bluuebunny/crossref_metadata_2025 huggingface dataset:
Exploring Causes of Depression and Anxiety Health Disparities (HD) by Examining Differences between 1:1 Matched Individuals
Authors: Coman Emil N. , Wu Helen Z. , Assari Shervin
Published: November 2018

Poor comparability of social groups is one of the major methodological problems that threatens the validity of health disparities (HD) research findings. We illustrate a methodological solution that can additionally unpack the mechanisms behind differential effects on depression and anxiety. We describe racial/ethnic differences in the prevalence of depression and anxiety scores between Black and White women using classic methods, and then we illustrate a 1:1 matching procedure that allows for building of individual-level difference scores, i.e., actual HD difference score variables, for each pair of comparable participants. We compare the prevalence of depression disorder between Black and White young women after matching them 1:1 on common socio-economic characteristics (age, employment, education, and marital status). In essence, we follow matching or stratification methods, but make a step further and match cases 1:1 on propensity scores, i.e., we create Black–White ‘dyads’. Instead of concluding from plain comparisons that 11% more White young women (18–30 years old) report a depressive disorder than Black young women, the matched data confirms the trend, but provides more nuances. In 27% of the pairs of comparable pairs the White woman was depressed (and the comparable Black woman was not), while in 15% of the pairs the Black woman was depressed (and the comparable White woman was not). We find that Black-to-White disparities in neighborhood disorder do not predict depression differences (HDs), while such an effect is evident for anxiety HDs. The 1:1 matching approach allows us to examine more complex HD effects, like differential mediational or resilience mechanisms that appear to be protective of Black women’s mental health.
Cancer-Specific Biomarker hNQO1-Activatable Fluorescent Probe for Imaging Cancer Cells In Vitro and In Vivo
Authors: Punganuru Surendra Reddy , Madala Hanumantha Rao , Arutla Viswanath , Srivenugopal Kalkunte S.
Published: November 2018

Human NAD(P)H quinone oxidoreductase-1 (hNQO1) is an important cancer-related biomarker, which shows significant overexpression in malignant cells. Developing an effective method for detecting NQO1 activity with high sensitivity and selectivity in tumors holds a great potential for cancer diagnosis, treatment, and management. In the present study, we report a new dicyanoisophorone (DCP) based fluorescent probe (NQ-DCP) capable of monitoring hNQO1 activity in vitro and in vivo in both ratiometric and turn-on model. NQ-DCP was prepared by conjugating dicyanoisophorone fluoroprobe with hNQO1 activatable quinone propionic acid (QPA), which remain non-fluorescent until activation by tumor-specific hNQO1. NQ-DCP featured a large Stokes shift (145 nm), excellent biocompatibility, cell permeability, and selectivity towards hNQO1 allowed to differentiate cancer cells from healthy cells. We have successfully employed NQ-DCP to monitor non-invasive endogenous hNQO1 activity in brain tumor cells in vitro and in xenografted tumors developed in nude mice.
Asymmetric and Selective Biocatalysis
Authors: Mateo Cesar , Palomo Jose M.
Published: November 2018

The synthesis of compounds or chiral building-blocks with the desired configuration is one of the greatest challenges of chemistry and is of great interest in different fields such as analytical chemistry and especially in fine and pharmaceutical chemistry. [...]
Screening of a Novel Glycoside Hydrolase Family 51 α-L-Arabinofuranosidase from Paenibacillus polymyxa KF-1: Cloning, Expression, and Characterization
Authors: Hu Yanbo , Zhao Yan , Tian Shuang , Zhang Guocai , Li Yumei , Li Qiang , Gao Juan
Published: November 2018

Paenibacillus polymyxa exhibits remarkable hemicellulolytic activity. In the present study, 13 hemicellulose-degrading enzymes were identified from the secreted proteome of P. polymyxa KF-1 by liquid chromatography-tandem mass spectrometry analysis. α-L-arabinofuranosidase is an important member of hemicellulose-degrading enzymes. A novel α-L-arabinofuranosidase (PpAbf51b), belonging to glycoside hydrolase family 51, was identified from P. polymyxa. Recombinant PpAbf51b was produced in Escherichia coli BL21 (DE3) and was found to be a tetramer using gel filtration chromatography. PpAbf51b hydrolyzed neutral arabinose-containing polysaccharides, including sugar beet arabinan, linear-1,5-α-L-arabinan, and wheat arabinoxylan, with L-arabinose as the main product. The products from hydrolysis indicate that PpAbf51b functions as an exo-α-L-arabinofuranosidase. Combining PpAbf51b and Trichoderma longibrachiatum endo-1,4-xylanase produced significant synergistic effects for the degradation of wheat arabinoxylan. The α-L-arabinofuranosidase identified from the secretome of P. polymyxa KF-1 is potentially suitable for application in biotechnological industries.
Compositing Two-Dimensional Materials with TiO2 for Photocatalysis
Authors: Ren Yu , Dong Yuze , Feng Yaqing , Xu Jialiang
Published: November 2018

Energy shortage and environmental pollution problems boost in recent years. Photocatalytic technology is one of the most effective ways to produce clean energy—hydrogen and degrade pollutants under moderate conditions and thus attracts considerable attentions. TiO2 is considered one of the best photocatalysts because of its well-behaved photo-corrosion resistance and catalytic activity. However, the traditional TiO2 photocatalyst suffers from limitations of ineffective use of sunlight and rapid carrier recombination rate, which severely suppress its applications in photocatalysis. Surface modification and hybridization of TiO2 has been developed as an effective method to improve its photocatalysis activity. Due to superior physical and chemical properties such as high surface area, suitable bandgap, structural stability and high charge mobility, two-dimensional (2D) material is an ideal modifier composited with TiO2 to achieve enhanced photocatalysis process. In this review, we summarized the preparation methods of 2D material/TiO2 hybrid and drilled down into the role of 2D materials in photocatalysis activities.
Fabricating MOF/Polymer Composites via Freeze Casting for Water Remediation
Authors: Rogers Coral , Pun Daniel , Fu Qingshan , Zhang Haifei
Published: November 2018

Various porous materials have been used as adsorbents for water remediation. Among them, metal-organic framework (MOF) particles have been explored intensively, due to their size-controlled micropores and high surface areas. MOF nanoparticles are often used because of high external surface area and easy access to the micropores. However, recovering MOF nanoparticles, usually by filtration or centrifugation, is time-consuming and is difficult to scale up. We report here the preparation of porous MOF/polymer monoliths by freeze casting for water remediation. Chitosan and UiO-66 (Universitetet i Oslo) nanoparticles (including different surface functional groups) are used to prepare such monoliths. In order to improve the mechanical stability and the tendency of disintegrating in water, the freeze-dried UiO-66/chitosan monoliths are further treated by heating, washing with aqueous NaOH solution, or chemical crosslinking with glutaraldehyde. All these treated monoliths are used for adsorption of a herbicide methylchlorophenoxypropionic acid (MCPP) from aqueous solution. Particularly, the crosslinked chitosan/UiO-66 monolith achieves an adsorption capacity of 47.67 mg g−1, with a 60 ppm MCPP solution. It is superior to that presented by the sole UiO-66 nanoparticles, exhibiting over a 30% increase in the adsorption capacity. The monoliths can be easily removed using tweezers, providing facile recyclability, which is advantageous for upscaling. The recycled monolith upheld approximately 75% of the adsorption capacity compared to the original monolith after three reuse cycles.
Katalyst Pilot Study: Using Interactive Activities in Anatomy and Physiology to Teach Children the Scientific Foundation of Healthy Lifestyles
Authors: Hagedorn Rebecca L. , Baker Kathryn , DeJarnett Sara E. , Hendricks Tyler , McGowan Melissa , Joseph Lauren , Olfert Melissa D.
Published: November 2018

This pilot study evaluated the impact of the Katalyst curriculum, a fifth-grade experiential learning program, on students’ knowledge of a healthy lifestyle’s impact on body functions. Katalyst’s interactive curriculum spans two days and includes four, 60-min stations on body systems: cardiovascular/endocrine, gastrointestinal, neurological, and respiratory/musculoskeletal. Three schools were recruited, and two schools completed the intervention sessions. Prior to beginning the stations, fifth-grade students completed a 37-item questionnaire to assess knowledge and perceptions. Students completed the same survey at the end of the Katalyst intervention. Teachers at the school also completed a survey post intervention to provide feedback on the program. Frequency and paired analyses were conducted on student responses and summative content analysis on teacher and volunteer feedback. The School 1 completer (n = 63) baseline mean knowledge score was 66.2%. The School 2 completer (n = 47) baseline mean knowledge score was 67.3%. Following the Katalyst intervention, both schools showed a statistically significant increase in the mean post score to 70.3% (p = 0.0017) and 78.4%(p < 0.0001) at School 1 (n = 63) and School 2 (n = 47), respectively. Teacher feedback (n = 7) revealed that Katalyst was effective in meeting state educational health standards and teachers perceived that the students benefitted from the program more than “reading about the body systems in a textbook or health magazine”. The Katalyst pilot study appeared to improve fifth-grade students’ knowledge of body systems and health. Katalyst aligned with state educational standards and is supported by teachers for an experiential learning opportunity. The Katalyst curriculum could be a potential avenue for health educators in Appalachia.
Effect of Transition Metal Substitution on the Charge-Transfer Phase Transition and Ferromagnetism of Dithiooxalato-Bridged Hetero Metal Complexes, (n-C3H7)4N[FeII1−xMnIIxFeIII(dto)3]
Authors: Enomoto Masaya , Ida Hiromichi , Okazawa Atsushi , Kojima Norimichi
Published: November 2018

The dithiooxalato-bridged iron mixed-valence complex (n-C3H7)4N[FeIIFeIII(dto)3] (dto = dithiooxalato) undergoes a novel charge-transfer phase transition (CTPT) accompanied by electron transfer between adjacent FeII and FeIII sites. The CTPT influences the ferromagnetic transition temperature according to the change of spin configuration on the iron sites. To reveal the mechanism of the CTPT, we have synthesized the series of metal-substituted complexes (n-C3H7)4N[FeII1-xMnIIxFeIII(dto)3] (x = 0–1) and investigated their physical properties by means of magnetic susceptibility and dielectric constant measurements. With increasing MnII concentration, x, MnII-substituted complexes show the disappearance of CTPT above x = 0.04, while the ferromagnetic phase remains in the whole range of x. These results are quite different from the physical properties of the ZnII-substituted complex, (n-C3H7)4N[FeII1-xZnIIxFeIII(dto)3], which is attributed to the difference of ion radius as well as the spin states of MnII and ZnII.
Transcriptional Profiles of Secondary Metabolite Biosynthesis Genes and Cytochromes in the Leaves of Four Papaver Species
Authors: Kim Dowan , Jung Myunghee , Ha In Jin , Lee Min Young , Lee Seok-Geun , Shin Younhee , Subramaniyam Sathiyamoorthy , Oh Jaehyeon
Published: November 2018

Poppies are well-known plants in the family Papaveraceae that are rich in alkaloids. This family contains 61 species, and in this study we sequenced the transcriptomes of four species’ (Papaver rhoeas, Papaver nudicaule, Papaver fauriei, and Papaver somniferum) leaves. These transcripts were systematically assessed for the expression of secondary metabolite biosynthesis (SMB) genes and cytochromes, and their expression profiles were assessed for use in bioinformatics analyses. This study contributed 265 Gb (13 libraries with three biological replicates) of leaf transcriptome data from three Papaver plant developmental stages. Sequenced transcripts were assembled into 815 Mb of contigs, including 226 Mb of full-length transcripts. The transcripts for 53 KEGG pathways, 55 cytochrome superfamilies, and benzylisoquinoline alkaloid biosynthesis (BIA) were identified and compared to four other alkaloid-rich genomes. Additionally, 22 different alkaloids and their relative expression profiles in three developmental stages of Papaver species were assessed by targeted metabolomics using LC-QTOF-MS/MS. Collectively, the results are given in co-occurrence heat-maps to help researchers obtain an overview of the transcripts and their differential expression in the Papaver development life cycle, particularly in leaves. Moreover, this dataset will be a valuable resource to derive hypotheses to mitigate an array of Papaver developmental and secondary metabolite biosynthesis issues in the future.
Systematizing Professional Knowledge of Medical Doctors and Teachers: Development of an Interdisciplinary Framework in the Context of Diagnostic Competences
Authors: Förtsch Christian , Sommerhoff Daniel , Fischer Frank , Fischer Martin R. , Girwidz Raimund , Obersteiner Andreas , Reiss Kristina , Stürmer Kathleen , Siebeck Matthias , Schmidmaier Ralf , Seidel Tina , Ufer Stefan , Wecker Christof , Neuhaus Birgit J.
Published: November 2018

Professional knowledge is highlighted as an important prerequisite of both medical doctors and teachers. Based on recent conceptions of professional knowledge in these fields, knowledge can be differentiated within several aspects. However, these knowledge aspects are currently conceptualized differently across different domains and projects. Thus, this paper describes recent frameworks for professional knowledge in medical and educational sciences, which are then integrated into an interdisciplinary two-dimensional model of professional knowledge that can help to align terminology in both domains and compare research results. The models’ two dimensions differentiate between cognitive types of knowledge and content-related knowledge facets and introduces a terminology for all emerging knowledge aspects. The models’ applicability for medical and educational sciences is demonstrated in the context of diagnosis by describing prototypical diagnostic settings for medical doctors as well as for teachers, which illustrate how the framework can be applied and operationalized in these areas. Subsequently, the role of the different knowledge aspects for acting and the possibility of transfer between different content areas are discussed. In conclusion, a possible extension of the model along a “third dimension” that focuses on the effects of growing expertise on professional knowledge over time is proposed and issues for further research are outlined.
Icing Degree Characterization of Insulators Based on the Equivalent Collision Coefficient of Standard Rotating Conductors
Authors: Zhang Zhijin , Zhang Yi , Jiang Xingliang , Hu Jianlin , Hu Qin
Published: November 2018

Due to the complex structure of insulators, it is difficult to use parameters such as icicle length or ice thickness of an insulator to directly characterize the degree of icing of an insulator. Rotating conductors are widely used in monitoring icing degree on insulators, but the relationship between ice degree on the insulator and the rotating conductor has not been verified. In this paper, the water droplets collision coefficient α1 was put forward to characterize icing degree, and a new numerical calculation model where α1 on different regions of an insulator is calculated was proposed. Combining the freezing fraction α3 of the insulator and rotating conductor, the equivalent relationship of ice weight between insulator and rotating conductor can be established, which was afterwards verified through the icing tests. The test results indicate that ice weight on an insulator increases linearly with the increase of ice weight on the rotating conductor, and the model proposed in this paper can reflect actual results more accurately than previous models. In such cases, the method of using ice weight on a rotating conductor to predict that on an insulator based on the model proposed in this paper could be widely adopted.
Advances on Aptamers against Protozoan Parasites
Authors: Ospina-Villa Juan David , López-Camarillo César , Castañón-Sánchez Carlos A. , Soto-Sánchez Jacqueline , Ramírez-Moreno Esther , Marchat Laurence A.
Published: November 2018

Aptamers are single-stranded DNA or RNA sequences with a unique three-dimensional structure that allows them to recognize a particular target with high affinity. Although their specific recognition activity could make them similar to monoclonal antibodies, their ability to bind to a large range of non-immunogenic targets greatly expands their potential as tools for diagnosis, therapeutic agents, detection of food risks, biosensors, detection of toxins, drug carriers, and nanoparticle markers, among others. One aptamer named Pegaptanib is currently used for treating macular degeneration associated with age, and many other aptamers are in different clinical stages of development of evaluation for various human diseases. In the area of parasitology, research on aptamers has been growing rapidly in the past few years. Here we describe the development of aptamers raised against the main protozoan parasites that affect hundreds of millions of people in underdeveloped and developing countries, remaining a major health concern worldwide, i.e. Trypanosoma spp., Plasmodium spp., Leishmania spp., Entamoeba histolytica, and Cryptosporidium parvuum. The latest progress made in this area confirmed that DNA and RNA aptamers represent attractive alternative molecules in the search for new tools to detect and treat these parasitic infections that affect human health worldwide.
Co-differential Gene Selection and Clustering Based on Graph Regularized Multi-View NMF in Cancer Genomic Data
Authors: Yu Na , Gao Ying-Lian , Liu Jin-Xing , Shang Junliang , Zhu Rong , Dai Ling-Yun
Published: November 2018

Cancer genomic data contain views from different sources that provide complementary information about genetic activity. This provides a new way for cancer research. Feature selection and multi-view clustering are hot topics in bioinformatics, and they can make full use of complementary information to improve the effect. In this paper, a novel integrated model called Multi-view Non-negative Matrix Factorization (MvNMF) is proposed for the selection of common differential genes (co-differential genes) and multi-view clustering. In order to encode the geometric information in the multi-view genomic data, graph regularized MvNMF (GMvNMF) is further proposed by applying the graph regularization constraint in the objective function. GMvNMF can not only obtain the potential shared feature structure and shared cluster group structure, but also capture the manifold structure of multi-view data. The validity of the proposed GMvNMF method was tested in four multi-view genomic data. Experimental results showed that the GMvNMF method has better performance than other representative methods.
Assessing the Impact of Reference Evapotranspiration Models on Decision Support Systems for Irrigation
Authors: Olberz Matthias , Kahlen Katrin , Zinkernagel Jana
Published: November 2018

Reference evapotranspiration (E T 0) is a major estimator for crop water requirements predicted by decision support systems for irrigation. However, the impact of different E T 0s on the predicted amount of water supply and counts of irrigation events has not been evaluated. Simulations of the Geisenheim Irrigation Scheduling (GS) for vegetable crops with two different E T 0s, P2-E T 0 and FAO56-E T 0, were evaluated to assess exemplarily the impact of E T 0s. The sensitivity of both E T 0s to local climate conditions was characterized through a random forest analysis, and a linear regression model was used to adjust the original GS by adapting K c-values to the exchange E T 0. For assessing the outcomes of GS irrigation decision, simulations of 173 individual cropping cycles including six vegetable crops over eight years were conducted. After adjusting P2-E T 0 K c-values to FAO56-E T 0 K c-values, there was no impact of the E T 0-model on the practical irrigation scheduling with GS. Finally, we discuss that any E T 0-model, if adjusted accordingly, might have little impact on similar irrigation systems and provide a method to exchange E T 0s.
Biomedical Variables and Adaptation to Disease and Health-Related Quality of Life in Polish Patients with MS
Authors: Dymecka Joanna , Bidzan Mariola
Published: November 2018

The aim of this research was to assess the level of adaptation to multiple sclerosis (Sclerosis multiplex; MS) and health-related quality of life (HRQoL) of the study population as well as to determine the relationship between biomedical factors related to the course of multiple sclerosis, adaptation to the disease, and HRQoL. Analysis of medical records, clinical and psychological interviews, the Extended Disability Status Scale (EDSS), Guy’s Neurological Disability Scale (GNDS), the Acceptance of Illness Scale (AIS), and the Multiple Sclerosis Impact Scale 29 (MSIS-29) were collected from 137 patients with MS. It was found that there was a relation between motor impairment, neurological disability, adaptation to illness, and HRQoL; it was also found that there were negative correlations between adaptation to illness and the severity of lower-limb disability, fatigue, mood disorders, other problems related to MS, and upper-limb disability. Of all the symptoms, lower-limb disability, fatigue, and mood disorders had the strongest relation with adaptation. All of the analysed symptoms were found to correlate with HRQoL. Of all the symptoms, HRQoL was most affected by lower- and upper-limb disability, fatigue, other MS problems, and mood disorders.
Characterization of Environmental Health Inequalities Due to Polyaromatic Hydrocarbon Exposure in France
Authors: Ioannidou Despoina , Malherbe Laure , Beauchamp Maxime , Saby Nicolas P.A. , Bonnard Roseline , Caudeville Julien
Published: November 2018

Reducing environmental health inequalities has become a major focus of public health efforts in France, as evidenced by the French action plans for health and the environment. To evaluate environmental inequalities, routine monitoring networks provide a valuable source of data on environmental contamination, which can be used in integrated assessments, to identify overexposed populations and prioritize actions. However, available databases generally do not meet sufficient spatial representativeness to characterize population exposure, as they are usually not assembled for this specific purpose. The aim of this study was to develop geoprocessing procedures and statistical methods to build spatial environmental variables (water, air, soil, and food pollutant concentrations) at a fine resolution, and provide appropriate input for the exposure modelling. Those methods were designed to combine in situ monitoring data with correlated auxiliary information (for example, atmospheric emissions, population, and altitude), in order to better represent the variability of the environmental compartment quality. The MODUL’ERS multimedia exposure model developed by INERIS (French Institute for industrial Environment and Risks) was then used to assess the transfer of substances from the environment to humans, through inhalation and ingestion pathway characterization. We applied the methodology to a carcinogenic Polycyclic Aromatic Hydrocarbon substance, benzo[a]pyrene(B[a]P), to map spatialized exposure indicators, at the national scale. The largest environmental contribution corresponded to the ingestion pathway. Data processing algorithms and calculation of exposure will be integrated into the French coordinated integrated environment and health platform PLAINE (PLteforme intégrée d’Analyse des INégalités Environnementales) which has been developed to map and analyze environmental health inequalities.
Older Adults Using Our Voice Citizen Science to Create Change in Their Neighborhood Environment
Authors: Tuckett Anthony G. , Freeman Abbey , Hetherington Sharon , Gardiner Paul A. , King Abby C. ,   On behalf of Burnie Brae Citizen Scientists
Published: November 2018

Physical activity, primarily comprised of walking in older adults, confers benefits for psychological health and mental well-being, functional status outcomes and social outcomes. In many communities, however, access to physical activity opportunities are limited, especially for older adults. This exploratory study engaged a small sample (N = 8) of adults aged 65 or older as citizen scientists to assess and then work to improve their communities. Using a uniquely designed mobile application (the Stanford Healthy Neighborhood Discovery Tool), participants recorded a total of 83 geocoded photos and audio narratives of physical environment features that served to help or hinder physical activity in and around their community center. In a facilitated process the citizen scientists then discussed, coded and synthesized their data. The citizen scientists then leveraged their findings to advocate with local decision-makers for specific community improvements to promote physical activity. These changes focused on: parks/playgrounds, footpaths, and traffic related safety/parking. Project results suggest that the Our Voice approach can be an effective strategy for the global goals of advancing rights and increasing self-determination among older adults.
Metabolomics Reveals Metabolic Changes Caused by Low-Dose 4-Tert-Octylphenol in Mice Liver
Authors: Zhou Kun , Ding Xingwang , Yang Jing , Hu Yanhui , Song Yun , Chen Minjian , Sun Rongli , Dong Tianyu , Xu Bo , Han Xiumei , Wu Keqin , Zhang Xiaoling , Wang Xinru , Xia Yankai
Published: November 2018

Background: Humans are constantly exposed to low concentrations of 4-tert-octylphenol (OP). However, studies investigating the effects of low-dose OP on the liver are scarce, and the mechanism of these effects has not been thoroughly elucidated to date. Methods: Adult male institute of cancer research (ICR) mice were exposed to low-dose OP (0, 0.01 and 1 μg/kg/day) for 7 consecutive days. Weights of mice were recorded daily during the experiment. Blood serum levels of OP, alanine aminotransferase (ALT) and aspartate aminotransferase (AST) were determined, and haematoxylin-eosin (HE) staining of the liver was performed. We applied an integrated metabolomic and enzyme gene expression analysis to investigate liver metabolic changes, and the gene expression of related metabolic enzymes was determined by real-time PCR and ELISA. Results: OP in blood serum was increased after OP exposure, while body weights of mice were unchanged. Liver weight and its organ coefficient were decreased significantly in the OP (1 μg/kg/day) group, but ALT and AST, as well as the HE staining results, were unchanged after OP treatment. The levels of cytidine, uridine, purine and N-acetylglutamine were increased significantly, and the level of vitamin B6 was decreased significantly in mice treated with OP (1 μg/kg/day). The mRNA and protein levels of Cda and Shmt1 were both increased significantly in OP (1 μg/kg/day)-treated mice. Conclusions: Through metabolomic analysis, our study firstly found that pyrimidine and purine synthesis were promoted and that N-acetylglutamine was upregulated after low-dose OP treatment, indicating that the treatment disturbed nucleic acid and amino acid metabolism in mice liver.
Therapeutic Potential of Plants and Plant Derived Phytochemicals against Acetaminophen-Induced Liver Injury
Authors: Subramanya Sandeep B. , Venkataraman Balaji , Meeran Mohamed Fizur Nagoor , Goyal Sameer N. , Patil Chandragouda R. , Ojha Shreesh
Published: November 2018

Acetaminophen (APAP), which is also known as paracetamol or N-acetyl-p-aminophenol is a safe and potent drug for fever, pain and inflammation when used at its normal therapeutic doses. It is available as over-the-counter drug and used by all the age groups. The overdose results in acute liver failure that often requires liver transplantation. Current clinical therapy for APAP-induced liver toxicity is the administration of N-acetyl-cysteine (NAC), a sulphydryl compound an approved drug which acts by replenishing cellular glutathione (GSH) stores in the liver. Over the past five decades, several studies indicate that the safety and efficacy of herbal extracts or plant derived compounds that are used either as monotherapy or as an adjunct therapy along with conventional medicines for hepatotoxicity have shown favorable responses. Phytochemicals mitigate necrotic cell death and protect against APAP-induced liver toxicityby restoring cellular antioxidant defense system, limiting oxidative stress and subsequently protecting mitochondrial dysfunction and inflammation. Recent experimental evidences indicat that these phytochemicals also regulate differential gene expression to modulate various cellular pathways that are implicated in cellular protection. Therefore, in this review, we highlight the role of the phytochemicals, which are shown to be efficacious in clinically relevant APAP-induced hepatotoxicity experimental models. In this review, we have made comprehensive attempt to delineate the molecular mechanism and the cellular targets that are modulated by the phytochemicals to mediate the cytoprotective effect against APAP-induced hepatotoxicity. In this review, we have also defined the challenges and scope of phytochemicals to be developed as drugs to target APAP-induced hepatotoxicity.
Red-Shifted Aminated Derivatives of GFP Chromophore for Live-Cell Protein Labeling with Lipocalins
Authors: Bozhanova Nina G. , Baranov Mikhail S. , Baleeva Nadezhda S. , Gavrikov Alexey S. , Mishin Alexander S.
Published: November 2018

Fluorogens are an attractive type of dye for imaging applications, eliminating time-consuming washout steps from staining protocols. With just a handful of reported fluorogen-protein pairs, mostly in the green region of spectra, there is a need for the expansion of their spectral range. Still, the origins of solvatochromic and fluorogenic properties of the chromophores suitable for live-cell imaging are poorly understood. Here we report on the synthesis and labeling applications of novel red-shifted fluorogenic cell-permeable green fluorescent protein (GFP) chromophore analogs.
Relating Linear Energy Transfer to the Formation and Resolution of DNA Repair Foci After Irradiation with Equal Doses of X-ray Photons, Plateau, or Bragg-Peak Protons
Authors: Oeck Sebastian , Szymonowicz Klaudia , Wiel Gesa , Krysztofiak Adam , Lambert Jamil , Koska Benjamin , Iliakis George , Timmermann Beate , Jendrossek Verena
Published: November 2018

Proton beam therapy is increasingly applied for the treatment of human cancer, as it promises to reduce normal tissue damage. However, little is known about the relationship between linear energy transfer (LET), the type of DNA damage, and cellular repair mechanisms, particularly for cells irradiated with protons. We irradiated cultured cells delivering equal doses of X-ray photons, Bragg-peak protons, or plateau protons and used this set-up to quantitate initial DNA damage (mainly DNA double strand breaks (DSBs)), and to analyze kinetics of repair by detecting γH2A.X or 53BP1 using immunofluorescence. The results obtained validate the reliability of our set-up in delivering equal radiation doses under all conditions employed. Although the initial numbers of γH2A.X and 53BP1 foci scored were similar under the different irradiation conditions, it was notable that the maximum foci level was reached at 60 min after irradiation with Bragg-peak protons, as compared to 30 min for plateau protons and photons. Interestingly, Bragg-peak protons induced larger and irregularly shaped γH2A.X and 53BP1 foci. Additionally, the resolution of these foci was delayed. These results suggest that Bragg-peak protons induce DNA damage of increased complexity which is difficult to process by the cellular repair apparatus.
Intergeneric Relationships within the Early-Diverging Angiosperm Family Nymphaeaceae Based on Chloroplast Phylogenomics
Authors: He Dingxuan , Gichira Andrew W. , Li Zhizhong , Nzei John M. , Guo Youhao , Wang Qingfeng , Chen Jinming
Published: November 2018

The order Nymphaeales, consisting of three families with a record of eight genera, has gained significant interest from botanists, probably due to its position as a basal angiosperm. The phylogenetic relationships within the order have been well studied; however, a few controversial nodes still remain in the Nymphaeaceae. The position of the Nuphar genus and the monophyly of the Nymphaeaceae family remain uncertain. This study adds to the increasing number of the completely sequenced plastid genomes of the Nymphaeales and applies a large chloroplast gene data set in reconstructing the intergeneric relationships within the Nymphaeaceae. Five complete chloroplast genomes were newly generated, including a first for the monotypic Euryale genus. Using a set of 66 protein-coding genes from the chloroplast genomes of 17 taxa, the phylogenetic position of Nuphar was determined and a monophyletic Nymphaeaceae family was obtained with convincing statistical support from both partitioned and unpartitioned data schemes. Although genomic comparative analyses revealed a high degree of synteny among the chloroplast genomes of the ancient angiosperms, key minor variations were evident, particularly in the contraction/expansion of the inverted-repeat regions and in RNA-editing events. Genome structure, and gene content and arrangement were highly conserved among the chloroplast genomes. The intergeneric relationships defined in this study are congruent with those inferred using morphological data.
FKBP8 Enhances Protein Stability of the CLC-1 Chloride Channel at the Plasma Membrane
Authors: Peng Yi-Jheng , Lee Yi-Ching , Fu Ssu-Ju , Chien Yun-Chia , Liao Yi-Fan , Chen Tsung-Yu , Jeng Chung-Jiuan , Tang Chih-Yung
Published: November 2018

Mutations in the skeletal muscle-specific CLC-1 chloride channel are associated with the human hereditary disease myotonia congenita. The molecular pathophysiology underlying some of the disease-causing mutations can be ascribed to defective human CLC-1 protein biosynthesis. CLC-1 protein folding is assisted by several molecular chaperones and co-chaperones, including FK506-binding protein 8 (FKBP8). FKBP8 is generally considered an endoplasmic reticulum- and mitochondrion-resident membrane protein, but is not thought to contribute to protein quality control at the cell surface. Herein, we aim to test the hypothesis that FKBP8 may regulate CLC-1 protein at the plasma membrane. Surface biotinylation and subcellular fractionation analyses reveal that a portion of FKBP8 is present at the plasma membrane, and that co-expression with CLC-1 enhances surface localization of FKBP8. Immunoblotting analyses of plasma membrane proteins purified from skeletal muscle further confirm surface localization of FKBP8. Importantly, FKBP8 promotes CLC-1 protein stability at the plasma membrane. Together, our data underscore the importance of FKBP8 in the peripheral quality control of CLC-1 channel.
Molecular Characterization and Overexpression of SmJMT Increases the Production of Phenolic Acids in Salvia miltiorrhiza
Authors: Wang Bin , Niu Junfeng , Li Bin , Huang Yaya , Han Limin , Liu Yuanchu , Zhou Wen , Hu Suying , Li Lin , Wang Donghao , Wang Shiqiang , Cao Xiaoyan , Wang Zhezhi
Published: November 2018

Jasmonic acid (JA) carboxyl methyltransferase (JMT), a key enzyme in jasmonate-regulated plant responses, may be involved in plant defense and development by methylating JA to MeJA, thus influencing the concentrations of MeJA in plant. In this study, we isolated the JMT gene from Salvia miltiorrhiza, an important medicinal plant widely used to treat cardiovascular disease. We present a genetic manipulation strategy to enhance the production of phenolic acids by overexpresion SmJMT in S. miltiorrhiza. Global transcriptomic analysis using RNA sequencing showed that the expression levels of genes involved in the biosynthesis pathway of phenolic acids and MeJA were upregulated in the overexpression lines. In addition, the levels of endogenous MeJA, and the accumulation of rosmarinic acid (RA) and salvianolic acid (Sal B), as well as the concentrations of total phenolics and total flavonoids in transgenic lines, were significantly elevated compared with the untransformed control. Our results demonstrate that overexpression of SmJMT promotes the production of phenolic acids through simultaneously activating genes encoding key enzymes involved in the biosynthesis pathway of phenolic acids and enhancing the endogenous MeJA levels in S. miltiorrhiza.
Combining PARP Inhibition, Radiation, and Immunotherapy: A Possible Strategy to Improve the Treatment of Cancer?
Authors: Césaire Mathieu , Thariat Juliette , Candéias Serge M. , Stefan Dinu , Saintigny Yannick , Chevalier François
Published: November 2018

Immunotherapy has revolutionized the practice of oncology, improving survival in certain groups of patients with cancer. Immunotherapy can synergize with radiation therapy, increase locoregional control, and have abscopal effects. Combining it with other treatments, such as targeted therapies, is a promising means of improving the efficacy of immunotherapy. Because the value of immunotherapy is amplified with the expression of tumor antigens, coupling poly(ADP-ribose) polymerase (PARP) inhibitors and immunotherapy might be a promising treatment for cancer. Further, PARP inhibitors (PARPis) are being combined with radiation therapy to inhibit DNA repair functions, thus enhancing the effects of radiation; this association might interact with the antitumor immune response. Cytotoxic T lymphocytes are central to the antitumor immune response. PARP inhibitors and ionizing radiation can enhance the infiltration of cytotoxic T lymphocytes into the tumor bed, but they can also enhance PD-1/PDL-1 expression. Thus, the addition of immune checkpoint inhibitors with PARP inhibitors and/or ionizing radiation could counterbalance such immunosuppressive effects. With the present review article, we proposed to evaluate some of these associated therapies, and we explored the biological mechanisms and medical benefits of the potential combination of radiation therapy, immunotherapy, and PARP inhibitors.
Thermal Shock Performance of DBA/AMB Substrates Plated by Ni and Ni–P Layers for High-Temperature Applications of Power Device Modules
Authors: Choe Chanyang , Chen Chuantong , Noh Seungjun , Suganuma Katsuaki
Published: November 2018

The thermal cycling life of direct bonded aluminum (DBA) and active metal brazing (AMB) substrates with two types of plating—Ni electroplating and Ni–P electroless plating—was evaluated by thermal shock tests between −50 and 250 °C. AMB substrates with Al2O3 and AlN fractured only after 10 cycles, but with Si3N4 ceramic, they retained good thermal stability even beyond 1000 cycles, regardless of the metallization type. The Ni layer on the surviving AMB substrates with Si3N4 was not damaged, while a crack occurred in the Ni–P layer. For DBA substrates, fracture did not occur up to 1000 cycles for all kind of ceramics. On the other hand, the Ni–P layer was roughened and cracked according to the severe deformation of the aluminum layer, while the Ni layer was not damaged after thermal shock tests. In addition, the deformation mechanism of an Al plate on a ceramic substrate was investigated both by microstructural observation and finite element method (FEM) simulation, which confirmed that grain boundary sliding was a key factor in the severe deformation of the Al layer that resulted in the cracking of the Ni–P layer. The fracture suppression in the Ni layer on DBA/AMB substrates can be attributed to its ductility and higher strength compared with those of Ni–P plating.
Mechanical Performance of Glass-Based Geopolymer Matrix Composites Reinforced with Cellulose Fibers
Authors: Taveri Gianmarco , Bernardo Enrico , Dlouhy Ivo
Published: November 2018

Glass-based geopolymers, incorporating fly ash and borosilicate glass, were processed in conditions of high alkalinity (NaOH 10–13 M). Different formulations (fly ash and borosilicate in mixtures of 70–30 wt% and 30–70 wt%, respectively) and physical conditions (soaking time and relative humidity) were adopted. Flexural strength and fracture toughness were assessed for samples processed in optimized conditions by three-point bending and chevron notch testing, respectively. SEM was used to evaluate the fracture micromechanisms. Results showed that the geopolymerization efficiency is strongly influenced by the SiO2/Al2O3 ratio and the curing conditions, especially the air humidity. The mechanical performances of the geopolymer samples were compared with those of cellulose fiber–geopolymer matrix composites with different fiber contents (1 wt%, 2 wt%, and 3 wt%). The composites exhibited higher strength and fracture resilience, with the maximum effect observed for the fiber content of 2 wt%. A chemical modification of the cellulose fiber surface was also observed.
Fast Microwave-Assisted Hydrothermal Synthesis of Pure Layered δ-MnO2 for Multivalent Ion Intercalation
Authors: Eckert Martin , Peters Willi , Drillet Jean-Francois
Published: November 2018

This work reports on the synthesis of layered manganese oxides (δ-MnO2) and their possible application as cathode intercalation materials in Al-ion and Zn-ion batteries. By using a one-pot microwave-assisted synthesis route in 1.6 M KOH (MnVII:MnII = 0.33), a pure layered δ-MnO2 birnessite phase without any hausmannite traces was obtained after only a 14 h reaction time period at 110 °C. Attempts to enhance crystallinity level of as-prepared birnessite through increasing of reaction time up to 96 h in 1.6 M KOH failed and led to decreases in crystallinity and the emergence of an additional hausmannite phase. The influence of MnII:OH− ratio (1:2 to 1:10) on phase crystallinity and hausmannite phase formation for 96 h reaction time was investigated as well. By increasing alkalinity of the reaction mixture up to 2.5 M KOH, a slight increase in crystallinity of birnessite phase was achieved, but hausmannite formation couldn’t be inhibited as hoped. The as-prepared layered δ-MnO2 powder material was spray-coated on a carbon paper and tested in laboratory cells with Al or Zn as active materials. The Al-ion tests were carried out in EMIMCl/AlCl3 while the Zn-Ion experiments were performed in water containing choline acetate (ChAcO) or a ZnSO4 solution. Best performance in terms of capacity was yielded in the Zn-ion cell (200 mWh g−1 for 20 cycles) compared to about 3 mAh g−1 for the Al-ion cell. The poor activity of the latter system was attributed to low dissociation rate of tetrachloroaluminate ions (AlCl4−) in the EMIMCl/AlCl3 mixture into positive Al complexes which are needed for charge compensation of the oxide-based cathode during the discharge step.
Accelerating Cementite Precipitation during the Non-Isothermal Process by Applying Tensile Stress in GCr15 Bearing Steel
Authors: Wang Feng , Qian Dong-Sheng , Xiao Peng , Deng Song
Published: November 2018

In this work, the non-isothermal process of GCr15 bearing steel after quenching and tempering (QT) under different tensile stress (0, 20, 40 MPa) was investigated by kinetic analysis and microstructural observation. The Kissinger method and differential isoconversional method were employed to assess the kinetic parameters of the microstructural evolution during the non-isothermal process with and without applied stress. It is found that the activation energy of retained austenite decomposition slightly increases from 109.4 kJ/mol to 121.5 kJ/mol with the increase of tensile stress. However, the activation energy of cementite precipitation decreases from 179.4 kJ/mol to 94.7 kJ/mol, proving that tensile stress could reduce the energy barrier of cementite precipitation. In addition, the microstructural observation based on scanning and transmission electron microscopy (SEM and TEM) shows that more cementite has formed for the specimens with the applied tensile stress, whereas there is still a large number of ε carbides existing in the specimens without stress. The results of X-ray diffraction (XRD) also verify that carbon in martensite diffuses more and participates in the formation of cementite under the applied tensile stress, which thus are in good agreement with the kinetic analysis. The mechanisms for the differences in cementite precipitation behaviors may lie in the acceleration of carbon atoms migration and the reduction of the nucleation barrier by applying tensile stress.
Enhancing Corrosion Resistance and Hardness Properties of Carbon Steel through Modification of Microstructure
Authors: Handoko Wilson , Pahlevani Farshid , Sahajwalla Veena
Published: November 2018

Steel has played a primary role as structural and fabricating materials in various industrial applications—including the construction sector. One of the most important properties of steel that required a constant improvement is corrosion resistance specifically in corrosive environment. For this purpose, various approaches have been conducted through different heat treatment parameters to compare its microstructural engineering on chemical and mechanical properties. In this paper, correlation of different microstructure on corrosion resistance and hardness properties have been investigated. Three different heat treatment cycle have been applied on carbon steel with same composition to prepare dual-structure (DS) steel that consisted of ferrite/pearlite and triple-structure (TS) with ferrite/pearlite/bainite and ferrite/bainite/martensite. Phase transformation during heat treatment process was analyzed through in-situ ultra-high temperature confocal microscopy. Effect of corrosion behavior on these steels was investigated by Tafel plot, Scanning Electron Microscopy (SEM), 3D laser scanning confocal microscopy (3DLSCM), and calculation of phase volume fraction by ImageJ. Mechanical test was conducted by Vickers hardness test. It has been found that TS steels that have improvement in corrosion resistance accounted around 5.31% and hardness value for up to 27.34% more than DS steel, because of tertiary phase—bainite/martensite. This corrosion rate was reduced due to decreased numbers of pit growth and lower level of boundary corrosion as bainite/martensite phases emerged.
Quiver Gauge Theories: Finitude and Trichotomoty
Authors: He Yang-Hui
Published: November 2018

D-brane probes, Hanany-Witten setups and geometrical engineering stand as a trichotomy of standard techniques of constructing gauge theories from string theory. Meanwhile, asymptotic freedom, conformality and IR freedom pose as a trichotomy of the beta-function behaviour in quantum field theories. Parallel thereto is a trichotomy in set theory of finite, tame and wild representation types. At the intersection of the above lies the theory of quivers. We briefly review some of the terminology standard to the physics and to the mathematics. Then, we utilise certain results from graph theory and axiomatic representation theory of path algebras to address physical issues such as the implication of graph additivity to finiteness of gauge theories, the impossibility of constructing completely IR free string orbifold theories and the unclassifiability of N < 2 Yang-Mills theories in four dimensions.