bluuebunny/crossref_metadata_2025 huggingface dataset:
Supplementary Tables from Targeting Subtype-Specific Metabolic Preferences in Nucleotide Biosynthesis Inhibits Tumor Growth in a Breast Cancer Model
Authors: Ogrodzinski Martin P. , Teoh Shao Thing , Lunt Sophia Y.
Published: April 2023

Supplementary Table 1-8.
Supplementary Material from Targeting Subtype-Specific Metabolic Preferences in Nucleotide Biosynthesis Inhibits Tumor Growth in a Breast Cancer Model
Authors: Ogrodzinski Martin P. , Teoh Shao Thing , Lunt Sophia Y.
Published: April 2023

Supplementary figures and supplementary table titles.
Supplementary Figure S1 from Misannotated Multi-Nucleotide Variants in Public Cancer Genomics Datasets Lead to Inaccurate Mutation Calls with Significant Implications
Authors: Srinivasan Sujaya , Kalinava Natallia , Aldana Rafael , Li Zhipan , van Hagen Sjoerd , Rodenburg Sander Y.A. , Wind-Rotolo Megan , Qian Xiaozhong , Sasson Ariella S. , Tang Hao , Kirov Stefan
Published: April 2023

Example knitr report based on CBio export for 26 TCGA melanoma samples
Figure S1 from Targeting CDK12 for Cancer Therapy: Function, Mechanism, and Drug Discovery
Authors: Liu Hui , Liu Kangdong , Dong Zigang
Published: April 2023

Molecular function of CDK12
Supplementary Table S2 from Cancers from Novel Pole-Mutant Mouse Models Provide Insights into Polymerase-Mediated Hypermutagenesis and Immune Checkpoint Blockade
Authors: Galati Melissa A. , Hodel Karl P. , Gams Miki S. , Sudhaman Sumedha , Bridge Taylor , Zahurancik Walter J. , Ungerleider Nathan A. , Park Vivian S. , Ercan Ayse B. , Joksimovic Lazar , Siddiqui Iram , Siddaway Robert , Edwards Melissa , de Borja Richard , Elshaer Dana , Chung Jiil , Forster Victoria J. , Nunes Nuno M. , Aronson Melyssa , Wang Xia , Ramdas Jagadeesh , Seeley Andrea , Sarosiek Tomasz , Dunn Gavin P. , Byrd Jonathan N. , Mordechai Oz , Durno Carol , Martin Alberto , Shlien Adam , Bouffet Eric , Suo Zucai , Jackson James G. , Hawkins Cynthia E. , Guidos Cynthia J. , Pursell Zachary F. , Tabori Uri
Published: April 2023

Tumor incidence of Pole mutant mice
Supplementary Data from Cancers from Novel Pole-Mutant Mouse Models Provide Insights into Polymerase-Mediated Hypermutagenesis and Immune Checkpoint Blockade
Authors: Galati Melissa A. , Hodel Karl P. , Gams Miki S. , Sudhaman Sumedha , Bridge Taylor , Zahurancik Walter J. , Ungerleider Nathan A. , Park Vivian S. , Ercan Ayse B. , Joksimovic Lazar , Siddiqui Iram , Siddaway Robert , Edwards Melissa , de Borja Richard , Elshaer Dana , Chung Jiil , Forster Victoria J. , Nunes Nuno M. , Aronson Melyssa , Wang Xia , Ramdas Jagadeesh , Seeley Andrea , Sarosiek Tomasz , Dunn Gavin P. , Byrd Jonathan N. , Mordechai Oz , Durno Carol , Martin Alberto , Shlien Adam , Bouffet Eric , Suo Zucai , Jackson James G. , Hawkins Cynthia E. , Guidos Cynthia J. , Pursell Zachary F. , Tabori Uri
Published: April 2023

Supplemental Titles and Figure Legends
Supplementary Data Figures 1-8 from Cancers from Novel Pole-Mutant Mouse Models Provide Insights into Polymerase-Mediated Hypermutagenesis and Immune Checkpoint Blockade
Authors: Galati Melissa A. , Hodel Karl P. , Gams Miki S. , Sudhaman Sumedha , Bridge Taylor , Zahurancik Walter J. , Ungerleider Nathan A. , Park Vivian S. , Ercan Ayse B. , Joksimovic Lazar , Siddiqui Iram , Siddaway Robert , Edwards Melissa , de Borja Richard , Elshaer Dana , Chung Jiil , Forster Victoria J. , Nunes Nuno M. , Aronson Melyssa , Wang Xia , Ramdas Jagadeesh , Seeley Andrea , Sarosiek Tomasz , Dunn Gavin P. , Byrd Jonathan N. , Mordechai Oz , Durno Carol , Martin Alberto , Shlien Adam , Bouffet Eric , Suo Zucai , Jackson James G. , Hawkins Cynthia E. , Guidos Cynthia J. , Pursell Zachary F. , Tabori Uri
Published: April 2023

Supplementary Figure S1 (related to Figure 1): PoleP286R mouse model design, validation, and tumor findings. Supplementary Figure S2 (related to Figure 1): PoleS459F mouse model design, validation, and tumor findings. Supplementary Figure S3 (related to Figure 2): WES analysis reveals a stochastic accumulation of mutations in Pole mutant tumors. Supplementary Figure S4 (related to Figure 2): Tumors from Pole mutant mice exhibit mutational signatures found in POLE driven human cancers. Supplementary Figure S5 (related to Figure 2): Exome data from tumor fractions from a single mouse were compared for 3 additional mice. Supplementary Figure S6. Determination of cell of origin for PoleS459F/S459F and PoleS459F/+ mice lymphomas (Related to Figure 3). Supplementary Figure S7. Characterization of T cell malignancies in PoleS459F/S459F and PoleS459F/+ mice (Related to Figure 3). Supplemental Figure S8. Extrinsic effect of 'Group B' malignant T cells on B cell population; (Related to Figure 3).
Supplementary Data from CDK2-Mediated Upregulation of TNFα as a Mechanism of Selective Cytotoxicity in Acute Leukemia
Authors: Ding Husheng , Vincelette Nicole D. , McGehee Cordelia D. , Kohorst Mira A. , Koh Brian D. , Venkatachalam Annapoorna , Meng X. Wei , Schneider Paula A. , Flatten Karen S. , Peterson Kevin L. , Correia Cristina , Lee Sun-Hee , Patnaik Mrinal , Webster Jonathan A. , Ghiaur Gabriel , Smith B. Douglas , Karp Judith E. , Pratz Keith W. , Li Hu , Karnitz Larry M. , Kaufmann Scott H.
Published: April 2023

Supplementary methods, three supplementary tables and 16 supplementary figures
Supplementary Table 1 from Heterogeneity and Clonal Evolution of Acquired PARP Inhibitor Resistance in TP53- and BRCA1-Deficient Cells
Authors: Färkkilä Anniina , Rodríguez Alfredo , Oikkonen Jaana , Gulhan Doga C. , Nguyen Huy , Domínguez Julieta , Ramos Sandra , Mills Caitlin E. , Pérez-Villatoro Fernando , Lazaro Jean-Bernard , Zhou Jia , Clairmont Connor S. , Moreau Lisa A. , Park Peter J. , Sorger Peter K. , Hautaniemi Sampsa , Frias Sara , D'Andrea Alan D.
Published: April 2023

Supplementary Table 1 showing reagents and antibodies used in the study.
Supplementary Data from Heterogeneity and Clonal Evolution of Acquired PARP Inhibitor Resistance in TP53- and BRCA1-Deficient Cells
Authors: Färkkilä Anniina , Rodríguez Alfredo , Oikkonen Jaana , Gulhan Doga C. , Nguyen Huy , Domínguez Julieta , Ramos Sandra , Mills Caitlin E. , Pérez-Villatoro Fernando , Lazaro Jean-Bernard , Zhou Jia , Clairmont Connor S. , Moreau Lisa A. , Park Peter J. , Sorger Peter K. , Hautaniemi Sampsa , Frias Sara , D'Andrea Alan D.
Published: April 2023

Supplementary Materials and methods showing details of the in vitro and genomic analyses.
Supplementary Table 2 from Differential Regulation of Cancer Progression by CDK4/6 Plays a Central Role in DNA Replication and Repair Pathways
Authors: Dai Meiou , Boudreault Julien , Wang Ni , Poulet Sophie , Daliah Girija , Yan Gang , Moamer Alaa , Burgos Sergio A. , Sabri Siham , Ali Suhad , Lebrun Jean-Jacques
Published: April 2023

Supplementary Table 2
Supplementary Data from Differential Regulation of Cancer Progression by CDK4/6 Plays a Central Role in DNA Replication and Repair Pathways
Authors: Dai Meiou , Boudreault Julien , Wang Ni , Poulet Sophie , Daliah Girija , Yan Gang , Moamer Alaa , Burgos Sergio A. , Sabri Siham , Ali Suhad , Lebrun Jean-Jacques
Published: April 2023

Supplementary Figure 1
Supplementary Data from Hypoxia-Induced Suppression of Alternative Splicing of MBD2 Promotes Breast Cancer Metastasis via Activation of FZD1
Authors: Liu Zhaoji , Sun Linchong , Cai Yongping , Shen Shengqi , Zhang Tong , Wang Nana , Wu Gongwei , Ma Wenhao , Li Shi-Ting , Suo Caixia , Hao Yijie , Jia Wei-Dong , Semenza Gregg L. , Gao Ping , Zhang Huafeng
Published: April 2023

Supplementary Figures: Figure S1. MBD2a and MBD2c exert opposing roles in BrCa cell migration. Figure S2. Hypoxia inhibits SRSF2-mediated MBD2 splicing. Figure S3. MBD2a and MBD2c inversely regulate EMT markers. Figure S4. DNA methylation controls MBD2-mediated FZD1 transcription. Figure S5. The effect of MBD2a and MBD2c on breast tumor growth in vivo. Supplementary Tables: Table S1, DAVID analysis of the co-regulated genes. Table S2, Metastasis-related Genes with altered expression according to RNA-seq data involved in cell migration. Table S3, DAVID analysis of the co-regulated and co-bound genes. Table S4, Primers used for quantification of mRNA and genome DNA. Table S5, Information of antibody, chemical reagent, cell line and software.
Supplementary Table from JMJD6 Is a Druggable Oxygenase That Regulates AR-V7 Expression in Prostate Cancer
Authors: Paschalis Alec , Welti Jonathan , Neeb Antje J. , Yuan Wei , Figueiredo Ines , Pereira Rita , Ferreira Ana , Riisnaes Ruth , Rodrigues Daniel Nava , Jiménez-Vacas Juan M. , Kim Soojin , Uo Takuma , Micco Patrizio Di , Tumber Anthony , Islam Md. Saiful , Moesser Marc A. , Abboud Martine , Kawamura Akane , Gurel Bora , Christova Rossitza , Gil Veronica S. , Buroni Lorenzo , Crespo Mateus , Miranda Susana , Lambros Maryou B. , Carreira Suzanne , Tunariu Nina , Alimonti Andrea , Al-Lazikani Bissan , Schofield Christopher J. , Plymate Stephen R. , Sharp Adam , de Bono Johann S.
Published: April 2023

Supplementary Table from JMJD6 Is a Druggable Oxygenase That Regulates AR-V7 Expression in Prostate Cancer
Supplementary Table S2 from Targeting p300/CBP Attenuates Hepatocellular Carcinoma Progression through Epigenetic Regulation of Metabolism
Authors: Cai Ling-Yan , Chen Shi-Jie , Xiao Sen-Hao , Sun Qin-Juan , Ding Chen-Hong , Zheng Bai-Nan , Zhu Xin-Yan , Liu Shu-Qing , Yang Feng , Yang Ya-Xi , Zhou Bing , Luo Cheng , Zhang Xin , Xie Wei-Fen
Published: April 2023

Supplementary Table S2. Differentially expressed genes of RNA-seq
Captions of supplementary movie and tables from Endocytosis-Mediated Replenishment of Amino Acids Favors Cancer Cell Proliferation and Survival in Chromophobe Renal Cell Carcinoma
Authors: Xiao Yi , Rabien Anja , Buschow René , Amtislavskiy Vyacheslav , Busch Jonas , Kilic Ergin , Villegas Sonia L. , Timmermann Bernd , Schütte Moritz , Mielke Thorsten , Yaspo Marie-Laure , Jung Klaus , Meierhofer David
Published: April 2023

Captions of supplementary movie and tables
Supplementary Data from KIF15-Mediated Stabilization of AR and AR-V7 Contributes to Enzalutamide Resistance in Prostate Cancer
Authors: Gao Lin , Zhang Wenbo , Zhang Jing , Liu Junmei , Sun Feifei , Liu Hui , Hu Jing , Wang Xin , Wang Xueli , Su Peng , Chen Shouzhen , Qu Sifeng , Shi Benkang , Xiong Xueting , Chen Weiwen , Dong Xuesen , Han Bo
Published: April 2023

supplemary figures and figure legend
Supplemental Data and Methods from Glia-Selective Deletion of Complement C1q Prevents Radiation-Induced Cognitive Deficits and Neuroinflammation
Authors: Markarian Mineh , Krattli Robert P. , Baddour Jabra D. , Alikhani Leila , Giedzinski Erich , Usmani Manal T. , Agrawal Anshu , Baulch Janet E. , Tenner Andrea J. , Acharya Munjal M.
Published: April 2023

Suppl. Table T1 Suppl. Fig. S1 Suppl. Fig. S2 Detailed methods
Supplementary Table S5 from Activated ALK Cooperates with N-Myc via Wnt/β-Catenin Signaling to Induce Neuroendocrine Prostate Cancer
Authors: Unno Kenji , Chalmers Zachary R. , Pamarthy Sahithi , Vatapalli Rajita , Rodriguez Yara , Lysy Barbara , Mok Hanlin , Sagar Vinay , Han Huiying , Yoo Young A. , Ku Sheng-Yu , Beltran Himisha , Zhao Yue , Abdulkadir Sarki A.
Published: April 2023

Supplementary Table S5. Analysis of ALK and potential ALK-ligand mRNA expression in metastatic prostate cancer dataset.
Figure S1 to S6 from Single-Cell Analyses Reveal Diverse Mechanisms of Resistance to EGFR Tyrosine Kinase Inhibitors in Lung Cancer
Authors: Kashima Yukie , Shibahara Daisuke , Suzuki Ayako , Muto Kyoko , Kobayashi Ikei S. , Plotnick David , Udagawa Hibiki , Izumi Hiroki , Shibata Yuji , Tanaka Kosuke , Fujii Masanori , Ohashi Akihiro , Seki Masahide , Goto Koichi , Tsuchihara Katsuya , Suzuki Yutaka , Kobayashi Susumu S.
Published: April 2023

Supplementary Figure S1 to S6
Supplementary Table S3 from Nedd9 Restrains Autophagy to Limit Growth of Early Stage Non–Small Cell Lung Cancer
Authors: Deneka Alexander Y. , Kopp Meghan C. , Nikonova Anna S. , Gaponova Anna V. , Kiseleva Anna A. , Hensley Harvey H. , Flieder Douglas B. , Serebriiskii Ilya G. , Golemis Erica A.
Published: April 2023

GWAS studies of NEDD9 variants
Supplementary Figures from LncRNA HIF1A-AS1 Promotes Gemcitabine Resistance of Pancreatic Cancer by Enhancing Glycolysis through Modulating the AKT/YB1/HIF1α Pathway
Authors: Xu Fengyu , Huang Mengqi , Chen Qingyong , Niu Yi , Hu Yuhang , Hu Ping , Chen Ding , He Chi , Huang Kang , Zeng Zhu , Tang Jiang , Wang Fan , Zhao Yong , Wang Chunyou , Zhao Gang
Published: April 2023

Supplementary Figures
Supplementary Data from Lymphatic PD-L1 Expression Restricts Tumor-Specific CD8+ T-cell Responses
Authors: Cousin Nikola , Cap Stefan , Dihr Manuel , Tacconi Carlotta , Detmar Michael , Dieterich Lothar C.
Published: April 2023

Supplementary Data from Lymphatic PD-L1 Expression Restricts Tumor-Specific CD8+ T-cell Responses
Supplementary Data from Cooperative Targeting of Immunotherapy-Resistant Melanoma and Lung Cancer by an AXL-Targeting Antibody–Drug Conjugate and Immune Checkpoint Blockade
Authors: Boshuizen Julia , Pencheva Nora , Krijgsman Oscar , Altimari Daniela D'Empaire , Castro Patricia Garrido , de Bruijn Beaunelle , Ligtenberg Maarten A. , Gresnigt-Van den Heuvel Elke , Vredevoogd David W. , Song Ji-Ying , Visser Nils , Apriamashvili Georgi , Janmaat Maarten L. , Plantinga Theo S. , Franken Patrick , Houtkamp Mischa , Lingnau Andreas , Jure-Kunkel Maria , Peeper Daniel S.
Published: April 2023

Supplementary figures 1-5 and legends
Supplementary Data from EPHB2 Activates β-Catenin to Enhance Cancer Stem Cell Properties and Drive Sorafenib Resistance in Hepatocellular Carcinoma
Authors: Leung Hoi Wing , Leung Carmen Oi Ning , Lau Eunice Y. , Chung Katherine Po Sin , Mok Etienne H. , Lei Martina Mang Leng , Leung Rainbow Wing Hei , Tong Man , Keng Vincent W. , Ma Cong , Zhao Qian , Ng Irene Oi Lin , Ma Stephanie , Lee Terence K.
Published: April 2023

Supplementary Information
Figure S4 from Tumor-Derived Pericytes Driven by EGFR Mutations Govern the Vascular and Immune Microenvironment of Gliomas
Authors: Segura-Collar Berta , Garranzo-Asensio María , Herranz Beatriz , Hernández-SanMiguel Esther , Cejalvo Teresa , Casas Bárbara S. , Matheu Ander , Pérez-Núñez Ángel , Sepúlveda-Sánchez Juan Manuel , Hernández-Laín Aurelio , Palma Verónica , Gargini Ricardo , Sánchez-Gómez Pilar
Published: April 2023

Association of EGFR alterations with BBB leakage and definition of a hypoxia signature in gliomas.
Supplementary Materials and Methods from Multiple Roles of IL6 in Hepatic Injury, Steatosis, and Senescence Aggregate to Suppress Tumorigenesis
Authors: Shriki Anat , Lanton Tali , Sonnenblick Amir , Levkovitch-Siany Orr , Eidelshtein Dana , Abramovitch Rinat , Rosenberg Nofar , Pappo Orit , Elgavish Sharona , Nevo Yuval , Safadi Rifaat , Peled Amnon , Rose-John Stefan , Galun Eithan , Axelrod Jonathan H.
Published: April 2023

Supplemental Experimental Materials and Methods
Supplementary Data from Multiple Roles of IL6 in Hepatic Injury, Steatosis, and Senescence Aggregate to Suppress Tumorigenesis
Authors: Shriki Anat , Lanton Tali , Sonnenblick Amir , Levkovitch-Siany Orr , Eidelshtein Dana , Abramovitch Rinat , Rosenberg Nofar , Pappo Orit , Elgavish Sharona , Nevo Yuval , Safadi Rifaat , Peled Amnon , Rose-John Stefan , Galun Eithan , Axelrod Jonathan H.
Published: April 2023

Supplemental Figures and Tables
Figure S1 from Cancer-Associated Fibroblasts in Pancreatic Ductal Adenocarcinoma Determine Response to SLC7A11 Inhibition
Authors: Sharbeen George , McCarroll Joshua A. , Akerman Anouschka , Kopecky Chantal , Youkhana Janet , Kokkinos John , Holst Jeff , Boyer Cyrille , Erkan Mert , Goldstein David , Timpson Paul , Cox Thomas R. , Pereira Brooke A. , Chitty Jessica L. , Fey Sigrid K. , Najumudeen Arafath K. , Campbell Andrew D. , Sansom Owen J. , Ignacio Rosa Mistica C. , Naim Stephanie , Liu Jie , Russia Nelson , Lee Julia , Chou Angela , Johns Amber , Gill Anthony J. , Gonzales-Aloy Estrella , Gebski Val , Guan Yi Fang , Pajic Marina , Turner Nigel , Apte Minoti V. , Davis Thomas P. , Morton Jennifer P. , Haghighi Koroush S. , Kasparian Jorjina , McLean Benjamin J. , Setargew Yordanos F. , Phillips Phoebe A.
Published: April 2023

Validation of SLC7A11 antibodies and SLC7A11 knockdown in CAFs and PDAC cells in vitro.
Figures S1-S9 from SNAI2-Mediated Repression of BIM Protects Rhabdomyosarcoma from Ionizing Radiation
Authors: Wang Long , Hensch Nicole R. , Bondra Kathryn , Sreenivas Prethish , Zhao Xiang R. , Chen Jiangfei , Moreno Campos Rodrigo , Baxi Kunal , Vaseva Angelina V. , Sunkel Benjamin D. , Gryder Berkley E. , Pomella Silvia , Stanton Benjamin Z. , Zheng Siyuan , Chen Eleanor Y. , Rota Rossella , Khan Javed , Houghton Peter J. , Ignatius Myron S.
Published: April 2023

Supplementary Figures S1-S9
Supplementary Data from PINK1-Mediated Inhibition of EGFR Dimerization and Activation Impedes EGFR-Driven Lung Tumorigenesis
Authors: Lin Emily Pei-Ying , Huang Bo-Tsang , Lai Wei-Yun , Tseng Yi-Ting , Yang Shuenn-Chen , Kuo Hao-Cheng , Yang Pan-Chyr
Published: April 2023

Figure S1-S6
Table S5 from Epstein–Barr Virus–Encoded Circular RNA CircBART2.2 Promotes Immune Escape of Nasopharyngeal Carcinoma by Regulating PD-L1
Authors: Ge Junshang , Wang Jie , Xiong Fang , Jiang Xianjie , Zhu Kunjie , Wang Yian , Mo Yongzhen , Gong Zhaojian , Zhang Shanshan , He Yi , Li Xiayu , Shi Lei , Guo Can , Wang Fuyan , Zhou Ming , Xiang Bo , Li Yong , Li Guiyuan , Xiong Wei , Zeng Zhaoyang
Published: April 2023

Mass spectrometry identification of proteins pulled down by biotin-labeled circBART2.2 probe.
Supplementary Tables from The Proteomic Landscape of Growth Factor Signaling Networks Associated with FAT1 Mutations in Head and Neck Cancers
Authors: Chen Zhengjia , Zhang Chao , Chen Jianhong , Wang Dongsheng , Tu Jieqi , Van Waes Carter , Saba Nabil F. , Chen Zhuo G. , Chen Zhong
Published: April 2023

Supplementary Table S1, S2, S4, S6, S7
Table S3 from Epstein–Barr Virus–Encoded Circular RNA CircBART2.2 Promotes Immune Escape of Nasopharyngeal Carcinoma by Regulating PD-L1
Authors: Ge Junshang , Wang Jie , Xiong Fang , Jiang Xianjie , Zhu Kunjie , Wang Yian , Mo Yongzhen , Gong Zhaojian , Zhang Shanshan , He Yi , Li Xiayu , Shi Lei , Guo Can , Wang Fuyan , Zhou Ming , Xiang Bo , Li Yong , Li Guiyuan , Xiong Wei , Zeng Zhaoyang
Published: April 2023

Probes for fluorescence in situ hybridization and RNA pulldown, siRNAs, primers for ChIP assays and RT-PCR, and luciferase reporter vectors.
Supplementary Table S8 from The Proteomic Landscape of Growth Factor Signaling Networks Associated with FAT1 Mutations in Head and Neck Cancers
Authors: Chen Zhengjia , Zhang Chao , Chen Jianhong , Wang Dongsheng , Tu Jieqi , Van Waes Carter , Saba Nabil F. , Chen Zhuo G. , Chen Zhong
Published: April 2023

Supplementary Table S8
Supplementary Table S3 from The Proteomic Landscape of Growth Factor Signaling Networks Associated with FAT1 Mutations in Head and Neck Cancers
Authors: Chen Zhengjia , Zhang Chao , Chen Jianhong , Wang Dongsheng , Tu Jieqi , Van Waes Carter , Saba Nabil F. , Chen Zhuo G. , Chen Zhong
Published: April 2023

Supplementary Table S3
Table S1 from Epstein–Barr Virus–Encoded Circular RNA CircBART2.2 Promotes Immune Escape of Nasopharyngeal Carcinoma by Regulating PD-L1
Authors: Ge Junshang , Wang Jie , Xiong Fang , Jiang Xianjie , Zhu Kunjie , Wang Yian , Mo Yongzhen , Gong Zhaojian , Zhang Shanshan , He Yi , Li Xiayu , Shi Lei , Guo Can , Wang Fuyan , Zhou Ming , Xiang Bo , Li Yong , Li Guiyuan , Xiong Wei , Zeng Zhaoyang
Published: April 2023

Clinicopathological data for 72 NPC tissues and 20 non-cancerous NPE samples from patients with chronic nasopharyngeal inflammation using RT-PCR.
Figure S1_S9 from Epstein–Barr Virus–Encoded Circular RNA CircBART2.2 Promotes Immune Escape of Nasopharyngeal Carcinoma by Regulating PD-L1
Authors: Ge Junshang , Wang Jie , Xiong Fang , Jiang Xianjie , Zhu Kunjie , Wang Yian , Mo Yongzhen , Gong Zhaojian , Zhang Shanshan , He Yi , Li Xiayu , Shi Lei , Guo Can , Wang Fuyan , Zhou Ming , Xiang Bo , Li Yong , Li Guiyuan , Xiong Wei , Zeng Zhaoyang
Published: April 2023

Figure S1_S9
Supplementary Figure S6 from E2A Modulates Stemness, Metastasis, and Therapeutic Resistance of Breast Cancer
Authors: López-Menéndez Celia , Vázquez-Naharro Alberto , Santos Vanesa , Dubus Pierre , Santamaría Patricia G. , Martínez-Ramírez Ángel , Portillo Francisco , Moreno-Bueno Gema , Faraldo Marisa M. , Cano Amparo
Published: April 2023

Figure S6 and legend
Supplementary Data from Prospective Identification of Elevated Circulating CDCP1 in Patients Years before Onset of Lung Cancer
Authors: Dagnino Sonia , Bodinier Barbara , Guida Florence , Smith-Byrne Karl , Petrovic Dusan , Whitaker Matthew D. , Haugdahl Nøst Therese , Agnoli Claudia , Palli Domenico , Sacerdote Carlotta , Panico Salvatore , Tumino Rosario , Schulze Matthias B. , Johansson Mikael , Keski-Rahkonen Pekka , Scalbert Augustin , Vineis Paolo , Johansson Mattias , Sandanger Torkjel M. , Vermeulen Roel C.H. , Chadeau-Hyam Marc
Published: April 2023

Supplementary Methods, Figures and Tables.
Supplementary Figure S2 from YTHDF1 Promotes Gastric Carcinogenesis by Controlling Translation of FZD7
Authors: Pi Jingnan , Wang Wen , Ji Ming , Wang Xiaoshuang , Wei Xueju , Jin Jing , Liu Tao , Qiang Jiaqi , Qi Zhihong , Li Feng , Liu Yue , Ma Yanni , Si Yanmin , Huo Yue , Gao Yufeng , Chen Yiying , Dong Lei , Su Rui , Chen Jianjun , Rao Shuan , Yi Ping , Yu Shuyang , Wang Fang , Yu Jia
Published: April 2023

Analysis of YTHDF1 in gastric cancer in vivo.
Supplementary Video S1 from Cancer Cell Fitness Is Dynamic
Authors: Lenz Luana S. , Faccioni Juliano L. , Bracco Paula A. , Santos Jephesson A.F. , Pereira Luiza C. , Buss Julieti H. , Tamborindeguy Mauricio T. , Torgo Daphne , Monteiro Thayana , Mantovani Giovana B. , Santo Carolina N. , Marcolin Julia C. , Dalsin Eloisa , Vigo Alvaro , Callegari-Jacques Sidia M. , Silva Andrew O. , Onzi Giovana R. , Begnini Karine R. , Lenz Guido
Published: April 2023

Video describing the basic concepts of DynaFit
Supplementary Figure Legends from YTHDF1 Promotes Gastric Carcinogenesis by Controlling Translation of FZD7
Authors: Pi Jingnan , Wang Wen , Ji Ming , Wang Xiaoshuang , Wei Xueju , Jin Jing , Liu Tao , Qiang Jiaqi , Qi Zhihong , Li Feng , Liu Yue , Ma Yanni , Si Yanmin , Huo Yue , Gao Yufeng , Chen Yiying , Dong Lei , Su Rui , Chen Jianjun , Rao Shuan , Yi Ping , Yu Shuyang , Wang Fang , Yu Jia
Published: April 2023

Supplementary Figure Legends
Supplementary Fig. S6 from Cancer Cell Fitness Is Dynamic
Authors: Lenz Luana S. , Faccioni Juliano L. , Bracco Paula A. , Santos Jephesson A.F. , Pereira Luiza C. , Buss Julieti H. , Tamborindeguy Mauricio T. , Torgo Daphne , Monteiro Thayana , Mantovani Giovana B. , Santo Carolina N. , Marcolin Julia C. , Dalsin Eloisa , Vigo Alvaro , Callegari-Jacques Sidia M. , Silva Andrew O. , Onzi Giovana R. , Begnini Karine R. , Lenz Guido
Published: April 2023

Supplementary Fig. S6 ïƒª Growth characteristics of individual colonies. a, GR (mean {plus minus} variance) of U251 glioma colonies according to the colony size at the beginning of the analyzed GR during the presence of TMZ and b. after the withdrawal of TMZ. In orange, the mean {plus minus} variance GR of all colonies combined c. GR d. variance of untreated or TMZ-treated colonies, either including or excluding all colonies that had at least one event of cell death, as evaluated by the single-cell tracking of colonies in the presence of TMZ. e. GR of U251 cells treated with the indicated concentration of cisplatin, f. CVP of U251 cell line treated with 1 microM of cisplatin or g. 4.5 microM cisplatin.
Table S5 from High-Density, Targeted Monitoring of Tyrosine Phosphorylation Reveals Activated Signaling Networks in Human Tumors
Authors: Stopfer Lauren E. , Flower Cameron T. , Gajadhar Aaron S. , Patel Bhavin , Gallien Sebastien , Lopez-Ferrer Daniel , White Forest M.
Published: April 2023

Quantitative dynamics comparison between SureQuant pTyr, PRM, and DDA.
Supplementary Fig. S4 from Cancer Cell Fitness Is Dynamic
Authors: Lenz Luana S. , Faccioni Juliano L. , Bracco Paula A. , Santos Jephesson A.F. , Pereira Luiza C. , Buss Julieti H. , Tamborindeguy Mauricio T. , Torgo Daphne , Monteiro Thayana , Mantovani Giovana B. , Santo Carolina N. , Marcolin Julia C. , Dalsin Eloisa , Vigo Alvaro , Callegari-Jacques Sidia M. , Silva Andrew O. , Onzi Giovana R. , Begnini Karine R. , Lenz Guido
Published: April 2023

Supplementary Fig. S4 ïƒªTagging of the endogenous locus of Ki67 with EYFP. Sequence coding mVenus-P2A-Neomycin was PCR amplified from the eFlut-mVenus-Neomycin plasmid generously donated by Galit Lahav (Harvard University) and used to insert flanking regions of about 500 nt, amplified with the indicated primers. This was used for homologous recombination in the CRISPR-Cas9 targeted C-terminal region of Ki67 gene.
Supplementary Fig. S3 from Cancer Cell Fitness Is Dynamic
Authors: Lenz Luana S. , Faccioni Juliano L. , Bracco Paula A. , Santos Jephesson A.F. , Pereira Luiza C. , Buss Julieti H. , Tamborindeguy Mauricio T. , Torgo Daphne , Monteiro Thayana , Mantovani Giovana B. , Santo Carolina N. , Marcolin Julia C. , Dalsin Eloisa , Vigo Alvaro , Callegari-Jacques Sidia M. , Silva Andrew O. , Onzi Giovana R. , Begnini Karine R. , Lenz Guido
Published: April 2023

Supplementary Fig. S3ïƒªAnalysis of the desynchronization of colonies of cells expressing FastFUCCI. a, FUCCI simulation for a single, synchronized colony with 4 cells. At a given time point, all cells in the colony will all either be green or not. b, simulating multiple colonies gives rise to multimodal distributions of green cell percentage in colonies. c, adding a phase shift parameter allows cells in each colony to be out of sync, producing percentages of green cells in each colony other than 0% or 100% for a given observation point. d, by modifying the simulation parameters, various frequency distributions of the percentage of green cells can be obtained for several colonies. Note that a, b and c represent three specific time steps of a full simulation run, which must walk all cells around the cell cycle at least once, and produced a final distribution considering all evaluated time steps.
Table S1 from High-Density, Targeted Monitoring of Tyrosine Phosphorylation Reveals Activated Signaling Networks in Human Tumors
Authors: Stopfer Lauren E. , Flower Cameron T. , Gajadhar Aaron S. , Patel Bhavin , Gallien Sebastien , Lopez-Ferrer Daniel , White Forest M.
Published: April 2023

Targeted tyrosine phosphorylated peptides, method parameters, and file map of raw data files.
Supplementary Fig. S1 from Cancer Cell Fitness Is Dynamic
Authors: Lenz Luana S. , Faccioni Juliano L. , Bracco Paula A. , Santos Jephesson A.F. , Pereira Luiza C. , Buss Julieti H. , Tamborindeguy Mauricio T. , Torgo Daphne , Monteiro Thayana , Mantovani Giovana B. , Santo Carolina N. , Marcolin Julia C. , Dalsin Eloisa , Vigo Alvaro , Callegari-Jacques Sidia M. , Silva Andrew O. , Onzi Giovana R. , Begnini Karine R. , Lenz Guido
Published: April 2023

Supplementary Fig. S1 ïƒªDynaFit principles. a, numerical representation of the rationale presented in Fig. 1a. Cells with static growth rates will produce colonies with the same variance in growth rate, regardless of colony size (upper scenario). Colonies containing cells with dynamic growth rates will present a lower variance of growth rates as they grow in number (lower scenario). b, schematic representation of the colony fitness experiment. Single cells are seeded, and colony fitness is quantified between two distinct time points. c, Example of experimental data obtained from b. For DynaFit, the colonies are grouped by their initial colony size. The growth rate variance is measured for each colony size.
Supplementary Data from A Conformation Selective Mode of Inhibiting SRC Improves Drug Efficacy and Tolerability
Authors: Temps Carolin , Lietha Daniel , Webb Emily R. , Li Xue-Feng , Dawson John C. , Muir Morwenna , Macleod Kenneth G. , Valero Teresa , Munro Alison F. , Contreras-Montoya Rafael , Luque-Ortega Juan R. , Fraser Craig , Beetham Henry , Schoenherr Christina , Lopalco Maria , Arends Mark J. , Frame Margaret C. , Qian Bin-Zhi , Brunton Valerie G. , Carragher Neil O. , Unciti-Broceta Asier
Published: April 2023

Supplementary Data from A Conformation Selective Mode of Inhibiting SRC Improves Drug Efficacy and Tolerability
Supplementary Data from Multiparametric Photoacoustic Analysis of Human Thyroid Cancers In Vivo
Authors: Kim Jeesu , Park Byullee , Ha Jeonghoon , Steinberg Idan , Hooper Sarah M. , Jeong Chaiho , Park Eun-Yeong , Choi Wonseok , Liang Tie , Bae Ja Seong , Managuli Ravi , Kim Yongmin , Gambhir Sanjiv S. , Lim Dong-Jun , Kim Chulhong
Published: April 2023

Supplementary movie 1. Boundary selection software
Supplementary File S2 from Fragmentation of Small-Cell Lung Cancer Regulatory States in Heterotypic Microenvironments
Authors: Schaff Dylan L. , Singh Shambhavi , Kim Kee-Beom , Sutcliffe Matthew D. , Park Kwon-Sik , Janes Kevin A.
Published: April 2023

Hallmark gene set enrichments for transcripts with human orthologs in MSigDB. Individual worksheets are for SCLC spheroids of KP1-GFP cells (Sheet 1) or Chga-GFP;Rbâ^†/â^†;p53â^†/â^†;p130â^†/+;Crebbp-/- (RPC) cells (Sheet 2) and KP1-GFP liver colonies in athymic nude (Sheet 3) or C57BL/6 x 129S F1 hybrid (Sheet 4) animals.
Supplementary Data from NPM–ALK-Induced Reprogramming of Mature TCR-Stimulated T Cells Results in Dedifferentiation and Malignant Transformation
Authors: Pawlicki Jan M. , Cookmeyer David L. , Maseda Damian , Everett John K. , Wei Fang , Kong Hong , Zhang Qian , Wang Hong Y. , Tobias John W. , Walter David M. , Zullo Kelly M. , Javaid Sarah , Watkins Amanda , Wasik Mariusz A. , Bushman Frederic D. , Riley James L.
Published: April 2023

Supplemental Figures and Tables
Supplementary Figure 8 from Hedgehog Signaling Regulates Metabolism and Polarization of Mammary Tumor-Associated Macrophages
Authors: Hinshaw Dominique C. , Hanna Ann , Lama-Sherpa Tshering , Metge Brandon , Kammerud Sarah C. , Benavides Gloria A. , Kumar Atul , Alsheikh Heba Allah , Mota Mateus , Chen Dongquan , Ballinger Scott W. , Rathmell Jeffrey C. , Ponnazhagan Selvarangan , Darley-Usmar Victor , Samant Rajeev S. , Shevde Lalita A.
Published: April 2023

Supplementary Figure 8
Table S7 from EGFR Activates a TAZ-Driven Oncogenic Program in Glioblastoma
Authors: Gao Minling , Fu Yi , Zhou Weiqiang , Gui Gege , Lal Bachuchu , Li Yunqing , Xia Shuli , Ji Hongkai , Eberhart Charles G. , Laterra John , Ying Mingyao
Published: April 2023

KEGG pathways enriched in TAZ-Up and TAZ-Down genes (related to Figure 5).
Table S6 from EGFR Activates a TAZ-Driven Oncogenic Program in Glioblastoma
Authors: Gao Minling , Fu Yi , Zhou Weiqiang , Gui Gege , Lal Bachuchu , Li Yunqing , Xia Shuli , Ji Hongkai , Eberhart Charles G. , Laterra John , Ying Mingyao
Published: April 2023

TAZ-Up and TAZ-Down genes (related to Figure 4).
Supplementary Figure 5 from Hedgehog Signaling Regulates Metabolism and Polarization of Mammary Tumor-Associated Macrophages
Authors: Hinshaw Dominique C. , Hanna Ann , Lama-Sherpa Tshering , Metge Brandon , Kammerud Sarah C. , Benavides Gloria A. , Kumar Atul , Alsheikh Heba Allah , Mota Mateus , Chen Dongquan , Ballinger Scott W. , Rathmell Jeffrey C. , Ponnazhagan Selvarangan , Darley-Usmar Victor , Samant Rajeev S. , Shevde Lalita A.
Published: April 2023

Supplementary Figure 5
Supplementary Figure 4 from Hedgehog Signaling Regulates Metabolism and Polarization of Mammary Tumor-Associated Macrophages
Authors: Hinshaw Dominique C. , Hanna Ann , Lama-Sherpa Tshering , Metge Brandon , Kammerud Sarah C. , Benavides Gloria A. , Kumar Atul , Alsheikh Heba Allah , Mota Mateus , Chen Dongquan , Ballinger Scott W. , Rathmell Jeffrey C. , Ponnazhagan Selvarangan , Darley-Usmar Victor , Samant Rajeev S. , Shevde Lalita A.
Published: April 2023

Supplementary Figure 4
Table S2 from EGFR Activates a TAZ-Driven Oncogenic Program in Glioblastoma
Authors: Gao Minling , Fu Yi , Zhou Weiqiang , Gui Gege , Lal Bachuchu , Li Yunqing , Xia Shuli , Ji Hongkai , Eberhart Charles G. , Laterra John , Ying Mingyao
Published: April 2023

RNA-Seq results: DE genes in GBM1B cells with +/- 24h EGF treatment (related to Figure 4).
Supplementary Figure 1 from Hedgehog Signaling Regulates Metabolism and Polarization of Mammary Tumor-Associated Macrophages
Authors: Hinshaw Dominique C. , Hanna Ann , Lama-Sherpa Tshering , Metge Brandon , Kammerud Sarah C. , Benavides Gloria A. , Kumar Atul , Alsheikh Heba Allah , Mota Mateus , Chen Dongquan , Ballinger Scott W. , Rathmell Jeffrey C. , Ponnazhagan Selvarangan , Darley-Usmar Victor , Samant Rajeev S. , Shevde Lalita A.
Published: April 2023

Supplementary Figure 1
Supplementary Table 3 from Targeting DDX3X Triggers Antitumor Immunity via a dsRNA-Mediated Tumor-Intrinsic Type I Interferon Response
Authors: Choi Hyeongjwa , Kwon Juntae , Cho Min Soon , Sun Yifan , Zheng Xiaofeng , Wang Jing , Bouker Kerrie B. , Casey John L. , Atkins Michael B. , Toretsky Jeffrey , Han Cecil
Published: April 2023

Supplementary Table 3
Supplementary Table 6 from Whole-Exome Sequencing of Radiation-Induced Thymic Lymphoma in Mouse Models Identifies Notch1 Activation as a Driver of p53 Wild-Type Lymphoma
Authors: Lee Chang-Lung , Brock Kennedy D. , Hasapis Stephanie , Zhang Dadong , Sibley Alexander B. , Qin Xiaodi , Gresham Jeremy S. , Caraballo Isibel , Luo Lixia , Daniel Andrea R. , Hilton Matthew J. , Owzar Kouros , Kirsch David G.
Published: April 2023

Summary of results from targeted sequencing
Supplementary Table 5 from Whole-Exome Sequencing of Radiation-Induced Thymic Lymphoma in Mouse Models Identifies Notch1 Activation as a Driver of p53 Wild-Type Lymphoma
Authors: Lee Chang-Lung , Brock Kennedy D. , Hasapis Stephanie , Zhang Dadong , Sibley Alexander B. , Qin Xiaodi , Gresham Jeremy S. , Caraballo Isibel , Luo Lixia , Daniel Andrea R. , Hilton Matthew J. , Owzar Kouros , Kirsch David G.
Published: April 2023

Somatic mutations and CNVs in COSMIC genes
Supplementary Table 3 from Whole-Exome Sequencing of Radiation-Induced Thymic Lymphoma in Mouse Models Identifies Notch1 Activation as a Driver of p53 Wild-Type Lymphoma
Authors: Lee Chang-Lung , Brock Kennedy D. , Hasapis Stephanie , Zhang Dadong , Sibley Alexander B. , Qin Xiaodi , Gresham Jeremy S. , Caraballo Isibel , Luo Lixia , Daniel Andrea R. , Hilton Matthew J. , Owzar Kouros , Kirsch David G.
Published: April 2023

Called somatic copy number alterations
Supplementary Figures from Whole-Exome Sequencing of Radiation-Induced Thymic Lymphoma in Mouse Models Identifies Notch1 Activation as a Driver of p53 Wild-Type Lymphoma
Authors: Lee Chang-Lung , Brock Kennedy D. , Hasapis Stephanie , Zhang Dadong , Sibley Alexander B. , Qin Xiaodi , Gresham Jeremy S. , Caraballo Isibel , Luo Lixia , Daniel Andrea R. , Hilton Matthew J. , Owzar Kouros , Kirsch David G.
Published: April 2023

Supplementary Figures_all
Supplementary Data from Hexavalent TRAIL Fusion Protein Eftozanermin Alfa Optimally Clusters Apoptosis-Inducing TRAIL Receptors to Induce On-Target Antitumor Activity in Solid Tumors
Authors: Phillips Darren C. , Buchanan Fritz G. , Cheng Dong , Solomon Larry R. , Xiao Yu , Xue John , Tahir Stephen K. , Smith Morey L. , Zhang Haichao , Widomski Deborah , Abraham Vivek C. , Xu Nan , Liu Zhihong , Zhou Li , DiGiammarino Enrico , Lu Xin , Rudra-Ganguly Nandini , Trela Bruce , Morgan-Lappe Susan E.
Published: April 2023

Supplementary file containing all supplementary figures and tables
Supplementary Data from Transient Competitive Inhibition Bypasses the Binding Site Barrier to Improve Tumor Penetration of Trastuzumab and Enhance T-DM1 Efficacy
Authors: Bordeau Brandon M. , Yang Yujie , Balthasar Joseph P.
Published: April 2023

Supplemental methods, MATLAB code, supplemental figures
Supplementary Table S3 from Valosin-Containing Protein Stabilizes Mutant p53 to Promote Pancreatic Cancer Growth
Authors: Wang Jieqiong , Chen Yajie , Huang Canhua , Hao Qian , Zeng Shelya X. , Omari Sara , Zhang Yu , Zhou Xiang , Lu Hua
Published: April 2023

Supplementary Table S3 shows protein peptides identified by LC-MS/MS after IP.
Supplementary Data from STK11/LKB1 Loss of Function Is Associated with Global DNA Hypomethylation and S-Adenosyl-Methionine Depletion in Human Lung Adenocarcinoma
Authors: Koenig Michael J. , Agana Bernice A. , Kaufman Jacob M. , Sharpnack Michael F. , Wang Walter Z. , Weigel Christoph , Navarro Fabio C.P. , Amann Joseph M. , Cacciato Nicole , Arasada Rajeswara Rao , Gerstein Mark B. , Wysocki Vicki H. , Oakes Christopher , Carbone David P.
Published: April 2023

Figures S1-S13
Supplementary Figures S1-S13 from RNA Splicing Factors SRRM3 and SRRM4 Distinguish Molecular Phenotypes of Castration-Resistant Neuroendocrine Prostate Cancer
Authors: Labrecque Mark P. , Brown Lisha G. , Coleman Ilsa M. , Lakely Bryce , Brady Nicholas J. , Lee John K. , Nguyen Holly M. , Li Dapei , Hanratty Brian , Haffner Michael C. , Rickman David S. , True Lawrence D. , Lin Daniel W. , Lam Hung-Ming , Alumkal Joshi J. , Corey Eva , Nelson Peter S. , Morrissey Colm
Published: April 2023

All Supplementary Figures. Figures S1-S13
Figure S5 from MYCN-Amplified Neuroblastoma Is Addicted to Iron and Vulnerable to Inhibition of the System Xc-/Glutathione Axis
Authors: Floros Konstantinos V. , Cai JinYang , Jacob Sheeba , Kurupi Richard , Fairchild Carter K. , Shende Mayuri , Coon Colin M. , Powell Krista M. , Belvin Benjamin R. , Hu Bin , Puchalapalli Madhavi , Ramamoorthy Sivapriya , Swift Kimberly , Lewis Janina P. , Dozmorov Mikhail G. , Glod John , Koblinski Jennifer E. , Boikos Sosipatros A. , Faber Anthony C.
Published: April 2023

Figure S5. Amplified MYCN sensitizes neuroblastomas to auranofin. Auranofin increases iron and glutathione levels and induces ROS-dependent ferroptotic cell death in MYCN-amplified NBs.
Figure S3 from MYCN-Amplified Neuroblastoma Is Addicted to Iron and Vulnerable to Inhibition of the System Xc-/Glutathione Axis
Authors: Floros Konstantinos V. , Cai JinYang , Jacob Sheeba , Kurupi Richard , Fairchild Carter K. , Shende Mayuri , Coon Colin M. , Powell Krista M. , Belvin Benjamin R. , Hu Bin , Puchalapalli Madhavi , Ramamoorthy Sivapriya , Swift Kimberly , Lewis Janina P. , Dozmorov Mikhail G. , Glod John , Koblinski Jennifer E. , Boikos Sosipatros A. , Faber Anthony C.
Published: April 2023

Figure S3. Auranofin and sulfasalazine sensitize MYCN NBs to ferroptosis in vivo.
Figure S2 from MYCN-Amplified Neuroblastoma Is Addicted to Iron and Vulnerable to Inhibition of the System Xc-/Glutathione Axis
Authors: Floros Konstantinos V. , Cai JinYang , Jacob Sheeba , Kurupi Richard , Fairchild Carter K. , Shende Mayuri , Coon Colin M. , Powell Krista M. , Belvin Benjamin R. , Hu Bin , Puchalapalli Madhavi , Ramamoorthy Sivapriya , Swift Kimberly , Lewis Janina P. , Dozmorov Mikhail G. , Glod John , Koblinski Jennifer E. , Boikos Sosipatros A. , Faber Anthony C.
Published: April 2023

Figure S2. MYCN increases activity of the glutathione pathway and inhibition of the system xc- sensitizes specifically the MYCN-amplified NBs.
Figure S1 from MYCN-Amplified Neuroblastoma Is Addicted to Iron and Vulnerable to Inhibition of the System Xc-/Glutathione Axis
Authors: Floros Konstantinos V. , Cai JinYang , Jacob Sheeba , Kurupi Richard , Fairchild Carter K. , Shende Mayuri , Coon Colin M. , Powell Krista M. , Belvin Benjamin R. , Hu Bin , Puchalapalli Madhavi , Ramamoorthy Sivapriya , Swift Kimberly , Lewis Janina P. , Dozmorov Mikhail G. , Glod John , Koblinski Jennifer E. , Boikos Sosipatros A. , Faber Anthony C.
Published: April 2023

Figure S1. Neuroblastomas are sensitive to GPX4 inhibition. L-Buthionine-sulfoximine (BSO) induces ferroptotic cell death in MYCN NBs.
Supplementary Data from Stress-Mediated Reprogramming of Prostate Cancer One-Carbon Cycle Drives Disease Progression
Authors: Pällmann Nora , Deng Ke , Livgård Marte , Tesikova Martina , Jin Yixin , Frengen Nicolai Sebastian , Kahraman Nermin , Mokhlis Hamada M. , Ozpolat Bulent , Kildal Wanja , Danielsen Havard Emil , Fazli Ladan , Rennie Paul S. , Banerjee Partha P. , Üren Aykut , Jin Yang , Kuzu Omer F. , Saatcioglu Fahri
Published: April 2023

Supplementary Materials and Methods
Supplementary Table 3 from Evasion of Innate Immunity Contributes to Small Cell Lung Cancer Progression and Metastasis
Authors: Zhu Mingrui , Huang Yi , Bender Matthew E. , Girard Luc , Kollipara Rahul , Eglenen-Polat Buse , Naito Yujiro , Savage Trisha K. , Huffman Kenneth E. , Koyama Shohei , Kumanogoh Atsushi , Minna John D. , Johnson Jane E. , Akbay Esra A.
Published: April 2023

RNA sequencing result
Supplementary Data from Stress-Mediated Reprogramming of Prostate Cancer One-Carbon Cycle Drives Disease Progression
Authors: Pällmann Nora , Deng Ke , Livgård Marte , Tesikova Martina , Jin Yixin , Frengen Nicolai Sebastian , Kahraman Nermin , Mokhlis Hamada M. , Ozpolat Bulent , Kildal Wanja , Danielsen Havard Emil , Fazli Ladan , Rennie Paul S. , Banerjee Partha P. , Üren Aykut , Jin Yang , Kuzu Omer F. , Saatcioglu Fahri
Published: April 2023

Supplementary Tables
Supplementary Table 2 from Evasion of Innate Immunity Contributes to Small Cell Lung Cancer Progression and Metastasis
Authors: Zhu Mingrui , Huang Yi , Bender Matthew E. , Girard Luc , Kollipara Rahul , Eglenen-Polat Buse , Naito Yujiro , Savage Trisha K. , Huffman Kenneth E. , Koyama Shohei , Kumanogoh Atsushi , Minna John D. , Johnson Jane E. , Akbay Esra A.
Published: April 2023

Antibody list
Supplementary Table 1 from Evasion of Innate Immunity Contributes to Small Cell Lung Cancer Progression and Metastasis
Authors: Zhu Mingrui , Huang Yi , Bender Matthew E. , Girard Luc , Kollipara Rahul , Eglenen-Polat Buse , Naito Yujiro , Savage Trisha K. , Huffman Kenneth E. , Koyama Shohei , Kumanogoh Atsushi , Minna John D. , Johnson Jane E. , Akbay Esra A.
Published: April 2023

Patient classification
Supplementary Figures from Evasion of Innate Immunity Contributes to Small Cell Lung Cancer Progression and Metastasis
Authors: Zhu Mingrui , Huang Yi , Bender Matthew E. , Girard Luc , Kollipara Rahul , Eglenen-Polat Buse , Naito Yujiro , Savage Trisha K. , Huffman Kenneth E. , Koyama Shohei , Kumanogoh Atsushi , Minna John D. , Johnson Jane E. , Akbay Esra A.
Published: April 2023

Supplementary figures and legends
Supplementary Information from Suppression of ACADM-Mediated Fatty Acid Oxidation Promotes Hepatocellular Carcinoma via Aberrant CAV1/SREBP1 Signaling
Authors: Ma Angel P.Y. , Yeung Cherlie L.S. , Tey Sze Keong , Mao Xiaowen , Wong Samuel W.K. , Ng Tung Him , Ko Frankie C.F. , Kwong Ernest M.L. , Tang Alexander H.N. , Ng Irene Oi-Lin , Cai Shao Hang , Yun Jing Ping , Yam Judy W.P.
Published: April 2023

Supplementary Materials and Methods, Figures and Tables
Table S6 from Fusobacterium Nucleatum Promotes the Development of Colorectal Cancer by Activating a Cytochrome P450/Epoxyoctadecenoic Acid Axis via TLR4/Keap1/NRF2 Signaling
Authors: Kong Cheng , Yan Xuebing , Zhu Yefei , Zhu Huiyuan , Luo Ying , Liu Peipei , Ferrandon Sylvain , Kalady Matthew F. , Gao Renyuan , He Jide , Yin Fang , Qu Xiao , Zheng Jiayi , Gao Yaohui , Wei Qing , Ma Yanlei , Liu Jun-Yan , Qin Huanlong
Published: April 2023

Table S6 shows sequence alignment between Cyp2j5 knockout mice and wild type mice.
Table S4 from Fusobacterium Nucleatum Promotes the Development of Colorectal Cancer by Activating a Cytochrome P450/Epoxyoctadecenoic Acid Axis via TLR4/Keap1/NRF2 Signaling
Authors: Kong Cheng , Yan Xuebing , Zhu Yefei , Zhu Huiyuan , Luo Ying , Liu Peipei , Ferrandon Sylvain , Kalady Matthew F. , Gao Renyuan , He Jide , Yin Fang , Qu Xiao , Zheng Jiayi , Gao Yaohui , Wei Qing , Ma Yanlei , Liu Jun-Yan , Qin Huanlong
Published: April 2023

Table S4 shows the correlation of serum 12,13-EpOME with seven screened fecal bacteria in CRC patients.
Supplementary Data from Radiation-Induced Phosphorylation of a Prion-Like Domain Regulates Transformation by FUS-CHOP
Authors: Chen Mark , Foster Joseph P. , Lock Ian C. , Leisenring Nathan H. , Daniel Andrea R. , Floyd Warren , Xu Eric , Davis Ian J. , Kirsch David G.
Published: April 2023

Supplementary data figures, tables, and methods.
Figure S1 from Diet Alters Entero-Mammary Signaling to Regulate the Breast Microbiome and Tumorigenesis
Authors: Soto-Pantoja David R. , Gaber Mohamed , Arnone Alana A. , Bronson Steven M. , Cruz-Diaz Nildris , Wilson Adam S. , Clear Kenysha Y.J. , Ramirez Manuel U. , Kucera Gregory L. , Levine Edward A. , Lelièvre Sophie A. , Chaboub Lesley , Chiba Akiko , Yadav Hariom , Vidi Pierre-Alexandre , Cook Katherine L.
Published: April 2023

BALB/c DMBA tumors were stained against Ki67 (A) and F4/80 (B) to determine effects of diet and microbiota on primary tumor proliferation and tumor-associated macrophage populations.
Supplemental Table 4 from LSD1 and Aberrant DNA Methylation Mediate Persistence of Enteroendocrine Progenitors That Support BRAF-Mutant Colorectal Cancer
Authors: Miller Samuel A. , Policastro Robert A. , Sriramkumar Shruthi , Lai Tim , Huntington Thomas D. , Ladaika Christopher A. , Kim Daeho , Hao Chunhai , Zentner Gabriel E. , O'Hagan Heather M.
Published: April 2023

Statistical analysis of pathological subtype enrichment in TCGA COAD BRAF mutant, KRAS mutant, and all other tumor groups.
Supplemental Table 3 from LSD1 and Aberrant DNA Methylation Mediate Persistence of Enteroendocrine Progenitors That Support BRAF-Mutant Colorectal Cancer
Authors: Miller Samuel A. , Policastro Robert A. , Sriramkumar Shruthi , Lai Tim , Huntington Thomas D. , Ladaika Christopher A. , Kim Daeho , Hao Chunhai , Zentner Gabriel E. , O'Hagan Heather M.
Published: April 2023

Statistical analysis of ATOH1 and MUC2 expression in TCGA COAD comparing Normal, BRAF mutant, KRAS mutant, and all other tumors.
FigureS7 from MTAP Deficiency–Induced Metabolic Reprogramming Creates a Vulnerability to Cotargeting De Novo Purine Synthesis and Glycolysis in Pancreatic Cancer
Authors: Hu Qiangsheng , Qin Yi , Ji Shunrong , Shi Xiuhui , Dai Weixing , Fan Guixiong , Li Shuo , Xu Wenyan , Liu Wensheng , Liu Mengqi , Zhang Zheng , Ye Zeng , Zhou Zhijun , Yang Jingxuan , Zhuo Qifeng , Yu Xianjun , Li Min , Xu Xiaowu
Published: April 2023

Supplementary Figure7
Supplementary Table 2 from Nicotinamide Mononucleotide Prevents Cisplatin-Induced Cognitive Impairments
Authors: Yoo Ki Hyun , Tang Jason J. , Rashid Mohammad Abdur , Cho Chang Hoon , Corujo-Ramirez Ana , Choi Jonghoon , Bae Mun Gyeong , Brogren Danielle , Hawse John R. , Hou Xiaonan , Weroha S. John , Oliveros Alfredo , Kirkeby Lindsey A. , Baur Joseph A. , Jang Mi-Hyeon
Published: April 2023

Detailed information for statistical analysis
FigureS5 from MTAP Deficiency–Induced Metabolic Reprogramming Creates a Vulnerability to Cotargeting De Novo Purine Synthesis and Glycolysis in Pancreatic Cancer
Authors: Hu Qiangsheng , Qin Yi , Ji Shunrong , Shi Xiuhui , Dai Weixing , Fan Guixiong , Li Shuo , Xu Wenyan , Liu Wensheng , Liu Mengqi , Zhang Zheng , Ye Zeng , Zhou Zhijun , Yang Jingxuan , Zhuo Qifeng , Yu Xianjun , Li Min , Xu Xiaowu
Published: April 2023

Supplementary Figure5
Supplementary Information from Nicotinamide Mononucleotide Prevents Cisplatin-Induced Cognitive Impairments
Authors: Yoo Ki Hyun , Tang Jason J. , Rashid Mohammad Abdur , Cho Chang Hoon , Corujo-Ramirez Ana , Choi Jonghoon , Bae Mun Gyeong , Brogren Danielle , Hawse John R. , Hou Xiaonan , Weroha S. John , Oliveros Alfredo , Kirkeby Lindsey A. , Baur Joseph A. , Jang Mi-Hyeon
Published: April 2023

Additional materials and methods Supplementary Figures
FigureS2 from MTAP Deficiency–Induced Metabolic Reprogramming Creates a Vulnerability to Cotargeting De Novo Purine Synthesis and Glycolysis in Pancreatic Cancer
Authors: Hu Qiangsheng , Qin Yi , Ji Shunrong , Shi Xiuhui , Dai Weixing , Fan Guixiong , Li Shuo , Xu Wenyan , Liu Wensheng , Liu Mengqi , Zhang Zheng , Ye Zeng , Zhou Zhijun , Yang Jingxuan , Zhuo Qifeng , Yu Xianjun , Li Min , Xu Xiaowu
Published: April 2023

Supplementary Figure2