bluuebunny/crossref_metadata_2025 huggingface dataset:
Prediction of multiglandular parathyroid disease in primary hyperparathyroidism using ultrasound and clinical features
Authors: Luo Yanwen , Jin Siqi , He Yudi , Fang Song , Wang Ou , Liao Quan , Li Jianchu , Jiang Yuxin , Zhu Qingli , Liu He
Published: March 2023

Background

Identification of multigland disease (MGD) in primary hyperparathyroidism (PHPT) patients is essential for minimally invasive surgical decision-making.

Objective

To develop a nomogram based on US findings and clinical factors to predict MGD in PHPT patients.

Materials and Methods

Patients with PHPT who underwent surgery between March 2021 and January 2022 were consecutively enrolled. Biochemical and clinicopathologic data were recorded. US images were analyzed to extract US features. Logistic regression analyses were used to identify the risk factors for MGD. The nomogram was constructed based on the factors. Nomogram performance was evaluated by area under the receiver operating characteristic curve (AUC), calibration curve, the Hosmer–Lemeshow test, and decision curve analysis.

Results

A total of 102 PHPT patients were included. 82 (80.4%) had the single-gland disease (SGD) and 20 (19.6%) had MGD. Using multivariate analysis, the MGD was positively correlated with age (OR = 1.033, 96%CI = 0.985-1.092), PTH level (OR = 1.001, 95% CI = 1.000–1.002), MEN-1 (OR = 29.730, 95% CI = 3.089-836.785), US size (OR = 1.198, 95% CI = 0.647–2.088) and US texture (cystic-solid) (OR = 5.357, 95% CI = 0.499–62.912). And negatively correlated with gender (OR = 0.985, 95% CI = 0.190–4.047), calcium level (OR = 0.453, 95% CI = 0.070–2.448), and symptoms(yes) (OR = 0.935, 95%CI = 0.257–3.365). The nomogram showed good discrimination with an AUC of 0.77 (0.68-0.85) and good agreement for predicting MGD in PHPT patients. And 65 points was recommended as a cut-off value with a specificity of 0.94 and a sensitivity of 0.50.

Conclusion

US provided useful features for evaluating MGD. Combining the US and clinical features in a nomogram showed good diagnostic performance for predicting MGD.
Single-cell RNA sequencing reveals in vivo osteoimmunology interactions between the immune and skeletal systems
Authors: Wang Shengran , Greenbaum Jonathan , Qiu Chuan , Gong Yun , Wang Zun , Lin Xu , Liu Yong , He Pei , Meng Xianghe , Zhang Qiang , Shen Hui , Vemulapalli Krishna Chandra , Sanchez Fernando L. , Schiller Martin R. , Xiao Hongmei , Deng Hongwen
Published: March 2023

Background

While osteoimmunology interactions between the immune and skeletal systems are known to play an important role in osteoblast development, differentiation and bone metabolism related disease like osteoporosis, such interactions in either bone microenvironment or peripheral circulation in vivo at the single-cell resolution have not yet been characterized.

Methods

We explored the osteoimmunology communications between immune cells and osteoblastic lineage cells (OBCs) by performing CellphoneDB and CellChat analyses with single-cell RNA sequencing (scRNA-seq) data from human femoral head. We also explored the osteoimmunology effects of immune cells in peripheral circulation on skeletal phenotypes. We used a scRNA-seq dataset of peripheral blood monocytes (PBMs) to perform deconvolution analysis. Then weighted gene co-expression network analysis (WGCNA) was used to identify monocyte subtype-specific subnetworks. We next used cell-specific network (CSN) and the least absolute shrinkage and selection operator (LASSO) to analyze the correlation of a gene subnetwork identified by WGCNA with bone mineral density (BMD).

Results

We constructed immune cell and OBC communication networks and further identified L-R genes, such as JAG1 and NOTCH1/2, with ossification related functions. We also found a Mono4 related subnetwork that may relate to BMD variation in both older males and postmenopausal female subjects.

Conclusions

This is the first study to identify numerous ligand-receptor pairs that likely mediate signals between immune cells and osteoblastic lineage cells. This establishes a foundation to reveal advanced and in-depth osteoimmunology interactions to better understand the relationship between local bone microenvironment and immune cells in peripheral blood and the impact on bone phenotypes.
Applications of machine learning approaches in aerodynamic aspects of axial flow compressors: A review
Authors: Pakatchian Mohammad Reza , Ziamolki Alireza , Alhuyi Nazari Mohammad
Published: March 2023

A compressor is one of the key components of a gas turbine engine and its performance and characteristics significantly affect the overall performance of the engine. Axial flow compressors are one of the most conventional types of compressors and are widely used in turbine engines for large-scale power generation. Intelligent techniques are useful for numerical simulation, characterization of axial compressors, and predicting their performance. The present work reviews studies applying different intelligent methods for performance forecasting and modeling different aerodynamic aspects of axial compressors. Corresponding to the outcomes of the considered research works, it can be expressed that by using these methods, axial compressors can be characterized properly with acceptable exactness. In addition, these techniques are useful for performance prediction of the compressors. The accuracy and performance of these methods is impacted by several elements, specifically the employed method and applied input variables. Finally, some suggestions are made for future studies in the field.
Experimental study on the rotating detonation engine based on a gas mixture
Authors: Xue Sainan , Zhang Xin , Yang Jianlu , Liu Denghang , Ma Hu , Zhou Changsheng
Published: March 2023

A direct connection test of a rotating detonation engine was conducted. The outer and inner diameters of the annular combustors were 206 and 166 mm, respectively. High enthalpy air was used as an oxidizer, and a mixture of hydrogen, carbon monoxide, and methane was used as fuel with a volume fraction of 5/4/1. The mixture was injected through small holes, and air was injected through annular slots. The effects of combustor length, width of annular slots, and the equivalent ratio on formation, development, propagation, and flameout of rotating detonation waves were analyzed, and several modes of rotating detonation were observed. It was found that when the width of the air annular slot was within the range of 3–5 mm, the pressure of the detonation wave was augmented with an increased slot width. As width increased, detonation waves became unstable. In study test conditions, an annular slot width of 6 mm was the critical condition for the formation of stable detonation. When the slot width was 4 mm and combustor length 160 mm, the phenomena of the conversion between single and double waves, double-wave collision, and conversion of the propagation direction occurred at different equivalent ratios. When the equivalent ratio was 1.2/1 and the slot width was within the range of 3–6 mm, the slot width was inversely related to the detonation wave velocity. When the slot width was 4 mm and the equivalent ratio was 1.0/1–1.2/1, the slot width was positively correlated with the detonation wave velocity. When the combustor length was shortened to 80 mm, the propagation mode of the detonation wave was changed to a single wave first and then to a double wave in the same direction, and the velocity reduced from 1130.69 to 1024.16 m/s. The injector used in the test inhibited the propagation of back pressure from the combustor.
Individual tree-based forest species diversity estimation by classification and clustering methods using UAV data
Authors: Li Xiuwen , Zheng Zhaoju , Xu Cong , Zhao Ping , Chen Junhua , Wu Jinchen , Zhao Xueming , Mu Xuan , Zhao Dan , Zeng Yuan
Published: March 2023

Monitoring forest species diversity is essential for biodiversity conservation and ecological management. Currently, unmanned aerial vehicle (UAV) remote sensing technology has been increasingly used in biodiversity monitoring due to its flexibility and low cost. In this study, we compared two methods for estimating forest species diversity indices, namely the spectral angle mapper (SAM) classification approach based on the established species-spectral library, and the self-adaptive Fuzzy C-Means (FCM) clustering algorithm by selected biochemical and structural features. We conducted this study in two complex subtropical forest areas, Mazongling (MZL) and Gonggashan (GGS) National Nature Forest Reserves using UAV-borne hyperspectral and LiDAR data. The results showed that the classification method performed better with higher values of R2 than the clustering algorithm for predicting both species richness (0.62 > 0.46 for MZL and 0.55 > 0.46 for GGS) and Shannon-Wiener index (0.64 > 0.58 for MZL, 0.52 > 0.47 for GGS). However, the Simpson index estimated by the classification method correlated less with the field measurements than the clustering algorithm (R2 = 0.44 and 0.83 for MZL and R2 = 0.44 and 0.62 for GGS). Our study demonstrated that the classification method could provide more accurate monitoring of forest diversity indices but requires spectral information of all dominant tree species at individual canopy scale. By comparison, the clustering method might introduce uncertainties due to the amounts of biochemical and structural inputs derived from the hyperspectral and LiDAR data, but it could acquire forest diversity patterns rapidly without distinguishing the specific tree species. Our findings underlined the advantages of UAV remote sensing for monitoring the species diversity in complex forest ecosystems and discussed the applicability of classification and clustering methods for estimating different individual tree-based species diversity indices.
Predictive short/long-term efficacy biomarkers and resistance mechanisms of CD19-directed CAR-T immunotherapy in relapsed/refractory B-cell lymphomas
Authors: Xu Hao , Li Ningwen , Wang Gaoxiang , Cao Yang
Published: March 2023

Genetically modified T-cell immunotherapies are revolutionizing the therapeutic options for hematological malignancies, especially those of B-cell origin. Impressive efficacies of CD19-directed chimeric antigen receptor (CAR)-T therapy have been reported in refractory/relapsed (R/R) B-cell non-Hodgkin lymphoma (NHL) patients who were resistant to current standard therapies, with a complete remission (CR) rate of approximately 50%. At the same time, problems of resistance and relapse following CAR-T therapy have drawn growing attention. Recently, great efforts have been made to determine various factors that are connected to the responses and outcomes following CAR-T therapy, which may not only allow us to recognize those with a higher likelihood of responding and who could benefit most from the therapy but also identify those with a high risk of resistance and relapse and to whom further appropriate treatment should be administered following CAR-T therapy. Thus, we concentrate on the biomarkers that can predict responses and outcomes after CD19-directed CAR-T immunotherapy. Furthermore, the mechanisms that may lead to treatment failure are also discussed in this review.
Advances in CRISPR/Cas gene therapy for inborn errors of immunity
Authors: Liu Xinyi , Li Guanglei , Liu Yin , Zhou Fuling , Huang Xingxu , Li Kui
Published: March 2023

Inborn errors of immunity (IEIs) are a group of inherited disorders caused by mutations in the protein-coding genes involved in innate and/or adaptive immunity. Hematopoietic stem cell transplantation (HSCT) is a mainstay definitive therapy for many severe IEIs. However, the lack of HLA-matched donors increases the risk of developing severe immunological complications. Gene therapy provides long-term clinical benefits and could be an attractive therapeutic strategy for IEIs. In this review, we describe the development and evolution of clustered regularly interspaced short palindromic repeat (CRISPR)/CRISPR-associated proteins (Cas) gene-editing systems, including double-strand break (DSB)-based gene editing and DSB-free base editing or prime editing systems. Here, we discuss the advances in and issues associated with CRISPR/Cas gene editing tools and their potential as therapeutic alternatives for IEIs. We also highlight the progress of preclinical studies for the treatment of human genetic diseases, including IEIs, using CRISR/Cas and ongoing clinical trials based on this versatile technology.
Impaired tolerance to the autoantigen LL-37 in acute coronary syndrome
Authors: Chernomordik Fernando , Cercek Bojan , Zhou Jianchang , Zhao Xiaoning , Lio Nicole Wai Man , Chyu Kuang-Yuh , Shah Prediman K. , Dimayuga Paul C.
Published: March 2023

Background

LL-37 is the only member of the cathelicidin family of antimicrobial peptides in humans and is an autoantigen in several autoimmune diseases and in acute coronary syndrome (ACS). In this report, we profiled the specific T cell response to the autoimmune self-antigen LL-37 and investigated the factors modulating the response in peripheral blood mononuclear cells (PBMCs) of healthy subjects and ACS patients.

Methods and results

The activation induced marker (AIM) assay demonstrated differential T cell profiles characterized by the persistence of CD134 and CD137, markers that impair tolerance and promote immune effector and memory response, in ACS compared to Controls. Specifically, CD8+CD69+CD137+ T cells were significantly increased by LL-37 stimulation in ACS PBMCs. T effector cell response to LL-37 were either HLA dependent or independent as determined by blocking with monoclonal antibody to either Class-I HLA or Class-II HLA. Blocking of immune checkpoints PD-1 and CTLA-4 demonstrated the control of self-reactive T cell response to LL-37 was modulated predominantly by CTLA-4. Platelets from healthy controls down-modulated CD8+CD69+CD137+ T cell response to LL-37 in autologous PBMCs. CD8+CD69+CD137+ T cell AIM profile negatively correlated with platelet count in ACS patients.

Conclusions

Our report demonstrates that the immune response to the autoantigen LL-37 in ACS patients is characterized specifically by CD8+CD69+CD137+ T cell AIM profile with persistent T cell activation and the generation of immunologic memory. The results provide potentially novel insight into mechanistic pathways of antigen-specific immune signaling in ACS.
Analysis of necroptosis-related prognostic genes and immune infiltration in idiopathic pulmonary fibrosis
Authors: Chen Hongzuo , Xia Zhenkun , Qing Bei , Wang Wei , Gu Linguo , Chen Ying , Wang Juan , Yuan Yunchang
Published: March 2023

Background

IPF is an undetermined, progressive lung disease. Necroptosis is a type of programmed apoptosis, which involved in the pathogenesis of lung diseases like COPD and ARDS. However, necroptosis in IPF have not been adequately studied. This study aimed to investigate the necroptosis in IPF and the relationship between necroptosis and immune infiltration, to construct a prognostic prediction model of IPF based on necroptosis-related genes.

Methods

GSE110147 was downloaded from the GEO database and utilized to analyze the expression of necroptosis-related differentially expressed genes (NRDEGs). Then NRDEGs were used to construct protein-protein interaction (PPI) networks in the STRING database, and Cytoscape software was used to identify and visualize hub genes. Necroptosis-related prognosticgenes were explored in GSE70866, and a prognostic prediction model was constructed. The ImmuCellAI algorithm was utilized to analyze the landscape of immune infiltration in GSE110147. The single-cell RNA sequencing dataset GSE122960 was used to explore the association between necroptosis and type II alveolar epithelial cells (AT II) in IPF. The GSE213001 and GSE93606 were used for external validation. The expression of prognostic genes was quantified using RT-qPCRin the IPF A549 cell model, and was further verified by western blotting in the bleomycin-induced pulmonary fibrosis mouse model.

Results

It was observed that necroptosis-related signaling pathways were abundantly enriched in IPF. 29 NRDEGs were screened, of which 12 showed consistent expression trends in GSE213001. Spearman correlation analysis showed that the expression of NRDEGs was positively correlated with the infiltration of proinflammatory immune cells, and negatively correlated with the infiltration of anti-inflammatory immune cells. NRDEGs, including MLKL, were highly expressed in AT II of fibrotic lung tissue. A necroptosis-related prediction model was constructed based on 4 NRDEGsby the cox stepwise regression. In the validation dataset GSE93606, the prognostic prediction model showed good applicability. The verification results of RT-qPCR and western blotting showed the reliability of most of the conclusions.

Conclusions

This study revealed that necroptosis existed in IPF and might occur in AT II. Necroptosis was associated with immune infiltration, suggesting that necroptosis of AT II might involve in IPF by activating immune infiltration and immune response.
Alpha-linolenic acid pretreatment alleviates NETs-induced alveolar macrophage pyroptosis by inhibiting pyrin inflammasome activation in a mouse model of sepsis-induced ALI/ARDS
Authors: Liu Chenchen , Zhou Yu , Tu Qing , Yao Liangfang , Li Jinbao , Yang Zhongwei
Published: March 2023

Background

Neutrophil extracellular traps (NETs) can cause acute lung injury (ALI)/acute respiratory distress syndrome (ARDS) by inducing macrophage pyroptosis. The purpose of this study was to find out whether pretreatment of alpha-linolenic acid (ALA) could inhibit NETs-induced macrophage pyroptosis in sepsis-induced ALI/ARDS, as well as to identify which inflammasome is involved in this process.

Methods

LPS was instilled into the trachea to establish sepsis-induced ALI/ARDS in a mouse model. ​Lung injury was assessed by microscopic examination of lung tissue after hematoxylin and eosin staining, pathology score, and bronchoalveolar lavage fluid (BALF) total protein concentration. The level of NETs in lung tissue was detected by MPO-DNA ELISA. Purified NETs, extracted from peritoneal neutrophils, induced macrophage pyroptosis in vitro. Expression of pyroptosis-related proteins (Cl-caspase-1, Cl-GSDMD, ASC) and IL-1β in the lung tissue and bone marrow-derived macrophages (BMDMs) were determined by western blotting or ELISA. Specks of Pyrin/ASC were examined by confocal immunofluorescence microscopy. Mefv (Pyrin)-/- mice were used to study the role of Pyrin in the process of sepsis-induced ALI/ARDS.

Results

ALA alleviated LPS-induced lung injury. ALA reduced the level of NETs, pyroptosis-related proteins (Cl-caspase-1, Cl-GSDMD, ASC), and IL-1β in the lung tissue of sepsis mice. In vitro, NETs increased the expression of pyroptosis-related proteins (Cl-caspase-1, Cl-GSDMD, ASC) and IL-1β significantly in BMDMs. Pyrin protein was found to be higher and form the inflammasome with ASC in NETs challenged-BMDMs. Knockout of Mefv (Pyrin) gene fully restored the increased expression of pyroptosis-related proteins (Cl-caspase-1, Cl-GSDMD, ASC) and IL-1β in vitro and in vivo. Lung injury was alleviated significantly in Mefv (Pyrin)-/- mice as well.​ ALA suppresses all the NETs-induced changes as mentioned above.

Conclusion

Our study is the first to demonstrate Pyrin inflammasome driving NETs-induced macrophage pyroptosis, and ALA may reduce ALI/ARDS by inhibiting the activation of the Pyrin inflammasome-driven macrophage pyroptosis.
FGL2 deficiency alleviates maternal inflammation-induced blood-brain barrier damage by blocking PI3K/NF-κB mediated endothelial oxidative stress
Authors: Huang Lianjing , Zhan Di , Xing Ying , Yan Yaqin , Li Qing , Zhang Jingyi , Li Sujuan , Ning Qin , Zhang Cai , Luo Xiaoping
Published: March 2023

Introduction

The impairment of blood-brain barrier (BBB) is one of the key contributors to maternal inflammation induced brain damage in offspring. Our previous studies showed Fibrinogen-like protein 2 (FGL2) deficiency alleviated maternal inflammation induced perinatal brain damage. However, its role in BBB remains undefined.

Methods

Lipopolysaccharide (LPS) was intraperitoneally injected to dams at Embryonic day 17 to establish maternal inflammation model. FGL2 knockout mice and primary brain microvascular endothelial cells (BMECs) were used for the in-vivo and in-vitro experiments. BBB integrity was assessed by sodium fluorescein extravasation and tight junction (TJ) protein expression. Oxidative stress and the activation of PI3K/NF-κB pathway were evaluated to explore the mechanisms underlying.

Results

Upon maternal inflammation, BBB integrity was remarkedly reduced in neonatal mice. Meanwhile, FGL2 expression was consistently increased in BBB-impaired brain as well as in LPS-treated BMECs. Moreover, FGL2 deficiency attenuated the hyperpermeability of BBB, prevented the decline of TJ proteins, and reduced the cytokine expressions in LPS-exposed pups. Mechanistically, the indicators of oxidative stress, as well as the activation of PI3K/NF-κB pathway, were upregulated after LPS exposure in vivo and in vitro. FGL2 deletion decreased the generation of ROS and NO, reduced the endothelial iNOS and NOX2 expressions, and suppressed the PI3K/NF-κB pathway activation. Besides, inhibition of PI3K by LY294002 decreased the oxidative stress in LPS-treated wild-type BMECs. While, overexpression of PI3K by lentivirus reemerged the induction of NOX2 and iNOS as well as NF-κB activation in FGL2-deleted BMECs.

Conclusion

Our findings indicate that FGL2 deficiency alleviates the maternal inflammation-induced BBB disruption by inhibiting PI3K/NF-κB mediated oxidative stress in BMECs. Targeting FGL2 may provide a new therapy for prenatal brain damage of offspring.
Effects of supplemental octanoate on hepatic lipid metabolism, serum biochemical indexes, antioxidant capacity and inflammation-related genes expression of large yellow croaker (Larimichthys crocea) fed with high soybean oil diet
Authors: Zhao Manxi , Zhang Zhou , Liu Yongtao , Zhang Wencong , Gong Ye , Tang Yuhang , Chen Fan , Zhang Jianmin , Liu Guobin , Zhang Haitao , Li Yueru , Mai Kangsen , Ai Qinghui
Published: March 2023

Dietary high soybean oil (SO) levels might cause hepatic lipid deposition, induce oxidative stress and inflammatory response in aquatic animals, while octanoate (OCT) is beneficial to metabolism and health in mammals. However, the effect of OCT has been studied rarely in aquatic animals. In this study, a 10-week feeding trial was conducted to investigate the effect of supplemental OCT on hepatic lipid metabolism, serum biochemical indexes, antioxidant capacity and inflammatory response of large yellow croaker (Larimichthys crocea) fed with high SO levels diet. The negative control diet contained 7% fish oil (FO), while the positive control diet contained 7% SO. The other four experimental diets were supplemented with 0.7, 2.1, 6.3 and 18.9 g/kg sodium octanoate (OCT) based on the positive control diet. Results showed that OCT supplementation effectively reduced the hepatic crude lipid, triglyceride (TG), total cholesterol (TC) and non-esterified free fatty acids contents, and alleviated lipid accumulation caused by the SO diet. Meanwhile, OCT supplementation decreased the serum TG, TC, alanine transaminase, aspartate transaminase and low-density lipoprotein cholesterol levels, increased the serum high-density lipoprotein cholesterol level, improved the serum lipid profiles and alleviated hepatic injury. Furthermore, with the supplementation of OCT, the mRNA expression of genes related to lipogenesis (acc1, scd1, fas, srebp1, dgat1 and cebpα) and fatty acid (FA) transport (fabp3, fatp and cd36) were down-regulated, while the mRNA expression of genes related to lipolysis (atgl, hsl and lpl) and FA β-oxidation (cpt1 and mcad) were up-regulated. Besides that, dietary OCT increased the total antioxidant capacity, activities of peroxidase, catalase and superoxide dismutase and the content of reduced glutathione, decreased the content of 8-hydroxy-deoxyguanosine and malondialdehyde and relieved hepatic oxidative stress. Supplementation of 0.7 and 2.1 g/kg OCT down-regulated the mRNA expression of genes related to pro-inflammatory cytokines (tnfα, il1β and ifnγ), and suppressed hepatic inflammatory response. In conclusion, supplementation with 0.7-2.1 g/kg OCT could reduce hepatic lipid accumulation, relieve oxidative stress and regulate inflammatory response in large yellow croaker fed the diet with high SO levels, providing a new way to alleviate the hepatic fat deposition in aquatic animals.
An investigation on the effects of increasing maximum wind speed of tropical cyclones on the return periods of water levels in the sea area of the Yangtze River Delta
Authors: Pan Yi , Li Weihan , Tan Jiahui , Yu Pubing , Chen Xinping , Chen Yongping
Published: March 2023

This paper investigates the impact of increasing maximum wind speed of tropical cyclones on the return periods of water levels in the sea area of the Yangtze River Delta. To conduct this study, a series of numerical experiments are performed using historical tropical cyclones that impacted the Yangtze River Delta from 1949 to 2019. The aim is to analyze the effects of global climate change on extreme water levels and the corresponding return periods. To obtain the historical water levels in the sea areas of the Yangtze River Delta, a storm surge model is driven by the selected tropical cyclones. The simulated astronomical tidal levels during the same period are also used. The extreme water levels of different return periods are then calculated. The maximum wind speeds of the selected tropical cyclones are increased by 11% according to the expected amount of increase under global climate change. The extreme water levels of different return periods under this scenario are calculated with the same procedure. The results of the study show that the impact of increasing maximum wind speed of tropical cyclones on the increases of extreme water levels and the decrease of return periods is more significant in the inner area of the estuaries than in the outer areas. Moreover, the responses of the extreme water levels and the corresponding return periods in the Yangtze River Estuary and the Hangzhou Bay show different characteristics. The results of this study provide significant reference value for the management of future coastal disaster prevention and mitigation in the Yangtze River Delta. Furthermore, the methodology used in this study can be applied in other estuaries to investigate the potential impacts of changes in climate and hydrology factors on extreme water levels and the corresponding return periods.
The influence of contact relaxation on underwater noise emission and seabed vibrations due to offshore vibratory pile installation
Authors: Molenkamp Timo , Tsouvalas Apostolos , Metrikine Andrei
Published: March 2023

The growing interest in offshore wind leads to an increasing number of wind farms planned to be constructed in the coming years. Installation of these piles often causes high underwater noise levels that harm aquatic life. State-of-the-art models have problems predicting the noise and seabed vibrations from vibratory pile driving. A significant reason for that is the modeling of the sediment and its interaction with the driven pile. In principle, linear vibroacoustic models assume perfect contact between pile and soil, i.e., no pile slip. In this study, this pile-soil interface condition is relaxed, and a slip condition is implemented that allows vertical motion of the pile relative to the soil. First, a model is developed which employs contact spring elements between the pile and the soil, allowing the former to move relative to the latter in the vertical direction. The developed model is then verified against a finite element software. Second, a parametric study is conducted to investigate the effect of the interface conditions on the emitted wave field. The results show that the noise generation mechanism depends strongly on the interface conditions. Third, this study concludes that models developed to predict noise emission from impact pile driving are not directly suitable for vibratory pile driving since the pile-soil interaction becomes essential for noise generation in the latter case.
Vertical distribution of pH in the top ~10 m of deep-ocean sediments: Analysis of a unique dataset
Authors: Shao Changgao , Tang DanLing , Legendre Louis , Sui Yi , Wang Hongbin
Published: March 2023

We analyze, for the first time in the oceanographic literature, pH over the top ~10 m of the sediment (down to 11.9 m) in a deep-sea environment, together with the oxidation/reduction potential and concentrations of solid organic carbon (OC) and CaCO3. A total of 1157 sediment cores were collected from years 2000 to 2011 over >300,000 km2 in the South China Sea, at water depths up to 3702 m. We found that there were marked downward pH increases in the upper 2 m of the sediment (first 20-40 ka, corresponding to the geochemically active period). In deeper, older sediment (up to 200 ka), pH was generally less variable with depth but not uniform, and solid OC may have been consumed down to ≥10 m depth. This reflected interactions between in situ geochemical diagenetic processes, which tended to create vertical variations, and vertical diffusion of ions, which tended to even out vertical variability. In other words, there were slow diagenetic geochemical processes in the sediment layer below 2 m, and the effects of these in situ processes were partly offset by vertical diffusion. Overall, our study identified a previously unknown consistent pH difference between the upper 2 m of the sediment and the underlying layer down to ≥10 m, and suggested combinations of geochemical diagenetic processes and vertical diffusion of ions in the porewater to explain it. These results provide a framework for further studies of pH in the top multi-meter layer of the sediment in the World Ocean.
Effects of nitrogen addition and plant litter manipulation on soil fungal and bacterial communities in a semiarid sandy land
Authors: Zhan Jin , Li Yulin , Zhao Xueyong , Yang Hongling , Ning Zhiying , Zhang Rui
Published: March 2023

The plant and soil microbial communities are influenced by variability in environmental conditions (e.g., nitrogen addition); however, it is unclear how long-term nitrogen addition and litter manipulation affect soil microbial communities in a semiarid sandy grassland. Therefore, we simulated the impact of N addition and litter manipulation (litter removal, litter doubling) on plant and soil microbial communities in Horqin grassland, northern China through an experiment from 2014 to 2019. Our results revealed that in the case of non-nitrogen (N0), litter manipulation significantly reduced vegetation coverage (V) (p < 0.05); soil bacterial communities have higher alpha diversity than that of the fungi, and the beta diversity of soil fungi was higher than that of the bacteria; soil microbial alpha diversity was significantly decreased by nitrogen addition (N10) (p < 0.05); N addition and litter manipulation had significantly interactive influences on soil microbial beta diversity, and litter manipulation (C0 and C2) had significantly decreased soil microbial beta diversity (p < 0.05) in the case of nitrogen addition (N10) (p < 0.05). Moreover, bacteria were mostly dominated by the universal phyla Proteobacteria, Actinobacteria, and Acidobacteria, and fungi were only dominated by Ascomycota. Furthermore, the correlation analysis, redundancy analysis (RDA), and variation partitioning analysis indicated that the soil fungi community was more apt to be influenced by plant community diversity. Our results provide evidence that plant and soil microbial community respond differently to the treatments of the 6-year N addition and litter manipulation in a semiarid sandy land.
An essential role of the reversible electron-bifurcating hydrogenase Hnd for ethanol oxidation in Solidesulfovibrio fructosivorans
Authors: Kpebe Arlette , Guendon Chloé , Payne Natalie , Ros Julien , Khelil Berbar Manel , Lebrun Régine , Baffert Carole , Shintu Laetitia , Brugna Myriam
Published: March 2023

The tetrameric cytoplasmic FeFe hydrogenase Hnd from Solidesulfovibrio fructosivorans (formely Desulfovibrio fructosovorans) catalyses H2 oxidation and couples the exergonic reduction of NAD+ to the endergonic reduction of a ferredoxin by using a flavin-based electron-bifurcating mechanism. Regarding its implication in the bacterial physiology, we previously showed that Hnd, which is non-essential when bacteria grow fermentatively on pyruvate, is involved in ethanol metabolism. Under these conditions, it consumes H2 to produce reducing equivalents for ethanol production as a fermentative product. In this study, the approach implemented was to compare the two S. fructosivorans WT and the hndD deletion mutant strains when grown on ethanol as the sole carbon and energy source. Based on the determination of bacterial growth, metabolite consumption and production, gene expression followed by RT-q-PCR, and Hnd protein level followed by mass spectrometry, our results confirm the role of Hnd hydrogenase in the ethanol metabolism and furthermore uncover for the first time an essential function for a Desulfovibrio hydrogenase. Hnd is unequivocally required for S. fructosivorans growth on ethanol, and we propose that it produces H2 from NADH and reduced ferredoxin generated by an alcohol dehydrogenase and an aldehyde ferredoxin oxidoreductase catalyzing the conversion of ethanol into acetate. The produced H2 could then be recycled and used for sulfate reduction. Hnd is thus a reversible hydrogenase that operates in H2-consumption by an electron-bifurcating mechanism during pyruvate fermentation and in H2-production by an electron-confurcating mechanism when the bacterium uses ethanol as electron donor.
Elevated serum platelet count inhibits the effects of brain functional changes on cognitive function in patients with mild cognitive impairment: A resting-state functional magnetic resonance imaging study
Authors: Zhang Yuechan , Liu Jing , Wei Zijun , Mei Jianing , Li Qianqian , Zhen Xiaomin , Zhang Yunyun
Published: March 2023

Objective

Brain function remodeling has been observed in patients with mild cognitive impairment (MCI) and is closely associated with cognitive performance. However, it is not clear if this relationship is influenced by complete blood counts. This study investigated the role of complete blood counts in the relationship between brain function and cognitive performance.

Methods

Twenty-two MCI patients and eighteen controls were enrolled. All subjects underwent resting-state functional magnetic resonance imaging. A neuropsychological battery [Mini-Mental Status Examination, Auditory Verbal Learning Test (AVLT), Symbol Digit Modalities Test, Boston Naming Test (BNT), Shape Trails Test B (STT-B), Rey Complex Figure Test (RCFT), Hamilton Anxiety Rating Scale (HAMA), and Hamilton Depression Scale] was used to assess cognitive function, and MCI patients received complete blood counts tests for red blood cells (RBC), white blood cells, hemoglobin (HGB), monocytes, and platelet counts (PLT).

Results

Compared with controls, MCI patients demonstrated significantly decreased amplitude of low-frequency fluctuation (ALFF) values in the left dorsolateral superior frontal gyrus, left post orbitofrontal cortex, right medial superior frontal gyrus, right insula, and left triangular inferior frontal gyrus. In the MCI group, there were associations between ALFF values of the left hippocampus (HIP.L) and AVLT (p = 0.003) and AVLT-N5 scores (p = 0.001); ALFF values of the right supramarginal gyrus (SMG.R) and BNT scores (p = 0.044); ALFF values of the right superior temporal gyrus (STG.R) and BNT scores (p = 0.022); ALFF values of the left precuneus (PCUN.L) and STT-B time (p = 0.012); and ALFF values of the left caudate nucleus (CAU.L) and RCFT-time (p = 0.036). Moreover, the HAMA scores were negatively correlated with RBC and HGB levels, and positively correlated with monocyte count. The PLT count was positively correlated with STT-B time. Additionally, high PLT count inhibited the effect of ALFF values of the PCUN. L on STT-B performance in MCI patients (p = 0.0207).

Conclusion

ALFF values of the HIP. L, SMG.R, STG. R, PCUN.L, and CAU. L were associated with decreased memory, language, executive function, and visuospatial ability in MCI patients. Notably, elevated PLT count could inhibit the effect of brain functional changes in the PCUN.L on executive function in MCI patients.
The signs of computer tomography combined with artificial intelligence can indicate the correlation between status of consciousness and primary brainstem hemorrhage of patients
Authors: Liu Guofang , Sun Juan , Zuo Shiyi , Zhang Lei , Cai Hanxu , Zhang Xiaolong , Hu Zhian , Liu Yong , Yao Zhongxiang
Published: March 2023

Background

For patients of primary brainstem hemorrhage (PBH), it is crucial to find a method that can quickly and accurately predict the correlation between status of consciousness and PBH.

Objective

To analyze the value of computer tomography (CT) signs in combination with artificial intelligence (AI) technique in predicting the correlation between status of consciousness and PBH.

Methods

A total of 120 patients with PBH were enrolled from August 2011 to March 2021 according to the criteria. Patients were divided into three groups [consciousness, minimally conscious state (MCS) and coma] based on the status of consciousness. Then, first, Mann–Whitney U test and Spearman rank correlation test were used on the factors: gender, age, stages of intracerebral hemorrhage, CT signs with AI or radiology physicians, hemorrhage involving the midbrain or ventricular system. We collected hemorrhage volumes and mean CT values with AI. Second, those significant factors were screened out by the Mann–Whitney U test and those highly or moderately correlated by Spearman’s rank correlation test, and a further ordinal multinomial logistic regression analysis was performed to find independent predictors of the status of consciousness. At last, receiver operating characteristic (ROC) curves were drawn to calculate the hemorrhage volume for predictively assessing the status of consciousness.

Results

Preliminary meaningful variables include hemorrhage involving the midbrain or ventricular system, hemorrhage volume, grade of hematoma shape and density, and CT value from Mann–Whitney U test and Spearman rank correlation test. It is further shown by ordinal multinomial logistic regression analysis that hemorrhage volume and hemorrhage involving the ventricular system are two major predictors of the status of consciousness. It showed from ROC that the hemorrhage volumes of <3.040 mL, 3.040 ~ 6.225 mL and >6.225 mL correspond to consciousness, MCS or coma, respectively. If the hemorrhage volume is the same, hemorrhage involving the ventricular system should be correlated with more severe disorders of consciousness (DOC).

Conclusion

CT signs combined with AI can predict the correlation between status of consciousness and PBH. Hemorrhage volume and hemorrhage involving the ventricular system are two independent factors, with hemorrhage volume in particular reaching quantitative predictions.
Recent progress in patent foramen ovale and related neurological diseases: A narrative review
Authors: Shi Fanfan , Sha Leihao , Li Hua , Tang Yusha , Huang Litao , Liu Huizhen , Li Xu , Li Lin , Yang Wenjie , Kang Deying , Chen Lei
Published: March 2023

Patent foramen ovale (PFO) is a common congenital cardiac abnormality when the opening of the interatrial septum is not closed in adulthood. This abnormality affects 25% of the general population. With the development of precision medicine, an increasing number of clinical studies have reported that PFO is closely related to various neurological diseases such as stroke, migraine, obstructive sleep apnea, and decompression syndrome. It has also been suggested that PFO closure could be effective for preventing and treating these neurological diseases. Therefore, increasing attention has been given to the prevention, diagnosis, and treatment of PFO-related neurological diseases. By reviewing existing literature, this article focuses on the pathogenesis, epidemiology, and clinical characteristics of PFO-related neurological diseases, as well as the prevention and treatment of different neurological diseases to discuss, and aims to provide current progress for this field and decision-making evidence for clinical practice.
Retinal ganglion cells adapt to ionic stress in experimental glaucoma
Authors: Boal Andrew M. , McGrady Nolan R. , Holden Joseph M. , Risner Michael L. , Calkins David J.
Published: March 2023

Introduction

Identification of early adaptive and maladaptive neuronal stress responses is an important step in developing targeted neuroprotective therapies for degenerative disease. In glaucoma, retinal ganglion cells (RGCs) and their axons undergo progressive degeneration resulting from stress driven by sensitivity to intraocular pressure (IOP). Despite therapies that can effectively manage IOP many patients progress to vision loss, necessitating development of neuronal-based therapies. Evidence from experimental models of glaucoma indicates that early in the disease RGCs experience altered excitability and are challenged with dysregulated potassium (K+) homeostasis. Previously we demonstrated that certain RGC types have distinct excitability profiles and thresholds for depolarization block, which are associated with sensitivity to extracellular K+.

Methods

Here, we used our inducible mouse model of glaucoma to investigate how RGC sensitivity to K+ changes with exposure to elevated IOP.

Results

In controls, conditions of increased K+ enhanced membrane depolarization, reduced action potential generation, and widened action potentials. Consistent with our previous work, 4 weeks of IOP elevation diminished RGC light-and current-evoked responses. Compared to controls, we found that IOP elevation reduced the effects of increased K+ on depolarization block threshold, with IOP-exposed cells maintaining greater excitability. Finally, IOP elevation did not alter axon initial segment dimensions, suggesting that structural plasticity alone cannot explain decreased K+ sensitivity.

Discussion

Thus, in response to prolonged IOP elevation RGCs undergo an adaptive process that reduces sensitivity to changes in K+ while diminishing excitability. These experiments give insight into the RGC response to IOP stress and lay the groundwork for mechanistic investigation into targets for neuroprotective therapy.
Eye movement characteristics in a mental rotation task presented in virtual reality
Authors: Tang Zhili , Liu Xiaoyu , Huo Hongqiang , Tang Min , Qiao Xiaofeng , Chen Duo , Dong Ying , Fan Linyuan , Wang Jinghui , Du Xin , Guo Jieyi , Tian Shan , Fan Yubo
Published: March 2023

Introduction

Eye-tracking technology provides a reliable and cost-effective approach to characterize mental representation according to specific patterns. Mental rotation tasks, referring to the mental representation and transformation of visual information, have been widely used to examine visuospatial ability. In these tasks, participants visually perceive three-dimensional (3D) objects and mentally rotate them until they identify whether the paired objects are identical or mirrored. In most studies, 3D objects are presented using two-dimensional (2D) images on a computer screen. Currently, visual neuroscience tends to investigate visual behavior responding to naturalistic stimuli rather than image stimuli. Virtual reality (VR) is an emerging technology used to provide naturalistic stimuli, allowing the investigation of behavioral features in an immersive environment similar to the real world. However, mental rotation tasks using 3D objects in immersive VR have been rarely reported.

Methods

Here, we designed a VR mental rotation task using 3D stimuli presented in a head-mounted display (HMD). An eye tracker incorporated into the HMD was used to examine eye movement characteristics during the task synchronically. The stimuli were virtual paired objects oriented at specific angular disparities (0, 60, 120, and 180°). We recruited thirty-three participants who were required to determine whether the paired 3D objects were identical or mirrored.

Results

Behavioral results demonstrated that the response times when comparing mirrored objects were longer than identical objects. Eye-movement results showed that the percent fixation time, the number of within-object fixations, and the number of saccades for the mirrored objects were significantly lower than that for the identical objects, providing further explanations for the behavioral results.

Discussion

In the present work, we examined behavioral and eye movement characteristics during a VR mental rotation task using 3D stimuli. Significant differences were observed in response times and eye movement metrics between identical and mirrored objects. The eye movement data provided further explanation for the behavioral results in the VR mental rotation task.
Heart failure and cognitive impairment: A narrative review of neuroimaging mechanism from the perspective of brain MRI
Authors: Li Tong , Bao Xiangyuan , Li Lin , Qin Rui , Li Cuicui , Wang Ximing
Published: March 2023

Both heart failure (HF) and cognitive impairment (CI) have a significant negative impact on the health of the elderly individuals. Magnetic resonance imaging (MRI) can non-invasively detect functional and structural variations in the heart and brain, making it easier to explore the connection between the heart and brain. According to neuroimaging studies, HF patients have a higher chance of developing CI because they have a variety of different types of brain injuries. To examine how HF and CI are influenced by one another, English-language literature was searched in the Web of Science, PubMed EMBASE (OVID), PsycInfo, and Scopus databases. The search terms included “high-frequency,” “brain function,” “brain injury,” “cognition,” “cognitive impairment,” and “magnetic resonance imaging.” Normal brain function is typically impaired by HF in the form of decreased cerebral perfusion pressure, inflammation, oxidative stress, and damage to the BBB, resulting in CI and subsequent HF. Early pathophysiological alterations in patients’ brains have been widely detected using a range of novel MRI techniques, opening up new avenues for investigating the connection between HF and CI. This review aims to describe the pathogenesis of HF with CI and the early diagnostic role of MRI in the heart-brain domain.