bluuebunny/crossref_metadata_2025 huggingface dataset:
Relevance of Membrane Contact Sites in Cancer Progression
Authors: Gil-Hernández Aurora , Arroyo-Campuzano Miguel , Simoni-Nieves Arturo , Zazueta Cecilia , Gomez-Quiroz Luis Enrique , Silva-Palacios Alejandro
Published: January 2021

Membrane contact sites (MCS) are typically defined as areas of proximity between heterologous or homologous membranes characterized by specific proteins. The study of MCS is considered as an emergent field that shows how crucial organelle interactions are in cell physiology. MCS regulate a myriad of physiological processes such as apoptosis, calcium, and lipid signaling, just to name a few. The membranal interactions between the endoplasmic reticulum (ER)–mitochondria, the ER–plasma membrane, and the vesicular traffic have received special attention in recent years, particularly in cancer research, in which it has been proposed that MCS regulate tumor metabolism and fate, contributing to their progression. However, as the therapeutic or diagnostic potential of MCS has not been fully revisited, in this review, we provide recent information on MCS relevance on calcium and lipid signaling in cancer cells and on its role in tumor progression. We also describe some proteins associated with MCS, like CERT, STIM1, VDAC, and Orai, that impact on cancer progression and that could be a possible diagnostic marker. Overall, these information might contribute to the understanding of the complex biology of cancer cells.
Reflecting on Social Learning Tools to Enhance the Teaching-Learning Experience of Generation Z Learners
Authors: Cilliers Elizelle Juanee
Published: January 2021

Limited research has considered social learning tools and preferences of the Generation Z learner from a higher educational perspective. This research is based on the educational theories of constructivism and social learning, in attempt to reflect on social learning tools employed in a third year Urban and Regional Planning module at the North-West University (South Africa). The empirical investigation was based on the reflections from Generation Z learners who were introduced to a range of social media tools. The paper aimed to investigate if social learning tools can positively impact the learner experience in the contemporary classroom based on longitudinal data. It identified the preferences of the Generation Z learners in terms of social media tools, and the trends thereof, during a 10-year period (2011–2020). Finally, the paper drew on the perspective of the educator, in reflecting on the challenges, but also scope, to include social learning tools as part of higher education teaching-learning.
Novel Multiplicity and Stability Criteria for Non-Isothermal Fixed-Bed Reactors
Authors: Bremer Jens , Sundmacher Kai
Published: January 2021

With the increasing need to utilize carbon dioxide, fixed-bed reactors for catalytic hydrogenation will become a decisive element for modern chemicals and energy carrier production. In this context, the resilience and flexibility to changing operating conditions become major objectives for the design and operation of real industrial-scale reactors. Therefore steady-state multiplicity and stability are essential measures, but so far, their quantification is primarily accessible for ideal reactor concepts with zero or infinite back-mixing. Based on a continuous stirred tank reactor cascade modeling approach, this work derives novel criteria for stability, multiplicity, and uniqueness applicable to real reactors with finite back-mixing. Furthermore, the connection to other reactor features such as runaway and parametric sensitivity is demonstrated and exemplified for CO2 methanation under realistic conditions. The new criteria indicate that thermo-kinetic multiplicities induced by back-mixing remain relevant even for high Bodenstein numbers. In consequence, generally accepted back-mixing criteria (e.g., Mears’ criterion) appear insufficient for real non-isothermal reactors. The criteria derived in this work are applicable to any exothermic reaction and reactors at any scale. Ignoring uniqueness and multiplicity would disregard a broad operating range and thus a substantial potential for reactor resilience and flexibility.
Springtime Drought Shifts Carbon Partitioning of Recent Photosynthates in 10-Year Old Picea mariana Trees, Causing Restricted Canopy Development
Authors: Jensen Anna M. , Eckert Diana , Carter Kelsey R. , Persson Maria , Warren Jeffrey M.
Published: January 2021

Springtime bud-break and shoot development induces substantial carbon (C) costs in trees. Drought stress during shoot development can impede C uptake and translocation. This is therefore a channel through which water shortage can lead to restricted shoot expansion and physiological capacity, which in turn may impact annual canopy C uptake. We studied effects of drought and re-hydration on early season shoot development, C uptake and partitioning in five individual 10-year old Picea mariana [black spruce] trees to identify and quantify dynamics of key morphological/physiological processes. Trees were subjected to one of two treatments: (i) well-watered control or (ii) drought and rehydration. We monitored changes in morphological [shoot volume, leaf mass area (LMA)], biochemical [osmolality, non-structural carbohydrates (NSC)] and physiological [rates of respiration (Rd) and light-saturated photosynthesis (Asat)] processes during shoot development. Further, to study functional compartmentalization and use of new assimilates, we 13C-pulse labeled shoots at multiple development stages, and measured isotopic signatures of leaf respiration, NSC pools and structural biomass. Shoot water potential dropped to a minimum of −2.5 MPa in shoots on the droughted trees. Development of the photosynthetic apparatus was delayed, as shoots on well-watered trees broke-even 14 days prior to shoots from trees exposed to water deficit. Rd decreased with shoot maturation as growth respiration declined, and was lower in shoots exposed to drought. We found that shoot development was delayed by drought, and while rehydration resulted in recovery of Asat to similar levels as shoots on the well-watered trees, shoot volume remained lower. Water deficit during shoot expansion resulted in longer, yet more compact (i.e., with greater LMA) shoots with greater needle osmolality. The 12C:13C isotopic patterns indicated that internal C partitioning and use was dependent on foliar developmental and hydration status. Shoots on drought-stressed trees prioritized allocating newly fixed C to respiration over structural components. In conclusion, temporary water deficit delayed new shoot development and resulted in greater LMA in black spruce. Since evergreen species such as black spruce retain active foliage for multiple years, impacts of early season drought on net primary productivity could be carried forward into subsequent years.
An Integrated Transcriptome Analysis Reveals IGFBP7 Upregulation in Vasculature in Traumatic Brain Injury
Authors: Wang Jianhao , Deng Xiangyi , Xie Yuan , Tang Jiefu , Zhou Ziwei , Yang Fan , He Qiyuan , Cao Qingze , Zhang Lei , He Liqun
Published: January 2021

Vasculature plays critical roles in the pathogenesis and neurological repair of traumatic brain injury (TBI). However, how vascular endothelial cells respond to TBI at the molecular level has not been systematically reviewed. Here, by integrating three transcriptome datasets including whole cortex of mouse brain, FACS-sorted mouse brain endothelial cells, and single cell sequencing of mouse brain hippocampus, we revealed the key molecular alteration of endothelial cells characterized by increased Myc targets and Epithelial-Mesenchymal Transition signatures. In addition, immunofluorescence staining of patients’ samples confirmed that IGFBP7 was up-regulated in vasculature in response to TBI. TGFβ1, mainly derived from microglia and endothelial cells, sufficiently induces IGFBP7 expression in cultured endothelial cells, and is significantly upregulated in response to TBI. Our results identified IGFBP7 as a potential biomarker of vasculature in response to TBI, and indicate that TGFβ signaling may contribute to the upregulation of IGFBP7 in the vasculature.
Whole-Exome Sequencing Uncovers Novel Causative Variants and Additional Findings in Three Patients Affected by Glycogen Storage Disease Type VI and Fanconi−Bickel Syndrome
Authors: Eghbali Maryam , Fatemi Kiyana Sadat , Salehpour Shadab , Abiri Maryam , Saei Hassan , Talebi Saeed , Olyaei Nasrin Alipour , Yassaee Vahid Reza , Modarressi Mohammad Hossein
Published: January 2021

Glycogen storage diseases (GSDs) are the heterogeneous group of disorders caused by mutations in at least 30 different genes. Different types of GSDs, especially liver GSDs, take overlapping symptoms and can be clinically indistinguishable. This survey evaluated the use of whole-exome sequencing (WES) for the genetic analysis of the liver GSD-suspected patients in three unrelated families. An in-house filtering pipeline was used to assess rare pathogenic variants in GSD-associated genes, autosomal recessive/mendelian disorder genes (carrier status for genetic counseling subjects), and the ACMG’s list of 59 actionable genes. For the interpretation of the causative variants and the incidental/secondary findings, ACMG guidelines were applied. Additionally, we have explored PharmGKB class IA/IB pharmacogenetic variants. The segregation analysis was performed using Sanger sequencing for the novel causative variants. Bioinformatics analysis of the exome data in three individuals revealed three novel homozygous causative variants in the GSD-associated genes. The first variant, c.298_307delATGATCAACC in PYGL gene has related to HERS disease (GSD VI). Both variants of c.1043dupT and c.613-1G > C in SLC2A2 gene have been associated with Fanconi-Bickel syndrome (GSDXI). Eight pathogenic/likely pathogenic medical actionable findings in Mendelian disease genes and 10 pharmacogenetic variants with underlying drug response phenotypes have been identified. No known/expected pathogenic variants were detected in the ACMG’s list of 59 actionable genes. The logical filtering steps can help in finding other medical actionable secondary/incidental findings as well as effectively identifying the causative variants in heterogeneous conditions such as GSDs. Three novel variants related to GSD genes recognized in liver GSD-suspected patients with early infantile and childhood-age onset.
Identification of MicroRNA-92a-3p as an Essential Regulator of Tubular Epithelial Cell Pyroptosis by Targeting Nrf1 via HO-1
Authors: Wang Renhe , Zhao Haijun , Zhang Yingyu , Zhu Hai , Su Qiuju , Qi Haiyan , Deng Jun , Xiao Chengcheng
Published: January 2021

Renal ischemia–reperfusion injury (IRI) is a major cause of acute kidney injury (AKI) and has no effective treatment. Exploring the molecular mechanisms of renal IRI is critical for the prevention of AKI and its evolution to chronic kidney disease and end-stage renal disease. The aim of the present study was to determine the biological function and molecular mechanism of action of miR-92a-3p in tubular epithelial cell (TEC) pyroptosis. We investigated the relationship between nuclear factor-erythroid 2-related factor 1 (Nrf1) and TEC pyroptosis induced by ischemia–reperfusion in vivo and oxygen–glucose deprivation/reoxygenation (OGD/R) in vitro. MicroRNAs (miRNAs) are regulators of gene expression and play a role in the progression of renal IRI. Nrf1 was confirmed as a potential target for miRNA miR-92a-3p. In addition, the inhibition of miR-92a-3p alleviated oxidative stress in vitro and decreased the expression levels of NLRP3, caspase-1, GSDMD-N, IL-1β, and IL-18 in vitro and in vivo. Moreover, Zn-protoporphyrin-IX, an inhibitor of heme oxygenase-1, reduced the protective effect of Nrf1 overexpression on OGD/R-induced TEC oxidative stress and pyroptosis. The results of this study suggest that the inhibition of miR-92a-3p can alleviate TEC oxidative stress and pyroptosis by targeting Nrf1 in renal IRI.
Vaccination and Infection of Swine With Salmonella Typhimurium Induces a Systemic and Local Multifunctional CD4+ T-Cell Response
Authors: Schmidt Selma , Sassu Elena L. , Vatzia Eleni , Pierron Alix , Lagler Julia , Mair Kerstin H. , Stadler Maria , Knecht Christian , Spergser Joachim , Dolezal Marlies , Springer Sven , Theuß Tobias , Fachinger Vicky , Ladinig Andrea , Saalmüller Armin , Gerner Wilhelm
Published: January 2021

The gram-negative facultative intracellular bacteriaSalmonellaTyphimurium (STM) often leads to subclinical infections in pigs, but can also cause severe enterocolitis in this species. Due to its high zoonotic potential, the pathogen is likewise dangerous for humans. Vaccination with a live attenuated STM strain (Salmoporc) is regarded as an effective method to control STM infections in affected pig herds. However, information on the cellular immune response of swine against STM is still scarce. In this study, we investigated the T-cell immune response in pigs that were vaccinated twice with Salmoporc followed by a challenge infection with a virulent STM strain. Blood- and organ-derived lymphocytes (spleen, tonsils, jejunal and ileocolic lymph nodes, jejunum, ileum) were stimulatedin vitrowith heat-inactivated STM. Subsequently, CD4+T cells present in these cell preparations were analyzed for the production of IFN-γ, TNF-α, and IL-17A by flow cytometry and Boolean gating. Highest frequencies of STM-specific cytokine-producing CD4+T cells were found in lamina propria lymphocytes of jejunum and ileum. Significant differences of the relative abundance of cytokine-producing phenotypes between control group and vaccinated + infected animals were detected in most organs, but dominated in gut and lymph node-residing CD4+T cells. IL-17A producing CD4+T cells dominated in gut and gut-draining lymph nodes, whereas IFN-γ/TNF-α co-producing CD4+T cells were present in all locations. Additionally, the majority of cytokine-producing CD4+T cells had a CD8α+CD27-phenotype, indicative of a late effector or effector memory stage of differentiation. In summary, we show thatSalmonella-specific multifunctional CD4+T cells exist in vaccinated and infected pigs, dominate in the gut and most likely contribute to protective immunity against STM in the pig.
Energetic Effects of Whale-Watching Boats on Humpback Whales on a Breeding Ground
Authors: Villagra Damian , García-Cegarra Ana , Gallardo Diego I. , Pacheco Aldo S.
Published: January 2021

Interactions between whale-watching boats and cetaceans can lead to changes in their behavior. From a management perspective, it is important to understand how this type of disturbance can be translated into physiological effects, such as changes in their energetic metabolism. Humpback whales (Megaptera novaeangliae) typically do not feed while in breeding grounds, thus they depend on finite energy reserves. The effect of whale-watching boats on the energetic metabolism of humpback whales, in the breeding ground of northern Peru (4°10′35″S, 81°08′03″W) was evaluated. Groups of humpback whales were tracked from land, under the following scenarios: with, without, and before-during-after the presence of whale-watching boats. Mass-specific cost of transport (COT) was used as a proxy of energetic efficiency and calculated from swimming speed and breath frequency estimations. No differences were detected in breath frequency, swimming speed, and COT when comparing whales with and without boats. However, in the presence of boats, swim speed increased, and COT decreased as the number of boats increased. Exponential increment in breathing frequency at higher swimming speed was not detected. The absence of swimming speeds beyond the assumed optimal range suggested no shifts into metabolic inefficiency. Our results suggest optimal swimming speed between 2 and 4.05 m/s, representing COT values between 0.020 and 0.041 J × (kg × m)–1. In light of our results, we encourage the implementation of regulations of the activity, particularly limiting the number of boats interacting with the same group of humpback whales.
Characterization of pncA Mutations and Prediction of PZA Resistance in Mycobacterium tuberculosis Clinical Isolates From Chongqing, China
Authors: Li Kun , Yang Zhongping , Gu Jing , Luo Ming , Deng Jiaoyu , Chen Yaokai
Published: January 2021

Pyrazinamide (PZA) is widely used to treat drug-sensitive or multidrug resistance tuberculosis. However, conventional PZA susceptibility tests of clinical isolates are rather difficult because of the requirement of acid pH. Since resistance to pyrazinamide is primary mediated by mutation of pncA, an alternative way of PZA susceptibility test is to analyze the pyrazinamidase activities of Mycobacterium tuberculosis clinical isolates. Therefore, a database containing the full spectrum of pncA mutations along with pyrazinamidase activities will be beneficial. To characterize mutations of pncA in M. tuberculosis from Chongqing, China, the pncA gene was sequenced and analyzed in 465 clinical isolates. A total of 124 types of mutations were identified in 424 drug-resistant isolates, while no mutation was identified in the 31 pan-susceptible isolates. Ninety-four of the 124 mutations had previously been reported, and 30 new mutations were identified. Based on reported literatures, 294 isolates could be predicted resistant to pyrazinamide. Furthermore, pyrazinamidase activities of the 30 new mutations were tested using the Escherichia coli pncA gene knockout strain. The results showed that 24 of these new mutations (28 isolates) led to loss of pyrazinamidase activity and six (8 isolates) of them did not. Taken together, 322 isolates with pncA mutations could be predicted to be PZA resistant among the 424 drug-resistant isolates tested. Analysis of pncA mutations and their effects on pyrazinamidase activity will not only enrich our knowledge of comprehensive pncA mutations related with PZA resistance but also facilitate rapid molecular diagnosis of pyrazinamide resistance in M. tuberculosis.
Analysing Head-Thorax Choreography During Free-Flights in Bumblebees
Authors: Odenthal Luise , Doussot Charlotte , Meyer Stefan , Bertrand Olivier J. N.
Published: January 2021

Animals coordinate their various body parts, sometimes in elaborate manners to swim, walk, climb, fly, and navigate their environment. The coordination of body parts is essential to behaviors such as, chasing, escaping, landing, and the extraction of relevant information. For example, by shaping the movement of the head and body in an active and controlled manner, flying insects structure their flights to facilitate the acquisition of distance information. They condense their turns into a short period of time (the saccade) interspaced by a relatively long translation (the intersaccade). However, due to technological limitations, the precise coordination of the head and thorax during insects' free-flight remains unclear. Here, we propose methods to analyse the orientation of the head and thorax of bumblebeesBombus terrestris, to segregate the trajectories of flying insects into saccades and intersaccades by using supervised machine learning (ML) techniques, and finally to analyse the coordination between head and thorax by using artificial neural networks (ANN). The segregation of flights into saccades and intersaccades by ML, based on the thorax angular velocities, decreased the misclassification by 12% compared to classically used methods. Our results demonstrate how machine learning techniques can be used to improve the analyses of insect flight structures and to learn about the complexity of head-body coordination. We anticipate our assay to be a starting point for more sophisticated experiments and analysis on freely flying insects. For example, the coordination of head and body movements during collision avoidance, chasing behavior, or negotiation of gaps could be investigated by monitoring the head and thorax orientation of freely flying insects within and across behavioral tasks, and in different species.
Deep Network for the Automatic Segmentation and Quantification of Intracranial Hemorrhage on CT
Authors: Xu Jun , Zhang Rongguo , Zhou Zijian , Wu Chunxue , Gong Qiang , Zhang Huiling , Wu Shuang , Wu Gang , Deng Yufeng , Xia Chen , Ma Jun
Published: January 2021

Background

The ABC/2 method is usually applied to evaluate intracerebral hemorrhage (ICH) volume on computed tomography (CT), although it might be inaccurate and not applicable in estimating extradural or subdural hemorrhage (EDH, SDH) volume due to their irregular hematoma shapes. This study aimed to evaluate deep framework optimized for the segmentation and quantification of ICH, EDH, and SDH.

Methods

The training datasets were 3,000 images retrospectively collected from a collaborating hospital (Hospital A) and segmented by the Dense U-Net framework. Three experienced radiologists determined the ground truth by marking the pixels as hemorrhage area. We utilized the Dice and intra-class correlation coefficients (ICC) to test the reliability of the ground truth. Moreover, the testing datasets consisted of 211 images (internal test) from Hospital A, and 86 ICH images (external test) from another hospital (Hospital B). In this study, we chose scatter plots, ICC, and Pearson correlation coefficients (PCC) with ground truth to evaluate the performance of the deep framework. Furthermore, to validate the effectiveness of the deep framework, we did a comparative analysis of the hemorrhage volume estimation between the deep model and the ABC/2 method.

Results

The high Dice (0.89–0.95) and ICC (0.985–0.997) showed the consistency of the manual segmentations among the radiologists and the reliability of the ground truth. For the internal test, the Dice coefficients of ICH, EDH, and SDH were 0.90 ± 0.06, 0.88 ± 0.12, and 0.82 ± 0.16, respectively. For the external test, the segmentation Dice was 0.86 ± 0.09. Comparatively, the ICC and PCC of ICH volume estimations were 0.99 performed by Dense U-Net that overmatched the ABC/2 method.

Conclusion

This study revealed the excellent performance of hematoma segmentation and volume evaluation based on Dense U-Net, which indicated our deep framework might contribute to efficiently developing treatment strategies for intracranial hemorrhage in clinics.
Anisotropic Psychophysical Trends in the Discrimination of Tactile Direction in a Precision Grip
Authors: Tanner Justin , Newman Naomi , Helms Tillery Stephen
Published: January 2021

Tactile cues arising from interactions with objects have a sense of directionality which affects grasp. Low latency responses to varied grip perturbations indicate that grasp safety margins are exaggerated in certain directions and conditions. In a grip with the ulnar-radial axis vertical, evidence suggests that distal and downward directions are more sensitive to task parameters and have larger safety margins. This suggests that, for the purpose of applying forces with the fingers, reference frames with respect to the hand and gravity are both in operation. In this experiment, we examined human sensitivities to the direction of tactile movement in the context of precision grip in orientations either orthogonal to or parallel to gravity. Subjects performed a two-alternative-forced-choice task involving a textured cube which moved orthogonal to their grip axis. Subjects’ arms were placed in a brace that allowed for finger movement but minimized arm movement. Movement of thumb and index joints were monitored via PhaseSpace motion capture. The subject was presented with a textured cube and instructed to lightly grasp the cube, as if it were slipping. In each trial the object was first translated 1 cm in 0° (proximal), 90° (radial), 180° (distal), or 270° (ulnar) and returned to its origin. This primary stimulus was immediately followed by a 10 mm secondary stimulus at a random 5° interval between −30° and 30° of the primary stimulus. Response from the subject after each pair of stimuli indicated whether the test direction felt the same as or different from the primary stimulus. Traditional bias and sensitivity analyses did not provide conclusive results but suggested that performance is best in the ulnar-radial axis regardless of gravity. Modeling of the response curve generated a detection threshold for each primary stimulus. Lower thresholds, indicating improved detection, persisted in the ulnar-radial axis. Anisotropic thresholds of increased detection appear to coincide with digit displacement and appear to be independent of the grasp orientation.
Auditory Brainstem Response to Paired Click Stimulation as an Indicator of Peripheral Synaptic Health in Noise-Induced Cochlear Synaptopathy
Authors: Lee Jae-Hun , Lee Min Young , Choi Ji Eun , Jung Jae Yun
Published: January 2021

Introduction

A defect in the cochlear afferent synapse between the inner hair cells and spiral ganglion neurons, after noise exposure, without changes in the hearing threshold has been reported. Animal studies on auditory evoked potentials demonstrated changes in the auditory brainstem response (ABR) measurements of peak I amplitude and the loss of synapses, which affect the temporal resolution of complex sounds. Human studies of auditory evoked potential have reported ambiguous results regarding the relationship between peak I amplitude and noise exposure. Paired click stimuli have been used to investigate the temporal processing abilities of humans and animals. In this study, we investigated the utility of measuring auditory evoked potentials in response to paired click stimuli to assess the temporal processing function of ribbon synapses in noise-induced cochlear synaptopathy.

Materials and Methods

Twenty-two Sprague Dawley rats were used in this study, and synaptopathy was induced by narrow-band noise exposure (16 kHz with 1 kHz bandwidth, 105 dB sound pressure level for 2 h). ABRs to tone and paired click stimuli were measured before and 1, 3, 7, and 14 days after noise exposure. For histological analyses, hair cells and ribbon synapses were immunostained and the synapses quantified. The relationships among ABR peak I amplitude, number of synapses, and ABR to paired click stimuli were examined.

Results

Our results showed that ABR thresholds increase 1 day after noise exposure but fully recover to baseline levels after 14 days. Further, we demonstrated test frequency-dependent decreases in peak I amplitude and the number of synapses after noise exposure. These decreases were statistically significant at frequencies of 16 and 32 kHz. However, the ABR recovery threshold to paired click stimuli increased, which represent deterioration in the ability of temporal auditory processing. Our results indicate that the ABR recovery threshold is highly correlated with ABR peak I amplitude after noise exposure. We also established a direct correlation between the ABR recovery threshold and histological findings.

Conclusion

The result from this study suggests that in animal studies, the ABR to paired click stimuli along with peak I amplitude has potential as an assessment tool for hidden hearing loss.
Now You See One Letter, Now You See Meaningless Symbols: Perceptual and Semantic Hypnotic Suggestions Reduce Stroop Errors Through Different Neurocognitive Mechanisms
Authors: Perri Rinaldo Livio , Bianco Valentina , Facco Enrico , Di Russo Francesco
Published: January 2021

Compelling literature has suggested the possibility of adopting hypnotic suggestions to override the Stroop interference effect. However, most of these studies mainly reported behavioral data and were conducted on highly hypnotizable individuals. Thus, the question of the neural locus of the effects and their generalizability remains open. In the present study, we used the Stroop task in a within-subject design to test the neurocognitive effects of two hypnotic suggestions: the perceptual request to focus only on the central letter of the words and the semantic request to observe meaningless symbols. Behavioral results indicated that the two types of suggestions did not alter response time (RT), but both favored more accurate performance compared to the control condition. Both types of suggestions increased sensory awareness and reduced discriminative visual attention, but the perceptual request selectively engaged more executive control of the prefrontal cortex (PFC), and the semantic request selectively suppressed the temporal cortex activity devoted to graphemic analysis of the words. The present findings demonstrated that the perceptual and the semantic hypnotic suggestions reduced Stroop errors through common and specific top-down modulations of different neurocognitive processes but left the semantic activation unaltered. Finally, as we also recruited participants with a medium level of hypnotizability, the present data might be considered potentially representative of the majority of the population.
Effects of the Openness to Experience Polygenic Score on Cortical Thickness and Functional Connectivity
Authors: Ren Zhiting , Liu Cheng , Meng Jie , Liu Qiang , Shi Liang , Wu Xinran , Song Li , Qiu Jiang
Published: January 2021

Openness to experience (OTE) has relatively stable and heritable characteristics. Previous studies have used candidate gene approaches to explore the genetic mechanisms of OTE, but genome-wide polygenic scores have a greater genetic effect than other genetic analysis methods, and previous studies have never examined the potential effect of OTE on this cumulative effect at the level of the brain mechanism. In the present study, we aim to explore the associations between polygenic scores (PGSs) of OTE and brain structure and functions. First, the results of PGSs of OTE at seven different thresholds were calculated in a large Chinese sample (N= 586). Then, we determined the associations between PGSs of OTE and cortical thickness and functional connectivity. The results showed that PGSs of OTE was negatively correlated with the thickness of the fusiform gyrus, and PGSs of OTE were negatively associated with the functional connectivity between the left intraparietal sulcus (IPS) and the right posterior occipital lobe. These findings may suggest that the brain structure of fusiform gyrus and brain functions of IPS and posterior occipital lobe are partly regulated by OTE-related genetic factors.
Overnight Caloric Restriction Prior to Cardiac Arrest and Resuscitation Leads to Improved Survival and Neurological Outcome in a Rodent Model
Authors: Azadian Matine , Tian Guilian , Bazrafkan Afsheen , Maki Niki , Rafi Masih , Chetty Nikole , Desai Monica , Otarola Ieeshiah , Aguirre Francisco , Zaher Shuhab M. , Khan Ashar , Suri Yusuf , Wang Minwei , Lopour Beth A. , Steward Oswald , Akbari Yama
Published: January 2021

While interest toward caloric restriction (CR) in various models of brain injury has increased in recent decades, studies have predominantly focused on the benefits of chronic or intermittent CR. The effects of ultra-short, including overnight, CR on acute ischemic brain injury are not well studied. Here, we show that overnight caloric restriction (75% over 14 h) prior to asphyxial cardiac arrest and resuscitation (CA) improves survival and neurological recovery as measured by, behavioral testing on neurological deficit scores, faster recovery of quantitative electroencephalography (EEG) burst suppression ratio, and complete prevention of neurodegeneration in multiple regions of the brain. We also show that overnight CR normalizes stress-induced hyperglycemia, while significantly decreasing insulin and glucagon production and increasing corticosterone and ketone body production. The benefits seen with ultra-short CR appear independent of Sirtuin 1 (SIRT-1) and brain-derived neurotrophic factor (BDNF) expression, which have been strongly linked to neuroprotective benefits seen in chronic CR. Mechanisms underlying neuroprotective effects remain to be defined, and may reveal targets for providing protection pre-CA or therapeutic interventions post-CA. These findings are also of high importance to basic sciences research as we demonstrate that minor, often-overlooked alterations to pre-experimental dietary procedures can significantly affect results, and by extension, research homogeneity and reproducibility, especially in acute ischemic brain injury models.
From BIDS-Formatted EEG Data to Sensor-Space Group Results: A Fully Reproducible Workflow With EEGLAB and LIMO EEG
Authors: Pernet Cyril R. , Martinez-Cancino Ramon , Truong Dung , Makeig Scott , Delorme Arnaud
Published: January 2021

Reproducibility is a cornerstone of scientific communication without which one cannot build upon each other’s work. Because modern human brain imaging relies on many integrated steps with a variety of possible algorithms, it has, however, become impossible to report every detail of a data processing workflow. In response to this analytical complexity, community recommendations are to share data analysis pipelines (scripts that implement workflows). Here we show that this can easily be done using EEGLAB and tools built around it. BIDS tools allow importing all the necessary information and create a study from electroencephalography (EEG)-Brain Imaging Data Structure compliant data. From there preprocessing can be carried out in only a few steps using EEGLAB and statistical analyses performed using the LIMO EEG plug-in. Using Wakeman and Henson (2015) face dataset, we illustrate how to prepare data and build different statistical models, a standard factorial design (faces ∗ repetition), and a more modern trial-based regression approach for the stimulus repetition effect, all in a few reproducible command lines.
Late Side Effects in Normal Mouse Brain Tissue After Proton Irradiation
Authors: Suckert Theresa , Beyreuther Elke , Müller Johannes , Azadegan Behnam , Meinhardt Matthias , Raschke Felix , Bodenstein Elisabeth , von Neubeck Cläre , Lühr Armin , Krause Mechthild , Dietrich Antje
Published: January 2021

Radiation-induced late side effects such as cognitive decline and normal tissue complications can severely affect quality of life and outcome in long-term survivors of brain tumors. Proton therapy offers a favorable depth-dose deposition with the potential to spare tumor-surrounding normal tissue, thus potentially reducing such side effects. In this study, we describe a preclinical model to reveal underlying biological mechanisms caused by precise high-dose proton irradiation of a brain subvolume. We studied the dose- and time-dependent radiation response of mouse brain tissue, using a high-precision image-guided proton irradiation setup for small animals established at the University Proton Therapy Dresden (UPTD). The right hippocampal area of ten C57BL/6 and ten C3H/He mice was irradiated. Both strains contained four groups (nirradiated = 3, ncontrol = 1) treated with increasing doses (0 Gy, 45 Gy, 65 Gy or 85 Gy and 0 Gy, 40 Gy, 60 Gy or 80 Gy, respectively). Follow-up examinations were performed for up to six months, including longitudinal monitoring of general health status and regular contrast-enhanced magnetic resonance imaging (MRI) of mouse brains. These findings were related to comprehensive histological analysis. In all mice of the highest dose group, first symptoms of blood-brain barrier (BBB) damage appeared one week after irradiation, while a dose-dependent delay in onset was observed for lower doses. MRI contrast agent leakage occurred in the irradiated brain areas and was progressive in the higher dose groups. Mouse health status and survival corresponded to the extent of contrast agent leakage. Histological analysis revealed tissue changes such as vessel abnormalities, gliosis, and granule cell dispersion, which also partly affected the non-irradiated contralateral hippocampus in the higher dose groups. All observed effects depended strongly on the prescribed radiation dose and the outcome, i.e. survival, image changes, and tissue alterations, were very consistent within an experimental dose cohort. The derived dose–response model will determine endpoint-specific dose levels for future experiments and may support generating clinical hypotheses on brain toxicity after proton therapy.
Immunohistochemical Signature Add Prognostic Value in Patients With Early and Intermediate Hepatocellular Carcinoma Underwent Curative Liver Resection
Authors: Bai Yannan , Lian Yuane , Chen Xiaoping , Wu Jiayi , Lai Jianlin , Qiu Funan , Zhou Songqiang , Zhu Zijing , Tian Yifeng , Wang Yaodong , Yang Yinghong , Yan Maolin
Published: January 2021

Hepatocellular carcinoma (HCC) is the third most lethal cancer worldwide; however, accurate prognostic tools are still lacking. We aimed to identify immunohistochemistry (IHC)-based signature as a prognostic classifier to predict recurrence and survival in patients with HCC at Barcelona Clinic Liver Cancer (BCLC) early- and immediate-stage. In total, 567 patients who underwent curative liver resection at two independent centers were enrolled. The least absolute shrinkage and selection operator regression model was used to identify significant IHC features, and penalized Cox regression was used to further narrow down the features in the training cohort (n = 201). The candidate IHC features were validated in internal (n = 101) and external validation cohorts (n = 265). Three IHC features, hepatocyte paraffin antigen 1, CD34, and Ki-67, were identified as candidate predictors for recurrence-free survival (RFS), and were used to categorize patients into low- and high-risk recurrence groups in the training cohort (P < 0.001). The discriminative performance of the 3-IHC_based classifier was validated using internal and external cohorts (P < 0.001). Furthermore, we developed a 3-IHC_based nomogram integrating the BCLC stage, microvascular invasion, and 3-IHC_based classifier to predict 2- and 5-year RFS in the training cohort; this nomogram exhibited acceptable area under the curve values for the training, internal validation, and external validation cohorts (2-year: 0.817, 0.787, and 0.810; 5-year: 0.726, 0.662, and 0.715; respectively). The newly developed 3-IHC_based classifier can effectively predict recurrence and survival in patients with early- and intermediate-stage HCC after curative liver resection.
Whole-Body Vibration Exercise in Different Postures on Handgrip Strength in Healthy Women: A Cross-Over Study
Authors: Santos Luciana M. M. , Oliveira Ana Carolina C. , Fonseca Sueli F. , Silva Angélica F. , Santos Joyce N. V. , Souza Ana Lúcia C. , Santos Jousielle M. , Ribeiro Vanessa G. C. , Arrieiro Arthur N. , Prates Ana Caroline N. , Soares Luana A. , Figueiredo Pedro Henrique S. , Martins Fábio , Lima Vanessa P. , Fernandes José Sebastião C. , Bernardo-Filho Mário , Taiar Redha , Borges Daniel T. , Sartorio Alessandro , Costa Henrique S. , Leite Hércules R. , Mendonça Vanessa A. , Lacerda Ana Cristina R.
Published: January 2021

Objective

To compare the effect of Whole-Body Vibration Exercise (WBVE) applied in push-up modified and half-squat positions, on handgrip strength (HS) and on the electromyography registry (EMGrms) of the flexor digitorum superficialis muscle (FDSM) of the dominant hand.

Methods

Nineteen healthy women (age 23.40 ± 4.03 years, bodyweight: 58.89 ± 9.87 kg), performed in a randomized order five different tests: (S1) Control; (S2) Push-up modified; (S3) Push-up placebo; (S4); Half-squatting; (S5) Half-squatting placebo. The HS and the EMGrms were assessed at baseline and immediately after the tests. ANOVA two-way design mixed test, with Tukey post hoc, was used to evaluate the HS, EMGrms and the ratio between EMGrms and HS, i.e., neural ratio (NR). Thus, the lower NR represents the greater neuromuscular modifications. The statistical significance level was set up at p < 0.05.

Results

WBVE on S2 increased HS compared to the stimulus applied to the S4 (p = 0.0001). The increase in HS was associated with a reduction in the EMGrms of the FDSM (p < 0.001) and a lower NR (p < 0.0001), i.e., greater neuromuscular modifications, in the S2 compared to the S4 after the tests.

Conclusion

The distance of the stimulus and the positioning on the vibratory platform influence the maximum muscular strength due to neuromuscular modifications of hands in healthy women.
Interlimb Coordination: A New Order Parameter and a Marker of Fatigue During Quasi-Isometric Exercise?
Authors: Vázquez Pablo , Petelczyc Monika , Hristovski Robert , Balagué Natàlia
Published: January 2021

Although exercise-induced fatigue has been mostly studied from a reductionist and component-dominant approach, some authors have started to test the general predictions of theories of self-organized change during exercises performed until exhaustion. However, little is known about the effects of fatigue on interlimb coordination in quasi-isometric actions. The aim of this study was to investigate the effect of exercise-induced fatigue on upper interlimb coordination during a quasi-isometric exercise performed until exhaustion. In order to do this, we hypothesized an order parameter that governs the interlimb coordination as an interlimb correlation measure. In line with general predictions of theory of phase transitions, we expected that the locally averaged values of the order parameter will increase as the fatigue driven system approaches the point of spontaneous task disengagement. Seven participants performed a quasi-isometric task holding an Olympic bar maintaining an initial elbow flexion of 90 degrees until fatigue induced spontaneous task disengagement. The variability of the elbow angle was recorded through electrogoniometry and the obtained time series were divided into three segments for further analysis. Running correlation function (RCF) and adopted bivariate phase rectified signal averaging (BPRSA) were applied to the corresponding initial (30%) and last (30%) segments of the time series. The results of both analyses showed that the interlimb correlation increased between the initial and the final segments of the performed task. Hence, the hypothesis of the research was supported by evidence. The enhancement of the correlation in the last part means a less flexible coordination among limbs. Our results also show that the high magnitude correlation (%RCF > 0.8) and the %Range (END-BEG) may prove to be useful markers to detect the effects of effort accumulation on interlimb coordination. These results may provide information about the loss of adaptability during exercises performed until exhaustion. Finally, we briefly discuss the hypothesis of the inhibitory percolation process being the general explanation of the spontaneous task disengagement phenomenon.
UPLC-ESI-MRM/MS for Absolute Quantification and MS/MS Structural Elucidation of Six Specialized Pyranonaphthoquinone Metabolites From Ventilago harmandiana
Authors: Limjiasahapong Suphitcha , Kaewnarin Khwanta , Jariyasopit Narumol , Hongthong Sakchai , Nuntasaen Narong , Robinson Jonathan L. , Nookaew Intawat , Sirivatanauksorn Yongyut , Kuhakarn Chutima , Reutrakul Vichai , Khoomrung Sakda
Published: January 2021

Pyranonaphthoquinones (PNQs) are important structural scaffolds found in numerous natural products. Research interest in these specialized metabolites lies in their natural occurrence and therapeutic activities. Nonetheless, research progress has thus far been hindered by the lack of analytical standards and analytical methods for both qualitative and quantitative analysis. We report here that various parts of Ventilago harmandiana are rich sources of PNQs. We developed an ultraperformance liquid chromatography–electrospray ionization multiple reaction monitoring/mass spectrometry method to quantitatively determine six PNQs from leaves, root, bark, wood, and heartwood. The addition of standards in combination with a stable isotope of salicylic acid-D6 was used to overcome the matrix effect with average recovery of 82% ± 1% (n = 15). The highest concentration of the total PNQs was found in the root (11,902 μg/g dry weight), whereas the lowest concentration was found in the leaves (28 μg/g dry weight). Except for the root, PNQ-332 was found to be the major compound in all parts of V. harmandiana, accounting for ∼48% of the total PNQs quantified in this study. However, PNQ-318A was the most abundant PNQ in the root sample, accounting for 27% of the total PNQs. Finally, we provide novel MS/MS spectra of the PNQs at different collision induction energies: 10, 20, and 40 eV (POS and NEG). For structural elucidation purposes, we propose complete MS/MS fragmentation pathways of PNQs using MS/MS spectra at collision energies of 20 and 40 eV. The MS/MS spectra along with our discussion on structural elucidation of these PNQs should be very useful to the natural products community to further exploring PNQs in V. harmandiana and various other sources.
Cultural Differences in Mixed Emotions: The Role of Dialectical Thinking
Authors: Zheng Wen , Yu Ailin , Li Disi , Fang Ping , Peng Kaiping
Published: January 2021

Who can feel both happy and sad at the same time, but not discomfort? This study aimed to investigate the cultural differences in mixed emotional experiences induced by conflict stimuli among American and Chinese undergraduate students. In total, 160 Americans and 158 Chinese watched two different valence advertisements (one predominantly positive and the other predominantly negative) that elicited mixed emotions; their feelings were assessed through self-reported measures. Findings indicated the impact that cultural differences have in people’s mixed emotional experiences depends on the emotional components of the mixed emotional situations. The Americans and Chinese both experience a comparably intense mixture of emotions in different valence situations, but their discomfort toward conflicting stimuli is different. Further, dialectical thinking may be a mechanism behind the influence of cultural differences in people’s mixed emotional experiences. Implications for emotion theory and research are discussed.
The Effects of Extra-Team Goal Disclosure on Team Performance, Viability, and Satisfaction
Authors: Sackett Esther , Fitzsimons Gráinne M.
Published: January 2021

In addition to the team’s shared goals, team members also often hold goals unrelated to the team. Research about such goals, which we call “extra-team goals” (ETGs), has been limited. In the current research, we examine how awareness of a team member’s ETGs affects team outcomes. A laboratory experiment examines the effects of disclosure of different types of ETGs by one team member (target) on team performance, team viability, and team satisfaction while engaging in a brainstorming task. Our findings suggest that there are significant positive effects of ETG disclosure on team performance, team viability, and team satisfaction, and that these effects are mediated by perceptions of the target’s commitment to the team’s goal.
Goals and Self-Efficacy Beliefs During the Initial COVID-19 Lockdown: A Mixed Methods Analysis
Authors: Ritchie Laura , Cervone Daniel , Sharpe Benjamin T.
Published: January 2021

This study aimed to capture how the coronavirus disease 2019 (COVID-19) crisis disrupted and affected individuals’ goal pursuits and self-efficacy beliefs early during the lockdown phase of COVID-19. Participants impacted by lockdown regulations accessed an online questionnaire during a 10-day window from the end of March to early April 2020 and reported a significant personal goal toward which they had been working, and then completed quantitative and qualitative survey items tapping self-efficacy beliefs for goal achievement, subjective caring about the goal during disrupted world events, and current pursuit or abandonment of the goal. The findings from both quantitative and qualitative measures demonstrated a significant drop in self-efficacy beliefs from before to during the pandemic with a large effect based on whether people thought they could still achieve their goal under current conditions. Over two-thirds of the sample was unsure or did not believe they could still carry out their goal, and over a quarter either abandoned or were uncertain they could pursue the goal. Despite this, people continued to care about their goals. Reasons for abandonment and strategies for coping with goals within the lockdown and beyond are discussed.