bluuebunny/crossref_metadata_2025 huggingface dataset:
Nexus Between Financial Development, FDI, Globalization, Energy Consumption and Environment: Evidence From BRI Countries
Authors: Lu Jie , Imran Muhammad , Haseeb Abdul , Saud Shah , Wu Mengyun , Siddiqui Faiza , Khan Muhammad Jalal
Published: September 2021

This study explores the nexus between foreign direct investment, financial development, energy consumption, economic growth and globalization for a selected panel of Belt and Road Initiative (BRI) countries over the period 1990–2016. After employing appropriate panel unit root tests, the Westerlund co-integration test, the DSUR long-run panel estimation approach and the Dumitrescu-Hurlin panel causality test, the results reveal a significant long-run relationship among the analyzed variables. The DSUR results show that energy consumption is boosted by 0.023 and 0.790% when a 1% rise occurs in foreign direct investment and economic growth. A 1% increase in financial development and globalization reduces energy consumption by 0.049 and 0.621%, respectively. We also found bidirectional relationships of energy consumption with financial development and foreign direct investment with globalization for the selected sample of our study. A unidirectional causal relationship exists, moving from energy consumption towards both financial development and foreign direct investment. An increase in FDI, the introduction of energy-efficient technology, and development of the financial sector lead to sustainable economic growth. The findings reveal the need to formulate policies that promote energy efficiency among Belt and Road (BR) countries. The policy implications of this study are presented in the Conclusion.
Power-to-Syngas: A Parareal Optimal Control Approach
Authors: Maggi Andrea , Garmatter Dominik , Sager Sebastian , Stoll Martin , Sundmacher Kai
Published: September 2021

A chemical plant layout for the production of syngas from renewable power, H2O and biogas, is presented to ensure a steady productivity of syngas with a constant H2-to-CO ratio under time-dependent electricity provision. An electrolyzer supplies H2 to the reverse water-gas shift reactor. The system compensates for a drop in electricity supply by gradually operating a tri-reforming reactor, fed with pure O2 directly from the electrolyzer or from an intermediate generic buffering device. After the introduction of modeling assumptions and governing equations, suitable reactor parameters are identified. Finally, two optimal control problems are investigated, where computationally expensive model evaluations are lifted viaparareal and necessary objective derivatives are calculated via the continuous adjoint method. For the first time, modeling, simulation, and optimal control are applied to a combination of the reverse water-gas shift and tri-reforming reactor, exploring a promising pathway in the conversion of renewable power into chemicals.
Assessment of Greenhouse Gases Emission in Maize-Wheat Cropping System Under Varied N Fertilizer Application Using Cool Farm Tool
Authors: Kumar Rakesh , Karmakar S. , Minz Asisan , Singh Jitendra , Kumar Abhay , Kumar Arvind
Published: September 2021

In recent decades, climate change induced by enhanced global warming is one of the biggest challenges at the global level. Agriculture sectors significantly contribute to total anthropogenic greenhouse gas emission to the atmosphere. Wheat and maize, cultivated globally, and consumed in different forms, are considered as crucial staple cereal for ensuring food security to global population. The management practices involving land preparation, sowing, fertilizer application, irrigation, pest management, etc. significantly influence the emission of carbon dioxide (CO2) and nitrous oxide (N2O) from agricultural soil. In this study, CO2and N2O emission were assessed from maize and wheat crops at four different levels of N fertilizer using cool farm tool model. Emissions of CO2per hectare varied from 331.4 to 1,088.3 kgCO2in maize and ranged from 292.3 to 765.3 kgCO2in wheat on application of different doses of N. The total GHG emission in maize crops ranged from 859.5 to 3,003.4 kgCO2eq per hectare with the application of nitrogen at varying levels (0–240 kg N per hectare). The highest N2O efflux (0.368 kg per ton) was observed at 240 kg N per hectare under wheat crop. The total on-farm emissions, through fertilizer production, account for about 33.7%, and emission of N2O contributes only 65.9%, whereas pesticides account merely 0.4% under maize-wheat cropping. This study confirms that the direct emission of N2O was totally dependent on N fertilizers application rate; however, the indirect emission was controlled by the fuels and energy consumption.
Reflections and Insights on the Evolution of the Biological Remediation of Contaminated Soils
Authors: Alkorta Itziar , Garbisu Carlos
Published: September 2021

The field of soil biological remediation was initially focused on the use of microorganisms. For organic contaminants, biostimulation and bioaugmentation were the strategies of choice. For heavy metals, bioremediation was centered on the feasibility of using microorganisms to reduce metal toxicity. Partly due to the impossibility to degrade metals, phytoremediation emerged proposing the use of plants to extract them (phytoextraction) or reduce their bioavailability (phytostabilization). Later, microbial-assisted phytoremediation addressed the inoculation of plant growth-promoting microorganisms to improve phytoremediation efficiency. Similarly, plant-assisted bioremediation examined the stimulatory effect of plant growth on the microbial degradation of soil contaminants. The combination of plants and microorganisms is nowadays often recommended for mixed contaminated soils. Finally, phytomanagement emerged as a phytotechnology focused on the use of plants and associated microorganisms to decrease contaminant linkages, maximize ecosystem services, and provide economic revenues. Although biological remediation methods have been in use for decades, the truth is that they have not yet yielded the expected results. Here, we claim that much more research is needed to make the most of the many ways that microorganisms have evolutionary developed to access the contaminants and to better understand the soil microbial networks responsible, to a great extent, for soil functioning.
Fire Dynamics in Boreal Forests Over the 20th Century: A Data-Model Comparison
Authors: Molinari Chiara , Hantson Stijn , Nieradzik Lars Peter
Published: September 2021

Fire regimes across the world are expected to be altered by continuing variations in socio-economic conditions and climate. Current global fire-vegetation models are able to represent the present-day fire activity, but it is unclear how well they can simulate past or future scenarios. Here we use sedimentary charcoal-based biomass burning reconstructions to evaluate fire probability and total carbon flux emitted to the atmosphere per year simulated by the dynamic global vegetation model LPJ-GUESS with its incorporated fire model SIMFIRE-BLAZE across the boreal region during the last century. The analyses were run for the whole time period (1900–2000 CE), as well as for the intervals 1900–1950 CE and 1950–2000 CE. The data–model comparison for the 20th century reveals a general disagreement in trends between charcoal reconstructions (with decreasing or stable trends) and simulations (showing an overall increase) at both global (boreal forests) and continental scales (North America and Fennoscandia), as well as for most of the regional sub-areas (Canada, Norway and Sweden). The only exceptions are Alaska and Finland/Russia Karelia, where all the variables increase. Negative correlations between observations and model outputs are also recorded for the two different sub-periods, except for Alaska and North America during the time interval 1900–1950 CE, and Norway and Finland/Russia Karelia between 1950 and 2000 CE. Despite several uncertainties in charcoal records, main differences between modeled and observed fire activity are probably due to limitations in the representation of the human impact on fire regime (especially connected to forest management and landscape fragmentation) in the model simulations.
Lager Yeast Design Through Meiotic Segregation of a Saccharomyces cerevisiae × Saccharomyces eubayanus Hybrid
Authors: Krogerus Kristoffer , Magalhães Frederico , Castillo Sandra , Peddinti Gopal , Vidgren Virve , De Chiara Matteo , Yue Jia-Xing , Liti Gianni , Gibson Brian
Published: September 2021

Yeasts in the lager brewing group are closely related and consequently do not exhibit significant genetic variability. Here, an artificial Saccharomyces cerevisiae × Saccharomyces eubayanus tetraploid interspecies hybrid was created by rare mating, and its ability to sporulate and produce viable gametes was exploited to generate phenotypic diversity. Four spore clones obtained from a single ascus were isolated, and their brewing-relevant phenotypes were assessed. These F1 spore clones were found to differ with respect to fermentation performance under lager brewing conditions (15°C, 15 °Plato), production of volatile aroma compounds, flocculation potential and temperature tolerance. One spore clone, selected for its rapid fermentation and acetate ester production was sporulated to produce an F2 generation, again comprised of four spore clones from a single ascus. Again, phenotypic diversity was introduced. In two of these F2 clones, the fermentation performance was maintained and acetate ester production was improved relative to the F1 parent and the original hybrid strain. Strains also performed well in comparison to a commercial lager yeast strain. Spore clones varied in ploidy and chromosome copy numbers, and faster wort fermentation was observed in strains with a higher ploidy. An F2 spore clone was also subjected to 10 consecutive wort fermentations, and single cells were isolated from the resulting yeast slurry. These isolates also exhibited variable fermentation performance and chromosome copy numbers, highlighting the instability of polyploid interspecific hybrids. These results demonstrate the value of this natural approach to increase the phenotypic diversity of lager brewing yeast strains.
Cross-Disorder Genomics Data Analysis Elucidates a Shared Genetic Basis Between Major Depression and Osteoarthritis Pain
Authors: Barowsky Sophie , Jung Jae-Yoon , Nesbit Nicholas , Silberstein Micah , Fava Maurizio , Loggia Marco L. , Smoller Jordan W. , Lee Phil H.
Published: September 2021

Osteoarthritis (OA) and major depression (MD) are two debilitating disorders that frequently co-occur and affect millions of the elderly each year. Despite the greater symptom severity, poorer clinical outcomes, and increased mortality of the comorbid conditions, we have a limited understanding of their etiologic relationships. In this study, we conducted the first cross-disorder investigations of OA and MD, using genome-wide association data representing over 247K cases and 475K controls. Along with significant positive genome-wide genetic correlations (rg = 0.299 ± 0.026, p = 9.10 × 10–31), Mendelian randomization (MR) analysis identified a bidirectional causal effect between OA and MD (βOA→MD = 0.09, SE = 0.02, z-score p-value < 1.02 × 10–5; βMD→OA = 0.19, SE = 0.026, p < 2.67 × 10–13), indicating genetic variants affecting OA risk are, in part, shared with those influencing MD risk. Cross-disorder meta-analysis of OA and MD identified 56 genomic risk loci (Pmeta ≤ 5 × 10–8), which show heightened expression of the associated genes in the brain and pituitary. Gene-set enrichment analysis highlighted “mechanosensory behavior” genes (GO:0007638; Pgene_set = 2.45 × 10–8) as potential biological mechanisms that simultaneously increase susceptibility to these mental and physical health conditions. Taken together, these findings show that OA and MD share common genetic risk mechanisms, one of which centers on the neural response to the sensation of mechanical stimulus. Further investigation is warranted to elaborate the etiologic mechanisms of the pleiotropic risk genes, as well as to develop early intervention and integrative clinical care of these serious conditions that disproportionally affect the aging population.
Circulating Cell-Free mtDNA Content as a Non-invasive Prognostic Biomarker in HCC Patients Receiving TACE and Traditional Chinese Medicine
Authors: Zhou Guanlin , Li Ying , Li Shicheng , Liu Hongxia , Xu Fei , Lai Xiaohuan , Zhang Qiong , Xu Jingxiang , Wan Shaogui
Published: September 2021

Hepatocellular carcinoma (HCC) accounts for 70–85% of liver cancer, and about 85% of HCC are hepatitis B virus-related (HBV-HCC) in China. Transarterial chemoembolization (TACE) combined with traditional Chinese medicine (TCM) has been reported as an effective treatment. Potential biomarkers to stratify patients who may benefit from this treatment are needed. In this study, we aimed to evaluate whether circulating cell-free mitochondrial DNA (ccf-mtDNA) content was associated with the outcome of HCC patients, especially of those who received the combination treatment of TACE and TCM. Univariate and multivariate Cox analyses were conducted to evaluate the association between ccf-mtDNA content and the overall survival of HBV-HCC patients. Kaplan–Meier analysis was used to compare the survival differences between patients with low and high ccf-mtDNA content. In a hospital-based cohort with 141 HBV-HCC patients, there was no statistically significant association between the ccf-mtDNA content and the overall survival of HBV-HCC patients in the univariate analysis, but a borderline significant association was found in the multivariate analyses. In a subcohort of 50 HBV-HCC patients who received TACE and TCM treatment, high ccfDNA content conferred an increased death risk with a hazard ratio of 4.01 (95% confidence interval: 1.25–12.84, p = 0.019) in the multivariate analysis. Kaplan–Meier survival analysis also showed that patients with high ccf-mtDNA content had unfavorable survival (log rank p = 0.097). Our findings suggest that ccf-mtDNA content is a potential non-invasive prognostic biomarker in HCC patients receiving TACE and TCM treatment.
Mitonuclear Interactions Produce Diverging Responses to Mild Stress in Drosophila Larvae
Authors: Rodríguez Enrique , Grover Thomas Finley , Camus M. Florencia , Lane Nick
Published: September 2021

Mitochondrial function depends on direct interactions between respiratory proteins encoded by genes in two genomes, mitochondrial and nuclear, which evolve in very different ways. Serious incompatibilities between these genomes can have severe effects on development, fitness and viability. The effect of subtle mitonuclear mismatches has received less attention, especially when subject to mild physiological stress. Here, we investigate how two distinct physiological stresses, metabolic stress (high-protein diet) and redox stress [the glutathione precursor N-acetyl cysteine (NAC)], affect development time, egg-to-adult viability, and the mitochondrial physiology of Drosophila larvae with an isogenic nuclear background set against three mitochondrial DNA (mtDNA) haplotypes: one coevolved (WT) and two slightly mismatched (COX and BAR). Larvae fed the high-protein diet developed faster and had greater viability in all haplotypes. The opposite was true of NAC-fed flies, especially those with the COX haplotype. Unexpectedly, the slightly mismatched BAR larvae developed fastest and were the most viable on both treatments, as well as control diets. These changes in larval development were linked to a shift to complex I-driven mitochondrial respiration in all haplotypes on the high-protein diet. In contrast, NAC increased respiration in COX larvae but drove a shift toward oxidation of proline and succinate. The flux of reactive oxygen species was increased in COX larvae treated with NAC and was associated with an increase in mtDNA copy number. Our results support the notion that subtle mitonuclear mismatches can lead to diverging responses to mild physiological stress, undermining fitness in some cases, but surprisingly improving outcomes in other ostensibly mismatched fly lines.
Stimulus-Specific Expression, Selective Generation and Novel Function of Grass Carp (Ctenopharyngodon idella) IL-12 Isoforms: New Insights Into the Heterodimeric Cytokines in Teleosts
Authors: Qiu Xingyang , Sun Hao , Wang Dan , Ren Jingqi , Wang Xinyan , Zhang Anying , Yang Kun , Zhou Hong
Published: September 2021

Interleukin-12 (IL-12) is a heterodimeric cytokine composed of a p35 subunit specific to IL-12 and a p40 subunit shared with IL-23. In this study, we unveiled the existence of twop35paralogues in grass carp (namedgcp35aandgcp35b). Notably,gcp35aandgcp35bdisplayed distinct inducible expression patterns, as poly I:C merely induced the gene expression ofgcp35abut notgcp35b, while recombinant grass carp interferon-gamma (rgcIfn-γ) only enhanced the transcription ofgcp35bbut notgcp35a. Moreover, the signaling mechanisms responsible for the inducible expression ofgcp35aandgcp35bmRNA were elucidated. Because of the existence of three grass carpp40genes (gcp40a, gcp40bandgcp40c) and twop35paralogues, six gcIl-12 isoforms were predicted by 3D modeling. Results showed that gcp40a and gcp40b but not gcp40c had the potential for forming heterodimers with both gcp35 paraloguesviathe disulfide bonds. Non-reducing electrophoresis experiments further disclosed that only gcp40b but not gcp40a or gcp40c could form heterodimers with gcp35 to produce secretory heterodimeric gcp35a/gcp40b (gcIl-12AB) and gcp35b/gcp40b (gcIl-12BB), which prompted us to prepare their recombinant proteins. These two recombinant proteins exhibited their extensive regulation on Ifn-γ production in various immune cells. Intriguingly, both gcIl-12 isoforms significantly enhanced the transcription ofil-17a/f1andil-22in lymphocytes, and their regulation onil-17a/f1expression was mediated by Stat3/Rorγt signaling, supporting the potential of gcIl-12 isoforms for inducing Th17-like responses. Additionally, stimulatory effects of gcIl-12 isoforms onil-17a/f1andifn-γexpression were attenuated by gcTgf-β1viasuppressing the activation of Stat3 signaling, implying that their signaling could be manipulated. In brief, our works provide new insights into the inducible expression pattern, heterodimeric generation and functional novelty of Il-12 isoforms in teleosts.
Increased Monocyte-Derived CD11b+ Macrophage Subpopulations Following Cigarette Smoke Exposure Are Associated With Impaired Bleomycin-Induced Tissue Remodelling
Authors: Cass Steven P. , Mekhael Olivia , Thayaparan Danya , McGrath Joshua J. C. , Revill Spencer D. , Fantauzzi Matthew F. , Wang Peiyao , Reihani Amir , Hayat Aaron I. , Stevenson Christopher S. , Dvorkin-Gheva Anna , Botelho Fernando M. , Stämpfli Martin R. , Ask Kjetil
Published: September 2021

Rationale

The accumulation of macrophages in the airways and the pulmonary interstitium is a hallmark of cigarette smoke-associated inflammation. Notably, pulmonary macrophages are not a homogenous population but consist of several subpopulations. To date, the manner in which cigarette smoke exposure affects the relative composition and functional capacity of macrophage subpopulations has not been elucidated.

Methods

Using a whole-body cigarette smoke exposure system, we investigated the impact of cigarette smoke on macrophage subpopulations in C57BL/6 mice using flow cytometry-based approaches. Moreover, we used bromodeoxyuridine labelling plus Il1a-/- and Il1r1-/- mice to assess the relative contribution of local proliferation and monocyte recruitment to macrophage accumulation. To assess the functional consequences of altered macrophage subpopulations, we used a model of concurrent bleomycin-induced lung injury and cigarette smoke exposure to examine tissue remodelling processes.

Main Results

Cigarette smoke exposure altered the composition of pulmonary macrophages increasing CD11b+ subpopulations including monocyte-derived alveolar macrophages (Mo-AM) as well as interstitial macrophages (IM)1, -2 and -3. The increase in CD11b+ subpopulations was observed at multiple cigarette smoke exposure timepoints. Bromodeoxyuridine labelling and studies in Il1a-/- mice demonstrated that increased Mo-AM and IM3 turnover in the lungs of cigarette smoke-exposed mice was IL-1α dependent. Compositional changes in macrophage subpopulations were associated with impaired induction of fibrogenesis including decreased α-smooth muscle actin positive cells following intratracheal bleomycin treatment. Mechanistically, in vivo and ex vivo assays demonstrated predominant macrophage M1 polarisation and reduced matrix metallopeptidase 9 activity in cigarette smoke-exposed mice.

Conclusion

Cigarette smoke exposure modified the composition of pulmonary macrophage by expanding CD11b+ subpopulations. These compositional changes were associated with attenuated fibrogenesis, as well as predominant M1 polarisation and decreased fibrotic activity. Overall, these data suggest that cigarette smoke exposure altered the composition of pulmonary macrophage subpopulations contributing to impaired tissue remodelling.
Tumor-Associated Macrophages and Their Functional Transformation in the Hypoxic Tumor Microenvironment
Authors: He Zicong , Zhang Shuixing
Published: September 2021

Tumor-associated macrophages (TAMs) are some of the most abundant immune cells within tumors and perform a broad repertoire of functions via diverse phenotypes. On the basis of their functional differences in tumor growth, TAMs are usually categorized into two subsets of M1 and M2. It is well established that the tumor microenvironment (TME) is characterized by hypoxia along with tumor progression. TAMs adopt an M1-like pro-inflammatory phenotype at the early phases of oncogenesis and mediate immune response that inhibits tumor growth. As tumors progress, anabatic hypoxia of the TME gradually induces the M2-like functional transformation of TAMs by means of direct effects, metabolic influence, lactic acidosis, angiogenesis, remodeled stroma, and then urges them to participate in immunosuppression, angiogenesis and other tumor-supporting procedure. Therefore, thorough comprehension of internal mechanism of this TAM functional transformation in the hypoxic TME is of the essence, and might provide some novel insights in hypoxic tumor immunotherapeutic strategies.
The Mangrove Periwinkle Littoraria angulifera (Mollusca: Littorinidae) in the Urabá Gulf (Colombian Caribbean): Finding Ways in an Urbanizing Coast?
Authors: Ramos Jhostin , Boto Marco , Blanco-Libreros Juan Felipe , Riascos José M.
Published: September 2021

Periwinkles (Littorinidae: genus Littoraria) are one of the very few molluscan clades showing an adaptive radiation closely associated to the mangrove habitat. However, pervasive land use changes associated to urbanization is prompting mangrove loss or degradation, with unknown consequences for mangrove-associated fauna. In the southern Colombian Caribbean, mangrove ecosystems have been encroached by human settlements and different populations of Littoraria angulifera (Lamarck, 1822) now inhabit anthropogenic intertidal substrates in urban areas, but the demographic traits of populations thriving in these novel environments are unknown. We studied the relative abundance and size structure of L. angulifera in remnant mangrove patches, woody debris and anthropogenic substrates (boulder seawalls and built structures) in 13 locations throughout the Urabá Gulf, a human-transformed tropical estuarine system. The abundance of L. angulifera was up to two orders of magnitude higher in anthropogenic than in quasi-natural or natural substrates. Snails also displayed a significant preference for wave protected positions in boulder seawalls and built structures exposed to heavy wave action, which was not previously reported in mangrove forests. Moreover, snail populations in anthropogenic substrate were consistently dominated by individuals of small sizes in comparison with mangroves or driftwood. We argue that the anthropogenic disturbances caused by the expansion of Turbo city during nearly one century in a coast formerly dominated by mangrove forests are providing novel and expanding habitats, whose quality might be good enough as to support high-density populations of L. angulifera. However, we hypothesize that shifted thermal regimes in hard and novel wave-exposed urban seascapes might also be prompting behavioral adjustments and the selection of smaller size ranges than those observed in mangrove forests.
Seasonal Occurrence of Sympatric Blue Whale Subspecies: the Chilean and Southeast Indian Ocean Pygmy Blue Whales With the Antarctic Blue Whale
Authors: Truong Gary , Rogers Tracey L.
Published: September 2021

There are multiple blue whale acoustic populations found across the Southern Hemisphere. The different subspecies of blue whales feed in separate areas, but during their migration to lower-latitude breeding areas each year, Antarctic blue whales become sympatric with pygmy and Chilean blue whales. Few studies have compared the degree of this overlap of the Southern Hemisphere blue whale subspecies across ocean basins during their migration. Using up to 16 years of acoustic data, this study compares the broad seasonal presence of Antarctic blue whales, Chilean blue whales, and Southeast Indian Ocean (SEIO) pygmy blue whales across the Pacific and Indian Oceans. Antarctic blue whales were sympatric with the other two blue whale subspecies during the migrating season of every year. Despite this overlap, Chilean and pygmy blue whale detections peaked earlier during the austral autumn (April–May) while Antarctic blue whale detections peaked later during the austral winter (June). Chilean (Pacific Ocean) and SEIO (Indian Ocean) pygmy blue whales showed similar seasonal patterns in detections despite occurring in different ocean basins. Though we have shown that Antarctic blue whales have the potential to encounter other blue whale subspecies during the breeding season, these distinct groups have remained acoustically stable through time. Further understanding of where these whales migrate will enable a better insight as to how these subspecies continue to remain separate.
Assemblage Structure of the Ichthyoplankton and Its Relationship With Environmental Factors in Spring and Autumn off the Pearl River Estuary
Authors: Hou Gang , Wang Jinrun , Liu Limei , Chen Yanying , Pan Chuanhao , Lin Jianbin , Zhang Hui
Published: September 2021

Ichthyoplankton assemblages and their relationship with environmental variables are investigated in waters off the Pearl River Estuary in spring and autumn of 2019. Of 80 ichthyoplankton taxa identified using DNA barcode and morphological methods, 61 are identified to species. The most abundance families (Carangidae, Trichiuridae, Mullidae, and Scombridae) account for 61.34% of the horizontal total catch in spring, while Menidae and Carangidae are the most abundant families identified in autumn, accounting for 89.72% of the horizontal total catch. Cluster analysis identifies three species assemblages in spring, and four in autumn based on horizontal trawls. Relationships between assemblage structure and environmental variables (in situand remote sensed) are determined by canonical correspondence analysis. Ichthyoplankton assemblage structure appears to be strongly influenced by sea level anomalies, salinity, water depth, temperature at 10 m depth, and distance from shore. We demonstrate the efficacy of using DNA barcode to identify ichthyoplankton, and suggest how these data can be used to protect fish spawning grounds in waters off the Pearl River Estuary.
Endoscopic Endoluminal Radiofrequency Ablation and Single-Operator Peroral Cholangioscopy System (SpyGlass) in the Diagnosis and Treatment of Intraductal Papillary Neoplasm of the Bile Duct: A Case Report and Literature Review
Authors: Tang Wei , Qiu Jian-Guo , Wei Xu-Fu , Xiao Heng , Deng Xin , Wang Shao-Dong , Du Cheng-You , Wu Qiao
Published: September 2021

Background: Intraductal papillary neoplasm of the bile duct (IPNB) is a rare biliary benign tumor with atypical clinical features and is frequently misdiagnosed. Its treatment is limited and surgical resection is thought to be the only therapeutic option in patients with IPNB. With the aim of increasing the early diagnosis rate of IPNB and providing more therapeutic options for surgeons, we innovatively put forward the concept of combined utilization of SpyGlass and endoscopic endoluminal radiofrequency ablation (ERFA) in the diagnosis and treatment of IPNB.

Case Presentation: An 85-year-old woman was referred to our hospital due to right upper quadrant abdominal pain. The image examinations indicated suspicious filling defects at the upper common bile duct. Further evaluation of SpyGlass cholangioscopy showed multiple reddish villous lesions at the left hepatic duct, and SpyBite biopsy under direct visualization demonstrated papillary low-grade dysplasia. In consideration of the advanced age and preference of the patient, the novel ERFA therapy was performed. The procedure was successful without periprocedural complications; the patient recovered uneventfully and was discharged 2 days after the operation. Upon follow-up, the patient was asymptomatic and in good physical condition at 8 months postoperatively.

Conclusion: Preliminarily, we demonstrate that the strategy of a combination of SpyGlass and ERAF seems to be a promising, feasible, well-tolerated, and safe management for patients with IPNB. However, more data with larger patient volumes are needed to evaluate its outcomes further.
Circular RNAs as Novel Diagnostic Biomarkers and Therapeutic Targets in Kidney Disease
Authors: Yu Jianwen , Xie Danli , Huang Naya , Zhou Qin
Published: September 2021

Circular RNAs (circRNAs) are a novel type of non-coding RNAs that have aroused growing attention in this decade. They are widely expressed in eukaryotes and generally have high stability owing to their special closed-loop structure. Many circRNAs are abundant, evolutionarily conserved, and exhibit cell-type-specific and tissue-specific expression patterns. Mounting evidence suggests that circRNAs have regulatory potency for gene expression by acting as microRNA sponges, interacting with proteins, regulating transcription, or directly undergoing translation. Dysregulated expression of circRNAs were found in many pathological conditions and contribute to the pathogenesis and progression of various disorders, including renal diseases. Recent studies have revealed that circRNAs may serve as novel reliable biomarkers for the diagnosis and prognosis prediction of multiple kidney diseases, such as renal cell carcinoma (RCC), acute kidney injury (AKI), diabetic kidney disease (DKD), and other glomerular diseases. Furthermore, circRNAs expressed by intrinsic kidney cells are shown to play a substantial role in kidney injury, mostly reported in DKD and RCC. Herein, we review the biogenesis and biological functions of circRNAs, and summarize their roles as promising biomarkers and therapeutic targets in common kidney diseases.
Overview of the Diversity, Phylogeny and Biogeography of Strombidiid Oligotrich Ciliates (Protista, Ciliophora), With a Brief Revision and a Key to the Known Genera
Authors: Song Wen , Xu Dapeng , Chen Xiao , Warren Alan , Shin Mann Kyoon , Song Weibo , Li Lifang
Published: September 2021

Strombidiids are common free-living ciliates that have colonized coastal and open oceanic waters across the world. In recent years, numerous new taxa and gene sequences of strombidiids have been reported, revealing a large diversity of both their morphologic and genetic features. Here, we compare the taxonomic characters of all genera in the family Strombidiidae, provide a key to their identification, and investigate their molecular phylogeny. In addition, we analyze their regional distribution based on faunal data accumulated in China and attempt to infer their global distribution based on SSU rRNA gene sequence data. The current work revises the systematics of strombidiids based on morphologic, phylogenetic, and biogeographic evidence and provides a genus-level review of marine strombidiids.
Black Soldier Fly (Hermetia illucens) Larvae Meal Modulates Intestinal Morphology and Microbiota in Xuefeng Black-Bone Chickens
Authors: He Changqing , Lei Jiaxing , Yao Yaling , Qu Xiangyong , Chen Jifa , Xie Kailai , Wang Xingju , Yi Qi , Xiao Bing , Guo Songchang , Zou Xiaoyan
Published: September 2021

The addition of Hermetia illucens larvae meal (HILM) to the feed could contribute to particular antimicrobial and intestinal health in animal husbandry. This study was conducted to investigate the effects of HILM on intestinal morphology and microbial diversity in different intestinal segments of Xuefeng black-bone chickens. All of 432 birds (45 weeks old) were randomly assigned to four equal groups with six replicates and 18 hens in each replicate: (A) basal diet, (B) basal diet with 1% HILM, (C) basal diet with 3% HILM, and (D) basal diet with 5% HILM. The results showed that, compared with the basal diet group, the HILM supplement significantly increased the abundance-based coverage estimator (ACE) and Chao index in cecum (p < 0.05). Diet with 1% HILM significantly increased the villus height (VH) of the duodenum (p < 0.05) and cecum microbial diversity as represented by the Simpson index (p < 0.05). In particular, 1% HILM displayed a markedly increase in the genus unclassified Bacteroidales (cecum, p < 0.05). A basal diet with 3% HILM markedly increased the beneficial genus Romboutsia (jejunum, p < 0.05). Also, principal component analysis (PCA) cluster analysis showed that 3% of HILM was more individual than other groups (p < 0.05). However, 5% HILM decreased the VH and the ratio of villus height to crypt depth (VH/CD) of the jejunum and increased beneficial bacteria such as Staphylococcus (p < 0.05), which was regarded as pathogenetic genera. In conclusion, we found that HILM improved intestinal morphology and increased microbiological diversity and species abundance. Together, dietary supplementation of 1 or 3% HILM might benefit the intestinal morphology and intestinal microbiota of Xuefeng black-bone chicken. However, the addition of 5% HILM could decrease VH and the ratio of VH/CD of the jejunum and increased pathogenetic genera. HILM was an excellent protein substitute for Xuefeng black-bone chickens, which could meet the nutritional requirements under the condition of less feed. These results provide information for HILM meal as an alternative source of soybean meal in Xuefeng black-bone chickens’ feed.
Aptasensors for Staphylococcus aureus Risk Assessment in Food
Authors: Huang Ziqian , Yu Xin , Yang Qingli , Zhao Ying , Wu Wei
Published: September 2021

Staphylococcus aureus (S. aureus) is the top ordinary pathogen causing epidemic and food poisoning. The authentication of S. aureus has great significance for pathologic diagnosis and food hygiene supervision. Various biosensor methods have been established for identification. This paper reviews the research progress of aptasensors for S. aureus detection, focusing on the classification of aptamer technologies, including optical aptasensors and electrochemical aptasensors. Furthermore, the feasibility and future challenges of S. aureus detection for aptamer assays are discussed. Combining aptasensors with nanomaterials appears to be the developing trend in aptasensors.
The Hepatitis B Virus Interactome: A Comprehensive Overview
Authors: Van Damme Ellen , Vanhove Jolien , Severyn Bryan , Verschueren Lore , Pauwels Frederik
Published: September 2021

Despite the availability of a prophylactic vaccine, chronic hepatitis B (CHB) caused by the hepatitis B virus (HBV) is a major health problem affecting an estimated 292 million people globally. Current therapeutic goals are to achieve functional cure characterized by HBsAg seroclearance and the absence of HBV-DNA after treatment cessation. However, at present, functional cure is thought to be complicated due to the presence of covalently closed circular DNA (cccDNA) and integrated HBV-DNA. Even if the episomal cccDNA is silenced or eliminated, it remains unclear how important the high level of HBsAg that is expressed from integrated HBV DNA is for the pathology. To identify therapies that could bring about high rates of functional cure, in-depth knowledge of the virus’ biology is imperative to pinpoint mechanisms for novel therapeutic targets. The viral proteins and the episomal cccDNA are considered integral for the control and maintenance of the HBV life cycle and through direct interaction with the host proteome they help create the most optimal environment for the virus whilst avoiding immune detection. New HBV-host protein interactions are continuously being identified. Unfortunately, a compendium of the most recent information is lacking and an interactome is unavailable. This article provides a comprehensive review of the virus-host relationship from viral entry to release, as well as an interactome of cccDNA, HBc, and HBx.
Genome-Wide Transcriptional Changes of Rhodosporidium kratochvilovae at Low Temperature
Authors: Guo Rui , He Meixia , Zhang Xiaoqing , Ji Xiuling , Wei Yunlin , Zhang Qi-Lin , Zhang Qi
Published: September 2021

Rhodosporidium kratochvilovae strain YM25235 is a cold-adapted oleaginous yeast strain that can grow at 15°C. It is capable of producing polyunsaturated fatty acids. Here, we used the Nanopore Platform to first assemble the R. kratochvilovae strain YM25235 genome into a 23.71 Mb size containing 46 scaffolds and 8,472 predicted genes. To explore the molecular mechanism behind the low temperature response of R. kratochvilovae strain YM25235, we analyzed the RNA transcriptomic data from low temperature (15°C) and normal temperature (30°C) groups using the next-generation deep sequencing technology (RNA-seq). We identified 1,300 differentially expressed genes (DEGs) by comparing the cultures grown at low temperature (15°C) and normal temperature (30°C) transcriptome libraries, including 553 significantly upregulated and 747 significantly downregulated DEGs. Gene ontology and pathway enrichment analysis revealed that DEGs were primarily related to metabolic processes, cellular processes, cellular organelles, and catalytic activity, whereas the overrepresented pathways included the MAPK signaling pathway, metabolic pathways, and amino sugar and nucleotide sugar metabolism. We validated the RNA-seq results by detecting the expression of 15 DEGs using qPCR. This study provides valuable information on the low temperature response of R. kratochvilovae strain YM25235 for further research and broadens our understanding for the response of R. kratochvilovae strain YM25235 to low temperature.
Isolation, Identification, and Antibacterial Mechanisms of Bacillus amyloliquefaciens QSB-6 and Its Effect on Plant Roots
Authors: Duan Yanan , Chen Ran , Zhang Rong , Jiang Weitao , Chen Xuesen , Yin Chengmiao , Mao Zhiquan
Published: September 2021

Apple replant disease (ARD) is a common problem in major apple planting areas, and biological factors play a leading role in its etiology. Here, we isolated the bacterial strain QSB-6 from the rhizosphere soil of healthy apple trees in a replanted orchard using the serial dilution method. Strain QSB-6 was provisionally identified as Bacillus amyloliquefaciens based on its morphology, physiological and biochemical characteristics, carbon source utilization, and chemical sensitivity. Maximum likelihood analysis based on four gene sequences [16S ribosomal RNA gene (16S rDNA), DNA gyrase subunit A (gyrA), DNA gyrase subunit B (gyrB), and RNA polymerase subunit B (rpoB)] from QSB-6 and other strains indicated that it had 100% homology with B. amyloliquefaciens, thereby confirming its identification. Flat standoff tests showed that strain QSB-6 had a strong inhibitory effect on Fusarium proliferatum, Fusarium solani, Fusarium verticillioides, Fusarium oxysporum, Alternaria alternata, Aspergillus flavus, Phoma sp., Valsa mali, Rhizoctonia solani, Penicillium brasilianum, and Albifimbria verrucaria, and it had broad-spectrum antibacterial characteristics. Extracellular metabolites from strain QSB-6 showed a strong inhibitory effect on Fusarium hyphal growth and spore germination, causing irregular swelling, atrophy, rupture, and cytoplasmic leakage of fungal hyphae. Analysis of its metabolites showed that 1,2-benzenedicarboxylic acid and benzeneacetic acid, 3- hydroxy-, methyl ester had good inhibitory effects on Fusarium, and increased the length of primary roots and the number of lateral roots of Arabidopsis thaliana plantlet. Pot experiments demonstrated that a QSB-6 bacterial fertilizer treatment (T2) significantly improved the growth of Malus hupehensis Rehd. seedlings. It increased root length, surface area, tips, and forks, respiration rate, protective enzyme activities, and the number of soil bacteria while reducing the number of soil fungi. Fermentation broth from strain QSB-6 effectively prevented root damage from Fusarium. terminal restriction fragment length polymorphism (T-RFLP) and quantitative PCR (qPCR) assays showed that the T2 treatment significantly reduced the abundance of Fusarium in the soil and altered the soil fungal community structure. In summary, B. amyloliquefaciens QSB-6 has a good inhibitory effect on Fusarium in the soil and can significantly promote plant root growth. It has great potential as a biological control agent against ARD.
A Multimodal Risk Network Predicts Executive Function Trajectories in Non-demented Aging
Authors: Sapkota Shraddha , McFall G. Peggy , Masellis Mario , Dixon Roger A.
Published: September 2021

Background: Multiple modalities of Alzheimer’s disease (AD) risk factors may operate through interacting networks to predict differential cognitive trajectories in asymptomatic aging. We test such a network in a series of three analytic steps. First, we test independent associations between three risk scores (functional-health, lifestyle-reserve, and a combined multimodal risk score) and cognitive [executive function (EF)] trajectories. Second, we test whether all three associations are moderated by the most penetrant AD genetic risk [Apolipoprotein E (APOE) ε4+ allele]. Third, we test whether a non-APOE AD genetic risk score further moderates these APOE × multimodal risk score associations.

Methods: We assembled a longitudinal data set (spanning a 40-year band of aging, 53–95 years) with non-demented older adults (baseline n = 602; Mage = 70.63(8.70) years; 66% female) from the Victoria Longitudinal Study (VLS). The measures included for each modifiable risk score were: (1) functional-health [pulse pressure (PP), grip strength, and body mass index], (2) lifestyle-reserve (physical, social, cognitive-integrative, cognitive-novel activities, and education), and (3) the combination of functional-health and lifestyle-reserve risk scores. Two AD genetic risk markers included (1) APOE and (2) a combined AD-genetic risk score (AD-GRS) comprised of three single nucleotide polymorphisms (SNPs; Clusterin[rs11136000], Complement receptor 1[rs6656401], Phosphatidylinositol binding clathrin assembly protein[rs3851179]). The analytics included confirmatory factor analysis (CFA), longitudinal invariance testing, and latent growth curve modeling. Structural path analyses were deployed to test and compare prediction models for EF performance and change.

Results: First, separate analyses showed that higher functional-health risk scores, lifestyle-reserve risk scores, and the combined score, predicted poorer EF performance and steeper decline. Second, APOE and AD-GRS moderated the association between functional-health risk score and the combined risk score, on EF performance and change. Specifically, only older adults in the APOEε4− group showed steeper EF decline with high risk scores on both functional-health and combined risk score. Both associations were further magnified for adults with high AD-GRS.

Conclusion: The present multimodal AD risk network approach incorporated both modifiable and genetic risk scores to predict EF trajectories. The results add an additional degree of precision to risk profile calculations for asymptomatic aging populations.
Innate Immune System Activation and Neuroinflammation in Down Syndrome and Neurodegeneration: Therapeutic Targets or Partners?
Authors: Ahmed Md. Mahiuddin , Johnson Noah R. , Boyd Timothy D. , Coughlan Christina , Chial Heidi J. , Potter Huntington
Published: September 2021

Innate immune system activation and inflammation are associated with and may contribute to clinical outcomes in people with Down syndrome (DS), neurodegenerative diseases such as Alzheimer’s disease (AD), and normal aging. In addition to serving as potential diagnostic biomarkers, innate immune system activation and inflammation may play a contributing or causal role in these conditions, leading to the hypothesis that effective therapies should seek to dampen their effects. However, recent intervention studies with the innate immune system activator granulocyte-macrophage colony-stimulating factor (GM-CSF) in animal models of DS, AD, and normal aging, and in an AD clinical trial suggest that activating the innate immune system and inflammation may instead be therapeutic. We consider evidence that DS, AD, and normal aging are accompanied by innate immune system activation and inflammation and discuss whether and when during the disease process it may be therapeutically beneficial to suppress or promote such activation.
Nanotechnology in Colorectal Cancer for Precision Diagnosis and Therapy
Authors: Brar Basanti , Ranjan Koushlesh , Palria Ankur , Kumar Rajesh , Ghosh Mayukh , Sihag Sweety , Minakshi Prasad
Published: September 2021

Colorectal cancer (CRC) is the third most frequently occurring tumor in the human population. CRCs are usually adenocarcinomatous and originate as a polyp on the inner wall of the colon or rectum which may become malignant in the due course of time. Although the therapeutic options of CRC are limited, the early diagnosis of CRC may play an important role in preventive and therapeutic interventions to decrease the mortality rate. The CRC-affected tissues exhibit several molecular markers that may be exploited as the novel strategy to develop newer approaches for the treatment of the disease. Nanotechnology consists of a wide array of innovative and astonishing nanomaterials with both diagnostics and therapeutic potential. Several nanomaterials and nano formulations such as Carbon nanotubes, Dendrimer, Liposomes, Silica Nanoparticles, Gold nanoparticles, Metal-organic frameworks, Core-shell polymeric nano-formulations, Nano-emulsion System, etc can be used to targeted anticancer drug delivery and diagnostic purposes in CRC. The light-sensitive photosensitizer drugs loaded gold and silica nanoparticles can be used to diagnose as well as the killing of CRC cells by the targeted delivery of anticancer drugs to cancer cells. This review is focused on the recent advancement of nanotechnology in the diagnosis and treatment of CRC.