bluuebunny/crossref_metadata_2025 huggingface dataset:
Supplementary Table S1 from Pulsed High-Intensity Focused Ultrasound Enhances Delivery of Doxorubicin in a Preclinical Model of Pancreatic Cancer
Authors: Li Tong , Wang Yak-Nam , Khokhlova Tatiana D. , D'Andrea Samantha , Starr Frank , Chen Hong , McCune Jeannine S. , Risler Linda J. , Mashadi-Hossein Afshin , Hingorani Sunil R. , Chang Amy , Hwang Joo Ha
Published: March 2023

Supplementary Table S1. Estimated regression coefficients from equation 1.
Supplementary figure 6 from Ceacam1L Modulates STAT3 Signaling to Control the Proliferation of Glioblastoma-Initiating Cells
Authors: Kaneko Sadahiro , Nakatani Yuka , Takezaki Tatsuya , Hide Takuichiro , Yamashita Daisuke , Ohtsu Naoki , Ohnishi Takanori , Terasaka Shunsuke , Houkin Kiyohiro , Kondo Toru
Published: March 2023

Supplementary figure 6. Ceacam1+/EGFR+ GBM cells associate with CD68+ microglia
Supplementary Table S5 from Identification of P450 Oxidoreductase as a Major Determinant of Sensitivity to Hypoxia-Activated Prodrugs
Authors: Hunter Francis W. , Young Richard J. , Shalev Zvi , Vellanki Ravi N. , Wang Jingli , Gu Yongchuan , Joshi Naveen , Sreebhavan Sreevalsan , Weinreb Ilan , Goldstein David P. , Moffat Jason , Ketela Troy , Brown Kevin R. , Koritzinsky Marianne , Solomon Benjamin , Rischin Danny , Wilson William R. , Wouters Bradly G.
Published: March 2023

Quantitative parameters of whole-genome and reductase shRNA screens.
Supplemental Figure 2 from Spatially Resolved Metabolic Phenotyping of Breast Cancer by Desorption Electrospray Ionization Mass Spectrometry
Authors: Guenther Sabine , Muirhead Laura J. , Speller Abigail V.M. , Golf Ottmar , Strittmatter Nicole , Ramakrishnan Rathi , Goldin Robert D. , Jones Emrys , Veselkov Kirill , Nicholson Jeremy , Darzi Ara , Takats Zoltan
Published: March 2023

Supplemental Figure 2. Plots showing the logarithmic intensity distribution of several highly predictive compounds in normal glandular tissue and tumors of different grade and hormone receptor status.
Supplementary Figure S4 from β-Catenin Promotes Regulatory T-cell Responses in Tumors by Inducing Vitamin A Metabolism in Dendritic Cells
Authors: Hong Yuan , Manoharan Indumathi , Suryawanshi Amol , Majumdar Tanmay , Angus-Hill Melinda L. , Koni Pandelakis A. , Manicassamy Balaji , Mellor Andrew L. , Munn David H. , Manicassamy Santhakumar
Published: March 2023

Supplementary Figure S4. Blocking β-catenin/TCF pathway enhances antitumor immunity against established EG7 and MO4 tumors.
Supplementary Figure S2 from β-Catenin Promotes Regulatory T-cell Responses in Tumors by Inducing Vitamin A Metabolism in Dendritic Cells
Authors: Hong Yuan , Manoharan Indumathi , Suryawanshi Amol , Majumdar Tanmay , Angus-Hill Melinda L. , Koni Pandelakis A. , Manicassamy Balaji , Mellor Andrew L. , Munn David H. , Manicassamy Santhakumar
Published: March 2023

Supplementary Figure S2. DCs express vitamin A-metabolizing enzymes in response to EG7 tumor.
Supplementary Tables S1-S5 from Keratin-17 Promotes p27KIP1 Nuclear Export and Degradation and Offers Potential Prognostic Utility
Authors: Escobar-Hoyos Luisa F. , Shah Ruchi , Roa-Peña Lucia , Vanner Elizabeth A. , Najafian Nilofar , Banach Anna , Nielsen Erik , Al-Khalil Ramsey , Akalin Ali , Talmage David , Shroyer Kenneth R.
Published: March 2023

Comparison between discovery- and validation-datasets (S1); Comparison between the hazard ratio and survival probability estimated for the discovery, validation and combined datasets on K17 as a prognostic marker in squamous cell carcinomas of the cervix (S2); Primers and probes used for qRT-PCR (S3); Primary antibodies used for western blotting (S4); Failure hazard for cervical cancer patients stratified by K17 status, p27KIP1 status, and combined status using a Cox proportional hazards model (S5).
Supplementary Figure Legend from β-Catenin Promotes Regulatory T-cell Responses in Tumors by Inducing Vitamin A Metabolism in Dendritic Cells
Authors: Hong Yuan , Manoharan Indumathi , Suryawanshi Amol , Majumdar Tanmay , Angus-Hill Melinda L. , Koni Pandelakis A. , Manicassamy Balaji , Mellor Andrew L. , Munn David H. , Manicassamy Santhakumar
Published: March 2023

Supplementary Figure Legend. Legend for Supplementary Figures S1-S5.
Supplementary Table 1 from PI3K–mTORC2 but not PI3K–mTORC1 Regulates Transcription of HIF2A/EPAS1 and Vascularization in Neuroblastoma
Authors: Mohlin Sofie , Hamidian Arash , von Stedingk Kristoffer , Bridges Esther , Wigerup Caroline , Bexell Daniel , Påhlman Sven
Published: March 2023

Supplementary Table 1. Antibodies used for western blotting.
Supplementary Figure 2 from PI3K–mTORC2 but not PI3K–mTORC1 Regulates Transcription of HIF2A/EPAS1 and Vascularization in Neuroblastoma
Authors: Mohlin Sofie , Hamidian Arash , von Stedingk Kristoffer , Bridges Esther , Wigerup Caroline , Bexell Daniel , Påhlman Sven
Published: March 2023

Supplementary Figure 2. Hypoxia increases Akt activity in neuroblastoma cells.
Supplementary Figure 5 from Nivolumab and Urelumab Enhance Antitumor Activity of Human T Lymphocytes Engrafted in Rag2−/−IL2Rγnull Immunodeficient Mice
Authors: Sanmamed Miguel F. , Rodriguez Inmaculada , Schalper Kurt A. , Oñate Carmen , Azpilikueta Arantza , Rodriguez-Ruiz Maria E. , Morales-Kastresana Aizea , Labiano Sara , Pérez-Gracia Jose L. , Martín-Algarra Salvador , Alfaro Carlos , Mazzolini Guillermo , Sarno Francesca , Hidalgo Manuel , Korman Alan J. , Jure-Kunkel Maria , Melero Ignacio
Published: March 2023

xGVHD and human IFN-Î³ elevation in plasma are dependent on human CD4 T cells.
Supplementary Figure Legends from Radiotherapy Combined with Novel STING-Targeting Oligonucleotides Results in Regression of Established Tumors
Authors: Baird Jason R. , Friedman David , Cottam Benjamin , Dubensky Thomas W. , Kanne David B. , Bambina Shelly , Bahjat Keith , Crittenden Marka R. , Gough Michael J.
Published: March 2023

Supplementary Figure Legends
Supplementary Figure 10 from Nivolumab and Urelumab Enhance Antitumor Activity of Human T Lymphocytes Engrafted in Rag2−/−IL2Rγnull Immunodeficient Mice
Authors: Sanmamed Miguel F. , Rodriguez Inmaculada , Schalper Kurt A. , Oñate Carmen , Azpilikueta Arantza , Rodriguez-Ruiz Maria E. , Morales-Kastresana Aizea , Labiano Sara , Pérez-Gracia Jose L. , Martín-Algarra Salvador , Alfaro Carlos , Mazzolini Guillermo , Sarno Francesca , Hidalgo Manuel , Korman Alan J. , Jure-Kunkel Maria , Melero Ignacio
Published: March 2023

Anti-hCD137 (Urelumab) and anti-hPD-1 (Nivolumab) treatment as single agents or in combination show antitumor effects against a xenografted human gastric cancer transferred with autologous lymphocytes drawn from the same patient.
Figure S3 from Radiotherapy Combined with Novel STING-Targeting Oligonucleotides Results in Regression of Established Tumors
Authors: Baird Jason R. , Friedman David , Cottam Benjamin , Dubensky Thomas W. , Kanne David B. , Bambina Shelly , Bahjat Keith , Crittenden Marka R. , Gough Michael J.
Published: March 2023

Figure S3. RR-CDG causes rapid vascular and macrophage reorganization in the tumor
Figure S2 from Radiotherapy Combined with Novel STING-Targeting Oligonucleotides Results in Regression of Established Tumors
Authors: Baird Jason R. , Friedman David , Cottam Benjamin , Dubensky Thomas W. , Kanne David B. , Bambina Shelly , Bahjat Keith , Crittenden Marka R. , Gough Michael J.
Published: March 2023

Figure S2. Role of T cells in local control by RR-CDG alone
supplementary material and method from Genetic Events That Limit the Efficacy of MEK and RTK Inhibitor Therapies in a Mouse Model of KRAS-Driven Pancreatic Cancer
Authors: Pettazzoni Piergiorgio , Viale Andrea , Shah Parantu , Carugo Alessandro , Ying Haoqiang , Wang Huamin , Genovese Giannicola , Seth Sahil , Minelli Rosalba , Green Tessa , Huang-Hobbs Emmet , Corti Denise , Sanchez Nora , Nezi Luigi , Marchesini Matteo , Kapoor Avnish , Yao Wantong , Francesco Maria E. Di , Petrocchi Alessia , Deem Angela K. , Scott Kenneth , Colla Simona , Mills Gordon B. , Fleming Jason B. , Heffernan Timothy P. , Jones Philip , Toniatti Carlo , DePinho Ronald A. , Draetta Giulio F.
Published: March 2023

supplementary material and method
Supplementary Methods and Materials from Establishment and Characterization of a Cell Line from Human Circulating Colon Cancer Cells
Authors: Cayrefourcq Laure , Mazard Thibault , Joosse Simon , Solassol Jérôme , Ramos Jeanne , Assenat Eric , Schumacher Udo , Costes Valérie , Maudelonde Thierry , Pantel Klaus , Alix-Panabières Catherine
Published: March 2023

Supplementary Methods and Materials
Supplemental Figure S3 from Obesity Contributes to Ovarian Cancer Metastatic Success through Increased Lipogenesis, Enhanced Vascularity, and Decreased Infiltration of M1 Macrophages
Authors: Liu Yueying , Metzinger Matthew N. , Lewellen Kyle A. , Cripps Stephanie N. , Carey Kyle D. , Harper Elizabeth I. , Shi Zonggao , Tarwater Laura , Grisoli Annie , Lee Eric , Slusarz Ania , Yang Jing , Loughran Elizabeth A. , Conley Kaitlyn , Johnson Jeff J. , Klymenko Yuliya , Bruney Lana , Liang Zhong , Dovichi Norman J. , Cheatham Bentley , Leevy W. Matthew , Stack M. Sharon
Published: March 2023

Representative histology of Cohort 3 metastatic implants in wild type control or ob/ob mice.
Supplemental Figure Legends from Obesity Contributes to Ovarian Cancer Metastatic Success through Increased Lipogenesis, Enhanced Vascularity, and Decreased Infiltration of M1 Macrophages
Authors: Liu Yueying , Metzinger Matthew N. , Lewellen Kyle A. , Cripps Stephanie N. , Carey Kyle D. , Harper Elizabeth I. , Shi Zonggao , Tarwater Laura , Grisoli Annie , Lee Eric , Slusarz Ania , Yang Jing , Loughran Elizabeth A. , Conley Kaitlyn , Johnson Jeff J. , Klymenko Yuliya , Bruney Lana , Liang Zhong , Dovichi Norman J. , Cheatham Bentley , Leevy W. Matthew , Stack M. Sharon
Published: March 2023

Legends for Supplemental Figures S1-S4
Supplementary Figure S6 from Genetic and Pharmacologic Inhibition of eIF4E Reduces Breast Cancer Cell Migration, Invasion, and Metastasis
Authors: Pettersson Filippa , del Rincon Sonia V. , Emond Audrey , Huor Bonnie , Ngan Elaine , Ng Jonathan , Dobocan Monica C. , Siegel Peter M. , Miller Wilson H.
Published: March 2023

Supplementary Figure S6. Ribavirin suppresses the expression of mesenchymal markers vimentin and fibronectin and increases the expression of ZO-1.
Supplemental Table 4 from Host Age Is a Systemic Regulator of Gene Expression Impacting Cancer Progression
Authors: Beheshti Afshin , Benzekry Sébastien , McDonald J. Tyson , Ma Lili , Peluso Michael , Hahnfeldt Philip , Hlatky Lynn
Published: March 2023

Supplemental Table 4. Eighteen key genes involved in age-dependent tumor progression
Supplemental Methods from Host Age Is a Systemic Regulator of Gene Expression Impacting Cancer Progression
Authors: Beheshti Afshin , Benzekry Sébastien , McDonald J. Tyson , Ma Lili , Peluso Michael , Hahnfeldt Philip , Hlatky Lynn
Published: March 2023

Supplemental methods
Supplementary Figures S1-S4 from RARγ Downregulation Contributes to Colorectal Tumorigenesis and Metastasis by Derepressing the Hippo–Yap Pathway
Authors: Guo Peng-Da , Lu Xing-Xing , Gan Wen-Juan , Li Xiu-Ming , He Xiao-Shun , Zhang Shen , Ji Qing-Hua , Zhou Feng , Cao Yue , Wang Jing-Ru , Li Jian-Ming , Wu Hua
Published: March 2023

The degree of RARγ depletion in CRC cells (S1);Knockdown of RARγ enhances CRC cell proliferation (S2); Overexpression of RARγ inhibits CRC growth and metastasis in vitro and in vivo(S3); Cytoplasmic RARγ colocalizes with Yap in CRC cells (S4).
Supplementary Figure Legends from RARγ Downregulation Contributes to Colorectal Tumorigenesis and Metastasis by Derepressing the Hippo–Yap Pathway
Authors: Guo Peng-Da , Lu Xing-Xing , Gan Wen-Juan , Li Xiu-Ming , He Xiao-Shun , Zhang Shen , Ji Qing-Hua , Zhou Feng , Cao Yue , Wang Jing-Ru , Li Jian-Ming , Wu Hua
Published: March 2023

Legends for Supplementary Figures S1-S4
Supplementary Figure S1 from PI3K/mTOR Dual Inhibitor VS-5584 Preferentially Targets Cancer Stem Cells
Authors: Kolev Vihren N. , Wright Quentin G. , Vidal Christian M. , Ring Jennifer E. , Shapiro Irina M. , Ricono Jill , Weaver David T. , Padval Mahesh V. , Pachter Jonathan A. , Xu Qunli
Published: March 2023

Supplementary Figure S1. Aldefluor+ SUM159 breast cancer cells show enriched CSCs and tumor initiating-capability
Supplemental Figure Legends from Preclinical Validation of the Utility of BLZ-100 in Providing Fluorescence Contrast for Imaging Spontaneous Solid Tumors
Authors: Fidel Janean , Kennedy Katie C. , Dernell William S. , Hansen Stacey , Wiss Valorie , Stroud Mark R. , Molho Joshua I. , Knoblaugh Sue E. , Meganck Jeffrey , Olson James M. , Rice Brad , Parrish-Novak Julia
Published: March 2023

Figure legends to accompany Supplemental Figure S1 and Supplemental Figure S2
Supplementary Movie 3 from Emergence of Drug Tolerance in Cancer Cell Populations: An Evolutionary Outcome of Selection, Nongenetic Instability, and Stress-Induced Adaptation
Authors: Chisholm Rebecca H. , Lorenzi Tommaso , Lorz Alexander , Larsen Annette K. , Almeida Luís Neves de , Escargueil Alexandre , Clairambault Jean
Published: March 2023

Supplementary Movie 3. The cell population moving through the phenotype space during one simulation of the individual-based model. In this case there are no DTPs present in the initial population, only PC9 cells. Individual cells are shown as blue circles, whereas the population mean phenotype is shown as a dotted magenta line. The movie shows that the population dies out before the DTPs can stabilize.
Supplementary Movie 2 from Emergence of Drug Tolerance in Cancer Cell Populations: An Evolutionary Outcome of Selection, Nongenetic Instability, and Stress-Induced Adaptation
Authors: Chisholm Rebecca H. , Lorenzi Tommaso , Lorz Alexander , Larsen Annette K. , Almeida Luís Neves de , Escargueil Alexandre , Clairambault Jean
Published: March 2023

Supplementary Movie 2. The cell population moving through the phenotype space during one simulation of the individual-based model. In this case there are no DTPs present in the initial population, only PC9 cells. Individual cells are shown as blue circles, whereas the population mean phenotype is shown as a dotted magenta line. The movie shows that the PC9 population survives to become DTPs and then DTEPs.
Supplementary Figure 8 from Disrupting Hypoxia-Induced Bicarbonate Transport Acidifies Tumor Cells and Suppresses Tumor Growth
Authors: McIntyre Alan , Hulikova Alzbeta , Ledaki Ioanna , Snell Cameron , Singleton Dean , Steers Graham , Seden Peter , Jones Dylan , Bridges Esther , Wigfield Simon , Li Ji-Liang , Russell Angela , Swietach Pawel , Harris Adrian L.
Published: March 2023

NDBT inhibition or knockdown increases the intracellular pH gradients, and doxycycline does not reduce the growth of U87 shCTL xenografts.
Supplementary Figure 4A from Maspin Expression in Prostate Tumor Cells Averts Stemness and Stratifies Drug Sensitivity
Authors: Bernardo M. Margarida , Kaplun Alexander , Dzinic Sijana H. , Li Xiaohua , Irish Jonathan , Mujagic Adelina , Jakupovic Benjamin , Back Jessica B. , Van Buren Eric , Han Xiang , Dean Ivory , Chen Yong Q. , Heath Elisabeth , Sakr Wael , Sheng Shijie
Published: March 2023

Supplementary Figure 4A - Maspin shows no microenvironment dependent effect on prostate cancer cell sensitivity to Rapamycin
Supplementary Tables S1-S11 from UV-Associated Mutations Underlie the Etiology of MCV-Negative Merkel Cell Carcinomas
Authors: Wong Stephen Q. , Waldeck Kelly , Vergara Ismael A. , Schröder Jan , Madore Jason , Wilmott James S. , Colebatch Andrew J. , De Paoli-Iseppi Ricardo , Li Jason , Lupat Richard , Semple Timothy , Arnau Gisela Mir , Fellowes Andrew , Leonard J. Helen , Hruby George , Mann Graham J. , Thompson John F. , Cullinane Carleen , Johnston Meredith , Shackleton Mark , Sandhu Shahneen , Bowtell David D.L. , Johnstone Ricky W. , Fox Stephen B. , McArthur Grant A. , Papenfuss Anthony T. , Scolyer Richard A. , Gill Anthony J. , Hicks Rodney J. , Tothill Richard W.
Published: March 2023

MCC Patient characteristics (S1); Extension cohort of MCCs (S2); List of genes represented on the targeted sequencing panel (S3); Performance metrics for targeted sequencing and low coverage WGS (S4); Validation of mutations by orthogonal genotyping methods (S5); Immunohistochemistry scores for MCCs (S6); SNV and Indels called from targeted sequencing (S7); Mutational burden with respect to copy number changes through low coverage whole genome sequencing (S8); Gene level copy-number from LC-WGS (S9); Copies and viral integration sites for MCV positive MCCs (S10); Drug sensitivity data for 3 MCC cell lines (S11).
Supplementary Figure S1 from Radiation Sensitivity in a Preclinical Mouse Model of Medulloblastoma Relies on the Function of the Intrinsic Apoptotic Pathway
Authors: Crowther Andrew J. , Ocasio Jennifer K. , Fang Fang , Meidinger Jessica , Wu Jaclyn , Deal Allison M. , Chang Sha X. , Yuan Hong , Schmid Ralf , Davis Ian , Gershon Timothy R.
Published: March 2023

Additional histological studies.
Supplemental Figure 1 from Membrane IL1α Inhibits the Development of Hepatocellular Carcinoma via Promoting T- and NK-cell Activation
Authors: Lin Dandan , Lei Lei , Liu Yonghao , Zhang Yinsheng , Hu Bo , Bao Guangming , Song Yuan , Jin Ziqi , Liu Chunliang , Mei Yu , Sandikin Dedy , Wu Yan , Zhao Lixiang , Yu Xiao , Liu Haiyan
Published: March 2023

Supplemental Figure 1 IL-1R1 expression and tumor-specific activation of T cells in vitro.
Figure S1 from Disseminated Tumor Cells Persist in the Bone Marrow of Breast Cancer Patients through Sustained Activation of the Unfolded Protein Response
Authors: Bartkowiak Kai , Kwiatkowski Marcel , Buck Friedrich , Gorges Tobias M. , Nilse Lars , Assmann Volker , Andreas Antje , Müller Volkmar , Wikman Harriet , Riethdorf Sabine , Schlüter Hartmut , Pantel Klaus
Published: March 2023

Immunofluorescence and western blot analyses; Grp78va in DTC
Supplemental Figure Legends from Glioblastomas Require Integrin αvβ3/PAK4 Signaling to Escape Senescence
Authors: Franovic Aleksandra , Elliott Kathryn C. , Seguin Laetitia , Camargo M. Fernanda , Weis Sara M. , Cheresh David A.
Published: March 2023

Supplemental Figure Legends
Supplementary Table S4 from PDGF Engages an E2F-USP1 Signaling Pathway to Support ID2-Mediated Survival of Proneural Glioma Cells
Authors: Rahme Gilbert J. , Zhang Zhonghua , Young Alison L. , Cheng Chao , Bivona Eric J. , Fiering Steven N. , Hitoshi Yasuyuki , Israel Mark A.
Published: March 2023

Microarray data (Log2) of primary tumors and GSCs derived from the PDGF-driven glioma mouse model studied.
Supplementary Methods from Copy Number Alterations in Enzyme-Coding and Cancer-Causing Genes Reprogram Tumor Metabolism
Authors: Sharma Ashwini Kumar , Eils Roland , König Rainer
Published: March 2023

Contains additional technical details on the assembly of various datasets and mathematical details on mutual information,the iMetCG pipeline, construction of the metabolic network and permutation analysis.
Supplementary Figure S3 from CYP3A5 Functions as a Tumor Suppressor in Hepatocellular Carcinoma by Regulating mTORC2/Akt Signaling
Authors: Jiang Feng , Chen Lei , Yang Ying-Cheng , Wang Xian-ming , Wang Ruo-Yu , Li Liang , Wen Wen , Chang Yan-Xin , Chen Cai-Yang , Tang Jing , Liu Gao-Mi-Yang , Huang Wen-Tao , Xu Lin , Wang Hong-Yang
Published: March 2023

Supplementary Figure S3: The effect of CYP3A5 on cell proliferation
Supplementary Fig S1-S8 from The Deubiquitinase USP9X Maintains DNA Replication Fork Stability and DNA Damage Checkpoint Responses by Regulating CLASPIN during S-Phase
Authors: McGarry Edel , Gaboriau David , Rainey Michael D. , Restuccia Umberto , Bachi Angela , Santocanale Corrado
Published: March 2023

Supplementary Fig S1-S8.
Supplementary Figure S2 from CYP3A5 Functions as a Tumor Suppressor in Hepatocellular Carcinoma by Regulating mTORC2/Akt Signaling
Authors: Jiang Feng , Chen Lei , Yang Ying-Cheng , Wang Xian-ming , Wang Ruo-Yu , Li Liang , Wen Wen , Chang Yan-Xin , Chen Cai-Yang , Tang Jing , Liu Gao-Mi-Yang , Huang Wen-Tao , Xu Lin , Wang Hong-Yang
Published: March 2023

Supplementary Figure S2: Immunohistochemical staining of CYP3A5 in HCC tissue microarray
Supplementary Table S1 from Effects of Anticancer Drugs on Chromosome Instability and New Clinical Implications for Tumor-Suppressing Therapies
Authors: Lee Hee-Sheung , Lee Nicholas C.O. , Kouprina Natalay , Kim Jung-Hyun , Kagansky Alex , Bates Susan , Trepel Jane B. , Pommier Yves , Sackett Dan , Larionov Vladimir
Published: March 2023

Concentrations of all drugs used in this study.
Supplementary Tables S1-S9 from Dicer Elicits Paclitaxel Chemosensitization and Suppresses Cancer Stemness in Breast Cancer by Repressing AXL
Authors: Chang Ting-Yu , Chen Hsin-An , Chiu Ching-Feng , Chang Yi-Wen , Kuo Tsang-Chih , Tseng Po-Chun , Wang Weu , Hung Mien-Chie , Su Jen-Liang
Published: March 2023

Association between stem cell markers and Dicer expression in breast cancer datasets (S1); Clinicopathological features, clinical outcomes and their association with Dicer expression in breast cancer datasets (S2); Association between stem cell markers and AXL expression in breast cancer datasets (S3); Association between Dicer, AXL, C/EBPα and MAPK14 expression in breast cancer datasets (S4); Association between stem cell markers and C/EBPα expression in breast cancer datasets (S5); Association between AXL, C/EBPα and MAPK14 expression in breast cancer datasets (S6); Association between C/EBPα and MAPK14 expression in breast cancer datasets (S7); Association between stem cell markers and MAPK14 expression in breast cancer datasets (S8); Sequences and information of PCR primers for microRNA (miR), ChIP and cloning (S9).
Supplementary Methods and References from RANK Signaling Blockade Reduces Breast Cancer Recurrence by Inducing Tumor Cell Differentiation
Authors: Yoldi Guillermo , Pellegrini Pasquale , Trinidad Eva M. , Cordero Alex , Gomez-Miragaya Jorge , Serra-Musach Jordi , Dougall William C. , Muñoz Purificación , Pujana Miguel-Angel , Planelles Lourdes , González-Suárez Eva
Published: March 2023

Description of additional methods and procedures used in the study. Also includes Supplementary References.
Supplementary Figure S2 from RANK Signaling Blockade Reduces Breast Cancer Recurrence by Inducing Tumor Cell Differentiation
Authors: Yoldi Guillermo , Pellegrini Pasquale , Trinidad Eva M. , Cordero Alex , Gomez-Miragaya Jorge , Serra-Musach Jordi , Dougall William C. , Muñoz Purificación , Pujana Miguel-Angel , Planelles Lourdes , González-Suárez Eva
Published: March 2023

FACS gating scheme
Supplementary Table S1 from Novel Morphologic and Genetic Analysis of Cancer Cells in a 3D Microenvironment Identifies STAT3 as a Regulator of Tumor Permeability Barrier Function
Authors: Park Min Chul , Jeong Hyobin , Son Sung Hwa , Kim YounHa , Han Daeyoung , Goughnour Peter C. , Kang Taehee , Kwon Nam Hoon , Moon Hyo Eun , Paek Sun Ha , Hwang Daehee , Seol Ho Jun , Nam Do-Hyun , Kim Sunghoon
Published: March 2023

Summary of cancer cell lines and their spheroid morphology
Supplemental Figure 3 from Endoplasmic Reticulum Stress Protein GRP78 Modulates Lipid Metabolism to Control Drug Sensitivity and Antitumor Immunity in Breast Cancer
Authors: Cook Katherine L. , Soto-Pantoja David R. , Clarke Pamela A.G. , Cruz M. Idalia , Zwart Alan , Wärri Anni , Hilakivi-Clarke Leena , Roberts David D. , Clarke Robert
Published: March 2023

RT-PCR gene expression of SCD1 (A), FASN (B), ACC (C), and CPT1A (D) was measured in LCC1 and LCC9 breast cancer cells transfected with control or GRP78 siRNA for 72 hours and normalized with HRPT housekeeping gene expression. n=3; *p<0.01 E. SCAP protein expression in LCC1 and LCC9 breast cancer cells transfected with control or GRP78 siRNA. n=4; *p<0.03.
Supplementary Table S2 from Identification of Patients with Recurrent Glioblastoma Who May Benefit from Combined Bevacizumab and CCNU Therapy: A Report from the BELOB Trial
Authors: Erdem-Eraslan Lale , van den Bent Martin J. , Hoogstrate Youri , Naz-Khan Hina , Stubbs Andrew , van der Spek Peter , Böttcher René , Gao Ya , de Wit Maurice , Taal Walter , Oosterkamp Hendrika M. , Walenkamp Annemiek , Beerepoot Laurens V. , Hanse Monique C.J. , Buter Jan , Honkoop Aafke H. , van der Holt Bronno , Vernhout René M. , Smitt Peter A.E. Sillevis , Kros Johan M. , French Pim J.
Published: March 2023

Correlation in sample assignment between DASL and RNA-seq.
Supplementary Figure S8 from Identification of Patients with Recurrent Glioblastoma Who May Benefit from Combined Bevacizumab and CCNU Therapy: A Report from the BELOB Trial
Authors: Erdem-Eraslan Lale , van den Bent Martin J. , Hoogstrate Youri , Naz-Khan Hina , Stubbs Andrew , van der Spek Peter , Böttcher René , Gao Ya , de Wit Maurice , Taal Walter , Oosterkamp Hendrika M. , Walenkamp Annemiek , Beerepoot Laurens V. , Hanse Monique C.J. , Buter Jan , Honkoop Aafke H. , van der Holt Bronno , Vernhout René M. , Smitt Peter A.E. Sillevis , Kros Johan M. , French Pim J.
Published: March 2023

Expression of FMO4 (left panel) and OSBPL3 (right panel) by molecular subtype.
Supplemental Figure S6 from Guidance Molecule SEMA3A Restricts Tumor Growth by Differentially Regulating the Proliferation of Tumor-Associated Macrophages
Authors: Wallerius Majken , Wallmann Tatjana , Bartish Margarita , Östling Jeanette , Mezheyeuski Artur , Tobin Nicholas P. , Nygren Emma , Pangigadde Pradeepa , Pellegrini Paola , Squadrito Mario Leonardo , Pontén Fredrik , Hartman Johan , Bergh Jonas , De Milito Angelo , De Palma Michele , Östman Arne , Andersson John , Rolny Charlotte
Published: March 2023

NP1 EXPRESSION IS INCREASED IN M2-MÏ†.
Supplemental Figure S1 from Guidance Molecule SEMA3A Restricts Tumor Growth by Differentially Regulating the Proliferation of Tumor-Associated Macrophages
Authors: Wallerius Majken , Wallmann Tatjana , Bartish Margarita , Östling Jeanette , Mezheyeuski Artur , Tobin Nicholas P. , Nygren Emma , Pangigadde Pradeepa , Pellegrini Paola , Squadrito Mario Leonardo , Pontén Fredrik , Hartman Johan , Bergh Jonas , De Milito Angelo , De Palma Michele , Östman Arne , Andersson John , Rolny Charlotte
Published: March 2023

SEMA3A DOES NOT AFFECT TUMOR CELL METABOLISM.
Supplemental Figure Legends from Guidance Molecule SEMA3A Restricts Tumor Growth by Differentially Regulating the Proliferation of Tumor-Associated Macrophages
Authors: Wallerius Majken , Wallmann Tatjana , Bartish Margarita , Östling Jeanette , Mezheyeuski Artur , Tobin Nicholas P. , Nygren Emma , Pangigadde Pradeepa , Pellegrini Paola , Squadrito Mario Leonardo , Pontén Fredrik , Hartman Johan , Bergh Jonas , De Milito Angelo , De Palma Michele , Östman Arne , Andersson John , Rolny Charlotte
Published: March 2023

Legend for Supplemental Figures S1-S6.
Supplementary Figure S7 from Obesity-Induced Colorectal Cancer Is Driven by Caloric Silencing of the Guanylin–GUCY2C Paracrine Signaling Axis
Authors: Lin Jieru E. , Colon-Gonzalez Francheska , Blomain Erik , Kim Gilbert W. , Aing Amanda , Stoecker Brian , Rock Justin , Snook Adam E. , Zhan Tingting , Hyslop Terry M. , Tomczak Michal , Blumberg Richard S. , Waldman Scott A.
Published: March 2023

Body weights and guanylin expression in C57BL/6 mice on a lean or high fat (HF) diet, or switched from a high fat to a lean diet (HF-Lean).
Supplementary Figure Legend from Obesity-Induced Colorectal Cancer Is Driven by Caloric Silencing of the Guanylin–GUCY2C Paracrine Signaling Axis
Authors: Lin Jieru E. , Colon-Gonzalez Francheska , Blomain Erik , Kim Gilbert W. , Aing Amanda , Stoecker Brian , Rock Justin , Snook Adam E. , Zhan Tingting , Hyslop Terry M. , Tomczak Michal , Blumberg Richard S. , Waldman Scott A.
Published: March 2023

Legend for Supplementary Figures S1-S7.
Supplementary figure legends from MFG-E8 Drives Melanoma Growth by Stimulating Mesenchymal Stromal Cell–Induced Angiogenesis and M2 Polarization of Tumor-Associated Macrophages
Authors: Yamada Kazuya , Uchiyama Akihiko , Uehara Akihito , Perera Buddhini , Ogino Sachiko , Yokoyama Yoko , Takeuchi Yuko , Udey Mark C. , Ishikawa Osamu , Motegi Sei-ichiro
Published: March 2023

This file contains the legends for the two supplementary figures.
Table S5 from Comparative Cistromics Reveals Genomic Cross-talk between FOXA1 and ERα in Tamoxifen-Associated Endometrial Carcinomas
Authors: Droog Marjolein , Nevedomskaya Ekaterina , Kim Yongsoo , Severson Tesa , Flach Koen D. , Opdam Mark , Schuurman Karianne , Gradowska Patrycja , Hauptmann Michael , Dackus Gwen , Hollema Harry , Mourits Marian J. , Nederlof Petra , van Boven Hester , Linn Sabine C. , Wessels Lodewyk , van Leeuwen Flora E. , Zwart Wilbert
Published: March 2023

Clinocopathological parameters of breast cancers used for ChIP-seq
Table S4 from Comparative Cistromics Reveals Genomic Cross-talk between FOXA1 and ERα in Tamoxifen-Associated Endometrial Carcinomas
Authors: Droog Marjolein , Nevedomskaya Ekaterina , Kim Yongsoo , Severson Tesa , Flach Koen D. , Opdam Mark , Schuurman Karianne , Gradowska Patrycja , Hauptmann Michael , Dackus Gwen , Hollema Harry , Mourits Marian J. , Nederlof Petra , van Boven Hester , Linn Sabine C. , Wessels Lodewyk , van Leeuwen Flora E. , Zwart Wilbert
Published: March 2023

Accession numbers of Ishikawa RNA-seq and ChIP-seq datasets generated by the ENCODE consortium and publicly available ERalpha ChIP-seq data from breast tumors.
Supplementary Figures S1-S5 from Treatment of Invasive Brain Tumors Using a Chain-like Nanoparticle
Authors: Peiris Pubudu M. , Abramowski Aaron , Mcginnity James , Doolittle Elizabeth , Toy Randall , Gopalakrishnan Ramamurthy , Shah Shruti , Bauer Lisa , Ghaghada Ketan B. , Hoimes Christopher , Brady-Kalnay Susann M. , Basilion James P. , Griswold Mark A. , Karathanasis Efstathios
Published: March 2023

Supplementary Fig. S1. Representative in vivo and ex vivo images using a Maestro FLEX In Vivo Imaging System. Supplementary Fig. S2. Effect of the RF field on the temperature of brain tissues. Supplementary Fig. S3. Bright field microscopy and fluorescence was performed on an entire histological section of the brain stained with Hematoxylin-Eosin (green: CNS-1 glioma cells (GFP)). The same histological section shown in Fig. 4A was used (left panel). Higher magnification of the same section shows the H&E stain of an invasive site (right panel). Supplementary Fig. S4. Cytotoxicity of nanochain particles on CNS-1 cells. Supplementary Fig. S5. Weight progression of animals bearing orthotopic (A) CNS-1 or (B) 9L glioma tumors after DOX treatments.
Supplementary Figure 1| Clonal Composition of ActinCreER2Rainbow Blood Vessels 180 and 270 days after Tamoxifen Administration from Dynamic Patterns of Clonal Evolution in Tumor Vasculature Underlie Alterations in Lymphocyte–Endothelial Recognition to Foster Tumor Immune Escape
Authors: Corey Daniel M. , Rinkevich Yuval , Weissman Irving L.
Published: March 2023

Clonal analysis results from 20 representative blood vessels 180 and 270 days after tamoxifen exposure show a uniform distribution in clonality within endothelium over the time period. We employed a Chi-squared test to evaluate the null hypothesis of equal distribution, which could not be rejected.
Supplementary materials and methods from Heme Oxygenase-1 Controls an HDAC4-miR-206 Pathway of Oxidative Stress in Rhabdomyosarcoma
Authors: Ciesla Maciej , Marona Paulina , Kozakowska Magdalena , Jez Mateusz , Seczynska Marta , Loboda Agnieszka , Bukowska-Strakova Karolina , Szade Agata , Walawender Magdalena , Kusior Magdalena , Stepniewski Jacek , Szade Krzysztof , Krist Bart , Yagensky Oleksandr , Urbanik Aleksandra , Kazanowska Bernarda , Dulak Jozef , Jozkowicz Alicja
Published: March 2023

Detailed description of methods used in the study with Supplementary Figures legends
Supplementary information from Tumor Cell Invasion Can Be Blocked by Modulators of Collagen Fibril Alignment That Control Assembly of the Extracellular Matrix
Authors: Grossman Moran , Ben-Chetrit Nir , Zhuravlev Alina , Afik Ran , Bassat Elad , Solomonov Inna , Yarden Yosef , Sagi Irit
Published: March 2023

This file contains: Fig S1-S10 Table S1-S2 Supplementary materials and methods
Supplemental Figures S1-S14 from Forced Activation of Notch in Macrophages Represses Tumor Growth by Upregulating miR-125a and Disabling Tumor-Associated Macrophages
Authors: Zhao Jun-Long , Huang Fei , He Fei , Gao Chun-Chen , Liang Shi-Qian , Ma Peng-Fei , Dong Guang-Ying , Han Hua , Qin Hong-Yan
Published: March 2023

Figure S1: Expression of Notch ligands and receptors in macrophages during in vitro differentiation and activation. Figure S2: Activation of Notch signaling in macrophages repressed the growth of transplanted B16F melanoma tumors. Figure S3: Activation of Notch signaling by conditional NIC expression in macrophages did not change the number of macrophages, but reduced the number of MDSCs and increased the number of CD8+ T-cells in transplanted tumors. Figure S4: miR-125a expression in BM cells and macrophages. Figure S5: miR-125a is a downstream molecule to Notch signaling in macrophages. Figure S6: Activation of Notch signaling with immobilized mD1R in macrophages promoted M1 polarization. Figure S7: Characterization of the miR-125a gene and its enhancer. Figure S8: The sequence of the first intron enhancer of Spaca6A. Figure S9: miR-125a enhanced phagocytosis of differentially activated macrophages. Figure S10: Notch signaling regulated M1 and M2 macrophage polarization. Figure S11: miR-125a regulated M1 macrophages through targeting FIH1. Figure S12: miR-125a repressed M2 macrophages through targeting IRF4. Figure S13: Self-amplification of miR-125a expression through RYBP/YY1. Figure S14: A model of the Notch signaling-mediated regulation of TAMs through miR-125a.
Table S1 from miR-214 and miR-148b Targeting Inhibits Dissemination of Melanoma and Breast Cancer
Authors: Orso Francesca , Quirico Lorena , Virga Federico , Penna Elisa , Dettori Daniela , Cimino Daniela , Coppo Roberto , Grassi Elena , Elia Angela Rita , Brusa Davide , Deaglio Silvia , Brizzi Maria Felice , Stadler Michael B. , Provero Paolo , Caselle Michele , Taverna Daniela
Published: March 2023

miR-214 and miR-148b sponge sequences
Supplementary from miR-214 and miR-148b Targeting Inhibits Dissemination of Melanoma and Breast Cancer
Authors: Orso Francesca , Quirico Lorena , Virga Federico , Penna Elisa , Dettori Daniela , Cimino Daniela , Coppo Roberto , Grassi Elena , Elia Angela Rita , Brusa Davide , Deaglio Silvia , Brizzi Maria Felice , Stadler Michael B. , Provero Paolo , Caselle Michele , Taverna Daniela
Published: March 2023

Supplementary tables and figure legends
Supplementary Information from PTP1B Deficiency Enables the Ability of a High-Fat Diet to Drive the Invasive Character of PTEN-Deficient Prostate Cancers
Authors: Labbé David P. , Uetani Noriko , Vinette Valérie , Lessard Laurent , Aubry Isabelle , Migon Eva , Sirois Jacinthe , Haigh Jody J. , Bégin Louis R. , Trotman Lloyd C. , Paquet Marilène , Tremblay Michel L.
Published: March 2023

Supplementary Materials and Methods, Supplementary Table, Supplementary References and Supplementary Figures S1 to S5
Figure S6 from miR-214 and miR-148b Targeting Inhibits Dissemination of Melanoma and Breast Cancer
Authors: Orso Francesca , Quirico Lorena , Virga Federico , Penna Elisa , Dettori Daniela , Cimino Daniela , Coppo Roberto , Grassi Elena , Elia Angela Rita , Brusa Davide , Deaglio Silvia , Brizzi Maria Felice , Stadler Michael B. , Provero Paolo , Caselle Michele , Taverna Daniela
Published: March 2023

miR-214 and miR-148b coordinate lung metastasis formation in an opposite manner
Supplemental Tables from CRM1 Inhibition Promotes Cytotoxicity in Ewing Sarcoma Cells by Repressing EWS-FLI1–Dependent IGF-1 Signaling
Authors: Sun Haibo , Lin De-Chen , Cao Qi , Guo Xiao , Marijon Helene , Zhao Zhiqiang , Gery Sigal , Xu Liang , Yang Henry , Pang Brendan , Lee Victor Kwan Min , Lim Huey Jin , Doan Ngan , Said Jonathan W. , Chu Peiguo , Mayakonda Anand , Thomas Tom , Forscher Charles , Baloglu Erkan , Shacham Sharon , Rajalingam Raja , Koeffler H. Phillip
Published: March 2023

Table S1. qRT-PCR primers. Table S2. CRM1 expression among different cancer types patient sample tissues. Table S3. CRM1 Expression among different cancer types ( cancer cell lines from CCLE database). Table S4. patients clinical infomation and h score sorting. Table S5. Overlaps of lists of genes in EW8 and SKES1 under treatment with KPT-330. Table S6. Overlaps of lists of genes by KPT-330 and EWS-FLI1 regulation.
Figure S5 from miR-214 and miR-148b Targeting Inhibits Dissemination of Melanoma and Breast Cancer
Authors: Orso Francesca , Quirico Lorena , Virga Federico , Penna Elisa , Dettori Daniela , Cimino Daniela , Coppo Roberto , Grassi Elena , Elia Angela Rita , Brusa Davide , Deaglio Silvia , Brizzi Maria Felice , Stadler Michael B. , Provero Paolo , Caselle Michele , Taverna Daniela
Published: March 2023

miR-148b expression modulations in normal or tumor breast cells
Supplementary Figure Legends from Lack of p53 Augments Antitumor Functions in Cytolytic T Cells
Authors: Banerjee Anirban , Thyagarajan Krishnamurthy , Chatterjee Shilpak , Chakraborty Paramita , Kesarwani Pravin , Soloshchenko Myroslawa , Al-Hommrani Mazen , Andrijauskaite Kristina , Moxley Kelly , Janakiraman Harinarayanan , Scheffel Matthew J. , Helke Kristi , Armenson Kent , Palanisamy Viswanathan , Rubinstein Mark P. , Mayer Elizabeth-Garrett , Cole David J. , Paulos Chrystal M. , Voelkel-Johnson Christina , Nishimura Michael I. , Mehrotra Shikhar
Published: March 2023

Details for comparative characterization of the phenotype, and anti-tumor function of p53-KO vs Wt T cells is included.
Supplementary Figure S6 from miR-1298 Inhibits Mutant KRAS-Driven Tumor Growth by Repressing FAK and LAMB3
Authors: Zhou Ying , Dang Jason , Chang Kung-Yen , Yau Edwin , Aza-Blanc Pedro , Moscat Jorge , Rana Tariq M.
Published: March 2023

Testing of Individual LAMB3 and FAK siRNAs Rule Out Off-Target Effects.
Supplementary Figure S3 from miR-1298 Inhibits Mutant KRAS-Driven Tumor Growth by Repressing FAK and LAMB3
Authors: Zhou Ying , Dang Jason , Chang Kung-Yen , Yau Edwin , Aza-Blanc Pedro , Moscat Jorge , Rana Tariq M.
Published: March 2023

miR-1298 expression is lower in KRASMUT NSCLC cell lines but not dependent on mutant KRAS expression.
Supplementary Figure S2 from miR-1298 Inhibits Mutant KRAS-Driven Tumor Growth by Repressing FAK and LAMB3
Authors: Zhou Ying , Dang Jason , Chang Kung-Yen , Yau Edwin , Aza-Blanc Pedro , Moscat Jorge , Rana Tariq M.
Published: March 2023

Mutation Background of Non-Small Cell Lung Cancer Lines.
Supplementary Tables S1-S4 from Dual Targeting of CDK4 and ARK5 Using a Novel Kinase Inhibitor ON123300 Exerts Potent Anticancer Activity against Multiple Myeloma
Authors: Perumal Deepak , Kuo Pei-Yu , Leshchenko Violetta V. , Jiang Zewei , Divakar Sai Krishna Athaluri , Cho Hearn Jay , Chari Ajai , Brody Joshua , Reddy M.V. Ramana , Zhang Weijia , Reddy E. Premkumar , Jagannath Sundar , Parekh Samir
Published: March 2023

Kinase Inhibition Profile of ON123300 and PD0332991 (S1); Top 10 significantly enriched pathways for the 894 differentially regulated genes from NCI-H929 siRNA RNA sequencing analysis (S2); Top 10 significantly enriched pathways for the 180 differentially regulated genes between ON123300 and resistant cell lines (S3); Top 10 significantly downregulated pathways for the 180 differentially regulated genes between ON123300 and resistant cell lines (S4).
Supplementary Figure Legends from Tissue Factor Induced by Epithelial–Mesenchymal Transition Triggers a Procoagulant State That Drives Metastasis of Circulating Tumor Cells
Authors: Bourcy Morgane , Suarez-Carmona Meggy , Lambert Justine , Francart Marie-Emilie , Schroeder Hélène , Delierneux Céline , Skrypek Nicolas , Thompson Erik W. , Jérusalem Guy , Berx Geert , Thiry Marc , Blacher Silvia , Hollier Brett G. , Noël Agnès , Oury Cécile , Polette Myriam , Gilles Christine
Published: March 2023

Supplementary Figure Legends
Supplementary Figure S4 from Small-Molecule Prodigiosin Restores p53 Tumor Suppressor Activity in Chemoresistant Colorectal Cancer Stem Cells via c-Jun-Mediated ΔNp73 Inhibition and p73 Activation
Authors: Prabhu Varun V. , Hong Bo , Allen Joshua E. , Zhang Shengliang , Lulla Amriti R. , Dicker David T. , El-Deiry Wafik S.
Published: March 2023

Prodigiosin-mediated anti-CRCSC effect involves p53 pathway restoration via p73.
Supplementary Figure S2 from Small-Molecule Prodigiosin Restores p53 Tumor Suppressor Activity in Chemoresistant Colorectal Cancer Stem Cells via c-Jun-Mediated ΔNp73 Inhibition and p73 Activation
Authors: Prabhu Varun V. , Hong Bo , Allen Joshua E. , Zhang Shengliang , Lulla Amriti R. , Dicker David T. , El-Deiry Wafik S.
Published: March 2023

Prodigiosin targets CRCSC self-renewal in vivo.
Supplementary Material from A Small-Molecule Antagonist of the β-Catenin/TCF4 Interaction Blocks the Self-Renewal of Cancer Stem Cells and Suppresses Tumorigenesis
Authors: Fang Liang , Zhu Qionghua , Neuenschwander Martin , Specker Edgar , Wulf-Goldenberg Annika , Weis William I. , von Kries Jens P. , Birchmeier Walter
Published: March 2023

Portions of Materials and Methods and Supplementary Tables 1 and 2. Table S1: Primer sequences for ChIP experiment Table S2: Primer sequences for qRT-PCR
Supplementary Figure S6 from Loss of TGFβ Receptor Type 2 Expression Impairs Estrogen Response and Confers Tamoxifen Resistance
Authors: Busch Susann , Sims Andrew H. , Stål Olle , Fernö Mårten , Landberg Göran
Published: March 2023

Fulvestrant response in MCF7 with TGFBR2-specific knockdown.
Supplementary Table S2 from Hemolytic E. coli Promotes Colonic Tumorigenesis in Females
Authors: Jin Ye , Tang Senwei , Li Weilin , Ng Siew Chien , Chan Michael W.Y. , Sung Joseph J.Y. , Yu Jun
Published: March 2023

Virulence genes present in different types of E. coli isolates
Supplementary Figure Legends from AZD9496: An Oral Estrogen Receptor Inhibitor That Blocks the Growth of ER-Positive and ESR1-Mutant Breast Tumors in Preclinical Models
Authors: Weir Hazel M. , Bradbury Robert H. , Lawson Mandy , Rabow Alfred A. , Buttar David , Callis Rowena J. , Curwen Jon O. , de Almeida Camila , Ballard Peter , Hulse Michael , Donald Craig S. , Feron Lyman J.L. , Karoutchi Galith , MacFaul Philip , Moss Thomas , Norman Richard A. , Pearson Stuart E. , Tonge Michael , Davies Gareth , Walker Graeme E. , Wilson Zena , Rowlinson Rachel , Powell Steve , Sadler Claire , Richmond Graham , Ladd Brendon , Pazolli Ermira , Mazzola Anne Marie , D'Cruz Celina , De Savi Chris
Published: March 2023

Legends for Supplementary Figures 1 - 7.
CAN-15-1348R-Supplementary Figure legends from Injury-Driven Stiffening of the Dermis Expedites Skin Carcinoma Progression
Authors: Mittapalli Venugopal R. , Madl Josef , Löffek Stefanie , Kiritsi Dimitra , Kern Johannes S. , Römer Winfried , Nyström Alexander , Bruckner-Tuderman Leena
Published: March 2023

Supplementary Figure legends
Supplementary Figures S1-S5 from Transcriptome Analysis of Recurrently Deregulated Genes across Multiple Cancers Identifies New Pan-Cancer Biomarkers
Authors: Kaczkowski Bogumil , Tanaka Yuji , Kawaji Hideya , Sandelin Albin , Andersson Robin , Itoh Masayoshi , Lassmann Timo , Hayashizaki Yoshihide , Carninci Piero , Forrest Alistair R.R.
Published: March 2023

The expression changes of cancer related genes that were differentially expressed in FANTOM5 cancer cell lines (S1); Heatmaps showing the spectral count data corresponding to protein levels of selected genes in 90 colorectal cancers and 30 normal samples generated by Zhang et al (S2); Pan-cancer long non-coding RNAs and neighboring cancer associated genes (S3); ChIA-pet data show pan-cancer enhancers are physically associated with genes implicated in cancer (S4); The correlation between expression fold changes and the frequency of overlapping repetitive element (S5).
Supplemental Material and Methods from Dual Roles for CXCL4 Chemokines and CXCR3 in Angiogenesis and Invasion of Pancreatic Cancer
Authors: Quemener Cathy , Baud Jessica , Boyé Kevin , Dubrac Alexandre , Billottet Clotilde , Soulet Fabienne , Darlot Florence , Dumartin Laurent , Sire Marie , Grepin Renaud , Daubon Thomas , Rayne Fabienne , Wodrich Harald , Couvelard Anne , Pineau Raphael , Schilling Martin , Castronovo Vincent , Sue Shih-Che , Clarke Kim , Lomri Abderrahim , Khatib Abdel-Majid , Hagedorn Martin , Prats Hervé , Bikfalvi Andreas
Published: March 2023

Supplemental Material and Method section
Supplementary Figure S4 from Mutational Landscape and Antiproliferative Functions of ELF Transcription Factors in Human Cancer
Authors: Ando Mizuo , Kawazu Masahito , Ueno Toshihide , Koinuma Daizo , Ando Koji , Koya Junji , Kataoka Keisuke , Yasuda Takahiko , Yamaguchi Hiroyuki , Fukumura Kazutaka , Yamato Azusa , Soda Manabu , Sai Eirin , Yamashita Yoshihiro , Asakage Takahiro , Miyazaki Yasushi , Kurokawa Mineo , Miyazono Kohei , Nimer Stephen D. , Yamasoba Tatsuya , Mano Hiroyuki
Published: March 2023

Doxycycline-dependent expression of ELF4 in stably transduced T3M-1 Cl-10
Supplementary Figure S9 from Eva1 Maintains the Stem-like Character of Glioblastoma-Initiating Cells by Activating the Noncanonical NF-κB Signaling Pathway
Authors: Ohtsu Naoki , Nakatani Yuka , Yamashita Daisuke , Ohue Shiro , Ohnishi Takanori , Kondo Toru
Published: March 2023

Eva1+GBM cells associate with RORγT+ Th17 cells.
Supplementary Fig 6 from Neuropilin-2 Regulates Endosome Maturation and EGFR Trafficking to Support Cancer Cell Pathobiology
Authors: Dutta Samikshan , Roy Sohini , Polavaram Navatha S. , Stanton Marissa J. , Zhang Heyu , Bhola Tanvi , Hönscheid Pia , Donohue Terrence M. , Band Hamid , Batra Surinder K. , Muders Michael H. , Datta Kaustubh
Published: March 2023

Maturation of Cathepsin following depletion of NRP2 axis in Du145 and PC3 cells
Supplementary Fig 4 from Neuropilin-2 Regulates Endosome Maturation and EGFR Trafficking to Support Cancer Cell Pathobiology
Authors: Dutta Samikshan , Roy Sohini , Polavaram Navatha S. , Stanton Marissa J. , Zhang Heyu , Bhola Tanvi , Hönscheid Pia , Donohue Terrence M. , Band Hamid , Batra Surinder K. , Muders Michael H. , Datta Kaustubh
Published: March 2023

Analysis of early and late endosomal proteins
Supplementary Fig 3 from Neuropilin-2 Regulates Endosome Maturation and EGFR Trafficking to Support Cancer Cell Pathobiology
Authors: Dutta Samikshan , Roy Sohini , Polavaram Navatha S. , Stanton Marissa J. , Zhang Heyu , Bhola Tanvi , Hönscheid Pia , Donohue Terrence M. , Band Hamid , Batra Surinder K. , Muders Michael H. , Datta Kaustubh
Published: March 2023

Late endosomal protein Rab7 also affected following depletion of NRP2 or VEGF-C
Supplementary Figure S3 from Rapalogs Efficacy Relies on the Modulation of Antitumor T-cell Immunity
Authors: Beziaud Laurent , Mansi Laura , Ravel Patrice , Marie-Joseph Elodie Lauret , Laheurte Caroline , Rangan Laurie , Bonnefoy Francis , Pallandre Jean-René , Boullerot Laura , Gamonet Clémentine , Vrecko Sindy , Queiroz Lise , Maurina Tristan , Mouillet Guillaume , Hon Thierry Nguyen Tan , Curtit Elsa , Royer Bernard , Gaugler Béatrice , Bayry Jagadeesh , Tartour Eric , Thiery-Vuillemin Antoine , Pivot Xavier , Borg Christophe , Godet Yann , Adotévi Olivier
Published: March 2023

This file contains the antiviral response in patients: Supplementary figure 3
Supplemental material from The E3-ligase E6AP Represses Breast Cancer Metastasis via Regulation of ECT2-Rho Signaling
Authors: Mansour Mariam , Haupt Sue , Chan Ai-Leen , Godde Nathan , Rizzitelli Alexandra , Loi Sherene , Caramia Franco , Deb Siddhartha , Takano Elena A. , Bishton Mark , Johnstone Cameron , Monahan Brendon , Levav-Cohen Yarra , Jiang Yong-Hui , Yap Alpha S. , Fox Stephen , Bernard Ora , Anderson Robin , Haupt Ygal
Published: March 2023

Supplemental material