bluuebunny/crossref_metadata_2025 huggingface dataset:
Supplementary movie 2 Adjacent tumor spheroids disorganize and migrate on CAF networks from Cancer-Associated Fibroblasts Induce a Collagen Cross-link Switch in Tumor Stroma
Authors: Pankova Daniela , Chen Yulong , Terajima Masahiko , Schliekelman Mark J. , Baird Brandi N. , Fahrenholtz Monica , Sun Li , Gill Bartley J. , Vadakkan Tegy J. , Kim Min P. , Ahn Young-Ho , Roybal Jonathon D. , Liu Xin , Parra Cuentas Edwin Roger , Rodriguez Jaime , Wistuba Ignacio I. , Creighton Chad J. , Gibbons Don L. , Hicks John M. , Dickinson Mary E. , West Jennifer L. , Grande-Allen K. Jane , Hanash Samir M. , Yamauchi Mitsuo , Kurie Jonathan M.
Published: April 2023

A Matrigel surface was seeded first with GFP-tagged aggregates followed 24 h later by a CAF single-cell suspension. Time-lapse microscopy was initiated 24 hours after CAF seeding. Dissociating tumor aggregates migrate toward each other (arrow). Scale bar, 100 μm. Movie compiled at 2 frames per second.
Supplementary movie 1 CAFs spontaneously organize into networks with contractile properties from Cancer-Associated Fibroblasts Induce a Collagen Cross-link Switch in Tumor Stroma
Authors: Pankova Daniela , Chen Yulong , Terajima Masahiko , Schliekelman Mark J. , Baird Brandi N. , Fahrenholtz Monica , Sun Li , Gill Bartley J. , Vadakkan Tegy J. , Kim Min P. , Ahn Young-Ho , Roybal Jonathon D. , Liu Xin , Parra Cuentas Edwin Roger , Rodriguez Jaime , Wistuba Ignacio I. , Creighton Chad J. , Gibbons Don L. , Hicks John M. , Dickinson Mary E. , West Jennifer L. , Grande-Allen K. Jane , Hanash Samir M. , Yamauchi Mitsuo , Kurie Jonathan M.
Published: April 2023

A Matrigel surface was seeded first with GFP-tagged aggregates followed 24 h later by a CAF single-cell suspension. Time-lapse microscopy was immediately after CAF seeding. Scale bar, 200 μm. Movie compiled at 8 frames per second.
Figure S5 from miR-155 Is Downregulated in Familial Adenomatous Polyposis and Modulates WNT Signaling by Targeting AXIN1 and TCF4
Authors: Prossomariti Anna , Piazzi Giulia , D'Angelo Leonarda , Miccoli Sara , Turchetti Daniela , Alquati Chiara , Montagna Claudio , Bazzoli Franco , Ricciardiello Luigi
Published: April 2023

mRNA expression levels of AXIN1 and TCF4 in DLD-1, SW480 and CACO-2 cell lines upon miR-155-5p induction.
Supplementary Figures 6-7 from Olaparib, Monotherapy or with Ionizing Radiation, Exacerbates DNA Damage in Normal Tissues: Insights from a New p21 Reporter Mouse
Authors: McMahon Michael , Frangova Tania G. , Henderson Colin J. , Wolf C. Roland
Published: April 2023

Figure S6: Beta-gal staining of uterus sections from untreated and irradiated p21 reporter mice. Figure S7: Beta-gal staining of whole lung, large intestine and liver sections from untreated and irradiated p21 reporter mice.
Figure S3 from miR-155 Is Downregulated in Familial Adenomatous Polyposis and Modulates WNT Signaling by Targeting AXIN1 and TCF4
Authors: Prossomariti Anna , Piazzi Giulia , D'Angelo Leonarda , Miccoli Sara , Turchetti Daniela , Alquati Chiara , Montagna Claudio , Bazzoli Franco , Ricciardiello Luigi
Published: April 2023

Effects of miR-155-5p induction on WNT/β-CATENIN signaling pathway in HCT116 cells.
Figure S2 from miR-155 Is Downregulated in Familial Adenomatous Polyposis and Modulates WNT Signaling by Targeting AXIN1 and TCF4
Authors: Prossomariti Anna , Piazzi Giulia , D'Angelo Leonarda , Miccoli Sara , Turchetti Daniela , Alquati Chiara , Montagna Claudio , Bazzoli Franco , Ricciardiello Luigi
Published: April 2023

Protein quantification of WNT signaling components in DLD-1, SW480 and CACO-2 cell lines upon miR-155-5p induction.
Supplementary Figures 1-3 from Olaparib, Monotherapy or with Ionizing Radiation, Exacerbates DNA Damage in Normal Tissues: Insights from a New p21 Reporter Mouse
Authors: McMahon Michael , Frangova Tania G. , Henderson Colin J. , Wolf C. Roland
Published: April 2023

Figure S1: Quantitative analysis of the immunoblots of Fig 1B. Figure S2: Quantitative analysis of the immunoblots of Fig 1C. Figure S3: Beta-gal staining of brain sections from an untreated p21 reporter mouse.
Supplemental Figure 3 from Combined TRAF6 Targeting and Proteasome Blockade Has Anti-myeloma and Anti-Bone Resorptive Effects
Authors: Chen Haiming , Li Mingjie , Sanchez Eric , Wang Cathy S. , Lee Tiffany , Soof Camilia M. , Casas Christian E. , Cao Jasmin , Xie Colin , Udd Kyle A. , DeCorso Kevin , Tang George Y. , Spektor Tanya M. , Berenson James R.
Published: April 2023

Evaluation of AKT signaling pathway in primary MM cells treated with a TRAF6dn inhibitory peptide.
Supplemental Figure 2 from Combined TRAF6 Targeting and Proteasome Blockade Has Anti-myeloma and Anti-Bone Resorptive Effects
Authors: Chen Haiming , Li Mingjie , Sanchez Eric , Wang Cathy S. , Lee Tiffany , Soof Camilia M. , Casas Christian E. , Cao Jasmin , Xie Colin , Udd Kyle A. , DeCorso Kevin , Tang George Y. , Spektor Tanya M. , Berenson James R.
Published: April 2023

TRAF6dn FITC-labeled peptide cultured with MM cell lines for 72 hours and monitored FITC positive MM cells using immunofluorescent microscopy (20X).
Supplementary Figure 10 from Olaparib, Monotherapy or with Ionizing Radiation, Exacerbates DNA Damage in Normal Tissues: Insights from a New p21 Reporter Mouse
Authors: McMahon Michael , Frangova Tania G. , Henderson Colin J. , Wolf C. Roland
Published: April 2023

Figure S10: Beta-gal staining of various organs from control and etoposide-treated p21 reporter mice.
Supplementary Figure 1 from Impeding Circulating Tumor Cell Reseeding Decelerates Metastatic Progression and Potentiates Chemotherapy
Authors: Qian Chen , Worrede-Mahdi Asurayya , Shen Fei , DiNatale Anthony , Kaur Ramanpreet , Zhang Qiang , Cristofanilli Massimo , Meucci Olimpia , Fatatis Alessandro
Published: April 2023

IC50 for the FX-68 compound.
Supplemental Material from p53 Promotes Cell Survival due to the Reversibility of Its Cell-Cycle Checkpoints
Authors: Lukin Dana J. , Carvajal Luis A. , Liu Wen-jun , Resnick-Silverman Lois , Manfredi James J.
Published: April 2023

Supplemental Material. Supplemental Figure S1. A: Doxorubicin treatment leads to the concentration-dependent induction of p53 and p21 in parental U2OS cells. U2OS cells were treated with doxorubicin at concentrations ranging from 0.05 μg/ml to 0.2 μg/ml for 24 hours and harvested. Cell extracts were analyzed by immunoblotting for expression of p53, p21, and β-actin (loading control). B: Responses of control and p53-ablated cells to doxorubicin are not clonal in nature. U2OS derivatives expressing either a control shRNA (clone 1 and clone 4) or p53 shRNA (clone 7 and clone 8) were untreated or treated with 0.05 μg/ml doxorubicin for 1-6 days, and then analyzed by flow cytometry. The percentage of cells in each phase of the cell cycle or with a DNA content of less than 2N (
Table S1, Table S2, Table S3; Table S4 from Homeobox Transcription Factor NKX2-1 Promotes Cyclin D1 Transcription in Lung Adenocarcinomas
Authors: Harada Masanori , Sakai Satoshi , Ohhata Tatsuya , Kitagawa Kyoko , Mikamo Masashi , Nishimoto Koji , Uchida Chiharu , Niida Hiroyuki , Kotake Yojiro , Sugimura Haruhiko , Suda Takafumi , Kitagawa Masatoshi
Published: April 2023

Table S1: Sequences of oligonucleotides, Table S2: Patient characteristics, Table S3: Univariate and Multivariate analysis of SCC; Supplementary Table S4. Correlation of NKX2-1 and YB-1 expression in NSCLCs.
Supplemental Tables 1 and 2 from MUC1-C Represses the Crumbs Complex Polarity Factor CRB3 and Downregulates the Hippo Pathway
Authors: Alam Maroof , Bouillez Audrey , Tagde Ashujit , Ahmad Rehan , Rajabi Hasan , Maeda Takahiro , Hiraki Masayuki , Suzuki Yozo , Kufe Donald
Published: April 2023

Supplemental Table S1. qRT-PCR Primer Pairs Supplemental Table S2. ChIP Primer Pairs
Figure S1 from Homeobox Transcription Factor NKX2-1 Promotes Cyclin D1 Transcription in Lung Adenocarcinomas
Authors: Harada Masanori , Sakai Satoshi , Ohhata Tatsuya , Kitagawa Kyoko , Mikamo Masashi , Nishimoto Koji , Uchida Chiharu , Niida Hiroyuki , Kotake Yojiro , Sugimura Haruhiko , Suda Takafumi , Kitagawa Masatoshi
Published: April 2023

Expression of NKX2-1 and cyclin D1 in NSCLCs.
Supplementary Table 3 from The Orphan Nuclear Receptor NR4A1 (Nur77) Regulates Oxidative and Endoplasmic Reticulum Stress in Pancreatic Cancer Cells
Authors: Lee Syng-Ook , Jin Un-Ho , Kang Jeong Han , Kim Sang Bae , Guthrie Aaron S. , Sreevalsan Sandeep , Lee Ju-Seog , Safe Stephen
Published: April 2023

PDF file - 125KB, Supplemental Table S3. mRNAs showing differential expression in Panc1 cells by transfection of siNR4A1.
Supplementary Figure Legends from Oncogenic KRAS Targets MUC16/CA125 in Pancreatic Ductal Adenocarcinoma
Authors: Liang Chen , Qin Yi , Zhang Bo , Ji Shunrong , Shi Si , Xu Wenyan , Liu Jiang , Xiang Jinfeng , Liang Dingkong , Hu Qiangsheng , Ni Quanxing , Xu Jin , Yu Xianjun
Published: April 2023

Supplementary Figure Legends 1-4
Supplementary Table 2 from The Orphan Nuclear Receptor NR4A1 (Nur77) Regulates Oxidative and Endoplasmic Reticulum Stress in Pancreatic Cancer Cells
Authors: Lee Syng-Ook , Jin Un-Ho , Kang Jeong Han , Kim Sang Bae , Guthrie Aaron S. , Sreevalsan Sandeep , Lee Ju-Seog , Safe Stephen
Published: April 2023

PDF file - 36KB, Supplemental Table S2. Proteins showing differential expression in Panc1 cells by transfection of siNR4A1.
Supplementary Figure 4 from Oncogenic KRAS Targets MUC16/CA125 in Pancreatic Ductal Adenocarcinoma
Authors: Liang Chen , Qin Yi , Zhang Bo , Ji Shunrong , Shi Si , Xu Wenyan , Liu Jiang , Xiang Jinfeng , Liang Dingkong , Hu Qiangsheng , Ni Quanxing , Xu Jin , Yu Xianjun
Published: April 2023

FBW7 was involved in the expression and shedding of CA125
Supplementary Figure 5 from The Orphan Nuclear Receptor NR4A1 (Nur77) Regulates Oxidative and Endoplasmic Reticulum Stress in Pancreatic Cancer Cells
Authors: Lee Syng-Ook , Jin Un-Ho , Kang Jeong Han , Kim Sang Bae , Guthrie Aaron S. , Sreevalsan Sandeep , Lee Ju-Seog , Safe Stephen
Published: April 2023

PDF file - 50KB, Supplemental Figure S5. Effect of siNR4A2 on induction of apoptosis and ER stress in pancreatic cancer cells.
Supplementary Figure 2 from Oncogenic KRAS Targets MUC16/CA125 in Pancreatic Ductal Adenocarcinoma
Authors: Liang Chen , Qin Yi , Zhang Bo , Ji Shunrong , Shi Si , Xu Wenyan , Liu Jiang , Xiang Jinfeng , Liang Dingkong , Hu Qiangsheng , Ni Quanxing , Xu Jin , Yu Xianjun
Published: April 2023

ERK was involved in c-Myc expression in pancreatic cancer cells
Supplementary Figure 1 from Oncogenic KRAS Targets MUC16/CA125 in Pancreatic Ductal Adenocarcinoma
Authors: Liang Chen , Qin Yi , Zhang Bo , Ji Shunrong , Shi Si , Xu Wenyan , Liu Jiang , Xiang Jinfeng , Liang Dingkong , Hu Qiangsheng , Ni Quanxing , Xu Jin , Yu Xianjun
Published: April 2023

c-Myc overexpression increased the expression and shedding of CA125
Supplementary Figure 2 from The Orphan Nuclear Receptor NR4A1 (Nur77) Regulates Oxidative and Endoplasmic Reticulum Stress in Pancreatic Cancer Cells
Authors: Lee Syng-Ook , Jin Un-Ho , Kang Jeong Han , Kim Sang Bae , Guthrie Aaron S. , Sreevalsan Sandeep , Lee Ju-Seog , Safe Stephen
Published: April 2023

PDF file - 33KB, Supplemental Figure S2. Inactivation of NR4A1 induces DNA fragmentation and ER Ca2+ release in Panc-1 cells.
Supplementary Figure 1 from The Orphan Nuclear Receptor NR4A1 (Nur77) Regulates Oxidative and Endoplasmic Reticulum Stress in Pancreatic Cancer Cells
Authors: Lee Syng-Ook , Jin Un-Ho , Kang Jeong Han , Kim Sang Bae , Guthrie Aaron S. , Sreevalsan Sandeep , Lee Ju-Seog , Safe Stephen
Published: April 2023

PDF file - 75KB, Supplemental Figure S1. Inactivation of NR4A1 induces ER stress and autophagy in vitro and in vivo.
Supplementary Table 1 from The Nuclear Pool of Tetraspanin CD9 Contributes to Mitotic Processes in Human Breast Carcinoma
Authors: Rappa Germana , Green Toni M. , Lorico Aurelio
Published: April 2023

Characteristics of patients with ductal carcinoma of the breast. Nuclear CD9 ratios of patients with different stages of ductal breast carcinomas.
Supp. Figs. 1-12 from Constitutive Activation of DNA Damage Checkpoint Signaling Contributes to Mutant p53 Accumulation via Modulation of p53 Ubiquitination
Authors: Frum Rebecca A. , Love Ian M. , Damle Priyadarshan K. , Mukhopadhyay Nitai D. , Palit Deb Swati , Deb Sumitra , Grossman Steven R.
Published: April 2023

Supplementary figures (1-12) Supplemental Fig. 1. Normalized levels of monoubiquitinated mutant p53 are shown for indicated cell lines analyzed in Fig. 1a. Supplemental Fig. 2. Longer single exposure of p53 blot in Fig. 2a is displayed to demonstrate the relative abundance of monoubiquitinated to native species. Supplemental Fig 3. (a) WI38 cells were transfected with p53-273H and MDM2 for 40- 48 hours later, and plates were treated with 2 μM Dox for 2 hours in the presence or absence of 2 mM caffeine. Caffeine-treated samples were pre-treated with 2 mM caffeine for 20 min prior to addition of Dox. Supplemental Fig. 4. Normalized levels of monoubiquitinated or native mutant p53 from p53-273H-expressing H1299 cells analyzed in Fig. 2c are shown. Supplemental Fig. 5. Normalized levels of monoubiquitinated and native mutant p53, as well as MDM2, are shown for ABC1-shGFP and ABC1-shMDM2 cells analyzed in Fig. 3a. Supplemental Fig. 6. Normalized levels of monoubiquitinated or native mutant p53 are shown from p53-273H-expressing H1299 cells co expressing wt vs. RING mutated MDM2 analyzed in Fig. 3b. Supplemental Fig. 7. Normalized levels of monoubiquitinated or native mutant p53, as well as p53 S15-p, are shown for p53-273H-expressing H1299 cells analyzed in Fig. 4a. Supplemental Fig. 8. Normalized levels of polyubiquitinated p53 mutant p53 are shown for H1048 cells analyzed in Fig. 5b. Supplemental Fig. 9. Normalized levels of polyubiquitinated p53 are shown in p53- 273H-expressing H1299 cells analyzed in Fig. 5c after mock, Dox or Dox+caffeine treatment. Supplemental Fig. 10. (a) H1048 cells were mock-treated or treated with caffeine and/or MG132 for 7 hours and fixed and analyzed by flow cytometry for p53. (b) ABC1 shGFP or shMDM2-expressing cells were treated with or without caffeine, and stained for p53 level by flow cytometry. Supplemental Fig 11. (a) H1975, (b) MDA MB 231, (c) WI38, or d) U2OS cells were mock-treated or treated with caffeine for 7 hours and fixed and analyzed by flow cytometry for p53. Supplemental Fig. 12. The level of total ATM in siATM or control siRNA transfected H1048 cells is shown. Actin was immunoblotted as a loading control.
Supplementary Figure 3 from The Nuclear Pool of Tetraspanin CD9 Contributes to Mitotic Processes in Human Breast Carcinoma
Authors: Rappa Germana , Green Toni M. , Lorico Aurelio
Published: April 2023

MDA, MA-11 and MCF-7 cells do not have a nuclear pool of CD44.
Kundu et al, Supplementary Figure 4 from Heparanase Promotes Glioma Progression and Is Inversely Correlated with Patient Survival
Authors: Kundu Soumi , Xiong Anqi , Spyrou Argyris , Wicher Grzegorz , Marinescu Voichita D. , Edqvist Per-Henrik D. , Zhang Lei , Essand Magnus , Dimberg Anna , Smits Anja , Ilan Neta , Vlodavsky Israel , Li Jin-Ping , Forsberg-Nilsson Karin
Published: April 2023

Kundu et al, Supplementary Figure 4
Kundu et al, Supplementary Figure 3 from Heparanase Promotes Glioma Progression and Is Inversely Correlated with Patient Survival
Authors: Kundu Soumi , Xiong Anqi , Spyrou Argyris , Wicher Grzegorz , Marinescu Voichita D. , Edqvist Per-Henrik D. , Zhang Lei , Essand Magnus , Dimberg Anna , Smits Anja , Ilan Neta , Vlodavsky Israel , Li Jin-Ping , Forsberg-Nilsson Karin
Published: April 2023

Kundu et al, Supplementary Figure 3
Kundu et al, Supplementary Figure 1 from Heparanase Promotes Glioma Progression and Is Inversely Correlated with Patient Survival
Authors: Kundu Soumi , Xiong Anqi , Spyrou Argyris , Wicher Grzegorz , Marinescu Voichita D. , Edqvist Per-Henrik D. , Zhang Lei , Essand Magnus , Dimberg Anna , Smits Anja , Ilan Neta , Vlodavsky Israel , Li Jin-Ping , Forsberg-Nilsson Karin
Published: April 2023

Kundu et al, Supplementary Figure 1
Supplementary Figure S1 from Epigenetic Inactivation and Tumor-Suppressor Behavior of NGFR in Human Colorectal Cancer
Authors: Yang Zuli , Chen Hao , Huo Lijun , Yang Zihuan , Bai Yang , Fan Xinjuan , Ni Beibei , Fang Lekun , Hu Jun , Peng Junsheng , Wang Lei , Wang Jianping
Published: April 2023

Supplementary Figure S1. Methylation status of p75NGFR in human CRC samples. Results of the methylation status of p75NGFR in the all 38 CRC samples are shown. N, normal tissue; T, tumour tissue. M, Methylated; U, Unmethylated.
Supplementary Figures 1-3 from Extracellular Fatty Acids Are the Major Contributor to Lipid Synthesis in Prostate Cancer
Authors: Balaban Seher , Nassar Zeyad D. , Zhang Alison Y. , Hosseini-Beheshti Elham , Centenera Margaret M. , Schreuder Mark , Lin Hui-Ming , Aishah Atqiya , Varney Bianca , Liu-Fu Frank , Lee Lisa S. , Nagarajan Shilpa R. , Shearer Robert F. , Hardie Rae-Anne , Raftopulos Nikki L. , Kakani Meghna S. , Saunders Darren N. , Holst Jeff , Horvath Lisa G. , Butler Lisa M. , Hoy Andrew J.
Published: April 2023

S1: Pretreatment of PC-3 and C4-2B cells with a FA Mix alters the response to palmitate lipotoxicity and serum-starvation. S2: Dose response assessment of palmitate supplementation on cell viability. S3: Pretreatment with the DGAT1 inhibitor AZD3988 does not affect PC-3 cell growth.
Supplementary Tables1-4 from The Notch Pathway Promotes Osteosarcoma Progression through Activation of Ephrin Reverse Signaling
Authors: Yu Ling , Xia Kezhou , Gao Tian , Chen Jingteng , Zhang Zhengpei , Sun Xiangran , Simões Bruno M. , Eyre Rachel , Fan Zhengfu , Guo Weichun , Clarke Robert B.
Published: April 2023

Supplementary Table S1: Clinicopathological features of osteosarcoma patients Supplementary Table S2: Primer sequences used for Quantitative PCR Supplementary Table S3: Primers used for ChIP experiments Supplementary Table S4: Tumor forming ability following subcutaneous injections
Supplementary Table S2 from Histone H3.3K27M Mobilizes Multiple Cancer/Testis (CT) Antigens in Pediatric Glioma
Authors: Deng Houliang , Zeng Jianming , Zhang Ting , Gong Longcai , Zhang Hongjie , Cheung Edwin , Jones Chris , Li Gang
Published: April 2023

Results of VCX3A immunohistochemical staining of tissue microarray samples of pediatric high-grade gliomas.
Supplementary Figure Legends, Figures S1 - S6 from Histone H3.3K27M Mobilizes Multiple Cancer/Testis (CT) Antigens in Pediatric Glioma
Authors: Deng Houliang , Zeng Jianming , Zhang Ting , Gong Longcai , Zhang Hongjie , Cheung Edwin , Jones Chris , Li Gang
Published: April 2023

Supplementary Figure S1. H3.3K27M activates cancer/testis (CT) antigens in SF-188 cell line; Supplementary Figure S2. The putative CpGislands in the human VCX3A locus; Supplementary Figure S3. The genomic sequence of human glyceraldehyde 3-phosphate dehydrogenase (GAPDH), and an intragenic CpG rich region of GAPDH (S3A). No change in intragenic CpG methylation of GAPDH in Res259 cells carrying H3.3K27M (S3B); Supplementary Figure S4. Subcellular localization of VCX3A/B in Res259 cells; Supplementary Figure S5. The different isoforms of VCX3A/B cause similar gene expression changes; Supplementary Figure S6. The mRNA expression of HLA-A, -B, E, F and G in Res259 cells stably expressing H3.3K27M or empty vector.
Supplementary Table S1 from IL8 Expression Is Associated with Prostate Cancer Aggressiveness and Androgen Receptor Loss in Primary and Metastatic Prostate Cancer
Authors: Maynard Janielle P. , Ertunc Onur , Kulac Ibrahim , Baena-Del Valle Javier A. , De Marzo Angelo M. , Sfanos Karen S.
Published: April 2023

Patient characteristics for whole tissue sections, 120 case TMA set, and autopsy TMA set.
Supplementary Figure S7 from IL8 Expression Is Associated with Prostate Cancer Aggressiveness and Androgen Receptor Loss in Primary and Metastatic Prostate Cancer
Authors: Maynard Janielle P. , Ertunc Onur , Kulac Ibrahim , Baena-Del Valle Javier A. , De Marzo Angelo M. , Sfanos Karen S.
Published: April 2023

Supplementary Figure S7 shows IL-8 western blot and RISH on LPS treated PC3 and DU145 cells and LNCaP cells with or without enzalutamide treatment.
Supplementary Figure S2 from IL8 Expression Is Associated with Prostate Cancer Aggressiveness and Androgen Receptor Loss in Primary and Metastatic Prostate Cancer
Authors: Maynard Janielle P. , Ertunc Onur , Kulac Ibrahim , Baena-Del Valle Javier A. , De Marzo Angelo M. , Sfanos Karen S.
Published: April 2023

Supplementary Figure S2 shows quantification of IL-8 expression by RISH in whole tissue sections and TMAs by tumor grade and race.
Supplementary Figure S1 from IL8 Expression Is Associated with Prostate Cancer Aggressiveness and Androgen Receptor Loss in Primary and Metastatic Prostate Cancer
Authors: Maynard Janielle P. , Ertunc Onur , Kulac Ibrahim , Baena-Del Valle Javier A. , De Marzo Angelo M. , Sfanos Karen S.
Published: April 2023

Supplementary Figure S1 shows positive and negative controls for IL-1B, IL-6, IL-8, and IL-10 RISH and a comparison of IL-8 IHC versus IL-8 RISH.
Supplementary Figures 1 - 7 from Novel YAP1 Activator, Identified by Transcription-Based Functional Screen, Limits Multiple Myeloma Growth
Authors: Maruyama Junichi , Inami Kazutoshi , Michishita Fumiyoshi , Jiang Xinliang , Iwasa Hiroaki , Nakagawa Kentaro , Ishigami-Yuasa Mari , Kagechika Hiroyuki , Miyamura Norio , Hirayama Jun , Nishina Hiroshi , Nogawa Daichi , Yamamoto Kouhei , Hata Yutaka
Published: April 2023

Supplementary Figures 1 - 7
Supplementary Figures Tables from SMARCB1 Deficiency Integrates Epigenetic Signals to Oncogenic Gene Expression Program Maintenance in Human Acute Myeloid Leukemia
Authors: Chatterjee Shankha Subhra , Biswas Mayukh , Boila Liberalis Debraj , Banerjee Debasis , Sengupta Amitava
Published: April 2023

Figure S1. ChIP-seq distribution in primary AML cells. Figure S2. ChIP-seq distribution in SWI/SNF-expressing primary, normal hematopoietic nuclear cells. Figure S3. Effects of loss of SMARCB1 in different cells. Figure S4. Expression and co-immunoprecipitation analyses in SMARCB1 loss of function cells. Figure S5. ChIP-qPCR and survival analysis in SMARCB1-deficient cells. Table S1 Characteristics of AML patients Table S2. Characteristics of age-matched controls Table S3 List of RT-qPCR & Methylation specific PCR primers Table S4. List of Antibodies Table S5. List of ChIP-qPCR primers
Supplementary ChIP-seq_P values of Venn diagram genes from SMARCB1 Deficiency Integrates Epigenetic Signals to Oncogenic Gene Expression Program Maintenance in Human Acute Myeloid Leukemia
Authors: Chatterjee Shankha Subhra , Biswas Mayukh , Boila Liberalis Debraj , Banerjee Debasis , Sengupta Amitava
Published: April 2023

Supplementary ChIP-seq_P values of Venn diagram genes
Figure S3 from Somatic Hypermutation of the YAP Oncogene in a Human Cutaneous Melanoma
Authors: Zhang Xiaomeng , Tang Jian Zhong , Vergara Ismael A. , Zhang Youfang , Szeto Pacman , Yang Lie , Mintoff Christopher , Colebatch Andrew , McIntosh Lachlan , Mitchell Katrina A. , Shaw Evangeline , Rizos Helen , Long Georgina V. , Hayward Nicholas , McArthur Grant A. , Papenfuss Anthony T. , Harvey Kieran F. , Shackleton Mark
Published: April 2023

Correlation between mRNA expression and copy number (CN) in the 10 most commonly deleted Hippo pathway genes
Supplementary Data from Targeting IDH1 as a Prosenescent Therapy in High-grade Serous Ovarian Cancer
Authors: Dahl Erika S. , Buj Raquel , Leon Kelly E. , Newell Jordan M. , Imamura Yuka , Bitler Benjamin G. , Snyder Nathaniel W. , Aird Katherine M.
Published: April 2023

Compiled Supplementary Data File
Supplementary Tables 1-9 from Centrosome Linker–induced Tetraploid Segregation Errors Link Rhabdoid Phenotypes and Lethal Colorectal Cancers
Authors: Remo Andrea , Manfrin Erminia , Parcesepe Pietro , Ferrarini Alberto , Han Hye Seung , Mickys Ugnius , Laudanna Carmelo , Simbolo Michele , Malanga Donatella , Oliveira Duarte Mendes , Baritono Elisabetta , Colangelo Tommaso , Sabatino Lina , Giuliani Jacopo , Molinari Enrico , Garonzi Marianna , Xumerle Luciano , Delledonne Massimo , Giordano Guido , Ghimenton Claudio , Lonardo Fortunato , D'angelo Fulvio , Grillo Federica , Mastracci Luca , Viglietto Giuseppe , Ceccarelli Michele , Colantuoni Vittorio , Scarpa Aldo , Pancione Massimo
Published: April 2023

Supplementary Table 1. Clinicopathological, immunohistochemical and molecular features of the 12 rhabdoid colorectal cancers7 Supplementary Table 2. Somatic mutations of candidate genes (15 out of 20 are reported) shared by the two rhabdoid cancers at exome sequencing Supplementary Table 3. Rhabdoid colorectal cancers (RC): molecular alterations, centrosome aberrations and ploidy Supplementary Table 4. Rhabdoid tumours of infants (RI): molecular alterations, centrosome aberrations, and ploidy Supplementary Table 5: Clinicopathologic and molecular features of classical colorectal cancers analyzed Supplementary Table 6. Sequencing and Reverse transcription PCR primers Supplementary Table 6B. SMARCB1 regions covered by the custom panel used for next-generation target sequencing Supplementary Table 7. CROCC regions covered by the custom panel used for next-generation targeted sequencing Supplementary Table 8. Antibodies employed and working conditions for immunohistochemistry, immunofluorescence or western blot analysis of tissues and cell lines Supplementary Table 9. Rhabdoid colorectal cancer reported in literature between 1993-2015
Figure S3 from Targeting IDH1 as a Prosenescent Therapy in High-grade Serous Ovarian Cancer
Authors: Dahl Erika S. , Buj Raquel , Leon Kelly E. , Newell Jordan M. , Imamura Yuka , Bitler Benjamin G. , Snyder Nathaniel W. , Aird Katherine M.
Published: April 2023

Knockdown of IDH1 does not alter the NADPH/NADP+ ratio or lipid biosynthesis of HGSC cells. Related to Figure 2.
Figure S2 from Targeting IDH1 as a Prosenescent Therapy in High-grade Serous Ovarian Cancer
Authors: Dahl Erika S. , Buj Raquel , Leon Kelly E. , Newell Jordan M. , Imamura Yuka , Bitler Benjamin G. , Snyder Nathaniel W. , Aird Katherine M.
Published: April 2023

Glycolytic and PPP metabolites in HGSC cells compared to FT cells; increased expression of TCA cycle enzymes PDK1 and SUCLG2 do not decrease progression-free survival of HGSC patients. Related to Figure 1.
Supplementary Table 1 from ELF4 Is a Target of miR-124 and Promotes Neuroblastoma Proliferation and Undifferentiated State
Authors: Kosti Adam , Du Liqin , Shivram Haridha , Qiao Mei , Burns Suzanne , Garcia Juan Gabriel , Pertsemlidis Alexander , Iyer Vishwanath R. , Kokovay Erzsebet , Penalva Luiz O.F.
Published: April 2023

Table S1. Cherry picker siRNA list and Primer pairs utilized for qRT-PCR.
Table S2 from Thymidine Kinase 1 Loss Confers Trifluridine Resistance without Affecting 5-Fluorouracil Metabolism and Cytotoxicity
Authors: Edahiro Keitaro , Iimori Makoto , Kobunai Takashi , Morikawa-Ichinose Tomomi , Miura Daisuke , Kataoka Yuki , Niimi Shinichiro , Wakasa Takeshi , Saeki Hiroshi , Oki Eiji , Kitao Hiroyuki , Maehara Yoshihiko
Published: April 2023

IC50 concentration of FTD in siRNA-treated DLD1 cells.
Supplementary Table S2 from O-GlcNAcylation Enhances Double-Strand Break Repair, Promotes Cancer Cell Proliferation, and Prevents Therapy-Induced Senescence in Irradiated Tumors
Authors: Efimova Elena V. , Appelbe Oliver K. , Ricco Natalia , Lee Steve S.-Y. , Liu Yue , Wolfgeher Donald J. , Collins Tamica N. , Flor Amy C. , Ramamurthy Aishwarya , Warrington Sara , Bindokas Vytautas P. , Kron Stephen J.
Published: April 2023

Heatmap and Reactome pathway proteomic data
Figure S3 from Thymidine Kinase 1 Loss Confers Trifluridine Resistance without Affecting 5-Fluorouracil Metabolism and Cytotoxicity
Authors: Edahiro Keitaro , Iimori Makoto , Kobunai Takashi , Morikawa-Ichinose Tomomi , Miura Daisuke , Kataoka Yuki , Niimi Shinichiro , Wakasa Takeshi , Saeki Hiroshi , Oki Eiji , Kitao Hiroyuki , Maehara Yoshihiko
Published: April 2023

Generation of TK1 knockout DLD1 cells by CRISPR/Cas9 genome editing.
Table S2 from Multi-omics Approach Reveals Distinct Differences in Left- and Right-Sided Colon Cancer
Authors: Hu Wangxiong , Yang Yanmei , Li Xiaofen , Huang Minran , Xu Fei , Ge Weiting , Zhang Suzhan , Zheng Shu
Published: April 2023

Supplementary table2 Differentially methylated regions identified by bumphunter
Figure S1 from Multi-omics Approach Reveals Distinct Differences in Left- and Right-Sided Colon Cancer
Authors: Hu Wangxiong , Yang Yanmei , Li Xiaofen , Huang Minran , Xu Fei , Ge Weiting , Zhang Suzhan , Zheng Shu
Published: April 2023

IHC staining of selected LCC (A~C) and RCC (D~F) of PRAC
Supplementary Figure S5 from Cigarette Smoke Induces Metabolic Reprogramming of the Tumor Stroma in Head and Neck Squamous Cell Carcinoma
Authors: Domingo-Vidal Marina , Whitaker-Menezes Diana , Martos-Rus Cristina , Tassone Patrick , Snyder Christopher M. , Tuluc Madalina , Philp Nancy , Curry Joseph , Martinez-Outschoorn Ubaldo
Published: April 2023

Figure S5 shows the tumor growth curves from both xenograft models, and the weights of tumors collected at an early time point. It also shows immunohistochemistry images and quantification of CD45 and CD68 staining on FaDu tumors.
Supplementary Figure S4 from Cigarette Smoke Induces Metabolic Reprogramming of the Tumor Stroma in Head and Neck Squamous Cell Carcinoma
Authors: Domingo-Vidal Marina , Whitaker-Menezes Diana , Martos-Rus Cristina , Tassone Patrick , Snyder Christopher M. , Tuluc Madalina , Philp Nancy , Curry Joseph , Martinez-Outschoorn Ubaldo
Published: April 2023

Figure S4 shows a proliferation assay of carcinoma cells co-cultured with CTRL- and CSE-fibroblasts.
Supplementary Figure S3 from Cigarette Smoke Induces Metabolic Reprogramming of the Tumor Stroma in Head and Neck Squamous Cell Carcinoma
Authors: Domingo-Vidal Marina , Whitaker-Menezes Diana , Martos-Rus Cristina , Tassone Patrick , Snyder Christopher M. , Tuluc Madalina , Philp Nancy , Curry Joseph , Martinez-Outschoorn Ubaldo
Published: April 2023

Figure S3 shows immunofluorescence images of MCT1 expression in fibroblasts and carcinoma cell co-cultures. It also shows flow cytometry data of MCT1 and TOMM20 expression in carcinoma cells exposed to conditioned media from fibroblasts.
Figure S4 from Genotoxic Damage Activates the AMPK-α1 Isoform in the Nucleus via Ca2+/CaMKK2 Signaling to Enhance Tumor Cell Survival
Authors: Vara-Ciruelos Diana , Dandapani Madhumita , Gray Alexander , Egbani Ejaife O. , Evans A. Mark , Hardie D. Grahame
Published: April 2023

Supplementary Figure S4: Clonogenic survival of G361 cells treated with or without A23187 prior to etoposide.
Supplementary Figure S2 from Cigarette Smoke Induces Metabolic Reprogramming of the Tumor Stroma in Head and Neck Squamous Cell Carcinoma
Authors: Domingo-Vidal Marina , Whitaker-Menezes Diana , Martos-Rus Cristina , Tassone Patrick , Snyder Christopher M. , Tuluc Madalina , Philp Nancy , Curry Joseph , Martinez-Outschoorn Ubaldo
Published: April 2023

Figure S2 shows the effects of the antioxidant NAC on cell viability and MCT4 and TIGAR expression in CTRL- and CSE-BJ1.
Figure S3 from Genotoxic Damage Activates the AMPK-α1 Isoform in the Nucleus via Ca2+/CaMKK2 Signaling to Enhance Tumor Cell Survival
Authors: Vara-Ciruelos Diana , Dandapani Madhumita , Gray Alexander , Egbani Ejaife O. , Evans A. Mark , Hardie D. Grahame
Published: April 2023

Supplementary Figure S3: Low concentrations of etoposide activates nuclear AMPK in HEK-293 cells with DNA damage.
Figure S1 from Genotoxic Damage Activates the AMPK-α1 Isoform in the Nucleus via Ca2+/CaMKK2 Signaling to Enhance Tumor Cell Survival
Authors: Vara-Ciruelos Diana , Dandapani Madhumita , Gray Alexander , Egbani Ejaife O. , Evans A. Mark , Hardie D. Grahame
Published: April 2023

Supplementary Figure S1: Etoposide activates AMPK in the nucleus
Figure S6 from The Antitumor Drugs Trabectedin and Lurbinectedin Induce Transcription-Dependent Replication Stress and Genome Instability
Authors: Tumini Emanuela , Herrera-Moyano Emilia , San Martín-Alonso Marta , Barroso Sonia , Galmarini Carlos M. , Aguilera Andrés
Published: April 2023

Rad52 foci and protein level in yeast overexpressing RNase H1 after treatment with trabectedin or lurbinectedin
Figure S4 from The Antitumor Drugs Trabectedin and Lurbinectedin Induce Transcription-Dependent Replication Stress and Genome Instability
Authors: Tumini Emanuela , Herrera-Moyano Emilia , San Martín-Alonso Marta , Barroso Sonia , Galmarini Carlos M. , Aguilera Andrés
Published: April 2023

EdU incorporation in trabectedin-treated cells after transcription inhibition
Figure S3 from The Antitumor Drugs Trabectedin and Lurbinectedin Induce Transcription-Dependent Replication Stress and Genome Instability
Authors: Tumini Emanuela , Herrera-Moyano Emilia , San Martín-Alonso Marta , Barroso Sonia , Galmarini Carlos M. , Aguilera Andrés
Published: April 2023

RNA-DNA hybrids immunofluorescence after trabectedin or lurbinectedin treatment
Figure S2 from The Antitumor Drugs Trabectedin and Lurbinectedin Induce Transcription-Dependent Replication Stress and Genome Instability
Authors: Tumini Emanuela , Herrera-Moyano Emilia , San Martín-Alonso Marta , Barroso Sonia , Galmarini Carlos M. , Aguilera Andrés
Published: April 2023

FANCD2 foci accumulation in neocarzinostatin-treated cells
Supplementary Figures S1 - S2 from ERβ Sensitizes NSCLC to Chemotherapy by Regulating DNA Damage Response
Authors: Nikolos Fotis , Thomas Christoforos , Bado Igor , Gustafsson Jan-Åke
Published: April 2023

Supplementary Figure S1. Kaplan-Meier curve showing survival in chemotherapy-treated NSCLC patients with high (ESR2high) and low (ESR2low) expression of ERβ1 (logrank, P=0.036). Supplementary Figure S2. mRNA levels of p63 in control and ERβ1-expressing H1299, H358, H661 and H1944 NSCLC cells.
Figure S1 from The Antitumor Drugs Trabectedin and Lurbinectedin Induce Transcription-Dependent Replication Stress and Genome Instability
Authors: Tumini Emanuela , Herrera-Moyano Emilia , San Martín-Alonso Marta , Barroso Sonia , Galmarini Carlos M. , Aguilera Andrés
Published: April 2023

53BP1 foci after trabectedin treatment in RNase H1-overexpressing cells
Supplementary Table S1 from Association of USP10 with G3BP2 Inhibits p53 Signaling and Contributes to Poor Outcome in Prostate Cancer
Authors: Takayama Ken-ichi , Suzuki Takashi , Fujimura Tetsuya , Takahashi Satoru , Inoue Satoshi
Published: April 2023

Supplementary Table S1. Association of USP10 expression with clinical parameters, AR and G3BP2 expression
Supplementary Figure S5 from Association of USP10 with G3BP2 Inhibits p53 Signaling and Contributes to Poor Outcome in Prostate Cancer
Authors: Takayama Ken-ichi , Suzuki Takashi , Fujimura Tetsuya , Takahashi Satoru , Inoue Satoshi
Published: April 2023

Supplementary Figure S5. High expression of G3BP2 is a prognostic factor of prostate cancer patients.
Supplementary Figure S3 from Association of USP10 with G3BP2 Inhibits p53 Signaling and Contributes to Poor Outcome in Prostate Cancer
Authors: Takayama Ken-ichi , Suzuki Takashi , Fujimura Tetsuya , Takahashi Satoru , Inoue Satoshi
Published: April 2023

Supplementary Figure S3. USP10-mediated oncogenic function is observed in cell with high G3BP2 expression.
Table S1 from BRCA1 through Its E3 Ligase Activity Regulates the Transcription Factor Oct1 and Carbohydrate Metabolism
Authors: Vázquez-Arreguín Karina , Maddox Jessica , Kang Jinsuk , Park Dongju , Cano Reuben R. , Factor Rachel E. , Ludwig Thomas , Tantin Dean
Published: April 2023

Original and normalized GC-MS metabolite readings from control and BRCA1-I26A mutant MEFs.
Supplementary Figure S1 from Association of USP10 with G3BP2 Inhibits p53 Signaling and Contributes to Poor Outcome in Prostate Cancer
Authors: Takayama Ken-ichi , Suzuki Takashi , Fujimura Tetsuya , Takahashi Satoru , Inoue Satoshi
Published: April 2023

Supplementary Figure S1. USP10 is regulated by AR binding in VCaP cells.
Figures S1-S13 from BRCA1 through Its E3 Ligase Activity Regulates the Transcription Factor Oct1 and Carbohydrate Metabolism
Authors: Vázquez-Arreguín Karina , Maddox Jessica , Kang Jinsuk , Park Dongju , Cano Reuben R. , Factor Rachel E. , Ludwig Thomas , Tantin Dean
Published: April 2023

Supp. Figure S1 Differential metabolite levels in BRCA1 I26A compared to normal MEFs. Supp. Figure S2 Control immunofluorescence microscopy images using Oct1-deficient MEFs. Supp. Figure S3 Small increase in Oct1 proteins levels in MEFs with a C-terminal BRCA1 mutation. Supp. Figure S4 Equivalent infection rates in Oct1 and control CRISPR infection rates in BRCA1-I26A MEFs. Supp. Figure S5 Quality-control and validation of RNAseq. Supp. Figure S6 CRISPR-mediated Oct1 loss in either BRCA1-I26A MEFs or MCF-7 cells minimally affects HIF-1α and c-Myc levels. Supp. Figure S7 Equivalent infection rates in Oct1 and control CRISPR infection rates in MCF-7 cells. Supp. Figure S8 MG-132 treatment reveals ubiquitylated Oct1 bands in the presence of urea. Supp. Figure S9 O2 consumption rate (OCR) was assessed in MCF-7 cells transduced with either empty vector control (EV), or viruses expressing WT or K9/403R Oct1. Supp. Figure S10 Oct1 protein stability in WT and I26A MEFs. Supp. Figure S11 Immunoprecipitating in vitro ubiquitylation assay products with control rabbit IgG antibodies results in recovery of background ubiquitylation. Supp. Figure S12 The same as in Figure 6A except with individual datapoints (Supplemental Table S4) superimposed. Supp. Figure S13 Elevated Oct1 (Pou2f1) mRNA levels correlate with poor patient outcome in gastric but not breast cancer.
Supplementary Table 1 from Epigenetic Regulation of Dlg1, via Kaiso, Alters Mitotic Spindle Polarity and Promotes Intestinal Tumorigenesis
Authors: Young Madeleine A. , May Stephanie , Damo Angelos , Yoon Young So , Hur Man-Wook , Swat Wojiech , Parry Lee
Published: April 2023

Top 50 differential expressed genes in the Kaiso-/y intestine versus WT.
All Supplementary Data from Recognition of Recurrent Protein Expression Patterns in Pediatric Acute Myeloid Leukemia Identified New Therapeutic Targets
Authors: Hoff Fieke W. , Hu Chenyue W. , Qiu Yihua , Ligeralde Andrew , Yoo Suk-Young , Mahmud Hasan , de Bont Eveline S.J.M. , Qutub Amina A. , Horton Terzah M. , Kornblau Steven M.
Published: April 2023

Supplementary Table S1. Treatment protocols pediatric AML patients. Supplemental Table S2: Patient characteristics for the 73 pediatric acute lymphoblastic leukemia patients Supplementary Table S3. This table contains the "Rosetta Stone" for the antibody and protein nomenclature (HUGO, MiMI, GeneCards) together with the RPPA staining details. Supplementary Table S4. Protein membership for the 31 defined protein functional groups. Supplementary Table S5. AML protein constellation membership for the 136 protein clusters. Supplementary Table S6. This table shows the univariate and multivariate Cox Proportional Hazard Model Supplementary Table S7. The combined ALL and AML protein constellation membership for the 142 protein clusters. Supplementary Table S8. Protein cluster membership for the leukemic cell lines. Supplementary Figure S1: The co-occurrence probability matrices for the ''Hypoxia'' PFG and the PFG ''CREB''. Supplementary Fig. S2. Principal component analysis for the 95 pediatric acute myeloid leukemia samples stratified by source; peripheral blood (PB) samples or bone marrow samples (BM). Supplementary Figure S3: Unsupervised hierarchical clustering for all 95 AML patient samples. Supplementary Figure S4. The minimal set of 30 antibodies that enable classification into the defined protein expression signatures. Supplementary Figure S5. (A) Unsupervised hierarchical clustering (Ward linkage) for all mycoplasma negative cell lines samples (N=95) and the 95 acute myeloid leukemia patient samples.
Supplementary Figure 5 from Epigenetic Regulation of Dlg1, via Kaiso, Alters Mitotic Spindle Polarity and Promotes Intestinal Tumorigenesis
Authors: Young Madeleine A. , May Stephanie , Damo Angelos , Yoon Young So , Hur Man-Wook , Swat Wojiech , Parry Lee
Published: April 2023

Intestinal samples from Dlg1ï�„IEC/ï�„IEC (black bars) show significantly reduced Dlg1 expression compared to Wildtype (grey bars), but there is no significant changes in expression levels of other Dlg family members.
Supplementary Figure S7 from Functional Toll-like Receptor 4 Overexpression in Papillary Thyroid Cancer by MAPK/ERK–Induced ETS1 Transcriptional Activity
Authors: Peyret Victoria , Nazar Magalí , Martín Mariano , Quintar Amado A. , Fernandez Elmer A. , Geysels Romina C. , Fuziwara Cesar S. , Montesinos María M. , Maldonado Cristina A. , Santisteban Pilar , Kimura Edna T. , Pellizas Claudia G. , Nicola Juan P. , Masini-Repiso Ana M.
Published: April 2023

ETS family member ETS1 showed the highest correlation with TLR4 mRNA expression in PTCs.
Supplementary Figure 3 from Epigenetic Regulation of Dlg1, via Kaiso, Alters Mitotic Spindle Polarity and Promotes Intestinal Tumorigenesis
Authors: Young Madeleine A. , May Stephanie , Damo Angelos , Yoon Young So , Hur Man-Wook , Swat Wojiech , Parry Lee
Published: April 2023

The loss of Dlg1 is tolerated by the small intestinal epithelium. Comparing WT and Dlg1ï�„IEC/ï�„IEC at death indicated there were no significant changes in (A) cellular height of crypt, number of apoptotic (B) and mitotic (C) bodies per 50 half crypts.
Supplementary Figure S6 from Functional Toll-like Receptor 4 Overexpression in Papillary Thyroid Cancer by MAPK/ERK–Induced ETS1 Transcriptional Activity
Authors: Peyret Victoria , Nazar Magalí , Martín Mariano , Quintar Amado A. , Fernandez Elmer A. , Geysels Romina C. , Fuziwara Cesar S. , Montesinos María M. , Maldonado Cristina A. , Santisteban Pilar , Kimura Edna T. , Pellizas Claudia G. , Nicola Juan P. , Masini-Repiso Ana M.
Published: April 2023

Etsd binding site is crucial for TLR4 gene transcription in response to conditionally induced HRasG12V and RET/PTC3 signaling.
Supplementary Figure 1 from Epigenetic Regulation of Dlg1, via Kaiso, Alters Mitotic Spindle Polarity and Promotes Intestinal Tumorigenesis
Authors: Young Madeleine A. , May Stephanie , Damo Angelos , Yoon Young So , Hur Man-Wook , Swat Wojiech , Parry Lee
Published: April 2023

Relative expression analysis indicated no significant alteration to Wnt target genes expression in the intestine of the Kaiso deficient mouse. Graph of the dCt values for the fold expression change data in Fig. 1.
Supplementary Figure S3 from Functional Toll-like Receptor 4 Overexpression in Papillary Thyroid Cancer by MAPK/ERK–Induced ETS1 Transcriptional Activity
Authors: Peyret Victoria , Nazar Magalí , Martín Mariano , Quintar Amado A. , Fernandez Elmer A. , Geysels Romina C. , Fuziwara Cesar S. , Montesinos María M. , Maldonado Cristina A. , Santisteban Pilar , Kimura Edna T. , Pellizas Claudia G. , Nicola Juan P. , Masini-Repiso Ana M.
Published: April 2023

Correlation between TLR4 mRNA expression and ERK score in PTCs.
Supplementary Table 4 from Adaptive Protein Translation by the Integrated Stress Response Maintains the Proliferative and Migratory Capacity of Lung Adenocarcinoma Cells
Authors: Albert Alexandra E. , Adua Sally J. , Cai Wesley L. , Arnal-Estapé Anna , Cline Gary W. , Liu Zongzhi , Zhao Minghui , Cao Paul D. , Mariappan Malaiyalam , Nguyen Don X.
Published: April 2023

Supplementary Table 4 list the results from Reverse phase protein array analysis of LUAD cells treated with ISRIB during asparagine deprivation.
Supplementary Figure S2 from Functional Toll-like Receptor 4 Overexpression in Papillary Thyroid Cancer by MAPK/ERK–Induced ETS1 Transcriptional Activity
Authors: Peyret Victoria , Nazar Magalí , Martín Mariano , Quintar Amado A. , Fernandez Elmer A. , Geysels Romina C. , Fuziwara Cesar S. , Montesinos María M. , Maldonado Cristina A. , Santisteban Pilar , Kimura Edna T. , Pellizas Claudia G. , Nicola Juan P. , Masini-Repiso Ana M.
Published: April 2023

TLR4 protein expression in differentiated thyroid carcinomas.
Supplementary Figure S1 from Functional Toll-like Receptor 4 Overexpression in Papillary Thyroid Cancer by MAPK/ERK–Induced ETS1 Transcriptional Activity
Authors: Peyret Victoria , Nazar Magalí , Martín Mariano , Quintar Amado A. , Fernandez Elmer A. , Geysels Romina C. , Fuziwara Cesar S. , Montesinos María M. , Maldonado Cristina A. , Santisteban Pilar , Kimura Edna T. , Pellizas Claudia G. , Nicola Juan P. , Masini-Repiso Ana M.
Published: April 2023

TLR4 is overexpressed in differentiated thyroid carcinomas.
Supplementary Figures and Legends from Semaphorin 4C Promotes Macrophage Recruitment and Angiogenesis in Breast Cancer
Authors: Yang Jie , Zeng Zhen , Qiao Long , Jiang Xuefeng , Ma Jingjing , Wang Junnai , Ye Shuangmei , Ma Quanfu , Wei Juncheng , Wu Mingfu , Huang Xiaoyuan , Ma Ding , Gao Qinglei
Published: April 2023

S1. Apoptosis detected by TUNEL in MDA-MB-231 cells expressing shSEMA4C or EV. S2. Sema4C cDNA re-expressed in these MDA-MB-231 siSEMA4C cells could recover cell growth and ANG and CSF secretion. S3. Expression of senescence-associated pathway proteins in MDA-MB-231 cells were examined using western blot post-transfection at the indicated time. S4. SEMA4C regulates angiogenesis. S5. The vascular integrity was detected in EV tumours and shSEMA4C tumours. S6. Sections from tumors were immunostained with anti-cd45 (white arrowhead) or F4/80(black arrow) antibody. S7. SEMA4C regulates macrophage recruitment. S8. The vascular density and macrophage area were detected in EV tumours and shSEMA4C tumours at the same weight. S9. Recombinant soluble Sema4C did not affect MDA-MB-231 proliferation and endothelial cells tube formation despite could increase macrophages migration. S10. mRNA levels of ANG and CSF were analyzed in presence of siSEMA4C RNA or sema4C cDNA in MDA-MB-231cells. S11. Expression of mRNA(A) and secreted protein(B) level of ANG and CSF-1 were detected in the MCF-7 cells overexpressing SEMA4C. S12. The growth curve and cell cycle were detected in presence of siANG in MDA-MB-231 cells.
Supplementary Table 1 from Adaptive Protein Translation by the Integrated Stress Response Maintains the Proliferative and Migratory Capacity of Lung Adenocarcinoma Cells
Authors: Albert Alexandra E. , Adua Sally J. , Cai Wesley L. , Arnal-Estapé Anna , Cline Gary W. , Liu Zongzhi , Zhao Minghui , Cao Paul D. , Mariappan Malaiyalam , Nguyen Don X.
Published: April 2023

Supplementary Table 1 shows Gene ontology analysis of ATF4 target genes up-regulated in late stage LUADs.
Supplementary Data legends from Adaptive Protein Translation by the Integrated Stress Response Maintains the Proliferative and Migratory Capacity of Lung Adenocarcinoma Cells
Authors: Albert Alexandra E. , Adua Sally J. , Cai Wesley L. , Arnal-Estapé Anna , Cline Gary W. , Liu Zongzhi , Zhao Minghui , Cao Paul D. , Mariappan Malaiyalam , Nguyen Don X.
Published: April 2023

This file list contains the legends for supplementary Figures and tables.
Table S1 from Desmoplastic Infantile Ganglioglioma/Astrocytoma (DIG/DIA) Are Distinct Entities with Frequent BRAFV600 Mutations
Authors: Wang Anthony C. , Jones David T.W. , Abecassis Isaac Joshua , Cole Bonnie L. , Leary Sarah E.S. , Lockwood Christina M. , Chavez Lukas , Capper David , Korshunov Andrey , Fallah Aria , Wang Shelly , Ene Chibawanye , Olson James M. , Geyer J. Russell , Holland Eric C. , Lee Amy , Ellenbogen Richard G. , Ojemann Jeffrey G.
Published: April 2023

SCH Clinical and Sequencing Data
Figure S6 from Adaptive Protein Translation by the Integrated Stress Response Maintains the Proliferative and Migratory Capacity of Lung Adenocarcinoma Cells
Authors: Albert Alexandra E. , Adua Sally J. , Cai Wesley L. , Arnal-Estapé Anna , Cline Gary W. , Liu Zongzhi , Zhao Minghui , Cao Paul D. , Mariappan Malaiyalam , Nguyen Don X.
Published: April 2023

This figure shows that Cyclin B1 protein synthesis is regulated by ASNS in LUAD cells under stress.
Figure S5 from Adaptive Protein Translation by the Integrated Stress Response Maintains the Proliferative and Migratory Capacity of Lung Adenocarcinoma Cells
Authors: Albert Alexandra E. , Adua Sally J. , Cai Wesley L. , Arnal-Estapé Anna , Cline Gary W. , Liu Zongzhi , Zhao Minghui , Cao Paul D. , Mariappan Malaiyalam , Nguyen Don X.
Published: April 2023

This figure shows that ASNS-mediated protein translation is sufficient for adaptive cell proliferation and migration.