bluuebunny/crossref_metadata_2025 huggingface dataset:
Engineering multiple species-like genetic incompatibilities in insects
Authors: Maselko Maciej , Feltman Nathan , Upadhyay Ambuj , Hayward Amanda , Das Siba , Myslicki Nathan , Peterson Aidan J. , O’Connor Michael B. , Smanski Michael J.
Published: September 2020

Speciation constrains the flow of genetic information between populations of sexually reproducing organisms. Gaining control over mechanisms of speciation would enable new strategies to manage wild populations of disease vectors, agricultural pests, and invasive species. Additionally, such control would provide safe biocontainment of transgenes and gene drives. Here, we demonstrate a general approach to create engineered genetic incompatibilities (EGIs) in the model insect Drosophila melanogaster. EGI couples a dominant lethal transgene with a recessive resistance allele. Strains homozygous for both elements are fertile and fecund when they mate with similarly engineered strains, but incompatible with wild-type strains that lack resistant alleles. EGI genotypes can also be tuned to cause hybrid lethality at different developmental life-stages. Further, we demonstrate that multiple orthogonal EGI strains of D. melanogaster can be engineered to be mutually incompatible with wild-type and with each other. EGI is a simple and robust approach in multiple sexually reproducing organisms.
Persisting volcanic ash particles impact stratospheric SO2 lifetime and aerosol optical properties
Authors: Zhu Yunqian , Toon Owen B. , Jensen Eric J. , Bardeen Charles G. , Mills Michael J. , Tolbert Margaret A. , Yu Pengfei , Woods Sarah
Published: September 2020

Volcanic ash is often neglected in climate simulations because ash particles are assumed to have a short atmospheric lifetime, and to not participate in sulfur chemistry. After the Mt. Kelut eruption in 2014, stratospheric ash-rich aerosols were observed for months. Here we show that the persistence of super-micron ash is consistent with a density near 0.5 g cm−3, close to pumice. Ash-rich particles dominate the volcanic cloud optical properties for the first 60 days. We also find that the initial SO2 lifetime is determined by SO2 uptake on ash, rather than by reaction with OH as commonly assumed. About 43% more volcanic sulfur is removed from the stratosphere in 2 months with the SO2 heterogeneous chemistry on ash particles than without. This research suggests the need for re-evaluation of factors controlling SO2 lifetime in climate model simulations, and of the impact of volcanic ash on stratospheric chemistry and radiation.
Implicit pattern learning predicts individual differences in belief in God in the United States and Afghanistan
Authors: Weinberger Adam B. , Gallagher Natalie M. , Warren Zachary J. , English Gwendolyn A. , Moghaddam Fathali M. , Green Adam E.
Published: September 2020

Most humans believe in a god, but many do not. Differences in belief have profound societal impacts. Anthropological accounts implicate bottom-up perceptual processes in shaping religious belief, suggesting that individual differences in these processes may help explain variation in belief. Here, in findings replicated across socio-religiously disparate samples studied in the U.S. and Afghanistan, implicit learning of patterns/order within visuospatial sequences (IL-pat) in a strongly bottom-up paradigm predict 1) stronger belief in an intervening/ordering god, and 2) increased strength-of-belief from childhood to adulthood, controlling for explicit learning and parental belief. Consistent with research implicating IL-pat as a basis of intuition, and intuition as a basis of belief, mediation models support a hypothesized effect pathway whereby IL-pat leads to intuitions of order which, in turn, lead to belief in ordering gods. The universality and variability of human IL-pat may thus contribute to the global presence and variability of religious belief.
Author Correction: Requirements for the differentiation of innate T-bethigh memory-phenotype CD4+ T lymphocytes under steady state
Authors: Kawabe Takeshi , Yi Jaeu , Kawajiri Akihisa , Hilligan Kerry , Fang Difeng , Ishii Naoto , Yamane Hidehiro , Zhu Jinfang , Jankovic Dragana , Kim Kwang Soon , Trinchieri Giorgio , Sher Alan
Published: September 2020

An amendment to this paper has been published and can be accessed via a link at the top of the paper.
Author Correction: Boosting output performance of sliding mode triboelectric nanogenerator by charge space-accumulation effect
Authors: He Wencong , Liu Wenlin , Chen Jie , Wang Zhao , Liu Yike , Pu Xianjie , Yang Hongmei , Tang Qian , Yang Huake , Guo Hengyu , Hu Chenguo
Published: September 2020

An amendment to this paper has been published and can be accessed via a link at the top of the paper.
Electrosorption at metal surfaces from first principles
Authors: Hörmann Nicolas G. , Marzari Nicola , Reuter Karsten
Published: September 2020

Electrosorption of solvated species at metal electrodes is a most fundamental class of processes in interfacial electrochemistry. Here, we use its sensitive dependence on the electric double layer to assess the performance of ab initio thermodynamics approaches increasingly used for the first-principles description of electrocatalysis. We show analytically that computational hydrogen electrode calculations at zero net-charge can be understood as a first-order approximation to a fully grand canonical approach. Notably, higher-order terms in the applied potential caused by the charging of the double layer include contributions from adsorbate-induced changes in the work function and in the interfacial capacitance. These contributions are essential to yield prominent electrochemical phenomena such as non-Nernstian shifts of electrosorption peaks and non-integer electrosorption valencies. We illustrate this by calculating peak shifts for H on Pt electrodes and electrosorption valencies of halide ions on Ag electrodes, obtaining qualitative agreement with experimental data already when considering only second order terms. The results demonstrate the agreement between classical electrochemistry concepts and a first-principles fully grand canonical description of electrified interfaces and shed new light on the widespread computational hydrogen electrode approach.
K-EmoCon, a multimodal sensor dataset for continuous emotion recognition in naturalistic conversations
Authors: Park Cheul Young , Cha Narae , Kang Soowon , Kim Auk , Khandoker Ahsan Habib , Hadjileontiadis Leontios , Oh Alice , Jeong Yong , Lee Uichin
Published: September 2020

Recognizing emotions during social interactions has many potential applications with the popularization of low-cost mobile sensors, but a challenge remains with the lack of naturalistic affective interaction data. Most existing emotion datasets do not support studying idiosyncratic emotions arising in the wild as they were collected in constrained environments. Therefore, studying emotions in the context of social interactions requires a novel dataset, and K-EmoCon is such a multimodal dataset with comprehensive annotations of continuous emotions during naturalistic conversations. The dataset contains multimodal measurements, including audiovisual recordings, EEG, and peripheral physiological signals, acquired with off-the-shelf devices from 16 sessions of approximately 10-minute long paired debates on a social issue. Distinct from previous datasets, it includes emotion annotations from all three available perspectives: self, debate partner, and external observers. Raters annotated emotional displays at intervals of every 5 seconds while viewing the debate footage, in terms of arousal-valence and 18 additional categorical emotions. The resulting K-EmoCon is the first publicly available emotion dataset accommodating the multiperspective assessment of emotions during social interactions.
Experimental database of optical properties of organic compounds
Authors: Joung Joonyoung F. , Han Minhi , Jeong Minseok , Park Sungnam
Published: September 2020

Experimental databases on the optical properties of organic chromophores are important for the implementation of data-driven chemistry using machine learning. Herein, we present a series of experimental data including various optical properties such as the first absorption and emission maximum wavelengths and their bandwidths (full width at half maximum), extinction coefficient, photoluminescence quantum yield, and fluorescence lifetime. A database of 20,236 data points was developed by collecting the optical properties of organic compounds already reported in the literature. A dataset of 7,016 unique organic chromophores in 365 solvents or in solid state is available in CSV format.
Kinematic dataset of actors expressing emotions
Authors: Zhang Mingming , Yu Lu , Zhang Keye , Du Bixuan , Zhan Bin , Chen Shaohua , Jiang Xiuhao , Guo Shuai , Zhao Jiafeng , Wang Yang , Wang Bin , Liu Shenglan , Luo Wenbo
Published: September 2020

Human body movements can convey a variety of emotions and even create advantages in some special life situations. However, how emotion is encoded in body movements has remained unclear. One reason is that there is a lack of public human body kinematic dataset regarding the expressing of various emotions. Therefore, we aimed to produce a comprehensive dataset to assist in recognizing cues from all parts of the body that indicate six basic emotions (happiness, sadness, anger, fear, disgust, surprise) and neutral expression. The present dataset was created using a portable wireless motion capture system. Twenty-two semi-professional actors (half male) completed performances according to the standardized guidance and preferred daily events. A total of 1402 recordings at 125 Hz were collected, consisting of the position and rotation data of 72 anatomical nodes. To our knowledge, this is now the largest emotional kinematic dataset of the human body. We hope this dataset will contribute to multiple fields of research and practice, including social neuroscience, psychiatry, computer vision, and biometric and information forensics.
Access to mass rapid transit in OECD urban areas
Authors: Verbavatz Vincent , Barthelemy Marc
Published: September 2020

As mitigating car traffic in cities has become paramount to abate climate change effects, fostering public transport in cities appears ever-more appealing. A key ingredient in that purpose is easy access to mass rapid transit (MRT) systems. So far, we have however few empirical estimates of the coverage of MRT in urban areas, computed as the share of people living in MRT catchment areas, say for instance within walking distance. In this work, we clarify a universal definition of such a metrics - People Near Transit (PNT) - and present measures of this quantity for 85 urban areas in OECD countries – the largest dataset of such a quantity so far. By suggesting a standardized protocol, we make our dataset sound and expandable to other countries and cities in the world, which grounds our work into solid basis for multiple reuses in transport, environmental or economic studies.
Database of Italian present-day stress indicators, IPSI 1.4
Authors: Mariucci Maria Teresa , Montone Paola
Published: September 2020

The Italian Present-day Stress Indicators (IPSI) database is a freely available Italian georeferenced repository of information regarding the crustal stress field. It consists of horizontal stress orientations that have been analysed, compiled in a standardised format and quality-ranked for reliability and comparability on a global scale. The database contains a collection of information regarding contemporary stress within the shallow crust from the following main stress-indicator categories: borehole breakouts; earthquake focal mechanisms; seismic sequences and active fault-slip data. The present database (IPSI 1.4) released in January 2020 is accessible through a web interface which facilitates findability, accessibility, interoperability and reusability of the dataset. Moreover, it contains 928 records updated up until December 2019 with an increase of 10% with respect to the first one, and improved metadata information. The uniform spread of stress data over a given territory is relevant for earth crustal modelling or as starting point in many applied studies. It is therefore necessary to continue collecting new data and update present-day stress maps to obtain more reliable evaluations.
Topographical curvature is sufficient to control epithelium elongation
Authors: Rougerie Pablo , Pieuchot Laurent , dos Santos Rafaela Silva , Marteau Julie , Bigerelle Maxence , Chauvy Pierre-François , Farina Marcos , Anselme Karine
Published: September 2020

How biophysical cues can control tissue morphogenesis is a central question in biology and for the development of efficient tissue engineering strategies. Recent data suggest that specific topographies such as grooves and ridges can trigger anisotropic tissue growth. However, the specific contribution of biologically relevant topographical features such as cell-scale curvature is still unclear. Here we engineer a series of grooves and ridges model topographies exhibiting specific curvature at the ridge/groove junctions and monitored the growth of epithelial colonies on these surfaces. We observe a striking proportionality between the maximum convex curvature of the ridges and the elongation of the epithelium. This is accompanied by the anisotropic distribution of F-actin and nuclei with partial exclusion of both in convex regions as well as the curvature-dependent reorientation of pluricellular protrusions and mitotic spindles. This demonstrates that curvature itself is sufficient to trigger and modulate the oriented growth of epithelia through the formation of convex “topographical barriers” and establishes curvature as a powerful tuning parameter for tissue engineering and biomimetic biomaterial design.
The Sporomusa type Nfn is a novel type of electron-bifurcating transhydrogenase that links the redox pools in acetogenic bacteria
Authors: Kremp Florian , Roth Jennifer , Müller Volker
Published: September 2020

Flavin-based electron bifurcation is a long hidden mechanism of energetic coupling present mainly in anaerobic bacteria and archaea that suffer from energy limitations in their environment. Electron bifurcation saves precious cellular ATP and enables lithotrophic life of acetate-forming (acetogenic) bacteria that grow on H2 + CO2 by the only pathway that combines CO2 fixation with ATP synthesis, the Wood–Ljungdahl pathway. The energy barrier for the endergonic reduction of NADP+, an electron carrier in the Wood–Ljungdahl pathway, with NADH as reductant is overcome by an electron-bifurcating, ferredoxin-dependent transhydrogenase (Nfn) but many acetogens lack nfn genes. We have purified a ferredoxin-dependent NADH:NADP+ oxidoreductase from Sporomusa ovata, characterized the enzyme biochemically and identified the encoding genes. These studies led to the identification of a novel, Sporomusa type Nfn (Stn), built from existing modules of enzymes such as the soluble [Fe–Fe] hydrogenase, that is widespread in acetogens and other anaerobic bacteria.
Proteomics provides insights into the inhibition of Chinese hamster V79 cell proliferation in the deep underground environment
Authors: Liu Jifeng , Ma Tengfei , Gao Mingzhong , Liu Yilin , Liu Jun , Wang Shichao , Xie Yike , Wang Ling , Cheng Juan , Liu Shixi , Zou Jian , Wu Jiang , Li Weimin , Xie Heping
Published: September 2020

As resources in the shallow depths of the earth exhausted, people will spend extended periods of time in the deep underground space. However, little is known about the deep underground environment affecting the health of organisms. Hence, we established both deep underground laboratory (DUGL) and above ground laboratory (AGL) to investigate the effect of environmental factors on organisms. Six environmental parameters were monitored in the DUGL and AGL. Growth curves were recorded and tandem mass tag (TMT) proteomics analysis were performed to explore the proliferative ability and differentially abundant proteins (DAPs) in V79 cells (a cell line widely used in biological study in DUGLs) cultured in the DUGL and AGL. Parallel Reaction Monitoring was conducted to verify the TMT results. γ ray dose rate showed the most detectable difference between the two laboratories, whereby γ ray dose rate was significantly lower in the DUGL compared to the AGL. V79 cell proliferation was slower in the DUGL. Quantitative proteomics detected 980 DAPs (absolute fold change ≥ 1.2, p < 0.05) between V79 cells cultured in the DUGL and AGL. Of these, 576 proteins were up-regulated and 404 proteins were down-regulated in V79 cells cultured in the DUGL. KEGG pathway analysis revealed that seven pathways (e.g. ribosome, RNA transport and oxidative phosphorylation) were significantly enriched. These data suggest that proliferation of V79 cells was inhibited in the DUGL, likely because cells were exposed to reduced background radiation. The apparent changes in the proteome profile may have induced cellular changes that delayed proliferation but enhanced survival, rendering V79 cells adaptable to the changing environment.
Scalable High Refractive Index polystyrene-sulfur nanocomposites via in situ inverse vulcanization
Authors: Wadi Vijay S. , Jena Kishore K. , Halique Kevin , Brigita Rožič  , Cmok Luka , Tzitzios Vasileios , Alhassan Saeed M.
Published: September 2020

In this work, we demostrate the preparation of low cost High Refractive Index polystyrene-sulfur nanocomposites in one step by combining inverse vulcanization and melt extrusion method. Poly(sulfur-1,3-diisopropenylbenzene) (PS-SD) copolymer nanoparticles (5 to 10 wt%) were generated in the polystyrene matrix via in situ inverse vulcanization reaction during extrusion process. Formation of SD copolymer was confirmed by FTIR and Raman spectroscopy. SEM and TEM further confirms the presence of homogeneously dispersed SD nanoparticles in the size range of 5 nm. Thermal and mechanical properties of these nanocomposites are comparable with the pristine polystyrene. The transparent nanocomposites exhibits High Refractive Index n = 1.673 at 402.9 nm and Abbe’y number ~ 30 at 10 wt% of sulfur loading. The nanocomposites can be easily processed into mold, films and thin films by melt processing as well as solution casting techniques. Moreover, this one step preparation method is scalable and can be extend to the other polymers.
LEGO-compatible modular mapping phantom for magnetic resonance imaging
Authors: Cho Hyo-Min , Hong Cheolpyo , Lee Changwoo , Ding Huanjun , Kim Taeho , Ahn Bongyoung
Published: September 2020

Physical phantoms have been widely used for performance evaluation of magnetic resonance imaging (MRI). Although there are many kinds of physical phantoms, most MRI phantoms use fixed configurations with specific sizes that may fit one or a few different types of radio frequency (RF) coils. Therefore, it has limitations for various image quality assessments of scanning areas. In this article, we report a novel design for a truly customizable MRI phantom called the LEGO-compatible Modular Mapping (MOMA) phantom, which not only serves as a general quality assurance phantom for a wide range of RF coils, but also a flexible calibration phantom for quantitative imaging. The MOMA phantom has a modular architecture which includes individual assessment functionality of the modules and LEGO-type assembly compatibility. We demonstrated the feasibility of the MOMA phantom for quantitative evaluation of image quality using customized module assembly compatible with head, breast, spine, knee, and body coil features. This unique approach allows comprehensive image quality evaluation with wide versatility. In addition, we provide detailed MOMA phantom development and imaging characteristics of the modules.
Long-term application of fertilizer and manures affect P fractions in Mollisol
Authors: Lu Xinchun , Mahdi Al-Kaisi , Han Xiao-zeng , Chen Xu , Yan Jun , Biswas Asim , Zou Wen-xiu
Published: September 2020

Application of phosphorus (P), a major plant nutrient, as fertilizer is critical to maintain P level for crop production and yield in most cultivated soils. While, it may impact the dynamics, limited studies have examined the long-term effects of fertilization on P fractions in a soil profile in Mollisol. A long-term field experiment was conducted at the State Key Experimental Station of Agroecology of the Chinese Academy of Sciences in Hailun county, Heilongjiang Province, China. A sequential fractionation procedure was used to determine the effect of fertilizer (types) treatments including no fertilizer (CK), chemical fertilizer (NPK), chemical fertilizer plus straw (NPK + S) and pig manure (OM) on fractions of P and their distribution within 0–100 cm soil profiles. Unlike CK treatment, the long-term application of fertilizers increased the concentration and accumulation of total and available P in 0–20 and 0–40 cm soil depths than deeper soils, respectively. The phosphorus activity coefficient (PAC) ranged from 1.5 to 13.8% within 0–100 cm soil depth. The largest PAC value was observed under OM treatment at 0–40 cm soil depth and under NPK + S treatment at 40–100 cm soil depth. The Ca2-P and Ca8-P concentrations increased significantly by 0.5–7.5 times and 0.5–10.4 times, respectively in OM treatment with the largest value in 0–40 cm soil depth over CK treatment. The Al-P concentration under NPK + S and OM treatments increased throughout the soil profile. The OM treatment increased all Po concentrations in the 0–40 cm soil depth, while NPK and NPK + S treatments increased labile organic P, moderately labile organic P, and highly stable organic P in the 0–20 cm soil depth. Thus, the application of fertilizer and straw, or organic manure may enhance inorganic and organic P pool in a Mollisol in Northeast China. Thus, organic manure application in the subsoil as a potential P source and their impact should be considered in developing management practices and policies regarding nutrient management.
Osteoconductive and electroactive carbon nanofibers/hydroxyapatite nanocomposite tailored for bone tissue engineering: in vitro and in vivo studies
Authors: Samadian Hadi , Mobasheri Hamid , Azami Mahmoud , Faridi-Majidi Reza
Published: September 2020

In this study, we aimed to fabricate osteoconductive electrospun carbon nanofibers (CNFs) decorated with hydroxyapatite (HA) crystal to be used as the bone tissue engineering scaffold in the animal model. CNFs were derived from electrospun polyacrylonitrile (PAN) nanofibers via heat treatment and the carbonized nanofibers were mineralized by a biomimetic approach. The growth of HA crystals was confirmed using XRD, FTIR, and EDAX analysis techniques. The mineralization process turned the hydrophobic CNFs (WCA: 133.5° ± 0.6°) to hydrophilic CNFs/HA nanocomposite (WCA 15.3° ± 1°). The in vitro assessments revealed that the fabricated 24M-CNFs nanocomposite was biocompatible. The osteoconductive characteristics of CNFs/HA nanocomposite promoted in vivo bone formation in the rat’s femur defect site, significantly, observed by computed tomography (CT) scan images and histological evaluation. Moreover, the histomorphometric analysis showed the highest new bone formation (61.3 ± 4.2%) in the M-CNFs treated group, which was significantly higher than the negative control group (the defect without treatment) (< 0.05). To sum up, the results implied that the fabricated CNFs/HA nanocomposite could be considered as the promising bone healing material.
Combined use of transversus abdominis plane block and laryngeal mask airway during implementing ERAS programs for patients with primary liver cancer: a randomized controlled trial
Authors: Huang Hai-ming , Chen Rui-xia , Zhu Lin-mei , Zhao Wen-shuai , Ye Xi-jiu , Luo Jian-wei , Lu Fu-ding , Zhang Lei , Yang Xue-ying , Yuan Yuan , Cao Jun
Published: September 2020

The incidence and mortality of primary liver cancer are very high and resection of tumor is the most crucial treatment for it. We aimed to assess the efficacy and safety of combined use of transversus abdominis plane (TAP) block and laryngeal mask airway (LMA) during implementing Enhanced Recovery After Surgery (ERAS) programs for patients with primary liver cancer. This was a prospective, evaluator-blinded, randomized, controlled parallel-arm trial. A total of 96 patients were enrolled (48 in each group). Patients in the control group received general anesthesia with endotracheal intubation, while patients in the TAP + LMA group received general anesthesia with LMA and an ultrasound-guided subcostal TAP block. The primary end-point was postoperative time of readiness for discharge. The secondary end-points were postoperative pain intensity, time to first flatus, quality of recovery (QoR), complications and overall medical cost. Postoperative time of readiness for discharge in the TAP + LMA group [7 (5–11) days] was shorter than that of the control group [8 (5–13) days, P = 0.004]. The postoperative apioid requirement and time to first flatus was lower in the TAP + LMA group [(102.8 ± 12.4) µg, (32.7 ± 5.8) h, respectively] than the control group [(135.7 ± 20.1) µg, P = 0.000; (47.2 ± 7.6) h, P = 0.000; respectively]. The QoR scores were significantly higher in the TAP + LMA group than the control group. The total cost for treatment in the TAP + LMA group [(66,608.4 ± 6,268.4) CNY] was lower than that of the control group [(84,434.0 ± 9,436.2) CNY, P = 0.000]. There was no difference in complications between these two groups. The combined usage of a TAP block and LMA is a simple, safe anesthesia method during implementing ERAS programs for patients with primary liver cancer. It can alleviate surgical stress, accelerate recovery and reduce medical cost.
Tradeoffs between air pollution mitigation and meteorological response in India
Authors: Upadhyay Abhishek , Dey Sagnik , Chowdhury Sourangsu , Kumar Rajesh , Goyal Pramila
Published: September 2020

To curb the staggering health burden attributed to air pollution, the sustainable solution for India would be to reduce emissions in future. Here we project ambient fine particulate matter (PM2.5) exposure in India for the year 2030 under two contrasting air pollution emission pathways for two different climate scenarios based on Representative Concentration Pathways (RCP4.5 and RCP8.5). All-India average PM2.5 is expected to increase from 41.4 ± 26.5 μg m−3 in 2010 to 61.1 ± 40.8 and 58.2 ± 37.5 μg m−3 in 2030 under RCP8.5 and RCP4.5 scenarios, respectively if India follows the current legislation (baseline) emission pathway. In contrast, ambient PM2.5 in 2030 would be 40.2 ± 27.5 (for RCP8.5) and 39.2 ± 25.4 (for RCP4.5) μg m−3 following the short-lived climate pollutant (SLCP) mitigation emission pathway. We find that the lower PM2.5 in the mitigation pathway (34.2% and 32.6%, respectively for RCP8.5 and RCP4.5 relative to the baseline emission pathway) would come at a cost of 0.3–0.5 °C additional warming due to the direct impact of aerosols. The premature mortality burden attributable to ambient PM2.5 exposure is expected to rise from 2010 to 2030, but 381,790 (5–95% confidence interval, CI 275,620–514,600) deaths can be averted following the mitigation emission pathway relative to the baseline emission pathway. Therefore, we conclude that given the expected large health benefit, the mitigation emission pathway is a reasonable tradeoff for India despite the meteorological response. However, India needs to act more aggressively as the World Health Organization (WHO) annual air quality guideline (10 µg m−3) would remain far off.
Affinity of Skp to OmpC revealed by single-molecule detection
Authors: Pan Sichen , Yang Chen , Zhao Xin Sheng
Published: September 2020

Outer membrane proteins (OMPs) are essential to gram-negative bacteria, and molecular chaperones prevent the OMPs from aggregation in the periplasm during the OMPs biogenesis. Skp is one of the molecular chaperones for this purpose. Here, we combined single-molecule fluorescence resonance energy transfer and fluorescence correlation spectroscopy to study the affinity and stoichiometric ratio of Skp in its binding with OmpC at the single-molecule level. The half concentration of the Skp self-trimerization (C1/2) was measured to be (2.5 ± 0.7) × 102 nM. Under an Skp concentration far below the C1/2, OmpC could recruit Skp monomers to form OmpC·Skp3. The affinity to form the OmpC·Skp3 complex was determined to be (5.5 ± 0.4) × 102 pM with a Hill coefficient of 1.6 ± 0.2. Under the micromolar concentrations of Skp, the formation of OmpC·(Skp3)2 was confirmed, and the dissociation constant of OmpC·(Skp3)2 was determined to be 1.2 ± 0.4 μM. The precise information will help us to quantitatively depict the role of Skp in the biogenesis of OMPs.
Sensorimotor conflict tests in an immersive virtual environment reveal subclinical impairments in mild traumatic brain injury
Authors: Rao Hrishikesh M. , Talkar Tanya , Ciccarelli Gregory , Nolan Michael , O’Brien Anne , Vergara-Diaz Gloria , Sherrill Delsey , Zafonte Ross , Palmer Jeffrey S. , Quatieri Thomas F. , McKindles Ryan J. , Bonato Paolo , Lammert Adam C.
Published: September 2020

Current clinical tests lack the sensitivity needed for detecting subtle balance impairments associated with mild traumatic brain injury (mTBI). Patient-reported symptoms can be significant and have a huge impact on daily life, but impairments may remain undetected or poorly quantified using clinical measures. Our central hypothesis was that provocative sensorimotor perturbations, delivered in a highly instrumented, immersive virtual environment, would challenge sensory subsystems recruited for balance through conflicting multi-sensory evidence, and therefore reveal that not all subsystems are performing optimally. The results show that, as compared to standard clinical tests, the provocative perturbations illuminate balance impairments in subjects who have had mild traumatic brain injuries. Perturbations delivered while subjects were walking provided greater discriminability (average accuracy ≈ 0.90) than those delivered during standing (average accuracy ≈ 0.65) between mTBI subjects and healthy controls. Of the categories of features extracted to characterize balance, the lower limb accelerometry-based metrics proved to be most informative. Further, in response to perturbations, subjects with an mTBI utilized hip strategies more than ankle strategies to prevent loss of balance and also showed less variability in gait patterns. We have shown that sensorimotor conflicts illuminate otherwise-hidden balance impairments, which can be used to increase the sensitivity of current clinical procedures. This augmentation is vital in order to robustly detect the presence of balance impairments after mTBI and potentially define a phenotype of balance dysfunction that enhances risk of injury.
Stoichiometric analysis of protein complexes by cell fusion and single molecule imaging
Authors: Singh Avtar , Van Slyke Alexander L. , Sirenko Maria , Song Alexander , Kammermeier Paul J. , Zipfel Warren R.
Published: September 2020

The composition, stoichiometry and interactions of supramolecular protein complexes are a critical determinant of biological function. Several techniques have been developed to study molecular interactions and quantify subunit stoichiometry at the single molecule level. However, these typically require artificially low expression levels or detergent isolation to achieve the low fluorophore concentrations required for single molecule imaging, both of which may bias native subunit interactions. Here we present an alternative approach where protein complexes are assembled at physiological concentrations and subsequently diluted in situ for single-molecule level observations while preserving them in a near-native cellular environment. We show that coupling this dilution strategy with fluorescence correlation spectroscopy permits quantitative assessment of cytoplasmic oligomerization, while stepwise photobleaching and single molecule colocalization may be used to study the subunit stoichiometry of membrane receptors. Single protein recovery after dilution (SPReAD) is a simple and versatile means of extending the concentration range of single molecule measurements into the cellular regime while minimizing potential artifacts and perturbations of protein complex stoichiometry.
Accuracy assessment of a novel semiautomatic method evaluating bone grafts around the dental implant: an in vitro and ex vivo study
Authors: Shi Jun-Yu , Li Yuan , Zhuang Long-Fei , Zhang Xiao , Fan Ling-Feng , Lai Hong-Chang
Published: September 2020

The present study aimed to evaluate the accuracy and repeatability of morphological contour interpolation (MCI)-based semiautomatic segmentation method for volumetric measurements of bone grafts around dental implants. Three in vitro (one with a cylinder and two with a geometrically complex form) and four ex vivo models (peri-implant cylinder-shaped bone defect) were created for imitating implant placement with simultaneous guided bone regeneration (GBR) procedure. Cone beam computerized tomography (CBCT) scans of all models were obtained with the same parameters. For volumetric measurements, the actual volumes of bone grafts in models were assessed by computer-aided calculation and both manual and MCI-based methods were utilized as test methods. The accuracy of the methods was evaluated by comparing the measured value and the actual volume. The repeatability was assessed by calculating the coefficients of variation of repeated measurements. For the accuracy of three dimensional (3D) reconstructions, the computer-designed corresponding models were set as the reference and the morphological deviation of 3D surface renderings created by two methods were evaluated by comparing with reference. Besides, measurement time was recorded and a comparison between the two methods was performed. High accuracy of the MCI-based segmentation method was found with a discrepancy between the measured value and actual value never exceeding − 7.5%. The excellent repeatability was shown with coefficients of variation never exceeding 1.2%. The MCI-based method showed less measurement time than the manual method and its 3D surface rendering showed a lower deviation from the reference.
GFP fluorescence tagging alters dynamin-related protein 1 oligomerization dynamics and creates disassembly-refractory puncta to mediate mitochondrial fission
Authors: Montecinos-Franjola Felipe , Bauer Brianna L. , Mears Jason A. , Ramachandran Rajesh
Published: September 2020

Green fluorescent protein (GFP)-tagging is the prevalent strategy to monitor protein dynamics in living cells. However, the consequences of appending the bulky GFP moiety to the protein of interest are rarely investigated. Here, using a powerful combination of quantitative fluorescence spectroscopic and imaging techniques, we have examined the oligomerization dynamics of the GFP-tagged mitochondrial fission GTPase dynamin-related protein 1 (Drp1) both in vitro and in vivo. We find that GFP-tagged Drp1 exhibits impaired oligomerization equilibria in solution that corresponds to a greatly diminished cooperative GTPase activity in comparison to native Drp1.Consequently, GFP-tagged Drp1 constitutes aberrantly stable, GTP-resistant supramolecular assemblies both in vitro and in vivo, neither of which reflects a more dynamic native Drp1 oligomerization state. Indeed, GFP-tagged Drp1 is detected more frequently per unit length over mitochondria inDrp1-nullmouse embryonic fibroblasts (MEFs) compared to wild-type (wt) MEFs, indicating that the drastically reduced GTP turnover restricts oligomer disassembly from the mitochondrial surface relative to mixed oligomers comprising native and GFP-tagged Drp1. Yet, GFP-tagged Drp1 retains the capacity to mediate membrane constriction in vitro and mitochondrial division in vivo. These findings suggest that instead of robust assembly-disassembly dynamics, persistent Drp1 higher-order oligomerization over membranes is sufficient for mitochondrial fission.
Lipids of lung and lung fat emboli of the toothed whales (Odontoceti)
Authors: Arregui Marina , Glandon Hillary Lane , Bernaldo de Quirós Yara , Felipe-Jiménez Idaira , Consoli Francesco , Caballero María José , Koopman Heather N. , Fernández Antonio
Published: September 2020

Lipids are biomolecules present in all living organisms that, apart from their physiological functions, can be involved in different pathologies. One of these pathologies is fat embolism, which has been described histologically in the lung of cetaceans in association with ship strikes and with gas and fat embolic syndrome. To assess pathological lung lipid composition, previous knowledge of healthy lung tissue lipid composition is essential; however, these studies are extremely scarce in cetaceans. In the present study we aimed first, to characterize the lipids ordinarily present in the lung tissue of seven cetacean species; and second, to better understand the etiopathogenesis of fat embolism by comparing the lipid composition of lungs positive for fat emboli, and those negative for emboli in Physeter macrocephalus and Ziphius cavirostris (two species in which fat emboli have been described). Results showed that lipid content and lipid classes did not differ among species or diving profiles. In contrast, fatty acid composition was significantly different between species, with C16:0 and C18:1ω9 explaining most of the differences. This baseline knowledge of healthy lung tissue lipid composition will be extremely useful in future studies assessing lung pathologies involving lipids. Concerning fat embolism, non-significant differences could be established between lipid content, lipid classes, and fatty acid composition. However, an unidentified peak was only found in the chromatogram for the two struck whales and merits further investigation.
The control of magma crystallinity on the fluctuations in gas composition at open vent basaltic volcanoes
Authors: Woitischek Julia , Edmonds Marie , Woods Andrew W.
Published: September 2020

Basaltic open vent volcanoes are major global sources of volcanic gases. Many of these volcanoes outgas via intermittent Strombolian-type explosions separated by periods of passive degassing. The gas emitted during the explosions has high molar CO2/SO2 and SO2/HCl ratios, while during the passive degassing these ratios are lower. We present new laboratory experiments in a model volcanic conduit, which suggest that these differences in gas geochemistry are a consequence of gas migration through crystal-rich magma. We show that gas may flow along channels through the particle-laden liquid and, at a critical depth, the gas may displace an overlying crystal-rich plug en masse, producing a growing slug of gas. Owing to the friction on the walls of the conduit, this plug becomes progressively sheared and weakened until gas enriched in the least soluble volatiles breaks through, causing an explosion at the surface. When the gas slug bursts, liquid is drawn up in its wake, which exsolves the more soluble volatile components, which then vent passively at the surface until the next explosive slug-bursting event.
Reproductive and endocrinological effects of Benign Prostatic Hyperplasia and finasteride therapy in dogs
Authors: Angrimani Daniel S. R. , Brito Maíra M. , Rui Bruno R. , Nichi Marcílio , Vannucchi Camila I.
Published: September 2020

Benign prostatic hyperplasia (BPH) is one of the most important reproductive disorders in aging dogs. Therapeutic measures include orchiectomy and pharmacological treatment, leading to reduction of prostate volume and clinical signs. One of the most common drugs used in BPH treatment is finasteride, but data regarding its possible side effects are scarce. Thus, the aim of this study was to evaluate the effects of BPH and short-term (2 months) finasteride therapy on clinical, endocrinological, and reproductive parameters in dogs. Dogs were allocated into four experimental groups: Non-affected (n = 5), BPH (n = 5), Non-Affected-Finasteride (n = 5) and BPH-Finasteride (n = 5) groups. Dogs were evaluated monthly during 2 months by a complete breeding soundness examination, B-mode ultrasound and Doppler ultrasonography of the testicular artery, hormonal profile (testosterone, estrogen and dihydrotestosterone) and oxidative profile of the prostatic fluid. After 2 months, dogs were gonadectomized and testicles were subjected to histologic analysis. Finasteride treatment reduced dihydrotestosterone concentrations, without negative influence on semen quality and also reverted testicular hemodynamics changes of BPH. On the other hand, BPH was accompanied by significant changes in testosterone and estrogen concentrations and semen quality, mainly related to sperm kinetics alterations. In conclusion, BPH dogs have important hormonal and sperm alterations, however, short-term finasteride treatment (2 months) was able to reduce overall effects of BPH, thus representing a method of therapy for BPH treatment.
Understanding diaschisis models of attention dysfunction with rTMS
Authors: Garcia Javier O. , Battelli Lorella , Plow Ela , Cattaneo Zaira , Vettel Jean , Grossman Emily D.
Published: September 2020

Visual attentive tracking requires a balance of excitation and inhibition across large-scale frontoparietal cortical networks. Using methods borrowed from network science, we characterize the induced changes in network dynamics following low frequency (1 Hz) repetitive transcranial magnetic stimulation (rTMS) as an inhibitory noninvasive brain stimulation protocol delivered over the intraparietal sulcus. When participants engaged in visual tracking, we observed a highly stable network configuration of six distinct communities, each with characteristic properties in node dynamics. Stimulation to parietal cortex had no significant impact on the dynamics of the parietal community, which already exhibited increased flexibility and promiscuity relative to the other communities. The impact of rTMS, however, was apparent distal from the stimulation site in lateral prefrontal cortex. rTMS temporarily induced stronger allegiance within and between nodal motifs (increased recruitment and integration) in dorsolateral and ventrolateral prefrontal cortex, which returned to baseline levels within 15 min. These findings illustrate the distributed nature by which inhibitory rTMS perturbs network communities and is preliminary evidence for downstream cortical interactions when using noninvasive brain stimulation for behavioral augmentations.
Identification and analysis of odor-active compounds from Choerospondias axillaris (Roxb.) Burtt et Hill with different moisture content levels and lacquer treatments
Authors: Wang Qifan , Shen Jun , Zeng Bin , Wang Huiyu
Published: September 2020

The problem of indoor odors can greatly affect a room’s occupants. To identify odorants and comprehensively evaluate emissions from wooden materials, emissions and odors from Choerospondias axillaris (Roxb.) Burtt et Hill with different moisture content percentages and lacquer treatments were investigated in this study. Thermal desorption–gas chromatography–mass spectroscopy/olfactometry was used to analyze the release characteristics. In total, 11 key odor-active compounds were identified as moisture content gradually decreased, concentrating between 15 and 33 min. Total volatile organic compounds, total very volatile organic compounds, and total odor intensity decreased as moisture content decreased. In addition, 35 odor-active compounds, including aromatics, alkenes, aldehydes, esters, and alcohols, were identified in the odor control list. Polyurethane (PU), ultraviolet (UV), and waterborne coatings had a good inhibitory effect on eight odor characteristics, but some scents arose after lacquer treatment. For equilibrium moisture content, the major characteristics of Choerospondias axillaris were fragrant (9.4) and mint-like (3.0) compared with the fragrant (8.2), fruity (7.8), and pleasant (5.8) characteristics of PU coating; the flowery (5.9), fragrant (5.0), glue-like (4.3), and pineapple-like (4.3) characteristics of UV coating; and the antiseptic solution (3.6), fragrant (2.9), cigarette-like (2.8), and fruity (2.5) characteristics of waterborne coating. Based on multicomponent evaluation, a Choerospondias axillaris board with waterborne coating was suggested for use indoors.
Ecological niche modeling of the pantropical orchid Polystachya concreta (Orchidaceae) and its response to climate change
Authors: Kolanowska Marta , Rewicz Agnieszka , Baranow Przemysław
Published: September 2020

Climate is the dominant control factor on the spatial distribution of organisms on a global scale and global warming is predicted to become a major cause of species extinctions. In our study ecological niche modeling (ENM) was used to estimate the effect of projected future climate changes on the pantropical orchid Polystacha concreta as well as to reconstruct changes in the distribution of the suitable climatic niches of this species since the Last Glacial Maximum (LGM). The study revealed small differences in the niches occupied by populations of P. concreta recorded in various continents; however, these alterations will become more significant in regard to future climatic change. While losses of suitable habitats of the studied orchid will occur in the Americas and Africa, global warming will be favorable for Asian populations. Our study suggests a significant loss of niches since the LGM which indicates that the currently observed loss of habitats is not only the result of human activity but also of natural changes of the Earth’s climate. From the obtained models we identified the areas that will be the most resistant regarding the modifications caused by climate change.
Improving the thermal conductivity of epoxy composites using a combustion-synthesized aggregated β-Si3N4 filler with randomly oriented grains
Authors: Shimamura Akihiro , Hotta Yuji , Hyuga Hideki , Hotta Mikinori , Hirao Kiyoshi
Published: September 2020

Electrically insulating and thermally conductive polymer matrix composites are desirable for industry applications as they improve the reliability of high-performance electronic devices, particularly via heat dissipation in devices loaded with several electronic components. In this study, an aggregated β-Si3N4 filler with randomly oriented grains was produced via combustion synthesis to improve the thermal conductivity of epoxy composites. The thermal conductivities of the prepared composites were investigated as a function of the filler content, and the values were compared to those of composites loaded with commercial β-Si3N4 (non-aggregated). Negligible difference was observed in the thermal conductivities of both types of composites when the Si3N4 content was below 40 vol%; however, above 40 vol%, the aggregated β-Si3N4 filler-loaded composites showed higher thermal conductivities than the commercial β-Si3N4-loaded composites. The aggregated β-Si3N4 filler-loaded composites exhibited isotropic thermal conductivities with a maximum value of 4.7 W m−1 K−1 at 53 vol% filler content, which is approximately 2.4 times higher than that of the commercial β-Si3N4-loaded composites, thereby suggesting that the morphology of the aggregated filler would be more efficient than that of the commonly used non-aggregated filler in enhancing the thermal conductivity of a polymer matrix composite.