bluuebunny/crossref_metadata_2025 huggingface dataset:
Investigating variations of precipitation concentration in the transitional zone between Qinling Mountains and Loess Plateau in China: Implications for regional impacts of AO and WPSH
Authors: Li Ci , Zhang Hongbo , Singh Vijay P. , Fan Jingjing , Wei Xiaowei , Yang Jiantao , Wei Xingchen
Published: November 2020

Changes in precipitation patterns greatly impact regional drought/flood risk management and utilization of water resources. The main purpose of this paper was to investigate spatio-temporal variability of precipitation concentration in the transitional zone between Qinling Mountains (QDM), Guanzhong Plain (GZP) and the Loess Plateau (LPNS) in China, using monthly-scale precipitation concentration index (PCI) and daily-scale concentration index (CI) from daily rainfall records. The Mann-Kendall method was employed to illustrate the change in trend of PCI and CI, the Kriging interpolation method was adopted to measure spatial distribution, and the Wavelet transforms were used to explore their spatio-temporal correlation with the Arctic Oscillation (AO) & Western Pacific Subtropical High (WPSH) for revealing the potential attribution of precipitation concentration variation. Also, the regional implication of CI was investigated in the zone to provide local knowledge of the index application. Results showed that annual precipitation demonstrated a north-south increasing layered spatial distribution in the zone, representing a generally decreasing trend. The CI change generally exhibited a more significant decreasing trend than did PCI in LPNS and GZP due to AO slowly increasing over time, with a spatially weak layered or radial north-south decay, and an insignificant increasing trend in QDM impacted by the enhancing WPSH, with an obvious layered or radial spatial distribution. The spatiotemporal pattern of PCI variation represented similar characteristics in attribution with CI, but an inverse spatial distribution due to the phase difference (positive and negative effects) of AO and WPSH influencing seasonal precipitation. Regional analysis of CI showed that the CI value with over 0.62 indicated that approximately 80% of precipitation was contributed by 25% of the rainiest days in this zone. Fortunately, the area with this high CI has been getting smaller, implying a positive trend toward regional flash flood and debris flow control.
Application of geopolymers synthesized from incinerated municipal solid waste ashes for the removal of cationic dye from water
Authors: Al-Ghouti Mohammad A. , Khan Mariam , Nasser Mustafa S. , Al Saad Khalid , Ee Heng OON
Published: November 2020

In this study, municipal solid waste bottom ash (MSW-BA) and fly ash (MSW-FA) were used as a source of aluminosilicate to prepare geopolymer (GEO) adsorbents (GEO-MSWBA and GEO-MSWFA) for the removal of methylene blue (MB) from water. The effects of temperature, pH, and initial concentration on the MB adsorption onto GEO-MSWBA and GEO-MSWFA were evaluated. The adsorption isotherms parameters and thermodynamics were also determined. Detailed physical and chemical characterizations of the prepared adsorbents were carried out to further understand their impact on MB adsorption. The results from the scanning electron microscopy revealed a uniform granule-sphere like structure on both prepared geopolymers, which would facilitate the MB adsorption onto the adsorbents. The X-ray diffraction allowed observation of the microstructural transformations that occur after the alkaline activation. The surface areas of the GEO-MSWBA and the GEO-MSWFA were recorded as 32.78 m2/g and 4.5 m2/g, respectively. From the Fourier transform infrared, a stretching vibration of the aluminosilicate tetrahedral was observed, which indicated the success of geopolymerization. The prepared geopolymers showed a high capability of MB adsorption from an aqueous solution. The adsorption process was best suited and explained using the Langmuir isotherm model with a maximum adsorption capacity of 666.7 mg/g for the GEO-MSWBA (at 25°C) and 769.2 mg/g for the GEO-MSWFA (at 35°C). The positive value of the enthalpy (ΔHo) for the GEO-MSWBA suggested the reaction favored endothermic reaction while the negative value of entropy (ΔSo) indicated a solid/liquid random interaction. On the other hand, the negative ΔHo value for the GEO-MSWFA indicated the reaction followed an exothermic reaction causing energy to be released, the positive ΔSo value indicated a good affinity at the solid-liquid surface. The overall negative value for Gibbs free energy (ΔGo) for both adsorbents suggested the adsorption was spontaneous and feasible. It was also inferred that n- π interaction, direct and indirect hydrogen bond, and electrostatic interaction between the MB and the prepared geopolymers facilitated the adsorption process. The current study shows that the GEO-MSWBA and the GEO-MSWFA have a great potential of removing MB as a cationic dye from water without performing any sort of laborious pretreatments.
Decision-making approaches used by UK and international health funding organisations for allocating research funds: A survey of current practice
Authors: Meadmore Katie , Fackrell Kathryn , Recio-Saucedo Alejandra , Bull Abby , Fraser Simon D. S. , Blatch-Jones Amanda
Published: November 2020

Innovations in decision-making practice for allocation of funds in health research are emerging; however, it is not clear to what extent these are used. This study aims to better understand current decision-making practices for the allocation of research funding from the perspective of UK and international health funders. An online survey (active March-April 2019) was distributed by email to UK and international health and health-related funding organisations (e.g., biomedical and social), and was publicised on social media. The survey collected information about decision-making approaches for research funding allocation, and covered assessment criteria, current and past practices, and considerations for improvements or future practice. A mixed methods analysis provided descriptive statistics (frequencies and percentages of responses) and an inductive thematic framework of key experiences. Thirty-one responses were analysed, representing government-funded organisations and charities in the health sector from the UK, Europe and Australia. Four themes were extracted and provided a narrative framework. 1. The most reported decision-making approaches were external peer review, triage, and face-to-face committee meetings; 2. Key values underpinned decision-making processes. These included transparency and gaining perspectives from reviewers with different expertise (e.g., scientific, patient and public); 3. Cross-cutting challenges of the decision-making processes faced by funders included bias, burden and external limitations; 4. Evidence of variations and innovations from the most reported decision-making approaches, including proportionate peer review, number of decision-points, virtual committee meetings and sandpits (interactive workshop). Broadly similar decision-making processes were used by all funders in this survey. Findings indicated a preference for funders to adapt current decision-making processes rather than using more innovative approaches: however, there is a need for more flexibility in decision-making and support to applicants. Funders indicated the need for information and empirical evidence on innovations which would help to inform decision-making in research fund allocation.
Motion magnification analysis of microscopy videos of biological cells
Authors: Shabi Oren , Natan Sari , Kolel Avraham , Mukherjee Abhishek , Tchaicheeyan Oren , Wolfenson Haguy , Kiryati Nahum , Lesman Ayelet
Published: November 2020

It is well recognized that isolated cardiac muscle cells beat in a periodic manner. Recently, evidence indicates that other, non-muscle cells, also perform periodic motions that are either imperceptible under conventional lab microscope lens or practically not easily amenable for analysis of oscillation amplitude, frequency, phase of movement and its direction. Here, we create a real-time video analysis tool to visually magnify and explore sub-micron rhythmic movements performed by biological cells and the induced movements in their surroundings. Using this tool, we suggest that fibroblast cells perform small fluctuating movements with a dominant frequency that is dependent on their surrounding substrate and its stiffness.
Short-term impact of sediment addition on plants and invertebrates in a southern California salt marsh
Authors: McAtee Kaelin J. , Thorne Karen M. , Whitcraft Christine R.
Published: November 2020

The implementation and monitoring of management strategies is integral to protect coastal marshes from increased inundation and submergence under sea-level rise. Sediment addition is one such strategy in which sediment is added to marshes to raise relative elevations, decrease tidal inundation, and enhance ecosystem processes. This study looked at the plant and invertebrate community responses over 12 months following a sediment addition project on a salt marsh located in an urbanized estuary in southern California, USA. This salt marsh is experiencing local subsidence, is sediment-limited from landscape modifications, has resident protected species, and is at-risk of submergence from sea-level rise. Abiotic measurements, invertebrate cores, and plant parameters were analyzed before and after sediment application in a before-after-control-impact (BACI) design. Immediately following the sediment application, plant cover and invertebrate abundance decreased significantly, with smothering of existing vegetation communities without regrowth, presumably creating resulting harsh abiotic conditions. At six months after the sediment application treatment, Salicornia bigelovii minimally colonized the sediment application area, and Spartina foliosa spread vegetatively from the edges of the marsh; however, at 12 months following sediment application overall plant recovery was still minimal. Community composition of infaunal invertebrates shifted from a dominance of marsh-associated groups like oligochaetes and polychaetes to more terrestrial and more mobile dispersers like insect larvae. In contrast to other studies, such as those with high organic deposition, that showed vegetation and invertebrate community recovery within one year of sediment application, our results indicated a much slower recovery following a sediment addition of 32 cm which resulted in a supratidal elevation with an average of 1.62 m (NAVD88) at our sampling locations. Our results indicate that the site did not recover after one year and that recovery may take longer which illustrates the importance of long-term monitoring to fully understand restoration trajectories and inform adaptive management. Testing and monitoring sea-level rise adaptation strategies like sediment addition for salt marshes is important to prevent the loss of important coastal ecosystems.
The role of explicit memory in syntactic persistence: Effects of lexical cueing and load on sentence memory and sentence production
Authors: Zhang Chi , Bernolet Sarah , Hartsuiker Robert J.
Published: November 2020

Speakers’ memory of sentence structure can persist and modulate the syntactic choices of subsequent utterances (i.e., structural priming). Much research on structural priming posited a multifactorial account by which an implicit learning process and a process related to explicit memory jointly contribute to the priming effect. Here, we tested two predictions from that account: (1) that lexical repetition facilitates the retrieval of sentence structures from memory; (2) that priming is partly driven by a short-term explicit memory mechanism with limited resources. In two pairs of structural priming and sentence structure memory experiments, we examined the effects of structural priming and its modulation by lexical repetition as a function of cognitive load in native Dutch speakers. Cognitive load was manipulated by interspersing the prime and target trials with easy or difficult mathematical problems. Lexical repetition boosted both structural priming (Experiments 1a–2a) and memory for sentence structure (Experiments 1b–2b) and did so with a comparable magnitude. In Experiment 1, there were no load effects, but in Experiment 2, with a stronger manipulation of load, both the priming and memory effects were reduced with a larger cognitive load. The findings support an explicit memory mechanism in structural priming that is cue-dependent and attention-demanding, consistent with a multifactorial account of structural priming.
Dichloroacetate-induced metabolic reprogramming improves lifespan in a Drosophila model of surviving sepsis
Authors: Bakalov Veli , Reyes-Uribe Laura , Deshpande Rahul , Maloy Abigail L. , Shapiro Steven D. , Angus Derek C. , Chang Chung-Chou H. , Le Moyec Laurence , Wendell Stacy Gelhaus , Kaynar Ata Murat
Published: November 2020

Sepsis is the leading cause of death in hospitalized patients and beyond the hospital stay and these long-term sequelae are due in part to unresolved inflammation. Metabolic shift from oxidative phosphorylation to aerobic glycolysis links metabolism to inflammation and such a shift is commonly observed in sepsis under normoxic conditions. By shifting the metabolic state from aerobic glycolysis to oxidative phosphorylation, we hypothesized it would reverse unresolved inflammation and subsequently improve outcome. We propose a shift from aerobic glycolysis to oxidative phosphorylation as a sepsis therapy by targeting the pathways involved in the conversion of pyruvate into acetyl-CoA via pyruvate dehydrogenase (PDH). Chemical manipulation of PDH using dichloroacetic acid (DCA) will promote oxidative phosphorylation over glycolysis and decrease inflammation. We tested our hypothesis in aDrosophila melanogastermodel of surviving sepsis infected with Staphylococcus aureus. Drosophila were divided into 3 groups:unmanipulated,shamandsepsis survivors, all treated with linezolid; each group was either treated or not with DCA for one week following sepsis. We followed lifespan, measured gene expression ofToll,defensin,cecropin A, anddrosomycin, and levels of lactate, pyruvate, acetyl-CoA as well as TCA metabolites. In our model, metabolic effects of sepsis are modified by DCA with normalized lactate, TCA metabolites, and was associated with improved lifespan of sepsis survivors, yet had no lifespan effects on unmanipulated and sham flies. WhileDrosomycinandcecropin Aexpression increased in sepsis survivors, DCA treatment decreased bothandselectively increaseddefensin.
Status of the WHO recommended timing and frequency of antenatal care visits in Northern Bangladesh
Authors: Sarker Bidhan Krishna , Rahman Musfikur , Rahman Tanjina , Rahman Tawhidur , Khalil Jubaida Jahan , Hasan Mehedi , Rahman Fariya , Ahmed Anisuddin , Mitra Dipak Kumar , Mridha Malay Kanti , Rahman Anisur
Published: November 2020

Objective

There is dearth of information on the timeliness of antenatal care (ANC) uptake. This study aimed to determine the timely ANC uptake by a medically trained provider (MTP) as per the World Health Organization (WHO) recommendations and the country guideline.

Methods

Cross-sectional survey was done with 2,731 women having livebirth outcome in last one year in Dinajpur, Nilphamari and Rajshahi districts, Bangladesh from August-November,2016.

Results

About 82%(2,232) women received at least one ANC from a MTP. Overall, 78%(2,142) women received 4 or more ANCs by any provider and 43%(1168) from a MTP. Only 14%(378) women received their first ANC at the 1st trimester by a MTP. As per 4 schedule visits by the WHO FANC model and the country guideline 8%(203) and 20%(543) women respectively received the first 2 timely ANC by a MTP; where only 1%(32) and 3%(72) received the first 3 visits timely and 0.6%(17) and 1%(29) received all the four timely visits. Factors significantly associated with the first two timely visits are: 10 or above years of schooling of women [adj. OR 2.13 (CI: 1.05, 4.30)] and their husbands [adj. OR 2.40 (CI: 1.31, 4.38)], women’s employment [adj. OR 2.32 (CI: 1.43, 3.76)], urban residential status [adj. OR 3.49 (CI: 2.46, 4.95)] and exposure to mass media [adj. OR 1.58 (CI: 1.07, 2.34)] at 95% confidence interval. According to the 2016 WHO ANC model, only 1.5%(40) women could comply with the first two ANC contacts timely by a MTP and no one could comply with all the timely 8 contacts.

Conclusion

Despite high coverage of ANC utilization, timely ANC visit is low as per both the WHO recommendations and the country guideline. For better understanding, further studies on the timeliness of ANC coverage are required to design feasible intervention for improving maternal and child health.
Spatio-temporal variations in bacterial and fungal community associated with dust aerosol in Kuwait
Authors: Al Salameen Fadila , Habibi Nazima , Uddin Saif , Al Mataqi Khalil , Kumar Vinod , Al Doaij Bashayer , Al Amad Sami , Al Ali Ebtisam , Shirshikhar Faiz
Published: November 2020

Kuwait is a country with a very high dust loading; in fact it bears the world’s highest particulate matter concentration in the outdoor air. The airborne dust often has associated biological materials, including pathogenic microbes that pose a serious risk to the urban ecosystem and public health. This study has established the baseline taxonomic characterization of microbes associated with dust transported into Kuwait from different trajectories. A high volume air sampler with six-stage cascade impactor was deployed for sample collection at a remote as well as an urban site. Samples from three different seasons (autumn, spring and summer) were subjected to targeted amplicon sequencing. A set of ~ 50 and 60 bacterial and fungal genera, respectively, established the core air microbiome. The predominant bacterial genera (relative abundance ≥ 1%) wereBrevundimonas(12.5%),Sphingobium(3.3%),Sphingopyxis(2.7%),Pseudomonas(2.5%),Sphingomonas(2.4%),Massilia(2.3%),Acidovorax(2.0%),Allorhizobium(1.8%),Halomonas(1.3%), andMesorhizobium(1.1%), and the fungal taxa wereCryptococcus(12%) followed byAlternaria(9%),Aspergillus(7%),Candida(3%),Cladosporium(2.9%),Schizophyllum(1.6%),Fusarium(1.4%),Gleotinia(1.3%) andPenicillium(1.15%). Significant spatio-temporal variations were recorded in terms of relative abundances, α-diversities, and β-diversities of bacterial communities. The dissimilarities were less pronounced and instead the communities were fairly homogenous. Linear discrimant analysis revealed three fungal genera known to be significantly differentially abundant with respect to different size fractions of dust. Our results shed light on the spatio-temporal distribution of airborne microbes and their implications in general health.
The dark ventral patch: A bimodal flexible trait related to male competition in red deer
Authors: Carranza Juan , de la Peña Eva , Mateos Concha , Pérez-González Javier , Alarcos Susana , Torres-Porras Jerónimo , Valencia Juliana , Sánchez-Prieto Cristina , Castillo Leticia
Published: November 2020

Sexual signals play a central role in male-male competition in polygynous species. In red deer (Cervus elaphus), male’s ventral area become dark during the rutting season due to urine spraying behaviour and retains many chemical compounds potentially revealing individual features. Here we investigate the variation in size of this trait, exploring its relationship with age and male competitive features such as antlers or body size, as well as populational level of intrasexual competition for mates. We found that the size of the dark ventral patch followed a clearly bimodal distribution, i.e. males mostly expressed the full-size trait or just developed a very small one. For these two groups of males according to trait expression, the relationships of trait size with age and antler size differed. Populational level of intrasexual competition appeared to affect the relationship between antler size and the probability of a fully developed ventral patch. These results indicate that the trait encodes information on body size, antler size, age and populational level of mate competition, thus suggesting a role in signalling male’s competitive features and willingness to allocate reproductive effort within a particular season.
Complementarity and discriminatory power of genotype and otolith shape in describing the fine-scale population structure of an exploited fish, the common sole of the Eastern English Channel
Authors: Randon Marine , Le Pape Olivier , Ernande Bruno , Mahé Kélig , Volckaert Filip A. M. , Petit Eric J. , Lassalle Gilles , Le Berre Thomas , Réveillac Elodie
Published: November 2020

Marine organisms show population structure at a relatively fine spatial scale, even in open habitats. The tools commonly used to assess subtle patterns of connectivity have diverse levels of resolution and can complement each other to inform on population structure. We assessed and compared the discriminatory power of genetic markers and otolith shape to reveal the population structure on evolutionary and ecological time scales of the common sole (Solea solea), living in the Eastern English Channel (EEC) stock off France and the UK. First, we genotyped fish with Single Nucleotide Polymorphisms to assess population structure at an evolutionary scale. Then, we tested for spatial segregation of the subunits using otolith shape as an integrative tracer of life history. Finally, a supervised machine learning framework was applied to genotypes and otolith phenotypes to probabilistically assign adults to subunits and assess the discriminatory power of each approach. Low but significant genetic differentiation was found among subunits. Moreover, otolith shape appeared to vary spatially, suggesting spatial population structure at fine spatial scale. However, results of the supervised discriminant analyses failed to discriminate among subunits, especially for otolith shape. We suggest that the degree of population segregation may not be strong enough to allow for robust fish assignments. Finally, this study revealed a weak yet existing metapopulation structure of common sole at the fine spatial scale of the EEC based on genotypes and otolith shape, with one subunit being more isolated. Our study argues for the use of complementary tracers to investigate marine population structure.
Multisensor decentralized nonlinear fusion using adaptive cubature information filter
Authors: Guan Binglei , Tang Xianfeng
Published: November 2020

In nonlinear multisensor system, abrupt state changes and unknown variance of measurement noise are very common, which challenges the majority of the previously developed models for precisely known multisensor fusion techniques. In terms of this issue, an adaptive cubature information filter (CIF) is proposed by embedding strong tracking filter (STF) and variational Bayesian (VB) method, and it is extended to multi-sensor fusion under the decentralized fusion framework with feedback. Specifically, the new algorithms use an equivalent description of STF, which avoid the problem of solving Jacobian matrix during determining strong trace fading factor and solve the interdependent problem of combination of STF and VB. Meanwhile, A simple and efficient method for evaluating global fading factor is developed by introducing a parameter variable named fading vector. The analysis shows that compared with the traditional information filter, this filter can effectively reduce the data transmission from the local sensor to the fusion center and decrease the computational burden of the fusion center. Therefore, it can quickly return to the normal error range and has higher estimation accuracy in response to abrupt state changes. Finally, the performance of the developed algorithms is evaluated through a target tracking problem.
A one-year hospital-based prospective COVID-19 open-cohort in the Eastern Mediterranean region: The Khorshid COVID Cohort (KCC) study
Authors: Sami Ramin , Soltaninejad Forogh , Amra Babak , Naderi Zohre , Haghjooy Javanmard Shaghayegh , Iraj Bijan , Haji Ahmadi Somayeh , Shayganfar Azin , Dehghan Mehrnegar , Khademi Nilufar , Sadat Hosseini Nastaran , Mortazavi Mojgan , Mansourian Marjan , Mañanas Miquel Angel , Marateb Hamid Reza , Adibi Peyman
Published: November 2020

The COVID-19 is rapidly scattering worldwide, and the number of cases in the Eastern Mediterranean Region is rising. Thus, there is a need for immediate targeted actions. We designed a longitudinal study in a hot outbreak zone to analyze the serial findings between infected patients for detecting temporal changes from February 2020. In a hospital-based open-cohort study, patients are followed from admission until one year from their discharge (the 1st, 4th, 12th weeks, and the first year). The patient recruitment phase finished at the end of August 2020, and the follow-up continues by the end of August 2021. The measurements included demographic, socio-economics, symptoms, health service diagnosis and treatment, contact history, and psychological variables. The signs improvement, death, length of stay in hospital were considered primary, and impaired pulmonary function and psychotic disorders were considered main secondary outcomes. Moreover, clinical symptoms and respiratory functions are being determined in such follow-ups. Among the first 600 COVID-19 cases, 490 patients with complete information (39% female; the average age of 57±15 years) were analyzed. Seven percent of these patients died. The three main leading causes of admission were: fever (77%), dry cough (73%), and fatigue (69%). The most prevalent comorbidities between COVID-19 patients were hypertension (35%), diabetes (28%), and ischemic heart disease (14%). The percentage of primary composite endpoints (PCEP), defined as death, the use of mechanical ventilation, or admission to an intensive care unit was 18%. The Cox Proportional-Hazards Model for PCEP indicated the following significant risk factors: Oxygen saturation < 80% (HR = 6.3; [CI 95%: 2.5,15.5]), lymphopenia (HR = 3.5; [CI 95%: 2.2,5.5]), Oxygen saturation 80%-90% (HR = 2.5; [CI 95%: 1.1,5.8]), and thrombocytopenia (HR = 1.6; [CI 95%: 1.1,2.5]). This long-term prospective Cohort may support healthcare professionals in the management of resources following this pandemic.
Commonly used clinical chemistry tests as mortality predictors: Results from two large cohort studies
Authors: Lind Lars , Zanetti Daniela , Högman Marieann , Sundman Lars , Ingelsson Erik
Published: November 2020

Background

The normal ranges for clinical chemistry tests are usually defined by cut-offs given by the distribution in healthy individuals. This approach does however not indicate if individuals outside the normal range are more prone to disease.

Methods

We studied the associations and risk prediction of 11 plasma and serum biomarkers with all-cause mortality in two population-based cohorts: a Swedish cohort (X69) initiated in 1969, and the UK Biobank (UKB) initiated in 2006–2010, with up to 48- and 9-years follow-up, respectively.

Results

In X69 and in UKB, 18,529 and 425,264 individuals were investigated, respectively. During the follow-up time, 14,475 deaths occurred in X69 and 17,116 in UKB. All evaluated tests were associated with mortality in X69 (P<0.0001, except bilirubin P<0.005). For calcium, blood urea nitrogen, bilirubin, hematocrit, uric acid, and iron, U-shaped associations were seen (P<0.0001). For leukocyte count, gamma-glutamyl transferase, alkaline phosphatases and lactate dehydrogenase, linear positive associations were seen, while for albumin the association was negative. Similar associations were seen in UKB. Addition of all biomarkers to a model with classical risk factors improved mortality prediction (delta C-statistics: +0.009 in X69 and +0.023 in UKB, P<0.00001 in both cohorts).

Conclusions

Commonly used clinical chemistry tests were associated with all-cause mortality both in the medium- and long-term perspective, and improved mortality prediction beyond classical risk factors. Since both linear and U-shaped relationships were found, we propose to define the normal range of a clinical chemistry test based on its association with mortality, rather than from the distribution.
Quality of reporting of cranial irradiation techniques in randomized controlled trials of primary brain tumors: A systematic review
Authors: Tan Teng Hwee , Chen Desiree , Soon Yu Yang , Chee Seong Tey Jeremy
Published: November 2020

Background

To assess the quality of reporting of cranial irradiation (CR) techniques in randomized controlled trials (RCTs) of primary brain tumors.

Methods

We searched PubMed and EMBASE for RCTs of primary brain tumors, published from January 1999 to November 2019 which included CR as one of the intervention arms. We assessed the initial RCTs report on whether they reported the prespecified ten criteria for CR technique adequately. Multivariable logistic regression was performed to determine the factors that were predictive of adequate quality of reporting.

Results

We found 85 eligible trial reports. There was significant variability in the quality of reporting among the included studies. Total radiotherapy (RT) dose and fractionation schedule were reported adequately in more than 90% of the included trials. The organs at risk dose constraints, treatment verification procedures and presence or absence of deviations in RT treatment planning and delivery were reported adequately in less than 30% of included trials. Twenty-three trials (27%) reported seven criteria or more adequately. Multivariable analysis showed that trials conducted by cooperative groups, published RT quality assurance results and having a low risk of bias in the methodological quality have higher odds of having adequate quality in reporting of CR technique (judged as adequate reporting in seven criteria or more).

Conclusions

The quality of reporting on CR techniques in the RCTs of primary brain tumors is variable and suboptimal. Guidelines should be introduced to improve clarity and ensure consistency in the quality of reporting.
Empirical evaluation of the presence of a label containing standard drinks on pour accuracy among US college students
Authors: Brunk Eric , Becker Mark W. , Bix Laura
Published: November 2020

Purpose

Alcohol concentration has traditionally been labeled in the form of alcohol by volume (ABV). This format can cause difficulty in evaluating accuracy of a pour because it doesn’t directly connect with recommendations related to “standard drinks,” the approach used by the US CDC and others organizations which intend to facilitate responsible drinking behaviors. Strategies which more directly connect guidelines related to healthy drinking behaviors to alcohol labeling are needed.

Objective

Assess how a label identifying the number of standard drinks per container impacts the ability of undergraduate students to accurately pour a standard drink.

Design

This study employed a 3 x 2 x 2 experimental design. Undergraduates were asked to pour a standard drink from mock products from three alcohol categories (beer, wine and liquor); products were presented in two types of label (traditional ABV vs. standard drinks/container) at two concentrations of alcohol content (high and low).

Results

We calculated standardized pour errors (pour errors in standard drink units). Analysis of these standardized pour errors suggested that 1) people tended to underpour beverages of low concentration across product categories and overpour those high in concentration. 2) When the standard drink label was present, pour accuracy was improved, when compared with pours from containers affixed with ABV labels in low alcohol concentrations across all product categories (beer, wine and liquor). 3) For treatments that comprised high concentrations of alcohol, the standard drink label significantly increased accuracy only for beer. However, it is worth noting that beer with an ABV label was the condition with the most dramatic overpours, and these problematic overpours were dramatically reduced by the addition of a standard drink label.

Conclusions

Our work empirically supports the notion that Undergraduate students are better able to accurately assess and pour a standard drink of alcohol from bottles incorporating a label which includes standard drinks/container vs. those with traditional ABV labeling. That said, the effect is quite different for each alcohol category: beer, wine, and liquor and depends on whether the product is high or low in concentration of alcohol for its category; as such, policy makers should consider alcohol categories and concentrations from a public health perspective when recommending changes to labeling.
Excessive boredom among adolescents: A comparison between low and high achievers
Authors: Schwartze Manuel M. , Frenzel Anne C. , Goetz Thomas , Marx Anton K. G. , Reck Corinna , Pekrun Reinhard , Fiedler Daniel
Published: November 2020

Existing research shows that high achievement boredom is correlated with a range of undesirable behavioral and personality variables and that the main antecedents of boredom are being over- or under-challenged. However, merely knowing that students are highly bored, without taking their achievement level into account, might be insufficient for drawing conclusions about students’ behavior and personality. We, therefore, investigated if low- vs. high-achieving students who experience strong mathematics boredom show different behaviors and personality traits. The sample consisted of 1,404 German secondary school students (fifth to 10th grade, mean age 12.83 years, 52% female). We used self-report instruments to assess boredom in mathematics, behavioral (social and emotional problems, positive/negative affect, cognitive reappraisal, and expressive suppression), and personality variables (neuroticism and conscientiousness). In comparing highly bored students (more than one SD above M, n = 258) who were low vs. high achievers (as indicated by the math grade, n = 125 / n = 119), results showed that there were no mean level differences across those groups for all variables. In conclusion, our results suggest that high boredom can occur in both low- and high-achieving students and that bored low- and high-achievers show similar behaviors and personality profiles.
Testing the stability of theory of mind: A longitudinal approach
Authors: Poulin-Dubois Diane , Azar Naomi , Elkaim Brandon , Burnside Kimberly
Published: November 2020

An explicit understanding of false belief develops around the age of four years. However, tasks based on spontaneous responses have revealed an implicit understanding of belief and other theory of mind constructs in infants in their second year of life. The few longitudinal studies that have examined conceptual continuity of theory of mind from infancy to early childhood have reported mixed findings. Here we report two longitudinal experiments to investigate the developmental relation between implicit and explicit theory of mind. No link was observed in the first experiment between false belief and intention understanding measured at 14 and 18 months with the violation of expectation paradigm and tasks measuring explicit and implicit false belief at four or five years of age. In the second experiment, infants aged 18 months were tested with a battery of tasks that measured knowledge inference and false belief. They were then tested with the theory of mind scale at five years of age. The parents completed the Children’s Social Understanding Scale (CSUS) and the Social Communication Questionnaire (SCQ). As in the first experiment, there were no associations between early and later forms of theory of mind. We suggest that these findings do not support the view that there is conceptual continuity in theory of mind development.
Vocal repertoire and consistency of call features in the meagre Argyrosomous regius (Asso, 1801)
Authors: Bolgan Marta , Pereira Beatriz P. , Crucianelli Aurora , Mylonas Constantinos C. , Pousão-Ferreira Pedro , Parmentier Eric , Fonseca Paulo J. , Amorim M. Clara P.
Published: November 2020

Passive Acoustic Monitoring (PAM) is a non-intrusive and cost-effective method capable of providing high-resolution, long-term information on the status and health of vocal populations and communities. To successfully monitor the same species over wide geographical and temporal scales, it is necessary to characterise the range of sound variability, as well as the consistency of sound features between populations. The meagre (Argyrosomus regius, Asso 1801) is an interesting case study because recent investigations suggest a wider vocal repertoire than previously described. In this study, meagre vocalizations were recorded and analysed from a variety of settings, ranging from rearing facilities to wild populations to provide a comprehensive characterisation of its vocal repertoire, while investigating the consistency of spawning sound features between populations. All sounds presented a similar acoustic structure in their basic unit (i.e. the pulse), while an important variability was found in the number of pulses; the meagre can emit sounds made of one single pulse or many pulses (up to more than 100). High level of overlap in the Principal Component Analysis made difficult to differentiate sound type clusters. Despite this, two sound types were identifiable: knocks (sounds from 1 to 3 pulses) and long grunts (sounds with more than 29 pulses). Discriminant Analysis carried out on PCA residuals showed that knock had the highest proportion of correct placement (92% of the observations correctly placed) followed by long grunts (80%). All other previously described sound types (intermediate grunt, short grunt and disturbance sounds) could not be separated and presented low levels of correct placement, suggesting that care should be taken when defining these as independent sound types. Finally, acoustic features consistency was found in meagre grunts emitted by different populations during spawning nights; statistical differences could be explained by recording settings and fish conditions. The results of this study provide important information for fostering PAM programs of wild meagre populations, while contributing to the discussion around the definition of fish sound types in vocal fish communities. Studies of this kind, which evaluate both variability and consistency of sound features, are of fundamental importance for maximising PAM efforts in the wild, at both the specific and the community level.
Higher temperatures and lower annual rainfall do not restrict, directly or indirectly, the mycorrhizal colonization of barley (Hordeum vulgare L.) under rainfed conditions
Authors: Jerbi Maroua , Labidi Sonia , Lounès-Hadj Sahraoui Anissa , Chaar Hatem , Ben Jeddi Faysal
Published: November 2020

Whereas the role of arbuscular mycorrhizal fungi (AMF) in plant growth improvement has been well described in agroecosystems, little is known about the effect of environmental factors on AMF root colonization status of barley, the fourth most important cereal crop all over the world. In order to understand the influence of environmental factors, such as climatic and soil physico-chemical properties, on the spontaneous mycorrhizal ability of barley (Hordeum vulgare L.), a field investigation was conducted in 31 different sites in sub-humid, upper and middle semi-arid areas of Northern Tunisia. Mycorrhizal root colonization of H. vulgare varied considerably among sites. Principal component analysis showed that barley mycorrhization is influenced by both climatic and edaphic factors. A partial least square structural equation modelling (PLS-SEM) revealed that 39% (R²) of the total variation in AMF mycorrhizal rate of barley roots was mainly explained by chemical soil properties and climatic characteristics. Whereas barley root mycorrhizal rates were inversely correlated with soil organic nitrogen (ON), available phosphorus amounts (P), altitude (Z), average annual rainfall (AAR), they were directly correlated with soil pH and temperature. Our results indicated that AMF root colonization of barley was strongly related to climatic characteristics than chemical soil properties. The current study highlights the importance of the PLS-SEM to understand the interactions between climate, soil properties and AMF symbiosis of barley in field conditions.
RNase H-dependent PCR enables highly specific amplification of antibody variable domains from single B-cells
Authors: Crissman John , Lin Yuhao , Separa Kevin , Duquette Madeleine , Cohen Michael , Velasquez Candyd , Cujec Thomas
Published: November 2020

Immunization-based antibody discovery platforms require robust and effective protocols for the amplification, cloning, expression, and screening of antibodies from large numbers of B-cells in order to effectively capture the diversity of an experienced Ig-repertoire. Multiplex PCR using a series of forward and reverse primers designed to recover antibodies from a range of different germline sequences is challenging because primer design requires the recovery of full length antibody sequences, low starting template concentrations, and the need for all the primers to function under the same PCR conditions. Here we demonstrate several advantages to incorporating RNase H2-dependent PCR (rh-PCR) into a high-throughput, antibody-discovery platform. Firstly, rh-PCR eliminated primer dimer synthesis to below detectable levels, thereby eliminating clones with a false positive antibody titer. Secondly, by increasing the specificity of PCR, the rh-PCR primers increased the recovery of cognate antibody variable regions from single B-cells, as well as downstream recombinant antibody titers. Finally, we demonstrate that rh-PCR primers provide a more homogeneous sample pool and greater sequence quality in a Next Generation Sequencing-based approach to obtaining DNA sequence information from large numbers of cloned antibody cognate pairs. Furthermore, the higher specificity of the rh-PCR primers allowed for a better match between native antibody germline sequences and the VL/VH fragments amplified from single B-cells.
Toxicodendron vernicifluum Stokes extract inhibits solid tumor growth and lung metastasis of 4T1 murine mammary carcinoma cells in BALB/c mice
Authors: Lee Hyun Sook , Jung Jae In , Kim Kyeong-Hee , Park Sang Jae , Kim Eun Ji
Published: November 2020

Toxicodendron vernicifluum Stokes has long been used as a food supplement and traditional herbal medicine in East Asia. We applied a new extraction method to produce Toxicodendron vernicifluum Stokes extract (TVSE), that doesn’t contain urushiol (an allergenic toxin) but dose have higher levels of some flavonoids such as fustin and fisetin. This study was conducted to investigate the anticancer effects of TVSE in an in vivo system. Fifty BALB/c mice were acclimated for one week and then injected with 4T1 murine mammary carcinoma cells in mammary fat pads. After 7 days, the mice were randomly divided into 5 groups, and orally administered with 0, 50, 100, 200 or 400 mg of TVSE/kg body weight (BW)/day for 20 days. TVSE reduced tumor volume and weight dose-dependently. The expression of Ki67 was significantly reduced and the number of TUNEL-positive apoptotic cells was significantly increased in the TVSE-treated group over 100 mg/kg BW/day. While tumor nodules were not found in the liver, but only in lungs, the number of tumor nodules was reduced in a dose-dependent manner in the TVSE treated groups compared to the control group. In breast tumors, expression of platelet endothelial cell adhesion molecule (PECAM-1) and vascular endothelial growth factor (VEGF) was reduced by TVSE treatment. TVSE treatment significantly suppressed mRNA expression in tumors of matrix metalloproteinase (MMP)-2, tissue inhibitor of metalloproteinase (TIMP)-1, urokinase-type plasminogen activator (uPA), intercellular adhesion molecule (ICAM)-1, and vascular cell adhesion molecule (VCAM)-1 while increasing plasminogen activator inhibitor (PAI)-1. These results suggest that TVSE is potentially beneficial for the suppression of breast cancer growth and its-associated lung metastasis.
Caffeine reverses the unconsciousness produced by light anesthesia in the continued presence of isoflurane in rats
Authors: Fox Aaron P. , Wagner Kyle R. , Towle Vernon L. , Xie Kelvin G. , Xie Zheng
Published: November 2020

Currently no drugs are employed clinically to reverse the unconsciousness induced by general anesthetics. Our previous studies showed that caffeine, when given near the end of an anesthesia session, accelerated emergence from isoflurane anesthesia, likely caused by caffeine’s ability to elevate intracellular cAMP levels and to block adenosine receptors. These earlier studies showed that caffeine did not rouse either rats or humans from deep anesthesia (≥ 1 minimum alveolar concentration, MAC). In this current crossover study, we examined whether caffeine reversed the unconsciousness produced by light anesthesia (< 1 MAC) in the continued presence of isoflurane. The primary endpoint of this study was to measure isoflurane levels at the time of recovery of righting reflex, which was a proxy for consciousness. Rats were deeply anesthetized with 2% isoflurane (~1.5 MAC) for 20 minutes. Subsequently, isoflurane was reduced to 1.2% for 10 minutes, then by 0.2% every 10 min; animals were monitored until the recovery of righting reflex occurred, in the continued presence of isoflurane. Respiration rate, heart rate and electroencephalogram (EEG) were monitored. Our results show that caffeine-treated rats recovered their righting reflex at a significantly higher inspired isoflurane concentration, corresponding to light anesthesia, than the same rats treated with saline (control). Respiration rate and heart rate increased initially after caffeine injection but were then unchanged for the rest of the anesthesia session. Deep anesthesia is correlated with burst suppression in EEG recordings. Our data showed that caffeine transiently reduced the burst suppression time produced by deep anesthesia, suggesting that caffeine altered neuronal circuit function but not to a point where it caused arousal. In contrast, under light anesthesia, caffeine shifted the EEG power to high frequency beta and gamma bands. These data suggest that caffeine may represent a clinically viable drug to reverse the unconsciousness produced by light anesthesia.
Dynamic MRI of plantar flexion: A comprehensive repeatability study of electrical stimulation-gated muscle contraction standardized on evoked force
Authors: Deligianni Xeni , Hirschmann Anna , Place Nicolas , Bieri Oliver , Santini Francesco
Published: November 2020

Quantification of skeletal muscle contraction in Magnetic Resonance Imaging (MRI) is a non-invasive method for studying muscle motion and deformation. The aim of this study was to evaluate the repeatability of quantitative measures such as strain, based on single slice dynamic MRI synchronized with neuromuscular electrical stimulation (NMES) and standardized to a similar relative force level across various individuals. Unilateral electrical stimulation of the triceps surae muscles was applied in eight volunteers during single-slice, three-directional phase contrast MRI acquisition at a 3T MRI scanner. To assess repeatability, the same process was executed on two different days by standardizing the stimulation aiming at evoking a fixed percentage of their maximal voluntary force in the same position. Except from the force, the effect of using the current as reference was evaluated on day two as a secondary acquisition. Finally, the presence of fatigue induced by NMES was assessed (on day one) by examining the difference between consecutive measurements. Strain maps were derived from the acquired slice at every time point; distribution of strain in the muscle and peak strain over the muscle of interest were evaluated for repeatability. It was found that fatigue did not have an appreciable effect on the results. The stimulation settings based on evoked force produced more repeatable results with respect to using the current as the only reference, with an intraclass correlation coefficient between different days of 0.95 for the former versus 0.88 for the latter. In conclusion, for repeatable strain imaging it is advisable to record the force output of the evoked contraction and use that for the standardization of the NMES setup rather than the current.