bluuebunny/crossref_metadata_2025 huggingface dataset:
Is core knowledge a natural subdivision of infant cognition?
Authors: Kaicher Caroline M. , Conti Julia J. , Dedhe Abhishek M. , Aulet Lauren S. , Cantlon Jessica F.
Published: June 2024

We examine Spelke's core knowledge taxonomy and test its boundaries. We ask whether Spelke's core knowledge is a distinct type of cognition in the sense that the cognitive processes it includes and excludes are biologically and mechanically coherent.
Early pragmatic expectations in human infancy
Authors: Tauzin Tibor , Jacob Pierre , Gergely György
Published: June 2024

There is no room for pragmatic expectations about communicative interactions in core cognition. Spelke takes the combinatorial power of the human language faculty to overcome the limits of core cognition. The question is: Why should the combinatorial power of the human language faculty support infants' pragmatic expectations not merely about speech, but also about nonverbal communicative interactions?
Assimilating Summer Sea‐Ice Thickness Observations Improves Arctic Sea‐Ice Forecast
Authors: Song Ruizhe , Mu Longjiang , Loza Svetlana N. , Kauker Frank , Chen Xianyao
Published: June 2024

Accurate Arctic sea‐ice forecasting for the melt season is still a major challenge because of the lack of reliable pan‐Arctic summer sea‐ice thickness (SIT) data. A new summer CryoSat‐2 SIT observation data set based on an artificial intelligence algorithm may alleviate this situation. We assess the impact of this new data set on the initialization of sea‐ice forecasts in the melt seasons of 2015 and 2016 in a coupled sea ice‐ocean model with data assimilation. We find that the assimilation of the summer CryoSat‐2 SIT observations can reduce the summer ice‐edge forecast error. Further, adding SIT observations to an established forecast system with sea‐ice concentration assimilation leads to more realistic short‐term summer ice‐edge forecasts in the Arctic Pacific sector. The long‐term Arctic‐wide SIT prediction is also improved. In spite of remaining uncertainties, summer CryoSat‐2 SIT observations have the potential to improve Arctic sea‐ice forecast on multiple time scales.
A Cullin 5-based complex serves as an essential modulator of ORF9b stability in SARS-CoV-2 replication
Authors: Zhou Yuzheng , Chen Zongpeng , Liu Sijie , Liu Sixu , Liao Yujie , Du Ashuai , Dong Zijun , Zhang Yongxing , Chen Xuan , Tao Siyi , Wu Xin , Razzaq Aroona , Xu Gang , Tan De-an , Li Shanni , Deng Youwen , Peng Jian , Dai Shuyan , Deng Xu , Zhang Xianwen , Jiang Taijiao , Zhang Zheng , Cheng Gong , Zhao Jincun , Xia Zanxian
Published: June 2024

The ORF9b protein, derived from the nucleocapsid’s open-reading frame in both SARS-CoV and SARS-CoV-2, serves as an accessory protein crucial for viral immune evasion by inhibiting the innate immune response. Despite its significance, the precise regulatory mechanisms underlying its function remain elusive. In the present study, we unveil that the ORF9b protein of SARS-CoV-2, including emerging mutant strains like Delta and Omicron, can undergo ubiquitination at the K67 site and subsequent degradation via the proteasome pathway, despite certain mutations present among these strains. Moreover, our investigation further uncovers the pivotal role of the translocase of the outer mitochondrial membrane 70 (TOM70) as a substrate receptor, bridging ORF9b with heat shock protein 90 alpha (HSP90α) and Cullin 5 (CUL5) to form a complex. Within this complex, CUL5 triggers the ubiquitination and degradation of ORF9b, acting as a host antiviral factor, while HSP90α functions to stabilize it. Notably, treatment with HSP90 inhibitors such as GA or 17-AAG accelerates the degradation of ORF9b, leading to a pronounced inhibition of SARS-CoV-2 replication. Single-cell sequencing data revealed an up-regulation of HSP90α in lung epithelial cells from COVID-19 patients, suggesting a potential mechanism by which SARS-CoV-2 may exploit HSP90α to evade the host immunity. Our study identifies the CUL5-TOM70-HSP90α complex as a critical regulator of ORF9b protein stability, shedding light on the intricate host–virus immune response dynamics and offering promising avenues for drug development against SARS-CoV-2 in clinical settings.
Mycobacterium tuberculosis strain with deletions in menT3 and menT4 is attenuated and confers protection in mice and guinea pigs
Authors: Gosain Tannu Priya , Chugh Saurabh , Rizvi Zaigham Abbas , Chauhan Neeraj Kumar , Kidwai Saqib , Thakur Krishan Gopal , Awasthi Amit , Singh Ramandeep
Published: June 2024

The genome of Mycobacterium tuberculosis encodes for a large repertoire of toxin-antitoxin systems. In the present study, MenT3 and MenT4 toxins belonging to MenAT subfamily of TA systems have been functionally characterized. We demonstrate that ectopic expression of these toxins inhibits bacterial growth and this is rescued upon co-expression of their cognate antitoxins. Here, we show that simultaneous deletion of menT3 and menT4 results in enhanced susceptibility of M. tuberculosis upon exposure to oxidative stress and attenuated growth in guinea pigs and mice. We observed reduced expression of transcripts encoding for proteins that are essential or required for intracellular growth in mid-log phase cultures of ΔmenT4ΔT3 compared to parental strain. Further, the transcript levels of proteins involved in efficient bacterial clearance were increased in lung tissues of ΔmenT4ΔT3 infected mice relative to parental strain infected mice. We show that immunization of mice and guinea pigs with ΔmenT4ΔT3 confers significant protection against M. tuberculosis infection. Remarkably, immunization of mice with ΔmenT4ΔT3 results in increased antigen-specific TH1 bias and activated memory T cell response. We conclude that MenT3 and MenT4 are important for M. tuberculosis pathogenicity and strains lacking menT3 and menT4 have the potential to be explored further as vaccine candidates.
Distinct functions of microtubules and actin filaments in the transportation of the male germ unit in pollen
Authors: Wang Xiangfei , Li Tonghui , Xu Jiuting , Zhang Fanfan , Liu Lifang , Wang Ting , Wang Chun , Ren Haiyun , Zhang Yi
Published: June 2024

Flowering plants rely on the polarized growth of pollen tubes to deliver sperm cells (SCs) to the embryo sac for double fertilization. In pollen, the vegetative nucleus (VN) and two SCs form the male germ unit (MGU). However, the mechanism underlying directional transportation of MGU is not well understood. In this study, we provide the first full picture of the dynamic interplay among microtubules, actin filaments, and MGU during pollen germination and tube growth. Depolymerization of microtubules and inhibition of kinesin activity result in an increased velocity and magnified amplitude of VN’s forward and backward movement. Pharmacological washout experiments further suggest that microtubules participate in coordinating the directional movement of MGU. In contrast, suppression of the actomyosin system leads to a reduced velocity of VN mobility but without a moving pattern change. Moreover, detailed observation shows that the direction and velocity of VN’s movement are in close correlations with those of the actomyosin-driven cytoplasmic streaming surrounding VN. Therefore, we propose that while actomyosin-based cytoplasmic streaming influences on the oscillational movement of MGU, microtubules and kinesins avoid MGU drifting with the cytoplasmic streaming and act as the major regulator for fine-tuning the proper positioning and directional migration of MGU in pollen.
Identification of the FSH-RH as the other gonadotropin-releasing hormone
Authors: Uehara Shun Kenny , Nishiike Yuji , Maeda Kazuki , Karigo Tomomi , Kuraku Shigehiro , Okubo Kataaki , Kanda Shinji
Published: June 2024

In vertebrates, folliculogenesis and ovulation are regulated by two distinct pituitary gonadotropins: follicle-stimulating hormone (FSH) and luteinizing hormone (LH). Currently, there is an intriguing consensus that a single hypothalamic neurohormone, gonadotropin-releasing hormone (GnRH), regulates the secretion of both FSH and LH, although the required timing and functions of FSH and LH are different. However, recent studies in many non-mammalian vertebrates indicated that GnRH is dispensable for FSH function. Here, by using medaka as a model teleost, we successfully identify cholecystokinin as the other gonadotropin regulator, FSH-releasing hormone (FSH-RH). Our histological and in vitro analyses demonstrate that hypothalamic cholecystokinin-expressing neurons directly affect FSH cells through the cholecystokinin receptor, Cck2rb, thereby increasing the expression and release of FSH. Remarkably, the knockout of this pathway minimizes FSH expression and results in a failure of folliculogenesis. Here, we propose the existence of the “dual GnRH model” in vertebrates that utilize both FSH-RH and LH-RH.
Amplification of electromagnetic fields by a rotating body
Authors: Braidotti M. C. , Vinante A. , Cromb M. , Sandakumar A. , Faccio D. , Ulbricht H.
Published: June 2024

In 1971, Zel’dovich predicted the amplification of electromagnetic (EM) waves scattered by a rotating metallic cylinder, gaining mechanical rotational energy from the body. This phenomenon was believed to be unobservable with electromagnetic fields due to technological difficulties in meeting the condition of amplification that is, the cylinder must rotate faster than the frequency of the incoming radiation. Here, we measure the amplification of an electromagnetic field, generated by a toroid LC-circuit, scattered by an aluminium cylinder spinning in the toroid gap. We show that when the Zel’dovich condition is met, the resistance induced by the cylinder becomes negative implying amplification of the incoming EM fields. These results reveal the connection between the concept of induction generators and the physics of this fundamental physics effect and open new prospects towards testing the Zel’dovich mechanism in the quantum regime, as well as related quantum friction effects.
Stöber method to amorphous metal-organic frameworks and coordination polymers
Authors: Zhang Wei , Liu Yanchen , Jeppesen Henrik S. , Pinna Nicola
Published: June 2024

The Stöber method is a widely-used sol-gel route for synthesizing amorphous SiO2 colloids and conformal coatings. However, the material systems compatible with this method are still limited. Herein, we have extended the approach to metal-organic frameworks (MOFs) and coordination polymers (CPs) by mimicking the Stöber method. We introduce a general synthesis route to amorphous MOFs or CPs by making use of a base-vapor diffusion method, which allows to precisely control the growth kinetics. Twenty-four different amorphous CPs colloids were successfully synthesized by selecting 12 metal ions and 17 organic ligands. Moreover, by introducing functional nanoparticles (NPs), a conformal amorphous MOFs coating with controllable thickness can be grown on NPs to form core-shell colloids. The versatility of this amorphous coating technology was demonstrated by synthesizing over 100 core-shell composites from 20 amorphous CPs shells and over 30 different NPs. Besides, various multifunctional nanostructures, such as conformal yolk-amorphous MOF shell, core@metal oxides, and core@carbon, can be obtained through one-step transformation of the core@amorphous MOFs. This work significantly enriches the Stöber method and introduces a platform, enabling the systematic design of colloids exhibiting different level of functionality and complexity.
Contextual and individual inequalities in breast cancer screening participation and outcomes in Turin (North-West Italy)
Authors: Di Girolamo Chiara , Cammarata Giulio , Giordano Livia , Zengarini Nicolás , Ferracin Elisa , Vergini Viviana , Ferrante Gianluigi , Ricceri Fulvio
Published: June 2024

Breast cancer incidence and screening participation exhibit an unequal distribution in the population. This study aims to investigate the impact of socioeconomic position (SEP) on three breast screening indicators (participation, recall, and cancer detection rates) among women aged 50–69 in the city of Turin between 2010 and 2019. The study also aims to determine whether contextual factors (deprivation index) or individual factors (educational level) have a greater influence. The data used in this study are sourced from the Turin Breast Screening Program (TBSP) and the Turin Longitudinal Study (TLS). To test the hypothesis and account for the hierarchical structure of the data, multilevel models were used. Both contextual and individual SEP were found to be associated with screening participation. Participation increased with higher levels of deprivation (odds ratio for most deprived: 1.13; 95% CI 1.11–1.16) and decreased with higher educational levels (OR for low educated: 1.37; 95% CI 1.34–1.40). Contextual SEP did not show any association with recall or cancer detection rates, but individual SEP had an impact. Women with lower educational levels had a statistically significant 19% lower odds of being recalled and a statistically significant 20% lower odds of being diagnosed with cancer. Additionally, immigrant women were less likely to participate in screening, be recalled, or receive a cancer diagnosis. Educational level consistently influenced the analyzed screening indicators, while contextual deprivation appeared to have less importance. It is likely that women living in less deprived areas and with higher education have greater access to opportunistic screening.
Can we measure whether asthma guidelines lead to improved care?
Authors: Tan Ronnie , Murphy Anna , Brightling Chris , Shaw Dominick
Published: June 2024

The British Thoracic Society (BTS) and Scottish Intercollege Guidelines Network (SIGN), as well as National Institute for Health and Care Excellence (NICE), have previously produced separate asthma guidance differing in some key aspects in diagnosis and management leading to confusion, potentially hampering guideline dissemination and uptake. While there are inherent challenges, the upcoming release of new joint BTS/SIGN/NICE asthma guidance presents an opportunity to assess guideline adoption and its impact on clinical practice. The use of prescription data via databases such as OpenPrescribing can be used as a surrogate for guideline adoption and potentially linked to clinical outcomes such as hospital episode statistics (HES). The potential recommendation for anti-inflammatory reliever therapy (AIR) and maintenance and reliever therapy (MART) with inhaled corticosteroid/formoterol combination therapy in the next iteration of UK asthma guidance will require the accurate coding for the respective therapeutic approaches on prescribing platforms in order to assess their impact in real-life clinical practice. This could then direct targeted measures to improve wider guidance adoption leading to better clinical care in asthma based on up to date evidence.
A multimodal physiological and psychological dataset for human with mental stress induced myocardial ischemia
Authors: Peng Xiaoting , Li Dantong , Quan Jun , Wu Chao , Li Huixian , Liu Entao , Hu Lianting , Huang Shuai , Kong Lingcong , Chen Xuanhui , Yang Huan , Liang Huiying , Wang Shuxia , Ma Huan , Geng Qingshan
Published: June 2024

Accurate differentiation between angina with no obstructive coronary arteries (ANOCA) and mental stress-induced myocardial ischemia (MSIMI) is crucial for tailored treatment strategies, yet public data scarcity hampers understanding. Given the higher incidence of both conditions in women, this study prospectively enrolled 80 female ANOCA and 39 age-matched female controls, subjecting them to three types of mental stress tasks. ECGs were continuously monitored across Rest, Stress, and Recover stages of the mental stress tasks, with PET/CT imaging during the Stress stage to evaluate myocardial perfusion. With PET/CT serving as the gold standard for MSIMI diagnosis, 35 of the 80 ANOCA patients were diagnosed as MSIMI. Using ECG variables from different stages of mental stress tasks, we developed five machine learning models to diagnose MSIMI. The results showed that ECG data from different stages provide valuable information for MSIMI classification. Additionally, the dataset encompassed demographic details, physiological, and blood sample test results of the patients. We anticipate this new dataset will significantly push further progress in ANOCA and MSIMI research.
In-ice light measurements during the MOSAiC expedition
Authors: Fuchs Niels , Anhaus Philipp , Hoppmann Mario , Kagel Torbjoern , Katlein Christian , Reese Ronja , Riemenschneider Leif , Tao Ran , Winkelmann Ricarda , Notz Dirk
Published: June 2024

Abstracts

We present light measurements in Arctic sea ice obtained during the year-long MOSAiC drift through the central Arctic Ocean in 2019–2020. Such measurements are important as sea ice plays a fundamental role in the Arctic climate and ecosystem. The partitioning of solar irradiance determines the availability of radiation energy for thermodynamic processes and primary productivity. However, observations of light partitioning along the vertical path through the ice are rare. The data we present were collected by two measurement systems, the lightharp and the lightchain, both measuring autonomously multi-spectral light intensity in different depths within the ice. We present the dataset, retrieval methods for derived optical properties, and the conversion into the final, freely available data product, following standardized conventions. We particularly focus on the specifications of the newly developed lightharp system. Combined with the interdisciplinary and multi-instrument setup of MOSAiC, we expect great potential of the dataset to foster our understanding of light transmission and reflection in the sea-ice cover and interactions with physical sea-ice properties and the polar ecosystem.
A High-Resolution Digital Bathymetric Elevation Model Derived from ICESat-2 for Adam’s Bridge
Authors: Dandabathula Giribabu , Hari Rohit , Sharma Jayant , Sharma Aryan , Ghosh Koushik , Padiyar Niyati , Poonia Anisha , Bera Apurba Kumar , Srivastav Sushil Kumar , Chauhan Prakash
Published: June 2024

This data descriptor elaborates the details of a high-resolution digital bathymetric elevation model generated for the region, namely, Adam’s Bridge, which encompasses a chain of shoals between Rameswaram Island, off the southeastern coast of Tamil Nadu, India, and Mannar Island, off the northwestern coast of Sri Lanka. The proposed dataset has taken advantage of the photon penetrability in the shallow waters by the green laser of ICESat-2 LiDAR to derive the seabed topography. Seafloor depths from ~0.2 million geolocated photons of ICESat-2 for the study area were accrued and interpolated to generate a 10 m digital bathymetric elevation model. Adam’s Bridge, an isthmus and submerged reefal assemblage in shallow and super-shallow waters, is a feature of scientific curiosity. Our dataset has the potential to enhance the understanding of Adam’s Bridge structure by providing substantial information to reconstruct its evolution.
Integrated machine learning algorithms reveal a bone metastasis-related signature of circulating tumor cells in prostate cancer
Authors: Ren Congzhe , Chen Xiangyu , Hao Xuexue , Wu Changgui , Xie Lijun , Liu Xiaoqiang
Published: June 2024

Bone metastasis is an essential factor affecting the prognosis of prostate cancer (PCa), and circulating tumor cells (CTCs) are closely related to distant tumor metastasis. Here, the protein-protein interaction (PPI) networks and Cytoscape application were used to identify diagnostic markers for metastatic events in PCa. We screened ten hub genes, eight of which had area under the ROC curve (AUC) values > 0.85. Subsequently, we aim to develop a bone metastasis-related model relying on differentially expressed genes in CTCs for accurate risk stratification. We developed an integrative program based on machine learning algorithm combinations to construct reliable bone metastasis-related genes prognostic index (BMGPI). On the basis of BMGPI, we carefully evaluated the prognostic outcomes, functional status, tumor immune microenvironment, somatic mutation, copy number variation (CNV), response to immunotherapy and drug sensitivity in different subgroups. BMGPI was an independent risk factor for disease-free survival in PCa. The high risk group demonstrated poor survival as well as higher immune scores, higher tumor mutation burden (TMB), more frequent co-occurrence mutation, and worse efficacy of immunotherapy. This study highlights a new prognostic signature, the BMGPI. BMGPI is an independent predictor of prognosis in PCa patients and is closely associated with the immune microenvironment and the efficacy of immunotherapy.
Four years monitoring of the endangered European plethodontid salamanders
Authors: Coppari Luca , Di Gregorio Milos , Corti Claudia , Merilli Stefano , Mulargia Manuela , Cogoni Roberto , Manenti Raoul , Ficetola Gentile Francesco , Lunghi Enrico
Published: June 2024

The ongoing biodiversity crisis is strongly threatening amphibians, mostly because of their peculiar physiology, their sensitivity to climate change and the spread of diseases. Effective monitoring involving assessments of pressure effects across time and estimation of population trends play a key role in mitigating amphibian decline. To improve implementation of standardized protocols and conservation efforts, we present here a dataset related to one of the amphibian genera whose onservation status is considered the most declining according to the IUCN. We report information on 66 populations of the endangered European cave salamanders, genus Speleomantes, that was collected through a standardized monitoring along a four-year period (2021–2024). Demographics data of the populations and fitness-related data of single individuals are reported. Furthermore, we include 3,836 high quality images of individuals that can allow to perform studies aiming to assess the phenotypic variability within the genus, and to perform long-term capture-mark-recaptured studies.
Leveraging browse and grazing forage estimates to optimize index-based livestock insurance
Authors: Kahiu Njoki , Anchang J. , Alulu V. , Fava F. P. , Jensen N. , Hanan N. P.
Published: June 2024

African pastoralists suffer recurrent droughts that cause high livestock mortality and vulnerability to climate change. The index-based livestock insurance (IBLI) program offers protection against drought impacts. However, the current IBLI design relying on the normalized difference vegetation index (NDVI) may pose limitation because it does not consider the mixed composition of rangelands (including herbaceous and woody plants) and the diverse feeding habits of grazers and browsers. To enhance IBLI, we assessed the efficacy of utilizing distinct browse and grazing forage estimates from woody LAI (LAIW) and herbaceous LAI (LAIH), respectively, derived from aggregate leaf area index (LAIA), as an alternative to NDVI for refined IBLI design. Using historical livestock mortality data from northern Kenya as reference ground dataset, our analysis compared two competing models for (1) aggregate forage estimates including sub-models for NDVI, LAI (LAIA); and (2) partitioned biomass model (LAIP) comprising LAIH and LAIW. By integrating forage estimates with ancillary environmental variables, we found that LAIP, with separate forage estimates, outperformed the aggregate models. For total livestock mortality, LAIP yielded the lowest RMSE (5.9 TLUs) and higher R2 (0.83), surpassing NDVI and LAIA models RMSE (9.3 TLUs) and R2 (0.6). A similar pattern was observed for species-specific livestock mortality. The influence of environmental variables across the models varied, depending on level of mortality aggregation or separation. Overall, forage availability was consistently the most influential variable, with species-specific models showing the different forage preferences in various animal types. These results suggest that deriving distinct browse and grazing forage estimates from LAIP has the potential to reduce basis risk by enhancing IBLI index accuracy.
Enhancing interoceptive sensibility through exteroceptive–interoceptive sensory substitution
Authors: Goral Oran , Wald Iddo Yehoshua , Maimon Amber , Snir Adi , Golland Yulia , Goral Aviva , Amedi Amir
Published: June 2024

Exploring a novel approach to mental health technology, this study illuminates the intricate interplay between exteroception (the perception of the external world), and interoception (the perception of the internal world). Drawing on principles of sensory substitution, we investigated how interoceptive signals, particularly respiration, could be conveyed through exteroceptive modalities, namely vision and hearing. To this end, we developed a unique, immersive multisensory environment that translates respiratory signals in real-time into dynamic visual and auditory stimuli. The system was evaluated by employing a battery of various psychological assessments, with the findings indicating a significant increase in participants' interoceptive sensibility and an enhancement of the state of flow, signifying immersive and positive engagement with the experience. Furthermore, a correlation between these two variables emerged, revealing a bidirectional enhancement between the state of flow and interoceptive sensibility. Our research is the first to present a sensory substitution approach for substituting between interoceptive and exteroceptive senses, and specifically as a transformative method for mental health interventions, paving the way for future research.
Choice of reaction progress variable under preferential diffusion effects in turbulent syngas combustion based on detailed chemistry direct numerical simulations
Authors: Wehrmann Vinzenz Silvester , Chakraborty Nilanjan , Klein Markus , Hasslberger Josef
Published: June 2024

The combustion of hydrogen and carbon-monoxide mixtures, so-called syngas, plays an increasingly important role in the safety context of non-fossil energy generation, more specifically in the risk management of incidents in process engineering plants for ammonia synthesis and in nuclear power plants. In order to characterize and simulate syngas/air combustion on industrially relevant scales, subgrid modelling is required, which is often based on a reaction progress variable. To understand the influence of different fuel compositions, turbulence intensities and flame topologies on different possible definitions of reaction progress variable, detailed chemistry direct numerical simulations data of premixed, lean hydrogen/air and syngas/air flames has been considered. A reaction progress variable based on normalized molecular oxygen mass fraction has been found not to capture the augmentation of the normalized burning rate per unit flame surface area in comparison to the corresponding 1D unstretched premixed flame due to preferential diffusion effects. By contrast, reaction progress variables based on other individual species, such as hydrogen, can capture the augmentation of the rate of burning well, but exhibit a pronounced sensitivity to preferential diffusion effects, especially in response to flame curvatures. However, a reaction progress variable based on the linear combination of the main products can accurately represent the temperature evolution of the flame for different mixtures, turbulence intensities and varying local flame topology, while effectively capturing the augmentation of burning rate due to preferential diffusion effects. However, its tendency to assume values larger than 1.0 in the regions of super-adiabatic temperatures poses challenges for future modeling approaches, whereas the reaction progress variable based on hydrogen mass fraction remains bound between 0.0 and 1.0 despite showing deviations in comparison to corresponding variations obtained from the unstretched laminar flame depending on flame curvature variations.
Urinary albumin creatinine ratio is associated with lipid profile
Authors: Hwang Sang Won , Lee Taesic , Uh Young , Lee Jun Young
Published: June 2024

Moderately elevated albuminuria (30–300 mg/g) is a marker of renal dysfunction and a risk factor of cardiovascular disease. Additionally, several recent studies have reported a relationship between moderately elevated albuminuria and triglyceride (TG) levels. Therefore, we aimed to evaluate the relationship between the urine albumin-to-creatinine ratio (UACR) and total cholesterol (TC), TG, and high-density lipoprotein C (HDL-C) levels. We analyzed data from 19,340 patients from the 2011–2014 and 2019–2020 from the Korea National Health and Nutrition Examination Surveys. Multivariate linear regression analysis showed that the UACR was positively associated with TC and TG levels and negatively associated with HDL-C levels in both Korean women and men. These results were reanalyzed according to the degree of proteinuria (normal, moderately elevated albuminuria, and severely elevated albuminuria (≥ 300 mg/g)). We found a positive relationship between UACR and TC and TG levels, but a negative association with HDL-C levels, except for TC (moderately elevated albuminuria) and HDL-C (moderately elevated albuminuria) in Korean men and TC (severely elevated albuminuria), TG (severely elevated albuminuria), and HDL-C (normal range albuminuria) in Korean women. The correlation between albuminuria and lipid profiles became more evident as albuminuria shift from normal to the severely elevated albuminuria. Thus our multivariate linear regression analysis showed that lipid profiles (TG, TC, and HDL-C levels) were associated with the UACR.
Non-mechanical steering of the optical beam in spectral-domain optical coherence tomography
Authors: Urrego Daniel F. , Machado Gerard J. , Torres Juan P.
Published: June 2024

We demonstrate in a proof-of-concept experiment spectral-domain optical coherence tomography where steering of the optical beam that probes the sample in a transverse scan does not make use of any mechanical element. Steering is done with the help of a phase-only spatial light modulator, that introduces a spatially-dependent phase between the two orthogonal polarization components of an optical beam, and some optical elements that control the polarization of light. We demonstrate that making use of the non-mechanical beam steering system considered here, we can reproduce the main traits of imaging with standard OCT that makes use of mechanical-assisted optical beam steering.
Production of norovirus-, rotavirus-, and enterovirus-like particles in insect cells is simplified by plasmid-based expression
Authors: Lampinen Vili , Gröhn Stina , Lehmler Nina , Jartti Minne , Hytönen Vesa P. , Schubert Maren , Hankaniemi Minna M.
Published: June 2024

Insect cells have long been the main expression host of many virus-like particles (VLP). VLPs resemble the respective viruses but are non-infectious. They are important in vaccine development and serve as safe model systems in virus research. Commonly, baculovirus expression vector system (BEVS) is used for VLP production. Here, we present an alternative, plasmid-based system for VLP expression, which offers distinct advantages: in contrast to BEVS, it avoids contamination by baculoviral particles and proteins, can maintain cell viability over the whole process, production of alphanodaviral particles will not be induced, and optimization of expression vectors and their ratios is simple. We compared the production of noro-, rota- and entero-VLP in the plasmid-based system to the standard process in BEVS. For noro- and entero-VLPs, similar yields could be achieved, whereas production of rota-VLP requires some further optimization. Nevertheless, in all cases, particles were formed, the expression process was simplified compared to BEVS and potential for the plasmid-based system was validated. This study demonstrates that plasmid-based transfection offers a viable option for production of noro-, rota- and entero-VLPs in insect cells.
Sexual violence among female survivors in Goma, in the Democratic Republic of the Congo: epidemiology, clinical features, and circumstances of occurrence
Authors: Kiakuvue Yannick Nkiambi , Kanyere Furaha Siwatula , Mukubu Doris Mwila , Ruhindiza Bienvenu Mukuku , Mukuku Olivier
Published: June 2024

Sexual violence (SV) is a major public health issue in Goma, Democratic Republic of the Congo, especially in the eastern part of the country where women have been victims of SV for many years. The objective of this study is to provide an overview of the survivor and perpetrator characteristics, as well as the circumstances surrounding SV incidents in Goma. We conducted a retrospective, descriptive cross-sectional study using data from all SV survivors who sought medical care at four hospitals in Goma from January 2019 to December 2020. The analysis of the data was carried out using STATA 16 software. A total of 700 women sought medical attention for SV in the four hospitals. The survivors’ age range was 12–67 years with a mean age of 31.7 ± 14.6 years. Women aged 20–29 years were the most affected (28%). The majority of SV survivors experienced their first assault (88.29%) and sought medical attention within 72 h (60.6%). The assaults occurred mostly outside the SV survivors’ homes under armed threat (84.29%), predominantly by men in civilian clothes (61.43%) compared to men in military uniform (38.57%). More than half of the survivors were assaulted by a stranger (64.71%), and of those, more than half were committed by a single perpetrator (57.29%). The findings underscore the urgent need to address this pervasive issue, emphasizing the necessity of targeted interventions to protect survivors and prevent future incidents. The circumstances surrounding these assaults, such as the prevalence of armed threats and attacks outside survivors’ homes, highlight the complex challenges in combating SV in this region.
Growth of bulk β-Ga2O3 crystals from melt without precious-metal crucible by pulling from a cold container
Authors: Yoshikawa A. , Kochurikhin V. , Tomida T. , Takahashi I. , Kamada K. , Shoji Y. , Kakimoto K.
Published: June 2024

We report the growth of bulk β-Ga2O3 crystals based on crystal pulling from a melt using a cold container without employing a precious-metal crucible. Our approach, named oxide crystal growth from cold crucible (OCCC), is a fusion between the skull-melting and Czochralski methods. The absence of an expensive precious-metal crucible makes this a cost-effective crystal growth method, which is a critical factor in the semiconductor industry. An original construction 0.4–0.5 MHz SiC MOSFET transistor generator with power up to 35 kW was used to successfully grow bulk β-Ga2O3 crystals with diameters up to 46 mm. Also, an original diameter control system by generator frequency change was applied. In this preliminary study, the full width at half maximum of the X-ray rocking curve from the obtained β-Ga2O3 crystals with diameters ≤ 46 mm was comparable to those of β-Ga2O3 produced by edge-defined film fed growth. Moreover, as expected, the purity of the obtained crystals was high because only raw material-derived impurities were detected, and contamination from the process, such as insulation and noble metals, was below the detection limit. Our results indicate that the OCCC technique can be used to produce high-purity bulk β-Ga2O3 single crystalline substrate.
Predicting the bodily self in space and time
Authors: de Boer D. M. L. , Johnston P. J. , Namdar F. , Kerr G. , Cleeremans A.
Published: June 2024

To understand how the human brain distinguishes itself from external stimulation, it was examined if motor predictions enable healthy adult volunteers to infer self-location and to distinguish their body from the environment (and other agents). By uniquely combining a VR-setup with full-body motion capture, a full-body illusion paradigm (FBI) was developed with different levels of motion control: (A) a standard, passive FBI in which they had no motion control; (B) an active FBI in which they made simple, voluntary movements; and (C) an immersive game in which they real-time controlled a human-sized avatar in third person. Systematic comparisons between measures revealed a causal relationship between (i) motion control (prospective agency), (ii) self-other identification, and (iii) the ability to locate oneself. Healthy adults could recognise their movements in a third-person avatar and psychologically align with it (action observation); but did not lose a sense of place (self-location), time (temporal binding), nor who they are (self/other). Instead, motor predictions enabled them to localise their body and to distinguish self from other. In the future, embodied games could target and strengthen the brain’s control networks in psychosis and neurodegeneration; real-time motion simulations could help advance neurorehabilitation techniques by fine-tuning and personalising therapeutic settings.
Implications of unconventional histological subtypes on magnetic resonance imaging and oncological outcomes in patients who have undergone radical prostatectomy
Authors: Kurokawa Koichiro , Yamada Yasutaka , Sakamoto Shinichi , Horikoshi Takuro , Sato Kodai , Nanba Sakie , Kubota Yoshihiro , Kanesaka Manato , Fujimoto Ayumi , Takeuchi Nobuyoshi , Shibata Hiroki , Sazuka Tomokazu , Imamura Yusuke , Tsuzuki Toyonori , Uno Takashi , Ichikawa Tomohiko
Published: June 2024

The prognostic significance of unconventional histology (UH) subtypes including intraductal carcinoma of the prostate (IDC-P), ductal adenocarcinoma, and cribriform pattern has been investigated for prostate cancer (PCa). However, little is known about magnetic resonance imaging (MRI) features and the oncological impact of tumor localization in localized PCa with UH. Clinical data of 211 patients with acinar adenocarcinoma (conventional histology [CH]) and 82 patients with UH who underwent robotic-assisted radical prostatectomy (RARP) were reviewed. Patients with UH are more likely to be older and have higher Gleason grade group, higher Prostate Imaging-Reporting and Data System (PI-RADS) v2.1 score, and larger tumor volume (TV) than those with CH. Multivariate analysis identified the presence of UH as an independent prognostic factor for progression-free survival (PFS) (hazard ration (HR) 2.41, 95% confidence interval (CI) 0.22–0.79, P = 0.0073). No significant difference in PFS was seen regarding tumor localization (transition zone [TZ] or peripheral zone [PZ]) in patients with UH (P = 0.8949), whereas PZ cancer showed shorter PFS in patients with CH (P = 0.0174). PCa with UH was associated with higher progression than PCa with CH among resection margin (RM)-negative cases (P < 0.0001). Further, increased PI-RADS v2.1 score did not correlate with larger TV in UH (P = 0.991), whereas a significant difference in TV was observed in CH (P < 0.0001). The prognostic significance of UH tumor was independent of tumor localization, and shorter PFS was observed even in RM-negative cases, indicating an aggressive subtype with micro-metastatic potential. Furthermore, UH tumors are more likely to harbor a large TV despite PI-RADS v2.1 score ≤ 3. These findings will help optimal perioperative management for PCa with UH.
The structural evolution of undisturbed loess due to water infiltration
Authors: Zhuang Jianqi , Kong Jiaxu , Zhu Yi , Peng Jianbing
Published: June 2024

Loess structure is the physical key factor that determines its stability and consists of macro-pores, loose texture, and water sensitivity. The structural change characteristics and effects of the undisturbed loess before and after water infiltration are studied using mechanical CT and simulation tests in order to study the structural change process within the undisturbed loess caused by water infiltration. The change in particle state is as follows: the peak frequency point of the equivalent diameter of the loess particles after infiltration ranged from 16.75 to 23.76 μm, and the eroded fine particles consisted primarily of fine particles. The smaller loess particles are removed by water infiltration resulting in coarsening of soil particles. The sphericity of the loess particles gradually changes from spherical pores to angular and dendritic pores. The particle inclination angle transitions to a range greater than 70°, and its proportion is approximately 61%. The change in pore structure is as follows: The loess porosity after infiltration increased by approximately 20%, and the increase in the pore area ratio of the mesopores and the macropores was higher than that of the micropores. Additionally, the small pores increased by more than 5 times the original state of the undisturbed loess. The connected pores expanded less than 60% of the initial state to more than 90% after infiltration, thus, increasing the dominant seepage channel of the undisturbed loess. These changes in particle and porosity further increase the water filtration intensity and promote the migration of fine particles (mainly silt particles), linking loess catastrophes and are the leading cause of loess settlement and slope instability. The process of water infiltration into the loess, the mechanism of loess collapsibility, and the influence of salinity on the loess structure and strength are discussed in this study.
Evaluation of the outcomes of biliary-enteric reconstruction in robotic radical resection of hilar cholangiocarcinoma: a single-center propensity score matching analysis
Authors: Liu Jie , Dou Changwei , Chen Jian , Lu Yi , Liang Lei , Wei Fangqiang , Zhang Chengwu
Published: June 2024

Although robotic radical resection for hilar cholangiocarcinoma (HCCA) has been reported in some large hepatobiliary centers, biliary-enteric reconstruction (BER) remains a critical step that hampers the operation’s success. This study aimed to evaluate the feasibility and quality of BER in robotic radical resection of HCCA and propose technical recommendations. A retrospective study was conducted on patients with HCCA who underwent minimally invasive radical resection at Zhejiang Provincial People’s Hospital between January 2016 and July 2023. A 1:2 propensity score matching (PSM), widely used to reduce selection bias, was performed to evaluate the outcomes, especially BER-related data, between the robotic and laparoscopic surgery. Forty-six patients with HCCA were enrolled; ten underwent robotic-assisted resection, while the others underwent laparoscopic surgery. After PSM at a ratio of 1:2, 10 and 20 patients were assigned to the robot-assisted and laparoscopic groups, respectively. The baseline characteristics of both groups were generally well-balanced. The average liver resection time was longer in the robotic group than in the laparoscopic group (139.5 ± 38.8 vs 108.1 ± 35.8 min, P = 0.036). However, the former had less intraoperative blood loss [200 (50–500) vs 310 (100–850) ml], despite no statistical difference (P = 0.109). The number of residual bile ducts was 2.6 ± 1.3 and 2.7 ± 1.2 (P = 0.795), and anastomoses were both 1.6 ± 0.7 in the two groups (P = 0.965). The time of BER was 38.4 ± 13.6 and 59.1 ± 25.5 min (P = 0.024), accounting for 9.9 ± 2.8% and 15.4 ± 4.8% of the total operation time (P = 0.001). Although postoperative bile leakage incidence in laparoscopic group (40%) was higher than that in robotic group (10%), there was no significant difference between the two groups (P = 0.204); 6.7 ± 4.4 and 12.1 ± 11.7 days were observed for tube drawing (P = 0.019); anastomosis stenosis and calculus rate was 10% and 30% (P = 0.372), 0% and 15% (P = 0.532), respectively. Neither group had hemorrhage- or bile leakage-related deaths. Robotic radical resection for HCCA may offer perioperative outcomes comparable to conventional laparoscopic procedures and tends to be advantageous in terms of anastomosis time and quality. We are optimistic about its wide application in the future with the improvement of surgical techniques and experience.
Polybenzimidazole dispersed polymer coated nanowires as efficient electrolytes for proton exchange membrane fuel cells
Authors: Abd Elkodous M. , Maegawa Keiichiro , Matsuda Atsunori
Published: June 2024

In this study, polymer-coated anisotropic inorganic nanowires dispersed in PBI matrix were introduced to construct 1D proton conducting channels within PBI. Ionic-liquid and solvothermal methods were used for the synthesis of ZrO2 and W18O49 NWs, which were coated with PVPA and PDDA polymers to increase their proton conductivity. Our results showed that, prepared membranes have amorphous nature due to the dominating presence of PBI. SEM analysis revealed the average thickness of membrane of about 36 µm. TG/DTA analysis detected lower weight loss of W18O49 NWs (total 2.8%) compared to ZrO2 NWs (18%). Proton conductivity analysis showed that, PDDA/W18O49 NWs possess relatively 4 times higher proton conductivity (4$$ \times $$
×
10−4 Scm−1) compared to PDDA/ZrO2 NWs (1$$ \times $$
×
10−4 Scm−1) at 80 ℃. In addition, PDDA-coated W18O49 NWs dispersed PBI membranes showed the highest fuel cell current density (1.2 A/cm2) and power density (215 mW/cm2) at 150 ℃ after 24 h which is nearly 2.5 times higher than pure PBI membrane. In addition, they exhibited the lowest in-situ proton resistance of about (0.47 Ω) compared with that of pure PBI membrane (0.8 Ω). Our results are introducing new concepts towards the development of thin and efficient polymer electrolyte membranes for PEM fuel cells.
Regulation of endocrine cell alternative splicing revealed by single-cell RNA sequencing in type 2 diabetes pathogenesis
Authors: Wang Jin , Wen Shiyi , Chen Minqi , Xie Jiayi , Lou Xinhua , Zhao Haihan , Chen Yanming , Zhao Meng , Shi Guojun
Published: June 2024

The prevalent RNA alternative splicing (AS) contributes to molecular diversity, which has been demonstrated in cellular function regulation and disease pathogenesis. However, the contribution of AS in pancreatic islets during diabetes progression remains unclear. Here, we reanalyze the full-length single-cell RNA sequencing data from the deposited database to investigate AS regulation across human pancreatic endocrine cell types in non-diabetic (ND) and type 2 diabetic (T2D) individuals. Our analysis demonstrates the significant association between transcriptomic AS profiles and cell-type-specificity, which could be applied to distinguish the clustering of major endocrine cell types. Moreover, AS profiles are enabled to clearly define the mature subset of β-cells in healthy controls, which is completely lost in T2D. Further analysis reveals that RNA-binding proteins (RBPs), heterogeneous nuclear ribonucleoproteins (hnRNPs) and FXR1 family proteins are predicted to induce the functional impairment of β-cells through regulating AS profiles. Finally, trajectory analysis of endocrine cells suggests the β-cell identity shift through dedifferentiation and transdifferentiation of β-cells during the progression of T2D. Together, our study provides a mechanism for regulating β-cell functions and suggests the significant contribution of AS program during diabetes pathogenesis.