bluuebunny/crossref_metadata_2025 huggingface dataset:
Quantifying methane emissions from rice fields in the Taihu Lake region, China by coupling a detailed soil database with biogeochemical model
Authors: Zhang L. , Yu D. , Shi X. , Weindorf D. , Zhao L. , Ding W. , Wang H. , Pan J. , Li C.
Published: April 2010

Abstract. As China has approximately 22% of the world's rice paddies, the regional quantification of CH4 emissions from these paddies is important in determining their contribution to the global greenhouse gas effect. This paper reports the use of a biogeochemical model (DeNitrification and DeComposition or DNDC) for quantifying CH4 emissions from rice fields in the Taihu Lake region of China. For this application, the DNDC model was linked to a 1:50 000 soil database derived from 1107 paddy soil profiles compiled during the Second National Soil Survey of China in the 1980s–1990s. The simulated results showed that the 2.3 Mha of paddy rice fields in the Taihu Lake region emitted the equivalent of 5.7 Tg C from 1982–2000, with the average CH4 flux ranging from 114 to 138 kg C ha−1 y−1. As for soil subgroups, the highest emission rate (660 kg C ha−1 y−1) was linked to gleyed paddy soils accounting for about 4.4% of the total area of paddy soils. The lowest emission rate (91 kg C ha−1 y−1) was associated with degleyed paddy soils accounting for about 18% of the total area of paddy soils. The most common soil in the area was hydromorphic paddy soils, which accounted for about 53% of the total area of paddy soils with a CH4 flux of 106 kg C ha−1 y−1. On a regional basis, the annual averaged CH4 flux in the Taihu Lake plain soil region and alluvial plain soil region were higher than that in the low mountainous and hilly soil region and the polder soil region. The model simulation was conducted with two databases using polygons or counties as the basic units. The county-based database contained soil information coarser than the polygon system built based on the 1:50 000 soil database. The modeled results with the two databases found similar spatial patterns of CH4 emissions in the Taihu Lake region. However, discrepancies exist between the results from the two methods. The total CH4 emissions generated from the polygon-based database is 2.6 times the minimum CH4 emissions generated from the county-based database, and is 0.98 times the maximum CH4 emissions generated from the county-based database. The average value of the relative deviation ranged from −20% to 98% for most counties, which indicates that a more precise soil database is necessary to better simulate CH4 emissions from rice fields in the Taihu Lake region using the DNDC model.
Satellite-detected fluorescence reveals global physiology of ocean phytoplankton
Authors: Behrenfeld M. J. , Westberry T. K. , Boss E. S. , O'Malley R. T. , Siegel D. A. , Wiggert J. D. , Franz B. A. , McClain C. R. , Feldman G. C. , Doney S. C. , Moore J. K. , Dall'Olmo G. , Milligan A. J. , Lima I. , Mahowald N.
Published: April 2010

Abstract. Phytoplankton photosynthesis links global ocean biology and climate-driven fluctuations in the physical environment. These interactions are largely expressed through changes in phytoplankton physiology, but physiological status has proven extremely challenging to characterize globally. Phytoplankton fluorescence does provide a rich source of physiological information long exploited in laboratory and field studies, and is now observed from space. Here we evaluate the physiological underpinnings of global variations in satellite-based phytoplankton chlorophyll fluorescence. The three dominant factors influencing fluorescence distributions are chlorophyll concentration, pigment packaging effects on light absorption, and light-dependent energy-quenching processes. After accounting for these three factors, resultant global distributions of quenching-corrected fluorescence quantum yields reveal a striking consistency with anticipated patterns of iron availability. High fluorescence quantum yields are typically found in low iron waters, while low quantum yields dominate regions where other environmental factors are most limiting to phytoplankton growth. Specific properties of photosynthetic membranes are discussed that provide a mechanistic view linking iron stress to satellite-detected fluorescence. Our results present satellite-based fluorescence as a valuable tool for evaluating nutrient stress predictions in ocean ecosystem models and give the first synoptic observational evidence that iron plays an important role in seasonal phytoplankton dynamics of the Indian Ocean. Satellite fluorescence may also provide a path for monitoring climate-phytoplankton physiology interactions and improving descriptions of phytoplankton light use efficiencies in ocean productivity models.
Comparing high resolution WRF-VPRM simulations and two global CO2 transport models with coastal tower measurements of CO2
Authors: Ahmadov R. , Gerbig C. , Kretschmer R. , Körner S. , Rödenbeck C. , Bousquet P. , Ramonet M.
Published: April 2010

Abstract. In order to better understand the effects that mesoscale transport has on atmospheric CO2 distributions, we have used the atmospheric WRF model coupled to the diagnostic biospheric model VPRM, which provides high resolution biospheric CO2 fluxes based on MODIS satellite indices. We have run WRF-VPRM for the period from 16 May to 15 June in 2005 covering the intensive period of the CERES experiment, using the CO2 fields from the global model LMDZ for initialization and lateral boundary conditions. The comparison of modeled CO2 concentration time series against observations at the Biscarosse tower and against output from two global models – LMDZ and TM3 – clearly reveals that WRF-VPRM can capture the measured CO2 signal much better than the global models with lower resolution. Also the diurnal variability of the atmospheric CO2 field caused by recirculation of nighttime respired CO2 is simulated by WRF-VRPM reasonably well. Analysis of the nighttime data indicates that with high resolution modeling tools such as WRF-VPRM a large fraction of the time periods that are impossible to utilize in global models, can be used quantitatively and may help to constrain respiratory fluxes. The paper concludes that we need to utilize a high-resolution model such as WRF-VPRM to use continental observations of CO2 concentration data with more spatial and temporal coverage and to link them to the global inversion models.
Stoichiometries of remineralisation and denitrification in global biogeochemical ocean models
Authors: Paulmier A. , Kriest I. , Oschlies A.
Published: April 2010

Abstract. Since the seminal paper of Redfield (1934), constant stoichiometric elemental ratios linking biotic carbon and nutrient fluxes are often assumed in marine biogeochemistry, and especially in coupled biogeochemical circulation models, to couple the global oxygen, carbon and nutrient cycles. However, when looking in more detail, some deviations from the classical Redfield stoichiometry have been reported, in particular with respect to remineralization of organic matter changing with depth or with ambient oxygen levels. We here compare the assumptions about the stoichiometry of organic matter and its remineralization that are used explicitly and implicitly in common biogeochemical ocean models. We find that the implicit assumptions made about the hydrogen content of organic matter can lead to inconsistencies in the modeled remineralization and denitrification stoichiometries. It is suggested that future marine biogeochemical models explicitly state the chemical composition assumed for the organic matter, including its oxygen and hydrogen content.
Potential impacts from biological aerosols on ensembles of continental clouds simulated numerically
Authors: Phillips V. T. J. , Andronache C. , Christner B. , Morris C. E. , Sands D. C. , Bansemer A. , Lauer A. , McNaughton C. , Seman C.
Published: April 2010

Abstract. An aerosol-cloud modeling framework is described to simulate the activation of ice particles and droplets by biological aerosol particles, such as airborne ice-nucleation active (INA) bacteria. It includes the empirical parameterisation of heterogeneous ice nucleation and a semi-prognostic aerosol component, which have been incorporated into a cloud-system resolving model (CSRM) with double-moment bulk microphysics. The formation of cloud liquid by soluble material coated on these partially insoluble organic aerosols is represented. It determines their partial removal from deep convective clouds by accretion onto precipitation in the cloud model. This "aerosol-cloud model" is validated for diverse cases of deep convection with contrasting aerosol conditions, against satellite, ground-based and aircraft observations. Simulations are performed with the aerosol-cloud model for a month-long period of summertime convective activity over Oklahoma. It includes three cases of continental deep convection simulated previously by Phillips and Donner (2006). Elevated concentrations of insoluble organic aerosol, boosted by a factor of 100 beyond their usual values for this continental region, are found to influence significantly the following quantities: (1) the average numbers and sizes of ice crystals and droplets in the clouds; (2) the horizontal cloud coverage in the free troposphere; (3) precipitation at the ground; and (4) incident solar insolation at the surface. This factor of 100 is plausible for natural fluctuations of the concentration of insoluble organic aerosol, in view of variability of cell concentrations for airborne bacteria seen by Lindemann et al. (1982). In nature, such boosting of the insoluble organic aerosol loading could arise from enhanced emissions of biological aerosol particles from a land surface. Surface wetness and solar insolation at the ground are meteorological quantities known to influence rates of growth of certain biological particles (e.g. bacteria). Their rates of emission into the atmosphere must depend on these same quantities, in addition to surface wind speed, turbulence and convection. Finally, the present study is the first attempt at evaluating the impacts from biological aerosols on mesoscale cloud ensembles in the literature.
Changes in the spectrum and rates of extracellular enzyme activities in seawater following aggregate formation
Authors: Ziervogel K. , Steen A. D. , Arnosti C.
Published: April 2010

Abstract. Marine snow aggregates are heavily colonized by heterotrophic microorganisms that express high levels of hydrolytic activities, making aggregates hotspots for carbon remineralization in the ocean. To assess how aggregate formation influences the ability of seawater microbial communities to access organic carbon, we compared hydrolysis rates of six polysaccharides in coastal seawater after aggregates had been formed (via incubation on a roller table) with hydrolysis rates in seawater from the same site that had not incubated on a roller table (referred to as whole seawater). Hydrolysis rates in the aggregates themselves were up to three orders of magnitude higher on a volume basis than in whole seawater. The enhancement of enzyme activity in aggregates relative to whole seawater differed by substrate, suggesting that the enhancement was under cellular control, rather than due to factors such as lysis or grazing. A comparison of hydrolysis rates in whole seawater with those in aggregate-free seawater, i.e. the fraction of water from the roller bottles that did not contain aggregates, demonstrated a nuanced microbial response to aggregate formation. Activities of laminarinase and xylanase enzymes in aggregate-free seawater were higher than in whole seawater, while activities of chondroitin, fucoidan, and arabinogalactan hydrolyzing enzymes were lower than in whole seawater. These data suggest that aggregate formation enhanced production of laminarinase and xylanase enzymes, and the enhancement also affected the surrounding seawater. Decreased activities of chondroitin, fucoidan, and arabinoglactan-hydrolyzing enzymes in aggregate-free seawaters relative to whole seawater are likely due to shifts in enzyme production by the aggregate-associated community, coupled with the effects of enzyme degradation. Enhanced activities of laminarin- and xylan-hydrolyzing enzymes in aggregate-free seawater were due at least in part to cell-free enzymes. Measurements of enzyme lifetime using commercial enzymes suggest that hydrolytic cell-free enzymes may be active over timescales of days to weeks. Considering water residence times of up to 10 days in the investigation area (Apalachicola Bay), enzymes released from aggregates may be active over timescales long enough to affect carbon cycling in the Bay as well as in the adjacent Gulf of Mexico. Aggregate formation may thus be an important mechanism shaping the spectrum of enzymes active in the ocean, stimulating production of cell-free enzymes and leading to spatial and temporal decoupling of enzyme activity from the microorganisms that produced them.
Regional impacts of iron-light colimitation in a global biogeochemical model
Authors: Galbraith E. D. , Gnanadesikan A. , Dunne J. P. , Hiscock M. R.
Published: April 2010

Abstract. Laboratory and field studies have revealed that iron has multiple roles in phytoplankton physiology, with particular importance for light-harvesting cellular machinery. However, although iron-limitation is explicitly included in numerous biogeochemical/ecosystem models, its implementation varies, and its effect on the efficiency of light harvesting is often ignored. Given the complexity of the ocean environment, it is difficult to predict the consequences of applying different iron limitation schemes. Here we explore the interaction of iron and nutrient cycles in an ocean general circulation model using a new, streamlined model of ocean biogeochemistry. Building on previously published parameterizations of photoadaptation and export production, the Biogeochemistry with Light Iron Nutrients and Gasses (BLING) model is constructed with only four explicit tracers but including macronutrient and micronutrient limitation, light limitation, and an implicit treatment of community structure. The structural simplicity of this computationally-inexpensive model allows us to clearly isolate the global effect that iron availability has on maximum light-saturated photosynthesis rates vs. the effect iron has on photosynthetic efficiency. We find that the effect on light-saturated photosynthesis rates is dominant, negating the importance of photosynthetic efficiency in most regions, especially the cold waters of the Southern Ocean. The primary exceptions to this occur in iron-rich regions of the Northern Hemisphere, where high light-saturated photosynthesis rates allow photosynthetic efficiency to play a more important role. In other words, the ability to efficiently harvest photons has little effect in regions where light-saturated growth rates are low. Additionally, we speculate that the phytoplankton cells dominating iron-limited regions tend to have relatively high photosynthetic efficiency, due to reduced packaging effects. If this speculation is correct, it would imply that natural communities of iron-stressed phytoplankton may tend to harvest photons more efficiently than would be inferred from iron-limitation experiments with other phytoplankton. We suggest that iron limitation of photosynthetic efficiency has a relatively small impact on global biogeochemistry, though it is expected to impact the seasonal cycle of plankton as well as the vertical structure of primary production.
Natural iron enrichment around the Antarctic Peninsula in the Southern Ocean
Authors: Ardelan M. V. , Holm-Hansen O. , Hewes C. D. , Reiss C. S. , Silva N. S. , Dulaiova H. , Steinnes E. , Sakshaug E.
Published: April 2010

Abstract. As part of the US-AMLR program in January-February of 2006, 99 stations in the South Shetland Islands-Antarctic Peninsula region were sampled to understand the variability in hydrographic and biological properties related to the abundance and distribution of krill in this area. Concentrations of dissolved iron (DFe) and total acid-leachable iron (TaLFe) were measured in the upper 150 m at 16 of these stations (both coastal and pelagic waters) to better resolve the factors limiting primary production in this area and in downstream waters of the Scotia Sea. The concentrations of DFe and TaLFe in the upper mixed layer (UML) were relatively high in Weddell Sea Shelf Waters (~0.6 nM and 15 nM, respectively) and low in Drake Passage waters (~0.2 nM and 0.9 nM, respectively). In the Bransfield Strait, representing a mixture of waters from the Weddell Sea and the Antarctic Circumpolar Current (ACC), concentrations of DFe were ~0.4 nM and of TaLFe ~1.7 nM. The highest concentrations of DFe and TaLFe in the UML were found at shallow coastal stations close to Livingston Island (~1.6 nM and 100 nM, respectively). The ratio of TaLFe:DFe varied with the distance to land: ~45 at the shallow coastal stations, ~15 in the high-salinity waters of Bransfield Strait, and ~4 in ACC waters. Concentrations of DFe increased slightly with depth in the water column, while that of TaLFe did not show any consistent trend with depth. Our Fe data are discussed in regard to the hydrography and water circulation patterns in the study area, and with the hypothesis that the relatively high rates of primary production in the central regions of the Scotia Sea are partially sustained by natural iron enrichment resulting from a northeasterly flow of iron-rich coastal waters originating in the South Shetland Islands-Antarctic Peninsula region.
Oxygen, carbon, and nutrients in the oligotrophic eastern subtropical North Atlantic
Authors: Kähler P. , Oschlies A. , Dietze H. , Koeve W.
Published: April 2010

Abstract. The Beta Triangle, a region of the oligotrophic subtropical eastern North Atlantic Ocean, is notorious for its enigmatic oxygen, carbon, and nitrogen balances, in which nutrient supply is said to explain only a fraction of production necessary for estimated carbon export. Rates of dissolved organic carbon accumulation and dissolved organic nitrogen utilization in surface water and an assessment of oxygen utilized, organic matter consumed, and nitrate and phosphate regenerated in subsurface water, show that conventional production estimates miss substantial shares of biotic production. The shallow export of total organic carbon, predominantly dissolved (DOC), by subduction is responsible for about 50–70% of apparent oxygen utilization in subsurface water between the base of the surface layer at ca. 140 m and ca. 195 m depth, but it is insignificant below. Additionally, there is an estimated accumulation of 1.0 to 1.75 mol DOC m−2 a−1 in surface water. Including DOC dynamics in its carbon balance reveals the surface of this ultra-oligotrophic part of the ocean to be net autotrophic. Increasing subsurface values of excess nitrogen (DINxs) imply the export of nitrogen from surface water stemming from production not exclusively fuelled by new nitrate supplied from below. Total organic nitrogen (almost exclusively dissolved, DON) is consumed in the surface layer at a rate estimated at 0.13 to 0.23 mol m−2 a−1. There is no variation in dissolved organic phosphorus (DOP) in the same direction. DON utilization thus contributes to the pronounced subsurface DINxs signature. DOC export and accumulation are important in the carbon balance in surface and near-surface water. DON utilization and, probably, N2 fixation contribute significant amounts to the nitrogen supply of surface water. These processes can close part of the enigmatic carbon and nitrogen balances in the Beta Triangle. There are, however, no comparable processes which can explain the equally enigmatic situation concerning phosphorus supply in this area.
Seasonal variations in carbon dioxide exchange in an alpine wetland meadow on the Qinghai-Tibetan Plateau
Authors: Zhao L. , Li J. , Xu S. , Zhou H. , Li Y. , Gu S. , Zhao X.
Published: April 2010

Abstract. Alpine wetland meadow could functions as a carbon sink due to it high soil organic content and low decomposition. However, the magnitude and dynamics of carbon stock in alpine wetland ecosystems are not well quantified. Therefore, understanding how environmental variables affect the processes that regulate carbon fluxes in alpine wetland meadow on the Qinghai-Tibetan Plateau is critical. To address this issue, Gross Primary Production (GPP), Ecosystem Respiration (Reco), and Net Ecosystem Exchange (NEE) were examined in an alpine wetland meadow using the eddy covariance method from October 2003 to December 2006 at the Haibei Research Station of the Chinese Academy of Sciences. Seasonal patterns of GPP and Reco were closely associated with leaf area index (LAI). The Reco showed a positive exponential to soil temperature and relatively low Reco occurred during the non-growing season after a rain event. This result is inconsistent with the result observed in alpine shrubland meadow. In total, annual GPP were estimated at 575.7, 682.9, and 630.97 g C m−2 in 2004, 2005, and 2006, respectively. Meanwhile, the Reco were equal to 676.8, 726.4, 808.2 g C m−2, and thus the NEE were 101.1, 44.0 and 173.2 g C m−2. These results indicated that the alpine wetland meadow was a moderately source of carbon dioxide (CO2). The observed carbon dioxide fluxes in the alpine wetland meadow were higher than other alpine meadow such as Kobresia humilis meadow and shrubland meadow.
Spatial and temporal effects of drought on soil CO2 efflux in a cacao agroforestry system in Sulawesi, Indonesia
Authors: van Straaten O. , Veldkamp E. , Köhler M. , Anas I.
Published: April 2010

Abstract. Climate change induced droughts pose a serious threat to ecosystems across the tropics and sub-tropics, particularly to those areas not adapted to natural dry periods. In order to study the vulnerability of cacao (Theobroma cacao) – Gliricidia sepium agroforestry plantations to droughts a large scale throughfall displacement roof was built in Central Sulawesi, Indonesia. In this 19-month experiment, we compared soil surface CO2 efflux (soil respiration) from three roof plots with three adjacent control plots. Soil respiration rates peaked at intermediate soil moisture conditions and decreased under increasingly dry conditions (drought induced), or increasingly wet conditions (as evidenced in control plots). The roof plots exhibited a slight decrease in soil respiration compared to the control plots (average 13% decrease). The strength of the drought effect was spatially variable – while some measurement chamber sites reacted strongly (responsive) to the decrease in soil water content (up to R2=0.70) (n=11), others did not react at all (non-responsive) (n=7). A significant correlation was measured between responsive soil respiration chamber sites and sap flux density ratios of cacao (R=0.61) and Gliricidia (R=0.65). Leaf litter CO2 respiration decreased as conditions became drier. The litter layer contributed approximately 3–4% of the total CO2 efflux during dry periods and up to 40% during wet periods. Within days of roof opening soil CO2 efflux rose to control plot levels. Thereafter, CO2 efflux remained comparable between roof and control plots. The cumulative effect on soil CO2 emissions over the duration of the experiment was not significantly different: the control plots respired 11.1±0.5 Mg C ha−1 yr−1, while roof plots respired 10.5±0.5 Mg C ha−1 yr−1. The relatively mild decrease measured in soil CO2 efflux indicates that this agroforestry ecosystem is capable of mitigating droughts with only minor stress symptoms.
Biogeophysical feedbacks trigger shifts in the modelled vegetation-atmosphere system at multiple scales
Authors: Dekker S. C. , de Boer H. J. , Brovkin V. , Fraedrich K. , Wassen M. J. , Rietkerk M.
Published: April 2010

Abstract. Terrestrial vegetation influences climate by modifying the radiative-, momentum-, and hydrologic-balance. This paper contributes to the ongoing debate on the question whether positive biogeophysical feedbacks between vegetation and climate may lead to multiple equilibria in vegetation and climate and consequent abrupt regime shifts. Several modelling studies argue that vegetation-climate feedbacks at local to regional scales could be strong enough to establish multiple states in the climate system. An Earth Model of Intermediate Complexity, PlaSim, is used to investigate the resilience of the climate system to vegetation disturbance at regional to global scales. We hypothesize that by starting with two extreme initialisations of biomass, positive vegetation-climate feedbacks will keep the vegetation-atmosphere system within different attraction domains. Indeed, model integrations starting from different initial biomass distributions diverged to clearly distinct climate-vegetation states in terms of abiotic (precipitation and temperature) and biotic (biomass) variables. Moreover, we found that between these states there are several other steady states which depend on the scale of perturbation. From here global susceptibility maps were made showing regions of low and high resilience. The model results suggest that mainly the boreal and monsoon regions have low resiliences, i.e. instable biomass equilibria, with positive vegetation-climate feedbacks in which the biomass induced by a perturbation is further enforced. The perturbation did not only influence single vegetation-climate cell interactions but also caused changes in spatial patterns of atmospheric circulation due to neighbouring cells constituting in spatial vegetation-climate feedbacks. Large perturbations could trigger an abrupt shift of the system towards another steady state. Although the model setup used in our simulation is rather simple, our results stress that the coupling of feedbacks at multiple scales in vegetation-climate models is essential and urgent to understand the system dynamics for improved projections of ecosystem responses to anthropogenic changes in climate forcing.
Dissolved methane during hypoxic events at the Boknis Eck time series station (Eckernförde Bay, SW Baltic Sea)
Authors: Bange H. W. , Bergmann K. , Hansen H. P. , Kock A. , Koppe R. , Malien F. , Ostrau C.
Published: April 2010

Abstract. Dissolved CH4 was measured in the water column at the Boknis Eck (BE) time series station in the Eckernförde Bay (SW Baltic Sea) on a monthly basis from June 2006 to November 2008. The water column at BE was always supersaturated with CH4 and, therefore, CH4 was released to the atmosphere throughout the sampling period: the mean CH4 surface (1 m) saturation at BE was 554±317%. A pulse of enhanced CH4 emissions occurs when the CH4 accumulation in the hypoxic bottom layer during summer is terminated in late summer/autumn. We did not detect a straightforward relationship between periods of enhanced CH4 in the bottom layer and hypoxic events at BE: the sedimentary release of CH4 seemed to be mainly triggered by sedimenting organic material from phytoplankton blooms. We conclude that future CH4 emissions from BE will be determined by the intensity of phytoplankton blooms, which in turn will be influenced by eutrophication. However, hypoxic events seem to have only a modulating effect on the enhancement of sedimentary methanogenesis and the subsequent release of CH4 to the water column.
A culture-based calibration of benthic foraminiferal paleotemperature proxies: δ18O and Mg/Ca results
Authors: Filipsson H. L. , Bernhard J. M. , Lincoln S. A. , McCorkle D. C.
Published: April 2010

Abstract. Benthic foraminifera were cultured for five months at four temperatures (4, 7, 14 and 21 °C) to establish the temperature dependence of foraminiferal calcite δ18O and Mg/Ca. Two Bulimina species (B. aculeata and B. marginata) were most successful in terms of calcification, adding chambers at all four temperatures and reproducing at 7 and 14 °C. Foraminiferal δ18O values displayed ontogenetic variations, with lower values in younger individuals. The δ18O values of adult specimens decreased with increasing temperature in all but the 4 °C treatment, exhibiting a relationship consistent with previous δ18O paleotemperature calibration studies. Foraminiferal Mg/Ca values, determined by laser ablation inductively coupled plasma mass spectrometry, were broadly consistent with previous Mg/Ca calibration studies, but extremely high values in the 4 °C treatment and higher than predicted values at two of the other three temperatures make it challenging to interpret these results.
Spring molybdenum enrichment in scallop shells: a potential tracer of diatom productivity in temperate coastal environments (Brittany, NW France)
Authors: Barats A. , Amouroux D. , Pécheyran C. , Chauvaud L. , Thébault J. , Donard O. F. X.
Published: April 2010

Abstract. Skeletal molybdenum/calcium ([Mo]/[Ca])shell ratios were examined in shells of the Great Scallop Pecten maximus collected in temperate coastal environments of Western Europe (42 to 49° N). These ratios were determined by quantitative LA-ICP-MS analyses of daily striae taken every third day (i.e. a temporal resolution of 3 days) in 36 flat valves (2-years old; 3 shells/year). Variations of ([Mo]/[Ca])shell ratios were significant and reproducible for scallops from the same population, from different years (1998–2004) and temperate coastal locations (NW France). The [Mo]/[Ca])shell ratios exhibit typical profiles characterized by a background content, below the detection limit for this method (<0.003 μmol/mol) for most of the shell growth period, which is punctuated by a significant transient enrichment (0.031–2.1 μmol/mol) mainly occurring from May to June. The Bay of Brest (France) was investigated in particular because of its long term observations on scallop communities, environmental variables, and high resolution analyses of dissolved Mo in bottom seawater in 2000. In 2000, dissolved Mo exhibited a significant increase in concentration just preceding the maximum ([Mo]/[Ca])shell ratio. Both the intense monitoring survey in 2000 and over the 7-year period indicates that the ([Mo]/[Ca])shell maximum is directly influenced by spring changes of environmental conditions at the sediment water interface (SWI), occurring subsequent to the intense and periodic spring bloom. Spring maxima of ([Mo]/[Ca])shell ratios are closely correlated to the extent of silicic acid and nitrate depletion in seawater between winter and late spring (r2=0.878 and 0.780, p<0.05, n=6) that reflects diatom uptake and productivity in the Bay of Brest. The Mo inputs in bottom waters and subsequent shell enrichment are thus suggested to be directly or indirectly influenced by such biogenic material input at the SWI. The [Mo]/[Ca])shell records thus reveal unexpected biogeochemical cycles of Mo influenced by coastal spring productivity, faithfully recorded in scallop shells.
Process-based simulation of seasonality and drought stress in monoterpene emission models
Authors: Grote R. , Keenan T. , Lavoir A.-V. , Staudt M.
Published: April 2010

Abstract. Canopy emissions of volatile hydrocarbons such as isoprene and monoterpenes play an important role in air chemistry. They depend on various environmental conditions, are highly species-specific and are expected to be affected by global change. In order to estimate future emissions of these isoprenoids, differently complex models are available. However, seasonal dynamics driven by phenology, enzymatic activity, or drought stress strongly modify annual ecosystem emissions. Although these impacts depend themselves on environmental conditions, they have yet received little attention in mechanistic modelling. In this paper we propose the application of a mechanistic method for considering the seasonal dynamics of emission potential using the "Seasonal Isoprenoid synthase Model" (Lehning et al., 2001). We test this approach with three different models (GUENTHER, Guenther et al., 1993; NIINEMETS, Niinemets et al., 2002a; BIM2, Grote et al., 2006) that are developed for simulating light-dependent monoterpene emission. We also suggest specific drought stress representations for each model. Additionally, the proposed model developments are compared with the approach realized in the MEGAN (Guenther et al., 2006) emission model. Models are applied to a Mediterranean Holm oak (Quercus ilex) site with measured weather data. The simulation results demonstrate that the consideration of a dynamic emission potential has a strong effect on annual monoterpene emission estimates. The investigated models, however, show different sensitivities to the procedure for determining this seasonality impact. Considering a drought impact reduced the differences between the applied models and decreased emissions at the investigation site by approximately 33% on average over a 10 year period. Although this overall reduction was similar in all models, the sensitivity to weather conditions in specific years was different. We conclude that the proposed implementations of drought stress and internal seasonality strongly reduce estimated emissions and indicate the measurements that are needed to further evaluate the models.
Measuring and modeling continuous quality distributions of soil organic matter
Authors: Bruun S. , Ågren G. I. , Christensen B. T. , Jensen L. S.
Published: April 2010

Abstract. An understanding of the dynamics of soil organic matter (SOM) is important for our ability to develop management practices that preserve soil quality and sequester carbon. Most SOM decomposition models represent the heterogeneity of organic matter by a few discrete compartments with different turnover rates, while other models employ a continuous quality distribution. To make the multi-compartment models more mechanistic in nature, it has been argued that the compartments should be related to soil fractions actually occurring and having a functional role in the soil. In this paper, we make the case that fractionation methods that can measure continuous quality distributions should be developed, and that the temporal development of these distributions should be incorporated into SOM models. The measured continuous SOM quality distributions should hold valuable information not only for model development, but also for direct interpretation. Measuring continuous distributions requires that the measurements along the quality variable are so frequent that the distribution approaches the underlying continuum. Continuous distributions lead to possible simplifications of the model formulations, which considerably reduce the number of parameters needed to describe SOM turnover. A general framework for SOM models representing SOM across measurable quality distributions is presented and simplifications for specific situations are discussed. Finally, methods that have been used or have the potential to be used to measure continuous quality SOM distributions are reviewed. Generally, existing fractionation methods will have to be modified to allow measurement of distributions or new fractionation techniques will have to be developed. Developing the distributional models in concert with the fractionation methods to measure the distributions will be a major task. We hope the current paper will help generate the interest needed to accommodate this.
Heat storage in forest biomass improves energy balance closure
Authors: Lindroth A. , Mölder M. , Lagergren F.
Published: April 2010

Abstract. Temperature measurements in trunks and branches in a mature ca. 100 years-old mixed pine and spruce forest in central Sweden were used to estimate the heat storage in the tree biomass. The estimated heat flux in the sample trees and data on biomass distributions were used to scale up to stand level biomass heat fluxes. The rate of change of sensible and latent heat storage in the air layer below the level of the flux measurements was estimated from air temperature and humidity profile measurements and soil heat flux was estimated from heat flux plates and soil temperature measurements. The fluxes of sensible and latent heat from the forest were measured with an eddy covariance system in a tower. The analysis was made for a two-month period in summer of 1995. The tree biomass heat flux was the largest of the estimated storage components and varied between 40 and −35 W m−2 on summer days with nice weather. Averaged over two months the diurnal maximum of total heat storage was 45 W m−2 and the minimum was −35 W m−2. The soil heat flux and the sensible heat storage in air were out of phase with the biomass flux and they reached maximum values that were about 75% of the maximum of the tree biomass heat storage. The energy balance closure improved significantly when the total heat storage was added to the turbulent fluxes. The slope of a regression line with sum of fluxes and storage as independent and net radiation as dependent variable, increased from 0.86 to 0.95 for half-hourly data and the scatter was also reduced. The most significant finding was, however, that during nights with strongly stable conditions when the sensible heat flux dropped to nearly zero, the total storage matched the net radiation very well. Another interesting result was that the mean energy imbalance started to increase when the Richardson number became more negative than ca. −0.1. In fact, the largest energy deficit occurred at maximum instability. Our conclusion is that eddy covariance measurements can function well during stable conditions but that the functioning under strong instabilities might be a so far unforeseen problem.
A kinetic analysis of leaf uptake of COS and its relation to transpiration, photosynthesis and carbon isotope fractionation
Authors: Seibt U. , Kesselmeier J. , Sandoval-Soto L. , Kuhn U. , Berry J. A.
Published: April 2010

Abstract. Carbonyl sulfide (COS) is an atmospheric trace gas that holds great promise for studies of terrestrial carbon and water exchange. In leaves, COS follows the same pathway as CO2 during photosynthesis. Both gases are taken up in enzyme reactions, making COS and CO2 uptake closely coupled at the leaf scale. The biological background of leaf COS uptake is a hydrolysis reaction catalyzed by the enzyme carbonic anhydrase. Based on this, we derive and test a simple kinetic model of leaf COS uptake, and relate COS to CO2 and water fluxes at the leaf scale. The equation was found to predict realistic leaf COS fluxes compared to observations from field and laboratory chambers. We confirm that COS uptake at the leaf level is directly linked to stomatal conductance. As a consequence, the ratio of normalized uptake rates (uptake rates divided by ambient mole fraction) for leaf COS and CO2 fluxes can provide an estimate of Ci/Ca, the ratio of intercellular to atmospheric CO2, an important plant gas exchange parameter that cannot be measured directly. The majority of published normalized COS to CO2 uptake ratios for leaf studies on a variety of species fall in the range of 1.5 to 4, corresponding to Ci/Ca ratios of 0.5 to 0.8. In addition, we utilize the coupling of Ci/Ca and photosynthetic 13C discrimination to derive an estimate of 2.8±0.3 for the global mean normalized uptake ratio. This corresponds to a global vegetation sink of COS in the order of 900±100 Gg S yr−1. COS can now be implemented in the same model framework as CO2 and water vapour. Atmospheric COS measurements can then provide independent constraints on CO2 and water cycles at ecosystem, regional and global scales.
Summer microplankton community structure across the Scotia Sea: implications for biological carbon export
Authors: Korb R. E. , Whitehouse M. J. , Gordon M. , Ward P. , Poulton A. J.
Published: April 2010

Abstract. During the austral summer of 2008, we carried out a high resolution survey of the microplankton communities along a south to north transect covering a range of environments across the Scotia Sea, Southern Ocean; high and low productivity, sea-ice to open water conditions, and over a number of oceanographic fronts and bathymetric features. Cluster analysis revealed five distinct communities that were geographically constrained by physical features of bathymetry and fronts. From south to north the communities were: (1) the South Orkney group, a mixed community of naked dinoflagellates and heavily silicified diatoms, (2) southern Scotia Sea, a mixed community of cyptophytes and naked dinoflagellates, (3) central Scotia Sea, dominated by naked dinoflagellates, (4) southwest of the island of South Georgia, lightly silicified diatoms and naked dinoflagellates (5) northwest of South Georgia, dominated by diatoms. Data from a previous summer cruise (2003) to the Scotia Sea followed a similar pattern of community distribution. MODIS images, Chlorophyll a and macronutrient deficits revealed dense phytoplankton blooms occurred around the island of South Georgia, were absent near the ice edge and in the central Scotia Sea and were moderate in the southern Scotia Sea. Using these environmental factors, together with community composition, we propose that south of the Southern Antarctic Circumpolar Current Front, biogenic silica is preferentially exported and north of the front, in the vicinity of South Georgia, carbon is exported to depth.
Ecosystem carbon exchanges of a subtropical evergreen coniferous plantation subjected to seasonal drought, 2003–2007
Authors: Wen X.-F. , Wang H.-M. , Wang J.-L. , Yu G.-R. , Sun X.-M.
Published: April 2010

Abstract. The behavior of whole ecosystems in humid climate zone in response to drought is less well documented. Continuous measurements of carbon dioxide and water vapor exchange using the eddy covariance technique during 2003–2007 were made above a subtropical evergreen coniferous plantation in Southeast China. Seasonal distribution of precipitation and temperature was inconsistent during the summer, which resulted in droughts frequently. Gross ecosystem photosynthesis (GEP), ecosystem respiration (RE) and net ecosystem production (NEP) showed clear seasonality, with low rates during droughts and in winter. With statistical significance, the monthly GEP and RE increased exponentially with air temperature, but the monthly NEP was less sensitive and only increased linearly with air temperature. However, the function response of monthly NEP and its components (GEP and RE) disappeared under high temperature and low soil moisture. Monthly and yearly RE showed a statistically linear and positive dependence on the corresponding GEP. Annual NEP varied among years from 306 to 430 g C m−2 (mean 395, SD 50). Interannual variability in NEP was controlled primarily by air temperature and the ratio of precipitation and evapotranspiration that affected the RE/GEP ratio, which varied between 0.76 and 0.81 (mean 0.78, SD 0.02).
Interannual variability of alongshore spring bloom dynamics in a coastal sea caused by the differential influence of hydrodynamics and light climate
Authors: Brandt G. , Wirtz K. W.
Published: April 2010

Abstract. Timing and spatial distribution of phytoplankton blooms in coastal oceans are highly variable. The interactions of various biological and physical factors leading to the observed variability are complex and remain poorly understood. We present an example for distinct differences in the spatio-temporal chlorophyll a (CHL-a) distribution on an interannual scale, integrating high-frequency data from an autonomous measuring device (FerryBox), which operated on an alongshore route in the coastal German Bight (North Sea). While in one year the distribution of CHL-a was spatially homogeneous (2004), a bloom only developed in one part of the transect in the following spring period (2005). We use a one-dimensional Lagrangian particle tracking model, which operates along the mean current direction, combined with a NPZ-model to identify the mechanisms controlling the observed interannual bloom variability on the alongshore transect. Our results clearly indicate that in 2004 the local light climate determined the spatial and temporal dynamics of the spring bloom. In contrast, the import of a water mass with elevated CHL-a concentrations from the adjacent Southern Bight triggered the spring bloom in 2005. The inflow event did, however, not last long enough to spread the bloom into the eastern part of the study area, where high turbidity prevented local phytoplankton growth. The model identifies two interacting mechanisms, light climate and hydrodynamics, that controlled the alongshore dynamics. Especially the occurrence of a pronounced spring bloom despite unfavourable light conditions in 2005 underlines the need to carefully consider hydrodynamics to understand the dynamics of the plankton community in coastal environments.
A possible role of ground-based microorganisms on cloud formation in the atmosphere
Authors: Ekström S. , Nozière B. , Hultberg M. , Alsberg T. , Magnér J. , Nilsson E. D. , Artaxo P.
Published: April 2010

Abstract. The formation of clouds is an important process for the atmosphere, the hydrological cycle, and climate, but some aspects of it are not completely understood. In this work, we show that microorganisms might affect cloud formation without leaving the Earth's surface by releasing biological surfactants (or biosurfactants) in the environment, that make their way into atmospheric aerosols and could significantly enhance their activation into cloud droplets. In the first part of this work, the cloud-nucleating efficiency of standard biosurfactants was characterized and found to be better than that of any aerosol material studied so far, including inorganic salts. These results identify molecular structures that give organic compounds exceptional cloud-nucleating properties. In the second part, atmospheric aerosols were sampled at different locations: a temperate coastal site, a marine site, a temperate forest, and a tropical forest. Their surface tension was measured and found to be below 30 mN/m, the lowest reported for aerosols, to our knowledge. This very low surface tension was attributed to the presence of biosurfactants, the only natural substances able to reach to such low values. The presence of strong microbial surfactants in aerosols would be consistent with the organic fractions of exceptional cloud-nucleating efficiency recently found in aerosols, and with the correlations between algae bloom and cloud cover reported in the Southern Ocean. The results of this work also suggest that biosurfactants might be common in aerosols and thus of global relevance. If this is confirmed, a new role for microorganisms on the atmosphere and climate could be identified.
A case study of eddy covariance flux of N2O measured within forest ecosystems: quality control and flux error analysis
Authors: Mammarella I. , Werle P. , Pihlatie M. , Eugster W. , Haapanala S. , Kiese R. , Markkanen T. , Rannik Ü. , Vesala T.
Published: April 2010

Abstract. Eddy covariance (EC) flux measurements of nitrous oxide (N2O) obtained by using a 3-D sonic anemometer and a tunable diode laser gas analyzer for N2O were investigated. Two datasets (Sorø, Denmark and Kalevansuo, Finland) from different measurement campaigns including sub-canopy flux measurements of energy and carbon dioxide are discussed with a focus on selected quality control aspects and flux error analysis. Although fast response trace gas analyzers based on spectroscopic techniques are increasingly used in ecosystem research, their suitability for reliable estimates of EC fluxes is still limited, and some assumptions have to be made for filtering and processing data. The N2O concentration signal was frequently dominated by offset drifts (fringe effect), which can give an artificial extra contribution to the fluxes when the resulting concentration fluctuations are correlated with the fluctuations of the vertical wind velocity. Based on Allan variance analysis of the N2O signal, we found that a recursive running mean filter with a time constant equal to 50 s was suitable to damp the influence of the periodic drift. Although the net N2O fluxes over the whole campaign periods were quite small at both sites (~5 μg N m−2 h−1 for Kalevansuo and ~10 μg N m−2 h−1 for Sorø), the calculated sub-canopy EC fluxes were in good agreement with those estimated by automatic soil chambers. However, EC N2O flux measurements show larger random uncertainty than the sensible heat fluxes, and classification according to statistical significance of single flux values indicates that downward N2O fluxes have larger random error.