bluuebunny/crossref_metadata_2025 huggingface dataset:
A directed genome evolution method to enhance hydrogen production in Rhodobacter capsulatus
Authors: Barahona Emma , Isidro Elisa San , Sierra-Heras Laura , Álvarez-Melcón Inés , Jiménez-Vicente Emilio , Buesa José María , Imperial Juan , Rubio Luis M.
Published: August 2022

Nitrogenase-dependent H2 production by photosynthetic bacteria, such as Rhodobacter capsulatus, has been extensively investigated. An important limitation to increase H2 production using genetic manipulation is the scarcity of high-throughput screening methods to detect possible overproducing mutants. Previously, we engineered R. capsulatus strains that emitted fluorescence in response to H2 and used them to identify mutations in the nitrogenase Fe protein leading to H2 overproduction. Here, we used ultraviolet light to induce random mutations in the genome of the engineered H2-sensing strain, and fluorescent-activated cell sorting to detect and isolate the H2-overproducing cells from libraries containing 5 × 105 mutants. Three rounds of mutagenesis and strain selection gradually increased H2 production up to 3-fold. The whole genomes of five H2 overproducing strains were sequenced and compared to that of the parental sensor strain to determine the basis for H2 overproduction. No mutations were present in well-characterized functions related to nitrogen fixation, except for the transcriptional activator nifA2. However, several mutations mapped to energy-generating systems and to carbon metabolism-related functions, which could feed reducing power or ATP to nitrogenase. Time-course experiments of nitrogenase depression in batch cultures exposed mismatches between nitrogenase protein levels and their H2 and ethylene production activities that suggested energy limitation. Consistently, cultivating in a chemostat produced up to 19-fold more H2 than the corresponding batch cultures, revealing the potential of selected H2 overproducing strains.
Audiological biomarkers of tinnitus in an older Portuguese population
Authors: Haider Haúla F. , Ribeiro Diogo , Ribeiro Sara F. , Trigueiros Nuno , Caria Helena , Borrego Luís , Pinto Iola , Papoila Ana L. , Hoare Derek J. , Paço João
Published: August 2022

Tinnitus is a phantom sound perceived in the absence of external acoustic stimulation. It is described in a variety of ways (e.g., buzzing, ringing, and roaring) and can be a single sound or a combination of different sounds. Our study evaluated associations between audiological parameters and the presence or severity of tinnitus, to improve tinnitus diagnosis, treatment, and prognosis. Our sample included 122 older participants (63 women and 59 men), aged 55–75 years from the Portuguese population, with or without sensory presbycusis and with or without tinnitus. All participants underwent a clinical evaluation through a structured interview, Ear, Nose, and Throat observation, and audiological evaluation (standard and extended audiometry, psychoacoustic tinnitus evaluation, auditory brainstem responses, and distortion product otoacoustic emissions). The Tinnitus Handicap Inventory was used to measure tinnitus symptom severity. Our data confirmed that the odds of developing tinnitus were significantly higher in the presence of noise exposure and hearing loss. Also, participants who had abrupt tinnitus onset and moderate or severe hyperacusis featured higher odds of at least moderate tinnitus. However, it was in the ABR that we obtained the most exciting and promising results, namely, in wave I, which was the common denominator in all findings. The increase in wave I amplitude is a protective factor to the odds of having tinnitus. Concerning the severity of tinnitus, the logistic regression model showed that for each unit of increase in the mean ratio V/I of ABR, the likelihood of having at least moderate tinnitus was 10% higher. Advancing knowledge concerning potential tinnitus audiological biomarkers can be crucial for the adequate diagnosis and treatment of tinnitus.
Severe lupus nephritis in the present days
Authors: Moroni Gabriella , Calatroni Marta , Ponticelli Claudio
Published: August 2022

Lupus nephritis (LN) is one of the most frequent and severe organ manifestations of systemic lupus erythematosus (SLE) that is a chronic autoimmune disease. Despite improvement in patient and renal prognosis, the disease continued to be associated with a high rate of end stage kidney disease. Along the last decades, it seems that the epidemiology of LN and its clinical presentation have progressively changed. The forms with renal insufficiency at presentation seem to have progressively reduced in developed countries in favour of more mild clinical presentations with urinary abnormalities only. To this clinical change does not correspond a less severe histological lesions, in fact, the extent of active lesions at kidney biopsy are unchanged, whereas chronic lesions are becoming less frequent and less severe. Meanwhile, new types of severe LN defined by the variable association of demographic, clinical, histological characteristics at diagnosis or during the follow-up are gradually emerging and require attention in assessing the therapy and prognosis.

During the last years, randomized controlled trials have reported the efficacy of new drugs in association with standard therapy to improve the rate of short- and medium-term renal response. One of the advantages is that these results were obtained with reduced dosage of corticosteroids whose protracted use is associated with increase of chronic organ damage. Optimization of therapeutical strategies, tailored on the demographic clinical and histological characteristics, with combination of old and new drugs are urgently needed for severe LN.
Association between serum netrin-1 levels and early neurological deterioration after acute ischemic stroke
Authors: Chen Zhuo , Cao Tianli , Zhong Xingju , Wu Yong , Fu Wei , Fan Chaoli , Jiang Yu , Zhou Qi , Peng Jie , Liao Jieyu , You Zhike , Yi Xin , Tan Jingyu
Published: August 2022

Background and purposes

Experimental studies demonstrated that netrin-1 (NT-1) has anti-inflammatory, tissue regeneration, and immune modulation properties. We aimed to discern the utility of NT-1 as a biomarker for assessing the risk of early neurological deterioration (END) after ischemic stroke.

Methods

This was a prospective study enrolling ischemic stroke patients with symptoms onset <24 h. Serum NT-1 concentrations were measured at admission. The National Institutes of Health Stroke Scale increased by ≥2 points and ≥4 points during the first 72 h after admission and was defined as END2 and END4, respectively.

Results

The study included 268 patients (146 men and 122 women) with a mean age of 63.0 ± 9.6 years. The median NT-1 concentrations were 466.4 pg/ml (interquartile range, 341.4–589.2 pg/ml). During the initial 72 h after admission, END2 was found in 83 (31.0%) patients, and END4 was observed in 48 (17.9%) subjects. After adjusted for potential confounders, multivariate analysis indicated that decreased NT-1 levels is an independent predictor for END2 [odds ratio (OR) 0.62, 95% confidence interval (CI) 0.46–0.84, p < 0.001) and END4 (OR 0.53, 95% CI 0.36–0.76, p < 0.001). Similar results were found when the NT-1 levels were analyzed as a categorical variable. Furthermore, restricted cubic spline analysis showed a linear association between NT-1 concentrations and the risk of END (END2, p = 0.006 for linearity; END4, p < 0.001 for linearity).

Conclusions

Our results suggest that decreased NT-1 levels were significantly associated with a higher risk of END after ischemic stroke.
Case report: A variant of the FIG4 gene with rapidly progressive amyotrophic lateral sclerosis
Authors: Yilihamu Mubalake , Liu Xiaolu , Liu Xiaoxuan , Chen Yong , Fan Dongsheng
Published: August 2022

Heterozygous autosomal-dominant FIG4 mutations are associated with amyotrophic lateral sclerosis (ALS). Here, we describe a variant of the FIG4 gene (c.350dupC, p.Asp118GlyfsTer9) in a patient with rapidly progressive ALS that has not previously been reported in ALS or primary lateral sclerosis (PLS) patients before. Our study provides further information on the genotypes and phenotypes of patients with FIG4 mutations.
Learning to read Chinese promotes two cortico-subcortical pathways: The development of thalamo-occipital and fronto-striatal circuits
Authors: Wang Yanpei , Luo Jie , Ma Leilei , Chen Rui , Wang Jiali , Chu Congying , Men Weiwei , Tan Shuping , Gao Jia-Hong , Qin Shaozheng , He Yong , Dong Qi , Tao Sha
Published: August 2022

Learning to read may result in network reorganization in the developing brain. The thalamus and striatum are two important subcortical structures involved in learning to read. It remains unclear whether the thalamus and striatum may form two independent cortico-subcortical reading pathways during reading acquisition. In this prospective longitudinal study, we aimed to identify whether there may be two independent cortico-subcortical reading pathways involving the thalamus and striatum and to examine the longitudinal predictions between these two cortico-subcortical pathways and reading development in school-age children using cross-lagged panel modeling. A total of 334 children aged 6–12 years completed two reading assessments and resting functional imaging scans at approximately 12-month intervals. The results showed that there were two independent cortico-subcortical pathways, the thalamo-occipital and fronto-striatal circuits. The former may be part of a visual pathway and was predicted longitudinally by reading ability, and the prediction was stronger in children in lower grades and weaker in children in higher grades. The latter may be part of a cognitive pathway related to attention, memory, and reasoning, which was bidirectionally predicted with reading ability, and the predictive effect gradually increasing with reading development. These results extend previous findings on the relationship between functional connectivity and reading competence in children, highlighting the dynamic relationships between the thalamo-occipital and fronto-striatal circuits and reading acquisition.
Characterization of ex vivo and in vivo intraoperative neurosurgical confocal laser endomicroscopy imaging
Authors: Xu Yuan , Abramov Irakliy , Belykh Evgenii , Mignucci-Jiménez Giancarlo , Park Marian T. , Eschbacher Jennifer M. , Preul Mark C.
Published: August 2022

Background

The new US Food and Drug Administration-cleared fluorescein sodium (FNa)-based confocal laser endomicroscopy (CLE) imaging system allows for intraoperative on-the-fly cellular level imaging. Two feasibility studies have been completed with intraoperative use of this CLE system in ex vivo and in vivo modalities. This study quantitatively compares the image quality and diagnostic performance of ex vivo and in vivo CLE imaging.

Methods

Images acquired from two prospective CLE clinical studies, one ex vivo and one in vivo, were analyzed quantitatively. Two image quality parameters – brightness and contrast – were measured using Fiji software and compared between ex vivo and in vivo images for imaging timing from FNa dose and in glioma, meningioma, and intracranial metastatic tumor cases. The diagnostic performance of the two studies was compared.

Results

Overall, the in vivo images have higher brightness and contrast than the ex vivo images (p < 0.001). A weak negative correlation exists between image quality and timing of imaging after FNa dose for the ex vivo images, but not the in vivo images. In vivo images have higher image quality than ex vivo images (p < 0.001) in glioma, meningioma, and intracranial metastatic tumor cases. In vivo imaging yielded higher sensitivity and negative predictive value than ex vivo imaging.

Conclusions

In our setting, in vivo CLE optical biopsy outperforms ex vivo CLE by producing higher quality images and less image deterioration, leading to better diagnostic performance. These results support the in vivo modality as the modality of choice for intraoperative CLE imaging.
Pharmacological and non-pharmacological therapeutic interventions for the treatment of spinal cord injury-induced pain
Authors: Eller Olivia C. , Willits Adam B. , Young Erin E. , Baumbauer Kyle M.
Published: August 2022

Spinal cord injury (SCI) is a complex neurophysiological disorder, which can result in many long-term complications including changes in mobility, bowel and bladder function, cardiovascular function, and metabolism. In addition, most individuals with SCI experience some form of chronic pain, with one-third of these individuals rating their pain as severe and unrelenting. SCI-induced chronic pain is considered to be “high impact” and broadly affects a number of outcome measures, including daily activity, physical and cognitive function, mood, sleep, and overall quality of life. The majority of SCI pain patients suffer from pain that emanates from regions located below the level of injury. This pain is often rated as the most severe and the underlying mechanisms involve injury-induced plasticity along the entire neuraxis and within the peripheral nervous system. Unfortunately, current therapies for SCI-induced chronic pain lack universal efficacy. Pharmacological treatments, such as opioids, anticonvulsants, and antidepressants, have been shown to have limited success in promoting pain relief. In addition, these treatments are accompanied by many adverse events and safety issues that compound existing functional deficits in the spinally injured, such as gastrointestinal motility and respiration. Non-pharmacological treatments are safer alternatives that can be specifically tailored to the individual and used in tandem with pharmacological therapies if needed. This review describes existing non-pharmacological therapies that have been used to treat SCI-induced pain in both preclinical models and clinical populations. These include physical (i.e., exercise, acupuncture, and hyper- or hypothermia treatments), psychological (i.e., meditation and cognitive behavioral therapy), and dietary interventions (i.e., ketogenic and anti-inflammatory diet). Findings on the effectiveness of these interventions in reducing SCI-induced pain and improving quality of life are discussed. Overall, although studies suggest non-pharmacological treatments could be beneficial in reducing SCI-induced chronic pain, further research is needed. Additionally, because chronic pain, including SCI pain, is complex and has both emotional and physiological components, treatment should be multidisciplinary in nature and ideally tailored specifically to the patient.
Early developmental milestones in patients with idiopathic clubfoot treated by Ponseti method
Authors: Pavone Vito , Sapienza Marco , Vescio Andrea , Caldaci Alessia , McCracken Kathryn Louise , Canavese Federico , Testa Gianluca
Published: August 2022

Background

Idiopathic clubfoot, also referred to as congenital talipes equinovarus (CTEV), is one of the most common lower limb deformities observed in newborns, leading to significant functional impairment if untreated. The aims of this study were to (1) assess the developmental milestones in patients with CTEV treated by the Ponseti technique, and to compare them to the unaffected controls; (2) evaluate the possible correlation between developmental milestones, severity of the deformity, and number of casts.

Materials and methods

Seventy-nine subjects were divided into two groups, CTEV group (43 patients; 72 feet) and control group (36 patients). Age, sex, affected side, attainment of babbles (BAL), independent gait (IG), and combined word (CW) were recorded for all patients. In patients with CTEV, Pirani Score (PRS), number of casts (NC), and clinical outcome were collected according to the Clubfoot Assessment Protocol (CAP), The American Orthopedic Foot and Ankle Score (AOFAS), and Foot and Ankle Disability Index (FADI).

Results

IG was achieved later later than the unaffected controls by 12/43 patients (27.9%) with CTEV and 3/36 patients in the control group (8.3%) (p = 0.04) and in a mean time of 16.8 ± 3.5 months and 13.2 ± 2.7 months, respectively (p = 0.001). In the CTEV group the mean value of CAP was 98.6 ± 4.7, of AOFAS of 98.4 ± 4.4 and of FADI equal to 99.9 ± 0.44. There were no statistically significant differences for BAL and CW; and no correlation with PRS, NC, or clinical score were identified.

Conclusion

CTEV patients managed by the Ponseti technique achieve independent gait later than the unaffected controls, although they do so within the age limit of developmental. On the other hand, the Ponseti treatment has no impact on attainment of language development.
Network pharmacology and experimental analysis to reveal the mechanism of Dan-Shen-Yin against endothelial to mesenchymal transition in atherosclerosis
Authors: Hong Mengyun , Wu Yubiao , Zhang Haiyi , Gu Jinchao , Chen Juanjuan , Guan Yancheng , Qin Xiude , Li Yu , Cao Jiahui
Published: August 2022

Atherosclerosis is a chronic inflammatory disease characterized by the formation of plaque and endothelial dysfunction. Under pro-inflammatory conditions, endothelial cells adopt a mesenchymal phenotype by a process called endothelial-to-mesenchymal transition (EndMT) which plays an important role in the pathogenesis of atherosclerosis. Dan-Shen-Yin (DSY) is a well-known traditional Chinese medicine used in the treatment of cardiovascular disease. However, the molecular mechanism whereby DSY mitigates atherosclerosis remains unknown. Therefore, we employed a network pharmacology-based strategy in this study to determine the therapeutic targets of DSY, and in vitro experiments to understand the molecular pharmacology mechanism. The targets of the active ingredients of DSY related to EndMT and atherosclerosis were obtained and used to construct a protein-protein interaction (PPI) network followed by network topology and functional enrichment analysis. Network pharmacology analysis revealed that the PI3K/AKT pathway was the principal signaling pathway of DSY against EndMT in atherosclerosis. Molecular docking simulations indicated strong binding capabilities of DSY’s bioactive ingredients toward PI3K/AKT pathway molecules. Experimentally, DSY could efficiently modify expression of signature EndMT genes and decrease expression of PI3K/AKT pathway signals including integrin αV, integrin β1, PI3K, and AKT1 in TGF-β2-treated HUVECs. LASP1, which is upstream of the PI3K/AKT pathway, had strong binding affinity to the majority of DSY’s bioactive ingredients, was induced by EndMT-promoting stimuli involving IL-1β, TGF-β2, and hypoxia, and was downregulated by DSY. Knock-down of LASP1 attenuated the expression of integrin αV, integrin β1, PI3K, AKT1 and EndMT-related genes induced by TGF-β2, and minimized the effect of DSY. Thus, our study showed that DSY potentially exerted anti-EndMT activity through the LASP1/PI3K/AKT pathway, providing a possible new therapeutic intervention for atherosclerosis.
Structural evolution of international crop trade networks
Authors: Zhang Yin-Ting , Zhou Wei-Xing
Published: August 2022

Food security is a critical issue closely linked to human being. With the increasing demand for food, international trade has become the main access to supplementing domestic food shortages, which not only alleviates local food shocks, but also exposes economies to global food crises. In this paper, we construct four temporal international crop trade networks (iCTNs) based on trade values of maize, rice, soybean and wheat, and describe the structural evolution of different iCTNs from 1993 to 2018. We find that the size of all the four iCTNs expanded from 1993 to 2018 with more participants and larger trade values. Our results show that the iCTNs not only become tighter according to the increasing in network density and clustering coefficient, but also get more similar. We also find that the iCTNs are not always disassortative, unlike the world cereal trade networks and other international commodity trade networks. The degree assortative coefficients depend on degree directions and crop types. The analysis about assortativity also indicates that economies with high out-degree tend to connect with economies with low in-degree and low out-degree. Additionally, we compare the structure of the four iCTNs to enhance our understanding of the international food trade system. Although the overall evolutionary patterns of different iCTNs are similar, some crops exhibit idiosyncratic trade patterns. It highlights the need to consider different crop networks’ idiosyncratic features while making food policies. Our findings about the dynamics of the iCTNs play an important role in understanding vulnerabilities in the global food system.
Resetting the circadian clock of Alzheimer’s mice via GLP-1 injection combined with time-restricted feeding
Authors: Dong Yanqiong , Cheng Le , Zhao Yingying
Published: August 2022

Circadian rhythm disturbances are the most common symptoms during the early onset of AD. Circadian rhythm disorders aggravate the deposition of amyloid plaques in the brains of AD patients. Therefore, improving the circadian rhythm of AD patients might slow down the pathological development of neurodegeneration. Circadian regulation is driven by a master clock in suprachiasmatic nuclei (SCN) and peripheral clock located in peripheral organs. The rhythmic feeding–fasting cycle has been proved to dominant cue to entrain peripheral clocks. We hypothesized that dietary intervention to a certain period of time during the dark phase might entrain the clock and reset the disrupted daily rhythms of AD mice. In this study, exogenous glucagon-like peptide-1 (GLP-1) treatment, time-restricted feeding (TRF), and the combination were used to examine the effect of overall circadian rhythm and neurodegenerative pathogenesis of transgenic AD mice. It was confirmed that GLP-1 administration together with time-restricted feeding improves circadian rhythm of 5 × FAD mice including the physiological rhythm of the activity–rest cycle, feeding–fasting cycle, core body temperature, and hormone secretion. Furthermore, GLP-1 and TRF treatments improved the diurnal metabolic homeostasis, spatial cognition, and learning of 5 × FAD mice. The aberrant expression of clock genes, including Baml1, Clock, and Dbp, was improved in the hypothalamus, and pathological changes in neurodegeneration and neuroinflammation were also observed in AD mice with dual treatment.
An open and continuously updated fern tree of life
Authors: Nitta Joel H. , Schuettpelz Eric , Ramírez-Barahona Santiago , Iwasaki Wataru
Published: August 2022

Ferns, with about 12,000 species, are the second most diverse lineage of vascular plants after angiosperms. They have been the subject of numerous molecular phylogenetic studies, resulting in the publication of trees for every major clade and DNA sequences from nearly half of all species. Global fern phylogenies have been published periodically, but as molecular systematics research continues at a rapid pace, these become quickly outdated. Here, we develop a mostly automated, reproducible, open pipeline to generate a continuously updated fern tree of life (FTOL) from DNA sequence data available in GenBank. Our tailored sampling strategy combines whole plastomes (few taxa, many loci) with commonly sequenced plastid regions (many taxa, few loci) to obtain a global, species-level fern phylogeny with high resolution along the backbone and maximal sampling across the tips. We use a curated reference taxonomy to resolve synonyms in general compliance with the community-driven Pteridophyte Phylogeny Group I classification. The current FTOL includes 5,582 species, an increase of ca. 40% relative to the most recently published global fern phylogeny. Using an updated and expanded list of 51 fern fossil constraints, we find estimated ages for most families and deeper clades to be considerably older than earlier studies. FTOL and its accompanying datasets, including the fossil list and taxonomic database, will be updated on a regular basis and are available via a web portal (https://fernphy.github.io) and R packages, enabling immediate access to the most up-to-date, comprehensively sampled fern phylogeny. FTOL will be useful for anyone studying this important group of plants over a wide range of taxonomic scales, from smaller clades to the entire tree. We anticipate FTOL will be particularly relevant for macroecological studies at regional to global scales and will inform future taxonomic systems with the most recent hypothesis of fern phylogeny.
Women’s work–family conflict and its consequences in commuter marriages: The moderating role of spouses’ family commitment in a dyad analysis
Authors: Wu Hsin-Pei , Wang Yu-Mei
Published: August 2022

This study aims to explore the relationship between work-family conflict and its consequences on job, family, and marital satisfaction among stay-at-home wives of commuter couples by testing the moderating effect of commuters’ family (parental, marital, and household) commitment. The phenomenon of commuter marriages is detectable among well-educated and employed couples in modern society. The study collected dyadic data from 120 dual-earner and noncohabitating couples by using convenience sampling. The analytical approach of the Actor-Partner Interdependence Model was adopted. The results revealed that stay-at-home wives perceived more job dissatisfaction due to work-to-family conflicts and perceived more job, family, and marital dissatisfaction caused by family-to-work conflicts. Moreover, the partner moderating effect of the commuters’ family commitment as spouse support reversed the negative relationship between stay-at-home wives’ family-to-work conflicts and family satisfaction.
Association between community psychological label and user portrait model based on multimodal neural network
Authors: Jiang Hao , Yin Xuehong
Published: August 2022

By analyzing traditional deep learning multimode retrieval methods, an optimized multimode retrieval model based on convolutional neural network is established. This article proposes an innovative semi-supervised social network user portrait analysis model (UPAM) based on user portrait model, which integrates users’ social information and some known user attribute information (such as educational background and residence) into a unified topic model framework. Finally, a semi-supervised user portrait analysis method based on user social information and partial known user attribute information is proposed. According to the correlation of user attributes, the cross-validation method is used to train model prediction task and improve the prediction effect. In the first-level model, using a different model to extract the features in the user query, the basis of the second hierarchy model, Stacking is used to further integrate characteristics, finally realizing the attribute population forecast, and experimental verification showing the proposed model’s effectiveness in various attributes of a population.
The discursive construction of corporate identity in the corporate social responsibility reports: A case study of Starbucks
Authors: Li Xuyan
Published: August 2022

Both corporate identity and corporate social responsibilities are of strategic importance to companies’ reputation and competitiveness. From a social constructivist view, identity is constructed in discourse. Therefore, this study sets out to investigate how corporate identity is discursively constructed in corporate CSR communication. Taking Starbucks as an example, this corpus-assisted study explores how Starbucks deploys nomination, predication, and intensification strategies and the corresponding linguistic resources to discursively construct itself and its main stakeholder groups in the CSR reports from the perspective of Discourse-Historical Approach to Critical Discourse Analysis. Also, how Starbucks addresses or presents issues in which scandals or problems reside is investigated. The findings show that Starbucks explicitly constructs itself as the supportive care-taker of the partners, faithful deliverer of good customer experience, powerful helper of poor farmers, and CSR-conscious selector of suppliers, who takes a strongly committed and proactive CSR stance through the discourse. However, behind such discursive construction are the hidden ideologies and corporate agenda of a capitalistic nature, with Starbucks veiling the power dominance and unequal power relations. This study not only contributes to the understanding of the discursive construction of corporate identity, but also helps raise peoples’ awareness of the power game at play behind the corporate discourse.
Children’s representations of the COVID-19 lockdown and pandemic through drawings
Authors: Cornaggia Alessia , Bianco Federica , Gilli Gabriella , Marchetti Antonella , Massaro Davide , Castelli Ilaria
Published: August 2022

The COVID-19 pandemic and the measures to face it have placed children and their caregivers in front of many challenges that could represent sources of stress. This work aims to explore the point of view of children through drawing, as a spontaneous means of expression, relating it to parents’ perceptions of children’s difficulties, strengths, and mentalization skills. The sample consists of 18 children (mean age = 8.22, SD = 1.79). Parents were asked to complete: a socio-demographic questionnaire with information on the impact of COVID-19 on the family, the Strengths and Difficulties Questionnaire, and the Everyday Mindreading Scale. Children were asked to draw three moments: “Before” the pandemic, “During” the lockdown, and “After,” when the COVID-19 will be passed. The drawings were coded by constructing a content and expressive analysis grid, adapting coding systems found in the literature. Data were collected at the beginning of the summer of 2020, just after the first lockdown period (from March to May 2020 in Italy). The results of the present work are in line with previous studies that reported experiences of wellbeing and tranquility of children in time spent at home with family during the pandemic. From the drawings emerges that children feel sufficiently able to master the situation, as reflected by including themselves in drawings and providing many details of the house in “During” drawings. The literature also reports a feeling of sadness/loneliness caused by the lack of friends, an element that we also find in the tendency to represent friends significantly more in the drawings concerning the future. Some contents of drawings (inclusion of friends, relatives, and parents) appeared associated with emotional, interpersonal, and mentalizing abilities of children, as perceived by parents. Exploring children’s representations of a stressful event like the pandemic through drawings allows to focus both on their difficulties and on their resources, with useful implications for the educational support.
Autism Symptoms in Children and Young Adults With Fragile X Syndrome, Angelman Syndrome, Tuberous Sclerosis Complex, and Neurofibromatosis Type 1: A Cross-Syndrome Comparison
Authors: Lubbers Kyra , Stijl Eefje M. , Dierckx Bram , Hagenaar Doesjka A. , ten Hoopen Leontine W. , Legerstee Jeroen S. , de Nijs Pieter F. A. , Rietman André B. , Greaves-Lord Kirstin , Hillegers Manon H. J. , Dieleman Gwendolyn C. , Mous Sabine E. ,   ENCORE Expertise Center
Published: August 2022

Objective

The etiology of autism spectrum disorder (ASD) remains unclear, due to genetic heterogeneity and heterogeneity in symptoms across individuals. This study compares ASD symptomatology between monogenetic syndromes with a high ASD prevalence, in order to reveal syndrome specific vulnerabilities and to clarify how genetic variations affect ASD symptom presentation.

Methods

We assessed ASD symptom severity in children and young adults (aged 0-28 years) with Fragile X Syndrome (FXS, n = 60), Angelman Syndrome (AS, n = 91), Neurofibromatosis Type 1 (NF1, n = 279) and Tuberous Sclerosis Complex (TSC, n = 110), using the Autism Diagnostic Observation Schedule and Social Responsiveness Scale. Assessments were part of routine clinical care at the ENCORE expertise center in Rotterdam, the Netherlands. First, we compared the syndrome groups on the ASD classification prevalence and ASD severity scores. Then, we compared individuals in our syndrome groups with an ASD classification to a non-syndromic ASD group (nsASD, n = 335), on both ASD severity scores and ASD symptom profiles. Severity scores were compared using MANCOVAs with IQ and gender as covariates.

Results

Overall, ASD severity scores were highest for the FXS group and lowest for the NF1 group. Compared to nsASD, individuals with an ASD classification in our syndrome groups showed less problems on the instruments' social domains. We found a relative strength in the AS group on the social cognition, communication and motivation domains and a relative challenge in creativity; a relative strength of the NF1 group on the restricted interests and repetitive behavior scale; and a relative challenge in the FXS and TSC groups on the restricted interests and repetitive behavior domain.

Conclusion

The syndrome-specific strengths and challenges we found provide a frame of reference to evaluate an individual's symptoms relative to the larger syndromic population and to guide treatment decisions. Our findings support the need for personalized care and a dimensional, symptom-based diagnostic approach, in contrast to a dichotomous ASD diagnosis used as a prerequisite for access to healthcare services. Similarities in ASD symptom profiles between AS and FXS, and between NF1 and TSC may reflect similarities in their neurobiology. Deep phenotyping studies are required to link neurobiological markers to ASD symptomatology.
Brain region- and sex-specific transcriptional profiles of microglia
Authors: Barko Kelly , Shelton Micah , Xue Xiangning , Afriyie-Agyemang Yvette , Puig Stephanie , Freyberg Zachary , Tseng George C. , Logan Ryan W. , Seney Marianne L.
Published: August 2022

Microglia are resident macrophages of the brain, performing roles related to brain homeostasis, including modulation of synapses, trophic support, phagocytosis of apoptotic cells and debris, as well as brain protection and repair. Studies assessing morphological and transcriptional features of microglia found regional differences as well as sex differences in some investigated brain regions. However, markers used to isolate microglia in many previous studies are not expressed exclusively by microglia or cannot be used to identify and isolate microglia in all contexts. Here, fluorescent activated cell sorting was used to isolate cells expressing the microglia-specific marker TMEM119 from prefrontal cortex (PFC), striatum, and midbrain in mice. RNA-sequencing was used to assess the transcriptional profile of microglia, focusing on brain region and sex differences. We found striking brain region differences in microglia-specific transcript expression. Most notable was the distinct transcriptional profile of midbrain microglia, with enrichment for pathways related to immune function; these midbrain microglia exhibited a profile similar to disease-associated or immune-surveillant microglia. Transcripts more highly expressed in PFC isolated microglia were enriched for synapse-related pathways while microglia isolated from the striatum were enriched for pathways related to microtubule polymerization. We also found evidence for a gradient of expression of microglia-specific transcripts across the rostral-to-caudal axes of the brain, with microglia extracted from the striatum exhibiting a transcriptional profile intermediate between that of the PFC and midbrain. We also found sex differences in expression of microglia-specific transcripts in all 3 brain regions, with many selenium-related transcripts more highly expressed in females across brain regions. These results suggest that the transcriptional profile of microglia varies between brain regions under homeostatic conditions, suggesting that microglia perform diverse roles in different brain regions and even based on sex.
Haze pollution reduction in Chinese cities: Has digital financial development played a role?
Authors: Zhao Chunkai , Yan Bihe
Published: August 2022

Based on the exogenous shock of digital financial development in China in 2013, a difference-in-differences (DID) model is set up in this paper to investigate the causal relationship between digital financial development and haze pollution reduction. The finding of the paper is that a one standard deviation increase in digital finance after 2013 decreases the PM2.5 concentrations by 0.2708 standard deviations. After a number of robustness checks, like placebo tests, instrumental variable (IV) estimations, eliminating disruptive policies, and using alternative specifications, this causal effect is not challenged. In addition, this paper explores three potential mechanisms of digital finance to reduce haze pollution: technological innovation, industrial upgrading, and green development. Moreover, the heterogeneous effects signify that the usage depth of digital finance works best in haze pollution reduction. Digital finance has more positive effects in cities in the north and those with superior Internet infrastructure and higher levels of traditional financial development. However, the quantile regression estimates suggest that for cities with light or very serious haze pollution, the positive impact of digital finance is limited. These findings supplement the research field on the environmental benefits of digital finance, which provides insights for better public policies about digital financial development to achieve haze pollution reduction.
Metachronous pancreatic cancer 18 years after resection of common bile duct cancer: A case report
Authors: Kim Seoung Hoon
Published: August 2022

We report an extremely rare case of metachronous double cancers of the bile duct and pancreas in a single patient who underwent successful curative resections consecutively. At the age of 57, a woman underwent pylorus-preserving pancreaticoduodenectomy for a lesion that was pathologically diagnosed as moderately differentiated adenocarcinoma of the distal common bile duct. Eighteen years later, a pancreatic mass was detected during a follow-up examination. Abdominal computed tomography showed a bigger 2.3 cm lesion at the remnant pancreas body, which suggested a diagnosis of primary pancreatic cancer or metastasis. After admission and further work-up confirming no other lesions, completion total pancreatectomy was performed. The pathological diagnosis of the resected specimen was moderately differentiated pancreatic ductal adenocarcinoma, and this case highlights the occurrence of metachronous double primary cancers developed in both the distal bile duct and the pancreas with an interval of 18 years. This is the first report on the metachronous primary cancers of the bile duct and pancreas with a long interval within an English review of the literature in the MEDLINE. This case serves as another data point to guide surgeons that they should be vigilant for the postoperative long-term surveillance of patients with pancreatobiliary cancer.
Fluorescently labeled nuclear morphology is highly informative of neurotoxicity
Authors: Wang Shijie , Linsley Jeremy W. , Linsley Drew A. , Lamstein Josh , Finkbeiner Steven
Published: August 2022

Neurotoxicity can be detected in live microscopy by morphological changes such as retraction of neurites, fragmentation, blebbing of the neuronal soma and ultimately the disappearance of fluorescently labeled neurons. However, quantification of these features is often difficult, low-throughput, and imprecise due to the overreliance on human curation. Recently, we showed that convolutional neural network (CNN) models can outperform human curators in the assessment of neuronal death from images of fluorescently labeled neurons, suggesting that there is information within the images that indicates toxicity but that is not apparent to the human eye. In particular, the CNN’s decision strategy indicated that information within the nuclear region was essential for its superhuman performance. Here, we systematically tested this prediction by comparing images of fluorescent neuronal morphology from nuclear-localized fluorescent protein to those from freely diffused fluorescent protein for classifying neuronal death. We found that biomarker-optimized (BO-) CNNs could learn to classify neuronal death from fluorescent protein-localized nuclear morphology (mApple-NLS-CNN) alone, with super-human accuracy. Furthermore, leveraging methods from explainable artificial intelligence, we identified novel features within the nuclear-localized fluorescent protein signal that were indicative of neuronal death. Our findings suggest that the use of a nuclear morphology marker in live imaging combined with computational models such mApple-NLS-CNN can provide an optimal readout of neuronal death, a common result of neurotoxicity.
A Decreased Nitrogen Rate with Increased Planting Density Facilitated Better Palatability of Conventional japonica Rice at High Yield Levels
Authors: Ge Jialin , Zhang Xubin , Wei Huanhe , Dai Qigen
Published: August 2022

A decreased nitrogen (N) rate with increased planting density (DNID) is recommended as a feasible method to maintain rice grain yield and N-utilization efficiency. However, it is still unclear whether DNID could improve grain quality, particularly the edible quality of rice. Three high-yield rice with superior palatability (HYSP) and three high-yield rice with inferior palatability (HYIP) were grown under DNID and local cultivation practices (LCP) in the same paddy fields during the 2018 and 2019 rice planting seasons. HYSP exhibited similar grain yields to HYIP under both cultivation treatments. HYSP had more spikelets per m2 through panicles per m2, while having lower spikelets per panicle and 1000-kernel weight than HYIP. DNID increased panicles per m2 and 1000-kernel weight and decreased spikelets per panicle of HYSP and HYIP compared with LCP. HYSP exhibited more biomass accumulation during heading to maturity under NDID and LCP (p < 0.05), which is supported by a higher leaf area index (LAI) and SPAD values after heading. DNID reduced shoot biomass weight and non-structural carbohydrate, while increasing harvest index and NSC remobilization reserve, especially for HYSP (p < 0.05). HYSP had a higher amylopectin content, total starch content, gel consistency, stickiness, and overall palatability (p < 0.05), while it had a lower hardness (p < 0.05) than HYIP. Compared with LCP, DNID increased the amylose content, amylopectin content, total starch content, gel consistency, stickiness, and overall palatability, while it decreased grain protein content and hardness of HYSP and HYIP. HYSP showed consistently higher peak viscosity, breakdown, and gelatinization temperatures (p < 0.05), while it showed lower setback (p < 0.05) than HYIP. For HYSP and HYIP, DNID increased the peak viscosity, breakdown, and gelatinization temperatures (p < 0.05), while it decreased the setback compared with LCP. Generally, the results indicated that coordinated yield components, more post-heading biomass accumulation, lower amylose content, higher peak viscosity and breakdown with lower setback, and higher gelatinization temperatures facilitated high-level grain yield and excellent cooked rice palatability of HYSP. DNID is a feasible method to maintain rice grain yield and enhance the quality of cooked rice for edible properties.
Genotype-by-Environment Interaction of Yam (Dioscorea species) for Yam Mosaic Virus Resistance, Dry Matter Content and Yield in Uganda
Authors: Adjei Emmanuel Amponsah , Esuma Williams , Alicai Titus , Chamba Emmanuel Boache , Edema Richard , Dramadri Isaac Onziga , Ozimati Alfred Adebo , Agaba Rolland , Odong Thomas Lapaka
Published: August 2022

Often, yam cultivars grown in different agro-ecologies show differential responses across production environments, a term known as genotype-by-environment interaction. Such genotype-by-environment interaction makes selection of the best genotypes under varied production environments more complex. This study evaluated twenty yam genotypes in six test environments to assess genotype, environment, and their interaction effects on tuber yield, response to yam mosaic virus, and dry matter content. The experiments were conducted over two seasons across three locations in Uganda, using a randomized complete block design with three replications. There were significant effects (p ≤ 0.001) for genotype (G), environment (E), and genotype-by-environment interaction for all key traits assessed. Serere (2021) and Namulonge (2021) were identified as the most discriminating and representative environments for testing responses to yam mosaic virus, respectively. Serere (2021) was recognized as the most discriminating environment, whereas Arua (2021) emerged closest to an ideal environment for assessing yam tuber yield. The tested genotypes also exhibited resistance to yam mosaic virus disease, had high tuber yields and dry matter content. Genotypes UGY16020, UGY16034, UGY16042, and UGY16080 demonstrated highest resistance to yam mosaic virus disease, along with high yield and dry matter content, and are thus potential parents for yam genetic improvement. Further evaluation of the four genotypes should be carried out within farmers’ production systems for selection, improvement and release as new yam varieties for Uganda.
Study of Codon Usage Patterns and Influencing Factors in Rice Yellow Mottle Virus Based on Coding Sequence Data
Authors: Rahman Siddiq Ur , Nawaz Sajid , Ullah Sifat , Rahman Inayat Ur , Haq Muhammad Inam Ul , Khan Muazzam Ali , Al-Ghamdi Abdullah Ahmed , Al-Hemaid Fahad M. , Elshikh Mohamed S. , Aljowaie Reem M. , Eltayb Wafa Ali
Published: August 2022

Rice yellow mottle virus (RYMV), transmitted by chrysomelids, is one of the major viral pathogens that has devastated rice production in Sub-Saharan Africa. RYMV is a member of the genus Sobemoviruses in the family Solemoviridae and harbors a positive-sense single-stranded RNA (+ssRNA). Here, we used 50 RYMV strains, applying the codon usage bias (CUB). Both base content and relative synonymous codon usage (RSCU) analysis revealed that GC-ended codons were more frequently used in the genome of RYMV. Further low codon usage bias was observed from the effective number of codons (ENC) value. The neutrality plot analysis suggested the dominant factor of natural selection was involved in the structuring of CUB in RYMV. Based on RSCU values, the RYMV and its host relationship indicate that the RYMV develops codon usage patterns similar to its host. Generally, both natural selection and mutational pressure impact the codon usage pattern of the protein-coding genes in RYMV. This study is important because it characterized the codon usage pattern in the RYMV genomes and provided the necessary data for a basic evolutionary study on them. Additionally, we recommend that experiments such as whole genome sequencing (WGS) or dual RNA sequencing (DRS) should be considered in order to correlate these in-silico findings with viral diseases in the future.