bluuebunny/crossref_metadata_2025 huggingface dataset:
Plant physiological and environmental controls over the exchange of acetaldehyde between forest canopies and the atmosphere
Authors: Jardine K. , Harley P. , Karl T. , Guenther A. , Lerdau M. , Mak J. E.
Published: April 2010

Abstract. We quantified fine scale sources and sinks of gas phase acetaldehyde in two forested ecosystems in the US. During the daytime, the upper canopy behaved as a net source while at lower heights, reduced emission rates or net uptake were observed. At night, uptake generally predominated throughout the canopies. Net ecosystem emission rates were inversely related to foliar density due to the extinction of light in the canopy and a respective decrease of the acetaldehyde compensation point. This is supported by branch level studies revealing much higher compensation points in the light than in the dark for poplar (Populus deltoides) and holly oak (Quercus ilex) implying a higher light/temperature sensitivity for acetaldehyde production relative to consumption. The view of stomata as the major pathway for acetaldehyde exchange is supported by strong linear correlations between branch transpiration rates and acetaldehyde exchange velocities for both species. In addition, natural abundance carbon isotope analysis of gas-phase acetaldehyde during poplar branch fumigation experiments revealed a significant kinetic isotope effect of 5.1±0.3‰ associated with the uptake of acetaldehyde. Similar experiments with dry dead poplar leaves showed no fractionation or uptake of acetaldehyde, confirming that this is only a property of living leaves. We suggest that acetaldehyde belongs to a potentially large list of plant metabolites where stomatal resistance can exert long term control over both emission and uptake rates due to the presence of both source(s) and sink(s) within the leaf which strongly buffer large changes in concentrations in the substomatal airspace due to changes in stomatal resistance. We conclude that the exchange of acetaldehyde between plant canopies and the atmosphere is fundamentally controlled by ambient acetaldehyde concentrations, stomatal resistance, and the compensation point which is a function of light/temperature.
Heterotrophic bacterial production in the eastern South Pacific: longitudinal trends and coupling with primary production
Authors: Van Wambeke F. , Obernosterer I. , Moutin T. , Duhamel S. , Ulloa O. , Claustre H.
Published: April 2010

Abstract. Spatial variation of heterotrophic bacterial production and phytoplankton primary production were investigated across the eastern South Pacific Ocean (−141° W, −8° S to −72° W, −35° S) in November–December 2004. Bacterial production (3H leucine incorporation) integrated over the euphotic zone encompassed a wide range of values, from 43 mg C m−2 d−1 in the hyper-oligotrophic South Pacific Gyre to 392 mg C m−2 d−1 in the upwelling off Chile. In the gyre (120° W, 22° S) records of low phytoplankton biomass (7 mg Total Chla m−2) were obtained and fluxes of in situ 14C-based particulate primary production were as low as 153 mg C m−2 d−1, thus equal to the value considered as a limit for primary production under strong oligotrophic conditions. Average rates of 3H leucine incorporation rates, and leucine incorporation rates per cell (5–21 pmol l−1 h−1 and 15–56×10−21 mol cell−1 h−1, respectively) determined in the South Pacific gyre, were in the same range as those reported for other oligotrophic subtropical and temperate waters. Fluxes of dark community respiration, determined at selected stations across the transect varied in a narrow range (42–97 mmol O2 m−2 d−1), except for one station in the upwelling off Chile (245 mmol O2 m−2 d−1). Bacterial growth efficiencies varied between 5 and 38%. Bacterial carbon demand largely exceeded 14C particulate primary production across the South Pacific Ocean, but was lower or equal to gross community production.
Anthropogenic and biophysical contributions to increasing atmospheric CO2 growth rate and airborne fraction
Authors: Raupach M. R. , Canadell J. G. , Le Quéré C.
Published: April 2010

Abstract. We quantify the relative roles of natural and anthropogenic influences on the growth rate of atmospheric CO2 and the CO2 airborne fraction, considering both interdecadal trends and interannual variability. A combined ENSO-Volcanic Index (EVI) relates most (~75%) of the interannual variability in CO2 growth rate to the El-Niño-Southern-Oscillation (ENSO) climate mode and volcanic activity. Analysis of several CO2 data sets with removal of the EVI-correlated component confirms a previous finding of a detectable increasing trend in CO2 airborne fraction (defined using total anthropogenic emissions including fossil fuels and land use change) over the period 1959–2006, at a proportional growth rate 0.24% y−1 with probability ~0.9 of a positive trend. This implies that the atmospheric CO2 growth rate increased slightly faster than total anthropogenic CO2 emissions. To assess the combined roles of the biophysical and anthropogenic drivers of atmospheric CO2 growth, the increase in the CO2 growth rate (1.9% y−1 over 1959–2006) is expressed as the sum of the growth rates of four global driving factors: population (contributing +1.7% y−1); per capita income (+1.8% y−1); the total carbon intensity of the global economy (−1.7% y−1); and airborne fraction (averaging +0.2% y−1 with strong interannual variability). The first three of these factors, the anthropogenic drivers, have therefore dominated the last, biophysical driver as contributors to accelerating CO2 growth. Together, the recent (post-2000) increase in growth of per capita income and decline in the negative growth (improvement) in the carbon intensity of the economy will drive a significant further acceleration in the CO2 growth rate over coming decades, unless these recent trends reverse.
Particulate organic carbon (POC) in relation to other pore water carbon fractions in drained and rewetted fens in Southern Germany
Authors: Fiedler S. , Höll B. S. , Freibauer A. , Stahr K. , Drösler M. , Schloter M. , Jungkunst H. F.
Published: April 2010

Abstract. Numerous studies have dealt with carbon (C) contents in Histosols, but there are no studies quantifying the relative importance of the individual C components in pore waters. For this study, measurements were taken of all the carbon components (particulate organic carbon, POC; dissolved organic carbon, DOC; dissolved inorganic carbon, DIC; dissolved methane, CH4) in the soil pore water of calcareous fens under three different water management regimes (re-wetted, deeply and moderately drained). Pore water was collected weekly or biweekly (April 2004 to April 2006) at depths between 10 and 150 cm. The main results obtained were: (1) DIC (94–280 mg C l−1) was the main C-component. (2) POC and DOC concentrations in the pore water (14–125 mg C l−1 vs. 41–95 mg C l−1) were pari passu. (3) Dissolved CH4 was the smallest C component (0.005–0.9 mg C l−1). Interestingly, about 30% of the POM particles were colonized by microbes indicating that they are active in the internal C turnover. Certainly, both POC and DOC fractions are essential components of the C budget of peatlands. Furthermore, dissolved CO2 in all forms of DIC appears to be an important part of peatland C-balance.
Evidence for a multi-species coccolith volume change over the past two centuries: understanding a potential ocean acidification response
Authors: Halloran P. R. , Hall I. R. , Colmenero-Hidalgo E. , Rickaby R. E. M.
Published: April 2010

Abstract. Major questions surround the species-specific nature of coccolithophore calcification in response to rising atmospheric CO2 levels. Here we present CaCO3 particle volume distribution data from the coccolith size-fraction of a rapidly accumulating North Atlantic sediment core. Without direct volume measurements on coccoliths produced by individual coccolithophore species, and knowledge of organic, as well as inorganic carbon production, it is not possible to state conclusively the coccolithophore calcification change at this site. However, by analysing the size distribution of CaCO3 particles in the less than 10 μm sediment fraction, we demonstrate a changing particle volume since the late 20th Century consistent with an increase in the mass of coccoliths produced by the larger coccolithophore species, and potentially a decrease in mass of coccoliths produced by the smaller species, present at this location. This finding has significant implications for the realistic representation of an assemblage-wide coccolithophore CO2-calcification response in numerical models.
Temporal variability of the anthropogenic CO2 storage in the Irminger Sea
Authors: Pérez F. F. , Vázquez-Rodríguez M. , Louarn E. , Padín X. A. , Mercier H. , Ríos A. F.
Published: April 2010

Abstract. The anthropogenic CO2 (Cant) estimates from cruises spanning more than two decades (1981–2006) in the Irminger Sea area of the North Atlantic Subpolar Gyre reveal a large variability in the Cant storage rates. During the early 1990's, the Cant storage rates (2.3±0.6 mol C m−2 yr−1) doubled the average rate for 1981–2006 (1.1±0.1 mol C m−2 yr−1), whilst a remarkable drop to almost half that average followed from 1997 onwards. The Cant storage evolution runs parallel to chlorofluorocarbon-12 inventories and is in good agreement with Cant uptake rates of increase calculated from sea surface pCO2 measurements. The contribution of the Labrador Seawater to the total inventory of Cant in the Irminger basin dropped from 66% in the early 1990s to 49% in the early 2000s. The North Atlantic Oscillation shift from a positive to a negative phase in 1996 led to a reduction of air-sea heat loss in the Labrador Sea. The consequent convection weakening accompanied by an increase in stratification has lowered the efficiency of the northern North Atlantic CO2 sink.
Influence of CH4 and H2S availability on symbiont distribution, carbon assimilation and transfer in the dual symbiotic vent mussel Bathymodiolus azoricus
Authors: Riou V. , Halary S. , Duperron S. , Bouillon S. , Elskens M. , Bettencourt R. , Santos R. S. , Dehairs F. , Colaço A.
Published: April 2010

Abstract. High densities of mussels of the genus Bathymodiolus are present at hydrothermal vents of the Mid-Atlantic Ridge. It was previously proposed that the chemistry at vent sites would affect their sulphide- and methane-oxidizing endosymbionts' abundance. In this study, we confirmed the latter assumption using fluorescence in situ hybridization on Bathymodiolus azoricus specimens maintained in a controlled laboratory environment at atmospheric pressure with one, both or none of the chemical substrates. A high level of symbiosis plasticity was observed, methane-oxidizers occupying between 4 and 39% of total bacterial area and both symbionts developing according to the presence or absence of their substrates. Using H13CO3− in the presence of sulphide, or 13CH4, we monitored carbon assimilation by the endosymbionts and its translocation to symbiont-free mussel tissues. Carbon was incorporated from methane and sulphide-oxidized inorganic carbon at rates 3 to 10 times slower in the host muscle tissue than in the symbiont-containing gill tissue. Both symbionts thus contribute actively to B. azoricus nutrition and adapt to the availability of their substrates. Further experiments with varying substrate concentrations using the same set-up should provide useful tools to study and even model the effects of changes in hydrothermal fluids on B. azoricus' chemosynthetic nutrition.
Spatial and temporal variations in dissolved and particulate organic nitrogen in the equatorial Pacific: biological and physical influences
Authors: Wang X. J. , Le Borgne R. , Murtugudde R. , Busalacchi A. J. , Behrenfeld M.
Published: April 2010

Abstract. To quote Libby and Wheeler (1997), "we have only a cursory knowledge of the distributions of dissolved and particulate organic nitrogen" in the equatorial Pacific. A decade later, we are still in need of spatial and temporal analyses of these organic nitrogen pools. To address this issue, we employ a basin scale physical-biogeochemical model to study the spatial and temporal variations of dissolved organic nitrogen (DON) and particulate organic nitrogen (PON). The model is able to reproduce many observed features of nitrate, ammonium, DON and PON in the central and eastern equatorial Pacific, including the asymmetries of nitrate and ammonium, and the meridional distributions of DON and PON. Modeled DON (5–8 mmol m−3) shows small zonal and meridional variations in the mixed layer whereas modeled PON (0.4–1.5 mmol m−3) shows considerable spatial variability. While there is a moderate seasonality in both DON and PON in the mixed layer, there is a much weaker interannual variability in DON than in PON. The interannual variability in PON is largely associated with the El Niño/Southern Oscillation (ENSO) phenomenon, showing high values during cold ENSO phase but low values during warm ENSO phase. Overall, DON and PON have significant positive correlations with phytoplankton and zooplankton in the mixed layer, indicting the biological regulation on distribution of organic nitrogen. However, the relationships with phytoplankton and zooplankton are much weaker for DON (r=0.18–0.71) than for PON (r=0.25–0.97). Such a difference is ascribed to a relatively larger degree of physical control (e.g., upwelling of low-organic-N deep waters into the surface) on DON than PON.
Bacteria in Himalayan glacial ice and its relationship to dust
Authors: Zhang S. , Hou S. , Wu Y. , Qin D.
Published: April 2010

Abstract. Concentrations and community diversity of bacteria from 50 segments of a 108.83 m ice core drilled from the East Rongbuk (ER) Glacier (28.03° N, 86.96° E, 6518 m above sea level) on the northeast slope of Mt. Qomolangma (Everest), covering the period 950–1963 AD, were investigated by epifluorescence microscope, DGGE and Shannon-Weaver index analysis. Bacteria in the ER core were identified as β, γ-proteobacteria and Firmicutes group, with γ-proteobacteria being the dominance. Different bacterial population was identified along the core, reflecting the effects of climatic and environmental changes on the bacterial distribution in the glacial ice. There are four general periods of bacterial diversity, corresponding to four phases of dust abundance revealed by Ca2+ concentrations. However, a previously suggested positive correlation between bacterial and Ca2+ concentrations was not indicated by our observations. Instead, a weak negative correlation was found between these two parameters. Our results suggest that bacterial community diversity, rather than concentrations, might be a suitable biological proxy for the reconstruction of past climatic and environmental changes preserved in glacial ice.
Short term changes in zooplankton community during the summer-autumn transition in the open NW Mediterranean Sea: species composition, abundance and diversity
Authors: Raybaud V. , Nival P. , Mousseau L. , Gubanova A. , Altukhov D. , Khvorov S. , Ibañez F. , Andersen V.
Published: April 2010

Abstract. Short term changes in zooplankton community were investigated at a fixed station in offshore waters of the Ligurian Sea (DYNAPROC 2 cruise, September–October 2004). Mesozooplankton were sampled with vertical WP-II hauls (200 μm mesh-size) and large mesozooplankton, macrozooplankton and micronekton with a BIONESS multinet sampler (500 μm mesh-size). Temporal variations of total biomass, species composition and abundance of major taxa were studied. Intrusions of low salinity water masses were observed two times during the cruise. The first one, which was the most intense, was associated with changes in zooplankton community composition. Among copepods, the abundance of Calocalanus, Euchaeta, Heterorhabdus, Mesocalanus, Nannocalanus, Neocalanus, Pleuromammaand also calanoid copepodites increased markedly. Among non-copepod taxa, only small ostracods abundance increased. After this low salinity event, abundance of all taxa nearly returned to their initial values. The influence of salinity on each zooplankton taxon was confirmed by a statistical analysis (Perry's method). The Shannon diversity index, Pielou evenness and species richness were used to describe temporal variations of large copepod (>500 μm) diversity. The Shannon index and Pielou evenness decreased at the beginning of the low salinity water intrusions, but not species richness. We suggest that low salinity water masses contained its own zooplankton community and passed through the sampling area, thus causing a replacement of the zooplankton population.
Response of carbon fluxes to water relations in a savanna ecosystem in South Africa
Authors: Kutsch W. L. , Hanan N. , Scholes B. , McHugh I. , Kubheka W. , Eckhardt H. , Williams C.
Published: April 2010

Abstract. The principal mechanisms that connect carbon fluxes with water relations in savanna ecosystems were studied by using eddy covariance method in a savanna ecosystem at Kruger National Park, South Africa. Since the annual drought and rewetting cycle is a major factor influencing the function of savanna ecosystems, this work focused on the close inter-connection between water relations and carbon fluxes. Data from a nine-month measuring campaign lasting from the early wet season to the late dry season were used. Total ecosystem respiration showed highest values at the onset of the growing season, a slightly lower plateau during the main part of the growing season and a continuous decrease during the transition towards the dry season. The regulation of canopy conductance was changed in two ways: changes due to phenology during the course of the growing season and short-term acclimation to soil water conditions. The most constant parameter was water use efficiency that was influenced by VPD during the day but the VPD response curve of water usage did change only slightly during the course of the growing season and decreased by about 30% during the transition from wet to dry season. The regulation of canopy conductance and photosynthetic capacity were closely related. This observation meets recent leaf-level findings that stomatal closure triggers down-regulation of Rubisco during drought. Our results may show the effects of these processes on the ecosystem scale.
Picoplankton diversity in the South-East Pacific Ocean from cultures
Authors: Le Gall F. , Rigaut-Jalabert F. , Marie D. , Garczarek L. , Viprey M. , Gobet A. , Vaulot D.
Published: April 2010

Abstract. In late 2004, the BIOSOPE cruise sailed between the equatorial influenced waters off the Marquesas Islands and the nutrient enriched waters of the Chilean upwelling. Along the way, it explored the Southeast Pacific gyre centred around Easter Island, which is probably the most oligotrophic oceanic region on earth. During this cruise, we undertook a vigorous effort to isolate novel photosynthetic picoplanktonic eukaryotes. Two strategies were attempted on board: enrichment of filtered samples with culture medium and sorting of specific populations by flow cytometry based on size and chlorophyll fluorescence. Over 1900 pre-cultures were started and then further purified by flow cytometry, serial dilution or pipette isolation to yield a total of 212 strains. These strains were characterized morphologically and for more than 50% of them, genetically, through partial sequencing of the 18 S rRNA gene. Among the characterized strains, the largest number belongs to stramenopiles (Heterokontophyta) with a record of 38 strains belonging to the species Pelagomonas calceolata (Pelagophyceae). Strains from the recently described genera Bolidomonas and Florenciella have been re-isolated for the first time since their description. Two other abundant groups are the Chlorophyta, especially Prasinophyceae, and the Haptophyta, especially the genera Phaeocystis and Emiliania. A limited number of heterotrophic flagellates have also been isolated, all of them belonging to groups containing known species. Finally, over a dozen of unicellular cyanobacterial Synechococcus strains have been obtained, some forming unusual short chains. Overall our strategy was quite successful since it allowed us to isolate a large number of picoplankton strains. Still it failed in two respects. First, apparently very few novel taxa have been obtained. One set of strains is related to Prasinoderma coloniale (Prasinococcales, Prasinophyceae) but their sequences are sufficiently different from the latter to probably belong to a new genus or species. The sequences of two other strains, unfortunately later lost, were phylogenetically affiliated to stramenopile environmental sequences, probably corresponding to a new algal class. Second, very few strains have been obtained from the very oligotrophic central gyre itself. In order to be successful, future work in similar waters should probably combine flow cytometry sorting with culture media and cultivation approaches specifically developed for oligotrophic water species.
Three-dimensional Magnetic Resonance Imaging of fossils across taxa
Authors: Mietchen D. , Aberhan M. , Manz B. , Hampe O. , Mohr B. , Neumann C. , Volke F.
Published: April 2010

Abstract. The frequency of life forms in the fossil record is largely determined by the extent to which they were mineralised at the time of their death. In addition to mineral structures, many fossils nonetheless contain detectable amounts of residual water or organic molecules, the analysis of which has become an integral part of current palaeontological research. The methods available for this sort of investigations, though, typically require dissolution or ionisation of the fossil sample or parts thereof, which is an issue with rare taxa and outstanding materials like pathological or type specimens. In such cases, non-destructive techniques could provide a valuable methodological alternative. While Computed Tomography has long been used to study palaeontological specimens, a number of complementary approaches have recently gained ground. These include Magnetic Resonance Imaging (MRI) which had previously been employed to obtain three-dimensional images of pathological belemnites non-invasively on the basis of intrinsic contrast. The present study was undertaken to investigate whether 1H MRI can likewise provide anatomical information about non-pathological belemnites and specimens of other fossil taxa. To this end, three-dimensional MR image series were acquired from intact non-pathological invertebrate, vertebrate and plant fossils. At routine voxel resolutions in the range of several dozens to some hundreds of micrometers, these images reveal a host of anatomical details and thus highlight the potential of MR techniques to effectively complement existing methodological approaches for palaeontological investigations in a wide range of taxa. As for the origin of the MR signal, relaxation and diffusion measurements as well as 1H and 13C MR spectra acquired from a belemnite suggest intracrystalline water or hydroxyl groups, rather than organic residues.
Evidence for efficient regenerated production and dinitrogen fixation in nitrogen-deficient waters of the South Pacific Ocean: impact on new and export production estimates
Authors: Raimbault P. , Garcia N.
Published: April 2010

Abstract. One of the major objectives of the BIOSOPE cruise, carried out on the R/V Atalante from October-November 2004 in the South Pacific Ocean, was to establish productivity rates along a zonal section traversing the oligotrophic South Pacific Gyre (SPG). These results were then compared to measurements obtained from the nutrient – replete waters in the Chilean upwelling and around the Marquesas Islands. A dual 13C/15N isotope technique was used to estimate the carbon fixation rates, inorganic nitrogen uptake (including dinitrogen fixation), ammonium (NH4) and nitrate (NO3) regeneration and release of dissolved organic nitrogen (DON). The SPG exhibited the lowest primary production rates (0.15 g C m−2 d−1), while rates were 7 to 20 times higher around the Marquesas Islands and in the Chilean upwelling, respectively. In the very low productive area of the SPG, most of the primary production was sustained by active regeneration processes that fuelled up to 95% of the biological nitrogen demand. Nitrification was active in the surface layer and often balanced the biological demand for nitrate, especially in the SPG. The percentage of nitrogen released as DON represented a large proportion of the inorganic nitrogen uptake (13–15% in average), reaching 26–41% in the SPG, where DON production played a major role in nitrogen cycling. Dinitrogen fixation was detectable over the whole study area; even in the Chilean upwelling, where rates as high as 3 nmoles l−1 d−1 were measured. In these nutrient-replete waters new production was very high (0.69±0.49 g C m−2 d−1) and essentially sustained by nitrate levels. In the SPG, dinitrogen fixation, although occurring at much lower daily rates (≈1–2 nmoles l−1 d−1), sustained up to 100% of the new production (0.008±0.007 g C m−2 d−1) which was two orders of magnitude lower than that measured in the upwelling. The annual N2-fixation of the South Pacific is estimated to 21×1012g, of which 1.34×1012g is for the SPG only. Even if our "snapshot" estimates of N2-fixation rates were lower than that expected from a recent ocean circulation model, these data confirm that the N-deficiency South Pacific Ocean would provide an ideal ecological niche for the proliferation of N2-fixers which are not yet identified.
Input and output of dissolved organic and inorganic nitrogen in subtropical forests of South China under high air pollution
Authors: Fang Y. T. , Gundersen P. , Mo J. M. , Zhu W. X.
Published: April 2010

Abstract. The nitrogen (N) emissions to the atmosphere and N deposition to forest ecosystems are increasing rapidly in Southeast Asia, but little is known about the fates and effects of elevated N deposition in forest ecosystems in this warm and humid region. Here we report the concentrations and fluxes of dissolved inorganic (DIN) and organic N (DON) in precipitation, throughfall, surface runoff and soil solution for three subtropical forests in a region of South China under high air pollution over two years (2004 and 2005), to investigate how deposited N is processed, and to examine the importance of DON in the N budget. The precipitation DIN input was 32–34 kg N ha−1 yr−1. An additional input of 18 kg N ha−1 yr−1 as DON was measured in 2005, which to our knowledge is the highest DON flux ever measured in precipitation. A canopy uptake of DIN was indicated in two young conifer dominated forests (72–85% of DIN input reached the floor in throughfall), whereas no uptake occurred in an old-growth broadleaf forest. The DON fluxes in throughfall were similar to that in precipitation in all forests. In the younger forests, DIN was further retained in the soil, with 41–63% of precipitation DIN leached below the 20-cm soil depth. Additionally, about half of the DON input was retained in these forests. The N retention in two young aggrading forests (21–28 kg N ha−1 yr−1) was in accordance with the estimates of N accumulation in biomass and litter accretion. In the old-growth forest, no N retention occurred, but rather a net loss of 8–16 kg N ha−1 yr−1 from the soil was estimated. In total up to 60 kg N ha−1 yr−1 was leached from the old-growth forest, indicating that this forest was completely N saturated and could not retain additional anthropogenic N inputs. We found that the majority of DIN deposition as well as of DIN leaching occurred in the rainy season (March to August) and that monthly DIN concentrations and fluxes in leaching were positively related to those in throughfall in all three forests, implying that part of the N leaching was hydrologically driven. Our results suggest that long-term high N deposition has caused elevated N leaching in all three forest types although most pronounced in the old-growth forest where wood increment was negligible or even negative. N availability even exceeded the biotic N demand in the young aggrading forests, with intensive rain in the growing season further enhancing N leaching in these forests.
The impact on atmospheric CO2 of iron fertilization induced changes in the ocean's biological pump
Authors: Jin X. , Gruber N. , Frenzel H. , Doney S. C. , McWilliams J. C.
Published: April 2010

Abstract. Using numerical simulations, we quantify the impact of changes in the ocean's biological pump on the air-sea balance of CO2 by fertilizing a small surface patch in the high-nutrient, low-chlorophyll region of the eastern tropical Pacific with iron. Decade-long fertilization experiments are conducted in a basin-scale, eddy-permitting coupled physical/biogeochemical/ecological model. In contrast to previous studies, we find that most of the dissolved inorganic carbon (DIC) removed from the euphotic zone by the enhanced biological export is replaced by uptake of CO2 from the atmosphere. Atmospheric uptake efficiencies, the ratio of the perturbation in air-sea CO2 flux to the perturbation in export flux across 100 m, integrated over 10 years, are 0.75 to 0.93 in our patch size-scale experiments. The atmospheric uptake efficiency is insensitive to the duration of the experiment. The primary factor controlling the atmospheric uptake efficiency is the vertical distribution of the enhanced biological production and export. Iron fertilization at the surface tends to induce production anomalies primarily near the surface, leading to high efficiencies. In contrast, mechanisms that induce deep production anomalies (e.g. altered light availability) tend to have a low uptake efficiency, since most of the removed DIC is replaced by lateral and vertical transport and mixing. Despite high atmospheric uptake efficiencies, patch-scale iron fertilization of the ocean's biological pump tends to remove little CO2 from the atmosphere over the decadal timescale considered here.
Dynamics of dimethylsulphoniopropionate and dimethylsulphide under different CO2 concentrations during a mesocosm experiment
Authors: Vogt M. , Steinke M. , Turner S. , Paulino A. , Meyerhöfer M. , Riebesell U. , LeQuéré C. , Liss P.
Published: April 2010

Abstract. The potential impact of seawater acidification on the concentrations of dimethylsulfide (DMS) and dimethylsulfoniopropionate (DMSP), and the activity of the enzyme DMSP-lyase was investigated during a pelagic ecosystem CO2 enrichment experiment (PeECE III) in spring 2005. Natural phytoplankton blooms were studied for 24 days under present, double and triple partial pressures of CO2 (pCO2; pH=8.3, 8.0, 7.8) in triplicate 25 m3 enclosures. The results indicate similar DMSP concentrations and DMSP-lyase activity (DLA) patterns for all treatments. Hence, DMSP and DLA do not seem to have been affected by the CO2 treatment. In contrast, DMS concentrations showed small but statistically significant differences in the temporal development of the low versus the high CO2 treatments. The low pCO2 enclosures had higher DMS concentrations during the first 10 days, after which the levels decreased earlier and more rapidly than in the other treatments. Integrated over the whole study period, DMS concentrations were not significantly different from those of the double and triple pCO2 treatments. Pigment and flow-cytometric data indicate that phytoplanktonic populations were generally similar between the treatments, suggesting a certain resilience of the marine ecosystem under study to the induced pH changes, which is reflected in DMSP and DLA. However, there were significant differences in bacterial community structure and the abundance of one group of viruses infecting nanoeukaryotic algae. The amount of DMS accumulated per total DMSP or chlorophyll-a differed significantly between the present and future scenarios, suggesting that the pathways for DMS production or bacterial DMS consumption were affected by seawater pH. A comparison with previous work (PeECE II) suggests that DMS concentrations do not respond consistently to pelagic ecosystem CO2 enrichment experiments.
Leaf area controls on energy partitioning of a temperate mountain grassland
Authors: Hammerle A. , Haslwanter A. , Tappeiner U. , Cernusca A. , Wohlfahrt G.
Published: April 2010

Abstract. Using a six year data set of eddy covariance flux measurements of sensible and latent heat, soil heat flux, net radiation, above-ground phytomass and meteorological driving forces energy partitioning was investigated at a temperate mountain grassland managed as a hay meadow in the Stubai Valley (Austria). The main findings of the study were: (i) Energy partitioning was dominated by latent heat, followed by sensible heat and the soil heat flux; (ii) When compared to standard environmental forcings, the amount of green plant matter, which due to three cuts varied considerably during the vegetation period, explained similar, and partially larger, fractions of the variability in energy partitioning; (iii) There were little, if any, indications of water stress effects on energy partitioning, despite reductions in soil water availability in combination with high evaporative demand, e.g. during the summer drought of 2003.
Short-term fate of phytodetritus in sediments across the Arabian Sea Oxygen Minimum Zone
Authors: Andersson J. H. , Woulds C. , Schwartz M. , Cowie G. L. , Levin L. A. , Soetaert K. , Middelburg J. J.
Published: April 2010

Abstract. The short-term fate of phytodetritus was investigated across the Pakistan margin of the Arabian Sea at water depths ranging from 140 to 1850 m, encompassing the oxygen minimum zone (~100–1100 m). Phytodetritus sedimentation events were simulated by adding ~44 mmol 13C-labelled algal material per m2 to surface sediments in retrieved cores. Cores were incubated in the dark, at in situ temperature and oxygen concentrations. Overlying waters were sampled periodically, and cores were recovered and sampled (for organisms and sediments) after durations of two and five days. The labelled carbon was subsequently traced into bacterial lipids, foraminiferan and macrofaunal biomass, and dissolved organic and inorganic pools. The majority of the label (20 to 100%) was in most cases left unprocessed in the sediment at the surface. The largest pool of processed carbon was found to be respiration (0 to 25% of added carbon), recovered as dissolved inorganic carbon. Both temperature and oxygen were found to influence the rate of respiration. Macrofaunal influence was most pronounced at the lower part of the oxygen minimum zone where it contributed 11% to the processing of phytodetritus.
Quality control of CarboEurope flux data – Part 1: Coupling footprint analyses with flux data quality assessment to evaluate sites in forest ecosystems
Authors: Göckede M. , Foken T. , Aubinet M. , Aurela M. , Banza J. , Bernhofer C. , Bonnefond J. M. , Brunet Y. , Carrara A. , Clement R. , Dellwik E. , Elbers J. , Eugster W. , Fuhrer J. , Granier A. , Grünwald T. , Heinesch B. , Janssens I. A. , Knohl A. , Koeble R. , Laurila T. , Longdoz B. , Manca G. , Marek M. , Markkanen T. , Mateus J. , Matteucci G. , Mauder M. , Migliavacca M. , Minerbi S. , Moncrieff J. , Montagnani L. , Moors E. , Ourcival J.-M. , Papale D. , Pereira J. , Pilegaard K. , Pita G. , Rambal S. , Rebmann C. , Rodrigues A. , Rotenberg E. , Sanz M. J. , Sedlak P. , Seufert G. , Siebicke L. , Soussana J. F. , Valentini R. , Vesala T. , Verbeeck H. , Yakir D.
Published: April 2010

Abstract. We applied a site evaluation approach combining Lagrangian Stochastic footprint modeling with a quality assessment approach for eddy-covariance data to 25 forested sites of the CarboEurope-IP network. The analysis addresses the spatial representativeness of the flux measurements, instrumental effects on data quality, spatial patterns in the data quality, and the performance of the coordinate rotation method. Our findings demonstrate that application of a footprint filter could strengthen the CarboEurope-IP flux database, since only one third of the sites is situated in truly homogeneous terrain. Almost half of the sites experience a significant reduction in eddy-covariance data quality under certain conditions, though these effects are mostly constricted to a small portion of the dataset. Reductions in data quality of the sensible heat flux are mostly induced by characteristics of the surrounding terrain, while the latent heat flux is subject to instrumentation-related problems. The Planar-Fit coordinate rotation proved to be a reliable tool for the majority of the sites using only a single set of rotation angles. Overall, we found a high average data quality for the CarboEurope-IP network, with good representativeness of the measurement data for the specified target land cover types.
Quality control of CarboEurope flux data – Part 2: Inter-comparison of eddy-covariance software
Authors: Mauder M. , Foken T. , Clement R. , Elbers J. A. , Eugster W. , Grünwald T. , Heusinkveld B. , Kolle O.
Published: April 2010

Abstract. As part of the quality assurance and quality control activities within the CarboEurope-IP network, a comparison of eddy-covariance software was conducted. For four five-day datasets, CO2 flux estimates were calculated by seven commonly used software packages to assess the uncertainty of CO2 flux estimates due to differences in post-processing. The datasets originated from different sites representing different commonly applied instrumentation and different canopy structures to cover a wide range of realistic conditions. Data preparation, coordinate rotation and the implementation of the correction for high frequency spectral losses were identified as crucial processing steps leading to significant discrepancies in the CO2 flux results. The overall comparison indicated a good although not yet perfect agreement among the different software within 5–10% difference for 30-min CO2 flux values. Conceptually different ideas about the selection and application of processing steps were a main reason for the differences in the CO2 flux estimates observed. A balance should be aspired between scientific freedom on the one hand, in order to advance methodical issues, and standardisation of procedures on the other hand, in order to obtain comparable fluxes for multi-site synthesis studies.
Gross community production and metabolic balance in the South Pacific Gyre, using a non intrusive bio-optical method
Authors: Claustre H. , Huot Y. , Obernosterer I. , Gentili B. , Tailliez D. , Lewis M.
Published: April 2010

Abstract. The very clear waters of the South Pacific Gyre likely constitute an end-member of oligotrophic conditions which remain essentially unknown with respect to its impact on carbon fixation and exportation. We describe a non-intrusive bio-optical method to quantify the various terms of a production budget (Gross community production, community losses, net community production) in this area. This method is based on the analysis of the diel cycle in Particulate Organic Carbon (POC), derived from high frequency measurements of the particle attenuation coefficient cp. We report very high integrated rates of Gross Community Production within the euphotic layer (average of 846±484 mg C m−2 d−1 for 17 stations) that are far above any rates determined using incubation techniques for such areas. Furthermore we show that the daily production of POC is essentially balanced by the losses so that the system cannot be considered as net heterotrophic. Our results thus agree well with geochemical methods, but not with incubation studies based on oxygen methods. We stress to the important role of deep layers, below the euphotic layer, in contributing to carbon fixation when incident irradiance at the ocean surface is high (absence of cloud coverage). These deep layers, not considered up to know, might fuel part of the heterotrophic processes in the upper layer, including through dissolved organic carbon. We further demonstrate that, in these extremely clear and stratified waters, integrated gross community production is proportional to the POC content and surface irradiance via an efficiency index ψ GCP*, the water column cross section for Gross Community Production. We finally discuss our results in the context of the role of oligotrophic gyre in the global carbon budget and of the possibility of using optical proxies from space for the development of growth community rather than primary production global models.
Soil atmosphere exchange of carbonyl sulfide (COS) regulated by diffusivity depending on water-filled pore space
Authors: Van Diest H. , Kesselmeier J.
Published: April 2010

Abstract. The exchange of carbonyl sulfide (COS) between soil and the atmosphere was investigated for three arable soils from Germany, China and Finland and one forest soil from Siberia for parameterization in the relation to ambient carbonyl sulfide (COS) concentration, soil water content (WC) and air temperature. All investigated soils acted as sinks for COS. A clear and distinct uptake optimum was found for the German, Chinese, Finnish and Siberian soils at 11.5%, 9%, 11.5%, and 9% soil WC, respectively, indicating that the soil WC acts as an important biological and physical parameter for characterizing the exchange of COS between soils and the atmosphere. Different optima of deposition velocities (Vd) as observed for the Chinese, Finnish and Siberian boreal soil types in relation to their soil WC, aligned at 19% in relation to the water-filled pore space (WFPS), indicating the dominating role of gas diffusion. This interpretation was supported by the linear correlation between Vd and bulk density. We suggest that the uptake of COS depends on the diffusivity dominated by WFPS, a parameter depending on soil WC, soil structure and porosity of the soil.
Effects of CO2 on particle size distribution and phytoplankton abundance during a mesocosm bloom experiment (PeECE II)
Authors: Engel A. , Schulz K. G. , Riebesell U. , Bellerby R. , Delille B. , Schartau M.
Published: April 2010

Abstract. The influence of seawater carbon dioxide (CO2) concentration on the size distribution of suspended particles (2–60 μm) and on phytoplankton abundance was investigated during a mesocosm experiment at the large scale facility (LFS) in Bergen, Norway, in the frame of the Pelagic Ecosystem CO2 Enrichment study (PeECE II). In nine outdoor enclosures the partial pressure of CO2 in seawater was modified by an aeration system to simulate past (~190 μatm CO2), present (~370 μatm CO2) and future (~700 μatm CO2) CO2 conditions in triplicates. Due to the initial addition of inorganic nutrients, phytoplankton blooms developed in all mesocosms and were monitored over a period of 19 days. Seawater samples were collected daily for analysing the abundance of suspended particles and phytoplankton with the Coulter Counter and with Flow Cytometry, respectively. During the bloom period, the abundance of small particles (<4 μm) significantly increased at past, and decreased at future CO2 levels. At that time, a direct relationship between the total-surface-to-total-volume ratio of suspended particles and DIC concentration was determined for all mesocosms. Significant changes with respect to the CO2 treatment were also observed in the phytoplankton community structure. While some populations such as diatoms seemed to be insensitive to the CO2 treatment, others like Micromonas spp. increased with CO2, or showed maximum abundance at present day CO2 (i.e. Emiliania huxleyi). The strongest response to CO2 was observed in the abundance of small autotrophic nano-plankton that strongly increased during the bloom in the past CO2 mesocosms. Together, changes in particle size distribution and phytoplankton community indicate a complex interplay between the ability of the cells to physiologically respond to changes in CO2 and size selection. Size of cells is of general importance for a variety of processes in marine systems such as diffusion-limited uptake of substrates, resource allocation, predator-prey interaction, and gravitational settling. The observed changes in particle size distribution are therefore discussed with respect to biogeochemical cycling and ecosystem functioning.
Response of marine viral populations to a nutrient induced phytoplankton bloom at different pCO2 levels
Authors: Larsen J. B. , Larsen A. , Thyrhaug R. , Bratbak G. , Sandaa R.-A.
Published: April 2010

Abstract. During the PeECE III mesocosm experiment in 2005 we investigated how the virioplankton community responded to increased levels of nutrients (N and P) and CO2. We applied a combination of flow cytometry, Pulsed Field Gel Electrophoresis and degenerate PCR primers to categorize and quantify individual viral populations, and to investigate their temporal dynamics. Species specific and degenerate primers enabled us to identify two specific large dsDNA viruses, EhV and CeV, infecting the haptophytes Emiliania huxleyi and Crysochromulina ericina, respectively. Some of the viral populations detected and enumerated by flow cytometry did not respond to altered CO2-levels, but the abundance of EhV and an unidentified dsDNA virus decreased with increasing CO2 levels. Our results thus indicate that CO2 conditions, or the related change in pH, may affect the marine pelagic food web at the viral level. Our results also demonstrate that in order to unravel ecological problems as how CO2 and nutrient levels affect the relationship between marine algal viruses and their hosts, we need to continue the effort to develop molecular markers used to identify both hosts and viruses.
Biomass production in experimental grasslands of different species richness during three years of climate warming
Authors: De Boeck H. J. , Lemmens C. M. H. M. , Zavalloni C. , Gielen B. , Malchair S. , Carnol M. , Merckx R. , Van den Berge J. , Ceulemans R. , Nijs I.
Published: April 2010

Abstract. Here we report on the single and combined impacts of climate warming and species richness on the biomass production in experimental grassland communities. Projections of a future warmer climate have stimulated studies on the response of terrestrial ecosystems to this global change. Experiments have likewise addressed the importance of species numbers for ecosystem functioning. There is, however, little knowledge on the interplay between warming and species richness. During three years, we grew experimental plant communities containing one, three or nine grassland species in 12 sunlit, climate-controlled chambers in Wilrijk, Belgium. Half of these chambers were exposed to ambient air temperatures (unheated), while the other half were warmed by 3°C (heated). Equal amounts of water were added to heated and unheated communities, so that warming would imply drier soils if evapotranspiration was higher. Biomass production was decreased due to warming, both aboveground (–29%) and belowground (–25%), as negative impacts of increased heat and drought stress in summer prevailed. Complementarity effects, likely mostly through both increased aboveground spatial complementarity and facilitative effects of legumes, led to higher shoot and root biomass in multi-species communities, regardless of the induced warming. Surprisingly, warming suppressed productivity the most in 9-species communities, which may be attributed to negative impacts of intense interspecific competition for resources under conditions of high abiotic stress. Our results suggest that warming and the associated soil drying could reduce primary production in many temperate grasslands, and that this will not necessarily be mitigated by efforts to maintain or increase species richness.