bluuebunny/crossref_metadata_2025 huggingface dataset:
How can clinicians choose between conflicting and discordant systematic reviews? A replication study of the Jadad algorithm
Authors: Lunny Carole , Thirugnanasampanthar Sai Surabi , Kanji Sal , Ferri Nicola , Pieper Dawid , Whitelaw Sera , Tasmin Sara , Nelson Harrison H. , Reid Emma K. , Zhang Jia He , Kalkat Banveer , Chi Yuan , Abdoulrezzak Reema , Zheng Di Wen , Pangka Lindy R.S. , Sooch Anmol , Kang Kevin T. , Wang Xin Ran , Safavi Parisa , Tricco Andrea C.
Published: December 2021

Introduction: The exponential growth of published SRs (SRs) presents challenges for clinicians seeking to answer clinical questions. In 1997, an algorithm was created by Jadad et al. to choose the best SR across multiple but similar SRs with conflicting results. Our study aims to replicate assessments done by authors using the Jadad algorithm to determine: (i) if we chose the same SR as the authors; and (ii) if we would reach the same results.Methods and Analysis: We searched MEDLINE, Epistemonikos, and Cochrane Database of SRs. We included any study using the Jadad algorithm. We used consensus building strategies to operationalise the algorithm and to ensure a consistent approach to interpretation.Results: We identified 21 studies that used the Jadad algorithm to choose one or more SRs. In 62% (13/21) of cases, we were unable to replicate the Jadad assessment and ultimately chose a different SR than the authors. Overall, 18 out of the 21 (86%) independent Jadad assessments agreed in direction of the findings despite 13 having chosen a different SR.Conclusions: Our results suggest that the Jadad algorithm is not reproducible between users as there are no prescriptive instructions about how to operationalise the algorithm. In the absence of a validated algorithm, we recommend that healthcare providers, policy makers, patients and researchers address conflicts between review findings by choosing the SR(s) with meta-analysis of RCTs that most closely resemble their clinical, public health, or policy question, are the most recent, comprehensive (i.e. in terms of number of included RCTs), and at the lowest risk of bias.
Rhizobium lacunae sp. nov., Isolated From a Freshwater Pond
Authors: Chen Wen-Ming , Yang Che-Chia , Young Chiu-Chung , Lin Shih-Yao , Sheu Shih-Yi
Published: December 2021

Bacterial strain designated CSW-27T was isolated from a freshwater pond in Taiwan. Cells were Gram-stain-negative, aerobic, oxidase-positive, catalase-negative, rod-shaped and motile by flagella. Strain CSW-27T grew at 20-40 oC (optimum, 30-37 oC), at pH 5-9 (optimum, pH 6-7) and in the presence of 0-4% NaCl (optimum, 0%). Phylogenetic analyses based on 16S rRNA gene sequences and an up-to-date bacterial core gene set revealed that strain CSW-27T was affiliated with species in the genus Rhizobium. Analysis of 16S rRNA gene sequences showed that strain CSW-27T had the highest similarity to Rhizobium straminoryzae CC-LY845T (98.5%) followed by Rhizobium capsici CC-SKC2T (96.9%). The average nucleotide identity, average amino acid identity and digital DNA-DNA hybridization values between strain CSW-27T and the closely related Rhizobium species were 73.4-86.5, 66.0-88.8 and 13.3-22.1%, respectively. The principal fatty acid was summed feature 8 (C18:1ω7c and/or C18:1ω6c). The main polar lipids were phosphatidylethanolamine, phosphatidylglycerol, diphosphatidylglycerol, phosphatidylmonomethylethanolamine, phosphatidyldimethylethanolamine, phosphatidylcholine, one uncharacterized aminophospholipid, three uncharacterized aminolipids and two uncharacterized lipids. The predominant polyamine was spermidine. The major isoprenoid quinone was Q-10. Genomic DNA G+C content of strain CSW-27T was 63.3%. These polyphasic taxonomic data indicited that strain CSW-27T should be considered as representing a novel species in the genus Rhizobium, for which the name Rhizobium lacunae sp. nov. is proposed with strain CSW-27T (=BCRC 81244T =LMG 31684T) as the type strain.
2450 MHz Microwave Ablation for Liver Metastases Under 3.0T Wide-bore Magnetic Resonance Guidance: a Pilot Study
Authors: Xu Kaihao , Li Zhaonan , Liu Yiming , Liu Zaoqu , Wang Chaoyan , Jiao Dechao , Han Xinwei
Published: December 2021

Purpose: To investigate the feasibility and effectiveness of 3.0T wide-bore magnetic resonance (MR)-guided microwave ablation (MA) for liver metastases (LM).Patients and methods: From October 2018 to May 2020, 39 patients with 63 LM were treated with 3.0T wide-bore MR-guided 2450 MHz MA therapy. The procedure parameters, technical success, complications, biochemical indexes changes, local tumor response, local tumor progression (LTP) and overall survival were recorded and analyzed.Results: The mean tumor maximum diameter and total procedure time were 3.0 cm and 55.2 min, respectively. Technical success was 100% but 5 cases (12.8%) with grade-1 complications. Alanine transaminase, aspartate transaminase and total bilirubin showed slight a transient increase on day 3 (P<0.05) and returned to normal by day 30 (P>0.05). The complete ablation rate for ≦ 2.5 and >2.5 cm lesions were 100 % and 92.5 %, respectively, during the median followup of 12.0 months, LTP rate was 4.8 % (3/63), and the 6-, 12- and 18-month overall survival were 100%, 92.2%, 76.4% , respectively.Conclusion: 3.0T wide-bore MR-guided MA for LM is a safe and effective approach, especially for small LM.
Phonon Localization in Boron Nitride Nanotubes: Mixing Effect of 10B Isotopes and Vacancies
Authors: Islam Md. Sherajul , Howlader Ashraful Hossain , Zheng Rongkun , Stampfl Catherine , Park Jeongwon , Hashimoto Akihiro
Published: December 2021

We explored the mixing effect of 10B isotopes and boron (B) or nitrogen (N) vacancies on the atomic vibrational properties of (10, 0) single-wall boron nitride nanotubes (BNNT). The forced oscillation technique was employed to evaluate the phonon modes for the entire range (0-100%) of 10B isotopes and atomic vacancy densities ranging from 0 to 30%. With increasing isotope densities, we noticed a blue-shift of the Raman active A1 phonon peak, whereas an increased density of mixed or independent B and N vacancies resulted in the emergence of a new low-frequency peak and the annihilation of the A1 peak in the phonon density-of-states. High-energy optical phonons were localized as a result of both 10B isotopes and the presence of mixing defects. We generated typical mode patterns for different defects to show the phonon localization processes due to the defects. We found an asymmetrical nature of the localization length with increasing 10B isotope content, which corresponds well with the isotope inherited localization length of carbon nanotubes and mono-layer graphene. The localization length falls abruptly with the increase in concentration of both atomic vacancies (B or N) and mixing defects (10B isotope and vacancies). These findings are critical for understanding heat conduction and nanoscopic vibrational investigations like tip-enhanced Raman spectra in BNNT, which can map local phonon energies.
GSK-3β Inhibitor SB216763 Resists Oxidative Stress-Induced Apoptosis in Nucleus Pulposus Cell
Authors: Zhu Kai , Guo Song , Han Guoyi , Qiang Xiancheng , Ma Mengmeng , Xu Qinglei , Zhang Fuheng , Zhang Zhijun , Ci Yandong , Li Shaopeng , Zhu Hanbing , Tang Wenjie , Tan Jun
Published: December 2021

Oxidative stress in the intervertebral disc leads to nucleus pulposus (NP) degeneration by inducing cell apoptosis. However, the molecular mechanisms underlying this process remain unclear. Increasing evidence indicates that GSK-3β is related to cell apoptosis induced by oxidative stress. In this study, we explored whether GSK-3β inhibition protects human NP cell against apoptosis under oxidative stress. Immunofluorescence staining was used to show the expression of GSK-3β in human NP cells (NPCs). Flow cytometry, mitochondrial staining and western blot were used to detect apoptosis of treated NPCs, changes of mitochondrial membrane potential and the expression of mitochondrial apoptosis-related proteins using GSK-3β specific inhibitor SB216763. Coprecipitation was used to demonstrate the interaction between GSK-3β and Bcl-2 in an GSK-3β knockdown in vitro model. We delineated the protective effect of GSK-3β specific inhibitor SB216763 on human NP cell apoptosis induced by oxidative stress in vitro. Further, we showed SB216763 exert the protective effect by preservation of the mitochondrial membrane potential and inhibition of caspase 3/7 activity during oxidative injury. The detailed mechanism underlying the antiapoptotic effect of GSK-3β inhibition was also studied by analyzing mitochondrial apoptosis pathway in vitro. We concluded that the GSK-3β inhibitor SB216763 protected mitochondrial membrane potential to delay nucleus pulposus cell apoptosis by inhibiting the interaction between GSK-3β and Bcl-2 and subsequently reducing Cyto-C release and caspase-3 activation. Together, inhibition of GSK-3β using SB216763 in NP may be a favorable therapeutic strategy to slow intervertebral disc degeneration.
Effect of Processing Parameters On Mechanical Properties of Inconel718 Superalloy Fabricated By Direct Energy Deposit
Authors: Jia Tianhao , Zou Bin , Liu Wenbo , Lei Ting , Ding Hongjian
Published: December 2021

In this study, Inconel718 specimens with good mechanical properties were prepared by direct energy deposit (DED) with different laser processing parameters. The mechanical properties of Inconel718 samples fabricated by laser direct energy deposit method without heat treatment were measured. The fractures and metallographic structures of prepared Inconel718 were observed, and the mechanism of the effect of diverse machining parameters on mechanical properties of Inconel718 was analyzed from the micro level. The results showed the microstructures of depositions of Inconel 718 specimens prepared by DED were compact with fine grains and anisotropic microstructures, where macroscopic defects were barely seen. The mechanical properties and microstructures of Inconel718 were influenced by processing parameters, among which the forming angle and laser power had the most remarkable effect. According to the experimental data, it could be observed that the Inconel718 specimens prepared by DED had the best performance under the circumstance of 1400W laser power, 1.0mm layer thickness, 600mm/min scanning speed, 1.3mm hatch spacing, and 90° forming angle, whose ultimate tensile strength (UTS) and macro hardness were 1016.10MPa and 36.2HRC respectively. The UTS of Inconel 718 manufactured by DED was close to that of Inconel718 prepared by traditional forging, and even it had higher hardness.
Synthesis and Characterization of Antibacterial Viscose Nonwoven Fabric by the Cooperative Action of Se Nanoparticles and Amino Hyperbranched Polymer
Authors: Xiao Yao , Gan Zhenzheng , Dong Erying , Yan Jiawei , Liu Wanwan , Zhang Guangyu
Published: December 2021

This research provides a new method for preparing nanoparticle-coated cellulose fabrics, which has broad application prospects in the functional fiber industry. In this work amino-terminated hyperbranched poly (HBP)-capped Selenium nanoparticles (Se NPs) were synthesized for coating viscose nonwoven fabric (VNF) via impregnation method to produce a controllable and uniform Se NPs coating on the viscose fiber surface. The prepared Se NPs and the treated VNF were characterized by the transmission electron microscope (TEM), x-ray diraction (XRD), x-ray photoelectron spectroscopy (XPS), field emission scanning electron microcopy (FE-SEM), and antibacterial measurement. The results indicate that the Se NPs were spherical shaped with an average size of 10 nm. FESEM, XRD, and XPS characterizations demonstrated that Se NPs can adsorbed and distributed uniformly on the fiber surface. Se NPs-coated VNF showed above 99.9% bacterial reduction of Staphylococcus aureus and Escherichia coli while the Se element content on VNF was about 292 mg/kg.
Associated Factors and Safety of the Rapidly Achieving First Therapeutic Target of Warfarin in hospitalized Patients: A Retrospective Cohort Study
Authors: Yang Wenjun , Ma Jun , Hu Wei , Dai Haibin , Xu Huimin
Published: December 2021

Background

Warfarin is a commonly used anticoagulant drug in clinical practice. Rapidly achieving the first therapeutic international normalized ratio (INR) of warfarin may reduce the hospital length of stay. However, little research has been carried out to evaluate the influencing factors and the safety of rapidly achieving the first therapeutic INR target of warfarin.
Aim

To investigate the associated factors and the safety of rapidly achieving the first therapeutic INR target of warfarin.
Method

A retrospective cohort study was conducted in inpatients who took warfarin from November 2018 to October 2019. Patients’ information was retrieved from medical records.
Results

487 patients were included. The mean achieving first therapeutic target time was 6.0 ± 3.2 days (median, 5.0 days). Age > 65 years, body mass index < 24 kg/m2, and initial warfarin dose ≥ 3 mg/d were independent factors associated with the rapidly achieving first INR target of warfarin therapy. The incidence of INR ≥ 4 was higher in patients achieving the first INR target rapidly than those achieving the first INR target slowly, while there were no significant differences in bleeding events between the two groups.
Conclusion

Hospitalized patients aged > 65 years, with a body mass index < 24 kg/m2, or receiving an initial warfarin dose ≥ 3mg/d were more likely to achieve the first INR target of warfarin rapidly. Closer INR monitoring and appropriate warfarin dose adjustment are recommended to improve the safety for patients achieving the first INR ≥ 1.8 within 6 days after beginning oral warfarin.
Aminolytic Depolymerisation of Polyethylene Terephthalate Wastes using Sn doped ZnO Nanoparticles
Authors: Vinitha Viswanathan , Preeyangha Mani , Anbarasu Murugan , Jeya Gopal , Bernaurdshaw Neppolian , Sivamurugan Vajiravelu
Published: December 2021

Poly(ethylene terephthalate) (PET) is one of the most consumed polymers because of its excellent thermal and mechanical properties. By increasing in PET production and since the disposal of PET waste has growing to be a major global environmental issue each year. Chemical recycling is a most successful method to achieve circular economy in the PET utilizing industries. Current research work aims to complete depolymerization of waste PET from soft drink bottles by the aminolysis method to produce bis (2-hydroxy ethylene) terephthalamide (BHETA) in the presence of Sn doped ZnO. To evaluate catalytic activity, pure and Sn2+ doped ZnO nanoparticles prepared using different Sn2+ molar ratios at 0.5, 1.0 and 2.0 mol% and calcined at 500 0C for 1h. The synthesized catalysts characterised using FT-IR, XRD, and UV-vis spectroscopy. The surface morphology and percentage doping obtained from SEM and SEM-EDS, respectively. We have observed a reduction in optical band gap and crystallite size of ZnO due to tin doping. Aminolytic depolymerization of PET waste using ethanolamine promoted by Sn doped ZnO effectively under conventional thermal method. Increase in the yield of the BHETA observed with respect to increasing doping percentage of Sn and 1-2 mol% Sn doped ZnO nanoparticles afforded over 90% of BHETA. Structure and purity of BHETA, depolymerised product characterized by FT-IR, 1HNMR, 13C NMR, and MS.
Application of Artificial Intelligence-based Dual-modality Analysis Combining Fundus Photography and Optical Coherence Tomography in Diabetic Retinopathy Screening in a Community Hospital
Authors: Liu Rui , Li Qingchen , Xu Feiping , Wang Shasha , He Jie , Cao Yiting , Shi Fei , Chen Xinjian , Chen Jili
Published: December 2021

Background To assess the feasibility and application value of artificial intelligence (AI)-based screening for diabetic retinopathy (DR) by combining fundus photos and optical coherence tomography (OCT) images in a community hospital.Methods Fundus photos and OCT images were taken for 600 diabetic patients in a community hospital. Ophthalmologists and AI identified these fundus photos according to international DR standards. OCT images were used to detect concomitant macular oedema (ME). The criteria for referral were DR grades 2-4 and/or the presence of ME. The sensitivity and specificity of AI grading were evaluated. The number of referable DR cases confirmed by ophthalmologists and AI was calculated.Results DR was detected in 81 (13.5%) participants by ophthalmologists and in 94 (15.6%) by AI, and 45 (7.5%) and 53 (8.8%) participants were diagnosed with referable DR by ophthalmologists and by AI, respectively. The sensitivity, specificity and area under the curve (AUC) of AI for detecting DR were 91.67%, 96.92% and 0.944, respectively. For detecting referable DR, the sensitivity, specificity and AUC of AI were 97.78%, 98.38% and 0.981, respectively. ME was detected from OCT images in 49 (8.2%) participants by ophthalmologists and in 57 (9.5%) by AI, and the sensitivity, specificity and AUC of AI were 91.30%, 97.46% and 0.944, respectively. When combining fundus photos and OCT images, the number of referrals identified by ophthalmologists increased from 45 to 75 and from 53 to 85 by AI.Conclusion AI-based DR screening has high sensitivity and specificity and may feasibly improve the referral rate of community DR.
Bagging Based Cross-Media Retrieval Algorithm
Authors: Xu Gongwen , Zhang Yu , Yin Mingshan , Hong Wenzhong , Zou Ran , Wang Shanshan
Published: December 2021

It is very challenging to propose a strong learning algorithm with high prediction accuracy of cross-media retrieval, while finding a weak learning algorithm which is slightly higher than that of random prediction is very easy. Inspired by this idea, we propose an imaginative Bagging based cross-media retrieval algorithm (called BCMR) in this paper. First, we utilize bootstrap sampling to carry out random sampling of the original training set. The amount of the sample abstracted by bootstrap is set to be same as the original dataset. Second, 50 bootstrap replicates are used for training 50 weak classifiers independently. We take advantage of homogenous individual classifiers and integrate eight different baseline methods in our experiments. Finally, we generate the final strong classifier from the 50 weak classifiers by the integration strategy of sample voting. We use collective wisdom to eliminate bad decisions so that the generalization ability of the integrated model could be greatly enhanced. Extensive experiments performed on three datasets show that BCMR can effectively improve the accuracy of cross-media retrieval.
Development and Feasibility of a Patient-Derived Training Simulator for Image-Guided Adaptive Brachytherapy of Locally Advanced Cervical Cancers
Authors: Tomizawa Kento , Oike Takahiro , Ando Ken , Irie Daisuke , Sakai Makoto , Shimada Hirofumi , Ohno Tatsuya
Published: December 2021

Background

Image-guided adaptive brachytherapy (IGABT) plays a pivotal role in definitive radiotherapy of cervical cancer. Although the combination of a tandem and ovoid applicator with interstitial needles (IC/IS brachytherapy) is an efficient IGABT technique for bulky irregular-shaped tumors, training opportunities for IC/IS brachytherapy remain limited. Thus, we developed a training simulator for IC/IS brachytherapy for locally advanced cervical cancer and tested its feasibility.
Methods

The training simulator combined a patient-derived soft silicone tumor phantom with an acrylic tube mimicking the vagina. The tumor phantom was modeled on a cervical cancer patient treated with IGABT at our institute between 2012–2020, through detailed inspection of their three-dimensional (3D) high-risk clinical target volume (HR-CTV) at the first brachytherapy session. A true-scale tumor phantom was created from the HR-CTV data using 3D-printing. The feasibility of the training simulator was investigated by comparing treatment plans between the following six sessions (sessions #1–#3, with a Fletcher-Suit Asian Pacific applicator; #4–#6, with a Venezia applicator): in sessions #1 and #4, an expert inserted a tandem and ovoids (T&O); in sessions #2 and #5, a resident inserted a T&O plus four needles; and in sessions #3 and #6, an expert inserted a T&O plus four needles. At each session, the highest possible dose was prescribed to the HR-CTV while keeping the D2cc of the rectum and bladder (derived from the model case) below 6 and 7.6 Gy, respectively.
Results

The training simulator was developed using the HR-CTV data of a FIGO stage IIIB tumor (68 ⋅ 49 ⋅ 45 mm) selected from one of 495 candidates. The feasibility tests with a Fletcher-Suit Asian Pacific applicator resulted in HR-CTV D90 of 4.23, 5.69, and 6.70 Gy for sessions #1, #2, and #3, respectively. With a Venezia applicator, HR-CTV D90 was 4.16, 6.20, and 6.45 Gy for sessions #4, #5, and #6, respectively.
Conclusions

The tumor phantom was a good representation that resulted in various HR-CTV D90 doses depending on the physician’s experience and applicator type. Further evaluation of the training simulator is warranted to confirm its educational value for IC/IS brachytherapy for locally advanced cervical cancer.
Distributions, Compositions, and Ecological Risk Assessment of Typical Pollutants in Surface Sediment of Xihe River, China
Authors: Ke Xin , Sun Xun , Yan Zheng
Published: December 2021

Distributions and compositions of six phthalic acid esters (PAEs), eight phenol compounds and seven heavy metals in riverbed sediments of the Xihe River in Shenyang, China. The ecological risks of these typical pollutants were investigated and evaluated based on the risk quotient (RQ) and potential ecological risk index (PERI) methods. The concentrations of total ∑6PAEs, ∑8phenols and ∑7heavy metals in sediments varied from 92.83 to 293.66 μg/g dw, 8.87 to 83.73 μg/g dw and 0.46 to 419μg/g dw. The main pollutants in Xihe River sediments are DEHP, DIBP, phenol, P-methylphenol and Cd. More than half target PAEs and phenol compounds in sediment of the Xihe River exhibited medium or high ecological risk. Cd poses a very high ecological risk to the Xihe River Basin. It is imperative to take some effective measures to reduce the pollution of those contaminants.
Diversity of Morphological Traits and Glucosinolate Composition in Backcross Progenies of Brassica Rapa L. × Eruca Vesicaria (L.) Cav. Hybrids
Authors: Kaminishi Aiko , Miyohashi Fumika , Kita Nobuhiro
Published: December 2021

Breeding at both interspecific and intergeneric levels is an effective method for expanding genetic variation of cruciferous crops; however, few commercially accepted varieties have been released because of difficulties in generating fertile progenies. We employed backcross strategy to introduce Eruca vesicaria-specific characteristics into Brassica rapa and successfully obtained four BC1F1 lines that showed a wide range of diversity of morphological traits and glucosinolate (GSL) composition. Thus, leaf shape, anthocyanin coloration, glucoraphanin content, and red petal veins were found to be inherited mainly from E. vesicaria, though most of the morphological characteristics and GSL composition were inherited from intergeneric F1 plants. Since all BC1F1 lines showed post-fertilization barriers, backcrossing with B. rapa was performed and BC2F1 progenies were successfully obtained, which showed diverse morphological characteristics and GSL composition as well as higher regeneration potential. These results suggest that widening of genetic diversity of B. rapa can be achieved through successive reciprocal backcrossing of B. rapa × E. vesicaria hybrids with B. rapa.
Change in microRNAs Expression Profile of Glioblastoma Multiforme (GBM) Cell Lines Following Treatment By Ascorbic Acid
Authors: Samadi Hamed , Sohi Alireza Naderi , Jafary Hanieh , Kouhkan Fatemeh
Published: December 2021

Whereas several clinical trials are ongoing or have been completed examining the benefits of Ascorbic acid-based therapy of cancer patients, its efficacy at GBM treatment has not been sufficiently investigated. In the present study, the influence of L-Ascorbic acid (Vitamin C, VC) on two GBM cell lines (U87 and U251) was evaluated in terms of cytotoxicity, induction of cell cycle arrest, reactive oxygen species (ROS) production, and alteration in the level of GBM related microRNAs. The half maximal inhibitory concentration (IC50) of VC was obtained by Crystal Violet assay as 2 mM and 1.8 mM for U87 cell line following 24 and 48 h treatment, respectively. These values were obtained in a similar way for U251 cell line as 3.2 mM and 2.9 mM. Propidium iodide (PI) staining of the cells revealed that ascorbic acid caused cell cycle arrest in G2/M phase in both of studied GBM cell lines. Moreover, RT-qPCR results indicated that VC-treatment of GBM cell lines causes downregulation of Bcl-2 alongside increase in BAK-1 and BAX expressions. Flowcytometry-based DCFH assay confirmed drastic increase in reactive oxygen species (ROS) within U87 and U251 cells following VC-treatment. Eventually, study on microRNAs expression profile implied significant increase in four tumor suppressor miRNAs including miR-7, miR-34a, miR-128, and miR-182 in both of U87 and U251 cell lines after treatment with ascorbic acid. Besides, the expression levels of three onco-miRs (i.e., miR-10b in both of cell lines, miR-222 in U87 and miR-93 in U251) were significantly diminished.
Projection of Hot and Cold Extremes in the Amu River Basin of Central Asia using GCMs CMIP6
Authors: Salehie Obaidullah , Ismail Tarmizi , Hamed Mohammed Magdy , Shahid Shamsuddin , Muhammad Mohd Khairul Idlan
Published: December 2021

The extreme temperature has become more frequent and intense due to global warming, particularly in dry regions, causing devastating impacts on humans and ecosystems. The transboundary Amu river basin (ARB) is the most vulnerable region in Central Asia (CA) to extreme weather linked to climate change. This study aimed to project warm and cold extremes in ARB for three Shared Socioeconomic Pathways (SSP1-2.6, SSP2-4.5, SSP3-7.0 and SSP5-8.5) and two time-horizons, 2020–2059 and 2060-2099, using daily maximum (Tmax) and minimum temperature (Tmin) simulations of global climate models (GCMs) of Coupled Model Inter-comparison Project phase six (CMIP6). Results revealed that the basin's west experiences more hot extremes and the east more cold extremes. Climate change would cause a significant increase in the annual mean of Tmax and Tmin. However, the increase in mean Tmin would be much higher (5.0ºC ) than the mean Tmax (4.6ºC ). It would cause an increase in the hot extremes and a decrease in the cold extremes in the basin. The higher increase in the hot extremes would be in the west, while the higher decrease in the cold extreme in the basin's east. The number of days above 40℃ would increase from 45 to 60 days in the basin's west and northwest compared to the historical period. The number of days below -20℃ would decrease up to 45 days in the basin's east. Overall, the decrease in cold extremes would be much faster than the increase in hot extremes.
Description of Hydrogenophaga Crocea Sp. Nov. Associated With Cyanobacterial Mat Isolated From Farmland Mud
Authors: Thorat Vipool , Tiwarekar Bhavesh , Kirdat Kiran , Chavan Saurabhee , Marakad Shital , Sathe Shivaji , Yadav Amit
Published: December 2021

A catalase and oxidase-positive strain BA0156T was isolated from a cyanobacterial mat collected from the farmland mud cultivated with sugarcane from Ahmednagar, India. The 16S rRNA gene of strain BA0156T showed the highest percent sequence similarity with Hydrogenophaga borbori LMG 30805T (98.55 %), followed by H. flava DSM 619T (98.35 %) and H. intermedia DSM 5680T (98.21 %). The strain BA0156T consisted of major fatty acids, C16:0 (25.1 %) and C17:0 cyclo (3.9 %), whereas phosphatidylethanolamine and diphosphatidylglycerol were the major polar lipids. The OrthoANI and dDDH values between strain BA0156T and its closest relative H. borbori LMG 30805T were 84.59 % and 28.3 %, respectively. The DNA G+C content of strain BA0156T was 69.42 mol %. Furthermore, the biochemical and physiological features of strain BA0156T showed a distinct pattern from their closest phylogenetic neighbours. The phenotypic, genotypic and chemotaxonomic characteristics indicated that the strain BA0156T represents a new species for which the name Hydrogenophaga crocea (type strain BA0156 T = MCC 3062T = KCTC 72452T = JCM 34507T) is proposed.
Local-Scale Thermal History Influences Metabolic Response of Marine Invertebrates To Warming
Authors: Rangel Racine E. , Sorte Cascade J.B.
Published: December 2021

As climate change continues, anticipating species’ responses to rising temperatures, requires an understanding of the relationship between metabolic rate and thermal sensitivity, which itself may vary over space and time. We measured metabolic rates of three representative marine invertebrate species (hermit crabs Pagurus hirsutiusculus, periwinkle snails Littorina sitkana, and mussels Mytilus trossulus) and evaluated the relationship between thermal sensitivity (Q10) and thermal history. We tested the hypothesis that thermal history drives thermal sensitivity and quantified how this relationship differs over time (short-term to seasonal time scales) and between species. Organisms were collected from tide pools in Sitka, Alaska where we also recorded temperatures to characterize thermal history prior to metabolic rate assays. Using respirometry, we estimated mass-specific oxygen consumption (MO2) at ambient and increased temperatures for one individual per species per tide pool across three seasons. We evaluated relationships between thermal sensitivity and pool temperatures for time periods ranging from 1 day to 3 months prior to collection. For all species, thermal sensitivity was related to thermal history for the shorter time periods (1 day to 1 week). However, the direction of the relationships and most important thermal parameters (i.e., maximum, mean, or range) differed between species and seasons. We found that on average, P. hirsutiusculus and L. sitkana were more thermally sensitive than M. trossulus. These findings show that variability in thermal history over small spatial scales influences individuals’ metabolic response to warming and may be indicative of these species’ ability to acclimate to future climate change.
Perfluoroalkyl Substances (PFASs) in the Canadian Freshwater Environment.
Authors: Lalonde Benoit A. , Garron Christine
Published: December 2021

Per- and polyfluoroalkyl substances (PFASs) are anthropogenic substances that are very stable in the receiving environment. PFASs are persistent and resistant to typical environmental degradation processes and therefore are distributed across all trophic levels and environmental compartments (soil, air, water). Since most uses of PFOS, PFOA and LC-PFCAs are banned in Canada, alternative PFASs have been in use for a number of years. Twenty-nine sites across Canada were sampled for PFASs to determine concentrations and trends. Overall, 13 PFASs were measured in 566 Canadian freshwater samples from 2013- 2020 with a range from below the detection limit of the laboratory to a maximum of 138 ng/L (for PFBS). While PFOS and PFOA concentrations are declining significantly over time, other compounds such as PFPeA and PFBA have increased significantly over 2013-2020. Overall the range of concentrations found in this study were similar to that of other Canadian and international studies. However, this study also found a higher frequency of detections of the replacement PFASs than that of the other, older, Canadian studies.
Combining Exercise, Protein Supplementation and Electric Stimulation to Mitigate Muscle Wasting and Improve Outcomes for Survivors of Critical Illness - the ExPrES Study
Authors: Verceles Avelino , Serra Monica , Davis Derik , Alon Gad , Wells Chris , Parker Elizabeth , Terrin Michael L. , Sorkin John , Bhatti Waqas , Goldberg Andrew P.
Published: December 2021

Background: The combination of neuromuscular electrical stimulation (NMES) with high protein supplementation (HPRO) to preserve muscle mass and function has not been assessed in ICU patients. We compared the effects of a multimodal intervention combining NMES and HPRO with mobility and strength rehabilitation program (NMES+HPRO+PT) to standardized ICU care (SC). Methods: Over 14 days the SC group received usual critical care and rehabilitation while the NMES+HPRO+PT received 30 minutes NMES twice daily for 10 days applied to the quadriceps and dorsiflexors bilaterally and a mean 1.3±0.4 HPRO g/kg body weight in addition to SC. Nonresponsive patients received passive exercises and once responsive were encouraged to exercise actively. Primary outcome measures were muscle volume and cross-section area (CSA) measured using CT-imaging. Secondary outcomes included nutritional status, nitrogen balance, effect on delirium, and days on mechanical ventilation (MV).Results: On day 14, the NMES+HPRO+PT group lost significantly less muscle volume of both thighs and lower legs compared to SC group. The mean combined left and right thigh CSA and volume of the NMES+HPRO+PT group was significantly larger than the SC group on day 14. The nitrogen balance of the SC group was negative throughout the study duration, while the NMES+HPRO+PT group was positive on days 5, 9, and 14. At any time during their ICU stay SC patients experienced more delirium than the PT+NMES+HPRO group (46% vs 32%, p=0.09) although not statistically significant. There were no differences between groups when comparing length of stay or days on MV. Conclusion: The combination of NMES, HPRO and PT resulted in mitigation of lower extremity muscle loss and amelioration of clinical status of patients admitted to the ICU. The value of NMES, HPRO and PT independently in the initial and ongoing care of ICU survivors beyond 14 days of admission remains to be evaluated.Trial Registration: Clinicaltrials.gov identifier: NCT3195127
Integrated cognitive and physical fitness training enhances attention abilities in older adults
Authors: Anguera Joaquin , Volponi Joshua , Simon Alexander , Gallen Courtney , Rolle Camarin , Anguera-Singla Roger , Thompson Christian , Gazzaley Adam
Published: December 2021

Preserving attention abilities is of great concern to older adults who are motivated to maintain their quality of life as they age. Both cognitive and physical fitness interventions have been utilized in intervention studies to assess maintenance and enhancement of attention abilities in seniors, and a coupling of these approaches is a compelling strategy to buttress both cognitive and physical health in a time- and resource-effective manner. With this perspective, we created a closed-loop, motion-capture video game (Body-Brain Trainer: BBT) that adapts a player’s cognitive and physical demands in an integrated approach, thus creating a personalized and cohesive experience across both domains. Older adults who engaged in two months of BBT improved on both physical fitness and attention outcome measures beyond that of an expectancy-matched, active, placebo control group, with maintenance of improved attention performance evidenced 1 year later. Following training, the BBT group’s improvement on the attention outcome measure exceeded performance levels attained by an untrained group of 20-year-olds, and showed age-equilibration of a neural signature of attention shown to decline with age: midline frontal theta power. These findings highlight the potential benefits of an integrated, cognitive-physical, closed-loop training platform as a powerful tool for both cognitive and physical enhancement in older adults.
Differential Expression of DSCAM Guides the Patterning of Retinal Axons Along Their Path and at Their Target in the Developing Xenopus Visual System
Authors: Santos Rommel Andrew , Rio Rodrigo Del , Alvarez Alexander Delfin , Romero Gabriela , Vo Brandon Zarate , Cohen-Cory Susana
Published: December 2021

Background The Xenopus retinotectal circuit is organized topographically, where the dorsal-ventral axis of the retina maps respectively on to the ventral-dorsal axis of the tectum; axons from the nasal-temporal axis of the retina project respectively to the caudal-rostral axis of the tectum. Studies throughout the last two decades have shown that mechanisms involving molecular recognition of proper termination domains are at work guiding topographic organization. Such studies have shown that graded distribution of molecular cues is important for topographic mapping. However, the molecular cues organizing topography along the developing optic nerve, and as retinal axons cross the chiasm and navigate towards their target in the tectum, remain unknown. Down syndrome cell adhesion molecule (DSCAM) has been characterized as a key molecule in axon guidance, making it a strong candidate involved in the topographic organization of retinal fibers along the optic path.Methods Using a combination of whole-brain clearing and immunohistochemistry staining techniques we characterized DSCAM expression and the projection of ventral and dorsal retinal fibers starting from the eye, followed to the optic nerve into the chiasm, and into the terminal target in the optic tectum in Xenopus laevis tadpoles. We also assessed the effects of DSCAM on the establishment of retinotopic maps through spatially and temporally targeted DSCAM knockdown on retinal ganglion cells (RGCs) with axons innervating the optic tectum. Results Highest expression of DSCAM was localized to the ventral posterior region of the optic nerve and chiasm; this expression pattern coincides with ventral fibers derived from ventral RGCs. Downregulating DSCAM levels affected the segregation and proper sorting of medial axon fibers, derived from ventral RGCs, within the tectal neuropil, indicating that DSCAM plays a role in retinotopic organization. ConclusionThese findings together with the observation that DSCAM immunoreactivity accumulates on the primary dendrites of tectal neurons indicates that DSCAM exerts multiple roles in coordinating retinotopic order and connectivity in the developing vertebrate visual system.
Dynamic changes of serotonin levels induces depression-like behaviour in mice with high-fat diet
Authors: Chen Yan , Chen Lifang , Gong Tingting , Liu Haotian , Wang Shengfeng , Fang Yunxia , Zhang Yongyong , shan Weiguang
Published: December 2021

Introduction of SSRI as the first-line pharmacotherapy options for depression, which purpose is to increase the concentrations of 5-HT in brain and help reduce depressive symptoms. However, there are still many limitations to the effectiveness of these treatment strategies, 30-40% of patients do not respond to treatment at all, and even suicide occurs. In the present study, we revealed that increasing brain 5-HT concentration is not the best treatment options. When we injected sufficient amounts of 5-HT into the lateral ventricular region of mice, it actually caused depression-like behavior in the animals. The second study on high-fat fed induces depressive symptoms in mice demonstrated that 5-HT concentration in brain showed a tendency to increase first and then decrease. Both experiments indicated that if SSRI are administrated to the patient in the acute phases of depression, it may lead to exacerbation of mental disorders or suicidal tendencies.
Permeable Asphalt Hydraulic Conductivity and Particulate Matter Separation With XRT
Authors: Marchioni Mariana , Fedele Roberto , Raimondi Anita , Sansalone John , Becciu Gianfranco
Published: December 2021

Permeable asphalt (PA) is a composite material with an open graded mix design that provides a pore structure facilitating stormwater infiltration. PA is often used as a wearing course for permeable pavements and on roadways to reduce aquaplaning and noise pollution. The pore structure functions as a filter promoting particulate matter (PM) separation. The infiltrating flow characteristics are predominately dependent on pore diameter and pore interconnectivity. X-Ray microTomography (XRT) has been successfully used to estimate these parameters that are otherwise difficult to obtain through conventional gravimetric methods. The pore structure parameters allow modeling of hydraulic conductivity (k) and filtration mechanisms; required to examine the material behavior for infiltration and PM separation. Pore structure parameters were determined through XTR for three PA mixtures. The Kozeny-Kovàv model was implemented to estimate k. PM separation was tested using a pore-to-PM diameter categorical model. This filtration mechanism model was validated with data using rainfall simulation. The filtration model provided a good correlation between measured and modeled data. The identification of filtration mechanisms and k facilitate the design and evaluation of permeable pavement systems as a best management practice (BMP) for runoff volume and flow as well as PM and PM-partitioned chemical separation.
Distribution characteristics, source identification, and risk assessment of heavy metals in surface sediments of the salt lakes in the Ordos Plateau, China
Authors: Zhang Shengyin , Zhang Shuncun , Chen Yongxin , Chen Bo , Lei Tianzhu
Published: December 2021

Salt lakes have a significant effect on the regional climate, environment, and ecology in semi-arid regions characterized by lower rainfall and high evaporation. However, under the stresses of global change and human disturbance, anthropogenic pollution is the main factor threatening the lake ecological environment. Surface sediment samples collected from four salt lakes in the Ordos Plateau were used to investigate the salinity, concentration, pollution status, potential sources of heavy metals, and influencing factors. The surface sediments of Beida Pond and Gouchi Pond were weakly alkaline (pH < 9) owing to Na2SO4, whereas those of Chaigannaoer and Hongjiannao were strongly alkaline (pH > 9) owing to Na2CO3. The concentration range of Cr, Ni, Cu, Zn, As, Cd, and Pb in the sediment samples collected from the salt lake in the Ordos followed the order of Cr > Zn > Ni > Pb > Cu > As > Cd. The Cr values were higher in Chagannaoer and Hongjiannao, but the Ni, Cu, and Zn values were higher in Beida Pond and Gouchi Pond. The geoaccumulation index (Igeo) and enrichment factor (EF) consistently indicated that Cr posed the greatest potential ecological risk and that Ni, Cu, and Zn pollution was more severe in Beida Pond and Gouchi Pond than in Chagannaoer or Hongjiannao. However, Er and RI indicated these heavy metals were a low risk to the environment. Risk assessment code (RAC) revealed that Pb and Cr exhibited no mobility and had low potential bioavailability risk, although Zn, Ni, and As were categorized as medium risk. Cu had the highest mobility and high risk. Principal component analysis for Beida Pond and Gouchi Pond revealed that the source of Ni, Cu, Zn, Cd, and Pb might be associated with water - soluble elements in aqueous migration, and the source of Cr, Pb, and As might be lithospheric minerals carried by dust storms. Ni, Cu, Zn, Cd, Cr, and Pb in Chagannaoer and Hongjiannao may be derived from surface runoff, and chemicals from these sources may eventually accumulate in sediments. Pearson’s correlation analysis indicated that pH was the main environmental factor controlling the distribution of heavy metals in Chagannaoer and Hongjiannao.
Evaluating the Growth-promoting Effects of Microbial Biostimulants on Greenhouse Floriculture Crops
Authors: Lin Yiyun , Jones Michelle L.
Published: December 2021

Microbial biostimulants can promote ornamental plant growth during production and improve crop performance under abiotic stresses. Even though biostimulants have shown potential in many agricultural applications, the effectiveness and specificity of many products are not well understood. The objective of this study was to analyze the growth-promoting effects of microbial biostimulants during the greenhouse production of floriculture crops. We evaluated 13 biostimulant products in greenhouse-grown zinnia (Zinnia elegans ‘Magellan Ivory’) and petunia (Petunia ×hybrida ‘Carpet White’) at low fertility (one-third of the optimal fertilizer concentration). Biostimulant products 1 and 2 containing multiple species of beneficial bacteria and fungi, and product 10 containing Bacillus subtilis QST 713, were found to increase various aspects of plant growth, including the growth index, leaf chlorophyll content (SPAD index), and shoot biomass. Both flower biomass and numbers were greater in petunia treated with product 1, and leaf size increased in zinnia treated with products 1, 2, and 10. Plants treated with these effective biostimulants at low fertility had similar or better growth and quality than untreated plants grown under optimal fertility. The concentration of various nutrient elements in leaves was higher in zinnia plants treated with biostimulant products 1, 2, or 10 compared with the negative control. Some putative mechanisms for biostimulant effectiveness, the possible reasons for biostimulant ineffectiveness, and the potential for using biostimulants as a sustainable cultural strategy are discussed. This study provides useful information about microbial biostimulant effectiveness, which is important for the development and utilization of biostimulants in the greenhouse production of floriculture plants.
Response of Plant Growth and Development, and Accumulation of Hydroxyl-cinnamoyl Acid Derivatives to Selected Shade Nets and Seasonality of Field-grown Bush Tea (Athrixia phylicoides DC.)
Authors: Ramphinwa Maanea L. , Mchau Godwin R.A. , Madala Ntakadzeni E. , Nengovhela Ndamulelo , Ogola John B.O. , Mudau Fhatuwani N.
Published: December 2021

Horticultural practices and quality of bush tea (Athrixia phylicoides DC.) are critical for herbal tea industrialization. The objective of the current study was to determine the effect of selected shade nets and seasonal variation on plant growth and development, and hydroxycinnamic acid content of field-grown bush tea. The trial was laid out in a randomized complete block design consisting of three shade nets (black, green, and white) and control or full sunlight with three different light intensities (40%, 50%, and 80%) replicated three times. Proportion of intercepted radiation by the canopy, chlorophyll content, plant height, and fresh and dry mass were measured, and hydroxycinnamic acid accumulation was determined. In addition, hydroxycinnamic acid composition was determined using liquid chromatography linked to mass spectrometry (LC-MS). The application of shade nets resulted in plant growth and yield reduction as compared with the plants exposed to full sunlight during summer followed by white shade net. The accumulation of hydroxycinnamic acid was higher in 80% white shade net plots compared with unshaded plants (control) and the other shade nets. Therefore, lack of shading provides a conducive environment to enhance plant growth and development of bush tea. The white shade net (80%) was an effective microclimate tool to enhance accumulation of caffeoylquinic acid (m/z 353), p-coumaric acids (m/z 337), dicaffeoylquinic acid (m/z 515), and tricaffeoylquinic acids of bush tea. This study is the first to demonstrate light as a determining factor for production of chlorogenates in bush tea plants. Future studies will be conducted to determine the effect of light on extracts of the bush tea using different solvents.