bluuebunny/crossref_metadata_2025 huggingface dataset:
The amniotic fluid proteome changes with gestational age in normal pregnancy: a cross-sectional study
Authors: Bhatti Gaurav , Romero Roberto , Gomez-Lopez Nardhy , Chaiworapongsa Tinnakorn , Jung Eunjung , Gotsch Francesca , Pique-Regi Roger , Pacora Percy , Hsu Chaur-Dong , Kavdia Mahendra , Tarca Adi L.
Published: January 2022

The cell-free transcriptome in amniotic fluid (AF) has been shown to be informative of physiologic and pathologic processes in pregnancy; however, the change in AF proteome with gestational age has mostly been studied by targeted approaches. The objective of this study was to describe the gestational age-dependent changes in the AF proteome during normal pregnancy by using an omics platform. The abundance of 1310 proteins was measured on a high-throughput aptamer-based proteomics platform in AF samples collected from women during midtrimester (16–24 weeks of gestation, n = 15) and at term without labor (37–42 weeks of gestation, n = 13). Only pregnancies without obstetrical complications were included in the study. Almost 25% (320) of AF proteins significantly changed in abundance between the midtrimester and term gestation. Of these, 154 (48.1%) proteins increased, and 166 (51.9%) decreased in abundance at term compared to midtrimester. Tissue-specific signatures of the trachea, salivary glands, brain regions, and immune system were increased while those of the gestational tissues (uterus, placenta, and ovary), cardiac myocytes, and fetal liver were decreased at term compared to midtrimester. The changes in AF protein abundance were correlated with those previously reported in the cell-free AF transcriptome. Intersecting gestational age-modulated AF proteins and their corresponding mRNAs previously reported in the maternal blood identified neutrophil-related protein/mRNA pairs that were modulated in the same direction. The first study to utilize an aptamer-based assay to profile the AF proteome modulation with gestational age, it reveals that almost one-quarter of the proteins are modulated as gestation advances, which is more than twice the fraction of altered plasma proteins (~ 10%). The results reported herein have implications for future studies focused on discovering biomarkers to predict, monitor, and diagnose obstetrical diseases.
Factors associated with back pain in children aged 6 to 12 years of age, an eight months prospective study
Authors: Henriot-Jéhel Claire , Lemire Jocelyn , Teulier Caroline , Bussières André , Lardon Arnaud
Published: January 2022

Associated factors of back pain (BP) development before puberty and its persistence are poorly documented. We investigated the association and possible temporality between prior BP history (PBPH), muscular endurance (ME), aerobic capacity (AC), sport activity variables (SAV) and BP in children aged 6 to 12. We collected baseline characteristics (demographics, PBPH, ME, AC and SAV) of children from three primary schools in Canada. Parents replied to weekly text messages regarding their children BP status over an 8-month period. Logistic regression models were adjusted for potential confounders. Data from 242 children (46% female; 8.6 ± 1.7 years) were included. Over the 8-month survey BP prevalence was 48.1%, while the cumulative incidence was 31.9%. The occurrence of at least one BP event was associated with PBPH [OR (IC 95%) = 6.33 (2.35–17.04)] and high AC [2.89 (1.21–6.90)]. High AC was also associated with the development of a first BP episode [2.78 (1.09–7.07)], but ME and SAV were not. BP appears to be relatively common before puberty. BP history seems to be strongly associated with BP recurrence in children. Aerobic capacity is associated with first BP episode development.
Nanoscale cutting using self-excited microcantilever
Authors: Yang Rui , Ogura Ichiro , Jiang ZhenYan , An LinJun , Ashida Kiwamu , Yabuno Hiroshi
Published: January 2022

The application of self-excitation is proposed to improve the efficiency of the nanoscale cutting procedure based on use of a microcantilever in atomic force microscopy. The microcantilever shape is redesigned so that it can be used to produce vibration amplitudes with sufficient magnitudes to enable the excitation force applied by an actuator to be transferred efficiently to the tip of the microcantilever for the cutting process. A diamond abrasive that is set on the tip is also fabricated using a focused ion beam technique to improve the cutting effect. The natural frequency of the microcantilever is modulated based on the pressing load. Under conventional external excitation conditions, to maintain the microcantilever in its resonant state, it is necessary to vary the excitation frequency in accordance with the modulation. In this study, rather than using external excitation, the self-excitation cutting method is proposed to overcome this difficulty. The self-excited oscillation is produced by appropriate setting of the phase difference between the deflection signal of the microcantilever and the feedback signal for the actuator. In addition, it is demonstrated experimentally that the change in the phase difference enables us to control the amplitude of the self-excitation. As a result, control of the cutting depth is achieved via changes in the phase difference.
Contributions of common genetic variants to specific languages and to when a language is learned
Authors: Wong Patrick C. M. , Kang Xin , So Hon-Cheong , Choy Kwong Wai
Published: January 2022

Research over the past two decades has identified a group of common genetic variants explaining a portion of variance in native language ability. The present study investigates whether the same group of genetic variants are associated with different languages and languages learned at different times in life. We recruited 940 young adults who spoke from childhood Chinese and English as their first (native) (L1) and second (L2) language, respectively, who were learners of a new, third (L3) language. For the variants examined, we found a general decrease of contribution of genes to language functions from native to foreign (L2 and L3) languages, with variance in foreign languages explained largely by non-genetic factors such as musical training and motivation. Furthermore, genetic variants that were found to contribute to traits specific to Chinese and English respectively exerted the strongest effects on L1 and L2. These results seem to speak against the hypothesis of a language- and time-universal genetic core of linguistic functions. Instead, they provide preliminary evidence that genetic contribution to language may depend at least partly on the intricate language-specific features. Future research including a larger sample size, more languages and more genetic variants is required to further explore these hypotheses.
Non-Hermitian topology in rock–paper–scissors games
Authors: Yoshida Tsuneya , Mizoguchi Tomonari , Hatsugai Yasuhiro
Published: January 2022

Non-Hermitian topology is a recent hot topic in condensed matters. In this paper, we propose a novel platform drawing interdisciplinary attention: rock–paper–scissors (RPS) cycles described by the evolutionary game theory. Specifically, we demonstrate the emergence of an exceptional point and a skin effect by analyzing topological properties of their payoff matrix. Furthermore, we discover striking dynamical properties in an RPS chain: the directive propagation of the population density in the bulk and the enhancement of the population density only around the right edge. Our results open new avenues of the non-Hermitian topology and the evolutionary game theory.
A method for simultaneous detection of small and long RNA biotypes by ribodepleted RNA-Seq
Authors: Potemkin Nikita , Cawood Sophie M. F. , Treece Jackson , Guévremont Diane , Rand Christy J. , McLean Catriona , Stanton Jo-Ann L. , Williams Joanna M.
Published: January 2022

RNA sequencing offers unprecedented access to the transcriptome. Key to this is the identification and quantification of many different species of RNA from the same sample at the same time. In this study we describe a novel protocol for simultaneous detection of coding and non-coding transcripts using modifications to the Ion Total RNA-Seq kit v2 protocol, with integration of QIASeq FastSelect rRNA removal kit. We report highly consistent sequencing libraries can be produced from both frozen high integrity mouse hippocampal tissue and the more challenging post-mortem human tissue. Removal of rRNA using FastSelect was extremely efficient, resulting in less than 1.5% rRNA content in the final library. We identified > 30,000 unique transcripts from all samples, including protein-coding genes and many species of non-coding RNA, in biologically-relevant proportions. Furthermore, the normalized sequencing read count for select genes significantly negatively correlated with Ct values from qRT-PCR analysis from the same samples. These results indicate that this protocol accurately and consistently identifies and quantifies a wide variety of transcripts simultaneously. The highly efficient rRNA depletion, coupled with minimized sample handling and without complicated and high-loss size selection protocols, makes this protocol useful to researchers wishing to investigate whole transcriptomes.
Increased prevalence of clonal hematopoiesis of indeterminate potential amongst people living with HIV
Authors: Bick Alexander G. , Popadin Konstantin , Thorball Christian W. , Uddin Md Mesbah , Zanni Markella V. , Yu Bing , Cavassini Matthias , Rauch Andri , Tarr Philip , Schmid Patrick , Bernasconi Enos , Günthard Huldrych F. , Libby Peter , Boerwinkle Eric , McLaren Paul J. , Ballantyne Christie M. , Grinspoon Steven , Natarajan Pradeep , Fellay Jacques ,   the Swiss HIV Cohort Study, Abela I. , Aebi-Popp K. , Anagnostopoulos A. , Battegay M. , Bernasconi E. , Braun D. L. , Bucher H. C. , Calmy A. , Cavassini M. , Ciuffi A. , Dollenmaier G. , Egger M. , Elzi L. , Fehr J. , Fellay J. , Furrer H. , Fux C. A. , Günthard H. F. , Hachfeld A. , Haerry D. , Hasse B. , Hirsch H. H. , Hoffmann M. , Hösli I. , Huber M. , Kahlert C. R. , Kaiser L. , Keiser O. , Klimkait T. , Kouyos R. D. , Kovari H. , Kusejko K. , Martinetti G. , de Tejada B. Martinez , Marzolini C. , Metzner K. J. , Müller N. , Nemeth J. , Nicca D. , Paioni P. , Pantaleo G. , Perreau M. , Rauch A. , Schmid P. , Speck R. , Stöckle M. , Tarr P. , Trkola A. , Wandeler G. , Yerly S.
Published: January 2022

People living with human immunodeficiency virus (PLWH) have significantly increased risk for cardiovascular disease in part due to inflammation and immune dysregulation. Clonal hematopoiesis of indeterminate potential (CHIP), the age-related acquisition and expansion of hematopoietic stem cells due to leukemogenic driver mutations, increases risk for both hematologic malignancy and coronary artery disease (CAD). Since increased inflammation is hypothesized to be both a cause and consequence of CHIP, we hypothesized that PLWH have a greater prevalence of CHIP. We searched for CHIP in multi-ethnic cases from the Swiss HIV Cohort Study (SHCS, n = 600) and controls from the Atherosclerosis Risk in the Communities study (ARIC, n = 8111) from blood DNA-derived exome sequences. We observed that HIV is associated with a twofold increase in CHIP prevalence, both in the whole study population and in a subset of 230 cases and 1002 matched controls selected by propensity matching to control for demographic imbalances (SHCS 7%, ARIC 3%, p = 0.005). We also observed that ASXL1 is the most commonly mutated CHIP-associated gene in PLWH. Our results suggest that CHIP may contribute to the excess cardiovascular risk observed in PLWH.
Longitudinal and transversal resonant tunneling of interacting bosons in a two-dimensional Josephson junction
Authors: Bhowmik Anal , Alon Ofir E.
Published: January 2022

We unravel the out-of-equilibrium quantum dynamics of a few interacting bosonic clouds in a two-dimensional asymmetric double-well potential at the resonant tunneling scenario. At the single-particle level of resonant tunneling, particles tunnel under the barrier from, typically, the ground-state in the left well to an excited state in the right well, i.e., states of different shapes and properties are coupled when their one-particle energies coincide. In two spatial dimensions, two types of resonant tunneling processes are possible, to which we refer to as longitudinal and transversal resonant tunneling. Longitudinal resonant tunneling implies that the state in the right well is longitudinally-excited with respect to the state in the left well, whereas transversal resonant tunneling implies that the former is transversely-excited with respect to the latter. We show that interaction between bosons makes resonant tunneling phenomena in two spatial dimensions profoundly rich, and analyze these phenomena in terms of the loss of coherence of the junction and development of fragmentation, and coupling between transverse and longitudinal degrees-of-freedom and excitations. To this end, a detailed analysis of the tunneling dynamics is performed by exploring the time evolution of a few physical quantities, namely, the survival probability, occupation numbers of the reduced one-particle density matrix, and the many-particle position, momentum, and angular-momentum variances. To accurately calculate these physical quantities from the time-dependent many-boson wavefunction, we apply a well-established many-body method, the multiconfigurational time-dependent Hartree for bosons (MCTDHB), which incorporates quantum correlations exhaustively. By comparing the survival probabilities and variances at the mean-field and many-body levels of theory and investigating the development of fragmentation, we identify the detailed mechanisms of many-body longitudinal and transversal resonant tunneling in two dimensional asymmetric double-wells. In particular, we find that the position and momentum variances along the transversal direction are almost negligible at the longitudinal resonant tunneling, whereas they are substantial at the transversal resonant tunneling which is caused by the combination of the density and breathing mode oscillations. We show that the width of the interparticle interaction potential does not affect the qualitative physics of resonant tunneling dynamics, both at the mean-field and many-body levels. In general, we characterize the impact of the transversal and longitudinal degrees-of-freedom in the many-boson tunneling dynamics at the resonant tunneling scenarios.
Study of epidemiological behaviour of malaria and its control in the Purulia district of West Bengal, India (2016–2020)
Authors: Pradhan Sayantan , Hore Samrat , Maji Suman Kumar , Manna Simi , Maity Abhijit , Kundu Pratip Kumar , Maity Krishna , Roy Stabak , Mitra Saptarshi , Dam Paulami , Mondal Rittick , Ghorai Suvankar , Jawed Junaid Jibran , Dutta Subhadeep , Das Sandip , Mandal Sukhendu , Mandal Sanjib , Kati Ahmet , Sinha Sangram , Maity Amit Bikram , Dolai Tuphan Kanti , Mandal Amit Kumar , İnce İkbal Agah
Published: January 2022

Purulia is a malaria-prone district in West Bengal, India, with approximately half of the blocks defined as malaria endemic. We analyzed the malaria case in each block of the Purulia district from January 1, 2016, to December 31, 2020. As per the API, 20 blocks of Purulia were assigned to four different categories (0–3) and mapped using ArcGIS software. An exponential decay model was fitted to forecast the trend of malaria cases for each block of Purulia (2021–2025). There was a sharp decrease in total malaria cases and API from 2016 to 2020 due to the mass distribution of LLINs. The majority of cases (72.63%) were found in ≥ 15-year age group. Males were more prone to malaria (60.09%). Malaria was highly prevalent among Scheduled Tribes (48.44%). Six blocks were reported in Category 3 (high risk) and none in Category 0 (no risk) in 2016, while no blocks were determined to be in Category 3, and three blocks were in Category 0 in 2020. The exponential decay model prediction is oriented towards gaining malaria-free status in thirteen blocks of Purulia by 2025. This study will incite the government to uphold and strengthen the current efforts to meet the malaria elimination goals.
Validation of CSR model to predict stroke risk after transient ischemic attack
Authors: Zhao Lu , Cao Shuang , Pei Lulu , Fang Hui , Liu Hao , Wu Jun , Sun Shilei , Gao Yuan , Song Bo , Xu Yuming
Published: January 2022

It is essential to identify high risk transient ischemic attack (TIA) patients. The previous study reported that the CSR (comprehensive stroke recurrence) model, a neuroimaging model, had a high predictive ability of recurrent stroke. The aims of this study were to validate the predictive value of CSR model in TIA patients and compare the predictive ability with ABCD3-I score. Data were analyzed from the prospective hospital-based database of patients with TIA which defined by the World Health Organization time-based criteria. The predictive outcome was stroke occurrence at 90 days. The receiver-operating characteristic (ROC) curves were plotted and the C statistics were calculated as a measure of predictive ability. Among 1186 eligible patients, the mean age was 57.28 ± 12.17 years, and 474 (40.0%) patients had positive diffusion-weighted imaging (DWI). There were 118 (9.9%) patients who had stroke within 90 days. In 1186 TIA patients, The C statistic of CSR model (0.754; 95% confidence interval [CI] 0.729–0.778) was similar with that of ABCD3-I score (0.717; 95% CI 0.691–0.743; Z = 1.400; P = 0.1616). In 474 TIA patients with positive DWI, C statistic of CSR model (0.725; 95% CI 0.683–0.765) was statistically higher than that of ABCD3-I score (0.626; 95% CI 0.581–0.670; Z = 2.294; P = 0.0245). The CSR model had good predictive value for assessing stroke risk after TIA, and it had a higher predictive value than ABCD3-I score for assessing stroke risk for TIA patients with positive DWI.
Deep learning-based system development for black pine bast scale detection
Authors: Yun Wonsub , Kumar J. Praveen , Lee Sangjoon , Kim Dong-Soo , Cho Byoung-Kwan
Published: January 2022

The prevention of the loss of agricultural resources caused by pests is an important issue. Advances are being made in technologies, but current farm management methods and equipment have not yet met the level required for precise pest control, and most rely on manual management by professional workers. Hence, a pest detection system based on deep learning was developed for the automatic pest density measurement. In the proposed system, an image capture device for pheromone traps was developed to solve nonuniform shooting distance and the reflection of the outer vinyl of the trap while capturing the images. Since the black pine bast scale pest is small, pheromone traps are captured as several subimages and they are used for training the deep learning model. Finally, they are integrated by an image stitching algorithm to form an entire trap image. These processes are managed with the developed smartphone application. The deep learning model detects the pests in the image. The experimental results indicate that the model achieves an F1 score of 0.90 and mAP of 94.7% and suggest that a deep learning model based on object detection can be used for quick and automatic detection of pests attracted to pheromone traps.
Co-expression of cancer-testis antigens of MAGE-A6 and MAGE-A11 is associated with tumor aggressiveness in patients with bladder cancer
Authors: Mohsenzadegan Monireh , Razmi Mahdieh , Vafaei Somayeh , Abolhasani Maryam , Madjd Zahra , Saeednejad Zanjani Leili , Sharifi Laleh
Published: January 2022

Melanoma antigen gene (MAGE)-A6 and MAGE-A11 are two of the most cancer-testis antigens overexpressed in various types of cancers. However, the clinical and prognosis value of MAGE-A6 and MAGE-A11 co-expression in the pathophysiology of the bladder is unknown. Three studies were selected from GEO databases in order to introduce the common genes that are involved in bladder cancer. Then immunohistochemical analysis for staining pattern and clinicopathological significance of suggested markers, MAGE-A6 and MAGE-A11, were performed in 199 and 213 paraffin-embedded bladder cancer with long adjacent normal tissues, respectively. A significant and positive correlation was found between both nuclear and cytoplasmic expressions of MAGE-A6 as well as expression of cytoplasmic MAGE-A11 with histological grade, PT stage, lamina propria invasion, and LP/ muscularis (L/M) involvement (all of the p-values in terms of H-score were < 0.0001). Additionally, significant differences were found between both nuclear and cytoplasmic MAGE-A6/MAGE-A11 phenotypes with tumor size (P = 0.007, P = 0.043, respectively), different histological grades, PT stage, LP involvement, and L/M involvement (all of the p-values for both phenotypes were < 0.0001). The current study added the value of these novel markers to the bladder cancer clinical settlement that might be considered as an admirable target for immunotherapy.
Electrocardiographic diagnosis of atrial cardiomyopathy to predict atrial contractile dysfunction, thrombogenesis and adverse cardiovascular outcomes
Authors: Müller-Edenborn Björn , Minners Jan , Keyl Cornelius , Eichenlaub Martin , Jander Nikolaus , Abdelrazek Sherif , Ahlgrim Christoph , Allgeier Jürgen , Lehrmann Heiko , Neumann Franz-Josef , Arentz Thomas , Jadidi Amir
Published: January 2022

Thromboembolism and stroke are dreaded complications in atrial fibrillation (AF). Established risk stratification models identify susceptible patients, but their discriminative properties are poor. Atrial cardiomyopathy (ACM) is associated to thromboembolism and stroke in smaller studies, but the modalities used for ACM-diagnosis (MRI and endocardial mapping) are unsuitable for widespread population screening. We aimed to investigate an ECG-based diagnosis of ACM using amplified p-wave analysis (APWA) for stratification of thromboembolic risk and cardiovascular outcome. In this case–control study, ACM-staging was performed using APWA on digital 12-lead sinus rhythm-ECGs in patients with LAA-thrombus and a propensity-score-matched control-cohort. Left atrial contractile function and thrombi were evaluated by transesophageal echocardiography (TEE). Outcome for MACCE including death was assessed using official registries and structured phone interviews. Left-atrial appendage [LAA]-thrombi and appropriate sinus rhythm-ECGs for ACM-staging were found in 109 of 4086 patients that were matched 1:1 to control patients without thrombus (218 patients in total). Both cohorts were comparable regarding cardiovascular risk factors, anticoagulants and CHA2DS2-VASC-score. ACM-stages 1 to 3 (equivalent to no, moderate and extensive ACM) were found in 63 (57.8%), 36 (33.0%) and 10 (9.2%) of patients without and 3 (2.8%), 23 (21.1%) and 83 (76.1%) of patients with LAA-thrombi. Atrial contractile function decreased from ACM-stages 1 to 3 (LAA-flow velocities 38 ± 16 cm/s, 31 ± 15 cm/s and 21 ± 12 cm/s; p < 0.0001), while the likelihood for LAA-thrombus increased (2.8%, 21.1% and 76.1%, p < 0.001). Multivariable analysis confirmed an independent odds ratio for LAA-thrombus of 24.6 (p < 0.001) per ACM-stage. Two-year survival free of stroke/TIA, hospitalization for heart failure, myocardial infarction or all-cause death was strongly reduced in ACM-stage 3 (53.8%) compared to no or moderate ACM (82.8% and 84.7%, respectively; p < 0.0001). Electrocardiographic diagnosis of ACM identifies patients with atrial contractile dysfunction and atrial thrombi at risk for adverse cardiovascular outcomes and death.
Diagnostic value of 18F-FDG PET/CT versus contrast-enhanced MRI for venous tumour thrombus and venous bland thrombus in renal cell carcinoma
Authors: Zhu An-hui , Hou Xiao-yan , Tian Shuai , Zhang Wei-fang
Published: January 2022

The purpose of this study was to compare the ability of 18F-FDG PET/CT and contrast-enhanced MRI (CEMRI) to detect and grade venous tumour thrombus (VTT) and venous bland thrombus (VBT) in RCC and assess invasion of the venous wall by VTT. The PET/CT and CEMRI data of 41 patients with RCC were retrieved. The difference in maximum standardized uptake value (SUVmax) between VTT and VBT was analysed. According to their pathological diagnosis, the patients were divided into those with and without venous wall invasion. The PET/CT and CEMRI features, including the SUVmax of the primary lesion and VTT, maximum venous diameter, complete occlusion of the vein by VTT, and VTT morphology, were compared between the two groups. All 41 patients had VTT, and eleven of the 41 patients had VBT. The mean SUVmax of the VTT (6.33 ± 4. 68, n = 41) was significantly higher than that of the VBT (1.37 ± 0.26, n = 11; P < 0.001). Ten of the 11 cases of VBT were correctly diagnosed by 18F-FDG PET/CT, and all 11 were diagnosed by CEMRI. Both 18F-FDG PET/CT and CEMRI can effectively detect VTT and distinguish VTT from VBT. 18F-FDG PET/CT is less effective in grading VTT than CEMRI. Complete venous occlusion by VTT indicates venous wall invasion.
A Comparison of effect of preemptive versus postoperative use of ultrasound-guided bilateral transversus abdominis plane (TAP) block on pain relief after laparoscopic cholecystectomy
Authors: Rahimzadeh Poupak , Faiz Seyed Hamid Reza , Latifi-Naibin Kaveh , Alimian Mahzad
Published: January 2022

Nowadays, there are various methods to manage pain after laparoscopic cholecystectomy. The aim of this study was to compare the effectof preemptive versus postoperative use of ultrasound-guided transversus abdominis plane (USG-TAP) block on pain relief after laparoscopic cholecystectomy. In this single-blinded randomized clinical trial, the patients who were candidates for laparoscopic cholecystectomy were randomly divided into the two groups (n = 38 per group). In the preemptive group (PG) after the induction of anesthesia and in the postoperative group (POG) after the end of surgery and before the extubation, bilateral ultrasound-guided transversus abdominis plane (TAP) block was performed on patients using 20 cc of ropivacaine 0.25%. Both groups received patient controlled IV analgesia (PCIA) containing Acetaminophen (20 mg/ml) plus ketorolac (0.6 mg/ml) as a standard postoperative analgesia and meperidine 20 mg q 4 h PRN for rescue analgesia. Using the numerical rating scales (NSR), the patients’ pain intensity was assessed at time of arrival to the PACU and in 2th, 4th, 8th, 12th, 24th h. Primary outcome of interest is NSR at rest and coughing in the PACU and in 2th, 4th, 8th, 12th, 24th h. Secondary outcomes of interests were the time to first post-surgical rescue analgesic and level of patients’ pain control satisfaction in the first 24 h. The USG-TAP block significantly decreased pain score in the POG compared to the PG, and also the pain was relieved at rest especially in 8 and 12 h (pvalue ≤ 0.05) after the surgery. Pain score after coughing during recovery at 2, 8 and 12 h after the operation were significantly decreased. (pvalue ≤ 0.05) The patient satisfaction scores in the POG were significantly higher in all times. There was a statistically significant difference between the two groups in terms of rate of postoperative nausea and vomiting (PONV), indicating that patients in the POG had significantly lower incidences of the PONV compared tothe PG. The time to first analgesic request was significantly shorterin the POG, which was statistically significant (pvalue = 0.089). There was no statistically significant difference between the two groups in terms of consumption of analgesics. The postoperative TAP block could offer better postoperative analgesia than preepmtive TAP block.
Neurons in the pigeon visual network discriminate between faces, scrambled faces, and sine grating images
Authors: Clark William , Chilcott Matthew , Azizi Amir , Pusch Roland , Perry Kate , Colombo Michael
Published: January 2022

Discriminating between object categories (e.g., conspecifics, food, potential predators) is a critical function of the primate and bird visual systems. We examined whether a similar hierarchical organization in the ventral stream that operates for processing faces in monkeys also exists in the avian visual system. We performed electrophysiological recordings from the pigeon Wulst of the thalamofugal pathway, in addition to the entopallium (ENTO) and mesopallium ventrolaterale (MVL) of the tectofugal pathway, while pigeons viewed images of faces, scrambled controls, and sine gratings. A greater proportion of MVL neurons fired to the stimuli, and linear discriminant analysis revealed that the population response of MVL neurons distinguished between the stimuli with greater capacity than ENTO and Wulst neurons. While MVL neurons displayed the greatest response selectivity, in contrast to the primate system no neurons were strongly face-selective and some responded best to the scrambled images. These findings suggest that MVL is primarily involved in processing the local features of images, much like the early visual cortex.
Performance of a flow cytometry-based immunoassay for detection of antibodies binding to SARS-CoV-2 spike protein
Authors: Valdivia Arantxa , Tarín Fabián , Alcaraz María Jesús , Piñero Paula , Torres Ignacio , Marco Francisco , Albert Eliseo , Navarro David
Published: January 2022

The performance of a laboratory-developed IgG/IgA flow cytometry-based immunoassay (FCI) using Jurkat T cells stably expressing full-length native S protein was compared against Elecsys electrochemiluminiscent (ECLIA) Anti-SARS-CoV-2 S (Roche Diagnostics, Pleasanton, CA, USA), and Liaison SARS-CoV-2 TrimericS IgG chemiluminiscent assay (CLIA) (Diasorin S.p.a, Saluggia, IT) for detection of SARS-CoV-2-specific antibodies. A total of 225 serum/plasma specimens from 120 acute or convalescent COVID-19 individuals were included. Overall, IgG/IgA-FCI yielded the highest number of positives (n = 179), followed by IgA-FCI (n = 177), Roche ECLIA (n = 175), IgG-FCI (n = 172) and Diasorin CLIA (n = 154). For sera collected early after the onset of symptoms (within 15 days) IgG/IgA-FCI also returned the highest number of positive results (52/72; 72.2%). Positive percent agreement between FCI and compared immunoassays was highest for Roche ECLIA, ranging from 96.1 (IgG/IgA-FCI) to 97.7% (IgG-FCI), whereas negative percent agreement was higher between FCI and Diasosin CLIA, regardless of antibody isotype. The data suggest that FCI may outperform Roche ECLIA and Diasorin CLIA in terms of clinical sensitivity for serological diagnosis of SARS-CoV-2 infection.
Strain specific motility patterns and surface adhesion of virulent and probiotic Escherichia coli
Authors: Abdulkadieva M. M. , Sysolyatina E. V. , Vasilieva E. V. , Gusarov A. I. , Domnin P. A. , Slonova D. A. , Stanishevskiy Y. M. , Vasiliev M. M. , Petrov O. F. , Ermolaeva S. A.
Published: January 2022

Bacterial motility provides the ability for bacterial dissemination and surface exploration, apart from a choice between surface colonisation and further motion. In this study, we characterised the movement trajectories of pathogenic and probiotic Escherichia coli strains (ATCC43890 and M17, respectively) at the landing stage (i.e., leaving the bulk and approaching the surface) and its correlation with adhesion patterns and efficiency. A poorly motile strain JM109 was used as a control. Using specially designed and manufactured microfluidic chambers, we found that the motion behaviour near surfaces drastically varied between the strains, correlating with adhesion patterns. We consider two bacterial strategies for effective surface colonisation: horizontal and vertical, based on the obtained results. The horizontal strategy demonstrated by the M17 strain is characterised by collective directed movements within the horizontal layer during a relatively long period and non-uniform adhesion patterns, suggesting co-dependence of bacteria in the course of adhesion. The vertical strategy demonstrated by the pathogenic ATCC43890 strain implies the individual movement of bacteria mainly in the vertical direction, a faster transition from bulk to near-surface swimming, and independent bacterial behaviour during adhesion, providing a uniform distribution over the surface.
Levels and health risk assessment of pesticides and metals in Lycium barbarum L. from different sources in Ningxia, China
Authors: Zhang Yahong , Qin Jiaqi , Wang Yan , Zhou Tongning , Feng Ningchuan , Ma Caihong , Zhu Meilin
Published: January 2022

The berries of Lycium barbarum L. (Goji) are widely used as a Chinese traditional herbal medicine and functional food because of their reported beneficial pharmacological effects. However, there are reports of Goji berries being contaminated by chemical residues that could pose a hazard to humans. In this study, samples of L. barbarum L. berries were collected from plantations in a genuine production area and supermarkets in Ningxia, China. The major hazardous chemicals, including pesticides (dichlorvos, omethoate, cypermethrin, fenvalerate, malathion, and deltamethrin) and metals (lead (Pb), cadmium (Cd), copper (Cu), nickel (Ni), zinc (Zn), and arsenic (As)), were quantified by gas chromatography and inductively coupled plasma-optical emission spectrometry. In addition, associated daily exposures and health risks were determined using deterministic and probabilistic assessments. The levels of five pesticides from the plantation samples were considerably lower than the maximum residue limits; only dichlorvos was detected in the supermarket samples, and deltamethrin was not detected in any samples. Cu, Zn, As, Pb, Ni and Cd were detected in samples from both sources. The hazard quotient values of individual hazardous chemicals and the hazard index of combined hazardous chemicals were considerably less than 1, indicating the absence of a non-carcinogenic effect of hazardous chemical exposures through Goji berry consumption. The R value of As was much less than 10–6, which shows that consumption of the Goji berries had no obvious carcinogenic risks. The potentially harmful effects of the L. barbarum L. are more likely from berries obtained from plantations than those from supermarkets, and metal exposure is more dangerous than pesticide exposure. However, on the basis of our analysis, no population would be exposed hazardous chemicals exceeding existing standards, and the factors most affecting the health risk were exposure frequency and As content.
Effects of channel size, wall wettability, and electric field strength on ion removal from water in nanochannels
Authors: Sofos Filippos , Karakasidis Theodoros E. , Sarris Ioannis E.
Published: January 2022

Molecular dynamics simulations are employed to estimate the effect of nanopore size, wall wettability, and the external field strength on successful ion removal from water solutions. It is demonstrated that the presence of ions, along with the additive effect of an external electric field, constitute a multivariate environment that affect fluidic interactions and facilitate, or block, ion drift to the walls. The potential energy is calculated across every channel case investigated, indicating possible ion localization, while electric field lines are presented, to reveal ion routing throughout the channel. The electric field strength is the dominant ion separation factor, while wall wettability strength, which characterizes if the walls are hydrophobic or hydrophilic has not been found to affect ion movement significantly at the scale studied here. Moreover, the diffusion coefficient values along the three dimensions are reported. Diffusion coefficients have shown a decreasing tendency as the external electric field increases, and do not seem to be affected by the degree of wall wettability at the scale investigated here.
Dengue surveillance using gravid oviposition sticky (GOS) trap and dengue non-structural 1 (NS1) antigen test in Malaysia: randomized controlled trial
Authors: Selvarajoo Sivaneswari , Liew Jonathan Wee Kent , Chua Tock H. , Tan Wing , Zaki Rafdzah Ahmad , Ngui Romano , Sulaiman Wan Yusoff Wan , Ong Poo Soon , Vythilingam Indra
Published: January 2022

Dengue remains a major public threat and existing dengue control/surveillance programs lack sensitivity and proactivity. More efficient methods are needed. A cluster randomized controlled trial was conducted for 18 months to determine the efficacy of using a combination of gravid oviposition sticky (GOS) traps and dengue non-structural 1 (NS1) antigen for early surveillance of dengue among Aedes mosquito. Eight residential apartments were randomly assigned into intervention and control groups. GOS traps were placed at the intervention apartments weekly to trap Aedes mosquitoes and these tested for dengue NS1 antigen. When dengue-positive pool was detected, the community were notified and advised to execute protective measures. Fewer dengue cases were recorded in the intervention group than the control. Detection of NS1-positive mosquitoes was significantly associated with GOS Aedes index (rs = 0.68, P < 0.01) and occurrence of dengue cases (rs = 0.31, P < 0.01). Participants’ knowledge, attitude, and practice (KAP) toward dengue control indicated significant improvement for knowledge (P < 0.01), practice (P < 0.01) and total scores (P < 0.01). Most respondents thought this surveillance method is good (81.2%) and supported its use nationwide. Thus, GOS trap and dengue NS1 antigen test can supplement the current dengue surveillance/control, in alignment with the advocated integrated vector management for reducing Aedes-borne diseases.
Enhanced multimodal biometric recognition approach for smart cities based on an optimized fuzzy genetic algorithm
Authors: Rajasekar Vani , Predić Bratislav , Saracevic Muzafer , Elhoseny Mohamed , Karabasevic Darjan , Stanujkic Dragisa , Jayapaul Premalatha
Published: January 2022

Biometric security is a major emerging concern in the field of data security. In recent years, research initiatives in the field of biometrics have grown at an exponential rate. The multimodal biometric technique with enhanced accuracy and recognition rate for smart cities is still a challenging issue. This paper proposes an enhanced multimodal biometric technique for a smart city that is based on score-level fusion. Specifically, the proposed approach provides a solution to the existing challenges by providing a multimodal fusion technique with an optimized fuzzy genetic algorithm providing enhanced performance. Experiments with different biometric environments reveal significant improvements over existing strategies. The result analysis shows that the proposed approach provides better performance in terms of the false acceptance rate, false rejection rate, equal error rate, precision, recall, and accuracy. The proposed scheme provides a higher accuracy rate of 99.88% and a lower equal error rate of 0.18%. The vital part of this approach is the inclusion of a fuzzy strategy with soft computing techniques known as an optimized fuzzy genetic algorithm.
Thyroid hormones regulate cardiac repolarization and QT-interval related gene expression in hiPSC cardiomyocytes
Authors: Ulivieri Alessandra , Lavra Luca , Magi Fiorenza , Morgante Alessandra , Calò Leonardo , Polisca Patrizio , Salehi Leila B. , Sciacchitano Salvatore
Published: January 2022

Prolongation of cardiac repolarization (QT interval) represents a dangerous and potentially life-threatening electrical event affecting the heart. Thyroid hormones (THs) are critical for cardiac development and heart function. However, little is known about THs influence on ventricular repolarization and controversial effects on QT prolongation are reported. Human iPSC-derived cardiomyocytes (hiPSC-CMs) and multielectrode array (MEA) systems were used to investigate the influence of 3,3′,5-triiodo-l-Thyronine (T3) and 3,3′,5,5′-tetraiodo-l-Thyronine (T4) on corrected Field Potential Duration (FPDc), the in vitro analog of QT interval, and on local extracellular Action Potential Duration (APD). Treatment with high THs doses induces a significant prolongation of both FPDc and APD, with the strongest increase reached after 24 h exposure. Preincubation with reverse T3 (rT3), a specific antagonist for nuclear TH receptor binding, significantly reduces T3 effects on FPDc, suggesting a TRs-mediated transcriptional mechanism. RNA-seq analysis showed significant deregulation in genes involved in cardiac repolarization pathways, including several QT-interval related genes. In conclusion, long-time administration of high THs doses induces FPDc prolongation in hiPSC-CMs probably through the modulation of genes linked to QT-interval regulation. These results open the way to investigate new potential diagnostic biomarkers and specific targeted therapies for cardiac repolarization dysfunctions.
Coagulation profile of human COVID-19 convalescent plasma
Authors: Klompas Allan M. , van Helmond Noud , Juskewitch Justin E. , Pruthi Rajiv K. , Sexton Matthew A. , Soto Juan C. Diaz , Klassen Stephen A. , Senese Katherine A. , van Buskirk Camille M. , Winters Jeffrey L. , Stubbs James R. , Hammel Scott A. , Joyner Michael J. , Senefeld Jonathon W.
Published: January 2022

Convalescent plasma is used to treat COVID-19. There are theoretical concerns about the impact of pro-coagulant factors in convalescent plasma on the coagulation cascade particularly among patients with severe COVID-19. The aim of this study was to evaluate the coagulation profile of COVID-19 convalescent plasma. Clotting times and coagulation factor assays were compared between fresh frozen plasma, COVID-19 convalescent plasma, and pathogen-reduced COVID-19 convalescent plasma. Measurements included prothrombin time, activated partial thromboplastin time, thrombin time, fibrinogen, D-dimer, von Willebrand factor activity, von Willebrand factor antigen, coagulation factors II, V, VII–XII, protein S activity, protein C antigen, and alpha-2 plasmin inhibitor. Clotting times and coagulation factor assays were not different between COVID-19 convalescent plasma and fresh frozen plasma, except for protein C antigen. When compared to fresh frozen plasma and regular convalescent plasma, pathogen reduction treatment increased activated partial thromboplastin time and thrombin time, while reducing fibrinogen, coagulation factor II, V, VIII, IX, X, XI, XII, protein S activity, and alpha-2 plasmin inhibitor. The coagulation profiles of human COVID-19 convalescent plasma and standard fresh frozen plasma are not different. Pathogen reduced COVID-19 convalescent plasma is associated with reduction of coagulation factors and a slight prolongation of coagulation times, as anticipated. A key limitation of the study is that the COVID-19 disease course of the convalesced donors was not characterized.
Formal derivation of the Laughlin function and its generalization for other topological phases of FQHE
Authors: Jacak Janusz E.
Published: January 2022

Using the braid symmetry we demonstrate the derivation of the Laughlin function for the main hierarchy 1/q of FQHE in the lowest Landau level of two-dimensional electron system with a mathematical rigour. This proves that the derivation of Laughlin function unavoidably requires some topological elements and cannot be completed within a local quantum mechanics, i.e., without global topological constraints imposed. The method shows the way for the generalization of this function onto other fractions from the general quantum Hall hierarchy. A generalization of the Laughlin function is here formulated.
Genome-wide in silico characterization and stress induced expression analysis of BcL-2 associated athanogene (BAG) family in Musa spp.
Authors: Dash Ashutosh , Ghag Siddhesh B.
Published: January 2022

Programmed cell death (PCD) is a genetically controlled process for the selective removal of damaged cells. Though understanding about plant PCD has improved over years, the mechanisms are yet to be fully deciphered. Among the several molecular players of PCD in plants, B cell lymphoma 2 (Bcl-2)-associated athanogene (BAG) family of co-chaperones are evolutionary conserved and regulate cell death, growth and development. In this study, we performed a genome-wide in silico analysis of the MusaBAG gene family in a globally important fruit crop banana. Thirteen MusaBAG genes were identified, out of which MusaBAG1, 7 and 8 genes were found to have multiple copies. MusaBAG genes were distributed on seven out of 11 chromosomes in banana. Except for one paralog of MusaBAG8 all the other 12 proteins have characteristic BAG domain. MusaBAG1, 2 and 4 have an additional ubiquitin-like domain whereas MusaBAG5-8 have a calmodulin binding motif. Most of the MusaBAG proteins were predicted to be localized in the nucleus and mitochondria or chloroplast. The in silico cis-regulatory element analysis suggested regulation associated with photoperiodic control, abiotic and biotic stress. The phylogenetic analysis revealed 2 major clusters. Digital gene expression analysis and quantitative real-time RT-PCR depicted the differential expression pattern of MusaBAG genes under abiotic and biotic stress conditions. Further studies are warranted to uncover the role of each of these proteins in growth, PCD and stress responses so as to explore them as candidate genes for engineering transgenic banana plants with improved agronomic traits.
Aging-related cerebral microvascular changes visualized using ultrasound localization microscopy in the living mouse
Authors: Lowerison Matthew R. , Sekaran Nathiya Vaithiyalingam Chandra , Zhang Wei , Dong Zhijie , Chen Xi , Llano Daniel A. , Song Pengfei
Published: January 2022

Aging-related cognitive decline is an emerging health crisis; however, no established unifying mechanism has been identified for the cognitive impairments seen in an aging population. A vascular hypothesis of cognitive decline has been proposed but is difficult to test given the requirement of high-fidelity microvascular imaging resolution with a broad and deep brain imaging field of view, which is restricted by the fundamental trade-off of imaging penetration depth and resolution. Super-resolution ultrasound localization microscopy (ULM) offers a potential solution by exploiting circulating microbubbles to achieve a vascular resolution approaching the capillary scale without sacrificing imaging depth. In this report, we apply ULM imaging to a mouse model of aging and quantify differences in cerebral vascularity, blood velocity, and vessel tortuosity across several brain regions. We found significant decreases in blood velocity, and significant increases in vascular tortuosity, across all brain regions in the aged cohort, and significant decreases in blood volume in the cerebral cortex. These data provide the first-ever ULM measurements of subcortical microvascular dynamics in vivo within the context of the aging brain and reveal that aging has a major impact on these measurements.