bluuebunny/crossref_metadata_2025 huggingface dataset:
Identifying the Potential Roles of PBX4 in Human Cancers Based on Integrative Analysis
Authors: Song Yipeng , Ma Rongna
Published: June 2022

PBX4 belongs to the pre-B-cell leukemia homeobox (PBX) transcription factors family and acts as a transcriptional cofactor of HOX proteins participating in several pathophysiological processes. Recent studies have revealed that the dysregulation of PBX4 is closely related to multiple diseases, especially cancers. However, the research on PBX4’s potential roles in 33 cancers from the Cancer Genome Atlas (TCGA) is still insufficient. Therefore, we performed a comprehensive pan-cancer analysis to explore the roles of PBX4with multiple public databases. Our results showed that PBX4 was differentially expressed in 17 types of human cancer and significantly correlated to the pathological stage, tumor grade, and immune and molecular subtypes. We used the Kaplan–Meier plotter and PrognoScan databases to find the significant associations between PBX4 expression and prognostic values of multiple cancers. It was also found that PBX4 expression was statistically related to mutation status, DNA methylation, immune infiltration, drug sensitivity, and immune checkpoint blockade (ICB) therapy. Additionally, we found that PBX4 was involved in different functional states of multiple cancers from the single-cell resolution perspective. Enrichment analysis results showed that PBX4-related genes were enriched in the cell cycle process, MAPK cascade, ncRNA metabolic process, positive regulation of GTPase activity, and regulation of lipase activity and mainly participated in the pathways of cholesterol metabolism, base excision repair, herpes simplex virus 1 infection, transcriptional misregulation in cancer, and Epstein–Barr virus infection. Altogether, our integrative analysis could help in better understanding the potential roles of PBX4 in different human cancers.
Expression of Zyxin in Non-Small Cell Lung Cancer—A Preliminary Study
Authors: Partynska Aleksandra , Gomulkiewicz Agnieszka , Piotrowska Aleksandra , Grzegrzolka Jedrzej , Rzechonek Adam , Ratajczak-Wielgomas Katarzyna , Podhorska-Okolow Marzenna , Dziegiel Piotr
Published: June 2022

Background: The potential involvement of zyxin (ZYX) in carcinogenesis has been investigated in many cancer types. However, there are a limited number of studies on the role of ZYX in the progression of non-small cell lung cancer (NSCLC). Since lung cancer is one of the most frequently diagnosed carcinomas, the aim of our study was to determine the localization and expression levels of ZYX in NSCLC and to correlate the results with the clinicopathological data. Materials and Methods: The expression of ZYX was assessed in NSCLC cases and in cell lines representing this tumor type. Levels of ZYX were determined in the clinical material using immunohistochemistry (IHC) and Western Blot. Real-time PCR was used to assess ZYX mRNA levels. The expression of ZYX was also checked in NSCLC cell lines using real-time PCR, Western Blot, and immunofluorescence/immunocytochemistry. Results: The results showed lower levels of ZYX in NSCLC cells compared with control tissues. This trend was observed at the protein and mRNA levels. The assays on the NSCLC model also demonstrated lower levels of ZYX in cancer cells compared with control cells. Conclusions: The decreased expression of ZYX in NSCLC may indicate a suppressor role of this protein in NSCLC.
Understanding Necroptosis in Pancreatic Diseases
Authors: He Ru , Wang Zhengfeng , Dong Shi , Chen Zhou , Zhou Wence
Published: June 2022

Intermediate between apoptosis and necrosis, necroptosis is a regulated caspase-independent programmed cell death that induces an inflammatory response and mediates cancer development. As our understanding improves, its role in the physiopathology of numerous diseases, including pancreatic diseases, has been reconsidered, and especially in pancreatitis and pancreatic cancer. However, the exact pathogenesis remains elusive, even though some studies have been conducted on these diseases. Its unique mechanisms of action in diseases are expected to bring prospects for the treatment of pancreatic diseases. Therefore, it is imperative to further explore its molecular mechanism in pancreatic diseases in order to identify novel therapeutic options. This article introduces recent related research on necroptosis and pancreatic diseases, explores necroptosis-related molecular pathways, and provides a theoretical foundation for new therapeutic targets for pancreatic diseases.
Molecular Detection of Venous Thrombosis in Mouse Models Using SPECT/CT
Authors: Dickhout Annemiek , Van de Vijver Pieter , Bitsch Nicole , van Hoof Stefan J. , Thomassen Stella L. G. D. , Massberg Steffen , Timmerman Peter , Verhaegen Frank , Koenen Rory R. , Dijkgraaf Ingrid , Hackeng Tilman M.
Published: June 2022

The efficacy of thrombolysis is inversely correlated with thrombus age. During early thrombogenesis, activated factor XIII (FXIIIa) cross-links α2-AP to fibrin to protect it from early lysis. This was exploited to develop an α2-AP-based imaging agent to detect early clot formation likely susceptible to thrombolysis treatment. In this study, this imaging probe was improved and validated using 111In SPECT/CT in a mouse thrombosis model. In vitro fluorescent- and 111In-labelled imaging probe-to-fibrin cross-linking assays were performed. Thrombus formation was induced in C57Bl/6 mice by endothelial damage (FeCl3) or by ligation (stenosis) of the infrarenal vena cava (IVC). Two or six hours post-surgery, mice were injected with 111In-DTPA-A16 and ExiTron Nano 12000, and binding of the imaging tracer to thrombi was assessed by SPECT/CT. Subsequently, ex vivo IVCs were subjected to autoradiography and histochemical analysis for platelets and fibrin. Efficient in vitro cross-linking of A16 imaging probe to fibrin was obtained. In vivo IVC thrombosis models yielded stable platelet-rich thrombi with FeCl3 and fibrin and red cell-rich thrombi with stenosis. In the stenosis model, clot formation in the vena cava corresponded with a SPECT hotspot using an A16 imaging probe as a molecular tracer. The fibrin-targeting A16 probe showed specific binding to mouse thrombi in in vitro assays and the in vivo DVT model. The use of specific and covalent fibrin-binding probes might enable the clinical non-invasive imaging of early and active thrombosis.
Murine Falcor/LL35 lncRNA Contributes to Glucose and Lipid Metabolism In Vitro and In Vivo
Authors: Shcherbinina Evgeniya , Abakumova Tatiana , Bobrovskiy Daniil , Kurochkin Ilia , Deinichenko Ksenia , Stekolshchikova Elena , Anikanov Nickolay , Ziganshin Rustam , Melnikov Pavel , Khrameeva Ekaterina , Logacheva Maria , Zatsepin Timofei , Sergeeva Olga
Published: June 2022

Glucose and lipid metabolism are crucial functional systems in eukaryotes. A large number of experimental studies both in animal models and humans have shown that long non-coding RNAs (lncRNAs) play an important role in glucose and lipid metabolism. Previously, human lncRNA DEANR1/linc00261 was described as a tumor suppressor that regulates a variety of biological processes such as cell proliferation, apoptosis, glucose metabolism and tumorigenesis. Here we report that murine lncRNA Falcor/LL35, a proposed functional analog of human DEANR1/linc00261, is predominantly expressed in murine normal hepatocytes and downregulated in HCC and after partial hepatectomy. The application of high-throughput approaches such as RNA-seq, LC-MS proteomics, lipidomics and metabolomics analysis allowed changes to be found in the transcriptome, proteome, lipidome and metabolome of hepatocytes after LL35 depletion. We revealed that LL35 is involved in the regulation of glycolysis and lipid biosynthesis in vitro and in vivo. Moreover, LL35 affects Notch and NF-κB signaling pathways in normal hepatocytes. All observed changes result in the decrease in the proliferation and migration of hepatocytes. We demonstrated similar phenotype changes between murine LL35 and human linc00261 depletion in vitro and in vivo that opens the opportunity to translate results for LL35 from a liver murine model to possible functions of human lncRNA linc00261.
Epigenetic Studies for Evaluation of NPS Toxicity: Focus on Synthetic Cannabinoids and Cathinones
Authors: Mazdai Leila , Fabbri Matteo , Tirri Micaela , Corli Giorgia , Arfè Raffaella , Marchetti Beatrice , Bilel Sabrine , Bergamin Eva , Gaudio Rosa Maria , Rubini Michele , De-Giorgio Fabio , Marti Matteo
Published: June 2022

In the recent decade, numerous new psychoactive substances (NPSs) have been added to the illicit drug market. These are synthetized to mimic the effects of classic drugs of abuse (i.e., cannabis, cocaine, etc.), with the purpose of bypassing substance legislations and increasing the pharmacotoxicological effects. To date, research into the acute pharmacological effects of new NPSs is ongoing and necessary in order to provide an appropriate contribution to public health. In fact, multiple examples of NPS-related acute intoxication and mortality have been recorded in the literature. Accordingly, several in vitro and in vivo studies have investigated the pharmacotoxicological profiles of these compounds, revealing that they can cause adverse effects involving various organ systems (i.e., cardiovascular, respiratory effects) and highlighting their potential increased consumption risks. In this sense, NPSs should be regarded as a complex issue that requires continuous monitoring. Moreover, knowledge of long-term NPS effects is lacking. Because genetic and environmental variables may impact NPS responses, epigenetics may aid in understanding the processes behind the harmful events induced by long-term NPS usage. Taken together, “pharmacoepigenomics” may provide a new field of combined study on genetic differences and epigenetic changes in drug reactions that might be predictive in forensic implications.
The Double Engines and Single Checkpoint Theory of Endometriosis
Authors: Hsu Che-Fang , Khine Aye Aye , Huang Hsuan-Shun , Chu Tang-Yuan
Published: June 2022

Endometriosis is a chronic disease characterized by the ectopic localization of the endometrial tissue in the peritoneal cavity. Consequently, it causes local pathological changes and systemic symptoms, affecting at least one in every ten women. This disease is difficult to diagnose early, it is prone to dissemination, is difficult to eradicate, tends to recur, and is regarded as “a cancer of no kill”. Indeed, the development of endometriosis closely resembles that of cancer in the way of mutagenesis, pelvic spreading, and immunological adaptation. While retrograde menstruation has been regarded as the primary cause of endometriosis, the role of ovulation and menstrual stimuli in the development of endometriosis has long been overlooked. The development of ovarian and peritoneal endometrioses, similar to the development of high-grade serous carcinoma in the fallopian tube fimbriae with intraperitoneal metastasis, depends highly on the carcinogens released during ovulation. Moreover, endometriosis carries an extremely hypermutated genome, which is non-inferior to the ultra-mutated endometrial cancer. The hypermutation would lead to an overproduction of new proteins or neoantigens. Because of this, the developing endometriosis may have to turn on the PD-1/PDL-1 “self-tolerance” checkpoint to evade immune surveillance, leaving an Achilles tendon for an immune checkpoint blockade. In this review, we present the double engines and single checkpoint theory of the genesis of endometriosis, provide the current pieces of evidence supporting the hypothesis, and discuss the new directions of prevention and treatment.
Naked-Eye Chromogenic Test Strip for Cyanide Sensing Based on Novel Phenothiazine Push–Pull Derivatives
Authors: Martín Várguez Pedro , Raimundo Jean-Manuel
Published: June 2022

Monitoring and detection of cyanide are of crucial interest as the latter plays versatile roles in many biological events, is ubiquitous in environment, and responsible for several acute poisoning and adverse health effects if ingested. We describe herein the synthesis and characterization of novel phenothiazine-based push–pull chromogenic chemosensors suitable for naked eye cyanide sensing. Indeed, specific detections were achieved for cyanide with a LOD of ca 9.12 to 4.59 µM and, interestingly, one of the new chemosensors has also revealed an unprecedented affinity for acetate with a LOD of ca 2.68 µM. Moreover, as proof of concept for practical applications, a paper test strip was prepared allowing its use for efficient qualitative naked eye cyanide sensing.
Professional Quality of Life of Healthcare Workers in Hospital Emergency Departments
Authors: Pérez-Valdecantos Daniel , Caballero-García Alberto , Bello Hugo J. , Noriega-González David , Palomar-Ciria Nora , Roche Alba , Roche Enrique , Córdova-Martínez Alfredo
Published: June 2022

In previous publications, we have reported that professionals in emergency departments undergo high levels of stress according to the amounts of salivary biomarkers (α-amylase and cortisol). The stress seems to be counteracted by increased levels of dehydroepiandrosterone. This hypothesis is confirmed in the answers to different tests indicating no working stress, no anxiety, optimal self-efficacy, and good sleeping quality. Altogether, these previous results suggest an optimal adaptation of these workers to the demanding situations that occur in emergency departments. To complete this research, we decided to evaluate the quality of life of health professionals working in the emergency departments of two Spanish hospitals. A descriptive cross-sectional study was carried out during the pre-pandemic months of July and August 2019. We determined the professional quality of life through the QPL-35 questionnaire in 97 participants, including nurses (n = 59) and medical doctors (n = 38). Answers to the test indicate that the studied participants working in emergency departments have a good perception of professional quality of life. This is reflected in the three dimensions of the questionnaire: managerial support, workloads, and intrinsic motivation. Based on the results of all answered tests, emergency healthcare staff seem to have adequate professional management, with levels of stress, sleep, and quality of life in line with a controlled lifestyle. Altogether, this would allow a correct adaptation to the demanding situations experienced in emergency departments. The relevance to clinical practice is that the COVID-19 pandemic has disrupted this controlled professional management.
On the Interaction between the Depth and Elevation of External Shading Devices in Tropical Daylit Classrooms with Symmetrical Bilateral Openings
Authors: Atthaillah  , Mangkuto Rizki A. , Koerniawan Mochamad Donny , Yuliarto Brian
Published: June 2022

External shading devices are an important design feature in tropical buildings, particularly for climate mitigation. However, the interaction between the depth and elevation of the shading devices and their impact on indoor daylight performance is not fully understood, especially for the case of tropical buildings with bilateral openings. This study therefore aims to evaluate the design possibilities of external shading devices with various depth and elevation in terms of daylight performance for the case of tropical school classrooms with bilateral openings in an Indonesian city. A computational simulation method using Radiance is utilized to perform annual daylight metrics calculations. Geometry, material, and simulation settings are prepared using the Ladybug tool under Grasshopper for four building orientations, namely 0°, 45°, 90°, and 135°. Sensitivity and uncertainty analyses are conducted for all design combinations. The results show that the interaction between a shading device’s depth and elevation is unique, depending on the building orientation and the availability of direct sunlight. In general, shading elevation is more influential, compared to shading depth, on the observed daylight metrics and the combined objective functions at all orientations.
A Framework of Community Pedestrian Network Design Based on Urban Network Analysis
Authors: Yang Xiaolin , Sun Haigang , Huang Yu , Fang Kailun
Published: June 2022

Community is the foundation of modern cities, where urban residents spend most of their lifetime. Effective and healthy community design plays a vital role in improving residents’ living quality. Pedestrian network is an indispensable element in the community. Successful pedestrian network design can help the residents be healthy both physically and mentally, build the awareness of “Go Green” for the society, and finally contribute to low-carbon and green cities. This paper proposes a community pedestrian network design method based on Urban Network Analysis with the help of the Rhino software. A case study of a typical community in Guangzhou, China was implemented, specifying the steps of the proposed method. The findings presented include the features of the citizens and the accessibilities of the neighbors that are obtained from the community pedestrian network simulation. The limitation and scalability of this method was discussed. The proposed method can be essential to designing healthy and sustainable communities.
Protection of Structural Layers of Transitions Zones on Railways against Freezing, Using Materials with a Low Coefficient of Thermal Conductivity
Authors: Hodas Stanislav , Pultznerova Alzbeta , Izvoltova Jana
Published: June 2022

Structural elements of railway buildings in transition zones are important parts of railway lines, where the structure of their materials is fundamentally changing. In the presented research results, these are changes in the railway body between a railway with a classic trackbed and a railway with a fixed track. The used materials of the transition zone and associated railway sections must be resistant to the effects of frost in winter. The experiments show the detected freezing depths using a zero isotherm at 0 °C. The temperature period before the onset of frost in winter is also an important factor. Numerical models of transition zones were loaded by freezing conditions. Based on the results of the experiments, frost protection measures have been proposed. To improve the temperature transition through the layers, materials with a low coefficient of thermal conductivity of transition zones have been proposed in the experimental models.
Iron Oxide Nanoparticles for Visualization of Prostate Cancer in MRI
Authors: Kader Avan , Kaufmann Jan O. , Mangarova Dilyana B. , Moeckel Jana , Brangsch Julia , Adams Lisa C. , Zhao Jing , Reimann Carolin , Saatz Jessica , Traub Heike , Buchholz Rebecca , Karst Uwe , Hamm Bernd , Makowski Marcus R.
Published: June 2022

Prostate cancer (PCa) is one of the most common cancers in men. For detection and diagnosis of PCa, non-invasive methods, including magnetic resonance imaging (MRI), can reduce the risk potential of surgical intervention. To explore the molecular characteristics of the tumor, we investigated the applicability of ferumoxytol in PCa in a xenograft mouse model in two different tumor volumes, 500 mm3 and 1000 mm3. Macrophages play a key role in tumor progression, and they are able to internalize iron-oxide particles, such as ferumoxytol. When evaluating T2*-weighted sequences on MRI, a significant decrease of signal intensity between pre- and post-contrast images for each tumor volume (n = 14; p < 0.001) was measured. We, furthermore, observed a higher signal loss for a tumor volume of 500 mm3 than for 1000 mm3. These findings were confirmed by histological examinations and laser ablation inductively coupled plasma-mass spectrometry. The 500 mm3 tumors had 1.5% iron content (n = 14; σ = 1.1), while the 1000 mm3 tumors contained only 0.4% iron (n = 14; σ = 0.2). In vivo MRI data demonstrated a correlation with the ex vivo data (R2 = 0.75). The results of elemental analysis by inductively coupled plasma-mass spectrometry correlated strongly with the MRI data (R2 = 0.83) (n = 4). Due to its long retention time in the blood, biodegradability, and low toxicity to patients, ferumoxytol has great potential as a contrast agent for visualization PCa.
Pretransplant Systemic Lipidomic Profiles in Allogeneic Stem Cell Transplant Recipients
Authors: Hatfield Kimberley Joanne , Bruserud Øystein , Reikvam Håkon
Published: June 2022

Allogeneic stem cell transplantation is used in the treatment of high-risk hematological malignancies. However, this treatment is associated with severe treatment-related morbidity and mortality. The metabolic status of the recipient may be associated with the risk of development of transplant-associated complications such as graft-versus-host disease (GVHD). To better understand the impact of the lipidomic profile of transplant recipients on posttransplant complications, we evaluated the lipid signatures of patients with hematological disease using non-targeted lipidomics. In the present study, we studied pretransplant serum samples derived from 92 consecutive patients with acute myeloid leukemia (AML) or high-risk myelodysplastic syndrome (MDS). A total of 960 lipid biochemicals were identified, and the pretransplant lipidomic profiles differed significantly when comparing patients with and without the risk factors: (i) pretransplant inflammation, (ii) early fluid overload, and (iii) patients with and without later steroid-requiring acute GVHD. All three factors, but especially patients with pretransplant inflammation, were associated with decreased levels of several lipid metabolites. Based on the overall concentrations of various lipid subclasses, we identified a patient subset characterized by low lipid levels, increased frequency of MDS patients, signs of inflammation, decreased body mass index, and an increased risk of early non-relapse mortality. Metabolic targeting has been proposed as a possible therapeutic strategy in allotransplant recipients, and our present results suggest that the clinical consequences of therapeutic intervention (e.g., nutritional support) will also differ between patients and depend on the metabolic context.
The Landscape and Clinical Application of the Tumor Microenvironment in Gastroenteropancreatic Neuroendocrine Neoplasms
Authors: Xu Shuaishuai , Ye Chanqi , Chen Ruyin , Li Qiong , Ruan Jian
Published: June 2022

Gastroenteropancreatic neuroendocrine neoplasms feature high heterogeneity. Neuroendocrine tumor cells are closely associated with the tumor microenvironment. Tumor-infiltrating immune cells are mutually educated by each other and by tumor cells. Immune cells have dual protumorigenic and antitumorigenic effects. The immune environment is conducive to the invasion and metastasis of the tumor; in turn, tumor cells can change the immune environment. These cells also form cytokines, immune checkpoint systems, and tertiary lymphoid structures to participate in the process of mutual adaptation. Additionally, the fibroblasts, vascular structure, and microbiota exhibit interactions with tumor cells. From bench to bedside, clinical practice related to the tumor microenvironment is also regarded as promising. Targeting immune components and angiogenic regulatory molecules has been shown to be effective. The clinical efficacy of immune checkpoint inhibitors, adoptive cell therapy, and oncolytic viruses remains to be further discussed in clinical trials. Moreover, combination therapy is feasible for advanced high-grade tumors. The regulation of the tumor microenvironment based on multiple omics results can suggest innovative therapeutic strategies to prevent tumors from succeeding in immune escape and to support antitumoral effects.
Toward a Mechanistic Understanding of Poly- and Perfluoroalkylated Substances and Cancer
Authors: Boyd Raya I. , Ahmad Saeed , Singh Ratnakar , Fazal Zeeshan , Prins Gail S. , Madak Erdogan Zeynep , Irudayaraj Joseph , Spinella Michael J.
Published: June 2022

Poly- and perfluoroalkylated substances (PFAS) are chemicals that persist and bioaccumulate in the environment and are found in nearly all human populations through several routes of exposure. Human occupational and community exposure to PFAS has been associated with several cancers, including cancers of the kidney, testis, prostate, and liver. While evidence suggests that PFAS are not directly mutagenic, many diverse mechanisms of carcinogenicity have been proposed. In this mini-review, we organize these mechanisms into three major proposed pathways of PFAS action—metabolism, endocrine disruption, and epigenetic perturbation—and discuss how these distinct but interdependent pathways may explain many of the proposed pro-carcinogenic effects of the PFAS class of environmental contaminants. Notably, each of the pathways is predicted to be highly sensitive to the dose and window of exposure which may, in part, explain the variable epidemiologic and experimental evidence linking PFAS and cancer. We highlight testicular and prostate cancer as models to validate this concept.
Vital Role of Synthesis Temperature in Co–Cu Layered Hydroxides and Their Fenton-like Activity for RhB Degradation
Authors: Zhang Ruixue , Liu Yanping , Jiang Xinke , Meng Bo
Published: June 2022

Cu and Co have shown superior catalytic performance to other transitional elements, and layered double hydroxides (LDHs) have presented advantages over other heterogeneous Fenton catalysts. However, there have been few studies about Co–Cu LDHs as catalysts for organic degradation via the Fenton reaction. Here, we prepared a series of Co–Cu LDH catalysts by a co-precipitation method under different synthesis temperatures and set Rhodamine B (RhB) as the target compound. The structure-performance relationship and the influence of reaction parameters were explored. A study of the Fenton-like reaction was conducted over Co–Cu layered hydroxide catalysts, and the variation of synthesis temperature greatly influenced their Fenton-like catalytic performance. The Co–Cut=65°C catalyst with the strongest LDH structure showed the highest RhB removal efficiency (99.3% within 30 min). The change of synthesis temperature induced bulk-phase transformation, structural distortion, and metal–oxygen (M–O) modification. An appropriate temperature improved LDH formation with defect sites and lengthened M–O bonds. Co–Cu LDH catalysts with a higher concentration of defect sites promoted surface hydroxide formation for H2O2 adsorption. These oxygen vacancies (Ovs) promoted electron transfer and H2O2 dissociation. Thus, the Co–Cu LDH catalyst is an attractive alternative organic pollutants treatment.
Functional Characterization of Recombinant Raw Starch Degrading α-Amylase from Roseateles terrae HL11 and Its Application on Cassava Pulp Saccharification
Authors: Prongjit Daran , Lekakarn Hataikarn , Bunterngsook Benjarat , Aiewviriyasakul Katesuda , Sritusnee Wipawee , Champreda Verawat
Published: June 2022

Exploring new raw starch-hydrolyzing α-amylases and understanding their biochemical characteristics are important for the utilization of starch-rich materials in bio-industry. In this work, the biochemical characteristics of a novel raw starch-degrading α-amylase (HL11 Amy) from Roseateles terrae HL11 was firstly reported. Evolutionary analysis revealed that HL11Amy was classified into glycoside hydrolase family 13 subfamily 32 (GH13_32). It contains four protein domains consisting of domain A, domain B, domain C and carbohydrate-binding module 20 (CMB20). The enzyme optimally worked at 50 °C, pH 4.0 with a specific activity of 6270 U/mg protein and 1030 raw starch-degrading (RSD) U/mg protein against soluble starch. Remarkably, HL11Amy exhibited activity toward both raw and gelatinized forms of various substrates, with the highest catalytic efficiency (kcat/Km) on starch from rice, followed by potato and cassava, respectively. HL11Amy effectively hydrolyzed cassava pulp (CP) hydrolysis, with a reducing sugar yield of 736 and 183 mg/g starch from gelatinized and raw CP, equivalent to 72% and 18% conversion based on starch content in the substrate, respectively. These demonstrated that HL11Amy represents a promising raw starch-degrading enzyme with potential applications in starch modification and cassava pulp saccharification.
Rheological Characterization and Quality of Emulsions Based on Fats Produced during the Reaction Catalyzed by Immobilized Lipase from Rhizomucor Miehei
Authors: Kowalska Małgorzata , Krzton-Maziopa Marcin , Krzton-Maziopa Anna , Zbikowska Anna , Szakiel Jerzy
Published: June 2022

It has been shown that structured lipids, formed in the process of enzymatic modification of natural hard fat with walnut oil, are capable of stabilizing emulsion systems without the need to add additional emulsifiers. This is especially true for emulsions containing fat formed during enzymatic modification when the amount of added water to the reaction catalyst was in the range of 12–16 wt%. Physicochemical evaluations, i.e., the average particle size, its growth, distribution, and dispersity coefficient, were comparable with the reference emulsion where the emulsifier was lecithin, well-known for its emulsifying properties. Microstructure studies also confirmed the above observations. Rheological studies performed on a set of emulsions containing structured lipids of variable composition confirmed that interesterified lipid blends can be directly utilized as a fat base in the preparation of stable emulsions. The consistency, thixotropic behavior, long-term shelf life, and thermal stability of these emulsions were found to be comparable to systems stabilized with conventional emulsifiers, i.e., sunflower lecithine. Our approach offers the opportunity for the preparation of stable emulsion systems, free from additional emulsifiers, for the food or cosmetics industry, which is extremely important from the point of view of the preparation of products free from allergens.
Integrated Analysis Reveals S100a8/a9 Regulates Autophagy and Apoptosis through the MAPK and PI3K-AKT Signaling Pathway in the Early Stage of Myocardial Infarction
Authors: Yi Weijue , Zhu Rongli , Hou Xiuyang , Wu Fengmin , Feng Rui
Published: June 2022

Myocardial infarction (MI), a type of coronary heart disease, has had a significantly increased incidence in recent years. The balance of cardiomyocyte apoptosis and autophagy after MI is one of the main determinants of patient prognosis. Both affect myocardial fibrosis and ventricular remodeling and regulate cell survival. However, there are few studies on the regulation mechanism of cardiomyocyte autophagy and apoptosis in the early stage after MI. In this study, based on analyzing the scRNA-seq and mRNA-seq data of mice in the early stage of MI, we found that the expression of S100a8 and S100a9 increased first and then decreased in the early stage of MI, and their expression level changed with the number of neutrophils. Further, through the functional enrichment analysis of the differentially expressed genes, we found that S100a8 and S100a9 were simultaneously associated with autophagy and apoptosis and could regulate autophagy and apoptosis of cardiomyocytes through MAPK or PI3K-AKT signaling pathways. This study provides valuable insights for clarifying the pathogenesis of early stage MI and improving its early treatment.
Thwarting of Lphn3 Functions in Cell Motility and Signaling by Cancer-Related GAIN Domain Somatic Mutations
Authors: Avila-Zozaya Monserrat , Rodríguez-Hernández Brenda , Monterrubio-Ledezma Feliciano , Cisneros Bulmaro , Boucard Antony A.
Published: June 2022

Cancer progression relies on cellular transition states accompanied by changes in the functionality of adhesion molecules. The gene for adhesion G protein-coupled receptor latrophilin-3 (aGPCR Lphn3 or ADGRL3) is targeted by tumor-specific somatic mutations predominantly affecting the conserved GAIN domain where most aGPCRs are cleaved. However, it is unclear how these GAIN domain-altering mutations impact Lphn3 function. Here, we studied Lphn3 cancer-related mutations as a proxy for revealing unknown GAIN domain functions. We found that while intra-GAIN cleavage efficiency was unaltered, most mutations produced a ligand-specific impairment of Lphn3 intercellular adhesion profile paralleled by an increase in cell-matrix actin-dependent contact structures for cells expressing the select S810L mutation. Aberrant remodeling of the intermediate filament vimentin, which was found to coincide with Lphn3-induced modification of nuclear morphology, had less impact on the nuclei of S810L expressing cells. Notoriously, receptor signaling through G13 protein was deficient for all variants bearing non-homologous amino acid substitutions, including the S810L variant. Analysis of cell migration paradigms revealed a non-cell-autonomous impairment in collective cell migration indistinctly of Lphn3 or its cancer-related variants expression, while cell-autonomous motility was potentiated in the presence of Lphn3, but this effect was abolished in S810L GAIN mutant-expressing cells. These data identify the GAIN domain as an important regulator of Lphn3-dependent cell motility, thus furthering our understanding of cellular and molecular events linking Lphn3 genetic somatic mutations to cancer-relevant pathogenesis mechanisms.
Recent Trends in Carbon Nanotube Electrodes for Flexible Supercapacitors: A Review of Smart Energy Storage Device Assembly and Performance
Authors: Das Himadri Tanaya , Dutta Swapnamoy , Balaji Tamilarasan Elango , Das Nigamananda , Das Payaswini , Dheer Neelu , Kanojia Rajni , Ahuja Preety , Ujjain Sanjeev Kumar
Published: June 2022

In order to upgrade existing electronic technology, we need simultaneously to advance power supply devices to match emerging requirements. Owing to the rapidly growing wearable and portable electronics markets, the demand to develop flexible energy storage devices is among the top priorities for humankind. Flexible supercapacitors (FSCs) have attracted tremendous attention, owing to their unrivaled electrochemical performances, long cyclability and mechanical flexibility. Carbon nanotubes (CNTs), long recognized for their mechanical toughness, with an elastic strain limit of up to 20%, are regarded as potential candidates for FSC electrodes. Along with excellent mechanical properties, high electrical conductivity, and large surface area, their assemblage adaptability from one-dimensional fibers to two-dimensional films to three-dimensional sponges makes CNTs attractive. In this review, we have summarized various assemblies of CNT structures, and their involvement in various device configurations of FSCs. Furthermore, to present a clear scenario of recent developments, we discuss the electrochemical performance of fabricated flexible devices of different CNT structures and their composites, including additional properties such as compressibility and stretchability. Additionally, the drawbacks and benefits of the study and further potential scopes are distinctly emphasized for future researchers.
The Impact of Cost-Containment Schemes on Outpatient Services for Schoolchildren with Refractive Errors in Taiwan—A Population-Based Study
Authors: Chang Koyin , Lee Wen-Li , Ying Yung-Hsiang
Published: June 2022

Objectives: Extant research on cost-sharing finds no impact on health care utilization when the amount is insubstantial. This research investigates the effects on nonacute outpatient services for schoolchildren with refractive errors in Taiwan and discusses the potential harm caused by cost sharing and relevant cost containment policies. Methods: Longitudinal claims data from the National Health Insurance database are employed. District demographic information is also used for aggregate-level analyses. Interventional modeling is conducted on pooled individual-level data with a Poisson model and negative binomial models. Generalized least square modeling is performed on aggregate district-level data to elucidate the impacts of cost sharing and the reimbursement rate with controls for patient and institutional characteristics, district socioeconomic factors, and competitiveness among institutions. Results: The findings of this study show that cost sharing does not significantly affect children’s utilization of outpatient services in the patient-level analyses. However, it significantly decreases the service volume based on the results of district aggregate analyses. There are potentially marginal patients in society, and they are more likely to be girls in poorer families, whose chances of seeking medical care significantly decrease when cost sharing increases. Conclusions: The gap in health inequity can be widened when stringent cost-containment policies are implemented. The offset effect caused by delayed care may also result in higher health care expenditures later. Cost sharing for children should be separately and prudently designed to better protect them from deprivations caused by changes in health policies.
Blockchain Technology toward Creating a Smart Local Food Supply Chain
Authors: Damoska Sekuloska Jovanka , Erceg Aleksandar
Published: June 2022

The primary purpose of the supply chains is to ensure and secure the availability and smooth flow of the necessary resources for efficient production processes and consumption. Supply chain activities have been experiencing significant changes due to the importance and creation of the integrated process. Blockchain is viewed as an innovative tool for transforming supply chain management’s (SCM’s) actual business model; on the other hand, the SCM provides an applicative value of blockchain technology. The research is focused on examining the influence of blockchain technology on the increasing efficiency, transparency, auditability, traceability, and security issues of the food supply chain (FSC), with particular attention to the local food supply chain (LFSC). The main objective of the research is to suggest the implementation of blockchain technology in the local food supply chain as a niche of the food industry. The result of the research is the identification of a three-layers model of a smart local food supply chain. The model provides efficient and more transparent tracking across the local food supply chain, improving food accessibility, traceability, and safety.
Performance of Loop-Mediated Isothermal Amplification (LAMP) Targeting the Nucleocapsid (N) Gene of SARS-CoV-2 for Rapid Diagnosis of COVID-19: Systematic Review and Meta-Analysis
Authors: Hoffmann Elias da Rosa , Dreifke Tatiane Marines , Ghiotto Marco Antonio , Gaboardi Guilherme , Cantarelli Vlademir Vicente
Published: June 2022

SARS-CoV-2 emerged as a new respiratory virus spreading rapidly to all areas of the world. A systematic review with meta-analysis concerning the use of Loop-Mediated Isothermal Amplification (LAMP) methodology targeting the SARS-CoV-2 nucleoprotein (N) gene was conducted. The search resulted in 229 articles, of which 19 articles were selected to compose the final review. In general, LAMP showed a high specificity in the detection of SARS-CoV-2 and a wide variation of sensitivity values. The LAMP method was considered a fast and highly specific method for SARS-CoV-2 detection; however, some variables may affect its sensitivity and overall performance.
Agroclimatic Zones and Cropping Systems in the Southwestern Regions of the Kingdom of Saudi Arabia: Characterization, Classification and Improvement Potential
Authors: Morgounov Alexey , Abubakr Mohamed , Alhendi Abdullah , Alkhatran Abdullah , Alhuwaymil Hussam , Ghosh Kakoli
Published: June 2022

The southwestern regions of the Kingdom of Saudi Arabia (KSA) are geographically and agriculturally diverse. Over millennia, crop production in these regions has evolved to use renewable water resources sustainably. This study analysed environmental and crop production data for 58 governorates in KSA’s four southwestern regions: Al Baha, Aseer, Jazan and Makkah. The biplot analysis generated six clusters of cropping systems: sorghum, cereals, dates, watermelon, vegetables and fruits, and mixed. The main biophysical factors shaping these systems are topography, altitude, rainfall, air temperature and soils. Sorghum, grown on more than half of the cultivated land, dominates the two main systems. Fruits (subtropical and temperate) and open field vegetables are important elements in most systems. The main challenge is combining a moderate use of water with greater crop diversity. Cereals consume relatively little water, but their dominance within the systems reduces overall diversity. Another important issue is the low-input technologies used to cultivate sorghum and other cereals. Landraces or older varieties are planted and little, if any, fertilizers and pesticides are applied. The introduction of sustainable intensification packages is needed, which can begin with making improved varieties accessible to farmers, promoting conservation agriculture, and integrated pest management practices.
Postglacial Expansion Routes and Mitochondrial Genetic Diversification of the Freshwater Pearl Mussel in Europe and North America
Authors: Vikhrev Ilya V. , Ieshko Evgenii P. , Kondakov Alexander V. , Mugue Nikolai S. , Bovykina Galina V. , Efremov Denis A. , Bulakhov Andrei G. , Tomilova Alena A. , Yunitsyna Olesya A. , Bolotov Ivan N.
Published: June 2022

The freshwater pearl mussel Margaritifera margaritifera is a unionid species distributed across Northwestern Russia, Fennoscandia, Western and Southwestern Europe, and the Atlantic Coast of North America. In this study, we reconstructed the post-glacial expansion routes of this species based on FST genetic distances and the fact that M. margaritifera distribution is directly connected with salmonid expansion. The freshwater-pearl-mussel populations from North America and Northeastern Europe were the closest groups, judging by FST distances, supporting the concept of the North Atlantic Salmo salar colonization of the Barents and White Sea basins. We also documented that unique haplotypes in the populations of the Baltic and White Sea basins may have originated in isolated glacial refugia in Eastern and Northeastern Europe. The Iberian clade was the most distant group of populations, which is consistent with the previously observed role of the Iberian Peninsula as a glacial refugium. The high genetic diversity in the populations of Northern and Eastern Karelia was facilitated by migrants utilizing complex periglacial hydrological networks and by admixture in the contact zone where the migration flows met. We confirm that this region should be considered as a major center of genetic diversity within the European part of the species’ range.
Morphological and Molecular Phylogenetic Analysis of a Lemanea Specimen (Batrachospermales, Rhodophyta) from China
Authors: Nan Fangru , Zhao Yiding , Feng Jia , Lv Junping , Liu Qi , Liu Xudong , Xie Shulian
Published: June 2022

The genus Lemanea is an evolutionally derived lineage of freshwater Rhodophyta which has a rare distribution. Morphological characterization and molecular phylogenetic analyses were conducted for a Lemanea specimen collected from Guilin, China, in this study. The results based on morphological observation and molecular evidence, including rbcL and SSU sequences, showed it was a new record of L. manipurensis Ganesan, West, Zuccarello et Rout in China. The specimen in this study was morphologically characterized by branches that were positioned in the lower part of the thallus, hair cells absent around the outer cortex, ellipsoidal and single carpospores at the top of the gonimoblast filaments and spermatangia formed in continuous wide rings on the thallus nodes. By comparing the morphology of specimens collected from Guilin, China, and the holotype specimen in India, it was found that the spermatangial shapes were variable among different populations. It was found that the presence or absence of hair cells around the outer cortex was not a reliable characteristic for the identification of the genus Lemanea based on a comparison between L. manipurensis collected in Guangxi and in India and another four Lemanea species previously recorded in China. The results of this study provided molecular evidence and a theoretical basis for molecular phylogenetic research on the genus Lemanea and enriched the species diversity and geographical distribution of Lemanea in China.
Large Pericardial Effusion—Diagnostic and Therapeutic Options, with a Special Attention to the Role of Prolonged Pericardial Fluid Drainage
Authors: Dybowska Małgorzata , Szturmowicz Monika , Błasińska Katarzyna , Gątarek Juliusz , Augustynowicz-Kopeć Ewa , Langfort Renata , Kuca Paweł , Tomkowski Witold
Published: June 2022

Background: Large pericardial effusion (LPE) is associated with high mortality. In patients with cardiac tamponade or with suspected bacterial etiology of pericardial effusion, urgent pericardial decompression is necessary. Aim: The aim of the present retrospective study was to assess the short-term results of pericardial decompression combined with prolonged drainage in LPE. Material: This study included consecutive patients with LPE who had been treated with pericardial fluid drainage between 2007 and 2017 in the National Tuberculosis and Lung Diseases Research Institute. Methods: Echocardiographic examination was used to confirm LPE and the signs of cardiac tamponade. Pericardiocentesis or surgical decompression were combined with pericardial fluid (PF) drainage. Short-term effectiveness of therapy was defined as less than 5 mm of fluid behind the left ventricular posterior wall in echocardiography. Results: The analysis included 74 patients treated with pericardial fluid drainage (33 female and 41 male), mean age 58 years, who underwent pericardial decompression. Out of 74 patients, 26 presented with cardiac tamponade symptoms. Pericardiocentesis was performed in 18 patients and pericardiotomy in 56 patients. Median PF drainage duration was 13 days. In 17 out of 25 patients with neoplastic PF, intrapericardial cisplatin therapy was implemented. In 4 out of 49 patients with non-malignant PF, purulent pericarditis was recognized and intrapericardial fibrinolysis was used. Short-term effectiveness of the therapy was obtained in all of patients. Non-infective complications were noted in 16% of patients and infective ones in 10%. Conclusion: Pericardial decompression combined with prolonged PF drainage was safe and efficient method of LPE treatment.
Metaplastic Matrix-Producing Carcinoma and Apocrine Lobular Carcinoma In Situ Associated with Microglandular Adenosis: A Unique Case Report
Authors: Koufopoulos Nektarios , Dimas Dionysios , Antoniadou Foteini , Sitara Kyparissia , Balalis Dimitrios , Boutas Ioannis , Gouloumis Alina Roxana , Kontogeorgi Adamantia , Khaldi Lubna
Published: June 2022

Microglandular adenosis is a non-lobulocentric haphazard proliferation of small round glands composed of a single layer of flat to cuboidal epithelial cells. The glandular structures lack a myoepithelial layer; however, they are surrounded by a basement membrane. Its clinical course is benign, when it is not associated with invasive carcinoma. In around 30% of cases, there is a gradual transition to atypical microglandular adenosis, carcinoma in situ, and invasive breast carcinoma of several different histologic subtypes, including an invasive carcinoma of no special type, metaplastic matrix-producing carcinoma, secretory carcinoma, metaplastic carcinoma with squamous differentiation, acinic cell carcinoma, spindle cell carcinoma, and adenoid cystic carcinoma. Recent molecular studies suggest that microglandular adenosis is a non-obligate precursor of triple-negative breast carcinomas. In this manuscript, we present a unique case of microglandular adenosis associated with metaplastic matrix-producing carcinoma and HER-2 neu oncoprotein positive pleomorphic lobular carcinoma in situ with apocrine differentiation in a 79-year-old patient.