bluuebunny/crossref_metadata_2025 huggingface dataset:
Differential regulation of breast cancer bone metastasis by PARP1 and PARP2
Authors: Zuo Hao , Yang Dengbao , Yang Qiwen , Tang Haidong , Fu Yang-Xin , Wan Yihong
Published: March 2020

PARP1 and PARP2 dual inhibitors, such as olaparib, have been recently FDA approved for the treatment of advanced breast and ovarian cancers. However, their effects on bone mass and bone metastasis are unknown. Here we show that olaparib increases breast cancer bone metastasis through PARP2, but not PARP1, specifically in the myeloid lineage, but not in the cancer cells. Olaparib treatment or PARP1/2 deletion promotes osteoclast differentiation and bone loss. Intriguingly, myeloid deletion of PARP2, but not PARP1, increases the population of immature myeloid cells in bone marrow, and impairs the expression of chemokines such as CCL3 through enhancing the transcriptional repression by β-catenin. Compromised CCL3 production in turn creates an immune-suppressive milieu by altering T cell subpopulations. Our findings warrant careful examination of current PARP inhibitors on bone metastasis and bone loss, and suggest cotreatment with CCL3, β-catenin inhibitors, anti-RANKL or bisphosphonates as potential combination therapy for PARP inhibitors.
Plate-nanolattices at the theoretical limit of stiffness and strength
Authors: Crook Cameron , Bauer Jens , Guell Izard Anna , Santos de Oliveira Cristine , Martins de Souza e Silva Juliana , Berger Jonathan B. , Valdevit Lorenzo
Published: March 2020

Though beam-based lattices have dominated mechanical metamaterials for the past two decades, low structural efficiency limits their performance to fractions of the Hashin-Shtrikman and Suquet upper bounds, i.e. the theoretical stiffness and strength limits of any isotropic cellular topology, respectively. While plate-based designs are predicted to reach the upper bounds, experimental verification has remained elusive due to significant manufacturing challenges. Here, we present a new class of nanolattices, constructed from closed-cell plate-architectures. Carbon plate-nanolattices are fabricated via two-photon lithography and pyrolysis and shown to reach the Hashin-Shtrikman and Suquet upper bounds, via in situ mechanical compression, nano-computed tomography and micro-Raman spectroscopy. Demonstrating specific strengths surpassing those of bulk diamond and average performance improvements up to 639% over the best beam-nanolattices, this study provides detailed experimental evidence of plate architectures as a superior mechanical metamaterial topology.
Adar RNA editing-dependent and -independent effects are required for brain and innate immune functions in Drosophila
Authors: Deng Patricia , Khan Anzer , Jacobson Dionna , Sambrani Nagraj , McGurk Leeanne , Li Xianghua , Jayasree Aswathy , Hejatko Jan , Shohat-Ophir Galit , O’Connell Mary A. , Li Jin Billy , Keegan Liam P.
Published: March 2020

ADAR RNA editing enzymes are high-affinity dsRNA-binding proteins that deaminate adenosines to inosines in pre-mRNA hairpins and also exert editing-independent effects. We generated a Drosophila AdarE374A mutant strain encoding a catalytically inactive Adar with CRISPR/Cas9. We demonstrate that Adar adenosine deamination activity is necessary for normal locomotion and prevents age-dependent neurodegeneration. The catalytically inactive protein, when expressed at a higher than physiological level, can rescue neurodegeneration in Adar mutants, suggesting also editing-independent effects. Furthermore, loss of Adar RNA editing activity leads to innate immune induction, indicating that Drosophila Adar, despite being the homolog of mammalian ADAR2, also has functions similar to mammalian ADAR1. The innate immune induction in fly Adar mutants is suppressed by silencing of Dicer-2, which has a RNA helicase domain similar to MDA5 that senses unedited dsRNAs in mammalian Adar1 mutants. Our work demonstrates that the single Adar enzyme in Drosophila unexpectedly has dual functions.
Downsizing of animal communities triggers stronger functional than structural decay in seed-dispersal networks
Authors: Donoso Isabel , Sorensen Marjorie C. , Blendinger Pedro G. , Kissling W. Daniel , Neuschulz Eike Lena , Mueller Thomas , Schleuning Matthias
Published: March 2020

Downsizing of animal communities due to defaunation is prevalent in many ecosystems. Yet, we know little about its consequences for ecosystem functions such as seed dispersal. Here, we use eight seed-dispersal networks sampled across the Andes and simulate how downsizing of avian frugivores impacts structural network robustness and seed dispersal. We use a trait-based modeling framework to quantify the consequences of downsizing—relative to random extinctions—for the number of interactions and secondary plant extinctions (as measures of structural robustness) and for long-distance seed dispersal (as a measure of ecosystem function). We find that downsizing leads to stronger functional than structural losses. For instance, 10% size-structured loss of bird species results in almost 40% decline of long-distance seed dispersal, but in less than 10% of structural loss. Our simulations reveal that measures of the structural robustness of ecological networks underestimate the consequences of animal extinction and downsizing for ecosystem functioning.
Tunable macroscale structural superlubricity in two-layer graphene via strain engineering
Authors: Androulidakis Charalampos , Koukaras Emmanuel N. , Paterakis George , Trakakis George , Galiotis Costas
Published: March 2020

Achieving structural superlubricity in graphitic samples of macroscale size is particularly challenging due to difficulties in sliding large contact areas of commensurate stacking domains. Here, we show the presence of macroscale structural superlubricity between two randomly stacked graphene layers produced by both mechanical exfoliation and chemical vapour deposition. By measuring the shifts of Raman peaks under strain we estimate the values of frictional interlayer shear stress (ILSS) in the superlubricity regime (mm scale) under ambient conditions. The random incommensurate stacking, the presence of wrinkles and the mismatch in the lattice constant between two graphene layers induced by the tensile strain differential are considered responsible for the facile shearing at the macroscale. Furthermore, molecular dynamic simulations show that the stick-slip behaviour does not hold for incommensurate chiral shearing directions for which the ILSS decreases substantially, supporting the experimental observations. Our results pave the way for overcoming several limitations in achieving macroscale superlubricity using graphene.
Treatment with Anaerobutyricum soehngenii: a pilot study of safety and dose–response effects on glucose metabolism in human subjects with metabolic syndrome
Authors: Gilijamse Pim W. , Hartstra Annick V. , Levin Evgeni , Wortelboer Koen , Serlie Mireille J. , Ackermans Mariette T. , Herrema Hilde , Nederveen Aart J. , Imangaliyev Sultan , Aalvink Steven , Sommer Morton , Levels Han , Stroes Erik S. G. , Groen Albert K. , Kemper Marleen , de Vos Willem M. , Nieuwdorp Max , Prodan Andrei
Published: March 2020

Dysbiosis of the intestinal microbiota has been implicated in insulin resistance, although evidence regarding causality in humans is scarce. We performed a phase I/II dose-finding and safety study on the effect of oral intake of the anaerobic butyrogenic strain Anaerobutyricum soehngenii on glucose metabolism in 24 subjects with metabolic syndrome. We found that treatment with A. soehngenii was safe and observed a significant correlation between the measured fecal abundance of administered A. soehngenii and improvement in peripheral insulin sensitivity after 4 weeks of treatment. This was accompanied by an altered microbiota composition and a change in bile acid metabolism. Finally, we show that metabolic response upon administration of A. soehngenii (defined as improved insulin sensitivity 4 weeks after A. soehngenii intake) is dependent on microbiota composition at baseline. These data in humans are promising, but additional studies are needed to reproduce our findings and to investigate long-term effects, as well as other modes of delivery.
A global ensemble of ocean wave climate projections from CMIP5-driven models
Authors: Morim Joao , Trenham Claire , Hemer Mark , Wang Xiaolan L. , Mori Nobuhito , Casas-Prat Mercè , Semedo Alvaro , Shimura Tomoya , Timmermans Ben , Camus Paula , Bricheno Lucy , Mentaschi Lorenzo , Dobrynin Mikhail , Feng Yang , Erikson Li
Published: March 2020

This dataset, produced through the Coordinated Ocean Wave Climate Project (COWCLIP) phase 2, represents the first coordinated multivariate ensemble of 21st Century global wind-wave climate projections available (henceforth COWCLIP2.0). COWCLIP2.0 comprises general and extreme statistics of significant wave height (HS), mean wave period (Tm), and mean wave direction (θm) computed over time-slices 1979–2004 and 2081–2100, at different frequency resolutions (monthly, seasonally and annually). The full ensemble comprising 155 global wave climate simulations is obtained from ten CMIP5-based state-of-the-art wave climate studies and provides data derived from alternative wind-wave downscaling methods, and different climate-model forcing and future emissions scenarios. The data has been produced, and processed, under a specific framework for consistency and quality, and follows CMIP5 Data Reference Syntax, Directory structures, and Metadata requirements. Technical comparison of model skill against 26 years of global satellite measurements of significant wave height has been undertaken at global and regional scales. This new dataset provides support for future broad scale coastal hazard and vulnerability assessments and climate adaptation studies in many offshore and coastal engineering applications.
Genetic and linguistic non-correspondence suggests evidence for collective social climbing in the Kol tribe of South Asia
Authors: Srivastava Anshika , Singh Prajjval Pratap , Bandopadhyay Audditiya , Singh Pooja , Das Debashruti , Tamang Rakesh , Chaubey Akhilesh Kumar , Shrivastava Pankaj , van Driem George , Chaubey Gyaneshwer
Published: March 2020

Both classical and recent genetic studies have unanimously concluded that the genetic landscape of South Asia is unique. At long distances the ‘isolation-by-distance’ model appears to correspond well with the genetic data, whereas at short distances several other factors, including the caste, have been shown to be strong determinant factors. In addition with these, tribal populations speaking various languages add yet another layer of genetic complexity. The Kol are the third most populous tribal population in India, comprising communities speaking Austroasiatic languages of the Northern Munda branch. Yet, the Kol have not hitherto undergone in-depth genetic analysis. In the present study, we have analysed two Kol groups of central and western India for hundreds thousands of autosomal and several mitochondrial DNA makers to infer their fine genetic structure and affinities to other Eurasian populations. In contrast, with their known linguistic affinity, the Kol share their more recent common ancestry with the Indo-European and Dravidian speaking populations. The geographic-genetic neighbour tests at both the temporal and spatial levels have suggested some degree of excess allele sharing of Kol1 with Kol2, thereby indicating their common stock. Our extensive analysis on the Kol ethnic group shows South Asia to be a living genetics lab, where real-time tests can be performed on existing hypotheses.
The choice of anaesthesia for glioblastoma surgery does not impact the time to recurrence
Authors: Grau Stefan J. , Löhr Mario , Taurisano Valeria , Trautner Herbert , Timmer Marco , Schwab Stephanie G. , Hampl Jürgen , Annecke Thorsten
Published: March 2020

Anaesthetics used during cancer surgery may influence tumour cells and immunological response. The aim of this study was to evaluate a potential influence of the anaesthetic method (inhaled anaesthetics versus total-intravenous anaesthesia using propofol) on recurrence-free and overall survival in glioblastoma patients. We retrospectively identified patients undergoing resection of contrast enhancing glioblastoma under general anaesthesia followed by standard adjuvant treatment between January 2010 and February 2017 at two University Hospitals. Matched pairs of patients receiving either balanced with volatile anaesthetics or total intravenous anaesthesia were generated according to the known prognostic factors (extent of resection, methyl-guanine-methyl-transferase (MGMT) promoter methylation, age, Karnofsky performance score). Groups were compared using chi-square and Whitney-Man-U test. Time to recurrence was calculated using Kaplan Meier estimates. Log Rank test was used to assess the influence of the anaesthetic method. One hundred and fifty-eight (79:79) patients were included. Groups showed no significant difference in recurrence-free (volatiles: 8.0 (95% CI 6.5–9.8) vs. propofol: 8.4 (95% CI 7.9–10.1) months; p = 0.54) or overall survival (propofol: 17.4 (95% CI 14.0–20.7) vs. volatiles: 16.9 (95% CI 13.9–20.1) months; p = 0.85). In contrast to potential beneficial effects in some other solid tumours, the choice of anaesthetic method had no impact on survival in patients with glioblastoma in a well-defined cohort.
A genome-wide identification, characterization and functional analysis of salt-related long non-coding RNAs in non-model plant Pistacia vera L. using transcriptome high throughput sequencing
Authors: Jannesar Masoomeh , Seyedi Seyed Mahdi , Moazzam Jazi Maryam , Niknam Vahid , Ebrahimzadeh Hassan , Botanga Christopher
Published: March 2020

Long non-coding RNAs (lncRNAs) play crucial roles in regulating gene expression in response to plant stresses. Given the importance regulatory roles of lncRNAs, providing methods for predicting the function of these molecules, especially in non-model plants, is strongly demanded by researchers. Here, we constructed a reference sequence for lncRNAs in P. vera (Pistacia vera L.) with 53220 transcripts. In total, we identified 1909 and 2802 salt responsive lncRNAs in Ghazvini, a salt tolerant cultivar, after 6 and 24 h salt treatment, respectively and 1820 lncRNAs in Sarakhs, a salt sensitive cultivar, after 6 h salt treatment. Functional analysis of these lncRNAs by several hybrid methods, revealed that salt responsive NAT-related lncRNAs associated with transcription factors, CERK1, LEA, Laccase genes and several genes involved in the hormone signaling pathways. Moreover, gene ontology (GO) enrichment analysis of salt responsive target genes related to top five selected lncRNAs showed their involvement in the regulation of ATPase, cation transporter, kinase and UDP-glycosyltransferases genes. Quantitative real-time PCR (qRT-PCR) experiment results of lncRNAs, pre-miRNAs and mature miRNAs were in accordance with our RNA-seq analysis. In the present study, a comparative analysis of differentially expressed lncRNAs and microRNA precursors between salt tolerant and sensitive pistachio cultivars provides valuable knowledge on gene expression regulation under salt stress condition.
Quantum renewal processes
Authors: Vacchini Bassano
Published: March 2020

We introduce a general construction of master equations with memory kernel whose solutions are given by completely positive trace-preserving maps. These dynamics going beyond the Lindblad paradigm are obtained with reference to classical renewal processes, so that they are termed quantum renewal processes. They can be described by means of semigroup dynamics interrupted by jumps, separated by independently distributed time intervals, following suitable waiting time distributions. In this framework, one can further introduce modified processes, in which the first few events follow different distributions. A crucial role, marking an important difference with respect to the classical case, is played by operator ordering. Indeed, for the same choice of basic quantum transformations, different quantum dynamics arise. In particular, for the case of modified processes, it is natural to consider the time inverted operator ordering, in which the last few events are distributed differently.
A retrospective qualitative report of symptoms and safety from transcranial focused ultrasound for neuromodulation in humans
Authors: Legon Wynn , Adams Sarah , Bansal Priya , Patel Parantap D. , Hobbs Landon , Ai Leo , Mueller Jerel K. , Meekins Gregg , Gillick Bernadette T.
Published: March 2020

Low intensity transcranial focused ultrasound (LIFU) is a promising method of non-invasive neuromodulation that uses mechanical energy to affect neuronal excitability. LIFU confers high spatial resolution and adjustable focal lengths for precise neuromodulation of discrete regions in the human brain. Before the full potential of low intensity ultrasound for research and clinical application can be investigated, data on the safety of this technique is indicated. Here, we provide an evaluation of the safety of LIFU for human neuromodulation through participant report and neurological assessment with a comparison of symptomology to other forms of non-invasive brain stimulation. Participants (N = 120) that were enrolled in one of seven human ultrasound neuromodulation studies in one laboratory at the University of Minnesota (2015–2017) were queried to complete a follow-up Participant Report of Symptoms questionnaire assessing their self-reported experience and tolerance to participation in LIFU research (Isppa 11.56–17.12 W/cm2) and the perceived relation of symptoms to LIFU. A total of 64/120 participant (53%) responded to follow-up requests to complete the Participant Report of Symptoms questionnaire. None of the participants experienced serious adverse effects. From the post-hoc assessment of safety using the questionnaire, 7/64 reported mild to moderate symptoms, that were perceived as ‘possibly’ or ‘probably’ related to participation in LIFU experiments. These reports included neck pain, problems with attention, muscle twitches and anxiety. The most common unrelated symptoms included sleepiness and neck pain. There were initial transient reports of mild neck pain, scalp tingling and headache that were extinguished upon follow-up. No new symptoms were reported upon follow up out to 1 month. The profile and incidence of symptoms looks to be similar to other forms of non-invasive brain stimulation.
Swarm Hunting and Cluster Ejections in Chemically Communicating Active Mixtures
Authors: Grauer Jens , Löwen Hartmut , Be’er Avraham , Liebchen Benno
Published: March 2020

A large variety of microorganisms produce molecules to communicate via complex signaling mechanisms such as quorum sensing and chemotaxis. The biological diversity is enormous, but synthetic inanimate colloidal microswimmers mimic microbiological communication (synthetic chemotaxis) and may be used to explore collective behaviour beyond the one-species limit in simpler setups. In this work we combine particle based and continuum simulations as well as linear stability analyses, and study a physical minimal model of two chemotactic species. We observed a rich phase diagram comprising a “hunting swarm phase”, where both species self-segregate and form swarms, pursuing, or hunting each other, and a “core-shell-cluster phase”, where one species forms a dense cluster, which is surrounded by a (fluctuating) corona of particles from the other species. Once formed, these clusters can dynamically eject their core such that the clusters almost turn inside out. These results exemplify a physical route to collective behaviours in microorganisms and active colloids, which are so-far known to occur only for comparatively large and complex animals like insects or crustaceans.
Choroidal thickness estimation from colour fundus photographs by adaptive binarisation and deep learning, according to central serous chorioretinopathy status
Authors: Komuku Yuki , Ide Atsuya , Fukuyama Hisashi , Masumoto Hiroki , Tabuchi Hitoshi , Okadome Takeshi , Gomi Fumi
Published: March 2020

This study was performed to estimate choroidal thickness by fundus photography, based on image processing and deep learning. Colour fundus photography and central choroidal thickness examinations were performed in 200 normal eyes and 200 eyes with central serous chorioretinopathy (CSC). Choroidal thickness under the fovea was measured using optical coherence tomography images. The adaptive binarisation method was used to delineate choroidal vessels within colour fundus photographs. Correlation coefficients were calculated between the choroidal vascular density (defined as the choroidal vasculature appearance index of the binarisation image) and choroidal thickness. The correlations between choroidal vasculature appearance index and choroidal thickness were −0.60 for normal eyes (p < 0.01) and −0.46 for eyes with CSC (p < 0.01). A deep convolutional neural network model was independently created and trained with augmented training data by K-Fold Cross Validation (K = 5). The correlation coefficients between the value predicted from the colour image and the true choroidal thickness were 0.68 for normal eyes (p < 0.01) and 0.48 for eyes with CSC (p < 0.01). Thus, choroidal thickness could be estimated from colour fundus photographs in both normal eyes and eyes with CSC, using imaging analysis and deep learning.
Disruption in murine Eml1 perturbs retinal lamination during early development
Authors: Collin G. B. , Won J. , Krebs M. P. , Hicks W. J. , Charette J. R. , Naggert J. K. , Nishina P. M.
Published: March 2020

During mammalian development, establishing functional neural networks in stratified tissues of the mammalian central nervous system depends upon the proper migration and positioning of neurons, a process known as lamination. In particular, the pseudostratified neuroepithelia of the retina and cerebrocortical ventricular zones provide a platform for progenitor cell proliferation and migration. Lamination defects in these tissues lead to mispositioned neurons, disrupted neuronal connections, and abnormal function. The molecular mechanisms necessary for proper lamination in these tissues are incompletely understood. Here, we identified a nonsense mutation in the Eml1 gene in a novel murine model, tvrm360, displaying subcortical heterotopia, hydrocephalus and disorganization of retinal architecture. In the retina, Eml1 disruption caused abnormal positioning of photoreceptor cell nuclei early in development. Upon maturation, these ectopic photoreceptors possessed cilia and formed synapses but failed to produce robust outer segments, implying a late defect in photoreceptor differentiation secondary to mislocalization. In addition, abnormal positioning of Müller cell bodies and bipolar cells was evident throughout the inner neuroblastic layer. Basal displacement of mitotic nuclei in the retinal neuroepithelium was observed in tvrm360 mice at postnatal day 0. The abnormal positioning of retinal progenitor cells at birth and ectopic presence of photoreceptors and secondary neurons upon maturation suggest that EML1 functions early in eye development and is crucial for proper retinal lamination during cellular proliferation and development.
Survival factor SvfA plays multiple roles in differentiation and is essential for completion of sexual development in Aspergillus nidulans
Authors: Lim Joo-Yeon , Kang Eun-Hye , Park Yun-Hee , Kook Jun-Ho , Park Hee-Moon
Published: March 2020

The first member of thevelvetfamily of proteins, VeA, regulates sexual development and secondary metabolism in the filamentous fungusAspergillus nidulans. In our study, through comparative proteome analysis using wild type andveA-deletion strains, new putative regulators of sexual development were identified and functionally analyzed. Among these, SvfA, containing a yeast survival factor 1 domain, plays multiple roles in the growth and differentiation ofA.nidulans. Deletion of thesvfAgene resulted in increased sensitivity to oxidative and cold stress as in yeast. ThesvfA-deletion strain showed an increase in bi-polar germination and a decrease in radial growth rate. The deletion strain formed structurally abnormal conidiophores and thus produced lower amounts of conidiospores during asexual development. ThesvfA-deletion strain produced few Hülle cells and small cleistothecia with no ascospores, indicating the requirement ofsvfAfor the completion of sexual development. Transcription and genetic analyses indicated that SvfA modulates the expression of key development regulatory genes. Western blot analysis revealed two forms of SvfA. The larger form showed sexual-specific and VeA-dependent production. Also, the deletion ofsvfAcaused decreased ST (sterigmatocystin) production. We propose that SvfA is a novel central regulator of growth, differentiation and secondary metabolism inA. nidulans.
Enhanced optical efficiency and color purity for organic light-emitting diodes by finely optimizing parameters of nanoscale low-refractive index grid
Authors: Kim Jae Geun , Hwang Yooji , Hwang Ha , Choi Jun Hee , Park Young Wook , Ju Byeong-Kwon
Published: March 2020

To extract the confined waveguided light in organic light-emitting diodes (OLEDs), inserting a low refractive index (RI) periodic structure between the anode and organic layer has been widely investigated as a promising technology. However, the periodic-structure-based light extraction applied inside devices has been shown to severely distort spectrum and affect EL characteristics. In this study, a simple light extraction technology using periodic low-RI nanodot array (NDA) as internal light extraction layer has been demonstrated. The NDA was fabricated simply via laser interference lithography (LIL). The structural parameters of periodic pattern, distance, and height were easily controlled by the LIL process. From computational analysis using finite-difference time-domain (FDTD) method, the NDA with 300 nm pitch and 0.3 coverage ratio per unit cell with 60 nm height showed the highest enhancement with spectral-distortion-minimized characteristics. Through both computational and experimental systematic analysis on the structural parameters of low-RI NDA-embedded OLEDs, highly efficient OLEDs have been fabricated. Finally, as representative indicators, hexagonal and rectangular positioned NDA-embedded OLEDs showed highly improved external quantum efficiencies of 2.44 (+29.55%) and 2.77 (+57.38%), respectively. Furthermore, the disadvantage originating from the nanoscale surface roughness on the transparent conductive oxide was minimized.
Nuclear Magnetic Resonance to Detect Rumen Metabolites Associated with Enteric Methane Emissions from Beef Cattle
Authors: Bica R. , Palarea-Albaladejo J. , Kew W. , Uhrin D. , Pacheco D. , Macrae A. , Dewhurst R. J.
Published: March 2020

This study presents the application of metabolomics to evaluate changes in the rumen metabolites of beef cattle fed with three different diet types: forage-rich, mixed and concentrate-rich. Rumen fluid samples were analysed by 1H-NMR spectroscopy and the resulting spectra were used to characterise and compare metabolomic profiles between diet types and assess the potential for NMR metabolite signals to be used as proxies of methane emissions (CH4 in g/kg DMI). The dataset available consisted of 128 measurements taken from 4 experiments with CH4 measurements taken in respiration chambers. Predictive modelling of CH4 was conducted by partial least squares (PLS) regression, fitting calibration models either using metabolite signals only as predictors or using metabolite signals as well as other diet and animal covariates (DMI, ME, weight, BW0.75, DMI/BW0.75). Cross-validated R2 were 0.57 and 0.70 for the two models respectively. The cattle offered the concentrate-rich diet showed increases in alanine, valerate, propionate, glucose, tyrosine, proline and isoleucine. Lower methane yield was associated with the concentrate-rich diet (p < 0.001). The results provided new insight into the relationship between rumen metabolites, CH4 production and diets, as well as showing that metabolites alone have an acceptable association with the variation in CH4 production from beef cattle.
Carbon Capture and Utilization by mineralization of cement pastes derived from recycled concrete
Authors: Skocek Jan , Zajac Maciej , Ben Haha Mohsen
Published: March 2020

Reduction of CO2 emissions associated with cement production is challenging in view of the increasing cement demand and the fact that major part of the emissions originates from the main raw material used - limestone - which can be only to extremely low amount substituted. A Carbon Capture and Utilization (CCU) approach based on mineralization of fines derived from concrete appears to be a viable alternative to reduce these emissions. The CO2 sequestration and the reactivity of the obtained carbonated recycled fines is experimentally demonstrated for lab as well as industrial materials for different mineralization conditions. It is shown that all CO2 originally released by limestone calcination during clinker production can be sequestered by the full carbonation of the fines within a short time. Upon full carbonation, gels with pozzolanic properties form in the fines irrespective of the conditions tested. The carbonated fines have specific CO2 savings more than 30% higher than the simple clinker replacement by limestone.
N-Phenethyl Substitution in 14-Methoxy-N-methylmorphinan-6-ones Turns Selective µ Opioid Receptor Ligands into Dual µ/δ Opioid Receptor Agonists
Authors: Dumitrascuta Maria , Bermudez Marcel , Ben Haddou Tanila , Guerrieri Elena , Schläfer Lea , Ritsch Andreas , Hosztafi Sandor , Lantero Aquilino , Kreutz Christoph , Massotte Dominique , Schmidhammer Helmut , Wolber Gerhard , Spetea Mariana
Published: March 2020

Morphine and structurally-derived compounds are µ opioid receptor (µOR) agonists, and the most effective analgesic drugs. However, their usefulness is limited by serious side effects, including dependence and abuse potential. The N-substituent in morphinans plays an important role in opioid activities in vitro and in vivo. This study presents the synthesis and pharmacological evaluation of new N-phenethyl substituted 14-O-methylmorphinan-6-ones. Whereas substitution of the N-methyl substituent in morphine (1) and oxymorphone (2) by an N-phenethyl group enhances binding affinity, selectivity and agonist potency at the µOR of 1a and 2a, the N-phenethyl substitution in 14-methoxy-N-methylmorphinan-6-ones (3 and 4) converts selective µOR ligands into dual µ/δOR agonists (3a and 4a). Contrary to N-methylmorphinans 1–4, the N-phenethyl substituted morphinans 1a–4a produce effective and potent antinociception without motor impairment in mice. Using docking and molecular dynamics simulations with the µOR, we establish that N-methylmorphinans 1–4 and their N-phenethyl counterparts 1a–4a share several essential receptor-ligand interactions, but also interaction pattern differences related to specific structural features, thus providing a structural basis for their pharmacological profiles. The emerged structure-activity relationships in this class of morphinans provide important information for tuning in vitro and in vivo opioid activities towards discovery of effective and safer analgesics.
Exploring the role of host specialisation and oxidative stress in interspecific lifespan variation in subtropical tephritid flies
Authors: Malod Kévin , Archer C. Ruth , Karsten Minette , Cruywagen Ruben , Howard Alexandra , Nicolson Susan W. , Weldon Christopher W.
Published: March 2020

In herbivorous insects, the degree of host specialisation may be one ecological factor that shapes lifespan. Because host specialists can only exploit a limited number of plants, their lifecycle should be synchronised with host phenology to allow reproduction when suitable hosts are available. For species not undergoing diapause or dormancy, one strategy to achieve this could be evolving long lifespans. From a physiological perspective, oxidative stress could explain how lifespan is related to degree of host specialisation. Oxidative stress caused by Reactive Oxygen Species (ROS) might help underpin ageing (the Free Radical Theory of Aging (FRTA)) and mediate differences in lifespan. Here, we investigated how lifespan is shaped by the degree of host specialisation, phylogeny, oxidative damage accumulation and antioxidant protection in eight species of true fruit flies (Diptera: Tephritidae). We found that lifespan was not constrained by species relatedness or oxidative damage (arguing against the FRTA); nevertheless, average lifespan was positively associated with antioxidant protection. There was no lifespan difference between generalist and specialist species, but most of the tephritids studied had long lifespans in comparison with other dipterans. Long lifespan may be a trait under selection in fruit-feeding insects that do not use diapause.
Influence of the reactor environment on the selective area thermal etching of GaN nanohole arrays
Authors: Coulon Pierre-Marie , Feng Peng , Damilano Benjamin , Vézian Stéphane , Wang Tao , Shields Philip A.
Published: March 2020

Selective area thermal etching (SATE) of gallium nitride is a simple subtractive process for creating novel device architectures and improving the structural and optical quality of III-nitride-based devices. In contrast to plasma etching, it allows, for example, the creation of enclosed features with extremely high aspect ratios without introducing ion-related etch damage. We report how SATE can create uniform and organized GaN nanohole arrays from c-plane and (11–22) semi-polar GaN in a conventional MOVPE reactor. The morphology, etching anisotropy and etch depth of the nanoholes were investigated by scanning electron microscopy for a broad range of etching parameters, including the temperature, the pressure, the NH3 flow rate and the carrier gas mixture. The supply of NH3 during SATE plays a crucial role in obtaining a highly anisotropic thermal etching process with the formation of hexagonal non-polar-faceted nanoholes. Changing other parameters affects the formation, or not, of non-polar sidewalls, the uniformity of the nanohole diameter, and the etch rate, which reaches 6 µm per hour. Finally, the paper discusses the SATE mechanism within a MOVPE environment, which can be applied to other mask configurations, such as dots, rings or lines, along with other crystallographic orientations.
Association among chronic kidney disease, airflow limitation, and mortality in a community-based population: The Yamagata (Takahata) study
Authors: Suzuki Natsuko , Matsuki Eri , Araumi Akira , Ashitomi Sakiko , Watanabe Sayumi , Kudo Kosuke , Ichikawa Kazunobu , Inoue Sumito , Watanabe Masafumi , Ueno Yoshiyuki , Ishizawa Kenichi , Kayama Takamasa , Konta Tsuneo
Published: March 2020

Chronic kidney disease (CKD) and chronic obstructive pulmonary disease (COPD) are known risk factors for mortality. In this study, we examined the overlap of CKD and airflow limitation (AFL) that characterises COPD and its effect on 10-year mortality in a community-based population. This study included 1,233 health check-up participants (mean age, 63.7 years; 46.7% men). We defined serum creatinine-based CKD (CKDcr) and serum cystatin C-based CKD (CKDcys) as glomerular filtration rate <60 mL/min/1.73 m2, estimated using serum creatinine or cystatin C, and/or dipstick proteinuria ≥1+. AFL was defined as forced expiratory volume in 1 s to forced vital capacity ratio <70% on spirometry. Compared with subjects without AFL, those with AFL showed a significantly higher prevalence of CKDcys but not of CKDcr. Cox proportional hazard analysis adjusted for confounders showed that the hazard ratio (95% confidence interval) for all-cause mortality was 1.45 (0.77–2.63) in subjects with CKDcys alone, 1.29 (0.60–2.54) in those with AFL alone, and 2.94 (1.33–6.12) in those with both CKDcys and AFL, with subjects without both AFL and CKD as the reference. This study showed that AFL and CKDcys are strongly associated and that their overlap is a significant risk factor for mortality in community-based populations.
Architectural evolution in cocoons spun by Hyalophora (Lepidoptera; Saturniidae) silk moth species
Authors: Guerra Patrick A. , Lawson Lucinda P. , Gatto Lea J. , Albright Molly E. , Smith Scott J.
Published: March 2020

Caterpillars of the silk moth genus Hyalophora (Lepidoptera; Saturniidae) construct multilayered cocoons that function as overwintering housing during the pupal to adult developmental period. While all cocoons share the primary function of protecting the developing moth, cocoons spun by different Hyalophora silk moth species vary significantly in architectural features and in the level of intraspecific cocoon-type polymorphism. We compared the cocoons of Hyalophora species found throughout North America and investigated the evolution of architectural variation. We first characterized and compared the architectural features of cocoons at all three cocoon sections (outer envelope, inner envelope, and the intermediate section that separates them), and found that variation in the outer envelope underlies the differences in architecture between cocoons. Phylogenetic analysis indicates ancestral polymorphic architecture (both “baggy” and “compact” morphs), with diversification within Hyalophora for both monomorphic “compact” cocoons, and increased intermediate space and silk in “baggy” lineages. The evolution of these traits suggests a potential functional role for the different cocoon architectural forms.
Structural basis for substrate and product recognition in human phosphoglucomutase-1 (PGM1) isoform 2, a member of the α-d-phosphohexomutase superfamily
Authors: Backe Paul Hoff , Laerdahl Jon K. , Kittelsen Lene Svendsen , Dalhus Bjørn , Mørkrid Lars , Bjørås Magnar
Published: March 2020

Human phosphoglucomutase 1 (PGM1) is an evolutionary conserved enzyme that belongs to the ubiquitous and ancient α-d-phosphohexomutases, a large enzyme superfamily with members in all three domains of life. PGM1 catalyzes the bi-directional interconversion between α-d-glucose 1-phosphate (G1P) and α-d-glucose 6-phosphate (G6P), a reaction that is essential for normal carbohydrate metabolism and also important in the cytoplasmic biosynthesis of nucleotide sugars needed for glycan biosynthesis. Clinical studies have shown that mutations in the PGM1 gene may cause PGM1 deficiency, an inborn error of metabolism previously classified as a glycogen storage disease, and PGM1 deficiency was recently also shown to be a congenital disorder of glycosylation. Here we present three crystal structures of the isoform 2 variant of PGM1, both as a free enzyme and in complex with its substrate and product. The structures show the longer N-terminal of this PGM1 variant, and the ligand complex structures reveal for the first time the detailed structural basis for both G1P substrate and G6P product recognition by human PGM1. We also show that PGM1 and the paralogous gene PGM5 are the results of a gene duplication event in a common ancestor of jawed vertebrates, and, importantly, that both PGM1 isoforms are conserved and of functional significance in all vertebrates. Our finding that PGM1 encodes two equally conserved and functionally important isoforms in the human organism should be taken into account in the evaluation of disease-related missense mutations in patients in the future.
Inner histopathologic changes and disproportionate zone volumes in foetal growth plates following gestational hypoglycaemia in rats
Authors: Jensen Vivi F. H. , Mølck Anne-Marie , Bøgh Ingrid B. , Nowak Jette , Viuff Birgitte M. , Rasmussen Charlotte L. M. , Pedersen Louise , Fels Johannes J. , Madsen Suzi H. , McGuigan Fiona E. , Tveden-Nyborg Pernille , Lykkesfeldt Jens , Akesson Kristina E.
Published: March 2020

Maternal hypoglycaemia throughout gestation until gestation day (GD)20 delays foetal growth and skeletal development. While partially prevented by return to normoglycaemia after completed organogenesis (GD17), underlying mechanisms are not fully understood. Here, we investigated the pathogenesis of these changes and significance of maternal hypoglycaemia extending beyond organogenesis in non-diabetic rats. Pregnant rats received insulin-infusion until GD20 or GD17, with sacrifice on GD20. Hypoglycaemia throughout gestation increased maternal corticosterone levels, which correlated with foetal levels. Growth plates displayed central histopathologic changes comprising disrupted cellular organisation, hypertrophic chondrocytes, and decreased cellular density; expression of pro-angiogenic factors, HIF-1α and VEGF-A increased in surrounding areas. Disproportionately decreased growth plate zone volumes and lower expression of the structural protein MATN-3 were seen, while bone ossification parameters were normal. Ending maternal/foetal hypoglycaemia on GD17 reduced incidence and severity of histopathologic changes and with normal growth plate volume. Compromised foetal skeletal development following maternal hypoglycaemia throughout gestation is hypothesised to result from corticosterone-induced hypoxia in growth plates, where hypoxia disrupts chondrocyte maturation and growth plate structure and volume, decreasing long bone growth. Maternal/foetal hypoglycaemia lasting only until GD17 attenuated these changes, suggesting a pivotal role of glucose in growth plate development.
Primary productivity connects hilsa fishery in the Bay of Bengal
Authors: Hossain M. Shahadat , Sarker Subrata , Sharifuzzaman S. M. , Chowdhury Sayedur Rahman
Published: March 2020

Tropical hilsa shad (Tenualosa ilisha) contributes significantly to the society and economy of Bangladesh, India and Myanmar, but little is known about their habitats across the life cycle and their relationship with environmental drivers. This study describes spatial and temporal variability of productivity in the Bay of Bengal (BoB) relating to hilsa fishery. Decadal data on net primary productivity, nutrients (i.e. nitrate, phosphate and silicate) and zooplankton were collected from Aqua MODIS, world ocean database and COPEPOD respectively with spatial resolution 1°×1°. Moreover, monthly abundance of phytoplankton, hilsa catch and long-term catch dynamics were analyzed to determine the associations between variables. The present study was extended over 3.568 million km2 area, of which 0.131–0.213 million km2 area characterized as the most productive with net primary production of >2,000 mg C/m2/day, 0.373–0.861 million km2 area as moderately productive with 500–2,000 mg C/m2/day, and 2.517–3.040 million km2 area as the least productive with <500 mg C/m2/day which were consistent with field verification data. In case of nutrients, the Ganges-Brahmaputra-Meghna (GBM) delta was rich in nitrate and phosphate than that of the Ayeyarwady delta, while silicate concentration persisted high all over the northern BoB including the deltas. A peak abundance of phytoplankton was observed in GBM delta during the months of August-November, when ~80% of total hilsa are harvested in Bangladesh annually. Variations in seasonal productivity linked with nutrients and phytoplankton abundance are important factors for predicting hilsa habitat and their migration patterns in the deltaic regions and shelf waters of BoB. These results can be useful in forecasting potential responses of the hilsa in BoB ecosystem to changing global ocean productivity.
Genome-wide analyses disclose the distinctive HLA architecture and the pharmacogenetic landscape of the Somali population
Authors: Ali Abshir A. , Aalto Mikko , Jonasson Jon , Osman Abdimajid
Published: March 2020

African populations are underrepresented in medical genomics studies. For the Somali population, there is virtually no information on genomic markers with significance to precision medicine. Here, we analyzed nearly 900,000 genomic markers in samples collected from 95 unrelated individuals in the North Eastern Somalia. ADMIXTURE program for estimation of individual ancestries revealed a homogenous Somali population. Principal component analysis with PLINK software showed approximately 60% East African and 40% West Eurasian genes in the Somali population, with a close relation to the Cushitic and Semitic speaking Ethiopian populations. We report the unique features of human leukocyte antigens (HLA) in the Somali population, which seem to differentiate from all other neighboring regions compared. Current study identified high prevalence of the diabetes type 1 (T1D) predisposing HLA DR-DQ haplotypes in Somalia. This finding may explain the increased T1D risk observed among Somali children. In addition, ethnic Somalis were found to host the highest frequencies observed thus far for several pharmacogenetic variants, including UGT1A4*2. In conclusion, we report that the Somali population displays genetic traits of significance to health and disease. The Somali dataset is publicly available and will add more information to the few genomic datasets available for African populations.
Out-of-clinic measurement of sweat chloride using a wearable sensor during low-intensity exercise
Authors: Choi Dong-Hoon , Kitchen Grant B. , Jennings Mark T. , Cutting Garry R. , Searson Peter C.
Published: March 2020

Wearable sensors have the potential to enable measurement of sweat chloride outside the clinic. Here we assess the feasibility of mild exercise as an alternative to pilocarpine iontophoresis for sweat generation. The results from this proof-of-concept study suggest that mild exercise could be a feasible approach to obtain reliable measurements of sweat chloride concentration within 20–30 min using a wearable sensor.
Modified cation-exchange membrane for phosphate recovery in an electrochemically assisted adsorption–desorption process
Authors: Petrov Kostadin V. , Paltrinieri Laura , Poltorak Lukasz , de Smet Louis C. P. M. , Sudhölter Ernst J. R.
Published: March 2020

A novel ion separation methodology using a cation-exchange membrane modified with iron oxide nanoparticles (Fe3O4 NPs) coated with polyhexamethylene guanidine (PHMG) is proposed.
Evaluating lignin valorization via pyrolysis and vapor-phase hydrodeoxygenation for production of aromatics and alkenes
Authors: Saraeian Alireza , Aui Alvina , Gao Yu , Wright Mark M. , Foston Marcus , Shanks Brent H.
Published: March 2020

Lignin valorization to chemicals is an important component of creating economically viable biofuels production from lignocellulosic biomass.
Distribution of aluminium in hydrated leaves of tea (Camellia sinensis) using synchrotron- and laboratory-based X-ray fluorescence microscopy
Authors: van der Ent Antony , Kopittke Peter M , Paterson David J , Casey Lachlan W , Nkrumah Philip Nti
Published: March 2020

Aluminium (Al) is highly toxic to plant growth, with soluble concentrations being elevated in the ∼40% of arable soils worldwide that are acidic. Determining the distribution of Al in plant tissues is important for understanding the mechanisms by which it is toxic and how some plants tolerate high concentrations. Synchrotron- and laboratory-based X-ray fluorescence microscopy (XFM) is a powerful technique to quantitatively analyse the distribution of elements, including in hydrated and living plants. However, analysis of light elements (z < phosphorus) is extremely challenging due to signal losses in air, and the unsuitability of vacuum environments for (fresh) hydrated plant tissues. This study uses XFM in a helium environment to avoid Al signal loss to reveal the distribution of Al in hydrated plant tissues of Tea (Camellia sinensis). The results show that Al occurs in localised areas across the foliar surface, whereas in cross-sections Al is almost exclusively concentrated in the apoplastic space above and in between adaxial epidermal cells. This distribution of Al is related to the Al tolerance of this species, and accumulation of phytotoxic elements in the apoplastic space, away from sensitive processes such as photosynthesis in the palisade mesophyll cells, is a common tolerance mechanism reported in many different plant species. This study develops an XFM method on both synchrotron and laboratory sources that overcomes the drawbacks of existing analytical techniques, permitting measurement of light elements down to Al in (fresh) hydrated plant tissues.