bluuebunny/crossref_metadata_2025 huggingface dataset:
Figure S6 from Targeting c-Myc to Overcome Acquired Resistance of EGFR Mutant NSCLC Cells to the Third-Generation EGFR Tyrosine Kinase Inhibitor, Osimertinib
Authors: Zhu Lei , Chen Zhen , Zang Hongjing , Fan Songqing , Gu Jiajia , Zhang Guojing , Sun Kevin D.-Y. , Wang Qiming , He Yong , Owonikoko Taofeek K. , Ramalingam Suresh S. , Sun Shi-Yong
Published: April 2023

Osimertinib combined with a BET inhibitor or degrader shows enhanced effects on decreasing the survival of HCC827/AR cells.
Figure S5 from Targeting c-Myc to Overcome Acquired Resistance of EGFR Mutant NSCLC Cells to the Third-Generation EGFR Tyrosine Kinase Inhibitor, Osimertinib
Authors: Zhu Lei , Chen Zhen , Zang Hongjing , Fan Songqing , Gu Jiajia , Zhang Guojing , Sun Kevin D.-Y. , Wang Qiming , He Yong , Owonikoko Taofeek K. , Ramalingam Suresh S. , Sun Shi-Yong
Published: April 2023

BET inhibition with different BET inhibitor (A) or degrader (B) synergizes with osimertinib in decreasing the survival of osimertinib-resistant cell lines.
Figure S1 from Metabolic Enzyme DLST Promotes Tumor Aggression and Reveals a Vulnerability to OXPHOS Inhibition in High-Risk Neuroblastoma
Authors: Anderson Nicole M. , Qin Xiaodan , Finan Jennifer M. , Lam Andrew , Athoe Jacob , Missiaen Rindert , Skuli Nicolas , Kennedy Annie , Saini Amandeep S. , Tao Ting , Zhu Shizhen , Nissim Itzhak , Look A. Thomas , Qing Guoliang , Simon M. Celeste , Feng Hui
Published: April 2023

Sup. Figure 1
Figure S2 from Targeting c-Myc to Overcome Acquired Resistance of EGFR Mutant NSCLC Cells to the Third-Generation EGFR Tyrosine Kinase Inhibitor, Osimertinib
Authors: Zhu Lei , Chen Zhen , Zang Hongjing , Fan Songqing , Gu Jiajia , Zhang Guojing , Sun Kevin D.-Y. , Wang Qiming , He Yong , Owonikoko Taofeek K. , Ramalingam Suresh S. , Sun Shi-Yong
Published: April 2023

The potential connection between PFS and different c-Myc alterations post EGFR-TKI relapse in EGFRm NSCLC.
Figure S1 from Targeting c-Myc to Overcome Acquired Resistance of EGFR Mutant NSCLC Cells to the Third-Generation EGFR Tyrosine Kinase Inhibitor, Osimertinib
Authors: Zhu Lei , Chen Zhen , Zang Hongjing , Fan Songqing , Gu Jiajia , Zhang Guojing , Sun Kevin D.-Y. , Wang Qiming , He Yong , Owonikoko Taofeek K. , Ramalingam Suresh S. , Sun Shi-Yong
Published: April 2023

Osimertinib suppresses phosphorylation of Akt, GSK3 and c-Myc
Supplementary Data from The Transcription Factor SLUG Uncouples Pancreatic Cancer Progression from the RAF–MEK1/2–ERK1/2 Pathway
Authors: Bilal Faiz , Arenas Enrique J. , Pedersen Kim , Martínez-Sabadell Alex , Nabet Behnam , Guruceaga Elizabeth , Vicent Silvestre , Tabernero Josep , Macarulla Teresa , Arribas Joaquín
Published: April 2023

Extended Material and Methods
Supplementary Movie 4 from Loss-of-Function Mutations in TRAF7 and KLF4 Cooperatively Activate RAS-Like GTPase Signaling and Promote Meningioma Development
Authors: Najm Paul , Zhao Peihua , Steklov Mikhail , Sewduth Raj Nayan , Baietti Maria Francesca , Pandolfi Silvia , Criem Nathan , Lechat Benoit , Maia Teresa Mendes , Van Haver Delphi , Corthout Nikky , Eyckerman Sven , Impens Francis , Sablina Anna A.
Published: April 2023

Supplementary Movie 4
Supplementary Movie 1 from Loss-of-Function Mutations in TRAF7 and KLF4 Cooperatively Activate RAS-Like GTPase Signaling and Promote Meningioma Development
Authors: Najm Paul , Zhao Peihua , Steklov Mikhail , Sewduth Raj Nayan , Baietti Maria Francesca , Pandolfi Silvia , Criem Nathan , Lechat Benoit , Maia Teresa Mendes , Van Haver Delphi , Corthout Nikky , Eyckerman Sven , Impens Francis , Sablina Anna A.
Published: April 2023

Supplementary Movie 1
Supplementary Data from CDK6 Is a Therapeutic Target in Myelofibrosis
Authors: Dutta Avik , Nath Dipmoy , Yang Yue , Le Bao T. , Mohi Golam
Published: April 2023

Supplementary Methods and Data
Supplemental Figure 3 from PPARα Agonist Fenofibrate Enhances Cancer Vaccine Efficacy
Authors: Chekaoui Arezki , Ertl Hildegund C.J.
Published: April 2023

The cartoon describes the experimental set-up used to generate the results shown in Figures 3, 5 and 7. Mice were challenged with tumor cells. Three days later they were vaccinated with AdC68-gDMelapoly. Fenofibrate or diluent treatment was started 3, 5 or 7 days later and continued daily till day 24. Mice were euthanized ~ 24 hours after the last group finished treatment and splenocytes or TILs were analyzed.
Supplemental Figure 2 from PPARα Agonist Fenofibrate Enhances Cancer Vaccine Efficacy
Authors: Chekaoui Arezki , Ertl Hildegund C.J.
Published: April 2023

The cartoon describes the experimental set-up used to generate the results shown in Figure 2. Groups of mice were vaccinated with AdC68-gDMelapoly. 3, 5 or 7 days later fenofibrate or diluent treatment was started and continued daily till day 17. One day after the last group finished treatment mice were euthanized and their splenic CD44+CD8+ cells were analyzed.
Supplementary Table 8 from Cancer-Associated Fibroblasts Promote Aggressive Gastric Cancer Phenotypes via Heat Shock Factor 1–Mediated Secretion of Extracellular Vesicles
Authors: Grunberg Nil , Pevsner-Fischer Meirav , Goshen-Lago Tal , Diment Judith , Stein Yaniv , Lavon Hagar , Mayer Shimrit , Levi-Galibov Oshrat , Friedman Gil , Ofir-Birin Yifat , Syu Li-Jyun , Migliore Cristina , Shimoni Eyal , Stemmer Salomon M. , Brenner Baruch , Dlugosz Andrzej A. , Lyden David , Regev-Rudzki Neta , Ben-Aharon Irit , Scherz-Shouval Ruth
Published: April 2023

RNA-seq data of PDPN+ cancer-associated fibroblasts (CAFs) from triple-transgenic gastric cancer mice
Supplementary Table 6 from Cancer-Associated Fibroblasts Promote Aggressive Gastric Cancer Phenotypes via Heat Shock Factor 1–Mediated Secretion of Extracellular Vesicles
Authors: Grunberg Nil , Pevsner-Fischer Meirav , Goshen-Lago Tal , Diment Judith , Stein Yaniv , Lavon Hagar , Mayer Shimrit , Levi-Galibov Oshrat , Friedman Gil , Ofir-Birin Yifat , Syu Li-Jyun , Migliore Cristina , Shimoni Eyal , Stemmer Salomon M. , Brenner Baruch , Dlugosz Andrzej A. , Lyden David , Regev-Rudzki Neta , Ben-Aharon Irit , Scherz-Shouval Ruth
Published: April 2023

Patient data and univariate analysis of gastric cancer patient cohorts
Supplementary Table 5 from Cancer-Associated Fibroblasts Promote Aggressive Gastric Cancer Phenotypes via Heat Shock Factor 1–Mediated Secretion of Extracellular Vesicles
Authors: Grunberg Nil , Pevsner-Fischer Meirav , Goshen-Lago Tal , Diment Judith , Stein Yaniv , Lavon Hagar , Mayer Shimrit , Levi-Galibov Oshrat , Friedman Gil , Ofir-Birin Yifat , Syu Li-Jyun , Migliore Cristina , Shimoni Eyal , Stemmer Salomon M. , Brenner Baruch , Dlugosz Andrzej A. , Lyden David , Regev-Rudzki Neta , Ben-Aharon Irit , Scherz-Shouval Ruth
Published: April 2023

Summary of Kaplan-Meier curves from the TCGA cohort
Table S3 from An AIB1 Isoform Alters Enhancer Access and Enables Progression of Early-Stage Triple-Negative Breast Cancer
Authors: Sharif Ghada M. , Campbell Moray J. , Nasir Apsra , Sengupta Surojeet , Graham Garrett T. , Kushner Max H. , Kietzman William B. , Schmidt Marcel O. , Pearson Gray W. , Loudig Olivier , Fineberg Susan , Wellstein Anton , Riegel Anna T.
Published: April 2023

A list of AIB1Î"4 signature genes that were used to generate KM-plots in Figure S5.
Table S1 from An AIB1 Isoform Alters Enhancer Access and Enables Progression of Early-Stage Triple-Negative Breast Cancer
Authors: Sharif Ghada M. , Campbell Moray J. , Nasir Apsra , Sengupta Surojeet , Graham Garrett T. , Kushner Max H. , Kietzman William B. , Schmidt Marcel O. , Pearson Gray W. , Loudig Olivier , Fineberg Susan , Wellstein Anton , Riegel Anna T.
Published: April 2023

A list of differentially expressed genes in tumors and cells.
Supplementary Table 12 from Cancer-Associated Fibroblasts Promote Aggressive Gastric Cancer Phenotypes via Heat Shock Factor 1–Mediated Secretion of Extracellular Vesicles
Authors: Grunberg Nil , Pevsner-Fischer Meirav , Goshen-Lago Tal , Diment Judith , Stein Yaniv , Lavon Hagar , Mayer Shimrit , Levi-Galibov Oshrat , Friedman Gil , Ofir-Birin Yifat , Syu Li-Jyun , Migliore Cristina , Shimoni Eyal , Stemmer Salomon M. , Brenner Baruch , Dlugosz Andrzej A. , Lyden David , Regev-Rudzki Neta , Ben-Aharon Irit , Scherz-Shouval Ruth
Published: April 2023

Univariate and multivariate analysis of the gastric cancer patient cohort
Supplementary Methods from An AIB1 Isoform Alters Enhancer Access and Enables Progression of Early-Stage Triple-Negative Breast Cancer
Authors: Sharif Ghada M. , Campbell Moray J. , Nasir Apsra , Sengupta Surojeet , Graham Garrett T. , Kushner Max H. , Kietzman William B. , Schmidt Marcel O. , Pearson Gray W. , Loudig Olivier , Fineberg Susan , Wellstein Anton , Riegel Anna T.
Published: April 2023

Supplementary Methods
Figure S5 from An AIB1 Isoform Alters Enhancer Access and Enables Progression of Early-Stage Triple-Negative Breast Cancer
Authors: Sharif Ghada M. , Campbell Moray J. , Nasir Apsra , Sengupta Surojeet , Graham Garrett T. , Kushner Max H. , Kietzman William B. , Schmidt Marcel O. , Pearson Gray W. , Loudig Olivier , Fineberg Susan , Wellstein Anton , Riegel Anna T.
Published: April 2023

A) Principal component analyses of RNA-Seq from MCFDCIS and MCF10A cell lines and the AIB1Î"4 corresponding clones. B) Relapse free survival and overall survival KM-plots in patients with ER-negative breast tumors separated by AIB1Î"4 top regulated genes in MCFDCIS cells. AIB1Î"4 signature gene list used to generate the KM-plots is in Supplementary table S3. C) Volcano plots illustrating differentially expressed genes (DEGs) regulated by AIB1Î"4 in MCF10A cell clones (|log2(FC)|>1.5 and -log(adj p-val)>1.3). Full list of DEGs in Supplementary table S1. D) Significantly enriched hallmark pathways from gene set enrichment analyses (GSEA) associated with AIB1Î"4 expression in MCF10A cells. Full list of enriched pathways in Supplementary table S2. E) Top canonical pathways altered in MCF10A-Î"4 compared to control MCF10A cells identified by Ingenuity Pathway Analysis (IPA). |z-score|>1, p-val <0.05. F) Relapse free survival KM-plots in patients with ER-negative breast tumors separated by AIB1Î"4 top regulated genes in MCF10A cells. AIB1Î"4 signature gene list used to generate the KM-plots in Supplementary table S3. G) Western blot of EMT markers of DCIS cells induced by DCIS-Î"4 for the indicated times. Actin is used as a loading control. Band quantification is indicated in red. H) A volcano plot illustrating differentially expressed genes (DEGs) in MCFDCIS-Î"4 when co-cultured with MCFDCIS compared to MCFDCIS-Î"4 alone. Mixed cells were then separated by flow cytometry prior to RNA-seq analysis. (|log2(FC)|>1.5 and -log(adj p-val)>1.3). Full list of DEGs in Supplementary table S1.
Figure S4 from An AIB1 Isoform Alters Enhancer Access and Enables Progression of Early-Stage Triple-Negative Breast Cancer
Authors: Sharif Ghada M. , Campbell Moray J. , Nasir Apsra , Sengupta Surojeet , Graham Garrett T. , Kushner Max H. , Kietzman William B. , Schmidt Marcel O. , Pearson Gray W. , Loudig Olivier , Fineberg Susan , Wellstein Anton , Riegel Anna T.
Published: April 2023

A) FDR-corrected shared and unique ChIP peaks of AIB1 and AIB1Î"4 in MCF10A parental cell line (10A) versus AIB1Î"4-expressing isogenic line (10A-Î"4). Shared peaks have at least 1bp overlap. B) AIB1 ChIP peaks in MCF7 cells treated for 3 hours with estradiol (E2) or vehicle (V) overlapped with MCF10A and MCFDCIS (parental and AIB1Î"4 derivative lines). MCF7 data set obtained from Zwart et al(32). C) Motifs within 200 bp of the peak summit for significant ChIP-Seq peaks were analyzed for motif enrichment using HOMER. In red are the motifs unique to AIB1Î"4 in MCF10A cells. D) FDR-corrected histone modification peaks in DCIS and DCIS-Î"4 overlapping with enhancer sites from human mammary epithelial cells (hMEC enh.) (42). E) The distribution of AIB1, H3K27ac or H3K4me1 ChIP peaks 500 kb up- and downstream of gene transcription start site (TSS). Genomic distance was divided into 5kb bins.
Supplementary Table 1 from Cancer-Associated Fibroblasts Promote Aggressive Gastric Cancer Phenotypes via Heat Shock Factor 1–Mediated Secretion of Extracellular Vesicles
Authors: Grunberg Nil , Pevsner-Fischer Meirav , Goshen-Lago Tal , Diment Judith , Stein Yaniv , Lavon Hagar , Mayer Shimrit , Levi-Galibov Oshrat , Friedman Gil , Ofir-Birin Yifat , Syu Li-Jyun , Migliore Cristina , Shimoni Eyal , Stemmer Salomon M. , Brenner Baruch , Dlugosz Andrzej A. , Lyden David , Regev-Rudzki Neta , Ben-Aharon Irit , Scherz-Shouval Ruth
Published: April 2023

Clinical characteristics of the gastric cancer patient cohort
Supplementary Materials&Methods and Supplementary Figures 1-6 from Cancer-Associated Fibroblasts Promote Aggressive Gastric Cancer Phenotypes via Heat Shock Factor 1–Mediated Secretion of Extracellular Vesicles
Authors: Grunberg Nil , Pevsner-Fischer Meirav , Goshen-Lago Tal , Diment Judith , Stein Yaniv , Lavon Hagar , Mayer Shimrit , Levi-Galibov Oshrat , Friedman Gil , Ofir-Birin Yifat , Syu Li-Jyun , Migliore Cristina , Shimoni Eyal , Stemmer Salomon M. , Brenner Baruch , Dlugosz Andrzej A. , Lyden David , Regev-Rudzki Neta , Ben-Aharon Irit , Scherz-Shouval Ruth
Published: April 2023

This file contains Supplementary Materials and Methods, Supplementary Figure Legends, and 6 Supplementary Figures with their legends
Table S3 from Gut Microbiota–Derived Short-Chain Fatty Acids Promote Prostate Cancer Growth via IGF1 Signaling
Authors: Matsushita Makoto , Fujita Kazutoshi , Hayashi Takuji , Kayama Hisako , Motooka Daisuke , Hase Hiroaki , Jingushi Kentaro , Yamamichi Gaku , Yumiba Satoru , Tomiyama Eisuke , Koh Yoko , Hayashi Yujiro , Nakano Kosuke , Wang Cong , Ishizuya Yu , Kato Taigo , Hatano Koji , Kawashima Atsunari , Ujike Takeshi , Uemura Motohide , Imamura Ryoichi , Rodriguez Pena Maria D.C. , Gordetsky Jennifer B. , Netto George J. , Tsujikawa Kazutake , Nakamura Shota , Takeda Kiyoshi , Nonomura Norio
Published: April 2023

A list of 64 cording RNAs that were up-regulated in prostate of HFD PCa mice compared to HFD+Abx PCa mice on cDNA microarrays
Figure S1 from An AIB1 Isoform Alters Enhancer Access and Enables Progression of Early-Stage Triple-Negative Breast Cancer
Authors: Sharif Ghada M. , Campbell Moray J. , Nasir Apsra , Sengupta Surojeet , Graham Garrett T. , Kushner Max H. , Kietzman William B. , Schmidt Marcel O. , Pearson Gray W. , Loudig Olivier , Fineberg Susan , Wellstein Anton , Riegel Anna T.
Published: April 2023

A) Sequence alignment of PCR amplicons of genomic DNA spanning exon 4 of AIB1 (UCSC genome browser). Black filled boxes are the sequences that align to the genome and dotted lines represent the missing/deleted sequences. AIB1 in the DCIS-Î"4 cell line is missing part of intron 3 and exon 4. Two deleted regions around exon 4 of AIB1 were identified in the 10A-Î"4 cell line; both are missing exon 4 acceptor site. B) Sanger sequencing of PCR amplicons spanning exons 2, 3, 4, 5 splice junctions. C) AIB1 mRNA between exon 2 and exon 5 in the MCFDCIS-Î"4 cell clones and the parental MCFDCIS cells. D) Western blot shows AIB1 isoforms' protein expression in MCFDCIS-Î"4 cell clones and the parental MCFDCIS cells. E) Schematic of the migration, trans-endothelial invasion and proliferation assays using real time electric cell impedance sensing (ECIS) to detect migrating cells, invasion across an endothelial monolayer or proliferation rate. F) Invasion of DCIS-Î"4-hy across an endothelial monolayer using ECIS compared to parental control DCIS cells. G) Cell proliferation of MCFDCIS (DCIS), DCIS-Î"4 and DCIS-Î"4-hy measured by electric cell impedance sensing (ECIS). A single well coated with electrodes was used to measure real time change in cell impedance as they proliferate over 80 hours (See diagram in S1E). H) Cell proliferation of MCFDCIS and MCF10A parental lines and their AIB1Î"4 expressing counterpart. ***p<0.001.
Table S2 from Gut Microbiota–Derived Short-Chain Fatty Acids Promote Prostate Cancer Growth via IGF1 Signaling
Authors: Matsushita Makoto , Fujita Kazutoshi , Hayashi Takuji , Kayama Hisako , Motooka Daisuke , Hase Hiroaki , Jingushi Kentaro , Yamamichi Gaku , Yumiba Satoru , Tomiyama Eisuke , Koh Yoko , Hayashi Yujiro , Nakano Kosuke , Wang Cong , Ishizuya Yu , Kato Taigo , Hatano Koji , Kawashima Atsunari , Ujike Takeshi , Uemura Motohide , Imamura Ryoichi , Rodriguez Pena Maria D.C. , Gordetsky Jennifer B. , Netto George J. , Tsujikawa Kazutake , Nakamura Shota , Takeda Kiyoshi , Nonomura Norio
Published: April 2023

The primers used in quantitative real-time PCR
Supplementary File S9 from Pan-Cancer Drivers Are Recurrent Transcriptional Regulatory Heterogeneities in Early-Stage Luminal Breast Cancer
Authors: Singh Shambhavi , Sutcliffe Matthew D. , Repich Kathy , Atkins Kristen A. , Harvey Jennifer A. , Janes Kevin A.
Published: April 2023

Full METASCAPE analysis of proximal RHEG drivers organized by gene annotation (Sheet 1), categorical enrichments (Sheet 2), TRRUST candidate regulators (Sheet 3), and predicted enrichments for transcription factor (TF) targets (Sheet 4).
Supplementary File S8 from Pan-Cancer Drivers Are Recurrent Transcriptional Regulatory Heterogeneities in Early-Stage Luminal Breast Cancer
Authors: Singh Shambhavi , Sutcliffe Matthew D. , Repich Kathy , Atkins Kristen A. , Harvey Jennifer A. , Janes Kevin A.
Published: April 2023

Summary of proximal RHEG drivers. For each candidate, the log2 fold change (log2FoldChange) and adjusted p value (padj) are reported when the candidate was reliably detected in the aggregated scRNA-seq data of breast epithelia from three reduction mammoplasties.
Supplementary File S7 from Pan-Cancer Drivers Are Recurrent Transcriptional Regulatory Heterogeneities in Early-Stage Luminal Breast Cancer
Authors: Singh Shambhavi , Sutcliffe Matthew D. , Repich Kathy , Atkins Kristen A. , Harvey Jennifer A. , Janes Kevin A.
Published: April 2023

Full METASCAPE analysis of RHEGs organized by gene annotation (Sheet 1), categorical enrichments (Sheet 2), TRRUST candidate regulators (Sheet 3), and predicted enrichments for transcription factor (TF) targets (Sheet 4).
Supplementary File S6 from Pan-Cancer Drivers Are Recurrent Transcriptional Regulatory Heterogeneities in Early-Stage Luminal Breast Cancer
Authors: Singh Shambhavi , Sutcliffe Matthew D. , Repich Kathy , Atkins Kristen A. , Harvey Jennifer A. , Janes Kevin A.
Published: April 2023

Pseudotime estimates for RHEGs classified as cyclers and for ten non-RHEGs classified as top cyclers by Cyclebase 3.0. The IMAGE clone used for the microarray study of synchronized HeLa cells is listed, and data from the first two cycles used for the analysis in Supplementary Fig. S10B are highlighted.
Figure S3 from Gut Microbiota–Derived Short-Chain Fatty Acids Promote Prostate Cancer Growth via IGF1 Signaling
Authors: Matsushita Makoto , Fujita Kazutoshi , Hayashi Takuji , Kayama Hisako , Motooka Daisuke , Hase Hiroaki , Jingushi Kentaro , Yamamichi Gaku , Yumiba Satoru , Tomiyama Eisuke , Koh Yoko , Hayashi Yujiro , Nakano Kosuke , Wang Cong , Ishizuya Yu , Kato Taigo , Hatano Koji , Kawashima Atsunari , Ujike Takeshi , Uemura Motohide , Imamura Ryoichi , Rodriguez Pena Maria D.C. , Gordetsky Jennifer B. , Netto George J. , Tsujikawa Kazutake , Nakamura Shota , Takeda Kiyoshi , Nonomura Norio
Published: April 2023

Alterations in systemic and local prostate expression of IGF-1 due to Abx administration.
Figure S2 from Gut Microbiota–Derived Short-Chain Fatty Acids Promote Prostate Cancer Growth via IGF1 Signaling
Authors: Matsushita Makoto , Fujita Kazutoshi , Hayashi Takuji , Kayama Hisako , Motooka Daisuke , Hase Hiroaki , Jingushi Kentaro , Yamamichi Gaku , Yumiba Satoru , Tomiyama Eisuke , Koh Yoko , Hayashi Yujiro , Nakano Kosuke , Wang Cong , Ishizuya Yu , Kato Taigo , Hatano Koji , Kawashima Atsunari , Ujike Takeshi , Uemura Motohide , Imamura Ryoichi , Rodriguez Pena Maria D.C. , Gordetsky Jennifer B. , Netto George J. , Tsujikawa Kazutake , Nakamura Shota , Takeda Kiyoshi , Nonomura Norio
Published: April 2023

Variation in the composition of gut and prostate tissue microbiota.
Figure S1 from Gut Microbiota–Derived Short-Chain Fatty Acids Promote Prostate Cancer Growth via IGF1 Signaling
Authors: Matsushita Makoto , Fujita Kazutoshi , Hayashi Takuji , Kayama Hisako , Motooka Daisuke , Hase Hiroaki , Jingushi Kentaro , Yamamichi Gaku , Yumiba Satoru , Tomiyama Eisuke , Koh Yoko , Hayashi Yujiro , Nakano Kosuke , Wang Cong , Ishizuya Yu , Kato Taigo , Hatano Koji , Kawashima Atsunari , Ujike Takeshi , Uemura Motohide , Imamura Ryoichi , Rodriguez Pena Maria D.C. , Gordetsky Jennifer B. , Netto George J. , Tsujikawa Kazutake , Nakamura Shota , Takeda Kiyoshi , Nonomura Norio
Published: April 2023

The effects of Abx administration on cancer-free prostates and serum testosterone levels, and the effects of gentamicin administration on HFD PCa mice.
Supplementary File S2 from Pan-Cancer Drivers Are Recurrent Transcriptional Regulatory Heterogeneities in Early-Stage Luminal Breast Cancer
Authors: Singh Shambhavi , Sutcliffe Matthew D. , Repich Kathy , Atkins Kristen A. , Harvey Jennifer A. , Janes Kevin A.
Published: April 2023

Summary of somatic mutations organized by somatic variant and UVABC case. For each variant, the classification is reported along with the HGVSp substitution, and predicted effect by SIFT and PolyPhen where appropriate. Read counts for the alternate allele (t_alt_count) are included with the total read count (t_depth) that together estimate the variant allele frequency (VAF). Luminal breast cancer driver genes are highlighted.
Supplementary Materials and Methods from M6A Demethylase ALKBH5 Regulates PD-L1 Expression and Tumor Immunoenvironment in Intrahepatic Cholangiocarcinoma
Authors: Qiu Xinyao , Yang Shuai , Wang Shan , Wu Jianmin , Zheng Bo , Wang Kaiting , Shen Siyun , Jeong Seogsong , Li Zhixuan , Zhu Yanjing , Wu Tong , Wu Xuan , Wu Rui , Liu Weiwei , Wang Hong-Yang , Chen Lei
Published: April 2023

Supplementary Materials and Methods
Supplementary Fig. S1-13 from M6A Demethylase ALKBH5 Regulates PD-L1 Expression and Tumor Immunoenvironment in Intrahepatic Cholangiocarcinoma
Authors: Qiu Xinyao , Yang Shuai , Wang Shan , Wu Jianmin , Zheng Bo , Wang Kaiting , Shen Siyun , Jeong Seogsong , Li Zhixuan , Zhu Yanjing , Wu Tong , Wu Xuan , Wu Rui , Liu Weiwei , Wang Hong-Yang , Chen Lei
Published: April 2023

Supplementary Fig. S1. PD-L1 was regulated by ALKBH5 independent on FTO, METTL3 or METTL14. Supplementary Fig. S2. m6A-seq and mRNA-seq of RBE-shCtrl/shALKBH5 cells. Supplementary Fig. S3. Transient ALKBH5 and its mutant H204A overexpression increased the endogenous ALKBH5 protein level. Supplementary Fig. S4. ALKBH5 deficiency accelerates the degradation of PD-L1 mRNA dependent on YTHDF2. Supplementary Fig. S5. The role of YTHDF2 in regulating PD-L1 expression. Supplementary Fig. S6. Tumor cell intrinsic ALKBH5 facilitates tumor resistance to anti-tumor T cell immunity. Supplementary Fig. S7. T cell expansion was inhibited by tumor-intrinsic ALKBH5. Supplementary Fig. S8. The role of ALKBH5 in the proliferation and migration of ICC cell in vitro. Supplementary Fig. S9. PD-L1 is essential for ALKBH5-regulated anti-tumor T cell immunity. Supplementary Fig. S10. The correlation between ALKBH5 and PD-L1 transcripts in TCGA datasets. Supplementary Fig. S11. ALKBH5 positively correlates with PD-L1 expression in clinical ICC specimens. Supplementary Fig. S12. The role of ALKBH5 in ICC immune microenvironment. Supplementary Fig. S13. ALKBH5 deficiency in ICC cells relates to immunosuppressive microenvironment.
Supplementary Data from The CD200–CD200R Axis Promotes Squamous Cell Carcinoma Metastasis via Regulation of Cathepsin K
Authors: Khan Iasha Z. , Del Guzzo Christina A. , Shao Anqi , Cho Jiyoon , Du Rong , Cohen Adrienne O. , Owens David M.
Published: April 2023

Supplemental Figures
Supplementary Data from ALKBH5 Facilitates Hypoxia-Induced Paraspeckle Assembly and IL8 Secretion to Generate an Immunosuppressive Tumor Microenvironment
Authors: Dong Feng , Qin Xiaoyang , Wang Baofeng , Li Qian , Hu Jinyang , Cheng Xuan , Guo Dongsheng , Cheng Fangling , Fang Chuan , Tan Yanli , Yan Han , He You , Sun Xiaoyu , Yuan Ye , Liu Hang , Li Ting , Zhao Yingying , Kang Chunsheng , Wu Xudong
Published: April 2023

Figure S1-7, Table S1-2
Supplementary Data from The CD200–CD200R Axis Promotes Squamous Cell Carcinoma Metastasis via Regulation of Cathepsin K
Authors: Khan Iasha Z. , Del Guzzo Christina A. , Shao Anqi , Cho Jiyoon , Du Rong , Cohen Adrienne O. , Owens David M.
Published: April 2023

Supplemental Tables
Supplemental figure legends from The CD200–CD200R Axis Promotes Squamous Cell Carcinoma Metastasis via Regulation of Cathepsin K
Authors: Khan Iasha Z. , Del Guzzo Christina A. , Shao Anqi , Cho Jiyoon , Du Rong , Cohen Adrienne O. , Owens David M.
Published: April 2023

Supplemental figure legends
Supplementary Information from In Vivo Imaging of Methionine Aminopeptidase II for Prostate Cancer Risk Stratification
Authors: Xie Jinghang , Rice Meghan A. , Chen Zixin , Cheng Yunfeng , Hsu En-Chi , Chen Min , Song Guosheng , Cui Liyang , Zhou Kaixiang , Castillo Jessa B. , Zhang Chiyuan A. , Shen Bin , Chin Frederick T. , Kunder Christian A. , Brooks James D. , Stoyanova Tanya , Rao Jianghong
Published: April 2023

Methods, Figures S1-21, NMR & MS spectra
Table S5 from GLUT1 Expression in Tumor-Associated Neutrophils Promotes Lung Cancer Growth and Resistance to Radiotherapy
Authors: Ancey Pierre-Benoit , Contat Caroline , Boivin Gael , Sabatino Silvia , Pascual Justine , Zangger Nadine , Perentes Jean Yannis , Peters Solange , Abel E. Dale , Kirsch David G. , Rathmell Jeffrey C. , Vozenin Marie-Catherine , Meylan Etienne
Published: April 2023

Significant differentially expressed Hallmarks upregulated in control versus Glut1KO TANs.
Supplementary Data from A Wnt-Independent LGR4–EGFR Signaling Axis in Cancer Metastasis
Authors: Yue Fei , Jiang Weiyu , Ku Amy T. , Young Adelaide I.J. , Zhang Weijie , Souto Eric P. , Gao Yankun , Yu Zihan , Wang Yi , Creighton Chad J. , Nagi Chandandeep , Wang Tao , Hilsenbeck Susan G. , Feng Xin-Hua , Huang Shixia , Coarfa Cristian , Zhang Xiang H.-F. , Liu Qingyun , Lin Xia , Li Yi
Published: April 2023

Fullmoon antibody array and TCGA dataset analyses
Table S1 from GLUT1 Expression in Tumor-Associated Neutrophils Promotes Lung Cancer Growth and Resistance to Radiotherapy
Authors: Ancey Pierre-Benoit , Contat Caroline , Boivin Gael , Sabatino Silvia , Pascual Justine , Zangger Nadine , Perentes Jean Yannis , Peters Solange , Abel E. Dale , Kirsch David G. , Rathmell Jeffrey C. , Vozenin Marie-Catherine , Meylan Etienne
Published: April 2023

Key Resources Table
Supplementary Figures from GLUT1 Expression in Tumor-Associated Neutrophils Promotes Lung Cancer Growth and Resistance to Radiotherapy
Authors: Ancey Pierre-Benoit , Contat Caroline , Boivin Gael , Sabatino Silvia , Pascual Justine , Zangger Nadine , Perentes Jean Yannis , Peters Solange , Abel E. Dale , Kirsch David G. , Rathmell Jeffrey C. , Vozenin Marie-Catherine , Meylan Etienne
Published: April 2023

This file contains the supplementary Figures S1-S7
Supplementary Methods, Tables, and Figures from Megakaryocytes Mediate Hyperglycemia-Induced Tumor Metastasis
Authors: Wu Biying , Ye Ying , Xie Sisi , Li Yintao , Sun Xiaoting , Lv Mengyuan , Yang Ling , Cui Nan , Chen Qiying , Jensen Lasse D. , Cui Dongmei , Huang Guichun , Zuo Ji , Zhang Shaochong , Liu Wen , Yang Yunlong
Published: April 2023

Supplementary Methods, Tables, and Figures
Supplementary Data from Inhibition of the FACT Complex Targets Aberrant Hedgehog Signaling and Overcomes Resistance to Smoothened Antagonists
Authors: Mo Jialin , Liu Fang , Sun Xi , Huang Hongting , Tan Kezhe , Zhao Xiaojing , Li Rui , Jiang Wenyan , Sui Yi , Chen Xiaosong , Shen Kunwei , Zhang Liye , Ma Jie , Zhao Kewen , Tang Yujie
Published: April 2023

Supplementary Table S2_Candidates_ sgRNA library screening results
Supplementary Data from Inhibition of the FACT Complex Targets Aberrant Hedgehog Signaling and Overcomes Resistance to Smoothened Antagonists
Authors: Mo Jialin , Liu Fang , Sun Xi , Huang Hongting , Tan Kezhe , Zhao Xiaojing , Li Rui , Jiang Wenyan , Sui Yi , Chen Xiaosong , Shen Kunwei , Zhang Liye , Ma Jie , Zhao Kewen , Tang Yujie
Published: April 2023

Supplementary Table S3_Short Tandem Repeat (STR) analysis
Table S2 from Nuclear Receptor Coactivator NCOA3 Regulates UV Radiation–Induced DNA Damage and Melanoma Susceptibility
Authors: de Semir David , Bezrookove Vladimir , Nosrati Mehdi , Dar Altaf A. , Miller James R. , Leong Stanley P. , Kim Kevin B. , Liao Wilson , Soroceanu Liliana , McAllister Sean , Debs Robert J. , Schadendorf Dirk , Leachman Sancy A. , Cleaver James E. , Kashani-Sabet Mohammed
Published: April 2023

Supplementary Table 2
Legends to Supplementary Data from Nuclear Receptor Coactivator NCOA3 Regulates UV Radiation–Induced DNA Damage and Melanoma Susceptibility
Authors: de Semir David , Bezrookove Vladimir , Nosrati Mehdi , Dar Altaf A. , Miller James R. , Leong Stanley P. , Kim Kevin B. , Liao Wilson , Soroceanu Liliana , McAllister Sean , Debs Robert J. , Schadendorf Dirk , Leachman Sancy A. , Cleaver James E. , Kashani-Sabet Mohammed
Published: April 2023

Legends to Supplementary Data
Supplementary Data from Phosphoinositide-Binding Protein TIPE1 Promotes Alternative Activation of Macrophages and Tumor Progression via PIP3/Akt/TGFβ Axis
Authors: Cheng Yang , Bai Fuxiang , Ren Xiaolei , Sun Renhui , Guo Xiaowei , Liu Wen , Wang Bo , Yang Yongheng , Zhang Xiaolu , Xu Yong , Li Chunyang , Yang Xiaoyun , Gao Lifen , Ma Chunhong , Li Xueen , Liang Xiaohong
Published: April 2023

Supplementary Data from Phosphoinositide-Binding Protein TIPE1 Promotes Alternative Activation of Macrophages and Tumor Progression via PIP3/Akt/TGFβ Axis
Figure S8 from Nuclear Receptor Coactivator NCOA3 Regulates UV Radiation–Induced DNA Damage and Melanoma Susceptibility
Authors: de Semir David , Bezrookove Vladimir , Nosrati Mehdi , Dar Altaf A. , Miller James R. , Leong Stanley P. , Kim Kevin B. , Liao Wilson , Soroceanu Liliana , McAllister Sean , Debs Robert J. , Schadendorf Dirk , Leachman Sancy A. , Cleaver James E. , Kashani-Sabet Mohammed
Published: April 2023

Supplementary Figure 8
Figure S6 from Nuclear Receptor Coactivator NCOA3 Regulates UV Radiation–Induced DNA Damage and Melanoma Susceptibility
Authors: de Semir David , Bezrookove Vladimir , Nosrati Mehdi , Dar Altaf A. , Miller James R. , Leong Stanley P. , Kim Kevin B. , Liao Wilson , Soroceanu Liliana , McAllister Sean , Debs Robert J. , Schadendorf Dirk , Leachman Sancy A. , Cleaver James E. , Kashani-Sabet Mohammed
Published: April 2023

Supplementary Figure 6
Figure S5 from Nuclear Receptor Coactivator NCOA3 Regulates UV Radiation–Induced DNA Damage and Melanoma Susceptibility
Authors: de Semir David , Bezrookove Vladimir , Nosrati Mehdi , Dar Altaf A. , Miller James R. , Leong Stanley P. , Kim Kevin B. , Liao Wilson , Soroceanu Liliana , McAllister Sean , Debs Robert J. , Schadendorf Dirk , Leachman Sancy A. , Cleaver James E. , Kashani-Sabet Mohammed
Published: April 2023

Supplementary Figure 5
Figure S4 from Nuclear Receptor Coactivator NCOA3 Regulates UV Radiation–Induced DNA Damage and Melanoma Susceptibility
Authors: de Semir David , Bezrookove Vladimir , Nosrati Mehdi , Dar Altaf A. , Miller James R. , Leong Stanley P. , Kim Kevin B. , Liao Wilson , Soroceanu Liliana , McAllister Sean , Debs Robert J. , Schadendorf Dirk , Leachman Sancy A. , Cleaver James E. , Kashani-Sabet Mohammed
Published: April 2023

Supplementary Figure 4
Supplementary Figure from Secretion of IL1 by Dedifferentiated Melanoma Cells Inhibits JAK1-STAT3–Driven Actomyosin Contractility of Lymph Node Fibroblastic Reticular Cells
Authors: Rovera Christopher , Berestjuk Ilona , Lecacheur Margaux , Tavernier Cassandre , Diazzi Serena , Pisano Sabrina , Irondelle Marie , Mallavialle Aude , Albrengues Jean , Gaggioli Cédric , Girard Christophe A. , Passeron Thierry , Deckert Marcel , Tartare-Deckert Sophie , Prod'homme Virginie
Published: April 2023

Supplementary Figure from Secretion of IL1 by Dedifferentiated Melanoma Cells Inhibits JAK1-STAT3–Driven Actomyosin Contractility of Lymph Node Fibroblastic Reticular Cells
Figure S3 from Nuclear Receptor Coactivator NCOA3 Regulates UV Radiation–Induced DNA Damage and Melanoma Susceptibility
Authors: de Semir David , Bezrookove Vladimir , Nosrati Mehdi , Dar Altaf A. , Miller James R. , Leong Stanley P. , Kim Kevin B. , Liao Wilson , Soroceanu Liliana , McAllister Sean , Debs Robert J. , Schadendorf Dirk , Leachman Sancy A. , Cleaver James E. , Kashani-Sabet Mohammed
Published: April 2023

Supplementary Figure 3
Figure S1 from Nuclear Receptor Coactivator NCOA3 Regulates UV Radiation–Induced DNA Damage and Melanoma Susceptibility
Authors: de Semir David , Bezrookove Vladimir , Nosrati Mehdi , Dar Altaf A. , Miller James R. , Leong Stanley P. , Kim Kevin B. , Liao Wilson , Soroceanu Liliana , McAllister Sean , Debs Robert J. , Schadendorf Dirk , Leachman Sancy A. , Cleaver James E. , Kashani-Sabet Mohammed
Published: April 2023

Supplementary Figure 1
Supplementary Data from Neuroblastoma Formation Requires Unconventional CD4 T Cells and Arginase-1–Dependent Myeloid Cells
Authors: Van de Velde Lee-Ann , Allen E. Kaitlynn , Crawford Jeremy Chase , Wilson Taylor L. , Guy Clifford S. , Russier Marion , Zeitler Leonie , Bahrami Armita , Finkelstein David , Pelletier Stephane , Schultz-Cherry Stacey , Thomas Paul G. , Murray Peter J.
Published: April 2023

Table S1
Supplementary Data from Secretion of IL1 by Dedifferentiated Melanoma Cells Inhibits JAK1-STAT3–Driven Actomyosin Contractility of Lymph Node Fibroblastic Reticular Cells
Authors: Rovera Christopher , Berestjuk Ilona , Lecacheur Margaux , Tavernier Cassandre , Diazzi Serena , Pisano Sabrina , Irondelle Marie , Mallavialle Aude , Albrengues Jean , Gaggioli Cédric , Girard Christophe A. , Passeron Thierry , Deckert Marcel , Tartare-Deckert Sophie , Prod'homme Virginie
Published: April 2023

Supplementary Data from Secretion of IL1 by Dedifferentiated Melanoma Cells Inhibits JAK1-STAT3–Driven Actomyosin Contractility of Lymph Node Fibroblastic Reticular Cells
Supplementary Data from Neuroblastoma Formation Requires Unconventional CD4 T Cells and Arginase-1–Dependent Myeloid Cells
Authors: Van de Velde Lee-Ann , Allen E. Kaitlynn , Crawford Jeremy Chase , Wilson Taylor L. , Guy Clifford S. , Russier Marion , Zeitler Leonie , Bahrami Armita , Finkelstein David , Pelletier Stephane , Schultz-Cherry Stacey , Thomas Paul G. , Murray Peter J.
Published: April 2023

Table S2
Supplementary Data from Neuroblastoma Formation Requires Unconventional CD4 T Cells and Arginase-1–Dependent Myeloid Cells
Authors: Van de Velde Lee-Ann , Allen E. Kaitlynn , Crawford Jeremy Chase , Wilson Taylor L. , Guy Clifford S. , Russier Marion , Zeitler Leonie , Bahrami Armita , Finkelstein David , Pelletier Stephane , Schultz-Cherry Stacey , Thomas Paul G. , Murray Peter J.
Published: April 2023

Table S3
Supplementary Figure 1 from STINGing Viral Tumors: What We Know from Head and Neck Cancers
Authors: Saulters Emma , Woolley John F. , Varadarajan Shankar , Jones Terence M. , Dahal Lekh N.
Published: April 2023

Supplemental Figure 1. TMEM173 gene encoding STING expression across HPV+ and HPV- HNSCC
Supplementary Data from Neuroblastoma Formation Requires Unconventional CD4 T Cells and Arginase-1–Dependent Myeloid Cells
Authors: Van de Velde Lee-Ann , Allen E. Kaitlynn , Crawford Jeremy Chase , Wilson Taylor L. , Guy Clifford S. , Russier Marion , Zeitler Leonie , Bahrami Armita , Finkelstein David , Pelletier Stephane , Schultz-Cherry Stacey , Thomas Paul G. , Murray Peter J.
Published: April 2023

Supplemental Figure file
Supplementary File 3 from BRAF Inhibitors Reprogram Cancer-Associated Fibroblasts to Drive Matrix Remodeling and Therapeutic Escape in Melanoma
Authors: Liu Tianyi , Zhou Linli , Xiao Yao , Andl Thomas , Zhang Yuhang
Published: April 2023

Supplementary File 3
CAF sequencing BRAF and NRAS results
Supplementary File 2 from BRAF Inhibitors Reprogram Cancer-Associated Fibroblasts to Drive Matrix Remodeling and Therapeutic Escape in Melanoma
Authors: Liu Tianyi , Zhou Linli , Xiao Yao , Andl Thomas , Zhang Yuhang
Published: April 2023

Supplementary File 2
Additional materials and methods
Table S7 from Alterations in the Global Proteome and Phosphoproteome in Third Generation EGFR TKI Resistance Reveal Drug Targets to Circumvent Resistance
Authors: Zhang Xu , Maity Tapan K. , Ross Karen E. , Qi Yue , Cultraro Constance M. , Bahta Meriam , Pitts Stephanie , Keswani Meghana , Gao Shaojian , Nguyen Khoa Dang P. , Cowart Julie , Kirkali Fatos , Wu Cathy , Guha Udayan
Published: April 2023

Table S7
Supplementary Table 5 from Estrogen Receptor β-Mediated Inhibition of Actin-Based Cell Migration Suppresses Metastasis of Inflammatory Breast Cancer
Authors: Thomas Christoforos , Karagounis Ilias V. , Srivastava Ratnesh K. , Vrettos Nicholas , Nikolos Fotis , Francois Noëlle , Huang Menggui , Gong Siliang , Long Qi , Kumar Sushil , Koumenis Constantinos , Krishnamurthy Savitri , Ueno Naoto T. , Chakrabarti Rumela , Maity Amit
Published: April 2023

Table with patient characteristics
Supplementary Data from Estrogen Receptor β-Mediated Inhibition of Actin-Based Cell Migration Suppresses Metastasis of Inflammatory Breast Cancer
Authors: Thomas Christoforos , Karagounis Ilias V. , Srivastava Ratnesh K. , Vrettos Nicholas , Nikolos Fotis , Francois Noëlle , Huang Menggui , Gong Siliang , Long Qi , Kumar Sushil , Koumenis Constantinos , Krishnamurthy Savitri , Ueno Naoto T. , Chakrabarti Rumela , Maity Amit
Published: April 2023

Supplementary figures 1-8. Supplementary Figure 1. ERβ expression is associated with clinical outcome in IBC patients. Supplementary Figure 2. Associations between ERβ expression and clinical outcome in patients with breast cancer. Supplementary Figure 3. Morphology of IBC cells with different ERβ levels. Supplementary Figure 4. Invasion and migration of IBC cells with different ERβ expression Supplementary Figure 5. ERβ affects metastasis of IBC tumors. Supplementary Figure 6. ERβ regulates genes that control actin cytoskeleton reorganization. Supplementary Figure 7. ERβ regulates genes that are involved in acting cytoskeleton remodeling. Supplementary Figure 8. RhoC and ERβ expression in IBC cells.
Supplementary Table2 from SLFN11 Inactivation Induces Proteotoxic Stress and Sensitizes Cancer Cells to Ubiquitin Activating Enzyme Inhibitor TAK-243
Authors: Murai Yasuhisa , Jo Ukhyun , Murai Junko , Jenkins Lisa M. , Huang Shar-Yin N. , Chakka Sirisha , Chen Lu , Cheng Ken , Fukuda Shinsaku , Takebe Naoko , Pommier Yves
Published: April 2023

Hits from BioID pull down and mass spectrometry
Figure from Estrogen Receptor β-Mediated Inhibition of Actin-Based Cell Migration Suppresses Metastasis of Inflammatory Breast Cancer
Authors: Thomas Christoforos , Karagounis Ilias V. , Srivastava Ratnesh K. , Vrettos Nicholas , Nikolos Fotis , Francois Noëlle , Huang Menggui , Gong Siliang , Long Qi , Kumar Sushil , Koumenis Constantinos , Krishnamurthy Savitri , Ueno Naoto T. , Chakrabarti Rumela , Maity Amit
Published: April 2023

Immunoblots (original images)
Supplementary Data from Stem Cell Factor SOX2 Confers Ferroptosis Resistance in Lung Cancer via Upregulation of SLC7A11
Authors: Wang Xinbo , Chen Yueqing , Wang Xudong , Tian Hongling , Wang Yanjin , Jin Jiali , Shan Zezhi , Liu Yu'e , Cai Zhenyu , Tong Xinyuan , Luan Yi , Tan Xiao , Luan Bing , Ge Xin , Ji Hongbin , Jiang Xuejun , Wang Ping
Published: April 2023

Supplementary Data
Supplementary Information from E2F1 and E2F2-Mediated Repression of CPT2 Establishes a Lipid-Rich Tumor-Promoting Environment
Authors: González-Romero Francisco , Mestre Daniela , Aurrekoetxea Igor , O'Rourke Colm J. , Andersen Jesper B. , Woodhoo Ashwin , Tamayo-Caro Miguel , Varela-Rey Marta , Palomo-Irigoyen Marta , Gómez-Santos Beatriz , de Urturi Diego Sáenz , Núñez-García Maitane , García-Rodríguez Juan L. , Fernández-Ares Larraitz , Buqué Xabier , Iglesias-Ara Ainhoa , Bernales Irantzu , De Juan Virginia Gutierrez , Delgado Teresa C. , Goikoetxea-Usandizaga Naroa , Lee Richard , Bhanot Sanjay , Delgado Igotz , Perugorria Maria J. , Errazti Gaizka , Mosteiro Lorena , Gaztambide Sonia , Martinez de la Piscina Idoia , Iruzubieta Paula , Crespo Javier , Banales Jesus M. , Martínez-Chantar Maria L. , Castaño Luis , Zubiaga Ana M. , Aspichueta Patricia
Published: April 2023

1-Supplementary methods 2-Supplementary Figure legends 3-Supplementary references
Supplementary Table from Phosphorylation of SHP2 at Tyr62 Enables Acquired Resistance to SHP2 Allosteric Inhibitors in FLT3-ITD–Driven AML
Authors: Pfeiffer Anamarija , Franciosa Giulia , Locard-Paulet Marie , Piga Ilaria , Reckzeh Kristian , Vemulapalli Vidyasiri , Blacklow Stephen C. , Theilgaard-Mönch Kim , Jensen Lars J. , Olsen Jesper V.
Published: April 2023

Supplementary Table from Phosphorylation of SHP2 at Tyr62 Enables Acquired Resistance to SHP2 Allosteric Inhibitors in FLT3-ITD–Driven AML
Supplementary Figure 3 from YAP and β-Catenin Cooperate to Drive Oncogenesis in Basal Breast Cancer
Authors: Quinn Hazel M. , Vogel Regina , Popp Oliver , Mertins Philipp , Lan Linxiang , Messerschmidt Clemens , Landshammer Alexandro , Lisek Kamil , Château-Joubert Sophie , Marangoni Elisabetta , Koren Elle , Fuchs Yaron , Birchmeier Walter
Published: April 2023

Supplementary figure related to figure 3. Supplementary Fig. 3. Wnt-Met signalling induces YAP-dependent luminal-to-basal transition.
Supplementary Data from Loss of FBXW7 Correlates with Increased IDH1 Expression in Glioma and Enhances IDH1-Mutant Cancer Cell Sensitivity to Radiation
Authors: Yang Zhuo , Hu Nan , Wang Weiwei , Hu Weihua , Zhou Shaolong , Shi Jianxiang , Li Minghe , Jing Zhou , Chen Chao , Zhang Xuyang , Yang Ruyi , Fu Xudong , Wang Xinjun
Published: April 2023

Supplementary Data
Supplementary Data from Cytoplasmic Localization of Prostate-Specific Membrane Antigen Inhibitors May Confer Advantages for Targeted Cancer Therapies
Authors: Matthias Jessica , Engelhardt Johann , Schäfer Martin , Bauder-Wüst Ulrike , Meyer Philipp T. , Haberkorn Uwe , Eder Matthias , Kopka Klaus , Hell Stefan W. , Eder Ann-Christin
Published: April 2023

Supplementary Methods Supplementary Figures Supplementary Tables
Supplementary Table S1 from Supraphysiologic Testosterone Induces Ferroptosis and Activates Immune Pathways through Nucleophagy in Prostate Cancer
Authors: Kumar Rajendra , Mendonca Janet , Owoyemi Olutosin , Boyapati Kavya , Thomas Naiju , Kanacharoen Suthicha , Coffey Max , Topiwala Deven , Gomes Carolina , Ozbek Busra , Jones Tracy , Rosen Marc , Dong Liang , Wiens Sadie , Brennen W. Nathaniel , Isaacs John T. , De Marzo Angelo M. , Markowski Mark C. , Antonarakis Emmanuel S. , Qian David Z. , Pienta Kenneth J. , Pardoll Drew M. , Carducci Michael A. , Denmeade Samuel R. , Kachhap Sushant K.
Published: April 2023

Oligo sequences
Movie S7 from Cytoplasmic Localization of Prostate-Specific Membrane Antigen Inhibitors May Confer Advantages for Targeted Cancer Therapies
Authors: Matthias Jessica , Engelhardt Johann , Schäfer Martin , Bauder-Wüst Ulrike , Meyer Philipp T. , Haberkorn Uwe , Eder Matthias , Kopka Klaus , Hell Stefan W. , Eder Ann-Christin
Published: April 2023

confocal control LNCaP SiR-lysosome 5um
Movie S6 from Cytoplasmic Localization of Prostate-Specific Membrane Antigen Inhibitors May Confer Advantages for Targeted Cancer Therapies
Authors: Matthias Jessica , Engelhardt Johann , Schäfer Martin , Bauder-Wüst Ulrike , Meyer Philipp T. , Haberkorn Uwe , Eder Matthias , Kopka Klaus , Hell Stefan W. , Eder Ann-Christin
Published: April 2023

confocal after STED LNCaP PSMA-STAR 600 SiR-lysosome 5um
Supplementary Data from N6-Methyladenosine Regulates mRNA Stability and Translation Efficiency of KRT7 to Promote Breast Cancer Lung Metastasis
Authors: Chen Feng , Chen Zhuojia , Guan Tao , Zhou Yan , Ge Lichen , Zhang Haisheng , Wu Yingmin , Jiang Guan-Min , He Weiling , Li Jiexin , Wang Hongsheng
Published: April 2023

Table S2
Movie S1 from Cytoplasmic Localization of Prostate-Specific Membrane Antigen Inhibitors May Confer Advantages for Targeted Cancer Therapies
Authors: Matthias Jessica , Engelhardt Johann , Schäfer Martin , Bauder-Wüst Ulrike , Meyer Philipp T. , Haberkorn Uwe , Eder Matthias , Kopka Klaus , Hell Stefan W. , Eder Ann-Christin
Published: April 2023

confocal LNCaP Glu-urea-Lys-HBED-CC-STAR-RED
Figure S4 from A Dual PI3K/HDAC Inhibitor Induces Immunogenic Ferroptosis to Potentiate Cancer Immune Checkpoint Therapy
Authors: Fan Fushun , Liu Pei , Bao Rudi , Chen Jian , Zhou Minhua , Mo Zhenxian , Ma Yaru , Liu Haiqi , Zhou Yiping , Cai Xiong , Qian Changgeng , Liu Xinjian
Published: April 2023

The pharmacokinetic (PK) parameters and anti-tumor efficacy of BEBT-908.
Figure S4 from Fc-Optimized Anti-CCR8 Antibody Depletes Regulatory T Cells in Human Tumor Models
Authors: Campbell Joseph R. , McDonald Bryan R. , Mesko Paul B. , Siemers Nathan O. , Singh Priti B. , Selby Mark , Sproul Tim W. , Korman Alan J. , Vlach Logan M. , Houser Jeff , Sambanthamoorthy Sharmila , Lu Kai , Hatcher Sandra V. , Lohre Jack , Jain Renu , Lan Ruth Y.
Published: April 2023

Figure S4 shows donor immune cell reconstitution in the blood post Ccr8-/- donor bone marrow transplant
Supplementary Table S6 from A Combinatorial CRISPR–Cas9 Screen Identifies Ifenprodil as an Adjunct to Sorafenib for Liver Cancer Treatment
Authors: Xu Feng , Tong Man , Tong Cindy S.W. , Chan Becky K.C. , Chu Hoi Yee , Wong Tin Lok , Fong John H.C. , Cheung Maggie S.H. , Mak Kylie Hin-Man , Pardeshi Lakhansing , Huang Yuanhua , Wong Koon Ho , Choi Gigi C.G. , Ma Stephanie , Wong Alan S.L.
Published: April 2023

Supplementary Table S6
Figure S1 from Exogenous and Endogenous Sources of Serine Contribute to Colon Cancer Metabolism, Growth, and Resistance to 5-Fluorouracil
Authors: Montrose David C. , Saha Suchandrima , Foronda Miguel , McNally Erin M. , Chen Justin , Zhou Xi Kathy , Ha Taehoon , Krumsiek Jan , Buyukozkan Mustafa , Verma Akanksha , Elemento Olivier , Yantiss Rhonda K. , Chen Qiuying , Gross Steven S. , Galluzzi Lorenzo , Dow Lukas E. , Dannenberg Andrew J.
Published: April 2023

Supplementary Figure S1. High vs. low serine synthesis gene expression in human colon tumors is determined using a probabilistically-motivated method.
Supplementary Table from Comprehensive Analysis of Alternative Splicing in Gastric Cancer Identifies Epithelial–Mesenchymal Transition Subtypes Associated with Survival
Authors: Jun Yukyung , Suh Yun-Suhk , Park SungHee , Lee Jieun , Kim Jong-Il , Lee Sanghyuk , Lee Wan-Ping , Anczuków Olga , Yang Han-Kwang , Lee Charles
Published: April 2023

Supplementary Table from Comprehensive Analysis of Alternative Splicing in Gastric Cancer Identifies Epithelial–Mesenchymal Transition Subtypes Associated with Survival
Supplementary Figure from Comprehensive Analysis of Alternative Splicing in Gastric Cancer Identifies Epithelial–Mesenchymal Transition Subtypes Associated with Survival
Authors: Jun Yukyung , Suh Yun-Suhk , Park SungHee , Lee Jieun , Kim Jong-Il , Lee Sanghyuk , Lee Wan-Ping , Anczuków Olga , Yang Han-Kwang , Lee Charles
Published: April 2023

Supplementary Figure from Comprehensive Analysis of Alternative Splicing in Gastric Cancer Identifies Epithelial–Mesenchymal Transition Subtypes Associated with Survival
Supplementary Data from Comprehensive Analysis of Alternative Splicing in Gastric Cancer Identifies Epithelial–Mesenchymal Transition Subtypes Associated with Survival
Authors: Jun Yukyung , Suh Yun-Suhk , Park SungHee , Lee Jieun , Kim Jong-Il , Lee Sanghyuk , Lee Wan-Ping , Anczuków Olga , Yang Han-Kwang , Lee Charles
Published: April 2023

Supplementary Data from Comprehensive Analysis of Alternative Splicing in Gastric Cancer Identifies Epithelial–Mesenchymal Transition Subtypes Associated with Survival
Supplementary Figures from KMT9 Controls Stemness and Growth of Colorectal Cancer
Authors: Berlin Christopher , Cottard Félicie , Willmann Dominica , Urban Sylvia , Tirier Stephan M. , Marx Lisa , Rippe Karsten , Schmitt Mark , Petrocelli Valentina , Greten Florian R. , Fichtner-Feigl Stefan , Kesselring Rebecca , Metzger Eric , Schüle Roland
Published: April 2023

File with all the Supplementary Figures (Supplementary Fig. S1-S4)