bluuebunny/crossref_metadata_2025 huggingface dataset:
Retrial BMAP/PH/N Queueing System with a Threshold-Dependent Inter-Retrial Time Distribution
Authors: Klimenok Valentina , Dudin Alexander , Vishnevsky Vladimir , Semenova Olga
Published: January 2022

In this paper, we study a multi-server queueing system with retrials and an infinite orbit. The arrival of primary customers is described by a batch Markovian arrival process (BMAP), and the service times have a phase-type (PH) distribution. Previously, in the literature, such a system was mainly considered under the strict assumption that the intervals between the repeated attempts from the orbit have an exponential distribution. Only a few publications dealt with retrial queueing systems with non-exponential inter-retrial times. These publications assumed either the rate of retrials is constant regardless of the number of customers in the orbit or this rate is constant when the number of orbital customers exceeds a certain threshold. Such assumptions essentially simplify the mathematical analysis of the system, but do not reflect the nature of the majority of real-life retrial processes. The main feature of the model under study is that we considered the classical retrial strategy under which the retrial rate is proportional to the number of orbital customers. However, in this case, the assumption of the non-exponential distribution of inter-retrial times leads to insurmountable computational difficulties. To overcome these difficulties, we supposed that inter-retrial times have a phase-type distribution if the number of customers in the orbit is less than or equal to some non-negative integer (threshold) and have an exponential distribution in the contrary case. By appropriately choosing the threshold, one can obtain a sufficiently accurate approximation of the system with a PH distribution of the inter-retrial times. Thus, the model under study takes into account the realistic nature of the retrial process and, at the same time, does not resort to restrictions such as a constant retrial rate or to rough truncation methods often applied to the analysis of retrial queueing systems with an infinite orbit. We describe the behavior of the system by a multi-dimensional Markov chain, derive the stability condition, and calculate the steady-state distribution and the main performance indicators of the system. We made sure numerically that there was a reasonable value of the threshold under which our model can be served as a good approximation of the BMAP/PH/N queueing system with the PH distribution of inter-retrial times. We also numerically compared the system under consideration with the corresponding queueing system having exponentially distributed inter-retrial times and saw that the latter is a poor approximation of the system with the PH distribution of inter-retrial times. We present a number of illustrative numerical examples to analyze the behavior of the system performance indicators depending on the system parameters, the variance of inter-retrial times, and the correlation in the input flow.
Single Image Super-Resolution with Arbitrary Magnification Based on High-Frequency Attention Network
Authors: Yun Jun-Seok , Yoo Seok-Bong
Published: January 2022

Among various developments in the field of computer vision, single image super-resolution of images is one of the most essential tasks. However, compared to the integer magnification model for super-resolution, research on arbitrary magnification has been overlooked. In addition, the importance of single image super-resolution at arbitrary magnification is emphasized for tasks such as object recognition and satellite image magnification. In this study, we propose a model that performs arbitrary magnification while retaining the advantages of integer magnification. The proposed model extends the integer magnification image to the target magnification in the discrete cosine transform (DCT) spectral domain. The broadening of the DCT spectral domain results in a lack of high-frequency components. To solve this problem, we propose a high-frequency attention network for arbitrary magnification so that high-frequency information can be restored. In addition, only high-frequency components are extracted from the image with a mask generated by a hyperparameter in the DCT domain. Therefore, the high-frequency components that have a substantial impact on image quality are recovered by this procedure. The proposed framework achieves the performance of an integer magnification and correctly retrieves the high-frequency components lost between the arbitrary magnifications. We experimentally validated our model’s superiority over state-of-the-art models.
Isolation and Characterization of a Yellow Xanthophyll Pigment-Producing Marine Bacterium, Erythrobacter sp. SDW2 Strain, in Coastal Seawater
Authors: Jeong Sun Wook , Yang Jung Eun , Choi Yong Jun
Published: January 2022

Xanthophylls, a yellow pigment belonging to the carotenoid family, have attracted much attention for industrial applications due to their versatile nature. We report the isolation of a homo xanthophyll pigment-producing marine bacterium, identified as the Erythrobacter sp. SDW2 strain, from coastal seawater. The isolated Erythrobacter sp. SDW2 strain can produce 263 ± 12.9 mg/L (89.7 ± 5.4 mg/g dry cell weight) of yellow xanthophyll pigment from 5 g/L of glucose. Moreover, the xanthophyll pigment produced by the SDW2 strain exhibits remarkable antioxidative activities, confirmed by the DPPH (73.4 ± 1.4%) and ABTS (84.9 ± 0.7%) assays. These results suggest that the yellow xanthophyll pigment-producing Erythrobacter sp. SDW2 strain could be a promising industrial microorganism for producing marine-derived bioactive compounds with potential for foods, cosmetics, and pharmaceuticals.
Actinoporin-like Proteins Are Widely Distributed in the Phylum Porifera
Authors: Sandoval Kenneth , McCormack Grace P.
Published: January 2022

Actinoporins are proteinaceous toxins known for their ability to bind to and create pores in cellular membranes. This quality has generated interest in their potential use as new tools, such as therapeutic immunotoxins. Isolated historically from sea anemones, genes encoding for similar actinoporin-like proteins have since been found in a small number of other animal phyla. Sequencing and de novo assembly of Irish Haliclona transcriptomes indicated that sponges also possess similar genes. An exhaustive analysis of publicly available sequencing data from other sponges showed that this is a potentially widespread feature of the Porifera. While many sponge proteins possess a sequence similarity of 27.70–59.06% to actinoporins, they show consistency in predicted structure. One gene copy from H. indistincta has significant sequence similarity to sea anemone actinoporins and possesses conserved residues associated with the fundamental roles of sphingomyelin recognition, membrane attachment, oligomerization, and pore formation, indicating that it may be an actinoporin. Phylogenetic analyses indicate frequent gene duplication, no distinct clade for sponge-derived proteins, and a stronger signal towards actinoporins than similar proteins from other phyla. Overall, this study provides evidence that a diverse array of Porifera represents a novel source of actinoporin-like proteins which may have biotechnological and pharmaceutical applications.
Necrotizing Fasciitis of the Thigh as Unusual Colonoscopic Polypectomy Complication: Review of the Literature with Case Presentation
Authors: Sablone Sara , Lagouvardou Elpiniki , Cazzato Gerardo , Carravetta Francesco , Maselli Roberto , Merlanti Francesco , Bavaro Davide Fiore , De Donno Antonio , Introna Francesco , Caputi Iambrenghi Onofrio
Published: January 2022

Necrotizing fasciitis (NF) is an infection characterized by necrosis of the superficial muscle fascia and surrounding soft tissues. It usually occurs following skin breaches from penetrating traumas or high-degree burns. Less frequently, it could be related to major abdominal surgery. However, no cases of thigh NF after minor abdominal procedures have ever been reported. A previously healthy 59-year-old male patient underwent a colonoscopic polypectomy. After the procedure, the patient developed an increasing right groin pain. The CT scan showed a gas collection in the right retroperitoneum space and in the right thigh soft tissues. Thus, a right colon perforation was hypothesized, and the patient was moved to the nearest surgery department and underwent a right hemicolectomy procedure. During surgery, the right thigh was also incised and drained, with gas and pus leakage. Nevertheless, the right lower limb continued to swell, and signs of systemic infection appeared. Afterward, clinical conditions continued to worsen despite the drainage of the thigh and antibiotic therapy, and the patient died of septic shock after just two days. This case shows that, although rare, lower limb NF should be considered among the causes of early post-operative local painful symptoms.
Longitudinal Cognitive Assessment in Low-Risk Very Preterm Infants
Authors: Romeo Domenico M. , Ricci Martina , Mirra Federica , Venezia Ilaria , Mallardi Maria , Pede Elisa , Mercuri Eugenio
Published: January 2022

Background and Objectives: Preterm infants are at higher risk of neurodevelopmental impairment both at preschool and school ages, even in the absence of major neurological deficits. The early identification of children at risk is essential for early intervention with rehabilitation to optimize potential outcomes during school years. The aim of our study is to assess cognitive outcomes at preschool age in a cohort of low-risk very preterm infants, previously studied at 12 and 24 months using the Griffiths scales. Materials and Methods: Sixty-six low-risk very preterm infants born at a gestational age of <32 weeks were assessed at 12 and 24 months corrected age using the Griffiths Mental Development Scales (second edition) and at preschool age with the Wechsler Preschool and Primary Scales of Intelligence (third edition) (WPPSI-III). Results: At 12 and 24 months and at preschool age, low-risk very preterm infants showed scores within normal ranges with similar scores in males and females. A statistically significant correlation was observed in the general developmental quotient between 12 and 24 months; a further significant correlation was observed between the early cognitive assessments and those performed at preschool age, with a better correlation using the assessments at 24 months. Conclusion: The present study showed a favourable trajectory of cognitive development in low-risk very preterm infants, from 12 months to preschool age.
Duodenal Ulcer with Massive Gastrointestinal Hemorrhage as an Initial Manifestation in Multiple Myeloma with Extramedullary Disease: A Case Report
Authors: Chiu Hao-Tse , Chen Po-Huang , Yen Hao , Chen Chao-Yang , Yang Chih-Wei , Liu Yu-Hong , Hsieh Wu-Feng , Chou Shih-Hao , Pu Ta-Wei
Published: January 2022

Plasma cell neoplasms are characterized by dysregulated proliferation of mature B cells, which can present with either single (solitary plasmacytoma) or systemic (multiple myeloma (MM)) involvement. MM with extramedullary plasmacytoma (EMP) is a rare disease that accounts for approximately 3–5% of all plasmacytomas. EMP with gastrointestinal (GI) system involvement is an even rarer entity, accounting for <1% of MM cases. We present a case of aggressive MM with EMP invading the duodenum, initially presented with massive upper GI hemorrhage and small bowel obstruction. A 67-year-old woman was admitted to our hospital owing to a lack of either gas or feces passage for 3 days. Abdominal distention and vomit with a high coffee ground content were observed for 24 h. The patient’s condition was initially diagnosed as small bowel obstruction, upper gastrointestinal bleeding, severe anemia, acute renal failure, and hypercalcemia. Furthermore, an analysis of immunoelectrophoresis in the blood, bone marrow aspiration, and tissue biopsy supported the diagnosis of MM and EMP invading the duodenum, upper GI hemorrhage, and small bowel obstruction. Our study provided the possible involvement of MM and EMP in the differential diagnosis of patients with unexplained GI hemorrhage and small bowel obstruction. A thorough review of the literature regarding the association between MM, GI hemorrhage, and small bowel obstruction is presented in this study.
On the Potential of a Poly(vinylidenefluoride-co-hexafluoropropylene) Polymer Inclusion Membrane Containing Aliquat® 336 and Dibutyl Phthalate for V(V) Extraction from Sulfate Solutions
Authors: Bahrami Salar , Dolatyari Leila , Shayani-Jam Hassan , Yaftian Mohammad Reza , Kolev Spas D.
Published: January 2022

A polymer inclusion membrane (PIM) composed of 50 wt% base polymer poly(vinylidenefluoride-co-hexafluoropropylene), 40 wt% extractant Aliquat® 336, and 10 wt% dibutyl phthalate as plasticizer/modifier provided the efficient extraction of vanadium(V) (initial concentration 50 mg L−1) from 0.1 M sulfate solutions (pH 2.5). The average mass and thickness of the PIMs (diameter 3.5 cm) were 0.057 g and 46 μm, respectively. It was suggested that V(V) was extracted as VO2SO4− via an anion exchange mechanism. The maximum PIM capacity was estimated to be ~56 mg of V(V)/g for the PIM. Quantitative back-extraction was achieved with a 50 mL solution of 6 M H2SO4/1 v/v% of H2O2. It was assumed that the back-extraction process involved the oxidation of VO2+ to VO(O2)+ by H2O2. The newly developed PIM, with the optimized composition mentioned above, exhibited an excellent selectivity for V(V) in the presence of metallic species present in digests of spent alumina hydrodesulfurization catalysts. Co-extraction of Mo(VI) with V(V) was eliminated by its selective extraction at pH 1.1. Characterization of the optimized PIM was performed by contact angle measurements, atomic-force microscopy, energy dispersive X-ray spectroscopy, thermogravimetric analysis/derivatives thermogravimetric analysis and stress–strain measurements. Replacement of dibutyl phthalate with 2-nitrophenyloctyl ether improved the stability of the studied PIMs.
New Membrane-Forming Aromatic Co-Poly(amide-imide)s: Influence of the Chemical Structure on the Morphological, Thermal and Transport Properties
Authors: Kononova Svetlana V. , Kuznetsov Danila A. , Gubanova Galina N. , Kruchinina Elena V. , Volkov Anatoly Ya. , Vylegzhanina Milana E. , Vlasova Elena N. , Volchek Boris Z.
Published: January 2022

Polymer film membranes are used to solve specific separation problems that dictate structural requirements. Structural and morphological parameters of film membranes based on glassy polyheteroarylenes can be controlled in the process of preparation from solutions that opens up prospects for obtaining structured membranes required for targeted separation. In the case of aromatic poly(amide-imide)s, the possibility of controlling film formation and structure virtually has not been studied. In the present work, a series of homologous co-poly(amide-imide)s differing in the number of repeating units with carboxyl-substituted aromatic fragments was synthesized by polycondensation. Comparative analysis of the processes of formation of membranes with different morphologies based on these polymers under equal conditions was performed. New information was obtained about the influence of the amounts of carboxyl groups and the residual solvent on structural properties of asymmetric membranes. The influence of these factors on transport properties of dense membranes under pervaporation conditions was studied. It was demonstrated that in the case of carboxyl-containing poly(amide-imide)s, the domains formed during film preparation had a significant effect on membrane properties.
Optimal Water Backwashing Condition in Combined Water Treatment of Alumina Microfiltration and PP Beads
Authors: Cho Hyungmin , Yoon Gihoon , Kim Minjae , Park Jin Yong
Published: January 2022

Membrane fouling is a dominant limit of the membrane separation process. In this research, the optimal water backwashing to solve the membrane fouling problem was investigated in the combined water treatment process of alumina MF and pure polypropylene (PP) beads. Additionally, the influence of membrane shape (tubular or seven channel) was examined, depending on the water backwashing period. The optimal backwashing time (BT) could be 20 s in the combined water treatment process, because of the highest total treated volume (VT) in our BT 6–30 s conditions. The optimal backwashing period (BP) could be 6 min, because of the minimum membrane fouling and the maximum VT in the combined process of tubular alumina MF and PP beads. The resistance of reversible membrane fouling (Rrf) showed a major resistance of total membrane fouling, and that of irreversible membrane fouling (Rif) was a minor one, in the combined process using tubular or seven channel MF. The Rif showed a decreasing trend obviously, as decreasing BT from NBW to 2 min for seven channel MF. It means that the more frequent water backwashing could be more effective to control the membrane fouling, especially irreversible fouling, for seven channel membranes than tubular membranes.
Real-Time Monitoring of HT-PEMFC
Authors: Lee Chi-Yuan , Weng Fang-Bor , Yang Chin-Yuan , Chiu Chun-Wei , Nawale Shubham-Manoj
Published: January 2022

During the electrochemical reaction of a high temperature proton exchange membrane fuel cell (HT-PEMFC), (in this paper HT-PEMFC means operating in the range of 120 to 200 °C) the inhomogeneity of temperature, flow rate, and pressure in the interior is likely to cause the reduction of ion conductivity or thermal stability weight loss of proton exchange membrane materials, and it is additionally likely to cause uneven fuel distribution, thereby affecting the working performance and service life of the HT-PEMFC. This study used micro-electro-mechanical systems (MEMS) technology to develop a flexible three-in-one microsensor which is resistant to high temperature electrochemical environments; we selected appropriate materials and process parameters to protect the microsensor from failure or damage under long-term tests. The proposed method can monitor the local temperature, flow rate, and pressure distribution in HT-PEMFC in real time.
Manufacture of Defined Residual Stress Distributions in the Friction-Spinning Process: Investigations and Run-to-Run Predictive Control
Authors: Dahms Frederik , Homberg Werner
Published: January 2022

Friction-spinning as an innovative incremental forming process enables high degrees of deformation in the field of tube and sheet metal forming due to self-induced heat generation in the forming area. The complex thermomechanical conditions generate non-uniform residual stress distributions. In order to specifically adjust these residual stress distributions, the influence of different process parameters on residual stress distributions in flanges formed by the friction-spinning of tubes is investigated using the design of experiments (DoE) method. The feed rate with an effect of −156 MPa/mm is the dominating control parameter for residual stress depth distribution in steel flange forming, whereas the rotation speed of the workpiece with an effect of 18 MPa/mm dominates the gradient of residual stress generation in the aluminium flange-forming process. A run-to-run predictive control system for the specific adjustment of residual stress distributions is proposed and validated. The predictive model provides an initial solution in the form of a parameter set, and the controlled feedback iteratively approaches the target value with new parameter sets recalculated on the basis of the deviation of the previous run. Residual stress measurements are carried out using the hole-drilling method and X-ray diffraction by the cosα-method.
Evaluation and Optimization of a Cross-Rib Micro-Channel Heat Sink
Authors: Chen Haiying , Chen Chuan , Zhou Yunyan , Yang Chenglin , Song Gang , Hou Fengze , Jiao Binbin , Liu Ruiwen
Published: January 2022

This article presents a novel cross-rib micro-channel (MC-CR) heat sink to make fluid self-rotate. For a thermal test chip (TTC) with 100 w/cm2, the cross-ribs micro-channel were compared with the rectangular (MC-R) and horizontal rib micro-channel (MC-HR) heat sinks. The results show that, with the cross-rib micro-channel, the junction temperature of the thermal test chip was 336.49 K, and the pressure drop was 22 kPa. Compared with the rectangular and horizontal ribs heat sink, the cross-rib micro-channel had improvements of 28.6% and 14.3% in cooling capability, but the pressure drop increased by 10.7-fold and 5.5-fold, respectively. Then, the effects of the aspect ratio (λ) of micro-channel in different flow rates were studied. It was found that the aspect ratio and cooling performance were non-linear. To reduce the pressure drop, the inclination (α) and spacing (S) of the cross-ribs were optimized. When α = 30°, S = 0.1 mm, and λ = 4, the pressure drop was reduced from 22 kPa to 4.5 kPa. In addition, the heat dissipation performance of the rectangular, staggered fin (MC-SF), staggered rib (MC-SR) and cross-rib micro-channels were analyzed in the condition of the same pressure drop, MC-CR still has superior heat dissipation performance.
Minimized Triple-Band Eight-Element Antenna Array for 5G Metal-frame Smartphone Applications
Authors: Huang Jianlin , Chen Zhuoni , Cai Qibo , Loh Tian Hong , Liu Gui
Published: January 2022

A multiple-input-multiple-output (MIMO) antenna array for triple-band 5G metal-frame smartphone applications is proposed in this paper. Each single antenna element consists of an S-shaped feeding strip and an L-shaped radiation strip on the metal frame. The dimension of the antenna element is only 6.5 mm × 7 mm (0.076 λ0 × 0.082 λ0, λ0 is the free-space wavelength at the frequency of 3.5 GHz). The −6 dB impedance bandwidth of the proposed eight-antenna array can cover 3.3–3.8 GHz, 4.8–5 GHz, and 5.15–5.925 GHz. The evolution design and the analysis of the optimal parameters for a single antenna element are derived to investigate the principle of the antenna. The measured total efficiency is larger than 70%. The measured isolation is better than 13 dB. The measurements of the prototype agree well with the simulation results.
Microfluidic Approaches and Methods Enabling Extracellular Vesicle Isolation for Cancer Diagnostics
Authors: Singh Premanshu , Patel Aarti , Kaffenes Anastasia , Hord Catherine , Kesterson Delaney , Prakash Shaurya
Published: January 2022

Advances in cancer research over the past half-century have clearly determined the molecular origins of the disease. Central to the use of molecular signatures for continued progress, including rapid, reliable, and early diagnosis is the use of biomarkers. Specifically, extracellular vesicles as biomarker cargo holders have generated significant interest. However, the isolation, purification, and subsequent analysis of these extracellular vesicles remain a challenge. Technological advances driven by microfluidics-enabled devices have made the challenges for isolation of extracellular vesicles an emerging area of research with significant possibilities for use in clinical settings enabling point-of-care diagnostics for cancer. In this article, we present a tutorial review of the existing microfluidic technologies for cancer diagnostics with a focus on extracellular vesicle isolation methods.
Adult Alphitobius diaperinus Microbial Community during Broiler Production and in Spent Litter after Stockpiling
Authors: Crippen Tawni L. , Singh Baneshwar , Anderson Robin C. , Sheffield Cynthia L.
Published: January 2022

The facilities used to raise broiler chickens are often infested with litter beetles (lesser mealworm, Alphitobius diaperinus). These beetles have been studied for their carriage of pathogenic microbes; however, a more comprehensive microbiome study on these arthropods is lacking. This study investigated their microbial community in a longitudinal study throughout 2.5 years of poultry production and after the spent litter, containing the mealworms, was piled in pastureland for use as fertilizer. The mean most abundant phyla harbored by the beetles in house were the Proteobacteria (39.8%), then Firmicutes (30.8%), Actinobacteria (21.1%), Tenericutes (5.1%), and Bacteroidetes (1.6%). The community showed a modest decrease in Firmicutes and increase in Proteobacteria over successive flock rotations. The beetles were relocated within the spent litter to pastureland, where they were found at least 19 weeks later. Over time in the pastureland, their microbial profile underwent a large decrease in the percent of Firmicutes (20.5%). The lesser mealworm showed an ability to survive long-term in the open environment within the spent litter, where their microbiome should be further assessed to both reduce the risk of transferring harmful bacteria, as well as to enhance their contribution when the litter is used as a fertilizer.
Moso Bamboo Invasion Reshapes Community Structure of Denitrifying Bacteria in Rhizosphere of Alsophila spinulosa
Authors: Zuo Youwei , Qu Huanhuan , Xia Changying , Zhang Huan , Zhang Jiahui , Deng Hongping
Published: January 2022

The uncontrolled invasion of moso bamboo (Phyllostachys pubescens) dramatically alters soil nitrogen cycling and destroys the natural habitat of Alsophila spinulosa. Nevertheless, no clear evidence points out the role of denitrifying bacteria in the invasion of bamboo into the habitat of A. spinulosa. In the present study, we found that low (importance value 0.0008), moderate (0.6551), and high (0.9326) bamboo invasions dramatically altered the underground root biomass of both P. pubescens and A. spinulosa. The root biomass of A. spinulosa was maximal at moderate invasion, indicating that intermediate disturbance might contribute to the growth and survival of the colonized plant. Successful bamboo invasion significantly increased rhizospheric soil available nitrogen content of A. spinulosa, coupled with elevated denitrifying bacterial abundance and diversity. Shewanella, Chitinophaga, and Achromobacter were the primary genera in the three invasions, whereas high bamboo invasion harbored more denitrifying bacteria and higher abundance than moderate and low invasions. Further correlation analysis found that most soil denitrifying bacteria were positively correlated with soil organic matter and available nitrogen but negatively correlated with pH and water content. In addition, our findings illustrated that two denitrifying bacteria, Chitinophaga and Sorangium, might be essential indicators for evaluating the effects of bamboo invasion on the growth of A. spinulosa. Collectively, this study found that moso bamboo invasion could change the nitrogen cycling of colonized habitats through alterations of denitrifying bacteria and provided valuable perspectives for profound recognizing the invasive impacts and mechanisms of bamboo expansion.
Morpho-Functional Traits Reveal Differences in Size Fractionated Phytoplankton Communities but Do Not Significantly Affect Zooplankton Grazing
Authors: Titocci Jessica , Bon Melanie , Fink Patrick
Published: January 2022

The recent emergence of approaches based on functional traits allows a more comprehensive evaluation of the role of functions and interactions within communities. As phytoplankton size and shape are the major determinants of its edibility to herbivores, alteration or loss of some morpho-functional phytoplankton traits should affect zooplankton grazing, fitness and population dynamics. Here, we investigated the response of altered phytoplankton morpho-functional trait distribution to grazing by zooplankton with contrasting food size preferences and feeding behaviors. To test this, we performed feeding trials in laboratory microcosms with size-fractionated freshwater phytoplankton (3 size classes, >30 µm; 5–30 µm and <5 µm) and two different consumer types: the cladoceran Daphnia longispina, (generalist unselective filter feeder) and the calanoid copepod Eudiaptomus sp. (selective feeder). We observed no significant changes in traits and composition between the controls and grazed phytoplankton communities. However, community composition and structure varied widely between the small and large size fractions, demonstrating the key role of size in structuring natural phytoplankton communities. Our findings also highlight the necessity to combine taxonomy and trait-based morpho-functional approaches when studying ecological dynamics in phytoplankton-zooplankton interactions.
Bridging the Gap: Type III Secretion Systems in Plant-Beneficial Bacteria
Authors: Zboralski Antoine , Biessy Adrien , Filion Martin
Published: January 2022

Type III secretion systems (T3SSs) are bacterial membrane-embedded nanomachines translocating effector proteins into the cytoplasm of eukaryotic cells. They have been intensively studied for their important roles in animal and plant bacterial diseases. Over the past two decades, genome sequencing has unveiled their ubiquitous distribution in many taxa of Gram-negative bacteria, including plant-beneficial ones. Here, we discuss the distribution and functions of the T3SS in two agronomically important bacterial groups: the symbiotic nodule-forming nitrogen-fixing rhizobia and the free-living plant-beneficial Pseudomonas spp. In legume-rhizobia symbiosis, T3SSs and their cognate effectors play important roles, including the modulation of the plant immune response and the initiation of the nodulation process in some cases. In plant-beneficial Pseudomonas spp., the roles of T3SSs are not fully understood, but pertain to plant immunity suppression, biocontrol against eukaryotic plant pathogens, mycorrhization facilitation, and possibly resistance against protist predation. The diversity of T3SSs in plant-beneficial bacteria points to their important roles in multifarious interkingdom interactions in the rhizosphere. We argue that the gap in research on T3SSs in plant-beneficial bacteria must be bridged to better understand bacteria/eukaryotes rhizosphere interactions and to support the development of efficient plant-growth promoting microbial inoculants.
Effects of Ionizing Radiation and Long-Term Storage on Hydrated vs. Dried Cell Samples of Extremophilic Microorganisms
Authors: Romano Ida , Camerlingo Carlo , Vaccari Lisa , Birarda Giovanni , Poli Annarita , Fujimori Akira , Lepore Maria , Moeller Ralf , Di Donato Paola
Published: January 2022

A main factor hampering life in space is represented by high atomic number nuclei and energy (HZE) ions that constitute about 1% of the galactic cosmic rays. In the frame of the “STARLIFE” project, we accessed the Heavy Ion Medical Accelerator (HIMAC) facility of the National Institute of Radiological Sciences (NIRS) in Chiba, Japan. By means of this facility, the extremophilic species Haloterrigena hispanica and Parageobacillus thermantarcticus were irradiated with high LET ions (i.e., Fe, Ar, and He ions) at doses corresponding to long permanence in the space environment. The survivability of HZE-treated cells depended upon either the storage time and the hydration state during irradiation; indeed, dry samples were shown to be more resistant than hydrated ones. With particular regard to spores of the species P. thermantarcticus, they were the most resistant to irradiation in a water medium: an analysis of the changes in their biochemical fingerprinting during irradiation showed that, below the survivability threshold, the spores undergo to a germination-like process, while for higher doses, inactivation takes place as a consequence of the concomitant release of the core’s content and a loss of integrity of the main cellular components. Overall, the results reported here suggest that the selected extremophilic microorganisms could serve as biological model for space simulation and/or real space condition exposure, since they showed good resistance to ionizing radiation exposure and were able to resume cellular growth after long-term storage.
Circulating Phylotypes of White Spot Syndrome Virus in Bangladesh and Their Virulence
Authors: Hasan Mehedi Mahmudul , Hoque M. Nazmul , Ahmed Firoz , Haque Md. Inja-Mamun , Sultana Munawar , Hossain M. Anwar
Published: January 2022

White Spot Syndrome Virus (WSSV) has emerged as one of the most prevalent and lethal viruses globally and infects both shrimps and crabs in the aquatic environment. This study aimed to investigate the occurrence of WSSV in different ghers of Bangladesh and the virulence of the circulating phylotypes. We collected 360 shrimp (Penaeus monodon) and 120 crab (Scylla sp.) samples from the south-east (Cox’s Bazar) and south-west (Satkhira) coastal regions of Bangladesh. The VP28 gene-specific PCR assays and sequencing revealed statistically significant (p < 0.05, Kruskal–Wallis test) differences in the prevalence of WSSV in shrimps and crabs between the study areas (Cox’s Bazar and Satkhira) and over the study periods (2017–2019). The mean Log load of WSSV varied from 8.40 (Cox’s Bazar) to 10.48 (Satkhira) per gram of tissue. The mean values for salinity, dissolved oxygen, temperature and pH were 14.71 ± 0.76 ppt, 3.7 ± 0.1 ppm, 34.11 ± 0.38 °C and 8.23 ± 0.38, respectively, in the WSSV-positive ghers. The VP28 gene-based phylogenetic analysis showed an amino-acid substitution (E→G) at the 167th position in the isolates from Cox’s Bazar (referred to as phylotype BD2) compared to the globally circulating one (BD1). Shrimp PL artificially challenged with BD1 and BD2 phylotypes with filtrates of tissue containing 0.423 × 109 copies of WSSV per mL resulted in a median LT50 value of 73 h and 75 h, respectively. The in vivo trial showed higher mean Log WSSV copies (6.47 ± 2.07 per mg tissue) in BD1-challenged shrimp PL compared to BD2 (4.75 ± 0.35 per mg tissue). Crabs infected with BD1 and BD2 showed 100% mortality within 48 h and 62 h of challenge, respectively, with mean Log WSSV copies of 12.06 ± 0.48 and 9.95 ± 0.37 per gram tissue, respectively. Moreover, shrimp antimicrobial peptides (AMPs), penaeidin and lysozyme expression were lower in the BD1-challenged group compared to BD2 challenged shrimps. These results collectively demonstrated that relative virulence properties of WSSV based on mortality rate, viral load and expression of host immune genes in artificially infected shrimp PL could be affected by single aa substitution in VP28.
Biochemical Properties of Two Plasmodium malariae Cysteine Proteases, Malapain-2 and Malapain-4
Authors: Lê Hương Giang , Kang Jung-Mi , Võ Tuấn Cường , Yoo Won Gi , Lee Kon Ho , Na Byoung-Kuk
Published: January 2022

Cysteine proteases belonging to the falcipain (FP) family play a pivotal role in the biology of malaria parasites and have been extensively investigated as potential antimalarial drug targets. Three paralogous FP-family cysteine proteases of Plasmodium malariae, termed malapains 2–4 (MP2–4), were identified in PlasmoDB. The three MPs share similar structural properties with the FP-2/FP-3 subfamily enzymes and exhibit a close phylogenetic lineage with vivapains (VXs) and knowpains (KPs), FP orthologues of P. vivax and P. knowlesi. Recombinant MP-2 and MP-4 were produced in a bacterial expression system, and their biochemical properties were characterized. Both recombinant MP-2 and MP-4 showed enzyme activity across a broad range of pH values with an optimum activity at pH 5.0 and relative stability at neutral pHs. Similar to the FP-2/FP-3 subfamily enzymes in other Plasmodium species, recombinant MP-2 and MP-4 effectively hydrolyzed hemoglobin at acidic pHs. They also degraded erythrocyte cytoskeletal proteins, such as spectrin and band 3, at a neutral pH. These results imply that MP-2 and MP-4 are redundant hemoglobinases of P. malariae and may also participate in merozoite egression by degrading erythrocyte cytoskeletal proteins. However, compared with other FP-2/FP-3 enzymes, MP-2 showed a strong preference for arginine at the P2 position. Meanwhile, MP-4 showed a primary preference for leucine at the P2 position but a partial preference for phenylalanine. These different substrate preferences of MPs underscore careful consideration in the design of optimized inhibitors targeting the FP-family cysteine proteases of human malaria parasites.
Mineralization and Structural Controls of the AB-Bid Carbonate-Hosted Pb-Zn (±Cu) Deposit, Tabas-Posht e Badam Metallogenic Belt, Iran
Authors: Rajabi Abdorrahman , Canet Carles , Alfonso Pura , Mahmoodi Pouria , Yarmohammadi Ali , Sharifi Shahba , Mahdavi Amir , Rezaei Somaye
Published: January 2022

The Ab-Bid deposit, located in the Tabas-Posht e Badam metallogenic belt (TPMB) in Central Iran, is the largest Pb-Zn (±Cu) deposit in the Behadad-Kuhbanan mining district. Sulfide mineralization in the Ab-Bid deposit formed in Middle Triassic carbonate rocks and contains galena and sphalerite with minor pyrite, chalcopyrite, chalcocite, and barite. Silicification and dolomitization are the main wall-rock alteration styles. Structural and textural observations indicate that the mineralization occurs as fault fills with coarse-textured, brecciated, and replacement sulfides deposited in a bookshelf structure. The Ab-Bid ore minerals precipitated from high temperature (≈180–200 °C) basinal brines within the dolomitized and silicified carbonates. The sulfur isotope values of ore sulfides suggest a predominant thermochemical sulfate reduction (TSR) process, and the sulfur source was probably Triassic-Jurassic seawater sulfate. Given the current evidence, mineralization at Ab-Bid resulted from focusing of heated, over-pressurized brines of modified basinal origin into an active fault system. The association of the sulfide mineralization with intensely altered wall rock represents a typical example of such features in the Mississippi Valley-type (MVT) metallogenic domain of the TPMB. According to the structural data, the critical ore control is a bookshelf structure having mineralized dextral strike-slip faults in the northern part of the Ab-Bid reverse fault, which seems to be part of a sinistral brittle shear zone. Structural relationships also indicate that the strata-bound, fault-controlled Ab-Bid deposit was formed after the Middle Jurassic, and its formation may be related to compressive and deformation stages of the Mid-Cimmerian in the Middle Jurassic to Laramide orogenic cycle in the Late Cretaceous-Tertiary.
Kinetic Modeling and Mechanisms of Manganese Removal from Alkaline Mine Water Using a Pilot Scale Column Reactor
Authors: Fuchida Shigeshi , Tajima Shota , Nishimura Takuro , Tokoro Chiharu
Published: January 2022

Manganese (Mn) is a major element in various aqueous and soil environments that is sometimes highly concentrated in mine water and other mineral processing wastewater. In this study, we investigated Mn removal from alkaline mine water (pH > 9) with an Mn-coated silica sand packed into a pilot-scale column reactor and examined the specific reaction mechanism using X-ray absorption near-edge structure (XANES) analysis and geochemical kinetic modeling. The kinetic effect of dissolved Mn(II) removal by birnessite (δ-Mn(IV)O2) at pH 6 and 8 was evaluated at different Mn(II)/Mn(IV) molar ratios of 0.1–10. Our results confirmed the positive effect of the presence of δ-MnO2 on the short-term removal (60 min) of dissolved Mn. XANES analysis results revealed that δ-MnO2 was more abundant than Mn(III)OOH in the reactor, which may have accumulated during a long-term reaction (4 months) after the reactor was turned on. A gradual decrease in dissolved Mn(II) concentration with depth was observed in the reactor, and comparison with the kinetic modeling result confirmed that δ-MnO2 interaction was the dominant Mn removal mechanism. Our results show that δ-MnO2 contents could play a significant role in controlling Mn removability from mine water in the reactor.
Bioleaching Process for Copper Extraction from Waste in Alkaline and Acid Medium
Authors: Ristović Ivica , Štyriaková Darina , Štyriaková Iveta , Šuba Jaroslav , Širadović Emilija
Published: January 2022

Flotation wastes are becoming a valuable secondary raw material and source of many metals and semimetals worldwide with the possibilities of industrial recycling. The flotation tailings contain oxide and sulfide minerals that have not been sufficiently stabilized and form acidic mine waters, which in turn contaminate groundwater, rivers, and reservoi6sediments. An effective way to recycle these mine wastes is to recover the metals through leaching. While the focus is on acid bioleaching by iron- and sulfur-oxidizing bacteria, alkaline leaching, and the removal of iron-containing surface coatings on sulfide minerals contribute significantly to the overall environmental efficiency of leaching. For this study, static and percolate bioleaching of copper from flotation waste at the Bor copper mine in Serbia was investigated in alkaline and then acidic environments. The aim of the study was to verify the effect of alkaline pH and nutrient stimulation on the bioleaching process and element extraction. A sample was taken from a mine waste site, which was characterized by XRF analyses. The concentration of leached copper was increased when copper oxide minerals dissolved during alkaline bioleaching. The highest copper yield during alkaline bioleaching was achieved after 9 days and reached 67%. The addition of nutrients in acidic medium enhanced the degradation of sulfide minerals and increased Cu recovery to 74%, while Fe and Ag recoveries were not significantly affected. Combined bioleaching with alkaline media and iron- and sulfur-oxidizing bacteria in acidic media should be a good reference for ecological Cu recovery from copper oxide and sulfide wastes.
Deep Gold Exploration with SQUID TEM in the Qingchengzi Orefield, Eastern Liaoning, Northeast China
Authors: Wu Junjie , Zhi Qingquan , Deng Xiaohong , Wang Xingchun , Chen Xiaodong , Zhao Yi , Huang Yue
Published: January 2022

The Qingchengzi orefield is an important polymetallic ore concentration zone in the northern margin of the North China Craton (NCC). The region has significant metallogenic potential for deep mining. Many areas with gold mineralization have been found in the shallow area of Taoyuan–Xiaotongjiapuzi–Linjiasandaogou in the east of the Qingchengzi orefield. To assess the distribution of mineralization levels, we carried out deep exploration using the transient electromagnetic method (TEM). A superconductive quantum interference device (SQUID) magnetometer and a conventional induction coil were used for field data acquisition. The SQUID data inversion results reflect the bottom interface of the high-conductivity area, the fold state of the underlying dolomite marble stratum, and the deep structural characteristics of the syncline. Secondary crumples appear in the inversion results of the southern segment of TEM, which is inferred as a favorable area for deep gold mineralization. Negative values appear in the SQUID data of some stations, to varying degrees. This induced polarization phenomenon may be related to deep gold mineralization.
Geochemical and Hydrothermal Alteration Patterns of the Abrisham-Rud Porphyry Copper District, Semnan Province, Iran
Authors: Timkin Timofey , Abedini Mahnaz , Ziaii Mansour , Ghasemi Mohammad Reza
Published: January 2022

In this study, the zonality method has been used to separate geochemical anomalies and to calculate erosional levels in the regional scale for porphyry-Cu deposit, Abrisham-Rud (Semnan province, East of Iran). In geochemical maps of multiplicative haloes, the co-existence of both the supra-ore elements and sub-ore elements local maxima implied blind mineralization in the northwest of the study area. Moreover, considering the calculated zonality indices and two previously presented geochemical models, E and NW of the study have been introduced as ZDM and BM, respectively. For comparison, the geological layer has been created by combining rock units, faults, and alterations utilizing the K-nearest neighbor (KNN) algorithm. The rock units and faults have been identified from the geological map; moreover, alterations have been detected by using remote sensing and ASTER images. In the geological layer map related to E of the study area, many parts have been detected as high potential areas; in addition, both geochemical and geological layer maps only confirmed each other at the south of this area and suggested this part as high potential mineralization. Therefore, high potential areas in the geological layer map could be related to the mineralization or not. Due to the incapability of the geological layer in identifying erosional levels, mineralogy investigation could be used to recognize this level; however, because of the high cost, mineralogy is not recommended for application on a regional scale. The findings demonstrated that the zonality method has successfully distinguished geochemical anomalies including BM and ZDM without dependent on alteration and was able to predict erosional levels. Therefore, this method is more powerful than the geological layer.
Correction of Temperature Variation with Independent Water Samples to Predict Soluble Solids Content of Kiwifruit Juice Using NIR Spectroscopy
Authors: Kaur Harpreet , Künnemeyer Rainer , McGlone Andrew
Published: January 2022

Using the framework of aquaphotomics, we have sought to understand the changes within the water structure of kiwifruit juice occurring with changes in temperature. The study focuses on the first (1300–1600 nm) and second (870–1100 nm) overtone regions of the OH stretch of water and examines temperature differences between 20, 25, and 30 °C. Spectral data were collected using a Fourier transform–near-infrared spectrometer with 1 mm and 10 mm transmission cells for measurements in the first and second overtone region, respectively. Water wavelengths affected by temperature variation were identified. Aquagrams (water spectral patterns) highlight slightly different responses in the first and second overtone regions. The influence of increasing temperature on the peak absorbance of the juice was largely a lateral wavelength shift in the first overtone region and a vertical amplitude shift in the second overtone region of water. With the same data set, we investigated the use of external parameter orthogonalisation (EPO) and extended multiple scatter correction (EMSC) pre-processing to assist in building temperature-independent partial least square regression models for predicting soluble solids concentration (SSC) of kiwifruit juice. The interference component selected for correction was the first principal component loading measured using pure water samples taken at the same three temperatures (20, 25, and 30 °C). The results show that the EMSC method reduced SSC prediction bias from 0.77 to 0.1 °Brix in the first overtone region of water. Using the EPO method significantly reduced the prediction bias from 0.51 to 0.04 °Brix, when applying a model made at one temperature (30 °C) to measurements made at another temperature (20 °C) in the second overtone region of water.