bluuebunny/crossref_metadata_2025 huggingface dataset:
Characteristics of Submesoscale Compensated/Reinforced Fronts in the Northern Bay of Bengal
Authors: Duan Wei , Cheng Xuhua , Zhou Yifei , Gula Jonathan
Published: October 2024

Fronts in the Bay of Bengal (BoB) are active and can potentially impact the regional dynamics such as temperature variability, salinity distribution and oceanic circulation. Based on the high resolution model output (LLC4320), this study investigates the characteristics of submesoscale fronts in the northern BoB and associated compensation/reinforcement effects. At sea surface, horizontal gradients of salinity and density are remarkable in the northern BoB, and they are nearly 3 times larger than temperature gradients. As the depth deepens, temperature gradients increase and become comparable to salinity gradients, while density gradients decrease a lot due to the increasing effects of compensation at subsurface. Statistical results show the dominance of salinity‐controlled fronts over temperature‐controlled fronts, and compensated fronts over reinforced fronts. The surface cooling/heating results in significant temporal variation of compensation at surface, but this variation is limited at subsurface by the blocking of the mixed layer base. The submesoscale‐selective feature of compensation is much more pronounced at subsurface layer than surface layer. From statistical analysis and idealized numerical model, we found the slump of salinity‐controlled compensated fronts are important in generating temperature inversion and maintaining barrier layer. This study validates the compensation theories originating from observations, and further illustrates the importance of subsurface compensated fronts using spatially continuous, regionally extended and longer‐term model output. The subsurface‐intensified submesoscale‐selective compensation is proved for the first time in this study.
Gross Primary Production of Antarctic Landfast Sea Ice: A Model‐Based Estimate
Authors: Wongpan P. , Meiners K. M. , Vancoppenolle M. , Fraser A. D. , Moreau S. , Saenz B. T. , Swadling K. M. , Lannuzel D.
Published: October 2024

Much of the Antarctic coast is covered by seasonal landfast sea ice (fast ice), which serves as an important habitat for ice algae. Fast‐ice algae provide a key early season food source for pelagic and benthic food webs, and contribute to biogeochemical cycling in Antarctic coastal ecosystems. Summertime fast ice is undergoing a decline, leading to more seasonal fast ice with unknown impacts on interconnected Earth system processes. Our understanding of the spatiotemporal variability of Antarctic fast ice, and its impact on polar ecosystems is currently limited. Evaluating the overall productivity of fast‐ice algae has historically been hampered by limitations in observations and models. By linking new fast‐ice extent maps with a one‐dimensional sea‐ice biogeochemical model, we provide the first estimate of the spatio‐seasonal variability of Antarctic fast‐ice algal gross primary production (GPP) and its annual primary production on a circum‐Antarctic scale. Experiments conducted for the 2005–2006 season provide a mean fast ice‐algal production estimate of 2.8 Tg C/y. This estimate represents about 12% of overall Southern Ocean sea‐ice algae production (estimated in a previous study), with the mean fast‐ice algal production per area being 3.3 times higher than that of pack ice. Our Antarctic fast‐ice GPP estimates are probably underestimated in the Ross Sea and Weddell Sea sectors because the sub‐ice platelet layer habitats and their high biomass are not considered.
Outbursts Upon Cooling of Low‐Temperature Binary Mixtures: Experiments and Their Planetary Implications
Authors: Raposa S. M. , Engle A. E. , Tan S. P. , Grundy W. M. , Hanley J. , Lindberg G. E. , Umurhan O. M. , Steckloff J. K. , Thieberger C. L. , Tegler S. C.
Published: October 2024

For many binary mixtures, the three‐phase solid‐liquid‐vapor equilibrium curve has intermediate pressures that are higher than the pressure at the two pure triple points. This curve shape results in a negative slope in the high‐temperature region near the triple point of the less volatile component. When freezing mixtures in the negative slope regime, fluid trapped below confined ice has latent heat released with more vapor upon cooling, and thus increases in pressure. If the rising pressure of the confined fluid overcomes the strength of the confining solid, which may be its own ice, it can produce an abrupt outburst of material and an increase in the system's overall pressure. Here, we report experimental results of freezing‐induced outbursts occurring in the N2/CH4, CO/CH4, and N2/C2H6 systems, and provide insight into the phenomenon through a thermodynamics perspective. We also propose other binary systems that may experience outbursts and explore the geological implications for icy worlds such as Titan, Triton, Pluto and Eris as well as rocky bodies, specifically Earth and Mars.
Capturing the Dynamics of Dissolved Organic Carbon (DOC) in Tidal Saltmarsh Estuaries Using Remote‐Sensing‐Informed Models
Authors: Tuzcu Kokal Aylin , Harringmeyer Joshua P. , Cronin‐Golomb Olivia , Weiser Matthew W. , Hong Jiyeong , Ghosh Nilotpal , Swanson Jaydi , Zhu Xiaohui , Musaoglu Nebiye , Fichot Cédric G.
Published: October 2024

The fluxes of dissolved organic carbon (DOC) through tidal marsh‐influenced estuaries remain poorly quantified and have been identified as a missing component in carbon‐cycle models. The extreme variability inherent to these ecosystems of the land‐ocean interface challenge our ability to capture DOC‐concentration dynamics and to calculate accurate DOC fluxes. In situ discrete and continuous measurements provide high‐quality estimates of DOC concentration, but these strategies are constrained spatially and temporally and can be costly to operate. Here, field measurements and high‐spatial‐resolution remote sensing were used to train and validate a predictive model of DOC‐concentration distributions in the Plum Island Estuary (PIE), a mesotidal saltmarsh‐influenced estuary in Massachusetts. A large set of field measurements collected between 2017 and 2023 was used to develop and validate an empirical algorithm to retrieve DOC concentration with a ±15% uncertainty from Sentinel‐2 imagery. Implementation on 141 useable images produced a 6‐year time series (2017–2023) of DOC distributions along the thalweg. Analysis of the time series helped identify river discharge, tidal water level (WL), and a marsh enhanced vegetation index 2 as predictors of DOC distribution in the estuary, and facilitated the training and validation of a simple model estimating the distribution. This simple model was able to predict DOC along the PIE thalweg within ±16% of the in situ measurements. Implementation for three years (2020–2022) illustrated how this type of remote‐sensing‐informed models can be coupled with the outputs hydrodynamic models to calculate DOC fluxes in tidal marsh‐influenced estuaries and estimate DOC export to the coastal ocean.
Development of a Multi‐Scale Meteorological Large‐Eddy Simulation Model for Urban Thermal Environmental Studies: The “City‐LES” Model Version 2.0
Authors: Kusaka Hiroyuki , Ikeda Ryosaku , Sato Takuto , Iizuka Satoru , Boku Taisuke
Published: October 2024

To bridge the gaps between meteorological large‐eddy simulation (LES) models and computational fluid dynamics (CFD) models for microscale urban climate simulations, the present study has developed a meteorological LES model for urban areas. This model simulates urban climates across both mesoscale (city scale) and microscale (city‐block scale). The paper offers an overview of this LES model, which distinguishes itself from standard numerical weather prediction models by resolving buildings and trees at the microscale simulations. It also differs from standard CFD models by accounting for atmospheric stratification and physical processes. Noteworthy features of this model include: (a) the calculation of long‐ and short‐wave radiations in three dimensions, incorporating multiple reflections within urban canopy layers using the radiosity method, and accounting for building and tree shadows in the simulations; (b) the provision of various heat stress indices (Universal Thermal Climate Index, Wet Bulb Globe Temperature, MRT, THI); (c) the assessment of the efficacy of heat stress mitigation measures such as dry‐mist spraying, roadside trees, cool pavements, and green/cool roofs strategies; (d) the capability to run on supercomputers, with the code parallelized in a three‐dimensional manner, and the model can also run on a graphics processing unit cluster. Following the introduction of this model, the study confirms its basic performance through various numerical experiments, including simulations of thermals in the convective boundary layer, coherent structure of turbulence over urban canopy, and thermal environment and heat stress indices in urban districts. The model developed in this study is intended to serve as a community tool for addressing both fundamental and applied studies in urban climatology.
Evapotranspiration and Rainfall Effects on Post‐Storm Salinization of Coastal Forests: Soil Characteristics as Important Factor for Salt‐Intolerant Tree Survival
Authors: Nordio Giovanna , Fagherazzi Sergio
Published: October 2024

Flooding and salinization triggered by storm surges threaten the survival of coastal forests. After a storm surge event, soil salinity can increase by evapotranspiration or decrease by rainfall dilution. Here we used a 1D hydrological model to study the combined effect of evapotranspiration and rainfall on coastal vegetated areas. Our results shed light on tree root uptake and salinity infiltration feedback as a function of soil characteristics. As evaporation increases from 0 to 2.5 mm/day, soil salinity reaches 80 ppt in both sandy and clay loam soils in the first 5 cm of soil depth. Transpiration instead involves the root zone located in the first 40 cm of depth, affecting salinization in a complex way. In sandy loam soils, storm surge events homogeneously salinize the root zone, while in clay loam soils salinization is stratified, partially affecting tree roots. Soil salinity stratification combined with low permeability maintain root uptakes in clay loam soils 4/5‐time higher with respect to sandy loam ones. When cumulative rainfall is larger than potential evapotranspiration ETp (ETp/Rainfall ratios lower than 1), dilution promotes fast recovery to pre‐storm soil salinity conditions, especially in sandy loam soils. Field data collected after two storm surge events support the results obtained. Electrical conductivity (a proxy for salinity) increases when the ratio ETp/Rainfall is around 1.76, while recovery occurs when the ratio is around 0.92. In future climate change scenarios with higher temperatures and storm‐surge frequency, coastal vegetation will be compromised, because of soil salinity values much higher than tolerable thresholds.
Success and opportunities of the American Academy of Pediatrics Marshall Klaus research grant program in neonatal-perinatal medicine
Authors: Lee Albertina , Weitkamp Joern-Hendrik , Tune Angie , Couto Jim , Lingappan Krithika
Published: October 2024

Background

Physician-scientists are a crucial link between clinical practice and research. The American Academy of Pediatrics (AAP) initiated the Marshall Klaus Perinatal Research Award to enhance the development of research skills among physicians training in Neonatal-Perinatal Medicine.

Methods

In this study, we sought to identify trends in funding along with geographical and demographic variables of the applicants and mentees and assess the applicants’ scholarly productivity and funding from the National Institutes of Health (NIH). We reviewed the data of applicants and awardees from 2015–2024.

Results

We found that basic science applications had a higher funding likelihood than clinical/translational applications. The geographical distribution of awardees is skewed. There was a significant association between awardee status and K08 or K23 funding attainment.

Conclusions

Future efforts should support more equitable award distribution and a diverse research landscape in neonatal-perinatal medicine.
Stromal androgen signaling governs essential niches in supporting prostate development and tumorigenesis
Authors: Rhee June‑Wha , Adzavon Yao Mawulikplimi , Sun Zijie
Published: October 2024

Androgens and androgen receptor (AR) mediated signaling pathways are essential for prostate development, morphogenesis, growth, and regeneration. Early tissue recombination experiments showed that AR-deficient urogenital sinus mesenchyme combined with intact urogenital sinus epithelium failed to develop into a prostate, demonstrating a stem cell niche for mesenchymal AR in prostatic development. Androgen signaling remains critical for prostate maturation and growth during postnatal stages. Importantly, most primary prostate cancer (PCa) cells express the AR, and aberrant activation of AR directly promotes PCa development, growth, and progression. Therefore, androgen deprivation therapy (ADT) targeting the AR in PCa cells is the main treatment for advanced PCa. However, it eventually fails, leading to the development of castration-resistant PCa, an incurable disease. Given these clinical challenges, the oncogenic AR action needs to be reevaluated for developing new and effective therapies. Recently, an essential niche role of stromal AR was identified in regulating prostate development and tumorigenesis. Here, we summarize the latest discoveries of stromal AR niches and their interactions with prostatic epithelia. In combination with emerging clinical and experimental evidence, we specifically discuss several important and long-term unanswered questions regarding tumor niche roles of stromal AR and highlight future therapeutic strategies by co-targeting epithelial and stromal AR for treating advanced PCa.
Using heart rate variability to predict neurological outcomes in preterm infants: a scoping review
Authors: Smolkova Magdalena , Sekar Shivani , Kim Seh Hyun , Sunwoo John , El-Dib Mohamed
Published: October 2024

Infants born preterm are at higher risk of neurological complications, including intraventricular haemorrhage and white matter injury. After discharge, these infants may experience adverse neurodevelopmental outcomes and exhibit lower educational attainment. Early detection of brain injury and accurate prediction of neurodevelopmental impairment would allow early intervention and support. Heart rate variability (HRV) describes the variation of time intervals between each subsequent heartbeat. HRV is controlled by the autonomic nervous system, which may be affected by hypoxia and compromised blood flow. While HRV has primarily been investigated in neonatal sepsis, the association between HRV, brain injury and neurodevelopmental outcomes in preterm infants is less established. The present scoping review examines the utility of HRV monitoring for predicting short-term and long-term neurological outcomes in preterm infants. Following systematic search of Medline, Embase, Web of Science and the Cochrane Library, 15 studies were included. Nine studies examined the relationship between HRV and brain injury, with all but two showed an association. Eight studies examined the relationship between HRV and long-term outcomes and all eight found an association. This scoping review suggests that decreased HRV in the neonatal period is associated with short- and long-term neurodevelopmental outcomes in preterm infants.

Impact

Changes in heart rate variability correlate with the occurrence of intraventricular haemorrhage in preterm infants.

A decrease in heart rate variability may precede the development of intraventricular haemorrhage.

Alterations in heart rate variability correlate with long-term neurodevelopmental outcomes.

Significant variability exists in metrics used in assessing heart rate variability.
CHAC1 blockade suppresses progression of lung adenocarcinoma by interfering with glucose metabolism via hijacking PKM2 nuclear translocation
Authors: Pan Junfan , Wu Sixuan , Pan Qihong , Zhang Yuan , He Liu , Yao Qiwei , Chen Jinyuan , Li Jiancheng , Xu Yiquan
Published: October 2024

Patients with lung adenocarcinoma (LUAD) generally have poor prognosis. Abnormal cellular energy metabolism is a hallmark of LUAD. Glutathione-specific gamma-glutamylcyclotransferase 1 (CHAC1) is a member of the γ-glutamylcyclotransferase family and an unfolded protein response pathway regulatory gene. Its biological function and molecular regulatory mechanism, especially regarding energy metabolism underlying LUAD, remain unclear. By utilizing tissue microarray and data from The Cancer Genome Atlas and Gene Expression Omnibus, we found that CHAC1 expression was markedly higher in LUAD tissues than in non-tumor tissues, and was positively correlated with poor prognosis. Phenotypically, CHAC1 overexpression enhanced the proliferation, migration, invasion, tumor sphere formation, and glycolysis ability of LUAD cells, resulting in tumor growth both in vitro and in vivo. Mechanistically, through a shotgun mass spectrometry-based proteomic approach and high-throughput RNA sequencing, we found that CHAC1 acted as a bridge connecting UBA2 and PKM2, enhancing the SUMOylation of PKM2. The SUMOylated PKM2 then transferred from the cytoplasm to the nucleus, activating the expression of glycolysis-related genes and enhancing the Warburg effect. Lastly, E2F Transcription Factor 1 potently activated CHAC1 transcription by directly binding to the CHAC1 promoter in LUAD cells. The results of this study implied that CHAC1 regulates energy metabolism and promotes glycolysis in LUAD progression.
Nuclear PCGF3 inhibits the antiviral immune response by suppressing the interferon-stimulated gene
Authors: Da Gula , Wang Junmin , Shang Jing , Xun Cuiping , Yu Yang , Wang Yong , Tie Ning , Li Hongbin
Published: October 2024

Type I interferon (IFN-I) plays a crucial role in the antiviral immune response and inflammatory autoimmune diseases by inducing the expression of IFN-stimulated genes (ISGs). Hence, the regulation of ISG expression is fundamental for maintaining immune homeostasis. In this study, we found that PCGF3 negatively regulates the antiviral response by suppressing the expression of ISGs. The deficiency of PCGF3 in innate immune cells results in an augmented expression of ISGs in response to IFN-I stimulation. Mechanistically, PCGF3 is recruited to interferon-stimulated response elements (ISREs) region in an IFN-dependent way, precluding STAT1 from binding to the ISG promoter and diminishing ISRE activity. Additionally, we observed a negative correlation between decreased PCGF3 expression and elevated ISG expression in peripheral blood mononuclear cells (PBMCs) of patients with dermatomyositis (DM). Our findings clarified the epigenetic regulatory role of PCGF3 in inhibiting the excessive expression of ISGs induced by IFN-I under pathological circumstances.
Chromosomal aberrations and early mortality in a non-mammalian vertebrate: example from pressure-induced triploid Atlantic salmon
Authors: Delaval Aurélien , Glover Kevin A. , Solberg Monica F. , Fjelldal Per Gunnar , Hansen Tom , Harvey Alison C.
Published: October 2024

In commercial aquaculture, the production of triploid fish is currently the most practical approach to prevent maturation and farm-to-wild introgression following escapes. However, triploids often exhibit poor welfare, and the underlying mechanisms remain unclear. Inheritance issues associated with sub-optimal hydrostatic pressure treatments used to induce triploidy, or the genetic background of parental fish, have been speculated to contribute. We tested this by quantifying the frequency and type of chromosomal aberrations in Atlantic salmon subjected to a gradient of sub-optimal pressure treatments (Experiment 1) and from multiple mothers (Experiment 2). From these experiments, we genotyped a subsample of ~900 eyed eggs and all ~3300 surviving parr across ~20 microsatellites. In contrast to the low frequency of chromosomal aberrations in the diploid (no hydrostatic pressure) and triploid (full 9500 PSI treatment) controls, eyed eggs subjected to sub-optimal pressure treatments (6500–8500 PSI) had a higher incidence of chromosomal aberrations such as aneuploidy and uniparental disomy, corresponding to lower triploidization success and higher egg mortality rates. We also observed maternal effects on triploidization success and incidence of chromosomal aberrations, with certain half-sibling families exhibiting more aberrations than others. Chromosomal aberrations were rare among surviving parr, suggesting a purge of maladapted individuals during early development. This study demonstrates that sub-optimal hydrostatic pressure treatments and maternal effects not only influence the success of triploidization treatments, but may also affect the incidence of chromosomal aberrations and early mortality. The results have important implications for aquaculture breeding programs and their efforts to prevent farm-to-wild introgression.
The lncRNA SNHG26 drives the inflammatory-to-proliferative state transition of keratinocyte progenitor cells during wound healing
Authors: Li Dongqing , Liu Zhuang , Zhang Letian , Bian Xiaowei , Wu Jianmin , Li Li , Chen Yongjian , Luo Lihua , Pan Ling , Kong Lingzhuo , Xiao Yunting , Wang Jiating , Zhang Xiya , Wang Wang , Toma Maria , Piipponen Minna , Sommar Pehr , Xu Landén Ning
Published: October 2024

The cell transition from an inflammatory phase to a subsequent proliferative phase is crucial for wound healing, yet the driving mechanism remains unclear. By profiling lncRNA expression changes during human skin wound healing and screening lncRNA functions, we identify SNHG26 as a pivotal regulator in keratinocyte progenitors underpinning this phase transition. Snhg26-deficient mice exhibit impaired wound repair characterized by delayed re-epithelization accompanied by exacerbated inflammation. Single-cell transcriptome analysis combined with gain-of-function and loss-of-function of SNHG26 in vitro and ex vivo reveals its specific role in facilitating inflammatory-to-proliferative state transition of keratinocyte progenitors. A mechanistic study unravels that SNHG26 interacts with and relocates the transcription factor ILF2 from inflammatory genomic loci, such as JUN, IL6, IL8, and CCL20, to the genomic locus of LAMB3. Collectively, our findings suggest that lncRNAs play cardinal roles in expediting tissue repair and regeneration and may constitute an invaluable reservoir of therapeutic targets in reparative medicine.
The membrane curvature-inducing REEP1-4 proteins generate an ER-derived vesicular compartment
Authors: Shibata Yoko , Mazur Emily E. , Pan Buyan , Paulo Joao A. , Gygi Steven P. , Chavan Suyog , Valerio L. Sebastian Alexis , Zhang Jiuchun , Rapoport Tom A.
Published: October 2024

The endoplasmic reticulum (ER) is shaped by abundant membrane curvature-generating proteins that include the REEP family member REEP5. The REEP1 subfamily, consisting of four proteins in mammals (REEP1-4), is less abundant and lack a N-terminal region. Mutations in REEP1 and REEP2 cause Hereditary Spastic Paraplegia, but the function of these four REEP proteins remains enigmatic. Here we show that REEP1-4 reside in a unique vesicular compartment and identify features that determine their localization. Mutations in REEP1-4 that compromise curvature generation, including those causing disease, relocalize the proteins to the bulk ER. These mutants interact with wild-type proteins to retain them in the ER, consistent with their autosomal-dominant disease inheritance. REEP1 vesicles contain the membrane fusogen atlastin-1, but not general ER proteins. We propose that REEP1-4 generate these vesicles themselves by budding from the ER, and that they cycle back to the ER by atlastin-mediated fusion. The vesicles may serve to regulate ER tubule dynamics.
Biofunctionalized dissolvable hydrogel microbeads enable efficient characterization of native protein complexes
Authors: Shao Xinyang , Tian Meng , Yin Junlong , Duan Haifeng , Tian Ye , Wang Hui , Xia Changsheng , Wang Ziwei , Zhu Yanxi , Wang Yifan , Chaihu Lingxiao , Tan Minjie , Wang Hongwei , Huang Yanyi , Wang Jianbin , Wang Guanbo
Published: October 2024

The characterization of protein complex is vital for unraveling biological mechanisms in various life processes. Despite advancements in biophysical tools, the capture of non-covalent complexes and deciphering of their biochemical composition continue to present challenges for low-input samples. Here we introduce SNAP-MS, a Stationary-phase-dissolvable Native Affinity Purification and Mass Spectrometric characterization strategy. It allows for highly efficient purification and characterization from inputs at the pico-mole level. SNAP-MS replaces traditional elution with matrix dissolving during the recovery of captured targets, enabling the use of high-affinity bait-target pairs and eliminates interstitial voids. The purified intact protein complexes are compatible with native MS, which provides structural information including stoichiometry, topology, and distribution of proteoforms, size variants and interaction states. An algorithm utilizes the bait as a charge remover and mass corrector significantly enhances the accuracy of analyzing heterogeneously glycosylated complexes. With a sample-to-data time as brief as 2 hours, SNAP-MS demonstrates considerable versatility in characterizing native complexes from biological samples, including blood samples.
Multifunctional human visual pathway-replicated hardware based on 2D materials
Authors: Peng Zhuiri , Tong Lei , Shi Wenhao , Xu Langlang , Huang Xinyu , Li Zheng , Yu Xiangxiang , Meng Xiaohan , He Xiao , Lv Shengjie , Yang Gaochen , Hao Hao , Jiang Tian , Miao Xiangshui , Ye Lei
Published: October 2024

Artificial visual system empowered by 2D materials-based hardware simulates the functionalities of the human visual system, leading the forefront of artificial intelligence vision. However, retina-mimicked hardware that has not yet fully emulated the neural circuits of visual pathways is restricted from realizing more complex and special functions. In this work, we proposed a human visual pathway-replicated hardware that consists of crossbar arrays with split floating gate 2D tungsten diselenide (WSe2) unit devices that simulate the retina and visual cortex, and related connective peripheral circuits that replicate connectomics between the retina and visual cortex. This hardware experimentally displays advanced multi-functions of red–green color-blindness processing, low-power shape recognition, and self-driven motion tracking, promoting the development of machine vision, driverless technology, brain–computer interfaces, and intelligent robotics.
Perspectives on the physics of late-type stars from beyond low earth orbit, the moon and mars
Authors: Mathur Savita , Santos Ângela R. G.
Published: October 2024

With the new discoveries enabled thanks to the recent space missions, stellar physics is going through a revolution. However, these discoveries opened the door to many new questions that require more observations. The European Space Agency’s Human and Robotic Exploration program provides an excellent opportunity to push forward the limits of our knowledge and better understand stellar structure and dynamics evolution. Long-term observations, Ultra-Violet observations, and a stellar imager are a few highlights of proposed missions for late-type stars that will enhance the already planned space missions.
Impact of hydrophilic substances on Ostwald ripening in emulsions stabilized by varied hydrophilic group surfactants
Authors: Kim Jihyeon , Noh Yejin , McClements David Julian , Choi Seung Jun
Published: October 2024

This study investigated the impact of water-soluble substances on Ostwald ripening in emulsions stabilized by surfactants with different head groups (Brij S20 and Tween 60). Adding ≥20% (w/w) corn oil to the oil phase effectively inhibited Ostwald ripening of n-decane emulsions due to compositional ripening. The presence of glucose, maltose, or glycerol in the aqueous phase of the emulsions decreased the Ostwald ripening rate, regardless of emulsifier type. However, the impact of propylene glycol depended on emulsifier type, accelerating Ostwald ripening in Brij S20-stabilized emulsions but having little effect in Tween 60-stabilized emulsions. This effect was mainly attributed to the ability of propylene glycol to alter interfacial characteristics. When emulsions were fabricated with a mixture of n-decane and corn oil, glucose and maltose were still effective in inhibiting Ostwald ripening, but glycerol lost its ability. These results have important implications for formulating emulsion-based delivery systems with enhanced shelf life.
YAP/TAZ drives Notch and angiogenesis mechanoregulation in silico
Authors: Passier Margot , Bentley Katie , Loerakker Sandra , Ristori Tommaso
Published: October 2024

Endothelial cells are key players in the cardiovascular system. Among other things, they are responsible for sprouting angiogenesis, the process of new blood vessel formation essential for both health and disease. Endothelial cells are strongly regulated by the juxtacrine signaling pathway Notch. Recent studies have shown that both Notch and angiogenesis are influenced by extracellular matrix stiffness; however, the underlying mechanisms are poorly understood. Here, we addressed this challenge by combining computational models of Notch signaling and YAP/TAZ, stiffness- and cytoskeleton-regulated mechanotransducers whose activity inhibits both Dll4 (Notch ligand) and LFng (Notch-Dll4 binding modulator). Our simulations successfully mimicked previous experiments, indicating that this YAP/TAZ-Notch crosstalk elucidates the Notch and angiogenesis mechanoresponse to stiffness. Additional simulations also identified possible strategies to control Notch activity and sprouting angiogenesis via cytoskeletal manipulations or spatial patterns of alternating stiffnesses. Our study thus inspires new experimental avenues and provides a promising modeling framework for further investigations into the role of Notch, YAP/TAZ, and mechanics in determining endothelial cell behavior during angiogenesis and similar processes.
Transcriptome dataset of mouse adipose tissue across estrous cycles
Authors: Zheng Hongjie , Bai Yier , Wu Shan , Jiang Zhixuan , Pei Qing , Yao Min
Published: October 2024

Adipose tissue is crucial for energy storage and release, ensuring energy homeostasis within the body. Disturbances in the physiology of adipose tissue have been associated with various health disorders, such as obesity and diabetes. The reproductive cycle represents a fundamental biological pattern in female physiology. Although previous research has highlighted the substantial regulatory influence of ovarian hormones on adipose tissue, our understanding of the comprehensive changes in adipose tissue throughout the reproductive cycle remains limited. In this study, we examined the transcriptomic profile of female mouse-adipose tissue across their complete estrous cycles. The findings provided detailed descriptions of the datasets generated, including information on data collection, processing, and quality control. The study also demonstrated the robustness of these data through various validation steps. These findings serve as crucial resources for investigating the role of estrous cycle rhythmicity in important adipose tissue processes in the future.
LungHist700: A dataset of histological images for deep learning in pulmonary pathology
Authors: Diosdado Jorge , Gilabert Pere , Seguí Santi , Borrego Henar
Published: October 2024

Accurate detection and classification of lung malignancies are crucial for early diagnosis, treatment planning, and patient prognosis. Conventional histopathological analysis is time-consuming, limiting its clinical applicability. To address this, we present a dataset of 691 high-resolution (1200 × 1600 pixels) histopathological lung images, covering adenocarcinomas, squamous cell carcinomas, and normal tissues from 45 patients. These images are subdivided into three differentiation levels for both pathological types: well, moderately, and poorly differentiated, resulting in seven classes for classification. The dataset includes images at 20x and 40x magnification, reflecting real clinical diversity. We evaluated image classification using deep neural network and multiple instance learning approaches. Each method was used to classify images at 20x and 40x magnification into three superclasses. We achieved accuracies between 81% and 92%, depending on the method and resolution, demonstrating the dataset’s utility.
Effects of SZV-2649, a new multiple ion channel inhibitor mexiletine analogue
Authors: Mohammed Aiman Saleh A. , Naveed Muhammad , Szabados Tamara , Szatmári István , Lőrinczi Bálint , Mátyus Péter , Czompa Andrea , Orvos Péter , Husti Zoltán , Hornyik Tibor , Topal Leila , Déri Szilvia , Jost Norbert , Virág László , Bencsik Péter , Baczkó István , Varró András
Published: October 2024

The antiarrhythmic and cardiac electrophysiological effects of SZV-2649 that contains a 2,6-diiodophenoxy moiety but lacks the benzofuran ring system present in amiodarone, were studied in mammalian cell line, rat and dog cardiac preparations. SZV-2649 exerted antiarrhythmic effects against coronary artery occlusion/reperfusion induced ventricular arrhythmias in rats and in acetylcholine- and burst stimulation induced atrial fibrillation in dogs. SZV-2649 inhibited hERG and GIRK currents in HEK cells (IC50: 342 and 529 nM, respectively). In canine ventricular myocytes, SZV-2649 (10 µM) decreased the densities of IKr, and Ito outward and INaL and ICaL inward currents. The compound (2.5–10 µM) elicited Class IB type Vmax reducing and Class III type action potential duration prolonging effects in dog right ventricular muscle preparations. In canine atrial muscle, SZV-2629 (2.5–10 µM) moderately prolonged action potential duration and this effect was greatly augmented in preparations pretreated with 1 µM carbachol. In conclusion, SZV-2649, has antiarrhythmic effects based on its multiple ion channel blocking properties. Since its chemical structure substantially differs from that of amiodarone, it is expected that SZV-2649 would exhibit fewer adverse effects than the currently used most effective multichannel inhibitor drug amiodarone and may be a promising molecule for further development.
Expression of a novel NaD1 recombinant antimicrobial peptide enhances antifungal and insecticidal activities
Authors: Royan Sara , Shirzadian-Khorramabad Reza , Zibaee Arash , Bagherieh-Najjar Mohammad B. , Nazarian-Firouzabadi Farhad
Published: October 2024

This study aimed to increase the antifungal and insecticidal activities of NaD1, as an antimicrobial peptides (AMP), by improving its interaction with the fungal cell wall and chitin monomeric units in insect midguts. Hence, the chitin-binding domains (CBDs) of wheat germ agglutinin protein (WGA) were fused to either N- or C-terminus of NaD1 generating transgenic Nicotiana tabacum hairy roots (HRs). Molecular assessments confirmed the integration of NaD1 transgenes, their transcription and production of recombinant peptides in the HR lines. Total protein of (CBD)4-NaD1 and NaD1-(CBD)4 transgenic lines inhibited the growth of Pyricularia oryzae mycelium, suggesting that fusion of CBD to NaD1 can increase NaD1 half-life, leading to higher affinity toward cell wall chitin. Furthermore, feeding the third-instar larvae of Chilo suppressalis with both (CBD)4-NaD1 and NaD1-(CBD)4 extracts exhibited a higher mortality rate. Both NaD1-CBDs caused a significant decrease in trypsin (TRY) and chymotrypsin (CTR) activities in the larvae, while enhancing the activity of antioxidant enzymes CAT, POD, APX, and SOD. Therefore, feeding the larvae by total extract of NaD1-(CBD)4 and (CBD)4-NaD1 HR lines probably increased affinity to midgut chitin in C. suppressalis, enhancing insecticidal activities. Overall, the results indicate that recombinant peptides are effective in enhancing fungal and insect resistance.
Combining human liver ECM with topographically featured electrospun scaffolds for engineering hepatic microenvironment
Authors: Gao Yunxi , Gadd Victoria L. , Heim Maria , Grant Rhiannon , Bate Thomas S. R. , Esser Hannah , Gonzalez Sofia Ferreira , Man Tak Yung , Forbes Stuart J. , Callanan Anthony
Published: October 2024

Liver disease cases are rapidly expanding worldwide, and transplantation remains the only effective cure for end-stage disease. There is an increasing demand for developing potential drug treatments, and regenerative therapies using in-vitro culture platforms. Human decellularized extracellular matrix (dECM) is an appealing alternative to conventional animal tissues as it contains human-specific proteins and can serve as scaffolding materials. Herein we exploit this with human donor tissue from discarded liver which was not suitable for transplant using a synergistic approach to combining biological and topographical cues in electrospun materials as an in-vitro culture platform. To realise this, we developed a methodology for incorporating human liver dECM into electrospun polycaprolactone (PCL) fibres with surface nanotopographies (230–580 nm). The hybrid scaffolds were fabricated using varying concentrations of dECM; their morphology, mechanical properties, hydrophilicity and stability were analysed. The scaffolds were validated using HepG2 and primary mouse hepatocytes, with subsequent results indicating that the modified scaffolds-maintained cell growth and influenced cell attachment, proliferation and hepatic-related gene expression. This work demonstrates a novel approach to harvesting the potential from decellularized human tissues in the form of innovative in-vitro culture platforms for liver.
Repeated FRAP of the actin-binding protein CapG in the cell nucleus—a functional assay for EGF signaling in the single live breast cancer cell
Authors: Fernandez M. K. , Sinha M. , Kühnemuth R. , Renz M.
Published: October 2024

Compartmentalization and differential distribution of proteins within a cell maintain cellular function and viability. CapG is a gelsolin-related actin-binding protein that distributes in steady state diffusively throughout cytoplasm and cell nucleus. To detect changes in CapG’s nucleocytoplasmic shuttling in response to external stimuli on the single cell level, we established repeated FRAP experiments of one and the same breast cancer cell. With this experimental set up, we found that ATP-depletion reversibly decreased CapG’s shuttling into the cell nucleus. The addition of epidermal growth factor (EGF) increased CapG’s nuclear shuttling within minutes. Serum-starvation doubled the number of breast cancer cells from 40 to 80% displaying increased CapG shuttling in response to EGF. Testing five different potential CapG phosphorylation sites, we found that serine 70 mediates the increase in CapG’s nuclear shuttling triggered by EGF. Thus, repeated FRAP of CapG in the cell nucleus can be used as functional readout of signaling cascades in the same single live breast cancer cell.
A novel multi-scale network intrusion detection model with transformer
Authors: Xi Chiming , Wang Hui , Wang Xubin
Published: October 2024

Network is an essential tool today, and the Intrusion Detection System (IDS) can ensure the safe operation. However, with the explosive growth of data, current methods are increasingly struggling as they often detect based on a single scale, leading to the oversight of potential features in the extensive traffic data, which may result in degraded performance. In this work, we propose a novel detection model utilizing multi-scale transformer namely IDS-MTran. In essence, the collaboration of multi-scale traffic features broads the pattern coverage of intrusion detection. Firstly, we employ convolution operators with various kernels to generate multi-scale features. Secondly, to enhance the representation of features and the interaction between branches, we propose Patching with Pooling (PwP) to serve as a bridge. Next, we design multi-scale transformer-based backbone to model the features at diverse scales, extracting potential intrusion trails. Finally, to fully capitalize these multi-scale branches, we propose the Cross Feature Enrichment (CFE) to integrate and enrich features, and then output the results. Sufficient experiments show that compared with other models, the proposed method can distinguish different attack types more effectively. Specifically, the accuracy on three common datasets NSL-KDD, CIC-DDoS 2019 and UNSW-NB15 has all exceeded 99%, which is more accurate and stable.
Morphology of the normative human cone photoreceptor mosaic and a publicly available adaptive optics montage repository
Authors: Cooper Robert F. , Kalaparambath Snega , Aguirre Geoffrey K. , Morgan Jessica I. W.
Published: October 2024

Adaptive optics ophthalmoscopy has enabled visualization of the in vivo human photoreceptor mosaic in health, disease and its treatment. Despite this, the clinical utility of the imaging technology has been limited by a lack of automated analysis techniques capable of accurately quantifying photoreceptor structure and a lack of an available normative image database. Here, we present a fully automated algorithm for estimating cone spacing and density over a complete adaptive optics montage along with a database of normative images and cone densities. We imaged the cone mosaics surrounding the fovea and along the horizontal and vertical meridians of fifty normal-sighted controls with a custom-built, multimodal adaptive optics scanning light ophthalmoscope. Cone spacing was automatically measured in the frequency domain and spacing measurements were converted to estimates of cone density at all locations across the montage. Consistent with previous reports, cone density measurements were highest near fovea (152,906 ± 53,209 cones/mm2) and decreased exponentially with eccentricity. A 2.5-fold variation was found in cone density estimates at 0.1 mm, this variation decreased to 1.75-fold at 1 mm. We provide all images, mosaic quantifications, and automated software open source. This database will aid investigators in translating adaptive optics ophthalmoscopy to clinical applications.
Modern CRRT systems are associated with lower risk of hypothermia
Authors: Bell Max , Hertzberg Daniel , Hansson Fredrik , Carlsson Åsa , Berkius Johan , Vimlati Laszlo , Nilsson Ann-Kristin , Ekström Carolina , Broman Marcus
Published: October 2024

One risk of continuous renal replacement therapy (CRRT) is inadvertent hypothermia (IH), which is defined as a non-therapeutic core temperature decrease below normal. In continuous renal replacement therapy, heat loss will always occur from blood pumped through the dialysis circuit to cooler environment, predisposing for hypothermia. Blood flow and effluent flows are the most important parameters causing heat loss. We investigated and compared the novel TherMax warmer to previous generation technologies during CRRT in a multicenter setting. This was a prospective observational multicenter study with historic single-center controls. The study group consisted of 100 patients in eight Swedish ICUs with clinical indication for CRRT, using the PrisMax platform and TherMax warmer. Both patient and set warmer temperatures were recorded hourly for the first 24 h. The presence of treatment hours in hypothermia (< 36.0 Celsius) and the difference between set warmer temperature and measured patient temperature in the multi-center study cohort were compared to a matched single-center historic control cohort treated with the old Prismaflex platform and adjacent Barkey warmer. In the TherMax group 77/100 (77.0%) of patients, and for controls 26/86 (30.2%) of patients were free of hypothermia (Chi square, p < 0.001). The mean number of hours spent in hypothermia was (mean ± SD) 0.66 ± 1.60 and 6.92 ± 7.79 h in the TherMax and control groups, respectively (Chi square p < 0.001). In the study group the patient temperature was higher than the set temperature on the warmer with a difference of Δ0.47 ± 0.80 °C (minor difference), whereas in the control group the set temperature on the warmer was higher than the patient temperature with a difference of Δ4.55 ± 1.00 °C (over-correction). The novel TherMax warmer technology protected against hypothermia and was significantly more accurate than the Barkey warmer.
Low-loss metasurfaces based on discretized meta-atoms
Authors: Gao Yisheng
Published: October 2024

Metasurfaces are established tools for manipulating light and enhancing light-matter interactions. However, the loss of conventional meta-atoms usually limits the performance potential of metasurfaces. In this study, we propose a class of metasurfaces based on discretized meta-atoms able to mitigate the radiative and intrinsic losses. By discretizing meta-atoms, we reduce the loss of metal metasurfaces to levels comparable to dielectric metasurfaces in the short-wavelength infrared region at the surface lattice resonance mode. Furthermore, we propose a coupling model to explain the observed reduction in loss in full agreement with the results obtained from finite-element method. We also reproduce this phenomenon using dielectric metasurface at electric and magnetic resonances in the visible region. Our finding offers valuable insights for the design and application of metasurfaces, while also providing theoretical implications for other resonance fields beyond metasurfaces.
Wearable mechanical and electrochemical sensors for real-time health monitoring
Authors: Xue Ziao , Gai YanSong , Wu Yuxiang , liu Zhuo , Li Zhou
Published: October 2024

Wearable sensors provide a good solution for real-time monitoring of human health, and great progress has been made in miniaturization, flexibility, low power consumption and intelligence in recent years. Here, we introduce the principles of wearable sensors and their applications in disease surveillance. Physiological signals mainly include physical signals and biochemical signals. Among various sensors used to monitor physiological signals, we have introduced the basic working principles of mechanical sensors and electrochemical sensors. We summarize the examples of the clever integration of sensors with daily wearable products, and introduce cases of disease monitoring applied to the respiratory system, cardiovascular system, nervous system, musculoskeletal system and metabolic system. In view of the current situation of wearable sensors in terms of materials, structure, technology and energy, we discuss challenges and solutions of wearable mechanical and electrochemical sensors, and look forward to the application prospects of wearable sensors.
In-situ sub-angstrom characterization of laser-lubricant interaction in a thermo-tribological system
Authors: Cheng Qilong , Rajauria Sukumar , Schreck Erhard , Smith Robert , Dai Qing , Bogy David B.
Published: October 2024

Laser-lubricant interaction has been a critical reliability issue in a thermo-tribological system named heat-assisted magnetic recording, one of the next generation hard disk drive solutions to increasing data storage. The lubricant response under laser irradiation and the subsequent lubricant recovery are crucial to the system’s reliability and longevity, however, they cannot be diagnosed locally and timely so far. Here, we propose a thermal scheme to in-situ characterize the mechanical laser-lubricant interaction. The nanometer-thick lubricant has a thermal barrier effect on the near-field thermal transport in the system, according to which the lubricant thickness can be determined. As demonstrations, this paper reports the first quantitative in-situ measurements of the laser-induced lubricant depletion and the subsequent reflow dynamics. The proposed scheme shows a sub-angstrom resolution (~0.2 Å) and a fast response time within seconds, rendering in-situ real-time lubricant diagnosis feasible in the practical hard disk drive products.