bluuebunny/crossref_metadata_2025 huggingface dataset:
Coupling of surface pCO2 and dissolved oxygen in the northern South China Sea: impacts of contrasting coastal processes
Authors: Zhai W. D. , Dai M. , Cai W.-J.
Published: April 2010

Abstract. We examined the relationship between CO2 partial pressure (pCO2) and dissolved oxygen (DO) based on a cruise conducted in July 2004 to the northern South China Sea (111°–118° E 18°–23° N), spanning from estuarine plume, coastal upwelling and deep basin areas. Distinct relationships between pCO2 and DO saturation were identified in different regimes. In coastal upwelling areas and the Pearl River estuary, biological drawdown of pCO2 and production of O2 were simultaneously observed. The two properties were coupled with each other primarily via photosynthesis and respiration. The stoichiometric relationship of the two properties however, was quite different in these two environments due to different values of the Revelle factor. In the offshore areas, apart from the estuary and upwelling, the dynamics of pCO2 and DO were mainly influenced by air-sea exchange during water mixing. Given the fact that air-sea re-equilibration of O2 is much faster than that of CO2, the observed pCO2-DO relationship deviated from that of the theoretical prediction based on the Redfield relationship in the offshore areas. Although this study is subject to the limited temporal and spatial coverage of sampling, we have demonstrated a simple procedure to evaluate the community metabolic status based on a combination of high-resolution surface pCO2 and DO measurements, which may have applicability in many coastal systems with a large gradient of changes in their physical and biogeochemical conditions.
The dissolved yellow substance and the shades of blue in the Mediterranean Sea
Authors: Morel A. , Gentili B.
Published: April 2010

Abstract. When the nominal algorithms commonly in use in Space Agencies are applied to satellite Ocean Color data, the retrieved chlorophyll concentrations in the Mediterranean Sea are recurrently notable overestimates of the field values. Accordingly, several regionally tuned algorithms have been proposed in the past to correct for this deviation. Actually, the blueness of the Mediterranean waters is not as deep as expected from the actual (low) chlorophyll content, and the modified algorithms account for this peculiarity. Among the possible causes for such a deviation, an excessive amount of yellow substance (or of chromophoric dissolved organic matter, CDOM) has been frequently cited. This conjecture is presently tested, by using a new technique simply based on the simultaneous consideration of marine reflectance determined at four spectral bands, namely at 412, 443, 490, and 555 nm, available on the NASA-SeaWiFS sensor (Sea–viewing Wide Field-of-view Sensor). It results from this test that the concentration in yellow colored material (quantified as ay, the absorption coefficient of this material at 443 nm) is about twice that one observed in the nearby Atlantic Ocean at the same latitude. There is a strong seasonal signal, with maximal ay values in late fall and winter, an abrupt decrease beginning in spring, and then a flat minimum during the summer months, which plausibly results from the intense photo-bleaching process favored by the high level of sunshine in these areas. Systematically, the ay values, reproducible from year to year, are higher in the western basin compared with those in the eastern basin (by about 50%). The relative importance of the river discharges into this semi-enclosed sea, as well as the winter deep vertical mixing occurring in the northern parts of the basins may explain the high yellow substance background. The regionally tuned [Chl] algorithms, actually reflect the presence of an excess of CDOM with respect to its standard (Chl-related) values. When corrected for the presence of the actual CDOM content, the [Chl] values as derived via the nominal algorithms are restored to more realistic values, i.e., approximately divided by about two; the strong autumnal increase is smoothed whereas the spring bloom remains as an isolated feature.
Nitrogen uptake and regeneration pathways in the equatorial Pacific: a basin scale modeling study
Authors: Wang X. J. , Murtugudde R. , Le Borgne R.
Published: April 2010

Abstract. It is well known that most primary production is fueled by regenerated nitrogen in the open ocean. Therefore, studying the nitrogen cycle by focusing on uptake and regeneration pathways would advance our understanding of nitrogen dynamics in the marine ecosystem. Here, we carry out a basin-scale modeling study, by assessing model simulations of nitrate and ammonium, and rates of nitrate uptake, ammonium uptake and regeneration in the equatorial Pacific. Model-data comparisons show that the model is able to reproduce many observed features of nitrate, ammonium, such as the deep ammonium maximum (DAM). The model also reproduces the observed de-coupling of ammonium uptake and regeneration, i.e., regeneration rate greater than uptake rate in the lower euphotic zone. The de-coupling largely explains the observed DAM in the equatorial Pacific Ocean. Our study indicates that zooplankton excretion and remineralization of organic nitrogen play a different role in nitrogen regeneration. Rates of zooplankton excretion vary from <0.01 mmol m−3 d−1 to 0.1 mmol m−3 d−1 in the upper euphotic zone while rates of remineralization fall within a narrow range (0.015–0.025 mmol m−3 d−1 . Zooplankton excretion contributes up to 70% of total ammonium regeneration in the euphotic zone, and is largely responsible for the spatial variability of nitrogen regeneration. However, remineralization provides a steady supply of ammonium in the upper ocean, and is a major source of inorganic nitrogen for the oligotrophic regions. Overall, ammonium generation and removal are approximately balanced over the top 150 m in the equatorial Pacific.
Enhanced ocean carbon storage from anaerobic alkalinity generation in coastal sediments
Authors: Thomas H. , Schiettecatte L.-S. , Suykens K. , Koné Y. J. M. , Shadwick E. H. , Prowe A. E. F. , Bozec Y. , de Baar H. J. W. , Borges A. V.
Published: April 2010

Abstract. The coastal ocean is a crucial link between land, the open ocean and the atmosphere. The shallowness of the water column permits close interactions between the sedimentary, aquatic and atmospheric compartments, which otherwise are decoupled at long time scales (≅ 1000 yr) in the open oceans. Despite the prominent role of the coastal oceans in absorbing atmospheric CO2 and transferring it into the deep oceans via the continental shelf pump, the underlying mechanisms remain only partly understood. Evaluating observations from the North Sea, a NW European shelf sea, we provide evidence that anaerobic degradation of organic matter, fuelled from land and ocean, generates total alkalinity (AT) and increases the CO2 buffer capacity of seawater. At both the basin wide and annual scales anaerobic AT generation in the North Sea's tidal mud flat area irreversibly facilitates 7–10%, or taking into consideration benthic denitrification in the North Sea, 20–25% of the North Sea's overall CO2 uptake. At the global scale, anaerobic AT generation could be accountable for as much as 60% of the uptake of CO2 in shelf and marginal seas, making this process, the anaerobic pump, a key player in the biological carbon pump. Under future high CO2 conditions oceanic CO2 storage via the anaerobic pump may even gain further relevance because of stimulated ocean productivity.
Basin-wide variations in foliar properties of Amazonian forest: phylogeny, soils and climate
Authors: Fyllas N. M. , Patiño S. , Baker T. R. , Bielefeld Nardoto G. , Martinelli L. A. , Quesada C. A. , Paiva R. , Schwarz M. , Horna V. , Mercado L. M. , Santos A. , Arroyo L. , Jiménez E. M. , Luizão F. J. , Neill D. A. , Silva N. , Prieto A. , Rudas A. , Silviera M. , Vieira I. C. G. , Lopez-Gonzalez G. , Malhi Y. , Phillips O. L. , Lloyd J.
Published: April 2010

Abstract. We analysed 1040 individual trees, located in 62 plots across the Amazon Basin for leaf mass per unit area (MA), foliar carbon isotopic composition (δ13C) and leaf level concentrations of C, N, P, Ca, Mg, K and Al. All trees were identified to the species level with the dataset containing 58 families, 236 genera and 508 species, distributed across a wide range of soil types and precipitation regimes. Some foliar characteristics such as MA, [C], [N] and [Mg] emerge as highly constrained by the taxonomic affiliation of tree species, but with others such as [P], [K], [Ca] and δ13C also strongly influenced by site growing conditions. By removing the environmental contribution to trait variation, we find that intrinsic values of most trait pairs coordinate, although different species (characterised by different trait suites) are found at discrete locations along a common axis of coordination. Species that tend to occupy higher fertility soils are characterised by a lower MA and have a higher intrinsic [N], [P], [K], [Mg] and δ13C than their lower fertility counterparts. Despite this consistency, different scaling patterns were observed between low and high fertility sites. Inter-relationships are thus substantially modified by growth environment. Analysing the environmental component of trait variation, we found soil fertility to be the most important predictor, influencing all leaf nutrient concentrations and δ13C and reducing MA. Mean annual temperature was negatively associated with leaf level [N], [P] and [K] concentrations. Total annual precipitation positively influences MA, [C] and δ13C, but with a negative impact on [Mg]. These results provide a first basis for understanding the relationship between the physiological functioning and distribution of tree species across Amazonia.
Mountain birch – potentially large source of sesquiterpenes into high latitude atmosphere
Authors: Haapanala S. , Ekberg A. , Hakola H. , Tarvainen V. , Rinne J. , Hellén H. , Arneth A.
Published: April 2010

Abstract. Emissions of volatile organic compounds (VOCs) from mountain birches were measured in Abisko, northern Sweden. Mountain birches make up the majority of the tree biomass in Scandinavian high latitudes, a region subject to significant climate warming. The measurements were carried out in two growing seasons. The emissions of four branches, each from a different individual tree, were measured in June–August 2006 and one of them again in July 2007. The measurements were conducted using a dynamic flow through chamber covered with Teflon film. The studied mountain birches were found to emit substantial amounts of linalool, monoterpenes and sesquiterpenes. The monoterpene emission was dominated by sabinene. The magnitude and composition of the sesquiterpene emission changed dramatically between the years. For example, the average α-farnesene emission potential in 2006 was almost 2600 ng gdw−1 h−1 (3.5 pmol gdw−1 s−1) while in 2007 α-farnesene was not detected at all. Also the emissions of other sesquiterpenes decreased in 2007 to a fraction of that in 2006. One possible explanation for the change in emissions is the herbivory damage that occurred in the area in 2004. Herbivory is known to enhance the emissions of sesquiterpenes, especially those of α-farnesene, and the effect may last for several years.
Optimization of the seasonal cycles of simulated CO2 flux by fitting simulated atmospheric CO2 to observed vertical profiles
Authors: Nakatsuka Y. , Maksyutov S.
Published: April 2010

Abstract. An inverse of a combination of atmospheric transport and flux models was used to optimize the Carnegie-Ames-Stanford Approach (CASA) terrestrial ecosystem model properties such as light use efficiency and temperature dependence of the heterotrophic respiration separately for each vegetation type. The method employed in the present study is based on minimizing the differences between the simulated and observed seasonal cycles of CO2 concentrations. In order to compensate for possible vertical mixing biases in a transport model we use airborne observations of CO2 vertical profile aggregated to a partial column instead of surface observations used predominantly in other parameter optimization studies. Effect of the vertical mixing on optimized net ecosystem production (NEP) was evaluated by carrying out 2 sets of inverse calculations: one with partial-column concentration data from 15 locations and another with near-surface CO2 concentration data from the same locations. We confirmed that the simulated growing season net flux (GSNF) and net primary productivity (NPP) are about 14% higher for northern extra-tropical land when optimized with partial column data as compared to the case with near-surface data.
Towards spatial assessment of carbon sequestration in peatlands: spectroscopy based estimation of fractional cover of three plant functional types
Authors: Schaepman-Strub G. , Limpens J. , Menken M. , Bartholomeus H. M. , Schaepman M. E.
Published: April 2010

Abstract. Peatlands accumulated large carbon (C) stocks as peat in historical times. Currently however, many peatlands are on the verge of becoming sources with their C sequestration function becoming sensitive to environmental changes such as increases in temperature, decreasing water table and enhanced nitrogen deposition. Long term changes in vegetation composition are both, a consequence and indicator of future changes in C sequestration. Spatial continuous accurate assessment of the vegetation composition is a current challenge in keeping a close watch on peatland vegetation changes. In this study we quantified the fractional cover of three major plant functional types (PFTs; Sphagnum mosses, graminoids, and ericoid shrubs) in peatlands, using field spectroscopy reflectance measurements (400–2400 nm) on 25 plots differing in PFT cover. The data was validated using point intercept methodology on the same plots. Our results showed that the detection of open Sphagnum versus Sphagnumcovered by vascular plants (shrubs and graminoids) is feasible with an R2 of 0.81. On the other hand, the partitioning of the vascular plant fraction into shrubs and graminoids revealed lower correlations of R2 of 0.54 and 0.57, respectively. This study was based on a dataset where the reflectance of all main PFTs and their pure components within the peatland was measured at local spatial scales. Spectrally measured species or plant community abundances can further be used to bridge scaling gaps up to canopy scale, ultimately allowing upscaling of the C balance of peatlands to the ecosystem level.
Reconstructing the Nd oceanic cycle using a coupled dynamical – biogeochemical model
Authors: Arsouze T. , Dutay J.-C. , Lacan F. , Jeandel C.
Published: April 2010

Abstract. The decoupled behaviour observed between Nd isotopic composition (Nd IC, also referred as εNd) and Nd concentration cycles has led to the notion of a "Nd paradox". While εNd behaves in a quasi-conservative way in the open ocean, leading to its broad use as a water-mass tracer, Nd concentration displays vertical profiles that increase with depth, together with a deep-water enrichment along the global thermohaline circulation. This non-conservative behaviour is typical of nutrients affected by scavenging in surface waters and remineralisation at depth. In addition, recent studies suggest the only way to reconcile both concentration and Nd IC oceanic budgets, is to invoke a "Boundary Exchange" process (BE, defined as the co-occurrence of transfer of elements from the margin to the sea with removal of elements from the sea by Boundary Scavenging) as a source-sink term. However, these studies do not simulate the input/output fluxes of Nd to the ocean, and therefore prevents from crucial information that limits our understanding of Nd decoupling. To investigate this paradox on a global scale, this study uses for the first time a fully prognostic coupled dynamical/biogeochemical model with an explicit representation of Nd sources and sinks to simulate the Nd oceanic cycle. Sources considered include dissolved river fluxes, atmospheric dusts and margin sediment re-dissolution. Sinks are scavenging by settling particles. This model simulates the global features of the Nd oceanic cycle well, and produces a realistic distribution of Nd concentration (correct order of magnitude, increase with depth and along the conveyor belt, 65% of the simulated values fit in the ±10 pmol/kg envelop when compared to the data) and isotopic composition (inter-basin gradient, characterization of the main water-masses, more than 70% of the simulated values fit in the ±3 εNd envelop when compared to the data), though a slight overestimation of Nd concentrations in the deep Pacific Ocean may reveal an underestimation of the particle fields by the biogeochemical model. Our results indicate 1) vertical cycling (scavenging/remineralisation) is absolutely necessary to simulate both concentration and εNd, and 2) BE is the dominant Nd source to the ocean. The estimated BE flux (1.1×1010 g(Nd)/yr) is much higher than both dissolved river discharge (2.6×108 g(Nd)/yr) and atmospheric inputs (1.0×108 g(Nd)/yr) that both play negligible role in the water column but are necessary to reconcile Nd IC in surface and subsurface waters. This leads to a new calculated residence time of 360 yrs for Nd in the ocean. The BE flux requires the dissolution of 3 to 5% of the annual flux of continental weathering deposited via the solid river discharge to the continental margin.
Spatial distribution of the iron supply to phytoplankton in the Southern Ocean: a model study
Authors: Lancelot C. , de Montety A. , Goosse H. , Becquevort S. , Schoemann V. , Pasquer B. , Vancoppenolle M.
Published: April 2010

Abstract. An upgraded version of the biogeochemical model SWAMCO is coupled to the ocean-sea-ice model NEMO-LIM to explore processes governing the spatial distribution of the iron supply to phytoplankton in the Southern Ocean. The 3-D NEMO-LIM-SWAMCO model is implemented in the ocean domain south of latitude 30° S and runs are performed over September 1989–December 2000. Model scenarios include potential iron sources (atmospheric deposition, iceberg calving/melting and continental sediments) as well as iron storage within sea ice, all formulated based on a literature review. When all these processes are included, the simulated iron profiles and phytoplankton bloom distributions show satisfactory agreement with observations. Analyses of simulations and sensitivity tests point to the key role played by continental sediments as a primary source for iron. Iceberg calving and melting contribute by up to 25% of Chl-a simulated in areas influenced by icebergs while atmospheric deposition has little effect at high latitudes. Activating sea ice-ocean iron exchanges redistribute iron geographically. Stored in the ice during winter formation, iron is then transported due to ice motion and is released and made available to phytoplankton during summer melt, in the vicinity of the marginal ice zones. Transient iron storage and transport associated with sea ice dynamics stimulate summer phytoplankton blooming (up to 3 mg Chl-a m-3 in the Weddell Sea and off East Antarctica but not in the Ross, Bellingshausen and Amundsen Seas. This contrasted feature results from the simulated variable content of iron in sea ice and release of melting ice showing higher ice-ocean iron fluxes in the continental shelves of the Weddell and Ross Seas than in the Eastern Weddell Sea and the Bellingshausen-Amundsen Seas. This study confirms that iron sources and transport in the Southern Ocean likely provide important mechanisms in the geographical development of phytoplankton blooms and associated ecosystems.
Environmental influences on carbon dioxide fluxes over three grassland ecosystems in China
Authors: Fu Y. , Zheng Z. , Yu G. , Hu Z. , Sun X. , Shi P. , Wang Y. , Zhao X.
Published: April 2010

Abstract. This study compared carbon dioxide (CO2) fluxes over three grassland ecosystems in China, including a temperate semiarid steppe in Inner Mongolia (NMG), an alpine shrub-meadow in Qinghai (HB), and an alpine meadow-steppe in Tibet (DX). Measurements were made in 2004 and 2005 using the eddy covariance technique. Objectives were to document the seasonality of the net ecosystem exchange of CO2 (NEE) and its components, gross ecosystem photosynthesis (GEP), and ecosystem respiration (Reco), and to examine how environmental factors affect the CO2 exchange in these grassland ecosystems. The 2005 growing season (from May to September) was warmer than that of 2004 across the three sites, and precipitation in 2005 was less than that in 2004 at NMG and DX. The magnitude of CO2 fluxes (daily and annual sums) was largest at HB, which also showed the highest temperature sensitivity of Reco among the three sites. A stepwise multiple regression analysis showed that the seasonal variation of GEP, Reco, and NEE of the alpine shrub-meadow was mainly controlled by air temperature, whereas leaf area index can likely explain the seasonal variation in GEP, Reco, and NEE of the temperate steppe. The CO2 fluxes of the alpine meadow-steppe were jointly affected by soil moisture and air temperature. The alpine shrub-meadow acted as a net carbon sink over the two study years, whereas the temperate steppe and alpine meadow-steppe acted as net carbon sources. Both GEP and Reco were reduced by the summer and spring drought in 2005 at NMG and DX, respectively. The accumulated leaf area index during the growing season (LAIsum) played a key role in the interannual and intersite variation of annual GEP and Reco across the study sites and years, whereas soil moisture contributed most significantly to the variation in annual NEE. Because LAIsum was significantly correlated with soil moisture at a depth of 20 cm, we concluded that the available soil moisture other than annual precipitation was the most important factor controlling the variation in the CO2 budgets of different grassland ecosystems in China.
Dynamics of ammonia exchange with cut grassland: synthesis of results and conclusions of the GRAMINAE Integrated Experiment
Authors: Sutton M. A. , Nemitz E. , Milford C. , Campbell C. , Erisman J. W. , Hensen A. , Cellier P. , David M. , Loubet B. , Personne E. , Schjoerring J. K. , Mattsson M. , Dorsey J. R. , Gallagher M. W. , Horvath L. , Weidinger T. , Meszaros R. , Dämmgen U. , Neftel A. , Herrmann B. , Lehman B. E. , Flechard C. , Burkhardt J.
Published: April 2010

Abstract. Improved data on biosphere-atmosphere exchange are fundamental to understanding the production and fate of ammonia (NH3) in the atmosphere. The GRAMINAE Integrated Experiment combined novel measurement and modelling approaches to provide the most comprehensive analysis of the interactions to date. Major inter-comparisons of micrometeorological parameters and NH3 flux measurements using the aerodynamic gradient method and relaxed eddy accumulation (REA) were conducted. These showed close agreement, though the REA systems proved insufficiently precise to investigate vertical flux divergence. Grassland management had a large effect on fluxes: emissions increased after grass cutting (−50 to 700 ng m−2 s−1 NH3) and after N-fertilization (0 to 3800 ng m−2 s−1) compared with before the cut (−60 to 40 ng m−2 s−1). Effects of advection and air chemistry were investigated using horizontal NH3 profiles, acid gas and particle flux measurements. Inverse modelling of NH3 emission from an experimental farm agreed closely with inventory estimates, while advection errors were used to correct measured grassland fluxes. Advection effects were caused both by the farm and by emissions from the field, with an inverse dispersion-deposition model providing a reliable new approach to estimate net NH3 fluxes. Effects of aerosol chemistry on net NH3 fluxes were small, while the measurements allowed NH3-induced particle growth rates to be calculated and aerosol fluxes to be corrected. Bioassays estimated the emission potential Γ = [NH4+]/[H+] for different plant pools, with the apoplast having the smallest values (30–1000). The main within-canopy sources of NH3 emission appeared to be leaf litter and the soil surface, with Γ up to 3 million and 300 000, respectively. Cuvette and within-canopy analyses confirmed the role of leaf litter NH3 emission, which, prior to cutting, was mostly recaptured within the canopy. Measured ammonia fluxes were compared with three models: an ecosystem model (PaSim), a soil vegetation atmosphere transfer model (SURFATM-NH3) and a dynamic leaf chemistry model (DCC model). The different models each reproduced the main temporal dynamics in the flux, highlighting the importance of canopy temperature dynamics (Surfatm-NH3), interactions with ecosystem nitrogen cycling (PaSim) and the role of leaf surface chemistry (DCC model). Overall, net above-canopy fluxes were mostly determined by stomatal and cuticular uptake (before the cut), leaf litter emissions (after the cut) and fertilizer and litter emissions (after fertilization). The dynamics of ammonia emission from leaf litter are identified as a priority for future research.
A macro-tidal freshwater ecosystem recovering from hypereutrophication: the Schelde case study
Authors: Cox T. J. S. , Maris T. , Soetaert K. , Conley D. J. , Van Damme S. , Meire P. , Middelburg J. J. , Vos M. , Struyf E.
Published: April 2010

Abstract. We report a 40 year record of eutrophication and hypoxia on an estuarine ecosystem and its recovery from hypereutrophication. After decades of high inorganic nutrient concentrations and recurring anoxia and hypoxia, we observe a paradoxical increase in chlorophyll-a concentrations with decreasing nutrient inputs. We hypothesise that algal growth was inhibited due to hypereutrophication, either by elevated ammonium concentrations, severe hypoxia or the production of harmful substances in such a reduced environment. We study the dynamics of a simple but realistic mathematical model, incorporating the assumption of algal growth inhibition. It shows a high algal biomass, net oxygen production equilibrium with low ammonia inputs, and a low algal biomass, net oxygen consumption equilibrium with high ammonia inputs. At intermediate ammonia inputs it displays two alternative stable states. Although not intentional, the numerical output of this model corresponds to observations, giving extra support for assumption of algal growth inhibition. Due to potential algal growth inhibition, the recovery of hypereutrophied systems towards a classical eutrophied state, will need reduction of waste loads below certain thresholds and will be accompanied by large fluctuations in oxygen concentrations. We conclude that also flow-through systems, heavily influenced by external forcings which partly mask internal system dynamics, can display multiple stable states.
Do species traits determine patterns of wood production in Amazonian forests?
Authors: Baker T. R. , Phillips O. L. , Laurance W. F. , Pitman N. C. A. , Almeida S. , Arroyo L. , DiFiore A. , Erwin T. , Higuchi N. , Killeen T. J. , Laurance S. G. , Nascimento H. , Monteagudo A. , Neill D. A. , Silva J. N. M. , Malhi Y. , López Gonzalez G. , Peacock J. , Quesada C. A. , Lewis S. L. , Lloyd J.
Published: April 2010

Abstract. Understanding the relationships between plant traits and ecosystem properties at large spatial scales is important for predicting how compositional change will affect carbon cycling in tropical forests. In this study, we examine the relationships between species wood density, maximum height and above-ground, coarse wood production of trees ≥10 cm diameter (CWP) for 60 Amazonian forest plots. Average species maximum height and wood density are lower in Western than Eastern Amazonia and are negatively correlated with CWP. To test the hypothesis that variation in these traits causes the variation in CWP, we generate plot-level estimates of CWP by resampling the full distribution of tree biomass growth rates whilst maintaining the appropriate tree-diameter and functional-trait distributions for each plot. These estimates are then compared with the observed values. Overall, the estimates do not predict the observed, regional-scale pattern of CWP, suggesting that the variation in community-level trait values does not determine variation in coarse wood productivity in Amazonian forests. Instead, the regional gradient in CWP is caused by higher biomass growth rates across all tree types in Western Amazonia. Therefore, the regional gradient in CWP is driven primarily by environmental factors, rather than the particular functional composition of each stand. These results contrast with previous findings for forest biomass, where variation in wood density, associated with variation in species composition, is an important driver of regional-scale patterns in above-ground biomass. Therefore, in tropical forests, above-ground wood productivity may be less sensitive than biomass to compositional change that alters community-level averages of these plant traits.
Sensitivity analysis of a wetland methane emission model based on temperate and arctic wetland sites
Authors: van Huissteden J. , Petrescu A. M. R. , Hendriks D. M. D. , Rebel K. T.
Published: April 2010

Abstract. Modelling of wetland CH4 fluxes using wetland soil emission models is used to determine the size of this natural source of CH4 emission on local to global scale. Most process models of CH4 formation and soil-atmosphere CH4 transport processes operate on a plot scale. For large scale emission modelling (regional to global scale) upscaling of this type of model requires thorough analysis of the sensitivity of these models to parameter uncertainty. We applied the GLUE (Generalized Likelihood Uncertainty Analysis) methodology to a well-known CH4 emission model, the Walter-Heimann model, as implemented in the PEATLAND-VU model. The model is tested using data from two temperate wetland sites and one arctic site. The tests include experiments with different objective functions, which quantify the fit of the model results to the data. The results indicate that the model 1) in most cases is capable of estimating CH4 fluxes better than an estimate based on the data avarage, but does not clearly outcompete a regression model based on local data; 2) is capable of reproducing larger scale (seasonal) temporal variability in the data, but not the small-scale (daily) temporal variability; 3) is not strongly sensitive to soil parameters, 4) is sensitive to parameters determining CH4 transport and oxidation in vegetation, and the temperature sensitivity of the microbial population. The GLUE method also allowed testing of several smaller modifications of the original model. We conclude that upscaling of this plot-based wetland CH4 emission model is feasible, but considerable improvements of wetland CH4 modelling will result from improvement of wetland vegetation data.
The significance of organic carbon and nutrient export from peatland-dominated landscapes subject to disturbance, a stoichiometric perspective
Authors: Waldron S. , Flowers H. , Arlaud C. , Bryant C. , McFarlane S.
Published: April 2010

Abstract. The terrestrial-aquatic interface is a crucial environment in which to consider the fate of exported terrestrial carbon in the aquatic system. Here the fate of dissolved organic carbon (DOC) may be controlled by nutrient availability. However, peat-dominated headwater catchments are normally of low nutrient status and thus there is little data on how DOC and nutrient export co-varies. We present nutrient and DOC data for two UK catchments dominated by peat headwaters. One, Whitelee, is undergoing development for Europe's largest windfarm. Glen Dye by comparison is relatively undisturbed. At both sites there are significant linear relationships between DOC and soluble reactive phosphorus and nitrate concentrations in the drainage waters. However, inter-catchment differences exist. Changes in the pattern of nutrient and carbon export at Whitelee reveal that landscape disturbance associated with windfarm development impacts the receiving waters, and that nutrient export does not increase in a stoichiometric manner that will promote increase in microbial biomass but rather supports aquatic respiration. In turn greater CO2 efflux may prevail. Hence disturbance of terrestrial carbon stores may impact the both the aquatic and gaseous carbon cycle. We suggest estimates of aquatic carbon export should inform the decision-making process prior to development in ecosystems and catchments with high terrestrial carbon storage.
Similar patterns of patterns of community organization characterize distinct groups of different trophic levels in the plankton of the NW Mediterranean Sea
Authors: Raybaud V. , Tunin-Ley A. , Ritchie M. E. , Dolan J. R.
Published: April 2010

Abstract. Planktonic populations were sampled over a 4 week period in the NW Mediterranean, at a site subject to little vertical advection during the Dynaproc 2 cruise in 2004. The characteristics of the phytoplankton, the tintinnid community and the zooplankton have recently been described in detail. Based on these studies, we compared the characteristics of 3 well-circumscribed assemblages of different trophic levels: Ceratium of the phytoplankton, herbivorous tintinnids of the microzooplankton, and large (>500 μm) omnivorous and carnivorous copepods of the metazoan zooplankton. In all three groups, diversity as H' or species richness, was less variable than concentration of organisms. Plotting time against species accumulation, the curves approached plateau values for Ceratium spp, tintinnids and large copepods but only a small number of species were consistently present (core species) and these accounted for most of the populations. For Ceratium core species numbered 10, for tintinnids 11 species, and for large copepods, core species numbered 4 during the day and 16 at night. Ceratium, tintinnids and large copepods showed some similar patterns of community structure in terms of species abundance distributions. Ceratium species were distributed in a log-normal pattern. Tintinnid species showed a log-series distribution. Large copepod assemblages were highly dominated with night samples showing much higher abundances and greater species richness than day samples. However, species abundance distributions were similar between day and night and were mostly log-normal. The paradox of the plankton, describing phytoplankton communities as super-saturated with species, extends to the microzooplankton and zooplankton.
Fluxes of microbes, organic aerosols, dust, sea-salt Na ions, non-sea-salt Ca ions, and methanesulfonate onto Greenland and Antarctic ice
Authors: Price P. B. , Rohde R. A. , Bay R. C.
Published: April 2010

Abstract. Using a spectrofluorimeter with 224-nm laser excitation and six emission bands from 300 to 420 nm to measure fluorescence intensities at 0.3-mm depth intervals in ice cores, we report results of the first comparative study of concentrations of microbial cells (using the spectrum of protein-bound tryptophan (Trp) as a proxy) and of aerosols with autofluorescence spectra different from Trp (denoted "non-Trp") as a function of depth in ice cores from West Antarctica (WAIS Divide and Siple Dome) and Greenland (GISP2). The ratio of fluxes of microbial cells onto West Antarctic (WAIS Divide) versus Greenland sites is 0.13±0.06; the ratio of non-Trp aerosols onto WAIS Divide versus Greenland sites is 0.16±0.08; and the ratio of non-sea-salt Ca2+ ions (a proxy for dust grains) onto WAIS Divide versus Greenland sites is 0.06±0.03. All of these are roughly comparable to the ratio of fluxes of dust onto Antarctic versus Greenland sites (0.08±0.05). By contrast to those values, which are considerably lower than unity, the ratio of fluxes of methanesulfonate (MSA) onto Antarctic versus Greenland sites is 1.9±0.4 and the ratio of sea-salt Na2+ ions onto WAIS Divide versus Greenland sites is 3.0±2. These ratios are more than an order of magnitude higher than those in the first grouping. We infer that the correlation of microbes and non-Trp aerosols with non-sea-salt Ca and dust suggests a largely terrestrial rather than marine origin. The lower fluxes of microbes, non-Trp aerosols, non-sea-salt Ca and dust onto WAIS Divide ice than onto Greenland ice may be due to the smaller areas of their source regions and less favorable wind patterns for transport onto Antarctic ice than onto Greenland ice. The correlated higher relative fluxes of MSA and marine Na onto Antarctic versus Greenland ice is consistent with the view that both originate largely on or around sea ice, with the Antarctic sea ice being far more extensive than that around Greenland.
Optics and remote sensing of Bahamian carbonate sediment whitings and potential relationship to wind-driven Langmuir circulation
Authors: Dierssen H. M. , Zimmerman R. C. , Burdige D. J.
Published: April 2010

Abstract. Regions of milky white seas or "whitings" periodically occur to the west of Andros Island along the Great Bahama Bank where the bottom sediment consists of fine-grained aragonite mud. We present measurements of inherent optical properties within a sediment whiting patch and discuss the potential for monitoring the frequency, extent, and quantity of suspended matter from ocean colour satellite imagery. Sea spectral reflectance measured in situ and remotely from space revealed highly reflective waters elevated across the visible spectrum (i.e., "whitened") with a peak at 490 nm. Particulate backscattering was an order of magnitude higher than that measured at other stations throughout the region. The whiting also had one of the highest backscattering ratios measured in natural waters (0.05–0.06) consistent with water dominated by aragonite particles with a high index of refraction. Regular periodicity of 40 and 212 s evident in the light attenuation coefficient over the sampling period indicated patches of fluctuating turbidity on spatial scales that could be produced from regular rows of Langmuir cells penetrating the 5-m water column. We suggest that previously described mechanisms for sediment resuspension in whitings, such as tidal bursting and fish activity, are not fully consistent with these data and propose that wind-driven Langmuir cells reaching the full-depth of the water column may represent a plausible mechanism for sediment resuspension and subsequent whiting formation. Optics and remote sensing provide important tools for quantifying the linkages between physical and biogeochemical processes in these dynamic shallow water ecosystems.
Sub meso scale phytoplankton distribution in the North East Atlantic surface waters determined with an automated flow cytometer
Authors: Thyssen M. , Garcia N. , Denis M.
Published: April 2010

Abstract. Phytoplankton cells in the size range ~1–50 μm were analysed in surface waters using an automated flow cytometer, the Cytosub (http://www.cytobuoy.com), from the Azores to the French Brittany during spring 2007. The Cytosub records the pulse shape of the optical signals generated by phytoplankton cells when intercepted by the laser beam. A total of 6 distinct optical groups were resolved during the whole transect, and the high frequency sampling (15 min) provided evidence for the cellular cycle (based on cyclic changes in cell size and fluorescence) and distribution changes linked to the different water characteristics crossed in the North East Atlantic provinces. Nutrient concentrations and mixed layer depth varied from west to east, with a decrease in the mixed layer depth and high nutrient concentrations in the middle of the transect as well as near the French coast. Data provided a link between the sub meso scale processes and phytoplankton patchiness, some abundance variations due to the cellular cycle can be pointed out. The high frequency spatial sampling encompasses temporal variations of the phytoplankton abundance, offering a better insight into phytoplankton distribution.
Isoprene emission from wetland sedges
Authors: Ekberg A. , Arneth A. , Hakola H. , Hayward S. , Holst T.
Published: April 2010

Abstract. High latitude wetlands play an important role for the surface-atmosphere exchange of carbon dioxide (CO2) and methane (CH4), but fluxes of biogenic volatile organic compounds (BVOC) in these ecosystems have to date not been extensively studied. This is despite BVOC representing a measurable proportion of the total gaseous C fluxes at northern locations and in the face of the high temperature sensitivity of these systems that requires a much improved process understanding to interpret and project possible changes in response to climate warming. We measured emission of isoprene and photosynthetic gas exchange over two growing seasons (2005–2006) in a subarctic wetland in northern Sweden with the objective to identify the physiological and environmental controls of these fluxes on the leaf scale. The sedge species Eriophorum angustifolium and Carex rostrata were both emitters of isoprene. Springtime emissions were first detected after an accumulated diurnal mean temperature above 0°C of about 100 degree days. Maximum measured growing season standardized (basal) emission rates (20°C, 1000 μmol m−2 s−1) were 1075 (2005) and 1118 (2006) μg C m−2 (leaf area) h−1 in E. angustifolium, and 489 (2005) and 396 (2006) μg C m−2 h−1 in C. rostrata. Over the growing season, basal isoprene emission varied in response to the temperature history of the last 48 h. Seasonal basal isoprene emission rates decreased with leaf nitrogen (N), which may be explained by the typical growth and resource allocation pattern of clonal sedges as the leaves age. The observations were used to model emissions over the growing season, accounting for effects of temperature history, links to leaf assimilation rate and the light and temperature dependencies of the cold-adapted sedges.
Anthropogenic and natural CO2 exchange through the Strait of Gibraltar
Authors: Huertas I. E. , Ríos A. F. , García-Lafuente J. , Makaoui A. , Rodríguez-Gálvez S. , Sánchez-Román A. , Orbi A. , Ruíz J. , Pérez F. F.
Published: April 2010

Abstract. The exchange of both anthropogenic and natural inorganic carbon between the Atlantic Ocean and the Mediterranean Sea through Strait of Gibraltar was studied for a period of two years under the frame of the CARBOOCEAN project. A comprehensive sampling program was conducted, which was design to collect samples at eight fixed stations located in the Strait in successive cruises periodically distributed through the year in order to ensure a good spatial and temporal coverage. As a result of this monitoring, a time series namely GIFT (GIbraltar Fixed Time series) has been established, allowing the generation of an extensive data set of the carbon system parameters in the area. Data acquired during the development of nine campaigns were analyzed in this work. Total inorganic carbon concentration (CT) was calculated from alkalinity-pHT pairs and appropriate thermodynamic relationships, with the concentration of anthropogenic carbon (CANT) being also computed using two methods, the ΔC* and the TrOCA approach. Applying a two-layer model of water mass exchange through the Strait and using a value of −0.85 Sv for the average transport of the outflowing Mediterranean water recorded in situ during the considered period, a net export of inorganic carbon from the Mediterranean Sea to the Atlantic was obtained, which amounted to 25±0.6 Tg C yr−1. A net alkalinity output of 16±0.6 Tg C yr−1 was also observed to occur through the Strait. In contrast, the Atlantic water was found to contain a higher concentration of anthropogenic carbon than the Mediterranean water, resulting in a net flux of CANT towards the Mediterranean basin of 4.20±0.04 Tg C yr−1 by using the ΔC* method, which constituted the most adequate approach for this environment. A carbon balance in the Mediterranean was assessed and fluxes through the Strait are discussed in relation to the highly diverse estimates available in the literature for the area and the different approaches considered for CANT estimation. This work unequivocally confirms the relevant role of the Strait of Gibraltar as a controlling point for the biogeochemical exchanges occurring between the Mediterranean Sea and the Atlantic Ocean and emphasizes the influence of the Mediterranean basin in the carbon inventories of the North Atlantic.
Modelling the dynamic chemical interactions of atmospheric ammonia with leaf surface wetness in a managed grassland canopy
Authors: Burkhardt J. , Flechard C. R. , Gresens F. , Mattsson M. , Jongejan P. A. C. , Erisman J. W. , Weidinger T. , Meszaros R. , Nemitz E. , Sutton M. A.
Published: April 2010

Abstract. Ammonia exchange fluxes between grassland and the atmosphere were modelled on the basis of stomatal compensation points and leaf surface chemistry, and compared with measured fluxes during the GRAMINAE intensive measurement campaign in spring 2000 near Braunschweig, Germany. Leaf wetness and dew chemistry in grassland were measured together with ammonia fluxes and apoplastic NH4+ and H+ concentration, and the data were used to apply, validate and further develop an existing model of leaf surface chemistry and ammonia exchange. Foliar leaf wetness which is known to affect ammonia fluxes may be persistent after the end of rainfall, or sustained by recondensation of water vapour originating from the ground or leaf transpiration, so measured leaf wetness values were included in the model. pH and ammonium concentrations of dew samples collected from grass were compared to modelled values. The measurement period was divided into three phases: a relatively wet phase followed by a dry phase in the first week before the grass was cut, and a second drier week after the cut. While the first two phases were mainly characterised by ammonia deposition and occasional short emission events, regular events of strong ammonia emissions were observed during the post-cut period. A single-layer resistance model including dynamic cuticular and stomatal exchange could describe the fluxes well before the cut, but after the cut the stomatal compensation points needed to numerically match measured fluxes were much higher than the ones measured by bioassays, suggesting another source of ammonia fluxes. Considerably better agreement both in the direction and the size range of fluxes were obtained when a second layer was introduced into the model, to account for the large additional ammonia source inherent in the leaf litter at the bottom of the grass canopy. Therefore, this was found to be a useful extension of the mechanistic dynamic chemistry model by keeping the advantage of requiring relatively little site-specific information.