bluuebunny/crossref_metadata_2025 huggingface dataset:
Enhancement of the Robustness on Advancing Layer Method with Trimmed Hexahedral Volume Mesh for the Generation of the Boundary Layer Grids
Authors: Jeong Kwang-Leol , Park Sunho , Jeong Se-Min
Published: February 2023

When performing simulations using computational fluid dynamics, the grid systems in the viscous boundary layer regions are important because the velocity and pressure change very rapidly in these regions. Especially for the turbulent flows, thin grids should be arranged densely in the direction perpendicular to the wall. In this study, the advancing layer method, which has been applied mostly to tetrahedral meshes, is applied to trimmed hexahedral meshes. To generate boundary layer meshes with non-intersecting grid lines near the wall boundaries having concave corners and narrow gaps, the directional vectors of grid lines and faces are smoothed, and the displacement vector fields calculated using the Laplace equation were utilized. Firstly, the details on the newly developed methods are introduced showing simple two-dimensional cases as examples. After applying the methods for a complex three-dimensional geometry to check its applicability and investigating the generated grid systems, the numerical simulations of propeller open water test for INSEAN E779A marine propeller were carried out by simpleFoam, one of the standard solvers of OpenFOAM. The computational results showed good agreement with the experimental results. Therefore, in conclusion, the developed advancing layer method is an appropriate method for generating boundary layer grids of a trimmed hexahedral mesh.
Age and Depositional Environment of Whale-Bearing Sedimentary Succession from the Lower Pliocene of Tuscany (Italy): Insights from Palaeomagnetism, Calcareous Microfossils and Facies Analyses
Authors: Marini Mattia , Foresi Luca Maria , Barbagallo Viviana , Bisconti Michelangelo , Di Stefano Agata , Muttoni Giovanni , Martini Ivan
Published: February 2023

A c. 31 m thick section straddling the fossil find of an Early Pliocene baleen whale (“Brunella”, hereafter), made in 2007 in the sedimentary fill of the Middle Ombrone Basin of Tuscany, is investigated for depositional age and environment combining palaeomagnetic, micropalaeontological (Foraminifera and calcareous nannofossils) and sedimentary facies analyses. Resting unconformably onto Late Miocene continental deposits, the Early Pliocene marine deposits include, from bottom to top, a coarse-grained wave-winnowing lag, the few metres-thick fossiliferous sandstone bedset from which Brunella was unearthed, and several metres of clays. The stratigraphic organisation of these deposits indicate deposition in a deepening upward inner shelf environment. Successful isolation of characteristic remanent magnetisation and calcareous nannofossil content indicate the investigated marine section was deposited during the interval of polarity Chron C3n.2n corresponding to the basal part of the Mediterranean nannofossil zone MNN13 (between Helicosphaera sellii Base common and the Amaurolithus primus Top) and allow estimating the depositional age of Brunella to c. 4.6 Ma. Sedimentary facies, benthic Foraminifera association and anisotropy of magnetic susceptibility characterising the deposits that embedded Brunella suggest deposition above the fair-weather base level.
Global Analyses of Multi-Locus Sequence Typing Data Reveal Geographic Differentiation, Hybridization, and Recombination in the Cryptococcus gattii Species Complex
Authors: Hitchcock Megan , Xu Jianping
Published: February 2023

Cryptococcus gattii species complex (CGSC) is a basidiomycete haploid yeast and globally distributed mammalian pathogen. CGSC is comprised of six distinct lineages (VGI, VGII, VGIII, VGIV, VGV, and VGVI); however, the geographical distribution and population structure of these lineages is incompletely described. In this study, we analyze published multi-locus sequence data at seven loci for 566 previously recorded sequence types (STs) encompassing four distinct lineages (VGI, VGII, VGIII, and VGIV) within the CGSC. We investigate indicators of both clonal dispersal and recombination. Population genetic analyses of the 375 STs representing 1202 isolates with geographic information and 188 STs representing 788 isolates with ecological source data suggested historically differentiated geographic populations with infrequent long-distance gene flow. Phylogenetic analyses of sequences at the individual locus and of the concatenated sequences at all seven loci among all 566 STs revealed distinct clusters largely congruent with four major distinct lineages. However, 23 of the 566 STs (4%) each contained alleles at the seven loci belonging to two or more lineages, consistent with their hybrid origins among lineages. Within each of the four major lineages, phylogenetic incompatibility analyses revealed evidence for recombination. However, linkage disequilibrium analyses rejected the hypothesis of random recombination across all samples. Together, our results suggest evidence for historical geographical differentiation, sexual recombination, hybridization, and both long-distance and localized clonal expansion in the global CGSC population.
ABO Blood Groups as a Disease Marker to Predict Atrial Fibrillation Recurrence after Catheter Ablation
Authors: Liu Shin-Huei , Chhay Chheng , Hu Yu-Feng , Lin Yenn-Jiang , Chang Shih-Lin , Lo Li-Wei , Chung Fa-Po , Tuan Ta-Chuan , Chao Tze-Fan , Liao Jo-Nan , Lin Chin-Yu , Chang Ting-Yung , Kuo Ling , Liu Chih-Min , Ton An Nu-Khanh , Yugo Dony , Chen Shih-Ann
Published: February 2023

Chronic inflammation harbors a vulnerable substrate for atrial fibrillation (AF) recurrence after catheter ablation. However, whether the ABO blood types are associated with AF recurrence after catheter ablation is unknown. A total of 2106 AF patients (1552 men, 554 women) who underwent catheter ablation were enrolled retrospectively. The patients were separated into two groups according to the ABO blood types, the O-type (n = 910, 43.21%) and the non-O-type groups (A, B, or AB type) (n = 1196, 56.79%). The clinical characteristics, AF recurrence, and risk predictors were investigated. The non-O type blood group had a higher incidence of diabetes mellitus (11.90 vs. 9.03%, p = 0.035), larger left atrial diameters (39.43 ± 6.74 vs. 38.20 ± 6.47, p = 0.007), and decreased left ventricular ejection fractions (56.01 ± 7.33 vs. 58.65 ± 6.34, p = 0.044) than the O-type blood group. In the non-paroxysmal AF (non-PAF) patients, the non-O-type blood groups have significantly higher incidences of very late recurrence (67.46 vs. 32.54%, p = 0.045) than those in the O-type blood group. The multivariate analysis revealed the non-O blood group (odd ratio 1.40, p = 0.022) and amiodarone (odd ratio 1.44, p = 0.013) were independent predictors for very late recurrence in the non-PAF patients after catheter ablation, which could be applied as a useful disease marker. This work highlighted the potential link between the ABO blood types and inflammatory activities that contribute to the pathogenic development of AF. The presence of surface antigens on cardiomyocytes or blood cells in patients with different ABO blood types will have an impactful role in risk stratification for AF prognosis after catheter ablation. Further prospective studies are warranted to prove the translational benefits of the ABO blood types for the patients receiving catheter ablation.
A Practical Assessment of the Postoperative Management in Lung Cancer Surgery
Authors: Bertolaccini Luca , Mohamed Shehab , Uslenghi Clarissa , Chiari Matteo , Girelli Lara , Lo Iacono Giorgio , Spaggiari Lorenzo
Published: February 2023

Postoperative management after major and minor thoracic surgeries is crucial for patient recovery and can be challenging. Major thoracic surgeries, such as extensive pulmonary resections, especially in patients with poor health status, may require intensive surveillance, particularly during the first 24–72 h after surgery. Moreover, thanks to the demographic development and medical progress in perioperative medicine, more patients with comorbidities undergoing thoracic procedures require proper management in the postoperative period to improve prognosis and decrease hospital stay. Here, we summarize the main thoracic postoperative complications in order to clarify how to prevent them through a series of standardized procedures.
Identification of Five Tumor Antigens for Development and Two Immune Subtypes for Personalized Medicine of mRNA Vaccines in Papillary Renal Cell Carcinoma
Authors: Hu Jianpei , Yuan Zhongze , Jiang Yifen , Mo Zengnan
Published: February 2023

Increasing evidence has revealed the promise of mRNA-type cancer vaccines as a new direction for cancer immune treatment in several solid tumors, however, its application in papillary renal cell carcinoma (PRCC) remains unclear. The purpose of this study was to identify potential tumor antigens and robust immune subtypes for the development and appropriate use of anti-PRCC mRNA vaccines, respectively. Raw sequencing data and clinical information of PRCC patients were downloaded from The Cancer Genome Atlas (TCGA) database. The cBioPortal was utilized for the visualization and comparison of genetic alterations. The TIMER was used to assess the correlation between preliminary tumor antigens and the abundance of infiltrated antigen presenting cells (APCs). Immune subtypes were determined by the consensus clustering algorithm, and clinical and molecular discrepancies were further explored for a deeper understanding of immune subtypes. Five tumor antigens, including ALOX15B, HS3ST2, PIGR, ZMYND15 and LIMK1, were identified for PRCC, which were correlated with patients’ prognoses and infiltration levels of APCs. Two immune subtypes (IS1 and IS2) were disclosed with obviously distinct clinical and molecular characteristics. Compared with IS2, IS1 exhibited a significantly immune-suppressive phenotype, which largely weakened the efficacy of the mRNA vaccine. Overall, our study provides some insights for the design of anti-PRCC mRNA vaccines and, more importantly, the selection of suitable patients to be vaccinated.
Current Situation of Diagnosis and Treatment of HER2-Positive Metastatic Breast Cancer Patients in China: A Nationwide Cross-Sectional Survey of Doctors
Authors: Jiang Kuikui , Zhou Danyang , Hong Ruoxi , Lu Qianyi , Xu Fei , Xia Wen , Zheng Qiufan , Wang Shusen
Published: February 2023

Background: The Advanced Breast Cancer Alliance conducted a nationwide investigation to understand the current situation of the diagnosis and treatment of human epidermal growth factor receptor 2 (HER2)-positive metastatic breast cancer (MBC) patients. Methods: In 2019, electronic questionnaires including basic information about respondents, characteristics of patients, and the present status of diagnosis and treatment were sent to 495 doctors from 203 medical centers covering 28 provinces. Results: The factors that influenced treatment plans included the disease process, the performance status, and the economic status of patients. Regimens and response to neoadjuvant/adjuvant chemotherapy were important factors in the decision of the first-line treatment. Overall, 54% of doctors retained trastuzumab and replaced chemotherapy drugs in second-line treatment regimens for patients with progression-free survival (PFS) ≥ 6 months in the first-line setting, while 52% of participants chose pyrotinib plus capecitabine for patients with PFS < 6 months. Economic factors played an important role in doctors’ decision-making and the varying treatment options for respondents in first-tier, second-tier, and other cities. Conclusions: This large-scale survey regarding the diagnosis and treatment of HER2-positive MBC patients revealed that clinical decisions made by Chinese doctors followed the guidelines, but their choices were constrained by economic factors.
Identification of Immune-Related Risk Genes in Osteoarthritis Based on Bioinformatics Analysis and Machine Learning
Authors: Xu Jintao , Chen Kai , Yu Yaohui , Wang Yishu , Zhu Yi , Zou Xiangjie , Jiang Yiqiu
Published: February 2023

In this research, we aimed to perform a comprehensive bioinformatic analysis of immune cell infiltration in osteoarthritic cartilage and synovium and identify potential risk genes. Datasets were downloaded from the Gene Expression Omnibus database. We integrated the datasets, removed the batch effects and analyzed immune cell infiltration along with differentially expressed genes (DEGs). Weighted gene co-expression network analysis (WGCNA) was used to identify the positively correlated gene modules. LASSO (least absolute shrinkage and selection operator)-cox regression analysis was performed to screen the characteristic genes. The intersection of the DEGs, characteristic genes and module genes was identified as the risk genes. The WGCNA analysis demonstrates that the blue module was highly correlated and statistically significant as well as enriched in immune-related signaling pathways and biological functions in the KEGG and GO enrichment. LASSO-cox regression analysis screened 11 characteristic genes from the hub genes of the blue module. After the DEG, characteristic gene and immune-related gene datasets were intersected, three genes, PTGS1, HLA-DMB and GPR137B, were identified as the risk genes in this research. In this research, we identified three risk genes related to the immune system in osteoarthritis and provide a feasible approach to drug development in the future.
Comparison of Oblique Lumbar Interbody Fusion Combined with Posterior Decompression (OLIF-PD) and Posterior Lumbar Interbody Fusion (PLIF) in the Treatment of Adjacent Segmental Disease(ASD)
Authors: Zhang Bin , Hu Yuan , Kong Qingquan , Feng Pin , Liu Junlin , Ma Junsong
Published: February 2023

Background: An unintended consequence following lumbar fusion is the development of adjacent segment disease (ASD). Oblique lumbar interbody fusion combined with posterior decompression (OLIF-PD) is another feasible option for ASD, and there is no literature report on this combined surgical strategy. Methods: A retrospective analysis was performed on 18 ASD patients requiring direct decompression in our hospital between September 2017 and January 2022. Among them, eight patients underwent OLIF-PD revision and ten underwent PLIF revision. There were no significant differences in the baseline data between the two groups. The clinical outcomes and complications were compared between the two groups. Results: The operation time, operative blood loss and postoperative hospital stay in the OLIF-PD group were significantly lower than those in the PLIF group. The VAS of low back pain in the OLIF-PD group was significantly better than that in the PLIF group during the postoperative follow-up. The ODI at the last follow-up in the OLIF-PD group and the PLIF group were significantly relieved compared with those before operation. The excellent and good rate of the modified MacNab standard at the last follow-up was 87.5% in the OLIF-PD group and 70% in the PLIF group. There was a statistically significant difference in the incidence of complications between the two groups. Conclusion: For ASD requiring direct decompression after posterior lumbar fusion, compared with traditional PLIF revision surgery, OLIF-PD has a similar clinical effect, but has a reduced operation time, blood loss, hospital stay and complications. OLIF-PD may be an alternative revision strategy for ASD.
Cystatin-c May Indicate Subclinical Renal Involvement, While Orosomucoid Is Associated with Fatigue in Patients with Long-COVID Syndrome
Authors: Zavori Laszlo , Molnar Tihamer , Varnai Reka , Kanizsai Andrea , Nagy Lajos , Vadkerti Bence , Szirmay Balazs , Schwarcz Attila , Csecsei Peter
Published: February 2023

Long-COVID syndrome is associated with high healthcare costs, but its pathophysiology is not yet fully understood. Inflammation, renal impairment or disturbance of the NO system emerge as potential pathogenetic factors. We aimed to investigate the relationship between symptoms of long-COVID syndrome and serum levels of cystatin-c (CYSC), orosomucoid (ORM), l-arginine, symmetric dimethylarginine (SDMA) and asymmetric dimethylarginine (ADMA). A total of 114 patients suffering from long-COVID syndrome were included in this observational cohort study. We found that serum CYSC was independently associated with the anti-spike immunoglobulin (S-Ig) serum level (OR: 5.377, 95% CI: 1.822–12.361; p = 0.02), while serum ORM (OR: 9.670 (95% CI: 1.34–9.93; p = 0.025) independently predicted fatigue in patients with long-COVID syndrome, both measured at baseline visit. Additionally, the serum CYSC concentrations measured at the baseline visit showed a positive correlation with the serum SDMA levels. The severity of abdominal and muscle pain indicated by patients at the baseline visit showed a negative correlation with the serum level of L-arginine. In summary, serum CYSC may indicate subclinical renal impairment, while serum ORM is associated with fatigue in long-COVID syndrome. The potential role of l-arginine in alleviating pain requires further studies.
Multi-Modal Stacking Ensemble for the Diagnosis of Cardiovascular Diseases
Authors: Yoon Taeyoung , Kang Daesung
Published: February 2023

Background: Cardiovascular diseases (CVDs) are a leading cause of death worldwide. Deep learning methods have been widely used in the field of medical image analysis and have shown promising results in the diagnosis of CVDs. Methods: Experiments were performed on 12-lead electrocardiogram (ECG) databases collected by Chapman University and Shaoxing People’s Hospital. The ECG signal of each lead was converted into a scalogram image and an ECG grayscale image and used to fine-tune the pretrained ResNet-50 model of each lead. The ResNet-50 model was used as a base learner for the stacking ensemble method. Logistic regression, support vector machine, random forest, and XGBoost were used as a meta learner by combining the predictions of the base learner. The study introduced a method called multi-modal stacking ensemble, which involves training a meta learner through a stacking ensemble that combines predictions from two modalities: scalogram images and ECG grayscale images. Results: The multi-modal stacking ensemble with a combination of ResNet-50 and logistic regression achieved an AUC of 0.995, an accuracy of 93.97%, a sensitivity of 0.940, a precision of 0.937, and an F1-score of 0.936, which are higher than those of LSTM, BiLSTM, individual base learners, simple averaging ensemble, and single-modal stacking ensemble methods. Conclusion: The proposed multi-modal stacking ensemble approach showed effectiveness for diagnosing CVDs.
Cyber-Physical Systems: Security Threats and Countermeasures
Authors: Hammoudeh Mohammad , Epiphaniou Gregory , Pinto Pedro
Published: February 2023

The recent proliferation of sensors and actuators, which is related to the Internet of Things (IoT), provide smart living to the general public in many data-critical areas, from homes and healthcare to power grids and transport [...]
Transforming Research on Recreational Ecosystem Services into Applications and Governance
Authors: Wang Zhifang , Jian Yuqing , Huang Zhibin , Qureshi Salman , Cheng Kexin , Bai Zhuhui , Zhang Qingwen
Published: February 2023

The science-practice gap has recently been discussed as a critical challenge restricting sustainable growth and development in all facets of our society, including explorations of Recreation Ecosystem Services (RES). To better explore how well the scientific study of RES and its application are connected, this paper aims to synthesize empirical evidence based on an in-depth and systematic literature review. We found that studies of RES have not effectively transformed into the decision-making and long-term planning of our cities. From 2005 to 2020, only 13% of studies referred to specific applications, and about 40% of papers mentioned no applications or practical implications for their research. However, RES research has many potential applications, which can be categorised into six main aspects. In terms of non-spatial improvement: Improved monetary benefits (40%), non-monetary benefits (30%); in terms of spatial improvement: space with high recreational potential or degradation (7%), the relation between supply and demand (7%); and Cross-service governance (16%). After combining the results of various studies, we developed a framework starting from applicable problems and their solutions, which can incorporate the outcomes of RES research while systematically narrowing down the research questions and methods. The framework offers a starting point for further research that can modify and improve in bridging science-practice gaps in RES studies.
Environmental Design for Urban Cooling, Access, and Safety: A Novel Approach to Auditing Outdoor Areas in Residential Aged Care Facilities
Authors: Boulton Chris , Baldwin Claudia , Matthews Tony , Tavares Silvia
Published: February 2023

Strategies and guidelines for best practice environmental design typically have a singular focus and intended outcome, for example, green infrastructure management for urban cooling in a hotter climate. However, when applied to specific situations such as aged care, matters such as accessibility, wayfinding, and safety are also critical. Combining various audit tools offer multiple benefits to meet a variety of needs for thermal comfort, health, and well-being, as well as cost-effectiveness. In the absence of such a tool, using a place-based analysis, we developed a novel audit tool for external settings of residential aged care facilities (ACFs) incorporating urban cooling, Crime Prevention Through Environmental Design (CPTED), and universal design criteria. To determine how ACFs perform in the face of increased levels of urban heat required evaluation of additional urban cooling measures. The Audit Tool was developed and tested in collaboration with ACFs across sub-tropical and tropical areas of Australia, varying in climate, scale, and urban density. Quality of life for residents, visitors, and staff of ACFs can be supported by the provision of green infrastructure to improve the thermal comfort of outdoor settings and, if located appropriately, reduce the need for an increase in internal air-conditioning. The aim of this article is to propose a user-friendly Hybrid Environmental Design Audit Tool (HEDAT) to support facility managers, planners, and design consultants to inform the prioritization and targeting of interventions and monitoring of implementation and outcomes.
A Retrospective Single-Arm Cohort Study in a Single Center of Radiofrequency Ablation in Treatment of Chronic Radiation Proctitis
Authors: Tang Chien-En , Cheng Kung-Chuan , Wu Kuen-Lin , Chen Hong-Hwa , Lee Ko-Chao
Published: February 2023

Background: Chronic radiation proctitis (CRP) may develop in patients within months to years after undergoing pelvic radiotherapy. Numerous treatment modalities are available to achieve hemostasis in CRP, but the optimal treatment remains controversial. We report our clinical experience and long-term outcomes using radiofrequency ablation (RFA) in patients with CRP. Methods: We retrospectively reviewed patients who underwent RFA for CRP at Kaohsiung Chang Gung Memorial Hospital between October 2015 and March 2021. The patient characteristics, endoscopic findings, and clinical outcomes were collected and analyzed. Results: 35 total patients were enrolled in the study. The mean age was 70.5 ± 12.4 years. All patients sustained repeated rectal bleeding before RFA, and 15 of 35 patients needed blood transfusion. Bleeding cessation was achieved in all patients. Mean follow-up time was 18.6 months (ranging from 2 to 52 months). The hemoglobin (Hb) levels at 6 months after RFA revealed significant improvement from 11.0 ± 2.3 to 11.8 ± 1.9 g/dL (p = 0.048). The rectal telangiectasia density (RTD) scores also showed significant improvement from 2.96 ± 0.2 to 0.85 ± 0.7 (p < 0.0001). In conclusion, RFA treatment is safe and effective in controlling rectal bleeding in CRP without serious complications and can be considered as a first-line or alternative endoscopic treatment for patients with CRP.
A Preclinical Systematic Review and Meta-Analysis of Behavior Testing in Mice Models of Ischemic Stroke
Authors: Boboc Ianis Kevyn Stefan , Rotaru-Zavaleanu Alexandra Daniela , Calina Daniela , Albu Carmen Valeria , Catalin Bogdan , Turcu-Stiolica Adina
Published: February 2023

Stroke remains one of the most important causes of death and disability. Preclinical research is a powerful tool for understanding the molecular and cellular response to stroke. However, a lack of standardization in animal evaluation does not always ensure reproducible results. In the present study, we wanted to identify the best strategy for evaluating animal behavior post-experimental stroke. As such, a meta-analysis was made, evaluating behavioral tests done on male C57BL/6 mice subjected to stroke or sham surgery. Overall, fifty-six studies were included. Our results suggest that different types of tests should be used depending on the post-stroke period one needs to analyze. In the hyper-acute, post-stroke period, the best quantifier will be animal examination scoring, as it is a fast and inexpensive way to identify differences between groups. When evaluating stoke mice in the acute phase, a mix of animal examination and motor tests that focus on movement asymmetry (foot-fault and cylinder testing) seem to have the best chance of picking up differences between groups. Complex tasks (the rotarod test and Morris water maze) should be used within the chronic phase to evaluate differences between the late-subacute and chronic phases.
Effects of E’Jiao on Skeletal Mineralisation, Osteocyte and WNT Signalling Inhibitors in Ovariectomised Rats
Authors: Chin Kok-Yong , Ng Ben Nett , Rostam Muhd Khairik Imran , Muhammad Fadzil Nur Farah Dhaniyah , Raman Vaishnavi , Mohamed Yunus Farzana , Mark-Lee Wun Fui , Chong Yan Yi , Qian Jing , Zhang Yan , Qu Haibin , Syed Hashim Syed Alhafiz , Ekeuku Sophia Ogechi
Published: February 2023

E’Jiao is a traditional Chinese medicine derived from donkey skin. E’Jiao is reported to suppress elevated bone remodelling in ovariectomised rats but its mechanism of action is not known. To bridge this research gap, the current study aims to investigate the effects of E’Jiao on skeletal mineralisation, osteocyte and WNT signalling inhibitors in ovariectomised rats. Female Sprague–Dawley rats (3 months old) were ovariectomised and supplemented with E’Jiao at 0.26 g/kg, 0.53 g/kg and 1.06 g/kg, or 1% calcium carbonate (w/v) in drinking water. The rats were euthanised after two months of supplementation and their bones were collected for Fourier-transform infrared spectroscopy, histomorphometry and protein analysis. Neither ovariectomy nor treatment affected the skeletal mineral/matrix ratio, osteocyte number, empty lacunar number, and Dickkopf-1 and sclerostin protein levels (p > 0.05). Rats treated with calcium carbonate had a higher Dickkopf-1 level than baseline (p = 0.002) and E’Jiao at 0.53 g/kg (p = 0.002). In conclusion, E’Jiao has no significant effect on skeletal mineralisation, osteocyte and WNT signalling inhibitors in ovariectomised rats. The skeletal effect of E’Jiao might not be mediated through osteocytes.
In Situ Gel with Silver Nanoparticles Prepared Using Agrimonia eupatoria L. Shows Antibacterial Activity
Authors: Balážová Ľudmila , Wolaschka Tomáš , Rohaľová Simona , Daneu Nina , Stahorský Martin , Salayová Aneta , Tkáčiková Ľudmila , Eftimová Jarmila
Published: February 2023

Silver nanoparticles (Ag NPs) with antibacterial activity can be prepared in different ways. In our case, we used ecological green synthesis with Agrimonia eupatoria L. The plant extract was used with Ag NPs for the first time to prepare termosensitive in situ gels (ISGs). Such gels are used to heal human or animal skin and mucous membranes, as they can change from a liquid to solid state after application. Ag NPs were characterized with various techniques (FTIR, TEM, size distribution, zeta potential) and their antibacterial activity was tested against Staphylococcus aureus and Escherichia coli. In accordance with the TEM data, we prepared monodispersed spherical Ag NPs with an average size of about 20 nm. Organic active compounds from Agrimonia eupatoria L. were found on their surfaces using FTIR spectroscopy. Surprisingly, only the in situ gel with Ag NPs showed antibacterial activity against Escherichia coli, while Ag NPs alone did not. Ag NPs prepared via green synthesis using plants with medicinal properties and incorporated into ISGs have great potential for wound healing due to the antibacterial activity of Ag NPs and the dermatological activity of organic substances from plants.
Designing a Novel Monitoring Approach for the Effects of Space Travel on Astronauts’ Health
Authors: Sakharkar Anurag , Yang Jian
Published: February 2023

Space exploration and extraterrestrial civilization have fascinated humankind since the earliest days of human history. It was only in the last century that humankind finally began taking significant steps towards these goals by sending astronauts into space, landing on the moon, and building the International Space Station. However, space voyage is very challenging and dangerous, and astronauts are under constant space radiation and microgravity. It has been shown that astronauts are at a high risk of developing a broad range of diseases/disorders. Thus, it is critical to develop a rapid and effective assay to monitor astronauts’ health in space. In this study, gene expression and correlation patterns were analyzed for 10 astronauts (8 male and 2 female) using the publicly available microarray dataset E-GEOD-74708. We identified 218 differentially expressed genes between In-flight and Pre-flight and noticed that space travel decreased genome regulation and gene correlations across the entire genome, as well as individual signaling pathways. Furthermore, we systematically developed a shortlist of 32 genes that could be used to monitor astronauts’ health during space travel. Further studies, including microgravity experiments, are warranted to optimize and validate the proposed assay.
Proteomic Analysis of Ferrochelatase Interactome in Erythroid and Non-Erythroid Cells
Authors: Obi Chibuike David , Dailey Harry A. , Jami-Alahmadi Yasaman , Wohlschlegel James A. , Medlock Amy E.
Published: February 2023

Heme is an essential cofactor for multiple cellular processes in most organisms. In developing erythroid cells, the demand for heme synthesis is high, but is significantly lower in non-erythroid cells. While the biosynthesis of heme in metazoans is well understood, the tissue-specific regulation of the pathway is less explored. To better understand this, we analyzed the mitochondrial heme metabolon in erythroid and non-erythroid cell lines from the perspective of ferrochelatase (FECH), the terminal enzyme in the heme biosynthetic pathway. Affinity purification of FLAG-tagged-FECH, together with mass spectrometric analysis, was carried out to identify putative protein partners in human and murine cell lines. Proteins involved in the heme biosynthetic process and mitochondrial organization were identified as the core components of the FECH interactome. Interestingly, in non-erythroid cell lines, the FECH interactome is highly enriched with proteins associated with the tricarboxylic acid (TCA) cycle. Overall, our study shows that the mitochondrial heme metabolon in erythroid and non-erythroid cells has similarities and differences, and suggests new roles for the mitochondrial heme metabolon and heme in regulating metabolic flux and key cellular processes.
Molecular Dynamics Simulation of the Complex of PDE5 and Evodiamine
Authors: Kobayashi Ayame , Nakajima Motokuni , Noguchi Yoh , Morikawa Ryota , Matsuo Yukiko , Takasu Masako
Published: February 2023

Alzheimer’s disease is an irreversible neurological disorder for which there are no effective small molecule therapeutics. A phosphodiesterase 5 (PDE5) inhibitor is a candidate medicine for the treatment of Alzheimer’s disease. Rutaecarpine, an indole alkaloid found in Euodiae Fructus, has inhibitory activity for PDE5. Euodiae Fructus contains more evodiamine than rutaecarpine. Therefore, we performed molecular dynamics simulations of the complex of PDE5 and evodiamine. The results showed that the PDE5 and (−)-evodiamine complexes were placed inside the reaction center compared to the case of PDE5 and (+)-evodiamine complex. The binding of (−)-evodiamine to PDE5 increased the root-mean-square deviation and radius of gyration of PDE5. In the PDE5 with (−)-evodiamine complex, the value of the root-mean-square fluctuation of the M-loop, which is thought to be important for activity, increased. This result suggests that (−)-evodiamine may have inhibitory activity.
3D Exoscopes in Experimental Microanastomosis: A Comparison of Different Systems
Authors: Hafez Ahmad , Haeren Roel , Huhtakangas Justiina , Nurminen Ville , Niemelä Mika , Lehecka Martin
Published: February 2023

Background: In recent years, three-dimensional exoscopes have been increasingly applied in neurosurgery. Multiple exoscopic systems are available, all offering specific features. In this study, we assessed practical and visualization performance of four different exoscopic systems in a highly challenging microsurgical procedure, and evaluated whether these affected the quality of work. Methods: We included four different exoscopes: Olympus ORBEYE, Zeiss KINEVO, Storz VITOM, and Aesculap AEOS. With each exoscope, ten experimental bypass procedures were carried out on chicken wing vessels at a depth of 3 cm. We evaluated the quality of the anastomoses, the practical considerations for the setup of the exoscopic systems, and the visualization quality by tracking the number of unnecessary movements. Results: All included exoscopes enabled us to perform the bypass procedures with mostly adequate or excellent results. Surgically, the most pronounced difference between the exoscopes was the duration of the procedure, which was mainly due to the number of unnecessary movements. Practically, the exoscopes differ highly which is important when considering which exoscope to apply. Conclusions: This is the first study comparing different exoscope systems while performing the same challenging microsurgical procedure. We found major practical differences between the exoscopes that determine the suitability of an exoscope based on the demands and conditions of the surgical procedure. Therefore, preprocedural practical training with the exoscope is required.
Sex-Determined Alteration of Frontal Electroencephalographic (EEG) Activity in Social Presence
Authors: Soiné Anna , Walla Peter
Published: February 2023

This study represents a follow-up event-related potential (ERP) analysis of a prior investigation. The previous results showed that participants had most negative-tending ERPs in the mid-frontal brain region during exposure to neutral emotion pictures (compared to negative and positive pictures) while being accompanied by a significant other person (social presence condition). The present analysis aimed at investigating potential sex differences related to this phenomenon. Female and male participants’ brain activity data from the previous study were analyzed separately for one representative mid-frontal electrode location selected on the basis of having the highest significance level. As a result, only female participants showed significantly more negative-tending potentials in response to neutral pictures, compared to both other emotion categories (positive and negative) in the social presence condition. This was not found in male participants. The respective ERP effect was most dominant at 838 ms post stimulus onset, which is slightly later than the effect found in the prior study. However, this result is interpreted as evidence that the general effect from the prior study can be understood as a largely female phenomenon. In line with the prior study, the present results are interpreted as a predominantly female activation in the mid-frontal brain region in response to neutral picture stimuli while being accompanied by a significant other person (social presence condition). Although only speculative, this would align with previous studies demonstrating sex-related hormonal and structural differences in the anterior cingulate cortex (ACC). In general, ACC activation has been associated with an integrative weighting function in ambiguous social settings, which makes sense given the ambiguous nature of neutral pictures in combination with a social presence condition.
Prevalence of Serum Antibody Titers against Core Vaccine Antigens in Italian Dogs
Authors: Dall’Ara Paola , Lauzi Stefania , Zambarbieri Jari , Servida Francesco , Barbieri Laura , Rosenthal Roberto , Turin Lauretta , Scarparo Elena , Filipe Joel
Published: February 2023

Canine vaccination is the main tool for preventing dangerous and widespread diseases. The strongly recommended (core) dog vaccines are against Canine Parvovirus type 2 (CPV-2), Canine Distemper Virus (CDV), and Canine Adenovirus (CAdV-1), but vaccination protocols should be tailored to dog lifestyles. Vaccination guidelines suggest vaccinating adult dogs no more frequently than every 3 years using modified live (attenuated) vaccines (MLV), thus obtaining a long-lasting (sometimes throughout life) specific protection in many but not all animals. The aim of this study was to determine the actual levels of seroprotection against CPV-2, CDV and CAdV-1 in a cohort of Italian dogs by using the in-practice test VacciCheck. A total of 1,027 dogs (951 vaccinated and 76 unvaccinated) were analyzed for Protective Antibody Titers (PATs) against CPV-2, CDV, and CAdV-1. Differences related to sex, age, breed size, health status, and time elapsed since last vaccination were evaluated. Half of the entire canine cohort (50.6%) had PATs for all three viruses (68.5% considering only vaccinated dogs). In particular, 90.8% of dogs were protected against CPV-2, 68.6% against CDV, and 79.8% against CAdV-1. Most dogs remained protected for 3 years after vaccination or longer. Revaccination on a 3-year basis can then be recommended for core MLV vaccines without altering individual’s seroprotection or even herd immunity.
Liver Transplantation and dd-cfDNA: A Small Solution for a Big Problem
Authors: Avramidou Eleni , Vasileiadou Stella , Antoniadis Nikolaos , Katsanos Georgios , Kofinas Athanasios , Karakasi Konstantina-Eleni , Tsoulfas Georgios
Published: February 2023

Dd-cfDNA is a novel biomarker with many diagnostic applications in various areas of medicine. In this review of the literature, we investigate its role in the diagnosis of many complications that occur in liver transplantations. In our review, we retrieved data from the medical databases PubMed and Scopus. In our bibliography, many areas concerning the contributions of dd-cfDNA to the field of liver transplantation, such as in the diagnosis of complications that include signsof rejection or graft injury, are mentioned. Dd-cfDNA, which are correlated with other biomarkers such as liver enzymes, can have a high diagnostic value. Measurements of Dd-cfDNA also depend on the graft’s size and origin; therefore, these data should be taken into account for the estimation and explanation of dd-cfDNA values. Despite the utility of this novel diagnostic technique, it comes with some limitations and applicational exclusions, such as cases where there is a blood relation between the donor and recipient.
Role of Genetic and Epigenetic Modifications in the Progression of Hepatocellular Carcinoma in Chronic HCV Patients
Authors: Syyam Anum , Akbar Hira Raheem , Jilkova Zuzana Macek , Afzal Samia
Published: February 2023

Globally, hepatocellular carcinoma (HCC) is a significant cause of mortality and morbidity among chronically infected HCV patients. It is established that HCV is a primary risk factor for HCC progression. The treatment of HCV infection has been transformed by the introduction of DAAs with high rates of virological clearance. The reduction in cirrhosis-related consequences, particularly HCC, is the long-term objective of DAAs therapy for HCV. Although the risk of developing HCC is decreased in HCV patients who achieve a disease-sustaining virological response, these patients are nevertheless at risk, especially those with severe fibrosis and cirrhosis. Previous studies have shown that HCV induce several mechanisms of hepatocarcinogenesis in the host’s hepatic micro- and macro-environment, which leads to HCC progression. In an HCV-altered environment, compensatory liver regeneration favors chromosomal instability and irreversible alterations, which encourage hepatocyte neoplastic transformation and the development of malignant clones. These mechanisms involve a series of genetic and epigenetic modifications including host genetic factors, dysregulation of several signaling pathways, histone, and DNA modifications including methylation and acetylation. This review highlights the genetic and epigenetic factors that lead to the development of HCC in chronic HCV-infected individuals and can be targeted for earlier HCC diagnosis and prevention.
Digital Image Correlation for Measuring Full-Field Residual Stresses in Wire and Arc Additive Manufactured Components
Authors: Boruah Dibakor , Dewagtere Nele , Ahmad Bilal , Nunes Rafael , Tacq Jeroen , Zhang Xiang , Guo Hua , Verlinde Wim , De Waele Wim
Published: February 2023

This study aims to demonstrate the capability of the digital image correlation (DIC) technique for evaluating full-field residual stresses in wire and arc additive manufactured (WAAM) components. Investigations were carried out on WAAM steel parts (wall deposited on a substrate) with two different wall heights: 24 mm and 48 mm. Mild steel solid wire AWS ER70S-6 was used to print WAAM walls on substrates that were rigidly clamped to H-profiles. DIC was used to monitor the bending deformation of WAAM parts during unclamping from the H-profiles, and residual stresses were calculated from the strain field captured during unclamping. Residual stresses determined from the proposed DIC-based method were verified with an analytical model and validated by the results from established residual stress measurement techniques, i.e., the contour method and X-ray diffraction.
Gradient Microstructure and Texture Formation in a Metastable Austenitic Stainless Steel during Cold Rotary Swaging
Authors: Panov Dmitrii , Kudryavtsev Egor , Naumov Stanislav , Klimenko Denis , Chernichenko Ruslan , Mirontsov Vladimir , Stepanov Nikita , Zherebtsov Sergey , Salishchev Gennady , Pertcev Alexey
Published: February 2023

The paper aimed to study the evolution of the microstructure and texture gradient of a 321-type metastable austenitic stainless steel during cold rotary swaging. Cold rotary swaging was carried out with a reduction of up to 90% at ambient temperature. Pronounced gradients of the α’-martensite volume fraction, the axial texture of austenite (⟨111⟩ and ⟨001⟩) and α’-martensite (⟨101⟩), and non-uniform microhardness distribution along the rod diameter were obtained after a reduction of 80–90%. According to the finite element analysis, moderate tensile stresses were attained in the center, whereas high compressive stresses operated at the edge. Due to water cooling of the rod surface and heating of the rod center during processing, a temperature gradient was also derived. Features of strain-induced martensitic transformation, microstructure and texture evolution, and non-uniform hardening during cold rotary swaging were discussed.
Numerical Simulation for Hydrogen-Assisted Cracking: An Explicit Phase-Field Formulation
Authors: Wang Di , Ma Fangping , Chen Hao
Published: February 2023

Hydrogen-assisted cracking is one of the most dominant failure modes in metal hydrogen-facing materials. Therefore, the hydrogen-assisted cracking mechanism has been a hot topic for a long time. To date, there is very little published research on numerical methods to describe hydrogen-assisted cracking. This paper presents a new method for the description of hydrogen embrittlement crack growth: an explicit phase-field formulation, which is based on the phase-field description of cracks, Fick’s mass diffusion law, and the relationship between hydrogen content and fracture surface energy. A novel computational framework is then developed using the self-developed FEM software DYNA-WD. We numerically calculate several typical conditions in the 3-D coordinates to validate the effectiveness of the proposed computational framework. Specifically, we discuss (i) the failure of a square plate in a hydrogenous environment, (ii) the CT specimen failed with the inner hydrogen, (iii) the plate/failed with the corrosives, and (iv) the failure of the disk test. Finally, the relationship between Mises stress, the concentration of hydrogen, the thickness of the disc, and the loading rate is investigated.
Characterization of Magnesium and Zinc Forms of Sodalite Coatings on Ti6Al4V ELI for Potential Application in the Release of Drugs for Osteoporosis
Authors: Sandomierski Mariusz , Stachowicz Wiktoria , Patalas Adam , Grochalski Karol , Graboń Wiesław , Voelkel Adam
Published: February 2023

Osteoporosis is the most common metabolic disease of the skeletal system and is characterized by impaired bone strength. This translates into an increased risk of low-energy fractures, which means fractures caused by disproportionate force. This disease is quite insidious, its presence is usually detected only at an advanced stage, where treatment with pharmaceuticals does not produce sufficient results. It is obligatory to replace the weakened bone with an implant. For this reason, it is necessary to look at the possibilities of surface modification used in tissue engineering, which, in combination with the drugs for osteoporosis, i.e., bisphosphonates, may constitute a new and effective method for preventing the deterioration of the osteoporotic state. To achieve this purpose, titanium implants coated with magnesium or zinc zeolite were prepared. Both the sorption and release profiles differed depending on the type of ion in the zeolite structure. The successful release of risedronate from the materials at a low level was proven. It can be concluded that the proposed solution will allow the preparation of endoprostheses for patients with bone diseases such as osteoporosis.
(Magneto)Transport Properties of (TiZrNbNi)1−xCux and (TiZrNbCu)1−xCox Complex Amorphous Alloys
Authors: Kuveždić Marko , Tafra Emil , Figueroa Ignacio A. , Basletić Mario
Published: February 2023

We present a systematic study of electrical resistivity, superconductive transitions and the Hall effect for three systems of compositionally complex amorphous alloys of early (TE) and late (TL) transition metals: (TiZrNbNi)1−xCux and (TiZrNbCu)1−xCox in a broad composition range of 0<x<0.5 as well as Ti0.30Zr0.15Nb0.15Cu0.2Ni0.2, Ti0.15Zr0.30Nb0.15Cu0.2Ni0.2 and Ti0.15Zr0.15Nb0.30Cu0.2Ni0.2. All samples showed high resistivity at room temperature, 140–240 μΩ cm, and the superconducting transition temperatures decreased with increasing late transition metal content, similar to binary amorphous and crystalline high-entropy TE-TL alloys. The Hall coefficient RH was temperature-independent and positive for all samples (except for (TiZrNbCu)0.57Co0.43), in good agreement with binary TE-TL alloys. Finally, for the temperature dependence of resistivity, as far as the authors are aware, we present a new model with two conduction channels, one of them being variable range hopping, such as the parallel conduction mode in the temperature range 20–200 K, with the exponent p=1/2. We examine this in the context of variable range hopping in granular metals.