bluuebunny/crossref_metadata_2025 huggingface dataset:
Figure S1 from Chemotherapy-Induced Extracellular Vesicle miRNAs Promote Breast Cancer Stemness by Targeting ONECUT2
Authors: Shen Meng , Dong Chuan , Ruan Xianhui , Yan Wei , Cao Minghui , Pizzo Donald , Wu Xiwei , Yang Lin , Liu Liang , Ren Xiubao , Wang Shizhen Emily
Published: March 2023

Figure S1 showing characterization of EVs and EV uptake by recipient cells
Supplementary Figure S1 from Local Delivery of Ox40l, Cd80, and Cd86 mRNA Kindles Global Anticancer Immunity
Authors: Haabeth Ole Audun Werner , Blake Timothy R. , McKinlay Colin J. , Tveita Anders A. , Sallets Adrienne , Waymouth Robert M. , Wender Paul A. , Levy Ronald
Published: March 2023

OX40L, CD80 and CD86 mRNA-CART treatment increased the expression of CD80, CD86 and OX40L protein on tumor infiltrating cells
Supplementary Data from YES1 Is a Targetable Oncogene in Cancers Harboring YES1 Gene Amplification
Authors: Hamanaka Natsuki , Nakanishi Yoshito , Mizuno Takakazu , Horiguchi-Takei Kana , Akiyama Nukinori , Tanimura Hiromi , Hasegawa Masami , Satoh Yasuko , Tachibana Yukako , Fujii Toshihiko , Sakata Kiyoaki , Ogasawara Kiyomoto , Ebiike Hirosato , Koyano Hiroshi , Sato Haruhiko , Ishii Nobuya , Mio Toshiyuki
Published: March 2023

Supplementary materials and methods
Supplementary Tables from The Open Chromatin Landscape of Non–Small Cell Lung Carcinoma
Authors: Wang Zhoufeng , Tu Kailing , Xia Lin , Luo Kai , Luo Wenxin , Tang Jie , Lu Keying , Hu Xinlei , He Yijing , Qiao Wenliang , Zhou Yongzhao , Zhang Jun , Cao Feng , Dai Shuiping , Tian Panwen , Wang Ye , Liu Lunxu , Che Guowei , Zhou Qinghua , Xie Dan , Li Weimin
Published: March 2023

SF1:Table S1. The Clinical information and pathologic characteristics of 47 NSCLC patients and 4 non-malignant nodules patients; SF2:Table S2. Information of DNA-seq, RNA-seq, ATAC-seq and single-cell ATAC-seq; SF3:Table S3. Significant amplication and deletion regions of LUAD and LUSC samples (Genes marked in red were known cancer genes); SF4:Table S4. GREAT enrichment of common open regions; SF5:Table S5. Expression change of cluster II specific open peak related genes. SF6:Table S6. Sample Information and classification; SF7:Table S7. Sub cluster 2 specific region GREAT enrichment; SF8:Table S8. broad open chromatin region related genes; SF9:Table S9. sCOP and their accosiated DEGs; SF10:Table S10. Known important NSCLC related genes were affected by sCOP; SF11:Table S11. Joint-QTLs and Genes; SF12:Table S12. Haplotype blocks harboring both joint-QTL and GWAS lead SNP of lung cancer;
Table S3 from Identification of Coding and Long Noncoding RNAs Differentially Expressed in Tumors and Preferentially Expressed in Healthy Tissues
Authors: Unfried Juan P. , Serrano Guillermo , Suárez Beatriz , Sangro Paloma , Ferretti Valeria , Prior Celia , Boix Loreto , Bruix Jordi , Sangro Bruno , Segura Víctor , Fortes Puri
Published: March 2023

Coding and lncRNAs specifically or preferentially expressed in different tissues or tumors. Donor tissues. Values (in percentage) used to build the pie chart of Fig. 4B. IPA. Ingenuity analysis of cancer categories enriched for mRNAs donated by the indicated tissues. p values are indicated. Only tumors with a p value higher than 1.0E-03 are indicated. GO. Gene ontology analysis of the functions enriched for mRNAs donated by the indicated tissues. FDR values are indicated.
Supplementary Data from Constant Degradation of the Androgen Receptor by MDM2 Conserves Prostate Cancer Stem Cell Integrity
Authors: Vummidi Giridhar Premkumar , Williams Karin , VonHandorf Andrew P. , Deford Paul L. , Kasper Susan
Published: March 2023

The file contains 6 supplementary figures. Figure S1 shows that AR protein expression is also induced following treatment with additional proteasomal inhibitors, MG115 and Epoxomicine. Figure S2 compares the levels of MDM2 expression, demonstrating that CSC-like HuSLC and HPET cells express higher levels of MDM2 as compared to standard PCa cell lines. Figure S3 demonstrates that HPET and HuSLCs only express AR-fl mRNA but not AR-V mRNA and this is confirmed in Figure S4 where HPET and HuSLCs only express AR-fl protein but not AR-V protein. Figure S5 provides information that induction of AR promotes expression of additional AR target genes, namely AR-regulated HES1 and HEY1 genes. Figure S6 compares p53 expression in CSC-like HPET and HuSLCs to that of LNCaP cells.
Supplementary Table 1-5 from Tumor-Derived Thymic Stromal Lymphopoietin Expands Bone Marrow B-cell Precursors in Circulation to Support Metastasis
Authors: Ragonnaud Emeline , Moritoh Kanako , Bodogai Monica , Gusev Fedor , Garaud Soizic , Chen Chen , Wang Xin , Baljinnyam Tuvshintugs , Becker Kevin G. , Maul Robert W. , Willard-Gallo Karen , Rogaev Evgeny , Biragyn Arya
Published: March 2023

Tables 1-5
Figure S2 from Identification of Coding and Long Noncoding RNAs Differentially Expressed in Tumors and Preferentially Expressed in Healthy Tissues
Authors: Unfried Juan P. , Serrano Guillermo , Suárez Beatriz , Sangro Paloma , Ferretti Valeria , Prior Celia , Boix Loreto , Bruix Jordi , Sangro Bruno , Segura Víctor , Fortes Puri
Published: March 2023

A. Representation of SOM results. Number of elements per cluster (top) and profiles observed for each cluster and the results of the hierarchical clustering of the centroids (shown in similar colors) (bottom). The study was performed with TCGA and GTEx data. Coding (COD) and long non-coding (LNC) genes were evaluated. B. Examples of clusters identified after analysis of GTEx RNA-Seq data. Clusters of coding and non-coding genes with similar expression profiles were identified by analysis of GTEx RNA-Seq data using neural networks. The box plot showing the expression in all samples and tissues examined of an artificial reference gene is shown. Cluster 218 represents 48 genes preferentially expressed in brain. The discontinuous red line marks the position of the lower quartile of expression in the highest-expressing tissue.
Supplementary Tables from CDK4 Regulates Lysosomal Function and mTORC1 Activation to Promote Cancer Cell Survival
Authors: Martínez-Carreres Laia , Puyal Julien , Leal-Esteban Lucía C. , Orpinell Meritxell , Castillo-Armengol Judit , Giralt Albert , Dergai Oleksandr , Moret Catherine , Barquissau Valentin , Nasrallah Anita , Pabois Angélique , Zhang Lianjun , Romero Pedro , Lopez-Mejia Isabel C. , Fajas Lluis
Published: March 2023

Supplementary Tables. Supplementary Table 1. Target sequences for guide RNA used to create KO stable cell lines with CRISP/Cas9 technology, Supplementary Table 2. Primers used for qPCR Analysis of Transcription Factor EB (TFEB) regulated genes (human), Supplementary Table 3. Primers used for qPCR Analysis of Senescence genes (human), Supplementary Table 4. Primers used for qPCR Analysis of housekeeping genes (human), Supplementary Table 5. Primers used for FLCN mutagenesis
Supplementary Data from Meflin-Positive Cancer-Associated Fibroblasts Inhibit Pancreatic Carcinogenesis
Authors: Mizutani Yasuyuki , Kobayashi Hiroki , Iida Tadashi , Asai Naoya , Masamune Atsushi , Hara Akitoshi , Esaki Nobutoshi , Ushida Kaori , Mii Shinji , Shiraki Yukihiro , Ando Kenju , Weng Liang , Ishihara Seiichiro , Ponik Suzanne M. , Conklin Matthew W. , Haga Hisashi , Nagasaka Arata , Miyata Takaki , Matsuyama Makoto , Kobayashi Tomoe , Fujii Tsutomu , Yamada Suguru , Yamaguchi Junpei , Wang Tongtong , Woods Susan L. , Worthley Daniel , Shimamura Teppei , Fujishiro Mitsuhiro , Hirooka Yoshiki , Enomoto Atsushi , Takahashi Masahide
Published: March 2023

Supplementary data contains additional methods and figures. The figures contain the following information: Supplementary Figure 1 extends Figure 1 providing evidence that Meflin is expressed in BM MSCs and PSCs in mice. Supplementary Figure 2 supports Figure 1 showing the development of the Meflin-ZDC mice. Supplementary Figure 3-5 extend Figure 1 providing additional evidence that Meflin is specifically expressed in PSCs and CAFs and its expression is regulated by calcipotriol. Supplementary Figure 6-9 support Figure 2 showing the detection of Meflin expression at the protein and mRNA levels in human and mouse PDAC. Supplementary Figure 10 and 11 support Figure 2 showing the data of single-cell RNA sequencing of CAFs isolated from PDAC and breast cancer mouse models. Supplementary Figure 12 supports Figure 3 showing the effects of Meflin depletion on the global gene expression profiles in mouse MSCs. Supplementary Figure 13 supports Figure 3 showing the analysis of tumors developed in WT and Meflin-KO KPC mice. Supplementary Figure 14 supports Figure 6 showing the development of the Meflin-CreERT2 mice. Supplementary Figure 15 and 16 support Figure 7 showing the effect of exogenous Meflin expression on MSC gene expression and the growth of xenograft tumors. Supplementary Figure 17 support Figure 7 showing the role of Meflin in collagen remodeling in mouse and human PDAC. Supplementary Table 1 and 2 show the description of the cohort of PDAC patients included in the analysis and univariate and multivariate Cox regression analysis of human PDAC cases.
Supplementary Figure 5 from ICOS Is an Indicator of T-cell–Mediated Response to Cancer Immunotherapy
Authors: Xiao Zunyu , Mayer Aaron T. , Nobashi Tomomi W. , Gambhir Sanjiv S.
Published: March 2023

Figure S5: Quantification of the relative proportion of Foxp3+ compared to Foxp3- CD4 T cells in the lymph node of mice treated with anti PD-1 antibody. (****: P<0.0001, the data was presented as mean {plus minus} SD, n=5)
Supplementary Video 2 from Pattern of Invasion in Human Pancreatic Cancer Organoids Is Associated with Loss of SMAD4 and Clinical Outcome
Authors: Huang Wenjie , Navarro-Serer Bernat , Jeong Yea Ji , Chianchiano Peter , Xia Limin , Luchini Claudio , Veronese Nicola , Dowiak Cameron , Ng Tammy , Trujillo Maria A. , Huang Bo , Pflüger Michael J. , Macgregor-Das Anne M. , Lionheart Gemma , Jones Danielle , Fujikura Kohei , Nguyen-Ngoc Kim-Vy , Neumann Neil M. , Groot Vincent P. , Hasanain Alina , van Oosten A. Floortje , Fischer Sandra E. , Gallinger Steven , Singhi Aatur D. , Zureikat Amer H. , Brand Randall E. , Gaida Matthias M. , Heinrich Stefan , Burkhart Richard A. , He Jin , Wolfgang Christopher L. , Goggins Michael G. , Thompson Elizabeth D. , Roberts Nicholas J. , Ewald Andrew J. , Wood Laura D.
Published: March 2023

Supplementary Video 2. Mesenchymal invasion in PDAC organoid cultured in collagen I (focal invasion).
Table S3 from SIRT1-Mediated Expression of CD24 and Epigenetic Suppression of Novel Tumor Suppressor miR-1185-1 Increases Colorectal Cancer Stemness
Authors: Wang Teh-Wei , Chern Edward , Hsu Chao-Wei , Tseng Kuo-Chang , Chao Hsiao-Mei
Published: March 2023

Pathway mapping by KEGG
FigureS3 from SIRT1-Mediated Expression of CD24 and Epigenetic Suppression of Novel Tumor Suppressor miR-1185-1 Increases Colorectal Cancer Stemness
Authors: Wang Teh-Wei , Chern Edward , Hsu Chao-Wei , Tseng Kuo-Chang , Chao Hsiao-Mei
Published: March 2023

The expression level of miR-1185-1 target genes
Supplementary Figure 5 from Pattern of Invasion in Human Pancreatic Cancer Organoids Is Associated with Loss of SMAD4 and Clinical Outcome
Authors: Huang Wenjie , Navarro-Serer Bernat , Jeong Yea Ji , Chianchiano Peter , Xia Limin , Luchini Claudio , Veronese Nicola , Dowiak Cameron , Ng Tammy , Trujillo Maria A. , Huang Bo , Pflüger Michael J. , Macgregor-Das Anne M. , Lionheart Gemma , Jones Danielle , Fujikura Kohei , Nguyen-Ngoc Kim-Vy , Neumann Neil M. , Groot Vincent P. , Hasanain Alina , van Oosten A. Floortje , Fischer Sandra E. , Gallinger Steven , Singhi Aatur D. , Zureikat Amer H. , Brand Randall E. , Gaida Matthias M. , Heinrich Stefan , Burkhart Richard A. , He Jin , Wolfgang Christopher L. , Goggins Michael G. , Thompson Elizabeth D. , Roberts Nicholas J. , Ewald Andrew J. , Wood Laura D.
Published: March 2023

Association Between SMAD4 Status and Recurrence/Death
Supplementary Figure 4 from Pattern of Invasion in Human Pancreatic Cancer Organoids Is Associated with Loss of SMAD4 and Clinical Outcome
Authors: Huang Wenjie , Navarro-Serer Bernat , Jeong Yea Ji , Chianchiano Peter , Xia Limin , Luchini Claudio , Veronese Nicola , Dowiak Cameron , Ng Tammy , Trujillo Maria A. , Huang Bo , Pflüger Michael J. , Macgregor-Das Anne M. , Lionheart Gemma , Jones Danielle , Fujikura Kohei , Nguyen-Ngoc Kim-Vy , Neumann Neil M. , Groot Vincent P. , Hasanain Alina , van Oosten A. Floortje , Fischer Sandra E. , Gallinger Steven , Singhi Aatur D. , Zureikat Amer H. , Brand Randall E. , Gaida Matthias M. , Heinrich Stefan , Burkhart Richard A. , He Jin , Wolfgang Christopher L. , Goggins Michael G. , Thompson Elizabeth D. , Roberts Nicholas J. , Ewald Andrew J. , Wood Laura D.
Published: March 2023

Impact of Culture Matrix on PDAC Organoid Invasion
Supplementary Figure 3 from Pattern of Invasion in Human Pancreatic Cancer Organoids Is Associated with Loss of SMAD4 and Clinical Outcome
Authors: Huang Wenjie , Navarro-Serer Bernat , Jeong Yea Ji , Chianchiano Peter , Xia Limin , Luchini Claudio , Veronese Nicola , Dowiak Cameron , Ng Tammy , Trujillo Maria A. , Huang Bo , Pflüger Michael J. , Macgregor-Das Anne M. , Lionheart Gemma , Jones Danielle , Fujikura Kohei , Nguyen-Ngoc Kim-Vy , Neumann Neil M. , Groot Vincent P. , Hasanain Alina , van Oosten A. Floortje , Fischer Sandra E. , Gallinger Steven , Singhi Aatur D. , Zureikat Amer H. , Brand Randall E. , Gaida Matthias M. , Heinrich Stefan , Burkhart Richard A. , He Jin , Wolfgang Christopher L. , Goggins Michael G. , Thompson Elizabeth D. , Roberts Nicholas J. , Ewald Andrew J. , Wood Laura D.
Published: March 2023

CK and VIM Expression in Organoids with Mesenchymal and Collective Invasion
Supplementary Figure 1 from Pattern of Invasion in Human Pancreatic Cancer Organoids Is Associated with Loss of SMAD4 and Clinical Outcome
Authors: Huang Wenjie , Navarro-Serer Bernat , Jeong Yea Ji , Chianchiano Peter , Xia Limin , Luchini Claudio , Veronese Nicola , Dowiak Cameron , Ng Tammy , Trujillo Maria A. , Huang Bo , Pflüger Michael J. , Macgregor-Das Anne M. , Lionheart Gemma , Jones Danielle , Fujikura Kohei , Nguyen-Ngoc Kim-Vy , Neumann Neil M. , Groot Vincent P. , Hasanain Alina , van Oosten A. Floortje , Fischer Sandra E. , Gallinger Steven , Singhi Aatur D. , Zureikat Amer H. , Brand Randall E. , Gaida Matthias M. , Heinrich Stefan , Burkhart Richard A. , He Jin , Wolfgang Christopher L. , Goggins Michael G. , Thompson Elizabeth D. , Roberts Nicholas J. , Ewald Andrew J. , Wood Laura D.
Published: March 2023

SOX9 expression in PDAC organoids
Tables S1-S4 from Brain Tumor Stem Cell Dependence on Glutaminase Reveals a Metabolic Vulnerability through the Amino Acid Deprivation Response Pathway
Authors: Restall Ian J. , Cseh Orsolya , Richards Laura M. , Pugh Trevor J. , Luchman H. Artee , Weiss Samuel
Published: March 2023

Supplementary tables S1-S4. Supplementary Table S1. Primer sets for qPCR. Supplementary Table S2. Astrocyte gene signature gene list. Supplementary Table S3. OPC gene signature gene list. Supplementary Table S4. Early RGC gene signature gene list.
Supplementary Data from IL6 Fuels Durable Memory for Th17 Cell–Mediated Responses to Tumors
Authors: Knochelmann Hannah M. , Dwyer Connor J. , Smith Aubrey S. , Bowers Jacob S. , Wyatt Megan M. , Nelson Michelle H. , Rangel Rivera Guillermo O. , Horton Joshua D. , Krieg Carsten , Armeson Kent , Lesinski Gregory B. , Rubinstein Mark P. , Li Zihai , Paulos Chrystal M.
Published: March 2023

These data support mechanisms of antitumor efficacy elicited by briefly expanded Th17 cells, including the contribution of host cells and cytokines to immunity, resident memory qualities of persisting Th17 cells, and the impact of IL-6 blockade on systemic cytokine release.
Figure S2 from Modeling Acquired Resistance to the Second-Generation Androgen Receptor Antagonist Enzalutamide in the TRAMP Model of Prostate Cancer
Authors: Cerasuolo Marianna , Maccarinelli Federica , Coltrini Daniela , Mahmoud Ali Mokhtar , Marolda Viviana , Ghedini Gaia Cristina , Rezzola Sara , Giacomini Arianna , Triggiani Luca , Kostrzewa Magdalena , Verde Roberta , Paris Debora , Melck Dominique , Presta Marco , Ligresti Alessia , Ronca Roberto
Published: March 2023

The Figure shows the long term behavior of sensitive and resistant cells (in absence of enzalutamide
Tables S1 ans S2 from Extracellular-Regulated Protein Kinase 5-Mediated Control of p21 Expression Promotes Macrophage Proliferation Associated with Tumor Growth and Metastasis
Authors: Giurisato Emanuele , Lonardi Silvia , Telfer Brian , Lussoso Sarah , Risa-Ebrí Blanca , Zhang Jingwei , Russo Ilaria , Wang Jinhua , Santucci Annalisa , Finegan Katherine G. , Gray Nathanael S. , Vermi William , Tournier Cathy
Published: March 2023

Table S1: A list of the primer sequences utilized for qRT- PCR experiments Table S2: Total number of proliferating CD163+ and Iba1+ cells in human and murine tumors.
Supplementary Methods and Figure legends from Extracellular-Regulated Protein Kinase 5-Mediated Control of p21 Expression Promotes Macrophage Proliferation Associated with Tumor Growth and Metastasis
Authors: Giurisato Emanuele , Lonardi Silvia , Telfer Brian , Lussoso Sarah , Risa-Ebrí Blanca , Zhang Jingwei , Russo Ilaria , Wang Jinhua , Santucci Annalisa , Finegan Katherine G. , Gray Nathanael S. , Vermi William , Tournier Cathy
Published: March 2023

This file contains Supplementary Methods for i) isolating single cells from murine tumors and lungs, ii) magnetic bead purification of tumor-associated macrophages and monocytes, and iii) EdU labelling and staining; and Supplementary legends for Figures S1 to S13.
Supplementary Figures from Bidirectional Regulation between NDRG1 and GSK3β Controls Tumor Growth and Is Targeted by Differentiation Inducing Factor-1 in Glioblastoma
Authors: Ito Hiroshi , Watari Kosuke , Shibata Tomohiro , Miyamoto Tomofumi , Murakami Yuichi , Nakahara Yukiko , Izumi Hiroto , Wakimoto Hiroaki , Kuwano Michihiko , Abe Tatsuya , Ono Mayumi
Published: March 2023

SF1: NDRG1 silencing upregulates GSK3Î² expression and cell growth signaling pathways; SF2: NDRG1 overexpression suppresses cell growth, GSK3Î² expression and cell growth signaling pathways; SF3: Effect of WT and Î"6 deletion mutant of NDRG1 on cell growth and cell growth signaling pathway in U251 cells; SF4: DIF-1 suppresses GBM cell growth accompanied with enhanced expression of NDRG1 and decreased expression of GSK3Î²; SF5: DIF-1 suppressed GBM cell growth by enhancing NDRG1 expression and decreasing GSK3Î² expression; SF6: Measurement of the DIF-1 concentration in mouse plasma and brain; SF7: DIF-1 suppresses tumor growth by U87MG cells in orthotopic therapeutic models; SF8: NDRG1 mRNA expression level does not predict overall survival of patients with GBM.
Figures S7-S9 from Extracellular-Regulated Protein Kinase 5-Mediated Control of p21 Expression Promotes Macrophage Proliferation Associated with Tumor Growth and Metastasis
Authors: Giurisato Emanuele , Lonardi Silvia , Telfer Brian , Lussoso Sarah , Risa-Ebrí Blanca , Zhang Jingwei , Russo Ilaria , Wang Jinhua , Santucci Annalisa , Finegan Katherine G. , Gray Nathanael S. , Vermi William , Tournier Cathy
Published: March 2023

These supplementary figures show the in vitro cell culture strategies utilized in this study to demonstrate the requirement of ERK5 signaling for mediating tumor macrophage proliferation.
Supplementary Methods and Figures from Allosteric Inhibition of SHP2 Stimulates Antitumor Immunity by Transforming the Immunosuppressive Environment
Authors: Quintana Elsa , Schulze Christopher J. , Myers Darienne R. , Choy Tiffany J. , Mordec Kasia , Wildes David , Shifrin Nataliya Tobvis , Belwafa Amira , Koltun Elena S. , Gill Adrian L. , Singh Mallika , Kelsey Stephen , Goldsmith Mark A. , Nichols Robert , Smith Jacqueline A.M.
Published: March 2023

Supplementary methods, Supplementary Figures S1-S5 with legends
Figures S11-13 from Extracellular-Regulated Protein Kinase 5-Mediated Control of p21 Expression Promotes Macrophage Proliferation Associated with Tumor Growth and Metastasis
Authors: Giurisato Emanuele , Lonardi Silvia , Telfer Brian , Lussoso Sarah , Risa-Ebrí Blanca , Zhang Jingwei , Russo Ilaria , Wang Jinhua , Santucci Annalisa , Finegan Katherine G. , Gray Nathanael S. , Vermi William , Tournier Cathy
Published: March 2023

These supplementary figures show the strategies utilized to analyze populations of circulating monocytes, and alveolar and interstitial macrophages in the lung of B16-F10-bearing mice by flow cytometry.
Figures S1, S4, S5 from Extracellular-Regulated Protein Kinase 5-Mediated Control of p21 Expression Promotes Macrophage Proliferation Associated with Tumor Growth and Metastasis
Authors: Giurisato Emanuele , Lonardi Silvia , Telfer Brian , Lussoso Sarah , Risa-Ebrí Blanca , Zhang Jingwei , Russo Ilaria , Wang Jinhua , Santucci Annalisa , Finegan Katherine G. , Gray Nathanael S. , Vermi William , Tournier Cathy
Published: March 2023

These supplementary data provide evidence that human tumors comprise a high proportion of proliferating TAMs expressing ERK5 in the nucleus, scattered around the tumor tissue.
Supplementary Table 4 from Fibroblasts from Distinct Pancreatic Pathologies Exhibit Disease-Specific Properties
Authors: Barrera Lawrence N. , Evans Anthony , Lane Brian , Brumskill Sarah , Oldfield Frances E. , Campbell Fiona , Andrews Timothy , Lu Zipeng , Perez-Mancera Pedro A. , Liloglou Triantafillos , Ashworth Milton , Jalali Mehdi , Dawson Rebecca , Nunes Quentin , Phillips Phoebe A. , Timms John F. , Halloran Christopher , Greenhalf William , Neoptolemos John P. , Costello Eithne
Published: March 2023

Patient characteristics of samples included on TMAs histologically stained for TNC.
Supplementary Table 3 from Fibroblasts from Distinct Pancreatic Pathologies Exhibit Disease-Specific Properties
Authors: Barrera Lawrence N. , Evans Anthony , Lane Brian , Brumskill Sarah , Oldfield Frances E. , Campbell Fiona , Andrews Timothy , Lu Zipeng , Perez-Mancera Pedro A. , Liloglou Triantafillos , Ashworth Milton , Jalali Mehdi , Dawson Rebecca , Nunes Quentin , Phillips Phoebe A. , Timms John F. , Halloran Christopher , Greenhalf William , Neoptolemos John P. , Costello Eithne
Published: March 2023

Patient characteristics of UoL serum sample cohorts.
Supplementary Information from Methylation of HSP70 Orchestrates Its Binding to and Stabilization of BCL2 mRNA and Renders Pancreatic Cancer Cells Resistant to Therapeutics
Authors: Wang Liang , Jia Zhiliang , Xie Dacheng , Zhao Tiansuo , Tan Zhi , Zhang Shuxing , Kong Fanyang , Wei Daoyan , Xie Keping
Published: March 2023

Supplementary Figures and Tables and Methods 8 Supplemental Figures Figure S1. PRMT1 is overexpressed in multiple gastrointestinal tumors and is associated with patient overall survival. Figure S2. Genetic alterations and inflammatory factors contribute to increased PRMT1 expression during pancreatic cancer (PDA) progression. Figure S3. Altered expression and activity of PRMT1 impacts pancreatic cancer (PDA) cell migration, invasion, and growth. Figure S4. PRMT1 and HSP70 proteins exhibit subcellular co-localization and binding motifs of PRMT1-HSP70 interaction are evident. Figure S5. Arginine methylation sites of HSP70 are identified. Figure S6. Arginine methylation of HSP70 protects cells against various stresses. Figure S7. Arginine methylation of HSP70 promotes its mRNA binding and stabilization activity. Figure S8. Arginine methylation of heat shock proteins mediates therapeutic resistance in pancreatic cancer. 3 Supplemental Tables Table S1. Clinicopathologic parameters and PRMT1 expression in the pancreatic cancer patients Table S2. HA-PRMT1 and HA-ctrl binding proteins identified in mass spectrometry Table S3. Primers and peptides used in the study. Detailed Supplemental Methods for Cell Lines and Cell Culture; Plasmids and Cloning Procedures; Antibodies, siRNAs, Primers and Compounds; shRNA construct and transfection; Western blot Analysis; Alcian Blue Staining; Cell Scratch-Wound Healing Assay; Cell Invasion Assay; In Vitro Cytotoxicity and Cell Viability Assay; Immunoprecipitation Assay; Protein Purification from Bacterial or Mammalian Cells; Immunofluorescence Assay; In Vitro Methylation Assay; Protein Sequence Alignment; Mass Spectrometry Analysis; Generation of Gene Knockout Cell Lines; Annexin V-Propidium Iodide Assay; Quantitative Real-time PCR Assay; Ribonucleoprotein Immunoprecipitation; mRNA Decay Assay; Protein-Nucleic Acid Binding Assay; and Luciferase Assay.
Supplementary Figure 1 from Fibroblasts from Distinct Pancreatic Pathologies Exhibit Disease-Specific Properties
Authors: Barrera Lawrence N. , Evans Anthony , Lane Brian , Brumskill Sarah , Oldfield Frances E. , Campbell Fiona , Andrews Timothy , Lu Zipeng , Perez-Mancera Pedro A. , Liloglou Triantafillos , Ashworth Milton , Jalali Mehdi , Dawson Rebecca , Nunes Quentin , Phillips Phoebe A. , Timms John F. , Halloran Christopher , Greenhalf William , Neoptolemos John P. , Costello Eithne
Published: March 2023

Fibroblast markers and RT-PCR validation for mRNA and microRNA arrays.
Supplementary Figure legends from CoA Synthase (COASY) Mediates Radiation Resistance via PI3K Signaling in Rectal Cancer
Authors: Ferrandon Sylvain , DeVecchio Jennifer , Duraes Leonardo , Chouhan Hanumant , Karagkounis Georgios , Davenport Jacqueline , Orloff Matthew , Liska David , Kalady Matthew F.
Published: March 2023

Supplementary Figure legends
Supplementary Figure S3 from A Proof of Concept for Biomarker-Guided Targeted Therapy against Ovarian Cancer Based on Patient-Derived Tumor Xenografts
Authors: Palmer Adam C. , Plana Deborah , Gao Hui , Korn Joshua M. , Yang Guizhi , Green John , Zhang Xiamei , Velazquez Roberto , McLaughlin Margaret E. , Ruddy David A. , Kowal Colleen , Muszynski Julie , Bullock Caroline , Rivera Stacy , Rakiec Daniel P. , Elliott GiNell , Fordjour Paul , Meyer Ronald , Loo Alice , Kurth Esther , Engelman Jeffrey A. , Bitter Hans , Sellers William R. , Williams Juliet A. , Sorger Peter K.
Published: March 2023

Candidate biomarkers are not independently prognostic of survival in primary ovarian tumor samples from TCGA.
Table S3 from A Premalignant Cell-Based Model for Functionalization and Classification of PTEN Variants
Authors: Chao Jesse T. , Hollman Rocio , Meyers Warren M. , Meili Fabian , Matreyek Kenneth A. , Dean Pamela , Fowler Douglas M. , Haas Kurt , Roskelley Calvin D. , Loewen Christopher J.R.
Published: March 2023

Table S3
Supplementary Table 4 from BRG1 Loss Predisposes Lung Cancers to Replicative Stress and ATR Dependency
Authors: Gupta Manav , Concepcion Carla P. , Fahey Caroline G. , Keshishian Hasmik , Bhutkar Arjun , Brainson Christine F. , Sanchez-Rivera Francisco J. , Pessina Patrizia , Kim Jonathan Y. , Simoneau Antoine , Paschini Margherita , Beytagh Mary C. , Stanclift Caroline R. , Schenone Monica , Mani D.R. , Li Chendi , Oh Audris , Li Fei , Hu Hai , Karatza Angeliki , Bronson Roderick T. , Shaw Alice T. , Hata Aaron N. , Wong Kwok-Kin , Zou Lee , Carr Steven A. , Jacks Tyler , Kim Carla F.
Published: March 2023

Mass spectrometry-based enrichment of proteins quantified using Baf47 interaction in isogenic Brg1 wildtype and knockout cells. List includes details about identification and quantitation of proteins and is sorted by logFC.
Figure S1 from Exosomal Noncoding RNAs and Tumor Drug Resistance
Authors: Guo Chengyao , Liu Jinbo , Zhou Quanbo , Song Junmin , Zhang Zhiyong , Li Zhen , Wang Guixian , Yuan Weitang , Sun Zhenqiang
Published: March 2023

Fig. S1 Basic components of the tumor microenvironment. Hypoxia induces epithelial ovarian cancer (EOC) cells to exert cisplatin resistance through the following two approaches: regulation of the signaling pathway and internalization of EOC cells.
Figure S2 from BRG1 Loss Predisposes Lung Cancers to Replicative Stress and ATR Dependency
Authors: Gupta Manav , Concepcion Carla P. , Fahey Caroline G. , Keshishian Hasmik , Bhutkar Arjun , Brainson Christine F. , Sanchez-Rivera Francisco J. , Pessina Patrizia , Kim Jonathan Y. , Simoneau Antoine , Paschini Margherita , Beytagh Mary C. , Stanclift Caroline R. , Schenone Monica , Mani D.R. , Li Chendi , Oh Audris , Li Fei , Hu Hai , Karatza Angeliki , Bronson Roderick T. , Shaw Alice T. , Hata Aaron N. , Wong Kwok-Kin , Zou Lee , Carr Steven A. , Jacks Tyler , Kim Carla F.
Published: March 2023

Figure S2 shows proliferation, cell cycle, and replication fork related changes in human isogenic models of BRG1 loss.
Figure S5 from Tumor Cell–Derived IL1β Promotes Desmoplasia and Immune Suppression in Pancreatic Cancer
Authors: Das Shipra , Shapiro Beny , Vucic Emily A. , Vogt Sandra , Bar-Sagi Dafna
Published: March 2023

NLRP3 inflammasome regulates pro-IL-1b processing in pancreatic tumor cells.
Supplemental Figures 1-6 from Identification of a Small-Molecule Inhibitor That Disrupts the SIX1/EYA2 Complex, EMT, and Metastasis
Authors: Zhou Hengbo , Blevins Melanie A. , Hsu Jessica Y. , Kong Deguang , Galbraith Matthew D. , Goodspeed Andrew , Culp-Hill Rachel , Oliphant Michael U.J. , Ramirez Dominique , Zhang Lingdi , Trinidad-Pineiro Jennyvette , Mathews Griner Lesley , King Rebecca , Barnaeva Elena , Hu Xin , Southall Noel T. , Ferrer Marc , Gustafson Daniel L. , Regan Daniel P. , D'Alessandro Angelo , Costello James C. , Patnaik Samarjit , Marugan Juan , Zhao Rui , Ford Heide L.
Published: March 2023

Supplemental figures (1-6) demonstrate the efficacy of parental SIX1/EYA2 inhibitor, synthesis of compound 8430, endogenous SIX1 and EYA2 expression in tumor lines, as well as 8430's transcriptional impact, pharmacokinetic/toxicity and effect on metastasis.
Supplementary Figure 1 from CTGF Mediates Tumor–Stroma Interactions between Hepatoma Cells and Hepatic Stellate Cells to Accelerate HCC Progression
Authors: Makino Yuki , Hikita Hayato , Kodama Takahiro , Shigekawa Minoru , Yamada Ryoko , Sakamori Ryotaro , Eguchi Hidetoshi , Morii Eiichi , Yokoi Hideki , Mukoyama Masashi , Hiroshi Suemizu , Tatsumi Tomohide , Takehara Tetsuo
Published: March 2023

Supplementary Fig. 1. CTGF is mainly derived from tumor cells in liver tumors. (A) Immunohistochemistry for AFP and CTGF in serial sections of human HCC tissues. (B) Double immunofluorescence staining for CTGF and α-SMA in human HCC tissues. (C) Immunohistochemistry for AFP and CTGF in serial sections of liver tumors from 8-month-old KrasG12D mice. (D) Double immunofluorescence staining for CTGF and α-SMA in 9-month-old KrasG12D mice. Arrowheads of the same color indicate the identical cells in serial sections (A and C).
Supplemental0530.pdf from Deletion of Glutathione S-Transferase Omega 1 Activates Type I Interferon Genes and Downregulates Tissue Factor
Authors: Xu Yibin , Bankhead Armand , Tian Xiaoli , Tang Jianming , Ljungman Mats , Neamati Nouri
Published: March 2023

Supplemental Figures 1-15 and Supplemental Tables 1-32
Supplemental Table S2. from Ablation of the Brca1–Palb2 Interaction Phenocopies Fanconi Anemia in Mice
Authors: Park Dongju , Bergin Stephen M. , Jones Dan , Ru Peng , Koivisto Christopher S. , Jeon Young-Jun , Sizemore Gina M. , Kladney Raleigh D. , Hadjis Ashley , Shakya Reena , Ludwig Thomas
Published: March 2023

Notch1 mutations detected by exome sequencing from Brca1L1363P/ L1363P; p53+/- thymic tumor
Supplementary Data from A Biophysical Model Uncovers the Size Distribution of Migrating Cell Clusters across Cancer Types
Authors: Bocci Federico , Kumar Jolly Mohit , Onuchic José Nelson
Published: March 2023

The first part of the supplementary information provides details on the derivation of the model. The second part provides supplementary figures.
Supplementary Figure 6 from Chromothripsis in Human Breast Cancer
Authors: Bolkestein Michiel , Wong John K.L. , Thewes Verena , Körber Verena , Hlevnjak Mario , Elgaafary Shaymaa , Schulze Markus , Kommoss Felix K.F. , Sinn Hans-Peter , Anzeneder Tobias , Hirsch Steffen , Devens Frauke , Schröter Petra , Höfer Thomas , Schneeweiss Andreas , Lichter Peter , Zapatka Marc , Ernst Aurélie
Published: March 2023

Timed copy number changes and chromothriptic events in sample pairs
Figure S2 from HDAC6 Inhibition Synergizes with Anti-PD-L1 Therapy in ARID1A-Inactivated Ovarian Cancer
Authors: Fukumoto Takeshi , Fatkhutdinov Nail , Zundell Joseph A. , Tcyganov Evgenii N. , Nacarelli Timothy , Karakashev Sergey , Wu Shuai , Liu Qin , Gabrilovich Dmitry I. , Zhang Rugang
Published: March 2023

Figure S2 shows ARID1A suppresses PD-L1 expression.
Supplementary Figure 1 from Chromothripsis in Human Breast Cancer
Authors: Bolkestein Michiel , Wong John K.L. , Thewes Verena , Körber Verena , Hlevnjak Mario , Elgaafary Shaymaa , Schulze Markus , Kommoss Felix K.F. , Sinn Hans-Peter , Anzeneder Tobias , Hirsch Steffen , Devens Frauke , Schröter Petra , Höfer Thomas , Schneeweiss Andreas , Lichter Peter , Zapatka Marc , Ernst Aurélie
Published: March 2023

Overall chromothripsis prevalence (DKFZ-HIPO17, WES), link with clinical outcome and chromothripsis â€©occurrence per chromosome for each breast cancer subtype
Supplementary Fig 3 from FGFR1 Is Critical for RBL2 Loss–Driven Tumor Development and Requires PLCG1 Activation for Continued Growth of Small Cell Lung Cancer
Authors: Kim Kee-Beom , Kim Youngchul , Rivard Christopher J. , Kim Dong-Wook , Park Kwon-Sik
Published: March 2023

H&E staining and immunostaining for pHH3 (phospho-histone H3) on sections of subcutaneous tumors generated from control or Ad-Cre-infected Fgfr1D/lox Rb1/Trp53/Rbl2 SCLC cells. DAPI (blue) stains nuclei. Scale bars: 50 µm.
Supplementary Data from ERINA Is an Estrogen-Responsive LncRNA That Drives Breast Cancer through the E2F1/RB1 Pathway
Authors: Fang Zihui , Wang Yue , Wang Zehua , Xu Meishu , Ren Songrong , Yang Da , Hong Mei , Xie Wen
Published: March 2023

Supplementary Figures 1-5. Supplementary Figure 1. ERINA is a nuclear lncRNA that affects the survival and cell proliferation marker of ER-positive breast cancer patients. Supplementary Figure 2. ERINA knockdown and overexpression efficiency and the morphology change of knockdown cells. Supplementary Figure 3. RNA sequencing analysis showed the number of up-regulated genes and downregulated genes in T47D cells. Supplementary Figure 4. GSEA analysis revealed ERINA played a crucial role in RB1-involved pathway. Supplementary Figure 5. ChIP-seq analysis reveals the binding of RNA polymerase II within the promoter region of ERINA. (A) Alignment of RNA polymerase II ChIP-seq in MCF7 cells. The binding peak and genomic locus are shown.
Supplementary Figures from Comprehensive Analysis of Radiomic Datasets by RadAR
Authors: Benelli Matteo , Barucci Andrea , Zoppetti Nicola , Calusi Silvia , Redapi Laura , Della Gala Giuseppe , Piffer Stefano , Bernardi Luca , Fusi Franco , Pallotta Stefania
Published: March 2023

Supplementary Figures 1-5. Supplementary Figure 1. Box plots showing the distribution of the top 4 radiomic features resulting from differential analysis of Dead vs Alive patients in the Lung1 datasets. Supplementary Figure 2. Box plots showing the distribution of the top 4 radiomic features resulting from differential analysis of Dead vs Alive patients in the Lung1 datasets. Values were scaled by min-max procedure. Supplementary Figure 3. Box plot of the distribution of the feature "Maximum" between alive and dead patients in Lung1 dataset using original (left) and normalized (right) values. The p-value of the difference of feature levels between alive and dead patients was estimated by Wilcoxon-Mann-Whitney test and adjusted by Benjamini-Hochberg procedure (False Discovery Rate, FDR). Supplementary Figure 4. Box plots showing the distribution of the top 2 radiomic features resulting from differential analysis of patients in the Lung1 datasets across disease stages. Values were quantilenormalized. Supplementary Figure 5. Heat map of radiomic profiles of n=388 patients from the Lung1 dataset.
Supplementary Data from Comprehensive Analysis of Radiomic Datasets by RadAR
Authors: Benelli Matteo , Barucci Andrea , Zoppetti Nicola , Calusi Silvia , Redapi Laura , Della Gala Giuseppe , Piffer Stefano , Bernardi Luca , Fusi Franco , Pallotta Stefania
Published: March 2023

RadaR tutorial
Quick guide to model assumptions from Pharmacokinetic Profiles Determine Optimal Combination Treatment Schedules in Computational Models of Drug Resistance
Authors: Irurzun-Arana Itziar , McDonald Thomas O. , Trocóniz Iñaki F. , Michor Franziska
Published: March 2023

Quick guide to model assumptions
Figure S3 from Microenvironmental Cues Determine Tumor Cell Susceptibility to Neutrophil Cytotoxicity
Authors: Gershkovitz Maya , Fainsod-Levi Tanya , Khawaled Saleh , Shaul Merav E. , Sionov Ronit V. , Cohen-Daniel Leonor , Aqeilan Rami I. , Shaul Yoav D. , Fridlender Zvi G. , Granot Zvi
Published: March 2023

Supplemental Figure S3. Inverse correlation between E-Cadherin expression and TRPM2 expression in primary and metastatic 4T1 tumors. Immunofluorescent staining of TRPM2 (red) and E-Cadherin (green) in 4T1 primary tumor (A) in a lung metastatic 4T1 tumor (B).
Supplementary Methods from Genetic Variants Implicate Dual Oxidase-2 in Familial and Sporadic Nonmedullary Thyroid Cancer
Authors: Bann Darrin V. , Jin Qunyan , Sheldon Kathryn E. , Houser Kenneth R. , Nguyen Lan , Warrick Joshua I. , Baker Maria J. , Broach James R. , Gerhard Glenn S. , Goldenberg David
Published: March 2023

Supplemental Methods
Video S6 from ΔNp63-Regulated Epithelial-to-Mesenchymal Transition State Heterogeneity Confers a Leader–Follower Relationship That Drives Collective Invasion
Authors: Westcott Jill M. , Camacho Sharon , Nasir Apsra , Huysman Molly E. , Rahhal Raneen , Dang Tuyen T. , Riegel Anna T. , Brekken Rolf A. , Pearson Gray W.
Published: March 2023

Live imaging of the inset region of clustered spheroids containing SUM159O cells expressing control or a p63 shRNA (H2B:mCherry, red, nuclei) showing cell motility.
Supplementary Data from ΔNp63-Regulated Epithelial-to-Mesenchymal Transition State Heterogeneity Confers a Leader–Follower Relationship That Drives Collective Invasion
Authors: Westcott Jill M. , Camacho Sharon , Nasir Apsra , Huysman Molly E. , Rahhal Raneen , Dang Tuyen T. , Riegel Anna T. , Brekken Rolf A. , Pearson Gray W.
Published: March 2023

Supplementary Tables S1-S8
Supplementary Data from Plasma Gelsolin Inhibits CD8+ T-cell Function and Regulates Glutathione Production to Confer Chemoresistance in Ovarian Cancer
Authors: Asare-Werehene Meshach , Communal Laudine , Carmona Euridice , Han Youngjin , Song Yong Sang , Burger Dylan , Mes-Masson Anne-Marie , Tsang Benjamin K.
Published: March 2023

This file contains supplementary figures and tables with their legends.
Supplementary Figure S1 from Linking Transcriptomic and Imaging Data Defines Features of a Favorable Tumor Immune Microenvironment and Identifies a Combination Biomarker for Primary Melanoma
Authors: Gartrell-Corrado Robyn D. , Chen Andrew X. , Rizk Emanuelle M. , Marks Douglas K. , Bogardus Margaret H. , Hart Thomas D. , Silverman Andrew M. , Bayan Claire-Audrey Y. , Finkel Grace G. , Barker Luke W. , Komatsubara Kimberly M. , Carvajal Richard D. , Horst Basil A. , Chang Rui , Monod Anthea , Rabadan Raul , Saenger Yvonne M.
Published: March 2023

CD8/CD68 ratio is predictive of recurrence. Receiver Operating Characteristic (ROC) curve analysis for visceral recurrence (n=52, AUC=0.684, p=0.0350 by Mann-Whitney U test).
Supplementary Figure S7 from Blocking Angiopoietin-2 Promotes Vascular Damage and Growth Inhibition in Mouse Tumors Treated with Small Doses of Radiation
Authors: Kallio Pauliina , Jokinen Elina , Högström Jenny , Das Suvendu , Heino Sarika , Lähde Marianne , Brodkin Jefim , Korhonen Emilia A. , Alitalo Kari
Published: March 2023

Supplementary Figure S7
Supplementary Figure S6 from Blocking Angiopoietin-2 Promotes Vascular Damage and Growth Inhibition in Mouse Tumors Treated with Small Doses of Radiation
Authors: Kallio Pauliina , Jokinen Elina , Högström Jenny , Das Suvendu , Heino Sarika , Lähde Marianne , Brodkin Jefim , Korhonen Emilia A. , Alitalo Kari
Published: March 2023

Supplementary Figure S6
Supplementary Figure S3 from Blocking Angiopoietin-2 Promotes Vascular Damage and Growth Inhibition in Mouse Tumors Treated with Small Doses of Radiation
Authors: Kallio Pauliina , Jokinen Elina , Högström Jenny , Das Suvendu , Heino Sarika , Lähde Marianne , Brodkin Jefim , Korhonen Emilia A. , Alitalo Kari
Published: March 2023

Supplementary Figure S3
Figure S5 from Intratumoral Copper Modulates PD-L1 Expression and Influences Tumor Immune Evasion
Authors: Voli Florida , Valli Emanuele , Lerra Luigi , Kimpton Kathleen , Saletta Federica , Giorgi Federico M. , Mercatelli Daniele , Rouaen Jourdin R.C. , Shen Sylvie , Murray Jayne E. , Ahmed-Cox Aria , Cirillo Giuseppe , Mayoh Chelsea , Beavis Paul A. , Haber Michelle , Trapani Joseph A. , Kavallaris Maria , Vittorio Orazio
Published: March 2023

DC increases tumor-infiltrating immune cells in Th-MYCN mice
Suppl. Table 2 from Oligosaccharyltransferase Inhibition Overcomes Therapeutic Resistance to EGFR Tyrosine Kinase Inhibitors
Authors: Lopez Sambrooks Cecilia , Baro Marta , Quijano Amanda , Narayan Azeet , Cui Wei , Greninger Patricia , Egan Regina , Patel Abhijit , Benes Cyril H. , Saltzman W. Mark , Contessa Joseph N.
Published: March 2023

Deep sequencing of lung cancer cell lines to determine the proportion of EGFR mutations.
Suppl Fig. 2 from Oligosaccharyltransferase Inhibition Overcomes Therapeutic Resistance to EGFR Tyrosine Kinase Inhibitors
Authors: Lopez Sambrooks Cecilia , Baro Marta , Quijano Amanda , Narayan Azeet , Cui Wei , Greninger Patricia , Egan Regina , Patel Abhijit , Benes Cyril H. , Saltzman W. Mark , Contessa Joseph N.
Published: March 2023

Characterization of the Osimertinib resistant H1975 cells.
Suppl Fig. 1 from Oligosaccharyltransferase Inhibition Overcomes Therapeutic Resistance to EGFR Tyrosine Kinase Inhibitors
Authors: Lopez Sambrooks Cecilia , Baro Marta , Quijano Amanda , Narayan Azeet , Cui Wei , Greninger Patricia , Egan Regina , Patel Abhijit , Benes Cyril H. , Saltzman W. Mark , Contessa Joseph N.
Published: March 2023

Apoptosis susceptibility of KRAS mutant A549 cell line following treatment with NGI-1, Erlotinib or both.
Supplementary Table 4 from Cellular and Genetic Determinants of the Sensitivity of Cancer to α-Particle Irradiation
Authors: Yard Brian D. , Gopal Priyanka , Bannik Kristina , Siemeister Gerhard , Hagemann Urs B. , Abazeed Mohamed E.
Published: March 2023

Gene mutations and survival after irradiation.
Table. S2 from Hes1 Is Essential in Proliferating Ductal Cell–Mediated Development of Intrahepatic Cholangiocarcinoma
Authors: Matsumori Tomoaki , Kodama Yuzo , Takai Atsushi , Shiokawa Masahiro , Nishikawa Yoshihiro , Matsumoto Tomonori , Takeda Haruhiko , Marui Saiko , Okada Hirokazu , Hirano Tomonori , Kuwada Takeshi , Sogabe Yuko , Kakiuchi Nobuyuki , Tomono Teruko , Mima Atsushi , Morita Toshihiro , Ueda Tatsuki , Tsuda Motoyuki , Yamauchi Yuki , Kuriyama Katsutoshi , Sakuma Yojiro , Ota Yuji , Maruno Takahisa , Uza Norimitsu , Marusawa Hiroyuki , Kageyama Ryoichiro , Chiba Tsutomu , Seno Hiroshi
Published: March 2023

Differentially expressed genes between 48-week-old AlbcreK; Hes1WT/WT and AlbcreK; Hes1flox/flox mice.
Supplementary Figure 3 from Cellular and Genetic Determinants of the Sensitivity of Cancer to α-Particle Irradiation
Authors: Yard Brian D. , Gopal Priyanka , Bannik Kristina , Siemeister Gerhard , Hagemann Urs B. , Abazeed Mohamed E.
Published: March 2023

Incubation time does not impact alpha-particle irradiation sensitivity on the basis of cellular doubling time.
Fig. S4 from Hes1 Is Essential in Proliferating Ductal Cell–Mediated Development of Intrahepatic Cholangiocarcinoma
Authors: Matsumori Tomoaki , Kodama Yuzo , Takai Atsushi , Shiokawa Masahiro , Nishikawa Yoshihiro , Matsumoto Tomonori , Takeda Haruhiko , Marui Saiko , Okada Hirokazu , Hirano Tomonori , Kuwada Takeshi , Sogabe Yuko , Kakiuchi Nobuyuki , Tomono Teruko , Mima Atsushi , Morita Toshihiro , Ueda Tatsuki , Tsuda Motoyuki , Yamauchi Yuki , Kuriyama Katsutoshi , Sakuma Yojiro , Ota Yuji , Maruno Takahisa , Uza Norimitsu , Marusawa Hiroyuki , Kageyama Ryoichiro , Chiba Tsutomu , Seno Hiroshi
Published: March 2023

Analyzes of immunohistochemistry and relative mRNA expression levels in liver sections of AlbcreKP (WT), AlbcreKP; RosaNotchOE/+, and AlbcreKP; RosaNotchOE/+; Hes1flox/flox mice at 8 weeks of age.
Supplementary Table 3 from Widespread Repression of Gene Expression in Cancer by a Wnt/β-Catenin/MAPK Pathway
Authors: Harmston Nathan , Lim Jun Yi Stanley , Arqués Oriol , Palmer Héctor G. , Petretto Enrico , Virshup David M. , Madan Babita
Published: March 2023

Supplementary Table 3
Supplementary Table 2 from Widespread Repression of Gene Expression in Cancer by a Wnt/β-Catenin/MAPK Pathway
Authors: Harmston Nathan , Lim Jun Yi Stanley , Arqués Oriol , Palmer Héctor G. , Petretto Enrico , Virshup David M. , Madan Babita
Published: March 2023

Supplementary Table 2
Supplementary Video 1 from ORAI2 Promotes Gastric Cancer Tumorigenicity and Metastasis through PI3K/Akt Signaling and MAPK-Dependent Focal Adhesion Disassembly
Authors: Wu Shayi , Chen Miao , Huang Jiao , Zhang Feifei , Lv Zhaojie , Jia Yongxu , Cui Yu-Zhu , Sun Liang-Zhan , Wang Ying , Tang Ying , Verhoeft Krista R. , Li Yan , Qin Yanru , Lin Xiang , Guan Xin-Yuan , Lam Ka-On
Published: March 2023

SUN216-Ctl
Supplementary Table and Figures from ORAI2 Promotes Gastric Cancer Tumorigenicity and Metastasis through PI3K/Akt Signaling and MAPK-Dependent Focal Adhesion Disassembly
Authors: Wu Shayi , Chen Miao , Huang Jiao , Zhang Feifei , Lv Zhaojie , Jia Yongxu , Cui Yu-Zhu , Sun Liang-Zhan , Wang Ying , Tang Ying , Verhoeft Krista R. , Li Yan , Qin Yanru , Lin Xiang , Guan Xin-Yuan , Lam Ka-On
Published: March 2023

Table and Figures
Supplementary Figure 4 from CKAP2L Promotes Non–Small Cell Lung Cancer Progression through Regulation of Transcription Elongation
Authors: Monteverde Tiziana , Sahoo Sudhakar , La Montagna Manuela , Magee Peter , Shi Lei , Lee Dave , Sellers Robert , Baker Alexander R. , Leong Hui Sun , Fassan Matteo , Garofalo Michela
Published: March 2023

Characterization of CKAP2L role in cell proliferation
Supplementary figures and legends from Nonsense-Mediated RNA Decay Is a Unique Vulnerability of Cancer Cells Harboring SF3B1 or U2AF1 Mutations
Authors: Cheruiyot Abigael , Li Shan , Nonavinkere Srivatsan Sridhar , Ahmed Tanzir , Chen Yuhao , Lemacon Delphine S. , Li Ying , Yang Zheng , Wadugu Brian A. , Warner Wayne A. , Pruett-Miller Shondra M. , Obeng Esther A. , Link Daniel C. , He Dalin , Xiao Fei , Wang Xiaowei , Bailis Julie M. , Walter Matthew J. , You Zhongsheng
Published: March 2023

Supplementary figures and legends
Supplementary Data from Afatinib Exerts Immunomodulatory Effects by Targeting the Pyrimidine Biosynthesis Enzyme CAD
Authors: Tu Hsin-Fang , Ko Chun-Jung , Lee Ching-Tai , Lee Cheng-Fan , Lan Shao-Wei , Lin Hsin-Hsien , Lin Hsin-Ying , Ku Chia-Chi , Lee Der-Yen , Chen I-Chun , Chuang Ya-Hui , Del Caño-Ochoa Francisco , Ramón-Maiques Santiago , Ho Chao-Chi , Lee Ming-Shyue , Chang Geen-Dong
Published: March 2023

It includes supplementary material and method, one table, and figure and figure legend
Table S2 from CstF64-Induced Shortening of the BID 3′UTR Promotes Esophageal Squamous Cell Carcinoma Progression by Disrupting ceRNA Cross-talk with ZFP36L2
Authors: Lin Ai , Ji Ping , Niu Xiangjie , Zhao Xuan , Chen Yamei , Liu Weiling , Liu Yachen , Fan Wenyi , Sun Yanxia , Miao Chuanwang , Zhang Shaosen , Tan Wen , Lin Dongxin , Wagner Eric J. , Wu Chen
Published: March 2023

Sequences of primers and siRNAs used in this study
Supplementary File 1 from Network Analysis Identifies Regulators of Basal-Like Breast Cancer Reprogramming and Endocrine Therapy Vulnerability
Authors: Choi Sea R. , Hwang Chae Young , Lee Jonghoon , Cho Kwang-Hyun
Published: March 2023

List of primers.
Supplementary Figures from Quantitative In Vivo Analyses Reveal a Complex Pharmacogenomic Landscape in Lung Adenocarcinoma
Authors: Li Chuan , Lin Wen-Yang , Rizvi Hira , Cai Hongchen , McFarland Christopher D. , Rogers Zoe N. , Yousefi Maryam , Winters Ian P. , Rudin Charles M. , Petrov Dmitri A. , Winslow Monte M.
Published: March 2023

Supplementary Figure 1-16 are included.