bluuebunny/crossref_metadata_2025 huggingface dataset:
Transcriptome and DNA Methylome Reveal Insights Into Phytoplasma Infection Responses in Mulberry (Morus multicaulis Perr.)
Authors: Liu Chaorui , Dong Xiaonan , Xu Yuqi , Dong Qing , Wang Yuqi , Gai Yingping , Ji Xianling
Published: August 2021

To reveal whether the response of mulberry to phytoplasma infection is associated with genome-wide DNA methylation changes, the methylome and transcriptome patterns of mulberry in response to phytoplasma infection were explored. Though the average methylation level of the infected leaves showed no significant difference from that of healthy leaves, there were 1,253 differentially methylated genes (DMGs) and 1,168 differentially expressed genes (DEGs) in the infected leaves, and 51 genes were found simultaneously to be differently methylated and expressed. It was found that the expression of G-type lectin S-receptor-like serine/threonine protein kinase gene (Mu-GsSRK) was increased, but its methylation level was decreased in the pathogen-infected or salicylic acid (SA)-treated leaves. Overexpression of Mu-GsSRK in Arabidopsis and in the hairy roots of mulberry enhanced transgenic plant resistance to the phytoplasma. Moreover, overexpression of Mu-GsSRK enhanced the expressions of pathogenesis-related protein 1, plant defensin, and cytochrome P450 protein CYP82C2 genes in transgenic plants inoculated with pathogens, which may contribute to the enhanced disease resistance against various pathogens. Finally, the DNA methylation dynamic patterns and functions of the differentially expressed and methylated genes were discussed. The results suggested that DNA methylation has important roles in mulberry responses to phytoplasma infection.
Auxin-Responsive R2R3-MYB Transcription Factors HcMYB1 and HcMYB2 Activate Volatile Biosynthesis in Hedychium coronarium Flowers
Authors: Ke Yanguo , Abbas Farhat , Zhou Yiwei , Yu Rangcai , Fan Yanping
Published: August 2021

Auxin, an important plant hormone, induces the biosynthesis of various secondary metabolites by modulating the expression of auxin-responsive genes. In the ornamental plant Hedychium coronarium, linalool and methyl benzoate are biosynthesized by the terpene synthase (TPS) HcTPS5 and the benzoic/salicylic acid methyltransferase (BSMT) HcBSMT2, respectively. However, the transcriptional regulation of this process remains unclear. Here, we identified and functionally characterized the R2R3-MYB transcription factors HcMYB1 and HcMYB2 in regulating the biosynthesis of these floral aroma compounds. HcMYB1 and HcMYB2 are specifically expressed in flowers, their expression is correlated with the emission of volatile compounds in flowers, and is induced by auxin. Moreover, HcMYB1 and HcMYB2 interact with the HcBSMT2 promoter region. HcMYB2 activates the expression of the linalool synthase gene HcTPS5. In flowers with HcMYB1 or HcMYB2 silenced, the levels of floral scent compounds were significantly reduced, and HcBSMT2 and HcTPS5 were downregulated compared with the wild type. Moreover, HcMYB1 form protein-protein interaction with key scent-related HcIAA4 protein to regulate floral aroma production. Taken together, these results indicate that HcMYB1 and HcMYB2 play crucial roles in regulating the formation of scent compounds in Hedychium coronarium (H. coronarium) flowers in response to auxin signaling.
Interactions Between Child Personality and Parenting in Relation to Child Well-Being: Support for Diathesis–Stress and Differential Susceptibility Patterns
Authors: Loginova Svetlana V. , Slobodskaya Helena R.
Published: August 2021

It is well-recognized that the individual characteristics of children moderate the effects of developmental conditions on the well-being of a child. The majority of interactions follow a diathesis–stress pattern; there is also evidence for differential susceptibility and vantage sensitivity models. The present study aimed to examine interactions between parenting and child personality in relation to the well-being of a Russian child and to evaluate the models for moderated relationships. Participants were primary caregivers of 370 children aged 2–7 years. Moderation effects were examined using hierarchical multiple regression and bivariate linear models. In order to differentiate between the models of environmental sensitivity, the analysis of regions of significance was used. Consistent with a diathesis–stress framework, the results revealed that among children low in conscientiousness and high in activity, punitive parenting was a risk factor for externalizing problems; among introverted and fearful children, punitive parenting was a risk factor for internalizing problems. Positive parenting/involvement was a protective factor for internalizing behavior, only for children low in openness. The findings also demonstrate the following evidence for the differential susceptibility model: children low in Beta higher-order personality trait (also known as plasticity or personal growth) showed more total problems when faced with low positive parenting, but fewer problems when experiencing high-quality parenting.
Sleep-Wake Behavior in Elite Athletes: A Mixed-Method Approach
Authors: de Blasiis Kévin , Joncheray Hélène , Elefteriou Julia , Lesenne Chloé , Nedelec Mathieu
Published: August 2021

Purpose

Using a mixed-method approach, this investigation aimed to examine athletes’ sleeping patterns along with the socio-physiological acute and chronic stressors affecting their sleep.

Methods

Fifteen elite athletes (Mage = 21.7 years; SD = 2.2) were monitored daily during a typical in-season training period (20 ± 1 days) and completed individual semi-structured interviews. Their sleep was analyzed using actigraphy and sleep diaries. A content analysis method was used to assess qualitative interviews.

Results

Three factors influencing sleep emerged from the qualitative interview analyses, i.e., sleep environment, training and study requirements. Half the athletes (8/15) complained about their sleeping environment with noise and/or bedroom temperature and/or mattress quality and/or light exposure presented as an issue. “Complainers” notably exhibited impaired (p < 0.05) sleep efficiency and wake after sleep onset compared with “non-complainers.” Daily training load showed correlations (p < 0.05) with wake after sleep onset and sleep onset latency. “Student athletes” exhibited later bedtime and earlier wake-up time compared with “non-student athletes,” leading to a reduced total sleep time (6:50 ± 1:13 vs. 7:06 ± 0:53; p < 0.05; d = 0.20).

Conclusion

An individualized assessment of sleep using actigraphy and interviews, with consideration to various socio-physiological factors, is recommended. Individualized sleep interventions with consideration to physiological (e.g., training load), behavioral (e.g., screen use) and environmental factors (e.g., room temperature, noise, mattress), can then be provided to each athlete.
Affordance in Socio-Material Networks: A Mixed Method Study of Researchers' Groups and Analog-Digital Objects
Authors: Belli Simone
Published: August 2021

In this paper, we argue that we can better understand the relationship between social interaction and materiality by linking qualitative analysis of analog and digital practices, adopting Basov's model of socio-material networks. Our research questions turn about the interrogation of how social links distress the usage of analog and digital objects by researchers. We consider scientific networks with the relationship between researchers and their tools as a three-level social material network. It sheds light on how different types of researchers position their engagement with analog and digital materiality over time and its affordance and emotional attachment. This study contributes to the understanding of researchers' practices that involve new and old techniques and specific and not-specific tools.
Clinical Application of the Fluid Challenge Approach in Goal-Directed Fluid Therapy: What Can We Learn From Human Studies?
Authors: Teixeira-Neto Francisco José , Valverde Alexander
Published: August 2021

Resuscitative fluid therapy aims to increase stroke volume (SV) and cardiac output (CO) and restore/improve tissue oxygen delivery in patients with circulatory failure. In individualized goal-directed fluid therapy (GDFT), fluids are titrated based on the assessment of responsiveness status (i.e., the ability of an individual to increase SV and CO in response to volume expansion). Fluid administration may increase venous return, SV and CO, but these effects may not be predictable in the clinical setting. The fluid challenge (FC) approach, which consists on the intravenous administration of small aliquots of fluids, over a relatively short period of time, to test if a patient has a preload reserve (i.e., the relative position on the Frank-Starling curve), has been used to guide fluid administration in critically ill humans. In responders to volume expansion (defined as individuals where SV or CO increases ≥10–15% from pre FC values), FC administration is repeated until the individual no longer presents a preload reserve (i.e., until increases in SV or CO are <10–15% from values preceding each FC) or until other signs of shock are resolved (e.g., hypotension). Even with the most recent technological developments, reliable and practical measurement of the response variable (SV or CO changes induced by a FC) has posed a challenge in GDFT. Among the methods used to evaluate fluid responsiveness in the human medical field, measurement of aortic flow velocity time integral by point-of-care echocardiography has been implemented as a surrogate of SV changes induced by a FC and seems a promising non-invasive tool to guide FC administration in animals with signs of circulatory failure. This narrative review discusses the development of GDFT based on the FC approach and the response variables used to assess fluid responsiveness status in humans and animals, aiming to open new perspectives on the application of this concept to the veterinary field.
Effects of Dietary Supplementation of Algae-Derived Polysaccharides on Morphology, Tight Junctions, Antioxidant Capacity and Immune Response of Duodenum in Broilers under Heat Stress
Authors: Liu Wen-Chao , Zhu Yan-Ru , Zhao Zhi-Hui , Jiang Ping , Yin Fu-Quan
Published: August 2021

To evaluate the ameliorative effect of algae-derived polysaccharide (ADP) supplementation on duodenal injury caused by heat stress (HS) in broilers, a total of 144 male yellow-feathered broilers (56-day-old) were randomly allocated into three groups: The TN group (thermoneutral zone, broilers were raised at 23.6 ± 1.8 °C); HS group (heat stress, broilers were exposed to 33.2 ± 1.5 °C 10 h/day, 8:00 a.m.–18:00 p.m., the temperature in the remaining period was consistent with the TN group); HSA group (heat-stressed broilers were fed with ADP supplemented diet at 1000 mg/kg). There were six replications in each treatment, and eight broilers in each replication. The feeding trial lasted four weeks. The results showed that dietary ADP supplementation tended to increase the villus height (p = 0.077) and villus width (p = 0.062), and decrease the apoptosis rate (p = 0.081) in the duodenum of broilers under HS. Furthermore, dietary ADP increased the relative mRNA and protein (based on immunofluorescence) expression levels of occludin and zonula occludens-1 (ZO-1) in the duodenum of broilers under HS (p < 0.05). In addition, dietary ADP enhanced the total antioxidation capacity (T-AOC) and activity of glutathione-S transferase (GST), while reducing the malondialdehyde (MDA) concentration of the duodenum in broilers under HS (p < 0.05). Moreover, dietary ADP supplementation upregulated the duodenal nuclear factor erythroid 2-related factor 2 (Nrf2), heme oxygenase-1 (HO-1), glutathione peroxidase 1 (GPx1) and glutathione S-transferase theta 1 (GSTT1) mRNA expression levels in heat-stressed broilers (p < 0.05). Furthermore, compared with the HS group, broilers fed with an ADP supplemented diet had a higher relative mRNA expression of inhibitor kappa B alpha (IκBα) (p < 0.05) and a lower relative mRNA expression of tumor necrosis factor-α (TNF-α) and interleukin-1β (IL-1β) in the duodenum (p < 0.05). In summary, dietary ADP supplementation had an ameliorative effect on HS-induced impairment of tight junctions, antioxidant capacity and the immune response of the duodenum in broilers. These beneficial effects might be related to the modulation of Nrf2 and NF-κB signaling pathways.
How Has the COVID-19 Pandemic Affected the Way We Access and Interact with the Countryside and the Animals within It?
Authors: Hockenhull Jo , Squibb Keith , Cameron Amelia
Published: August 2021

There is growing evidence that the changes in human behaviour resulting from the COVID-19 pandemic have had positive and negative impacts on the natural world. This study used an online survey to explore how the first UK lockdown affected human exercising behaviour, with particular focus on the role of wild and domestic animals. The survey was completed by 308 respondents. There was a significant increase in the frequency that respondents went for walks outdoors during lockdown, in comparison to pre-lockdown levels (p ≤ 0.001), and this was sustained (albeit to a lesser extent) once lockdown ended (p = 0.005). Engaging with the natural world was an important feature of walks outside for 81% of respondents. A small proportion of respondents reported physically interacting with the animals they encountered and/or feeding them, which may have implications for their welfare. The findings suggest that those who value animal encounters during their time outside always seek these interactions, while those who do not, did not tend to change this behaviour following lockdown. Should the changes in human exercising behaviour be sustained, it is important to balance the benefits of walking outdoors for human health and wellbeing with the health and welfare of the animals they encounter.
Changes in the Fecal Microbiota Associated with a Broad-Spectrum Antimicrobial Administration in Hospitalized Neonatal Foals with Probiotics Supplementation
Authors: Freccero Francesca , Lanci Aliai , Mariella Jole , Viciani Elisa , Quercia Sara , Castagnetti Andrea , Castagnetti Carolina
Published: August 2021

There is a wide array of evidence across species that exposure to antibiotics is associated with dysbiosis, and due to their widespread use, this also raises concerns also in medicine. The study aimed to determine the changes on the fecal microbiota in hospitalized neonatal foals administered with broad-spectrum antimicrobials and supplemented probiotics. Fecal samples were collected at hospital admission (Ta), at the end of the antimicrobial treatment (Te) and at discharge (Td). Feces were analysed by next-generation sequencing of the 16S rRNA gene on Illumina MiSeq. Seven foals treated with IV ampicillin and amikacin/gentamicin were included. The mean age at Ta was 19 h, the mean treatment length was 7 days and the mean time between Te and Td was 4.3 days. Seven phyla were identified: Actinobacteria, Bacteroidetes, Firmicutes, Fusobacteria, Proteobacteria, TM7 and Verrucomicrobia. At Ta, Firmicutes (48.19%) and Proteobacteria (31.56%) were dominant. The alpha diversity decreased from Ta to Te, but it was the highest at Td. The beta diversity was higher at Ta than at Te and higher at Td than at Te. An increase in Akkermansia over time was detected. The results suggest that the intestinal microbiota of neonatal foals rapidly returns to a high diversity after treatment. It is possible that in foals, the effect of antimicrobials is strongly influenced or overshadowed by the time-dependent changes in the developing gut microbiota.
Pathological Manifestations of Francisella orientalis in the Green Texas Cichlid (Herichthys cyanoguttatus)
Authors: Chang Chia-Hsuan , Poudyal Sayuj , Pulpipat Theeraporn , Wang Pei-Chi , Chen Shih-Chu
Published: August 2021

Francisella orientalis (Fo) is considered to be one of the major pathogens of tilapia because of the high mortalities observed during outbreaks. Other cichlids belonging to the same family (Cichlidae) as tilapia are also quite susceptible to this pathogen. On various occasions, Fo has also been isolated from other warm water fish, including three-line grunt, hybrid striped bass, French grunt, Caesar grunt, and Indo-Pacific reef fish. However, only a few studies have reported the pathogenicity of Francisella orientalis in ornamental cichlid fish. This study fulfills Koch’s postulates by showing that a strain of Fo obtained from green Texas cichlid (Herichthys cyanoguttatus) was able to produce the same pathogenicity in healthy fish. A mortality of 100% was observed after healthy green Texas cichlid were experimentally injected with Fo at a dose of 8.95 × 105 CFU/fish. DNA extracted from the organs of predilection (spleen, head kidney) gave positive results by PCR for all fish that died during the experimental period. Spleen and head kidney presented with multifocal white nodules in the affected fish, corresponding to typical vacuolated granulomas on histopathological examination of the tissues. Based on the results of this study, it is evident that Fo can indeed infect green Texas cichlid and produce a disease typical of francisellosis.
Optimal Replacement of Soybean Meal with Fermented Palm Kernel Meal as Protein Source in a Fish Meal-Soybean Meal-Based Diet of Sex Reversed Red Tilapia (Oreochromis niloticus × O. mossambicus)
Authors: Wattanakul Wattana , Thongprajukaew Karun , Hahor Waraporn , Suanyuk Naraid
Published: August 2021

The solid-state fermentation by effective microorganisms (containing photosynthetic bacteria, lactic acid bacteria, nitrogen-fixing bacteria, yeast and Bacillus sp.) improved the nutritive values of palm kernel meal (PKM). Increased crude protein (20.79%), nitrogen-free extract (40.07%) and gross energy (19.58%) were observed in fermented PKM (FPKM) relative to raw PKM while crude lipid (15.65%), crude fiber (36.45%) and ash (29.54%) were decreased. Replacement of soybean meal (SBM) with FPKM as a protein source was investigated for its effects in sex-reversed red tilapia (Oreochromis niloticus × O. mossambicus). The two-month-old fish (14.85 ± 0.28 g initial weight) were fed fish meal-SBM-based diets with replacement by FPKM at 25% (25FPKM), 50% (50FPKM), 75% (75FPKM) and 100% (100FPKM), while an FPKM-free diet (0FPKM) was used as a control. The five treatments, comprising triplicate cement ponds and forty fish each, were conducted in a recirculating system over 12 weeks. At the end of the feeding trial, fish fed the 50FPKM diet were superior in growth performance, while the feed utilization parameters were similar across all five treatments. Physiological adaptation of the protein-digesting (pepsin and trypsin) and lipid-digesting (lipase) enzymes was detected at all protein replacement levels (except for 25FPKM), as well as of the enzyme for cellulose digestion (cellulase), but not of the carbohydrate-digesting enzymes (amylase). Protein synthesis capacity in flesh was improved in fish fed the 50FPKM diet, while the quality of the main flesh proteins, actin and myosin, showed no significant differences across the five treatments. No differences in carcass composition and no negative effects on hematological parameters or liver histoarchitecture at the 50% replacement level of SBM by FPKM also support this alternative. Findings from the current study indicate the low-cost FPKM-containing diet for tilapia in comparison with control diet.
Sewage Sludge Derived Materials for CO2 Adsorption
Authors: Miricioiu Marius Gheorghe , Zaharioiu Anca , Oancea Simona , Bucura Felicia , Raboaca Maria Simona , Filote Constantin , Ionete Roxana Elena , Niculescu Violeta Carolina , Constantinescu Marius
Published: August 2021

The study tried to contribute to solving two serious environmental issues: CO2 reducing and sewage sludge disposal. Thus, sewage-sludge-derived materials were obtained in order to be evaluated for CO2 adsorption capacity. Therefore, the char resulted after the sewage sludge pyrolysis was subjected to oxidation and chemical activation processes by using different quantities of alkaline hydroxide. One of the obtained materials, activated with a lower quantity of alkaline hydroxide, was also treated with acid chloride. Further, the materials were structural and texturally characterized, and material treated with acid chloride was used for CO2 adsorption tests, due to high surface area and pore volume. The handmade system coupled to a gas chromatograph allowed the adsorption efficiency evaluation using different feed gases (rich and poor in CO2) by completed purge of pipe line and on-line check. Additionally, the adsorption capacity, separation efficiency, and CO2 recovery were calculated. Taking into account the values for adsorption capacity (separation efficiency and CO2 recovery), it can be concluded that the sewage sludge derived material could be a promising solution for CO2 reduction and waste disposal.
Balancing the Leakage Currents in Nanometer CMOS Logic—A Challenging Goal
Authors: Fadaeinia Bijan , Moos Thorben , Moradi Amir
Published: August 2021

The imbalance of the currents leaked by CMOS standard cells when different logic values are applied to their inputs can be exploited as a side channel to recover the secrets of cryptographic implementations. Traditional side-channel countermeasures, primarily designed to thwart the dynamic leakage behavior, were shown to be much less powerful against this static threat. Thus, a special protection mechanism called Balanced Static Power Logic (BSPL) has been proposed very recently. Essentially, fundamental standard cells are re-designed to balance their drain-source leakage current independent of the given input. In this work, we analyze the BSPL concept in more detail and reveal several design issues that limit its effectiveness as a universal logic library. Although balancing drain-source currents remains a valid approach even in more advanced technology generations, we show that it is conceptually insufficient to achieve a fully data-independent leakage behavior in smaller geometries. Instead, we suggest an alternative approach, so-called improved BSPL (iBSPL). To evaluate the proposed method, we use information theoretic analysis. As an attack strategy, we have chosen Moments-Correlating DPA (MCDPA), since this analysis technique does not depend on a particular leakage model and allows a fair comparison. Through these evaluation methods, we show iBSPL demands fewer resources and delivers better balance in the ideal case as well as in the presence of process variations.
Influence of Angiopoietin Treatment with Hypoxia and Normoxia on Human Intervertebral Disc Progenitor Cell’s Proliferation, Metabolic Activity, and Phenotype
Authors: Bischof Muriel C. , Häckel Sonja , Oberli Andrea , Croft Andreas S. , Oswald Katharina A. C. , Albers Christoph E. , Gantenbein Benjamin , Guerrero Julien
Published: August 2021

Increasing evidence implicates intervertebral disc (IVD) degeneration as a major contributor to low back pain. In addition to a series of pathogenic processes, degenerated IVDs become vascularized in contrast to healthy IVDs. In this context, angiopoietin (Ang) plays a crucial role and is involved in cytokine recruitment, and anabolic and catabolic reactions within the extracellular matrix (ECM). Over the last decade, a progenitor cell population has been described in the nucleus pulposus (NP) of the IVD to be positive for the Tie2 marker (also known as Ang-1 receptor). In this study, we investigated the influence of Ang-1 and Ang-2 on human NP cell (Tie2+, Tie2− or mixed) populations isolated from trauma patients during 7 days in normoxia (21% O2) or hypoxia (≤5% O2). At the end of the process, the proliferation and metabolic activity of the NP cells were analyzed. Additionally, the relative gene expression of NP-related markers was evaluated. NP cells showed a higher proliferation depending on the Ang treatment. Moreover, the study revealed higher NP cell metabolism when cultured in hypoxia. Additionally, the relative gene expression followed, with an increase linked to the oxygen level and Ang concentration. Our study comparing different NP cell populations may be the start of new approaches for the treatment of IVD degeneration.
The Evaluation of Historic Building Energy Retrofit Projects through the Life Cycle Assessment
Authors: Angrisano Mariarosaria , Fabbrocino Francesco , Iodice Paola , Girard Luigi Fusco
Published: August 2021

The built environment sector is one of the main sources of greenhouse gas emissions and resource depletion that contributes to the climate change crisis. The European Commission, in the “Green New Deal”, highlights that the sustainable regeneration/requalification of existing buildings plays a fundamental role to maximize the objective of decarbonization and resource conservation for 2050. The aim of this study was to understand how historic buildings’ energy retrofit projects can contribute to achieve this goal. In this study, we made a life cycle assessment to evaluate an energy retrofit project of Villa Vannucchi, an historic building located in San Giorgio a Cremano (Naples). The results of this application showed that the use of hemp material, for walls’ thermal insulation, significantly reduces the percentage of environmental impacts in the entire material life cycle (compared with traditional materials). This was because the plant removes a significant percentage of CO2 already from the atmosphere when it is growing. In conclusion, the assessment of different design scenarios that promote the use of innovative technologies and materials can be of high utility to designers to compare and choose efficient solutions for the sustainable/circular renovation of historic buildings.
Cartilage Repair Activity during Joint-Preserving Treatment May Be Accompanied by Osteophyte Formation
Authors: Jansen Mylène P. , Mastbergen Simon C. , Watt Fiona E. , Willemse Elske J. , Vincent Tonia L. , Spruijt Sander , Emans Pieter J. , Custers Roel J. H. , van Heerwaarden Ronald J. , Lafeber Floris P. J. G.
Published: August 2021

Knee joint distraction (KJD) treatment has shown cartilage repair and clinical improvement in patients with osteoarthritis, as has high tibial osteotomy (HTO). Following KJD, TGFβ-1 and IL-6 were increased in synovial fluid (SF), factors related to cartilage regeneration, but also to osteophyte formation. As such, osteophyte formation after both joint-preserving treatments was studied. Radiographic osteophyte size was measured before, one year, and two years after treatment. Changes were compared with natural progression in patients from the CHECK cohort before undergoing total knee arthroplasty. An additional KJD cohort underwent SF aspiration, and one-year Altman osteophyte score changes were compared to SF-marker changes during treatment. After two years, both KJD (n = 58) and HTO (n = 38) patients showed an increase in osteophyte size (+6.2 mm2 and +7.0 mm2 resp.; both p < 0.004), with no significant differences between treatments (p = 0.592). Untreated CHECK patients (n = 44) did not show significant two-year changes (+2.1 mm2; p = 0.207) and showed significant differences with KJD and HTO (both p < 0.044). In SF aspiration patients (n = 17), there were significant differences in TGFβ-1 changes (p = 0.044), but not IL-6 (p = 0.898), between patients with a decrease, no change, or increase in osteophyte Altman score. Since KJD and HTO showed joint space widening and clinical improvement accompanied by osteophyte formation, increased osteophytosis after joint-preserving treatments may be a bystander effect of cartilage repair activity related to intra-articular factors like TGFβ-1 and raises questions regarding osteophyte formation as solely characteristic of the joint degenerative process.
Theories and Analysis of Functionally Graded Beams
Authors: Reddy J. N. , Ruocco Eugenio , Loya Jose A. , Neves Ana M. A.
Published: August 2021

This is a review paper containing the governing equations and analytical solutions of the classical and shear deformation theories of functionally graded straight beams. The classical, first-order, and third-order shear deformation theories account for through-thickness variation of two-constituent functionally graded material, modified couple stress (i.e., strain gradient), and the von Kármán nonlinearity. Analytical solutions for bending of the linear theories, some of which are not readily available in the literature, are included to show the influence of the material variation, boundary conditions, and loads.
Prediction of Dynamic Responses of Flow-Induced Vibration Using Deep Learning
Authors: Kim Gi-yong , Lim Chaeog , Kim Eun Soo , Shin Sung-chul
Published: August 2021

Flow-induced vibration (FIV) is a phenomenon in which the flow passing through a structure exerts periodic forces on the structure. Most studies on FIVs focus on suppressing this phenomenon. However, the Marine Renewable Energy Laboratory (MRELab) at the University of Michigan, USA, has developed a technology called the vortex-induced vibration for aquatic clean energy (VIVACE) converters that reinforces FIV and converts the energy in tidal currents to electrical energy. This study introduces the experimental data of the VIVACE converter and the associated method using deep neural networks (DNNs) to predict the dynamic responses of the converter. The DNN was trained and verified with experimental data from the MRELab, and the findings show that the amplitudes and frequencies of a single cylinder in the FIV predicted by the DNN under various test conditions were in good agreement with the experimental data. Finally, based on both the predicted and experimental data, the optimal power envelope of the VIVACE converter was generated as a function of the flow speed. The predictions using DNNs are expected to be more accurate as they can be trained with more experimental data in the future and will help to substantially reduce the number of experiments on FIVs.
Flow Control Techniques for Enhancing the Bio-Recognition Performance of Microfluidic-Integrated Biosensors
Authors: Shahbazi Fatemeh , Souri Mohammad , Jabbari Masoud , Keshmiri Amir
Published: August 2021

Biosensors are favored devices for the fast and cost-effective detection of biological species without the need for laboratories. Microfluidic integration with biosensors has advanced their capabilities in selectivity, sensitivity, controllability, and conducting multiple binding assays simultaneously. Despite all the improvements, their design and fabrication are still challenging and time-consuming. The current study aims to enhance microfluidic-integrated biosensors’ performance. Three different functional designs are presented with both active (with the help of electroosmotic flow) and passive (geometry optimization) methods. For validation and further studies, these solutions are applied to an experimental setup for DNA hybridization. The numerical results for the original case have been validated with the experimental data from previous literature. Convection, diffusion, migration, and hybridization of DNA strands during the hybridization process have been simulated with finite element method (FEM) in 3D. Based on the results, increasing the velocity on top of the functionalized surface, by reducing the thickness of the microchamber in that area, would increase the speed of surface coverage by up to 62%. An active flow control with the help of electric field would increase this speed by 32%. In addition, other essential parameters in the fabrication of the microchamber, such as changes in pressure and bulk concentration, have been studied. The suggested designs are simple, applicable and cost-effective, and would not add extra challenges to the fabrication process. Overall, the effect of the geometry of the microchamber on the time and effectiveness of biosensors is inevitable. More studies on the geometry optimization of the microchamber and position of the electrodes using machine learning methods would be beneficial in future works.
Mechanical Performance Enhancement of Aluminum Single-Lap Adhesive Joints Due to Organized Alumina Nanotubes Layer Formation on the Aluminum Adherends
Authors: Papanicolaou George C. , Kontaxis Lykourgos C. , Portan Diana V. , Petropoulos Grigoris N. , Valeriou Eleni , Alexandropoulos Dimitris
Published: August 2021

The present investigation aims to take a step forward for the transfer of a simple laboratory electrochemical method of surface nano-treatment of aluminum to industrial applications. The electrochemical method has been applied to process 1050A aluminum. Surface nano-structuring has been achieved and resulted in the formation of an organized alumina nanotubes layer on commercial aluminum plates used as adherends for the manufacturing of aluminum single-lap adhesive joints. The mechanical properties of single-lap aluminum adhesive joints constructed with both non-anodized and anodized adherends were investigated and compared. Two types of epoxy resins were used to prove that the anodization of the adherends is equally effective, independently of the adhesives’ type. Furthermore, three overlap lengths were used (7, 10, and 25 mm) to study the effect of the overlap length on the overall joint mechanical response. Results of both three-point bending and tensile–shear testing showed that there is a considerable improvement of the joints’ mechanical performance with the addition of the nanostructures, for all the overlap lengths. It was found that the anodization method greatly contributes to the strengthening of the joints, leading to a strength increase of up to 176% and 148% for the shear and three-point bending strength, respectively.
Investigation of Anti-Tumor Effects of an MLK1 Inhibitor in Prostate and Pancreatic Cancers
Authors: Fan Yu-Ching , Hsu Kai-Cheng , Lin Tony-Eight , Zechner Dietmar , Hsu Sung-Po , Tsai Yuan-Chin
Published: August 2021

It was shown that mixed lineage kinase 1 (MLK1) regulates pancreatic cancer growth; however, its role in prostate cancer remains unclear. We showed that MLK1 is a tumor marker in prostate cancer by analyzing clinical gene expression data and identified a novel MLK1 inhibitor (NSC14465) from the compound library of the National Cancer Institute (NCI) using a MLK1 protein structure. The inhibitory effects of MLK1 were validated by an in vitro kinase assay and by monitoring phosphorylation signaling, and the anti-proliferation function was shown in several prostate and pancreatic cancer cell lines. We also demonstrated anti-tumor ability and prevention of cancer-related weight loss in a syngeneic orthotopic mouse model of pancreatic cancer that mimicked the tumor growth environment in the pancreas. Our results demonstrate that the MLK1 inhibitor is an anti-tumor agent for malignant prostate and pancreatic cancers.
Synthesis, Structural Investigations, Molecular Docking, and Anticancer Activity of Some Novel Schiff Bases and Their Uranyl Complexes
Authors: Howsaui Hanan B. , Basaleh Amal S. , Abdellattif Magda H. , Hassan Walid M. I. , Hussien Mostafa A.
Published: August 2021

Three novel 2-aminopyrazine Schiff bases derived from salicylaldehyde derivatives and their uranyl complexes were synthesized and characterized by elemental analysis, UV-vis, FTIR, molar conductance, and thermal gravimetric analysis (TGA). The proposed structures were optimized using density functional theory (DFT/B3LYP) and 6–311G ∗(d,p) basis sets. All uranyl complexes are soluble in DMSO and have low molar conductance, which indicates that all the complexes are nonelectrolytes. The DNA binding of those Schiff bases and their uranyl complexes was studied using UV-vis spectroscopy, and screening of their ability to bind to calf thymus DNA (CT-DNA) showed that the complexes interact with CT-DNA through an intercalation mode, for which the Kb values ranged from 1 × 106 to 3.33 × 105 M−1. The anticancer activities of the Schiff base ligands and their uranyl complexes against two ovarian (Ovcar-3) and melanoma cell lines (M14) were investigated, and the results indicated that uranyl complexes exhibit better results than the Schiff base ligands. Molecular docking identified the distance, energy account, type, and position of links contributing to the interactions between these complexes and two different cancer proteins (3W2S and 2OPZ).
High Mobility Group Box 1 in Pig Amniotic Membrane Experimentally Infected with E. coli O55
Authors: Splichal Igor , Splichalova Alla
Published: August 2021

Intra-amniotic infections (IAI) are one of the reasons for preterm birth. High mobility group box 1 (HMGB1) is a nuclear protein with various physiological functions, including tissue healing. Its excessive extracellular release potentiates inflammatory reaction and can revert its action from beneficial to detrimental. We infected the amniotic fluid of a pig on the 80th day of gestation with 1 × 104 colony forming units (CFUs) of E. coli O55 for 10 h, and evaluated the appearance of HMGB1, receptor for glycation endproducts (RAGE), and Toll-like receptor (TLR) 4 in the amniotic membrane and fluid. Sham-infected amniotic fluid served as a control. The expression and release of HMGB1 were evaluated by Real-Time PCR, immunofluorescence, immunohistochemistry, and ELISA. The infection downregulated HMGB1 mRNA expression in the amniotic membrane, changed the distribution of HMGB1 protein in the amniotic membrane, and increased its level in amniotic fluid. All RAGE mRNA, protein expression in the amniotic membrane, and soluble RAGE level in the amniotic fluid were downregulated. TLR4 mRNA and protein expression and soluble TLR4 were all upregulated. HMGB1 is a potential target for therapy to suppress the exaggerated inflammatory response. This controlled expression and release can, in some cases, prevent the preterm birth of vulnerable infants. Studies on suitable animal models can contribute to the development of appropriate therapy.
Effect of Immersive Virtual Reality-Based Bilateral Arm Training in Patients with Chronic Stroke
Authors: Song Yo-Han , Lee Hyun-Min
Published: August 2021

Virtual reality (VR)-based therapies are widely used in stroke rehabilitation. Although various studies have used VR techniques for bilateral upper limb training, most have been only semi-immersive and have only been performed in an artificial environment. This study developed VR content and protocols based on activities of daily living to provide immersive VR-based bilateral arm training (VRBAT) for upper limb rehabilitation in stroke patients. Twelve patients with chronic stroke were randomized to a VRBAT group or a normal bilateral arm training (NBAT) group and attended 30-min training sessions five times a week for four weeks. At the end of the training, there was a significant difference in upper limb function in both groups (p < 0.05) and in the upper limb function sensory test for proprioception in the NBAT group (p < 0.05). There was no significant between-group difference in upper limb muscle activity after training. The relative alpha and beta power values for electroencephalographic measurements were significantly improved in both groups. These findings indicate that both VRBAT and NBAT are effective interventions for improving upper limb function and electroencephalographic activity in patients with chronic stroke.
Effect of Neoadjuvant Therapies on Soft Tissue Sarcomas with Tail-like Lesions: A Multicenter Retrospective Study
Authors: Aiba Hisaki , Ikuta Kunihiro , Asanuma Kunihiro , Kawanami Katsuhisa , Tsukushi Satoshi , Matsumine Akihiko , Ishimura Daisuke , Nagano Akihito , Shido Yoji , Kozawa Eiji , Yamada Kenji , Wasa Junji , Kimura Hiroaki , Sakai Takao , Murakami Hideki , Sakai Tomohisa , Nakamura Tomoki , Nishida Yoshihiro
Published: August 2021

Several types of soft tissue sarcomas have peripheral infiltrative growth characteristics called tail-like lesions. The efficacy of neoadjuvant therapy for tumors with tail-like lesions has not been elucidated. From 2012 to 2019, we analyzed 36 patients with soft tissue sarcoma with tail-like lesions treated with neoadjuvant therapy, including chemotherapy, radiotherapy, or both. The effect of neoadjuvant therapy on the tail sign was investigated by analyzing the change in tail-like lesions during neoadjuvant therapy and histological responses. The median length of the tail-like lesion reduced from 29.5 mm at initiation to 19.5 mm after neoadjuvant therapy. The extent of shrinkage in tail-like lesions was related to the histopathological responses in the main part of the tumor. Complete disappearance of the tail-like lesion was observed in 12 patients; however, it was not related to achieving a microscopically negative margin. The oncologic outcomes did not significantly differ between cases with and without the complete disappearance of tail-like lesions. This study indicated that the shrinkage of tail-like lesions did not have a significant effect on complete resection or improvements of clinical outcomes. A more comprehensive evaluation is needed to elaborate on the surgical strategy.
An Overview on the Histogenesis and Morphogenesis of Salivary Gland Neoplasms and Evolving Diagnostic Approaches
Authors: Iyer Janaki , Hariharan Arvind , Cao Uyen Minh Nha , Mai Crystal To Tam , Wang Athena , Khayambashi Parisa , Nguyen Bich Hong , Safi Lydia , Tran Simon D.
Published: August 2021

Salivary gland neoplasms (SGN) remain a diagnostic dilemma due to their heterogenic complex behavior. Their diverse histomorphological appearance is attributed to the underlying cellular mechanisms and differentiation into various histopathological subtypes with overlapping fea-tures. Diagnostic tools such as fine needle aspiration biopsy, computerized tomography, magnetic resonance imaging, and positron emission tomography help evaluate the structure and assess the staging of SGN. Advances in molecular pathology have uncovered genetic patterns and oncogenes by immunohistochemistry, fluorescent in situ hybridization, and next–generation sequencing, that may potentially contribute to innovating diagnostic approaches in identifying various SGN. Surgical resection is the principal treatment for most SGN. Other modalities such as radiotherapy, chemotherapy, targeted therapy (agents like tyrosine kinase inhibitors, monoclonal antibodies, and proteasome inhibitors), and potential hormone therapy may be applied, depending on the clinical behaviors, histopathologic grading, tumor stage and location, and the extent of tissue invasion. This review delves into the molecular pathways of salivary gland tumorigenesis, highlighting recent diagnostic protocols that may facilitate the identification and management of SGN.
Ab Initio Studies of Bimetallic-Doped {0001} Hematite Surface for Enhanced Photoelectrochemical Water Splitting
Authors: Simfukwe Joseph , Mapasha Refilwe Edwin , Braun Artur , Diale Mmantsae
Published: August 2021

First-principles calculations based on density functional theory (DFT) were carried out to study the energetic stability and electronic properties of a bimetallic-doped α-Fe2O3 photoanode surface with (Zn, Ti) and (Zn, Zr) pairs for enhanced PEC water splitting. The doped systems showed negative formation energies under both O-rich and Fe-rich conditions which make them thermodynamically stable and possible to be synthesised. It is found that in a bimetallic (Zn, Ti)-doped system, at a doping concentration of 4.20% of Ti, the bandgap decreases from 2.1 eV to 1.80 eV without the formation of impurity states in the bandgap. This is favourable for increased photon absorption and efficient movement of charges from the valance band maximum (VBM) to the conduction band minimum (CBM). In addition, the CBM becomes wavy and delocalised, suggesting a decrease in the charge carrier mass, enabling electron–holes to successfully diffuse to the surface, where they are needed for water oxidation. Interestingly, with single doping of Zr at the third layer (L3) of Fe atoms of the {0001} α-Fe2O3 surface, impurity levels do not appear in the bandgap, at both concentrations of 2.10% and 4.20%. Furthermore, at 2.10% doping concentration of α-Fe2O3 with Zr, CBM becomes delocalised, suggesting improved carrier mobility, while the bandgap is altered from 2.1 eV to 1.73 eV, allowing more light absorption in the visible region. Moreover, the photocatalytic activities of Zr-doped hematite could be improved further by codoping it with Zn because Zr is capable of increasing the conductivity of hematite by the substitution of Fe3+ with Zr4+, while Zn can foster the surface reaction and reduce quick recombination of the electron–hole pairs.
Boosting the Catalytic Performance of Co/Mg/La Catalyst for Ammonia Synthesis by Selecting a Pre-Treatment Method
Authors: Ronduda Hubert , Zybert Magdalena , Patkowski Wojciech , Ostrowski Andrzej , Jodłowski Przemysław , Szymański Damian , Kępiński Leszek , Raróg-Pilecka Wioletta
Published: August 2021

The influence of the calcination process on the physicochemical properties and catalytic behavior of the Co/Mg/La catalysts for ammonia synthesis has been investigated. The catalysts were prepared using the different thermal pre-treatment methods prior to the activation, i.e., drying and calcination, and the respective activities for ammonia synthesis were assessed. It was found out that changing from air calcination prior to activation to direct activation of the co-precipitated species led to the different catalytic performances. The most favorable catalytic performance was achieved with Co/Mg/La prepared by calcination in air. Detailed characterization methods, employing e.g., XRPD, H2-TPD, N2-TPD, CO2-TPD, SEM, and TEM, showed that the superior catalytic behavior of this catalyst was attributed to its strong basicity and favorable adsorption properties toward hydrogen and nitrogen.
Development of Tg(UAS:SEC-Hsa.ANXA5-YFP,myl7:RFP); Casper(roy−/−,nacre−/−) Transparent Transgenic In Vivo Zebrafish Model to Study the Cardiomyocyte Function
Authors: Rajpurohit Surendra K. , Gopal Aaron , Mon May Ye , Patel Nikhil G. , Arora Vishal
Published: August 2021

The zebrafish provided an excellent platform to study the genetic and molecular approach of cellular phenotype-based cardiac research. We designed a novel protocol to develop the transparent transgenic zebrafish model to study annexin-5 activity in the cardiovascular function by generating homozygous transparent skin Casper(roy−/−,nacre−/−); myl7:RFP; annexin-5:YFP transgenic zebrafish. The skin pigmentation background of any vertebrate model organism is a major obstruction for in vivo confocal imaging to study the transgenic cellular phenotype-based study. By developing Casper(roy−/−,nacre−/−); myl7; annexin-5 transparent transgenic zebrafish strain, we established time-lapse in vivo confocal microscopy to study cellular phenotype/pathologies of cardiomyocytes over time to quantify changes in cardiomyocyte morphology and function over time, comparing control and cardiac injury and cardio-oncology. Casper contributes to the study by integrating a transparent characteristic in adult zebrafish that allows for simpler transparent visualization and observation. The Casper(roy−/−,nacre−/−) transgenic progenies developed through cross-breeding with the transgenic strain of Tg(UAS:SEC-Hsa.ANXA5-YFP,myl7:RFP). Confocal and fluorescent microscopy were being used to obtain accurate, precise imaging and to determine fluorescent protein being activated. This study protocol was conducted under two sections; 1.1: Generation of homozygous Tg(UAS:SEC-Hsa.ANXA5-YFP,myl7:RFP); Casper(roy−/−,nacre−/−) zebrafish (generation F01-F06) and 1.2: Screening and sorting the transparent transgenic progeny and in vivo imaging to validate cardiac morphology through in vivo confocal imaging. We coined the newly developed strain as Tg(UAS:SEC-Hsa.ANXA5-YFP,myl7:RFP); Casper(roy−/−,nacre−/−)gmc1. Thus, the newly developed strain maintains transparency of the skin throughout the entire life of zebrafish and is capable of application of a non-invasive in vivo imaging process. These novel results provide an in vivo whole organism-based platform to design high-throughput screening and establish a new horizon for drug discovery in cardiac cell death and cardio-oncology therapeutics and treatment.