bluuebunny/crossref_metadata_2025 huggingface dataset:
Supplementary Figure Legends from Cellular Origin, Tumor Progression, and Pathogenic Mechanisms of Cutaneous Neurofibromas Revealed by Mice with Nf1 Knockout in Boundary Cap Cells
Authors: Radomska Katarzyna J. , Coulpier Fanny , Gresset Aurelie , Schmitt Alain , Debbiche Amal , Lemoine Sophie , Wolkenstein Pierre , Vallat Jean-Michel , Charnay Patrick , Topilko Piotr
Published: April 2023

Supplementary Figure Legends
Supplementary Fig. S6 from Enhancing the Potency and Specificity of Engineered T Cells for Cancer Treatment
Authors: Sukumaran Sujita , Watanabe Norihiro , Bajgain Pradip , Raja Kanchana , Mohammed Somala , Fisher William E. , Brenner Malcolm K. , Leen Ann M. , Vera Juan F.
Published: April 2023

Levels of IL4 and TGFβ cytokines produced by CAPAN-1 PSCA/TGFβ/IL4 cell line
Supplementary Fig. S5 from Enhancing the Potency and Specificity of Engineered T Cells for Cancer Treatment
Authors: Sukumaran Sujita , Watanabe Norihiro , Bajgain Pradip , Raja Kanchana , Mohammed Somala , Fisher William E. , Brenner Malcolm K. , Leen Ann M. , Vera Juan F.
Published: April 2023

SmarT-cells isolated from CAPAN-1 PSCA/TGFβ/IL4 expressing tumors in mice contain both CD4+ and CD8+ T cell fractions
Table S1 from Epigenetic Identity in AML Depends on Disruption of Nonpromoter Regulatory Elements and Is Affected by Antagonistic Effects of Mutations in Epigenetic Modifiers
Authors: Glass Jacob L. , Hassane Duane , Wouters Bas J. , Kunimoto Hiroyoshi , Avellino Roberto , Garrett-Bakelman Francine E. , Guryanova Olga A. , Bowman Robert , Redlich Shira , Intlekofer Andrew M. , Meydan Cem , Qin Tingting , Fall Mame , Alonso Alicia , Guzman Monica L. , Valk Peter J.M. , Thompson Craig B. , Levine Ross , Elemento Olivier , Delwel Ruud , Melnick Ari , Figueroa Maria E.
Published: April 2023

Detailed information including ERRBS cluster identity, HELP cluster identity, cytogenetics, molecular profile, and limited profile of mutations and genetic perturbations.
Supplementary Data from MAPK Pathway Suppression Unmasks Latent DNA Repair Defects and Confers a Chemical Synthetic Vulnerability in BRAF-, NRAS-, and NF1-Mutant Melanomas
Authors: Maertens Ophélia , Kuzmickas Ryan , Manchester Haley E. , Emerson Chloe E. , Gavin Alessandra G. , Guild Caroline J. , Wong Terence C. , De Raedt Thomas , Bowman-Colin Christian , Hatchi Elodie , Garraway Levi A. , Flaherty Keith T. , Pathania Shailja , Elledge Stephen J. , Cichowski Karen
Published: April 2023

Supplementary Tables 1-3
Supplementary Tables S1-S7 from KEAP1/NFE2L2 Mutations Predict Lung Cancer Radiation Resistance That Can Be Targeted by Glutaminase Inhibition
Authors: Binkley Michael S. , Jeon Young-Jun , Nesselbush Monica , Moding Everett J. , Nabet Barzin Y. , Almanza Diego , Kunder Christian , Stehr Henning , Yoo Christopher H. , Rhee Siyeon , Xiang Michael , Chabon Jacob J. , Hamilton Emily , Kurtz David M. , Gojenola Linda , Owen Susie Grant , Ko Ryan B. , Shin June Ho , Maxim Peter G. , Lui Natalie S. , Backhus Leah M. , Berry Mark F. , Shrager Joseph B. , Ramchandran Kavitha J. , Padda Sukhmani K. , Das Millie , Neal Joel W. , Wakelee Heather A. , Alizadeh Ash A. , Loo Billy W. , Diehn Maximilian
Published: April 2023

Table S1 - S7
Table S2 from Exploiting the Therapeutic Interaction of WNT Pathway Activation and Asparaginase for Colorectal Cancer Therapy
Authors: Hinze Laura , Labrosse Roxane , Degar James , Han Teng , Schatoff Emma M. , Schreek Sabine , Karim Salmaan , McGuckin Connor , Sacher Joshua R. , Wagner Florence , Stanulla Martin , Yuan Chen , Sicinska Ewa , Giannakis Marios , Ng Kimmie , Dow Lukas E. , Gutierrez Alejandro
Published: April 2023

Supplementary Table 2
Table S1 from Exploiting the Therapeutic Interaction of WNT Pathway Activation and Asparaginase for Colorectal Cancer Therapy
Authors: Hinze Laura , Labrosse Roxane , Degar James , Han Teng , Schatoff Emma M. , Schreek Sabine , Karim Salmaan , McGuckin Connor , Sacher Joshua R. , Wagner Florence , Stanulla Martin , Yuan Chen , Sicinska Ewa , Giannakis Marios , Ng Kimmie , Dow Lukas E. , Gutierrez Alejandro
Published: April 2023

Supplementary Table 1
Table S1 from MYC Instructs and Maintains Pancreatic Adenocarcinoma Phenotype
Authors: Sodir Nicole M. , Kortlever Roderik M. , Barthet Valentin J.A. , Campos Tania , Pellegrinet Luca , Kupczak Steven , Anastasiou Panayiotis , Swigart Lamorna Brown , Soucek Laura , Arends Mark J. , Littlewood Trevor D. , Evan Gerard I.
Published: April 2023

Comparison of Myc-induced stromal phenotypes in KRasG12D-driven PanIN versus KRasG12D-driven lung adenoma
Supplementary Table 3 from Combined Proteomic and Genetic Interaction Mapping Reveals New RAS Effector Pathways and Susceptibilities
Authors: Kelly Marcus R. , Kostyrko Kaja , Han Kyuho , Mooney Nancie A. , Jeng Edwin E. , Spees Kaitlyn , Dinh Phuong T. , Abbott Keene L. , Gwinn Dana M. , Sweet-Cordero E. Alejandro , Bassik Michael C. , Jackson Peter K.
Published: April 2023

This spreadsheet contains 6 tabs, with each tab corresponding to a cell line and GO namespace. For each indicated bait (columns), all hits detected with FDR{less than or equal to}0.05 were searched for enrichment for the indicated term (row) using a background set of all protein-coding genes for which at least one GO term existed by Fisher's Exact Test. The values of the table are the FDRs derived from p-values by the Benjamini-Hochberg method.
Figure S11 from The Folate Cycle Enzyme MTHFR Is a Critical Regulator of Cell Response to MYC-Targeting Therapies
Authors: Su Angela , Ling Frank , Vaganay Camille , Sodaro Gaetano , Benaksas Chaïma , Dal Bello Reinaldo , Forget Antoine , Pardieu Bryann , Lin Kevin H. , Rutter Justine C. , Bassil Christopher F. , Fortin Gael , Pasanisi Justine , Antony-Debré Iléana , Alexe Gabriela , Benoist Jean-François , Pruvost Alain , Pikman Yana , Qi Jun , Schlageter Marie-Hélène , Micol Jean-Baptiste , Roti Giovanni , Cluzeau Thomas , Dombret Hervé , Preudhomme Claude , Fenouille Nina , Benajiba Lina , Golan Hava M. , Stegmaier Kimberly , Lobry Camille , Wood Kris C. , Itzykson Raphael , Puissant Alexandre
Published: April 2023

CRISPR screen hit validation.
Table S3 from Impaired Death Receptor Signaling in Leukemia Causes Antigen-Independent Resistance by Inducing CAR T-cell Dysfunction
Authors: Singh Nathan , Lee Yong Gu , Shestova Olga , Ravikumar Pranali , Hayer Katharina E. , Hong Seok Jae , Lu Xueqing Maggie , Pajarillo Raymone , Agarwal Sangya , Kuramitsu Shunichiro , Orlando Elena J. , Mueller Karen Thudium , Good Charly R. , Berger Shelley L. , Shalem Ophir , Weitzman Matthew D. , Frey Noelle V. , Maude Shannon L. , Grupp Stephan A. , June Carl H. , Gill Saar , Ruella Marco
Published: April 2023

Genes used to define exhaustion
Supplementary Data from The KRASG12C Inhibitor MRTX849 Provides Insight toward Therapeutic Susceptibility of KRAS-Mutant Cancers in Mouse Models and Patients
Authors: Hallin Jill , Engstrom Lars D. , Hargis Lauren , Calinisan Andrew , Aranda Ruth , Briere David M. , Sudhakar Niranjan , Bowcut Vickie , Baer Brian R. , Ballard Joshua A. , Burkard Michael R. , Fell Jay B. , Fischer John P. , Vigers Guy P. , Xue Yaohua , Gatto Sole , Fernandez-Banet Julio , Pavlicek Adam , Velastagui Karen , Chao Richard C. , Barton Jeremy , Pierobon Mariaelena , Baldelli Elisa , Patricoin Emanuel F. , Cassidy Douglas P. , Marx Matthew A. , Rybkin Igor I. , Johnson Melissa L. , Ou Sai-Hong Ignatius , Lito Piro , Papadopoulos Kyriakos P. , Jänne Pasi A. , Olson Peter , Christensen James G.
Published: April 2023

Supplementary methods and Tables
Supplementary Data from The KRASG12C Inhibitor MRTX849 Provides Insight toward Therapeutic Susceptibility of KRAS-Mutant Cancers in Mouse Models and Patients
Authors: Hallin Jill , Engstrom Lars D. , Hargis Lauren , Calinisan Andrew , Aranda Ruth , Briere David M. , Sudhakar Niranjan , Bowcut Vickie , Baer Brian R. , Ballard Joshua A. , Burkard Michael R. , Fell Jay B. , Fischer John P. , Vigers Guy P. , Xue Yaohua , Gatto Sole , Fernandez-Banet Julio , Pavlicek Adam , Velastagui Karen , Chao Richard C. , Barton Jeremy , Pierobon Mariaelena , Baldelli Elisa , Patricoin Emanuel F. , Cassidy Douglas P. , Marx Matthew A. , Rybkin Igor I. , Johnson Melissa L. , Ou Sai-Hong Ignatius , Lito Piro , Papadopoulos Kyriakos P. , Jänne Pasi A. , Olson Peter , Christensen James G.
Published: April 2023

Supplementary Table S7
Supplementary Data from The KRASG12C Inhibitor MRTX849 Provides Insight toward Therapeutic Susceptibility of KRAS-Mutant Cancers in Mouse Models and Patients
Authors: Hallin Jill , Engstrom Lars D. , Hargis Lauren , Calinisan Andrew , Aranda Ruth , Briere David M. , Sudhakar Niranjan , Bowcut Vickie , Baer Brian R. , Ballard Joshua A. , Burkard Michael R. , Fell Jay B. , Fischer John P. , Vigers Guy P. , Xue Yaohua , Gatto Sole , Fernandez-Banet Julio , Pavlicek Adam , Velastagui Karen , Chao Richard C. , Barton Jeremy , Pierobon Mariaelena , Baldelli Elisa , Patricoin Emanuel F. , Cassidy Douglas P. , Marx Matthew A. , Rybkin Igor I. , Johnson Melissa L. , Ou Sai-Hong Ignatius , Lito Piro , Papadopoulos Kyriakos P. , Jänne Pasi A. , Olson Peter , Christensen James G.
Published: April 2023

Supplementary Table S8
Supplementary Table 2 from EGFR Blockade Reverts Resistance to KRASG12C Inhibition in Colorectal Cancer
Authors: Amodio Vito , Yaeger Rona , Arcella Pamela , Cancelliere Carlotta , Lamba Simona , Lorenzato Annalisa , Arena Sabrina , Montone Monica , Mussolin Benedetta , Bian Yu , Whaley Adele , Pinnelli Marika , Murciano-Goroff Yonina R. , Vakiani Efsevia , Valeri Nicola , Liao Wei-Li , Bhalkikar Anuja , Thyparambil Sheeno , Zhao Hui-Yong , de Stanchina Elisa , Marsoni Silvia , Siena Salvatore , Bertotti Andrea , Trusolino Livio , Li Bob T. , Rosen Neal , Di Nicolantonio Federica , Bardelli Alberto , Misale Sandra
Published: April 2023

Supplementary Table 2
Supplementary Table 1 from EGFR Blockade Reverts Resistance to KRASG12C Inhibition in Colorectal Cancer
Authors: Amodio Vito , Yaeger Rona , Arcella Pamela , Cancelliere Carlotta , Lamba Simona , Lorenzato Annalisa , Arena Sabrina , Montone Monica , Mussolin Benedetta , Bian Yu , Whaley Adele , Pinnelli Marika , Murciano-Goroff Yonina R. , Vakiani Efsevia , Valeri Nicola , Liao Wei-Li , Bhalkikar Anuja , Thyparambil Sheeno , Zhao Hui-Yong , de Stanchina Elisa , Marsoni Silvia , Siena Salvatore , Bertotti Andrea , Trusolino Livio , Li Bob T. , Rosen Neal , Di Nicolantonio Federica , Bardelli Alberto , Misale Sandra
Published: April 2023

Supplementary Table 1
Supplementary Figure 2 from EGFR Blockade Reverts Resistance to KRASG12C Inhibition in Colorectal Cancer
Authors: Amodio Vito , Yaeger Rona , Arcella Pamela , Cancelliere Carlotta , Lamba Simona , Lorenzato Annalisa , Arena Sabrina , Montone Monica , Mussolin Benedetta , Bian Yu , Whaley Adele , Pinnelli Marika , Murciano-Goroff Yonina R. , Vakiani Efsevia , Valeri Nicola , Liao Wei-Li , Bhalkikar Anuja , Thyparambil Sheeno , Zhao Hui-Yong , de Stanchina Elisa , Marsoni Silvia , Siena Salvatore , Bertotti Andrea , Trusolino Livio , Li Bob T. , Rosen Neal , Di Nicolantonio Federica , Bardelli Alberto , Misale Sandra
Published: April 2023

Supplementary Figure 2
Supplementary Table S7 from Infant High-Grade Gliomas Comprise Multiple Subgroups Characterized by Novel Targetable Gene Fusions and Favorable Outcomes
Authors: Clarke Matthew , Mackay Alan , Ismer Britta , Pickles Jessica C. , Tatevossian Ruth G. , Newman Scott , Bale Tejus A. , Stoler Iris , Izquierdo Elisa , Temelso Sara , Carvalho Diana M. , Molinari Valeria , Burford Anna , Howell Louise , Virasami Alex , Fairchild Amy R. , Avery Aimee , Chalker Jane , Kristiansen Mark , Haupfear Kelly , Dalton James D. , Orisme Wilda , Wen Ji , Hubank Michael , Kurian Kathreena M. , Rowe Catherine , Maybury Mellissa , Crosier Stephen , Knipstein Jeffrey , Schüller Ulrich , Kordes Uwe , Kram David E. , Snuderl Matija , Bridges Leslie , Martin Andrew J. , Doey Lawrence J. , Al-Sarraj Safa , Chandler Christopher , Zebian Bassel , Cairns Claire , Natrajan Rachael , Boult Jessica K.R. , Robinson Simon P. , Sill Martin , Dunkel Ira J. , Gilheeney Stephen W. , Rosenblum Marc K. , Hughes Debbie , Proszek Paula Z. , Macdonald Tobey J. , Preusser Matthias , Haberler Christine , Slavc Irene , Packer Roger , Ng Ho-Keung , Caspi Shani , Popović Mara , Faganel Kotnik Barbara , Wood Matthew D. , Baird Lissa , Davare Monika Ashok , Solomon David A. , Olsen Thale Kristin , Brandal Petter , Farrell Michael , Cryan Jane B. , Capra Michael , Karremann Michael , Schittenhelm Jens , Schuhmann Martin U. , Ebinger Martin , Dinjens Winand N.M. , Kerl Kornelius , Hettmer Simone , Pietsch Torsten , Andreiuolo Felipe , Driever Pablo Hernáiz , Korshunov Andrey , Hiddingh Lotte , Worst Barbara C. , Sturm Dominik , Zuckermann Marc , Witt Olaf , Bloom Tabitha , Mitchell Clare , Miele Evelina , Colafati Giovanna Stefania , Diomedi-Camassei Francesca , Bailey Simon , Moore Andrew S. , Hassall Timothy E.G. , Lowis Stephen P. , Tsoli Maria , Cowley Mark J. , Ziegler David S. , Karajannis Matthias A. , Aquilina Kristian , Hargrave Darren R. , Carceller Fernando , Marshall Lynley V. , von Deimling Andreas , Kramm Christof M. , Pfister Stefan M. , Sahm Felix , Baker Suzanne J. , Mastronuzzi Angela , Carai Andrea , Vinci Maria , Capper David , Popov Sergey , Ellison David W. , Jacques Thomas S. , Jones David T.W. , Jones Chris
Published: April 2023

Supplementary Table S7
Supplementary Table S4 from Infant High-Grade Gliomas Comprise Multiple Subgroups Characterized by Novel Targetable Gene Fusions and Favorable Outcomes
Authors: Clarke Matthew , Mackay Alan , Ismer Britta , Pickles Jessica C. , Tatevossian Ruth G. , Newman Scott , Bale Tejus A. , Stoler Iris , Izquierdo Elisa , Temelso Sara , Carvalho Diana M. , Molinari Valeria , Burford Anna , Howell Louise , Virasami Alex , Fairchild Amy R. , Avery Aimee , Chalker Jane , Kristiansen Mark , Haupfear Kelly , Dalton James D. , Orisme Wilda , Wen Ji , Hubank Michael , Kurian Kathreena M. , Rowe Catherine , Maybury Mellissa , Crosier Stephen , Knipstein Jeffrey , Schüller Ulrich , Kordes Uwe , Kram David E. , Snuderl Matija , Bridges Leslie , Martin Andrew J. , Doey Lawrence J. , Al-Sarraj Safa , Chandler Christopher , Zebian Bassel , Cairns Claire , Natrajan Rachael , Boult Jessica K.R. , Robinson Simon P. , Sill Martin , Dunkel Ira J. , Gilheeney Stephen W. , Rosenblum Marc K. , Hughes Debbie , Proszek Paula Z. , Macdonald Tobey J. , Preusser Matthias , Haberler Christine , Slavc Irene , Packer Roger , Ng Ho-Keung , Caspi Shani , Popović Mara , Faganel Kotnik Barbara , Wood Matthew D. , Baird Lissa , Davare Monika Ashok , Solomon David A. , Olsen Thale Kristin , Brandal Petter , Farrell Michael , Cryan Jane B. , Capra Michael , Karremann Michael , Schittenhelm Jens , Schuhmann Martin U. , Ebinger Martin , Dinjens Winand N.M. , Kerl Kornelius , Hettmer Simone , Pietsch Torsten , Andreiuolo Felipe , Driever Pablo Hernáiz , Korshunov Andrey , Hiddingh Lotte , Worst Barbara C. , Sturm Dominik , Zuckermann Marc , Witt Olaf , Bloom Tabitha , Mitchell Clare , Miele Evelina , Colafati Giovanna Stefania , Diomedi-Camassei Francesca , Bailey Simon , Moore Andrew S. , Hassall Timothy E.G. , Lowis Stephen P. , Tsoli Maria , Cowley Mark J. , Ziegler David S. , Karajannis Matthias A. , Aquilina Kristian , Hargrave Darren R. , Carceller Fernando , Marshall Lynley V. , von Deimling Andreas , Kramm Christof M. , Pfister Stefan M. , Sahm Felix , Baker Suzanne J. , Mastronuzzi Angela , Carai Andrea , Vinci Maria , Capper David , Popov Sergey , Ellison David W. , Jacques Thomas S. , Jones David T.W. , Jones Chris
Published: April 2023

Supplementary Table S4
Supplementary Data from Single-Cell RNA Sequencing Reveals Stromal Evolution into LRRC15+ Myofibroblasts as a Determinant of Patient Response to Cancer Immunotherapy
Authors: Dominguez Claudia X. , Müller Sören , Keerthivasan Shilpa , Koeppen Hartmut , Hung Jeffrey , Gierke Sarah , Breart Beatrice , Foreman Oded , Bainbridge Travis W. , Castiglioni Alessandra , Senbabaoglu Yasin , Modrusan Zora , Liang Yuxin , Junttila Melissa R. , Klijn Christiaan , Bourgon Richard , Turley Shannon J.
Published: April 2023

Supplementary Figures
Supplementary Table 1 from HER2-Mediated Internalization of Cytotoxic Agents in ERBB2 Amplified or Mutant Lung Cancers
Authors: Li Bob T. , Michelini Flavia , Misale Sandra , Cocco Emiliano , Baldino Laura , Cai Yanyan , Shifman Sophie , Tu Hai-Yan , Myers Mackenzie L. , Xu Chongrui , Mattar Marissa , Khodos Inna , Little Megan , Qeriqi Besnik , Weitsman Gregory , Wilhem Clare J. , Lalani Alshad S. , Diala Irmina , Freedman Rachel A. , Lin Nancy U. , Solit David B. , Berger Michael F. , Barber Paul R. , Ng Tony , Offin Michael , Isbell James M. , Jones David R. , Yu Helena A. , Thyparambil Sheeno , Liao Wei-Li , Bhalkikar Anuja , Cecchi Fabiola , Hyman David M. , Lewis Jason S. , Buonocore Darren J. , Ho Alan L. , Makker Vicky , Reis-Filho Jorge S. , Razavi Pedram , Arcila Maria E. , Kris Mark G. , Poirier John T. , Shen Ronglai , Tsurutani Junji , Ulaner Gary A. , de Stanchina Elisa , Rosen Neal , Rudin Charles M. , Scaltriti Maurizio
Published: April 2023

Supplementary Table 1
Supplementary Fig 6 from HER2-Mediated Internalization of Cytotoxic Agents in ERBB2 Amplified or Mutant Lung Cancers
Authors: Li Bob T. , Michelini Flavia , Misale Sandra , Cocco Emiliano , Baldino Laura , Cai Yanyan , Shifman Sophie , Tu Hai-Yan , Myers Mackenzie L. , Xu Chongrui , Mattar Marissa , Khodos Inna , Little Megan , Qeriqi Besnik , Weitsman Gregory , Wilhem Clare J. , Lalani Alshad S. , Diala Irmina , Freedman Rachel A. , Lin Nancy U. , Solit David B. , Berger Michael F. , Barber Paul R. , Ng Tony , Offin Michael , Isbell James M. , Jones David R. , Yu Helena A. , Thyparambil Sheeno , Liao Wei-Li , Bhalkikar Anuja , Cecchi Fabiola , Hyman David M. , Lewis Jason S. , Buonocore Darren J. , Ho Alan L. , Makker Vicky , Reis-Filho Jorge S. , Razavi Pedram , Arcila Maria E. , Kris Mark G. , Poirier John T. , Shen Ronglai , Tsurutani Junji , Ulaner Gary A. , de Stanchina Elisa , Rosen Neal , Rudin Charles M. , Scaltriti Maurizio
Published: April 2023

Supplementary Fig 6
Figure S6 from Cell of Origin Influences Pancreatic Cancer Subtype
Authors: Flowers Brittany M. , Xu Hang , Mulligan Abigail S. , Hanson Kathryn J. , Seoane Jose A. , Vogel Hannes , Curtis Christina , Wood Laura D. , Attardi Laura D.
Published: April 2023

Cox proportional hazard analysis of the Canadian ICGC and TCGA cohorts
Supplementary Fig 1 from HER2-Mediated Internalization of Cytotoxic Agents in ERBB2 Amplified or Mutant Lung Cancers
Authors: Li Bob T. , Michelini Flavia , Misale Sandra , Cocco Emiliano , Baldino Laura , Cai Yanyan , Shifman Sophie , Tu Hai-Yan , Myers Mackenzie L. , Xu Chongrui , Mattar Marissa , Khodos Inna , Little Megan , Qeriqi Besnik , Weitsman Gregory , Wilhem Clare J. , Lalani Alshad S. , Diala Irmina , Freedman Rachel A. , Lin Nancy U. , Solit David B. , Berger Michael F. , Barber Paul R. , Ng Tony , Offin Michael , Isbell James M. , Jones David R. , Yu Helena A. , Thyparambil Sheeno , Liao Wei-Li , Bhalkikar Anuja , Cecchi Fabiola , Hyman David M. , Lewis Jason S. , Buonocore Darren J. , Ho Alan L. , Makker Vicky , Reis-Filho Jorge S. , Razavi Pedram , Arcila Maria E. , Kris Mark G. , Poirier John T. , Shen Ronglai , Tsurutani Junji , Ulaner Gary A. , de Stanchina Elisa , Rosen Neal , Rudin Charles M. , Scaltriti Maurizio
Published: April 2023

Supplementary Fig 1
Table S4 from Repression of the Type I Interferon Pathway Underlies MYC- and KRAS-Dependent Evasion of NK and B Cells in Pancreatic Ductal Adenocarcinoma
Authors: Muthalagu Nathiya , Monteverde Tiziana , Raffo-Iraolagoitia Ximena , Wiesheu Robert , Whyte Declan , Hedley Ann , Laing Sarah , Kruspig Björn , Upstill-Goddard Rosanna , Shaw Robin , Neidler Sarah , Rink Curtis , Karim Saadia A. , Gyuraszova Katarina , Nixon Colin , Clark William , Biankin Andrew V. , Carlin Leo M. , Coffelt Seth B. , Sansom Owen J. , Morton Jennifer P. , Murphy Daniel J.
Published: April 2023

Spreadsheet of genes co-regulated by MYC & Miz1 in KMC PDAC cells
Supplementary Material from Repression of the Type I Interferon Pathway Underlies MYC- and KRAS-Dependent Evasion of NK and B Cells in Pancreatic Ductal Adenocarcinoma
Authors: Muthalagu Nathiya , Monteverde Tiziana , Raffo-Iraolagoitia Ximena , Wiesheu Robert , Whyte Declan , Hedley Ann , Laing Sarah , Kruspig Björn , Upstill-Goddard Rosanna , Shaw Robin , Neidler Sarah , Rink Curtis , Karim Saadia A. , Gyuraszova Katarina , Nixon Colin , Clark William , Biankin Andrew V. , Carlin Leo M. , Coffelt Seth B. , Sansom Owen J. , Morton Jennifer P. , Murphy Daniel J.
Published: April 2023

6 supplementary Figures with legends under each; 3 Supplementary Tables; Supplementary Methods and References
Supplementary Table S1 from Circadian Regulator CLOCK Recruits Immune-Suppressive Microglia into the GBM Tumor Microenvironment
Authors: Chen Peiwen , Hsu Wen-Hao , Chang Andrew , Tan Zhi , Lan Zhengdao , Zhou Ashley , Spring Denise J. , Lang Frederick F. , Wang Y. Alan , DePinho Ronald A.
Published: April 2023

Table S1 is a list of primers used for qRT-­PCR analysis.
Supplementary Figure S2 from Circadian Regulator CLOCK Recruits Immune-Suppressive Microglia into the GBM Tumor Microenvironment
Authors: Chen Peiwen , Hsu Wen-Hao , Chang Andrew , Tan Zhi , Lan Zhengdao , Zhou Ashley , Spring Denise J. , Lang Frederick F. , Wang Y. Alan , DePinho Ronald A.
Published: April 2023

Figure S2 shows that CLOCK regulates GSC metabolism.
Supplementary Movie 2 (SM2) from Changes in Aged Fibroblast Lipid Metabolism Induce Age-Dependent Melanoma Cell Resistance to Targeted Therapy via the Fatty Acid Transporter FATP2
Authors: Alicea Gretchen M. , Rebecca Vito W. , Goldman Aaron R. , Fane Mitchell E. , Douglass Stephen M. , Behera Reeti , Webster Marie R. , Kugel Curtis H. , Ecker Brett L. , Caino M. Cecilia , Kossenkov Andrew V. , Tang Hsin-Yao , Frederick Dennie T. , Flaherty Keith T. , Xu Xiaowei , Liu Qin , Gabrilovich Dmitry I. , Herlyn Meenhard , Blair Ian A. , Schug Zachary T. , Speicher David W. , Weeraratna Ashani T.
Published: April 2023

Aged BODIPY-C12 fibroblasts with GFP-tagged melanoma cells
Supplmentary Figures from Personalized Antibodies for Gastroesophageal Adenocarcinoma (PANGEA): A Phase II Study Evaluating an Individualized Treatment Strategy for Metastatic Disease
Authors: Catenacci Daniel V.T. , Moya Stephanie , Lomnicki Samantha , Chase Leah M. , Peterson Bryan F. , Reizine Natalie , Alpert Lindsay , Setia Namrata , Xiao Shu-Yuan , Hart John , Siddiqui Uzma D. , Hogarth D. Kyle , Eng Oliver S. , Turaga Kiran , Roggin Kevin , Posner Mitchell C. , Chang Paul , Narula Sunil , Rampurwala Murtuza , Ji Yuan , Karrison Theodore , Liao Chih-Yi , Polite Blase N. , Kindler Hedy L.
Published: April 2023

Supplmentary Figures
Supplementary Data from Tumor Mutational Burden as a Predictive Biomarker in Solid Tumors
Authors: Sha Dan , Jin Zhaohui , Budczies Jan , Kluck Klaus , Stenzinger Albrecht , Sinicrope Frank A.
Published: April 2023

Supplementary Figure 1 and Legend
Supplementary Data Table S2 from Somatic HLA Class I Loss Is a Widespread Mechanism of Immune Evasion Which Refines the Use of Tumor Mutational Burden as a Biomarker of Checkpoint Inhibitor Response
Authors: Montesion Meagan , Murugesan Karthikeyan , Jin Dexter X. , Sharaf Radwa , Sanchez Nora , Guria Ameet , Minker Max , Li Gerald , Fisher Virginia , Sokol Ethan S. , Pavlick Dean C. , Moore Jay A. , Braly Alan , Singal Gaurav , Fabrizio David , Comment Leah A. , Rizvi Naiyer A. , Alexander Brian M. , Frampton Garrett M. , Hegde Priti S. , Albacker Lee A.
Published: April 2023

Sample counts by tumor type
Supplementary Data from MAIT Cells Promote Tumor Initiation, Growth, and Metastases via Tumor MR1
Authors: Yan Juming , Allen Stacey , McDonald Elizabeth , Das Indrajit , Mak Jeffrey Y.W. , Liu Ligong , Fairlie David P. , Meehan Bronwyn S. , Chen Zhenjun , Corbett Alexandra J. , Varelias Antiopi , Smyth Mark J. , Teng Michele W.L.
Published: April 2023

Supplementary text and figures
Supplementary Data Figure S2 from Somatic HLA Class I Loss Is a Widespread Mechanism of Immune Evasion Which Refines the Use of Tumor Mutational Burden as a Biomarker of Checkpoint Inhibitor Response
Authors: Montesion Meagan , Murugesan Karthikeyan , Jin Dexter X. , Sharaf Radwa , Sanchez Nora , Guria Ameet , Minker Max , Li Gerald , Fisher Virginia , Sokol Ethan S. , Pavlick Dean C. , Moore Jay A. , Braly Alan , Singal Gaurav , Fabrizio David , Comment Leah A. , Rizvi Naiyer A. , Alexander Brian M. , Frampton Garrett M. , Hegde Priti S. , Albacker Lee A.
Published: April 2023

Somatic HLA-I LOH is associated with decreased durable clinical benefit and progression free survival in ICI-treated NSCLC
Supplementary Data from Inhibition of Nuclear Pore Complex Formation Selectively Induces Cancer Cell Death
Authors: Sakuma Stephen , Raices Marcela , Borlido Joana , Guglielmi Valeria , Zhu Ethan Y.S. , D'Angelo Maximiliano A.
Published: April 2023

Supplementary Figures and Methods
Supplementary Methods from Resistance Mechanisms to SYK Inhibition in Acute Myeloid Leukemia
Authors: Cremer Anjali , Ellegast Jana M. , Alexe Gabriela , Frank Elizabeth S. , Ross Linda , Chu S. Haihua , Pikman Yana , Robichaud Amanda , Goodale Amy , Häupl Björn , Mohr Sebastian , Rao Arati V. , Walker Alison R. , Blachly James S. , Piccioni Federica , Armstrong Scott A. , Byrd John C. , Oellerich Thomas , Stegmaier Kimberly
Published: April 2023

Computational analysis methods for RNAseq, WES, synergy analyse, Masspec information used for phosphoproteomic studies.
Supplementary Figures and Table from Pharmacologic Suppression of B7-H4 Glycosylation Restores Antitumor Immunity in Immune-Cold Breast Cancers
Authors: Song Xinxin , Zhou Zhuan , Li Hongchun , Xue Yifan , Lu Xinghua , Bahar Ivet , Kepp Oliver , Hung Mien-Chie , Kroemer Guido , Wan Yong
Published: April 2023

Supplementary Figures 1-8 Supplementary Table 1
Supplementary Appendix from Bempegaldesleukin (NKTR-214) plus Nivolumab in Patients with Advanced Solid Tumors: Phase I Dose-Escalation Study of Safety, Efficacy, and Immune Activation (PIVOT-02)
Authors: Diab Adi , Tannir Nizar M. , Bentebibel Salah-Eddine , Hwu Patrick , Papadimitrakopoulou Vassiliki , Haymaker Cara , Kluger Harriet M. , Gettinger Scott N. , Sznol Mario , Tykodi Scott S. , Curti Brendan D. , Tagliaferri Mary A. , Zalevsky Jonathan , Hannah Alison L. , Hoch Ute , Aung Sandra , Fanton Christie , Rizwan Ahsan , Iacucci Ernesto , Liao Yijie , Bernatchez Chantale , Hurwitz Michael E. , Cho Daniel C.
Published: April 2023

Consolidated supplementary appendix: tables, figures, text plus legends
Supplementary Data from Antibody to CD137 Activated by Extracellular Adenosine Triphosphate Is Tumor Selective and Broadly Effective In Vivo without Systemic Immune Activation
Authors: Kamata-Sakurai Mika , Narita Yoshinori , Hori Yuji , Nemoto Takayuki , Uchikawa Ryo , Honda Masaki , Hironiwa Naoka , Taniguchi Kenji , Shida-Kawazoe Meiri , Metsugi Shoichi , Miyazaki Taro , Wada Naoko A. , Ohte Yuki , Shimizu Shun , Mikami Hirofumi , Tachibana Tatsuhiko , Ono Natsuki , Adachi Kenji , Sakiyama Tetsushi , Matsushita Tomochika , Kadono Shojiro , Komatsu Shun-ichiro , Sakamoto Akihisa , Horikawa Sayuri , Hirako Ayano , Hamada Koki , Naoi Sotaro , Savory Nasa , Satoh Yasuko , Sato Motohiko , Noguchi Yuki , Shinozuka Junko , Kuroi Haruka , Ito Ami , Wakabayashi Tetsuya , Kamimura Masaki , Isomura Fumihisa , Tomii Yasushi , Sawada Noriaki , Kato Atsuhiko , Ueda Otoya , Nakanishi Yoshito , Endo Mika , Jishage Kou-ichi , Kawabe Yoshiki , Kitazawa Takehisa , Igawa Tomoyuki
Published: April 2023

Supplementary figures, tables, material and methods, and references
Supplementary Table 4 from Distinct Colorectal Cancer–Associated APC Mutations Dictate Response to Tankyrase Inhibition
Authors: Schatoff Emma M. , Goswami Sukanya , Zafra Maria Paz , Foronda Miguel , Shusterman Michael , Leach Benjamin I. , Katti Alyna , Diaz Bianca J. , Dow Lukas E.
Published: April 2023

Oligonucleotide sequences
Supplementary Data from Unique Neoantigens Arise from Somatic Mutations in Patients with Gastrointestinal Cancers
Authors: Parkhurst Maria R. , Robbins Paul F. , Tran Eric , Prickett Todd D. , Gartner Jared J. , Jia Li , Ivey Gabriel , Li Yong F. , El-Gamil Mona , Lalani Almin , Crystal Jessica S. , Sachs Abraham , Groh Eric , Ray Satyajit , Ngo Lien T. , Kivitz Scott , Pasetto Anna , Yossef Rami , Lowery Frank J. , Goff Stephanie L. , Lo Winifred , Cafri Gal , Deniger Drew C. , Malekzadeh Parisa , Ahmadzadeh Mojgan , Wunderlich John R. , Somerville Robert P.T. , Rosenberg Steven A.
Published: April 2023

Supplementary Table 3
Supplementary Data from Genetic Ancestry Contributes to Somatic Mutations in Lung Cancers from Admixed Latin American Populations
Authors: Carrot-Zhang Jian , Soca-Chafre Giovanny , Patterson Nick , Thorner Aaron R. , Nag Anwesha , Watson Jacqueline , Genovese Giulio , Rodriguez July , Gelbard Maya K. , Corrales-Rodriguez Luis , Mitsuishi Yoichiro , Ha Gavin , Campbell Joshua D. , Oxnard Geoffrey R. , Arrieta Oscar , Cardona Andres F. , Gusev Alexander , Meyerson Matthew
Published: April 2023

Supplementary Tables
Table S1 from Lineage Reversion Drives WNT Independence in Intestinal Cancer
Authors: Han Teng , Goswami Sukanya , Hu Yang , Tang Fanying , Zafra Maria Paz , Murphy Charles , Cao Zhen , Poirier John T. , Khurana Ekta , Elemento Olivier , Hechtman Jaclyn F. , Ganesh Karuna , Yaeger Rona , Dow Lukas E.
Published: April 2023

Summary of organoid genotypes and WNT resistance status
Supplementary Tables from Clonal Selection with RAS Pathway Activation Mediates Secondary Clinical Resistance to Selective FLT3 Inhibition in Acute Myeloid Leukemia
Authors: McMahon Christine M. , Ferng Timothy , Canaani Jonathan , Wang Eunice S. , Morrissette Jennifer J.D. , Eastburn Dennis J. , Pellegrino Maurizio , Durruthy-Durruthy Robert , Watt Christopher D. , Asthana Saurabh , Lasater Elisabeth A. , DeFilippis RosaAnna , Peretz Cheryl A.C. , McGary Lisa H.F. , Deihimi Safoora , Logan Aaron C. , Luger Selina M. , Shah Neil P. , Carroll Martin , Smith Catherine C. , Perl Alexander E.
Published: April 2023

Supplementary Tables 1-6
Supplementary Figures from Clonal Selection with RAS Pathway Activation Mediates Secondary Clinical Resistance to Selective FLT3 Inhibition in Acute Myeloid Leukemia
Authors: McMahon Christine M. , Ferng Timothy , Canaani Jonathan , Wang Eunice S. , Morrissette Jennifer J.D. , Eastburn Dennis J. , Pellegrino Maurizio , Durruthy-Durruthy Robert , Watt Christopher D. , Asthana Saurabh , Lasater Elisabeth A. , DeFilippis RosaAnna , Peretz Cheryl A.C. , McGary Lisa H.F. , Deihimi Safoora , Logan Aaron C. , Luger Selina M. , Shah Neil P. , Carroll Martin , Smith Catherine C. , Perl Alexander E.
Published: April 2023

Supplementary Figures S1-S7
Supplementary Table 3 from Mechanisms of Lymphoma Clearance Induced by High-Dose Alkylating Agents
Authors: Lossos Chen , Liu Yunpeng , Kolb Kellie E. , Christie Amanda L. , Van Scoyk Alexandria , Prakadan Sanjay M. , Shigemori Kay , Stevenson Kristen E. , Morrow Sara , Plana Olivia D. , Fraser Cameron , Jones Kristen L. , Liu Huiyun , Pallasch Christian P. , Modiste Rebecca , Nguyen Quang-De , Craig Jeffrey W. , Morgan Elizabeth A. , Vega Francisco , Aster Jon C. , Sarosiek Kristopher A. , Shalek Alex K. , Hemann Michael T. , Weinstock David M.
Published: April 2023

Supplementary Table 3
Figure S5 from RBMS1 Suppresses Colon Cancer Metastasis through Targeted Stabilization of Its mRNA Regulon
Authors: Yu Johnny , Navickas Albertas , Asgharian Hosseinali , Culbertson Bruce , Fish Lisa , Garcia Kristle , Olegario John Paolo , Dermit Maria , Dodel Martin , Hänisch Benjamin , Luo Yikai , Weinberg Ethan M. , Dienstmann Rodrigo , Warren Robert S. , Mardakheh Faraz K. , Goodarzi Hani
Published: April 2023

Supplementary Figure 5
Supplementary Figures and Methods from Mechanisms of Lymphoma Clearance Induced by High-Dose Alkylating Agents
Authors: Lossos Chen , Liu Yunpeng , Kolb Kellie E. , Christie Amanda L. , Van Scoyk Alexandria , Prakadan Sanjay M. , Shigemori Kay , Stevenson Kristen E. , Morrow Sara , Plana Olivia D. , Fraser Cameron , Jones Kristen L. , Liu Huiyun , Pallasch Christian P. , Modiste Rebecca , Nguyen Quang-De , Craig Jeffrey W. , Morgan Elizabeth A. , Vega Francisco , Aster Jon C. , Sarosiek Kristopher A. , Shalek Alex K. , Hemann Michael T. , Weinstock David M.
Published: April 2023

Supplementary Figures 1-6 and Supplementary Methods
Supplementary Tables 4-5 from Combination Olaparib and Temozolomide in Relapsed Small-Cell Lung Cancer
Authors: Farago Anna F. , Yeap Beow Y. , Stanzione Marcello , Hung Yin P. , Heist Rebecca S. , Marcoux J. Paul , Zhong Jun , Rangachari Deepa , Barbie David A. , Phat Sarah , Myers David T. , Morris Robert , Kem Marina , Dubash Taronish D. , Kennedy Elizabeth A. , Digumarthy Subba R. , Sequist Lecia V. , Hata Aaron N. , Maheswaran Shyamala , Haber Daniel A. , Lawrence Michael S. , Shaw Alice T. , Mino-Kenudson Mari , Dyson Nicholas J. , Drapkin Benjamin J.
Published: April 2023

Supplementary Tables 4-5
Supplementary Tables from Integrated Genomic Analysis Identifies Driver Genes and Cisplatin-Resistant Progenitor Phenotype in Pediatric Liver Cancer
Authors: Hirsch Theo Z. , Pilet Jill , Morcrette Guillaume , Roehrig Amélie , Monteiro Benedict J.E. , Molina Laura , Bayard Quentin , Trépo Eric , Meunier Léa , Caruso Stefano , Renault Victor , Deleuze Jean-François , Fresneau Brice , Chardot Christophe , Gonzales Emmanuel , Jacquemin Emmanuel , Guerin Florent , Fabre Monique , Aerts Isabelle , Taque Sophie , Laithier Véronique , Branchereau Sophie , Guettier Catherine , Brugières Laurence , Rebouissou Sandra , Letouzé Eric , Zucman-Rossi Jessica
Published: April 2023

All 11 supplementary tables in an excel file
Supplementary Figures from Reducing Skin Toxicities from EGFR Inhibitors with Topical BRAF Inhibitor Therapy
Authors: Lacouture Mario E. , Wainberg Zev A. , Patel Anisha B. , Anadkat Milan J. , Stemmer Salomon M. , Shacham-Shmueli Einat , Medina Egmidio , Zelinger Galit , Shelach Noa , Ribas Antoni
Published: April 2023

Figure S1 and S2
Figure S6 from Leukocyte Heterogeneity in Pancreatic Ductal Adenocarcinoma: Phenotypic and Spatial Features Associated with Clinical Outcome
Authors: Liudahl Shannon M. , Betts Courtney B. , Sivagnanam Shamilene , Morales-Oyarvide Vicente , da Silva Annacarolina , Yuan Chen , Hwang Samuel , Grossblatt-Wait Alison , Leis Kenna R. , Larson William , Lavoie Meghan B. , Robinson Padraic , Dias Costa Andressa , Väyrynen Sara A. , Clancy Thomas E. , Rubinson Douglas A. , Link Jason , Keith Dove , Horton Wesley , Tempero Margaret A. , Vonderheide Robert H. , Jaffee Elizabeth M. , Sheppard Brett , Goecks Jeremy , Sears Rosalie C. , Park Byung S. , Mori Motomi , Nowak Jonathan A. , Wolpin Brian M. , Coussens Lisa M.
Published: April 2023

Figure S6 is related to Figure 6. It shows leukocyte densities and phenotypes in treatment-naive short-term versus long-term survivors
Figure S4 from Leukocyte Heterogeneity in Pancreatic Ductal Adenocarcinoma: Phenotypic and Spatial Features Associated with Clinical Outcome
Authors: Liudahl Shannon M. , Betts Courtney B. , Sivagnanam Shamilene , Morales-Oyarvide Vicente , da Silva Annacarolina , Yuan Chen , Hwang Samuel , Grossblatt-Wait Alison , Leis Kenna R. , Larson William , Lavoie Meghan B. , Robinson Padraic , Dias Costa Andressa , Väyrynen Sara A. , Clancy Thomas E. , Rubinson Douglas A. , Link Jason , Keith Dove , Horton Wesley , Tempero Margaret A. , Vonderheide Robert H. , Jaffee Elizabeth M. , Sheppard Brett , Goecks Jeremy , Sears Rosalie C. , Park Byung S. , Mori Motomi , Nowak Jonathan A. , Wolpin Brian M. , Coussens Lisa M.
Published: April 2023

Figure S4 is related to Figure 4. It shows leukocyte composition based on tumor grade, molecular status, and histopathologic region.
Figure S1 from Leukocyte Heterogeneity in Pancreatic Ductal Adenocarcinoma: Phenotypic and Spatial Features Associated with Clinical Outcome
Authors: Liudahl Shannon M. , Betts Courtney B. , Sivagnanam Shamilene , Morales-Oyarvide Vicente , da Silva Annacarolina , Yuan Chen , Hwang Samuel , Grossblatt-Wait Alison , Leis Kenna R. , Larson William , Lavoie Meghan B. , Robinson Padraic , Dias Costa Andressa , Väyrynen Sara A. , Clancy Thomas E. , Rubinson Douglas A. , Link Jason , Keith Dove , Horton Wesley , Tempero Margaret A. , Vonderheide Robert H. , Jaffee Elizabeth M. , Sheppard Brett , Goecks Jeremy , Sears Rosalie C. , Park Byung S. , Mori Motomi , Nowak Jonathan A. , Wolpin Brian M. , Coussens Lisa M.
Published: April 2023

Figure S1 is related to Figure 1 and shows image cytometry gating strategies used in multiplex IHC analysis
Supplementary Figure S4 from Selective Modulation of a Pan-Essential Protein as a Therapeutic Strategy in Cancer
Authors: Malone Clare F. , Dharia Neekesh V. , Kugener Guillaume , Forman Alexandra B. , Rothberg Michael V. , Abdusamad Mai , Gonzalez Alfredo , Kuljanin Miljan , Robichaud Amanda L. , Conway Amy Saur , Dempster Joshua M. , Paolella Brenton R. , Dumont Nancy , Hovestadt Volker , Mancias Joseph D. , Younger Scott T. , Root David E. , Golub Todd R. , Vazquez Francisca , Stegmaier Kimberly
Published: April 2023

NXT2 expression is associated with NXT1 dependency
Table S5 from Anti-Inflammatory Drugs Remodel the Tumor Immune Environment to Enhance Immune Checkpoint Blockade Efficacy
Authors: Pelly Victoria S. , Moeini Agrin , Roelofsen Lisanne M. , Bonavita Eduardo , Bell Charlotte R. , Hutton Colin , Blanco-Gomez Adrian , Banyard Antonia , Bromley Christian P. , Flanagan Eimear , Chiang Shih-Chieh , Jørgensen Claus , Schumacher Ton N. , Thommen Daniela S. , Zelenay Santiago
Published: April 2023

Table S5
Table S3 from Anti-Inflammatory Drugs Remodel the Tumor Immune Environment to Enhance Immune Checkpoint Blockade Efficacy
Authors: Pelly Victoria S. , Moeini Agrin , Roelofsen Lisanne M. , Bonavita Eduardo , Bell Charlotte R. , Hutton Colin , Blanco-Gomez Adrian , Banyard Antonia , Bromley Christian P. , Flanagan Eimear , Chiang Shih-Chieh , Jørgensen Claus , Schumacher Ton N. , Thommen Daniela S. , Zelenay Santiago
Published: April 2023

Table S3
Table S1 from Anti-Inflammatory Drugs Remodel the Tumor Immune Environment to Enhance Immune Checkpoint Blockade Efficacy
Authors: Pelly Victoria S. , Moeini Agrin , Roelofsen Lisanne M. , Bonavita Eduardo , Bell Charlotte R. , Hutton Colin , Blanco-Gomez Adrian , Banyard Antonia , Bromley Christian P. , Flanagan Eimear , Chiang Shih-Chieh , Jørgensen Claus , Schumacher Ton N. , Thommen Daniela S. , Zelenay Santiago
Published: April 2023

Table S1
Supplementary Data from Anti-Inflammatory Drugs Remodel the Tumor Immune Environment to Enhance Immune Checkpoint Blockade Efficacy
Authors: Pelly Victoria S. , Moeini Agrin , Roelofsen Lisanne M. , Bonavita Eduardo , Bell Charlotte R. , Hutton Colin , Blanco-Gomez Adrian , Banyard Antonia , Bromley Christian P. , Flanagan Eimear , Chiang Shih-Chieh , Jørgensen Claus , Schumacher Ton N. , Thommen Daniela S. , Zelenay Santiago
Published: April 2023

Supplementary Figures and supplementary Methods
Table S9 from ZFTA–RELA Dictates Oncogenic Transcriptional Programs to Drive Aggressive Supratentorial Ependymoma
Authors: Arabzade Amir , Zhao Yanhua , Varadharajan Srinidhi , Chen Hsiao-Chi , Jessa Selin , Rivas Bryan , Stuckert Austin J. , Solis Minerva , Kardian Alisha , Tlais Dana , Golbourn Brian J. , Stanton Ann-Catherine J. , Chan Yuen San , Olson Calla , Karlin Kristen L. , Kong Kathleen , Kupp Robert , Hu Baoli , Injac Sarah G. , Ngo Madeline , Wang Peter R. , De León Luz A. , Sahm Felix , Kawauchi Daisuke , Pfister Stefan M. , Lin Charles Y. , Hodges H. Courtney , Singh Irtisha , Westbrook Thomas F. , Chintagumpala Murali M. , Blaney Susan M. , Parsons Donald W. , Pajtler Kristian W. , Agnihotri Sameer , Gilbertson Richard J. , Yi Joanna , Jabado Nada , Kleinman Claudia L. , Bertrand Kelsey C. , Deneen Benjamin , Mack Stephen C.
Published: April 2023

Summary of oligos and sgRNA sequences used in the study
Figure S5 from ZFTA–RELA Dictates Oncogenic Transcriptional Programs to Drive Aggressive Supratentorial Ependymoma
Authors: Arabzade Amir , Zhao Yanhua , Varadharajan Srinidhi , Chen Hsiao-Chi , Jessa Selin , Rivas Bryan , Stuckert Austin J. , Solis Minerva , Kardian Alisha , Tlais Dana , Golbourn Brian J. , Stanton Ann-Catherine J. , Chan Yuen San , Olson Calla , Karlin Kristen L. , Kong Kathleen , Kupp Robert , Hu Baoli , Injac Sarah G. , Ngo Madeline , Wang Peter R. , De León Luz A. , Sahm Felix , Kawauchi Daisuke , Pfister Stefan M. , Lin Charles Y. , Hodges H. Courtney , Singh Irtisha , Westbrook Thomas F. , Chintagumpala Murali M. , Blaney Susan M. , Parsons Donald W. , Pajtler Kristian W. , Agnihotri Sameer , Gilbertson Richard J. , Yi Joanna , Jabado Nada , Kleinman Claudia L. , Bertrand Kelsey C. , Deneen Benjamin , Mack Stephen C.
Published: April 2023

Figure S5 to show gene and protein expression patterns of ZRfus as well as genomic localization signatures.
Supplementary Fig S8 from Resolving the Spatial and Cellular Architecture of Lung Adenocarcinoma by Multiregion Single-Cell Sequencing
Authors: Sinjab Ansam , Han Guangchun , Treekitkarnmongkol Warapen , Hara Kieko , Brennan Patrick M. , Dang Minghao , Hao Dapeng , Wang Ruiping , Dai Enyu , Dejima Hitoshi , Zhang Jiexin , Bogatenkova Elena , Sanchez-Espiridion Beatriz , Chang Kyle , Little Danielle R. , Bazzi Samer , Tran Linh M. , Krysan Kostyantyn , Behrens Carmen , Duose Dzifa Y. , Parra Edwin R. , Raso Maria Gabriela , Solis Luisa M. , Fukuoka Junya , Zhang Jianjun , Sepesi Boris , Cascone Tina , Byers Lauren Averett , Gibbons Don L. , Chen Jichao , Moghaddam Seyed Javad , Ostrin Edwin J. , Rosen Daniel , Heymach John V. , Scheet Paul , Dubinett Steven M. , Fujimoto Junya , Wistuba Ignacio I. , Stevenson Christopher S. , Spira Avrum , Wang Linghua , Kadara Humam
Published: April 2023

Supplementary Fig S8 and legend
Table S2 from CARM1 Inhibition Enables Immunotherapy of Resistant Tumors by Dual Action on Tumor Cells and T Cells
Authors: Kumar Sushil , Zeng Zexian , Bagati Archis , Tay Rong En , Sanz Lionel A. , Hartono Stella R. , Ito Yoshinaga , Abderazzaq Fieda , Hatchi Elodie , Jiang Peng , Cartwright Adam N.R. , Olawoyin Olamide , Mathewson Nathan D. , Pyrdol Jason W. , Li Mamie Z. , Doench John G. , Booker Matthew A. , Tolstorukov Michael Y. , Elledge Stephen J. , Chédin Frédéric , Liu X. Shirley , Wucherpfennig Kai W.
Published: April 2023

RNA-seq of Carm1 KO CD8 T cells
Supplementary Table S1 from Senescence Rewires Microenvironment Sensing to Facilitate Antitumor Immunity
Authors: Chen Hsuan-An , Ho Yu-Jui , Mezzadra Riccardo , Adrover Jose M. , Smolkin Ryan , Zhu Changyu , Woess Katharina , Bernstein Nicholas , Schmitt Georgia , Fong Linda , Luan Wei , Wuest Alexandra , Tian Sha , Li Xiang , Broderick Caroline , Hendrickson Ronald C. , Egeblad Mikala , Chen Zhenghao , Alonso-Curbelo Direna , Lowe Scott W.
Published: April 2023

Differential expression analyses of CD8 T and macrophages populations of proliferating (p53 off) vs. senescent (p53 on) tumors by scRNA-seq.
Figure S4 from Discovery of Targets for Immune–Metabolic Antitumor Drugs Identifies Estrogen-Related Receptor Alpha
Authors: Sahu Avinash , Wang Xiaoman , Munson Phillip , Klomp Jan P.G. , Wang Xiaoqing , Gu Shengqing Stan , Han Ya , Qian Gege , Nicol Phillip , Zeng Zexian , Wang Chenfei , Tokheim Collin , Zhang Wubing , Fu Jingxin , Wang Jin , Nair Nishanth Ulhas , Rens Joost A.P. , Bourajjaj Meriem , Jansen Bas , Leenders Inge , Lemmers Jaap , Musters Mark , van Zanten Sanne , van Zelst Laura , Worthington Jenny , Liu Jun S. , Juric Dejan , Meyer Clifford A. , Oubrie Arthur , Liu X. Shirley , Fisher David E. , Flaherty Keith T.
Published: April 2023

ESRRA inhibition correlated with immune infiltrations and proinflammatory signaling in patient tumors.
Figure S2 from Discovery of Targets for Immune–Metabolic Antitumor Drugs Identifies Estrogen-Related Receptor Alpha
Authors: Sahu Avinash , Wang Xiaoman , Munson Phillip , Klomp Jan P.G. , Wang Xiaoqing , Gu Shengqing Stan , Han Ya , Qian Gege , Nicol Phillip , Zeng Zexian , Wang Chenfei , Tokheim Collin , Zhang Wubing , Fu Jingxin , Wang Jin , Nair Nishanth Ulhas , Rens Joost A.P. , Bourajjaj Meriem , Jansen Bas , Leenders Inge , Lemmers Jaap , Musters Mark , van Zanten Sanne , van Zelst Laura , Worthington Jenny , Liu Jun S. , Juric Dejan , Meyer Clifford A. , Oubrie Arthur , Liu X. Shirley , Fisher David E. , Flaherty Keith T.
Published: April 2023

ESRRA inhibition induces antitumor immunity in vivo.
Figure S18 from Discovery of Targets for Immune–Metabolic Antitumor Drugs Identifies Estrogen-Related Receptor Alpha
Authors: Sahu Avinash , Wang Xiaoman , Munson Phillip , Klomp Jan P.G. , Wang Xiaoqing , Gu Shengqing Stan , Han Ya , Qian Gege , Nicol Phillip , Zeng Zexian , Wang Chenfei , Tokheim Collin , Zhang Wubing , Fu Jingxin , Wang Jin , Nair Nishanth Ulhas , Rens Joost A.P. , Bourajjaj Meriem , Jansen Bas , Leenders Inge , Lemmers Jaap , Musters Mark , van Zanten Sanne , van Zelst Laura , Worthington Jenny , Liu Jun S. , Juric Dejan , Meyer Clifford A. , Oubrie Arthur , Liu X. Shirley , Fisher David E. , Flaherty Keith T.
Published: April 2023

Evaluation of BipotentR.
Tables S1, S2 and S3 from Urinary Bladder Cancer Tregs Suppress MMP2 and Potentially Regulate Invasiveness
Authors: Winerdal Malin E. , Krantz David , Hartana Ciputra A. , Zirakzadeh Ali A. , Linton Ludvig , Bergman Emma A. , Rosenblatt Robert , Vasko Janos , Alamdari Farhood , Hansson Johan , Holmström Benny , Johansson Markus , Winerdal Max , Marits Per , Sherif Amir , Winqvist Ola
Published: April 2023

Table S1 shows patient characteristics. Table S2 summarizes the antibodies used. Table S3 shows primer sequences used.
Table S2 from Protumor Steering of Cancer Inflammation by p50 NF-κB Enhances Colorectal Cancer Progression
Authors: Porta Chiara , Ippolito Alessandro , Consonni Francesca Maria , Carraro Lorenzo , Celesti Giuseppe , Correale Carmen , Grizzi Fabio , Pasqualini Fabio , Tartari Silvia , Rinaldi Maurizio , Bianchi Paolo , Balzac Fiorella , Vetrano Stefania , Turco Emilia , Hirsch Emilio , Laghi Luigi , Sica Antonio
Published: April 2023

Primers table
Table S1 from Protumor Steering of Cancer Inflammation by p50 NF-κB Enhances Colorectal Cancer Progression
Authors: Porta Chiara , Ippolito Alessandro , Consonni Francesca Maria , Carraro Lorenzo , Celesti Giuseppe , Correale Carmen , Grizzi Fabio , Pasqualini Fabio , Tartari Silvia , Rinaldi Maurizio , Bianchi Paolo , Balzac Fiorella , Vetrano Stefania , Turco Emilia , Hirsch Emilio , Laghi Luigi , Sica Antonio
Published: April 2023

CRC patients table
Supplementary Figure 2 from Intravenous Injection of MVA Virus Targets CD8+ Lymphocytes to Tumors to Control Tumor Growth upon Combinatorial Treatment with a TLR9 Agonist
Authors: Fend Laetitia , Gatard-Scheikl Tanja , Kintz Jacqueline , Gantzer Murielle , Schaedler Emmanuelle , Rittner Karola , Cochin Sandrine , Fournel Sylvie , Préville Xavier
Published: April 2023

Supplementary Figure 2. Infiltration of contralateral kidneys from tumor-bearing mice by CD45 positive cells.
Figure S6 from Antibody-Neutralized Reovirus Is Effective in Oncolytic Virotherapy
Authors: Berkeley Robert A. , Steele Lynette P. , Mulder Aat A. , van den Wollenberg Diana J.M. , Kottke Timothy J. , Thompson Jill , Coffey Matthew , Hoeben Rob C. , Vile Richard G. , Melcher Alan , Ilett Elizabeth J.
Published: April 2023

FcγRIII receptor blockade impairs reoNAb loading of monocytes
Supplemental Data from Loss of CXCR4 in Myeloid Cells Enhances Antitumor Immunity and Reduces Melanoma Growth through NK Cell and FASL Mechanisms
Authors: Yang Jinming , Kumar Amrendra , Vilgelm Anna E. , Chen Sheau-Chiann , Ayers Gregory D. , Novitskiy Sergey V. , Joyce Sebastian , Richmond Ann
Published: April 2023

Supplemental Data and Supplemental Figures