bluuebunny/crossref_metadata_2025 huggingface dataset:
Supplementary Figure 2 from Epithelial Cell Organization Suppresses Myc Function by Attenuating Myc Expression
Authors: Simpson David R. , Yu Min , Zheng Siyuan , Zhao Zhongming , Muthuswamy Senthil K. , Tansey William P.
Published: March 2023

Supplementary Figure 2 from Epithelial Cell Organization Suppresses Myc Function by Attenuating Myc Expression
Supplementary Figure 3 from Interactions of Abiraterone, Eplerenone, and Prednisolone with Wild-type and Mutant Androgen Receptor: A Rationale for Increasing Abiraterone Exposure or Combining with MDV3100
Authors: Richards Juliet , Lim Ai Chiin , Hay Colin W. , Taylor Angela E. , Wingate Anna , Nowakowska Karolina , Pezaro Carmel , Carreira Suzanne , Goodall Jane , Arlt Wiebke , McEwan Iain J. , de Bono Johann S. , Attard Gerhardt
Published: March 2023

PDF file - 265K
Supplementary Figure 1 from Interactions of Abiraterone, Eplerenone, and Prednisolone with Wild-type and Mutant Androgen Receptor: A Rationale for Increasing Abiraterone Exposure or Combining with MDV3100
Authors: Richards Juliet , Lim Ai Chiin , Hay Colin W. , Taylor Angela E. , Wingate Anna , Nowakowska Karolina , Pezaro Carmel , Carreira Suzanne , Goodall Jane , Arlt Wiebke , McEwan Iain J. , de Bono Johann S. , Attard Gerhardt
Published: March 2023

PDF file - 66K
Supplementary Figure 9 from Glutamine Deprivation Enhances Antitumor Activity of 3-Bromopyruvate through the Stabilization of Monocarboxylate Transporter-1
Authors: Cardaci Simone , Rizza Salvatore , Filomeni Giuseppe , Bernardini Roberta , Bertocchi Fabio , Mattei Maurizio , Paci Maurizio , Rotilio Giuseppe , Ciriolo Maria Rosa
Published: March 2023

PDF file - 104K, Scheme of 3-BrPA chemo-potentiation induced by glutamine deprivation
Supplementary Figure 7 from Glutamine Deprivation Enhances Antitumor Activity of 3-Bromopyruvate through the Stabilization of Monocarboxylate Transporter-1
Authors: Cardaci Simone , Rizza Salvatore , Filomeni Giuseppe , Bernardini Roberta , Bertocchi Fabio , Mattei Maurizio , Paci Maurizio , Rotilio Giuseppe , Ciriolo Maria Rosa
Published: March 2023

PDF file - 180K, MCT-1 up-regulation induced by glutamine deprivation is responsible for 3-BrPA chemo-potentiation
Supplementary Figure 5 from Glutamine Deprivation Enhances Antitumor Activity of 3-Bromopyruvate through the Stabilization of Monocarboxylate Transporter-1
Authors: Cardaci Simone , Rizza Salvatore , Filomeni Giuseppe , Bernardini Roberta , Bertocchi Fabio , Mattei Maurizio , Paci Maurizio , Rotilio Giuseppe , Ciriolo Maria Rosa
Published: March 2023

PDF file - 98K, Complex II inhibition is responsible for 3-BrPA-induced metabolic-oxidative stress upon glutamine deprivation
Supplementary Figure 3 from Glutamine Deprivation Enhances Antitumor Activity of 3-Bromopyruvate through the Stabilization of Monocarboxylate Transporter-1
Authors: Cardaci Simone , Rizza Salvatore , Filomeni Giuseppe , Bernardini Roberta , Bertocchi Fabio , Mattei Maurizio , Paci Maurizio , Rotilio Giuseppe , Ciriolo Maria Rosa
Published: March 2023

PDF file - 154K, Glutamine deprivation-induced 3-BrPA chemo-potentiation does not depend on synergistic impairment of glutaminolysis and glycolysis
Supplementary Table 2 from Colorectal Cancer Risk Associated with Hormone Use Varies by Expression of Estrogen Receptor-β
Authors: Rudolph Anja , Toth Csaba , Hoffmeister Michael , Roth Wilfried , Herpel Esther , Schirmacher Peter , Brenner Hermann , Chang-Claude Jenny
Published: March 2023

PDF file - 83K, Associations between colorectal cancer risk and use of oral contraceptives as well as use of menopausal hormone therapy according to colorectal cancer stage.
Supplementary Figure 5B from B-Raf Activation Cooperates with PTEN Loss to Drive c-Myc Expression in Advanced Prostate Cancer
Authors: Wang Jingqiang , Kobayashi Takashi , Floc'h Nicolas , Kinkade Carolyn Waugh , Aytes Alvaro , Dankort David , Lefebvre Celine , Mitrofanova Antonina , Cardiff Robert D. , McMahon Martin , Califano Andrea , Shen Michael M. , Abate-Shen Cory
Published: March 2023

PDF file - 36K, Pathway enrichment analysis for differentially expressed genes between Nkx3.1CE2/+; Ptenf/f; BrafCA/+ and Nkx3.1CE2/+; Ptenf/f mouse prostate tumors
Supplementary Figures 1-10 from CXCR2 Expression in Tumor Cells Is a Poor Prognostic Factor and Promotes Invasion and Metastasis in Lung Adenocarcinoma
Authors: Saintigny Pierre , Massarelli Erminia , Lin Steven , Ahn Young-Ho , Chen Yulong , Goswami Sangeeta , Erez Baruch , O'Reilly Michael S. , Liu Diane , Lee J. Jack , Zhang Li , Ping Yuan , Behrens Carmen , Solis Soto Luisa M. , Heymach John V. , Kim Edward S. , Herbst Roy S. , Lippman Scott M. , Wistuba Ignacio I. , Hong Waun Ki , Kurie Jonathan M. , Koo Ja Seok
Published: March 2023

PDF file - 581K, Supplementary Figure 1: Distribution of cytoplasmic CXCR2 protein expression in 262 non-small cell lung cancer cell lines. Supplementary Figure 2: CXCR2 expression in tumor cells according to EGFR and KRAS mutation status. Supplementary Figure 3: Kaplan-Meier curves Supplementary Figure 4: Distribution of expression of CXCR2 and its ligand genes Supplementary Figure 5: CXCR2/CXCR2 ligands cluster is associated with a worse overall survival in patients with lung adenocarcinoma (N=442) Supplementary Figure 6: TTF-1 gene expression was more frequently lower in lung adenocarcinomas Supplementary Figure 7: The first two principal components were computed using expression of CXCR2 and its ligand genes Supplementary Figure 8: The first two principal components were computed using expression of CXCR2 and its ligand genes Supplementary Figure 9: Expression of (A) CXCL1, (B) CXCL2, (C) CXCL3, and (D) CXCL6 genes was negatively correlated with the level of their promoter methylation as indicated by average beta-value. Supplementary Figure 10: The effect of two doses of decitabine
Supplementary Figure 3 from NF-κB Activity Regulates Mesenchymal Stem Cell Accumulation at Tumor Sites
Authors: Uchibori Ryosuke , Tsukahara Tomonori , Mizuguchi Hiroyuki , Saga Yasushi , Urabe Masashi , Mizukami Hiroaki , Kume Akihiro , Ozawa Keiya
Published: March 2023

PDF file - 235K, Tumor homing ability of MSCs in vivo
Supplementary Figures 1-4 from Inhibition of c-Met Reduces Lymphatic Metastasis in RIP-Tag2 Transgenic Mice
Authors: Sennino Barbara , Ishiguro-Oonuma Toshina , Schriver Brian J. , Christensen James G. , McDonald Donald M.
Published: March 2023

PDF - 796K, Supplementary Figure 1. VEGFR-2 immunoreactivity and expression of VEGF-A, VEGF-C, and VEGF-D. Supplementary Figure 2. Distribution of c-Met immunoreactivity in tumors of RIP-Tag2 mice treated from age 14 to 17 weeks. Supplementary Figure 3. Treatment-related differences in c-Met and phospho-c-Met immunoreactivities in RIP-Tag2 tumors and lymphatics. Supplementary Figure 4. HGF immunoreactivity in RIP-Tag2 tumors and lymph nodes after treatment from age 14 to 17 weeks.
Supplementary Tables 4-8 from Genetic Polymorphisms and Protein Expression of NRF2 and Sulfiredoxin Predict Survival Outcomes in Breast Cancer
Authors: Hartikainen Jaana M. , Tengström Maria , Kosma Veli-Matti , Kinnula Vuokko L. , Mannermaa Arto , Soini Ylermi
Published: March 2023

PDF file - 96K, Breast cancer survival according to NRF2 and SRXN1 genotypes and NRF2 protein expression
Supplementary Figure Legend from Enhanced Effector Responses in Activated CD8+ T Cells Deficient in Diacylglycerol Kinases
Authors: Riese Matthew J. , Wang Liang-Chuan S. , Moon Edmund K. , Joshi Rohan P. , Ranganathan Anjana , June Carl H. , Koretzky Gary A. , Albelda Steven M.
Published: March 2023

PDF file - 77K
Supplementary Table 1 from Genetic Polymorphisms and Protein Expression of NRF2 and Sulfiredoxin Predict Survival Outcomes in Breast Cancer
Authors: Hartikainen Jaana M. , Tengström Maria , Kosma Veli-Matti , Kinnula Vuokko L. , Mannermaa Arto , Soini Ylermi
Published: March 2023

PDF file - 43K, Clinicopathological characteristics of the patients
Supplementary Figure 1 from Enhanced Effector Responses in Activated CD8+ T Cells Deficient in Diacylglycerol Kinases
Authors: Riese Matthew J. , Wang Liang-Chuan S. , Moon Edmund K. , Joshi Rohan P. , Ranganathan Anjana , June Carl H. , Koretzky Gary A. , Albelda Steven M.
Published: March 2023

PDF file - 52K, MesoCAR-transduced dgkzeta-deficient T cells demonstrate resistance to multiple inhibitory stimuli
Supplementary Figure Legends 1-2 from Proteomic Portrait of Human Breast Cancer Progression Identifies Novel Prognostic Markers
Authors: Geiger Tamar , Madden Stephen F. , Gallagher William M. , Cox Juergen , Mann Matthias
Published: March 2023

PDF file - 38K
Supplementary Figures 9 and 10 from Neuropilin-1–Dependent Regulation of EGF-Receptor Signaling
Authors: Rizzolio Sabrina , Rabinowicz Noa , Rainero Elena , Lanzetti Letizia , Serini Guido , Norman Jim , Neufeld Gera , Tamagnone Luca
Published: March 2023

PDF file, 298K, Suppl. Fig. 9. EGF- and TGF�-induced EGFR internalization is dependent on Nrp1. Suppl. Fig. 10. Transferrin receptor endocytosis is not dependent on Nrp1.
Supplementary Figures 5 and 6 from Neuropilin-1–Dependent Regulation of EGF-Receptor Signaling
Authors: Rizzolio Sabrina , Rabinowicz Noa , Rainero Elena , Lanzetti Letizia , Serini Guido , Norman Jim , Neufeld Gera , Tamagnone Luca
Published: March 2023

PDF file, 271K, Suppl. Fig. 5. Nrp1 overexpression induces EGFR phosphorylation in experimental tumors. Suppl. Fig. 6. Nrp1 co-localizes with EGFR on the cell surface and undergoes endocytosis in response to EGF.
Supplementary Figure 4 from Vascular Normalization by Loss of Siah2 Results in Increased Chemotherapeutic Efficacy
Authors: Wong Christina S.F. , Sceneay Jaclyn , House Colin M. , Halse Heloise M. , Liu Mira C.P. , George Joshy , Hunnam Titaina C.U. Potdevin , Parker Belinda S. , Haviv Izhak , Ronai Ze'ev , Cullinane Carleen , Bowtell David D. , Möller Andreas
Published: March 2023

PDF file - 53K
Supplementary Table 2 from Human TH17 Immune Cells Specific for the Tumor Antigen MAGE-A3 Convert to IFN-γ–Secreting Cells as They Differentiate into Effector T Cells In Vivo
Authors: Hamaï Ahmed , Pignon Pascale , Raimbaud Isabelle , Duperrier-Amouriaux Karine , Senellart Hélène , Hiret Sandrine , Douillard Jean-Yves , Bennouna Jaafar , Ayyoub Maha , Valmori Danila
Published: March 2023

PDF file - 49K
Supplementary Table 7 from EZH2-Mediated Concordant Repression of Wnt Antagonists Promotes β-Catenin–Dependent Hepatocarcinogenesis
Authors: Cheng Alfred S.L. , Lau Suki S. , Chen Yangchao , Kondo Yutaka , Li May S. , Feng Hai , Ching Arthur K. , Cheung Kin F. , Wong Hoi K. , Tong Joanna H. , Jin Hongchuan , Choy Kwong W. , Yu Jun , To Ka F. , Wong Nathalie , Huang Tim H.-M. , Sung Joseph J.Y.
Published: March 2023

Supplementary Table 7 from EZH2-Mediated Concordant Repression of Wnt Antagonists Promotes β-Catenin–Dependent Hepatocarcinogenesis
Supplementary Table 4 from Hedgehog Signaling Blockade Delays Hepatocarcinogenesis Induced by Hepatitis B Virus X Protein
Authors: Arzumanyan Alla , Sambandam Vaishnavi , Clayton Marcia M. , Choi Steve S. , Xie Guanhua , Diehl Anna Mae , Yu Dae-Yeul , Feitelson Mark A.
Published: March 2023

PDF file - 72K, HBx and Hh components in the liver of HBxTg
Supplementary Table 2 from Cancer Stem Cell Vaccination Confers Significant Antitumor Immunity
Authors: Ning Ning , Pan Qin , Zheng Fang , Teitz-Tennenbaum Seagal , Egenti Martin , Yet Ji , Li Mu , Ginestier Christophe , Wicha Max S. , Moyer Jeffrey S. , Prince Mark E.P. , Xu Yingxin , Zhang Xiao-Lian , Huang Shiang , Chang Alfred E. , Li Qiao
Published: March 2023

PDF file - 57K
Supplementary Figure 3 from Hedgehog Signaling Blockade Delays Hepatocarcinogenesis Induced by Hepatitis B Virus X Protein
Authors: Arzumanyan Alla , Sambandam Vaishnavi , Clayton Marcia M. , Choi Steve S. , Xie Guanhua , Diehl Anna Mae , Yu Dae-Yeul , Feitelson Mark A.
Published: March 2023

PDF file - 3.6MB
Supplementary Figure 3 from Multiple Roles of p53-Related Pathways in Somatic Cell Reprogramming and Stem Cell Differentiation
Authors: Yi Lan , Lu Chiwei , Hu Wenwei , Sun Yvonne , Levine Arnold J.
Published: March 2023

PDF file - 88K, Different from P53, P63 and P73 were not directly involved in iPSC generation.
Supplementary Figure 2 from Multiple Roles of p53-Related Pathways in Somatic Cell Reprogramming and Stem Cell Differentiation
Authors: Yi Lan , Lu Chiwei , Hu Wenwei , Sun Yvonne , Levine Arnold J.
Published: March 2023

PDF file - 415K, Normal stem cells can be cultured under temperatures ranged from 32C to 39C and normal iPSC can be formed from MEF cells under these temperatures.
Supplementary Figure 1 from Metabolic Associations of Reduced Proliferation and Oxidative Stress in Advanced Breast Cancer
Authors: Jerby Livnat , Wolf Lior , Denkert Carsten , Stein Gideon Y. , Hilvo Mika , Oresic Matej , Geiger Tamar , Ruppin Eytan
Published: March 2023

PDF file, 557K, Robustness analysis. The Spearman correlation between the MPA profiles obtained with varying � (a-b), and � (c-d) parameters. The correlations were computed per sample (a, c), and per metabolic process (b, d).
Supplementary Figure 7 from Sef Downregulation by Ras Causes MEK1/2 to Become Aberrantly Nuclear Localized Leading to Polyploidy and Neoplastic Transformation
Authors: Duhamel Stéphanie , Hébert Josée , Gaboury Louis , Bouchard Amélie , Simon Ronald , Sauter Guido , Basik Mark , Meloche Sylvain
Published: March 2023

PDF file - 15.8MB
Supplementary Tables 1-4 from Dissection of T-cell Antigen Specificity in Human Melanoma
Authors: Andersen Rikke Sick , Thrue Charlotte Albæk , Junker Niels , Lyngaa Rikke , Donia Marco , Ellebæk Eva , Svane Inge Marie , Schumacher Ton N. , thor Straten Per , Hadrup Sine Reker
Published: March 2023

PDF file - 75K
Supplementary Figure 5 from Sef Downregulation by Ras Causes MEK1/2 to Become Aberrantly Nuclear Localized Leading to Polyploidy and Neoplastic Transformation
Authors: Duhamel Stéphanie , Hébert Josée , Gaboury Louis , Bouchard Amélie , Simon Ronald , Sauter Guido , Basik Mark , Meloche Sylvain
Published: March 2023

PDF file - 5.6MB
Supplementary Figure 3 from Sef Downregulation by Ras Causes MEK1/2 to Become Aberrantly Nuclear Localized Leading to Polyploidy and Neoplastic Transformation
Authors: Duhamel Stéphanie , Hébert Josée , Gaboury Louis , Bouchard Amélie , Simon Ronald , Sauter Guido , Basik Mark , Meloche Sylvain
Published: March 2023

PDF file - 316K
Supplementary Figure 1 from Sef Downregulation by Ras Causes MEK1/2 to Become Aberrantly Nuclear Localized Leading to Polyploidy and Neoplastic Transformation
Authors: Duhamel Stéphanie , Hébert Josée , Gaboury Louis , Bouchard Amélie , Simon Ronald , Sauter Guido , Basik Mark , Meloche Sylvain
Published: March 2023

PDF file - 532K
Supplementary Table 2 from Inhibition of Histone Demethylase JMJD1A Improves Anti-Angiogenic Therapy and Reduces Tumor-Associated Macrophages
Authors: Osawa Tsuyoshi , Tsuchida Rika , Muramatsu Masashi , Shimamura Teppei , Wang Feng , Suehiro Jun-ichi , Kanki Yasuharu , Wada Youichiro , Yuasa Yasuhito , Aburatani Hiroyuki , Miyano Satoru , Minami Takashi , Kodama Tatsuhiko , Shibuya Masabumi
Published: March 2023

PDF file - 38K, List of genes up- and down-regulated in response to hypoxia and nutrient starvation double stress (DDS) in human cancer cells.
Supplementary Figure 2 from TWIST1 Is an ERK1/2 Effector That Promotes Invasion and Regulates MMP-1 Expression in Human Melanoma Cells
Authors: Weiss Michele B. , Abel Ethan V. , Mayberry Melanie M. , Basile Kevin J. , Berger Adam C. , Aplin Andrew E.
Published: March 2023

PDF file - 3308K, High TWIST1 expression allows for melanoma spheroid outgrowth
Supplementary Methods, Figure Legends, Figures 1 - 20 from Inhibition of Histone Demethylase JMJD1A Improves Anti-Angiogenic Therapy and Reduces Tumor-Associated Macrophages
Authors: Osawa Tsuyoshi , Tsuchida Rika , Muramatsu Masashi , Shimamura Teppei , Wang Feng , Suehiro Jun-ichi , Kanki Yasuharu , Wada Youichiro , Yuasa Yasuhito , Aburatani Hiroyuki , Miyano Satoru , Minami Takashi , Kodama Tatsuhiko , Shibuya Masabumi
Published: March 2023

PDF file - 1078K
Supplementary Data from ErbB3 Ablation Impairs PI3K/Akt-Dependent Mammary Tumorigenesis
Authors: Cook Rebecca S. , Garrett Joan T. , Sánchez Violeta , Stanford Jamie C. , Young Christian , Chakrabarty Anindita , Rinehart Cammie , Zhang Yixian , Wu Yaming , Greenberger Lee , Horak Ivan D. , Arteaga Carlos L.
Published: March 2023

Supplementary Figures S1-S3; Supplementary Methods.
Supplementary Materials and Methods from Enhanced Inhibition of ERK Signaling by a Novel Allosteric MEK Inhibitor, CH5126766, That Suppresses Feedback Reactivation of RAF Activity
Authors: Ishii Nobuya , Harada Naoki , Joseph Eric W. , Ohara Kazuhiro , Miura Takaaki , Sakamoto Hiroshi , Matsuda Yutaka , Tomii Yasushi , Tachibana-Kondo Yukako , Iikura Hitoshi , Aoki Toshihiro , Shimma Nobuo , Arisawa Mikio , Sowa Yoshihiro , Poulikakos Poulikos I. , Rosen Neal , Aoki Yuko , Sakai Toshiyuki
Published: March 2023

Supplementary Materials and Methods - PDF file 65K, Antibodies and kinase panel assays
Supplementary Figure S4 from Enhanced Inhibition of ERK Signaling by a Novel Allosteric MEK Inhibitor, CH5126766, That Suppresses Feedback Reactivation of RAF Activity
Authors: Ishii Nobuya , Harada Naoki , Joseph Eric W. , Ohara Kazuhiro , Miura Takaaki , Sakamoto Hiroshi , Matsuda Yutaka , Tomii Yasushi , Tachibana-Kondo Yukako , Iikura Hitoshi , Aoki Toshihiro , Shimma Nobuo , Arisawa Mikio , Sowa Yoshihiro , Poulikakos Poulikos I. , Rosen Neal , Aoki Yuko , Sakai Toshiyuki
Published: March 2023

Supplementary Figure S4 - PDF file 60K, Phosphorylation status dependence of MEK inhibitors in a biochemical MEK kinase assay
Supplementary Table 2 from A Galectin-3–Dependent Pathway Upregulates Interleukin-6 in the Microenvironment of Human Neuroblastoma
Authors: Silverman Ayaka M. , Nakata Rie , Shimada Hiroyuki , Sposto Richard , DeClerck Yves A.
Published: March 2023

PDF file - 51K
Supplementary Table 1 from A Galectin-3–Dependent Pathway Upregulates Interleukin-6 in the Microenvironment of Human Neuroblastoma
Authors: Silverman Ayaka M. , Nakata Rie , Shimada Hiroyuki , Sposto Richard , DeClerck Yves A.
Published: March 2023

PDF file - 44K
Supplementary Table 1 from The SUMO E3-ligase PIAS1 Regulates the Tumor Suppressor PML and Its Oncogenic Counterpart PML-RARA
Authors: Rabellino Andrea , Carter Brandon , Konstantinidou Georgia , Wu Shwu-Yuan , Rimessi Alessandro , Byers Lauren A. , Heymach John V. , Girard Luc , Chiang Cheng-Ming , Teruya-Feldstein Julie , Scaglioni Pier Paolo
Published: March 2023

XLS file - 11K
Supplementary Methods, Figure Legends 1-6 from The SUMO E3-ligase PIAS1 Regulates the Tumor Suppressor PML and Its Oncogenic Counterpart PML-RARA
Authors: Rabellino Andrea , Carter Brandon , Konstantinidou Georgia , Wu Shwu-Yuan , Rimessi Alessandro , Byers Lauren A. , Heymach John V. , Girard Luc , Chiang Cheng-Ming , Teruya-Feldstein Julie , Scaglioni Pier Paolo
Published: March 2023

PDF file - 113K
Supplementary Figure 4 from The SUMO E3-ligase PIAS1 Regulates the Tumor Suppressor PML and Its Oncogenic Counterpart PML-RARA
Authors: Rabellino Andrea , Carter Brandon , Konstantinidou Georgia , Wu Shwu-Yuan , Rimessi Alessandro , Byers Lauren A. , Heymach John V. , Girard Luc , Chiang Cheng-Ming , Teruya-Feldstein Julie , Scaglioni Pier Paolo
Published: March 2023

PDF file - 95K
Supplementary Figure 4 from Concomitant Targeting of Tumor Cells and Induction of T-cell Response Synergizes to Effectively Inhibit Trastuzumab-Resistant Breast Cancer
Authors: Wang Qingfei , Li Shau-Hsuan , Wang Hai , Xiao Yi , Sahin Ozgur , Brady Samuel W. , Li Ping , Ge Hailiang , Jaffee Elizabeth M. , Muller William J. , Hortobagyi Gabriel N. , Yu Dihua
Published: March 2023

PDF file - 255K, The observation of more lymphocytes/leukocytes infiltration after HER2/Neu antibody and Akt inhibitor TCN combination treatment
Supplementary Methods, Figure Legend from Ultrasound Increases Nanoparticle Delivery by Reducing Intratumoral Pressure and Increasing Transport in Epithelial and Epithelial–Mesenchymal Transition Tumors
Authors: Watson Katherine D. , Lai Chun-Yen , Qin Shengping , Kruse Dustin E. , Lin Yueh-Chen , Seo Jai Woong , Cardiff Robert D. , Mahakian Lisa M. , Beegle Julie , Ingham Elizabeth S. , Curry Fitz-Roy , Reed Rolf K. , Ferrara Katherine W.
Published: March 2023

PDF file - 137K, Detailed relationship between the PAP parameter derived through the image-guided model with the classical parameters of solute transport coefficient, clearance, and 30 minute albumin clearance (Cl30).
Supplementary Methods, Tables 1-4, Figure 1 from Obesity and Overfeeding Affecting Both Tumor and Systemic Metabolism Activates the Progesterone Receptor to Contribute to Postmenopausal Breast Cancer
Authors: Giles Erin D. , Wellberg Elizabeth A. , Astling David P. , Anderson Steven M. , Thor Ann D. , Jindal Sonali , Tan Aik-Choon , Schedin Pepper S. , MacLean Paul S.
Published: March 2023

PDF file - 219K, Supplemental Methods, including: (1)Detailed description of obesity and postmenopausal breast cancer model (2)Criteria for removal of animals from the study (3)Western blotting methods (4)Detailed methods for adipocyte cellularity Supplemental Tables: (1) Taqman primer/probe sets for qPCR (2) Antibodies for IHC (3) Characteristics of human microarray datasets used in the study (4) Morphometric, plasma, and tumor characteristics of lean and obese tumor-bearing rats at time of ovariectomy Supplementary Figure S1: Body weights of Lean and Obese rats over time
Supplementary Table 2 from miRNA-130a Targets ATG2B and DICER1 to Inhibit Autophagy and Trigger Killing of Chronic Lymphocytic Leukemia Cells
Authors: Kovaleva Valentina , Mora Rodrigo , Park Yoon Jung , Plass Christoph , Chiramel Abhilash I. , Bartenschlager Ralf , Döhner Hartmut , Stilgenbauer Stephan , Pscherer Armin , Lichter Peter , Seiffert Martina
Published: March 2023

PDF file - 102K
Supplementary Table 2 from Truncated DNMT3B Isoform DNMT3B7 Suppresses Growth, Induces Differentiation, and Alters DNA Methylation in Human Neuroblastoma
Authors: Ostler Kelly R. , Yang Qiwei , Looney Timothy J. , Zhang Li , Vasanthakumar Aparna , Tian Yufeng , Kocherginsky Masha , Raimondi Stacey L. , DeMaio Jessica G. , Salwen Helen R. , Gu Song , Chlenski Alexandre , Naranjo Arlene , Gill Amy , Peddinti Radhika , Lahn Bruce T. , Cohn Susan L. , Godley Lucy A.
Published: March 2023

PDF file, 83K, RNA-Sequencing of Vector and DNMT3B7 expressing LA1-55n cells.
Supplementary Table 1 from Truncated DNMT3B Isoform DNMT3B7 Suppresses Growth, Induces Differentiation, and Alters DNA Methylation in Human Neuroblastoma
Authors: Ostler Kelly R. , Yang Qiwei , Looney Timothy J. , Zhang Li , Vasanthakumar Aparna , Tian Yufeng , Kocherginsky Masha , Raimondi Stacey L. , DeMaio Jessica G. , Salwen Helen R. , Gu Song , Chlenski Alexandre , Naranjo Arlene , Gill Amy , Peddinti Radhika , Lahn Bruce T. , Cohn Susan L. , Godley Lucy A.
Published: March 2023

PDF file, 50K, Primer sequences used for PCR amplification as indicated.
Supplementary Figure 4 from Targeting Pioneering Factor and Hormone Receptor Cooperative Pathways to Suppress Tumor Progression
Authors: Shah Supriya , Prasad Shikha , Knudsen Karen E.
Published: March 2023

PDF file - 1.7MB
Supplementary Figure 3 from Targeting Pioneering Factor and Hormone Receptor Cooperative Pathways to Suppress Tumor Progression
Authors: Shah Supriya , Prasad Shikha , Knudsen Karen E.
Published: March 2023

PDF file - 4.3MB
Supplementary Figure 4 from Truncated DNMT3B Isoform DNMT3B7 Suppresses Growth, Induces Differentiation, and Alters DNA Methylation in Human Neuroblastoma
Authors: Ostler Kelly R. , Yang Qiwei , Looney Timothy J. , Zhang Li , Vasanthakumar Aparna , Tian Yufeng , Kocherginsky Masha , Raimondi Stacey L. , DeMaio Jessica G. , Salwen Helen R. , Gu Song , Chlenski Alexandre , Naranjo Arlene , Gill Amy , Peddinti Radhika , Lahn Bruce T. , Cohn Susan L. , Godley Lucy A.
Published: March 2023

PDF file, 77K, Analyses of SMS-KCNR cell xenografts.
Supplementary Table 3 from RKI-1447 Is a Potent Inhibitor of the Rho-Associated ROCK Kinases with Anti-Invasive and Antitumor Activities in Breast Cancer
Authors: Patel Ronil A. , Forinash Kara D. , Pireddu Roberta , Sun Ying , Sun Nan , Martin Mathew P. , Schönbrunn Ernst , Lawrence Nicholas J. , Sebti Saïd M.
Published: March 2023

PDF file, 59K, Percent mouse weight change after RKI-1447 treatment. ErbB2 mammary tumor transgenic mice were treated with RKI-1447 as described under Materials and Methods. Final percent change in weight was calculated for each mouse using the following formula; (Wf-W0)/W0*100; where W0= Initial weight (at the beginning of treatment) and Wf= Final weight (at the end of treatment).
Supplementary Figure 4 from PGC-1α Promotes the Growth of ErbB2/Neu–Induced Mammary Tumors by Regulating Nutrient Supply
Authors: Klimcakova Eva , Chénard Valérie , McGuirk Shawn , Germain David , Avizonis Daina , Muller William J. , St-Pierre Julie
Published: March 2023

PDF file - 56K
Supplementary Figure 2 from PGC-1α Promotes the Growth of ErbB2/Neu–Induced Mammary Tumors by Regulating Nutrient Supply
Authors: Klimcakova Eva , Chénard Valérie , McGuirk Shawn , Germain David , Avizonis Daina , Muller William J. , St-Pierre Julie
Published: March 2023

PDF file - 105K
Supplementary Figure 3 from A Preclinical Mouse Model of Invasive Lobular Breast Cancer Metastasis
Authors: Doornebal Chris W. , Klarenbeek Sjoerd , Braumuller Tanya M. , Klijn Christiaan N. , Ciampricotti Metamia , Hau Cheei-Sing , Hollmann Markus W. , Jonkers Jos , de Visser Karin E.
Published: March 2023

PDF file - 385K, S3. Recipient mammary tumors and distant metastases exhibit very similar genomic profiles.
Supplementary Methods, Figures 1-8, Tables 1-3 from PTP1B Is an Androgen Receptor–Regulated Phosphatase That Promotes the Progression of Prostate Cancer
Authors: Lessard Laurent , Labbé David P. , Deblois Geneviève , Bégin Louis R. , Hardy Serge , Mes-Masson Anne-Marie , Saad Fred , Trotman Lloyd C. , Giguère Vincent , Tremblay Michel L.
Published: March 2023

PDF file - 2.4MB
Supplementary Methods from Genomic Profiling of Isolated Circulating Tumor Cells from Metastatic Breast Cancer Patients
Authors: Magbanua Mark Jesus M. , Sosa Eduardo V. , Roy Ritu , Eisenbud Lauren E. , Scott Janet H. , Olshen Adam , Pinkel Dan , Rugo Hope S. , Park John W.
Published: March 2023

PDF file - 126K
Supplementary Table 1 from PD-1 Blockade Enhances T-cell Migration to Tumors by Elevating IFN-γ Inducible Chemokines
Authors: Peng Weiyi , Liu Chengwen , Xu Chunyu , Lou Yanyan , Chen Jieqing , Yang Yan , Yagita Hideo , Overwijk Willem W. , Lizée Gregory , Radvanyi Laszlo , Hwu Patrick
Published: March 2023

PDF file - 66K, List of primers of the chemokines and cytokines of interest for real-time RT-PCR
Supplementary Methods from The Melanoma‐Upregulated Long Noncoding RNA SPRY4-IT1 Modulates Apoptosis and Invasion
Authors: Khaitan Divya , Dinger Marcel E. , Mazar Joseph , Crawford Joanna , Smith Martin A. , Mattick John S. , Perera Ranjan J.
Published: March 2023

Supplementary Methods from The Melanoma‐Upregulated Long Noncoding RNA SPRY4-IT1 Modulates Apoptosis and Invasion
Supplementary Figure 1 from PD-1 Blockade Enhances T-cell Migration to Tumors by Elevating IFN-γ Inducible Chemokines
Authors: Peng Weiyi , Liu Chengwen , Xu Chunyu , Lou Yanyan , Chen Jieqing , Yang Yan , Yagita Hideo , Overwijk Willem W. , Lizée Gregory , Radvanyi Laszlo , Hwu Patrick
Published: March 2023

PDF file - 50K, The expression of PD-1 by non-transferred T cells at the tumor and spleen of mice receiving ACT treatment
Supplementary Methods from Gut Microbiota Protects against Gastrointestinal Tumorigenesis Caused by Epithelial Injury
Authors: Zhan Yu , Chen Po-Ju , Sadler William D. , Wang Fuyuan , Poe Sara , Núñez Gabriel , Eaton Kathryn A. , Chen Grace Y.
Published: March 2023

PDF file - 103K, Description of additional methods and procedures used in the study. Also includes primer sequences.
Supplementary Figure 6 from Targeting Sonic Hedgehog-Associated Medulloblastoma through Inhibition of Aurora and Polo-like Kinases
Authors: Markant Shirley L. , Esparza Lourdes Adriana , Sun Jesse , Barton Kelly L. , McCoig Lisa M. , Grant Gerald A. , Crawford John R. , Levy Michael L. , Northcott Paul A. , Shih David , Remke Marc , Taylor Michael D. , Wechsler-Reya Robert J.
Published: March 2023

PDF file - 5301K, Supplemental Figure 6: Classification of human MB xenografts.
Supplementary Materials Figures and Tables from Myoferlin Is a Key Regulator of EGFR Activity in Breast Cancer
Authors: Turtoi Andrei , Blomme Arnaud , Bellahcène Akeila , Gilles Christine , Hennequière Vincent , Peixoto Paul , Bianchi Elettra , Noel Agnès , De Pauw Edwin , Lifrange Eric , Delvenne Philippe , Castronovo Vincent
Published: March 2023

PDF file, 2894K, Figure S1: Cell migration and invasion analysis following siRNA mediated silencing of myoferlin (MYOF) in MDA-MB231 cells. Figure S2: Myoferlin depletion in MDA-MB468 cells results in sustained EGFR phosphorylation upon EGF stimulation and impedes the EGF-induced cell migration. Figure S3: Analysis of time dependent pEGFR and EGFR expression patterns (48h post transfection with irrelevant siRNA) following EGF stimulation and chemical inhibition of the proteasome with MG132. Figure S4: Cellular adhesion assay on selected extracellular matrix proteins. Figure S5: Modulation of vimentin expression following myoferlin silencing in MDA-MB231 cells. Figure S6: Clathrin (CLH1) colocalizes with myoferlin and pEGFR during EGF mediated receptor activation and shows no modulation at the protein level following myoferlin silencing. Supplemental Tables Table S1: List of up-regulated breast tumor proteins obtained from the analysis of 3 non-tumoral adjacent and 3 tumoral specimens. Table S2: Average values (n=3) indicating the number of unique peptides, sequence coverage and score. Table S3: Glycosylated peptides observed for the proteins displayed in the Table 1.
Supplementary Figure 2 from Disruption of Wild-Type IDH1 Suppresses D-2-Hydroxyglutarate Production in IDH1-Mutated Gliomas
Authors: Jin Genglin , Reitman Zachary J. , Duncan Christopher G. , Spasojevic Ivan , Gooden David M. , Rasheed B. Ahmed , Yang Rui , Lopez Giselle Y. , He Yiping , McLendon Roger E. , Bigner Darell D. , Yan Hai
Published: March 2023

PDF file-28KB, Comparison of growth and apoptosis for parental IMA cells and IMA cells with the IDH1-WT allele knocked out (KO)
Supplementary Figures 1 - 7 from Dysregulated Expression of FOXM1 Isoforms Drives Progression of Pancreatic Cancer
Authors: Kong Xiangyu , Li Lei , Li Zhaoshen , Le Xiangdong , Huang Chen , Jia Zhiliang , Cui Jiujie , Huang Suyun , Wang Liwei , Xie Keping
Published: March 2023

PDF file - 1105K, Supplementary Fig. S1. FOXM1 overexpression and its direct association with clinicopathological parameters in pancreatic cancer cases. Supplementary Fig. S2. FoxM1 isoforms and PCR primers and verifications using cDNA and tumor mRNA as templates. Supplementary Fig. S3. FOXM1b, FOXM1b1, and FOXM1b2 expression in pancreatic cancer cells. Supplementary Fig. S4. Influence of altered expression of FOXM1 isoforms on pancreatic tumor growth and metastasis. Supplementary Fig. S5. Suppression of pancreatic cancer cell migration and invasion by knockdown of FOXM1 expression. Supplementary Fig. S6. FOXM1 promoter activity in pancreatic cancer cells. Supplementary Fig. S7. FOXM1c signaling in pancreatic cancer.
Supplementary Figure 8 from An Antibody That Locks HER3 in the Inactive Conformation Inhibits Tumor Growth Driven by HER2 or Neuregulin
Authors: Garner Andrew P. , Bialucha Carl U. , Sprague Elizabeth R. , Garrett Joan T. , Sheng Qing , Li Sharon , Sineshchekova Olga , Saxena Parmita , Sutton Cammie R. , Chen Dongshu , Chen Yan , Wang Huiqin , Liang Jinsheng , Das Rita , Mosher Rebecca , Gu Jian , Huang Alan , Haubst Nicole , Zehetmeier Carolin , Haberl Manuela , Elis Winfried , Kunz Christian , Heidt Analeah B. , Herlihy Kara , Murtie Joshua , Schuller Alwin , Arteaga Carlos L. , Sellers William R. , Ettenberg Seth A.
Published: March 2023

PDF file - 181K, Figure S8. PIK3CA mutation is associated with reduced activity contributed by Trastuzumab (T) in Trastuzumab + LJM716 (L) combinations.
Supplementary Table and Figure Legends from Mesenchymal CD44 Expression Contributes to the Acquisition of an Activated Fibroblast Phenotype via TWIST Activation in the Tumor Microenvironment
Authors: Spaeth Erika L. , Labaff Adam M. , Toole Bryan P. , Klopp Ann , Andreeff Michael , Marini Frank C.
Published: March 2023

PDF file, 39K.
Supplementary Figure 1 from Epigenetic Regulation by Z-DNA Silencer Function Controls Cancer-Associated ADAM-12 Expression in Breast Cancer: Cross-talk between MeCP2 and NF1 Transcription Factor Family
Authors: Ray Bimal K. , Dhar Srijita , Henry Carolyn , Rich Alexander , Ray Alpana
Published: March 2023

PDF file - 126K, H&E staining of canine breast cancer tissues and western blot analysis of ADAM-12 in canine tissues
Supplementary Tables from Src Family Kinases as Novel Therapeutic Targets to Treat Breast Cancer Brain Metastases
Authors: Zhang Siyuan , Huang Wen-Chien , Zhang Lin , Zhang Chenyu , Lowery Frank J. , Ding Zhaoxi , Guo Hua , Wang Hai , Huang Suyun , Sahin Aysegul A. , Aldape Kenneth D. , Steeg Patricia S. , Yu Dihua
Published: March 2023

PDF file, 75K, Supplementary Table 1 RPPA analysis of BT474 cells; Supplementary Table 2 IHC analysis of unmatched patient tumors stratified by HER2 status.
Supplementary Figure 5 from GM-CSF Promotes the Immunosuppressive Activity of Glioma-Infiltrating Myeloid Cells through Interleukin-4 Receptor-α
Authors: Kohanbash Gary , McKaveney Kayla , Sakaki Masashi , Ueda Ryo , Mintz Arlan H. , Amankulor Nduka , Fujita Mitsugu , Ohlfest John R. , Okada Hideho
Published: March 2023

PDF file, 66K, Murine glioma-derived CD11b+ cells inhibit CD8+ T-cells in vitro.
Supplementary Figure S2 from Melanoma-Educated CD14+ Cells Acquire a Myeloid-Derived Suppressor Cell Phenotype through COX-2–Dependent Mechanisms
Authors: Mao Yumeng , Poschke Isabel , Wennerberg Erik , Pico de Coaña Yago , Egyhazi Brage Suzanne , Schultz Inkeri , Hansson Johan , Masucci Giuseppe , Lundqvist Andreas , Kiessling Rolf
Published: March 2023

Supplementary Figure S2 - PDF file 53K, Tumor-educated MDSC-like cells are potent suppressors of autologous T cells
Supplemental Table S2 from Melanoma-Educated CD14+ Cells Acquire a Myeloid-Derived Suppressor Cell Phenotype through COX-2–Dependent Mechanisms
Authors: Mao Yumeng , Poschke Isabel , Wennerberg Erik , Pico de Coaña Yago , Egyhazi Brage Suzanne , Schultz Inkeri , Hansson Johan , Masucci Giuseppe , Lundqvist Andreas , Kiessling Rolf
Published: March 2023

Supplemental table containing additional antibody information.
Supplemental Figure Legends from Melanoma-Educated CD14+ Cells Acquire a Myeloid-Derived Suppressor Cell Phenotype through COX-2–Dependent Mechanisms
Authors: Mao Yumeng , Poschke Isabel , Wennerberg Erik , Pico de Coaña Yago , Egyhazi Brage Suzanne , Schultz Inkeri , Hansson Johan , Masucci Giuseppe , Lundqvist Andreas , Kiessling Rolf
Published: March 2023

Legend for Supplemental Figures S1-S4
Supplementary Figure 2 from PanIN-Specific Regulation of Wnt Signaling by HIF2α during Early Pancreatic Tumorigenesis
Authors: Criscimanna Angela , Duan Li-Juan , Rhodes Julie A. , Fendrich Volker , Wickline Emily , Hartman Douglas J. , Monga Satdarshan P.S. , Lotze Michael T. , Gittes George K. , Fong Guo-Hua , Esni Farzad
Published: March 2023

Supplementary Figure 2 - PDF file 2100K, Normal pancreas development in Ptf1Cre;Hif2�f/f mice
Supplementary Figure 4 from Proteomic and Lipidomic Signatures of Lipid Metabolism in NASH-Associated Hepatocellular Carcinoma
Authors: Muir Kyle , Hazim Antonious , He Ying , Peyressatre Marion , Kim Do-Young , Song Xiaoling , Beretta Laura
Published: March 2023

Supplementary Figure 4�- PDF file 110K, Changes in circulating fatty acids (cholesterol esters) (relative composition in %) in Pten null mice
Supplementary Figure 5 from Therapeutic Effects of Deleting Cancer-Associated Fibroblasts in Cholangiocarcinoma
Authors: Mertens Joachim C. , Fingas Christian D. , Christensen John D. , Smoot Rory L. , Bronk Steven F. , Werneburg Nathan W. , Gustafson Michael P. , Dietz Allan B. , Roberts Lewis R. , Sirica Alphonse E. , Gores Gregory J.
Published: March 2023

PDF file - 769K, Navitoclax treatment induces Bax activation and mitochondrial Smac release in cancer associated fibroblasts in-vivo
Supplementary Figure 4 from Therapeutic Effects of Deleting Cancer-Associated Fibroblasts in Cholangiocarcinoma
Authors: Mertens Joachim C. , Fingas Christian D. , Christensen John D. , Smoot Rory L. , Bronk Steven F. , Werneburg Nathan W. , Gustafson Michael P. , Dietz Allan B. , Roberts Lewis R. , Sirica Alphonse E. , Gores Gregory J.
Published: March 2023

PDF file - 45K, Rat cancer associated fibroblasts are sensitive to navitoclax induced apoptosis similar to hCAF while rat CCA cells exhibit minimal sensitivity
Supplementary Materials and Methods from Dysregulated Hematopoiesis Caused by Mammary Cancer Is Associated with Epigenetic Changes and Hox Gene Expression in Hematopoietic Cells
Authors: Sio Alexander , Chehal Manreet K. , Tsai Kevin , Fan Xueling , Roberts Morgan E. , Nelson Brad H. , Grembecka Jolanta , Cierpicki Tomasz , Krebs Danielle L. , Harder Kenneth W.
Published: March 2023

PDF file, 96K.
Supplementary Methods from Double Minute Chromosomes in Glioblastoma Multiforme Are Revealed by Precise Reconstruction of Oncogenic Amplicons
Authors: Sanborn J. Zachary , Salama Sofie R. , Grifford Mia , Brennan Cameron W. , Mikkelsen Tom , Jhanwar Suresh , Katzman Sol , Chin Lynda , Haussler David
Published: March 2023

PDF file, 260K.
Supplementary Figure 3 from Nkx2-8 Downregulation Promotes Angiogenesis and Activates NF-κB in Esophageal Cancer
Authors: Lin Chuyong , Song Libing , Gong Hui , Liu Aibin , Lin Xi , Wu Jueheng , Li Mengfeng , Li Jun
Published: March 2023

PDF file - 49K, Downregulation of Nkx2-8 promotes NF-κB activity.
Supplementary Table 4 from A Comparative Genomic Approach for Identifying Synthetic Lethal Interactions in Human Cancer
Authors: Deshpande Raamesh , Asiedu Michael K. , Klebig Mitchell , Sutor Shari , Kuzmin Elena , Nelson Justin , Piotrowski Jeff , Ho Shin Seung , Yoshida Minoru , Costanzo Michael , Boone Charles , Wigle Dennis A. , Myers Chad L.
Published: March 2023

XLS file, 326K, This table contains filtered set of interactions between conserved genes that satisfy the following prioritization criteria: (i) epsilon < -0.2 or epsilon < -0.08 for both AB-BA interaction in cases where both have been screened. (see Methods - Processing yeast genetic interaction data) (ii) Only 1-1 orthologs are considered. The information is arranged the same order as Supplementary Table S3.
Supplementary Table 2 from A Comparative Genomic Approach for Identifying Synthetic Lethal Interactions in Human Cancer
Authors: Deshpande Raamesh , Asiedu Michael K. , Klebig Mitchell , Sutor Shari , Kuzmin Elena , Nelson Justin , Piotrowski Jeff , Ho Shin Seung , Yoshida Minoru , Costanzo Michael , Boone Charles , Wigle Dennis A. , Myers Chad L.
Published: March 2023

XLS file, 55K, This table contains significant genetic interactions for rpt1-1, a temperature sensitive allele of RPT1.
Supplementary Table 1 from A Comparative Genomic Approach for Identifying Synthetic Lethal Interactions in Human Cancer
Authors: Deshpande Raamesh , Asiedu Michael K. , Klebig Mitchell , Sutor Shari , Kuzmin Elena , Nelson Justin , Piotrowski Jeff , Ho Shin Seung , Yoshida Minoru , Costanzo Michael , Boone Charles , Wigle Dennis A. , Myers Chad L.
Published: March 2023

XLS file, 258K, The orthology between yeast and human genes from InParanoid7 (Ostlund et al. 2010) has been listed in this table.
Supplementary Tables 1 - 4 from miR145 Targets the SOX9/ADAM17 Axis to Inhibit Tumor-Initiating Cells and IL-6–Mediated Paracrine Effects in Head and Neck Cancer
Authors: Yu Cheng-Chia , Tsai Lo-Lin , Wang Mong-Lien , Yu Chuan-Hang , Lo Wen-Liang , Chang Yun-Ching , Chiou Guang-Yuh , Chou Ming-Yung , Chiou Shih-Hwa
Published: March 2023

PDF file - 107K, Suppl. Table 1. The sequences of the primers for quantitative RT-PCR Suppl. Table 2. Primers for plasmid construction and target sequence of lentiviral-based Sh-RNA Suppl. Table 3. List of proteins tested by antibodies Suppl. Table 4. Clinicopathological parameters of the precancers and HNSCC patients
Supplementary Figure 2 from Evidence for a Role of the PD-1:PD-L1 Pathway in Immune Resistance of HPV-Associated Head and Neck Squamous Cell Carcinoma
Authors: Lyford-Pike Sofia , Peng Shiwen , Young Geoffrey D. , Taube Janis M. , Westra William H. , Akpeng Belinda , Bruno Tullia C. , Richmon Jeremy D. , Wang Hao , Bishop Justin A. , Chen Lieping , Drake Charles G. , Topalian Suzanne L. , Pardoll Drew M. , Pai Sara I.
Published: March 2023

PDF file - 28K, PD-1 expressing CD8+ T cells in non-cancerous tonsil tissue are able to produce IFN-g after stimulation
Supplementary Figure 1 from Evidence for a Role of the PD-1:PD-L1 Pathway in Immune Resistance of HPV-Associated Head and Neck Squamous Cell Carcinoma
Authors: Lyford-Pike Sofia , Peng Shiwen , Young Geoffrey D. , Taube Janis M. , Westra William H. , Akpeng Belinda , Bruno Tullia C. , Richmon Jeremy D. , Wang Hao , Bishop Justin A. , Chen Lieping , Drake Charles G. , Topalian Suzanne L. , Pardoll Drew M. , Pai Sara I.
Published: March 2023

PDF file - 36K, Detection of PTEN by western blot and PD-L1 expression by flow cytometry in HPV(-) head and neck cancer lines
Supplementary Figure 3 from miR145 Targets the SOX9/ADAM17 Axis to Inhibit Tumor-Initiating Cells and IL-6–Mediated Paracrine Effects in Head and Neck Cancer
Authors: Yu Cheng-Chia , Tsai Lo-Lin , Wang Mong-Lien , Yu Chuan-Hang , Lo Wen-Liang , Chang Yun-Ching , Chiou Guang-Yuh , Chou Ming-Yung , Chiou Shih-Hwa
Published: March 2023

PDF file - 112K, Suppl. Fig. 3. The miR145/ADAM17/IL-6 pathway modulates TICs properties
Supplementary Table 2 from Enhanced Radiation Sensitivity in HPV-Positive Head and Neck Cancer
Authors: Kimple Randall J. , Smith Molly A. , Blitzer Grace C. , Torres Alexandra D. , Martin Joshua A. , Yang Robert Z. , Peet Chimera R. , Lorenz Laurel D. , Nickel Kwangok P. , Klingelhutz Aloysius J. , Lambert Paul F. , Harari Paul M.
Published: March 2023

XLSX - 46K, Table of Primer sequences used and probes.
Supplementary Figure 4 from Hsp27 Regulates Epithelial Mesenchymal Transition, Metastasis, and Circulating Tumor Cells in Prostate Cancer
Authors: Shiota Masaki , Bishop Jennifer L. , Nip Ka Mun , Zardan Anousheh , Takeuchi Ario , Cordonnier Thomas , Beraldi Eliana , Bazov Jenny , Fazli Ladan , Chi Kim , Gleave Martin , Zoubeidi Amina
Published: March 2023

PDF file - 425K, Hsp27 knockdown decreases cell migration in PC-3M cells.
Supplementary Figure 9 from Survivin-3B Potentiates Immune Escape in Cancer but Also Inhibits the Toxicity of Cancer Chemotherapy
Authors: Végran Frédérique , Mary Romain , Gibeaud Anne , Mirjolet Céline , Collin Bertrand , Oudot Alexandra , Charon-Barra Céline , Arnould Laurent , Lizard-Nacol Sarab , Boidot Romain
Published: March 2023

PDF file, 117K, Representative western blots corresponding to Figure 5e.
Supplementary Figures 1-7 from TR3 Modulates Platinum Resistance in Ovarian Cancer
Authors: Wilson Andrew J. , Liu Annie Y. , Roland Joseph , Adebayo Oluwafunmilayo B. , Fletcher Sarah A. , Slaughter James C. , Saskowski Jeanette , Crispens Marta A. , Jones Howard W. , James Samuel , Fadare Oluwole , Khabele Dineo
Published: March 2023

PDF - 404K, Supplementary Figure 1. TR3 expression in normal and neoplastic ovarian epithelium. Supplementary Figure 2. TR3 expression in ovarian cancer epithelial sub-types. Supplementary Figure 3. Association of TR3 expression with clinical data in publically available databases. Supplementary Figure 4. Effects of cisplatin in normal human ovarian surface epithelial cells (HOSE). Supplementary Figure 5. Effects of cisplatin in A2780 PAR and CP20 ovarian cancer cells. Supplementary Figure 6. Effect of cisplatin on cell growth and cytotoxicity in OVCAR8 ShScr and ShTR3 cells. Supplementary Figure 7. Linkage of JNK and Akt regulation of TR3 subcellular localization to apoptotic effects of cisplatin.
Supplementary Figure 2 from Trastuzumab-Resistant Cells Rely on a HER2-PI3K-FoxO-Survivin Axis and Are Sensitive to PI3K Inhibitors
Authors: Chakrabarty Anindita , Bhola Neil E. , Sutton Cammie , Ghosh Ritwik , Kuba María Gabriela , Dave Bhuvanesh , Chang Jenny C. , Arteaga Carlos L.
Published: March 2023

PDF file - 432K, Reduction in expression of angiogenic factors by XL147 + trastuzumab combination
Supplementary Figure 5 from Notch1-Induced Brain Tumor Models the Sonic Hedgehog Subgroup of Human Medulloblastoma
Authors: Natarajan Sivaraman , Li Yaochen , Miller Emily E. , Shih David J. , Taylor Michael D. , Stearns Timothy M. , Bronson Roderick T. , Ackerman Susan L. , Yoon Jeong K. , Yun Kyuson
Published: March 2023

PDF file - 199K, Supplementary Figure 5. Increased apoptosis and reduced proliferation of neural precursor cells in ACTB-N1ICD brains.
Supplementary Figure 4 from Notch1-Induced Brain Tumor Models the Sonic Hedgehog Subgroup of Human Medulloblastoma
Authors: Natarajan Sivaraman , Li Yaochen , Miller Emily E. , Shih David J. , Taylor Michael D. , Stearns Timothy M. , Bronson Roderick T. , Ackerman Susan L. , Yoon Jeong K. , Yun Kyuson
Published: March 2023

PDF file - 84K, Supplementary Figure 4. N1ICD induced medulloblastomas.
Supplementary Table 1 from Epigenetic States of Cells of Origin and Tumor Evolution Drive Tumor-Initiating Cell Phenotype and Tumor Heterogeneity
Authors: Chow Kin-Hoe , Shin Dong-Mi , Jenkins Molly H. , Miller Emily E. , Shih David J. , Choi Seungbum , Low Benjamin E. , Philip Vivek , Rybinski Brad , Bronson Roderick T. , Taylor Michael D. , Yun Kyuson
Published: March 2023

Genes that are differentially expressed among the subtypes.
Supplementary Figure 5 from Inhibition of miR-17 and miR-20a by Oridonin Triggers Apoptosis and Reverses Chemoresistance by Derepressing BIM-S
Authors: Weng Hengyou , Huang Huilin , Dong Bowen , Zhao Panpan , Zhou Hui , Qu Lianghu
Published: March 2023

PDF file - 39KB, miR-17 directly targets the 3'UTR of BIM-S.
Supplemental Figure S2 from Pharmacological Ascorbate Radiosensitizes Pancreatic Cancer
Authors: Du Juan , Cieslak John A. , Welsh Jessemae L. , Sibenaller Zita A. , Allen Bryan G. , Wagner Brett A. , Kalen Amanda L. , Doskey Claire M. , Strother Robert K. , Button Anna M. , Mott Sarah L. , Smith Brian , Tsai Susan , Mezhir James , Goswami Prabhat C. , Spitz Douglas R. , Buettner Garry R. , Cullen Joseph J.
Published: March 2023

Supplemental Figure S2. IR + ascorbate induces G0/G1 cell cycle arrest. Sub-G1 population in MIA PaCa-2 cells treated with 2 Gy IR {plus minus} 2 mM ascorbate.
Supplementary Data from CrosstalkNet: A Visualization Tool for Differential Co-expression Networks and Communities
Authors: Manem Venkata , Adam George Alexandru , Gruosso Tina , Gigoux Mathieu , Bertos Nicholas , Park Morag , Haibe-Kains Benjamin
Published: March 2023

The supplementary file discusses the limitations of existing tools, performance of CrosstalkNet, along with more biological case studies.