bluuebunny/crossref_metadata_2025 huggingface dataset:
Assessing arid Inland Lake Watershed Area and Vegetation Response to Multiple Temporal Scales of Drought Across the Ebinur Lake Watershed
Authors: Zhang Junyong , Ding Jianli , Wu Pengfei , Tan Jiao , Huang Shuai , Teng Dexiong , Cao Xiaoyi , Wang Jingzhe , Chen Wenqian
Published: January 2020

The Ebinur Lake watershed is an important ecological barrier for environmental changes in the Junggar Basin in Xinjiang Uygur Autonomous Region (XUAR). Due to the tremendous changes in the underlying surface environment of the watershed in the past few decades, the watershed has become a typical region of ecological degradation. Drought affects the surface dynamics and characterizes the regional dry and wet environments, while the dynamic variation in lakes and vegetation are indicators of dynamic changes in land surfaces. Thus, a quantitative assessment of the response of lakes and vegetation to drought conditions at multiple temporal scales is critical for assessing the potential impacts of regional climate change on terrestrial ecosystems and ecological restoration. The standardized precipitation evapotranspiration index (SPEI), the spectral water index (NDWI) and the normalized difference vegetation index (NDVI) were used to analyse the evolution of drought, the variation in lake surface area and the sustainable variation in vegetation. Furthermore, we quantitatively evaluated the response patterns of vegetation to droughts of multiple temporal scales (1-, 3-, 6-, 12-, 24-month). The conclusions showed that (1) overall, the area of Ebinur Lake experienced drastic fluctuations, and the lake area has decreased significantly since 2003, with a dynamic area of 817.63 km2 in 2003 and 384.60 km2 in 2015, and the lake area had shrank severely. (2) The interannual variation of wet and dry changed alternately during the observation period, and persistent drought events occurred from 2006 to 2010 across the Ebinur Lake watershed. (3) The vegetation area of cultivated land expanded continuously across the watershed, and the grassland degraded severely. (4) The changes in lake surface area are significantly correlated with the inflow water volume (correlation coefficient = 0.64, P < 0.01). (5) The vegetation of different terrestrial ecosystems exhibited heterogeneous responses to multiple temporal scales of drought in different seasons. The percentage was 72.78% of the total area, which showed a correlation between vegetation and drought conditions during the growing season period, and there were more impacts of drought on vegetation, with values as high as 64.33% of the area in summer, than those in other seasons.
Exploring the therapeutic potential of modern and ancestral phenylalanine/tyrosine ammonia-lyases as supplementary treatment of hereditary tyrosinemia
Authors: Hendrikse Natalie M. , Holmberg Larsson Albin , Svensson Gelius Stefan , Kuprin Sergei , Nordling Erik , Syrén Per-Olof
Published: January 2020

Phenylalanine/tyrosine ammonia-lyases (PAL/TALs) have been approved by the FDA for treatment of phenylketonuria and may harbour potential for complementary treatment of hereditary tyrosinemia Type I. Herein, we explore ancestral sequence reconstruction as an enzyme engineering tool to enhance the therapeutic potential of PAL/TALs. We reconstructed putative ancestors from fungi and compared their catalytic activity and stability to two modern fungal PAL/TALs. Surprisingly, most putative ancestors could be expressed as functional tetramers in Escherichia coli and thus retained their ability to oligomerize. All ancestral enzymes displayed increased thermostability compared to both modern enzymes, however, the increase in thermostability was accompanied by a loss in catalytic turnover. One reconstructed ancestral enzyme in particular could be interesting for further drug development, as its ratio of specific activities is more favourable towards tyrosine and it is more thermostable than both modern enzymes. Moreover, long-term stability assessment showed that this variant retained substantially more activity after prolonged incubation at 25 °C and 37 °C, as well as an increased resistance to incubation at 60 °C. Both of these factors are indicative of an extended shelf-life of biopharmaceuticals. We believe that ancestral sequence reconstruction has potential for enhancing the properties of enzyme therapeutics, especially with respect to stability. This work further illustrates that resurrection of putative ancestral oligomeric proteins is feasible and provides insight into the extent of conservation of a functional oligomerization surface area from ancestor to modern enzyme.
Rethinking Measures of Functional Connectivity via Feature Extraction
Authors: Mohanty Rosaleena , Sethares William A. , Nair Veena A. , Prabhakaran Vivek
Published: January 2020

Functional magnetic resonance imaging (fMRI)-based functional connectivity (FC) commonly characterizes the functional connections in the brain. Conventional quantification of FC by Pearson's correlation captures linear, time-domain dependencies among blood-oxygen-level-dependent (BOLD) signals. We examined measures to quantify FC by investigating: (i) Is Pearson's correlation sufficient to characterize FC? (ii) Can alternative measures better quantify FC? (iii) What are the implications of using alternative FC measures? FMRI analysis in healthy adult population suggested that: (i) Pearson's correlation cannot comprehensively capture BOLD inter-dependencies. (ii) Eight alternative FC measures were similarly consistent between task and resting-state fMRI, improved age-based classification and provided better association with behavioral outcomes. (iii) Formulated hypotheses were: first, in lieu of Pearson’s correlation, an augmented, composite and multi-metric definition of FC is more appropriate; second, canonical large-scale brain networks may depend on the chosen FC measure. A thorough notion of FC promises better understanding of variations within a given population.
Visceral fat metabolic activity evaluated by preoperative 18F-FDG PET/CT significantly affects axillary lymph node metastasis in postmenopausal luminal breast cancer
Authors: Pahk Kisoo , Joung Chanmin , Kim Sungeun
Published: January 2020

Obesity is known to increase breast cancer risk and aggressiveness in postmenopausal luminal breast cancer and obesity-driven dysfunctional metabolic activity in visceral adipose tissue (VAT) is considered as one of the principal underlying mechanism. We aimed to investigate the relationship between VAT metabolic activity evaluated by preoperative 18F-FDG PET/CT and axillary lymph node (ALN) metastasis in postmenopausal luminal breast cancer patients. In total, 173 patients were enrolled in study. They all underwent preoperative 18F-FDG PET/CT and surgery. VAT metabolic activity was defined as the maximum standardized uptake value (SUVmax) of VAT divided by the SUVmax of subcutaneous adipose tissue (V/S ratio). In luminal breast cancer, the patients with ALN metastasis showed significantly higher V/S ratio than the patients without ALN metastasis. Furthermore, V/S ratio was significantly associated with ALN metastasis in luminal breast cancer patients. Erythrocyte sedimentation rate, which reflect the systemic inflammation, was significantly higher in ALN metastasis group than the negative ALN metastasis group in luminal breast cancer patients and showed significant positive correlation with V/S ratio. V/S ratio significantly affects the ALN metastasis status in postmenopausal luminal breast cancer patients and it may be useful as a potential biomarker of obesity-driven systemic inflammation associated with tumor aggressiveness.
Jedi-1 deficiency increases sensory neuron excitability through a non-cell autonomous mechanism
Authors: Trevisan Alexandra J. , Bauer Mary Beth , Brindley Rebecca L. , Currie Kevin P. M. , Carter Bruce D.
Published: January 2020

The dorsal root ganglia (DRG) house the primary afferent neurons responsible for somatosensation, including pain. We previously identified Jedi-1 (PEAR1/MEGF12) as a phagocytic receptor expressed by satellite glia in the DRG involved in clearing apoptotic neurons during development. Here, we further investigated the function of this receptor in vivo using Jedi-1 null mice. In addition to satellite glia, we found Jedi-1 expression in perineurial glia and endothelial cells, but not in sensory neurons. We did not detect any morphological or functional changes in the glial cells or vasculature of Jedi-1 knockout mice. Surprisingly, we did observe changes in DRG neuron activity. In neurons from Jedi-1 knockout (KO) mice, there was an increase in the fraction of capsaicin-sensitive cells relative to wild type (WT) controls. Patch-clamp electrophysiology revealed an increase in excitability, with a shift from phasic to tonic action potential firing patterns in KO neurons. We also found alterations in the properties of voltage-gated sodium channel currents in Jedi-1 null neurons. These results provide new insight into the expression pattern of Jedi-1 in the peripheral nervous system and indicate that loss of Jedi-1 alters DRG neuron activity indirectly through an intercellular interaction between non-neuronal cells and sensory neurons.
A computational analysis of retinal image quality in eyes with keratoconus
Authors: Nilagiri Vinay Kumar , Metlapally Sangeetha , Schor Clifton M. , Bharadwaj Shrikant R.
Published: January 2020

Higher-order aberrations (HOA’s) are exaggerated in eyes with keratoconus but little is known about their impact on the retinal image quality (IQ) of these eyes. This computational study determined changes in IQ [peak IQ, best focus and depth of focus (DOF)] of 12 subjects with manifest keratoconus in both eyes (KCE cohort), 9 subjects with very asymmetric ectasia (VAE cohort) with and without their Rigid Gas Permeable contact lenses (RGP CL’s) and 20 age-matched controls, using a HOA-based through-focus analysis performed on the logNS IQ metric over 5 mm pupil diameter following cycloplegia. All IQ parameters were significantly worse in the KCE cohort with their native HOA’s, relative to controls and in the ectatic eye of the VAE cohort, relative to the fellow non-ectatic eye (p ≤ 0.008 for all). Reduction in HOA’s of these eyes with RGP CL’s resulted in a significant improvement in all IQ parameters but they all remained significantly poorer than controls (p ≤ 0.02 for all). The inter-subject variability of best focus and the DOF range were inversely related to peak IQ in these eyes (r = 0.85; p < 0.001). These results provide the optical basis for two clinical observations on keratoconus: (1) optical performance of keratoconic eyes are significantly better with RGP CL’s than with spectacles or unaided conditions and (2) the endpoint of subjective refraction is elusive in keratoconic eyes, relative to healthy controls or to the non-ectatic eye in bilaterally asymmetric ectasia.
Internal short circuit detection in Li-ion batteries using supervised machine learning
Authors: Naha Arunava , Khandelwal Ashish , Agarwal Samarth , Tagade Piyush , Hariharan Krishnan S. , Kaushik Anshul , Yadu Ankit , Kolake Subramanya Mayya , Han Seongho , Oh Bookeun
Published: January 2020

With the proliferation of Li-ion batteries in smart phones, safety is the main concern and an on-line detection of battery faults is much wanting. Internal short circuit is a very critical issue that is often ascribed to be a cause of many accidents involving Li-ion batteries. A novel method that can detect the Internal short circuit in real time based on an advanced machine leaning approach, is proposed. Based on an equivalent electric circuit model, a set of features encompassing the physics of Li-ion cell with short circuit fault are identified and extracted from each charge-discharge cycle. The training feature set is generated with and without an external short-circuit resistance across the battery terminals. To emulate a real user scenario, internal short is induced by mechanical abuse. The testing feature set is generated from the battery charge-discharge data before and after the abuse. A random forest classifier is trained with the training feature set. The fault detection accuracy for the testing dataset is found to be more than 97%. The proposed algorithm does not interfere with the normal usage of the device, and the trained model can be implemented in any device for online fault detection.
Biomarker discovery for chronic liver diseases by multi-omics – a preclinical case study
Authors: Veyel Daniel , Wenger Kathrin , Broermann Andre , Bretschneider Tom , Luippold Andreas H. , Krawczyk Bartlomiej , Rist Wolfgang , Simon Eric
Published: January 2020

Nonalcoholic steatohepatitis (NASH) is a major cause of liver fibrosis with increasing prevalence worldwide. Currently there are no approved drugs available. The development of new therapies is difficult as diagnosis and staging requires biopsies. Consequently, predictive plasma biomarkers would be useful for drug development. Here we present a multi-omics approach to characterize the molecular pathophysiology and to identify new plasma biomarkers in a choline-deficient L-amino acid-defined diet rat NASH model. We analyzed liver samples by RNA-Seq and proteomics, revealing disease relevant signatures and a high correlation between mRNA and protein changes. Comparison to human data showed an overlap of inflammatory, metabolic, and developmental pathways. Using proteomics analysis of plasma we identified mainly secreted proteins that correlate with liver RNA and protein levels. We developed a multi-dimensional attribute ranking approach integrating multi-omics data with liver histology and prior knowledge uncovering known human markers, but also novel candidates. Using regression analysis, we show that the top-ranked markers were highly predictive for fibrosis in our model and hence can serve as preclinical plasma biomarkers. Our approach presented here illustrates the power of multi-omics analyses combined with plasma proteomics and is readily applicable to human biomarker discovery.
CANCERSIGN: a user-friendly and robust tool for identification and classification of mutational signatures and patterns in cancer genomes
Authors: Bayati Masroor , Rabiee Hamid R. , Mehrbod Mehrdad , Vafaee Fatemeh , Ebrahimi Diako , Forrest Alistair R. R. , Alinejad-Rokny Hamid
Published: January 2020

Analysis of cancer mutational signatures have been instrumental in identification of responsible endogenous and exogenous molecular processes in cancer. The quantitative approach used to deconvolute mutational signatures is becoming an integral part of cancer research. Therefore, development of a stand-alone tool with a user-friendly interface for analysis of cancer mutational signatures is necessary. In this manuscript we introduce CANCERSIGN, which enables users to identify 3-mer and 5-mer mutational signatures within whole genome, whole exome or pooled samples. Additionally, this tool enables users to perform clustering on tumor samples based on the proportion of mutational signatures in each sample. Using CANCERSIGN, we analysed all the whole genome somatic mutation datasets profiled by the International Cancer Genome Consortium (ICGC) and identified a number of novel signatures. By examining signatures found in exonic and non-exonic regions of the genome using WGS and comparing this to signatures found in WES data we observe that WGS can identify additional non-exonic signatures that are enriched in the non-coding regions of the genome while the deeper sequencing of WES may help identify weak signatures that are otherwise missed in shallower WGS data.
Probiotics and Maternal Mental Health: A Randomised Controlled Trial among Pregnant Women with Obesity
Authors: Dawe Julia P. , McCowan Lesley M. E. , Wilson Jess , Okesene-Gafa Karaponi A. M. , Serlachius Anna S.
Published: January 2020

Poor maternal mental health has been associated with a myriad of pregnancy and child health complications. Obesity in pregnancy is known to increase one’s risk of experiencing poor maternal mental health and associated physical and mental health complications. Probiotics may represent a novel approach to intervene in poor mental health and obesity. We conducted this pre-specified secondary analysis of the Healthy Mums and Babies (HUMBA) randomised controlled trial to investigate whether probiotics would improve maternal mental health outcomes up to 36 weeks of pregnancy. Two-hundred-and-thirty pregnant women with obesity (BMI ≥ 30.0 kg/m2) were recruited and randomised to receive probiotic (Lactobacillus rhamnosus GG and Bifidobacterium lactis BB12, minimum 6.5 × 109 CFU) or placebo capsules. Depression, anxiety, and functional health and well-being were assessed at baseline (120−176 weeks’ gestation) and 36 weeks of pregnancy. Depression scores remained stable and did not differ between the probiotic (M = 7.18, SD = 3.80) and placebo groups (M = 6.76, SD = 4.65) at 36 weeks (p-values > 0.05). Anxiety and physical well-being scores worsened over time irrespective of group allocation, and mental well-being scores did not differ between the two groups at 36 weeks. Probiotics did not improve mental health outcomes in this multi-ethnic cohort of pregnant women with obesity.
Fusion transcripts in normal human cortex increase with age and show distinct genomic features for single cells and tissues
Authors: Mehani Bharati , Narta Kiran , Paul Deepanjan , Raj Anurag , Kumar Deepak , Sharma Anchal , Kaurani Lalit , Nayak Subhashree , Dash Debasis , Suri Ashish , Sarkar Chitra , Mukhopadhyay Arijit
Published: January 2020

Fusion transcripts can contribute to diversity of molecular networks in the human cortex. In this study, we explored the occurrence of fusion transcripts in normal human cortex along with single neurons and astrocytes. We identified 1305 non-redundant fusion events from 388 transcriptomes representing 59 human cortices and 329 single cells. Our results indicate while the majority of fusion transcripts in human cortex are intra-chromosomal (85%), events found in single neurons and astrocytes were primarily inter-chromosomal (80%). The number of fusions in single neurons was significantly higher than that in single astrocytes (p < 0.05), indicating fusion as a possible contributor towards transcriptome diversity in neuronal cells. The identified fusions were largely private and 4 specific recurring events were found both in cortex and in single neurons but not in astrocytes. We found a significant increase in the number of fusion transcripts in human brain with increasing age both in single cells and whole cortex (p < 0.0005 and < 0.005, respectively). This is likely one of the many possible contributors for the inherent plasticity of the adult brain. The fusion transcripts in fetal brain were enriched for genes for long-term depression; while those in adult brain involved genes enriched for long-term potentiation pathways. Our findings demonstrate fusion transcripts are naturally occurring phenomenon spanning across the health-disease continuum, and likely contribute to the diverse molecular network of human brain.
GABA potentiate the immunoregulatory effects of Lactobacillus brevis BGZLS10-17 via ATG5-dependent autophagy in vitro
Authors: Bajić Svetlana Soković , Đokić Jelena , Dinić Miroslav , Tomić Sergej , Popović Nikola , Brdarić Emilija , Golić Nataša , Tolinački Maja
Published: January 2020

The characterization of mechanisms involved in the positive effects of probiotic bacteria in various pathophysiological conditions is a prerogative for their safe and efficient application in biomedicine. We have investigated the immunological effects of live bacteria-free supernatant collected from GABA-producing Lactobacillus brevis BGZLS10-17 on Concanavalin A-stimulated mesenteric lymph node cells (MLNC), an in vitro model of activated immune cells. We have shown that GABA containing and GABA-free supernatant of Lactobacillus brevis BGZLS10-17 have strong immunoregulatory effects on MLNC. Further, GABA produced by this strain exhibit additional inhibitory effects on proliferation, IFN-γ and IL-17 production by MLNC, and the expression of MHCII and CD80 on antigen presenting cells. At the other hand, GABA-containing supernatants displayed the strongest stimulatory effects on the expression of immunoregulatory molecules, such as Foxp3+, IL-10, TGF-β, CTLA4 and SIRP-α. By looking for the mechanisms of actions, we found that supernatants produced by BGZLS10-17 induce autophagy in different MLNC, such as CD4+ and CD8+ T lymphocytes, NK and NKT cells, as well as antigen presenting cells. Further, we showed that the stimulation of Foxp3+, IL-10 and TGF-β expression by BGZLS10-17 produced GABA is completely mediated by the induction of ATG5 dependent autophagy, and that other molecules in the supernatants display GABA-, ATG5-, Foxp3+-, IL-10- and TGF-β- independent, immunoregulatory effects.
The mechanism of how CD95/Fas activates the Type I IFN/STAT1 axis, driving cancer stemness in breast cancer
Authors: Qadir Abdul S. , Stults Austin M. , Murmann Andrea E. , Peter Marcus E.
Published: January 2020

CD95/Fas is an apoptosis inducing death receptor. However, it also has multiple nonapoptotic activities that are tumorigenic. Chronic stimulation of CD95 on breast cancer cells can increase their cancer initiating capacity through activation of a type I interferon (IFN-I)/STAT1 pathway when caspases are inhibited. We now show that this activity relies on the canonical components of the CD95 death-inducing signaling complex, FADD and caspase-8, and on the activation of NF-κB. We identified caspase-2 as the antagonistic caspase that downregulates IFN-I production. Once produced, IFN-Is bind to their receptors activating both STAT1 and STAT2 resulting in upregulation of the double stranded (ds)RNA sensor proteins RIG-I and MDA5, and a release of a subset of endogenous retroviruses. Thus, CD95 is part of a complex cell autonomous regulatory network that involves activation of innate immune components that drive cancer stemness and contribute to therapy resistance.
Ancient DNA and high-resolution chronometry reveal a long-term human role in the historical diversity and biogeography of the Bahamian hutia
Authors: Oswald Jessica A. , Allen Julie M. , LeFebvre Michelle J. , Stucky Brian J. , Folk Ryan A. , Albury Nancy A. , Morgan Gary S. , Guralnick Robert P. , Steadman David W.
Published: January 2020

Quaternary paleontological and archaeological evidence often is crucial for uncovering the historical mechanisms shaping modern diversity and distributions. We take an interdisciplinary approach using multiple lines of evidence to understand how past human activity has shaped long-term animal diversity in an island system. Islands afford unique opportunities for such studies given their robust fossil and archaeological records. Herein, we examine the only non-volant terrestrial mammal endemic to the Bahamian Archipelago, the hutiaGeocapromys ingrahami. This capromyine rodent once inhabited many islands but is now restricted to several small cays. Radiocarbon dated fossils indicate that hutias were present on the Great Bahama Bank islands before humans arrived at AD ~800–1000; all dates from other islands post-date human arrival. Using ancient DNA from a subset of these fossils, along with modern representatives of Bahamian hutia and related taxa, we develop a fossil-calibrated phylogeny. We found little genetic divergence among individuals from within either the northern or southern Bahamas but discovered a relatively deep North-South divergence (~750 ka). This result, combined with radiocarbon dating and archaeological evidence, reveals a pre-human biogeographic divergence, and an unexpected human role in shaping Bahamian hutia diversity and biogeography across islands.
Task-dependent fMRI decoder with the power to extend Gabor patch results to Natural images
Authors: Tsushima Yoshiaki , Sawahata Yasuhito , Komine Kazuteru
Published: January 2020

Scientists are often asked to what extent a simple finding in a laboratory can be generalized to complicated phenomena in our daily lives. The same is equally true of vision science; numerous critical discoveries about our visual system have been made using very simple visual images, such as Gabor patches, but to what extent can these findings be applied to more natural images? Here, we used the fMRI decoding technique and directly tested whether the findings obtained with primitive visual stimuli (Gabor patches) were applicable to natural images. In the fMRI experiments, participants performed depth and resolution tasks with both Gabor patches and natural images. We created a fMRI decoder made from the results of the Gabor patch experiments that classified a brain activity pattern into the depth or resolution task, and then examined how successful the task-dependent decoder could sort a brain activity pattern in the natural image experiment into the depth or resolution task. As a result, we found that the task-dependent decoder constructed from Gabor patch experiments could predict which task (depth or resolution task) a participant was engaged in the natural image experiments, especially in the V3 and middle temporal (MT+) areas of the brain. This is consistent with previous researches on the cortical activation relating to depth perception rather than perceptual processing of display resolution. These results provide firm evidence that fMRI decoding technique possesses the power to evaluate the application of Gabor patch results (laboratory findings) to the natural images (everyday affairs), representing a new approach for studying the mechanism of visual perception.
In Vitro Functional and Structural Characterization of A Synthetic Clinical Pulmonary Surfactant with Enhanced Resistance to Inhibition
Authors: Echaide Mercedes , Autilio Chiara , López-Rodríguez Elena , Cruz Antonio , Pérez-Gil Jesús
Published: January 2020

CHF5633 is a novel synthetic clinical pulmonary surfactant preparation composed by two phospholipid species, dipalmitoyl phosphatidylcholine (DPPC) and palmitoyloleoyl phosphatidylglycerol (POPG), and synthetic analogues of the hydrophobic surfactant proteins SP-B and SP-C. In this study, the interfacial properties of CHF5633 in the absence and in the presence of inhibitory serum proteins have been assessed in comparison with a native surfactant purified from porcine lungs and with poractant alpha, a widely used clinical surfactant preparation. The study of the spreading properties of CHF5633 in a Wilhelmy balance, its ability to adsorb and accumulate at air-liquid interfaces as revealed by a multiwell fluorescence assay, and its dynamic behavior under breathing-like compression-expansion cycling in a Captive Bubble Surfactometer (CBS), all revealed that CHF5633 exhibits a good behavior to reduce and sustain surface tensions to values below 5 mN/m. CHF5633 shows somehow slower initial interfacial adsorption than native surfactant or poractant alpha, but a better resistance to inhibition by serum proteins than the animal-derived clinical surfactant, comparable to that of the full native surfactant complex. Interfacial CHF5633 films formed in a Langmuir-Blodgett balance coupled with epifluorescence microscopy revealed similar propensity to segregate condensed lipid domains under compression than films made by native porcine surfactant or poractant alpha. This ability of CHF5633 to segregate condensed lipid phases can be related with a marked thermotropic transition from ordered to disordered membrane phases as exhibited by differential scanning calorimetry (DSC) of CHF5633 suspensions, occurring at similar temperatures but with higher associated enthalpy than that shown by poractant alpha. The good interfacial behavior of CHF5633 tested under physiologically meaningful conditions in vitro and its higher resistance to inactivation by serum proteins, together with its standardized and well-defined composition, makes it a particularly useful therapeutic preparation to be applied in situations associated with lung inflammation and edema, alone or in combined strategies to exploit surfactant-facilitated drug delivery.
Cerebral glucose metabolism and Cerebral blood flow in thyroid dysfunction: An Activation Likelihood Estimation Meta-analysis
Authors: Pak Kyoungjune , Kim Mijin , Kim Keunyoung , Kim Bo Hyun , Kim Seong-Jang , Kim In Joo
Published: January 2020

Thyroid dysfunction is frequently associated with functional disturbances of the brain. We performed a meta-analysis of previous positron emission tomography and single-photon emission computed tomography studies using a coordinate-based technique of activation-likelihood estimation (ALE) to investigate the potential background of neuropsychiatric complications in patients with hypo- and hyperthyroidism. We performed a systematic search of MEDLINE and EMBASE for English-language publications using the keywords of “positron emission tomography”, “single-photon emission computed tomography”, and “thyroid”. The software GingerALE ver 2.3.6 was used to transform all reported coordinates into stereotactic Montreal Neurological Institute space. A threshold of uncorrected p < 0.001 (minimum volume of 200 mm3) was applied to the resulting ALE map using cerebral metabolic rate of glucose (CMRglu), and cerebral blood flow (CBF). Six studies were eligible for inclusion in the study; 4 studies of cerebral metabolic rate of CMRglu, and 2 studies of CBF. In hypothyroidism, significant decreases in CMRglu were identified in 3 clusters including left anterior cingulate, right inferior occipital gyrus, and right cuneus. In hyperthyroidism, a significant decrease in CMRglu was identified in right superior frontal gyrus. In hypothyroidism, a significant decrease in CBF was observed in left postcentral gyrus. In conclusion, several brain regions showed altered CMRglu and CBF in patients with thyroid dysfunction compared with euthyroid controls. These findings might account for underlying mechanisms of thyroid hormones on psychological and physiological effects on brain.
The ability of damselfish to distinguish between dangerous and harmless sea snakes
Authors: Goiran Claire , Shine Richard
Published: January 2020

In defence of their nests or territories, damselfish (Pomacentridae) attack even large and potentially dangerous intruders. The Indo-Pacific region contains many species of sea snakes, some of which eat damselfish whereas others do not. Can the fishes identify which sea snake taxa pose a threat? We recorded responses of damselfishes to natural encounters with five species of snakes in two shallow bays near Noumea, New Caledonia. Attacks by fishes were performed mostly by demersal territorial species of damselfish, and were non-random with respect to the species, size, sex and colouration of the snakes involved. The most common target of attack was Emydocephalus annulatus, a specialist egg-eater that poses no danger to adult fishes. Individuals of a generalist predator (Aipysurus duboisii) that were melanic (and thus resembled E. annulatus in colour) attracted more attacks than did paler individuals. Larger faster-swimming snake species (Aipysurus laevis, Laticauda saintgironsi) were watched but not attacked, or were actively avoided (Hydrophis major), even though only one of these species (A. laevis) eats pomacentrids. Attacks were more common towards female snakes rather than males, likely reflecting slower swimming speeds in females. In summary, damselfishes distinguish between sea snake species using cues such as size, colour and behaviour, but the fishes sometimes make mistakes.
The protandric life history of the Northern spot shrimp Pandalus platyceros: molecular insights and implications for fishery management
Authors: Levy Tom , Tamone Sherry L. , Manor Rivka , Bower Esther D. , Sagi Amir
Published: January 2020

The Northern spot shrimp,Pandalus platyceros, a protandric hermaphrodite of commercial importance in North America, is the primary target species for shrimp fisheries within Southeast Alaska. Fishery data obtained from the Alaska Department of Fish and Game indicate that spot shrimp populations have been declining significantly over the past 25 years. We collected spot shrimps in Southeast Alaska and measured reproductive-related morphological, gonadal and molecular changes during the entire life history. Theappendix masculina, a major sexual morphological indicator, is indicative of the reproductive phase of the animal, lengthening during maturation from juvenile to the male phase and then gradually shortening throughout the transitional stages until its complete disappearance upon transformation to a female. This morphological change occurs in parallel with the degeneration of testicular tissue in the ovotestis and enhanced ovarian vitellogenesis. Moreover, we obtained the entire mRNA sequence of the yolk protein precursor, vitellogenin, and monitored its transcript levels throughout the entire shrimp life-cycle. Vitellogenin transcript levels in the hepatopancreas increased in the early transitional stage until reaching a peak prior to extruding eggs. Such transcriptomic analyses, coupled with a comprehensive description of the gonad, external sex characters and timing of the reproductive life history of spot shrimps contribute to a better understanding of the hermaphroditic reproduction process in the cold Southeast Alaskan waters. This knowledge can contribute to a revision of current conservation efforts to maintain wild populations sustainable for both commercial and ecological considerations.
Not all cicadas increase thermal tolerance in response to a temperature gradient in metropolitan Seoul
Authors: Nguyen Hoa Quynh , Serret Hortense , Bae Yoonhyuk , Ji Seongmin , Chae Soyeon , Kim Ye Inn , Ha Jeongjoo , Jang Yikweon
Published: January 2020

Rapid anthropogenic alterations caused by urbanization are increasing temperatures in urban cores, a phenomenon known as the urban heat island (UHI) effect. Two cicada species, Cryptotympana atrata and Hyalessa fuscata (Hemiptera: Cicadidae), are abundant in metropolitan Seoul where their population densities correlate strongly with UHI intensities. Such a positive correlation between cicada density and UHI intensity may be possible if cicada abundance is linked to a certain thermal tolerance. We tested this hypothesis by investigating variation in morphology and thermal responses of two cicada species along a thermal gradient in Seoul and surrounding areas. The morphological responses were measured by metrics such as length, thorax width and depth, and mass. The thermal responses were measured in terms of minimum flight temperature, maximum voluntary temperature and heat torpor temperature. First, we observed a species-specific variation in thermal responses, in which C. atrata displayed a higher thermal threshold for maximum voluntary and heat torpor temperatures than H. fuscata. Second, a positive association between temperature conditions and body sizes were displayed in females H. fuscata, but not in either conspecific males or C. atrata individuals. Third, C. atrata exhibited similar thermal responses regardless of habitat temperature, while H. fuscata in warmer areas showed an increase in heat tolerance. In addition, H. fuscata individuals with bigger thorax sizes were more heat-tolerant than those with smaller thoraxes. Overall, our research is the first to detect a variation in thermal responses and body size of H. fuscata individuals at a local scale. More investigations would be needed to better understand the adaptation mechanisms of insects linked to UHI effects.
Estimating hospital catchments from in-patient admission records: a spatial statistical approach applied to malaria
Authors: Alegana Victor A. , Khazenzi Cynthia , Akech Samuel O. , Snow Robert W.
Published: January 2020

Admission records are seldom used in sub-Saharan Africa to delineate hospital catchments for the spatial description of hospitalised disease events. We set out to investigate spatial hospital accessibility for severe malarial anaemia (SMA) and cerebral malaria (CM). Malaria admissions for children between 1 month and 14 years old were identified from prospective clinical surveillance data recorded routinely at four referral hospitals covering two complete years between December 2015 to November 2016 and November 2017 to October 2018. These were linked to census enumeration areas (EAs) with an age-structured population. A novel mathematical-statistical framework that included EAs with zero observations was used to predict hospital catchment for malaria admissions adjusting for spatial distance. From 5766 malaria admissions, 5486 (95.14%) were linked to specific EA address, of which 272 (5%) were classified as cerebral malaria while 1001 (10%) were severe malaria anaemia. Further, results suggest a marked geographic catchment of malaria admission around the four sentinel hospitals although the extent varied. The relative rate-ratio of hospitalisation was highest at <1-hour travel time for SMA and CM although this was lower outside the predicted hospital catchments. Delineation of catchments is important for planning emergency care delivery and in the use of hospital data to define epidemiological disease burdens. Further hospital and community-based studies on treatment-seeking pathways to hospitals for severe disease would improve our understanding of catchments.
Estimation of intracardiac shunts in young children with a novel indicator dilution technology
Authors: Sigurdsson Theodor Skuli , Lindberg Lars
Published: January 2020

Clinical evaluation of intracardiac shunts in children is not straightforward. Echocardiography can only diagnose the presence of a shunt but does not estimate the shunt ratio. This can be a critical factor that influences treatment options. In this single-center, prospective, observational, method-comparison study, we validate the ability of a novel monitoring device COstatus to estimate the intracardiac shunt ratio (Qp/Qs) of pulmonary (Qp) to systemic (Qs) blood flow in young children before and after corrective cardiac surgery. The indicator dilution technology COstatus monitor was compared to two other more invasive reference techniques, perivascular ultrasonic flow probes (placed around the pulmonary truncus and ascending aorta) and the oximetric shunt equation (using arterial and venous blood gases). Our study revealed that the COstatus monitor detected intracardiac shunts with high sensitivity and specificity but there was some underestimation of the shunt ratios compared to the reference techniques.
Influence of GRK5 gene polymorphisms on ritodrine efficacy and adverse drug events in preterm labor treatment
Authors: Chung Jee Eun , Yee Jeong , Hwang Han Sung , Park Jin Young , Lee Kyung Eun , Kim Young Ju , Gwak Hye Sun
Published: January 2020

The present prospective follow-up study aimed to evaluate the effects of GRK5 polymorphisms on ritodrine efficacy and adverse drug events (ADEs) in pregnant women undergoing preterm labor. A total of 162 women undergoing preterm labor were included in the study. Seven single nucleotide polymorphisms (SNPs) in the GRK5 gene (rs915120, rs2230345, rs2230349, rs7923896, rs1020672, rs4752308, and rs4752292) were assessed. Homozygous variant carriers of rs4752292 and rs1020672 had 0.6 times the hazard of delivery compared to wild-type allele carriers (95% confidence interval [CI], 0.41~0.99 and 0.38~0.99, respectively). In addition, homozygous variant carriers of rs4752292 and rs1020672 had 2.4-fold more (95% CI, 1.10~4.98) and 2.3-fold more (95% CI, 1.04~5.06) ADEs compared to those with the wild-type homozygotes, respectively. Among demographic variables, gestational age and modified Bishop score were significant factors associated with time to delivery, while body weight and maximum ritodrine infusion rate were significant factors associated with ADEs. In silico analysis showed that both rs4752292 and rs1020672 had the potential to affect mRNA splicing by alteration of splicing motifs. The present study shows that ritodrine efficacy and ADEs are associated with GRK5 gene polymorphisms in pregnant women undergoing preterm labor.
The habitual motion path theory: Evidence from cartilage volume reductions in the knee joint after 75 minutes of running
Authors: Willwacher Steffen , Mählich Daniela , Trudeau Matthieu B. , Hamill Joseph , Weir Gillian , Brüggemann Gert-Peter , Bratke Grischa
Published: January 2020

The habitual motion path theory predicts that humans tend to maintain their habitual motion path (HMP) during locomotion. The HMP is the path of least resistance of the joints defined by an individual’s musculoskeletal anatomy and passive tissue properties. Here we tested whether participants with higher HMP deviation and whether using footwear that increases HMP deviation during running show higher reductions of knee joint articular cartilage volume after 75 minutes of running. We quantified knee joint articular cartilage volumes before and after the run using a 3.0-Tesla MRI. We performed a 3D movement analysis of runners in order to quantify their HMP from a two-legged squat motion and the deviation from the HMP when running in different footwear conditions. We found significantly more cartilage volume reductions in the medial knee compartment and patella for participants with higher HMP deviation. We also found higher cartilage volume reductions on the medial tibia when runners wore a shoe that maximized their HMP deviation compared with the shoe that minmized their HMP deviation. Runners might benefit from reducing their HMP deviation and from selecting footwear by quantifying HMP deviation in order to minimize joint cartilage loading in sub-areas of the knee.
The benthic foraminiferal δ34S records flux and timing of paleo methane emissions
Authors: Borrelli C. , Gabitov R. I. , Liu M.-C. , Hertwig A. T. , Panieri G.
Published: January 2020

In modern environments, pore water geochemistry and modelling simulations allow the study of methane (CH4) sources and sinks at any geographic location. However, reconstructing CH4 dynamics in geological records is challenging. Here, we show that the benthic foraminiferal δ34S can be used to reconstruct the flux (i.e., diffusive vs. advective) and timing of CH4 emissions in fossil records. We measured the δ34S of Cassidulina neoteretis specimens from selected samples collected at Vestnesa Ridge, a methane cold seep site in the Arctic Ocean. Our results show lower benthic foraminiferal δ34S values (∼20‰) in the sample characterized by seawater conditions, whereas higher values (∼25–27‰) were measured in deeper samples as a consequence of the presence of past sulphate-methane transition zones. The correlation between δ34S and the bulk benthic foraminiferal δ13C supports this interpretation, whereas the foraminiferal δ18O-δ34S correlation indicates CH4 advection at the studied site during the Early Holocene and the Younger-Dryas – post-Bølling. This study highlights the potential of the benthic foraminiferal δ34S as a novel tool to reconstruct the flux of CH4 emissions in geological records and to indirectly date fossil seeps.
Prematurely aging mitochondrial DNA mutator mice display subchondral osteopenia and chondrocyte hypertrophy without further osteoarthritis features
Authors: Geurts Jeroen , Nasi Sonia , Distel Pascal , Müller-Gerbl Magdalena , Prolla Tomas A. , Kujoth Gregory C. , Walker Ulrich A. , Hügle Thomas
Published: January 2020

Mitochondrial mutations and dysfunction have been demonstrated in several age-related disorders including osteoarthritis, yet its relative contribution to pathogenesis remains unknown. Here we evaluated whether premature aging caused by accumulation of mitochondrial DNA mutations in PolgD275A mice predisposes to the development of knee osteoarthritis. Compared with wild type animals, homozygous PolgD275A mice displayed a specific bone phenotype characterized by osteopenia of epiphyseal trabecular bone and subchondral cortical plate. Trabecular thickness was significantly associated with osteocyte apoptosis rates and osteoclasts numbers were increased in subchondral bone tissues. While chondrocyte apoptosis rates in articular and growth plate cartilage were similar between groups, homozygous mitochondrial DNA mutator mice displayed elevated numbers of hypertrophic chondrocytes in articular calcified cartilage. Low grade cartilage degeneration, predominantly loss of proteoglycans, was present in all genotypes and the development of osteoarthritis features was not found accelerated in premature aging. Somatically acquired mitochondrial DNA mutations predispose to elevated subchondral bone turnover and hypertrophy in calcified cartilage, yet additional mechanical or metabolic stimuli would seem required for induction and accelerated progression of aging-associated osteoarthritis.
Microclimatic effects on alpine plant communities and flower-visitor interactions
Authors: Ohler Lisa-Maria , Lechleitner Martin , Junker Robert R.
Published: January 2020

High-alpine ecosystems are commonly assumed to be particularly endangered by climate warming. Recent research, however, suggests that the heterogeneous topography of alpine landscapes provide microclimatic niches for alpine plants (i.e. soil temperatures that support the establishment and reproduction of species). Whether the microclimatic heterogeneity also affects diversity or species interactions on higher trophic levels remains unknown. Here we show that variation in mean seasonal soil temperature within an alpine pasture is within the same range as in plots differing in nearly 500 m in elevation. This pronounced heterogeneity of soil temperature among plots affected the spatial distribution of flowering plant species in our study area with a higher plant richness and cover in warmer plots. This increased plant productivity in warmer plots positively affected richness of flower visitor taxa as well as interaction frequency. Additionally, flower-visitor networks were more generalized in plots with higher plant cover. These results suggest that soil temperature directly affects plant diversity and productivity and indirectly affects network stability. The strong effect of heterogeneous soil temperature on plant communities and their interaction partners may also mitigate climate warming impacts by enabling plants to track their suitable temperature niches within a confined area.
A class I cytosolic HSP20 of rice enhances heat and salt tolerance in different organisms
Authors: Guo Liu-Ming , Li Jing , He Jing , Liu Han , Zhang Heng-Mu
Published: January 2020

Small heat shock proteins (sHSPs) have been thought to function as chaperones, protecting their targets from denaturation and aggregation when organisms are subjected to various biotic and abiotic stresses. We previously reported an sHSP from Oryza sativa (OsHSP20) that homodimerizes and forms granules within the cytoplasm but its function was unclear. We now show that OsHSP20 transcripts were significantly up-regulated by heat shock and high salinity but not by drought. A recombinant protein was purified and shown to inhibit the thermal aggregation of the mitochondrial malate dehydrogenase (MDH) enzyme in vitro, and this molecular chaperone activity suggested that OsHSP20 might be involved in stress resistance. Heterologous expression of OsHSP20 in Escherichia coli or Pichia pastoris cells enhanced heat and salt stress tolerance when compared with the control cultures. Transgenic rice plants constitutively overexpressing OsHSP20 and exposed to heat and salt treatments had longer roots and higher germination rates than those of control plants. A series of assays using its truncated mutants showed that its N-terminal arm plus the ACD domain was crucial for its homodimerization, molecular chaperone activity in vitro, and stress tolerance in vivo. The results supported the viewpoint that OsHSP20 could confer heat and salt tolerance by its molecular chaperone activity in different organisms and also provided a more thorough characterization of HSP20-mediated stress tolerance in O. sativa.