only in the first two years (p < 0.0001; p = 0.007). COMP restorations show much higher wear rates compared to LS2. The presented results suggest that with increasing time in situ, the monthly wear rates for both materials decreased over time. On the basis of this limited dataset, both LS2 and COMP restorations show reasonable clinical wear rates after 3 years follow-up. Wear of COMP restorations was higher, however prosthodontic treatment was less invasive. LS2 showed less wear, yet tooth preparation was necessary. Clinicians should balance well between necessary preparation invasiveness and long-term occlusal stability in patients with worn dentitions.
The UL16 protein of HSV-1 promotes the metabolism of cell mitochondria by binding to ANT2 protein
Authors: Li Shiyu , Liu Shuting , Dai Zhenning , Zhang Qian , Xu Yichao , Chen Youyu , Jiang Zhenyou , Huang Wenhua , Sun Hanxiao
Published: July 2021

Long-term studies have shown that virus infection affects the energy metabolism of host cells, which mainly affects the function of mitochondria and leads to the hydrolysis of ATP in host cells, but it is not clear how virus infection participates in mitochondrial energy metabolism in host cells. In our study, HUVEC cells were infected with HSV-1, and the differentially expressed genes were obtained by microarray analysis and data analysis. The viral gene encoding protein UL16 was identified to interact with host protein ANT2 by immunoprecipitation and mass spectrometry. We also reported that UL16 transfection promoted oxidative phosphorylation of glucose and significantly increased intracellular ATP content. Furthermore, UL16 was transfected into the HUVEC cell model with mitochondrial dysfunction induced by d-Gal, and it was found that UL16 could restore the mitochondrial function of cells. It was first discovered that viral protein UL16 could enhance mitochondrial function in mammalian cells by promoting mitochondrial metabolism. This study provides a theoretical basis for the prevention and treatment of mitochondrial dysfunction or the pathological process related to mitochondrial dysfunction.
Clinical, epidemiological aspects, and trends of Hepatitis B in Brazil from 2007 to 2018
Authors: Pinto Cathianne Sacramento , Costa Galileu Barbosa , Allaman Ivan Bezerra , Gadelha Sandra Rocha
Published: July 2021

Hepatitis B virus (HBV) infection is a concern for public health due to its high prevalence, high infectivity, morbidity, and mortality worldwide. Brazil presents a low HBV prevalence, but has considerable heterogeneity among its geographic regions. Here, we describe the epidemiological profile of HBV infection in different regions of Brazil during 2007–2018, as well as the historical trends associated with the infection. We conducted an observational, ecological time-series study using secondary data collected from the National Notifiable Diseases Information System (SINAN). Our findings suggest that HBV infection was more likely to occur in young, sexually active adults. Individuals from Northeast and Midwest regions were more likely to present acute HBV infection, while individuals from South region were more likely to present chronic HBV infection, reinforcing that specific strategies are required for each particular region. Additionally, we observed a general decreasing trend of infection starting in 2014, however there was an increasing trend of infection in men and in individuals over 40 years old. Although we observed a decreasing trend in HBV infection, active surveillance is needed to prevent HBV spread and possible epidemics, as well as encouraging the vaccination of adults, especially young adult males. Our findings can inform the conduct of large-scale observational studies to evaluate clinical, economical, and social impacts of HBV infections, leading to improved social policies. Finally, our results highlight the need to improve data quality and completeness of epidemiological data, minimizing eventual errors that can make prevention and control strategies difficult.
Searching for a second excitation in the inelastic neutron scattering spectrum of a liquid metal: a Bayesian analysis
Authors: De Francesco Alessio , Bafile Ubaldo , Cunsolo Alessandro , Scaccia Luisa , Guarini Eleonora
Published: July 2021

When probed at nanometer and picosecond scales, the properties of a liquid present striking analogies with the ones of the corresponding solid, one of the most surprising is the ability of supporting shear wave propagation, as a rigid medium. Although this evidence is being reported by a growing number of terahertz scattering measurements, it remains an open question whether it is universal or rather typical of some liquids only. Furthermore, given its elusive signatures in the scattering signal, the detection of this effect appears as a typical case where an unintentional “bias of confirmation” can mislead experimentalists. We thus decided to use a Bayesian inference approach to achieve a probabilistically grounded and evidence-based lineshape modeling of the inelastic neutron scattering spectra from liquid silver, whose simulated density autocorrelations bear evidence of a shear mode propagation over very short distances. The result of our analysis indicates that the observation of any additional, non-longitudinal, acoustic modes in this simple system goes beyond the accuracy of the used scattering method.
Use of Gaussian process regression for radiation mapping of a nuclear reactor with a mobile robot
Authors: West Andrew , Tsitsimpelis Ioannis , Licata Mauro , Jazbec Anz̆e , Snoj Luka , Joyce Malcolm J. , Lennox Barry
Published: July 2021

Collection and interpolation of radiation observations is of vital importance to support routine operations in the nuclear sector globally, as well as for completing surveys during crisis response. To reduce exposure to ionizing radiation that human workers can be subjected to during such surveys, there is a strong desire to utilise robotic systems. Previous approaches to interpolate measurements taken from nuclear facilities to reconstruct radiological maps of an environment cannot be applied accurately to data collected from a robotic survey as they are unable to cope well with irregularly spaced, noisy, low count data. In this work, a novel approach to interpolating radiation measurements collected from a robot is proposed that overcomes the problems associated with sparse and noisy measurements. The proposed method integrates an appropriate kernel, benchmarked against the radiation transport code MCNP6, into the Gaussian Process Regression technique. The suitability of the proposed technique is demonstrated through its application to data collected from a bespoke robotic system used to conduct a survey of the Joz̆ef Stefan Institute TRIGA Mark II nuclear reactor during steady state operation, where it is shown to successfully reconstruct gamma dosimetry estimates in the reactor hall and aid in identifying sources of ionizing radiation.