bluuebunny/crossref_metadata_2025 huggingface dataset:
A Gas Chromatography Mass Spectrometry-Based Method for the Quantification of Short Chain Fatty Acids
Authors: Rohde Julia K. , Fuh Marceline M. , Evangelakos Ioannis , Pauly Mira J. , Schaltenberg Nicola , Siracusa Francesco , Gagliani Nicola , Tödter Klaus , Heeren Joerg , Worthmann Anna
Published: February 2022

Short Chain Fatty Acids (SCFAs) are produced by the gut microbiota and are present in varying concentrations in the intestinal lumen, in feces but also in the circulatory system. By interacting with different cell types in the body, they have a great impact on host metabolism and their exact quantification is indispensable. Here, we present a derivatization-free method for the gas chromatography mass spectrometry (GC-MS) based quantification of SCFAs in plasma, feces, cecum, liver and adipose tissue. SCFAs were extracted using ethanol and concentrated by alkaline vacuum centrifugation. To allow volatility for separation by GC, samples were acidified with succinic acid. Analytes were detected in selected ion monitoring (SIM) mode and quantified using deuterated internal standards and external calibration curves. Method validation rendered excellent linearity (R2 > 0.99 for most analytes), good recovery rates (95–117%), and good reproducibility (RSD: 1–4.5%). Matrix effects were ruled out in plasma, feces, cecum, liver and fat tissues where most abundant SCFAs were detected and accurately quantified. Finally, applicability of the method was assessed using samples derived from conventionally raised versus germ-free mice or mice treated with antibiotics. Altogether, a reliable, fast, derivatization-free GC-MS method for the quantification of SCFAs in different biological matrices was developed allowing for the study of the (patho)physiological role of SCFAs in metabolic health.
Cordyceps militaris as a Bio Functional Food Source: Pharmacological Potential, Anti-Inflammatory Actions and Related Molecular Mechanisms
Authors: Phull Abdul-Rehman , Ahmed Madiha , Park Hye-Jin
Published: February 2022

Cordyceps militaris (C. militaris) is a medicinal mushroom possessing a variety of biofunctionalities. It has several biologically important components such as polysaccharides and others. The diverse pharmacological potential of C. militaris has generated interest in reviewing the current scientific literature, with a particular focus on prevention and associated molecular mechanisms in inflammatory diseases. Due to rising global demand, research on C. militaris has continued to increase in recent years. C. militaris has shown the potential for inhibiting inflammation-related events, both in in vivo and in vitro experiments. Inflammation is a multifaceted biological process that contributes to the development and severity of diseases, including cancer, colitis, and allergies. These functions make C. militaris a suitable functional food for inhibiting inflammatory responses such as the regulation of proinflammatory cytokines. Therefore, on the basis of existing information, the current study provides insights towards the understanding of anti-inflammatory activity-related mechanisms. This article presents a foundation for clinical use, and analyzes the roadmap for future studies concerning the medical use of C. militaris and its constituents in the next generation of anti-inflammatory drugs.
Limited Reliability of the Molecular Detection of Plasmodium spp. from Incubated Blood Culture Samples for Forensic Purposes
Authors: Weinreich Felix , Hagen Ralf Matthias , Loag Wibke , Maïga-Ascofaré Oumou , Dekker Denise , Frickmann Hagen , Loderstädt Ulrike
Published: February 2022

The suitability of incubated blood culture material for forensic molecular malaria diagnosis was assessed for non-endemic settings for cases in which the differential diagnosis malaria was initially overlooked. For the proof-of-principle assessment, residual blood culture materials from febrile patients from tropical Ghana were investigated by real-time PCR and compared with available historic microscopic results. In 2114 samples, for which microscopical results and real-time PCR results were available, microscopical results comprised 711 P. falciparum detections, 7 P. malariae detections, 1 microscopically not-further-discriminable Plasmodium spp. detection as well as 13 detections of mixed infections comprising 12 cases of P. falciparum/P. malariae co-infections and 1 case of a P. falciparum/P. ovale complex co-infection, while real-PCR indicated 558 P. falciparum detections, 95 P. malariae detections, 10 P. ovale complex detections, 1 P. vivax detection and 4 detected P. falciparum/P. malariae co-infections. Concordance of routine microscopy and real-time PCR was imperfect. Using routine microscopy as reference was associated with a seemingly low agreement of positive real-time PCR results of 90.9%. However, if positive samples, either by routine microscopy or real-time PCR or both, were applied as a combined reference, the agreement of positive results obtained with real-time PCR was increased from 74.0% to 77.9%, while the agreement of positive results obtained with routine microscopy was decreased from 100% to 85.3%. The predictive value of routine microscopy for negative results in the reference was slightly better with 90.9% compared to real-time PCR with 86.9%; the concordance between routine microscopy and real-time PCR was imperfect. In conclusion, even suboptimal sample materials such as incubated blood culture materials can be applied for forensic malaria diagnosis, if more suitable sample materials are not available, but the molecular detection rate of positive results in routine microscopy is much lower than previously reported for non-incubated blood.
Three-Week Old Pigs Are Not Susceptible to Productive Infection with SARS-COV-2
Authors: Haddock Elaine , Callison Julie , Seifert Stephanie N. , Okumura Atsushi , Tang-Huau Tsing-Lee , Leventhal Shanna S. , Lewis Matthew C. , Lovaglio Jamie , Hanley Patrick W. , Shaia Carl , Hawman David W. , Munster Vincent J. , Jarvis Michael A. , Richt Juergen A. , Feldmann Heinz
Published: February 2022

As the COVID-19 pandemic moves into its third year, there remains a need for additional animal models better recapitulating severe COVID to study SARS-CoV-2 pathogenesis and develop countermeasures, especially treatment options. Pigs are known intermediate hosts for many viruses with zoonotic potential and are susceptible to infection with alpha, beta and delta genera of coronaviruses. Herein, we infected young (3 weeks of age) pigs with SARS-CoV-2 using a combination of respiratory and parenteral inoculation routes. Pigs did not develop clinical disease, nor macroscopic or microscopic pathologic lesions upon SARS-CoV-2 infection. Despite occasional low levels of SARS-CoV-2 genomic RNA in the respiratory tract, subgenomic RNA and infectious virus were never found, and SARS-CoV-2-specific adaptive immune responses were not detectable over the 13-day study period. We concluded that pigs are not susceptible to productive SARS-CoV-2 infection and do not serve as a SARS-CoV-2 reservoir for zoonotic transmission.
Preparation and Immune Effect of HEV ORF2 P206@PLGA Nanoparticles
Authors: Yang Yifei , Sun Zhenning , Li Huopeng , Tian Jijing , Chen Mingyong , Liu Tianlong
Published: February 2022

The hepatitis E virus (HEV) is an important pathogen that threatens global public health. One-third of the world’s population lives in the epidemic area of HEV, causing 20 million infections and 70,000 deaths annually. In China, HEV transmission has changed from human-to-human transmission of HEV1 to zoonotic transmission of HEV4, causing hepatitis outbreaks throughout the country. Protecting vulnerable groups, such as practitioners related to animal husbandry and downstream consumers who are immune deficient or pregnant, from HEV infections is an urgent task. At present, the commercial human vaccine, Hecolin® (HEV 239 vaccine), is licensed for use only in China. HEV 239 vaccine is a human vaccine developed for HEV1. Although it has a cross-protective effect on HEV4, the level of immune protection is still different. To address the transformation of domestic HEV transmission modes, there is an urgent need to develop a new vaccine against zoonotic HEV4. P206@PLGA is a vaccine candidate in which nanomaterials are used to encapsulate viral capsid proteins for the immunization of livestock animals. Our experiments show that P206@PLGA has excellent biocompatibility and safety. In addition, P206@PLGA can effectively induce animals to produce a high titer of antibodies against HEV4, and thus has the potential to become a veterinary vaccine for the prevention of HEV. This approach provides a new concept for HE prevention to reduce the transmission of HEV in farms and protect susceptible populations.
Quantifying Emission Factors and Setting Conditions of Use According to ECHA Chapter R.14 for a Spray Process Designed for Nanocoatings—A Case Study
Authors: Koivisto Antti Joonas , Del Secco Benedetta , Trabucco Sara , Nicosia Alessia , Ravegnani Fabrizio , Altin Marko , Cabellos Joan , Furxhi Irini , Blosi Magda , Costa Anna , Lopez de Ipiña Jesús , Belosi Franco
Published: February 2022

Spray coatings’ emissions impact to the environmental and occupational exposure were studied in a pilot-plant. Concentrations were measured inside the spray chamber and at the work room in Near-Field (NF) and Far-Field (FF) and mass flows were analyzed using a mechanistic model. The coating was performed in a ventilated chamber by spraying titanium dioxide doped with nitrogen (TiO2N) and silver capped by hydroxyethylcellulose (Ag-HEC) nanoparticles (NPs). Process emission rates to workplace, air, and outdoor air were characterized according to process parameters, which were used to assess emission factors. Full-scale production exposure potential was estimated under reasonable worst-case (RWC) conditions. The measured TiO2-N and Ag-HEC concentrations were 40.9 TiO2-μg/m3 and 0.4 Ag-μg/m3 at NF (total fraction). Under simulated RWC conditions with precautionary emission rate estimates, the worker’s 95th percentile 8-h exposure was ≤171 TiO2 and ≤1.9 Ag-μg/m3 (total fraction). Environmental emissions via local ventilation (LEV) exhaust were ca. 35 and 140 mg-NP/g-NP, for TiO2-N and Ag-HEC, respectively. Under current situation, the exposure was adequately controlled. However, under full scale production with continuous process workers exposure should be evaluated with personal sampling if recommended occupational exposure levels for nanosized TiO2 and Ag are followed for risk management.
Virtual Vibrational Spectrometry of Stable Radicals—Necklaced Graphene Molecules
Authors: Sheka Elena F.
Published: February 2022

The article presents results of an extended virtual experiment on graphene molecules performed using the virtual vibrational spectrometer HF Spectrodyn that exploits semiempirical Hartree–Fock approximation. The molecules are composed of flat graphene domains surrounded with heteroatom necklaces. Not existing individually, these molecules are met in practice as basic structure units of complex multilevel structure of all sp2 amorphous carbons. This circumstance deprives the solids’ in vitro spectroscopy of revealing the individual character of basic structural elements, and in silico spectrometry fills this shortcoming. The obtained virtual vibrational spectra allow for drawing first conclusions about the specific features of the vibrational dynamics of the necklaced graphene molecules, caused by spatial structure and packing of their graphene domains as well as by chemical composition of the relevant necklaces. As shown, IR absorption spectra of the molecules are strongly necklace dependent, once becoming a distinct spectral signature of the amorphous body origin. Otherwise, Raman spectra are a spectral mark of the graphene domain’s size and packing, thus disclosing the mystery of their universal D-G-band standard related to graphene-containing materials of various origins.
An Analysis for Variable Physical Properties Involved in the Nano-Biofilm Transportation of Sutterby Fluid across Shrinking/Stretching Surface
Authors: Abdal Sohaib , Siddique Imran , Afzal Saima , Sharifi Somayeh , Salimi Mehdi , Ahmadian Ali
Published: February 2022

In this article, we explore how activation energy and varied transit parameters influence the two-dimensional stagnation point motion of nano-biofilm of Sutterby fluids incorporating gyrotactic microbes across a porous straining/shrinking sheet. Prior investigations implied that fluid viscosity as well as thermal conductance are temperature based. This research proposes that fluid viscosity, heat capacity and nanofluid attributes are all modified by solute concentration. According to some empirical research, the viscosity as well as heat conductivity of nanoparticles are highly based on the concentration of nanoparticles instead of only the temperature. The shooting approach with the RK-4 technique is applied to acquire analytical results. We contrast our outcomes with those in the existing research and examine their consistency and reliability. The graphic performance of relevant factors on heat, velocity, density and motile concentration domains are depicted and discussed. The skin friction factor, Nusselt number, Sherwood number and the motile density are determined. As the concentration-dependent properties are updated, the speed, temperature, concentration and motile density profiles are enhanced, but for all concentration-varying factors, other physical quantities deteriorate.
Graphene Oxide/Silver Nanoparticles Platforms for the Detection and Discrimination of Native and Fibrillar Lysozyme: A Combined QCM and SERS Approach
Authors: Tramonti Vania , Lofrumento Cristiana , Martina Maria Raffaella , Lucchesi Giacomo , Caminati Gabriella
Published: February 2022

We propose a sensing platform based on graphene oxide/silver nanoparticles arrays (GO/AgNPs) for the detection and discrimination of the native and toxic fibrillar forms of an amyloid-prone protein, lysozyme, by means of a combination of Quartz Crystal Microbalance (QCM) and Surface Enhanced Raman Scattering (SERS) measurements. The GO/AgNPs layer system was obtained by Langmuir-Blodgett assembly of the silver nanoparticles followed by controlled adsorption of GO sheets on the AgNPs array. The adsorption of native and fibrillar lysozyme was followed by means of QCM, the measurements provided the kinetics and the mechanism of adsorption as a function of protein concentration as well as the mass and thickness of the adsorbed protein on both nanoplatforms. The morphology of the protein layer was characterized by Confocal Laser Scanning Microscopy experiments on Thioflavine T-stained samples. SERS experiments performed on arrays of bare AgNPs and of GO coated AgNP after native, or fibrillar, lysozyme adsorption allowed for the discrimination of the native form and toxic fibrillar structure of lysozyme. Results from combined QCM/SERS studies indicate a general construction paradigm for an efficient sensing platform with high selectivity and low detection limit for native and amyloid lysozyme.
Lightly Boron-Doped Nanodiamonds for Quantum Sensing Applications
Authors: Alkahtani Masfer , Zharkov Dmitrii K. , Leontyev Andrey V. , Shmelev Artemi G. , Nikiforov Victor G. , Hemmer Philip R.
Published: February 2022

Unlike standard nanodiamonds (NDs), boron-doped nanodiamonds (BNDs) have shown great potential in heating a local environment, such as tumor cells, when excited with NIR lasers (808 nm). This advantage makes BNDs of special interest for hyperthermia and thermoablation therapy. In this study, we demonstrate that the negatively charged color center (NV) in lightly boron-doped nanodiamonds (BNDs) can optically sense small temperature changes when heated with an 800 nm laser even though the correct charge state of the NV is not expected to be as stable in a boron-doped diamond. The reported BNDs can sense temperature changes over the biological temperature range with a sensitivity reaching 250 mK/√Hz. These results suggest that BNDs are promising dual-function bio-probes in hyperthermia or thermoablation therapy as well as other quantum sensing applications, including magnetic sensing.
Editorial for “Properties and Applications of Graphene and Its Derivatives”
Authors: González-Domínguez Jose M.
Published: February 2022

Since the very first landmark report by Geim and Novoselov in 2004 on graphene [...]
Acknowledgment to Reviewers of Network in 2021
Authors:   Network Editorial Office
Published: February 2022

Rigorous peer-reviews are the basis of high-quality academic publishing [...]
Escherichia coli Strains Responsible for Cystitis in Female Pediatric Patients with Normal and Abnormal Urinary Tracts Have Different Virulence Profiles
Authors: Domingos Marta , da Silva Junior Silvio , Milanello Wagner , Nakano Shirley , Franzolin Marcia , dos Santos Luis , Nunes Kamila , Marques Vaniky , Elias Waldir , Silva Herbert , Caetano Bruna , Piazza Roxane
Published: February 2022

The role of uropathogenic Escherichia coli (UPEC) in colonization and infection of female patients with anatomical and functional abnormalities of the urinary system is elusive. In this study, the phenotype, genotype and the phylogeny of UPEC strains isolated from the urine of pediatric female patients with cystitis of normal and abnormal urinary tract were determined. Multiplex PCR results demonstrated that 86% of the strains isolated from female patients with normal urinary tract (NUT), belonged to the phylo-groups B2 and D. Their prevalence decreased to 23% in strains isolated from patients with abnormal urinary tract (AUT). More of the isolates from AUT patients produced a biofilm on polystyrene and polyvinyl chloride (PVC), adhered to epithelial cells, and encoded pap and sfa genes than strains isolated from female patients with NUT. In contrast, a higher number of hemolysin-producing strains with serogroups associated with UPEC were isolated from patients with NUT. In summary, the results suggest that cystitis in female patients with NUT is associated with ExPEC, whereas cystitis in female patients with AUT is associated with pathogenic intestinal E. coli strains that have acquired the ability to colonize the bladder.
Enhanced Seroconversion to West Nile Virus Proteins in Mice by West Nile Kunjin Replicon Virus-like Particles Expressing Glycoproteins from Crimean–Congo Hemorrhagic Fever Virus
Authors: Tran Pham-Tue-Hung , Höglund Urban , Larsson Olivia , Appelberg Sofia , Mirazimi Ali , Johansson Magnus , Melik Wessam
Published: February 2022

Removal of genes coding for major parts of capsid (C), premembrane (prM), and envelope (E) proteins on the flavivirus genome aborts the production of infectious virus particles where the remaining genome forms a replicon that retains replicability in host cells. The C-prM-E proteins can also be expressed in trans with the flavivirus replicons to generate single-round infectious replicon virus-like particles (RVPs). In this study, we characterized the use of RVPs based on the Kunjin strain of WNV (WNVKUN) as a putative WNV vaccine candidate. In addition, the WNVKUN C-prM-E genes were substituted with the Crimean–Congo hemorrhagic fever virus (CCHFV) genes encoding the glycoproteins Gn and Gc to generate a WNVKUN replicon expressing the CCHFV proteins. To generate RVPs, the WNVKUN replicon was transfected into a cell line expressing the WNVKUN C-prM-E. Using immunoblotting and immunofluorescence assays, we showed that the replicon can express the CCHFV Gn and Gc proteins and the RVPs can transduce cells to express WNVKUN proteins and the CCHFV Gn and Gc proteins. Our study also revealed that these RVPs have potential as a vaccine platform with low risk of recombination as it infects cells only in one cycle. The immunization of mice with the RVPs resulted in high seroconversion to both WNV E and NS1 but limited seroconversion to CCHFV Gn and Gc proteins. Interestingly, we found that there was enhanced production of WNV E, NS1 antibodies, and neutralizing antibodies by the inclusion of CCHFV Gc and Gn into WNVKUN RVPs. Thus, this study indicates a complementary effect of the CCHFV Gn and Gc proteins on the immunogenicity by WNVKUN RVPs, which may be applied to develop a future vaccine against the WNV.
Fecal Microbiota Analysis in Cats with Intestinal Dysbiosis of Varying Severity
Authors: Bugrov Nikolay , Rudenko Pavel , Lutsay Vladimir , Gurina Regina , Zharov Andrey , Khairova Nadiya , Molchanova Maria , Krotova Elena , Shopinskaya Marina , Bolshakova Marina , Popova Irina
Published: February 2022

Recent studies have shown that the gut microbiota plays an important role in the pathogenesis of gastrointestinal diseases in various animal species. There are only limited data on the microbiome in cats with varying grades of dysbiosis. The purpose of the study was a detailed analysis of the quantitative and qualitative fecal microbiota spectrum in cats with intestinal dysbiosis of varying severity. The data obtained indicate that, depending on the dysbiosis severity in cats, the intestinal microbiome landscape changes significantly. It has been established that, depending on the dysbiosis severity, there is a shift in the balance between the Gram-positive and Gram-negative bacterial pools and in the nature of the isolation of specific bacteria forms, in the amount of obligate microbiota isolation, as well as individual facultative strains. When analyzing the serotyping of E. coli cultures isolated at various grades of intestinal dysbiosis severity, differences were found both in the isolation amount of various serotypes from one animal and in the prevalence of certain serotypes for each disease severity. A retrospective analysis of the fecal microbiota sensitivity in cats with dysbiosis to antibacterial drugs showed that, depending on the disease severity, the number of isolates sensitive to antibiotics increases significantly.
Experimental and Numerical Study of Locking of Low-Frequency Fluctuations of a Semiconductor Laser with Optical Feedback
Authors: Tiana-Alsina Jordi , Masoller Cristina
Published: February 2022

We study the output of a semiconductor laser with optical feedback operated in the low-frequency fluctuations (LFFs) regime and subject to weak sinusoidal current modulation. In the LFF regime, the laser intensity exhibits abrupt drops, after which it recovers gradually. Without modulation, the drops occur at irregular times, while, with weak modulation, they can lock to the external modulation and they can occur, depending on the parameters, every two or every three modulation cycles. Here, we characterize experimentally the locking regions and use the well-known Lang–Kobayashi model to simulate the intensity dynamics. We analyze the effects of several parameters and find that the simulations are in good qualitative agreement with the experimental observations.
Effect of Phytoplasma Associated with Sesame Phyllody on Ultrastructural Modification, Physio-Biochemical Traits, Productivity and Oil Quality
Authors: Ahmed Eman A. , Farrag Amro A. , Kheder Ahmed A. , Shaaban Ahmed
Published: February 2022

Phytoplasmas are obligate cell-wall-less plant pathogenic bacteria that infect many economically important crops, causing considerable yield losses worldwide. Very little information is known about phytoplasma–host plant interaction mechanisms and their influence on sesame yield and oil quality. Therefore, our aim was to explore the ultrastructural and agro-physio-biochemical responses of sesame plants and their effects on sesame productivity and oil quality in response to phytoplasma infection. Sesame leaf samples exhibiting phyllody symptoms were collected from three experimental fields during the 2021 growing season. Phytoplasma was successfully detected by nested- polymerase chain reaction (PCR) assays using the universal primer pairs P1/P7 and R16F2n/R16R2, and the product of approximately 1200 bp was amplified. The amplified product of 16S rRNA was sequenced and compared with other available phytoplasma’s 16S rRNA in the GenBank database. Phylogenetic analysis revealed that our Egyptian isolate under accession number MW945416 is closely related to the 16SrII group and showed close (99.7%) identity with MH011394 and L33765.1, which were isolated from Egypt and the USA, respectively. The microscopic examination of phytoplasma-infected plants revealed an observable deterioration in tissue and cell ultrastructure. The primary and secondary metabolites considerably increased in infected plants compared with healthy ones. Moreover, phytoplasma-infected plants showed drastically reduced water content, chlorophyll content, growth, and yield components, resulting in 37.9% and 42.5% reductions in seed and oil yield, respectively. The peroxide value of the infected plant’s oil was 43.2% higher than that of healthy ones, suggesting a short shelf-life. Our findings will provide a better understanding of the phyllody disease pathosystem, helping us to develop effective strategies for overcoming such diseases.
Sex Differences in Desiccation Tolerance Varies by Colony in the Mesic Liverwort Plagiochila porelloides
Authors: Silva-e-Costa Juliana da C. , Luizi-Ponzo Andrea P. , McLetchie David Nicholas
Published: February 2022

Water scarcity, a common stress factor, negatively impacts plant performance. Strategies to cope with it, such as desiccation tolerance, are becoming increasingly important to investigate. However, phenomena, such as intraspecific variation in stress responses have not received much attention. Knowledge of this variability and the environmental drivers can be leveraged to further investigate the mechanisms of desiccation tolerance. Here we tested for variation in desiccation tolerance in Plagiochila porelloides among colonies and sexes within the same riparian zone. Field-collected dehardened plants were subjected to a desiccation event, under controlled conditions and then rehydrated. Plant water status, photosynthetic rates, net carbon gain, and efficiency of photosystem II (PSII) were assayed to evaluate tissue desiccation, basic metabolic processes and plant recovery. To establish a linkage between plant response and environmental factors, field light conditions were measured. We detected intraspecific variation, where a more exposed colony (high percentage of open sky, large temporal range of light quantity, and high red/far-red ratio) showed sex differences in desiccation tolerance and recovery. Overall, PSII recovery occurred by 72 h after rehydration, with a positive carbon gain occurring by day 30. This within species variation suggests plastic or genetic effects, and likely association with light conditions.
Characteristics of the Seed Germination and Seedlings of Six Grape Varieties (V. vinifera)
Authors: Wang Zhi-Lei , Hui Miao , Shi Xue-Qing , Wu Dong , Wang Ying , Han Xing , Cao Xiao , Yao Fei , Li Hua , Wang Hua
Published: February 2022

Intraspecific recurrent selection in V. vinifera is an effective method for breeding of high quality, disease-, cold-, and drought-resistance grapes. Exploring the optimal treatment methods for grape (V. vinifera) seeds can help to accelerate the process of intraspecific recurrent selection and improve breeding efficiency. In this study, seeds of six V. vinifera varieties were used as experimental materials, and the germination and seedling formation characteristics were studied by single factor treatment and orthogonal compound treatment, respectively. To do this, stratification, chemical substances, beak cutting, and pre-germination treatments were tested, and the optimal treatment combination was determined for each variety. The results indicated that the optimal conditions obtained in the orthogonal experiments were not completely consistent with those in the single-factor experiments. Single factor experiment results demonstrated that two stratification methods (chilling gauze-storage and chilling sand-storage) and two pre-germination methods (pre-germination in petri dishes and pre-germination in a bean sprouter) vary in effectiveness for different varieties. gibberellin acid (GA3) soaking and beak-cutting promote the germination and seedling rate of the tested varieties. Orthogonal test results demonstrate that, for Dunkelfelder and Cabernet Sauvignon, the optimal treatment combination was chilling sand-storage + GA3 soaking seed + beak cutting + pre-germination in petri dishes. For Meili, the optimal treatment combination was chilling sand-storage + acetic acid (HAc) soaking seed + beak cutting + pre-germination in petri dishes. For Ecolly, the optimal treatment combination was chilling sand-storage + GA3 soaking seed + beak cutting + pre-germination in a bean sprouter. For Garanior, the optimal treatment combination was chilling sand-storage + HAc soaking seed + no beak cutting + pre-germination in petri dishes. For Marselan, the optimal treatment combination was chilling gauze-storage + GA3 soaking seed + beak cutting + pre-germination in a bean sprouter. This study identified the optimal conditions for seed germination and seedling formation of six grape varieties, which will facilitate future work to characterize the seed germination and seedling formation of seeds obtained by intraspecific hybridization of these varieties. This work also provides a reference for addressing problems of low seed germination rate and suboptimal seedling formation for better utilization of grape germplasms.
Sulfur Starvation in Extremophilic Microalga Galdieria sulphuraria: Can Glutathione Contribute to Stress Tolerance?
Authors: Salbitani Giovanna , Perrone Angela , Rosati Luigi , Laezza Carmen , Carfagna Simona
Published: February 2022

This study reports the effects of sulfur (S) deprivation in cultures of Galdieria sulphuraria (Cyanidiophyceae). Galdieria is a unicellular red alga that usually grows, forming biomats on rocks, in S-rich environments. These are volcanic areas, where S is widespread since H2S is the prevalent form of gas. The glutathione content in Galdieria sulphuraria is much higher than that found in the green algae and even under conditions of S deprivation for 7 days, it remains high. On the other hand, the S deprivation causes a decrease in the total protein content and a significant increase in soluble protein fraction. This suggests that in the conditions of S starvation, the synthesis of enzymatic proteins, that metabolically support the cell in the condition of nutritional stress, could be up regulated. Among these enzymatic proteins, those involved in cell detoxification, due to the accumulation of ROS species, have been counted.
Advances in the Molecular Cytogenetics of Bananas, Family Musaceae
Authors: Šimoníková Denisa , Čížková Jana , Zoulová Veronika , Christelová Pavla , Hřibová Eva
Published: February 2022

The banana is a staple food crop and represents an important trade commodity for millions of people living in tropical and subtropical countries. The most important edible banana clones originated from natural crosses between diploid Musa balbisiana and various subspecies of M. acuminata. It is worth mentioning that evolution and speciation in the Musaceae family were accompanied by large-scale chromosome structural changes, indicating possible reasons for lower fertility or complete sterility of these vegetatively propagated clones. Chromosomal changes, often accompanied by changes in genome size, are one of the driving forces underlying speciation in plants. They can clarify the genomic constitution of edible bananas and shed light on their origin and on diversification processes in members of the Musaceae family. This article reviews the development of molecular cytogenetic approaches, ranging from classical fluorescence in situ hybridization (FISH) using common cytogenetic markers to oligo painting FISH. We discuss differences in genome size and chromosome number across the Musaceae family in addition to the development of new chromosome-specific cytogenetic probes and their use in genome structure and comparative karyotype analysis. The impact of these methodological advances on our knowledge of Musa genome evolution at the chromosomal level is demonstrated. In addition to citing published results, we include our own new unpublished results and outline future applications of molecular cytogenetics in banana research.
Nettle Cultivation Practices—From Open Field to Modern Hydroponics: A Case Study of Specialized Metabolites
Authors: Opačić Nevena , Radman Sanja , Fabek Uher Sanja , Benko Božidar , Voća Sandra , Šic Žlabur Jana
Published: February 2022

Conventional agricultural production faces numerous challenges due to the pronounced effects of climate change, particularly global warming, and drought more than ever before in history, with the primary concern being to produce adequate yields and high-quality, nutritious plant material. Likewise, people are increasingly looking for new sources of food and are becoming aware of the importance of a varied diet and its connection to health. In this sense, stinging nettle (Urtica dioica L.) stands out as a valuable species that is neglected as a food source, as it has a significant content of specialized metabolites, and thus has an extremely high potential for use both nutritionally and pharmacologically, but is still traditionally collected from natural habitats, so it can be of questionable quality and undefined chemical composition. Therefore, sustainable agricultural practices are increasingly shifting to modern hydroponic cultivation methods in greenhouses. The advantage lies in the easier management and control of a number of factors during cultivation (air temperature and relative humidity, balanced and rational fertilization, minimization of nitrate uptake, etc.), ensuring better conditions for the growth and development of nettle according to its needs. The aim of this review is to give an overview of the technology of stinging nettle cultivation in the field and to show the possibilities of cultivation with modern hydroponic techniques to obtain a final product of consistent and uniform quality, high content of specialized metabolites and significant nutritional value. Research on this topic is still sparse but will certainly increase in the future. Therefore, this review provides all the necessary data for such future studies.
Impact of Seasonal Variation and Processing Methods on the Cassava-Derived Dietary Cyanide Poisoning, Nutritional Status, and Konzo Appearance in South-Kivu, Eastern D.R. Congo
Authors: Baguma Marius , Migabo Christiane , Nzabara Fabrice , Sami Wany Linda , Akili Christian Manegabe , Makali Lwamushi Samuel , Bisimwa Jules Mufungizi , Nkemba Aimé , Chirhalwirwa Pacifique , Maheshe Ghislain Balemba , Rigo Jean-Michel , Chabwine Joëlle Nsimire
Published: February 2022

This study aimed at evaluating the impact of seasons on the nutritional status and on dietary cassava-related cyanide exposure in Burhinyi and Idjwi, two areas in the eastern Democratic Republic of the Congo, witnessing similarly high cassava-derived cyanide poisoning but differently affected by konzo and malnutrition. Cyanide content in cassava roots and flour, and urinary thiocyanate levels (uSCN) of 54 subjects (40 from Burhinyi and 14 from Idjwi, aged 28.7 (12.1) years, 63% women) were measured during the rainy season (RS) and dry season (DS), using picrate paper kits A and D1. Local processing methods proved to be efficient in removing cyanogenic compounds in fresh cassava roots during the RS. However, the cyanide content in flour samples significantly increased during DS, with ~50% of samples containing unsafe levels (>10 ppm) of cyanide content. Strikingly, the uSCN (µmol/L), from being comparably high in RS (~172.0), slightly decreased during DS in Burhinyi (~103.2; p = 0,3547), but not in Idjwi (~172; p = 0,1113). Furthermore, serum proteins and albumin levels significantly decreased during the DS, witnessing a worsening of nutritional status, in Burhinyi but not in Idjwi. The consumption of bitter cassava roots (OR = 5.43, p = 0.0144) and skipping heap fermentation (OR = 16.67, p = 0.0021) were independently associated with very high uSCN levels during the DS. Thus, restoring the traditional processing methods, and complying with them in either season should ensure the safe consumption of cassava.
Recent Advancements in Plant-Derived Nanomaterials Research for Biomedical Applications
Authors: Trivedi Rashmi , Upadhyay Tarun Kumar , Mujahid Mohd Hasan , Khan Fahad , Pandey Pratibha , Sharangi Amit Baran , Muzammil Khursheed , Nasir Nazim , Hassan Atiq , Alabdallah Nadiyah M. , Anwar Sadaf , Siddiqui Samra , Saeed Mohd
Published: February 2022

Engineering, physics, chemistry, and biology are all involved in nanotechnology, which comprises a wide variety of multidisciplinary scientific field devices. The holistic utilization of metallic nanoparticles in the disciplines of bio-engineering and bio-medicine has attracted a great deal of attention. Medical nanotechnology research can offer immense health benefits for humans. While the advantages of developing nanomaterials have been well documented, it is precisely apparent that there are still some major issues that remain unattended to those need to be resolved immediately so as to ensure that they do not adversely affect living organisms in any manner. The existence of nanoparticles gives them particular value in biology and materials science, as an emerging scientific field, with multiple applications in science and technology, especially with numerous frontiers in the development of new materials. Presented here is a review of recent noteworthy developments regarding plant-derived nanomaterials and their use in the development of medicine and biomedical applications around the world.
Hydrodynamic and Morphodynamic Influences from Ocean Current Energy Conversion Sites in the South–Southeastern Brazilian Inner Shelf
Authors: Kirinus Eduardo de Paula , Oleinik Phelype Haron , Marques Wiliam Correa
Published: February 2022

As marine renewable resources begin to become a feasible energy source, it becomes crucial to investigate the nearshore impact of hydrodynamic and morphodynamic processes. As part of the implementation of turbines in the numerical modeling environment of Telemac-3D and Sisyphe modules, we conducted a 10-year run to evaluate nearshore impacts of turbines in the flow. We used five criteria to define viable locations. Turbines sites were added to a conversion energy model coupled into the hydrodynamic model in order to develop properly the flow changes towards the energy conversion process. The results revealed that in the three chosen spots, turbines were not converting equally the current energy within the site. In fact, the turbines located on the outer side of the farm developed greater conversion rates. This impacted the nearshore in the following ways: (1) the decrease in the currents intensity that generates strong adjustments in the water column, breaking the natural pattern of vertical circulation; (2) development of lateral flows that in time affects the bottom dynamics and results in changes in sediment deposition; and (3) increase in bedload transport rates around the turbine’s field due to divergence in the flow. The idealized turbines sites produced 1,775 GWh in 10 years, which could provide electricity to 54,181 residences during this period.
Near-Death Experiences and Religious Experience: An Exploration of Spirituality in Medicine
Authors: Kopel Jonathan , Webb Mark
Published: February 2022

There has been a continuous discussion of religious experience since William James, culminating in a rich and varied literature on the epistemology of religious experience in the late twentieth century. There has also been a burgeoning literature on near-death experiences (NDEs), largely on neurology and physiology and sometimes as possible counterevidence to naturalism. One important subject is largely missing, and that is a discussion of NDEs as religious experiences, and what light that might shed on their epistemic status. This paper is an attempt to fill that gap. In part one, we will delineate the topic of NDEs and what medical science has to say about them. In part two, we will lay out a general view of the epistemology of religious experience. In part three, we will apply that understanding of religious experience to NDEs and draw what lessons we may.
Underwater Energy Harvesting to Extend Operation Time of Submersible Sensors
Authors: Faria Carlos L. , Martins Marcos S. , Matos Tiago , Lima Rui , Miranda João M. , Gonçalves Luís M.
Published: February 2022

A linear electromagnetic energy harvesting device for underwater applications, fabricated with a simple manufacturing process, was developed to operate with movement frequencies from 0.1 to 0.4 Hz. The generator has two coils, and the effect of the combination of the two coils was investigated. The experimental study has shown that the energy capture system was able to supply energy to several ocean sensors, producing 7.77 mJ per second with wave movements at 0.4 Hz. This study shows that this energy is enough to restore the energy used by the battery or the capacitor and continue supplying energy to the sensors used in the experimental work. For an ocean wave frequency of 0.4 Hz, the generator can supply power to 8 sensors or 48 sensors, depending on the energy consumed and its optimization.
Long-Term In-Situ Monitoring and Analysis of Terrain in Gas Hydrate Trial Harvesting Area
Authors: Cao Chen , Wang Hao , Ge Yongqiang , Wang Wei , Guo Jin , Zhou Peng , Gao Feng , Chen Jiawang
Published: February 2022

With the increase in global energy demand, the exploration and development of natural gas hydrate in sea has become a research hotspot in recent years. However, the environmental problems that may be brought about by large-scale harvesting are still concerns. The terrain monitoring of the trial harvesting area can effectively prevent the geological disasters that may be caused by the development of hydrates. Therefore, we have developed a new terrain monitoring device, which can work in the deep sea for a long time. Firstly, the structure of the sensor arrays and bus-type control system of the device are introduced. Secondly, an arc model with an interpolation method is used for reconstruction of the monitored terrain. Thirdly, after the accuracy of the sensing arrays are verified in laboratory, the device was placed in the Shenhu area of the South China Sea for more than 6 months of in-situ monitoring. Finally, we analyzed the data and concluded that the terrain of the monitored area was relatively flat, where the maximum subsidence was 12.3 cm and the maximum uplift was 2.75 cm.
Recent Advancements in Learning Algorithms for Point Clouds: An Updated Overview
Authors: Camuffo Elena , Mari Daniele , Milani Simone
Published: February 2022

Recent advancements in self-driving cars, robotics, and remote sensing have widened the range of applications for 3D Point Cloud (PC) data. This data format poses several new issues concerning noise levels, sparsity, and required storage space; as a result, many recent works address PC problems using Deep Learning (DL) solutions thanks to their capability to automatically extract features and achieve high performances. Such evolution has also changed the structure of processing chains and posed new problems to both academic and industrial researchers. The aim of this paper is to provide a comprehensive overview of the latest state-of-the-art DL approaches for the most crucial PC processing operations, i.e., semantic scene understanding, compression, and completion. With respect to the existing reviews, the work proposes a new taxonomical classification of the approaches, taking into account the characteristics of the acquisition set up, the peculiarities of the acquired PC data, the presence of side information (depending on the adopted dataset), the data formatting, and the characteristics of the DL architectures. This organization allows one to better comprehend some final performance comparisons on common test sets and cast a light on the future research trends.
P-Type Metal Oxide Semiconductor Thin Films: Synthesis and Chemical Sensor Applications
Authors: Moumen Abderrahim , Kumarage Gayan C. W. , Comini Elisabetta
Published: February 2022

This review focuses on the synthesis of p-type metal-oxide (p-type MOX) semiconductor thin films, such as CuO, NiO, Co3O4, and Cr2O3, used for chemical-sensing applications. P-type MOX thin films exhibit several advantages over n-type MOX, including a higher catalytic effect, low humidity dependence, and improved recovery speed. However, the sensing performance of CuO, NiO, Co3O4, and Cr2O3 thin films is strongly related to the intrinsic physicochemical properties of the material and the thickness of these MOX thin films. The latter is heavily dependent on synthesis techniques. Many techniques used for growing p-MOX thin films are reviewed herein. Physical vapor-deposition techniques (PVD), such as magnetron sputtering, thermal evaporation, thermal oxidation, and molecular-beam epitaxial (MBE) growth were investigated, along with chemical vapor deposition (CVD). Liquid-phase routes, including sol–gel-assisted dip-and-spin coating, spray pyrolysis, and electrodeposition, are also discussed. A review of each technique, as well as factors that affect the physicochemical properties of p-type MOX thin films, such as morphology, crystallinity, defects, and grain size, is presented. The sensing mechanism describing the surface reaction of gases with MOX is also discussed. The sensing characteristics of CuO, NiO, Co3O4, and Cr2O3 thin films, including their response, sensor kinetics, stability, selectivity, and repeatability are reviewed. Different chemical compounds, including reducing gases (such as volatile organic compounds (VOCs), H2, and NH3) and oxidizing gases, such as CO2, NO2, and O3, were analyzed. Bulk doping, surface decoration, and heterostructures are some of the strategies for improving the sensing capabilities of the suggested pristine p-type MOX thin films. Future trends to overcome the challenges of p-type MOX thin-film chemical sensors are also presented.
A Novel Apparatus for Simultaneous Laser-Light-Sheet Optical Particle Counting and Video Recording in the Same Measurement Chamber at High Temperature
Authors: Zoller Julian , Zargaran Amin , Braschke Kamil , Meyer Jörg , Janoske Uwe , Dittler Achim
Published: February 2022

A novel apparatus was developed, to investigate the detachment of particle structures consisting of soot and ash from a single fibre or a fibre array in hot gas flow. Key features of the novel apparatus are operation at high temperatures while two different measurement techniques are applied simultaneously in the same measurement chamber to observe particle structure detachment from a loaded fibre array. A heated inlet can heat the air stream at the position of the fibre array up to 470 °C, allowing detachment investigations at temperatures relevant for the operation of, e.g., soot particle filters. The first measurement technique integrated in the setup is video recording of the fibre array, which gives qualitative information on the rearrangement or detachment of particulate matter on the fibre. Because it is often difficult to distinguish rearrangement and detachment from pure visual observations, a second measurement technique is applied. This technique is a laser-light-sheet optical particle counter, which can detect detached particle structures and determine their size. The measurable size range is 257 to 1523 µm for glass spheres. This paper presents and discusses the novel apparatus, its calibration and first detachment measurement results.