bluuebunny/crossref_metadata_2025 huggingface dataset:
Supplementary Data from Biophysicochemical Motifs in T-cell Receptor Sequences Distinguish Repertoires from Tumor-Infiltrating Lymphocyte and Adjacent Healthy Tissue
Authors: Ostmeyer Jared , Christley Scott , Toby Inimary T. , Cowell Lindsay G.
Published: March 2023

supplementary tables 1 - 4 and 6 and figure legends
Colorectal Cancer Model Weights from Biophysicochemical Motifs in T-cell Receptor Sequences Distinguish Repertoires from Tumor-Infiltrating Lymphocyte and Adjacent Healthy Tissue
Authors: Ostmeyer Jared , Christley Scott , Toby Inimary T. , Cowell Lindsay G.
Published: March 2023

Supplementary Table 5: Model weights of all 15 colorectal cancer models.
Supplementary Data from Microenvironmental Activation of Nrf2 Restricts the Progression of Nrf2-Activated Malignant Tumors
Authors: Hayashi Makiko , Kuga Ayumi , Suzuki Mikiko , Panda Harit , Kitamura Hiroshi , Motohashi Hozumi , Yamamoto Masayuki
Published: March 2023

Figure S1: Expression of Keap1 and Nqo1 in Keap1WT/WT, Keap1FB/FB and Keap1FA/FA mouse tissues; Figure S2: Analyses of tumor-bearing mouse cohorts; Figure S3: Origins of tumor cells in Kras::Keap1WT/WT, Kras::Keap1FB/FB and Kras::Keap1FA/FA lungs; Figure S4. Analyses of tumor-bearing Kras::Keap1FA/FA mouse cohorts that received Keap1FA/FA, Keap1WT/WT or Nrf2-/- bone marrows; Table S1: Primers and probes for qRT-PCR analyses; Table S2: Primers for analyses of recombination efficiency; Supplementary Materials and Methods (Establishment of mouse embryonic fibroblasts (MEFs), Validation of the recombination efficiency, Immunoblot analyses, Histology and Immunohistochemistry, Flow cytometry, and isolation of CD8+ T cells in tumor-bearing lungs)
Supplementary Methods from Activation of Canonical BMP4-SMAD7 Signaling Suppresses Breast Cancer Metastasis
Authors: Eckhardt Bedrich L. , Cao Yuan , Redfern Andrew D. , Chi Lap Hing , Burrows Allan D. , Roslan Suraya , Sloan Erica K. , Parker Belinda S. , Loi Sherene , Ueno Naoto T. , Lau Peter K. H. , Latham Bruce , Anderson Robin L.
Published: March 2023

Supplementary methods
Supplementary Material S4 from A Tumor-in-Host DEB-Based Approach for Modeling Cachexia and Bevacizumab Resistance
Authors: Tosca Elena M. , Rocchetti Maurizio , Pesenti Enrico , Magni Paolo
Published: March 2023

Figures of typical and individual model fittings, VPC, goodness-of-fit for all the experiments (a-g); simultaneous fitting of experiments b,d,e; table of model parameter estimates; plot of hypoxia-mediated resistance model predictions and model parameter estimates
Supplementary Video 5 from Pattern of Invasion in Human Pancreatic Cancer Organoids Is Associated with Loss of SMAD4 and Clinical Outcome
Authors: Huang Wenjie , Navarro-Serer Bernat , Jeong Yea Ji , Chianchiano Peter , Xia Limin , Luchini Claudio , Veronese Nicola , Dowiak Cameron , Ng Tammy , Trujillo Maria A. , Huang Bo , Pflüger Michael J. , Macgregor-Das Anne M. , Lionheart Gemma , Jones Danielle , Fujikura Kohei , Nguyen-Ngoc Kim-Vy , Neumann Neil M. , Groot Vincent P. , Hasanain Alina , van Oosten A. Floortje , Fischer Sandra E. , Gallinger Steven , Singhi Aatur D. , Zureikat Amer H. , Brand Randall E. , Gaida Matthias M. , Heinrich Stefan , Burkhart Richard A. , He Jin , Wolfgang Christopher L. , Goggins Michael G. , Thompson Elizabeth D. , Roberts Nicholas J. , Ewald Andrew J. , Wood Laura D.
Published: March 2023

Supplementary Video 5. Time-lapse analysis of SMAD4-mutant PDAC organoids: Dox-TGFβ-.
Supplementary Movie 1 from Extracellular Vesicles from Cancer-Associated Fibroblasts Containing Annexin A6 Induces FAK-YAP Activation by Stabilizing β1 Integrin, Enhancing Drug Resistance
Authors: Uchihara Tomoyuki , Miyake Keisuke , Yonemura Atsuko , Komohara Yoshihiro , Itoyama Rumi , Koiwa Mayu , Yasuda Tadahito , Arima Kota , Harada Kazuto , Eto Kojiro , Hayashi Hiromitsu , Iwatsuki Masaaki , Iwagami Shiro , Baba Yoshifumi , Yoshida Naoya , Yashiro Masakazu , Masuda Mari , Ajani Jaffer A. , Tan Patrick , Baba Hideo , Ishimoto Takatsugu
Published: March 2023

Real-time imaging of AGS cells treated with normal medium in the ECM.
Supplementary Data from Extracellular Vesicles from Cancer-Associated Fibroblasts Containing Annexin A6 Induces FAK-YAP Activation by Stabilizing β1 Integrin, Enhancing Drug Resistance
Authors: Uchihara Tomoyuki , Miyake Keisuke , Yonemura Atsuko , Komohara Yoshihiro , Itoyama Rumi , Koiwa Mayu , Yasuda Tadahito , Arima Kota , Harada Kazuto , Eto Kojiro , Hayashi Hiromitsu , Iwatsuki Masaaki , Iwagami Shiro , Baba Yoshifumi , Yoshida Naoya , Yashiro Masakazu , Masuda Mari , Ajani Jaffer A. , Tan Patrick , Baba Hideo , Ishimoto Takatsugu
Published: March 2023

Supplementary Figure 1: GC cells do not exhibit network formation or subsequent drug resistance after treatment with GC-CM in the ECM. Supplementary Figure 2: CAF-CM enhances the tubular network formation and anti-apoptotic signaling of GC cells. Supplementary Figure 3. Protocol for RNA sequencing and gene expression determination. Supplementary Figure 4. Identification of CAF-derived EVs. Supplementary Figure 5. Annexin A6 in CAF-EVs is correlated with tubular network formation. Supplementary Figure 6. CAF-EVs enhance the expression of integrins in GC cells. Supplementary Figure 7. Loss-of-function study using ITGB1 siRNA in CAFs and a GC cell line (AGS). Supplementary Figure 8. Loss-of-function study using ANXA6 siRNA in CAFs. Supplementary Figure 9. Increases in the YAP levels are correlated with increases in its nuclear localization. Supplementary Figure 10. Protocol used for evaluation of the chemoresistance of intraperitoneal mice after treatment with siCTRL- or siANXA6-transfected CAF-EVs.
Supplementary Video 1 from Pattern of Invasion in Human Pancreatic Cancer Organoids Is Associated with Loss of SMAD4 and Clinical Outcome
Authors: Huang Wenjie , Navarro-Serer Bernat , Jeong Yea Ji , Chianchiano Peter , Xia Limin , Luchini Claudio , Veronese Nicola , Dowiak Cameron , Ng Tammy , Trujillo Maria A. , Huang Bo , Pflüger Michael J. , Macgregor-Das Anne M. , Lionheart Gemma , Jones Danielle , Fujikura Kohei , Nguyen-Ngoc Kim-Vy , Neumann Neil M. , Groot Vincent P. , Hasanain Alina , van Oosten A. Floortje , Fischer Sandra E. , Gallinger Steven , Singhi Aatur D. , Zureikat Amer H. , Brand Randall E. , Gaida Matthias M. , Heinrich Stefan , Burkhart Richard A. , He Jin , Wolfgang Christopher L. , Goggins Michael G. , Thompson Elizabeth D. , Roberts Nicholas J. , Ewald Andrew J. , Wood Laura D.
Published: March 2023

Supplementary Video 1. Mesenchymal invasion in PDAC organoid cultured in collagen I (extensive invasion).
Table S2 from SIRT1-Mediated Expression of CD24 and Epigenetic Suppression of Novel Tumor Suppressor miR-1185-1 Increases Colorectal Cancer Stemness
Authors: Wang Teh-Wei , Chern Edward , Hsu Chao-Wei , Tseng Kuo-Chang , Chao Hsiao-Mei
Published: March 2023

Predict CD24-targeting miRs
Figures S4 from SIRT1-Mediated Expression of CD24 and Epigenetic Suppression of Novel Tumor Suppressor miR-1185-1 Increases Colorectal Cancer Stemness
Authors: Wang Teh-Wei , Chern Edward , Hsu Chao-Wei , Tseng Kuo-Chang , Chao Hsiao-Mei
Published: March 2023

The expression of CD24 in xenograft tissue and information of clinical samples
Supplementary Table 1 from Pattern of Invasion in Human Pancreatic Cancer Organoids Is Associated with Loss of SMAD4 and Clinical Outcome
Authors: Huang Wenjie , Navarro-Serer Bernat , Jeong Yea Ji , Chianchiano Peter , Xia Limin , Luchini Claudio , Veronese Nicola , Dowiak Cameron , Ng Tammy , Trujillo Maria A. , Huang Bo , Pflüger Michael J. , Macgregor-Das Anne M. , Lionheart Gemma , Jones Danielle , Fujikura Kohei , Nguyen-Ngoc Kim-Vy , Neumann Neil M. , Groot Vincent P. , Hasanain Alina , van Oosten A. Floortje , Fischer Sandra E. , Gallinger Steven , Singhi Aatur D. , Zureikat Amer H. , Brand Randall E. , Gaida Matthias M. , Heinrich Stefan , Burkhart Richard A. , He Jin , Wolfgang Christopher L. , Goggins Michael G. , Thompson Elizabeth D. , Roberts Nicholas J. , Ewald Andrew J. , Wood Laura D.
Published: March 2023

Clinical and Pathological Features of Resected PDACs Analyzed in Organoid Culture
Supplementary Methods from Pattern of Invasion in Human Pancreatic Cancer Organoids Is Associated with Loss of SMAD4 and Clinical Outcome
Authors: Huang Wenjie , Navarro-Serer Bernat , Jeong Yea Ji , Chianchiano Peter , Xia Limin , Luchini Claudio , Veronese Nicola , Dowiak Cameron , Ng Tammy , Trujillo Maria A. , Huang Bo , Pflüger Michael J. , Macgregor-Das Anne M. , Lionheart Gemma , Jones Danielle , Fujikura Kohei , Nguyen-Ngoc Kim-Vy , Neumann Neil M. , Groot Vincent P. , Hasanain Alina , van Oosten A. Floortje , Fischer Sandra E. , Gallinger Steven , Singhi Aatur D. , Zureikat Amer H. , Brand Randall E. , Gaida Matthias M. , Heinrich Stefan , Burkhart Richard A. , He Jin , Wolfgang Christopher L. , Goggins Michael G. , Thompson Elizabeth D. , Roberts Nicholas J. , Ewald Andrew J. , Wood Laura D.
Published: March 2023

Supplementary Methods
Figure S2 from SIRT1-Mediated Expression of CD24 and Epigenetic Suppression of Novel Tumor Suppressor miR-1185-1 Increases Colorectal Cancer Stemness
Authors: Wang Teh-Wei , Chern Edward , Hsu Chao-Wei , Tseng Kuo-Chang , Chao Hsiao-Mei
Published: March 2023

The expression level of CD24 in CD24-KD, SIRT1-OE, SIRT-KD and miROE CRC cells.
Supplementary Figure 2 from Pattern of Invasion in Human Pancreatic Cancer Organoids Is Associated with Loss of SMAD4 and Clinical Outcome
Authors: Huang Wenjie , Navarro-Serer Bernat , Jeong Yea Ji , Chianchiano Peter , Xia Limin , Luchini Claudio , Veronese Nicola , Dowiak Cameron , Ng Tammy , Trujillo Maria A. , Huang Bo , Pflüger Michael J. , Macgregor-Das Anne M. , Lionheart Gemma , Jones Danielle , Fujikura Kohei , Nguyen-Ngoc Kim-Vy , Neumann Neil M. , Groot Vincent P. , Hasanain Alina , van Oosten A. Floortje , Fischer Sandra E. , Gallinger Steven , Singhi Aatur D. , Zureikat Amer H. , Brand Randall E. , Gaida Matthias M. , Heinrich Stefan , Burkhart Richard A. , He Jin , Wolfgang Christopher L. , Goggins Michael G. , Thompson Elizabeth D. , Roberts Nicholas J. , Ewald Andrew J. , Wood Laura D.
Published: March 2023

SOX9 expression in normal ductal organoids
Table S6 from Topological Tumor Graphs: A Graph-Based Spatial Model to Infer Stromal Recruitment for Immunosuppression in Melanoma Histology
Authors: Failmezger Henrik , Muralidhar Sathya , Rullan Antonio , de Andrea Carlos E. , Sahai Erik , Yuan Yinyin
Published: March 2023

Pathways enriched for genes upregulated in tumours with high stromal barrier
Supplementary Data Fig. S5 from Lymphoma Angiogenesis Is Orchestrated by Noncanonical Signaling Pathways
Authors: Gloger Marleen , Menzel Lutz , Grau Michael , Vion Anne-Clemence , Anagnostopoulos Ioannis , Zapukhlyak Myroslav , Gerlach Kerstin , Kammertöns Thomas , Hehlgans Thomas , Zschummel Maria , Lenz Georg , Gerhardt Holger , Höpken Uta E. , Rehm Armin
Published: March 2023

Vascular permeability and leukocyte transmigration
Supplementary Data Fig. S4 from Lymphoma Angiogenesis Is Orchestrated by Noncanonical Signaling Pathways
Authors: Gloger Marleen , Menzel Lutz , Grau Michael , Vion Anne-Clemence , Anagnostopoulos Ioannis , Zapukhlyak Myroslav , Gerlach Kerstin , Kammertöns Thomas , Hehlgans Thomas , Zschummel Maria , Lenz Georg , Gerhardt Holger , Höpken Uta E. , Rehm Armin
Published: March 2023

Lack of hypoxia and tip cell signature
Supplementary Table S2 from Clonal ZEB1-Driven Mesenchymal Transition Promotes Targetable Oncologic Antiangiogenic Therapy Resistance
Authors: Chandra Ankush , Jahangiri Arman , Chen William , Nguyen Alan T. , Yagnik Garima , Pereira Matheus P. , Jain Saket , Garcia Joseph H. , Shah Sumedh S. , Wadhwa Harsh , Joshi Rushikesh S. , Weiss Jacob , Wolf Kayla J. , Lin Jung-Ming G. , Müller Sören , Rick Jonathan W. , Diaz Aaron A. , Gilbert Luke A. , Kumar Sanjay , Aghi Manish K.
Published: March 2023

Supplementary Table S2 has primer sequences used to analyze expression of genes known to be expressed by GBM stem cells.
Supplementary Figures S1, S2, S3, S4, S5 from Targeting p63 Upregulation Abrogates Resistance to MAPK Inhibitors in Melanoma
Authors: Patel Ankit , Garcia Lucia Fraile , Mannella Viviana , Gammon Luke , Borg Tiffanie-Marie , Maffucci Tania , Scatolini Maria , Chiorino Giovanna , Vergani Elisabetta , Rodolfo Monica , Maurichi Andrea , Posch Christian , Matin Rubeta N. , Harwood Catherine A. , Bergamaschi Daniele
Published: March 2023

Supplemental Information includes 5 Supplementary figures and legends: Figure S1: Correlation of p63 expression and BRAF/NRAS mutational status in melanoma and characterization of MAPKi resistant melanoma cell lines. Figure S2: p63 upregulation in MAPKi resistant melanoma. Figure S3: ITCH and FBXW7 expression in MAPKi resistant melanoma cells. Figure S4: Expression and location of MDM2 and MDM4 in melanoma. Figure S5: Effect of Nutlin-3A treatment on p63, FBXW7, ITCH expression and apoptosis.
Supplementary Figure S2 from A Proof of Concept for Biomarker-Guided Targeted Therapy against Ovarian Cancer Based on Patient-Derived Tumor Xenografts
Authors: Palmer Adam C. , Plana Deborah , Gao Hui , Korn Joshua M. , Yang Guizhi , Green John , Zhang Xiamei , Velazquez Roberto , McLaughlin Margaret E. , Ruddy David A. , Kowal Colleen , Muszynski Julie , Bullock Caroline , Rivera Stacy , Rakiec Daniel P. , Elliott GiNell , Fordjour Paul , Meyer Ronald , Loo Alice , Kurth Esther , Engelman Jeffrey A. , Bitter Hans , Sellers William R. , Williams Juliet A. , Sorger Peter K.
Published: March 2023

Genomic landscape analysis of epithelial ovarian carcinoma of PDXs, patient tumors (TCGA) and cell lines (CCLE).
Supplementary Data from Organoids Reveal That Inherent Radiosensitivity of Small and Large Intestinal Stem Cells Determines Organ Sensitivity
Authors: Martin Maria Laura , Adileh Mohammad , Hsu Kuo-Shun , Hua Guoqiang , Lee Sang Gyu , Li Christy , Fuller John D. , Rotolo Jimmy A. , Bodo Sahra , Klingler Stefan , Haimovitz-Friedman Adriana , Deasy Joseph O. , Fuks Zvi , Paty Philip B. , Kolesnick Richard N.
Published: March 2023

Supplementary Materials. Table S1. List of all reagents used in this study; Figure S1. LI organoids regrow after radiation; Figure S2. Sorting strategy for intestinal stem cells from the small and large intestines; Figure S3. Flow cytometry analysis of GFP+ cells in organoids versus colonies; Figure S4. Day 1 post-plating colonic stem cell colonies display defective DNA repair.
Supplementary Data from Molecular Profiles of Matched Primary and Metastatic Tumor Samples Support a Linear Evolutionary Model of Breast Cancer
Authors: Chen Runpu , Goodison Steve , Sun Yijun
Published: March 2023

Supplementary data: Detailed descriptions of bioinformatics methods used in the study
Supplementary Table S2 from Undermining Glutaminolysis Bolsters Chemotherapy While NRF2 Promotes Chemoresistance in KRAS-Driven Pancreatic Cancers
Authors: Mukhopadhyay Suman , Goswami Debanjan , Adiseshaiah Pavan P. , Burgan William , Yi Ming , Guerin Theresa M. , Kozlov Serguei V. , Nissley Dwight V. , McCormick Frank
Published: March 2023

Gemcitabine IC50 Values
Table S1 from Aquaporin-7 Regulates the Response to Cellular Stress in Breast Cancer
Authors: Dai Chen , Charlestin Verodia , Wang Man , Walker Zachary T. , Miranda-Vergara Maria Cristina , Facchine Beth A. , Wu Junmin , Kaliney William J. , Dovichi Norman J. , Li Jun , Littlepage Laurie E.
Published: March 2023

List of hubs and raw data for network analysis.
Supplementary Table S1 from Undermining Glutaminolysis Bolsters Chemotherapy While NRF2 Promotes Chemoresistance in KRAS-Driven Pancreatic Cancers
Authors: Mukhopadhyay Suman , Goswami Debanjan , Adiseshaiah Pavan P. , Burgan William , Yi Ming , Guerin Theresa M. , Kozlov Serguei V. , Nissley Dwight V. , McCormick Frank
Published: March 2023

Clinical characteristics of NRF2 expression in pancreatic cancer patients
Figure S1 from Aquaporin-7 Regulates the Response to Cellular Stress in Breast Cancer
Authors: Dai Chen , Charlestin Verodia , Wang Man , Walker Zachary T. , Miranda-Vergara Maria Cristina , Facchine Beth A. , Wu Junmin , Kaliney William J. , Dovichi Norman J. , Li Jun , Littlepage Laurie E.
Published: March 2023

Aquaporin-7 deficiency regulates breast cancer phenotypes.
Supplementary Data from Undermining Glutaminolysis Bolsters Chemotherapy While NRF2 Promotes Chemoresistance in KRAS-Driven Pancreatic Cancers
Authors: Mukhopadhyay Suman , Goswami Debanjan , Adiseshaiah Pavan P. , Burgan William , Yi Ming , Guerin Theresa M. , Kozlov Serguei V. , Nissley Dwight V. , McCormick Frank
Published: March 2023

Supplementary Methods
Supplementary Figure S1 from Across-Site Differences in the Mechanism of Alcohol-Induced Digestive Tract Carcinogenesis: An Evaluation by Mediation Analysis
Authors: Koyanagi Yuriko N. , Suzuki Etsuji , Imoto Issei , Kasugai Yumiko , Oze Isao , Ugai Tomotaka , Iwase Madoka , Usui Yoshiaki , Kawakatsu Yukino , Sawabe Michi , Hirayama Yutaka , Tanaka Tsutomu , Abe Tetsuya , Ito Seiji , Komori Koji , Hanai Nobuhiro , Tajika Masahiro , Shimizu Yasuhiro , Niwa Yasumasa , Ito Hidemi , Matsuo Keitaro
Published: March 2023

Supplementary Figure S1 presents the distribution (%) of first-visit hospital units among controls in each study.
Supplemental Movie 9 from YAP Enhances Tumor Cell Dissemination by Promoting Intravascular Motility and Reentry into Systemic Circulation
Authors: Benjamin David C. , Kang Joon Ho , Hamza Bashar , King Emily M. , Lamar John M. , Manalis Scott R. , Hynes Richard O.
Published: March 2023

Movie of A375 cells over-expressing YAP-AA in the inter-segmental vessels (ISVs) over the course of ~3 hours.
Figure S2 from Decreased Mitochondrial DNA Content Drives OXPHOS Dysregulation in Chromophobe Renal Cell Carcinoma
Authors: Xiao Yi , Clima Rosanna , Busch Jonas , Rabien Anja , Kilic Ergin , Villegas Sonia L. , Timmermann Bernd , Attimonelli Marcella , Jung Klaus , Meierhofer David
Published: March 2023

Plasma and urine GSH levels cannot be used as a marker to distinguish RCC patients from healthy control subjects
Supplemental Movie 4 from YAP Enhances Tumor Cell Dissemination by Promoting Intravascular Motility and Reentry into Systemic Circulation
Authors: Benjamin David C. , Kang Joon Ho , Hamza Bashar , King Emily M. , Lamar John M. , Manalis Scott R. , Hynes Richard O.
Published: March 2023

Movie over 12 hours of a whole zebrafish embryo injected with EV control A375 cells
Supplementary Data from Senescent Stromal Cells Promote Cancer Resistance through SIRT1 Loss-Potentiated Overproduction of Small Extracellular Vesicles
Authors: Han Liu , Long Qilai , Li Shenjun , Xu Qixia , Zhang Boyi , Dou Xuefeng , Qian Min , Jiramongkol Yannasittha , Guo Jianming , Cao Liu , Chin Y. Eugene , Lam Eric W.-F. , Jiang Jing , Sun Yu
Published: March 2023

Clinical, pathological, cell biology and bioinformatics-based experimental protocols.
Supplementary Data from Senescent Stromal Cells Promote Cancer Resistance through SIRT1 Loss-Potentiated Overproduction of Small Extracellular Vesicles
Authors: Han Liu , Long Qilai , Li Shenjun , Xu Qixia , Zhang Boyi , Dou Xuefeng , Qian Min , Jiramongkol Yannasittha , Guo Jianming , Cao Liu , Chin Y. Eugene , Lam Eric W.-F. , Jiang Jing , Sun Yu
Published: March 2023

Antibody information summary.
Table S2 from Erbin Suppresses KSR1-Mediated RAS/RAF Signaling and Tumorigenesis in Colorectal Cancer
Authors: Stevens Payton D. , Wen Yang-An , Xiong Xiaopeng , Zaytseva Yekaterina Y. , Li Austin T. , Wang Chi , Stevens Ashley T. , Farmer Trevor N. , Gan Tong , Weiss Heidi L. , Inagaki Masaki , Marchetto Sylvie , Borg Jean-Paul , Gao Tianyan
Published: March 2023

Table S2. Top 25 gene sets that are positively or negatively correlated with Erbin gene expression in CRC.
Figure S3 from YAP and AP-1 Cooperate to Initiate Pancreatic Cancer Development from Ductal Cells in Mice
Authors: Park Jaeoh , Eisenbarth David , Choi Wonyoung , Kim Hail , Choi Chan , Lee Dahye , Lim Dae-Sik
Published: March 2023

Supplementary Figure S3
Supplementary Table 3 from BRG1 Loss Predisposes Lung Cancers to Replicative Stress and ATR Dependency
Authors: Gupta Manav , Concepcion Carla P. , Fahey Caroline G. , Keshishian Hasmik , Bhutkar Arjun , Brainson Christine F. , Sanchez-Rivera Francisco J. , Pessina Patrizia , Kim Jonathan Y. , Simoneau Antoine , Paschini Margherita , Beytagh Mary C. , Stanclift Caroline R. , Schenone Monica , Mani D.R. , Li Chendi , Oh Audris , Li Fei , Hu Hai , Karatza Angeliki , Bronson Roderick T. , Shaw Alice T. , Hata Aaron N. , Wong Kwok-Kin , Zou Lee , Carr Steven A. , Jacks Tyler , Kim Carla F.
Published: March 2023

Replication stress response gene signature used for survival analysis in lung adenocarcinoma and lung squamous cell carcinoma.
Supplementary Table 1 from BRG1 Loss Predisposes Lung Cancers to Replicative Stress and ATR Dependency
Authors: Gupta Manav , Concepcion Carla P. , Fahey Caroline G. , Keshishian Hasmik , Bhutkar Arjun , Brainson Christine F. , Sanchez-Rivera Francisco J. , Pessina Patrizia , Kim Jonathan Y. , Simoneau Antoine , Paschini Margherita , Beytagh Mary C. , Stanclift Caroline R. , Schenone Monica , Mani D.R. , Li Chendi , Oh Audris , Li Fei , Hu Hai , Karatza Angeliki , Bronson Roderick T. , Shaw Alice T. , Hata Aaron N. , Wong Kwok-Kin , Zou Lee , Carr Steven A. , Jacks Tyler , Kim Carla F.
Published: March 2023

Differential RNA-seq analysis and list of all gene ontology and cancer reactome pathways found for top differentially upregulated genes in BRG1 mutant lung cancer patients compared to BRG1 wildtype patients, in the TCGA, PanCancer databases.
Figure S6 from BRG1 Loss Predisposes Lung Cancers to Replicative Stress and ATR Dependency
Authors: Gupta Manav , Concepcion Carla P. , Fahey Caroline G. , Keshishian Hasmik , Bhutkar Arjun , Brainson Christine F. , Sanchez-Rivera Francisco J. , Pessina Patrizia , Kim Jonathan Y. , Simoneau Antoine , Paschini Margherita , Beytagh Mary C. , Stanclift Caroline R. , Schenone Monica , Mani D.R. , Li Chendi , Oh Audris , Li Fei , Hu Hai , Karatza Angeliki , Bronson Roderick T. , Shaw Alice T. , Hata Aaron N. , Wong Kwok-Kin , Zou Lee , Carr Steven A. , Jacks Tyler , Kim Carla F.
Published: March 2023

Figure S6 provides insight into gene expression analysis of other cancers where BRG1 is frequently mutated.
Supplementary Data from ANXA1 Binds and Stabilizes EphA2 to Promote Nasopharyngeal Carcinoma Growth and Metastasis
Authors: Feng Juan , Lu Shan-Shan , Xiao Ta , Huang Wei , Yi Hong , Zhu Wei , Fan Songqing , Feng Xue-Ping , Li Jiao-Yang , Yu Zheng-Zheng , Gao Song , Nie Guo-Hui , Tang Yao-Yun , Xiao Zhi-Qiang
Published: March 2023

1.Supplementary Materials and Methods; Supplementary Table S1-4; Supplementary Figure S1-8. Table S1. The clinicopathological characteristics of 184 patients with NPC. Table S2. The primers used for the amplification of the three genes by qRT-PCR. Table S3. Correlations between the two protein expression and clinicopathological characteristics in NPC. Table S4. Univariate and cox multivariate analyses of prognostic factors for overall and disease-free survival. Figure S1. Identification of ANXA1 and Cbl as interactors of EphA2 by co-IP-mass spectrometry (MS) analysis. Figure S2. ANXA1 affects EphA2 protein but not mRNA levels in the NPC cells. Figure S3. The effect of ANXA1 deletion mutant (D28-30) on EphA2 stability. Figure S4. Models for EphA2-Cbl and EphA2-ANXA1 complexes. Figure S5. Immunoblotting showing the levels of EphA2 and ANXA1 in the endogenous ANXA1 and EphA2 knockdown (shEphA2-ANXA1) 5-8F NPC cells transfected with the indicated plasmids. Figure S6. Binding of ANXA1 to EphA2 promotes EphA2 oncogenic signaling. Figure S7. A11 suppressed the tube formation of HUVECs. Figure S8. The effect of A11 peptide on the activity of pS897-EphA2/AKT signaling pathway in the NPC cells.
Figure S5 from BRG1 Loss Predisposes Lung Cancers to Replicative Stress and ATR Dependency
Authors: Gupta Manav , Concepcion Carla P. , Fahey Caroline G. , Keshishian Hasmik , Bhutkar Arjun , Brainson Christine F. , Sanchez-Rivera Francisco J. , Pessina Patrizia , Kim Jonathan Y. , Simoneau Antoine , Paschini Margherita , Beytagh Mary C. , Stanclift Caroline R. , Schenone Monica , Mani D.R. , Li Chendi , Oh Audris , Li Fei , Hu Hai , Karatza Angeliki , Bronson Roderick T. , Shaw Alice T. , Hata Aaron N. , Wong Kwok-Kin , Zou Lee , Carr Steven A. , Jacks Tyler , Kim Carla F.
Published: March 2023

Figure S5 provides details about drug screens in H2009 cells, along with further in vitro and in vivo characterization of ATR inhibition responses in lung cancers with BRG1 mutations or loss.
Figure S4 from BRG1 Loss Predisposes Lung Cancers to Replicative Stress and ATR Dependency
Authors: Gupta Manav , Concepcion Carla P. , Fahey Caroline G. , Keshishian Hasmik , Bhutkar Arjun , Brainson Christine F. , Sanchez-Rivera Francisco J. , Pessina Patrizia , Kim Jonathan Y. , Simoneau Antoine , Paschini Margherita , Beytagh Mary C. , Stanclift Caroline R. , Schenone Monica , Mani D.R. , Li Chendi , Oh Audris , Li Fei , Hu Hai , Karatza Angeliki , Bronson Roderick T. , Shaw Alice T. , Hata Aaron N. , Wong Kwok-Kin , Zou Lee , Carr Steven A. , Jacks Tyler , Kim Carla F.
Published: March 2023

Figure S4 provides further mass spectrometry analysis and co-immunoprecipitation experiments for BRG1 in several human isogenic models of BRG1 loss.
Figure S3 from BRG1 Loss Predisposes Lung Cancers to Replicative Stress and ATR Dependency
Authors: Gupta Manav , Concepcion Carla P. , Fahey Caroline G. , Keshishian Hasmik , Bhutkar Arjun , Brainson Christine F. , Sanchez-Rivera Francisco J. , Pessina Patrizia , Kim Jonathan Y. , Simoneau Antoine , Paschini Margherita , Beytagh Mary C. , Stanclift Caroline R. , Schenone Monica , Mani D.R. , Li Chendi , Oh Audris , Li Fei , Hu Hai , Karatza Angeliki , Bronson Roderick T. , Shaw Alice T. , Hata Aaron N. , Wong Kwok-Kin , Zou Lee , Carr Steven A. , Jacks Tyler , Kim Carla F.
Published: March 2023

Figure S3 provides further detail about DNA fibers analysis and increased CDC6 and pre-replication signatures in BRG1-mutant lung cancers.
Supplementary Methods from Tumor Cell–Derived IL1β Promotes Desmoplasia and Immune Suppression in Pancreatic Cancer
Authors: Das Shipra , Shapiro Beny , Vucic Emily A. , Vogt Sandra , Bar-Sagi Dafna
Published: March 2023

Supplementary Methods
Supplementary Methods from Identification of a Small-Molecule Inhibitor That Disrupts the SIX1/EYA2 Complex, EMT, and Metastasis
Authors: Zhou Hengbo , Blevins Melanie A. , Hsu Jessica Y. , Kong Deguang , Galbraith Matthew D. , Goodspeed Andrew , Culp-Hill Rachel , Oliphant Michael U.J. , Ramirez Dominique , Zhang Lingdi , Trinidad-Pineiro Jennyvette , Mathews Griner Lesley , King Rebecca , Barnaeva Elena , Hu Xin , Southall Noel T. , Ferrer Marc , Gustafson Daniel L. , Regan Daniel P. , D'Alessandro Angelo , Costello James C. , Patnaik Samarjit , Marugan Juan , Zhao Rui , Ford Heide L.
Published: March 2023

Detailed description of methods used for compound 8430 synthesis, cell culture and compound 8430 pharmacokinetics.
Supplementary Data from Noninvasive MRI Native T1 Mapping Detects Response to MYCN-targeted Therapies in the Th-MYCN Model of Neuroblastoma
Authors: Zormpas-Petridis Konstantinos , Poon Evon , Clarke Matthew , Jerome Neil P. , Boult Jessica K.R. , Blackledge Matthew D. , Carceller Fernando , Koers Alexander , Barone Giuseppe , Pearson Andrew D.J. , Moreno Lucas , Anderson John , Sebire Neil , McHugh Kieran , Koh Dow-Mu , Chesler Louis , Yuan Yinyin , Robinson Simon P. , Jamin Yann
Published: March 2023

Table S1: MRI acquisition parameters, Supplementary results including Table S2 summarising the subregional analysis, Table S3: confusion matrix for cell classification, Figure S1 showing tumor volumes at the time of enrolment, Figure S2 showing individual therapy-induced changes in volume, Figure S3 showing the validation of our algorithm for the automatic classification of apoptotic cells from HE-stained slides digitised images with cleaved caspase-3 imunohistochemistry, Figure S4 showing cleaved caspase-3 imunohistochemistry.
Figure S3 from Ablation of the Brca1–Palb2 Interaction Phenocopies Fanconi Anemia in Mice
Authors: Park Dongju , Bergin Stephen M. , Jones Dan , Ru Peng , Koivisto Christopher S. , Jeon Young-Jun , Sizemore Gina M. , Kladney Raleigh D. , Hadjis Ashley , Shakya Reena , Ludwig Thomas
Published: March 2023

T cell population analysis in Brca1L1363P/L1363P thymus
Figure S2 from Ablation of the Brca1–Palb2 Interaction Phenocopies Fanconi Anemia in Mice
Authors: Park Dongju , Bergin Stephen M. , Jones Dan , Ru Peng , Koivisto Christopher S. , Jeon Young-Jun , Sizemore Gina M. , Kladney Raleigh D. , Hadjis Ashley , Shakya Reena , Ludwig Thomas
Published: March 2023

Spermatogonial germ cells failed to proliferate in Brca1L1363P/L1363P animals
Supplementary Data from Chromosomal Instability and mTORC1 Activation through PTEN Loss Contribute to Proteotoxic Stress in Ovarian Carcinoma
Authors: Chui M. Herman , Doodnauth Sasha A. , Erdmann Natalie , Tiedemann Rodger E. , Sircoulomb Fabrice , Drapkin Ronny , Shaw Patricia , Rottapel Robert
Published: March 2023

Supplementary Figure S1. Chromosome missegregation in FTSECs by pharmacologic inhibition of Mps1 and CENP-E (relates to Figures 1 and 2); Supplementary Figure S2. Comparisons of monolayer versus spheroid cultures of ovarian cancer cells (relates to Figure 4); Supplementary Figure S3. Marker expression in ovarian cancer cell cultures (relates to Figure 4); Supplementary Figure S4. mTORC1 activation potentiates aneuploidy-associated UPR induction, while suppression of mTORC1 by rapamycin causes mild cytostatic effects (relates to Figure 5); Supplementary Figure S5. mTORC1 activation sensitizes to bortezomib in ovarian cancer cells (relates to Figure 5); Supplementary Figure S6. PTEN loss sensitizes to bortezomib in TOV1946 xenografts (relates to Figure 6); Supplementary Table S1. List of primary antibodies; and Supplementary Methods.
Figure S1 from HDAC6 Inhibition Synergizes with Anti-PD-L1 Therapy in ARID1A-Inactivated Ovarian Cancer
Authors: Fukumoto Takeshi , Fatkhutdinov Nail , Zundell Joseph A. , Tcyganov Evgenii N. , Nacarelli Timothy , Karakashev Sergey , Wu Shuai , Liu Qin , Gabrilovich Dmitry I. , Zhang Rugang
Published: March 2023

Figure S1 shows ARID1A localizes to the promoter region of the PD-L1 encoding CD274 gene.
Supplementary Figure 2 from Chromothripsis in Human Breast Cancer
Authors: Bolkestein Michiel , Wong John K.L. , Thewes Verena , Körber Verena , Hlevnjak Mario , Elgaafary Shaymaa , Schulze Markus , Kommoss Felix K.F. , Sinn Hans-Peter , Anzeneder Tobias , Hirsch Steffen , Devens Frauke , Schröter Petra , Höfer Thomas , Schneeweiss Andreas , Lichter Peter , Zapatka Marc , Ernst Aurélie
Published: March 2023

Copy-number differences between cases with and without chromothripsis in the CATCH cohort
Supplementary figure and table legends from Replication Stress Drives Constitutive Activation of the DNA Damage Response and Radioresistance in Glioblastoma Stem-like Cells
Authors: Carruthers Ross D. , Ahmed Shafiq U. , Ramachandran Shaliny , Strathdee Karen , Kurian Kathreena M. , Hedley Ann , Gomez-Roman Natividad , Kalna Gabriela , Neilson Mathew , Gilmour Lesley , Stevenson Katrina H. , Hammond Ester M. , Chalmers Anthony J.
Published: March 2023

Legends for supplementary figures and tables
Supplementary Figure S5 from Replication Stress Drives Constitutive Activation of the DNA Damage Response and Radioresistance in Glioblastoma Stem-like Cells
Authors: Carruthers Ross D. , Ahmed Shafiq U. , Ramachandran Shaliny , Strathdee Karen , Kurian Kathreena M. , Hedley Ann , Gomez-Roman Natividad , Kalna Gabriela , Neilson Mathew , Gilmour Lesley , Stevenson Katrina H. , Hammond Ester M. , Chalmers Anthony J.
Published: March 2023

Supplementary Figure S5 shows additional immunofluorescent staining images and quantification in human GBM samples
Supplementary Figure S3 from Replication Stress Drives Constitutive Activation of the DNA Damage Response and Radioresistance in Glioblastoma Stem-like Cells
Authors: Carruthers Ross D. , Ahmed Shafiq U. , Ramachandran Shaliny , Strathdee Karen , Kurian Kathreena M. , Hedley Ann , Gomez-Roman Natividad , Kalna Gabriela , Neilson Mathew , Gilmour Lesley , Stevenson Katrina H. , Hammond Ester M. , Chalmers Anthony J.
Published: March 2023

Supplementary Figure S3 shows additional immunofluorescent staining and conventional IHC in GBM intracranial xenografts.
Supplementary Figure S2 from Replication Stress Drives Constitutive Activation of the DNA Damage Response and Radioresistance in Glioblastoma Stem-like Cells
Authors: Carruthers Ross D. , Ahmed Shafiq U. , Ramachandran Shaliny , Strathdee Karen , Kurian Kathreena M. , Hedley Ann , Gomez-Roman Natividad , Kalna Gabriela , Neilson Mathew , Gilmour Lesley , Stevenson Katrina H. , Hammond Ester M. , Chalmers Anthony J.
Published: March 2023

Supplementary Figure S2 shows additional data obtained during aphidicolin studies detailed in Fig 1 and additional data detailing expression of genes associated with ongoing and stalled replication forks from figure 3.
Supplementary Data from ERINA Is an Estrogen-Responsive LncRNA That Drives Breast Cancer through the E2F1/RB1 Pathway
Authors: Fang Zihui , Wang Yue , Wang Zehua , Xu Meishu , Ren Songrong , Yang Da , Hong Mei , Xie Wen
Published: March 2023

Supplementary Tables 1-3. Supplementary Table 1. shRNA sequences used. Supplementary Table 2. Primers sequences. Supplemental Table 3. Antibodies used
Video S5 from ΔNp63-Regulated Epithelial-to-Mesenchymal Transition State Heterogeneity Confers a Leader–Follower Relationship That Drives Collective Invasion
Authors: Westcott Jill M. , Camacho Sharon , Nasir Apsra , Huysman Molly E. , Rahhal Raneen , Dang Tuyen T. , Riegel Anna T. , Brekken Rolf A. , Pearson Gray W.
Published: March 2023

Live imaging of clustered spheroids containing SUM159O cells expressing control or a p63 shRNA (H2B:mCherry, red, nuclei) showing cell motility.
Video S3 from ΔNp63-Regulated Epithelial-to-Mesenchymal Transition State Heterogeneity Confers a Leader–Follower Relationship That Drives Collective Invasion
Authors: Westcott Jill M. , Camacho Sharon , Nasir Apsra , Huysman Molly E. , Rahhal Raneen , Dang Tuyen T. , Riegel Anna T. , Brekken Rolf A. , Pearson Gray W.
Published: March 2023

Live imaging of SUM159T cells embedded in ECM containing fluorescent microbeads (blue) showing ECM reorganization through bead movement.
Supplementary Figures S1-S9 from MRI Distinguishes Tumor Hypoxia Levels of Different Prognostic and Biological Significance in Cervical Cancer
Authors: Hillestad Tiril , Hompland Tord , Fjeldbo Christina S. , Skingen Vilde E. , Salberg Unn Beate , Aarnes Eva-Katrine , Nilsen Anja , Lund Kjersti V. , Evensen Tina S. , Kristensen Gunnar B. , Stokke Trond , Lyng Heidi
Published: March 2023

Comparison of MRI with histology, construction of hypoxia images, and hypoxia levels in patients
Supplementary Figure S8 from Blocking Angiopoietin-2 Promotes Vascular Damage and Growth Inhibition in Mouse Tumors Treated with Small Doses of Radiation
Authors: Kallio Pauliina , Jokinen Elina , Högström Jenny , Das Suvendu , Heino Sarika , Lähde Marianne , Brodkin Jefim , Korhonen Emilia A. , Alitalo Kari
Published: March 2023

Supplementary Figure S8
Supplementary Figure S4 from Blocking Angiopoietin-2 Promotes Vascular Damage and Growth Inhibition in Mouse Tumors Treated with Small Doses of Radiation
Authors: Kallio Pauliina , Jokinen Elina , Högström Jenny , Das Suvendu , Heino Sarika , Lähde Marianne , Brodkin Jefim , Korhonen Emilia A. , Alitalo Kari
Published: March 2023

Supplementary Figure S4
Supplemental Figure S3 from Linking Transcriptomic and Imaging Data Defines Features of a Favorable Tumor Immune Microenvironment and Identifies a Combination Biomarker for Primary Melanoma
Authors: Gartrell-Corrado Robyn D. , Chen Andrew X. , Rizk Emanuelle M. , Marks Douglas K. , Bogardus Margaret H. , Hart Thomas D. , Silverman Andrew M. , Bayan Claire-Audrey Y. , Finkel Grace G. , Barker Luke W. , Komatsubara Kimberly M. , Carvajal Richard D. , Horst Basil A. , Chang Rui , Monod Anthea , Rabadan Raul , Saenger Yvonne M.
Published: March 2023

DSP identifies differences in immune marker expression between patients with high and low HLA-DR- macrophage density. DSP analysis of immune markers per total CD45 including CD3, CD4, CD8A, CD68, CD163 as well as immunosuppressive or checkpoint markers B7-H3, B7-H4, STING, VISTA, ICOS, and OX40L comparing patients with high and low density of HLA-DR- macrophages. Statistical analysis performed using Mann-Whitney U test. ***, p<0.001; **, p< 0.01; *, p<0.05; n.s., p{greater than or equal to}0.05.
Suppl. Table 1 from Oligosaccharyltransferase Inhibition Overcomes Therapeutic Resistance to EGFR Tyrosine Kinase Inhibitors
Authors: Lopez Sambrooks Cecilia , Baro Marta , Quijano Amanda , Narayan Azeet , Cui Wei , Greninger Patricia , Egan Regina , Patel Abhijit , Benes Cyril H. , Saltzman W. Mark , Contessa Joseph N.
Published: March 2023

Results of the Lung Cancer Cell Line Screen for OST Inhibitor Sensitivity
Supplementary Figures S1-S4 and Tables S1-S3 from A Rare Missense Variant in TCF7L2 Associates with Colorectal Cancer Risk by Interacting with a GWAS-Identified Regulatory Variant in the MYC Enhancer
Authors: Chang Jiang , Tian Jianbo , Yang Yang , Zhong Rong , Li Jiaoyuan , Zhai Kan , Ke Juntao , Lou Jiao , Chen Wei , Zhu Beibei , Shen Na , Zhang Yi , Gong Yajie , Zhu Ying , Zou Danyi , Peng Xiating , Huang Kun , Miao Xiaoping
Published: March 2023

It contains the PCA plots (Figure S1), QQ plot (Figure S2), regional plots (Figure S2) and luciferase reporter assay results for rs11169571 with hsa-mir-524-5p (Figure S4). It also contains the characteristic of study subjects (Table S1) and results of discovery (Table S3) and replication stages (Table S3).
Supplemental Figure 5 from Cellular and Genetic Determinants of the Sensitivity of Cancer to α-Particle Irradiation
Authors: Yard Brian D. , Gopal Priyanka , Bannik Kristina , Siemeister Gerhard , Hagemann Urs B. , Abazeed Mohamed E.
Published: March 2023

Nrf2 activation and alpha-particle irradiation.
Supplementary Tables from The Amino-Terminal Oligomerization Domain of Angiopoietin-2 Affects Vascular Remodeling, Mammary Gland Tumor Growth, and Lung Metastasis in Mice
Authors: Kapiainen Emmi , Kihlström Minna K. , Pietilä Riikka , Kaakinen Mika , Ronkainen Veli-Pekka , Tu Hongmin , Heikkinen Anne , Devarajan Raman , Miinalainen Ilkka , Laitakari Anna , Ansarizadeh Mohammadhassan , Zhang Qin , Wei Gong-Hong , Ruddock Lloyd , Pihlajaniemi Taina , Elamaa Harri , Eklund Lauri
Published: March 2023

Supplementary Tables I-III
Supplemental Figure 3 from Palmitoylated Proteins on AML-Derived Extracellular Vesicles Promote Myeloid-Derived Suppressor Cell Differentiation via TLR2/Akt/mTOR Signaling
Authors: Tohumeken Sehmus , Baur Rebecca , Böttcher Martin , Stoll Andrej , Loschinski Romy , Panagiotidis Konstantinos , Braun Martina , Saul Domenica , Völkl Simon , Baur Andreas S. , Bruns Heiko , Mackensen Andreas , Jitschin Regina , Mougiakakos Dimitrios
Published: March 2023

(A) Induction of MDSCs by AML-EVs released by chemotherapy-pretreated AML celllines, (B) Phagocytotic activity of monocytes upon AML-EV uptake, (C) Induction of MDSCs by AML-EVs isolated by gradient ultracentrifugation, (D) Induction of pCREB by AML-EVs.
Supplemental Figure 1 from Palmitoylated Proteins on AML-Derived Extracellular Vesicles Promote Myeloid-Derived Suppressor Cell Differentiation via TLR2/Akt/mTOR Signaling
Authors: Tohumeken Sehmus , Baur Rebecca , Böttcher Martin , Stoll Andrej , Loschinski Romy , Panagiotidis Konstantinos , Braun Martina , Saul Domenica , Völkl Simon , Baur Andreas S. , Bruns Heiko , Mackensen Andreas , Jitschin Regina , Mougiakakos Dimitrios
Published: March 2023

(A) Induction of an MDSC phenotype by AML-derived soluble factors, (B) Induction of IDO-activity by AML-EVs, (C) ZetaView-based analysis of AML-EVs, and (D) Impact of chemotherapy on EV release by AML cells.
Figure S4 from Oncogenic BRAFV600E Governs Regulatory T-cell Recruitment during Melanoma Tumorigenesis
Authors: Shabaneh Tamer B. , Molodtsov Aleksey K. , Steinberg Shannon M. , Zhang Peisheng , Torres Gretel M. , Mohamed Gadisti A. , Boni Andrea , Curiel Tyler J. , Angeles Christina V. , Turk Mary Jo
Published: March 2023

Input population of tumor-experience Tregs; and effects of pertussis toxin treatment
Figure S3 from Oncogenic BRAFV600E Governs Regulatory T-cell Recruitment during Melanoma Tumorigenesis
Authors: Shabaneh Tamer B. , Molodtsov Aleksey K. , Steinberg Shannon M. , Zhang Peisheng , Torres Gretel M. , Mohamed Gadisti A. , Boni Andrea , Curiel Tyler J. , Angeles Christina V. , Turk Mary Jo
Published: March 2023

Treg accumulation kinetics in induced Braf/Pten skin grafts
Figure S1 from Oncogenic BRAFV600E Governs Regulatory T-cell Recruitment during Melanoma Tumorigenesis
Authors: Shabaneh Tamer B. , Molodtsov Aleksey K. , Steinberg Shannon M. , Zhang Peisheng , Torres Gretel M. , Mohamed Gadisti A. , Boni Andrea , Curiel Tyler J. , Angeles Christina V. , Turk Mary Jo
Published: March 2023

Tregs expand in tumor draining lymph nodes
Figure S6 from STAT3-Mediated Astrocyte Reactivity Associated with Brain Metastasis Contributes to Neurovascular Dysfunction
Authors: Sarmiento Soto Manuel , Larkin James R. , Martin Chris , Khrapitchev Alexandre A. , Maczka Melissa , Economopoulos Vasiliki , Scott Helen , Escartin Carole , Bonvento Gilles , Serres Sébastien , Sibson Nicola R.
Published: March 2023

Additional info regarding OX42
Supplementary materials and methods from GSK3β-Mediated Expression of CUG-Translated WT1 Is Critical for Tumor Progression
Authors: Yoshitomi Hisae , Lee Kun Y. , Yao Ke , Shin Seung Ho , Zhang Tianshun , Wang Qiushi , Paul Souren , Roh Eunmiri , Ryu Joohyun , Chen Hanyong , Aziz Faisal , Chakraborty Abhijit , Bode Ann M. , Dong Zigang
Published: March 2023

Supplementary materials and methods
Supplementary Information from Therapeutic Targeting of Metadherin Suppresses Colorectal and Lung Cancer Progression and Metastasis
Authors: Shen Minhong , Xie Shanshan , Rowicki Michelle , Michel Sven , Wei Yong , Hang Xiang , Wan Liling , Lu Xin , Yuan Min , Jin John F. , Jaschinski Frank , Zhou Tianhua , Klar Richard , Kang Yibin
Published: March 2023

Supplemental Figures and Tables
Supplementary Table 1 from Deciphering the Role of Intestinal Crypt Cell Populations in Resistance to Chemotherapy
Authors: Frau Carla , Jamard Catherine , Delpouve Gaspard , Guardia Gabriela D.A. , Machon Christelle , Pilati Camilla , Nevé Clémentine Le , Laurent-Puig Pierre , Guitton Jérôme , Galante Pedro A.F. , Penalva Luiz O. , Freund Jean-Noel , de la Fouchardiere Christelle , Plateroti Michelina
Published: March 2023

Supplementary Table 1
Supplementary Figures from Deciphering the Role of Intestinal Crypt Cell Populations in Resistance to Chemotherapy
Authors: Frau Carla , Jamard Catherine , Delpouve Gaspard , Guardia Gabriela D.A. , Machon Christelle , Pilati Camilla , Nevé Clémentine Le , Laurent-Puig Pierre , Guitton Jérôme , Galante Pedro A.F. , Penalva Luiz O. , Freund Jean-Noel , de la Fouchardiere Christelle , Plateroti Michelina
Published: March 2023

Supplementary Figures
Supplementary Figures and Table 1 Legends from Deciphering the Role of Intestinal Crypt Cell Populations in Resistance to Chemotherapy
Authors: Frau Carla , Jamard Catherine , Delpouve Gaspard , Guardia Gabriela D.A. , Machon Christelle , Pilati Camilla , Nevé Clémentine Le , Laurent-Puig Pierre , Guitton Jérôme , Galante Pedro A.F. , Penalva Luiz O. , Freund Jean-Noel , de la Fouchardiere Christelle , Plateroti Michelina
Published: March 2023

Supplementary Figures and Table 1 Legends
Supplementary Tab. 3 from Cyclophosphamide and Vinorelbine Activate Stem-Like CD8+ T Cells and Improve Anti-PD-1 Efficacy in Triple-Negative Breast Cancer
Authors: Falvo Paolo , Orecchioni Stefania , Hillje Roman , Raveane Alessandro , Mancuso Patrizia , Camisaschi Chiara , Luzi Lucilla , Pelicci PierGiuseppe , Bertolini Francesco
Published: March 2023

Suppl Tab 3
Supplementary Materials and Methods from ORAI2 Promotes Gastric Cancer Tumorigenicity and Metastasis through PI3K/Akt Signaling and MAPK-Dependent Focal Adhesion Disassembly
Authors: Wu Shayi , Chen Miao , Huang Jiao , Zhang Feifei , Lv Zhaojie , Jia Yongxu , Cui Yu-Zhu , Sun Liang-Zhan , Wang Ying , Tang Ying , Verhoeft Krista R. , Li Yan , Qin Yanru , Lin Xiang , Guan Xin-Yuan , Lam Ka-On
Published: March 2023

Supplementary Materials and Methods
Figure S3 from Altering the Microbiome Inhibits Tumorigenesis in a Mouse Model of Oviductal High-Grade Serous Carcinoma
Authors: Chen Lixing , Zhai Yali , Wang Yisheng , Fearon Eric R. , Núñez Gabriel , Inohara Naohiro , Cho Kathleen R.
Published: March 2023

Phylogenetic tree of fecal and vaginal microbiota during cancer development
Supplementary Table 1 from Host-Dependent Phenotypic Resistance to EGFR Tyrosine Kinase Inhibitors
Authors: Haga Yuya , Marrocco Ilaria , Noronha Ashish , Uribe Mary Luz , Nataraj Nishanth Belugali , Sekar Arunachalam , Drago-Garcia Diana , Borgoni Simone , Lindzen Moshit , Giri Suvendu , Wiemann Stefan , Tsutsumi Yasuo , Yarden Yosef
Published: March 2023

Supplementary Excel File 1
Supplementary Figures from Host-Dependent Phenotypic Resistance to EGFR Tyrosine Kinase Inhibitors
Authors: Haga Yuya , Marrocco Ilaria , Noronha Ashish , Uribe Mary Luz , Nataraj Nishanth Belugali , Sekar Arunachalam , Drago-Garcia Diana , Borgoni Simone , Lindzen Moshit , Giri Suvendu , Wiemann Stefan , Tsutsumi Yasuo , Yarden Yosef
Published: March 2023

Supplementary Figures 1~11
Supplementary Table S1 from Epigenetic Alterations and Mechanisms That Drive Resistance to Targeted Cancer Therapies
Authors: Wajapeyee Narendra , Gupta Romi
Published: March 2023

Supplementary Table S1
Supplementary Tables from Acquired RAD51C Promoter Methylation Loss Causes PARP Inhibitor Resistance in High-Grade Serous Ovarian Carcinoma
Authors: Nesic Ksenija , Kondrashova Olga , Hurley Rachel M. , McGehee Cordelia D. , Vandenberg Cassandra J. , Ho Gwo-Yaw , Lieschke Elizabeth , Dall Genevieve , Bound Nirashaa , Shield-Artin Kristy , Radke Marc , Musafer Ashan , Chai Zi Qing , Ghamsari Mohammad Reza Eftekhariyan , Harrell Maria I. , Kee Damien , Olesen Inger , McNally Orla , Traficante Nadia , Study Australian Ovarian Cancer , DeFazio Anna , Bowtell David D.L. , Swisher Elizabeth M. , Weroha S. John , Nones Katia , Waddell Nicola , Kaufmann Scott H. , Dobrovic Alexander , Wakefield Matthew J. , Scott Clare L.
Published: March 2023

All supplementary tables for the manuscript
Figure S8 from T Cells Expanded from PD-1+ Peripheral Blood Lymphocytes Share More Clones with Paired Tumor-Infiltrating Lymphocytes
Authors: Li Tiepeng , Zhao Lingdi , Yang Yonghao , Wang Yao , Zhang Yong , Guo Jindong , Chen Guangyu , Qin Peng , Xu Benling , Ma Baozhen , Zhang Fang , Shang Yiman , Li Qingjun , Zhang Kai , Yuan Dongfeng , Feng Chaojie , Ma Yan , Liu Zhiyong , Tian Zhichao , Li Hongle , Wang Shengdian , Gao Quanli
Published: March 2023

Pie graph shows the composition of TIL samples of MM-3.
Supplementary Dataset 3 from Characterizing Macrophage Diversity in Metastasis-Bearing Lungs Reveals a Lipid-Associated Macrophage Subset
Authors: Huggins Danielle N. , LaRue Rebecca S. , Wang Ying , Knutson Todd P. , Xu Yingzheng , Williams Jesse W. , Schwertfeger Kathryn L.
Published: March 2023

Gene set enrichment analysis of cluster 6 compared to gene sets from a published manuscript and MSigDB.
Supplementary Table S1 from FGFR3 Destabilizes PD-L1 via NEDD4 to Control T-cell–Mediated Bladder Cancer Immune Surveillance
Authors: Jing Weiqiang , Wang Ganyu , Cui Zhiwei , Xiong Gaozhong , Jiang Xin , Li Yue , Li Wushan , Han Bo , Chen Shouzhen , Shi Benkang
Published: March 2023

Supplementary Table S1
Supplementary Table from Reengineering Ponatinib to Minimize Cardiovascular Toxicity
Authors: Hnatiuk Anna P. , Bruyneel Arne A.N. , Tailor Dhanir , Pandrala Mallesh , Dheeraj Arpit , Li Wenqi , Serrano Ricardo , Feyen Dries A.M. , Vu Michelle M. , Amatya Prashila , Gupta Saloni , Nakauchi Yusuke , Morgado Isabel , Wiebking Volker , Liao Ronglih , Porteus Matthew H. , Majeti Ravindra , Malhotra Sanjay V. , Mercola Mark
Published: March 2023

Supplementary Table from Reengineering Ponatinib to Minimize Cardiovascular Toxicity