bluuebunny/crossref_metadata_2025 huggingface dataset:
216 Using GPS collars and vaginal temperature sensors for characterizing rangeland usage and climatic stress in sheep
Authors: Bergeron John H , Huber Scott , Shane Tracy , Brito Luiz F , Washington-Allen Robert , Hess Andrew
Published: September 2024

Increased climatic variability represents the most significant threat to arid rangeland production systems. We set out to describe land use behavior of rangeland sheep and associations between land use phenotypes and body weight (BW) gain via the investigation of GPS data paired with vaginal temperature sensors to characterize fitness under climatic stress. During a fortnight spanning Aug 19th to Sep 1st, 2023, we deployed 200 vaginal temperature sensors and 199 GPS collars on extensively managed Australian Merinos, and a ⅝ Merino X ⅜ Rambouillet composite line in central Nevada, totaling 200 sampled individuals. Vaginal temperature sensors were constructed by affixing Thermochron iButtons to small ruminant CIDRs depleted of progesterone. GPS collars were constructed by enclosing i-gotU GT-120B GPS units in rubber shrink tubing around large dog collars. The iButtons sampled for vaginal temperature every 10 min, and the GPS collars sampled for location every 5 min. Body weights were recorded at the beginning and end of the trial. Remotely sensed data were acquired from the USGS and climateengine.org to analyze covariates such as slope and elevation, and NDVI, and climate, respectively, and were combined with observational data to generate rasters of distance from water and shade. GPS Position was continuously modeled using the R package momentuHMM (function crwWrap) to allow for the union of simultaneous temperature and location observations. A hidden markov model was employed (function fitHMM) to delineate between active and resting observations. Estimates were more significant when modeling land use and temperature phenotypes by just “active” observations. We used a forward progressing model building function with the R package leaps (function regsubsets) to associate weight change with all land use and temperature phenotypes. Logged distance to shade (P = 0.023) and vertical distance traveled (P = 0.057) were associated with BW gain. The square root of the range in vaginal temperature was positively associated with BW gain (P = 0.045) in a simple linear regression model, suggesting that the ability to adapt to heat stress via metabolic elasticity increases fitness. This study also estimated repeatability for land use behavior and temperature traits. The repeatabilities for vertical distance traveled and distance to shade were 0.20 ± 0.03 and 0.04 ± 0.01, respectively. The repeatabilities for mean temperature and vaginal temperature range were 0.47 ± 0.03 and 0.26 ± 0.03, respectively. In conclusion, some land use traits are lowly to moderately repeatable and have significant relationships to BW gain (i.e., fitness) in rangeland settings. Temperature traits are moderately to highly repeatable and can be associated with BW gain.
217 Effect of within-litter competition on lamb survivability
Authors: Wilson Carrie S , Taylor J Bret B , Cherry Natalie
Published: September 2024

The objective of this study was to evaluate the influence of lamb and littermate competition on lamb survivability to weaning. Litter sex composition and litter birth weight variation were the primary considerations for influencing competition. Records from maternal dual-purpose (Polypay, Rambouillet, and Targhee) and terminal breeds [Suffolk and Paternal Composite (PC; 3/8 Columbia, 3/8 Suffolk, 1/4 Texel)] were used, with 18,654 single and 56,324 twin records from all breeds and 11,082 triplet records from the 3 maternal breeds. Records were reported from 1980 to 2023, except for the PC, which began inter se mating in 2009. Lamb survivability to 90 d was analyzed using a Bayesian logistic regression model with the logit link function. Lamb survivability was assumed binomially distributed and influenced by age of dam, birth year, lamb sex, and sex of littermates as fixed effects. The relationship among littermates was also accounted for. Least squares means were transformed from the log odds scale to the probability scale. Birth weight was assumed normally distributed and influenced by the same fixed effects as lamb survival and was analyzed using a linear mixed model. Lamb survivability was also analyzed using the same model described above but including mean litter weight and individual birth weight deviation as linear covariates. Accounting for mean litter birth weight and individual birth weight deviation removed the birth weight differences between the sexes, leaving only true sex differences between lambs for survivability. For single births, females tended to have greater survivability than males when adjusted for birth weight for all breeds but was only significant (P < 0.05) for Rambouillet and Targhee. For maternal breeds, females in twin litters had significantly greater survivability (P < 0.05) than their male counterparts when adjusted for birth weight; differences in terminal breeds were not significant (Table 1). Males in twin litters had heavier birth weights than females (P < 0.05) for all breeds. Triplet born females for all litter-sex combinations had significantly higher survival than males (P < 0.05) for Polypay when adjusted for birth weight. Females in female-female-male (FFM) litters had 76.4% survival versus 58.9% for males while females in female-male-male (FMM) litters had 75.9% versus 66.7% for males. When lamb survivability was adjusted for birth weight, Rambouillet females in FFM litters had 72.2% survival compared with 59.9% for males (P < 0.05) and females in FMM litters had 73.0% survival compared with 63.8% for males. Similar significant differences were observed for FFM and FMM Targhee litters. This study suggests lamb performance is influenced by its littermate(s). Changes in postnatal management of mixed-sex litters may benefit overall lamb survival. USDA is an equal opportunity provider and employer.
471 The use of infrared imaging of piglets to assess ocular surface temperature change before, during and after routine procedures
Authors: Mulvenna Christina , Domínguez-Oliva Adriana , Mote-Rojas Daniel , Hernández-Ávalos Ismael , Taylor James , Muns Ramon
Published: September 2024

Procedures including teeth clipping (TEE), tail docking (TAI), and ear tagging (TAG) are conducted routinely in commercial pig production units during the first days of life in piglets. However, as these procedures are conducted without anesthetics, there is controversy surrounding these procedures due to the pain/stress they may cause. The assessment of vasomotor activity using non-invasive infrared thermography (IRT) is increasingly being promoted as a tool to detect acute stress. The objective of this study was to assess changes in the ocular (OCU) window of piglets before, during and after each of the aforementioned procedures using IRT. This study used crossbred piglets (n = 116; Duroc Danish x Landrace x Large white) from multiparous sows. All thermographic images of piglets were taken between 0900 h and 1600 h using a high-resolution handheld infrared camera FLIR T650sc (640 x 480 pixels; FLIR Systems, Wilsonville, USA) at a uniform distance of 1 m on the left side of the face. To assess TEE, TAI and TAG procedures separately, a recovery period (12 ± 2.5 min) was allowed between procedures. Due to order differences in which procedures were conducted, the following study groups were created (procedures in brackets indicate the procedures performed prior to the focal procedure): TEE, (TEE+) TAI, (TEE+TAI+) TAG, TAI, (TAI+) TEE, (TAI+TEE+) TAG, TAG, (TAG+) TEE, (TAG+TEE+) TAI. Temperature values were recorded from images using FLIR Tools software 6.0 (FLIR Systems). Data were analyzed using a linear mixed model for repeated measures and multiple comparisons were calculated using a post-hoc Tukey test (GraphPad Prism 10.0.2). Table 1 shows the mean and standard deviation (SD) values for IRT recordings in the OCU window. Comparison of evaluation times showed a significant reduction in OCU temperature from before to after the procedure(s) in (TEE+) TAI (-1.21 °C, P < 0.001), (TAI+TEE+) TAG (-0.65 °C, P < 0.001), TAG (-0.58 °C, P < 0.05) and (TAG+TEE+) TAI (-0.3 °C, P < 0.01) groups. These changes in the OCU window of piglets may be in response to the procedures performed, resulting in a sympathetically mediated acute vasomotor response as cutaneous capillary blood flow shifts due to transient peripheral vasoconstriction. In turn, IRT detects this blood flow change as a reduction in surface temperature. Comparison between procedure groups found that mean OCU temperature during the procedure was greater (P = 0.01) in (TAI+) TEE and (TAG+) TEE than the rest of the groups, though the reason for this is unclear and requires further investigation. This work shows that IRT can be used as a non-invasive tool to detect surface temperature changes of piglets.
464 Awardee Talk: Gastrointestinal tract physiology in young pigs
Authors: Pluske John
Published: September 2024

It is indeed a great privilege to have been awarded the 2024 American Feed Industry Association Award in Nonruminant Nutrition Research. I am honored to follow in the footsteps of many great non-ruminant nutritionists in the industry. I commenced my career in the pork industry with a PhD in digestive nutritional physiology focusing on the newly weaned piglet that, some 35 yr later, is still the subject of significant interest amongst researchers, veterinarians and practitioners, and producers alike. My research was amongst the first to demonstrate direct relationships between voluntary feed intake after weaning and structure and function of the small intestine, corresponding to production consequences. To circumvent intestinal tract disturbances after weaning, antibiotic growth promotors (AGPs)/prophylactic levels of antibiotics and mineral compounds (e.g., ZnO) were routinely included in diets. With the withdrawal of AGPs and in some jurisdictions, in-feed medications and ZnO, the commercial importance of maximizing feed intake in the post-weaning period, with appropriate inclusion of fiber and selected feed additives, has become even more apparent. Some of the more recent work I have been involved in, still involving the gastrointestinal tract, has explored the interrelationships as to why progeny born to first-litter sows perform worse than progeny born to multiparous sows. This is a global issue for the pork industry, especially in view of increasing litter size, yet remains one that has been relatively underexplored. A series of Australian studies using primiparous and multiparous sows, and their progeny conducted on commercial farms confirmed these findings, and reported some significant physiological, immunological, and anatomical differences between piglets born to different parity mothers. Piglets born to first-litter sows are born and weaned lighter than their counterparts born to older sows, suggesting they suffer poorer acquisition of maternal immunity and delays in intestinal tract development and skeletal muscle both in utero and soon after birth, and around weaning. Piglets born to first-litter sows enter weaning with reduced intestinal tract integrity and show some signs of reduced immunocompetence, which taken together, may impede their ability to cope with the stressors of weaning. Weaned piglets are typically treated collectively and are not managed by parity, but lifelong consequences of being born to a first-litter sow suggests further work needs to be done in this field. Gastrointestinal tract structure and function in piglets, and indeed in all neonates, is intricately associated with ‘gut health’, which was a term not even in the lexicon of the pork industry when I began my career. It is pleasing to see that the study of the gastrointestinal tract continues today, stronger than ever, as advances in science and methodologies allow for greater introspection of this organ and its multi-directional influences on the biology of the pig.
411 Designing academic talent pipelines to meet employment needs of the animal science industry
Authors: Larson Haley E
Published: September 2024

While industry and academia serve different roles when it comes to propelling the animal science industry forward, there is a need to more formally bridge efforts between industry and academia when developing employees, both future and current. Commencement speeches typically include reflections on the great accomplishments students will achieve as they begin their industry careers. But how do animal science educators ensure programming is designed to fill the learner’s metaphoric toolbox with the right skills to tackle the complicated, and ever-evolving challenges of the animal science industry? Design of academic programming needs to be strategic and interdisciplinary in order to equip graduates with the skills needed to solve the wicked problems present in animal science. Often the design process begins with an identified need or gap in knowledge that industry has observed or anticipates based on strategic initiatives. Once a connection is made between a segment of the industry and an academic institution with the willingness to fill the education gap surrounding the identified industry problem, a pipeline of employees educated in that area of need can be established. There are three key characteristics often observed when evaluating successful academic talent pipelines. First, industry must be integrated into all aspects of the process: development, launch, and delivery. Involving subject matter experience from industry allows for real-world experience-based learning in a variety of forms. This could be on-site tours/training, connecting students with industry mentors, or bringing industry-based guest lecturers and panels into the classroom for students to network with. Industry has specific views on how they want to be involved with academia, listening to that feedback ensures respectful use of professional’s time, and effective education for future employees helping with job placement. Secondly, successful academic talent pipeline programs are able to embrace interdisciplinary skill development, while not losing sight of students’ areas of interest. It is crucial that as students are recruited to industry need-based programs, students see clear connections between skills learned and real-world application. Thirdly, successful programs meet students where they are. There is a growing population of students pursuing non-traditional education pathways to meet their career goals. Academic programs need to be prepared to train both the next generation as well as the current generation of employees in the animal science industry. While the diversity in student background experience escalates dramatically when you blend traditional and non-traditional students in the classroom, the enriching insight and discussion that follows a well-designed program highlights the importance of leveraging experience-based learning and fostering an inclusive environment for all types of learners.
140 Effects of ɷ-3 PUFA supplementation during late gestation to first-calf beef heifers on physiological and performance responses of offspring
Authors: Cruz Vinicius Alves , Marques Rodrigo , Ogg Makayla A , Cidrini Iorrano A , Nascimento Keuven , Limede Arnaldo C Cintra , McCoski Sarah , Posbergh Christian , Bradbery Amanda N , Mercadante Vitor R G , Harvey Kelsey M , Cordero Juan , Cooke Reinaldo F
Published: September 2024

The objectives of this experiment were to evaluate the effects of ɷ-3 PUFA supplementation to late gestation first-calf beef heifers on milk and immunoglobulin production and performance and physiological responses of the offspring. Non-lactating, pregnant Angus heifers (n = 44) were ranked by age, body weight (BW), and body condition score (BCS) and allocated to receive DDG + 1 of the 2 treatments: 1) 234 g/heifer per feeding of Ca salts of PUFA based on eicosapentaenoic (EPA) and docosahexaenoic (DHA) acids (OMG, Strata; Virtus Nutrition LLC, Corcoran, CA; n = 22), 2) 234 g/heifer per feeding of Ca salts of saturated and monosaturated fatty acids based on palmitic and oleic acids (CON; EnerGII, Virtus Nutrition, LLC; n = 22; Table 1). The animals were gathered each week on Mondays, Wednesdays, and Fridays and individually fed DDG + treatments. Immediately after calving, heifer-calf pairs were removed from their respective treatments and assigned to the general management of the research herd until weaning, which did not include fatty acid supplementation. Calves were transported to a feedyard for a 90-d preconditioning and feedlot receiving period. Initial cow BW and BCS were similar (P ≥ 0.49) among treatments. No differences were also detected (P ≥ 0.33) for BW or BCS change, and at calving BW or BCS (Table 3). No differences were observed between groups for average colostrum composition (P > 0.37). However, there was an increase in colostrum fat percentage (P = 0.03) and a tendency of greater concentration of colostrum IgG (P = 0.08) in OMG heifers compared with the control group. No significant differences were observed among treatments at calving results (P > 0.83; Table 3). However, a tendency was observed for crown to rump measure (P = 0.07). During the preconditioning period, there was a difference among groups for final BW (P = 0.04) and average daily gain (ADG; P = 0.05), remaining throughout the receiving phase among treatments for initial BW (P = 0.04), final BW (P = 0.04) and ADG (P = 0.05). A tendency (P = 0.09) for greater NEFA concentration and greater cortisol concentrations (P = 0.05) was observed in OMG vs. CON cohorts (Table 4, Table 5). Supplementation during late gestating first-calf beef heifers yielded similar outcomes on cow and offspring performance from birth to weaning; however, OMG calves were 6 kg heavier when compared with CON after being fed a high-energy feedlot diet, meaning that ɷ-3 PUFAs supplemented during late gestation might be an alternative to optimize feedlot responses of the offspring.
285 The effect of repeated lipopolysaccharide endotoxin challenge on immune response of breeding ewes
Authors: Austin Molly M , Arellanes Jeffrey Dominguez , Salas Yulianna , Soto-Navarro Sergio A , Gifford Craig A , Gifford Jennifer A
Published: September 2024

Infectious disease caused by exposure to the gram-negative bacterial endotoxin lipopolysaccharide (LPS) is recognized to suppress female fertility. However, the effect of varying low dose endotoxin exposure during the distinct stages of follicle development on immune response, and reproductive and lamb performance has yet to be elucidated. Therefore, the objective of this study was to evaluate acute phase response, mRNA abundance of inflammatory markers, reproductive performance and lamb growth characteristics of ewes challenged with subclinical doses of LPS. Rambouillet ewes [n = 36; body weight (BW) = 68.2 1.1 kg; age 3 to 7 yr] were stratified by BW and age and assigned to treatment groups. Ewes received subcutaneous injections of saline (CON, n = 12), 1.5 g/kg BW LPS (LOW, n = 12), or 3.0 g/kg BW LPS (HIGH, n = 12) on d 5, 10, and 15 of a synchronized follicular wave. Ewes were subsequently placed with a rattle-painted ram on d 16 for a 35-d breeding season. On treatment d 5 and 15, blood samples, peripheral blood leukocytes and rectal temperature were collected prior to and at regular intervals for 12 h after LPS challenge. Immune response to LPS was confirmed by an increase in rectal temperature and serum cortisol concentration on d 5 and 15. Endotoxin increased circulating plasma concentrations of the acute phase protein, haptoglobin, in both LPS-treated groups on d 5 and 15 at 12 h compared with control (P < 0.05). Pro- and anti-inflammatory genes were evaluated by real time polymerase chain reaction and demonstrated no differences in gene expression for tumor necrosis factor a, superoxide dismutase 2, or peroxisome proliferator-activated receptor gamma among treatment groups. Toll-like receptor 4 was similar among treatment groups on d 5; however, ewes challenged with LPS on d 15 displayed greater expression of toll-like receptor 4 compared with controls 2 to 6 h after LPS (P < 0.05). A robust induction of interleukin-8 was noted in low-LPS treated ewes compared with control and high-LPS treatment groups on d 5 from 2.5 to 6 h (P < 0.05) and on d 15 at 2.5 h (P < 0.05). First service conception rates were 80% for control ewes and 75% for both treated groups (P = 0.925). Lamb birth weight was reduced (P = 0.05) in response to LPS treatment. This reduction in birth weight resulted in reduced 60-d adjusted weaning weight (P = 0.09). Subacute endotoxin exposure aligning with key follicle and oocyte maturation events results in detrimental growth performance of the subsequent lamb.
PSII-1 Weaning as prenatal stress: preliminary study on indicators of calf resiliency
Authors: Goldhawk Christy , Orsel Karin , Pajor Edmond A
Published: September 2024

Maternal stressors have been reported to alter fetal development in many species. During pregnancy beef cattle are subjected to different potential stressors, such as weaning their current offspring, as part of beef production practices. The objective of this study was to investigate the relationship between weaning method as a prenatal maternal stress and the effect on offspring resiliency. Multiparous cows were weaned of their calves in the fall of 2022 using either abrupt (A), fenceline (F), or nose-flap (N) weaning methods (n = 30 per group). Calves born from these cows the following spring (2023) were followed for birthweights, morbidity, and mortality. Mean estimated fetal age at exposure was 126 d (range 66 to 219 d) using breed averages for gestational length. Cognitive tests were performed at 2 mo of age using an outdoor arena to continuously monitor calves during 2 min of initial isolation, 2 min exposed to a novel object, and 1 min of exposure to a human in the arena. Tests were performed sequentially, and treatments were balanced across days. Prenatal exposure to A was associated with a 74.8 (2.5 to 2,237.3, P < 0.01) and 21.5 (1.2 to 385.7, P = 0.03) times increase in the odds of calves being stillborn or failure to thrive within 24 h of birth compared with F or N, respectively. There was no difference in morbidity or mortality during d 1 to 60. Birthweights were available on one-half of the calves from each group and showed no statistical difference; however, there was a 4.53 kg numerical difference between A and N groups. Behavioral data from a subset of 36 calves (A = 14, F = 11, and N = 11) was assessed for time spent standing, moving, exploring, duration in the open center vs. perimeter of the arena. There was a tendency for A exposed calves to spend more time in the perimeter after being confronted with a novel object compared with N exposed calves (mean difference of percent of total test time in perimeter from isolation to novel object test: A = 24.0 ± 23.9 %, N = -2.9 ± 22.1 %, P = 0.08). Fenceline exposed calves spent more time moving during initial isolation than either abrupt or nose-flap (69.3 ± 14.7 %, 50.6 ± 11.9 %, and 69.9 ± 17.8 % for A, F, N, respectively (P = 0.01 for A vs F and F vs N). These behavioral and physiological indicators support a potential divergence in survivability and coping mechanisms associated with prenatal exposure to different weaning methods. Future research will evaluate different dimensions of cognitive performance as well as increasing sample size.
PSII-2 Does environmental feeder enrichment for weaned pigs drive feeder usage and improve final body weight?
Authors: Fortney Daytona , Sundman Emiline R , Gabler Nicholas K , Millman Suzanne T , Johnson Anna K
Published: September 2024

Transition from the sow to nursery pens is a stressful time for pigs and commonly leads to post-weaning anorexia and growth check. This can have negative impacts on pig health, welfare, and lifetime performance. The objective of this study was to test the relationship between enrichment use and feeder use immediately post-weaning on final nursery pig body weight (BW). At arrival, 29 mixed-sex pigs (Camborough 1050 X 337, PIC), 19 to 24d of age, were randomly sorted into 3 pens (~0.29 m2/pig) at the Iowa State University Swine Nutrition Farm. Each pen was equipped with a 4-hole, dry self-feeder measuring 0.6 m long. Each pen had two enrichment devices, consisting of one cotton rope and two biscuits, suspended from the feeder at pig height. Biscuits were replaced daily. Total number of interactions with the enrichment and feeder were collected at the individual pig level. All pigs were continually observed for two 1 h periods (h 1 and the h 6 after biscuit replacement) each day over wk 1 (d 0 – d 6). A pig was considered interacting with enrichment if its snout contacted the rope or enrichment biscuit. A pig was considered interacting with the feeder if 1) its head was over the feeder tray, and 2) its nose down in the feeder. Both enrichment and feeder interactions were considered terminated if the pig ceased active interaction for 3 s or more. Behaviors were summed together by time period and day for each pig. Individual BW were taken at the end of the 42-d nursery study. After the nursery trial was completed, the 29 pigs were allocated to a light BW treatment (n = 14) and a heavy BW treatment (n = 15) using the final average BW (24.22 kg) of the. Pigs with a final BW lighter than the group average were assigned to the light treatment, while pigs with a heavier BW than average were assigned to the heavy treatment. T-tests were conducted for enrichment and feeder interactions by final BW group and the pig was the experimental unit. A P ≤ 0.05 was considered significant. There were no observed differences between final pig body weight treatments and the enrichment and feeder interactions over the first week of nursery (P ≤ 0.87). Numerically, there were more overall enrichment interactions than feeder interactions for both BW treatments over wk 1 (Table 1). In conclusion, this enrichment device was of biological interest to the pigs, but other factors impact feeder usage in the first week and need to be considered in future work.
PSII-5 Effect of short-term feeding of hemp (Cannabis sativa) on stress biomarkers in weaned beef calves
Authors: Ogunkunle Nathaniel , Simpson Monya , Samuel Felix U , Jones Kendra , Herring Joshua , AbdelRahim Gamal Eden
Published: September 2024

Hemp research is growing rapidly due to its health benefits for animals; however, there is little information on its effects on stress. The objective of this study was to determine the effects of hemp supplementation on stress biomarkers in beef calves during weaning. Calves (n = 12) were completely randomized into Control (CC: received commercial concentrates before and after weaning), Treatment 1 (CH: received commercial concentrates before weaning and 25 g of hemp diet after weaning), Treatment 2 (HC: received 25 g hemp diet before weaning and commercial concentrates after weaning) and Treatment 3 (HH: received 25 g hemp diet before and after weaning). The study lasted for 28 d; blood samples were collected at 7-d intervals for enzyme-linked immunosorbent assay. Plasma was analyzed for heat shock protein 90, cortisol, haptoglobin, total antioxidant capacity, and glutathione peroxidase. There was treatment x time interaction in cortisol concentrations, with the (CH) group showing the greatest concentration of cortisol (124.23 ng/mL) in wk 3. There was no significant (P = 0.0675) difference in total antioxidant capacity. There was a treatment x time interaction (P = 0.0009) in glutathione peroxidase concentrations, with the (HH) group showing the greatest concentration of glutathione peroxidase of 46.83 ng/mL in wk 2 and 47.57ng/mL in wk 3. There was no significant (P < 0.05) difference in heat shock protein and haptoglobin. We concluded that hemp supplementation could reduce weaning stress in beef cattle, thereby improving the productivity and performance of beef calves
PSVII-1 Widespread allele-specific expression across tissues and cells of the chicken genome
Authors: de Lima Andressa Oliveira , Ng Theros T , Drechsler Yvonne , Hawkins R David
Published: September 2024

Chickens are a valuable livestock species, providing an affordable and nutritious food source worldwide through eggs and meat. Additionally, chickens are extensively used in scientific research as model organisms in virology, immunology, epigenetics, development, and conservation biology. Considering this, there are increasing efforts to deepen our understanding of their genome complexity, such as efforts by the Functional Annotation of Animal Genomes (FAANG) Consortium. Toward this goal, we are working to contribute to the annotation of the chicken transcriptome. Allele-specific expression (ASE) is an imbalance of allelic gene expression often driven by genetic and epigenetic changes in cis-regulatory regions. We, therefore, aimed to determine allelic imbalances in gene expression across 20 tissues and cells to shed light on mechanisms regulating gene expression. Using replicate paired-end (PE) RNA-seq samples, we identified around 7 million variants across 20 tissues and cells (e.g., reproductive tissues, intestine tissues, muscle, and immune tissues and cells). We applied quality control measures and filtered out monoallelic and homozygous variants. After that, we calculated read counts per allele to determine allelic expression. We found 365,894 significant ASE SNPs and 11,530 ASE genes in at least one tissue or cell type (FDR ≤ 0.05). We discovered that ASE SNPs are widely distributed throughout the chicken genome, and ASE SNPs and ASE genes showed a varied distribution across tissues and cells. Primary macrophage exhibited the most abundant, while the pectoralis major (breast muscle) had the lowest ASE genes and ASE SNPs, ranging from 7,592 to 32,505 ASE SNPs and 773 to 2,387 ASE genes. Our findings reveal several important pathways affected by allelic imbalance of expression. These pathways included fatty acid biosynthesis and regulation, cell proliferation and differentiation, cell metabolism, adipocytokine signaling, proteolysis and autophagy, and focal adhesion. In summary, our study provides insight into relevant biological processes critical to chickens and can contribute to improving genome annotation, helping to expand the transcriptomic reference source.
PSVII-6 Gender prediction in Hanwoo cattle using custom SNP arrays
Authors: Seong Ha-Seung , Park Mina , Cho Chung-Il , Lee Seung-Soo , Dang Chang-Gwon , Lee Jae-Gu , Cha Jaebeom , Lee Sang-Min , Alam Mahboob
Published: September 2024

Hanwoo is one of the indigenous cattle breeds in South Korea, and genetic evaluation at the national level is conducted using custom Illumina SNP arrays. Accurate gender assignment is essential in genetic evaluation and breeding programs for livestock species. In this study, we described a method for using custom single nucleotide polymorphism (SNP) array data to predict gender of Hanwoo cattle using logistic regression model. We analyzed a set of 958 SNPs, with 947 located on the X chromosome and 11 on the Y chromosome, focusing on heterozygosity rates from the X chromosome and missing rates from Y chromosome SNPs. Using a training dataset comprising 5,000 bulls and 2,005 cows with accurately recorded genders, we built a prediction model. Subsequently, we evaluated the performance of the model on test datasets consisting of 6,657 bulls, 27 steers, and 8,418 cows. The concordance between predicted gender and recorded gender were 99.98%, 100.00% and 99.98% for bulls, steers, and cows, respectively. This result showed better accuracy of gender prediction compared with the GENOMESTUDIO tool that uses only the heterozygosity rate of SNPs in X chromosome in the case of restricted number of SNPs in sex chromosomes. Overall, our findings could be used as an effective method for more precise genetic evaluation by correcting potential gender errors in Hanwoo cattle breeding programs.
PSIII-28 Evaluation of tissue and plasma meloxicam concentrations using a microneedle patch for drug delivery
Authors: Midkiff Kirsten A , Miranda-Munoz Katherine , Cheek Robin A , Tsai Tsung Cheng Cheng , Bear Misty , Kompalage Kushan , Tucker Ryan , Culbertson Christopher , Coetzee Hans F , Kegley Elizabeth B , Almodovar Jorge , Powell Jeremy G
Published: September 2024

The objective of this study was to evaluate plasma and ear tissue meloxicam concentrations when the drug was delivered using two different formulations of a microneedle patch placed on the back of the ear. Nursing pigs [n = 10; body weight (BW) = 3.64 ± 0.32 kg) from 1 litter were assigned randomly to 1 of 2 treatment groups. Patches delivered 2.5 mg of meloxicam/kg BW to pigs regardless of formulation, with the differences in patches being based on type of polymer located on the microneedles and base of the patch. Treatment groups were: 1) pigs receiving a microneedle patch with collagen, polyvinyl alcohol (PVA), and meloxicam on the microneedles, with PVA and chitosan on the base (n = 6 pigs; Patch A); and 2) pigs receiving a microneedle patch with chitosan, PVA, and meloxicam on the microneedles, with collagen and PVA on the base (n = 4 pigs; Patch B). During the study, pigs remained in the crate with the sow and littermates. An Estrotect Breeding Indicator strip was used to adhere the microneedle patch on the ear of the pigs. Blood was collected at study initiation prior to patch administration (0 h) and 24 and 48 h for plasma meloxicam analysis. To evaluate tissue meloxicam concentrations, 3 pigs that received Patch A and 2 pigs that received Patch B were humanely euthanized after blood collection and patch removal at 24 and 48 h, with the entirety of the ear removed for analysis. Statistical analyses were performed using the MIXED procedure of SAS 9.4 (Cary, NC) to assess the effects of treatment, hour, and treatment × hour interaction. Statistical significance was determined at P ≤ 0.05, with tendencies at 0.05 < P ≤ 0.1. There were no differences (P = 0.83) between patch formulations for tissue meloxicam concentrations (Patch A = 6.55 ± 2.12 ng/mg; Patch B = 7.32 ± 2.60 ng/mg). Plasma concentrations were not detectable at any time point, but tissue concentrations of meloxicam were detectable for pigs that received either patch formulation at 24 (5.44 ± 2.37 ng/mg) and 48 h (8.42 ± 2.37 ng/mg). There were no differences (P = 0.41) between patch formulations for tissue meloxicam concentrations at either timepoint, nor was there an interaction of patch formulation and hour (P = 0.73). It is unknown why the meloxicam did not diffuse from the ear tissue into the plasma; however, further studies will focus on applying the microneedle patch at different areas on the animal to allow for optimal diffusion through the skin and into blood circulation for pain mitigation in livestock animals.
PSIV-23 Transcriptomic analysis revealed the mechanisms of resilience and susceptibility to nonalcoholic steatohepatitis in dairy goats under high-concentrate diet
Authors: Wang Yue , Chen Xiaodong , Huws Sharon A , Wu Shengru , Yao Junhu , Guan Leluo
Published: September 2024

Liver health is vital for growth and health of ruminants, which can directly affect their performance. High-concentrate diet (HCD) feeding, a common practice to meet the energy requirements for animal production and growth, has been known to induce liver damage, including nonalcoholic fatty liver (NAFL) and nonalcoholic steatohepatitis (NASH) in ruminants. To date, the regulatory mechanisms of liver metabolic dysfunctions in ruminants induced by HCD are not well defined. To elucidate molecular regulatory mechanisms underlying liver dysfunction in ruminants, we compared liver transcriptome and single-cell transcriptome of dairy goats that had varied responses to the HCD, aiming to underpin the key mechanisms behind resilience and susceptibility to NASH in ruminants. After feeding 30 dairy goats with low-concentrate diet (LCD, n = 15, defined as Con) or high-concentrate diet (HCD, n = 15) for 6 wk, 10 of them developed NASH (defined as NASH), while the other 5 did not showed any NASH symptom (defined as NASH-tolerance, NASH-T) under HCD. Liver tissues were collected to extract RNA. The paired-end RNA-seq library was sequenced with a NovaSeq6000 sequencer (Illumina). Real-time quantitative PCR was conducted to verify the significantly different genes among groups. Liver single-cell transcriptome was performed using 10×Genomics Chromium system. Liver transcriptome analysis revealed that the expression level of genes involved in the interleukin (IL)-17 signaling pathway, including IL-17A (P = 0.035; 0.001), Act1 (P = 0.036; 0.002), FOSB (P = 0.041; 0.048) and IL-1β (P = 0.022; 0.002) in the NASH group were significantly greater than those in the Con and NASH-T groups. Hepatic single-cell RNA sequencing identified seven cell types in the liver, including hepatocytes, macrophages, T cells, endothelial cell, natural killer (NK) cell, hepatic stellate cells (HSCs), B cells. In T cell subset, significantly decreased T helper 17 (TH17) cells and increased regulatory T (Treg) cells were detected in the NASH group compared with Con and NASH-T groups. In TH17 cell, the expression levels of IL-17A (P = 0.004; 0.009) and IL-23R (P = 0.007; 0.01; the surface antibodies of TH17 cells) in NASH group were significantly greater than those in the Con and NASH-T groups. The expression levels of Foxp3 (P < 0.001; 0.013), IL-2R (P < 0.001; 0.001), CTLA-4 (P = 0.005; 0.017) and CD127 (P = 0.004; 0.009; the surface antibodies of Treg cells) in NASH group were significantly less than those in the Con and NASH-T groups. Our results revealed the role of liver immune cells in maintaining tolerance to NASH in dairy goats under HCD, which provides new understanding in pathogenesis of NASH under HCD. Further studies are needed to identify major factors that drive the changes of ratio of TH17/Treg cell.
PSI-8 Inflammatory cytokine concentrations and gene expression in mature and aging sedentary horses
Authors: DiSilvestro Adrianna N , Wesolowski Lauren T , Semanchik Pier L , Simons Jessica L , Seward Lee , Beer Christina , Barnes Lisa , White-Springer Sarah H
Published: September 2024

Chronic inflammation associated with aging, termed “inflamm-aging” may negatively impact overall animal health. However, the mechanisms of inflamm-aging and, therefore, effective interventions, remain unknown. Nuclear factor erythroid 2-related factor 2 (Nrf2; NFE2L2) is a transcription factor that controls antioxidant gene expression and could be a target for promoting anti-inflammatory pathways. To test the hypothesis that supplementation of nonenzymatic derived antioxidants (Protandim Nrf2 Synergizer, LifeVantage Corporation) would activate Nrf2 and mitigate inflammation, 40 mature, sedentary horses [32 mares, 8 geldings; 15.7 ± 4.9 yr of age, body weight (BW) = 519 ± 46 kg] were stratified by age, sex, and BW and randomly assigned to one of four dietary treatment groups for 56 d: 1) 0 mg (CON); 2) 675 mg (Pro1); 3) 2,025 mg (Pro3); or 4) 4,050 mg (Pro6) Protandim Nrf2 Synergizer per day (n = 10 per group). Blood samples were collected at d 0 (September, 27°C, 61.6% humidity), d 28 (October, 21.6°C, 55.8% humidity), and d 56 (November, 15.1°C, 73.8% humidity) of supplementation prior to the morning feeding. Plasma cytokine concentrations of tumor necrosis factor (TNF)-α, interleukin (IL)-4, IL-6, IL-8, and IL-10 were quantified using custom Meso Scale Discovery U-Plex kits and whole blood gene expression of IL-1β, NFE2L2, and heme oxygenase 1 (HMOX1) were determined using qRT-PCR. Data were analyzed using PROC MIXED in SAS v9.4 with sex, time, treatment, age (under or over 15 yr), and time × treatment as fixed effects and time as a repeated effect with horse(treatment) as the subject. Day 0 was included as a covariate when treatment groups differed at d 0. Relationships between age and cytokine concentrations or mRNA expression were determined using PROC CORR. Plasma IL-4 (r = 0.4054) concentrations as well as whole blood HMOX1 (r = 0.3437) and NFE2L2 (r = 0.3382) expression on d 0 were positively correlated with age (P ≤ 0.04). Regardless of treatment or age, IL-1β and NFE2L2 expression and IL-4 and IL-8 concentrations decreased from d 0 to 28 (P ≤ 0.03) and remained depressed at d 56 (P ≤ 0.02) while IL-10 was not different from d 0 to 28 but decreased from d 0 to 56 (P = 0.02). TNFα concentrations were not different between treatments or over time. These data corroborate increased inflammatory markers with age and suggest a change in inflammatory status over time potentially due to seasonal environmental factors.
PSI-13 The impact of divergent nutritional planes on systemic immune status in mature bulls
Authors: Hamilton Holly E , Shepherd Elizabeth , Zoca Saulo M , Dahlen Carl R , Snider Alexandria P , McLean Kyle J
Published: September 2024

Bull fertility is a major component of reproductive efficiency. One of the many factors influencing reproductive efficiency in bulls is nutrition. Improper nutrition influences physiological features, such as body weight (BW) and body condition scores (BCS), but also increases stress, which can alter the molecular composition of ejaculate. Following a breeding soundness exam and a 21-d dietary adjustment period, mature Angus bulls (n = 6) were randomly assigned to one of two nutritional planes for a 119-d period: 1) restriction (RES; targeted a 1.36 kg/d decrease in BW) or 2) maintenance (MNT; targeted to maintain BW). Body weight and BCS were evaluated every 14 d and feed amounts were adjusted to meet BW targets. On d 73 and 93, scrotal circumference and blood samples were collected for analysis. Serum samples were evaluated for an immunity score using the Nano Discovery D2Dx Immunity Test, that assesses samples for the presence of immunoglobulin (Ig) G, IgM, cytokines, and complement. Statistical analyses were conducted using R Studio to determine the effects of day, nutritional plane, and the interaction of day Î nutritional plane on BW, BCS, scrotal circumference, and systemic immunity score. At the onset of treatments, all bulls had a greater (P = 0.008) BW (845.5 ± 17.0 kg) and BCS (6.3 ± 0.15) than on d 73 (BW = 757.2 ± 17.0 kg; BCS = 5.5 ± 0.15, respectively) or 93 (BW = 749.6 ± 17.0 kg; BCS = 5.3 ± 0.15, respectively). According to the experimental model design, the MNT bulls had a greater (P = 0.001) BCS (6.1 ± 0.12) compared with the RES bulls (5.3 ± 0.12) throughout treatment. Body weights were also influenced by treatment with MNT bulls (845.7 ± 13.9 kg) having a greater BW (P > 0.001) compared with RES bulls (714.6 ± 13.9). Immunity scores were greater in the RES bulls (0.03 ± 0.003) compared with MNT bulls (0.003 ± 0.003). However, there was no effect of day or the interaction effect (P > 0.05) on the systemic immunity score. There was also no effect of day, nutritional plane, or interaction on scrotal circumference (P > 0.23). In conclusion, we observed nutritional planes to result in divergent BW and BCS and were influential on systemic immunity scores, which may lead to different seminal plasma compositions and reproductive outcomes. Further analyses are needed to elucidate the effects of paternal nutritional stress on the female uterine response after mating and reproductive efficiency. The authors would like to thank USDA-NIFA-AFRI (#2023-67015-39453) and USDA-NIFA Multi-State Project No. 1019048 for providing funding and support for this research. USDA is an equal opportunity employer and provider.
PSI-7 Creation of gene-edited pigs for functional analysis of growth hormone receptor promoters in swine
Authors: Denton Alicia N , Lucas Caroline G , Safranski Timothy J , Prather Randall S , Wells Kevin D , Restrepo Diana Canaveral , Lucy Matthew C
Published: September 2024

Growth hormone (GH; somatotropin) has a central role in animal growth, reproduction, and lactation. The biological actions of GH are dependent on the GH receptor (GHR) that is found in important target tissues such as liver, muscle, adipose tissue, and bone. It is widely accepted that GH is the primary hormone controlling animal growth and that its actions are mediated by the GHR. In humans, laboratory species, and farm animals there are two promoter complexes that control GHR expression. The first promoter complex (P1) controls the liver-specific inducible expression of the GHR1A mRNA. The second promoter complex (P2) controls the non-tissue specific constitutive expression of GHR1B mRNA. Despite the central role that GH and the GHR have in animal growth, the independent function of each promoter complex has not yet been tested in any species. The objective was to perform a germ-line deletion of each GHR promoter complex to test their function in a porcine model. The CRISPR/Cas9 system was used to delete the P1 and P2 promoter complexes in porcine fetal fibroblasts and cloned to create two independent lines for each promoter deletion. Adult animals that were heterozygous (het) for the GHRP1 and GHRP2 deletions were mated to create litters of +/+ (wildtype, WT), +/- (het), and -/- (knockout, KO) pigs for the respective promoters. An RTPCR of liver and muscle confirmed that deletion of GHRP1 and GHRP2 effectively knocked out GHR1A and GHR1B mRNA. Piglets were weighed at birth and approximately monthly until 2 (GHRP1) or 5 (GHRP2) mo of age. Piglets from the GHRP1 line were +/+ (n = 3), +/- (n = 10), and -/- (n = 2) across two litters. Birthweights (1.5 ± 0.1, 1.4 ± 0.1, and 1.5 ± 0.2 kg, respectively) and body weight (BW) at 2 mo of age (32.7 ± 2.9, 27.0 ± 1.6, and 27.0 ± 3.5 kg, respectively) were similar (P > 0.10) for GHRP1 piglets. Piglets from the GHRP2 line were +/+ (n = 2), +/- (n = 6), and -/- (n = 9) across two litters. Birthweights were similar (1.4 ± 0.3, 1.3 ± 0.1, and 1.0 ± 0.1 kg, respectively) but GHRP2-/- pigs weighed less (P < 0.01) at weaning compared with GHRP2+/+ or GHRP2+/- piglets (6.4 ± 0.8, 6.5 ± 0.4, and 4.5 ± 0.4 kg, respectively). Monthly BW for the GHRP2-/- piglets were less (P < 0.001) when compared with GHRP2+/+ or GHRP2+/- piglets. At 5 mo of age, the GHRP2-/- piglets were approximately 50% of the BW of GHRP2+/+ or GHRP2+/- (89.6 ± 6.7, 89.6 ± 3.9, and 43.1 ± 3.2 kg, respectively). In conclusion, the deletion of GHRP2 (and GHR1B mRNA) had a profound effect on pig growth. The GHRP1 deletion (GHR1A mRNA) did not affect growth with the caveat that the GHRP1 litters had not reached maturity. This work was supported by USDA NIFA 2019-67015-29484.