bluuebunny/crossref_metadata_2025 huggingface dataset:
Identification of Quantitative Trait Loci for Resistance to Southern Leaf Blight and Days to Anthesis in a Maize Recombinant Inbred Line Population
Authors: Balint-Kurti P. J. , Krakowsky M. D. , Jines M. P. , Robertson L. A. , Molnár T. L. , Goodman M. M. , Holland J. B.
Published: May 2007

A recombinant inbred line population derived from a cross between the maize lines NC300 (resistant) and B104 (susceptible) was evaluated for resistance to southern leaf blight (SLB) disease caused by Cochliobolus heterostrophus race O and for days to anthesis in four environments (Clayton, NC, and Tifton, GA, in both 2004 and 2005). Entry mean and average genetic correlations between disease ratings in different environments were high (0.78 to 0.89 and 0.9, respectively) and the overall entry mean heritability for SLB resistance was 0.89. When weighted mean disease ratings were fitted to a model using multiple interval mapping, seven potential quantitative trait loci (QTL) were identified, the two strongest being on chromosomes 3 (bin 3.04) and 9 (bin 9.03–9.04). These QTL explained a combined 80% of the phenotypic variation for SLB resistance. Some time-point-specific SLB resistance QTL were also identified. There was no significant correlation between disease resistance and days to anthesis. Six putative QTL for time to anthesis were identified, none of which coincided with any SLB resistance QTL.
Molecular Characterization of Fusarium oxysporum and Fusarium commune Isolates from a Conifer Nursery
Authors: Stewart Jane E. , Kim Mee-Sook , James Robert L. , Dumroese R. Kasten , Klopfenstein Ned B.
Published: May 2007

Fusarium species can cause severe root disease and damping-off in conifer nurseries. Fusarium inoculum is commonly found in most container and bareroot nurseries on healthy and diseased seedlings, in nursery soils, and on conifer seeds. Isolates of Fusarium spp. can differ in virulence; however, virulence and colony morphology are not correlated. Forty-one isolates of Fusarium spp., morphologically indistinguishable from F. oxysporum, were collected from nursery samples (soils, healthy seedlings, and diseased seedlings). These isolates were characterized by amplified fragment length polymorphism (AFLP) and DNA sequencing of nuclear rDNA (internal transcribed spacer including 5.8S rDNA), mitochon-drial rDNA (small subunit [mtSSU]), and nuclear translation elongation factor 1-alpha. Each isolate had a unique AFLP phenotype. Out of 121 loci, 111 (92%) were polymorphic; 30 alleles were unique to only highly virulent isolates and 33 alleles were unique to only isolates nonpathogenic on conifers. Maximum parsimony and Bayesian analyses of DNA sequences from all three regions and the combined data set showed that all highly virulent isolates clearly separated into a common clade that contained F. commune, which was recently distinguished from its sister taxon, F. oxysporum. Interestingly, all but one of the nonpathogenic isolates grouped into a common clade and were genetically similar to F. oxysporum. The AFLP cladograms had similar topologies when compared with the DNA-based phylograms. Although all tested isolates were morphologically indistinguishable from F. oxysporum based on currently available monographs, some morphological traits can be plastic and unreliable for identification of Fusarium spp. We consider the highly virulent isolates to be F. commune based on strong genetic evidence. To our knowledge, this is the first reported evidence that shows F. commune is a cause of Fusarium disease (root rot and dampingoff) on Douglas-fir seedlings. Furthermore, several AFLP genetic markers and mtSSU sequences offer potential for development of molecular markers that could be used to detect and distinguish isolates of F. oxysporum nonpathogenic to conifers and highly virulent isolates of F. commune in forest nurseries.
Biological and Application-Oriented Factors Influencing Plant Disease Suppression by Biological Control: A Meta-Analytical Review
Authors: Ojiambo P. S. , Scherm H.
Published: May 2007

Studies to evaluate the effectiveness of biological control in suppressing plant disease often report inconsistent results, highlighting the need to identify general factors that influence the success or failure of biological control in plant pathology. We conducted a quantitative synthesis of previously published research by applying meta-analysis to determine the overall effectiveness of biocontrol in relation to biological and application-oriented factors. For each of 149 entries (antagonist-disease combinations) from 53 reports published in Biological & Cultural Tests between 2000 and 2005, an effect size was calculated as the difference in disease intensity expressed in standard deviation units between the biocontrol treatment and its corresponding untreated control. Effect sizes ranged from -1.15 (i.e., disease strongly enhanced by application of the biocontrol agent) to 4.83 (strong disease suppression by the antagonist) with an overall weighted mean of 0.62, indicating moderate effectiveness on average. There were no significant (P >0.05) differences in effect sizes between entries from studies carried out in the greenhouse versus the field, between those involving soilborne versus aerial diseases, or among those carried out in conditions of low, medium, or high disease pressure (expressed relative to the disease intensity in the untreated control). However, effect sizes were greater on annual than on perennial crops, regardless of whether the analysis was carried out for all entries (P = 0.0268) or for those involving only soilborne diseases (P = 0.0343). Effect sizes were not significantly different for entries utilizing fungal versus bacterial biocontrol agents or for those targeting fungal versus bacterial pathogens. However, entries that used r-selected biological control agents (i.e., those having short generation times and producing large numbers of short-lived offspring) were more effective than those that applied antagonists that were not r-selected (P = 0.0312). Interestingly, effect sizes for entries that used Bacillus spp. as biological control agents were lower than for those that applied other antagonists (P = 0.0046 for all entries and P = 0.0114 for soilborne diseases). When only aerial diseases were considered, mean effect size was greater for entries that received one or two sprays than for those that received more than eight sprays of the biocontrol agent (P = 0.0002). This counterintuitive result may indicate that investigators often attempt unsuccessfully to compensate for anticipated poor performance in antagonist-disease combinations by making more applications.
Influence of Iron on Cylindrocarpon Root Rot Development on Ginseng
Authors: Rahman Mahfuzur , Punja Zamir K.
Published: May 2007

Cylindrocarpon root rot, caused by Cylindrocarpon destructans, is an important disease on ginseng (Panax quinquefolius) in Canada. We studied the effects of iron (Fe) on disease severity and pathogen growth. When Hoagland's solution was amended with Fe at 56 and 112 μg/ml compared with 0 μg/ml, disease initiation and final severity on hydroponically maintained ginseng roots was significantly (P<0.0001) enhanced. Under field conditions, wounding of roots with a fine needle followed by application of 0.05% FeNaEDTA to the rhizosphere of treated plants significantly enhanced Cylindrocarpon root rot in 2003 and 2004 compared with unwounded roots with Fe or wounded roots without Fe. Foliar applications of Fe (as FeNaEDTA) to ginseng plants three times during the 2002 and 2003 growing seasons significantly increased Fe levels in root tissues. These roots developed larger lesions following inoculation with C. destructans in vitro. When radioactive Fe (59Fe) was applied to the foliage of ginseng plants, it was detected in the secondary phloem and in cortical and epidermal tissues within 1 week. Artificially wounded areas on the roots accumulated more59Fe than healthy areas. Diseased tissue also had threefold higher levels of phenolic compounds and Fe compared with adjoining healthy tissues. High-performance liquid chromatography analysis revealed enhanced levels of protocatechuic acid, chlorogenic acid, caffeic acid, ferulic acid, cinnamic acid, phloridizin, and quercetin. Phenolic compounds produced in diseased and wounded tissues sequestered Fe in vitro. The effects of Fe on mycelial growth, conidial germ tube length, and secondary branching of germ tubes of C. destructans were examined in vitro. When grown on Chrome-azurol S medium, Fe also was sequestered by C. destructans through siderophore production, which was visualized as a clearing pigmented zone at the margin of colonies. Mycelial dry weight was significantly increased in glucose/ yeast broth containing Fe at 56 or 112 μg/ml. Conidial germ tube length and secondary branching of hyphae also were enhanced after 8 and 16 h by Fe. Colony growth of C. destructans was not enhanced by Fe, but significantly greater spore production was observed with Fe at 56 and 112 μg/ml compared with no Fe in the medium. Although these levels of Fe had no effect on fungal pectinase enzyme activity, polyphenoloxidase (PPO) activity was significantly (P <0.0001) enhanced. We conclude that Fe enhances Cylindrocarpon root rot through enhanced pathogen growth, sporulation, and PPO enzyme activity. Fe sequestered by phenolic compounds produced in wounded tissues can enhance Fe levels at the site of infection. The pathogen also has the ability to sequester Fe at these sites.
Use of Selenate-Resistant Strains as Markers for the Spread and Survival ofBotrytis cinereaUnder Greenhouse Conditions
Authors: Korolev N. , Katan T. , Elad Y.
Published: May 2007

Botrytis cinerea marked strains combining traits of fungicide resistance or sensitivity (carbendazim, iprodione) with resistance to selenate were created and assessed for use in studying the dispersal of B. cinerea and its survival inside plant tissue under greenhouse conditions. Marked strains differed in their ability to cause lesions and to disperse in the greenhouse. A strain that was the most aggressive in infecting plants was also the most successful in spreading across the greenhouse. Following 7 to 14 days of exposure to marked inoculum, about 90% of plants showed quiescent B. cinerea infection with no significant difference between hosts or seasons. However, in a warm season, most of the plants were infected with wild-type B. cinerea, whereas most of the winter-recovered B. cinerea strains were of the marked phenotype, showing the importance of local inoculum from within the glasshouse in winter. The air of the greenhouse contained the same population of marked B. cinerea in warm and in cold periods, whereas the total population was significantly higher in summer. In the warm season, mycelium of B. cinerea inside plant debris lost viability within 3 to 4 months, whereas it stayed viable for 4 months in the winter (December to March) and started to lose viability in April.
Synergistic Interaction Between Tomato chlorosis virus and Tomato spotted wilt virus Results in Breakdown of Resistance in Tomato
Authors: García-Cano Elena , Resende Renato O. , Fernández-Muñoz Rafael , Moriones Enrique
Published: May 2007

Multiple viral infections frequently are found in single plants of cultivated and wild hosts in nature, with unpredictable pathological consequences. Synergistic reactions were observed in mixed infections in tomato plants doubly infected with the positive-sense and phloem-limited single-stranded RNA (ssRNA) crinivirus Tomato chlorosis virus (ToCV) and the negative-sense ssRNA tospovirus Tomato spotted wilt virus (TSWV). Synergism in a tomato cultivar susceptible to both viruses resulted in a rapid death of plants. A pronounced enhancement of ToCV accumulation mediated by TSWV co-infection was observed with no evident egress of ToCV from phloem tissues. No consistent alteration of TSWV accumulation was detected. More remarkable was the synergism observed in tomato cultivars which carry the Sw-5 resistance gene, which are resistant to TSWV. Pre-infection with ToCV resulted in susceptibility to TSWV, whereas co-inoculations did not. This suggested that a threshold level or a time lapse is needed for ToCV to interfere or downregulate the defense response in the TSWV-resistant plants.
Virus Design, 1955-1962: Science Meets Art
Authors: Morgan Gregory J.
Published: May 2007

This paper traces the beginnings of structural virology in the mid-20th century, focusing especially on the synergy between models of virus structure and models within art, notably Buckminster Fuller's geodesic domes and Kenneth Snelson's tensegrity structures. As Donald Caspar and Aaron Klug sought to extend the Crick-Watson theory of spherical virus structure, they explored analogies between biology and architecture, eventually publishing the classic Caspar-Klug theory of virus structure in 1962.
Rapid and Sensitive Detection of Phytophthora sojae in Soil and Infected Soybeans by Species-Specific Polymerase Chain Reaction Assays
Authors: Wang Yuanchao , Zhang Wenli , Wang Ying , Zheng Xiaobo
Published: May 2007

Root and stem rot caused by Phytophthora sojae is one of the most destructive diseases of soybean (Glycine max) worldwide. P. sojae can survive as oospores in soil for many years. In order to develop a rapid and accurate method for the specific detection of P. sojae in soil, the internal transcribed spacer (ITS) regions of eight P. sojae isolates were amplified using polymerase chain reaction (PCR) with the universal primers DC6 and ITS4. The sequences of PCR products were aligned with published sequences of 50 other Phytophthora species, and a region specific to P. sojae was used to design the specific PCR primers, PS1 and PS2. More than 245 isolates representing 25 species of Phytophthora and at least 35 other species of pathogens were used to test the specificity of the primers. PCR amplification with PS primers resulted in the amplification of a product of approximately 330 bp, exclusively from isolates of P. sojae. Tests with P. sojae genomic DNA determined that the sensitivity of the PS primer set is approximately 1 fg. This PCR assay, combined with a simple soil screening method developed in this work, allowed the detection of P. sojae from soil within 6 h, with a detection sensitivity of two oospores in 20 g of soil. PCR with the PS primers could also be used to detect P. sojae from diseased soybean tissue and residues. Real-time fluorescent quantitative PCR assays were also developed to detect the pathogen directly in soil samples. The PS primer-based PCR assay provides a rapid and sensitive tool for the detection of P. sojae in soil and infected soybean tissue.
A Survey of Genetic Variation in Streptomyces Isolates Causing Potato Common Scab in the United States
Authors: Wanner Leslie A.
Published: May 2007

Common scab is a serious disease of potatoes and other root and tuber crops, affecting crop quality and market value. The disease is caused by gram positive soil bacteria in the genus Streptomyces. Disease incidence and severity vary in different locations and years; this is due in part to variation in the environment (weather) and genetic variation in potato cultivars. Little information is available on the contribution of genetic variation by the pathogen. To examine genetic diversity in different locations within the United States, streptomycetes were isolated from lesions on field-grown potatoes from six states. Isolates were classified into species based on sequence of variable regions in the 16s rRNA gene. The presence of genes associated with the recently described S. turgidiscabies pathogenicity island (PAI) was also determined. About half of the isolates belonged to S. scabies or S. europaeiscabiei based on 16s rDNA sequence, and had characteristic features of the PAI. They were found in all six states, and were pathogenic on potato and radish. The remaining isolates included pathogens and nonpathogens. They were varied in appearance, and represent several species, including one pathogenic species not previously reported. Some pathogenic isolates lacked one or more genes characteristic of the PAI, although all had genes for biosynthesis of the pathogenicity determinant thaxtomin. In this relatively small survey, regional differences in scab-causing streptomycetes were seen. This report furnishes tools and baseline data for population genetic study of scab-causing streptomycetes in the United States.
Characterization of Race-Specific Interactions Among Isolates ofVerticillium dahliaePathogenic on Lettuce
Authors: Vallad Gary E. , Qin Qing-Ming , Grube Rebecca , Hayes Ryan J. , Subbarao Krishna V.
Published: May 2007

Verticillium wilt, caused by Verticillium dahliae, poses a major threat to lettuce (Lactuca sativa) production in California. Incorporation of resistance into commercial lettuce cultivars offers the least expensive technique of sustaining production in infested areas. To test the breadth of the resistance identified in field experiments, a pair of susceptible (‘Salinas’ and ‘Sniper’) and resistant (‘La Brillante’ and ‘Little Gem’) lettuce cultivars were used as differentials and individually inoculated with 29 isolates of V. dahliae and two isolates of V. albo-atrum from several hosts, including lettuce, in replicated greenhouse experiments. The reactions of the four cultivars were determined based on the disease severity at maturity. None of the V. albo-atrum isolates or V. dahliae isolates from cruciferous hosts caused significant disease on lettuce. Both Salinas and Sniper were susceptible to many isolates of V. dahliae (21 of 23) from noncruciferous hosts, and the isolates varied in their overall virulence. However, of these, only three isolates caused significant disease on the resistant cvs. La Brillante and Little Gem. These three isolates also were distinct from the other V. dahliae isolates based on sequence data from the intergenic spacer (IGS) region of the nuclear ribosomal RNA gene, suggesting that they form a phylogenetically distinct subgroup that differs in virulence toward specific lettuce genotypes. Accordingly, isolates of V. dahliae virulent on all tested cultivars, including the resistant La Brillante and Little Gem, were designated as race 2, whereas those virulent only on the susceptible Salinas and Sniper were designated as race 1. Although a range of virulence among isolates has been described in other hosts, this is the first description of distinct virulence phenotypes in V. dahliae since a similar race structure was described in tomato in the 1960s.
Characterization of a γ-3 Proteobacteria Responsible for the Syndrome “Basses Richesses” of Sugar Beet Transmitted by Pentastiridius sp. (Hemiptera, Cixiidae)
Authors: Sémétey Olivier , Gatineau Frédéric , Bressan Alberto , Boudon-Padieu Elisabeth
Published: May 2007

The disease syndrome “basses richesses” (SBR) has affected sugar beet crops in Burgundy (France) since 1991. It mainly is associated with an uncultivable phloem-restricted bacterium-like organism (BLO) called SBR BLO. Transmission tests showed that field-collected Pentastiridius sp. (Hemiptera, Cixiidae) were able to transmit the SBR BLO to sugar beet. In the present work, sequences of a 1,507-bp 16S ribosomal (r)DNA fragment of SBR BLO were amplified from DNA extracts of SBR-affected field sugar beet plants, of field-collected Pentastiridius sp. plant-hoppers, and of Pentastiridiussp.-exposed sugar beet seedlings that expressed SBR symptoms. The sequences showed total identity, confirming the role of SBR BLO in the etiology of SBR and the vector role of Pentastiridius sp. Our surveys on SBR-affected sugar beet plants and Pentastiridius sp. planthoppers collected in different fields and different years suggest that a unique BLO was involved in SBR. Furthermore, comparison of 16S rDNA sequences permitted the identification of the SBR BLO as a new plant-pathogenic γ-3 proteobacteria different from ‘Candidatus Phlomobacter fragariae,’ another BLO responsible for marginal chlorosis disease of strawberry in France. Phylogenetic analysis revealed a close relationship between the SBR bacterium and several bacteria described as endosymbionts of hemipteran insects.
Molecular Marker Analysis of Soybean Plant Introductions with Resistance toPhytophthora sojae
Authors: Gordon S. G. , Kowitwanich K. , Pipatpongpinyo W. , St. Martin S. K. , Dorrance A. E.
Published: May 2007

Molecular analysis of sources of resistance to plant pathogens should expedite and confirm novel gene discovery and consequently the development of disease resistant cultivars. Recently, soybean plant introductions (PIs) were identified that contain putative novel Rps genes for resistance to Phytophthora sojae. The number of resistance genes that confer resistance to P. sojae isolates OH17 (1b,1d,2,3a,3b,3c,4,5,6,7) and OH25 (1a,1b,1c,1k,7) was then determined in several of the PIs. The objective of this study was to determine if the Rps genes present in these PIs were associated with eight described Rps loci that have been mapped on soybean molecular linkage groups F, G, J, and N. Nine F2:3soybean populations were genotyped with simple sequence repeat (SSR) markers linked to previously mapped Rps loci. The nine PI populations all had SSR markers associated (P < 0.01) with resistance to P. sojae isolate OH17 in the Rps1 region. Rps1c is a likely candidate in eight PIs but novel genes may also be possible, while novel genes may confer resistance in one PI to P. sojae isolate OHI7. Two or more Rps genes, including some that are potentially novel, confer resistance to P. sojae isolate OH25 in eight of the populations. However, based on the response to these two isolates, virulence already exists for at least some of the novel genes identified in this study.
Comparative Efficacy of Systemic Acquired Resistance-Inducing Compounds Against Rust Infection in Sunflower Plants
Authors: Amzalek Esther , Cohen Yigal
Published: May 2007

Four inducers of systemic acquired resistance (SAR) were examined for their efficacy in controlling rust infection caused by Puccinia helianthi in sunflower plants. Of the four compounds, DL-3-amino-n-butanoic acid (DL-β-aminobutyric acid [BABA]) was the most effective and sodium salicylate (NaSA) was the least effective in protecting against rust. In leaf disk assays, full protection was obtained with BABA at 25 μg/ml, benzodiathiazol-S-methyl ester (BTH) at 100 μg/ml, 2,6-di-chloroisonicotinic acid (INA) at 100 μg/ml, and NaSA at >200 μg/ml. L-2-amino-n-butanoic acid (AABA) was partially effective, whereas N-methyl-BABA and 4-aminobutnoic acid (GABA) were ineffective. The R-enantiomer of BABA, but not the S-enantiomer, was more effective than the racemic mixture. In intact plants, BABA applied as a foliar spray or a root dip, before or after (up to 48 h) inoculation, provided significant protection for 8 days. BTH, INA, and NaSA were less protective and more phytotoxic compared with BABA. BABA did not affect urediospore germination, germ tube growth, appressorial formation, or initial ingress of P. helianthi, but strongly suppressed mycelial colonization in the mesophyll and, consequently, pustule and urediospore formation. No accumulation of defense compounds (phenolics, lignin, or callose) was detected in BABA-treated inoculated or noninoculated plants. This is the first report on the activity of BABA against an obligate Basidomycete pathogen in planta.
Characterization of Early Leaf Spot Suppression by Strip Tillage in Peanut
Authors: Cantonwine E. G. , Culbreath A. K. , Stevenson K. L.
Published: May 2007

Epidemics of early leaf spot of peanut (Arachis hypogaea), caused by Cercospora arachidicola, are less severe in strip-tilled than conventionally tilled fields. Experiments were carried out to characterize the effect of strip tillage on early leaf spot epidemics and identify the primary target of suppression using a comparative epidemiology approach. Leaf spot intensity was assessed weekly as percent incidence or with the Florida 1-to-10 severity scale in peanut plots that were conventionally or strip tilled. The logistic model, fit to disease progress data, was used to estimate initial disease (y0) and epidemic rate (r) parameters. Environmental variables, inoculum abundance, and field host resistance were assessed independently. For experiments combined, estimated y0 was less in strip-tilled than conventionally tilled plots, and r was comparable. The epidemic was delayed in strip-tilled plots by an average of 5.7 and 11.7 days based on incidence and severity, respectively. Tillage did not consistently affect mean canopy temperature, relative humidity, or frequency of environmental records favorable for infection or spore dispersal. Host response to infection was not affected by tillage, but infections were detected earlier and at higher frequencies with noninoculated detached leaves from conventionally tilled plots. These data suggest that strip tillage delays early leaf spot epidemics due to fewer initial infections; most likely a consequence of less inoculum being dispersed to peanut leaves from overwintering stroma in the soil.
Genetic Structure of Populations of the Pinewood Nematode Bursaphelenchus xylophilus, the Pathogen of Pine Wilt Disease, Between and Within Pine Forests
Authors: Zhou Zhihua , Sakaue Daisuke , Wu Bingyun , Hogetsu Taizo
Published: May 2007

We analyzed the genetic structure of Bursaphelenchus xylophilus populations within individual trees (subpopulations) in three distant pine forests (Tanashi, Tsukuba, and Chiba in Japan) based on the polymorphism of four microsatellite (SSR) markers. Most of the nematodes from subpopulations in Tanashi showed the same genotype over 2 years, indicating that nematodes of that genotype dominated there for years. In contrast, 16 and 15 genotypes were identified in nematode populations from Tsukuba and Chiba, respectively. Despite the high genetic diversity within the Tsukuba and Chiba populations, extremely low genetic diversity was observed within the subpopulations. The genetic difference between the Tsukuba and Chiba populations was significantly smaller than that between Tanashi and either Tsukuba or Chiba. Observed heterozygosity was significantly less than expected based on Hardy-Weinberg equilibrium. These findings are best explained by a founder effect, geographic isolation between populations, explosive nematode multiplication from a small number within individual trees, and the Wahlund effect.
Contribution of Fimbrial and Afimbrial Adhesins of Xylella fastidiosa to Attachment to Surfaces and Virulence to Grape
Authors: Feil Helene , Feil William S. , Lindow Steven E.
Published: May 2007

The role of fimbrial and afimbrial adhesins of Xylella fastidiosa in biofilm formation was assessed by visualization of cell aggregates of mutant strains after incubation on glass surfaces. FimA- or FimF- fimbrial mutants adhered as solitary cells at a slightly lesser frequency to glass surfaces than the parental strain; however, cell aggregates were not formed, unlike the wild-type strain. Conversely, whereas the XadA- and HxfB- nonfimbrial mutants also exhibited a much lower frequency of adherence to glass surfaces than the wild-type strain, most of the cells retained on the surfaces were in cell aggregates of different sizes, much like that of the parental strain. Neither fimbrial or afimbrial mutants formed a mature biofilm on the sides of flasks of broth cultures, unlike the dense biofilm formed by the wild-type strain. Although FimA- and FimF- mutants did not form cell aggregates on glass surfaces when incubated as individual strains, aggregates of a FimA- or FimF- mutant were observed when co-incubated with either a XadA- mutant or HxfB- mutant, respectively. These results are consistent with a model in which the fimbrial adhesins FimA and FimF are involved preferentially in cell-to-cell aggregate formation whereas the afimbrial adhesions XadA and HxfB preferentially contribute to initial cell binding to surfaces, whereupon further cell aggregation can occur. In each of five separate experiments, FimA, FimF, XadA, and HxfB mutants of X. fastidiosa all were less virulent to grape than the corresponding wild-type strain. Fimbrial and afimbrial mutants might produce a reduced biofilm within vessels of grape and, hence, be deficient in various cell-density-dependent traits required for movement through the plant and, thus, virulence.
Characterization, Genetic Structure, and Pathogenicity of Rhizoctonia spp. Associated with Rice Sheath Diseases in India
Authors: Taheri Parissa , Gnanamanickam Sam , Höfte Monica
Published: May 2007

Isolates of Rhizoctonia spp. were obtained from rice in India during 2000-2003. Characterization by conventional techniques and polymerase chain reaction showed that from 110 isolates, 99 were R. solani and 11 were R. oryzae-sativae. Of 99 isolates identified as R. solani, 96 were AG1-IA, 1 was AG1-IB, and 2 were AG1-IC. Amplified fragment length polymorphism (AFLP) analyzes were used to determine genetic relationships in Rhizoctonia pathogen populations collected from different geographic regions. Cluster analysis based on the AFLP data separated isolates belonging to the three different intraspecific groups of R. solani AG1 and differentiated R. solani from R. oryzae-sativae. Analysis of molecular variance (AMOVA) revealed that geographic region was the dominant factor determining population structure of R. solani AG1-1A; host cultivar had no significant effect. Pathogenicity tests on Oryza sativa cv. Zenith revealed that isolates of R. solani AG1-1A and AG1-1B were more virulent than R. solani AG1-IC and R. oryzae-sativae isolates.
New Populations of Sclerotinia sclerotiorum from Lettuce in California and Peas and Lentils in Washington
Authors: Malvárez Gabriela , Carbone Ignazio , Grünwald Niklaus J. , Subbarao Krishnamurthy V. , Schafer Michelle , Kohn Linda M.
Published: May 2007

Four populations of Sclerotinia sclerotiorum in North America were inferred previously, based on analyses of both rapidly evolving markers (DNA fingerprint and mycelial compatiblity), and multilocus DNA sequence spanning the range between fast and slow evolution. Each population was defined as an interbreeding unit of conspecific individuals sharing a common recent ancestor and arising in a unique evolutionary event. The present study applies this standard to extend characterization of S. sclerotiorum populations to the Western United States. Isolates of S. sclerotiorum (N = 294) were determined to represent three genetically differentiated populations: California (CA, lettuce), Washington (WA, pea/lentil), and Ontario (ON, lettuce). CA was the most diverse population yet sampled in North America. Clonality was detected in ON and WA. No DNA fingerprints were common among the populations. The index of association (IA), based on fingerprint, was closer to zero (0) for CA than it was for the other populations. High diversity and lack of association of markers in California are consistent either with genetic exchange and recombination, or with large population size and high standing genetic variation. Intra- and interlocus conflict among three DNA sequence loci was consistent with recombination. The coalescent IGS genealogy confirmed subdivision and showed CA to be older than WA or ON. The Nearest Neighbor statistic on combined data confirmed subdivision among all present and previously defined populations. All isolates had both MAT1-1 and MAT1-2, consistent with uniform homothallism.
Primary Infection, Lesion Productivity, and Survival of Sporangia in the Grapevine Downy Mildew Pathogen Plasmopara viticola
Authors: Kennelly Megan M. , Gadoury David M. , Wilcox Wayne F. , Magarey Peter A. , Seem Robert C.
Published: May 2007

Several aspects of grapevine downy mildew epidemiology that are fundamental to model predictions were investigated. Simple rainfall-, temperature-, and phenology-based thresholds (rain > 2.5 mm; temperature > 11°C; and phenology > Eichorn and Lorenz [E&L] growth stage 12) were evaluated to forecast primary (oosporic) infection by Plasmopara viticola. The threshold was consistent across 15 years of historical data on the highly susceptible cv. Chancellor at one site, and successfully predicted the initial outbreak of downy mildew for 2 of 3 years at three additional sites. Field inoculations demonstrated that shoot tissue was susceptible to infection as early as E&L stage 5, suggesting that initial germination of oospores, rather than acquisition of host susceptibility, was probably the limiting factor in the initiation of disease outbreaks. We also found that oospores may continue to germinate and cause infections throughout the growing season, in contrast to the widely-held assumption that the supply of oospores is depleted shortly after bloom. Lesion productivity (sporangia/lesion) did not decline with age of a lesion in the absence of suitable weather to induce sporulation. However, the productivity of all lesions declined rapidly through repeated cycles of sporulation. Extremely high temperatures (i.e., one day reaching 42.8°C) had an eradicative effect under vineyard conditions, and permanently reduced sporulation from existing (but not incubating) lesions to trace levels, despite a later return to weather conducive to sporulation. In fair weather, most sporangia died sometime during the daylight period immediately following their production. However, over 50% of sporangia still released zoospores after 12 to 24 h of exposure to overcast conditions.
Relative Contribution of Seed-Transmitted Inoculum to Foliar Populations of Phaeosphaeria nodorum
Authors: Bennett Rebecca S. , Milgroom Michael G. , Sainudiin Raazesh , Cunfer Barry M. , Bergstrom Gary C.
Published: May 2007

A marked-isolate, release-recapture experiment was conducted to assess the relative contributions of seed-transmitted (released isolates) versus all other inocula to foliar and grain populations of Phaeosphaeria nodorum in winter wheat rotated with nonsusceptible crops in New York and Georgia, United States. Seed infected with two distinct groups of marked isolates of P. nodorum containing rare alleles (identified by amplified fragment length polymorphisms [AFLPs]) and balanced for mating type were planted in experimental field plots in two locations in each state. Recapture was done by isolating P. nodorum from leaves showing necrotic lesions at spring tillering and flowering stages, and mature grains from spikes showing glume blotch. Isolates from these samples were genotyped by AFLPs and categorized as released or nonreleased to infer sources of inoculum. Both infected seed and other sources of the pathogen contributed significant primary inocula to populations recovered from leaves and harvested grain. Seed-transmitted genotypes accounted for a total of 57% of all isolates recovered from inoculated plots, with a range of 15 to 90% of the populations of P. nodorum collected over the season in individual, inoculated plots at the four locations. Plants in the noninoculated control plots also became diseased and 95% or more of the isolates recovered from these plots were nonreleased genotypes. Although other potential sources of P. nodorum within and adjacent to experimental plots were not ruled out, nonreleased genotypes likely were derived from immigrant ascospores potentially from sources at a considerable distance from the plots. Our results suggest that, although reduction of seedborne inoculum of P. nodorum may delay foliar epidemics, this strategy by itself is unlikely to result in high levels of control in eastern North America because of the additional contribution from alternative sources of inoculum.
Genetic Diversity in Poplar Leaf Rust (Melampsora medusae f. sp. deltoidae) in the Zones of Host Sympatry and Allopatry
Authors: Bourassa M. , Bernier L. , Hamelin R. C.
Published: May 2007

Poplar leaf rust caused by Melampsora medusae f. sp. deltoidae is a widespread disease in North America, where epidemics occur within zones of sympatry and allopatry of telial hosts (Populus spp.) and aecial hosts (Larix spp.). To test the hypothesis that epidemics originate in the zone of sympatry where the rust can complete its life cycle, populations in sympatry and allopatry were analyzed with single-strand conformational polymorphism for codominant detection of alleles directly from uredinia. More alleles were detected in rust populations in the zone of host sympatry than in allopatry. Almost all alleles found in the zone of allopatry were a subset of the allelic diversity present in the zone of host sympatry. Distance analyses clustered populations according to geographic origin, but not sampling year or type of stand (plantation or natural stands). Large differences in allelic and genotypic frequency were observed between years in allopatry but not in sympatry, suggesting new colonizations in allopatric populations. Our results point to a dynamic and complex pattern of inoculum dissemination in polar leaf rust. The hypothesis most consistent with our results is that populations in sympatry represent a source of inoculum for epidemics, with some annual recolonization in allopatry, possibly via intermediate population jumps.
Physiological Aspects Related to Tolerance of Spring Wheat Cultivars to Septoria tritici Blotch
Authors: Zuckerman E. , Eshel A. , Eyal Z.
Published: May 2007

The susceptible wheat cultivar Miriam exhibited tolerance under severe infection of Septoria tritici blotch (STB). Nethouse and greenhouse trials confirmed former field results in which losses in grain weight of ‘Miriam’ wheat due to STB infection were significantly lower than those of the susceptible cultivar Barkai, under equivalent severity and the same disease progress curve. Several physiological mechanisms that may explain this tolerance of ‘Miriam’ wheat were studied. A comparison between protected and infected plants proved that carbohydrate reserves in the culms and other vegetative plant parts did not account for the lower losses in grain weight of ‘Miriam’. Each tiller was shown to be independent in its supply of carbohydrates to its grains, and no import from secondary tillers was observed. Differences in the ratio between grain weight and vegetative biomass could not explain the sustained grain filling of infected plants of ‘Miriam’. The daily balance of CO2exchange of the ears was negative, since carbon fixation by the spike in the light was more than counterbalanced by night time spike respiration. Radioisotope studies revealed that mature, infected ‘Miriam’ plants maintained as large a percentage of the carbohydrates fixed at the vegetative stage and early grain filling as healthy plants. On the other hand, under the same conditions, infected ‘Barkai’ plants lost a larger fraction of these carbohydrates. The rate of carbon fixation per unit of chlorophyll and per residual green leaf area of infected ‘Miriam’ was higher than in healthy plants. It is proposed that this enhancement of photosynthesis in residual green tissue of infected plants of the tolerant cultivar Miriam compensates for the loss of photosynthesizing tissue due to STB.
Sensitivity of Mycosphaerella fijiensis, Causal Agent of Black Sigatoka of Banana, to Propiconazole
Authors: Romero R. A. , Sutton T. B.
Published: May 2007

One hundred monoascosporic isolates of Mycosphaerella fijiensis were collected in February and November 1994 from each of two banana (Musa spp.) plantations in Costa Rica. Locations at San Pablo and Coopecariari had been sprayed with propiconazole for the past 7 years to control black Sigatoka. One hundred monoascosporic isolates from a third location, San Carlos, with no history of fungicide use, also were tested for sensitivity to propiconazole. Fifty percent effective concentration (EC50) values were calculated for individual isolates by regressing the relative inhibition of colony growth against the natural logarithm of the fungicide concentration. In the February sample, the mean EC50 values for San Pablo and Coopecariari populations were 0.06 and 0.05 μg a.i. ml-1, respectively, which were not statistically different (P = 0.05). The mean EC50 value of the population at San Carlos was 0.008 μg a.i. ml-1, which was significantly lower (P = 0.001) than the mean EC50 values obtained at San Pablo and Coopecariari. Frequency distributions of EC50 values of isolates from the three populations collected in February showed that 80% of isolates from San Pablo and Coopecariari had EC50 values greater than the highest EC50 value from San Carlos, indicating a significant shift in reduced sensitivity to propiconazole. Isolates collected in November 1994, after eight treatments of propiconazole at San Pablo and Coopecariari, showed a significant increase in mean EC50 values compared with the means observed in February. The high proportion of isolates with reduced sensitivity to propiconazole may account for the unsatisfactory control of black Sigatoka between 1992 and 1993 in the two banana plantations at San Pablo and Coopecariari.
Diversity of Hypoviruses and Other Double-Stranded RNAs in Cryphonectria parasitica in North America
Authors: Peever Tobin L. , Liu Yir-Chung , Milgroom Michael G.
Published: May 2007

Double-stranded (ds) RNAs in Cryphonectria parasitica were randomly sampled from nine subpopulations in North America using an antibody-based detection system for dsRNA. dsRNA was detected in 166 (28%) of a total of 595 C. parasitica isolates sampled by immunoblotting. Incidence of dsRNA infection within subpopulations ranged from 0% in samples from New Hampshire and Ontario to 100% in County Line, MI. Most of the dsRNAs sampled were approximately 9 to 13 kb in size. dsRNAs from 72 isolates analyzed by probing Northern blots with 32P-labeled dsRNAs were in one of three hybridization groups. One hybridization group was widespread throughout eastern North America, being found in New York, New Jersey, Maryland, West Virginia, Kentucky, and Michigan. These dsRNAs hybridized to dsRNA from the previously described C. parasitica isolate SR2 from Maryland and are referred to as SR2-type dsRNAs. The second hybridization group was found almost exclusively in Michigan. The Michigan dsRNAs cross-hybridized to Cryphonectria hypovirus 3-GH2 (CHV3-GH2) and are referred to as CHV3-type dsRNAs.One dsRNA sampled from Kentucky hybridized to CHV3-type dsRNAs from Michigan. This dsRNA was probably derived from a fungal isolate that had been intentionally released for biological control at this same site 10 years previously and had become established in Kentucky. The third hybridization group was found only in New Jersey. These dsRNAs were much smaller than all other dsRNAs (3 and 5 kb) and were found in all 11 isolates that were probed; two of these isolates also had SR2-type dsRNA in mixed infections. None of the North American dsRNAs hybridized to CHV1 from Europe, even though CHV1 has been released in numerous locations in eastern North America for biological control of chestnut blight. Similarly, no dsRNAs hybridized to CHV2-NB58, a hypovirus found previously in New Jersey. Mixed infections of SR2-type and CHV3-type dsRNAs were found in 13 of 15 isolates from Frankfort, MI, while another nearby subpopulation (County Line) was infected with only CHV3-type dsRNAs. The distribution of dsRNA hybridization groups in C. parasitica thus presents a mixed picture, since one hybridization group is widespread, whereas two others are primarily restricted to smaller geographic areas.
Biological Control of Sclerotium rolfsii and Verticillium dahliae by Talaromyces flavus Is Mediated by Different Mechanisms
Authors: Madi Lea , Katan Talma , Katan Jaacov , Henis Yigal
Published: May 2007

Ten wild-type strains and two benomyl-resistant mutants of Talaromyces flavus were examined for their ability to secrete the cell wall-degrading enzymes chitinase, β-1,3-glucanase, and cellulase, to parasitize sclerotia of Sclerotium rolfsii, to reduce bean stem rot caused by S. rolfsii, and to secrete antifungal substance(s) active against Verticillium dahliae. The benomyl-resistant mutant BenRTF1-R6 overproduced extracellular enzymes and exhibited enhanced antagonistic activity against S. rolfsii and V. dahliae compared to the wild-type strains and other mu tants. Correlation analyses between the extracellular enzymatic activities of different isolates of T. flavus and their ability to antagonize S. rolfsii indicated that mycoparasitism by T. flavus and biological control of S rolfsii were related to the chitinase activity of T. flavus. On the other hand, production of antifungal compounds and glucose-oxidase activity may play a role in antagonism of V. dahliae by retardation of germination and hyphal growth and melanization of newly formed microsclerotia.
Control of Postharvest Pathogens and Colonization of the Apple Surface by Antagonistic Microorganisms in the Field
Authors: Leibinger Wolfgang , Breuker Barbara , Hahn Matthias , Mendgen Kurt
Published: May 2007

Selected isolates of Aureobasidium pullulans, Rhodotorula glutinis, and Bacillus subtilis reduced the size and number of lesions on wounded apples caused by the postharvest pathogens Penicillium expansum, Botrytis cinerea, and Pezicula malicorticis. Combinations of the antagonistic microorganisms were applied to apple trees in the field late in the growing season of two consecutive years. The population dynamics of the introduced microorganisms and the incidence of fruit decay were determined. Population sizes of introduced antagonists on apple surfaces increased in the field following application of treatments until harvest. After transfer of the fruit from the field into cold storage, the populations of the introduced antagonists remained higher than in the control treatments. Identification of the applied isolates of A. pullulans and R. glutinis during the experiments was achieved by isolate-specific DNA probes generated from random amplified polymorphic DNA. A combination of two strains of A. pullulans and one strain of R. glutinis suppressed rotting of apple to the same extent as the commonly used fungicide Euparen. Our data demonstrate that the application of antagonistic microorganisms in the field represents a promising alternative to fungicide treatments to control post-harvest diseases of apple.
Genetics of Virulence in Cochliobolus sativus and Resistance in Barley
Authors: Valjavec-Gratian Majda , Steffenson Brian J.
Published: May 2007

Spot blotch, caused by Cochliobolus sativus, is one of the most common foliar diseases of barley in the upper midwest region of the United States. To examine the genetics of host-specific virulence in C. sativus, a cross was made between isolate ND90Pr (which exhibits high virulence on barley genotype Bowman and low virulence on genotype ND 5883) and ND93-1 (which exhibits low virulence on both genotypes). Ascospore progeny segregated 48:55 for low virulence/high virulence on Bowman, indicating the presence of a single virulence gene in isolate ND90Pr. To complement the study of host-specific virulence in the pathogen, an experiment also was conducted on the genetics of specific resistance in the host. Progeny from a Bowman/ND 5883 cross were evaluated for their infection responses (IRs) to isolate ND90Pr at the seedling stage. The F2 population segregated 1:3 for low IRs (resistant)/high IRs (susceptible), indicating the presence of a single resistance gene in genotype ND 5883. This result was confirmed in the F3 generation, as a 1:2:1 ratio was found for homozygous resistant, segregating, and homozygous susceptible families, respectively. The data from this study demonstrate that both virulence in the pathogen and resistance in the host are under monogenic control in this specific host genotype/fungal isolate combination.