bluuebunny/crossref_metadata_2025 huggingface dataset:
Global Genome Mining Reveals the Distribution of Diverse Thioamidated RiPP Biosynthesis Gene Clusters
Authors: Malit Jessie James Limlingan , Wu Chuanhai , Liu Ling-Li , Qian Pei-Yuan
Published: April 2021

Thioamidated ribosomally synthesized and post-translationally modified peptides (RiPPs) are recently characterized natural products with wide range of potent bioactivities, such as antibiotic, antiproliferative, and cytotoxic activities. These peptides are distinguished by the presence of thioamide bonds in the peptide backbone catalyzed by the YcaO-TfuA protein pair with its genes adjacent to each other. Genome mining has facilitated an in silico approach to identify biosynthesis gene clusters (BGCs) responsible for thioamidated RiPP production. In this work, publicly available genomic data was used to detect and illustrate the diversity of putative BGCs encoding for thioamidated RiPPs. AntiSMASH and RiPPER analysis identified 613 unique TfuA-related gene cluster families (GCFs) and 797 precursor peptide families, even on phyla where the presence of these clusters have not been previously described. Several additional biosynthesis genes are colocalized with the detected BGCs, suggesting an array of possible chemical modifications. This study shows that thioamidated RiPPs occupy a widely unexplored chemical landscape.
Abundance Imparts Evolutionary Constraints of Similar Magnitude on the Buried, Surface, and Disordered Regions of Proteins
Authors: Dubreuil Benjamin , Levy Emmanuel D.
Published: April 2021

An understanding of the forces shaping protein conservation is key, both for the fundamental knowledge it represents and to allow for optimal use of evolutionary information in practical applications. Sequence conservation is typically examined at one of two levels. The first is a residue-level, where intra-protein differences are analyzed and the second is a protein-level, where inter-protein differences are studied. At a residue level, we know that solvent-accessibility is a prime determinant of conservation. By inverting this logic, we inferred that disordered regions are slightly more solvent-accessible on average than the most exposed surface residues in domains. By integrating abundance information with evolutionary data within and across proteins, we confirmed a previously reported strong surface-core association in the evolution of structured regions, but we found a comparatively weak association between disordered and structured regions. The facts that disordered and structured regions experience different structural constraints and evolve independently provide a unique setup to examine an outstanding question: why is a protein’s abundance the main determinant of its sequence conservation? Indeed, any structural or biophysical property linked to the abundance-conservation relationship should increase the relative conservation of regions concerned with that property (e.g., disordered residues with mis-interactions, domain residues with misfolding). Surprisingly, however, we found the conservation of disordered and structured regions to increase in equal proportion with abundance. This observation implies that either abundance-related constraints are structure-independent, or multiple constraints apply to different regions and perfectly balance each other.
Developing Proprioceptive Countermeasures to Mitigate Postural and Locomotor Control Deficits After Long-Duration Spaceflight
Authors: Macaulay Timothy R. , Peters Brian T. , Wood Scott J. , Clément Gilles R. , Oddsson Lars , Bloomberg Jacob J.
Published: April 2021

Astronauts experience post-flight disturbances in postural and locomotor control due to sensorimotor adaptations during spaceflight. These alterations may have adverse consequences if a rapid egress is required after landing. Although current exercise protocols can effectively mitigate cardiovascular and muscular deconditioning, the benefits to post-flight sensorimotor dysfunction are limited. Furthermore, some exercise capabilities like treadmill running are currently not feasible on exploration spaceflight vehicles. Thus, new in-flight operational countermeasures are needed to mitigate postural and locomotor control deficits after exploration missions. Data from spaceflight and from analog studies collectively suggest that body unloading decreases the utilization of proprioceptive input, and this adaptation strongly contributes to balance dysfunction after spaceflight. For example, on return to Earth, an astronaut’s vestibular input may be compromised by adaptation to microgravity, but their proprioceptive input is compromised by body unloading. Since proprioceptive and tactile input are important for maintaining postural control, keeping these systems tuned to respond to upright balance challenges during flight may improve functional task performance after flight through dynamic reweighting of sensory input. Novel approaches are needed to compensate for the challenges of balance training in microgravity and must be tested in a body unloading environment such as head down bed rest. Here, we review insights from the literature and provide observations from our laboratory that could inform the development of an in-flight proprioceptive countermeasure.
Retrieval of 30 Lymph Nodes Is Mandatory for Selected Stage II Gastric Cancer Patients
Authors: Chen Yong-He , Lu Jun , Nie Run-Cong , Liu Dan , Liu Ai-Hong , Deng Zi-Jian , Chen Xi-Jie , Xiang Jun , Chen Ying-Bo , Huang Chang-Ming , Chen Shi , Peng Jun-Sheng
Published: April 2021

Background

According to the 8th edition AJCC staging manual, a least of 16 lymph nodes retrieval (LNRs) is the minimal requirement for lymph nodes (LNs) dissection of gastric cancer surgery. Previous studies have shown that increasing the number of LNRs (≥30) prolongs survival for selected patients. However, the necessity of retrieving 30 or more LN for stage II gastric cancer patients is still under debate.

Aim

This study aims to explore the impact of retrieving 30 or more lymph nodes on the survival of stage II cancer patients.

Methods

A total of 1,177 patients diagnosed with stage II gastric cancer were enrolled in this study. The clinicopathological parameters and the impact of different LNRs (<30 or ≥30) and positive lymph node ratio (NR) on overall survival (OS) were retrospectively analyzed.

Results

The mean number of LNRs was 34 ± 15. A total of 44% (518/1,177) of patients had an LNRs <30, while 56% (659/1,177) of patients had an LNRs ≥30. The 5-year survival rate was 81% for all patients, 76% for the LNRs <30 group, and 86% for LNRs ≥30 group, respectively (P = 0.003). The survival benefit of retrieving 30 lymph nodes was significant in certain subgroups: age >60 years/male/underwent total gastrectomy/stage IIB. For N+ patients, higher NR was significantly correlated with poor survival.

Conclusion

The survival benefit of retrieving 30 LNs varies in different subgroups. An LNRs of 30 is mandatory for selected stage II gastric cancer patients.
Metastatic Colorectal Cancer Patient With Microsatellite Stability and BRAFV600E Mutation Showed a Complete Metabolic Response to PD-1 Blockade and Bevacizumab: A Case Report
Authors: Fang Chongkai , Lin Jietao , Zhang Tao , Luo Jiajun , Nie Duorui , Li Meng , Hu Xue , Zheng Yating , Huang Xuewu , Xiao Zhiwei
Published: April 2021

A vast majority of colorectal cancer (CRC) patients with microsatellite stability (MSS) or proficient mismatch repair (pMMR) are refractory to immunotherapeutic strategies. The current research focusses on the combined treatment strategies for identification and optimization in order to improve the efficacy of immunotherapy among patients with microsatellite stability (MSS), who account for the majority of metastatic colorectal cancer (mCRC) cases. mCRC patients harboring MSS and the BRAFV600E mutation show a worse prognosis and barely benefit from immunotherapy. In this report, we discuss the case of a mCRC patient with MSS and BRAFV600E mutation, who exhibited significant response to the combined treatment with nivolumab and bevacizumab, and has been exhibiting a progression-free survival (PFS) of more than 17 months. Our findings indicate that combined anti-angiogenic therapy can improve the efficacy of immunotherapy, which results in the prolong survival of the patient. This is a case report on MSS and BRAFV600E colorectal cancer which presents with a response to immunotherapy and anti-angiogenic therapy.
Can Risk Stratification Based on Ultrasound Elastography of Background Liver Assist CEUS LI-RADS in the Diagnosis of HCC?
Authors: Li Jiawu , Ling Wenwu , Chen Shuang , Yang Lulu , Ma Lin , Lu Qiang , Luo Yan
Published: April 2021

Objective

To explore whether risk stratification based on ultrasound elastography of liver background assists contrast-enhanced ultrasound liver imaging reporting and data system (CEUS LI-RADS) in diagnosing HCC.

Materials and Methods

In total, 304 patients with focal liver lesions (FLLs) confirmed by pathology underwent CEUS and ultrasound elastography were included in this retrospective study. Patients with chronic hepatitis B (CHB, n=193) and non-CHB (n=111) were stratified by four liver stiffness measurement (LSM) thresholds. A LI-RADS category was assigned to FLLs using CEUS LI-RADS v2017. The diagnostic performance was assessed with the AUC, sensitivity, specificity, PPV, and NPV.

Results

The mean background liver stiffness of HCC patients with CHB, HCC patients without CHB and non-HCC patients without CHB were 9.72 kPa, 8.23 kPa and 4.97 kPa, respectively. The AUC, sensitivity, specificity and PPV of CEUS LI-RADS for HCC in CHB patients with LSM ≥ 5.8 kPa, ≥ 6.8 kPa, ≥ 9.1 kPa, and ≥ 10.3 kPa were high, with corresponding values of 0.745 to 0.880, 94.2% to 95.3%, 81.3% to 85.7%, and 98.1% to 98.8%, respectively. Higher AUC and specificity for HCC was observed in non-CHB patients with LSM ≥ 9.1 kPa and ≥ 10.3 kPa compared to non-CHB patients with LSM ≥ 5.8 kPa and ≥ 6.8 kPa, with corresponding values of0.964/1.000 vs 0.590/0.580, and 100%/100% vs 60%/70%, respectively.

Conclusion

CEUS LI-RADS has a good diagnostic performance in CHB patients regardless of the background liver stiffness. Furthermore, CEUS LI-RADS can be applied for non-CHB patients with a LSM ≥ 9.1 kPa.
Comparative Analysis of Compatibility Influence on Invigorating Blood Circulation for Combined Use of Panax Notoginseng Saponins and Aspirin Using Metabolomics Approach
Authors: Sun Zongxi , Wu Huichao , Wu Yali , Wang Chenglong , Wang Yu , Hu Shaonan , Du Shouying
Published: April 2021

The combined use of Panax notoginseng saponins (PNS)–based drugs and aspirin (ASA) to combat vascular diseases has achieved good clinical results. In this study, the superior efficacy was observed via the combined use of PNS and ASA on acute blood stasis rats, and untargeted metabolomics was performed to holistically investigate the therapeutic effects of coupling application and its regulatory mechanisms. The combined use of PNS and ASA exhibited better improvement effects when reducing the evaluated hemorheological indicators (whole blood viscosity, plasma viscosity, platelet aggregation, and fibrinogen content) in the blood stasis rats vs. single use of PNS or ASA at the same dose. The combined use of both drugs was the most effective application method, as shown by the relative distance in partial least-squares discriminant analysis score plots. Twelve metabolites associated with blood stasis were screened as potential biomarkers and were mainly involved in amino acid metabolism, lipid metabolism, and energy metabolism. After coherently treated with PNS and ASA, the altered metabolites could be partially adjusted to be closer to normal levels than single use. The collective results revealed that PNS could cooperate with ASA to treat blood stasis and provided a scientific explanation for the superior efficacy of their combined use.
Implementing Clinical Decision Support Tools and Pharmacovigilance to Reduce the Use of Potentially Harmful Medications and Health Care Costs in Adults With Heart Failure
Authors: Silva Almodóvar Armando , Nahata Milap C.
Published: April 2021

Heart failure (HF) is associated with significant morbidity, mortality, compromised quality of life and socioeconomic burden worldwide. This chronic condition is becoming an increasingly important concern given the increased prevalence of HF among aging populations. Significant contributors toward escalating health care costs are emergency room visits and hospitalizations associated with HF. An important strategy to improve health care outcomes and reduce unnecessary costs is to identify and reduce the prescribing of potentially harmful medications (PHMs) among adults with HF. Previous studies in patients with HF found roughly 10–50% of them were prescribed at least one PHM in ambulatory care and inpatient health care settings. This opinion highlights recent findings from studies assessing prevalence of PHMs, associations between PHM prescribing and characteristics, and what can be done to improve patient outcomes and reduce the use of PHMs and associated health care costs in adults with HF.
Locus Coeruleus to Paraventricular Thalamus Projections Facilitate Emergence From Isoflurane Anesthesia in Mice
Authors: Ao Yawen , Yang Bo , Zhang Caiju , Wu Bo , Zhang Xuefen , Xing Dong , Xu Haibo
Published: April 2021

Locus coeruleus (LC) sends widespread outputs to many brain regions to modulate diverse functions, including sleep/wake states, attention, and the general anesthetic state. The paraventricular thalamus (PVT) is a critical thalamic area for arousal and receives dense tyrosine-hydroxylase (TH) inputs from the LC. Although anesthesia and sleep may share a common pathway, it is important to understand the processes underlying emergence from anesthesia. In this study, we hypothesize that LC TH neurons and the TH:LC-PVT circuit may be involved in regulating emergence from anesthesia. Only male mice are used in this study. Here, using c-Fos as a marker of neural activity, we identify LC TH expressing neurons are active during anesthesia emergence. Remarkably, chemogenetic activation of LC TH neurons shortens emergence time from anesthesia and promotes cortical arousal. Moreover, enhanced c-Fos expression is observed in the PVT after LC TH neurons activation. Optogenetic activation of the TH:LC-PVT projections accelerates emergence from anesthesia, whereas, chemogenetic inhibition of the TH:LC-PVT circuit prolongs time to wakefulness. Furthermore, optogenetic activation of the TH:LC-PVT projections produces electrophysiological evidence of arousal. Together, these results demonstrate that activation of the TH:LC-PVT projections is helpful in facilitating the transition from isoflurane anesthesia to an arousal state, which may provide a new strategy in shortening the emergence time after general anesthesia.
Laser-Induced Nuclear Damage Signaling and Communication in Astrocyte Networks Through Parp-Dependent Calcium Oscillations
Authors: Wakida Nicole M. , Ha Ryan D. , Kim Edward K. , Kong Xiangduo , Yokomori Kyoko , Berns Michael W.
Published: April 2021

Astrocytes are known to respond to various perturbations with oscillations of calcium, including to cellular injury. Less is known about astrocytes’ ability to detect DNA/nuclear damage. This study looks at changes in calcium signaling in response to laser-induced nuclear damage using a NIR Ti:Sapphire laser. Primary astrocytes derived from genetically engineered mice expressing G6Campf genetically encoded calcium indicator were imaged in response to laser induced injury. Combining laser nanosurgery with calcium imaging of primary astrocytes allow for spatial and temporal observation of the astrocyte network in response to nuclear damage. Nuclear damage resulted in a significant increase in calcium peak frequency, in nuclear damaged cells and astrocytes directly attached to it. The increase in calcium event frequency observed in response to damage and the transfer to neighboring cells was not observed in cytoplasm damaged cells. Targeted astrocytes and attached neighboring cells treated with Poly (ADP-ribose) polymerase inhibitor have a significantly lower peak frequency following laser damage to the nucleus. These results indicate the increase in calcium peak frequency following nuclear damage is poly (ADP-ribose) polymerase dependent.
DsbA-L Ameliorates Renal Injury Through the AMPK/NLRP3 Inflammasome Signaling Pathway in Diabetic Nephropathy
Authors: Yang Ming , Luo Shilu , Jiang Na , Wang Xi , Han Yachun , Zhao Hao , Xiong Xiaofen , Liu Yan , Zhao Chanyue , Zhu Xuejing , Sun Lin
Published: April 2021

NLRP3-mediated inflammation is closely related to the pathological progression of diabetic nephropathy (DN). DsbA-L, an antioxidant enzyme, plays a protective role in a variety of diseases by inhibiting ER stress and regulating metabolism. However, the relationship of DsbA-L with inflammation, especially the NLRP3 inflammasome, has not been examined. In this study, we note that activation of the NLRP3 inflammasome and exacerbated fibrosis were observed in the kidneys of diabetic DsbA-L-knockout mice and were accompanied by decreased phosphorylation of AMP-activated protein kinase (AMPK). Moreover, correlation analysis shows that the phosphorylation of AMPK was negatively correlated with NLRP3 expression and tubular damage. In addition, the decreased AMPK phosphorylation and NLRP3 activation induced by high glucose (HG) in HK-2 cells could be alleviated by the overexpression of DsbA-L. Interestingly, the protective effect of DsbA-L was eliminated after treatment with compound C, a well-known AMPK inhibitor. Our findings suggest that DsbA-L inhibits NLRP3 inflammasome activation by promoting the phosphorylation of AMPK.
Why Consumers Prefer Green Friariello Pepper: Changes in the Protein and Metabolite Profiles Along the Ripening
Authors: Tartaglia Maria , Sciarrillo Rosaria , Zuzolo Daniela , Amoresano Angela , Illiano Anna , Pinto Gabriella , Jorrín-Novo Jesús V. , Guarino Carmine
Published: April 2021

Fruit ripening is a physiologically complex process altering texture, color, flavor, nutritional value, and aroma. However, some fruits are consumed at an early stage of ripening due to the very peculiar characteristics varying during ripening. An example is a particular ecotype of pepper, the Friariello pepper, among the most important representatives of Campania (Southern Italy) agro-alimentary culture. In this study, for the first time, the physiological variations during Friariello ripening (green, veraison, and fully ripe) were evaluated by hyphenated mass spectrometric techniques in a proteomic and metabolomic approach. We found that Lutein and Thaumatin are particularly abundant in the green Friariello. Friariello at an early stage of ripening, is rich in volatile compounds like butanol, 1 3 5-cycloheptatriene, dimethylheptane, α-pinene, furan-2-penthyl, ethylhexanol, 3-carene, detected by gas chromatography-mass spectrometry (GC-MS) analysis, which give it the peculiar fresh and pleasant taste. The detected features of Friariello may justify its preferential consumption in the early ripening stage and outline new knowledge aimed at preserving specific agro-cultural heritage.
Giving Up on Consciousness as the Ghost in the Machine
Authors: Halligan Peter W. , Oakley David A.
Published: April 2021

Consciousness as used here, refers to the private, subjective experience of being aware of our perceptions, thoughts, feelings, actions, memories (psychological contents) including the intimate experience of a unified self with the capacity to generate and control actions and psychological contents. This compelling, intuitive consciousness-centric account has, and continues to shape folk and scientific accounts of psychology and human behavior. Over the last 30 years, research from the cognitive neurosciences has challenged this intuitive social construct account when providing a neurocognitive architecture for a human psychology. Growing evidence suggests that the executive functions typically attributed to the experience of consciousness are carried out competently, backstage and outside subjective awareness by a myriad of fast, efficient non-conscious brain systems. While it remains unclear how and where the experience of consciousness is generated in the brain, we suggested that the traditional intuitive explanation that consciousness is causally efficacious is wrong-headed when providing a cognitive neuroscientific account of human psychology. Notwithstanding the compelling 1st-person experience (inside view) that convinces us that subjective awareness is the mental curator of our actions and thoughts, we argue that the best framework for building a scientific account is to be consistent with the biophysical causal dependency of prior neural processes. From a 3rd person perspective, (outside view), we propose that subjective awareness lacking causal influence, is (no more) than our experience of being aware, our awareness of our psychological content, knowing that we are aware, and the belief that that such experiences are evidence of an agentive capacity shared by others. While the human mind can be described as comprising both conscious and nonconscious aspects, both ultimately depend on neural process in the brain. In arguing for the counter-intuitive epiphenomenal perspective, we suggest that a scientific approach considers all mental aspects of mind including consciousness in terms of their underlying, preceding (causal) biological changes, in the realization that most brain processes are not accompanied by any discernible change in subjective awareness.
Paranoia and Grandiosity in the General Population: Differential Associations With Putative Causal Factors
Authors: Sheffield Julia M. , Brinen Aaron P. , Freeman Daniel
Published: April 2021

Worry, negative self-beliefs, and sleep disturbance have been identified as contributory factors to the onset, maintenance, and severity of paranoia. We tested the specificity of these contributory factors to paranoia compared to grandiosity, a different type of delusional ideation. Data were used from 814 adults from the Nathan Kline Institute-Rockland (NKI-Rockland) study, a general population dataset. Paranoid and grandiose delusional ideation was assessed using the Peters Delusions Inventory (PDI-21) and correlated with self-reported worry (n= 228), negative self-beliefs (n= 485), and sleep quality (n= 655). Correlations were compared using Fisher's r-to-z transform to examine whether the magnitude of relationships differed by delusion type. Paranoia was significantly associated with worry, negative self-belief, and sleep quality. Grandiosity demonstrated significantly weaker relationships with worry and negative self-beliefs. Relationships with sleep quality were similar. We replicate previous reports that worry, negative self-beliefs and sleep quality are associated with paranoid ideation in the general population. We extend these findings by demonstrating that these contributory factors, particularly worry and negative self-beliefs, are associated with paranoid ideation to a greater extent than grandiosity. This suggests a degree of specificity of contributory factors to different types of delusional thinking, supporting the pursuit of specific psychological models and treatments for each delusion type.
Review of the Microbiological Diagnostic Approaches of COVID-19
Authors: Melo-Vallès Ada , Ballesté-Delpierre Clara , Vila Jordi
Published: April 2021

On March 12, the World Health Organization declared a pandemic following the exponential increase of SARS-CoV-2 cases. The rapid spread of the virus is due to both its high infectivity and the free circulation of unrecognized infectious cases. Thus, diagnostic testing is a key element to prevent further dissemination of the virus. Urged by WHO's call, laboratories worldwide have been working on nucleic acid tests protocols and immunoassays that became available, albeit poorly validated, within a comparatively short time. Since then, external studies evaluating these diagnostic tests have been published. The present study is a review of the COVID-19 diagnostic approaches, discussing both direct and indirect microbiological diagnoses. A compendium of the literature on commercial assays kits available to date is provided together with the conclusions drawn as well as RT-PCR protocols published by the WHO. Briefly, diagnostic accuracy varies according to time elapsed since symptom onset and evolves together with understanding of the COVID-19 disease. Taking into account all these variables will allow determining the most adequate diagnostic test to use and how to optimize diagnostic testing for COVID-19.
Forecasting the 2020 COVID-19 Epidemic: A Multivariate Quasi-Poisson Regression to Model the Evolution of New Cases in Chile
Authors: Vicuña María Ignacia , Vásquez Cristián , Quiroga Bernardo F.
Published: April 2021

Objectives:To understand and forecast the evolution of COVID-19 (Coronavirus disease 2019) in Chile, and analyze alternative simulated scenarios to better predict alternative paths, in order to implement policy solutions to stop the spread and minimize damage.

Methods:We have specified a novel multi-parameter generalized logistic growth model, which does not only look at the trend of the data, but also includes explanatory covariates, using a quasi-Poisson regression specification to account for overdispersion of the count data. We fitted our model to data from the onset of the disease (February 28) until September 15. Estimating the parameters from our model, we predicted the growth of the epidemic for the evolution of the disease until the end of October 2020. We also evaluated via simulations different fictional scenarios for the outcome of alternative policies (those analyses are included in theSupplementary Material).

Results and Conclusions:The evolution of the disease has not followed an exponential growth, but rather, stabilized and moved downward after July 2020, starting to increase again after the implementation of theStep-by-Steppolicy. The lockdown policy implemented in the majority of the country has proven effective in stopping the spread, and the lockdown-relaxation policies, however gradual, appear to have caused an upward break in the trend.
Electrolyzed Water Generated On-Site as a Promising Disinfectant in the Dental Office During the COVID-19 Pandemic
Authors: Farah Ra'fat Ibrahim , Al-Haj Ali Sanaa Najeh
Published: April 2021

Electrolyzed water is a safe, broad-spectrum bactericidal and viricidal agent, which can be used as a potent and effective alternative disinfectant in case of supply shortages. This report describes the on-site production of slightly acidic electrolyzed water (EW) from diluted salt solution and vinegar at a dental office using a portable EW generator unit. Such measures can ensure the safe continuity of important dental service provision for our patients during the coronavirus disease 2019 (CoVID-19) pandemic.
Humor and Fear—Two Sides of the Same Coin?: Experimental Evidence on Humor Appeals in Health Communication Related to Childhood Vaccination
Authors: Fischer Florian , Carow Franziska , Gillitzer Stefanie
Published: April 2021

Until now, health communication has largely failed to debunk fears and caveats related to vaccination. This study aims to investigate the effects of different text types used in health communication in an experimental study design. A neutrally formulated text was compared to a humorous text using the formula of a fairytale. Overall, the study indicates no additional value in using the humorous format as an innovative and target-group-oriented approach to inform readers about scientific evidence related to vaccination. Although the effects of the two text types do not differ, the credibility of the neutrally formulated text was much more likely to be judged as high. This indicates that the perception of credibility is not the only criterion in health communication leading to knowledge gains and changes in health-related attitudes and behaviors.
A Review of Beef Production Systems for the Sustainable Use of Surplus Male Dairy-Origin Calves Within the UK
Authors: Rutherford Naomi H. , Lively Francis O. , Arnott Gareth
Published: April 2021

The UK dairy herd is predominantly of the Holstein-Friesian (HF) breed, with a major emphasis placed on milk yield. Subsequently, following years of continued single-trait selection, the beef production potential of dairy bred calves has declined. Thus, male HF calves are commonly seen as a by-product of the dairy industry. Limited markets, perceived low economic value and high rearing costs mean that these surplus calves are often euthanised shortly after birth or exported to the EU for further production. Welfare concerns have been raised regarding both euthanasia and long distance transportation of these calves. Furthermore, total UK beef consumption increased by 8.5% from 2009 to 2019. Thus, in light of this growing demand, beef from the dairy herd could be better utilized within the UK. Therefore, the potential for these calves to be used in a sustainable, cost-effective beef production system with high welfare standards within the UK requires investigation. Thus, the aim of this review was to evaluate both steer and bull beef production systems, examining the impact on performance, health, welfare, and economic potential to enable a sustainable farming practice, while meeting UK market requirements. The principal conclusions from this review indicate that there is the potential for these calves to be used in UK based production systems and meet market requirements. Of the steer production systems, a 24 month system appears to achieve a balance between input costs, growth from pasture and carcass output, albeit the literature is undecided on the optimum system. The situation is similar for bull beef production systems, high input systems do achieve the greatest gain in the shortest period of time, however, these systems are not sustainable in volatile markets with fluctuating concentrate prices. Thus, again the inclusion of a grazing period, may increase the resilience of these systems. Furthermore, production systems incorporating a period at pasture are seen to have animal welfare benefits. The main welfare concern for surplus dairy bred calves is often poor colostrum management at birth. While in steer systems, consideration needs to be given to welfare regarding castration, with the negative impacts being minimized by completing this procedure soon after birth.
RETRACTED: Effects of Gallotannin-Enriched Extract of Galla Rhois on the Activation of Apoptosis, Cell Cycle Arrest, and Inhibition of Migration Ability in LLC1 Cells and LLC1 Tumors
Authors: Kang Mi Ju , Kim Ji Eun , Park Ji Won , Choi Hyun Jun , Bae Su Ji , Choi Sun Il , Hong Jin Tae , Hwang Dae Youn
Published: April 2021

Gallotannin (GT) and GT-enriched extracts derived from various sources are reported to have anti-tumor activity in esophageal, colon and prostate tumors, although their anti-tumor effects have not been determined in lung carcinomas. To investigate the anti-tumor activity of GT-enriched extract of galla rhois (GEGR) against lung carcinomas, alterations in the cytotoxicity, apoptosis activation, cell cycle progression, migration ability, tumor growth, histopathological structure, and the regulation of signaling pathways were analyzed in Lewis lung carcinoma (LLC1) cells and LLC1 tumor bearing C57BL/6NKorl mice, after exposure to GEGR. A high concentration of GT (69%) and DPPH scavenging activity (IC50=7.922 µg/ml) was obtained in GEGR. GEGR treatment exerted strong cytotoxicity, cell cycle arrest at the G2/M phase and subsequent activation of apoptosis, as well as inhibitory effects on the MAPK pathway and PI3K/AKT mediated cell migration in LLC1 cells. In the in vivo syngeneic model, exposure to GEGR resulted in suppressed growth of the LLC1 tumors, as well as inhibition of NF-κB signaling and their inflammatory cytokines. Taken together, our results provide novel evidence that exposure to GEGR induces activation of apoptosis, cell cycle arrest, and inhibition of cell migration via suppression of the MAPK, NF-κB and PI3K/AKT signaling pathways in LLC1 cells and the LLC1 syngeneic model.
Road Roughness Estimation Based on the Vehicle Frequency Response Function
Authors: Zhang Qingxia , Hou Jilin , Duan Zhongdong , Jankowski Łukasz , Hu Xiaoyang
Published: April 2021

Road roughness is an important factor in road network maintenance and ride quality. This paper proposes a road-roughness estimation method using the frequency response function (FRF) of a vehicle. First, based on the motion equation of the vehicle and the time shift property of the Fourier transform, the vehicle FRF with respect to the displacements of vehicle–road contact points, which describes the relationship between the measured response and road roughness, is deduced and simplified. The key to road roughness estimation is the vehicle FRF, which can be estimated directly using the measured response and the designed shape of the road based on the least-squares method. To eliminate the singular data in the estimated FRF, the shape function method was employed to improve the local curve of the FRF. Moreover, the road roughness can be estimated online by combining the estimated roughness in the overlapping time periods. Finally, a half-car model was used to numerically validate the proposed methods of road roughness estimation. Driving tests of a vehicle passing over a known-sized hump were designed to estimate the vehicle FRF, and the simulated vehicle accelerations were taken as the measured responses considering a 5% Gaussian white noise. Based on the directly estimated vehicle FRF and updated FRF, the road roughness estimation, which considers the influence of the sensors and quantity of measured data at different vehicle speeds, is discussed and compared. The results show that road roughness can be estimated using the proposed method with acceptable accuracy and robustness.
Experimental Study of Abrasive Waterjet Cutting for Managing Residues in No-Tillage Techniques
Authors: Perotti Francesco , Annoni Massimiliano , Calcante Aldo , Monno Michele , Mussi Valerio , Oberti Roberto
Published: April 2021

A laboratory investigation of abrasive waterjet cutting of wheat straws was conducted. The work was aimed at a systematic characterization of the abrasive waterjet cutting capability of wheat straws, as a potential alternative to cutting discs currently adopted in no-till drills and planters for crop residue management. A two level 2IV7−3 fractional factorial design was applied to investigate the influence of abrasive waterjet process parameters on the cutting efficiency of wheat straws. Straw coverage thickness, water pressure, and orifice diameter were found to be the most significant ones. Experimental results suggest that straw cutting mechanism is mostly related to the hydraulic power of the jet. A multiple logistic regression was performed to model the relationship between the cutting efficiency and the jet power. The logistic model was then applied to estimate the average water and power consumption for wheat straw cutting during a no-tillage seeding operation. An average jet hydraulic power of 6400 W would be sufficiently high to guarantee 90% cutting efficiency in presence of heavy residue distribution. The experimental study shows that a small quantity of abrasive powder (50 g·min−1) allows one to increase the jet cutting capability of wheat straws, and to reduce the required maximum hydraulic power, compared to pure waterjet cutting. Results show are potentially relevant for field validation in agriculture based on no-tillage.
Analysis of Cytosine Methylation in Genomic DNA of Solanum × michoacanum (+) S. tuberosum Somatic Hybrids
Authors: Smyda-Dajmund Paulina , Śliwka Jadwiga , Villano Clizia , Janiszewska Marta , Aversano Riccardo , Bednarek Piotr Tomasz , Carputo Domenico , Zimnoch-Guzowska Ewa
Published: April 2021

Interspecific somatic hybridization is a noteworthy breeding strategy that allows the production of novel genetic variability when crossing barriers exist between two parental species. Although the genetic consequences of somatic hybridization have been well documented, little is known on its impact at the epigenetic level. The objective of our research was to investigate the epigenetic changes, in particular DNA methylation, occurring in a population of potato somatic hybrids. The analysis of 96 Solanum × michoacanum (+) S. tuberosum somatic hybrids from five fusion combinations and their parents was carried out by methylation-sensitive amplified polymorphism (MSAP) and high-performance liquid chromatography (HPLC) methods. Six MSAP primer combinations generated 622 unique bands, of which 295 were fully methylated. HPLC analysis showed from 15.5% to 16.9% total cytosine methylation within the parental forms. Overall, the MSAP and HPLC methods indicated an increase in DNA methylation in the somatic hybrids in comparison to their parents. Among the latter, a lower degree of DNA methylation in the wild S. × michoacanum species than S. tuberosum was found. Our findings indicated that somatic hybridization changed the level of cytosine methylation in the studied potato somatic hybrids.
Protein and Carbohydrate Fractions in Warm-Season Pastures: Effects of Nitrogen Management Strategies
Authors: Berça Andressa S. , Cardoso Abmael da S. , Longhini Vanessa Z. , Tedeschi Luís O. , Boddey Robert Michael , Reis Ricardo A. , Ruggieri Ana Cláudia
Published: April 2021

Nitrogen (N) management affects herbage production and chemical composition; however, information on the impact of tropical herbage on N and carbohydrate fractions is scarce. A two-year study was conducted to investigate the potential use of pintoi peanut (Arachis pintoi) compared with N fertilization of palisade grass (Brachiariabrizantha cv. Marandu) by evaluating the herbage chemical composition (fractionation of protein and carbohydrate), herbage mass and accumulation rate, herbage disappearance rate, and stocking rate of pastures. The experiment was conducted in a completely randomized design with three treatments, and four replications (paddocks) were used with twenty-one non-lactating crossbred dairy heifers. Treatments consisted of pastures of palisade grass without a N source (control), fertilized with urea (150 kg/ha/year; fertilized), or mixed with pintoi peanut (mixed). Inclusion of the legume increased concentrations of fractions A (p = 0.009), which is the soluble N compound, and B3 (p < 0.001), which is slowly degraded true protein, compared with pastures fertilized with N and non-fertilized pastures. Nitrogen fertilization increased fraction B1 + B2 (p = 0.046), mainly true proteins, and decreased fraction C (p = 0.0007), indigestible protein, and neutral detergent fiber concentrations (p = 0.0003), contributing to increasing the nutritive value of the herbage. Additionally, N fertilization increased herbage mass (p = 0.004) and herbage allowance (p = 0.0001). Both N fertilization and biologically fixed N increased herbage allowance (p = 0.02) and accumulation rate (p = 0.02), as well as the crude protein content of herbage (p < 0.0001) compared with non-fertilized pastures. Nitrogen fertilization increased true protein and decreased indigestible protein of herbage and promoted a greater herbage mass production, while the inclusion of legumes increased soluble protein and decreased the slowly degraded true protein of herbage. Both N management strategies increased herbage allowance and accumulation rate.
Serotyping and Antimicrobial Resistance Profile of Enteric Nontyphoidal Salmonella Recovered from Febrile Neutropenic Patients and Poultry in Egypt
Authors: Youssef Reem A. , Abbas Ahmad M. , El-Shehawi Ahmed M. , Mabrouk Mona I. , Aboshanab Khaled M.
Published: April 2021

A total of 300 human fecal samples were collected from febrile neutropenic patients suffering from severe gastroenteritis, followed by identification and serological characterization of recovered isolates. Fifty nontyphoidal Salmonella (NTS) serovars were recovered. A total of serologically identified 50 NTS serovars recovered from poultry of the same geographical area and during the same period as well as one standard strain S. Poona were supplied by the Bacterial Bank of Animal Health Research Institute of Egypt. Antibiogram analysis revealed that the human and poultry serovars exhibited similar antimicrobial resistance patterns against 28 different antimicrobial agents, particularly against ampicillin, cefotaxime, oxytetracycline, and erythromycin. Plasmids harboring blaCTX-m, blaSHV, blaTEM, and aac(6’)-Ib were detected in 11 (22%) and 8 (16%) of human and poultry serovars, respectively. Molecular detection of the most clinically relevant virulence genes and analysis of the associated virulence genotypes proved that the human (n = 11) and poultry serovars (n = 12) shared 11 genotypes. Enterobacterial repetitive intergenic consensus PCR analysis revealed that human and poultry serovars were clustered together in 3 out of the 4 clusters with a similarity index ranged from 0.15 to 1. Since poultry are usually consumed by humans, the presence of resistant bacteria harboring transmissible genetic elements is of great health concern.
Association between Antimicrobial Peptide Histatin 5 Levels and Prevalence of Candida in Saliva of Patients with Down Syndrome
Authors: Komatsu Tomoko , Watanabe Kiyoko , Hamada Nobushiro , Helmerhorst Eva , Oppenheim Frank , Lee Masaichi Chang-il
Published: April 2021

There are no studies on Candida colonization and micropeptides of saliva in any patient. Therefore, we studied the effects of the salivary antimicrobial peptide histatin 5 on oral fungal colonization; subjects were subdivided into Down syndrome (D) and normal (N) groups by age: N-1 and D-1, age <20 years; N-2 and D-2, age >40 years. Histatin 5 concentration in saliva was measured by enzyme-linked immunosorbent assay. Oral Candida species were identified using CHROMagar Candida. Candida colonization was significantly enhanced in the D-1 and D-2 groups compared to the N-1 and N-2 groups. There was no predominant difference in salivary histatin 5 concentration between the D-1 and N-1 groups, but it was significantly lower in the D-2 group than in the N-2 group. Only in the N-2 group was there a correlation between the concentration of histatin 5 and total protein, while no correlation was found in the other groups. In elderly patients with Down syndrome, the decrease in histatin 5 shown in this study may lead to oral Candida colony formation. Therefore, the results of this study suggest that a deficiency of the antimicrobial peptide histatin 5 could possibly induce oral Candida infection in DS.
Effects of (–)-Loliolide against Fine Dust Preconditioned Keratinocyte Media-Induced Dermal Fibroblast Inflammation
Authors: Fernando Ilekuttige Priyan Shanura , Dias Mawalle Kankanamge Hasitha Madhawa , Madusanka Dissanayaka Mudiyanselage Dinesh , Kim Hyun-Soo , Han Eui-Jeong , Kim Min-Ju , Seo Min-Jeong , Ahn Ginnae
Published: April 2021

At present air pollution in parts of East Asia is at an alarming level due to elevated levels of fine dust (FD). Other than pulmonary complications, FD was found to affect the pathogenesis of ROS-dependent inflammatory responses via penetrating barrier-disrupted skin, leading to degradation of extracellular matrix components through the keratinocyte-fibroblast axis. The present study discloses the evaluation of human dermal fibroblast (HDF) responses to FD preconditioned human keratinocyte media (HPM) primed without and with (-)-loliolide (HTT). HPM-FD treatment increased the ROS level in HDFs and activated mitogen-activated protein kinase-derived nuclear factor (NF)-κB inflammatory signaling pathways with a minor reduction of viability. The above events led to cell differentiation and production of matrix metalloproteinases (MMP), increasing collagenase and elastase activity despite the increase of tissue inhibitors of metalloproteinases (TIMP). Media from HTT primed keratinocytes stimulated with FD indicated ameliorated levels of MMPs, inflammatory cytokines, and chemokines in HDFs with suppressed collagenase and elastase activity. Present observations help to understand the factors that affect HDFs in the microenvironment of FD exposed keratinocytes and the therapeutic role of HTT as a suppressor of skin aging. Further studies using organotypic skin culture models could broaden the understanding of the effects of FD and the therapeutic role of HTT.
Phenolic Compounds of Reynoutria sp. as Modulators of Oral Cavity Lactoperoxidase System
Authors: Magacz Marcin , Oszajca Maria , Nawrot-Hadzik Izabela , Drożdż Ryszard , Jurczak Anna , Hadzik Jakub , Smakosz Aleksander , Krzyściak Wirginia
Published: April 2021

Lactoperoxidase (LPO) together with its (pseudo)halogenation cycle substrates, H2O2 and thiocyanate ions oxidized to hypothiocyanite ions, form one of the main systems involved in antimicrobial defense within the oral cavity. In bacterial diseases such as dental caries, lactoperoxidase is oxidized to a form known as Compound II, which is characterized by its inability to oxidize SCN–, resulting in a decreased generation of antimicrobial products. Reynoutria sp. rizome extracts, due to their high polyphenol content, have been tested as a source of compounds able to regenerate the antimicrobial activity of lactoperoxidase through converting the Compound II to the native LPO state. In the presented study, acetone extracts of R. japonica, R. sachalinensis, and R. x bohemica, together with their five fractions and four selected polyphenols dominating in the studied in extracts, were tested toward lactoperoxidase reactivating potential. For this purpose, IC50, EC50, and activation percentage were determined by Ellman’s method. Furthermore, the rate constants for the conversion of Compound I–Compound II and Compound II–native-LPO in the presence of extracts, extracts fractions, and selected polyphenols were determined. Finally, the ability to enhance the antimicrobial properties of the lactoperoxidase system was tested against Streptococcus mutans. We proved that Reynoutria sp. rhizome is the source of lactoperoxidase peroxidation cycle substrates, which can act as activators and inhibitors of the antimicrobial properties of that system. The presented study shows that the reactivation of lactoperoxidase could become a potential therapeutic target in prevention and treatment support in some infectious oral diseases.
Assessment of Characteristics of Acid Mine Drainage Treated with Fly Ash
Authors: Shirin Saba , Jamal Aarif , Emmanouil Christina , Yadav Akhilesh Kumar
Published: April 2021

Acid mine drainage (AMD) occurs naturally in abandoned coal mines, and it contains hazardous toxic elements in varying concentrations. In the present research, AMD samples collected from an abandoned mine were treated with fly ash samples from four thermal power plants in Singrauli Coalfield in the proximate area, at optimized concentrations. The AMD samples were analyzed for physicochemical parameters and metal content before and after fly ash treatment. Morphological, geochemical and mineralogical characterization of the fly ash was performed using SEM, XRF and XRD. This laboratory-scale investigation indicated that fly ash had appreciable neutralization potential, increasing AMD pH and decreasing elemental and sulfate concentrations. Therefore, fly ash may be effectively used for AMD neutralization, and its suitability for the management of coalfield AMD pits should be assessed further.