bluuebunny/crossref_metadata_2025 huggingface dataset:
Cell and molecular targeted therapies for diabetic retinopathy
Authors: Reddy Shivakumar K. , Devi Vasudha , Seetharaman Amritha T. M. , Shailaja S. , Bhat Kumar M. R. , Gangaraju Rajashekhar , Upadhya Dinesh
Published: June 2024

Diabetic retinopathy (DR) stands as a prevalent complication in the eye resulting from diabetes mellitus, predominantly associated with high blood sugar levels and hypertension as individuals age. DR is a severe microvascular complication of both type I and type II diabetes mellitus and the leading cause of vision impairment. The critical approach to combatting and halting the advancement of DR lies in effectively managing blood glucose and blood pressure levels in diabetic patients; however, this is seldom achieved. Both human and animal studies have revealed the intricate nature of this condition involving various cell types and molecules. Aside from photocoagulation, the sole therapy targeting VEGF molecules in the retina to prevent abnormal blood vessel growth is intravitreal anti-VEGF therapy. However, a substantial portion of cases, approximately 30–40%, do not respond to this treatment. This review explores distinctive pathophysiological phenomena of DR and identifiable cell types and molecules that could be targeted to mitigate the chronic changes occurring in the retina due to diabetes mellitus. Addressing the significant research gap in this domain is imperative to broaden the treatment options available for managing DR effectively.
Selection and application of China environmental sustainability policy instrumental: a quantitative analysis based on “Dual Carbon” policy text
Authors: Jing Zhai , Feng Hu
Published: June 2024

The “Dual Carbon” policy is a strategic instrument for the realization of the “Dual Carbon”target. The quantitative analysis of the “Dual Carbon” policy can provide theoretical support and decision-making reference for the institutional design and adjustment of the policy, so as to further improve the “Dual Carbon” 1 + N policy system. By constructing a three-dimensional analysis framework of “instrument-goal-object”, adopting the content analysis method, and combining the coding results of the “Dual Carbon” policy text to conduct multidimensional cross-analysis, we found that the overall design of the “Dual Carbon” policy is reasonable, but at the same time, there are problems such as unbalanced distribution of policy instruments, incomplete coverage of policy goals, insufficient synergy of policy objects, and low degree of matching between policy dimensions. In response to these problems, targeted mitigation measures are proposed.
Pathogenic variants in human DNA damage repair genes mostly arose after the latest human out-of-Africa migration
Authors: He Jun , Kou Si Hoi , Li Jiaheng , Ding Xiaofan , Wang San Ming
Published: June 2024

Introduction

The DNA damage repair (DDR) system in human genome is pivotal in maintaining genomic integrity. Pathogenic variation (PV) in DDR genes impairs their function, leading to genome instability and increased susceptibility to diseases, especially cancer. Understanding the evolution origin and arising time of DDR PV is crucial for comprehending disease susceptibility in modern humans.

Methods

We used big data approach to identify the PVs in DDR genes in modern humans. We mined multiple genomic databases derived from 251,214 modern humans of African and non-Africans. We compared the DDR PVs between African and non-African. We also mined the DDR PVs in the genomic data derived from 5,031 ancient humans. We used the DDR PVs from ancient humans as the intermediate to further the DDR PVs between African and non-African.

Results and discussion

We identified 1,060 single-base DDR PVs across 77 DDR genes in modern humans of African and non-African. Direct comparison of the DDR PVs between African and non-African showed that 82.1% of the non-African PVs were not present in African. We further identified 397 single-base DDR PVs in 56 DDR genes in the 5,031 ancient humans dated between 45,045 and 100 years before present (BP) lived in Eurasian continent therefore the descendants of the latest out-of-Africa human migrants occurred 50,000–60,000 years ago. By referring to the ancient DDR PVs, we observed that 276 of the 397 (70.3%) ancient DDR PVs were exclusive in non-African, 106 (26.7%) were shared between non-African and African, and only 15 (3.8%) were exclusive in African. We further validated the distribution pattern by testing the PVs in BRCA and TP53, two of the important genes in genome stability maintenance, in African, non-African, and Ancient humans. Our study revealed that DDR PVs in modern humans mostly emerged after the latest out-of-Africa migration. The data provides a foundation to understand the evolutionary basis of disease susceptibility, in particular cancer, in modern humans.
Identification and experimental validation of cuproptosis regulatory program in a sepsis immune microenvironment through a combination of single-cell and bulk RNA sequencing
Authors: Zhao Tingru , Guo Yan , Li Jin
Published: June 2024

Background

In spite of its high mortality rate and poor prognosis, the pathogenesis of sepsis is still incompletely understood. This study established a cuproptosis-based risk model to diagnose and predict the risk of sepsis. In addition, the cuproptosis-related genes were identified for targeted therapy.

Methods

Single-cell sequencing analyses were used to characterize the cuproptosis activity score (CuAS) and intercellular communications in sepsis. Differential cuproptosis-related genes (CRGs) were identified in conjunction with single-cell and bulk RNA sequencing. LASSO and Cox regression analyses were employed to develop a risk model. Three external cohorts were conducted to assess the model’s accuracy. Differences in immune infiltration, immune cell subtypes, pathway enrichment, and the expression of immunomodulators were further evaluated in distinct groups. Finally, various in-vitro experiments, such as flow cytometry, Western blot, and ELISA, were used to explore the role of LST1 in sepsis.

Results

ScRNA-seq analysis demonstrated that CuAS was highly enriched in monocytes and was closely related to the poor prognosis of sepsis patients. Patients with higher CuAS exhibited prominent strength and numbers of cell–cell interactions. A total of five CRGs were identified based on the LASSO and Cox regression analyses, and a CRG-based risk model was established. The lower riskScore cohort exhibited enhanced immune cell infiltration, elevated immune scores, and increased expression of immune modulators, indicating the activation of an antibacterial response. Ultimately, in-vitro experiments demonstrated that LST1, a key gene in the risk model, was enhanced in the macrophage in response to LPS, which was closely related to the decrease of macrophage survival rate, the enhancement of apoptosis and oxidative stress injury, and the imbalance of the M1/M2 phenotype.

Conclusions

This study constructed a cuproptosis-related risk model to accurately predict the prognosis of sepsis. We further characterized the cuproptosis-related gene LST1 to provide a theoretical framework for sepsis therapy.
Second bone marrow transplantation into regenerating hematopoiesis enhances reconstitution of immune system
Authors: Faltusová Kateřina , Báječný Martin , Heizer Tomáš , Páral Petr , Chen Chia-Ling , Szikszai Katarína , Klener Pavel , Nečas Emanuel
Published: June 2024

In bone marrow transplantation (BMT), hematopoiesis-reconstituting cells are introduced following myeloablative treatment, which eradicates existing hematopoietic cells and disrupts stroma within the hematopoietic tissue. Both hematopoietic cells and stroma then undergo regeneration. Our study compares the outcomes of a second BMT administered to mice shortly after myeloablative treatment and the first BMT, with those of a second BMT administered to mice experiencing robust hematopoietic regeneration after the initial transplant. We evaluated the efficacy of the second BMT in terms of engraftment efficiency, types of generated blood cells, and longevity of function. Our findings show that regenerating hematopoiesis readily accommodates newly transplanted stem cells, including those endowed with a robust capacity for generating B and T cells. Importantly, our investigation uncovered a window for preferential engraftment of transplanted stem cells coinciding with the resumption of blood cell production. Repeated BMT could intensify hematopoiesis reconstitution and enable therapeutic administration of genetically modified autologous stem cells.
Behavioral report of Chrysomya rufifacies in response to substrate infestation by Lucilia sericata and Lucilia cuprina using a tetrahedron olfactometer device
Authors: Fonseca-Muñoz Alicia , Hernández-Salinas Gregorio , Ordaz-Silva Salvador , López-Sánchez Imelda Virginia , Delgadillo-Ángeles Jorge Luis , Villanueva-Sánchez Evert , Villanueva-Verduzco Clemente , Gómez-Domínguez Nadia S. , Granados-Echegoyen Carlos
Published: June 2024

Calliphoridae are widespread globally and can inhabit a variety of habitats. In this brief report, we assessed the appeal of Chrysomya rufifacies to resources that were previously inhabited by Lucilia sericata and L. cuprina, both common carrion colonizers. Two hundred adult male and female (1:1) C. rufifacies were released under controlled conditions into clear plastic cages (45 x 45 x 45 cm) with four types of substrates: beef-liver; liver with 100 third-instar larvae of L. cuprina; (III) liver containing 100 third-instar larvae of L. sericata; and liver containing 100 third-instar larvae of C. rufifacies. Each substrate was left in place for 24 hours at the end of a tube connected to the cage, where sticky traps were positioned to capture flies that might have been attracted to a specific substrate. The results indicate variations in the attraction of flies to different types of livers colonized by larvae of various species. It is suggested that flies may have specific preferences depending on the species of larvae present in the substrate. The liver without larvae was the preferred choice, while beef liver with C. rufifacies larvae was the least attractive. Results of statistical tests indicated that there is independence between attractiveness preference and the presence of C. rufifacies flies. Although there is a trend among certain levels of the variables in the correspondence analysis, these relationships are not statistically significant. However, they indicate specific patterns of association between different groups of flies and species of larvae. This study demonstrated that C. rufifacies does not show reduced attraction to any of the resources. A tetrahedron olfactometer device has been used for the first time in a behavioral study of C. rufifacies flies. This may enable future studies to enhance the understanding of fly behavior.
Recent advancements in machine learning for bone marrow cell morphology analysis
Authors: Lin Yifei , Chen Qingquan , Chen Tebin
Published: June 2024

As machine learning progresses, techniques such as neural networks, decision trees, and support vector machines are being increasingly applied in the medical domain, especially for tasks involving large datasets, such as cell detection, recognition, classification, and visualization. Within the domain of bone marrow cell morphology analysis, deep learning offers substantial benefits due to its robustness, ability for automatic feature learning, and strong image characterization capabilities. Deep neural networks are a machine learning paradigm specifically tailored for image processing applications. Artificial intelligence serves as a potent tool in supporting the diagnostic process of clinical bone marrow cell morphology. Despite the potential of artificial intelligence to augment clinical diagnostics in this domain, manual analysis of bone marrow cell morphology remains the gold standard and an indispensable tool for identifying, diagnosing, and assessing the efficacy of hematologic disorders. However, the traditional manual approach is not without limitations and shortcomings, necessitating, the exploration of automated solutions for examining and analyzing bone marrow cytomorphology. This review provides a multidimensional account of six bone marrow cell morphology processes: automated bone marrow cell morphology detection, automated bone marrow cell morphology segmentation, automated bone marrow cell morphology identification, automated bone marrow cell morphology classification, automated bone marrow cell morphology enumeration, and automated bone marrow cell morphology diagnosis. Highlighting the attractiveness and potential of machine learning systems based on bone marrow cell morphology, the review synthesizes current research and recent advances in the application of machine learning in this field. The objective of this review is to offer recommendations to hematologists for selecting the most suitable machine learning algorithms to automate bone marrow cell morphology examinations, enabling swift and precise analysis of bone marrow cytopathic trends for early disease identification and diagnosis. Furthermore, the review endeavors to delineate potential future research avenues for machine learning-based applications in bone marrow cell morphology analysis.
Ethical considerations in the regulation and use of herbal medicines in the European Union
Authors: Gatt Anthony Raphael , Vella Bonanno Patricia , Zammit Raymond
Published: June 2024

The regulation and use of herbal medicines is a topic of debate due to concerns about their quality, safety, and efficacy. EU Directive 2004/24/EC on Herbal Medicinal Products was a significant step towards establishing a regulatory framework for herbal medicinal products in the EU, and bridging the gap between conventional and herbal medicines. This Directive allows herbal medicinal products to be marketed in the EU through full marketing authorisation, well-established use, and traditional use of herbal medicinal products. The framework relies on the correlation between the therapeutic claims of herbal medicine and the scientific evidence backing them up: the greater the claims made regarding medicinal benefits, the more evidence is required to substantiate its efficacy and safety. This regulatory framework acknowledges and incorporates traditional knowledge when evaluating herbal medicines, showcasing a balanced approach that values cultural traditions while mandating monographs for traditional herbal medicinal products. Excluding herbal medicines completely limits access to affordable treatment, particularly when they serve as the only alternative for some, and protects consumer autonomy. This EU framework could therefore serve as a practical guidance for the use and regulation of herbal medicines, even outside the EU. In conclusion, it is argued that the same moral imagination and courage shown by regulators in the case of herbal medicines could perhaps be used in the regulatory frameworks of other healthcare products.
STAT3 drives the malignant progression of low-grade gliomas through modulating the expression of STAT1, FOXO1, and MYC
Authors: Li Yan , Jiang Fanjing , Zhu Suhua , Jia Hongwei , Li Changwei
Published: June 2024

Low-grade glioma (LGG) is a prevalent and lethal primary brain malignancy, with most patients succumbing to recurrence and progression. The signal transducer and activator of transcription (STAT) family has long been implicated in tumor initiation and progression. However, a comprehensive evaluation of the expression status and overall function of STAT genes in LGG remains largely unreported. In this study, we investigated the association between the expression of STAT family genes and the progression of LGG. Through a comprehensive analysis that combined bioinformatics screening and validation assays, we determined that STAT1, STAT3, and STAT5A were upregulated and contributed to the malignant progression of LGG. Notably, our findings suggest that STAT3 is a critical prognostic marker that regulates the progression of LGG. STAT3 emerged as the most significant prognostic indicator governing the advancement of LGG. Additionally, our inquiry into the STAT3-binding proteins and differentially expressed-correlated genes (DEGs) revealed that STAT3 played a pivotal role in the progression of LGG by stimulating the expression of STAT1, FOXO1, and MYC. In summary, our recent study conducted a thorough analysis of the STAT family genes and revealed that directing therapeutic interventions towards STAT3 holds potential as a viable strategy for treating patients with LGG.
Changes of cerebrospinal fluid pressure gradient in different body positions under experimental impairment of cerebrospinal fluid pathway: new insight into hydrocephalus development
Authors: Jurjević Ivana , Orešković Darko , Radoš Milan , Brgić Klara , Klarica Marijan
Published: June 2024

It is generally accepted that hydrocephalus is a consequence of the disbalance between cerebrospinal fluid (CSF) secretion and absorption which should in turn lead to CSF pressure gradient development and ventricular enlargement. To test CSF pressure gradient role in hydrocephalus development, we experimentally caused CSF system impairment at two sites in cats. In the first group of animals, we caused Sylvian aqueduct obstruction and recorded CSF pressure changes pre and post obstruction at three measuring sites (lateral ventricle -LV, cortical-CSS and lumbar subarachnoid space -LSS) during 15 min periods and in different body positions over 360 degrees. In the second group of experiments, we caused cervical stenosis by epidural plastic semiring implantation and monitored CSF pressure changes pre and post stenosis implantation at two measuring sites (lateral ventricle and lumbar subarachnoid space) during 15 min periods in different body positions over 360 degrees. Both groups of experimental animals had similar CSF pressures before stenosis or obstruction at all measuring points in the horizontal position. During head-up verticalization, CSF pressures inside the cranium gradually became more subatmospheric with no significant difference between LV and CSS, as they are measured at the same hydrostatic level, while CSF pressure inside LSS became more positive, causing the development of a large hydrostatic gradient between the cranial and the spinal space. With cervical stenosis, CSF pressure inside the cranium is positive during head-up verticalization, while in cats with aqueductal obstruction CSF pressure inside the CSS remains negative, as it was during control period. Concomitantly, CSF pressure inside LV becomes less negative, thus creating a small hydrostatic gradient between LV and CSS. Since CSF pressure and gradient changes occur only by shifting body position from the horizontal plane, our results indicate that cervical stenosis in a head-up vertical position reduces blood perfusion of the whole brain, while aqueductal obstruction impairs only the perfusion of the local periventricular brain tissue. It seems that, for evolutionary important bipedal activity, free craniospinal communication and good spinal space compliance represent crucial biophysical parameters for adequate cerebral blood perfusion and prevention of pathophysiological changes leading to the development of hydrocephalus.
Preliminary evidence of high prevalence of cerebral microbleeds in astronauts with spaceflight experience
Authors: Burles Ford , Willson Morgan , Townes Parker , Yang Allison , Iaria Giuseppe
Published: June 2024

Long-duration spaceflight poses a variety of health risks to astronauts, largely resulting from extended exposure to microgravity and radiation. Here, we assessed the prevalence and incidence of cerebral microbleeds in sixteen astronauts before and after a typical 6-month mission on board the International Space Station Cerebral microbleeds are microhemorrhages in the brain, which are typically interpreted as early evidence of small vessel disease and have been associated with cognitive impairment. We identified evidence of higher-than-expected microbleed prevalence in astronauts with prior spaceflight experience. However, we did not identify a statistically significant increase in microbleed burden up to 7 months after spaceflight. Altogether, these preliminary findings suggest that spaceflight exposure may increase microbleed burden, but this influence may be indirect or occur over time courses that exceed 1 year. For health monitoring purposes, it may be valuable to acquire neuroimaging data that are able to detect the occurrence of microbleeds in astronauts following their spaceflight missions.
Ecophysiological and nutritional characterisation of two morphotypes of Cakile maritima subsp. maritima Scop. from Puglia region, Southern Italy
Authors: Conversa Giulia , Botticella Lucia , Lazzizera Corrado , Bonasia Anna , Elia Antonio
Published: June 2024

Cakile maritima subsp. maritima Scop. (sea rocket) is a succulent halophyte with significant potential as a nutritious food source, being rich in essential nutrients such as vitamins, minerals, and antioxidants. This annual species exhibits two distinct leaf morphotypes: entire lamina (EL) and pinnatifid lamina (PL). Our understanding of their ecophysiological and nutritional profiles is still limited. The present study investigated the wild EL and PL sea rocket plants from southern Italy during their vegetative stage. The bio-morphological traits (leaf mass area-LMA, dry matter and chlorophyll concentrations), main inorganic ions, key antioxidants (carotenoids, anthocyanins, phenols, flavonoids, glucosinolates, vitamin C as ascorbic and dehydroascorbic acid), and antioxidant activity (by FRAP, DPPH, ABTS assays) were analyzed. Additionally, photosynthetic gas exchange and chlorophyll fluorescence were measured. PL plants showed thicker leaves (higher LMA) and greater accumulation of photo-protective pigments (carotenoids and anthocyanins), despite similar chlorophyll levels. The PL plants also demonstrated higher photosynthetic activity, transpiration rates, and stomatal conductance, with reduced non-photochemical quenching. The EL morphotype had higher cation (K, Mg, Ca, Na) and vitamin C (135.3 mg 100 g-1 FW) concentrations, while no significant disparities were observed between the morphotypes in phenolic concentration (208.5 mg g.a.e. 100 g-1 FW), flavonoids (71.5 mg q.e. 100 g-1 FW), or glucosinolates (61 mg g-1 FW). Interestingly, while the EL type had higher vitamin C, the PL morphotype showed superior antioxidant activity (FRAP, DPPH) and seems to be better adapted to water/nutrient scarcity typical of southern Italy. Both morphotypes offer potential as high-nutritional foods, however, future research should investigate the genotype-specific production of antioxidant compounds in EL and PL plants in response to environmental stresses, including salinity for potential exploitation as a new crop.
Epidemiology and antimicrobial resistance of Mycobacterium spp. in the United Arab Emirates: a retrospective analysis of 12 years of national antimicrobial resistance surveillance data
Authors: Thomsen Jens , Abdulrazzaq Najiba M. , Nyasulu Peter S. , Al Hosani Farida , Habous Maya , Weber Stefan , Jabeen Fouzia ,   The UAE AMR Surveillance Consortium, Menezes Godfred Antony , Moubareck Carole Ayoub , Senok Abiola , Everett Dean B.
Published: June 2024

Introduction

The Eastern Mediterranean Regional Office (EMRO) region accounts for almost 8% of all global Mycobacterium tuberculosis (TB) cases, with TB incidence rates ranging from 1 per 100,000 per year in the United Arab Emirates (UAE) to 204 per 100,000 in Djibouti. The national surveillance data from the Middle East and North Africa (MENA) region on the epidemiology and antimicrobial resistance trends of TB, including MDR-TB remains scarce.

Methods

A retrospective 12-year analysis of N = 8,086 non-duplicate diagnostic Mycobacterium tuberculosis complex (MTB complex) isolates from the UAE was conducted. Data were generated through routine patient care during the 2010–2021 years, collected by trained personnel and reported by participating surveillance sites to the UAE National Antimicrobial Resistance (AMR) Surveillance program. Data analysis was conducted with WHONET, a windows-based microbiology laboratory database management software developed by the World Health Organization Collaborating Center for Surveillance of Antimicrobial Resistance, Boston, United States (https://whonet.org/).

Results

A total of 8,086 MTB-complex isolates were analyzed. MTB-complex was primarily isolated from respiratory samples (sputum 80.1%, broncho-alveolar lavage 4.6%, pleural fluid 4.1%). Inpatients accounted for 63.2%, including 1.3% from ICU. Nationality was known for 84.3% of patients, including 3.8% Emiratis. Of UAE non-nationals, 80.5% were from 110 countries, most of which were Asian countries. India accounted for 20.8%, Pakistan 13.6%, Philippines 12.7%, and Bangladesh 7.8%. Rifampicin-resistant MTB-complex isolates (RR-TB) were found in 2.8% of the isolates, resistance to isoniazid, streptomycin, pyrazinamide, and ethambutol, was 8.9, 6.9, 3.4 and 0.4%, respectively. A slightly increasing trend of resistance among MTB-complex was observed for rifampicin from 2.5% (2010) to 2.8% (2021).

Conclusion

Infections due to MTB-complex are relatively uncommon in the United Arab Emirates compared to other countries in the MENA region. Most TB patients in the UAE are of Asian origin, mainly from countries with a high prevalence of TB. Resistance to first line anti-tuberculous drugs is generally low, however increasing trends for MDR-TB mainly rifampicin linked resistance is a major concern. MDR-TB was not associated with a higher mortality, admission to ICU, or increased length of hospitalization as compared to non-MDR-TB.
Silicone-layered waterproof electrohydraulic soft actuators for bio-inspired underwater robots
Authors: Shibuya Takumi , Watanabe Shuya , Shintake Jun
Published: June 2024

Electrohydraulic soft actuators are a promising soft actuation technology for constructing bio-inspired underwater robots owing to the features of this technology such as large deformations and forces, fast responses, and high electromechanical efficiencies. However, this actuation technology requires high voltages, thereby limiting the use of these actuators in water and hindering the development of underwater robots. This paper describes a method for creating bio-inspired underwater robots using silicone-layered electrohydraulic soft actuators. The silicone layer functions as an insulator, enabling the application of high voltages underwater. Moreover, bending and linear actuation can be achieved by applying the silicone layers on one or both sides of the actuator. As a proof of concept, bending and linear actuators with planar dimensions of 20 mm × 40 mm (length × width) are fabricated and characterized. Underwater actuation is observed in both types of actuators. The bending actuators exhibit a bending angle and blocked force of 39.0° and 9.6 mN, respectively, at an applied voltage of 10 kV. Further, the linear actuators show a contraction strain and blocked force of 6.6% and 956.1 mN, respectively, at an applied voltage of 10 kV. These actuators are tested at a depth near the surface of water. This ensured that they can operate at least at that depth. The actuators are subsequently used to implement various soft robotic devices such as a ray robot, a fish robot, a water-surface sliding robot, and a gripper. All of the robots exhibit movements as expected; up to 31.2 mm/s (0.91 body length/s) of locomotion speed is achieved by the swimming robots and a retrieve and place task is performed by the gripper. The results obtained in this study indicate the successful implementation of the actuator concept and its high potential for constructing bio-inspired underwater robots and soft robotics applications.
Integrated Disease Management for the Sustainable Production of Colombian Coffee
Authors: Ferrucho Rosa Lilia , Marín-Ramírez Gustavo Adolfo , Gaitan Alvaro
Published: June 2024

Coffee stands as a vital pillar of Colombia’s economic prosperity, constituting approximately 7% of the nation’s agricultural GDP. Moreover, it serves as a significant contributor to national agricultural employment, with direct jobs stemming from coffee cultivation comprising 26% of the total agricultural workforce. This underscores the pivotal role coffee plays in shaping Colombia’s social and economic landscape, solidifying its position as the primary origin of mildly washed coffees for global consumers. However, Colombia’s coffee production grapples with the challenge of operating amidst persistently rainy conditions, fostering an environment conducive to fungal diseases. This, compounded by environmental, economic, commercial, and safety constraints for disease control, creates a multifaceted scenario that continuously tests disease management strategies. Addressing this complex dynamic demands a crop protection framework that seamlessly integrates efficient and sustainable methodologies. Such methodologies should prioritize outbreak prevention, cost-effectiveness, adherence to national and international regulations, and the preservation of environmental and human health. Integrated disease management emerges as a solution capable of optimizing productivity tailored to the unique conditions of each plot. By mitigating the impact of pathogens while responsibly utilizing and conserving natural resources, this approach safeguards the well-being of both producers and consumers alike.
Development in Agricultural Ecosystems’ Carbon Emissions Research: A Visual Analysis Using CiteSpace
Authors: Wu Linjing , Miao Haiying , Liu Taoze
Published: June 2024

Farmland ecosystems represent a vital carbon source and sink within terrestrial ecosystems. The investigation into the characteristics of carbon emissions and their influencing factors within farmland ecosystems is crucial for the realization of carbon reduction and the promotion of low-carbon development. This study leveraged the analytical prowess of CiteSpace software (version 6.1.5) to examine a comprehensive body of 2805 scholarly works related to carbon emissions within agricultural ecosystems, as documented in the Web of Science Core Database from 1991 through to 2023. Through a visual dissection of data based on national, institutional, and thematic dimensions, the study elucidated emergent focal points and evolving trajectories within this scholarly domain. The findings revealed that current scholarly discussions on carbon emissions from agricultural lands have primarily focused on three key areas: the factors that influence these emissions, the possibilities for their reduction, and the subsequent environmental impacts. Focal points of research have predominantly centered on four key themes: “greenhouse gas emissions from farmland ecosystems”, “carbon emission models for farmland ecosystems”, ”carbon sequestration in farmland ecosystems”, and ”sustainable development in agricultural ecosystems”. The academic perspective has gradually shifted from a broad overview of carbon emissions towards a detailed examination of the determinants of emissions and the efficiency of agricultural resource utilization. Looking forward, it is crucial to explore the mechanisms behind high-carbon agricultural practices and to establish their optimal operational thresholds. The focus of research is shifting from macro carbon emissions to the analysis of emission factors and the efficiency of agricultural input use. Future efforts should emphasize exploring the mechanisms of the environmental impacts caused by high-carbon agricultural inputs and the optimal input levels, refining emission reduction methods in agricultural ecosystems, and promoting collaboration and exchange among researchers worldwide.
An In Vitro System Mimics the Intestinal Microbiota of Striped Beakfish (Oplegnathus fasciatus) and Inhibits Vibrio alginolyticus by Limosilactobacillus reuteri-Derived Extracellular Vesicles
Authors: Lee Bao-Hong , Hu Yeh-Fang , Das Sofia Priyadarsani , Chu Yu-Ting , Hsu Wei-Hsuan , Nan Fan-Hua
Published: June 2024

Extracellular vesicles (EVs) are functional substances secreted by microbes and host cells, and it has been discovered that they participate in the interactions between different microorganisms. Our recent findings indicate that Limosilactobacillus reuteri-derived EVs have the potential to improve the intestinal microbiota of Oplegnathus fasciatus fish and inhibit pathogenic bacteria. Previous research has reported that the host intestinal cells play a regulatory role in the intestinal microbiota. This suggested that to investigate the mechanisms through which L. reuteri-derived EVs regulate the intestinal microbiota, a system that excludes interference from host intestinal cells should be established. In this study, an in vitro cultured intestinal bacteria system, without host factors, was used to simulate the intestinal microbiota of O. fasciatus fish. After adding L. reuteri-derived EVs to the system, the changes in the microbiota were analyzed. The results showed that L. reuteri-derived EVs effectively reduced the abundance of Vibrio spp. In the results of the in vitro experiments, it was also observed that L. reuteri-derived EVs have the ability to inhibit Vibrio alginolyticus. We further sequenced the small RNA contained in L. reuteri-derived EVs and found that these small RNAs can interfere with genes (LysR, pirin, MIpA/OmpV, CatB, and aspartate-semialdehyde dehydrogenase) related to the growth of V. alginolyticus. Taken together, the results indicate that in the absence of host involvement, the small RNAs present in L. reuteri-derived EVs have the function of inhibiting pathogenic bacteria and exhibit the potential to regulate the intestinal microbiota.
Influence of CO2 and Dust on the Survival of Non-Resistant and Multi-Resistant Airborne E. coli Strains
Authors: Agarwal Viktoria , Abd El Elena , Danelli Silvia Giulia , Gatta Elena , Massabò Dario , Mazzei Federico , Meier Benedikt , Prati Paolo , Vernocchi Virginia , Wang Jing
Published: June 2024

The airborne transmission of bacterial pathogens poses a significant challenge to public health, especially with the emergence of antibiotic-resistant strains. This study investigated environmental factors influencing the survival of airborne bacteria, focusing on the effects of different carbon dioxide (CO2) and dust concentrations. The experiments were conducted in an atmospheric simulation chamber using the non-resistant wild-type E. coli K12 (JM109) and a multi-resistant variant (JM109-pEC958). Different CO2 (100 ppm, 800 ppm, 3000 ppm) and dust concentrations (250 µg m−3, 500 µg m−3, 2000 µg m−3) were tested to encompass a wide range of CO2 and dust levels. The results revealed that JM109-pEC958 exhibited greater resilience to high CO2 and dust concentrations compared to its non-resistant counterpart. At 3000 ppm CO2, the survival rate of JM109 was significantly reduced, while the survival rate of JM109-pEC958 remained unaffected. At the dust concentration of 250 µg m−3, JM109 exhibited significantly reduced survival, whereas JM109-pEC958 did not. When the dust concentration was increased to 500 and 2000 µg m−3, even the JM109-pEC958 experienced substantially reduced survival rates, which were still significantly higher than those of its non-resistant counterpart at these concentrations. These findings suggest that multi-resistant E. coli strains possess mechanisms enabling them to endure extreme environmental conditions better than non-resistant strains, potentially involving regulatory genes or efflux pumps. The study underscores the importance of understanding bacterial adaptation strategies to develop effective mitigation approaches against antibiotic-resistant bacteria in atmospheric environments. Overall, this study provides valuable insights into the interplay between environmental stressors and bacterial survival, serving as a foundational step towards elucidating the adaptation mechanisms of multi-resistant bacteria and informing strategies for combating antibiotic resistance in the atmosphere.
Electrical Pulse Stimulation Protects C2C12 Myotubes against Hydrogen Peroxide-Induced Cytotoxicity via Nrf2/Antioxidant Pathway
Authors: Pribil Pardun Sarah , Bhat Anjali , Anderson Cody P. , Allen Michael F. , Bruening Will , Jacob Joel , Pendyala Ved Vasishtha , Yu Li , Bruett Taylor , Zimmerman Matthew C. , Park Song-Young , Zucker Irving H. , Gao Lie
Published: June 2024

Skeletal muscle contraction evokes numerous biochemical alterations that underpin exercise benefits. This present study aimed to elucidate the mechanism for electrical pulse stimulation (EPS)-induced antioxidant adaptation in C2C12 myotubes. We found that EPS significantly upregulated Nrf2 and a broad array of downstream antioxidant enzymes involved in multiple antioxidant systems. These effects were completely abolished by pretreatment with a ROS scavenger, N-acetylcysteine. MitoSOX-Red, CM-H2DCFDA, and EPR spectroscopy revealed a significantly higher ROS level in mitochondria and cytosol in EPS cells compared to non-stimulated cells. Seahorse and Oroboros revealed that EPS significantly increased the maximal mitochondrial oxygen consumption rate, along with an upregulated protein expression of mitochondrial complexes I/V, mitofusin-1, and mitochondrial fission factor. A post-stimulation time-course experiment demonstrated that upregulated NQO1 and GSTA2 last at least 24 h following the cessation of EPS, whereas elevated ROS declines immediately. These findings suggest an antioxidant preconditioning effect in the EPS cells. A cell viability study suggested that the EPS cells displayed 11- and 36-fold higher survival rates compared to the control cells in response to 2 and 4 mM H2O2 treatment, respectively. In summary, we found that EPS upregulated a large group of antioxidant enzymes in C2C12 myotubes via a contraction-mitochondrial-ROS-Nrf2 pathway. This antioxidant adaptation protects cells against oxidative stress-associated cytotoxicity.
Changes in Faecal Microbiota Profile and Plasma Biomarkers following the Administration of an Antioxidant Oleuropein-Rich Leaf Extract in a Rat Model Mimicking Colorectal Cancer
Authors: Chioccioli Sofia , Rocchetti Gabriele , Ruzzolini Jessica , Urciuoli Silvia , Vitali Francesco , Bartolucci Gianluca , Pallecchi Marco , Caderni Giovanna , De Filippo Carlotta , Nediani Chiara , Lucini Luigi
Published: June 2024

Oleuropein (OLE), a phenolic compound particularly abundant in the olive leaves, has been reported to have beneficial activities against colorectal cancer (CRC). In vitro studies suggested that these latter could be due to a modulation of the intestinal microbiota. Aiming to evaluate if OLE could affect the intestinal microbiota and the plasma metabolome, an antioxidant oleuropein-rich leaf extract (ORLE) was administered for one week to PIRC rats (F344/NTac-Apcam1137), a genetic model mimicking CRC. ORLE treatment significantly modulated the gut microbiota composition. Plasma metabolomic profiles revealed a significant predictive ability for amino acids, medium-chain fatty acids, and aldehydes. Pathway analysis revealed a significant decrease in phosphatidylcholine accumulation (LogFC = −1.67) in PIRC rats. These results suggest a significant effect of ORLE administration on faecal microbiota profiles and plasma metabolomes, thereby offering new omics-based insights into its protective role in CRC progression.
Dopamine D2 Receptor Activation Blocks GluA2/ROS Positive Feedback Loop to Alienate Chronic-Migraine-Associated Pain Sensitization
Authors: Zhang Wei , Zhang Xiaoyan , Lei Ming , Zhang Dunke , Qin Guangcheng , Zhou Jiying , Ji Lichun , Chen Lixue
Published: June 2024

Chronic migraine is a disabling disorder without effective therapeutic medicine. AMPA receptors have been proven to be essential to pathological pain and headaches, but the related regulatory mechanisms in chronic migraine have not yet been explored. In this study, we found that the level of surface GluA2 was reduced in chronic migraine rats. Tat-GluR23Y (a GluA2 endocytosis inhibitor) reduced calcium inward flow and weakened synaptic structures, thus alleviating migraine-like pain sensitization. In addition, the inhibition of GluA2 endocytosis reduced the calcium influx and alleviated mitochondrial calcium overload and ROS generation in primary neurons. Furthermore, our results showed that ROS can induce allodynia and GluA2 endocytosis in rats, thus promoting migraine-like pain sensitization. In our previous study, the dopamine D2 receptor was identified as a potential target in the treatment of chronic migraine, and here we found that dopamine D2 receptor activation suppressed chronic-migraine-related pain sensitization through blocking the GluA2/ROS positive feedback loop in vivo and in vitro. Additionally, ligustrazine, a core component of ligusticum chuanxiong, was shown to target the dopamine D2 receptor, thereby alleviating ROS production and abnormal nociception in CM rats. This study provides valuable insight into the treatment of chronic migraine.
Evaluating Real Driving Emissions of Compressed Natural Gas Taxis in Chongqing, China—A Typical Mountain Cities
Authors: Hu Wei , Duan Linfeng , Tang Min , Yuan Rui , Lv Gaiyan , Lv Pingjiang , Li Zhenliang , Li Ling , Xu Hualong , Ding Jiajia , Zhang Dan
Published: June 2024

Compressed natural gas (CNG) taxis represent the most ubiquitous and dynamically active passenger vehicles in urban settings. The pollutant emission characteristics of in-use CNG taxis driving on a typical mountain city before and after three-way catalyst (TWC) replacement was examined using a modular on-board portable emissions measurement system (PEMS), the OBS-ONE developed by Horiba. The results showed that the exhaust NO of CNG taxis equipped with deactivation TWC exceeded the emission limits, even higher than gasoline vehicles. The high emission rate of CNG taxis is mainly concentrated on road slopes between a 2% and 6% gradient and a deceleration rate in the interval of [0.5, 4], respectively, which results in higher emissions from CNG taxis traveling in the mountain city of Chongqing than other cities and vehicles. Moreover, the pollutant emission rates of the in-use CNG taxis were highly correlated with the velocity and the vehicle specific power (VSP). After a new TWC replacement, the emission factors of carbon monoxide (CO), total hydrocarbons (THC), nitrogen oxides (NOx), and particle number (PN) decreased by 85.21–89.11%, 68.71–85.49%, 60.91–81.11%, and 62.26–68.39%, respectively. Our results will provide guidance for urban environments to carry out the comprehensive management of in-use vehicles and emphasize the importance of TWC replacement for CNG taxis.
Homotopy Analysis Transform Method for a Singular Nonlinear Second-Order Hyperbolic Pseudo-Differential Equation
Authors: Mesloub Said , Gadain Hassan Eltayeb
Published: June 2024

In this study, we employed the homotopy analysis transform method (HATM) to derive an iterative scheme to numerically solve a singular second-order hyperbolic pseudo-differential equation. We evaluated the effectiveness of the derived scheme in solving both linear and nonlinear equations of similar nature through a series of illustrative examples. The stability of this scheme in handling the approximate solutions of these examples was studied graphically and numerically. A comparative analysis with existing methodologies from the literature was conducted to assess the performance of the proposed approach. Our findings demonstrate that the HATM-based method offers notable efficiency, accuracy, and ease of implementation when compared to the alternative technique considered in this study.
Towards a Refined Heuristic Evaluation: Incorporating Hierarchical Analysis for Weighted Usability Assessment
Authors: Talero-Sarmiento Leonardo , Gonzalez-Capdevila Marc , Granollers Antoni , Lamos-Diaz Henry , Pistili-Rodrigues Karine
Published: June 2024

This study explores the implementation of the analytic hierarchy process in usability evaluations, specifically focusing on user interface assessment during software development phases. Addressing the challenge of diverse and unstandardized evaluation methodologies, our research develops and applies a tailored algorithm that simplifies heuristic prioritization. This novel method combines the analytic hierarchy process framework with a bespoke algorithm that leverages transitive properties for efficient pairwise comparisons, significantly reducing the evaluative workload. The algorithm is designed to facilitate the estimation of heuristic relevance regardless of the number of items per heuristic or the item scale, thereby streamlining the evaluation process. Rigorous simulation testing of this tailored algorithm is complemented by its empirical application, where seven usability experts evaluate a web interface. This practical implementation demonstrates our method’s ability to decrease the necessary comparisons and simplify the complexity and workload associated with the traditional prioritization process. Additionally, it improves the accuracy and relevance of the user interface usability heuristic testing results. By prioritizing heuristics based on their importance as determined by the Usability Testing Leader—rather than merely depending on the number of items, scale, or heuristics—our approach ensures that evaluations focus on the most critical usability aspects from the start. The findings from this study highlight the importance of expert-driven evaluations for gaining a thorough understanding of heuristic UI assessment, offering a wider perspective than user-perception-based methods like the questionnaire approach. Our research contributes to advancing UI evaluation methodologies, offering an organized and effective framework for future usability testing endeavors.
A Convexity-Preserving Level-Set Method for the Segmentation of Tumor Organoids
Authors: Lei Xiaoyi , Gui Luying , Liu Hairong
Published: June 2024

Tumor organoid cultures play a crucial role in clinical practice, particularly in guiding medication by accurately determining the morphology and size of the organoids. However, segmenting individual tumor organoids is challenging due to their inhomogeneous internal intensity and overlapping structures. This paper proposes a convexity-preserving level-set segmentation 4 model based on the characteristics of tumor organoid images to segment individual tumor organoids precisely. Considering the predominant spherical shape exhibited by organoid growth, we propose a level-set model that includes a data-driven term, a curvature term, and a regularization term. The data-driven term pulls the contour to the vicinity of the boundary; the curvature term ensures the maintenance of convexity in the targeted segmentation, and the regularization term controls the smoothness and propagation of the contour. The proposed model aids in overcoming interference from factors such as overlap and noise, enabling the evolving curve to converge to the actual boundary of the target accurately. Furthermore, we propose a selectable and targeted initialization method that guarantees precise segmentation of specific regions of interest. Experiments on 51 pancreatic ductal adenocarcinoma organoid images show that our model achieved excellent segmentation results. The average Dice value and computation time are 98.81±0.48% and 20.67 s. Compared with the C-V and CPLSE models, it is more accurate and takes less time.