bluuebunny/crossref_metadata_2025 huggingface dataset:
The oblique triangle configuration of three parallel screws for femoral neck fracture fixation using computer-aided design modules
Authors: Zhang Ru Yi , Li Jian Tao , Zhao Jing Xin , Zhao Zhe , Zhang Li Cheng , Yun Cai , Su Xiu Yun , Tang Pei Fu
Published: January 2022

Closed reduction and internal fixation with three cannulated compression screws is a common method for treating femoral neck fractures in young and middle-aged patients. Protocols including the inverted triangle configuration and dispersion of the screws still needed further supports. The purpose of this study was to explore a novel oblique triangle configuration (OTC) of three screws in fixing femoral neck fractures based on the morphology of the femoral neck isthmus (FNI). The computer-aided design modules were used to explore the ideal spatial configuration with largest triangle by three parallel screws. A univariate evaluation model was established based on the oval-like cross-section of the FNI. When the three screws were positioned by the OTC, Inverted Equilateral Triangle Configuration (IETC), and the Maximum Area Inverted Isosceles Triangle Configuration (MA-IITC) respectively, the proportion of area and circumference in the cross-section of FNI and the changing trend of proportion were compared under various torsion angles, eccentricity, and cross-sectional area of FNI. The area and circumference ratios of the parallel screws using the OTC method were significantly higher than in the IETC and MA-IITC groups. In the univariate evaluation model, the OTC area ratio and circumference ratio remained stable under the different femoral neck torsion angles, FNI cross-sectional area, and eccentricity. The OTC method provided an ideal spatial configuration for the FNA fixation with the largest area using three parallel screws. The position of the posterior screw was also away from the metaphyseal artery, potentially reducing the possibility of vascular injury and screw penetrating.
In silico analysis of local RNA secondary structure in influenza virus A, B and C finds evidence of widespread ordered stability but little evidence of significant covariation
Authors: Peterson Jake M. , O’Leary Collin A. , Moss Walter N.
Published: January 2022

Influenza virus is a persistent threat to human health; indeed, the deadliest modern pandemic was in 1918 when an H1N1 virus killed an estimated 50 million people globally. The intent of this work is to better understand influenza from an RNA-centric perspective to provide local, structural motifs with likely significance to the influenza infectious cycle for therapeutic targeting. To accomplish this, we analyzed over four hundred thousand RNA sequences spanning three major clades: influenza A, B and C. We scanned influenza segments for local secondary structure, identified/modeled motifs of likely functionality, and coupled the results to an analysis of evolutionary conservation. We discovered 185 significant regions of predicted ordered stability, yet evidence of sequence covariation was limited to 7 motifs, where 3—found in influenza C—had higher than expected amounts of sequence covariation.
A network analysis of global cephalopod trade
Authors: Ospina-Alvarez Andres , de Juan Silvia , Pita Pablo , Ainsworth Gillian Barbara , Matos Fábio L. , Pita Cristina , Villasante Sebastián
Published: January 2022

The global trade in cephalopods is a multi-billion dollar business involving the fishing and production of more than ten commercially valuable species. It also contributes, in whole or in part, to the subsistence and economic livelihoods of thousands of coastal communities around the world. The importance of cephalopods as a major cultural, social, economic, and ecological resource has been widely recognised, but research efforts to describe the extent and scope of the global cephalopod trade are limited. So far, there are no specific regulatory and monitoring systems in place to analyse the traceability of the global trade in cephalopods at the international level. To understand who are the main global players in cephalopod seafood markets, this paper provides, for the first time, a global overview of the legal trade in cephalopods. Twenty years of records compiled in the UN COMTRADE database were analysed. The database contained 115,108 records for squid and cuttlefish and 71,659 records for octopus, including commodity flows between traders (territories or countries) weighted by monetary value (USD) and volume (kg). A theoretical network analysis was used to identify the emergent properties of this large trade network by analysing centrality measures that revealed key insights into the role of traders. The results illustrate that three countries (China, Spain, and Japan) led the majority of global market movements between 2000 and 2019. Based on volume and value, as well as the number of transactions, 11 groups of traders were identified. The leading cluster consisted of only eight traders, who dominated the cephalopod market in Asia (China, India, South Korea, Thailand, and Vietnam), Europe (the Netherlands, and Spain), and the USA. This paper identifies the countries and territories that acted as major importers or exporters, the best-connected traders, the hubs or accumulators, the modulators, the main flow routes, and the weak points of the global cephalopod trade network over the last 20 years. This knowledge of the network is crucial to move towards an environmentally sustainable, transparent, and food-secure global cephalopod trade.
Skin wound healing assessment via an optimized wound array model in miniature pigs
Authors: Kuo Ting-Yung , Huang Chao-Cheng , Shieh Shyh-Jou , Wang Yu-Bin , Lin Ming-Jen , Wu Ming-Che , Huang Lynn L. H.
Published: January 2022

An appropriate animal wound model is urgently needed to assess wound dressings, cell therapies, and pharmaceutical agents. Minipig was selected owing to similarities with humans in body size, weight, and physiological status. Different wound sizes (0.07–100 cm2) were created at varying distances but fail to adequately distinguish the efficacy of various interventions. We aimed to resolve potential drawbacks by developing a systematic wound healing system. No significant variations in dorsal wound closure and contraction were observed within the thoracolumbar region between boundaries of both armpits and the paravertebral region above rib tips; therefore, Lanyu pigs appear suitable for constructing a reliable dorsal wound array. Blood flow signals interfered with inter-wound distances ˂ 4 cm; a distance > 4 cm is therefore recommended. Wound sizes ≥ 4 cm × 4 cm allowed optimal differentiation of interventions. Partial- (0.23 cm) and full-thickness (0.6 cm) wounds showed complete re-epithelialization on days 13 and 18 and strongest blood flow signals at days 4 and 11, respectively. Given histological and tensile strength assessments, tissue healing resembling normal skin was observed at least after 6 months. We established some golden standards for minimum wound size and distance between adjacent wounds for effectively differentiating interventions in considering 3R principles.
Evaluation of qPCR reference genes for taimen (Hucho taimen) under heat stress
Authors: Yang Xiaoxing , Tong Guangxiang , Dong Le , Yan Ting , Xu Huan , Tang Guopan , Zhang Yongquan , Ma Kai , Yin Jiasheng , Kuang Youyi
Published: January 2022

As a powerful and attractive method for detecting gene expression, qRT-PCR has been broadly used in aquaculture research. Understanding the biology of taimen (Hucho taimen) has drawn increasing interest because of its ecological and economic value. Stable reference genes are required for the reliable quantification of gene expression, but such genes have not yet been optimized for taimen. In this study, the stability levels of 10 commonly used candidate reference genes were evaluated using geNorm, NormFinder, BestKeeper, and RefFinder. The expression levels of the 10 genes were detected using 240 samples from 48 experimental groups consisting of 40 individuals treated under four heat-stress conditions (18, 20, 22, and 24 °C) for 24 h and 26 °C for 4, 24, 48, and 72 h. Six tissues (blood, heart, brain, gill, skin, and liver) were collected from each individual. Ribosomal protein S29 (RPS29) and ribosomal protein L19 (RPL19) were the most stable genes among all of the samples, whereas 28S ribosomal RNA (28S rRNA), attachment region binding protein (ARBP), and 18S ribosomal RNA (18S rRNA) were the least stable. These results were verified by an expression analysis of taimen heat-stress genes (heat shock protein 60, hsp60, and heat shock protein 70, hsp70). In conclusion, RPS29 and RPL19 are the optimal reference genes for qRT-PCR analyses of taimen, irrespective of the tissue and experimental conditions. These results allow the reliable study of gene expression in taimen.
Classification of rat mammary carcinoma with large scale in vivo microwave measurements
Authors: Onemli Emre , Joof Sulayman , Aydinalp Cemanur , Pastacı Özsobacı Nural , Ateş Alkan Fatma , Kepil Nuray , Rekik Islem , Akduman Ibrahim , Yilmaz Tuba
Published: January 2022

Mammary carcinoma, breast cancer, is the most commonly diagnosed cancer type among women. Therefore, potential new technologies for the diagnosis and treatment of the disease are being investigated. One promising technique is microwave applications designed to exploit the inherent dielectric property discrepancy between the malignant and normal tissues. In theory, the anomalies can be characterized by simply measuring the dielectric properties. However, the current measurement technique is error-prone and a single measurement is not accurate enough to detect anomalies with high confidence. This work proposes to classify the rat mammary carcinoma, based on collected large-scale in vivo S$$_{11}$$

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measurements and corresponding tissue dielectric properties with a circular diffraction antenna. The tissues were classified with high accuracy in a reproducible way by leveraging a learning-based linear classifier. Moreover, the most discriminative S$$_{11}$$

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measurement was identified, and to our surprise, using the discriminative measurement along with a linear classifier an 86.92% accuracy was achieved. These findings suggest that a narrow band microwave circuitry can support the antenna enabling a low-cost automated microwave diagnostic system.
The isotopic signature of the “arthropod rain” in a temperate forest
Authors: Rozanova Oksana L. , Tsurikov Sergey M. , Krivosheina Marina G. , Tanasevitch Andrei V. , Fedorenko Dmitry N. , Leonov Vladislav D. , Timokhov Alexander V. , Tiunov Alexei V. , Semenina Eugenia E.
Published: January 2022

Forest canopy is densely populated by phyto-, sapro-, and microbiphages, as well as predators and parasitoids. Eventually, many of crown inhabitants fall down, forming so-called ‘arthropod rain’. Although arthropod rain can be an important food source for litter-dwelling predators and saprophages, its origin and composition remains unexplored. We measured stable isotope composition of the arthropod rain in a temperate mixed forest throughout the growing season. Invertebrates forming arthropod rain were on average depleted in13C and15N by 1.6‰ and 2.7‰, respectively, compared to the soil-dwelling animals. This difference can be used to detect the contribution of the arthropod rain to detrital food webs. Low average δ13C and δ15N values of the arthropod rain were primarily driven by the presence of wingless microhytophages, represented mainly by Collembola and Psocoptera, and macrophytophages, mainly aphids, caterpillars, and heteropterans. Winged arthropods were enriched in heavy isotopes relative to wingless specimens, being similar in the isotopic composition to soil-dwelling invertebrates. Moreover, there was no consistent difference in δ13C and δ15N values between saprophages and predators among winged insects, suggesting that winged insects in the arthropod rain represented a random assemblage of specimens originating in different biotopes, and are tightly linked to soil food webs.
Modulation of the electrical double layer in metals and conducting polymers
Authors: Morgado Jorge
Published: January 2022

The electrical double layer (EDL) formed at the interface between various materials and an electrolyte has been studied for a long time. In particular, the EDL formed at metal/electrolyte interfaces is central in electrochemistry, with a plethora of applications ranging from corrosion to batteries to sensors. The discovery of highly conductive conjugated polymers has opened a new area of electronics, involving solution-based or solution-interfaced devices, and in particular in bioelectronics, namely for use in deep-brain stimulation electrodes and devices to measure and condition cells activity, as these materials offer new opportunities to interface cells and living tissues. Here, it is shown that the potential associated to the double layer formed at the interface between either metals or conducting polymers and electrolytes is modified by the application of an electric field along the conductive substrate. The EDL acts as a transducer of the electric field applied to the conductive substrate. This observation has profound implications in the modelling and operation of devices relying on interfaces between conductive materials (metals and conjugated polymers) and electrolytes, which encompasses various application fields ranging from medicine to electronics.
A novel deep learning-based 3D cell segmentation framework for future image-based disease detection
Authors: Wang Andong , Zhang Qi , Han Yang , Megason Sean , Hormoz Sahand , Mosaliganti Kishore R. , Lam Jacqueline C. K. , Li Victor O. K.
Published: January 2022

Cell segmentation plays a crucial role in understanding, diagnosing, and treating diseases. Despite the recent success of deep learning-based cell segmentation methods, it remains challenging to accurately segment densely packed cells in 3D cell membrane images. Existing approaches also require fine-tuning multiple manually selected hyperparameters on the new datasets. We develop a deep learning-based 3D cell segmentation pipeline, 3DCellSeg, to address these challenges. Compared to the existing methods, our approach carries the following novelties: (1) a robust two-stage pipeline, requiring only one hyperparameter; (2) a light-weight deep convolutional neural network (3DCellSegNet) to efficiently output voxel-wise masks; (3) a custom loss function (3DCellSeg Loss) to tackle the clumped cell problem; and (4) an efficient touching area-based clustering algorithm (TASCAN) to separate 3D cells from the foreground masks. Cell segmentation experiments conducted on four different cell datasets show that 3DCellSeg outperforms the baseline models on the ATAS (plant), HMS (animal), and LRP (plant) datasets with an overall accuracy of 95.6%, 76.4%, and 74.7%, respectively, while achieving an accuracy comparable to the baselines on the Ovules (plant) dataset with an overall accuracy of 82.2%. Ablation studies show that the individual improvements in accuracy is attributable to 3DCellSegNet, 3DCellSeg Loss, and TASCAN, with the 3DCellSeg demonstrating robustness across different datasets and cell shapes. Our results suggest that 3DCellSeg can serve a powerful biomedical and clinical tool, such as histo-pathological image analysis, for cancer diagnosis and grading.
Scalable mapping of myelin and neuron density in the human brain with micrometer resolution
Authors: Chang Shuaibin , Varadarajan Divya , Yang Jiarui , Chen Ichun Anderson , Kura Sreekanth , Magnain Caroline , Augustinack Jean C. , Fischl Bruce , Greve Douglas N. , Boas David A. , Wang Hui
Published: January 2022

Optical coherence tomography (OCT) is an emerging 3D imaging technique that allows quantification of intrinsic optical properties such as scattering coefficient and back-scattering coefficient, and has proved useful in distinguishing delicate microstructures in the human brain. The origins of scattering in brain tissues are contributed by the myelin content, neuron size and density primarily; however, no quantitative relationships between them have been reported, which hampers the use of OCT in fundamental studies of architectonic areas in the human brain and the pathological evaluations of diseases. Here, we built a generalized linear model based on Mie scattering theory that quantitatively links tissue scattering to myelin content and neuron density in the human brain. We report a strong linear relationship between scattering coefficient and the myelin content that is retained across different regions of the brain. Neuronal cell body turns out to be a secondary contribution to the overall scattering. The optical property of OCT provides a label-free solution for quantifying volumetric myelin content and neuron cells in the human brain.
Epigenomic analysis of KLF1 haploinsufficiency in primary human erythroblasts
Authors: Heshusius Steven , Grech Laura , Gillemans Nynke , Brouwer Rutger W. W. , den Dekker Xander T. , van IJcken Wilfred F. J. , Nota Benjamin , Felice Alex E. , van Dijk Thamar B. , von Lindern Marieke , Borg Joseph , van den Akker Emile , Philipsen Sjaak
Published: January 2022

Haploinsufficiency for the erythroid-specific transcription factor KLF1 is associated with hereditary persistence of fetal hemoglobin (HPFH). Increased HbF ameliorates the symptoms of β-hemoglobinopathies and downregulation of KLF1 activity has been proposed as a potential therapeutic strategy. However, the feasibility of this approach has been challenged by the observation that KLF1 haploinsufficient individuals with the same KLF1 variant, within the same family, display a wide range of HbF levels. This phenotypic variability is not readily explained by co-inheritance of known HbF-modulating variants in the HBB, HBS1L-MYB and/or BCL11A loci. We studied cultured erythroid progenitors obtained from Maltese individuals in which KLF1 p.K288X carriers display HbF levels ranging between 1.3 and 12.3% of total Hb. Using a combination of gene expression analysis, chromatin accessibility assays and promoter activity tests we find that variation in expression of the wildtype KLF1 allele may explain a significant part of the variability in HbF levels observed in KLF1 haploinsufficiency. Our results have general bearing on the variable penetrance of haploinsufficiency phenotypes and on conflicting interpretations of pathogenicity of variants in other transcriptional regulators such as EP300, GATA2 and RUNX1.
Farm typology of smallholders integrated farming systems in Southern Coastal Plains of Kerala, India
Authors: Innazent Anitrosa , Jacob D. , Bindhu J. S. , Joseph Brigit , Anith K. N. , Ravisankar N. , Prusty A. K. , Paramesh Venkatesh , Panwar A. S.
Published: January 2022

Adoption of an integrated farming system (IFS) is essential to achieve food and nutritional security in small and marginal holdings. Assessment of IFS to know the resource availability and socio-economic condition of the farm household, farm typology plays a critical role. In this regard, a sample survey of 200 marginal households practicing mixed crop-livestock agriculture was conducted during 2018–2019 at Southern Coastal Plains, which occupies 19,344 ha in Thiruvananthapuram district, Kerala, India. Farming system typology using multivariate statistical techniques of principal component analysis and cluster analysis characterized the diverse farm households coexisting within distinct homogenous farm types. Farming system typology identified four distinct farm types viz.resource constrained type-1 households with small land owned, high abundance of poultry, very low on-farm income, constituted 46.5%; resource endowed type-2 households oriented around fruit and vegetable, plantation crop, with a moderate abundance of large ruminant and poultry, high on-farm income, constituted 12.5%; resource endowed type-3 household oriented around food grain, extensive use of farm machinery, with a moderate abundance of large ruminant, low on-farm income, constituted 21.5%; and resource endowed type-4 household oriented around fodder, with high abundance of large ruminant, medium on-farm income, constituted 19.5% of sampled households. Constraint analysis using constraint severity index assessed the severity of constraints in food grain, horticulture, livestock, complementary and supplementary enterprises in each farm type, which allowed targeted farming systems interventions to be envisaged to overcome soil health problems, crops and animal production constraints. Farming system typology together with constraint analysis are therefore suggested as a practical framework capable of identifying type-specific farm households for targeted farming systems interventions.
Controllable shifting, steering, and expanding of light beam based on multi-layer liquid-crystal cells
Authors: Mur Urban , Ravnik Miha , Seč David
Published: January 2022

Shaping and steering of light beams is essential in many modern applications, ranging from optical tweezers, camera lenses, vision correction to 3D displays. However, current realisations require increasingly greater tunability and aim for lesser specificity for use in diverse applications. Here, we demonstrate tunable light beam control based on multi-layer liquid-crystal cells and external electric field, capable of extended beam shifting, steering, and expanding, using a combination of theory and full numerical modelling, both for liquid crystal orientations and the transmitted light. Specifically, by exploiting three different function-specific and tunable birefringent nematic layers, we show an effective liquid-crystal beam control device, capable of precise control of outgoing light propagation, with possible application in projectors or automotive headlamps.
Cognitive flexibility in 12-month-old preterm and term infants is associated with neurobehavioural development in 18-month-olds
Authors: Shinya Yuta , Kawai Masahiko , Niwa Fusako , Kanakogi Yasuhiro , Imafuku Masahiro , Myowa Masako
Published: January 2022

There is growing evidence that preterm children are at an increased risk of poor executive functioning, which underlies behavioural and attention problems. Previous studies have suggested that early cognitive flexibility is a possible predictor of later executive function; however, how it develops in infancy and relates to the later neurobehavioural outcomes is still unclear in the preterm population. Here, we conducted a longitudinal study to investigate oculomotor response shifting in 27 preterm and 25 term infants at 12 months and its relationship with general cognitive development and effortful control, which is a temperamental aspect closely associated with executive function, at 18 months. We found that moderate to late preterm and term infants significantly inhibited previously rewarded look responses, while very preterm infants did not show significant inhibition of perseverative looking at 12 months. Moreover, lower inhibition of perseverative looking was significantly associated with lower general cognitive development and attentional shifting at 18 months. These findings suggest that the early atypical patterns of oculomotor response shifting may be a behavioural marker for predicting a higher risk of negative neurobehavioural outcomes, including attention-related problems in preterm children.
Childhood hearing impairment and fertility in Norway
Authors: Skirbekk Vegard , Bonsang Éric , Engdahl Bo
Published: January 2022

There is a lack of studies assessing how hearing impairment relates to reproductive outcomes. We examined whether childhood hearing impairment (HI) affects reproductive patterns based on longitudinal Norwegian population level data for birth cohorts 1940–1980. We used Poisson regression to estimate the association between the number of children ever born and HI. The association with childlessness is estimated by a logit model. As a robustness check, we also estimated family fixed effects Poisson and logit models. Hearing was assessed at ages 7, 10 and 13, and reproduction was observed at adult ages until 2014. Air conduction hearing threshold levels were obtained by pure-tone audiometry at eight frequencies from 0.25 to 8 kHz. Fertility data were collected from Norwegian administrative registers. The combined dataset size was N = 50,022. Our analyses reveal that HI in childhood is associated with lower fertility in adulthood, especially for men. The proportion of childless individuals among those with childhood HI was almost twice as large as that of individuals with normal childhood hearing (20.8% vs. 10.7%). The negative association is robust to the inclusion of family fixed effects in the model that allow to control for the unobserved heterogeneity that are shared between siblings, including factors related to the upbringing and parent characteristics. Less family support in later life could add to the health challenges faced by those with HI. More attention should be given to how fertility relates to HI.
The insertion and dysregulation of transposable elements in osteosarcoma and their association with patient event-free survival
Authors: Wang Chao , Liang Chun
Published: January 2022

The dysregulation of transposable elements (TEs) has been explored in a variety of cancers. However, TE activities in osteosarcoma (OS) have not been extensively studied yet. By integrative analysis of RNA-seq, whole-genome sequencing (WGS), and methylation data, we showed aberrant TE activities associated with dysregulations of TEs in OS tumors. Specifically, expression levels of LINE-1 and Alu of different evolutionary ages, as well as subfamilies of SVA and HERV-K, were significantly up-regulated in OS tumors, accompanied by enhanced DNA repair responses. We verified the characteristics of LINE-1 mediated TE insertions, including target site duplication (TSD) length (centered around 15 bp) and preferential insertions into intergenic and AT-rich regions as well as intronic regions of longer genes. By filtering polymorphic TE insertions reported in 1000 genome project (1KGP), besides 148 tumor-specific somatic TE insertions, we found most OS patient-specific TE insertions (3175 out of 3326) are germline insertions, which are associated with genes involved in neuronal processes or with transcription factors important for cancer development. In addition to 68 TE-affected cancer genes, we found recurrent germline TE insertions in 72 non-cancer genes with high frequencies among patients. We also found that +/− 500 bps flanking regions of transcription start sites (TSS) of LINE-1 (young) and Alu showed lower methylation levels in OS tumor samples than controls. Interestingly, by incorporating patient clinical data and focusing on TE activities in OS tumors, our data analysis suggested that higher TE insertions in OS tumors are associated with a longer event-free survival time.
Oxygen care and treatment of retinopathy of prematurity in ocular and neurological prognosis
Authors: Kang Hyun Goo , Choi Eun Young , Cho Hyuna , Kim Min , Lee Christopher Seungkyu , Lee Soon Min
Published: January 2022

This retrospective cohort study aimed to investigate the effects of neonatal oxygen care and retinopathy of prematurity (ROP) treatment on ROP-related ocular and neurological prognoses. We included premature infants treated for ROP at a tertiary referral center between January 2006 and December 2019. Demographic and clinical data were collected from electronic medical records. Odds ratios (ORs) of oxygen care- and ROP treatment-related factors were calculated for ocular and neurological comorbidities 3 years after ROP treatment, after adjusting for potential confounders. ROP requiring treatment was detected in 171 eyes (88 infants). Laser treatment for ROP (OR = 4.73, 95% confidence interval [CI] 1.64–13.63) and duration of invasive ventilation (OR = 1.02, 95% CI 1.00–1.03) were associated with an increase in ocular comorbidities, along with a history of neonatal seizure (OR = 28.29, 95% CI 5.80–137.95) and chorioamnionitis (OR = 32.13, 95% CI 5.47–188.74). No oxygen care- or ROP treatment-related factors showed significant odds for neurological comorbidities. Shorter duration of invasive oxygen supply during neonatal care (less than 49 days) and anti-vascular endothelial growth factor injection as the primary treatment for ROP are less likely to cause ocular comorbidities. No association was identified between ROP treatment modalities and the risk of neurological comorbidities.
The N-terminal tail of the hydrophobin SC16 is not required for rodlet formation
Authors: Vergunst Kathleen L. , Langelaan David N.
Published: January 2022

Hydrophobins are small proteins that are secreted by fungi, accumulate at interfaces, modify surface hydrophobicity, and self-assemble into large amyloid-like structures. These unusual properties make hydrophobins an attractive target for commercial applications as green emulsifiers and surface modifying agents. Hydrophobins have diverse sequences and tertiary structures, and depending on the hydrophobin, different regions of their structure have been proposed to be required for self-assembly. To provide insight into the assembly process, we determined the first crystal structure of a class I hydrophobin, SC16. Based on the crystal structure, we identified a putative intermolecular contact that may be important for rodlet assembly and was formed in part by the N-terminal tail of SC16. Surprisingly, removal of the N-terminal tail did not influence the self-assembly kinetics of SC16 or the morphology of its rodlets. These results suggest that other regions of this hydrophobin class are required for rodlet formation and indicate that the N-terminal tail of SC16 is amenable to modification so that functionalized hydrophobin assemblies can be created.
New tip-apex distance and calcar-referenced tip-apex distance cut-offs may be the best predictors for cut-out risk after intramedullary fixation of proximal femur fractures
Authors: Caruso Gaetano , Corradi Nicola , Caldaria Antonio , Bottin Daniele , Lo Re Dario , Lorusso Vincenzo , Morotti Chiara , Valpiani Giorgia , Massari Leo
Published: January 2022

Cut-out is one of the most common mechanical failures in the internal fixation of trochanteric hip fractures. The tip-apex distance (TAD), and the calcar-referenced tip apex distance (CalTAD) are the radiographic parameters that most predict the risk of cut-out. The optimal CalTAD value has not yet been defined, but the optimal TAD value is reported as 25 mm or less. However, this cut-off is highly specific but poorly sensitive. The aim of this study was to determine highly specific and sensitive TAD and CalTAD values and shed light on the role of other clinical variables. A total of 604 patients were included in this retrospective cross-sectional study. For each patient the following data were recorded: number of cut-out, AO/OTA classification, quality of the reduction, type of nail, cervicodiaphyseal angle, type of distal locking, post-operative weight-bearing, TAD and CalTAD values, and the position of the screw head in the femoral head according to the Cleveland system. The incidence of cut-out across the sample was 3.1%. The median TAD in the cut-out group was 38.72, while in the no cut-out group it was 22.16. The median CalTAD in the cut-out group was 39.34, while in the no cut-out group it was 22.19. The cut-off values for TAD and CalTAD with highest value of sensitivity and specificity for the risk of cut-out were 34.8 and 35.2, respectively. The incidence of cut-out can be reduced by performing careful minimal reduction and ensuring stable fixation by avoiding TAD > 34.8 mm and CalTAD > 35.2 mm.
Effects of intracellular calcium accumulation on proteins encoded by the major genes underlying amyotrophic lateral sclerosis
Authors: De Marco Giovanni , Lomartire Annarosa , Manera Umberto , Canosa Antonio , Grassano Maurizio , Casale Federico , Fuda Giuseppe , Salamone Paolina , Rinaudo Maria Teresa , Colombatto Sebastiano , Moglia Cristina , Chiò Adriano , Calvo Andrea
Published: January 2022

The aetiology of Amyotrophic Lateral Sclerosis (ALS) is still poorly understood. The discovery of genetic forms of ALS pointed out the mechanisms underlying this pathology, but also showed how complex these mechanisms are. Excitotoxicity is strongly suspected to play a role in ALS pathogenesis. Excitotoxicity is defined as neuron damage due to excessive intake of calcium ions (Ca2+) by the cell. This study aims to find a relationship between the proteins coded by the most relevant genes associated with ALS and intracellular Ca2+ accumulation. In detail, the profile of eight proteins (TDP-43, C9orf72, p62/sequestosome-1, matrin-3, VCP, FUS, SOD1 and profilin-1), was analysed in three different cell types induced to raise their cytoplasmic amount of Ca2+. Intracellular Ca2+ accumulation causes a decrease in the levels of TDP-43, C9orf72, matrin3, VCP, FUS, SOD1 and profilin-1 and an increase in those of p62/sequestosome-1. These events are associated with the proteolytic action of two proteases, calpains and caspases, as well as with the activation of autophagy. Interestingly, Ca2+ appears to both favour and hinder autophagy. Understanding how and why calpain-mediated proteolysis and autophagy, which are physiological processes, become pathological may elucidate the mechanisms responsible for ALS and help discover new therapeutic targets.
Feasibility of a novel photoproduction of 225Ac and 227Th with natural thorium target
Authors: Ju Kwangho , Kim Yonghee
Published: January 2022

We propose an innovative way to produce both 225Ac and 227Th, two precious radioisotopes enabling promising targeted alpha therapy, in a natural thorium target bombarded with a 30–90 MeV electron beam. Bremsstrahlung photons in the target are analyzed by MCNP and in-situ photonuclear transmutation of 232Th is evaluated by using the TENDL nuclear data. In the photo-transmutation analysis, 13 nuclides including 229Th and 231Pa are modelled. Special procedures with chemical separations are also proposed to produce pure 225Ac and 227Th in separate streams. In addition, performance of the new approach is compared with conventional methods in terms of the 225Ac and 227Th yields. After a Th target is bombarded with a 500 kW electron beam for a year, yearly 225Ac yield is ~ 8.47 GBq (semi-permanently) and yearly 227Th yield is ~ 48.9 GBq over 50 years, and their yields are at least doubled in a 2-year irradiation. This work will help increase global supply of the two precious isotopes and would invariably help advance TAT-related researches and developments.
Anti-SARS-CoV-2 antibody levels and kinetics of vaccine response: potential role for unresolved inflammation following recovery from SARS-CoV-2 infection
Authors: Gianfagna F. , Veronesi G. , Baj A. , Dalla Gasperina D. , Siclari S. , Drago Ferrante F. , Maggi F. , Iacoviello L. , Ferrario M. M.
Published: January 2022

The immune response after SARS-CoV-2 vaccine administration appears to be characterized by high inter-individual variation, even in SARS-CoV-2 positive subjects, who could have experienced different post-infection, unresolved conditions. We monitored anti-SARS-CoV-2 IgG levels and kinetics along with circulating biomarkers in a cohort of 175 healthcare workers during early immunization with COVID-19 mRNA-LNP BNT162b2 vaccine, to identify the associated factors. Subjects with a previous SARS-CoV-2 infection were characterized by higher BMI and CRP levels and lower neutrophil count with respect to naïve subjects. Baseline IgG levels resulted associated with CRP independently on BMI and inflammatory diseases. Among 137 subjects undergoing vaccination and monitored after the first and the second dose, three kinetic patterns were identified. The pattern showing a rapid growth was characterized by higher IgG levels at baseline and higher CRP and MCHC levels than negative subjects. Subjects previously exposed to SARS-CoV-2 showed higher levels of CRP, suggesting persistence of unresolved inflammation. These levels are the main determinant of IgG levels at baseline and characterized subjects belonging to the best performing, post-vaccine antibody kinetic pattern.
Prenatal diagnosis of fetal growth restriction with polyhydramnios, etiology and impact on postnatal outcome
Authors: Walter Adeline , Calite Elina , Berg Christoph , Gembruch Ulrich , Müller Andreas , Geipel Annegret
Published: January 2022

To assess the spectrum of different etiologies, the intrauterine course, outcome and possible prognostic markers in prenatally detected fetal growth restriction (FGR) combined with polyhydramnios. Retrospective study of 153 cases with FGR combined with Polyhydramnios diagnosed by prenatal ultrasound over a period of 17 years. Charts were reviewed for ultrasound findings, prenatal and postnatal outcome. All cases were categorized into etiological groups and examined for differences. Five etiological groups were identified: chromosomal anomalies (n = 64, 41.8%), complex malformation syndromes (n = 37, 24.1%), isolated malformations (n = 24, 15.7%), musculoskeletal disorders (n = 14, 9.2%) and prenatal non-anomalous fetuses (n = 14, 9.2%). Subgroups showed significant disparities in initial diagnosis of combination of both pathologies, Ratio AFI/ gestational weeks and Doppler ultrasound examinations. Overall mortality rate was 64.7%. Fetuses prenatally assigned to be non-anomalous, showed further complications in 42.9% (n = 6). Fetuses prenatally diagnosed with FGR combined with polyhydramnios are affected by a high morbidity and mortality. Five etiologic groups can be differentiated, showing significant disparities in prenatal and postnatal outcome. Even without recognizable patterns prenatally, long-term-follow up is necessary, as neurodevelopmental or growth delay may occur.
Effect of kerosene combustion atmosphere on the mild steel oxide layer
Authors: Xie Dongbai , Hong Hao , Duo Shuwang , Li Qiang
Published: January 2022

In arson cases, accelerants were usually used by criminals to achieve the purpose of rapid arson. Therefore, fire investigators aim to determine whether accelerants was used in the fire scene. Metallic material has to react with corrosive gas around it at high temperature and the oxidation products may store the information of reactants. Accelerants present in fire scenes impart some oxidative characteristics on metallic materials. The aim of this work is to figure out the possibility to identify the presence of accelerant in a fire according to the oxidation patterns of metallic material. This paper researched the oxidation behavior of mild steel at high temperature in a simulated flame environment. The surface morphological and cross-sectional microstructural features of the samples were characterized by X-ray diffractions, X-ray photoelectron spectroscopy and scanning electron microscopy with energy-dispersive spectroscopy analysis after oxidation. The carbon in the combustion atmosphere had a carburizing effect on the metal oxide layer. It was mostly C–C, C–O and C=O of organic matter could be used as in fire investigation. Various oxidizing atmosphere composite systems promote the formation of metal oxide layers. And bidirectional oxidation mode in the oxide layer further accelerates the oxidation rate. The (wustite) FeO phase was not found in the oxide layer because of the strong oxidation of the combustion atmosphere. These results offer complementary information in fire characteristics, which combining the characterization of surface scale with traditional chemical analysis of recovering ignitable liquid residues from fire debris are expected to offer crucial information for determining the presence of combustion accelerants at a fire scene.
A rapid phage assay for detection of viable Mycobacterium avium subsp. paratuberculosis in milk
Authors: Hosseiniporgham Sepideh , Rebechesu Lucio , Pintore Pierangela , Lollai Stefano , Dattena Maria , Russo Simone , Ruiu Angelo , Sechi Leonardo A.
Published: January 2022

Paratuberculosis is an incurable gastroenteritis among ruminants that is promoted by Mycobacterium avium subsp. paratuberculosis (MAP), an acid-fast mycobacterium. To accelerate the detection of viable pathogen, a conventional (peptide mediated magnetic separation: PMS) and novel (phage-bead qPCR: PBQ) phage based assay was optimized. A superior limit of detection (LOD) of 10 MAP per 10 mL milk was suggested for PBQ compared to 100 cells/10 mL for PMS-phage assay. Via PBQ, viable MAP was found in 48.78% out 41 unpasteurized sheep and goat milk samples. Sheep milk samples (n = 29) that were tested by PMS-phage assay contained no viable MAP. The absence of viable MAP in milk collected from 21 of the recent sheep animals was also confirmed by PBQ after a 2-week gap. Although, the two phage assays comparably detected no viable MAP in the milk samples, MAP DNA and antibodies against MAP were recognized in milk and sera of some of these animals within two instances of sampling representing that some sheep animals were MAP shedders. In conclusion, PBQ and PMS-phage could be promising methods for the assessment of MAP viability in milk samples. However, PBQ was privileged over the PMS-phage assay due to the lower LOD, rapidity, higher sensitivity, lack of need to M. smegmatis and consequent virucidal treatment that are essential in PMS-phage assay for making lawn and inactivation of exogenous mycobacteriophages respectively.
A new stiffness-sensing test to measure damage evolution in solids
Authors: Song Yichi , Magmanlac Doneill J. , Tagarielli Vito L.
Published: January 2022

We propose and assess a procedure to measure the damage evolution in solids as a function of the applied strain, by conducting stiffness-sensing mechanical tests. These tests consist in superimposing to a monotonically increasing applied strain numerous, low-amplitude unloading/reloading cycles, and extracting the current stiffness of the specimens from the slope of the stress–strain curve in each of the unloading/reloading cycles. The technique is applied to a set of polymeric and metallic solids with a wide range of stiffness, including CFRP laminates loaded through the thickness, epoxy resins, injection-moulded and 3D printed PLA and sintered Ti powders. The tests reveal that, for all the materials tested, damage starts developing at the very early stages of deformation, during what is commonly considered an elastic response. We show that the test method is effective and allows enriching the data extracted from conventional mechanical tests, for potential use in data-driven constitutive models. We also show that the measurements are consistent with the results of acoustic and resistive measurements, and that the method can be used to quantify the viscous response of the materials tested.
Development of high-resolution melting (HRM) assay to differentiate the species of Shigella isolates from stool and food samples
Authors: Pakbin Babak , Basti Afshin Akhondzadeh , Khanjari Ali , Brück Wolfram Manuel , Azimi Leila , Karimi Abdollah
Published: January 2022

Shigella species, a group of intracellular foodborne pathogens, are the main causes of bacillary dysentery and shigellosis in humans worldwide. It is essential to determine the species of Shigella in outbreaks and food safety surveillance systems. The available immunological and molecular methods for identifying Shigella species are relatively complicated, expensive and time-consuming. High resolution melting (HRM) assay is a rapid, cost-effective, and easy to perform PCR-based method that has recently been used for the differentiation of bacterial species. In this study, we designed and developed a PCR-HRM assay targeting rrsA gene to distinguish four species of 49 Shigella isolates from clinical and food samples and evaluated the sensitivity and specificity of the assay. The assay demonstrated a good analytical sensitivity with 0.01–0.1 ng of input DNA template and an analytical specificity of 100% to differentiate the Shigella species. The PCR-HRM assay also was able to identify the species of all 49 Shigella isolates from clinical and food samples correctly. Consequently, this rapid and user-friendly method demonstrated good sensitivity and specificity to differentiate species of the Shigella isolates from naturally contaminated samples and has the potential to be implemented in public health and food safety surveillance systems.
Metabolic and lifestyle factors in relation to senile cataract: a Mendelian randomization study
Authors: Yuan Shuai , Wolk Alicja , Larsson Susanna C.
Published: January 2022

We conducted a Mendelian randomization study to determine the associations of body mass index (BMI), type 2 diabetes (T2D), systolic blood pressure (SBP), coffee and alcohol consumption and smoking initiation with senile cataract. Independent single nucleotide polymorphisms associated with the metabolic and lifestyle factors at the p < 5 × 10–8 were selected as instrument variables. Summary-level data for senile cataract were obtained from the FinnGen consortium (20,157 cases and 154,905 non-cases) and UK Biobank study (6332 cases and 354,862 non-cases). Higher genetically predicted BMI and SBP and genetic predisposition to T2D and smoking initiation were associated with an increased risk of senile cataract. The combined odds ratios were 1.19 (95% confidence interval (CI) 1.09–1.29; p < 0.001) per one standard deviation increase in BMI (~ 4.8 kg/m2), 1.13 (95% CI 1.04–1.23; p = 0.004) per 10 mmHg increase in SBP, 1.06 (95% CI 1.03–1.09; p < 0.001) per one unit increase in log-transformed odds ratio of T2D, and 1.19 (95% CI 1.10–1.29; p < 0.001) per one standard deviation increase in prevalence of smoking initiation. Genetically predicted coffee consumption showed a suggestive association with senile cataract (odds ratio per 50% increase, 1.18, 95% CI 1.00–1.40; p = 0.050). This study suggests causal roles of obesity, T2D, SBP and smoking in senile cataract.
Miniaturization during a Silurian environmental crisis generated the modern brittle star body plan
Authors: Thuy Ben , Eriksson Mats E. , Kutscher Manfred , Lindgren Johan , Numberger-Thuy Lea D. , Wright David F.
Published: January 2022

Pivotal anatomical innovations often seem to appear by chance when viewed through the lens of the fossil record. As a consequence, specific driving forces behind the origination of major organismal clades generally remain speculative. Here, we present a rare exception to this axiom by constraining the appearance of a diverse animal group (the living Ophiuroidea) to a single speciation event rather than hypothetical ancestors. Fossils belonging to a new pair of temporally consecutive species of brittle stars (Ophiopetagno paiceigen. et sp. nov. andMuldaster haakeigen. et sp. nov.) from the Silurian (444–419 Mya) of Sweden reveal a process of miniaturization that temporally coincides with a global extinction and environmental perturbation known as the Mulde Event. The reduction in size fromO. paiceitoM. haakeiforced a structural simplification of the ophiuroid skeleton through ontogenetic retention of juvenile traits, thereby generating the modern brittle star bauplan.
Interactions between atomically dispersed copper and phosphorous species are key for the hydrochlorination of acetylene
Authors: Wang Ting , Jiang Zhao , Tang Qi , Wang Bolin , Wang Saisai , Yu Mingde , Chang Renqin , Yue Yuxue , Zhao Jia , Li Xiaonian
Published: January 2022

Vinyl chloride, the monomer of polyvinyl chloride (PVC), is industrially synthesized via acetylene hydrochlorination. Thereby, easy to sublimate but toxic mercury chloride catalysts are widely used. It is imperative to find environmentally friendly non-mercury catalysts to promote the green production of PVC. Low-cost copper-based catalysts are promising candidates. In this study, phosphorus-doped Cu-based catalysts are prepared. It is shown that the type of phosphorus configuration and the distribution on the surface of the carrier can be adjusted by changing the calcination temperature. Among the different phosphorus species, the formed P-C bond plays a key role. The coordination structure formed by the interaction between P-C bonds and atomically dispersed Cu2+species results in effective and stable active sites. Insights on how P-C bonds activate the substrate may provide ideas for the design and optimization of phosphorus-doped catalysts for acetylene hydrochlorination.