bluuebunny/crossref_metadata_2025 huggingface dataset:
Supplementary Table 2 from Novel Associations between Common Breast Cancer Susceptibility Variants and Risk-Predicting Mammographic Density Measures
Authors: Stone Jennifer , Thompson Deborah J. , dos Santos Silva Isabel , Scott Christopher , Tamimi Rulla M. , Lindstrom Sara , Kraft Peter , Hazra Aditi , Li Jingmei , Eriksson Louise , Czene Kamila , Hall Per , Jensen Matt , Cunningham Julie , Olson Janet E. , Purrington Kristen , Couch Fergus J. , Brown Judith , Leyland Jean , Warren Ruth M.L. , Luben Robert N. , Khaw Kay-Tee , Smith Paula , Wareham Nicholas J. , Jud Sebastian M. , Heusinger Katharina , Beckmann Matthias W. , Douglas Julie A. , Shah Kaanan P. , Chan Heang-Ping , Helvie Mark A. , Le Marchand Loic , Kolonel Laurence N. , Woolcott Christy , Maskarinec Gertraud , Haiman Christopher , Giles Graham G. , Baglietto Laura , Krishnan Kavitha , Southey Melissa C. , Apicella Carmel , Andrulis Irene L. , Knight Julia A. , Ursin Giske , Alnaes Grethe I. Grenaker , Kristensen Vessela N. , Borresen-Dale Anne-Lise , Gram Inger Torhild , Bolla Manjeet K. , Wang Qin , Michailidou Kyriaki , Dennis Joe , Simard Jacques , Pharoah Paul , Dunning Alison M. , Easton Douglas F. , Fasching Peter A. , Pankratz V. Shane , Hopper John L. , Vachon Celine M.
Published: April 2023

Supplementary Table 2. Associations (95% Confidence Interval (CI) in brackets) between all 77 breast cancer susceptibility variants and percent dense area, dense area, and non-dense area
Supplementary Movie 5 from STAT3-Mediated Autophagy Dependence Identifies Subtypes of Breast Cancer Where Autophagy Inhibition Can Be Efficacious
Authors: Maycotte Paola , Gearheart Christy M. , Barnard Rebecca , Aryal Suraj , Mulcahy Levy Jean M. , Fosmire Susan P. , Hansen Ryan J. , Morgan Michael J. , Porter Christopher C. , Gustafson Daniel L. , Thorburn Andrew
Published: April 2023

MOV file - 3094K, MDAMB468 cells were transduced with a Non-silencing shRNA and imaged for 48h.
Supplementary Movie 4 from STAT3-Mediated Autophagy Dependence Identifies Subtypes of Breast Cancer Where Autophagy Inhibition Can Be Efficacious
Authors: Maycotte Paola , Gearheart Christy M. , Barnard Rebecca , Aryal Suraj , Mulcahy Levy Jean M. , Fosmire Susan P. , Hansen Ryan J. , Morgan Michael J. , Porter Christopher C. , Gustafson Daniel L. , Thorburn Andrew
Published: April 2023

MOV file - 2644K, MDAMB231 cells were transduced with an ATG7 shRNA and imaged for 48h.
Supplementary Movie 2 from STAT3-Mediated Autophagy Dependence Identifies Subtypes of Breast Cancer Where Autophagy Inhibition Can Be Efficacious
Authors: Maycotte Paola , Gearheart Christy M. , Barnard Rebecca , Aryal Suraj , Mulcahy Levy Jean M. , Fosmire Susan P. , Hansen Ryan J. , Morgan Michael J. , Porter Christopher C. , Gustafson Daniel L. , Thorburn Andrew
Published: April 2023

MOV file - 2566K, MCF7 cells were transduced with an ATG7 shRNA and imaged for 48h.
Supplemental Figure S3 from Oncogenic HRAS Activates Epithelial-to-Mesenchymal Transition and Confers Stemness to p53-Deficient Urothelial Cells to Drive Muscle Invasion of Basal Subtype Carcinomas
Authors: He Feng , Melamed Jonathan , Tang Moon-shong , Huang Chuanshu , Wu Xue-Ru
Published: April 2023

Supplemental Figure S3. Squamous differentiation of muscle-invasive urothelial carcinoma of the bladder.
Supplemental Figure S2 from Oncogenic HRAS Activates Epithelial-to-Mesenchymal Transition and Confers Stemness to p53-Deficient Urothelial Cells to Drive Muscle Invasion of Basal Subtype Carcinomas
Authors: He Feng , Melamed Jonathan , Tang Moon-shong , Huang Chuanshu , Wu Xue-Ru
Published: April 2023

Supplemental Figure S2. Cell proliferation assay.
Supplemental Figure S1 from Oncogenic HRAS Activates Epithelial-to-Mesenchymal Transition and Confers Stemness to p53-Deficient Urothelial Cells to Drive Muscle Invasion of Basal Subtype Carcinomas
Authors: He Feng , Melamed Jonathan , Tang Moon-shong , Huang Chuanshu , Wu Xue-Ru
Published: April 2023

Supplemental Figure S1. Overexpression of RAS effectors in Upk2-HRAS*/WT transgenic mice.
Supplemental Figure Legends from Oncogenic HRAS Activates Epithelial-to-Mesenchymal Transition and Confers Stemness to p53-Deficient Urothelial Cells to Drive Muscle Invasion of Basal Subtype Carcinomas
Authors: He Feng , Melamed Jonathan , Tang Moon-shong , Huang Chuanshu , Wu Xue-Ru
Published: April 2023

Supplemental Figure Legends. Legends for Supplemental Table and Figures
Supplemental Table 2 from The Cyclic AMP Pathway Is a Sex-Specific Modifier of Glioma Risk in Type I Neurofibromatosis Patients
Authors: Warrington Nicole M. , Sun Tao , Luo Jingqin , McKinstry Robert C. , Parkin Patricia C. , Ganzhorn Sara , Spoljaric Debra , Albers Anne C. , Merkelson Amanda , Stewart Douglas R. , Stevenson David A. , Viskochil David , Druley Todd E. , Forys Jason T. , Reilly Karlyne M. , Fisher Michael J. , Tabori Uri , Allen Jeffrey C. , Schiffman Joshua D. , Gutmann David H. , Rubin Joshua B.
Published: April 2023

Supplemental Table 2: List of SNPs analyzed.
Supplementary Figure S4 from Rho Kinase Inhibitors Block Melanoma Cell Migration and Inhibit Metastasis
Authors: Sadok Amine , McCarthy Afshan , Caldwell John , Collins Ian , Garrett Michelle D. , Yeo Maggie , Hooper Steven , Sahai Erik , Kuemper Sandra , Mardakheh Faraz K. , Marshall Christopher J.
Published: April 2023

Supplementary Figure S4. Images of lung parenchyma invaded by both orange (CCT54-treated) cells and green (vehicle -treated) cells.
Supplementary Methods, Figure Legends, Tables 1 - 2 from ITGBL1 Is a Runx2 Transcriptional Target and Promotes Breast Cancer Bone Metastasis by Activating the TGFβ Signaling Pathway
Authors: Li Xiao-Qing , Du Xin , Li Dong-Mei , Kong Peng-Zhou , Sun Yan , Liu Pei-Fang , Wang Qing-Shan , Feng Yu-Mei
Published: April 2023

Table S1. Primer and TaqMan Probe Sequences Used in RT-qPCR. Table S2. Representative Genes Associated with Bone Metastasis Process were Found to be Significantly Changed in ITGBL1 KD Subclone Cells Compared with Control Cells.
Movie S2 CCT54 10microM from Rho Kinase Inhibitors Block Melanoma Cell Migration and Inhibit Metastasis
Authors: Sadok Amine , McCarthy Afshan , Caldwell John , Collins Ian , Garrett Michelle D. , Yeo Maggie , Hooper Steven , Sahai Erik , Kuemper Sandra , Mardakheh Faraz K. , Marshall Christopher J.
Published: April 2023

Movie S2 CCT54 10microM. 690 melanoma cells seeded on thick Col-I gel and treated with 10micM CCT54 for 24h.
Movie S1 Vehicle from Rho Kinase Inhibitors Block Melanoma Cell Migration and Inhibit Metastasis
Authors: Sadok Amine , McCarthy Afshan , Caldwell John , Collins Ian , Garrett Michelle D. , Yeo Maggie , Hooper Steven , Sahai Erik , Kuemper Sandra , Mardakheh Faraz K. , Marshall Christopher J.
Published: April 2023

Movie S1 Vehicle. 690 melanoma cells seeded on thick Col-I gel and treated with vehilce for 24h.
supplementary Table 5 from Feed-Forward Reciprocal Activation of PAFR and STAT3 Regulates Epithelial–Mesenchymal Transition in Non–Small Cell Lung Cancer
Authors: Chen Jie , Lan Tian , Zhang Weimin , Dong Lijia , Kang Nan , Zhang Shumin , Fu Ming , Liu Bing , Liu Kangtai , Zhan Qimin
Published: April 2023

overexpression of PAFR in gastric cancer
Supplementary Dataset 5 from WDR5 Supports an N-Myc Transcriptional Complex That Drives a Protumorigenic Gene Expression Signature in Neuroblastoma
Authors: Sun Yuting , Bell Jessica L. , Carter Daniel , Gherardi Samuele , Poulos Rebecca C. , Milazzo Giorgio , Wong Jason W.H. , Al-Awar Rima , Tee Andrew E. , Liu Pei Y. , Liu Bing , Atmadibrata Bernard , Wong Matthew , Trahair Toby , Zhao Quan , Shohet Jason M. , Haupt Ygal , Schulte Johannes H. , Brown Peter J. , Arrowsmith Cheryl H. , Vedadi Masoud , MacKenzie Karen L. , Hüttelmaier Stefan , Perini Giovanni , Marshall Glenn M. , Braithwaite Antony , Liu Tao
Published: April 2023

List of N-Myc non-binding gene promoters at which H3K4me3 was not reduced by WDR5 siRNA.
supplementary Table 4 from Feed-Forward Reciprocal Activation of PAFR and STAT3 Regulates Epithelial–Mesenchymal Transition in Non–Small Cell Lung Cancer
Authors: Chen Jie , Lan Tian , Zhang Weimin , Dong Lijia , Kang Nan , Zhang Shumin , Fu Ming , Liu Bing , Liu Kangtai , Zhan Qimin
Published: April 2023

overexpression of PAFR in colon cancer
supplementary Table 3 from Feed-Forward Reciprocal Activation of PAFR and STAT3 Regulates Epithelial–Mesenchymal Transition in Non–Small Cell Lung Cancer
Authors: Chen Jie , Lan Tian , Zhang Weimin , Dong Lijia , Kang Nan , Zhang Shumin , Fu Ming , Liu Bing , Liu Kangtai , Zhan Qimin
Published: April 2023

overexpression of PAFR in breast cancer
supplementary Table 1 from Feed-Forward Reciprocal Activation of PAFR and STAT3 Regulates Epithelial–Mesenchymal Transition in Non–Small Cell Lung Cancer
Authors: Chen Jie , Lan Tian , Zhang Weimin , Dong Lijia , Kang Nan , Zhang Shumin , Fu Ming , Liu Bing , Liu Kangtai , Zhan Qimin
Published: April 2023

overexpression of PAFR in NSCLC
Supplementary Dataset 1 from WDR5 Supports an N-Myc Transcriptional Complex That Drives a Protumorigenic Gene Expression Signature in Neuroblastoma
Authors: Sun Yuting , Bell Jessica L. , Carter Daniel , Gherardi Samuele , Poulos Rebecca C. , Milazzo Giorgio , Wong Jason W.H. , Al-Awar Rima , Tee Andrew E. , Liu Pei Y. , Liu Bing , Atmadibrata Bernard , Wong Matthew , Trahair Toby , Zhao Quan , Shohet Jason M. , Haupt Ygal , Schulte Johannes H. , Brown Peter J. , Arrowsmith Cheryl H. , Vedadi Masoud , MacKenzie Karen L. , Hüttelmaier Stefan , Perini Giovanni , Marshall Glenn M. , Braithwaite Antony , Liu Tao
Published: April 2023

Genes differentially down- or up-regulated by WDR5 siRNAs by more than 1.5 fold, as shown by Affymetrix microarray, in BE(2)-C neuroblastoma cells 40 hours after siRNA transfection.
Fig. S6 from Feed-Forward Reciprocal Activation of PAFR and STAT3 Regulates Epithelial–Mesenchymal Transition in Non–Small Cell Lung Cancer
Authors: Chen Jie , Lan Tian , Zhang Weimin , Dong Lijia , Kang Nan , Zhang Shumin , Fu Ming , Liu Bing , Liu Kangtai , Zhan Qimin
Published: April 2023

Effects of PAFR on Stat3-mediated the mRNA level of EMT biomarkers in A549 and H460 cells.
Fig. S4 from Feed-Forward Reciprocal Activation of PAFR and STAT3 Regulates Epithelial–Mesenchymal Transition in Non–Small Cell Lung Cancer
Authors: Chen Jie , Lan Tian , Zhang Weimin , Dong Lijia , Kang Nan , Zhang Shumin , Fu Ming , Liu Bing , Liu Kangtai , Zhan Qimin
Published: April 2023

Effects of PAF/PAFR axis on growth and invasion of Calu-3 and H226 cells in vitro.
Supplemental Figure 5 from EGF Receptor Promotes Prostate Cancer Bone Metastasis by Downregulating miR-1 and Activating TWIST1
Authors: Chang Yung-Sheng , Chen Wei-Yu , Yin Juan Juan , Sheppard-Tillman Heather , Huang Jiaoti , Liu Yen-Nien
Published: April 2023

(A and B) TWIST1 (A) and miR-1 (B) expressions in patient samples at different clinical stages in the prostate cancer samples collected and analyzed at MSKCC. * vs. T2A. * p<0.05, ** p<0.01. (C and D) Kaplan-Meier curve showing the survival rate relative to TWIST1 (C) and miR-1 (D) expressions in prostate cancer samples collected and analyzed at MSKCC. Patient groups with high TWIST1 and low miR-1 levels (blue line) had a lower survival rate compared to groups with low TWIST1 and high miR-1 levels (black line). Hazard ratios (log rank) were 1.664 (TWIST1) and 1.907 (miR-1). X-axes show the time in months, and Y-axes show percentage survival (log rank (Mantel-Cox) test p=0.0026 (TWIST1) and p=0.0017 (miR-1)). (E) H&E and IHC staining of bone metastases with an antibody specific for TWIST1 in mouse from tumor-bearing mice inoculated with parental RasB1 (control), RasB1/miR-1 (miR-1/EV), and EGFR-rescued RasB1/miR-1 (miR-1/EGFR) cells. B: bone; T: tumor; BM: bone marrow. Scale bars represent 50 µm.
Fig. S3 from Feed-Forward Reciprocal Activation of PAFR and STAT3 Regulates Epithelial–Mesenchymal Transition in Non–Small Cell Lung Cancer
Authors: Chen Jie , Lan Tian , Zhang Weimin , Dong Lijia , Kang Nan , Zhang Shumin , Fu Ming , Liu Bing , Liu Kangtai , Zhan Qimin
Published: April 2023

PAF concentration in normal human lung cell lines and human NSCLC cell lines.
Supplemental Figure 4 from EGF Receptor Promotes Prostate Cancer Bone Metastasis by Downregulating miR-1 and Activating TWIST1
Authors: Chang Yung-Sheng , Chen Wei-Yu , Yin Juan Juan , Sheppard-Tillman Heather , Huang Jiaoti , Liu Yen-Nien
Published: April 2023

(A) Mean TWIST1 levels in human normal (n=28), primary (n=98), and metastatic (n=13) prostate samples collected and analyzed at MSKCC. * vs. normal tissue; # vs. primary cancer tissues. * p<0.05, ** p<0.01, *** p<0.001. (B and C) GSEA analyses showing enrichment of the MSKCC (B) and TCGA (C) prostate cancer datasets with EGFR signaling downregulation-responsive genes in cancer patients expressing low levels of TWIST1. NES, normalized enrichment score; FDR, false discovery rate. (D and E) EGF-upregulated signature genes expressed as a summed z-score for samples separated on the basis of TWIST1 (D) and miR-1 (E) expressions above median (TWIST1 High and miR-1 Low) or below median (TWIST1 Low and miR-1 High) in the MSKCC dataset. (F) Immunoblotting of cell extracts from RasB1 and PC3 cells following EGF treatment. (G) Morphology of RasB1 and PC3 cells following EGF treatment.
Supplemental Figure 2 from EGF Receptor Promotes Prostate Cancer Bone Metastasis by Downregulating miR-1 and Activating TWIST1
Authors: Chang Yung-Sheng , Chen Wei-Yu , Yin Juan Juan , Sheppard-Tillman Heather , Huang Jiaoti , Liu Yen-Nien
Published: April 2023

(A) Endogenous levels of miR-1 in a panel of prostate cancer cell lines. * vs. RasB1. (B) Relative EGFR expression levels in various prostate cancer cell lines. * vs. LNCap. (C) Cellular migration and invasion of LNCap and 22Rv1 cells following EGF treatment for 6 hours and then fixation and staining with a 0.5% crystal violet fixative solution. (D) Representative histological images of bone metastases in mice from RasB1/miR-1 (miR-1/EV), and EGFR-rescued RasB1/miR-1 (miR-1/EGFR) cells. Bone metastases are indicated by arrows and red dotted lines.
Fig. S14 from Feed-Forward Reciprocal Activation of PAFR and STAT3 Regulates Epithelial–Mesenchymal Transition in Non–Small Cell Lung Cancer
Authors: Chen Jie , Lan Tian , Zhang Weimin , Dong Lijia , Kang Nan , Zhang Shumin , Fu Ming , Liu Bing , Liu Kangtai , Zhan Qimin
Published: April 2023

Statistical analyses of PAFR, E-cadherin, N-cadherin, vimentin, snail, Zeb-1, pSrc, pJAK2, pStat3, or IL-6 in A549 and H460 tumors stably expressing shPAFR or their respectively control shRNA.
Supplemental Figure 1 from EGF Receptor Promotes Prostate Cancer Bone Metastasis by Downregulating miR-1 and Activating TWIST1
Authors: Chang Yung-Sheng , Chen Wei-Yu , Yin Juan Juan , Sheppard-Tillman Heather , Huang Jiaoti , Liu Yen-Nien
Published: April 2023

(A and B) GSEA showed enrichment of two prostate cancer datasets, MSKCC (A) and TCGA (B), with EGFR signaling downregulation-responsive genes in cancers expressing high levels of miR-1. NES, normalized enrichment score; FDR, false discovery rate. (C and D) Mean expression of miR-1 for signatures separated on the basis of up- and downregulated EGFR signaling-responsive genes in the MSKCC (C) and TCGA (D) datasets.
Fig. S13 from Feed-Forward Reciprocal Activation of PAFR and STAT3 Regulates Epithelial–Mesenchymal Transition in Non–Small Cell Lung Cancer
Authors: Chen Jie , Lan Tian , Zhang Weimin , Dong Lijia , Kang Nan , Zhang Shumin , Fu Ming , Liu Bing , Liu Kangtai , Zhan Qimin
Published: April 2023

Effects of PAFR depletion on EMT and Stat3 pathway of NSCLC cells in vivo.
Fig. S10 from Feed-Forward Reciprocal Activation of PAFR and STAT3 Regulates Epithelial–Mesenchymal Transition in Non–Small Cell Lung Cancer
Authors: Chen Jie , Lan Tian , Zhang Weimin , Dong Lijia , Kang Nan , Zhang Shumin , Fu Ming , Liu Bing , Liu Kangtai , Zhan Qimin
Published: April 2023

Evaluating the effects of shRNA vector, PAFR shRNA, Stat3 shRNA, or these shRNAs in the presence of 100 nM PAF on the mRNA level of IL-6 in A549 and H460 cells.
Supplementary Table S1 from B-Raf Inhibitors Induce Epithelial Differentiation in BRAF-Mutant Colorectal Cancer Cells
Authors: Herr Ricarda , Köhler Martin , Andrlová Hana , Weinberg Florian , Möller Yvonne , Halbach Sebastian , Lutz Lisa , Mastroianni Justin , Klose Martin , Bittermann Nicola , Kowar Silke , Zeiser Robert , Olayioye Monilola A. , Lassmann Silke , Busch Hauke , Boerries Melanie , Brummer Tilman
Published: April 2023

Supplementary Table S1. Key characteristics of the cell lines used in this study.
Supplementary Materials and Methods from B-Raf Inhibitors Induce Epithelial Differentiation in BRAF-Mutant Colorectal Cancer Cells
Authors: Herr Ricarda , Köhler Martin , Andrlová Hana , Weinberg Florian , Möller Yvonne , Halbach Sebastian , Lutz Lisa , Mastroianni Justin , Klose Martin , Bittermann Nicola , Kowar Silke , Zeiser Robert , Olayioye Monilola A. , Lassmann Silke , Busch Hauke , Boerries Melanie , Brummer Tilman
Published: April 2023

Supplementary Materials and Methods. Description of additional methods and procedures used in the study.
Supplementary Table S4 from Breast Cancer Cell–Derived GM-CSF Licenses Regulatory Th2 Induction by Plasmacytoid Predendritic Cells in Aggressive Disease Subtypes
Authors: Ghirelli Cristina , Reyal Fabien , Jeanmougin Marine , Zollinger Raphaël , Sirven Philémon , Michea Paula , Caux Christophe , Bendriss-Vermare Nathalie , Donnadieu Marie-Hélène , Caly Martial , Fourchotte Virginie , Vincent-Salomon Anne , Sigal-Zafrani Brigitte , Sastre-Garau Xavier , Soumelis Vassili
Published: April 2023

Supplementary Table S4. Cytokine measurements in digested unstimulated primary breast tumor (Unst) or tumors stimulated with anti-CD3/CD28 microbeads (αCD3/CD28).
Supplementary Figure and Table Legend from B-Raf Inhibitors Induce Epithelial Differentiation in BRAF-Mutant Colorectal Cancer Cells
Authors: Herr Ricarda , Köhler Martin , Andrlová Hana , Weinberg Florian , Möller Yvonne , Halbach Sebastian , Lutz Lisa , Mastroianni Justin , Klose Martin , Bittermann Nicola , Kowar Silke , Zeiser Robert , Olayioye Monilola A. , Lassmann Silke , Busch Hauke , Boerries Melanie , Brummer Tilman
Published: April 2023

Supplementary Figure and Table Legend. Legend for Supplementary Figures S1-S8 and Supplementary Tables S1-S4.
Supplementary Table S2 from Breast Cancer Cell–Derived GM-CSF Licenses Regulatory Th2 Induction by Plasmacytoid Predendritic Cells in Aggressive Disease Subtypes
Authors: Ghirelli Cristina , Reyal Fabien , Jeanmougin Marine , Zollinger Raphaël , Sirven Philémon , Michea Paula , Caux Christophe , Bendriss-Vermare Nathalie , Donnadieu Marie-Hélène , Caly Martial , Fourchotte Virginie , Vincent-Salomon Anne , Sigal-Zafrani Brigitte , Sastre-Garau Xavier , Soumelis Vassili
Published: April 2023

Supplementary Table S2. Clinical information of the patients included in the study.
Supplementary Methods from Twist1 Is a Key Regulator of Cancer-Associated Fibroblasts
Authors: Lee Keun-Woo , Yeo So-Young , Sung Chang Ohk , Kim Seok-Hyung
Published: April 2023

Supplementary methods
Supplementary Figure Legend from A Threshold Level of Intratumor CD8+ T-cell PD1 Expression Dictates Therapeutic Response to Anti-PD1
Authors: Ngiow Shin Foong , Young Arabella , Jacquelot Nicolas , Yamazaki Takahiro , Enot David , Zitvogel Laurence , Smyth Mark J.
Published: April 2023

Supplementary Figure Legend. Legends for Supplementary Figures S1-S8.
Supplementary Figure S1 from IDH1 Mutation Induces Reprogramming of Pyruvate Metabolism
Authors: Izquierdo-Garcia Jose L. , Viswanath Pavithra , Eriksson Pia , Cai Larry , Radoul Marina , Chaumeil Myriam M. , Blough Michael , Luchman H. Artee , Weiss Samuel , Cairncross J. Gregory , Phillips Joanna J. , Pieper Russell O. , Ronen Sabrina M.
Published: April 2023

Effect of 2-HG on cell proliferation of IDH1 wild-type cells for the U87 (A) and NHA (B) models.
Table S1 from Interleukin-6 Prevents the Initiation but Enhances the Progression of Lung Cancer
Authors: Qu Zhaoxia , Sun Fan , Zhou Jingjiao , Li Liwen , Shapiro Steven D. , Xiao Gutian
Published: April 2023

Antibodies used for IHC and IF in the study
Supplemental Figure Legends from Interleukin-6 Prevents the Initiation but Enhances the Progression of Lung Cancer
Authors: Qu Zhaoxia , Sun Fan , Zhou Jingjiao , Li Liwen , Shapiro Steven D. , Xiao Gutian
Published: April 2023

Figure legends for supplemental figures
Supplementary Table. S4 from Development of Lung Adenocarcinomas with Exclusive Dependence on Oncogene Fusions
Authors: Saito Motonobu , Shimada Yoko , Shiraishi Kouya , Sakamoto Hiromi , Tsuta Koji , Totsuka Hirohiko , Chiku Suenori , Ichikawa Hitoshi , Kato Mamoru , Watanabe Shun-ichi , Yoshida Teruhiko , Yokota Jun , Kohno Takashi
Published: April 2023

Supplementary Table. S4. Univariate and multivariate regression analysis of numbers of non-synonymous mutations per Mb and clinical characteristics between driver fusion, driver mutation and pan-negative cases
Figure S5 from Interleukin-6 Prevents the Initiation but Enhances the Progression of Lung Cancer
Authors: Qu Zhaoxia , Sun Fan , Zhou Jingjiao , Li Liwen , Shapiro Steven D. , Xiao Gutian
Published: April 2023

In vitro induction of lung tumor cell proliferation by IL-6.
Supplementary Table. S2 from Development of Lung Adenocarcinomas with Exclusive Dependence on Oncogene Fusions
Authors: Saito Motonobu , Shimada Yoko , Shiraishi Kouya , Sakamoto Hiromi , Tsuta Koji , Totsuka Hirohiko , Chiku Suenori , Ichikawa Hitoshi , Kato Mamoru , Watanabe Shun-ichi , Yoshida Teruhiko , Yokota Jun , Kohno Takashi
Published: April 2023

Supplementary Table. S2. Clinical and pathological characteristics of the 608 lung adenocarcinomas of the NCC cohort
Figure S3 from Interleukin-6 Prevents the Initiation but Enhances the Progression of Lung Cancer
Authors: Qu Zhaoxia , Sun Fan , Zhou Jingjiao , Li Liwen , Shapiro Steven D. , Xiao Gutian
Published: April 2023

In vitro suppression of lung epithelial cell apoptosis by IL-6 and IL-10.
Supplementary Table. S1 from Development of Lung Adenocarcinomas with Exclusive Dependence on Oncogene Fusions
Authors: Saito Motonobu , Shimada Yoko , Shiraishi Kouya , Sakamoto Hiromi , Tsuta Koji , Totsuka Hirohiko , Chiku Suenori , Ichikawa Hitoshi , Kato Mamoru , Watanabe Shun-ichi , Yoshida Teruhiko , Yokota Jun , Kohno Takashi
Published: April 2023

Supplementary Table. S1. Comparison of clinical and pathological characteristics between the NCC cohort and the study cohort
Supplementary Fig. S4 from Development of Lung Adenocarcinomas with Exclusive Dependence on Oncogene Fusions
Authors: Saito Motonobu , Shimada Yoko , Shiraishi Kouya , Sakamoto Hiromi , Tsuta Koji , Totsuka Hirohiko , Chiku Suenori , Ichikawa Hitoshi , Kato Mamoru , Watanabe Shun-ichi , Yoshida Teruhiko , Yokota Jun , Kohno Takashi
Published: April 2023

Supplementary Fig. S4. Infrequent occurrence of gene aberrations in fusion-positive LADCs in a US cohort
Supplementary Figures S1-S8 from Lung Tumor Suppressor GPRC5A Binds EGFR and Restrains Its Effector Signaling
Authors: Zhong Shuangshuang , Yin Huijing , Liao Yueling , Yao Feng , Li Qi , Zhang Jie , Jiao Huike , Zhao Yongxu , Xu Dongliang , Liu Shuli , Song Hongyong , Gao Yong , Liu Jingyi , Ma Lina , Pang Zhi , Yang Ruixu , Ding Chengyi , Sun Beibei , Lin Xiaofeng , Ye Xiaofeng , Guo Wenzheng , Han Baohui , Zhou Binhua P. , Chin Y. Eugene , Deng Jiong
Published: April 2023

Supplementary Figures S1-S8. HEK293T cells were co-transfected with the plasmids of GPRC5A-myc, or myc-tagged GPRC5A mutants (âˆ†C, âˆ†N, âˆ†7TM, and 7TM) as indicated ; Immunoblot was performed for p-EGFR (Y1068) and p-STAT3 (Y705) proteins from mouse lung tissues with the treatment as indicated ; IHC Staining for EGFR in the lung tissues of KO-NNK-12m (NNK-treated Gprc5a-/-mouse at age of 12 month) ; Representative pictures of IHC Staining for EGFR in two tumors (#282-1 and #282-2) identified in the same Gprc5a-/-mouse lung (#282) that was treated with NNK at age of 2 month and was sacrificed at age of 12 months (Gprc5a-ko-NNK-12m) ; Images of IHC Staining with normal rabbit IgG (upper) and anti-EGFR (bottom) in the tumor tissues (left) and the epithelium of small and terminal bronchioles (S/TB) of the lung from Gprc5a-ko mice treated with NNK at age of 12 months ; IHC Staining for p-STAT3 (Y705) in the lung tissues of KO-NNK-12m (NNK-treated Gprc5a-/- mouse at age of 12 month) ; Image of IHC Staining for Ki67 in the lung tissue of Gprc5a-ko-NNK-12m mouse which contains both the normal epithelium of small and terminal bronchioles (S/TB) (upper left) or tumor (bottom right) ; GPRC5A locus is located in the 12p12.3-p13 region which is frequently lost human NSCLC .
Supplementary Figure 2 from MyD88-Dependent Signaling Decreases the Antitumor Efficacy of Epidermal Growth Factor Receptor Inhibition in Head and Neck Cancer Cells
Authors: Koch Adam T. , Love-Homan Laurie , Espinosa-Cotton Madelyn , Stanam Aditya , Simons Andrean L.
Published: April 2023

Transient siRNA Knockdown of IL1R1 reduces erlotinib-induced IL-6 secretion.
Figure S4 from Fas Ligand Deficiency Impairs Tumor Immunity by Promoting an Accumulation of Monocytic Myeloid-Derived Suppressor Cells
Authors: Peyvandi Sanam , Buart Stéphanie , Samah Boubekeur , Vétizou Marie , Zhang Yanyan , Durrieu Ludovic , Polrot Mélanie , Chouaib Salem , Benihoud Karim , Louache Fawzia , Karray Saoussen
Published: April 2023

Figure S4. Arginase enzymatic activity evaluated in sorted MDSCs in the absence and the presence of GM+CM, n = 6-8 per group.
Supplemental Movie S4- FLIP assay from PLAC8 Localizes to the Inner Plasma Membrane of Pancreatic Cancer Cells and Regulates Cell Growth and Disease Progression through Critical Cell-Cycle Regulatory Pathways
Authors: Kaistha Brajesh P. , Lorenz Holger , Schmidt Harald , Sipos Bence , Pawlak Michael , Gierke Berthold , Kreider Ramona , Lankat-Buttgereit Brigitte , Sauer Melanie , Fiedler Lisa , Krattenmacher Anja , Geisel Bettina , Kraus Johann M. , Frese Kristopher K. , Kelkenberg Sabine , Giese Nathalia A. , Kestler Hans A. , Gress Thomas M. , Buchholz Malte
Published: April 2023

S2-007 cells were transfected with Plac8-CFP (left panel) or YFP (right panel). ROIs (white outlines) in individual cells were repeatedly photobleached using high-power laser intensities and fluorescent signals recorded in regular intervals for 20 min of total duration.
Supplemental Movie S3- FRAP assay from PLAC8 Localizes to the Inner Plasma Membrane of Pancreatic Cancer Cells and Regulates Cell Growth and Disease Progression through Critical Cell-Cycle Regulatory Pathways
Authors: Kaistha Brajesh P. , Lorenz Holger , Schmidt Harald , Sipos Bence , Pawlak Michael , Gierke Berthold , Kreider Ramona , Lankat-Buttgereit Brigitte , Sauer Melanie , Fiedler Lisa , Krattenmacher Anja , Geisel Bettina , Kraus Johann M. , Frese Kristopher K. , Kelkenberg Sabine , Giese Nathalia A. , Kestler Hans A. , Gress Thomas M. , Buchholz Malte
Published: April 2023

In a Plac8-YFP-transfected S2-007 cell, a region of interest (ROI) covering a Plac8-positive membrane area (white rectangle) was photobleached using high-power laser intensities. Recovery of fluorescence in the ROI was recorded and quantified over time. Fluorescence recovery was complete within 100 s. Scale bar: 10 µm.
Supplemental Legends from PLAC8 Localizes to the Inner Plasma Membrane of Pancreatic Cancer Cells and Regulates Cell Growth and Disease Progression through Critical Cell-Cycle Regulatory Pathways
Authors: Kaistha Brajesh P. , Lorenz Holger , Schmidt Harald , Sipos Bence , Pawlak Michael , Gierke Berthold , Kreider Ramona , Lankat-Buttgereit Brigitte , Sauer Melanie , Fiedler Lisa , Krattenmacher Anja , Geisel Bettina , Kraus Johann M. , Frese Kristopher K. , Kelkenberg Sabine , Giese Nathalia A. , Kestler Hans A. , Gress Thomas M. , Buchholz Malte
Published: April 2023

Legends for Supplementary Tables, Movies, and Figures.
Supplementary Figure S7 from Long Noncoding RNA HULC Modulates Abnormal Lipid Metabolism in Hepatoma Cells through an miR-9–Mediated RXRA Signaling Pathway
Authors: Cui Ming , Xiao Zelin , Wang Yue , Zheng Minying , Song Tianqiang , Cai Xiaoli , Sun Baodi , Ye Lihong , Zhang Xiaodong
Published: April 2023

Supplementary Figure S7. HULC-modulated abnormal lipid metabolism facilitates the tumor growth in vivo, Related to Figure 7.
Supplementary Figure S6 from Long Noncoding RNA HULC Modulates Abnormal Lipid Metabolism in Hepatoma Cells through an miR-9–Mediated RXRA Signaling Pathway
Authors: Cui Ming , Xiao Zelin , Wang Yue , Zheng Minying , Song Tianqiang , Cai Xiaoli , Sun Baodi , Ye Lihong , Zhang Xiaodong
Published: April 2023

Supplementary Figure S6. HULC disrupts the lipid metabolism of hepatoma cells through miR-9/PPARA/ACSL1 signaling in vitro, Related to Figure 6.
Supplementary Tables S1-S9 from A Novel MIF Signaling Pathway Drives the Malignant Character of Pancreatic Cancer by Targeting NR3C2
Authors: Yang Shouhui , He Peijun , Wang Jian , Schetter Aaron , Tang Wei , Funamizu Naotake , Yanaga Katsuhiko , Uwagawa Tadashi , Satoskar Abhay R. , Gaedcke Jochen , Bernhardt Markus , Ghadimi B. Michael , Gaida Matthias M. , Bergmann Frank , Werner Jens , Ried Thomas , Hanna Nader , Alexander H. Richard , Hussain S. Perwez
Published: April 2023

Table S1. Characteristics of Patients' Population (Test cohort, N=69). Table S2. Characteristics of Patients' Population (Validation Cohort-1, N=41). Table S3. Characteristics of Patients' Population (Validation Cohort-2, N=64). Table S4. Clinicopathologic features of TCGA cohort. Table S5. Characteristics of tissue microarray cohort (Validation cohort-3, N=173) Table S6. Differentially expressed miRNAs in MIF-High and MIF-Low PDAC cases and their association with survival (cox regression). Table S7. miR-301b candidate target gene associated with survival by Cox regression and Kaplan-Meier analyses. Table S8. qRT-PCR probes and primer sequences for plasmid construction. Table S9. Antibodies information
Supplementary Information from A Novel MIF Signaling Pathway Drives the Malignant Character of Pancreatic Cancer by Targeting NR3C2
Authors: Yang Shouhui , He Peijun , Wang Jian , Schetter Aaron , Tang Wei , Funamizu Naotake , Yanaga Katsuhiko , Uwagawa Tadashi , Satoskar Abhay R. , Gaedcke Jochen , Bernhardt Markus , Ghadimi B. Michael , Gaida Matthias M. , Bergmann Frank , Werner Jens , Ried Thomas , Hanna Nader , Alexander H. Richard , Hussain S. Perwez
Published: April 2023

Supplementary Materials and Methods and Supplementary Figure Legends
Supplementary Table S1 from Elevated Expression of the C-Type Lectin CD93 in the Glioblastoma Vasculature Regulates Cytoskeletal Rearrangements That Enhance Vessel Function and Reduce Host Survival
Authors: Langenkamp Elise , Zhang Lei , Lugano Roberta , Huang Hua , Elhassan Tamador Elsir Abu , Georganaki Maria , Bazzar Wesam , Lööf Johan , Trendelenburg George , Essand Magnus , Pontén Fredrik , Smits Anja , Dimberg Anna
Published: April 2023

Semi-quantitative scoring of CD93 expression in 236 human glioma biopsies.
Supplementary Figure legends from TNF Receptor-2 Facilitates an Immunosuppressive Microenvironment in the Liver to Promote the Colonization and Growth of Hepatic Metastases
Authors: Ham Boram , Wang Ni , D'Costa Zarina , Fernandez Maria Celia , Bourdeau France , Auguste Patrick , Illemann Martin , Eefsen Rikke Loevendahl , Høyer-Hansen Gunilla , Vainer Ben , Evrard Maximilien , Gao Zu-Hua , Brodt Pnina
Published: April 2023

Legends for 8 supplementary figures
Figure S5 from Cell Cycle–Dependent Mechanisms Underlie Vincristine-Induced Death of Primary Acute Lymphoblastic Leukemia Cells
Authors: Kothari Anisha , Hittelman Walter N. , Chambers Timothy C.
Published: April 2023

Supplementary Figure 5
Suppl. Movie 3 from LIM Kinase Inhibitor Pyr1 Reduces the Growth and Metastatic Load of Breast Cancers
Authors: Prunier Chloé , Josserand Véronique , Vollaire Julien , Beerling Evelyne , Petropoulos Christos , Destaing Olivier , Montemagno Christopher , Hurbin Amandine , Prudent Renaud , de Koning Leanne , Kapur Reuben , Cohen Pascale A. , Albiges-Rizo Corinne , Coll Jean-Luc , van Rheenen Jacco , Billaud Marc , Lafanechère Laurence
Published: April 2023

MDA-MB-231 Dendra2 tumors followed by intravital microscopy after 8 days of Pyr1 treatment
Supplementary Figure 1 from The EGF Receptor Promotes the Malignant Potential of Glioma by Regulating Amino Acid Transport System xc(—)
Authors: Tsuchihashi Kenji , Okazaki Shogo , Ohmura Mitsuyo , Ishikawa Miyuki , Sampetrean Oltea , Onishi Nobuyuki , Wakimoto Hiroaki , Yoshikawa Momoko , Seishima Ryo , Iwasaki Yoshimi , Morikawa Takayuki , Abe Shinya , Takao Ayumi , Shimizu Misato , Masuko Takashi , Nagane Motoo , Furnari Frank B. , Akiyama Tetsu , Suematsu Makoto , Baba Eishi , Akashi Koichi , Saya Hideyuki , Nagano Osamu
Published: April 2023

EGFR interacts with the central portion of xCT and thereby promotes surface expression of xCT.
Supplemental Table S9 from The Distinctive Mutational Spectra of Polyomavirus-Negative Merkel Cell Carcinoma
Authors: Harms Paul William , Vats Pankaj , Verhaegen Monique Elise , Robinson Dan R. , Wu Yi-Mi , Dhanasekaran Saravana Mohan , Palanisamy Nallasivam , Siddiqui Javed , Cao Xuhong , Su Fengyun , Wang Rui , Xiao Hong , Kunju Lakshmi P. , Mehra Rohit , Tomlins Scott A. , Fullen Douglas Randall , Bichakjian Christopher Keram , Johnson Timothy M. , Dlugosz Andrzej Antoni , Chinnaiyan Arul M.
Published: April 2023

Supplemental Table S9. Fusion calls in Merkel cell carcinoma by transcriptome sequencing
Supplemental Table S2 from The Distinctive Mutational Spectra of Polyomavirus-Negative Merkel Cell Carcinoma
Authors: Harms Paul William , Vats Pankaj , Verhaegen Monique Elise , Robinson Dan R. , Wu Yi-Mi , Dhanasekaran Saravana Mohan , Palanisamy Nallasivam , Siddiqui Javed , Cao Xuhong , Su Fengyun , Wang Rui , Xiao Hong , Kunju Lakshmi P. , Mehra Rohit , Tomlins Scott A. , Fullen Douglas Randall , Bichakjian Christopher Keram , Johnson Timothy M. , Dlugosz Andrzej Antoni , Chinnaiyan Arul M.
Published: April 2023

Supplemental Table S2. Quality metrics for sequencing libraries
Supplementary Fig. S3 from Combining miR-10b–Targeted Nanotherapy with Low-Dose Doxorubicin Elicits Durable Regressions of Metastatic Breast Cancer
Authors: Yoo Byunghee , Kavishwar Amol , Ross Alana , Wang Ping , Tabassum Doris P. , Polyak Kornelia , Barteneva Natalia , Petkova Victoria , Pantazopoulos Pamela , Tena Aseda , Moore Anna , Medarova Zdravka
Published: April 2023

Supplementary Fig. S3. Effect of miR-10b knock-out on the phenotype of human metastatic breast cancer cells.
Supplementary Methods and References from Noninvasive Quantification of 2-Hydroxyglutarate in Human Gliomas with IDH1 and IDH2 Mutations
Authors: Emir Uzay E. , Larkin Sarah J. , de Pennington Nick , Voets Natalie , Plaha Puneet , Stacey Richard , Al-Qahtani Khalid , Mccullagh James , Schofield Christopher J. , Clare Stuart , Jezzard Peter , Cadoux-Hudson Tom , Ansorge Olaf
Published: April 2023

Description of additional methods and procedures used in the study. Also includes Supplementary References.
Supplementary Figure S2 from Noninvasive Quantification of 2-Hydroxyglutarate in Human Gliomas with IDH1 and IDH2 Mutations
Authors: Emir Uzay E. , Larkin Sarah J. , de Pennington Nick , Voets Natalie , Plaha Puneet , Stacey Richard , Al-Qahtani Khalid , Mccullagh James , Schofield Christopher J. , Clare Stuart , Jezzard Peter , Cadoux-Hudson Tom , Ansorge Olaf
Published: April 2023

Amplitudes of 2-hydroxyglutarate (2-HG) signal for density matrix simulation of pulse acquire and semi-LASER at TE = 110 ms (TE1 =11 ms, TE2 = 65 ms and TE3 = 34 ms) acquisitions.
Supplementary Tables S1-S12 from Hepatocyte Growth Factor/cMET Pathway Activation Enhances Cancer Hallmarks in Adrenocortical Carcinoma
Authors: Phan Liem M. , Fuentes-Mattei Enrique , Wu Weixin , Velazquez-Torres Guermarie , Sircar Kanishka , Wood Christopher G. , Hai Tao , Jimenez Camilo , Cote Gilbert J. , Ozsari Levent , Hofmann Marie-Claude , Zheng Siyuan , Verhaak Roeland , Pagliaro Lance , Cortez Maria Angelica , Lee Mong-Hong , Yeung Sai-Ching J. , Habra Mouhammed Amir
Published: April 2023

Basic patients characteristics of the cohort used for serum HGF measurements ; Patients characteristics of second TMA ; Genes with significantly (P {less than or equal to} 0.05, absolute value of log ratio > 0.1) changed expression in tumors from ACC patients (dataset GSE10927) relative to expression in normal adrenocortical tissues ; Biological processes Significantly (P<0.05) changed in tumors from ACC patients with high MET expression relative to tumors with low MET expression (dataset GSE10927) as presented in Figure 2a ; Genes significantly (P {less than or equal to} 0.05, absolute value of log ratio > 0.1) changed in tumors from ACC patients with high MET expression compared to those with low MET expression (dataset GSE10927) ; Gene set enrichment analysis of ACC patients' cohort for genes related to cell proliferation (dataset GSE10927) ; Gene set enrichment analysis of ACC patients' cohort for genes related to the negative regulation of cell apoptosis (dataset GSE10927) ; Gene set enrichment analysis of ACC patients' cohort for genes related to cell proliferation (dataset GSEA49278) ; Gene set enrichment analysis of ACC patients' cohort for genes related to the negative regulation of cell apoptosis (dataset GSEA49278) ; Drug metabolism-related genes with significantly (P {less than or equal to} 0.05, absolute value of log ratio > 0.1) changed expression in tumors from ACC patients (dataset GSE10927) with high MET expression relative to those with low MET expression ; Gene set enrichment analysis detail of ACC patients' cohort for genes associated with resistance and metabolism of cisplatin, etoposide and doxorubicin (dataset GSEA10927) ; Gene set enrichment analysis detail of ACC patients' cohort for genes associated with resistance and metabolism of cisplatin, etoposide and doxorubicin (dataset GSEA49278) .
Supplemental Figures S1-7, Tables S1-3, and Materials and Methods from Oncogenic G Protein GNAQ Induces Uveal Melanoma and Intravasation in Mice
Authors: Huang Jenny Li-Ying , Urtatiz Oscar , Van Raamsdonk Catherine D.
Published: April 2023

Supplemental Figures S1-7, Tables S1-3, and Materials and Methods. Figure S1. Body weight of 3 month old mice. Figure S2. Melanocytic proliferation in the skin of Rosa26-fs-GNAQQ209L/+; Mitf-cre/+ animals. Figure S3. Loss of hair pigmentation in 5 month-old Rosa26-fs-GNAQQ209L/+; Mitf-cre/+ mice. Figure S4. Gross eye phenotypes in study mice. Figure S5. RNA expression from the Rosa26 promoter compared to the Gnaq promoter in mouse melanocytes. Figure S6. Additional controls for Rosa26-fs-GNAQQ209L/+; Tyr-creER/+ experiments. Figure S7. Hyper-pigmentation of meninges in trunk. Table S1. Efficiency of Mitf-cre at P40. Table S2. Individual results of auditory brainstem response (ABR) testing. Table S3. Efficiency of Tyrosinase-creER using a 5 day tamoxifen treatment in adult mice. Supplemental Materials and Methods: GNAQ/Gnaq Pyrosequencing primers.
Supplemental Table S1 from Generation of a Mouse Model of Atypical Teratoid/Rhabdoid Tumor of the Central Nervous System through Combined Deletion of Snf5 and p53
Authors: Ng Jessica M.Y. , Martinez Daniel , Marsh Eric D. , Zhang Zhe , Rappaport Eric , Santi Mariarita , Curran Tom
Published: April 2023

Primer sequences of qRT-PCR.
Supplemental Figure S4 from Generation of a Mouse Model of Atypical Teratoid/Rhabdoid Tumor of the Central Nervous System through Combined Deletion of Snf5 and p53
Authors: Ng Jessica M.Y. , Martinez Daniel , Marsh Eric D. , Zhang Zhe , Rappaport Eric , Santi Mariarita , Curran Tom
Published: April 2023

Olig 2 is significantly reduced in Snf5F/F p53L/L GFAP-Cre adult mutant mice.
Table S3 from Disseminated Tumor Cells Persist in the Bone Marrow of Breast Cancer Patients through Sustained Activation of the Unfolded Protein Response
Authors: Bartkowiak Kai , Kwiatkowski Marcel , Buck Friedrich , Gorges Tobias M. , Nilse Lars , Assmann Volker , Andreas Antje , Müller Volkmar , Wikman Harriet , Riethdorf Sabine , Schlüter Hartmut , Pantel Klaus
Published: April 2023

SILAC mass spectra overview
Supplemental Table S1 from Akt–Girdin Signaling in Cancer-Associated Fibroblasts Contributes to Tumor Progression
Authors: Yamamura Yumiko , Asai Naoya , Enomoto Atsushi , Kato Takuya , Mii Shinji , Kondo Yuji , Ushida Kaori , Niimi Kaoru , Tsunoda Nobuyuki , Nagino Masato , Ichihara Shu , Furukawa Koichi , Maeda Kengo , Murohara Toyoaki , Takahashi Masahide
Published: April 2023

Clinicopathological features of 86 patients with invasive breast cancer.
Supplemental Figure 1 from EF Hand Protein IBA2 Promotes Cell Proliferation in Breast Cancers via Transcriptional Control of Cyclin D1
Authors: Zhang Ying , Wang Shuling , Li Lingsong
Published: April 2023

Supplemental Figure 1
Supplementary Figure 4 from BAFF and APRIL from Activin A–Treated Dendritic Cells Upregulate the Antitumor Efficacy of Dendritic Cells In Vivo
Authors: Shurin Michael R. , Ma Yang , Keskinov Anton A. , Zhao Ruijing , Lokshin Anna , Agassandian Marianna , Shurin Galina V.
Published: April 2023

Recombinant BAFF, but not recombinant APRIL, up-regulates survival of T-cells.
supplementary methods from Comparative Cistromics Reveals Genomic Cross-talk between FOXA1 and ERα in Tamoxifen-Associated Endometrial Carcinomas
Authors: Droog Marjolein , Nevedomskaya Ekaterina , Kim Yongsoo , Severson Tesa , Flach Koen D. , Opdam Mark , Schuurman Karianne , Gradowska Patrycja , Hauptmann Michael , Dackus Gwen , Hollema Harry , Mourits Marian J. , Nederlof Petra , van Boven Hester , Linn Sabine C. , Wessels Lodewyk , van Leeuwen Flora E. , Zwart Wilbert
Published: April 2023

supplementary methods
Table S8 from Comparative Cistromics Reveals Genomic Cross-talk between FOXA1 and ERα in Tamoxifen-Associated Endometrial Carcinomas
Authors: Droog Marjolein , Nevedomskaya Ekaterina , Kim Yongsoo , Severson Tesa , Flach Koen D. , Opdam Mark , Schuurman Karianne , Gradowska Patrycja , Hauptmann Michael , Dackus Gwen , Hollema Harry , Mourits Marian J. , Nederlof Petra , van Boven Hester , Linn Sabine C. , Wessels Lodewyk , van Leeuwen Flora E. , Zwart Wilbert
Published: April 2023

Ingenuity Pathway Analysis on genes with ERalpha, FOXA1 or both in the gene body or within 20 kb upstream from the Transcriptional Start Site.
Supplemental Figure 5 from BAFF and APRIL from Activin A–Treated Dendritic Cells Upregulate the Antitumor Efficacy of Dendritic Cells In Vivo
Authors: Shurin Michael R. , Ma Yang , Keskinov Anton A. , Zhao Ruijing , Lokshin Anna , Agassandian Marianna , Shurin Galina V.
Published: April 2023

DC-derived BAFF protects T-cells from activation-induced cell death.
Table S7 from Comparative Cistromics Reveals Genomic Cross-talk between FOXA1 and ERα in Tamoxifen-Associated Endometrial Carcinomas
Authors: Droog Marjolein , Nevedomskaya Ekaterina , Kim Yongsoo , Severson Tesa , Flach Koen D. , Opdam Mark , Schuurman Karianne , Gradowska Patrycja , Hauptmann Michael , Dackus Gwen , Hollema Harry , Mourits Marian J. , Nederlof Petra , van Boven Hester , Linn Sabine C. , Wessels Lodewyk , van Leeuwen Flora E. , Zwart Wilbert
Published: April 2023

Primer sequences corresponding with supplemental figure S5.
Table S6 from Comparative Cistromics Reveals Genomic Cross-talk between FOXA1 and ERα in Tamoxifen-Associated Endometrial Carcinomas
Authors: Droog Marjolein , Nevedomskaya Ekaterina , Kim Yongsoo , Severson Tesa , Flach Koen D. , Opdam Mark , Schuurman Karianne , Gradowska Patrycja , Hauptmann Michael , Dackus Gwen , Hollema Harry , Mourits Marian J. , Nederlof Petra , van Boven Hester , Linn Sabine C. , Wessels Lodewyk , van Leeuwen Flora E. , Zwart Wilbert
Published: April 2023

ChIP-seq read count and mapped reads of endometrial tumors.
Supplemental Figure 3 from SOX4 Is Essential for Prostate Tumorigenesis Initiated by PTEN Ablation
Authors: Bilir Birdal , Osunkoya Adeboye O. , Wiles W. Guy , Sannigrahi Soma , Lefebvre Veronique , Metzger Daniel , Spyropoulos Demetri D. , Martin W. David , Moreno Carlos S.
Published: April 2023

Supplemental Figure 3 Figure S3. Low power H&E images of wild-type, PTEN-/-, and PTEN-/-/SOX4-/- prostates.
Table S2 from Comparative Cistromics Reveals Genomic Cross-talk between FOXA1 and ERα in Tamoxifen-Associated Endometrial Carcinomas
Authors: Droog Marjolein , Nevedomskaya Ekaterina , Kim Yongsoo , Severson Tesa , Flach Koen D. , Opdam Mark , Schuurman Karianne , Gradowska Patrycja , Hauptmann Michael , Dackus Gwen , Hollema Harry , Mourits Marian J. , Nederlof Petra , van Boven Hester , Linn Sabine C. , Wessels Lodewyk , van Leeuwen Flora E. , Zwart Wilbert
Published: April 2023

Patient characteristics of endometrioid adenocarcinomas used for ChIP-seq.
Supplementary Figure 6 from Activation of Hematopoietic Stem/Progenitor Cells Promotes Immunosuppression Within the Pre–metastatic Niche
Authors: Giles Amber Jin , Reid Caitlin Marie , Evans Justin DeWayne , Murgai Meera , Vicioso Yorleny , Highfill Steven Lorenz , Kasai Miki , Vahdat Linda , Mackall Crystal Lee , Lyden David , Wexler Leonard , Kaplan Rosandra Natasha
Published: April 2023

Ex vivo tumor-mediated bone marrow expansion
Figure S4 from Comparative Cistromics Reveals Genomic Cross-talk between FOXA1 and ERα in Tamoxifen-Associated Endometrial Carcinomas
Authors: Droog Marjolein , Nevedomskaya Ekaterina , Kim Yongsoo , Severson Tesa , Flach Koen D. , Opdam Mark , Schuurman Karianne , Gradowska Patrycja , Hauptmann Michael , Dackus Gwen , Hollema Harry , Mourits Marian J. , Nederlof Petra , van Boven Hester , Linn Sabine C. , Wessels Lodewyk , van Leeuwen Flora E. , Zwart Wilbert
Published: April 2023

Average normalized ERalpha ChIP-seq signal of endometrial and breast cancer specimens.
Supplementary Figure 3 from Activation of Hematopoietic Stem/Progenitor Cells Promotes Immunosuppression Within the Pre–metastatic Niche
Authors: Giles Amber Jin , Reid Caitlin Marie , Evans Justin DeWayne , Murgai Meera , Vicioso Yorleny , Highfill Steven Lorenz , Kasai Miki , Vahdat Linda , Mackall Crystal Lee , Lyden David , Wexler Leonard , Kaplan Rosandra Natasha
Published: April 2023

Myeloid-derived suppressor cells localize with spontaneous metastases
Supplementary Figure 1 from Activation of Hematopoietic Stem/Progenitor Cells Promotes Immunosuppression Within the Pre–metastatic Niche
Authors: Giles Amber Jin , Reid Caitlin Marie , Evans Justin DeWayne , Murgai Meera , Vicioso Yorleny , Highfill Steven Lorenz , Kasai Miki , Vahdat Linda , Mackall Crystal Lee , Lyden David , Wexler Leonard , Kaplan Rosandra Natasha
Published: April 2023

Growth and metastatic timeline of E0771 BCA and M3-9-M ERMS
Supplementary Figures 1 through 5 and Supplementary Figure Legends from p53 Loss in MYC-Driven Neuroblastoma Leads to Metabolic Adaptations Supporting Radioresistance
Authors: Yogev Orli , Barker Karen , Sikka Arti , Almeida Gilberto S. , Hallsworth Albert , Smith Laura M. , Jamin Yann , Ruddle Ruth , Koers Alexander , Webber Hannah T. , Raynaud Florence I. , Popov Sergey , Jones Chris , Petrie Kevin , Robinson Simon P. , Keun Hector C. , Chesler Louis
Published: April 2023

Supplementary Figure 1. The p53 pathway is functional in Th-MYCN neuroblastomas. Supplementary Figure 2. Immunohistochemical analysis of Th-MYCN mice. Supplementary Figure 3. Restoration of p53 has no effect on tumor growth rate or penetration in Th-MYCN/Trp53KI/KI mice. Supplementary Figure 4. Th-MYCN/Trp53KI/KI pups display increased percentage of neoplastic islands compared to Th-MYCN/Trp53WT/WT pups. Supplementary Figure 5. Figure S5 Th-MYCN/Trp53WT/WT and Th-MYCN/Trp53KI/K tumors are similar in their basal DNA damage levels.