bluuebunny/crossref_metadata_2025 huggingface dataset:
Investigating Changes in pH and Soluble Solids Content of Potato during the Storage by Electronic Nose and Vis/NIR Spectroscopy
Authors: Khorramifar Ali , Sharabiani Vali Rasooli , Karami Hamed , Kisalaei Asma , Lozano Jesús , Rusinek Robert , Gancarz Marek
Published: December 2022

Potato is an important agricultural product, ranked as the fourth most common product in the human diet. Potato can be consumed in various forms. As customers expect safe and high-quality products, precise and rapid determination of the quality and composition of potatoes is of crucial significance. The quality of potatoes may alter during the storage period due to various phenomena. Soluble solids content (SSC) and pH are among the quality parameters experiencing alteration during the storage process. This study is thus aimed to assess the variations in SSC and pH during the storage of potatoes using an electronic nose and Vis/NIR spectroscopic techniques with the help of prediction models including partial least squares (PLS), multiple linear regression (MLR), principal component regression (PCR), support vector regression (SVR) and an artificial neural network (ANN). The variations in the SSC and pH are ascending and significant. The results also indicate that the SVR model in the electronic nose has the highest prediction accuracy for the SSC and pH (81, and 92%, respectively). The artificial neural network also managed to predict the SSC and pH at accuracies of 83 and 94%, respectively. SVR method shows the lowest accuracy in Vis/NIR spectroscopy while the PLS model exhibits the best performance in the prediction of the SSC and pH with respective precision of 89 and 93% through the median filter method. The accuracy of the ANN was 85 and 90% in the prediction of the SSC and pH, respectively.
Modeling Tool for Studying the Influence of Operating Conditions on the Enzymatic Hydrolysis of Milk Proteins
Authors: Valencia Pedro , Espinoza Karen , Astudillo-Castro Carolina , Salazar Fernando
Published: December 2022

Systematic modeling of the enzymatic hydrolysis of milk proteins is needed to assist the study and production of partially hydrolyzed milk. The enzymatic hydrolysis of milk proteins was characterized and evaluated as a function of the temperature and protease concentration using Alcalase, Neutrase and Protamex. Modeling was based on the combination of two empirical models formed by a logarithmic and a polynomial equation to correlate the kinetic constants and the operating conditions. The logarithmic equation fitted with high accuracy to the experimental hydrolysis curves with the three proteases (R2 > 0.99). The kinetic constants were correlated with the operating conditions (R2 > 0.97) using polynomial equations. The temperature and protease concentration significantly affected the initial rate of hydrolysis, i.e., the kinetic constant a, while the kinetic constant b was not significantly affected. The values for the kinetic constant a were predicted according to the operating conditions and they were strongly correlated with the experimental data (R2 = 0.95). The model allowed for a high-quality prediction of the hydrolysis curves of milk proteins. This modeling tool can be used in future research to test the correlation between the degree of hydrolysis and the functional properties of milk hydrolysates.
Considering Two Aspects of Fish Welfare on African Catfish (Clarias gariepinus) Fillet throughout Postmortem Condition: Efficiency and Mechanisms
Authors: Hematyar Nima , Imentai Aiman , Křišťan Jiří , Gorakh Waghmare Swapnil , Policar Tomáš
Published: December 2022

Knowledge about fish welfare and its impact on fish fillet quality is still insufficient. Therefore, the influence of two aspects of fish welfare (slaughtering method: bled and unbled fish; fish stock densities: 90, 120, and 150 kg·m−3) on African catfish fillet quality during postmortem conditions was investigated. The aim of study was to determine (i) the efficiency of bleeding on oxidation progress and (ii) the influence of stock density on fillet quality. Sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS–PAGE) showed a higher protein loss in the unbled than in the bled groups, especially in the heavy myosin chain (MHC) band. However, density did not show any influence on protein profile. Western blot analysis showed fewer oxidized carbonyls in the bled than in the unbled groups; higher oxidation development, microbial growth, and lower hardness were observed in unbled fillets. Additionally, hardness was higher at 90 and 120 kg·m−3 densities in bled fillet compared to 150 kg·m−3. The first three days of storage showed a higher oxidation rate in unbled fillets than in bled fillets, confirming the contribution of hemoglobin to oxidation development with different mechanisms of protein oxidation. The obtained results revealed the same fillet quality in all aspects at either 90 or 120 (kg·m−3) stock densities, which would suggest 120 kg·m−3 for the fishery industry. However, higher stocking density in this study would not be appropriate for fish welfare.
Bayesian Fusion Model Enhanced Codfish Classification Using Near Infrared and Raman Spectrum
Authors: Xu Yi , Koidis Anastasios , Tian Xingguo , Xu Sai , Xu Xiaoyan , Wei Xiaoqun , Jiang Aimin , Lei Hongtao
Published: December 2022

In this study, a Bayesian-based decision fusion technique was developed for the first time to quickly and non-destructively identify codfish using near infrared (NIRS) and Raman spectroscopy (RS). NIRS and RS spectra from 320 codfish samples were collected, and separate partial least squares discriminant analysis (PLS-DA) models were developed to establish the relationship between the raw data and cod identity for each spectral technique. Three decision fusion methods: decision fusion, data layer or feature layer, were tested and compared. The decision fusion model based on the Bayesian algorithm (NIRS-RS-B) was developed on the optimal discrimination features of NIRS and RS data (NIRS-RS) extracted by the PLS-DA method whereas the other fusion models followed conventional, non-Bayesian approaches. The Bayesian model showed enhanced classification metrics (92% sensitivity, 98% specificity, 98% accuracy) that were significantly superior to those demonstrated by any of other two spectroscopic methods (NIRS, RS) and the two data fusion methods (data layer fused, NIRS-RS-D, or feature layer fused, NIRS-RS-F). This novel proposed approach can provide an alternative classification for codfish and potentially other food speciation cases.
Protein Characteristics and Bioactivity of Fish Protein Hydrolysates from Tra Catfish (Pangasius hypophthalmus) Side Stream Isolates
Authors: Nguyen Hang Thi , Bao Huynh Nguyen Duy , Dang Huong Thi Thu , Tómasson Tumi , Arason Sigurjón , Gudjónsdóttir María
Published: December 2022

Enzymatic hydrolysis is a novel method to recover highly potent bioactive fish protein hydrolysates (FPHs) from fish processing side-streams. The common way of producing FPHs directly from fish side-streams may be inappropriate due to the excess of lipids and pro-oxidants, especially in lipid-rich streams, as obtained from Tra catfish. This study aimed to optimise the hydrolysis conditions for a commercial enzyme (Alcalase® 2.4 L) (enzyme concentrate, temperature, and time) in FPH production from the fish protein isolate obtained from Tra catfish dark muscle (DM-FPI) using the pH-shift method. The degree of hydrolysis (DH), protein recovery (PR), and antioxidant properties, including DPPH radical scavenging activity (DPPH-RSA) and total reducing power capacity (TRPC), were measured to evaluate the effects of the hydrolysis conditions on the FPHs. Optimal hydrolysis was obtained at an enzyme/substrate protein ratio of 3% (v/w) and a hydrolysis temperature of 50 °C for 3 h. The FPHs obtained from different substrates, including DM-FPI, abdominal cut-off (ACO) FPI, and head and backbone blend (HBB) FPI, had similar DHs under these optimum conditions, ranging from 22.5% to 24.0%. However, the FPH obtained from abdominal cut-off isolate (ACO-FPH) showed the highest PR of 81.5 ± 4.3% and the highest antioxidant properties, with a DPPH-RSA of 86.1 ± 1.6% and a TRPC of 6.4 ± 0.4 equivalent mg vitamin C/g protein. The resulting FPHs present a natural source of antioxidants with great potential for food applications, especially the ACO-FPH. In addition, all FPHs had excellent amino acid profiles, indicating strong potential for their use as supplements. Tra catfish protein-rich side-streams can thus be processed into high-value bioactive FPHs using Alcalase for human consumption.
Effect of Oxidative Modification by Peroxyl Radical on the Characterization and Identification of Oxidative Aggregates and In Vitro Digestion Products of Walnut (Juglans regia L.) Protein Isolates
Authors: Zhao Jinjin , Han Miaomiao , Wu Qingzhi , Mao Xiaoying , Zhang Jian , Lu Zhenkang
Published: December 2022

Walnut protein is a key plant protein resource due to its high nutritional value, but walnuts are prone to oxidation during storage and processing. This article explored the oxidative modification and digestion mechanism of walnut protein isolates by peroxyl radical and obtained new findings. SDS-PAGE and spectral analysis were used to identify structural changes in the protein after oxidative modification, and LC-MS/MS was used to identify the digestion products. The findings demonstrated that as the AAPH concentration increased, protein carbonyl content increased from 2.36 to 5.12 nmol/mg, while free sulfhydryl content, free amino content, and surface hydrophobicity decreased from 4.30 nmol/mg, 1.47 μmol/mg, and 167.92 to 1.72 nmol/mg, 1.13 μmol/mg, and 40.93 nmol/mg, respectively. Furthermore, the result of Tricine-SDS-PAGE in vitro digestion revealed that protein oxidation could cause gastric digestion resistance and a tendency for intestinal digestion promotion. Carbonyl content increased dramatically during the early stages of gastric digestion and again after 90 min of intestine digestion, and LC-MS/MS identified the last digestive products of the stomach and intestine as essential seed storage proteins. Oxidation causes walnut proteins to form aggregates, which are then re-oxidized during digestion, and proper oxidative modification may benefit intestinal digestion.
Correlation of Taste Components with Consumer Preferences and Emotions in Chinese Mitten Crabs (Eriocheir sinensis): The Use of Artificial Neural Network Model
Authors: Ding Wei , Lu Qi , Fan Licheng , Yin Mingyu , Xiao Tong , Guo Xueqian , Zhang Long , Wang Xichang
Published: December 2022

This study took a consumer sensory perspective to investigate the relationship between taste components and consumers’ preferences and emotions. Abdomen meat (M), hepatopancreas (H), and gonads (G) of Chinese mitten crabs, one from Chongming, the Jianghai 21 variety (C-JH), and two from Taixing, the Jianghai 21 (T-JH) and Yangtze II varieties (T-CJ), were used to evaluate flavor quality. The results indicated that in the abdomen meat, differences in taste components were mainly shown in the content of sweet amino acids, bitter amino acids, K+, and Ca2+; M-C-JH had the highest EUC value of 9.01 g/100 g. In the hepatopancreas, bitter amino acids were all significantly higher in H-C-JH (569.52 mg/100 g) than in the other groups (p < 0.05). In the gonads, the umami amino acid content was significantly higher in G-T-JH than in the other groups (p < 0.05) (EUC values: G-T-JH > G-C-JH > G-T-CJ). Consumer sensory responses showed that different edible parts of the crab evoked different emotions, with crab meat being closely associated with positive emotions and more complex emotional expressions for the hepatopancreas and gonads. In comparison, consumers were more emotionally positive when consuming Yangtze II crab. H-C-JH evoked negative emotions due to high bitter taste intensities. Multifactor analysis (MFA) showed arginine, alanine, glycine, proline, K+, and Ca2+ were found to have a positive correlation with consumer preference; an artificial neural network model with three neurons was built with good correlation (R2 = 0.98). This study can provide a theoretical foundation for the breeding of Chinese mitten crabs, new insights into the river crab industry, and the consumer market.
On the Solvability of Mixed-Type Fractional-Order Non-Linear Functional Integral Equations in the Banach Space C(I)
Authors: Pathak Vijai Kumar , Mishra Lakshmi Narayan , Mishra Vishnu Narayan , Baleanu Dumitru
Published: December 2022

This paper is concerned with the existence of the solution to mixed-type non-linear fractional functional integral equations involving generalized proportional (κ,ϕ)-Riemann–Liouville along with Erdélyi–Kober fractional operators on a Banach space C([1,T]) arising in biological population dynamics. The key findings of the article are based on theoretical concepts pertaining to the fractional calculus and the Hausdorff measure of non-compactness (MNC). To obtain this goal, we employ Darbo’s fixed-point theorem (DFPT) in the Banach space. In addition, we provide two numerical examples to demonstrate the applicability of our findings to the theory of fractional integral equations.
Investigation of the Ripa Model via NHRS Scheme with Its Wide-Ranging Applications
Authors: Abdelwahed H. G. , Abdelrahman Mahmoud A. E. , Alsarhana A. F. , Mohamed Kamel
Published: December 2022

This paper presents numerical modeling and investigation for the Ripa system. This model is derived from a shallow water model by merging the horizontal temperature gradients. We applied the non-homogeneous Riemann solver (NHRS) method for solving the Ripa model. This scheme contains two stages named predictor and corrector. The first one is made up of a control parameter that is responsible for the numerical diffusion. The second one recuperates the balance conservation equation. One of the main features of the NHRS scheme, it can determine the numerical flux corresponding to the real state of solution in the non-attendance of Riemann solution. Various test cases of physical interest are considered. These case studies display the high resolution of the NHRS scheme and emphasize its ability to produce accurate results for the Ripa model. The presented solutions are very critical in superfluid applications of energy and many others. Finally, the NHRS technique can be used to solve a wide range of additional models in applied research.
Fractals via Controlled Fisher Iterated Function System
Authors: Thangaraj C. , Easwaramoorthy D.
Published: December 2022

This paper explores the generalization of the fixed-point theorem for Fisher contraction on controlled metric space. The controlled metric space and Fisher contractions are playing a very crucial role in this research. The Fisher contraction on the controlled metric space is used in this paper to generate a new type of fractal set called controlled Fisher fractals (CF-Fractals) by constructing a system named the controlled Fisher iterated function system (CF-IFS). Furthermore, the interesting results and consequences of the controlled Fisher iterated function system and controlled Fisher fractals are demonstrated. In addition, the collage theorem on controlled Fisher fractals is established as well. The newly developing IFS and fractal set in the controlled metric space can provide the novel directions in the fractal theory.
Decoupling between Translational Diffusion and Viscoelasticity in Transient Networks with Controlled Network Connectivity
Authors: Katashima Takuya , Kobayashi Ryunosuke , Ishikawa Shohei , Naito Mitsuru , Miyata Kanjiro , Chung Ung-il , Sakai Takamasa
Published: December 2022

The mobility of sustained molecules is influenced by viscoelasticity, which is strongly correlated with the diffusional property in polymeric liquid. However, the study of transient networks formed by a reversible crosslink, which is the viscoelastic liquid, was insufficient due to the absence of a model system. We compare the viscoelastic and diffusional properties of the transient networks, using the model system with controlled network connectivity (Tetra-PEG slime). According to independent measurements of viscoelasticity and diffusion, the root-mean-square distance the polymer diffuses during the viscoelastic relaxation time shows a large deviation from the self-size of the polymer, which is contrary to the conventional understanding. This decoupling between viscoelasticity and diffusion is unique for transient networks, suggesting that the viscoelastic relaxation is not induced by the diffusion of one prepolymer, particularly in the network with low connectivity. These findings will provide a definite basis for discussion to understand the viscoelasticity in transient networks.
Pectin Based Hydrogels for Drug Delivery Applications: A Mini Review
Authors: Han Sung Soo , Ji Seong Min , Park Min Jung , Suneetha Maduru , Uthappa Uluvangada Thammaiah
Published: December 2022

Over the past few decades, hydrogel systems using natural polymers have been expansively employed in drug delivery applications. Among the various reported biopolymer-based hydrogel drug delivery systems, pectin (Pec) is an exceptional natural polymer due to its unique functionalities and excellent properties such as biocompatibility, biodegradability, low-cost, and simple gelling capability, which has received considerable interest in the drug delivery fields. Since there is an increasing need for biomaterials with unique properties for drug delivery applications, in this review, hydrogels fabricated from natural pectin polymers were thoroughly investigated. Additionally, the present mini review aims to bring collectively more concise ways such as sources, extraction, properties, and various forms of Pec based hydrogel drug delivery systems and their toxicity concerns are summarized. Finally, the potential objectives and challenges based on pectin-based hydrogel drug delivery systems are also discussed.
Editorial on the Special Issue “Advances in Nanogels”
Authors: Lin Chien-Chi , Mauri Emanuele , Rossi Filippo
Published: December 2022

In recent decades, the rise of nanotechnology has led to the design of innovative nano-biomaterials which are used to improve pharmacological therapies and assist with disease diagnosis [...]
Effects of Salinity on Abiotic Aggregation of Organic Matter and Subsequent Microbial Responses
Authors: Chen Tzong-Yueh , Skoog Annelie
Published: December 2022

Studies of marine aggregation have focused on determining formation rates of larger particles from small particles. However, it has been shown that particles can form from the dissolved phase, which includes colloidal material. The purpose of this study was to investigate the effect of aggregation on the chemical composition of both the dissolved and particulate phases in two salinity regimes: (1) the coast of Avery Point, Connecticut, USA (AP; salinity of 30.1 psu); (2) the estuary of Thames River, Connecticut, USA (TR; salinity of 5.0 psu). The samples were incubated on a roller table for two days in the dark at a speed of 8 rpm. The mixed collision mechanism of shear and differential sedimentation provided by the roller table enhanced the gross aggregation of particulate organic carbon (POC; 0.75 µM d−1 and 1.04 µM d−1 in AP and TR, respectively). Subsequent microbial degradation led to a negative net aggregation of POC (−5.20 µM d−1 and −1.19 µM d−1 in AP and TR, respectively). Although bacterial abundance remained in a narrow range in this study, the aggregation of organic matter (OM) enhanced planktonic community respiration (CR; CR increased 5.1 mg-C m−3 d−1 and 205.4 mg-C m−3 d−1 in AP and TR, respectively). The collision also led to a gross aggregation of uncharacterized particulate organic matter (POM) transferred from uncharacterized dissolved organic matter (DOM; 0.62 µM-C d−1 and 0.56 µM-C d−1 in AP and TR, respectively). The aggregated, uncharacterized POM could be biologically refractory. The C- and N-yields and enrichment factor (EF) analysis indicated that the organic substrate dynamics in this study were complicated.
Preparation of an LZ-OEO Compound Antibacterial Gel and the Effect of Microwave Treatment on Its Structure and Stability
Authors: Wei Shuaishuai , Gao Ying , Ma Lulu , Wang Zhan , Liu Xin , Liu Ying , Zhong Mengzhen , Dong Shijian , Li Shugang
Published: December 2022

Composite gels prepared with ovalbumin (OVA) as basic materials have been gradually utilized in food and biological fields. However, the structure and function of gels made from natural materials are not perfect, especially the hardness, viscoelasticity and water-holding capacity of gels, which are easily affected by various factors (pH, NaCl, etc.). In order to improve the antibacterial effect and safety of gels, and on the basis of exploring the bacteriostatic formula of lysozyme-oregano essential oil (LZ-OEO), the influence of microwave treatment on the stability of the composite bacteriostatic material gel was emphatically investigated and discussed so as to develop a new bacteriostatic gel material. The results revealed that the LZ-OEO antibacterial gel prepared by adding 20% OEO, with a ratio of 3:2 between OVA and LZ, was more stable after microwave treatment, and the synergistic antibacterial effect was significantly improved. That is, the OVA and LZ-OEO composite gel processed using a 350 W microwave treatment for 1 min had the highest hardness, the water-holding capacity reached 78.05% and a dense and ordered network structure was formed. In addition, the compound gel displayed excellent antibacterial effects against Staphylococcus aureus and Escherichia coli. The experimental findings in this study effectively expands the application scope of lysozyme antibacterial materials and provides a more favorable technical foundation for future development and utilization.
Insight into Glyproline Peptides’ Activity through the Modulation of the Inflammatory and Neurosignaling Genetic Response Following Cerebral Ischemia–Reperfusion
Authors: Stavchansky Vasily V. , Filippenkov Ivan B. , Remizova Julia A. , Denisova Alina E. , Mozgovoy Ivan V. , Gubsky Leonid V. , Myasoedov Nikolay F. , Andreeva Lyudmila A. , Limborska Svetlana A. , Dergunova Lyudmila V.
Published: December 2022

Glyprolines are Gly-Pro (GP)- or Pro-Gly (PG)-containing biogenic peptides. These peptides can act as neutrophil chemoattractants, or atheroprotective, anticoagulant, and neuroprotective agents. The Pro-Gly-Pro (PGP) tripeptide is an active factor of resistance to the biodegradation of peptide drugs. The synthetic Semax peptide, which includes Met-Glu-His-Phe (MEHF) fragments of adrenocorticotropic hormone and the C-terminal tripeptide PGP, serves as a neuroprotective drug for the treatment of ischemic stroke. Previously, we revealed that Semax mostly prevented the disruption of the gene expression pattern 24 h after a transient middle cerebral artery occlusion (tMCAO) in a rat brain model. The genes of this pattern were grouped into an inflammatory cluster (IC) and a neurotransmitter cluster (NC). Here, using real-time RT-PCR, the effect of other PGP-containing peptides, PGP and Pro-Gly-Pro-Leu (PGPL), on the expression of a number of genes in the IC and NC was studied 24 h after tMCAO. Both the PGP and PGPL peptides showed Semax-unlike effects, predominantly without changing gene expression 24 h after tMCAO. Moreover, there were IC genes (iL1b, iL6, and Socs3) for PGP, as well as IC (iL6, Ccl3, Socs3, and Fos) and NC genes (Cplx2, Neurod6, and Ptk2b) for PGPL, that significantly changed in expression levels after peptide administration compared to Semax treatment under tMCAO conditions. Furthermore, gene enrichment analysis was carried out, and a regulatory gene network was constructed. Thus, the spectra of the common and unique effects of the PGP, PGPL, and Semax peptides under ischemia–reperfusion were distinguished.
AMPK Promotes Larval Metamorphosis of Mytilus coruscus
Authors: Zhang Wen , Wang Yuyi , Hu Xiaomeng , Zhou Zhongsheng , Zhu Youting , Liang Xiao , Yang Jin-Long
Published: December 2022

Metamorphosis is a critical process in the transition from planktonic life to benthic life for marine invertebrates, which is accompanied by a large amount of energy consumption. Previous studies have proved that AMP-activated protein kinase (AMPK), as a vital energy regulator, plays a prominent role in mediating the growth and development of terrestrial animals. However, its function in the growth and development of marine invertebrates, especially in metamorphosis, remains elusive. This study explored the function of AMPK in the larval metamorphosis of Mytilus coruscus. The full-length cDNA of AMPK genes in M. coruscus was cloned and characterized, which is composed of three subunits, McAMPKα, McAMPKβ, and McAMPKγ. Pharmacological tests demonstrated that through the application of an AMPK activator, AMP substantially enhanced the larval metamorphosis rate (p < 0.05). By contrast, the larval metamorphosis rate decreased significantly after being treated with the AMPK inhibitor Compound C (p < 0.05). McAMPK gene knock-down resulted in a reduction in McAMPK gene expression (p < 0.05), and the larval metamorphosis of M. coruscus was significantly restrained (p < 0.05). These results indicated that AMPK signaling is vital in the larval metamorphosis of M. coruscus, which advances further understanding in exploring the molecular mechanisms in the metamorphosis of marine invertebrate larvae.
Integrative Meta-Analysis of Huntington’s Disease Transcriptome Landscape
Authors: Sneha Nela Pragathi , Dharshini S. Akila Parvathy , Taguchi Y.-H. , Gromiha M. Michael
Published: December 2022

Huntington’s disease (HD) is a neurodegenerative disorder with autosomal dominant inheritance caused by glutamine expansion in the Huntingtin gene (HTT). Striatal projection neurons (SPNs) in HD are more vulnerable to cell death. The executive striatal population is directly connected with the Brodmann Area (BA9), which is mainly involved in motor functions. Analyzing the disease samples from BA9 from the SRA database provides insights related to neuron degeneration, which helps to identify a promising therapeutic strategy. Most gene expression studies examine the changes in expression and associated biological functions. In this study, we elucidate the relationship between variants and their effect on gene/downstream transcript expression. We computed gene and transcript abundance and identified variants from RNA-seq data using various pipelines. We predicted the effect of genome-wide association studies (GWAS)/novel variants on regulatory functions. We found that many variants affect the histone acetylation pattern in HD, thereby perturbing the transcription factor networks. Interestingly, some variants affect miRNA binding as well as their downstream gene expression. Tissue-specific network analysis showed that mitochondrial, neuroinflammation, vasculature, and angiogenesis-related genes are disrupted in HD. From this integrative omics analysis, we propose that abnormal neuroinflammation acts as a two-edged sword that indirectly affects the vasculature and associated energy metabolism. Rehabilitation of blood-brain barrier functionality and energy metabolism may secure the neuron from cell death.
Clinical, Cytogenetic and Molecular Cytogenetic Outcomes of Cell-Free DNA Testing for Rare Chromosomal Anomalies
Authors: Basaran Seher , Has Recep , Kalelioglu Ibrahim Halil , Sarac Sivrikoz Tugba , Karaman Birsen , Kirgiz Melike , Dehgan Tahir , Kalayci Tugba , Ozsait Selcuk Bilge , Miny Peter , Yuksel Atil
Published: December 2022

The scope of cell-free DNA (cfDNA) testing was expanded to the genome, which allowed screening for rare chromosome anomalies (RCAs). Since the efficiency of the test for RCAs remains below the common aneuploidies, there is a debate on the usage of expanded tests. This study focuses on the confirmatory and follow-up data of cases with positive cfDNA testing for RCAs and cases with screen-negative results in a series of 912 consecutive cases that underwent invasive testing following cfDNA testing. Chorion villus sampling (CVS), amniocentesis (AS), fetal blood sampling, and term placenta samples were investigated using classical cytogenetic and molecular cytogenetic techniques. Out of 593 screen-positive results, 504 (85%) were for common aneuploidies, 40 (6.7%) for rare autosomal trisomies (RATs), and 49 (8.3%) for structural chromosome anomalies (SAs). Of the screen-positives for RATs, 20 cases were evaluated only in fetal tissue, and confined placental mosaicism (CPM) could not be excluded. Among cases with definitive results (n = 20), the rates of true positives, placental mosaics, and false positives were 35%, 45%, and 10%, respectively. Among screen-positives for SAs, 32.7% were true positives. The confirmation rate was higher for duplications than deletions (58.3% vs. 29.4%). The rate of chromosomal abnormality was 10.9% in the group of 256 screen-negatives with pathological ultrasound findings. This study provides further data to assess the efficiency of expanded cfDNA testing for RATs and SAs. The test efficiency for cfDNA seems to be higher for duplications than for deletions, which is evidence of the role of expert ultrasound in identifying pregnancies at increased risk for chromosome anomalies, even in pregnancies with screen-negatives. Furthermore, we discussed the efficiency of CVS vs. AC in screen-positives for RATs.
Folic Acid and Vitamin B12 Prevent Deleterious Effects of Rotenone on Object Novelty Recognition Memory and Kynu Expression in an Animal Model of Parkinson’s Disease
Authors: Kretzschmar Gabriela Canalli , Targa Adriano D. S. , Soares-Lima Sheila Coelho , dos Santos Priscila Ianzen , Rodrigues Lais S. , Macedo Daniel A. , Ribeiro Pinto Luis Felipe , Lima Marcelo M. S. , Boldt Angelica Beate Winter
Published: December 2022

Parkinson’s disease (PD) is characterized by a range of motor signs, but cognitive dysfunction is also observed. Supplementation with folic acid and vitamin B12 is expected to prevent cognitive impairment. To test this in PD, we promoted a lesion within the substantia nigra pars compacta of rats using the neurotoxin rotenone. In the sequence, the animals were supplemented with folic acid and vitamin B12 for 14 consecutive days and subjected to the object recognition test. We observed an impairment in object recognition memory after rotenone administration, which was prevented by supplementation (p < 0.01). Supplementation may adjust gene expression through efficient DNA methylation. To verify this, we measured the expression and methylation of the kynureninase gene (Kynu), whose product metabolizes neurotoxic metabolites often accumulated in PD as kynurenine. Supplementation prevented the decrease in Kynu expression induced by rotenone in the substantia nigra (p < 0.05), corroborating the behavioral data. No differences were observed concerning the methylation analysis of two CpG sites in the Kynu promoter. Instead, we suggest that folic acid and vitamin B12 increased global DNA methylation, reduced the expression of Kynu inhibitors, maintained Kynu-dependent pathway homeostasis, and prevented the memory impairment induced by rotenone. Our study raises the possibility of adjuvant therapy for PD with folic acid and vitamin B12.
Complete Chloroplast Genome Sequence of Endangered Species in the Genus Opisthopappus C. Shih: Characterization, Species Identification, and Phylogenetic Relationships
Authors: Zhang Xinke , Zhang Guoshuai , Jiang Yuan , Huang Linfang
Published: December 2022

Opisthopappus C. Shih is a rare genus of the Asteraceae family native to the Taihang Mountains in China. Due to the narrow distribution area, poor reproduction ability and human harvesting, Opisthopappus is threatened by extinction. However, the limited genetic information within Opisthopappus impede understanding of the conservation efforts and bioprospecting. Therefore, in this study, we reported the complete chloroplast (cp) genome sequences of two Opisthopappus species, including Opisthopappus taihangensis and Opisthopappus longilobus. The cp genomes of O. taihangensis and O. longilobus were 151,117 and 151,123 bp, which contained 88 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. The repeat sequences, codon usage, RNA-editing sites, and comparative analyses revealed a high degree of conservation between the two species. The ycf1 gene was identified as a potential molecular marker. The phylogenetic tree demonstrated that O. longilobus was a separate species and not a synonym or variety of O. taihangensis. The molecular clock showed that two species diverge over a large time span, O. longilobus diverged at 15.24 Mya (Million years ago), whereas O. taihangensis diverged at 5.40 Mya We found that Opisthopappus and Ajania are closely related, which provides new ideas for the development of Opisthopappus. These results provide biological information and an essential basis to understand the evolutionary history of the Opisthopappus species, which will aid in the future the bioprospecting and conservation of endangered species.
Whole-Genome Sequence Analysis Reveals the Origin of the Chakouyi Horse
Authors: Li Ying , Liu Yu , Wang Min , Lin Xiaoran , Li Yuanyuan , Yang Tao , Feng Mo , Ling Yao , Zhao Chunjiang
Published: December 2022

The Chakouyi horse is an ancient Chinese indigenous horse breed distributed in Gansu Province in northwestern China, and is also one of the key breeds protected by the government. However, the origin of the Chakouyi horse remains unclear. As it is distributed in a key region of the Silk Road, it was speculated that the origin of the Chakouyi horse might involve the foreign horse breeds found along this ancient commercial artery. In this study, whole-genome resequencing data of 12 horse breeds, including both indigenous and foreign horses, were applied to reveal the genetic relationships between the Chakouyi horse and other breeds, as well as the ancestry of this ancient breed. An analysis of the population structure and admixture showed that there is no close genetic affinity between the Chakouyi horse and the foreign horses while Chinese indigenous horse populations were grouped together in accordance with their geographic locations, and the Chakouyi horse showed a closer relationship with Kazak horses, Mongolian horses, and Tibetan horses. The results from the ancestral composition prediction indicated that the Kazak horse and the Mongolian horse might be two ancestors of the Chakouyi horse. Furthermore, the genome-wide selection signature analysis revealed that the DMRT3 gene was positively selected in the Chakouyi horse and related to the gait trait of the breed. Our results provide insights into the native origin of the Chakouyi horse and indicate that Kazak and Mongolian horses played important roles in the formation of the Chakouyi horse. Genetic communication between the Chakouyi horse and other horse populations could be attributed, at least partially, to population migrations and trade activities along the ancient commercial routes.
Dating of Holocene Sedimentary and Paleosol Sequence within the Guadalentín Depression (Murcia, SE Spain): Paleoclimatic Implications and Paleoseismic Signals
Authors: Silva Pablo G. , Roquero Elvira , Medialdea Alicia , Bardají Teresa , Élez Javier , Rodríguez-Pascua Miguel A.
Published: December 2022

This work presents the chronology of the Holocene filling of the Guadalentín Tectonic Depression (Murcia, SE Spain) combining 14C and OSL age data. This work studies the sediments and paleosols interbedded in the sedimentary sequence between Totana and Librilla, using as reference the Espuña Karting section (Alhama de Murcia), which has been fully sampled for its geochronological analysis. The entire dated sequences record the last c. 20–19 ka BP, although local basal travertine beds extend back to the Late Pleistocene (30–33 ka). Soil morphology and properties from dated paleosols record different environmental crises in SE Spain, but also a progressive aridification throughout the Holocene. The Chalcolithic Paleosol develops soon after c. 4.6–4.0 BP, nearly coinciding with the start of the Meghalayan stage, evidencing a drastic change from relatively humid to arid conditions, coincident with the crisis of the Copper Age civilizations in Spain. The Bronze Age paleosol also developed under arid but relatively more humid conditions, indicating a more important and longer gap in the sedimentary sequence soon after c. 2.5–2.7 ka BP. This stop in the sedimentation are correlative to the first stages of fluvial incision at basin center locations and the desiccation and fragmentation of the ancient wetlands coinciding with the collapse of the Bronze Age civilizations in SE Spain (Argaric Culture). During the Ibero-Roman Humid Period (IRHP), c. 2.6–1.6 ka BP, the last pedogenic cycle occurred under relatively humid conditions. This preluded the progressive establishment of exorheic fluvial environments as well as a period of paleoseismic activity in the area around 2.0–1.8 ka BP.
Neck and Shoulder Morbidity in Patients with Oral Cancer and Clinically Negative Node Neck Status: A Comparison between the Elective Neck Dissection and Sentinel Lymph Node Biopsy Strategies
Authors: van Hinte Gerben , Withagen Koen P. A. , de Bree Remco , Speksnijder Caroline M.
Published: December 2022

The choice for the most optimal strategy for patients with a cT1-2N0 carcinoma of the oral cavity, sentinel lymph node biopsy (SLNB) or elective neck dissection (END), is still open for debate in many head and neck cancer (HNC) treatment centers. One of the possible benefits of the less invasive SLNB could be reduced neck and shoulder morbidity. Recent studies have shown a benefit in favor of SLNB the first year after intervention, but the long-term consequences and differences in neck morbidity remain unclear. This cross-sectional study aimed to research differences in neck and shoulder morbidity and Health-Related Quality of Life (HR-QoL) in patients with a cT1-2N0 carcinoma of the oral cavity, treated with either END or SLNB. Neck and shoulder morbidity and HR-QOL were measured with patient-reported questionnaires (SDQ, SPADI, NDI, NDII, EORTC-QLQ-C30, EORTC-QLQ-HN35) and active range of motion (AROM) measurements. In total 18 patients with END and 20 patients with SLNB were included. We found no differences between END and SLNB for long-term neck morbidity, shoulder morbidity, and HR-QOL. The significant differences found in the rotation of the neck are small and not clinically relevant.
The Effect of Single Bout Treatment of Heat or Cold Intervention on Delayed Onset Muscle Soreness Induced by Eccentric Contraction
Authors: Yoshida Riku , Nakamura Masatoshi , Ikegami Ryo
Published: December 2022

We studied the preventive effects of heat or cold therapy after repeated eccentric contraction against torque reduction, muscle soreness, and range of motion (ROM) due to delayed-onset muscle soreness (DOMS). A total of 42 healthy male subjects were randomly allocated into three groups: the HEAT group received heat therapy using an ultra-short-wave device; the ICE group received ice therapy using an ice pack; the Control group received no intervention. The measurements included maximal voluntary isometric, concentric, and eccentric elbow flexion torque, elbow extension ROM, pressure pain threshold, and muscle soreness with stretching muscle thickness and echo intensity. The measurements were taken before (pre), after (post), after (t-post), one–four days after, and seven days after the muscle damage protocol. The results showed the main effect of time on all measurements, but no significant interactions were observed. The results of this study suggest that heat or cold therapy in the first 30 min after intense eccentric exercise is insufficient to exert a preventive effect against DOMS.
Competencies in Basic Life Support after a Course with or without Rescue Ventilation: Historical Cohort Study
Authors: Castillo Jordi , González-Marrón Adrián , Llongueras Anna , Camós Laia , Montané Mireia , Rodríguez-Higueras Encarnación
Published: December 2022

Background: Simplifying the international guidelines to improve skills after training and their retention over time has been one of the top priorities in recent years. The objective of our study was to compare the results of the practical skills learned during training in basic life support with and without pulmonary ventilation. Methods: This was a comparative study of historical cohorts consisting of undergraduate students in health sciences. In one cohort, rescue breathing was performed, and in the other, it was not. The same data collection instruments were used for both cohorts: a test type examination of knowledge, data from a smart mannequin and an instructor observation grid. The means of knowledge and practical skills scores collected by the mannequin were compared using independent sample t-tests. Results: 497 students were recruited without significant differences between the two cohorts. The mean scores for knowledge and skills determined by the instructor and the mannequin were statistically higher in the cohort that did not perform rescue breathing. Conclusion: Students who participated in basic life support training that did not include rescue breathing scored better than those who participated in training that included this skill. Training with only compressions simplifies the guidelines and increases learning and content retention.
A Narrative Review of Current Striae Treatments
Authors: Mendes Nuno , Alves Paulo Jorge , Barros Mafalda , Rodrigues Jorge Magalhães , Machado Jorge
Published: December 2022

Striae (striae cutis distensae) are a common disfiguring skin condition, characterised by the appearance of linear bands on the skin, with an atrophic look. The striae development is still unknown, being more common in women than in men. The prevalence of this condition ranges from 50% to 90%. Regarding treatment, there are various treatment strategies currently available for stretch marks, including topical preparations such as tretinoin and glycolic acid, and also laser. The goal of this work is to discover the main treatments available for striae management. For that, a search was performed based on the definition of specific scientific keywords, by exploring PubMed, ScienceDirect and Biblioteca Virtual em Saúde (BVS). MeSH thesaurus (Medical Subject Headings) descriptors were used. The results indicate that, to date, no treatment is fully effective. More clinical trials are needed to validate the efficacy of these therapies and their long-term use in this type of skin lesion.
Cumulative Burden of Being Underweight Increases the Risk of Hip Fracture: A Nationwide Population-Based Cohort Study
Authors: Lee Han-Dong , Han Sangsoo , Jang Hae-Dong , Han Kyungdo , Chung Nam-Su , Chung Hee-Woong , Park Ki-Hoon , Yoon Ha-Seung , Hong Jae-Young
Published: December 2022

(1) Background: Being underweight is a known risk factor for hip fractures. However, it is unclear whether the cumulative underweight burden affects the incidence of hip fractures. Therefore, we explored the effect of the cumulative underweight burden on the development of hip fractures; (2) Methods: In a cohort of adults aged 40 years and older, 561,779 participants who were not underweight and had no hip fractures from 2007 to 2009 were identified. The risk of hip fracture from the time of the last examination to December 2018 according to the cumulative burden of being underweight (based on 0 to 3 examinations) was prospectively analyzed; (3) Results: During follow-up (mean 8.3 ± 0.8 years), the prevalence of newly diagnosed hip fractures was 0.2%, 0.4%, 0.5%, and 0.9% among those with 0, 1, 2, and 3 cumulative underweight, respectively. The adjusted hazard ratios (HRs) with 95% confidence intervals (CIs) of groups meeting the diagnostic criteria for underweight 1, 2, and 3 compared to 0 were 2.3 (1.6–3.3), 2.9 (1.8–4.5), and 4.5 (3.4–6.1), respectively (p for trend < 0.01); (4) Conclusions: The risk of hip fracture increased as the burden of underweight accumulated.
Fetal Movement Counting in Prolonged Pregnancies: The COMPTAMAF Prospective Randomized Trial
Authors: Moniod Louise , Hovine Agathe , Trombert Béatrice , Rancon Florence , Zufferey Paul , Chauveau Laura , Chauleur Céline , Raia-Barjat Tiphaine
Published: December 2022

In prolonged pregnancies, the risks of neonatal morbidity and mortality are increased. The aim of this trial was to assess the benefits of maternal information about fetal movement (FM) counting on neonatal outcomes in prolonged pregnancy. It was a prospective, single center, randomized, open-label study conducted from October 2019 to March 2022. Intention-to-treat analyses were performed on 278 patients randomized into two 1:1 groups (control group and FM counting group). The primary outcome was a composite score of neonatal morbidity (presence of two of the following items: fetal heart rate abnormality at delivery, Apgar score of <7 at 5 min, umbilical cord arterial pH of <7.20, and acute respiratory distress with mutation in neonatal intensive care unit). There was no significant difference between the two groups in the rate of neonatal morbidity (14.0% in the FM counting group versus 22.9% in the standard information group; p = 0.063; OR 0.55, 95% CI 0.29–1.0). In this study, fetal movement counting for women in prolonged pregnancy failed to demonstrate a significant reduction in adverse neonatal outcomes.
Prevalence of Spirometry Testing among Patients with Asthma and COPD in German General Practices
Authors: Härtel Annika , Peters Maximilian , Kostev Karel
Published: December 2022

The goal of this study was to estimate the prevalence of spirometry testing among patients with asthma and chronic obstructive pulmonary disease (COPD) in general practices (GPs) in Germany. This retrospective cross-sectional study was based on data from the Disease Analyzer database (IQVIA), This retrospective cross-sectional study included all patients with at least one confirmed asthma or COPD diagnosis in one of those 50 general practices in Germany between January 2020, and January 2021, as well as at least one visit to these general practices between January 2021, and January 2022. The main outcomes of the study aimed to ascertain the proportion of spirometry testing among asthma and COPD patients between January 2021, and January 2022, overall, and separately, in men, women, six age groups (≤30, 31–40, 41–50, 51–60, 61, 70, >70), and patients who received at least one prescription of anti-asthma or anti-COPD drugs. This study included 8835 patients with asthma only, 5597 with COPD only, and 1897 with both asthma and COPD diagnoses. Of these, 27.2% of COPD patients, 7% of asthma patients, and 54.7% of asthma + COPD patients, received spirometry testing during the study period. Among COPD and asthma + COPD patients, the prevalence of spirometry testing was much higher in women than in men (COPD: 31.6% vs. 23.2%; asthma + COPD: 59.6% vs. 46.3%) and much higher in treated than in non-treated patients (COPD: 31.7% vs. 15.0%; asthma + COPD: 57.5% vs. 27.8%). The prevalence of spirometry testing was relatively low among COPD and asthma patients followed in GP practices, but usually higher in female patients, treated patients, and patients suffering from both asthma and COPD.