bluuebunny/crossref_metadata_2025 huggingface dataset:
Provisional stenting with side branch rescue stenting is associated with increased 3-year target lesion failure in patients with acute coronary syndrome and coronary bifurcation lesions
Authors: Sheiban Imad , Ge Zhen , Kan Jing , Zhang Jun-Jie , Santoso Teguh , Munawar Muhammad , Ye Fei , Tian Nailiang , Chen Shao-Liang
Published: October 2022

Background

Provisional stenting (PS) is the main treatment for a majority of coronary bifurcation lesion and includes PS with 1-stent and PS with 2-stent. However, the treatment difference between PS with 1-stent and with 2-stent remains unclear in patients with the acute coronary syndrome (ACS) and coronary bifurcation lesions.

Materials and methods

Overall, 820 ACS patients with Medina 1,1,1 or 0,1,1 coronary bifurcation lesion who had completed 3-year follow-up were included and assigned to the PS with 1-stent (n = 519) or the PS with 2-stent (n = 301) according to the use of final stenting technique. The primary endpoint was the target lesion failure (TLF) at 3 years since stenting procedures.

Results

At 3-year follow-up, TLF occurred in 85 (16.4%) patients in the PS with 1-stent group and 69 (22.9%) in the PS with 2-stent group (hazard ratio [HR] 1.52, 95% confidence interval [CI] 1.06–2.17, p = 0.021), mainly driven by a higher rate of target lesion revascularization (TLR) in the PS with 2-stent group (13.0% vs. 8.3%, HR 1.65, 95% CI 1.04–2.61, p = 0.033). Complex bifurcations, side branch (SB) pretreatment, intravascular imaging guidance, and hyperlipidemia were the four predictors for 3-year TLF. SB pretreatment was associated with increased 3-year TLR, leading to an extremely higher 3-year TLF.

Conclusion

Provisional with 2-stent for patients with ACS is associated with a higher rate of 3-year TLF, mainly due to increased requirement of revascularization. SB pretreatment should be avoided for simple bifurcation lesion.
Crosstalk between high-density lipoproteins and endothelial cells in health and disease: Insights into sex-dependent modulation
Authors: Dietrich Elisa , Jomard Anne , Osto Elena
Published: October 2022

Atherosclerotic cardiovascular disease is the leading cause of death worldwide. Intense research in vascular biology has advanced our knowledge of molecular mechanisms of its onset and progression until complications; however, several aspects of the patho-physiology of atherosclerosis remain to be further elucidated. Endothelial cell homeostasis is fundamental to prevent atherosclerosis as the appearance of endothelial cell dysfunction is considered the first pro-atherosclerotic vascular modification. Physiologically, high density lipoproteins (HDLs) exert protective actions for vessels and in particular for ECs. Indeed, HDLs promote endothelial-dependent vasorelaxation, contribute to the regulation of vascular lipid metabolism, and have immune-modulatory, anti-inflammatory and anti-oxidative properties. Sex- and gender-dependent differences are increasingly recognized as important, although not fully elucidated, factors in cardiovascular health and disease patho-physiology. In this review, we highlight the importance of sex hormones and sex-specific gene expression in the regulation of HDL and EC cross-talk and their contribution to cardiovascular disease.
3D seismic imaging of the Nesjavellir geothermal field, SW-Iceland
Authors: Amoroso Ortensia , Napolitano Ferdinando , Hersir Gylfi Pall , Agustsdottir Thorbjorg , Convertito Vincenzo , De Matteis Raffaella , Gunnarsdóttir Sveinborg Hlíf , Hjörleifsdóttir Vala , Capuano Paolo
Published: October 2022

We present a detailed seismic imaging of the harnessed Nesjavellir geothermal area, SW-Iceland, which is one of several geothermal fields on the flanks of the Hengill volcano. We map thevP,vS, andvPvSratio using seismic data recorded in 2016–2020 and compare them with both a resistivity model of the same area and the rock temperature as measured in boreholes. The results show that the shallower crust (depth less than 1 km) is characterized by lowvPandvS, and highvPvSratio (around 1.9). Shallow low resistivity values at similar depths in the same area have been interpreted as the smectite clay cap of the system. At depths between 1 and 3 km the observed lowvPvSratio of 1.64–1.70 correlates with high resistivity values. In this area, characterized by temperatures larger than 240°C, the seismicity appears to be sparse and located close to the production wells. This seismicity has been interpreted as induced by the production in combination with naturally occurring earthquakes. At depths greater than 4 km, highvPvSratio of 1.9 correlates well with low resistivity values. In the valley of Nesjavellir, a deep-seated conductive body, domes up at about 4.500 m b.sl. and coincides spatially with a significant highvPvSratio anomaly (>1.9). Above these anomalies an elevated temperature is registered according to borehole temperature data. This is proposed here to be caused by hot 600°C–900°C cooling intrusives, close to the brittle ductile transition—probably the heat source(s) of the geothermal field above. These anomalies are at the same location as the last fissure eruption in Hengill almost 2,000 years ago. The NNE-SSW trending, deeper seismic cluster at 3–6 km depth is located at the edge of this highvPvSanomaly. The heat source of the Nesjavellir geothermal field is most likely connected to this most recent volcanism as reflected by the deep-seated low resistivity body and highvPvSratio, located beneath the deep fault that connects the flow path of the high temperature geothermal fluid, resulting in an actively producing reservoir.
A systematic review on the role of melatonin and its mechanisms on diabetes-related reproductive impairment in non-clinical studies
Authors: Armandeh Maryam , Bameri Behnaz , Haghi-Aminjan Hamed , Foroumadi Roham , Ataei Mahshid , Hassani Shokoufeh , Samadi Mahedeh , Shayesteh Mohammad Reza Hooshangi , Abdollahi Mohammad
Published: October 2022

Background

Diabetes-induced reproductive complications can lead to subfertility and infertility, raising the need to protect reproductive organs. There are limited medications used to improve reproductive health in diabetic patients. Melatonin, mainly produced by the pineal gland, may improve diabetes-associated reproductive complications through various mechanisms and may be a preferred candidate to protect the reproductive system. The present review aims to elucidate the underlying mechanisms of melatonin’s effect on the reproductive system adversely affected by diabetes mellitus (DM).

Methods

A comprehensive systematic literature electronic search was done using the PRISMA guidelines. Web of Science, PubMed, Embase, and Scopus were searched for publications up to June 2022. Search terms were selected based on the study purpose and were explored in titles and abstracts. After screening, out of a total of 169 articles, 14 pertinent articles were included based on our inclusion and exclusion criteria.

Results

The results of studies using rats and mice suggest that DM adversely affects reproductive tissues, including testes and epididymis, prostate, corpus cavernosum, and ovary leading to alterations in histological and biochemical parameters compared to the normal groups. Treatment with melatonin improves oxidative stress, blocks apoptosis induced by endoplasmic reticulum stress and caspase activation, reduces pro-inflammation cytokines, and enhances steroidogenesis.

Conclusion

Melatonin exerted a protective action on the impaired reproductive system in in-vivo and in-vitro models of DM. The topic has to be followed up in human pregnancy cases that will need more time to be collected and approved.
Associations between COVID-19 infection and sex steroid hormones
Authors: Cai Zixin , Zhong Jiaxin , Jiang Yingling , Zhang Jingjing
Published: October 2022

Aims

Coronavirus disease 2019 (COVID-19) is caused by infection with severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), and within a few months of the first outbreak, it was declared a global pandemic by the WHO. The lethal virus SARS-CoV-2 is transmitted through respiratory droplets and enters host cells through angiotensin-converting enzyme 2 (ACE-2) receptors. ACE-2 receptors are highly expressed in many tissues, including testes. Therefore, the objective of this study was to summarize the available literature regarding the correlation between sex hormone levels and COVID-19.

Methods

The PubMed, Web of Science, Embase, and Cochrane Library databases were reviewed systematically through August 2022 for studies comparing sex hormone levels between different patient groups: COVID-19 versus no COVID-19, more severe versus less severe COVID-19, and non-survivors versus survivors. Various types of clinical research reporting sex hormone levels, including free testosterone (FT), luteinizing hormone (LH), follicle-stimulating hormone (FSH), 17β-oestradiol (E2), the oestradiol-to-testosterone ratio (E2/T), prolactin (PRL), and sex hormone-binding globulin (SHBG), were included. Random- or fixed-effects models were used to calculate weighted mean differences (WMDs) and 95% confidence intervals (CIs). Heterogeneity among the studies was assessed by the I2 index, and data analyses were performed using meta-analysis with Stata version 12.0.

Results

Twenty-two articles that included 3369 patients were ultimately included in the meta-analysis. According to analysis of the included studies, patients with COVID-19 had significantly low T/LH, FSH/LH, and SHBG levels and high levels of LH, and E2/T, but their levels of FT, FSH, PRL, E2, and progesterone were not affected. Publication bias was not found according to funnel plots and Egger’s regression and Begg’s rank correlation tests.

Conclusion

Low T/LH, FSH/LH, and SHBG serum levels and high LH, and E2/T levels may increase the risk of COVID-19. Additionally, the greater is the clinical severity of COVID-19, the higher is the probability of increases in LH, and E2/T serum levels and decreases in T/LH, FSH/LH, and SHBG levels. COVID-19 may have unfavourable effects on gonadal functions, which should be taken seriously by clinicians. Routine monitoring of sex hormone levels might help clinicians to evaluate disease severity in patients with COVID-19.
Bone health in functional hypothalamic amenorrhea: What the endocrinologist needs to know
Authors: Indirli Rita , Lanzi Valeria , Mantovani Giovanna , Arosio Maura , Ferrante Emanuele
Published: October 2022

In the original definition by Klinefelter, Albright and Griswold, the expression “hypothalamic hypoestrogenism” was used to describe functional hypothalamic amenorrhoea (FHA). Given the well-known effects of estrogens on bone, the physiopathology of skeletal fragility in this condition may appear self-explanatory. Actually, a growing body of evidence has clarified that estrogens are only part of the story. FHA occurs in eating disorders, overtraining, and during psychological or physical stress. Despite some specific characteristics which differentiate these conditions, relative energy deficiency is a common trigger that initiates the metabolic and endocrine derangements contributing to bone loss. Conversely, data on the impact of amenorrhoea on bone density or microarchitecture are controversial, and reduced bone mass is observed even in patients with preserved menstrual cycle. Consistently, oral estrogen-progestin combinations have not proven beneficial on bone density of amenorrheic women. Low bone density is a highly prevalent finding in these patients and entails an increased risk of stress or fragility fractures, and failure to achieve peak bone mass and target height in young girls. Pharmacological treatments have been studied, including androgens, insulin-like growth factor-1, bisphosphonates, denosumab, teriparatide, leptin, but none of them is currently approved for use in FHA. A timely screening for bone complications and a multidisciplinary, customized approach aiming to restore energy balance, ensure adequate protein, calcium and vitamin D intake, and reverse the detrimental metabolic-endocrine changes typical of this condition, should be the preferred approach until further studies are available.
Employment of Cannabis sativa biochar to improve soil nutrient pool and metal immobilization
Authors: Anjum Zufishan , Min Qi , Riaz Luqman , Waqar-Un-Nisa  , Qadeer Samia , Saleem Aansa Rukya
Published: October 2022

Soil pollution with heavy metals has become a global issue because of anthropogenic activities causing gradual loss of soil nutrients and fertility, thus, reducing agricultural production. Biochar is recommended as an organic and environment-friendly option to address the issue of nutrient deficiency and heavy metal pollution. The present study was performed with biochar derived from Cannabis sativa to surplus soil nutrient pool and heavy metal immobilization. The characterization through scanning electron microscopy (SEM) revealed that biochar was brittle, porous, alkaline, and labile in nature. The elemental composition of biochar was carbon (75.3%), oxygen (19.2%), calcium (3.9%), potassium (1.5%), and chlorine (0.08%) determined by energy dispersive X-ray spectroscopy. Fourier transform infrared (FTIR) spectroscopy revealed the occurrence of carbonyl group, phenols, and alcohols in biochar derived from Cannabis sativa. The soil was spiked with lead and cadmium salt solution (25 ppm and 250) and incubated for 30 days. It was found that biochar amendments (1% = BC1 and 5% = BC5) significantly (p < 0.05) increased the soil physicochemical properties such as pH, electrical conductivity (EC), oxidizable organic carbon (OC), total organic carbon (TOC), and organic matter (OM). In the case of BC5, OC increased by 189.86%, TOC increased by 189.13%, and OM increased by 188.68%, as compared to the control. Similarly, soil available nitrogen (AN) and soil available phosphorous improved by 233.3% and 101.79%, respectively, compared to control. On the other hand, BC1 showed a significant reduction (p < 0.05) in lead and cadmium concentrations by 45.74% and 56.58%, respectively, in comparison to BC5 and control. In conclusion, we suggest that Cannabis sativa biochar may serve as an effective treatment for enhancing soil fertility and remediation of soil polluted with heavy metals.
The spatio-temporal changes of cropping patterns in the black soil area of China: Lessons from Wangkui County
Authors: Du Guoming , Yao Longcheng , Hou Dawei
Published: October 2022

A reasonable planting crop pattern can effectively contribute to maintaining soil fertility and ensuring stable crop growth in the black soil regions of China. This study aimed to analyze the evolution of cropping patterns in Wangkui County between 2002 and 2021. By using ArcGIS and ENVI software, during which visual interpretation was applied, we interpreted three crop rotation cycles based on the classification data of remote-sensing inversion crops for 2002–2005, 2010–2013, and 2018–2021. Our results indicated that maize, rice, and soybean were the three major crops which accounted for a total of 87.02% of the farmland during our study period, while the cropping pattern was dominated by continuous maize cultivation (31.25%), mixed cultivation (29.01%), and continuous maize–soybean cultivation (24.48%). Specifically, the continuous maize cultivation was mainly distributed in the south-central and west-central parts, whereas continuous rice cultivation spread from the northwest to the southwest. In addition, the rice–soybean rotation tended to gather in the southwest and north and spread to the central part, and the rice–maize rotation presented a tendency of radiation diffusion from the county’s northwest region to the surrounding areas. This study could provide a practical basis for establishing high-yield and efficient planting models in the black soil areas of China.
TransCluster: A Cell-Type Identification Method for single-cell RNA-Seq data using deep learning based on transformer
Authors: Song Tao , Dai Huanhuan , Wang Shuang , Wang Gan , Zhang Xudong , Zhang Ying , Jiao Linfang
Published: October 2022

Recent advances in single-cell RNA sequencing (scRNA-seq) have accelerated the development of techniques to classify thousands of cells through transcriptome profiling. As more and more scRNA-seq data become available, supervised cell type classification methods using externally well-annotated source data become more popular than unsupervised clustering algorithms. However, accurate cellular annotation of single cell transcription data remains a significant challenge. Here, we propose a hybrid network structure called TransCluster, which uses linear discriminant analysis and a modified Transformer to enhance feature learning. It is a cell-type identification tool for single-cell transcriptomic maps. It shows high accuracy and robustness in many cell data sets of different human tissues. It is superior to other known methods in external test data set. To our knowledge, TransCluster is the first attempt to use Transformer for annotating cell types of scRNA-seq, which greatly improves the accuracy of cell-type identification.
Review of prostate cancer genomic studies in Africa
Authors: Samtal Chaimae , El Jaddaoui Islam , Hamdi Salsabil , Bouguenouch Laila , Ouldim Karim , Nejjari Chakib , Ghazal Hassan , Bekkari Hicham
Published: October 2022

Prostate cancer (PCa) is the second most commonly diagnosed in men worldwide and one of the most frequent cancers in men in Africa. The heterogeneity of this cancer fosters the need to identify potential genetic risk factors/biomarkers. Omics variations may significantly contribute to early diagnosis and personalized treatment. However, there are few genomic studies of this disease in African populations. This review sheds light on the status of genomics research on PCa in Africa and outlines the common variants identified thus far. The allele frequencies of the most significant SNPs in Afro-native, Afro-descendants, and European populations were compared. We advocate how these few but promising data will aid in understanding, better diagnosing, and precisely treating this cancer and the need for further collaborative research on the genomics of PCa in the African continent.
Clinical cancer immunotherapy: Current progress and prospects
Authors: Liu Chenglong , Yang Mengxuan , Zhang Daizhou , Chen Ming , Zhu Di
Published: October 2022

Immune checkpoint therapy via PD-1 antibodies has shown exciting clinical value and robust therapeutic potential in clinical practice. It can significantly improve progression-free survival and overall survival. Following surgery, radiotherapy, chemotherapy, and targeted therapy, cancer treatment has now entered the age of immunotherapy. Although cancer immunotherapy has shown remarkable efficacy, it also suffers from limitations such as irAEs, cytokine storm, low response rate, etc. In this review, we discuss the basic classification, research progress, and limitations of cancer immunotherapy. Besides, by combining cancer immunotherapy resistance mechanism with analysis of combination therapy, we give our insights into the development of new anticancer immunotherapy strategies.
Remodeling the bladder tumor immune microenvironment by mycobacterial species with changes in their cell envelope composition
Authors: Senserrich Jordi , Guallar-Garrido Sandra  , Gomez-Mora Elisabet , Urrea Victor , Clotet Bonaventura , Julián Esther , Cabrera Cecilia
Published: October 2022

Intravesical BCG instillation after bladder tumor resection is the standard treatment for non-muscle invasive bladder cancer; however, it is not always effective and frequently has undesirable side effects. Therefore, new strategies that improve the clinical management of patients are urgently needed. This study aimed to comprehensively evaluate the bladder tumor immune microenvironment profile after intravesical treatment with a panel of mycobacteria with variation in their cell envelope composition and its impact on survival using an orthotopic murine model to identify more effective and safer therapeutic strategies. tumor-bearing mice were intravesically treated with a panel of BCG and M. brumae cultured under different conditions. Untreated tumor-bearing mice and healthy mice were also included as controls. After mycobacterial treatments, the infiltrating immune cell populations in the bladder were analysed by flow cytometry. We provide evidence that mycobacterial treatment triggered a strong immune infiltration into the bladder, with BCG inducing higher global absolute infiltration than M. brumae. The induced global immune microenvironment was strikingly different between the two mycobacterial species, affecting both innate and adaptive immunity. Compared with M. brumae, BCG treated mice exhibited a more robust infiltration of CD4+ and CD8+ T-cells skewed toward an effector memory phenotype, with higher frequencies of NKT cells, neutrophils/gMDSCs and monocytes, especially the inflammatory subset, and higher CD4+ TEM/CD4+ Treg and CD8+ TEM/CD4+ Treg ratios. Conversely, M. brumae treatment triggered higher proportions of total activated immune cells and activated CD4+ and CD8+ TEM cells and lower ratios of CD4+ TEM cells/CD4+ Tregs, CD8+ TEM cells/CD4+ Tregs and inflammatory/reparative monocytes. Notably, the mycobacterial cell envelope composition in M. brumae had a strong impact on the immune microenvironment, shaping the B and myeloid cell compartment and T-cell maturation profile and thus improving survival. Overall, we demonstrate that the bladder immune microenvironment induced by mycobacterial treatment is species specific and shaped by mycobacterial cell envelope composition. Therefore, the global bladder immune microenvironment can be remodelled, improving the quality of infiltrating immune cells, the balance between inflammatory and regulatory/suppressive responses and increasing survival.
Impact of the host response and osteoblast lineage cells on periodontal disease
Authors: Zhou Mi , Graves Dana T.
Published: October 2022

Periodontitis involves the loss of connective tissue attachment and alveolar bone. Single cell RNA-seq experiments have provided new insight into how resident cells and infiltrating immune cells function in response to bacterial challenge in periodontal tissues. Periodontal disease is induced by a combined innate and adaptive immune response to bacterial dysbiosis that is initiated by resident cells including epithelial cells and fibroblasts, which recruit immune cells. Chemokines and cytokines stimulate recruitment of osteoclast precursors and osteoclastogenesis in response to TNF, IL-1β, IL-6, IL-17, RANKL and other factors. Inflammation also suppresses coupled bone formation to limit repair of osteolytic lesions. Bone lining cells, osteocytes and periodontal ligament cells play a key role in both processes. The periodontal ligament contains cells that exhibit similarities to tendon cells, osteoblast-lineage cells and mesenchymal stem cells. Bone lining cells consisting of mesenchymal stem cells, osteoprogenitors and osteoblasts are influenced by osteocytes and stimulate formation of osteoclast precursors through MCSF and RANKL, which directly induce osteoclastogenesis. Following bone resorption, factors are released from resorbed bone matrix and by osteoclasts and osteal macrophages that recruit osteoblast precursors to the resorbed bone surface. Osteoblast differentiation and coupled bone formation are regulated by multiple signaling pathways including Wnt, Notch, FGF, IGF-1, BMP, and Hedgehog pathways. Diabetes, cigarette smoking and aging enhance the pathologic processes to increase bone resorption and inhibit coupled bone formation to accelerate bone loss. Other bone pathologies such as rheumatoid arthritis, post-menopausal osteoporosis and bone unloading/disuse also affect osteoblast lineage cells and participate in formation of osteolytic lesions by promoting bone resorption and inhibiting coupled bone formation. Thus, periodontitis involves the activation of an inflammatory response that involves a large number of cells to stimulate bone resorption and limit osseous repair processes.
Cell size is a key ecological trait associated with biogeographic patterns of microbial eukaryotes in coastal waters
Authors: Wu Wenxue , Liu Hongbin
Published: October 2022

Body size is an important ecological trait, but it has been poorly explored in microbial communities. Here, we examined the effect of cell size on coastal eukaryotic communities across a size continuum of 0.2–3 (pico-), 3–20 (nano-), and 20–200 μm (micro-sized), which were characterized via high-throughput sequencing based on the V4 region of the 18S rRNA gene. We found that, at the alpha diversity level, there was a decreasing trend across the pico-, nano-, and micro-sized eukaryotic communities regarding both amplicon sequence variant (ASV) richness and Shannon index. At the beta diversity level, the three categories were significantly different, and these were accompanied by a relatively high local contribution to beta diversity in contrasting freshwater and seawater locations. The community variations observed for the microbial eukaryotes could largely be explained by the environmental effects which decreased between the pico- (40.5%), nano- (37.3%), and micro-sized (27.3%) fractions. These environmental effects were mainly contributed by several ASV modules showing opposing responses to environmental conditions. This might partly indicate the coalescence of the freshwater and seawater groups of microbial eukaryotes. In summary, our findings suggest that the cell size of microbial eukaryotes is a phylogenetically conserved trait, which is tightly associated with biogeographic patterns.
Efficient reconstruction of prior austenite grains in steel from etched light optical micrographs using deep learning and annotations from correlative microscopy
Authors: Bachmann Björn-Ivo , Müller Martin , Britz Dominik , Durmaz Ali Riza , Ackermann Marc , Shchyglo Oleg , Staudt Thorsten , Mücklich Frank
Published: October 2022

The high-temperature austenite phase is the initial state of practically all technologically relevant hot forming and heat treatment operations in steel processing. The phenomena occurring in austenite, such as recrystallization or grain growth, can have a decisive influence on the subsequent properties of the material. After the hot forming or heat treatment process, however, the austenite transforms into other microstructural constituents and information on the prior austenite morphology are no longer directly accessible. There are established methods available for reconstructing former austenite grain boundaries via metallographic etching or electron backscatter diffraction (EBSD) which both exhibit shortcomings. While etching is often difficult to reproduce and strongly depend on the investigated steel’s alloying concept, EBSD acquisition and reconstruction is rather time-consuming. But in fact, though, light optical micrographs of steels contrasted with conventional Nital etchant also contain information about the former austenite grains. However, relevant features are not directly apparent or accessible with conventional segmentation approaches. This work presents a deep learning (DL) segmentation of prior austenite grains (PAG) from Nital etched light optical micrographs. The basis for successful segmentation is a correlative characterization from EBSD, light and scanning electron microscopy to specify the ground truth required for supervised learning. The DL model shows good and robust segmentation results. While the intersection over union of 70% does not fully reflect the model performance due to the inherent uncertainty in PAG estimation, a mean error of 6.1% in mean grain size derived from the segmentation clearly shows the high quality of the result.
Integrative transcriptome analysis revealed the pathogenic molecular basis of Rhizoctonia solani AG-3 TB at three progressive stages of infection
Authors: Li Xinchun , An Mengnan , Xu Chuantao , Jiang Lianqiang , Yan Fangfang , Yang Yang , Zhang Chong , Wu Yuanhua
Published: October 2022

Rhizoctonia solani has a broad host range and results in significant losses in agricultural production. Here, an integrated transcriptomic analysis was performed to reveal the critical genes responsible for the pathogenesis of R. solani AG-3 TB on Nicotiana tabacum at different infection stages. The results showed that various differential expressed genes (DEGs) were enriched in fatty acid metabolism, amino sugar, carbon metabolism, and cellular carbohydrate biosynthetic process at the early (6–12 hpi), middle (24–36 hpi), and late stage (48–72 hpi) of infection. Specifically, several critical genes such as shikimate kinase that were involved in the biosynthesis of an important fungal toxin, phenylacetic acid (PAA) showed markedly increase at 24 hpi. Additionally, the genes expression levels of carbohydrate-active enzymes (CAZymes) and cell wall degrading enzymes (CWDEs) were significantly increased at the late infection stage. Furthermore, we identified 807 potential secreted proteins and 78 small cysteine-rich proteins, which may function as fungal effectors and involved in the pathogenicity. These results provide valuable insights into critical and potential genes as well as the pathways involved in the pathogenesis of R. solani AG-3 TB.
Antibacterial activity of peptaibols from Trichoderma longibrachiatum SMF2 against gram-negative Xanthomonas oryzae pv. oryzae, the causal agent of bacterial leaf blight on rice
Authors: Zhang Yu-Qiang , Zhang Shan , Sun Mei-Ling , Su Hai-Nan , Li Hao-Yang , Kun-Liu  , Zhang Yu-Zhong , Chen Xiu-Lan , Cao Hai-Yan , Song Xiao-Yan
Published: October 2022

Bacterial leaf blight caused by Gram-negative pathogen Xanthomonas oryzae pv. oryzae (Xoo) is one of the most destructive bacterial diseases on rice. Due to the resistance, toxicity and environmental issues of chemical bactericides, new biological strategies are still in need. Although peptaibols produced by Trichoderma spp. can inhibit the growth of several Gram-positive bacteria and plant fungal pathogens, it still remains unclear whether peptaibols have anti-Xoo activity to control bacterial leaf blight on rice. In this study, we evaluated the antibacterial effects of Trichokonins A (TKA), peptaibols produced by Trichoderma longibrachiatum SMF2, against Xoo. The in vitro antibacterial activity analysis showed that the growth of Xoo was significantly inhibited by TKA, with a minimum inhibitory concentration of 54 μg/mL and that the three TKs in TKA all had remarkable anti-Xoo activity. Further inhibitory mechanism analyses revealed that TKA treatments resulted in the damage of Xoo cell morphology and the release of intracellular substances, such as proteins and nucleic acids, from Xoo cells, suggesting the damage of the permeability of Xoo cell membrane by TKA. Pathogenicity analyses showed that the lesion length on rice leaf was significantly reduced by 82.2% when treated with 27 μg/mL TKA. This study represents the first report of the antibacterial activity of peptaibols against a Gram-negative bacterium. Thus, TKA can be of a promising agent in controlling bacterial leaf blight on rice.
Tumor cellularity beyond the visible in soft tissue sarcomas: Results of an ADC-based, single center, and preliminary radiomics study
Authors: Giraudo Chiara , Fichera Giulia , Del Fiore Paolo , Mocellin Simone , Brunello Antonella , Rastrelli Marco , Stramare Roberto
Published: October 2022

Purpose

Soft tissue sarcomas represent approximately 1% of all malignancies, and diagnostic radiology plays a significant role in the overall management of this rare group of tumors. Recently, quantitative imaging and, in particular, radiomics demonstrated to provide significant novel information, for instance, in terms of prognosis and grading. The aim of this study was to evaluate the prognostic role of radiomic variables extracted from apparent diffusion coefficient (ADC) maps collected at diagnosis in patients with soft tissue sarcomas in terms of overall survival and metastatic spread as well as to assess the relationship between radiomics and the tumor grade.

Methods

Patients with histologically proven soft tissue sarcomas treated in our tertiary center from 2016 to 2019 who underwent an Magnetic Resonance (MR) scan at diagnosis including diffusion-weighted imaging were included in this retrospective institution review board–approved study. Each primary lesion was segmented using the b50 images; the volumetric region of interest was then applied on the ADC map. A total of 33 radiomic features were extracted, and highly correlating features were selected by factor analysis. In the case of feature/s showing statistically significant results, the diagnostic accuracy was computed. The Spearman correlation coefficient was used to evaluate the relationship between the tumor grade and radiomic features selected by factor analysis. All analyses were performed applying p<0.05 as a significant level.

Results

A total of 36 patients matched the inclusion criteria (15 women; mean age 58.9 ± 15 years old). The most frequent histotype was myxofibrosarcoma (16.6%), and most of the patients were affected by high-grade lesions (77.7%). Seven patients had pulmonary metastases, and, altogether, eight were deceased. Only the feature Imc1 turned out to be a predictor of metastatic spread (p=0.045 after Bonferroni correction) with 76.7% accuracy. The value -0.16 showed 73.3% sensitivity and 71.4% specificity, and patients with metastases showed lower values (mean Imc1 of metastatic patients -0.31). None of the examined variables was a predictor of the overall outcome (p>0.05, each). A moderate statistically significant correlation emerged only between Imc1 and the tumor grade (r=0.457, p=0.005).

Conclusions

In conclusion, the radiomic feature Imc1 acts as a predictor of metastatic spread in patients with soft tissue sarcomas and correlates with the tumor grade.
The value of plasma insulin-like growth factor 1 and interleukin-18 in the diagnosis of bronchopulmonary dysplasia in premature infants
Authors: Huang Lie , Guo Ning , Cheng Meile , Wang Jianhui , Chen Feifan , Shi Yuan
Published: October 2022

Objective

To explore the diagnostic value of IGF-1 and IL-18 in premature infants with BPD.

Methods

Through a prospective observational study, the serum samples of infants in the BPD group and the non-BPD group were collected at different targeted time points, and the serum IGF-1 and IL-18 concentrations were dynamically monitored by ELISA. The Student t-test and one-way analysis of variance were adopted to analyze data, and the receiver operating characteristic (ROC) curve was used to test the diagnostic value.

Result

A total of 90 VLBW premature infants admitted to NICU between January 2020 and 2021 were finally included. Compared with the non-BPD group, infants diagnosed with BPD had a significantly lower serum concentration of IGF-1 (P < 0.05) but a higher level of IL-18 (P < 0.05) on days 1, 7, 14, and 28 after birth. With the ROC curve analysis, the serum concentration IGF-1 on day 14 and IL-18 on day 28 reported high sensitivity and specificity to predict the risk of BPD (IGF-1: sensitivity: 89.29%, specificity: 77.78%, AUC: 0.8710; IL-18: sensitivity: 53.57%, specificity: 83.33%, AUC: 0.7887). And more substantial predictive power was found in combined analysis of IGF-1 and serum IL-18 on day 14: the sensitivity was 91.07% and the specificity was 83.33%, with the AUC of 0.9142.

Conclusion

IGF-1 and IL-18 might be closely involved in the occurrence and development of BPD. The serum concentration of IGF-1 combined with IL-18 could be potentially sensitive markers for the early diagnosis and severity of BPD.
Integrating network pharmacology and experimental verification to decipher the immunomodulatory effect of Bu-Zhong-Yi-Qi-Tang against poly (I:C)-induced pulmonary inflammation
Authors: Hu Liufang , Yamamoto Marina , Chen Jiali , Duan Huifang , Du Jing , He Liangliang , Shi Danfeng , Yao Xinsheng , Nagai Takayuki , Kiyohara Hiroaki , Yao Zhihong
Published: October 2022

Pulmonary inflammation caused by respiratory tract viral infections is usually associated with acute exacerbation of respiratory diseases, such as asthma and chronic obstructive pulmonary disease (COPD). Therefore, maintaining the pulmonary immune homeostasis is particular important for prevention of the acute exacerbation. Bu-Zhong-Yi-Qi-Tang (BZYQT), a traditional Chinese medicine formula, has been broadly used to improve respiratory and gastrointestinal disorders in China for over 700 years. Previously, we have found the regulatory activity of BZYQT on the lower respiratory immune system, while its potential effects during pulmonary inflammation remain unknown. Thus, the current study focused on deciphering its immunomodulatory effect and potential mechanism against pulmonary inflammation by using a viral RNA analogue, poly (I:C), induced murine pulmonary inflammation model and BEAS-2B cell model coupled with network pharmacology. Inflammatory cells in the bronchoalveolar lavage fluid were counted through microscope examination according to the cell’s morphology and staining characteristics; protein and gene levels of inflammatory mediators were determined with Elisa and quantitative PCR, respectively; network pharmacology was conducted based on 46 BZYQT-related potential bioactive components, pulmonary inflammation and immune-related targets. Our results indicated that the recruitment of neutrophils and the expression of Adgre1 (encoding the F4/80, which is a macrophage marker) in the lung induced by poly (I:C) were significantly reduced after BZYQT treatment, and these effects were further demonstrated to be related to the interference of leukocyte transendothelial migration from the decreased levels of CXCL10, IL-6, TNF-α, CXCL2, ICAM-1, VCAM-1, and E/P-selectins. Furthermore, BZYQT inhibited the CXCL10, TNF-α, and IFN-β expression of poly (I:C)-challenged BEAS-2B cells in a dose-dependent manner. Through integrating results from network pharmacology, experiments, and the published literature, isoliquiritigenin, Z-ligustilide, atractylenolide I, atractylenolide III, formononetin, ferulic acid, hesperidin, and cimigenoside were presumed as the bioactive components of BZYQT against pulmonary inflammation. Overall, our findings demonstrated that BZYQT possesses a pronounced immunomodulatory effect on poly (I:C)-induced pulmonary inflammation, which provides a pharmacological basis for BZYQT in the treatment of respiratory disorders.
The status of industrialization and development of exosomes as a drug delivery system: A review
Authors: Yin Yi , Han Xing , Li Cheng , Sun Tonghui , Li Kailin , Liu Xionghao , Liu Mujun
Published: October 2022

Exosomes, as natural biomolecular carriers produced by cells, have the potential and advantage of delivering drugs to target organs or cells in vivo. The steps to improve exosomes as a drug delivery system can be divided into three steps:large-scale preparation of exosomes, loading of drugs and targeted delivery of exosomes. Based on the existing production process and technology, there is still much room for improvement. This review highlights the research progress in three aspects and proposes new technologies and innovative approaches to improve the efficiency of exosome delivery.
Fundamentals of Magneto-Optical Spectroscopy
Authors: Sato Katsuaki , Ishibashi Takayuki
Published: October 2022

This paper provides a comprehensive review of magneto-optical (MO) spectroscopy. In the first place, different methods of MO measurements such as the Faraday effect, MO Kerr effect, and Cotton-Mouton effect are briefly introduced. Next, macroscopic and microscopic origin in magnetic materials is summarized. In the third part, measuring techniques for MO spectroscopies are reviewed, with a particular reference to the polarization modulation technique.
Clinal variation as a tool to understand climate change
Authors: Mayekar Harshad Vijay , Ramkumar Durga Kavya , Garg Divita , Nair Abhishek , Khandelwal Ashwin , Joshi Kavya , Rajpurohit Subhash
Published: October 2022

Clines are observable gradients that reflect continuous change in biological traits of species across geographical ranges. Clinal gradients could vary at geographic scales (latitude and altitude). Since clinal variations represent active genomic responses at the population level they (clines) provide an immense power to address questions related to climatic change. With the fast pace of climate change i.e. warming, populations are also likely to exhibit rapid responses; at both the phenotypic and genotypic levels. We seek to understand how clinal variation could be used to anticipate climatic responses using Drosophila, a pervasively used inter-disciplinary model system owing to its molecular repertoire. The genomic information coupled with the phenotypic variation greatly facilitates our understanding of the Drosophilidae response to climate change. We discuss traits associated with clinal variation at the phenotypic level as well as their underlying genetic regulators. Given prevailing climatic conditions and future projections for climate change, clines could emerge as monitoring tools to track the cross-talk between climatic variables and organisms.
Contrastive learning and subtyping of post-COVID-19 lung computed tomography images
Authors: Li Frank , Zhang Xuan , Comellas Alejandro P. , Hoffman Eric A. , Yang Tianbao , Lin Ching-Long
Published: October 2022

Patients who recovered from the novel coronavirus disease 2019 (COVID-19) may experience a range of long-term symptoms. Since the lung is the most common site of the infection, pulmonary sequelae may present persistently in COVID-19 survivors. To better understand the symptoms associated with impaired lung function in patients with post-COVID-19, we aimed to build a deep learning model which conducts two tasks: to differentiate post-COVID-19 from healthy subjects and to identify post-COVID-19 subtypes, based on the latent representations of lung computed tomography (CT) scans. CT scans of 140 post-COVID-19 subjects and 105 healthy controls were analyzed. A novel contrastive learning model was developed by introducing a lung volume transform to learn latent features of disease phenotypes from CT scans at inspiration and expiration of the same subjects. The model achieved 90% accuracy for the differentiation of the post-COVID-19 subjects from the healthy controls. Two clusters (C1 and C2) with distinct characteristics were identified among the post-COVID-19 subjects. C1 exhibited increased air-trapping caused by small airways disease (4.10%, p = 0.008) and diffusing capacity for carbon monoxide %predicted (DLCO %predicted, 101.95%, p < 0.001), while C2 had decreased lung volume (4.40L, p < 0.001) and increased ground glass opacity (GGO%, 15.85%, p < 0.001). The contrastive learning model is able to capture the latent features of two post-COVID-19 subtypes characterized by air-trapping due to small airways disease and airway-associated interstitial fibrotic-like patterns, respectively. The discovery of post-COVID-19 subtypes suggests the need for different managements and treatments of long-term sequelae of patients with post-COVID-19.
Triploid cultivars of Cymbidium act as a bridge in the formation of polyploid plants
Authors: Li Man-Man , Su Qing-Lian , Zu Jun-Rui , Xie Li , Wei Qian , Guo He-Rong , Chen Jianjun , Zeng Rui-Zhen , Zhang Zhi-Sheng
Published: October 2022

Triploid is considered a reproductive barrier and also a bridge in the formation of polyploids. However, few reports are available in Cymbidium. In this study, diploid ‘Xiaofeng’, sexual triploid ‘Yuchan’ and ‘Huanghe’ of Cymbidium were used to evaluate hybridization compatibility of the triploids. Results showed that the sexual triploids were fertile whether they were used as male or female parents. ‘Yuchan’ produced male gametes of 1x, 1x~2x, 2x, 2x~3x, and 3x at frequencies of 8.89%, 77.78%, 6.67%, 3.33%, and 3.33%, respectively; while ‘Huanghe’ produced 3.33% 1x, 80.00% 1x~2x, 8.89% 2x, 5.56% 2x~3x, and 2.22% 3x male gametes. The cross of ‘Xiaofeng’ with ‘Yuchan’ produced progenies with a wide range of ploidy levels, including one diploid, 34 2×~3× aneuploids, 12 triploids, and one tetraploid, indicating that male gametes produced by sexual triploid were fertile and could be transmitted and fused with egg cells. On the other hand, 10 progenies obtained from the cross of ‘Yuchan’ × ‘Xiaofeng’ were all aneuploids. The cross of ‘Yuchan’ with ‘Huanghe’ produced 40 progenies including three 2×~3× aneuploids, nine 3×~4× aneuploids, 21 tetraploids, six 4×~5× aneuploids, and one pentaploid, suggesting that 2x gametes, instead of the unreduced ones played a more important role in the formation of tetraploids. The survival rates of the hybrids were all above 80.00%, with the tetraploids at 96.67%. Cytological analysis revealed that during meiosis of sexual polyploids, two chromosome sets of the 2n gamete were inclined to enter into the same daughter cell, resulting in the production of 2x gametes. Our results indicate that the triploid cymbidiums are not reproductive barrier but serve as a bridge in the formation of polyploid plants.
Slower Peak Pupillary Response to Emotional Faces in Parents of Autistic Individuals
Authors: Hogan Abigail L. , Winston Molly , Barstein Jamie , Losh Molly
Published: October 2022

Background

Atypical autonomic arousal has been consistently documented in autism spectrum disorder (ASD) and is thought to contribute to the social-communication phenotype of ASD. Some evidence suggests that clinically unaffected first-degree relatives of autistic individuals may also show subtle differences in indices of autonomic arousal, potentially implicating heritable pathophysiological mechanisms in ASD. This study examined pupillary responses in parents of autistic individuals to investigate evidence that atypical autonomic arousal might constitute a subclinical physiological marker of ASD heritability within families of autistic individuals.

Methods

Pupillary responses to emotional faces were measured in 47 ASD parents and 20 age-matched parent controls. Macro-level pupillary responses (e.g., mean, peak, latency to peak) and dynamic pupillary responses over the course of the stimulus presentation were compared between groups, and in relationship to subclinical ASD-related features in ASD parents. A small ASD group (n = 20) and controls (n = 17) were also included for exploratory analyses of parent–child correlations in pupillary response.

Results

Parents of autistic individuals differed in the time course of pupillary response, exhibiting a later primary peak response than controls. In ASD parents, slower peak response was associated with poorer pragmatic language and larger peak response was associated with poorer social cognition. Exploratory analyses revealed correlations between peak pupillary responses in ASD parents and mean and peak pupillary responses in their autistic children.

Conclusion

Differences in pupillary responses in clinically unaffected parents, together with significant correlations with ASD-related features and significant parent–child associations, suggest that pupillary responses to emotional faces may constitute an objective physiological marker of ASD genetic liability, with potential to inform the mechanistic underpinnings of ASD symptomatology.