bluuebunny/crossref_metadata_2025 huggingface dataset:
Supplementary Methods, Tables 1-5, Figures 1-4 from Classification of Epstein–Barr Virus–Positive Gastric Cancers by Definition of DNA Methylation Epigenotypes
Authors: Matsusaka Keisuke , Kaneda Atsushi , Nagae Genta , Ushiku Tetsuo , Kikuchi Yasuko , Hino Rumi , Uozaki Hiroshi , Seto Yasuyuki , Takada Kenzo , Aburatani Hiroyuki , Fukayama Masashi
Published: March 2023

PDF file - 769K
Supplementary Movie 4 from Spatial Regulation of RhoA Activity during Pancreatic Cancer Cell Invasion Driven by Mutant p53
Authors: Timpson Paul , McGhee Ewan J. , Morton Jennifer P. , von Kriegsheim Alex , Schwarz Juliane P. , Karim Saadia A. , Doyle Brendan , Quinn Jean A. , Carragher Neil O. , Edward Mike , Olson Michael F. , Frame Margaret C. , Brunton Valerie G. , Sansom Owen J. , Anderson Kurt I.
Published: March 2023

Supplementary Movie 4 from Spatial Regulation of RhoA Activity during Pancreatic Cancer Cell Invasion Driven by Mutant p53
Supplementary Movie 3 from Spatial Regulation of RhoA Activity during Pancreatic Cancer Cell Invasion Driven by Mutant p53
Authors: Timpson Paul , McGhee Ewan J. , Morton Jennifer P. , von Kriegsheim Alex , Schwarz Juliane P. , Karim Saadia A. , Doyle Brendan , Quinn Jean A. , Carragher Neil O. , Edward Mike , Olson Michael F. , Frame Margaret C. , Brunton Valerie G. , Sansom Owen J. , Anderson Kurt I.
Published: March 2023

Supplementary Movie 3 from Spatial Regulation of RhoA Activity during Pancreatic Cancer Cell Invasion Driven by Mutant p53
Supplementary Table 1 from Sonic Hedgehog Pathway Promotes Metastasis and Lymphangiogenesis via Activation of Akt, EMT, and MMP-9 Pathway in Gastric Cancer
Authors: Yoo Young A. , Kang Myoung Hee , Lee Hyun Joo , Kim Baek-hui , Park Jong Kuk , Kim Hyun Koo , Kim Jun Suk , Oh Sang Cheul
Published: March 2023

PDF file - 15K
Supplementary Methods, Figure and Movie Legends from Spatial Regulation of RhoA Activity during Pancreatic Cancer Cell Invasion Driven by Mutant p53
Authors: Timpson Paul , McGhee Ewan J. , Morton Jennifer P. , von Kriegsheim Alex , Schwarz Juliane P. , Karim Saadia A. , Doyle Brendan , Quinn Jean A. , Carragher Neil O. , Edward Mike , Olson Michael F. , Frame Margaret C. , Brunton Valerie G. , Sansom Owen J. , Anderson Kurt I.
Published: March 2023

Supplementary Methods, Figure and Movie Legends from Spatial Regulation of RhoA Activity during Pancreatic Cancer Cell Invasion Driven by Mutant p53
Supplementary Figure 3 from Sonic Hedgehog Pathway Promotes Metastasis and Lymphangiogenesis via Activation of Akt, EMT, and MMP-9 Pathway in Gastric Cancer
Authors: Yoo Young A. , Kang Myoung Hee , Lee Hyun Joo , Kim Baek-hui , Park Jong Kuk , Kim Hyun Koo , Kim Jun Suk , Oh Sang Cheul
Published: March 2023

PDF file - 137K
Supplementary Figure 6 from Spatial Regulation of RhoA Activity during Pancreatic Cancer Cell Invasion Driven by Mutant p53
Authors: Timpson Paul , McGhee Ewan J. , Morton Jennifer P. , von Kriegsheim Alex , Schwarz Juliane P. , Karim Saadia A. , Doyle Brendan , Quinn Jean A. , Carragher Neil O. , Edward Mike , Olson Michael F. , Frame Margaret C. , Brunton Valerie G. , Sansom Owen J. , Anderson Kurt I.
Published: March 2023

Supplementary Figure 6 from Spatial Regulation of RhoA Activity during Pancreatic Cancer Cell Invasion Driven by Mutant p53
Supplementary Figure Legends 1-4 from FLT3 Ligand Enhances the Cancer Therapeutic Potency of Naked RNA Vaccines
Authors: Kreiter Sebastian , Diken Mustafa , Selmi Abderraouf , Diekmann Jan , Attig Sebastian , Hüsemann Yves , Koslowski Michael , Huber Christoph , Türeci Özlem , Sahin Ugur
Published: March 2023

PDF file - 67K
Supplementary Figure 1 from FLT3 Ligand Enhances the Cancer Therapeutic Potency of Naked RNA Vaccines
Authors: Kreiter Sebastian , Diken Mustafa , Selmi Abderraouf , Diekmann Jan , Attig Sebastian , Hüsemann Yves , Koslowski Michael , Huber Christoph , Türeci Özlem , Sahin Ugur
Published: March 2023

PDF file - 1.8 MB
Supplementary Table 1 from Adipokines Linking Obesity with Colorectal Cancer Risk in Postmenopausal Women
Authors: Ho Gloria Y.F. , Wang Tao , Gunter Marc J. , Strickler Howard D. , Cushman Mary , Kaplan Robert C. , Wassertheil-Smoller Sylvia , Xue Xiaonan , Rajpathak Swapnil N. , Chlebowski Rowan T. , Vitolins Mara Z. , Scherer Philipp E. , Rohan Thomas E.
Published: March 2023

PDF file - 66K, Median levels of adipokines by colorectal cancer risk factors in subcohort subjects from the WHI-OS Cohort,1994-2004
Supplementary Figure 4 from CD24 Is an Effector of HIF-1–Driven Primary Tumor Growth and Metastasis
Authors: Thomas Shibu , Harding Michael A. , Smith Steven C. , Overdevest Jonathan B. , Nitz Matthew D. , Frierson Henry F. , Tomlins Scott A. , Kristiansen Glen , Theodorescu Dan
Published: March 2023

PDF file - 88K, Western blot and ChIP for HIF-1beta in human bladder cancer cells
Supplementary Methods, Tables 1-6, Figure Legends 1-4 from CXCR6 Upregulation Contributes to a Proinflammatory Tumor Microenvironment That Drives Metastasis and Poor Patient Outcomes in Hepatocellular Carcinoma
Authors: Gao Qiang , Zhao Ying-Jun , Wang Xiao-Ying , Qiu Shuang-Jian , Shi Ying-Hong , Sun Jian , Yi Yong , Shi Jie-Yi , Shi Guo-Ming , Ding Zhen-Bin , Xiao Yong-Sheng , Zhao Zhong-Hua , Zhou Jian , He Xiang-Huo , Fan Jia
Published: March 2023

PDF file - 229K
Supplementary Figure 4 from CXCR6 Upregulation Contributes to a Proinflammatory Tumor Microenvironment That Drives Metastasis and Poor Patient Outcomes in Hepatocellular Carcinoma
Authors: Gao Qiang , Zhao Ying-Jun , Wang Xiao-Ying , Qiu Shuang-Jian , Shi Ying-Hong , Sun Jian , Yi Yong , Shi Jie-Yi , Shi Guo-Ming , Ding Zhen-Bin , Xiao Yong-Sheng , Zhao Zhong-Hua , Zhou Jian , He Xiang-Huo , Fan Jia
Published: March 2023

PDF file - 1.6MB, The effects CXCR6-konckdown on expression of epithelial-to-mesenchymal transition markers and signaling molecules of hepatoma cells
Supplementary Methods from In Vivo Imaging of Drug-Induced Mitochondrial Outer Membrane Permeabilization at Single-Cell Resolution
Authors: Earley Sarah , Vinegoni Claudio , Dunham Joshua , Gorbatov Rostic , Feruglio Paolo Fumene , Weissleder Ralph
Published: March 2023

PDF file, 118KB, Histology and Image processing information.
Supplementary Figure 5 from MLK3 Regulates Paxillin Phosphorylation in Chemokine-Mediated Breast Cancer Cell Migration and Invasion to Drive Metastasis
Authors: Chen Jian , Gallo Kathleen A.
Published: March 2023

PDF file - 47K, Maintenance of MLK3 silencing in MDA-MB-231 primary tumors
Supplementary Figure 2 from MLK3 Regulates Paxillin Phosphorylation in Chemokine-Mediated Breast Cancer Cell Migration and Invasion to Drive Metastasis
Authors: Chen Jian , Gallo Kathleen A.
Published: March 2023

PDF file - 46K, Effects of MLK and MAPK inhibitors on Ser 178 paxillin phosphorylation
Supplementary Figure 5 from Breast Cancer Cell Uptake of the Inflammatory Mediator Neutrophil Elastase Triggers an Anticancer Adaptive Immune Response
Authors: Mittendorf Elizabeth A. , Alatrash Gheath , Qiao Na , Wu Yun , Sukhumalchandra Pariya , St. John Lisa S. , Philips Anne V. , Xiao Haile , Zhang Mao , Ruisaard Kathryn , Clise-Dwyer Karen , Lu Sijie , Molldrem Jeffrey J.
Published: March 2023

PDF file - 99K, Data showing antigen specificity of CCNE-CTL used in cytotoxicity assays
Supplementary Figure 3 from Opposing Effects of Pigment Epithelium–Derived Factor on Breast Cancer Cell versus Neuronal Survival: Implication for Brain Metastasis and Metastasis-Induced Brain Damage
Authors: Fitzgerald Daniel P. , Subramanian Preeti , Deshpande Monika , Graves Christian , Gordon Ira , Qian Yongzhen , Snitkovsky Yeva , Liewehr David J. , Steinberg Seth M. , Paltán-Ortiz José D. , Herman Mary M. , Camphausen Kevin , Palmieri Diane , Becerra S. Patricia , Steeg Patricia S.
Published: March 2023

PDF file - 1.3MB
Supplementary Figure 4 from Global Quantitative Phosphoproteome Analysis of Human Tumor Xenografts Treated with a CD44 Antagonist
Authors: Weigand Stefan , Herting Frank , Maisel Daniela , Nopora Adam , Voss Edgar , Schaab Christoph , Klammer Martin , Tebbe Andreas
Published: March 2023

PDF file - 105K, Background optimization of p-ERK1/2-ELISA by use of alternative blocking buffers
Supplementary Figure 1 from Opposing Effects of Pigment Epithelium–Derived Factor on Breast Cancer Cell versus Neuronal Survival: Implication for Brain Metastasis and Metastasis-Induced Brain Damage
Authors: Fitzgerald Daniel P. , Subramanian Preeti , Deshpande Monika , Graves Christian , Gordon Ira , Qian Yongzhen , Snitkovsky Yeva , Liewehr David J. , Steinberg Seth M. , Paltán-Ortiz José D. , Herman Mary M. , Camphausen Kevin , Palmieri Diane , Becerra S. Patricia , Steeg Patricia S.
Published: March 2023

PDF file - 954K
Supplementary Figure 3 from Alternate Splicing of the p53 Inhibitor HDMX Offers a Superior Prognostic Biomarker than p53 Mutation in Human Cancer
Authors: Lenos Kristiaan , Grawenda Anna M. , Lodder Kirsten , Kuijjer Marieke L. , Teunisse Amina F.A.S. , Repapi Emmanouela , Grochola Lukasz F. , Bartel Frank , Hogendoorn Pancras C.W. , Wuerl Peter , Taubert Helge , Cleton-Jansen Anne-Marie , Bond Gareth L. , Jochemsen Aart G.
Published: March 2023

PDF file - 51K, High HDMX-S/HDMX-FL ratios, but not p53 gene mutation associates with worse outcome in soft tissue sarcoma patients
Supplementary Figure 1 from Alternate Splicing of the p53 Inhibitor HDMX Offers a Superior Prognostic Biomarker than p53 Mutation in Human Cancer
Authors: Lenos Kristiaan , Grawenda Anna M. , Lodder Kirsten , Kuijjer Marieke L. , Teunisse Amina F.A.S. , Repapi Emmanouela , Grochola Lukasz F. , Bartel Frank , Hogendoorn Pancras C.W. , Wuerl Peter , Taubert Helge , Cleton-Jansen Anne-Marie , Bond Gareth L. , Jochemsen Aart G.
Published: March 2023

PDF file - 565K, Nutlin-3 response in osteosarcoma cell lines. Treated osteosarcoma cells were analyzed by Western blotting and FACS analysis
Supplementary Methods, Figure Legends 1-7 from Modulation of Glucose Metabolism by CD44 Contributes to Antioxidant Status and Drug Resistance in Cancer Cells
Authors: Tamada Mayumi , Nagano Osamu , Tateyama Seiji , Ohmura Mitsuyo , Yae Toshifumi , Ishimoto Takatsugu , Sugihara Eiji , Onishi Nobuyuki , Yamamoto Takehiro , Yanagawa Hiroshi , Suematsu Makoto , Saya Hideyuki
Published: March 2023

PDF file - 154K
Supplementary Figure 4 from Modulation of Glucose Metabolism by CD44 Contributes to Antioxidant Status and Drug Resistance in Cancer Cells
Authors: Tamada Mayumi , Nagano Osamu , Tateyama Seiji , Ohmura Mitsuyo , Yae Toshifumi , Ishimoto Takatsugu , Sugihara Eiji , Onishi Nobuyuki , Yamamoto Takehiro , Yanagawa Hiroshi , Suematsu Makoto , Saya Hideyuki
Published: March 2023

PDF file - 329K
Supplementary Table 2 from Differentially Expressed Genes Regulating the Progression of Ductal Carcinoma In Situ to Invasive Breast Cancer
Authors: Lee Sangjun , Stewart Sheila , Nagtegaal Iris , Luo Jingqin , Wu Yun , Colditz Graham , Medina Dan , Allred D. Craig
Published: March 2023

XLS file - 85K, Supervised Comparisions of 5 independent groups to identify differentially expressed genes that may be associated with progression of DCIS to IBC
Supplementary Legends for Figures 1-4, Tables 1-4 from Differentially Expressed Genes Regulating the Progression of Ductal Carcinoma In Situ to Invasive Breast Cancer
Authors: Lee Sangjun , Stewart Sheila , Nagtegaal Iris , Luo Jingqin , Wu Yun , Colditz Graham , Medina Dan , Allred D. Craig
Published: March 2023

PDF file - 74K
Supplementary Tables 1-2 from Urinary Estrogens and Estrogen Metabolites and Subsequent Risk of Breast Cancer among Premenopausal Women
Authors: Eliassen A. Heather , Spiegelman Donna , Xu Xia , Keefer Larry K. , Veenstra Timothy D. , Barbieri Robert L. , Willett Walter C. , Hankinson Susan E. , Ziegler Regina G.
Published: March 2023

PDF file - 79K
Supplementary Figure 4 from Differentially Expressed Genes Regulating the Progression of Ductal Carcinoma In Situ to Invasive Breast Cancer
Authors: Lee Sangjun , Stewart Sheila , Nagtegaal Iris , Luo Jingqin , Wu Yun , Colditz Graham , Medina Dan , Allred D. Craig
Published: March 2023

PDF file - 154K, Representative photographs of DCIS in MIND xenografts of DCIS.COM immunostained with antibodies recognizing myoepithelial cells
Supplementary Methods, Figures 1-7 from Mammary Tumor Regression Elicited by Wnt Signaling Inhibitor Requires IGFBP5
Authors: Liu Bob Y. , Soloviev Irina , Huang XiaoDong , Chang Peter , Ernst James A. , Polakis Paul , Sakanaka Chie
Published: March 2023

PDF file - 717K
Supplementary Figure 3 from Differentially Expressed Genes Regulating the Progression of Ductal Carcinoma In Situ to Invasive Breast Cancer
Authors: Lee Sangjun , Stewart Sheila , Nagtegaal Iris , Luo Jingqin , Wu Yun , Colditz Graham , Medina Dan , Allred D. Craig
Published: March 2023

PDF file - 118K, In Vitro Results (impact of gene knockdown on the ability of cells to grow)
Supplementary Table 1 from Endothelial Expression of TNF Receptor-1 Generates a Proapoptotic Signal Inhibited by Integrin α6β1 in Glioblastoma
Authors: Huang Ping , Rani M.R. Sandhya , Ahluwalia Manmeet S. , Bae Eunnyung , Prayson Richard A. , Weil Robert J. , Nowacki Amy S. , Hedayat Hirad , Sloan Andrew E. , Lathia Justin D. , Rich Jeremy N. , Tipps Russell , Gladson Candece L.
Published: March 2023

PDF file - 71K, Increased Expression of TNFalpha, TNF-R1 and TNF-R2 in the ECs in Untreated GBM
Supplementary Figure 3 from Activation of Thermogenesis in Brown Adipose Tissue and Dysregulated Lipid Metabolism Associated with Cancer Cachexia in Mice
Authors: Tsoli Maria , Moore Melissa , Burg Dominic , Painter Arran , Taylor Ryland , Lockie Sarah H. , Turner Nigel , Warren Alessandra , Cooney Greg , Oldfield Brian , Clarke Stephen , Robertson Graham
Published: March 2023

PDF file - 178K, Expression of genes involved in lipolysis and thermogenesis in animals bearing the non-cachectic C26 tumor
Supplementary Figure 5 from Endothelial Expression of TNF Receptor-1 Generates a Proapoptotic Signal Inhibited by Integrin α6β1 in Glioblastoma
Authors: Huang Ping , Rani M.R. Sandhya , Ahluwalia Manmeet S. , Bae Eunnyung , Prayson Richard A. , Weil Robert J. , Nowacki Amy S. , Hedayat Hirad , Sloan Andrew E. , Lathia Justin D. , Rich Jeremy N. , Tipps Russell , Gladson Candece L.
Published: March 2023

PDF file - 972K, Percent of ECs expressing integrin alpha 6 beta 1 versus integrin alpha 6 beta 4.
Supplementary Figure 2 from Endothelial Expression of TNF Receptor-1 Generates a Proapoptotic Signal Inhibited by Integrin α6β1 in Glioblastoma
Authors: Huang Ping , Rani M.R. Sandhya , Ahluwalia Manmeet S. , Bae Eunnyung , Prayson Richard A. , Weil Robert J. , Nowacki Amy S. , Hedayat Hirad , Sloan Andrew E. , Lathia Justin D. , Rich Jeremy N. , Tipps Russell , Gladson Candece L.
Published: March 2023

PDF file - 695K, Significantly increased mRNA Expression of TNF-R1 and TNF-R2 in GBM as compared to normal brain
Supplementary Methods, Figures 1-7, Tables 1-7 from Hyaluronan Synthase HAS2 Promotes Tumor Progression in Bone by Stimulating the Interaction of Breast Cancer Stem–Like Cells with Macrophages and Stromal Cells
Authors: Okuda Hiroshi , Kobayashi Aya , Xia Bo , Watabe Misako , Pai Sudha K. , Hirota Shigeru , Xing Fei , Liu Wen , Pandey Puspa R. , Fukuda Koji , Modur Vishnu , Ghosh Arnab , Wilber Andrew , Watabe Kounosuke
Published: March 2023

PDF file - 2.6MB
Supplementary Table 2 from Circulating Insulin-Like Growth Factors and IGF-Binding Proteins in PSA-Detected Prostate Cancer: The Large Case–Control Study ProtecT
Authors: Rowlands Mari-Anne , Holly Jeff M.P. , Gunnell David , Donovan Jenny , Lane J. Athene , Hamdy Freddie , Neal David E. , Oliver Steven , Smith George Davey , Martin Richard M.
Published: March 2023

PDF file - 83K
Supplementary Figure Legends 1-4 from A Dynamic Inflammatory Cytokine Network in the Human Ovarian Cancer Microenvironment
Authors: Kulbe Hagen , Chakravarty Probir , Leinster D. Andrew , Charles Kellie A. , Kwong Joseph , Thompson Richard G. , Coward Jermaine I. , Schioppa Tiziana , Robinson Stephen C. , Gallagher William M. , Galletta Laura , Salako Michael A. , Smyth John F. , Hagemann Thorsten , Brennan Donal J. , Bowtell David D. , Balkwill Frances R.
Published: March 2023

PDF file - 83K
Supplementary Figure 4 from A Dynamic Inflammatory Cytokine Network in the Human Ovarian Cancer Microenvironment
Authors: Kulbe Hagen , Chakravarty Probir , Leinster D. Andrew , Charles Kellie A. , Kwong Joseph , Thompson Richard G. , Coward Jermaine I. , Schioppa Tiziana , Robinson Stephen C. , Gallagher William M. , Galletta Laura , Salako Michael A. , Smyth John F. , Hagemann Thorsten , Brennan Donal J. , Bowtell David D. , Balkwill Frances R.
Published: March 2023

PDF file - 4.3MB
Supplementary Figure 3 from A Dynamic Inflammatory Cytokine Network in the Human Ovarian Cancer Microenvironment
Authors: Kulbe Hagen , Chakravarty Probir , Leinster D. Andrew , Charles Kellie A. , Kwong Joseph , Thompson Richard G. , Coward Jermaine I. , Schioppa Tiziana , Robinson Stephen C. , Gallagher William M. , Galletta Laura , Salako Michael A. , Smyth John F. , Hagemann Thorsten , Brennan Donal J. , Bowtell David D. , Balkwill Frances R.
Published: March 2023

PDF file - 1MB
Supplementary Figure 4 from TMEM16A Induces MAPK and Contributes Directly to Tumorigenesis and Cancer Progression
Authors: Duvvuri Umamaheswar , Shiwarski Daniel J. , Xiao Dong , Bertrand Carol , Huang Xin , Edinger Robert S. , Rock Jason R. , Harfe Brian D. , Henson Brian J. , Kunzelmann Karl , Schreiber Rainer , Seethala Raja S. , Egloff Ann Marie , Chen Xing , Lui Vivian W. , Grandis Jennifer R. , Gollin Susanne M.
Published: March 2023

PDF file - 407K, TMEM16A overexpression promotes cell proliferation in HEK-293T cells. TMEM16A overexpression induced cellular proliferation (*P<0.05). A representative immunoblot is shown (A). TMEM16A confers anchorage-independent viability in keratinocytes. Spontaneously immortalized oral keratinocytes were transduced with TMEM16A expressing virus or control (VC) and anchorage independent viability was evaluated. TMEM16A overexpression increases viability in anchorage independent conditions (B, p<0.05). TMEM16A knockdown induced growth retardation in SCCHN cells Cal33 and PCI-15B (C). Spontaneously immortalized wild-type MEFs expressing H-rasQ61L were transduced with retroviruses encoding TMEM16A or a hypo-morphic version of TMEM16A (TMEM16A-K610A). Focus formation was determined by crystal violet staining. TMEM16A overexpression induces a 3-fold increase in foci formation, the experiment was repeated several times in triplicate (D, p<0.05). Clonogenic assay was used to demonstrate increased colony formation after TMEM16A overexpression in T24, UM-SCC1 and immortalized keratinocytes (E).
Supplementary Figure 2 from TMEM16A Induces MAPK and Contributes Directly to Tumorigenesis and Cancer Progression
Authors: Duvvuri Umamaheswar , Shiwarski Daniel J. , Xiao Dong , Bertrand Carol , Huang Xin , Edinger Robert S. , Rock Jason R. , Harfe Brian D. , Henson Brian J. , Kunzelmann Karl , Schreiber Rainer , Seethala Raja S. , Egloff Ann Marie , Chen Xing , Lui Vivian W. , Grandis Jennifer R. , Gollin Susanne M.
Published: March 2023

PDF file - 72K, Patient survival is not impacted by TMEM16A amplification status. Disease-specific and overall survival of the cohort of SCCHN patients was not significantly correlated with TMEM16A amplification (A, B).
Supplementary Figure 7 from A Novel Tankyrase Inhibitor Decreases Canonical Wnt Signaling in Colon Carcinoma Cells and Reduces Tumor Growth in Conditional APC Mutant Mice
Authors: Waaler Jo , Machon Ondrej , Tumova Lucie , Dinh Huyen , Korinek Vladimir , Wilson Steven Ray , Paulsen Jan Erik , Pedersen Nina Marie , Eide Tor J. , Machonova Olga , Gradl Dietmar , Voronkov Andrey , von Kries Jens Peter , Krauss Stefan
Published: March 2023

PDF file - Human liver microsome (HLM) test of JW55 (A), weight measurement of ApcCKO/CKOLgr5-CreERT2+ mice treated with JW55 or vehicle (B) and an example on quantification of tumor number and area using Ellipse software (C).
Supplementary Table 1 from Mammalian Sterile 20–like Kinase 1 Suppresses Lymphoma Development by Promoting Faithful Chromosome Segregation
Authors: Kim Tae-Shin , Lee Da-Hye , Kim Sang Kyum , Shin So Youn , Seo Eul-Ju , Lim Dae-Sik
Published: March 2023

PDF file - 19K, Characteristics of ENU-treated moribund mice
Supplementary Figure 5 from A Novel Tankyrase Inhibitor Decreases Canonical Wnt Signaling in Colon Carcinoma Cells and Reduces Tumor Growth in Conditional APC Mutant Mice
Authors: Waaler Jo , Machon Ondrej , Tumova Lucie , Dinh Huyen , Korinek Vladimir , Wilson Steven Ray , Paulsen Jan Erik , Pedersen Nina Marie , Eide Tor J. , Machonova Olga , Gradl Dietmar , Voronkov Andrey , von Kries Jens Peter , Krauss Stefan
Published: March 2023

PDF file - 139K, A fluorescence polarization competition assay was performed using a fluorescein-tagged analog of XAV939 (XAV939-Fluorescein) versus JW55 and a structurally similar but inactive analog of JW55.
Supplementary Figure 4 from A Novel Tankyrase Inhibitor Decreases Canonical Wnt Signaling in Colon Carcinoma Cells and Reduces Tumor Growth in Conditional APC Mutant Mice
Authors: Waaler Jo , Machon Ondrej , Tumova Lucie , Dinh Huyen , Korinek Vladimir , Wilson Steven Ray , Paulsen Jan Erik , Pedersen Nina Marie , Eide Tor J. , Machonova Olga , Gradl Dietmar , Voronkov Andrey , von Kries Jens Peter , Krauss Stefan
Published: March 2023

PDF file - 171K, Superposition of JW55 (docking) and IWR-1 (X-ray, PDB code 3UA9) in the PARP domain of TNKS2 show similar binding characteristics.
Supplementary Methods, Table 1, Figure Legends 1-7 from Melanoma Cells Inhibit Natural Killer Cell Function by Modulating the Expression of Activating Receptors and Cytolytic Activity
Authors: Pietra Gabriella , Manzini Claudia , Rivara Silvia , Vitale Massimo , Cantoni Claudia , Petretto Andrea , Balsamo Mirna , Conte Romana , Benelli Roberto , Minghelli Simona , Solari Nicola , Gualco Marina , Queirolo Paola , Moretta Lorenzo , Mingari Maria Cristina
Published: March 2023

PDF file - 872K
Supplementary Figure 4 from Melanoma Cells Inhibit Natural Killer Cell Function by Modulating the Expression of Activating Receptors and Cytolytic Activity
Authors: Pietra Gabriella , Manzini Claudia , Rivara Silvia , Vitale Massimo , Cantoni Claudia , Petretto Andrea , Balsamo Mirna , Conte Romana , Benelli Roberto , Minghelli Simona , Solari Nicola , Gualco Marina , Queirolo Paola , Moretta Lorenzo , Mingari Maria Cristina
Published: March 2023

PDF file - 68K
Supplementary Figure 3 from Melanoma Cells Inhibit Natural Killer Cell Function by Modulating the Expression of Activating Receptors and Cytolytic Activity
Authors: Pietra Gabriella , Manzini Claudia , Rivara Silvia , Vitale Massimo , Cantoni Claudia , Petretto Andrea , Balsamo Mirna , Conte Romana , Benelli Roberto , Minghelli Simona , Solari Nicola , Gualco Marina , Queirolo Paola , Moretta Lorenzo , Mingari Maria Cristina
Published: March 2023

PDF file - 64K
Supplementary Figure 2 from Melanoma Cells Inhibit Natural Killer Cell Function by Modulating the Expression of Activating Receptors and Cytolytic Activity
Authors: Pietra Gabriella , Manzini Claudia , Rivara Silvia , Vitale Massimo , Cantoni Claudia , Petretto Andrea , Balsamo Mirna , Conte Romana , Benelli Roberto , Minghelli Simona , Solari Nicola , Gualco Marina , Queirolo Paola , Moretta Lorenzo , Mingari Maria Cristina
Published: March 2023

PDF file - 96K
Supplementary Figure 3 from miR-103/107 Promote Metastasis of Colorectal Cancer by Targeting the Metastasis Suppressors DAPK and KLF4
Authors: Chen Hsin-Yi , Lin Yu-Min , Chung Hsiang-Ching , Lang Yaw-Dong , Lin Ching-Jung , Huang John , Wang Wei-Chi , Lin Feng-Mao , Chen Zhen , Huang Hsien-Da , Shyy John Y.-J. , Liang Jin-Tung , Chen Ruey-Hwa
Published: March 2023

PDF file - 51K, Re-expression of DAPK and KLF4 suppresses miR-103/107-induced migration and invasion in normoxia
Supplementary Figure 2 from miR-103/107 Promote Metastasis of Colorectal Cancer by Targeting the Metastasis Suppressors DAPK and KLF4
Authors: Chen Hsin-Yi , Lin Yu-Min , Chung Hsiang-Ching , Lang Yaw-Dong , Lin Ching-Jung , Huang John , Wang Wei-Chi , Lin Feng-Mao , Chen Zhen , Huang Hsien-Da , Shyy John Y.-J. , Liang Jin-Tung , Chen Ruey-Hwa
Published: March 2023

PDF file - 28K, Reporter analysis for examining the efficacies of miR-103 and miR-107 and their antagomirs
Supplementary Figure Legends 1-5 from Hedgehog Signaling Inhibition Blocks Growth of Resistant Tumors through Effects on Tumor Microenvironment
Authors: Heller Emanuela , Hurchla Michelle A. , Xiang Jingyu , Su Xinming , Chen Sara , Schneider Jochen , Joeng Kyu-Sang , Vidal Marcos , Goldberg Leah , Deng Hongju , Hornick Mary C. , Prior Julie L. , Piwnica-Worms David , Long Fanxin , Cagan Ross , Weilbaecher Katherine N.
Published: March 2023

PDF file - 100K
Supplementary Figure 2 from Jab1/CSN5 Negatively Regulates p27 and Plays a Role in the Pathogenesis of Nasopharyngeal Carcinoma
Authors: Pan Yunbao , Zhang Qingxiu , Tian Ling , Wang Xin , Fan Xiaohang , Zhang Huizhong , Claret Francois X. , Yang Huiling
Published: March 2023

PDF file - 137K
Supplementary Figure 3 from Hedgehog Signaling Inhibition Blocks Growth of Resistant Tumors through Effects on Tumor Microenvironment
Authors: Heller Emanuela , Hurchla Michelle A. , Xiang Jingyu , Su Xinming , Chen Sara , Schneider Jochen , Joeng Kyu-Sang , Vidal Marcos , Goldberg Leah , Deng Hongju , Hornick Mary C. , Prior Julie L. , Piwnica-Worms David , Long Fanxin , Cagan Ross , Weilbaecher Katherine N.
Published: March 2023

PDF file - 220K
Supplementary Figure 1 from Hedgehog Signaling Inhibition Blocks Growth of Resistant Tumors through Effects on Tumor Microenvironment
Authors: Heller Emanuela , Hurchla Michelle A. , Xiang Jingyu , Su Xinming , Chen Sara , Schneider Jochen , Joeng Kyu-Sang , Vidal Marcos , Goldberg Leah , Deng Hongju , Hornick Mary C. , Prior Julie L. , Piwnica-Worms David , Long Fanxin , Cagan Ross , Weilbaecher Katherine N.
Published: March 2023

PDf file - 4.9MB
Supplementary Table 3 from Definition of Genetic Events Directing the Development of Distinct Types of Brain Tumors from Postnatal Neural Stem/Progenitor Cells
Authors: Hertwig Falk , Meyer Katharina , Braun Sebastian , Ek Sara , Spang Rainer , Pfenninger Cosima V. , Artner Isabella , Prost Gaëlle , Chen Xinbin , Biegel Jaclyn A. , Judkins Alexander R. , Englund Elisabet , Nuber Ulrike A.
Published: March 2023

XLS file - 46K, ER stress relation of Group A genes (more highly expressed in AT/RT-like cells as compared to glioma and PNET cells).
Supplementary Tables 1-2, Figures 1-7 from Extracellular Matrix Protein CCN1 Limits Oncolytic Efficacy in Glioma
Authors: Haseley Amy , Boone Sean , Wojton Jeffrey , Yu Lianbo , Yoo Ji Young , Yu Jianhua , Kurozumi Kazuhiko , Glorioso Joseph C. , Caligiuri Michael A. , Kaur Balveen
Published: March 2023

PDF file - 441K
Supplementary Figure 2 from RANK Induces Epithelial–Mesenchymal Transition and Stemness in Human Mammary Epithelial Cells and Promotes Tumorigenesis and Metastasis
Authors: Palafox Marta , Ferrer Irene , Pellegrini Pasquale , Vila Sergi , Hernandez-Ortega Sara , Urruticoechea Ander , Climent Fina , Soler Maria Teresa , Muñoz Purificación , Viñals Francesc , Tometsko Mark , Branstetter Dan , Dougall William C. , González-Suárez Eva
Published: March 2023

PDF file - 113K, RANK expression induces EMT in MCF10A and in HMECS immortalized with telomerase
Supplementary Table 1 from Frequent PVT1 Rearrangement and Novel Chimeric Genes PVT1-NBEA and PVT1-WWOX Occur in Multiple Myeloma with 8q24 Abnormality
Authors: Nagoshi Hisao , Taki Tomohiko , Hanamura Ichiro , Nitta Masakazu , Otsuki Takemi , Nishida Kazuhiro , Okuda Keiko , Sakamoto Natsumi , Kobayashi Satoru , Yamamoto-Sugitani Mio , Tsutsumi Yasuhiko , Kobayashi Tsutomu , Matsumoto Yosuke , Horiike Shigeo , Kuroda Junya , Taniwaki Masafumi
Published: March 2023

PDF file - 122K, Findings of interphase FISH signal patterns
Supplementary Figure Legends 1-6 from Frequent PVT1 Rearrangement and Novel Chimeric Genes PVT1-NBEA and PVT1-WWOX Occur in Multiple Myeloma with 8q24 Abnormality
Authors: Nagoshi Hisao , Taki Tomohiko , Hanamura Ichiro , Nitta Masakazu , Otsuki Takemi , Nishida Kazuhiro , Okuda Keiko , Sakamoto Natsumi , Kobayashi Satoru , Yamamoto-Sugitani Mio , Tsutsumi Yasuhiko , Kobayashi Tsutomu , Matsumoto Yosuke , Horiike Shigeo , Kuroda Junya , Taniwaki Masafumi
Published: March 2023

PDF file - 195K
Supplementary Figure 6 from Frequent PVT1 Rearrangement and Novel Chimeric Genes PVT1-NBEA and PVT1-WWOX Occur in Multiple Myeloma with 8q24 Abnormality
Authors: Nagoshi Hisao , Taki Tomohiko , Hanamura Ichiro , Nitta Masakazu , Otsuki Takemi , Nishida Kazuhiro , Okuda Keiko , Sakamoto Natsumi , Kobayashi Satoru , Yamamoto-Sugitani Mio , Tsutsumi Yasuhiko , Kobayashi Tsutomu , Matsumoto Yosuke , Horiike Shigeo , Kuroda Junya , Taniwaki Masafumi
Published: March 2023

PDF file - 91K, MYC and PVT1 expression in cell lines and normal lymphocytes
Supplementary Figure 5 from Frequent PVT1 Rearrangement and Novel Chimeric Genes PVT1-NBEA and PVT1-WWOX Occur in Multiple Myeloma with 8q24 Abnormality
Authors: Nagoshi Hisao , Taki Tomohiko , Hanamura Ichiro , Nitta Masakazu , Otsuki Takemi , Nishida Kazuhiro , Okuda Keiko , Sakamoto Natsumi , Kobayashi Satoru , Yamamoto-Sugitani Mio , Tsutsumi Yasuhiko , Kobayashi Tsutomu , Matsumoto Yosuke , Horiike Shigeo , Kuroda Junya , Taniwaki Masafumi
Published: March 2023

PDF file - 108K, Knockdown of PVT1-NBEA chimeric transcript using siRNA
Supplementary Figure 4 from Stromal Progenitor Cells from Endogenous Adipose Tissue Contribute to Pericytes and Adipocytes That Populate the Tumor Microenvironment
Authors: Zhang Yan , Daquinag Alexes C. , Amaya-Manzanares Felipe , Sirin Olga , Tseng Chieh , Kolonin Mikhail G.
Published: March 2023

PDF file - 134K, Populations of GFP+ and RFP+ cells in mouse tissues and their contribution to tumors
Supplementary Table 3 from Stress-Regulated Transcription Factor ATF4 Promotes Neoplastic Transformation by Suppressing Expression of the INK4a/ARF Cell Senescence Factors
Authors: Horiguchi Michiko , Koyanagi Satoru , Okamoto Akinori , Suzuki Satoshi O. , Matsunaga Naoya , Ohdo Shigehiro
Published: March 2023

PDF file - 93K
Supplementary Figures 1-5 from Stress-Regulated Transcription Factor ATF4 Promotes Neoplastic Transformation by Suppressing Expression of the INK4a/ARF Cell Senescence Factors
Authors: Horiguchi Michiko , Koyanagi Satoru , Okamoto Akinori , Suzuki Satoshi O. , Matsunaga Naoya , Ohdo Shigehiro
Published: March 2023

Supplementary Figures 1-5 from Stress-Regulated Transcription Factor ATF4 Promotes Neoplastic Transformation by Suppressing Expression of the INK4a/ARF Cell Senescence Factors
Supplementary Figure 1 from NFAT1 Supports Tumor-induced Anergy of CD4+ T Cells
Authors: Abe Brian T. , Shin Daniel S. , Mocholi Enric , Macian Fernando
Published: March 2023

PDF file - 656K, NFAT1 supports EG7 thymoma-induced anergy in antigen-specific CD4+ T cells in vivo
Supplementary Figure 7 from Neuropilin-1 Stimulates Tumor Growth by Increasing Fibronectin Fibril Assembly in the Tumor Microenvironment
Authors: Yaqoob Usman , Cao Sheng , Shergill Uday , Jagavelu Kumaravelu , Geng Zhimin , Yin Meng , de Assuncao Thiago M. , Cao Ying , Szabolcs Anna , Thorgeirsson Snorri , Schwartz Martin , Yang Ju Dong , Ehman Richard , Roberts Lewis , Mukhopadhyay Debabrata , Shah Vijay H.
Published: March 2023

PDF file - 161K, GIPC is required for FN fibril assembly and forms complexes with NRP-1, FN, integrin and c-Abl in co-immunoprecipitation assays
Supplementary Figure 4 from Neuropilin-1 Stimulates Tumor Growth by Increasing Fibronectin Fibril Assembly in the Tumor Microenvironment
Authors: Yaqoob Usman , Cao Sheng , Shergill Uday , Jagavelu Kumaravelu , Geng Zhimin , Yin Meng , de Assuncao Thiago M. , Cao Ying , Szabolcs Anna , Thorgeirsson Snorri , Schwartz Martin , Yang Ju Dong , Ehman Richard , Roberts Lewis , Mukhopadhyay Debabrata , Shah Vijay H.
Published: March 2023

PDF file - 190K, NRP-2 is not required for FN fibril assembly and other NRP-1 receptors such as KDR and PlexinA1 are not expressed in CAF
Supplementary Figures 1-13, Methods from ATM-Mediated DNA Damage Signals Mediate Immune Escape through Integrin-αvβ3–Dependent Mechanisms
Authors: Jinushi Masahisa , Chiba Shigeki , Baghdadi Muhammad , Kinoshita Ichiro , Dosaka-Akita Hirotoshi , Ito Koyu , Yoshiyama Hironori , Yagita Hideo , Uede Toshimitsu , Takaoka Akinori
Published: March 2023

PDF file - 343K
Supplementary Figure 2 from Neuropilin-1 Stimulates Tumor Growth by Increasing Fibronectin Fibril Assembly in the Tumor Microenvironment
Authors: Yaqoob Usman , Cao Sheng , Shergill Uday , Jagavelu Kumaravelu , Geng Zhimin , Yin Meng , de Assuncao Thiago M. , Cao Ying , Szabolcs Anna , Thorgeirsson Snorri , Schwartz Martin , Yang Ju Dong , Ehman Richard , Roberts Lewis , Mukhopadhyay Debabrata , Shah Vijay H.
Published: March 2023

PDF file - 134K, Tumor co-implantation was done on wild type mice and tumor sections were immunostained for PECAM and PDGFRbeta
Supplementary Figure 4 from A Positive Feedback Signaling Loop between ATM and the Vitamin D Receptor Is Critical for Cancer Chemoprevention by Vitamin D
Authors: Ting Huei-Ju , Yasmin-Karim Sayeda , Yan Shian-Jang , Hsu Jong-Wei , Lin Tzu-Hua , Zeng Weisi , Messing James , Sheu Tzong-Jeng , Bao Bo-Ying , Li Willis X. , Messing Edward , Lee Yi-Fen
Published: March 2023

PDF file - 234K
Supplementary Figure 4 from Targeting the EWSR1-FLI1 Oncogene-Induced Protein Kinase PKC-β Abolishes Ewing Sarcoma Growth
Authors: Surdez Didier , Benetkiewicz Magdalena , Perrin Virginie , Han Zhi-Yan , Pierron Gaëlle , Ballet Stelly , Lamoureux François , Rédini Françoise , Decouvelaere Anne-Valérie , Daudigeos-Dubus Estelle , Geoerger Birgit , de Pinieux Gonzague , Delattre Olivier , Tirode Franck
Published: March 2023

PDF file - 114K, Rescuing shRNAs Inhibition of PRKCB
Supplementary Figure Legends 1-7 from High-Throughput RNAi Screening Reveals Novel Regulators of Telomerase
Authors: Cerone Maria Antonietta , Burgess Darren J , Naceur-Lombardelli Cristina , Lord Christopher J. , Ashworth Alan
Published: March 2023

Supplementary Figure Legends 1-7 from High-Throughput RNAi Screening Reveals Novel Regulators of Telomerase
Supplementary Figure 1 from Metastatic Progression with Resistance to Aromatase Inhibitors Is Driven by the Steroid Receptor Coactivator SRC-1
Authors: McBryan Jean , Theissen Sarah M. , Byrne Christopher , Hughes Eamon , Cocchiglia Sinead , Sande Stephen , O'Hara Jane , Tibbitts Paul , Hill Arnold D.K. , Young Leonie S.
Published: March 2023

PDF file - 175K
Supplementary Table 3 from Candidate Pathways for Promoting Differentiation or Quiescence of Oligodendrocyte Progenitor-like Cells in Glioma
Authors: Dougherty Joseph D. , Fomchenko Elena I. , Akuffo Afua A. , Schmidt Eric , Helmy Karim Y. , Bazzoli Elena , Brennan Cameron W. , Holland Eric C. , Milosevic Ana
Published: March 2023

XLS file - 43K, Summary of all information for DorQ candidates Fold Change: Average fold of normal Olig2 cells vs all tumor samples. P-value: associated limma p-value with and without FDR. Allen ISH: Scoring on Allen Brain Atlas in situ hybridization patterns for a pattern consistent with expression in OPCs. S: Specific, E: Expressed in these cells and others, A: Absent, U: No signal (unscorable), N: Clearly not in OPCs. *Ttr has a pattern suggestive of choroid plexus, consistent with PDGFRA expression in choroid. Ratio Del/Dups - is the ratio of the number of human glioma samples with a deletion to those with duplications, as counted by RAE algorithm (N=216). % of tumors showing a deletion
Supplementary Materials and Methods from MEK Inhibition Leads to PI3K/AKT Activation by Relieving a Negative Feedback on ERBB Receptors
Authors: Turke Alexa B. , Song Youngchul , Costa Carlotta , Cook Rebecca , Arteaga Carlos L. , Asara John M. , Engelman Jeffrey A.
Published: March 2023

PDF file - 104K, Supplemental Materials and Methods include additional materials and methods and supporting references, and provides more detailed explanation of cell lines and cell culture reagents, antibodies, shRNA haripin constructs, and mass spectrometry protocol.
Supplementary Methods, Figures 1-7, Tables 1-3 from A Pharmacologic Inhibitor of the Protease Taspase1 Effectively Inhibits Breast and Brain Tumor Growth
Authors: Chen David Y. , Lee Yishan , Van Tine Brian A. , Searleman Adam C. , Westergard Todd D. , Liu Han , Tu Ho-Chou , Takeda Shugaku , Dong Yiyu , Piwnica-Worms David R. , Oh Kyoung J. , Korsmeyer Stanley J. , Hermone Ann , Gussio Richard , Shoemaker Robert H. , Cheng Emily H.-Y. , Hsieh James J.-D.
Published: March 2023

PDF file - 782K
Supplementary Figure 1 from Bone-Derived IGF Mediates Crosstalk between Bone and Breast Cancer Cells in Bony Metastases
Authors: Hiraga Toru , Myoui Akira , Hashimoto Nobuyuki , Sasaki Akira , Hata Kenji , Morita Yoshihiro , Yoshikawa Hideki , Rosen Clifford J. , Mundy Gregory R. , Yoneda Toshiyuki
Published: March 2023

PDF file - 172K, Effects of IGFIR knockdown in MDA-MB-231 cells on bone metastases. This figure shows the results of the experiments in which the effects of IGFIR knock-down in MDA-MB-231 cells using shRNA on bne metastasis were examined.
Supplementary Figure 1 from Sphingosine-1-Phosphate Produced by Sphingosine Kinase 1 Promotes Breast Cancer Progression by Stimulating Angiogenesis and Lymphangiogenesis
Authors: Nagahashi Masayuki , Ramachandran Subramaniam , Kim Eugene Y. , Allegood Jeremy C. , Rashid Omar M. , Yamada Akimitsu , Zhao Renping , Milstien Sheldon , Zhou Huiping , Spiegel Sarah , Takabe Kazuaki
Published: March 2023

PDF file - 763K, Circulating levels of SK1-I and S1P in plasma from na�ve BALB/c mice. Mice were treated with SK1-I (20 mg/kg) i.p. and plasma samples were taken at the indicated time point (n = 3). The levels of SK1-I (A) and S1P (B) were determined by LC-ESI-MS/MS, and means � SD are shown. *, P < 0.05 as compared to 0 hour time point.
Supplementary Figure 2 from Distinctive Features of the Differentiated Phenotype and Infiltration of Tumor-Reactive Lymphocytes in Clear Cell Renal Cell Carcinoma
Authors: Wang Qiong J. , Hanada Ken-ichi , Robbins Paul F. , Li Yong F. , Yang James C.
Published: March 2023

PDF file - 58K, HLA-class II expression of RCC tumor lines with or without CIITA transduction. Tumor lines were labeled with isotype control (open histograms) or anti-HLA DR Ab (filled histograms) and analyzed on FACSCantoII
Supplementary Table 7 from Multilevel Whole-Genome Analysis Reveals Candidate Biomarkers in Clear Cell Renal Cell Carcinoma
Authors: Girgis Andrew H. , Iakovlev Vladimir V. , Beheshti Ben , Bayani Jane , Squire Jeremy A. , Bui Anna , Mankaruos Marina , Youssef Youssef , Khalil Bishoy , Khella Heba , Pasic Maria , Yousef George M.
Published: March 2023

PDF file - 34K, microRNAs expressed concordantly with copy-number aberrations
Supplementary Table 6 from Multilevel Whole-Genome Analysis Reveals Candidate Biomarkers in Clear Cell Renal Cell Carcinoma
Authors: Girgis Andrew H. , Iakovlev Vladimir V. , Beheshti Ben , Bayani Jane , Squire Jeremy A. , Bui Anna , Mankaruos Marina , Youssef Youssef , Khalil Bishoy , Khella Heba , Pasic Maria , Yousef George M.
Published: March 2023

PDF file - 30K, Select genes significantly methylated in tumor versus normal kidney in regions associated with copy-number aberrations
Supplementary Figure 1 from Biomarkers of HPV in Head and Neck Squamous Cell Carcinoma
Authors: Liang Caihua , Marsit Carmen J. , McClean Michael D. , Nelson Heather H. , Christensen Brock C. , Haddad Robert I. , Clark John R. , Wein Richard O. , Grillone Gregory A. , Houseman E. Andres , Halec Gordana , Waterboer Tim , Pawlita Michael , Krane Jeffrey F. , Kelsey Karl T.
Published: March 2023

PDF file - 35K, ROC curves for HPV assays. AUC=Area under the Curve. P=0.024 from the DeLong's tests comprising the AUCs of E7 and DNA (MPG); P=0.05 comparing the AUCs of E7 and L1 (MS)
Supplementary Table 4 from Multilevel Whole-Genome Analysis Reveals Candidate Biomarkers in Clear Cell Renal Cell Carcinoma
Authors: Girgis Andrew H. , Iakovlev Vladimir V. , Beheshti Ben , Bayani Jane , Squire Jeremy A. , Bui Anna , Mankaruos Marina , Youssef Youssef , Khalil Bishoy , Khella Heba , Pasic Maria , Yousef George M.
Published: March 2023

PDF file - 127K, Significantly expressed genes in regions that are cytogenetically associated with copy-number aberrations in aberrant tumors compared to normal kidney as based by GSEA and integration of protein, miRNA and methylation data
Supplementary Table 2 from Multilevel Whole-Genome Analysis Reveals Candidate Biomarkers in Clear Cell Renal Cell Carcinoma
Authors: Girgis Andrew H. , Iakovlev Vladimir V. , Beheshti Ben , Bayani Jane , Squire Jeremy A. , Bui Anna , Mankaruos Marina , Youssef Youssef , Khalil Bishoy , Khella Heba , Pasic Maria , Yousef George M.
Published: March 2023

PDF file - 74K, Copy-number results in relation to results of previous studies
Supplementary Table 1 from Multilevel Whole-Genome Analysis Reveals Candidate Biomarkers in Clear Cell Renal Cell Carcinoma
Authors: Girgis Andrew H. , Iakovlev Vladimir V. , Beheshti Ben , Bayani Jane , Squire Jeremy A. , Bui Anna , Mankaruos Marina , Youssef Youssef , Khalil Bishoy , Khella Heba , Pasic Maria , Yousef George M.
Published: March 2023

PDF file - 28K, Broad regions of gains and losses in at least 5% of cases (n=154).
Supplementary Methods from Multilevel Whole-Genome Analysis Reveals Candidate Biomarkers in Clear Cell Renal Cell Carcinoma
Authors: Girgis Andrew H. , Iakovlev Vladimir V. , Beheshti Ben , Bayani Jane , Squire Jeremy A. , Bui Anna , Mankaruos Marina , Youssef Youssef , Khalil Bishoy , Khella Heba , Pasic Maria , Yousef George M.
Published: March 2023

Supplementary Methods from Multilevel Whole-Genome Analysis Reveals Candidate Biomarkers in Clear Cell Renal Cell Carcinoma
Supplementary Video 6 from Cathepsin B Inhibition Limits Bone Metastasis in Breast Cancer
Authors: Withana Nimali P. , Blum Galia , Sameni Mansoureh , Slaney Clare , Anbalagan Arulselvi , Olive Mary B. , Bidwell Bradley N. , Edgington Laura , Wang Ling , Moin Kamiar , Sloane Bonnie F. , Anderson Robin L. , Bogyo Matthew S. , Parker Belinda S.
Published: March 2023

AVI file - 4.7MB, Degradation of collagen I by 4T1.2 cells + CA-074 inhibitor
Supplementary Figure Legends 1-4 from An Insertion/Deletion Polymorphism within RERT-lncRNA Modulates Hepatocellular Carcinoma Risk
Authors: Zhu Zhansheng , Gao Xueren , He Yan , Zhao Hua , Yu Qiang , Jiang Deke , Zhang Pingzhao , Ma Xiaopin , Huang Huixing , Dong Dong , Wan Jiao , Gu Zhenyong , Jiang Xinghong , Yu Long , Gao Yuzhen
Published: March 2023

PDF file - 86K
Supplementary Table 1, Figure Legends 1-2 from Genetic Variants in Oxidative Stress–Related Genes Predict Chemoresistance in Primary Breast Cancer: A Prospective Observational Study and Validation
Authors: Yu Ke-Da , Huang A-Ji , Fan Lei , Li Wen-Feng , Shao Zhi-Ming
Published: March 2023

PDf file - 94K
Supplementary Methods from Genetic Variants in Oxidative Stress–Related Genes Predict Chemoresistance in Primary Breast Cancer: A Prospective Observational Study and Validation
Authors: Yu Ke-Da , Huang A-Ji , Fan Lei , Li Wen-Feng , Shao Zhi-Ming
Published: March 2023

PDF file - 88K
Supplementary Figure 3 from An Insertion/Deletion Polymorphism within RERT-lncRNA Modulates Hepatocellular Carcinoma Risk
Authors: Zhu Zhansheng , Gao Xueren , He Yan , Zhao Hua , Yu Qiang , Jiang Deke , Zhang Pingzhao , Ma Xiaopin , Huang Huixing , Dong Dong , Wan Jiao , Gu Zhenyong , Jiang Xinghong , Yu Long , Gao Yuzhen
Published: March 2023

PDF file - 164K, The effects of rs10680577 on EGLN2 promoter activity as determined by luciferase reporter assay
Supplementary Figure 1 from An Insertion/Deletion Polymorphism within RERT-lncRNA Modulates Hepatocellular Carcinoma Risk
Authors: Zhu Zhansheng , Gao Xueren , He Yan , Zhao Hua , Yu Qiang , Jiang Deke , Zhang Pingzhao , Ma Xiaopin , Huang Huixing , Dong Dong , Wan Jiao , Gu Zhenyong , Jiang Xinghong , Yu Long , Gao Yuzhen
Published: March 2023

PDF file - 158K, The genomic locations of rs10680577 and three adjacent genes (RAB4B, EGLN2 and RERT-lncRNA)
Supplementary Tables 1-3 from EZH2 Mediates Epigenetic Silencing of Neuroblastoma Suppressor Genes CASZ1, CLU, RUNX3, and NGFR
Authors: Wang Chunxi , Liu Zhihui , Woo Chan-Wook , Li Zhijie , Wang Lifeng , Wei Jun S. , Marquez Victor E. , Bates Susan E. , Jin Qihuang , Khan Javed , Ge Kai , Thiele Carol J.
Published: March 2023

PDF file - 93K
Supplementary Figure Legends 1-3 from Sensitivity of Glioblastomas to Clinically Available MEK Inhibitors Is Defined by Neurofibromin 1 Deficiency
Authors: See Wendy L. , Tan I-Li , Mukherjee Joydeep , Nicolaides Theodore , Pieper Russell O.
Published: March 2023

PDF file - 44K
Supplementary Figure Legend and Methods from Hedgehog Signaling Regulates Bladder Cancer Growth and Tumorigenicity
Authors: Fei Dennis Liang , Sanchez-Mejias Avencia , Wang Zhiqiang , Flaveny Colin , Long Jun , Singh Samer , Rodriguez-Blanco Jezabel , Tokhunts Robert , Giambelli Camilla , Briegel Karoline J. , Schulz Wolfgang A. , Gandolfi A. Jay , Karagas Margaret , Zimmers Teresa A. , Jorda Merce , Bejarano Pablo , Capobianco Anthony J. , Robbins David J.
Published: March 2023

PDF file, 147K.
Supplementary Figures 1-11, Tables 1-2 from MiR-96 Downregulates REV1 and RAD51 to Promote Cellular Sensitivity to Cisplatin and PARP Inhibition
Authors: Wang Yemin , Huang Jen-Wei , Calses Philamer , Kemp Christopher J. , Taniguchi Toshiyasu
Published: March 2023

PDF file - 1MB, Figure S1. Overexpression of miR-183-96-182 cluster miRNAs in U2OS cells. Figure S2. Effects of miR-183-96-182 cluster miRNAs on cisplatin-induced foci formation of RAD51, RPA2, FANCD2 and BRCA1. Figure S3. Overexpression of miR-96 sensitizes cancer cells to cisplatin and AZD2281. Figure S4. Overexpression of miR-96 sensitizes HR-deficient cancer cells to cisplatin. Figure S5. MiR-96 is highly conserved across species. Figure S6. Conservation of miR-96 binding sites and surrounding regions in the transcripts of REV1 and RAD51. Figure S7. Combinational treatment with miR-96 and cisplatin delayed tumor growth. Figure S8. Effects of miR-183-96-182 cluster miRNA mimics on cellular sensitivity to cisplatin and AZD2281. Figure S9. Effects of IR on the expression of miR-183-96-182 cluster miRNAs. Figure S10. Effect of miR-183-96-182 cluster miRNAs on BRCA1 and REV1 expression. Figure S11. Effect of miR-183-96-182 cluster miRNAs on cell growth. Supplementary Tables S1-S2 Table S1. Top 100 predicted targets of miR-96 by each miRNA prediction algorithm. Table S2. Predicted miR-96 targets by at least two prediction algorithms
Supplementary Table 1 from miRNA-708 Control of CD44+ Prostate Cancer–Initiating Cells
Authors: Saini Sharanjot , Majid Shahana , Shahryari Varahram , Arora Sumit , Yamamura Soichiro , Chang Inik , Zaman Mohd Saif , Deng Guoren , Tanaka Yuichiro , Dahiya Rajvir
Published: March 2023

PDF file - 73K, Clinicopathologic characteristics of prostate cancer patients
Supplementary Table 2 from Mithramycin Represses Basal and Cigarette Smoke–Induced Expression of ABCG2 and Inhibits Stem Cell Signaling in Lung and Esophageal Cancer Cells
Authors: Zhang Mary , Mathur Aarti , Zhang Yuwei , Xi Sichuan , Atay Scott , Hong Julie A. , Datrice Nicole , Upham Trevor , Kemp Clinton D. , Ripley R. Taylor , Wiegand Gordon , Avital Itzak , Fetsch Patricia , Mani Haresh , Zlott Daniel , Robey Robert , Bates Susan E. , Li Xinmin , Rao Mahadev , Schrump David S.
Published: March 2023

PDF file - 52K, ABCG2 Expression in Side Populations (sp) and Non-side Populations (nsp) of A549 and Calu-6 Cells Cultured with or without CSC
Supplementary Figure 2 from miRNA-708 Control of CD44+ Prostate Cancer–Initiating Cells
Authors: Saini Sharanjot , Majid Shahana , Shahryari Varahram , Arora Sumit , Yamamura Soichiro , Chang Inik , Zaman Mohd Saif , Deng Guoren , Tanaka Yuichiro , Dahiya Rajvir
Published: March 2023

PDF file - 567K, miR-708 induces morphological changes indicative of increased apoptosis in PCa cell lines
Supplementary Table 1 from OTX2 Represses Myogenic and Neuronal Differentiation in Medulloblastoma Cells
Authors: Bai Ren-Yuan , Staedtke Verena , Lidov Hart G. , Eberhart Charles G. , Riggins Gregory J.
Published: March 2023

PDF file, 19K, List of induced transcripts related to myogenic and neuronal differentiations.