bluuebunny/crossref_metadata_2025 huggingface dataset:
Related Article from Altered Histology Provides a Positive Clinical Signal in the Bronchial Epithelium
Authors: Szabo Eva
Published: April 2023

Related Article from Altered Histology Provides a Positive Clinical Signal in the Bronchial Epithelium
Supplementary Table 1 from Orally Active Vitamin D for Potential Chemoprevention of Posttransplant Malignancy
Authors: Obi Yoshitsugu , Ichimaru Naotsugu , Hamano Takayuki , Tomida Kodo , Matsui Isao , Fujii Naohiko , Okumi Masayoshi , Kaimori Jun-ya , Yazawa Koji , Kokado Yukito , Tsubakihara Yoshiharu , Nonomura Norio , Rakugi Hiromi , Takahara Shiro , Isaka Yoshitaka
Published: April 2023

PDF file - 137K, Comparison of baseline characteristics between AVD users and non-users within the tertiles of propensity scores
Supplementary Table 3 from miR-194 as a Predictor for Adenoma Recurrence in Patients with Advanced Colorectal Adenoma after Polypectomy
Authors: Wang Zhen-Hua , Ren Lin-Lin , Zheng Ping , Zheng Hai-Ming , Yu Ya-Nan , Wang Ji-Lin , Lin Yan-Wei , Chen Ying-Xuan , Ge Zhi-Zheng , Chen Xiao-Yu , Hong Jie , Fang Jing-Yuan
Published: April 2023

PDF - 114K, Differential miRs expression levels between NRACRA tissues and RACRA tissues in miR microarray.
Supplementary Figure from Bioavailability of Sulforaphane from Two Broccoli Sprout Beverages: Results of a Short-term, Cross-over Clinical Trial in Qidong, China
Authors: Egner Patricia A. , Chen Jian Guo , Wang Jin Bing , Wu Yan , Sun Yan , Lu Jian Hua , Zhu Jian , Zhang Yong Hui , Chen Yong Sheng , Friesen Marlin D. , Jacobson Lisa P. , Muñoz Alvaro , Ng Derek , Qian Geng Sun , Zhu Yuan Rong , Chen Tao Yang , Botting Nigel P. , Zhang Qingzhi , Fahey Jed W. , Talalay Paul , Groopman John D , Kensler Thomas W.
Published: April 2023

Supplementary Figure from Bioavailability of Sulforaphane from Two Broccoli Sprout Beverages: Results of a Short-term, Cross-over Clinical Trial in Qidong, China
Supplementary Figure Legends 1-7 from Sulindac Metabolites Induce Proteosomal and Lysosomal Degradation of the Epidermal Growth Factor Receptor
Authors: Pangburn Heather A. , Ahnen Dennis J. , Rice Pamela L.
Published: April 2023

Supplementary Figure Legends 1-7 from Sulindac Metabolites Induce Proteosomal and Lysosomal Degradation of the Epidermal Growth Factor Receptor
Supplementary Table 1 from The Influence of UGT1A6 Variants and Aspirin Use in a Randomized Trial of Celecoxib for Prevention of Colorectal Adenoma
Authors: Chan Andrew T. , Hsu Meier , Zauber Ann G. , Hawk Ernest T. , Bertagnolli Monica M.
Published: April 2023

PDF file - 64K
Supplementary Figure 4 from Sulindac Metabolites Induce Proteosomal and Lysosomal Degradation of the Epidermal Growth Factor Receptor
Authors: Pangburn Heather A. , Ahnen Dennis J. , Rice Pamela L.
Published: April 2023

Supplementary Figure 4 from Sulindac Metabolites Induce Proteosomal and Lysosomal Degradation of the Epidermal Growth Factor Receptor
Supplementary Table 2 from Analysis of DNA Methylation in Bowel Lavage Fluid for Detection of Colorectal Cancer
Authors: Harada Taku , Yamamoto Eiichiro , Yamano Hiro-o , Nojima Masanori , Maruyama Reo , Kumegawa Kohei , Ashida Masami , Yoshikawa Kenjiro , Kimura Tomoaki , Harada Eiji , Takagi Ryo , Tanaka Yoshihito , Aoki Hironori , Nishizono Masayo , Nakaoka Michiko , Tsuyada Akihiro , Niinuma Takeshi , Kai Masahiro , Shimoda Kazuya , Shinomura Yasuhisa , Sugai Tamotsu , Imai Kohzoh , Suzuki Hiromu
Published: April 2023

Results of ROC curve analysis for detection of CRC using BLF methylation
Supplemental Methods, Results, Figure Legend from Nrf2 Activation Protects against Solar-Simulated Ultraviolet Radiation in Mice and Humans
Authors: Knatko Elena V. , Ibbotson Sally H. , Zhang Ying , Higgins Maureen , Fahey Jed W. , Talalay Paul , Dawe Robert S. , Ferguson James , Huang Jeffrey T.-J. , Clarke Rosemary , Zheng Suqing , Saito Akira , Kalra Sukirti , Benedict Andrea L. , Honda Tadashi , Proby Charlotte M. , Dinkova-Kostova Albena T.
Published: April 2023

Supplemental Methods, Results, Figure Legend
Supplemental tables 1-5 from Smoking Is Associated with Acute and Chronic Prostatic Inflammation: Results from the REDUCE Study
Authors: Moreira Daniel M. , Nickel J. Curtis , Gerber Leah , Muller Roberto L. , Andriole Gerald L. , Castro-Santamaria Ramiro , Freedland Stephen J.
Published: April 2023

Supplemental tables 1-5. Supplemental Table 1: Inflammation by smoking status. Supplemental Table 2: Inflammation by treatment arm. Supplemental Table 3: Univariable odds ratios of inflammation by smoking status stratified by treatment arm. Supplemental Table 4: Association of smoking status with acute and chronic prostate inflammations at 2-year repeat biopsy by cancer status. Supplemental Table 5: Association of smoking status with acute and chronic prostate inflammations at 4-year repeat biopsy by cancer status.
Supplementary Figure Legend from Postmenopausal Serum Sex Steroids and Risk of Hormone Receptor–Positive and -Negative Breast Cancer: a Nested Case–Control Study
Authors: James Rebecca E. , Lukanova Annekatrin , Dossus Laure , Becker Susen , Rinaldi Sabina , Tjønneland Anne , Olsen Anja , Overvad Kim , Mesrine Sylvie , Engel Pierre , Clavel-Chapelon Françoise , Chang-Claude Jenny , Vrieling Alina , Boeing Heiner , Schütze Madlen , Trichopoulou Antonia , Lagiou Pagona , Trichopoulos Dimitrios , Palli Domenico , Krogh Vittorio , Panico Salvatore , Tumino Rosario , Sacerdote Carlotta , Rodríguez Laudina , Buckland Genevieve , Sánchez Maria-José , Amiano Pilar , Ardanaz Eva , Bueno-de-Mesquita Bas , Ros Martine M. , van Gils Carla H. , Peeters Petra H. , Khaw Kay-Tee , Wareham Nick , Key Timothy J. , Allen Naomi E. , Romieu Isabelle , Siddiq Afshan , Cox David , Riboli Elio , Kaaks Rudolf
Published: April 2023

PDF file - 54K
Supplemental Figure 1 from Regulation of VDR Expression in Apc-Mutant Mice, Human Colon Cancers and Adenomas
Authors: Giardina Charles , Nakanishi Masako , Khan Awaad , Kuratnik Anton , Xu Wanli , Brenner Bruce , Rosenberg Daniel W.
Published: April 2023

Supplemental Figure 1. Vitamin D does not prevent tumor formation Apc heterozygote mice even on a cancer-promoting diet
Perspective on This Article from Performance of a Colorectal Cancer Screening Protocol in an Economically and Medically Underserved Population
Authors: Cai Shan-Rong , Zhang Su-Zhan , Zhu Hong-Hong , Huang Yan-Qin , Li Qi-Rong , Ma Xin-Yuan , Yao Kai-Yan , Zheng Shu
Published: April 2023

Perspective on This Article from Performance of a Colorectal Cancer Screening Protocol in an Economically and Medically Underserved Population
Supp Table 1, Supp Table 2 from Involvement of Epigenetics and EMT-Related miRNA in Arsenic-Induced Neoplastic Transformation and Their Potential Clinical Use
Authors: Michailidi Christina , Hayashi Masamichi , Datta Sayantan , Sen Tanusree , Zenner Kaitlyn , Oladeru Oluwadamilola , Brait Mariana , Izumchenko Evgeny , Baras Alexander , VandenBussche Christopher , Argos Maria , Bivalacqua Trinity J. , Ahsan Habibul , Hahn Noah M. , Netto George J. , Sidransky David , Hoque Mohammad Obaidul
Published: April 2023

Supp Table 1, Supp Table 2. Supp Table 1: A.QMSP probe and primers, B.RT-PCR assay. Supplemental Table 2: The summary of notch methylation array findings
Supplementary Figure Legends from Plasma MicroRNAs as Novel Biomarkers for Patients with Intraductal Papillary Mucinous Neoplasms of the Pancreas
Authors: Permuth-Wey Jennifer , Chen Dung-Tsa , Fulp William J. , Yoder Sean J. , Zhang Yonghong , Georgeades Christina , Husain Kazim , Centeno Barbara Ann , Magliocco Anthony M. , Coppola Domenico , Malafa Mokenge
Published: April 2023

Please see this file for descriptions
supplementary figures S1-3 from Enhanced Antitumor Activity of 3-Bromopyruvate in Combination with Rapamycin In Vivo and In Vitro
Authors: Zhang Qi , Pan Jing , Lubet Ronald A. , Komas Steven M. , Kalyanaraman Balaraman , Wang Yian , You Ming
Published: April 2023

supplementary figures S1-3. Supplementary Fig S1: Light photomicrographs of representative adenomas from the lung nodules. Supplementary Fig S2: H & E staining of representative normal lungs. Supplementary Fig S3: Baseline ECAR and OCAR level of H23 and h1299.
Supplementary Table S1 from Effect of Metformin on Breast Ductal Carcinoma In Situ Proliferation in a Randomized Presurgical Trial
Authors: DeCensi Andrea , Puntoni Matteo , Guerrieri-Gonzaga Aliana , Cazzaniga Massimiliano , Serrano Davide , Lazzeroni Matteo , Vingiani Andrea , Gentilini Oreste , Petrera Marilena , Viale Giuseppe , Cuzick Jack , Bonanni Bernardo , Pruneri Giancarlo
Published: April 2023

Ki-67 values in pre- and post-treatment invasive cancer and post-treatment adjacent DCIS tissue in patients with HER2+ve adjacent DCIS and HER2+ve or HER2-ve invasive breast cancer
Supplementary Figure S1 from CXCR4 Is a Novel Target of Cancer Chemopreventative Isothiocyanates in Prostate Cancer Cells
Authors: Sakao Kozue , Vyas Avani R. , Chinni Sreenivasa R. , Amjad Ali I. , Parikh Rahul , Singh Shivendra V.
Published: April 2023

Supplementary Fig. S1: Quantitation of CXCR4 mRNA by real-time PCR in PC-3 cells after 6-or 12-hour treatment with DMSO (control) or the indicated ITC compound (2.5 or 5 μmol/L).
Supplementary Table 3 from Mammary Gland Density Predicts the Cancer Inhibitory Activity of the N-3 to N-6 Ratio of Dietary Fat
Authors: Zhu Zongjian , Jiang Weiqin , McGinley John N. , Prokopczyk Bogden , Richie John P. , El Bayoumy Karam , Manni Andrea , Thompson Henry J.
Published: April 2023

PDF file - 75K
Supplementary Figure 1 from Mammary Gland Density Predicts the Cancer Inhibitory Activity of the N-3 to N-6 Ratio of Dietary Fat
Authors: Zhu Zongjian , Jiang Weiqin , McGinley John N. , Prokopczyk Bogden , Richie John P. , El Bayoumy Karam , Manni Andrea , Thompson Henry J.
Published: April 2023

PDF file - 552K
Supplemental Table 1 from Metformin Accumulation Correlates with Organic Cation Transporter 2 Protein Expression and Predicts Mammary Tumor Regression In Vivo
Authors: Checkley L. Allyson , Rudolph Michael C. , Wellberg Elizabeth A. , Giles Erin D. , Wahdan-Alaswad Reema S. , Houck Julie A. , Edgerton Susan M. , Thor Ann D. , Schedin Pepper , Anderson Steven M. , MacLean Paul S.
Published: April 2023

Fatty acid amounts (nmol/mg tumor) in responders versus non-responders. Significance denoted by p-value in right column.
Supplemental Figure 2 from Metformin Accumulation Correlates with Organic Cation Transporter 2 Protein Expression and Predicts Mammary Tumor Regression In Vivo
Authors: Checkley L. Allyson , Rudolph Michael C. , Wellberg Elizabeth A. , Giles Erin D. , Wahdan-Alaswad Reema S. , Houck Julie A. , Edgerton Susan M. , Thor Ann D. , Schedin Pepper , Anderson Steven M. , MacLean Paul S.
Published: April 2023

A) Percent CD68 positive cells in control versus metformin treated tumors (Con tumors, n=28; Met tumors, n=34) B) Percent CD68 positive cells in non-responding versus responding tumors (Regressed, n=17; Progressed, n=17).
Supplementary Table S1 and S2 from Uptake of Genetic Testing Among Patients with Cancer At Risk for Lynch Syndrome in the National Health Interview Survey
Authors: Actkins Ky'Era V. , Srinivasan Swetha , Spees Lisa P. , Turbitt Erin , Allen Caitlin G. , Roberts Megan C.
Published: April 2023

Supplementary Table S1 shows unweighted descriptive statistics of genetic testing uptake. Supplementary Table S2 shows genetic testing uptake by (1) cancer type and (2) racial groups
Supplemental Figure 2 from Benefits of Multifaceted Chemopreventives in the Suppression of the Oral Squamous Cell Carcinoma (OSCC) Tumorigenic Phenotype
Authors: Mallery Susan R. , Wang Daren , Santiago Brian , Pei Ping , Schwendeman Steven P. , Nieto Kari , Spinney Richard , Tong Meng , Koutras George , Han Brian , Holpuch Andrew , Lang James
Published: April 2023

Molecular modeling and Kd for binding interactions with c-Src and c-Abl ATP binding sites.
Figure S2 from Characteristics of Breast Ducts in Normal-Risk and High-risk Women and Their Relationship to Ductal Cytologic Atypia
Authors: Danforth David N. , Filie Armando C. , Warner Andrew C. , Wright George W. , Sun Zhonghe , Ried Thomas , McGowan Christine T. , Prindiville Sheila A.
Published: April 2023

Figure S2
Supplemental Tables 1-3 from Germline and Somatic NF1 Alterations Are Linked to Increased HER2 Expression in Breast Cancer
Authors: Wang Xia , Kallionpää Roope A. , Gonzales Patrick R. , Chitale Dhananjay A. , Tousignant Renee N. , Crowley Jacob P. , Chen Zhihua , Yoder Sean J. , Blakeley Jaishri O. , Acosta Maria T. , Korf Bruce R. , Messiaen Ludwine M. , Tainsky Michael A.
Published: April 2023

TCGA invasive breast cancer mRNA expression, protein expression, and CNV comparison based on NF1 genetic alterations.
Table S4 from Genetic Variants in Metabolic Signaling Pathways and Their Interaction with Lifestyle Factors on Breast Cancer Risk: A Random Survival Forest Analysis
Authors: Jung Su Yon , Papp Jeanette C. , Sobel Eric M. , Zhang Zuo-Feng
Published: April 2023

Cox regression for the genotypes of AKT1 rs2494740, AKT1 rs2494744, and AKT1 rs2498789 predicting breast cancer risk
Table S1 from Genetic Variants in Metabolic Signaling Pathways and Their Interaction with Lifestyle Factors on Breast Cancer Risk: A Random Survival Forest Analysis
Authors: Jung Su Yon , Papp Jeanette C. , Sobel Eric M. , Zhang Zuo-Feng
Published: April 2023

Allele frequencies of 54 IGF-I/insulin pathways-relevant SNPs
Figure S3 from Genetic Variants in Metabolic Signaling Pathways and Their Interaction with Lifestyle Factors on Breast Cancer Risk: A Random Survival Forest Analysis
Authors: Jung Su Yon , Papp Jeanette C. , Sobel Eric M. , Zhang Zuo-Feng
Published: April 2023

Comparing minimal depth and VIMP rankings
Table S4 from Effect of Antibiotics on Gut and Vaginal Microbiomes Associated with Cervical Cancer Development in Mice
Authors: Karpinets Tatiana V. , Solley Travis N. , Mikkelson Megan D. , Dorta-Estremera Stephanie , Nookala Sita S. , Medrano Andrea Y. Delgado , Petrosino Joseph F. , Mezzari Melissa P. , Zhang Jinghua , Futreal P. Andrew , Sastry K. Jagannadha , Colbert Lauren E. , Klopp Ann
Published: April 2023

Known and novel effects of the AB exposure and their association with cervical cancer development
Table S3 from Effect of Antibiotics on Gut and Vaginal Microbiomes Associated with Cervical Cancer Development in Mice
Authors: Karpinets Tatiana V. , Solley Travis N. , Mikkelson Megan D. , Dorta-Estremera Stephanie , Nookala Sita S. , Medrano Andrea Y. Delgado , Petrosino Joseph F. , Mezzari Melissa P. , Zhang Jinghua , Futreal P. Andrew , Sastry K. Jagannadha , Colbert Lauren E. , Klopp Ann
Published: April 2023

Metadata of mice in the study
Table S2 from Effect of Antibiotics on Gut and Vaginal Microbiomes Associated with Cervical Cancer Development in Mice
Authors: Karpinets Tatiana V. , Solley Travis N. , Mikkelson Megan D. , Dorta-Estremera Stephanie , Nookala Sita S. , Medrano Andrea Y. Delgado , Petrosino Joseph F. , Mezzari Melissa P. , Zhang Jinghua , Futreal P. Andrew , Sastry K. Jagannadha , Colbert Lauren E. , Klopp Ann
Published: April 2023

OTUs and their normalized abundances in the validation cohort
Supplementary Figure from Plasma Metabolomics Analysis of Aspirin Treatment and Risk of Colorectal Adenomas
Authors: Barry Elizabeth L. , Fedirko Veronika , Jin Yutong , Liu Ken , Mott Leila A. , Peacock Janet L. , Passarelli Michael N. , Baron John A. , Jones Dean P.
Published: April 2023

Supplementary Figure from Plasma Metabolomics Analysis of Aspirin Treatment and Risk of Colorectal Adenomas
Supplementary Table 1 from Case-only Methods Identified Genetic Loci Predicting a Subgroup of Men with Reduced Risk of High-grade Prostate Cancer by Finasteride
Authors: Dai James Y. , LeBlanc Michael , Goodman Phyllis J. , Lucia M. Scott , Thompson Ian M. , Tangen Catherine M.
Published: April 2023

Supplementary Table 1
Supplementary Figure 1 from Case-only Methods Identified Genetic Loci Predicting a Subgroup of Men with Reduced Risk of High-grade Prostate Cancer by Finasteride
Authors: Dai James Y. , LeBlanc Michael , Goodman Phyllis J. , Lucia M. Scott , Thompson Ian M. , Tangen Catherine M.
Published: April 2023

Supplementary Figure 1
Supplementary Data from Transcriptomic Response to Calcium in Normal Colon Organoids is Impacted by Colon Location and Sex
Authors: Devall Matthew A.M. , Dampier Christopher H. , Eaton Stephen , Ali Mourad Wagdy , Plummer Sarah J. , Bryant Jennifer , Gauderman W. James , Peters Ulrike , Powell Steven M. , Casey Graham
Published: April 2023

Supplementary Data from Transcriptomic Response to Calcium in Normal Colon Organoids is Impacted by Colon Location and Sex
Supplementary Table 2 from Immune Responses Vary in Preinvasive Colorectal Lesions by Tumor Location and Histology
Authors: Wallace Kristin , El Nahas Georges J. , Bookhout Christine , Thaxton Jessica E. , Lewin David N. , Nikolaishvili-Feinberg Nana , Cohen Stephanie M. , Brazeal J. Grant , Hill Elizabeth G. , Wu Jennifer D. , Baron John A. , Alekseyenko Alexander V.
Published: April 2023

S. Tab 2: Univariate models (batch adjusted only)
Supplementary Table 1 from Immune Responses Vary in Preinvasive Colorectal Lesions by Tumor Location and Histology
Authors: Wallace Kristin , El Nahas Georges J. , Bookhout Christine , Thaxton Jessica E. , Lewin David N. , Nikolaishvili-Feinberg Nana , Cohen Stephanie M. , Brazeal J. Grant , Hill Elizabeth G. , Wu Jennifer D. , Baron John A. , Alekseyenko Alexander V.
Published: April 2023

S Tab 1: The application order of the pretreatment and staining steps, including epitope retrieval (ER), peroxidase and protein blocking, primary and secondary antibodies, and the Tyramide Signal Amplification (TSA).
Supplementary Data 2 from Breast Cancer Chemoprevention: Use and Views of Australian Women and Their Clinicians
Authors: Macdonald Courtney , Saunders Christobel M. , Keogh Louise A. , Hunter Morgan , Mazza Danielle , McLachlan Sue-Anne , Jones Sandra C. , Nesci Stephanie , Friedlander Michael L. , Hopper John L. , Emery Jon D. , Hickey Martha , Milne Roger L. , Phillips Kelly-Anne
Published: April 2023

Survey sent to clincians
Supplementary Tables 1-5 from Use of Aspirin and Statins in Relation to Inflammation in Benign Prostate Tissue in the Placebo Arm of the Prostate Cancer Prevention Trial
Authors: Hurwitz Lauren M. , Kulac Ibrahim , Gumuskaya Berrak , Valle Javier A. Baena Del , Benedetti Ines , Pan Fan , Liu Jun O. , Marrone Michael T. , Arnold Kathryn B. , Goodman Phyllis J. , Tangen Catherine M. , Lucia M. Scott , Thompson Ian M. , Drake Charles G. , Isaacs William B. , Nelson William G. , De Marzo Angelo M. , Platz Elizabeth A.
Published: April 2023

Supplementary Tables 1-5
Supplementary Figure S1 legend from Sulforaphane Suppresses the Growth of Triple-negative Breast Cancer Stem-like Cells In vitro and In vivo
Authors: Castro Nadia P. , Rangel Maria C. , Merchant Anand S. , MacKinnon Gabriel , Cuttitta Frank , Salomon David S. , Kim Young S.
Published: April 2023

SFN modulates CR1 promoter luciferase activity in MDA-MB-231-Luc-D3H1 cells.
Supplementary Table from THBS2/CA19-9 Detecting Pancreatic Ductal Adenocarcinoma at Diagnosis Underperforms in Prediagnostic Detection: Implications for Biomarker Advancement
Authors: Udgata Shirsa , Takenaka Naomi , Bamlet William R. , Oberg Ann L. , Yee Stephanie S. , Carpenter Erica L. , Herman Daniel , Kim Jungsun , Petersen Gloria M. , Zaret Kenneth S.
Published: April 2023

Supplementary Table 1
Figure S3 from The Discovery and Validation of Biomarkers for the Diagnosis of Esophageal Squamous Dysplasia and Squamous Cell Carcinoma
Authors: Couch George , Redman James E. , Wernisch Lorenz , Newton Richard , Malhotra Shalini , Dawsey Sanford M. , Lao-Sirieix Pierre , Fitzgerald Rebecca C.
Published: April 2023

Representative images of immunohistochemistry staining for normal esophagus from ESCC patients (NT) and ESCC samples (T) for genes CTSL, TNC and COL3A1 at 100x magnification.
Supplemental Fig. S2 from Inflammation-Related IL1β/IL1R Signaling Promotes the Development of Asbestos-Induced Malignant Mesothelioma
Authors: Kadariya Yuwaraj , Menges Craig W. , Talarchek Jacqueline , Cai Kathy Q. , Klein-Szanto Andres J. , Pietrofesa Ralph A. , Christofidou-Solomidou Melpo , Cheung Mitchell , Mossman Brooke T. , Shukla Arti , Testa Joseph R.
Published: April 2023

Top, Scatter plot showing difference in MM incidence between asbestos-exposed wild-type (WT, Asc +/+), Asc+/-, and Asc-/- mice. Bottom, summary showing statistically significant difference in MM incidence between WT mice and Asc-/- mice (p < 0.05), but not between WT and Asc+/- mice.
Supplementary Figures 1-2, Tables 1-4 from Prevention of Colorectal Carcinogenesis by DNA-Binding Small-Molecule Curaxin CBL0137 Involves Suppression of Wnt Signaling
Authors: Kirsanov Kirill , Fetisov Timur , Lesovaya Ekaterina A. , Maksimova Varvara , Trukhanova Lubov , Antoshina Elena , Gor'kova Tatiana , Morozova Olga , Safina Alfiya , Fleyshman Daria , Salimov Ramiz , Shipaeva Elena , Ivanov Roman , Leonov Andrey , Purmal Andrei A. , Belitsky Gennady A. , Gudkov Andrei V. , Gurova Katerina V. , Yakubovskaya Marianna G.
Published: April 2023

Supplemental Figures S1, S2; Supplemental Tables S1, S2, S3, S4
Supplemental Fig. S1 from Inflammation-Related IL1β/IL1R Signaling Promotes the Development of Asbestos-Induced Malignant Mesothelioma
Authors: Kadariya Yuwaraj , Menges Craig W. , Talarchek Jacqueline , Cai Kathy Q. , Klein-Szanto Andres J. , Pietrofesa Ralph A. , Christofidou-Solomidou Melpo , Cheung Mitchell , Mossman Brooke T. , Shukla Arti , Testa Joseph R.
Published: April 2023

Top, Kaplan-Meier curves depicting percent disease-free animals in asbestos-exposed Asc-/- homozygous knockout mice and similarly-exposed wild-type (WT, Asc +/+) littermates. Bottom, summary of differences in median disease-free status and MM incidence between Asc-/- and WT mice.
Supplemental Tables 1-3 from Breast Hormone Concentrations in Random Fine-Needle Aspirates of Healthy Women Associate with Cytological Atypia and Gene Methylation
Authors: Lee Oukseub , Heinz Richard E. , Ivancic David , Muzzio Miguel , Chatterton Robert T. , Zalles Carola M. , Keeney Kara , Phan Belinda , Liu Dachao , Scholtens Denise , Fackler Mary Jo , Stearns Vered , Sukumar Saraswati , Khan Seema A.
Published: April 2023

Table S1. Correlations between parameters that influence the quality of the rFNA sample (119 women) Table S2. Correlation between Breast and serum hormone concentrations. Table S3. Cytology according to menopausal status and menstrual cycle.
Supplementary Table Legends from Physical Activity and Long-term Quality of Life among Colorectal Cancer Survivors—A Population-based Prospective Study
Authors: Eyl Ruth Elisa , Koch-Gallenkamp Lena , Jansen Lina , Walter Viola , Carr Prudence R. , Hoffmeister Michael , Chang-Claude Jenny , Brenner Hermann , Arndt Volker
Published: April 2023

Legends for Supplementary Tables 1-6
Supplementary file 1 from Risk Prediction Models for Colorectal Cancer: A Systematic Review
Authors: Usher-Smith Juliet A. , Walter Fiona M. , Emery Jon D. , Win Aung K. , Griffin Simon J.
Published: April 2023

Search Strategies.
Supplementary Table 2 from Risk Prediction Models for Colorectal Cancer: A Systematic Review
Authors: Usher-Smith Juliet A. , Walter Fiona M. , Emery Jon D. , Win Aung K. , Griffin Simon J.
Published: April 2023

Methods for validation studies.
Supplemental Data from The Rexinoids LG100268 and LG101506 Inhibit Inflammation and Suppress Lung Carcinogenesis in A/J Mice
Authors: Cao Martine , Royce Darlene B. , Risingsong Renee , Williams Charlotte R. , Sporn Michael B. , Liby Karen T.
Published: April 2023

Supplemental Table 1. Autoimmune and inflammatory genes regulated by LG268 in RAW264.7 cells stimulated with LPS. Supplemental Table 2. Cycle numbers of the genes of interest in the qPCR analysis (obtained from 3 independent experiments). Supplemental Table 3. Combination of the rexinoid LG268 and the triterpenoid CDDO-Im for prevention of lung cancer.
Supplementary Table 2 from Obesity-Associated Alterations in Inflammation, Epigenetics, and Mammary Tumor Growth Persist in Formerly Obese Mice
Authors: Rossi Emily L. , de Angel Rebecca E. , Bowers Laura W. , Khatib Subreen A. , Smith Laura A. , Van Buren Eric , Bhardwaj Priya , Giri Dilip , Estecio Marcos R. , Troester Melissa A. , Hair Brionna Y. , Kirk Erin L. , Gong Ting , Shen Jianjun , Dannenberg Andrew J. , Hursting Stephen D.
Published: April 2023

Human Energy Responsive Methylation Changes in Normal Breast Tissue.
Table 3S. from Comparison between Urine and Cervical Samples for HPV DNA Detection and Typing in Young Women in Colombia
Authors: Cómbita Alba Lucía , Gheit Tarik , González Paula , Puerto Devi , Murillo Raúl Hernando , Montoya Luisa , Vorsters Alex , Van Keer Severien , Van Damme Pierre , Tommasino Massimo , Hernández-Suárez Gustavo , Sánchez Laura , Herrero Rolando , Wiesner Carolina
Published: April 2023

Concordance of HPV detection in cervical samples and urine according to cytological results.
Supplementary Table 2B from Using Digital Pathology to Understand Epithelial Characteristics of Benign Breast Disease among Women Undergoing Diagnostic Image-Guided Breast Biopsy
Authors: Mullooly Maeve , Puvanesarajah Samantha , Fan Shaoqi , Pfeiffer Ruth M. , Olsson Linnea T. , Hada Manila , Kirk Erin L. , Vacek Pamela M. , Weaver Donald L. , Shepherd John , Mahmoudzadeh Amir , Wang Jeff , Malkov Serghei , Johnson Jason M. , Hewitt Stephen M. , Herschorn Sally D. , Sherman Mark E. , Troester Melissa A. , Gierach Gretchen L.
Published: April 2023

Supplementary Table 2B
Table 1S. from Comparison between Urine and Cervical Samples for HPV DNA Detection and Typing in Young Women in Colombia
Authors: Cómbita Alba Lucía , Gheit Tarik , González Paula , Puerto Devi , Murillo Raúl Hernando , Montoya Luisa , Vorsters Alex , Van Keer Severien , Van Damme Pierre , Tommasino Massimo , Hernández-Suárez Gustavo , Sánchez Laura , Herrero Rolando , Wiesner Carolina
Published: April 2023

Sensitivity and specificity of urine HPV DNA test for high-risk (HR)-HPV and probable/possible high-risk (pHR)-HPV types different from HPV 16 and 18. (Results of cervical samples used as gold standard).
Figure 2S. from Comparison between Urine and Cervical Samples for HPV DNA Detection and Typing in Young Women in Colombia
Authors: Cómbita Alba Lucía , Gheit Tarik , González Paula , Puerto Devi , Murillo Raúl Hernando , Montoya Luisa , Vorsters Alex , Van Keer Severien , Van Damme Pierre , Tommasino Massimo , Hernández-Suárez Gustavo , Sánchez Laura , Herrero Rolando , Wiesner Carolina
Published: April 2023

Agreement among cervix and urine samples for the detection of HR/pHR HPV types different from HPV 16 and 18.
Document for the supplementary figure legends from Comparison between Urine and Cervical Samples for HPV DNA Detection and Typing in Young Women in Colombia
Authors: Cómbita Alba Lucía , Gheit Tarik , González Paula , Puerto Devi , Murillo Raúl Hernando , Montoya Luisa , Vorsters Alex , Van Keer Severien , Van Damme Pierre , Tommasino Massimo , Hernández-Suárez Gustavo , Sánchez Laura , Herrero Rolando , Wiesner Carolina
Published: April 2023

Document for the supplementary figure legends.
Supplementary Methods, Tables 1 - 3, Figures 1 - 2 from Does Mutated K-RAS Oncogene Attenuate the Effect of Sulindac in Colon Cancer Chemoprevention?
Authors: Rice Photini F.S. , Ehrichs Kevin G. , Jones Mykella S. , Chen Hwudarw , Hsu Chiu-Hsieh , Abril Edward R. , Nagle Raymond B. , Besselsen David G. , Barton Jennifer K. , Ignatenko Natalia A.
Published: April 2023

Supplementary Table 1. Statistical analysis of endpoints derived from histology. Number of animals in different groups is listed in Figure 1B. Supplementary Table 2. Statistical analysis of adenoma grade by genotypes in the subset of AOM-induced mice, 34 weeks of age, from Table 1B. Number of slides analysed is presented in parentheses. Supplementary Table 3. Analysis of colon ACF by genotypes and treatment. Supplementary Figure 1. Comformation of colon-specific expression of mutant K-Ras allele in the compound Vil-Cre-ERT2K-rasG12D mouse. Supplementary Figure 2. Characterization downstream targets of mutant K-RAS in Vil-Cre-ERT2K-rasG12D mouse model by Western blot analysis in the colon tissue of Control and AOM-treated mice of different genotypes at 26 weeks of age (18 weeks after the last AOM injection when applicable).
Supplemental Table S2 from Effect of Green Tea Supplements on Liver Enzyme Elevation: Results from a Randomized Intervention Study in the United States
Authors: Yu Zheming , Samavat Hamed , Dostal Allison M. , Wang Renwei , Torkelson Carolyn J. , Yang Chung S. , Butler Lesley M. , Kensler Thomas W. , Wu Anna H. , Kurzer Mindy S. , Yuan Jian-Min
Published: April 2023

Supplemental Table S2 shows the baseline mean concentrations of alanine aminotransferase (ALT) and aspartate aminotransferase (AST) in all participants and in subgroups stratified by selected characteristics of study participants by treatment status (GTE or placebo).
Supplemental Figure S4 from Dietary Methyl Donor Depletion Suppresses Intestinal Adenoma Development
Authors: Hanley Matthew P. , Kadaveru Krishna , Perret Christine , Giardina Charles , Rosenberg Daniel W.
Published: April 2023

Supplemental Figure S4. (A) Representative images of liver H&E staining from the four experimental groups. Mice maintained on MDD diet for 18 weeks develop hepatic steatosis, as evidenced by the presence of vacuoles formed by fat accumulation. These vacuoles are not present in the liver of MDD:MDS mice, indicating that hepatic steatosis is reversed after 7 weeks of methyl donor repletion. (B) Representative images of spleen H&E staining; MDD mice show a loss of white pulp (stained purple) and follicles, indicating a reduction in splenic lymphocyte populations. As before, spleens from MDD:MDS mice do not show evidence of lymphocytic depletion, indicating that this effect of the MDD diet is reversible by methyl donor repletion. (C) Chronic choline deficiency has been reported to cause renal fibrosis, particularly around glomeruli. Using Masson's Trichrome stain to visualize collagen deposition (blue), we did not find evidence of renal fibrosis in MDD mice. Scale bars, 200 and 800 Âµm.
Supplementary Figure 1 from Janus Kinase 3–Activating Mutations Identified in Natural Killer/T-cell Lymphoma
Authors: Koo Ghee Chong , Tan Soo Yong , Tang Tiffany , Poon Song Ling , Allen George E. , Tan Leonard , Chong Soo Ching , Ong Whee Sze , Tay Kevin , Tao Miriam , Quek Richard , Loong Susan , Yeoh Kheng-Wei , Yap Swee Peng , Lee Kuo Ann , Lim Lay Cheng , Tan Daryl , Goh Christopher , Cutcutache Ioana , Yu Willie , Young Ng Cedric Chuan , Rajasegaran Vikneswari , Heng Hong Lee , Gan Anna , Ong Choon Kiat , Rozen Steve , Tan Patrick , Teh Bin Tean , Lim Soon Thye
Published: April 2023

PDF file - 185K, Representative HRM curves of a NKTCL case confirmed as heterozygous JAK3A573V mutation
Supplementary Figure S6 from Bone Marrow–Derived Gr1+ Cells Can Generate a Metastasis-Resistant Microenvironment Via Induced Secretion of Thrombospondin-1
Authors: Catena Raúl , Bhattacharya Nandita , El Rayes Tina , Wang Suming , Choi Hyejin , Gao Dingcheng , Ryu Seongho , Joshi Natasha , Bielenberg Diane , Lee Sharrell B. , Haukaas Svein A. , Gravdal Karsten , Halvorsen Ole J. , Akslen Lars A. , Watnick Randolph S. , Mittal Vivek
Published: April 2023

Supplementary Figure S6 - PDF file 137K, Gr1+ cells in the lungs of Tsp-1-/- BMT mice lack Tsp-1
Supplementary Figure S4 from Bone Marrow–Derived Gr1+ Cells Can Generate a Metastasis-Resistant Microenvironment Via Induced Secretion of Thrombospondin-1
Authors: Catena Raúl , Bhattacharya Nandita , El Rayes Tina , Wang Suming , Choi Hyejin , Gao Dingcheng , Ryu Seongho , Joshi Natasha , Bielenberg Diane , Lee Sharrell B. , Haukaas Svein A. , Gravdal Karsten , Halvorsen Ole J. , Akslen Lars A. , Watnick Randolph S. , Mittal Vivek
Published: April 2023

Supplementary Figure S4 - PDF file 167K, Conditioned media from MDA-MB-231 and LM2 breast cancer cells generate Gr1+ BM-derived niches in the lungs with differential expression of Tsp-1
Supplementary Figure S3 from Bone Marrow–Derived Gr1+ Cells Can Generate a Metastasis-Resistant Microenvironment Via Induced Secretion of Thrombospondin-1
Authors: Catena Raúl , Bhattacharya Nandita , El Rayes Tina , Wang Suming , Choi Hyejin , Gao Dingcheng , Ryu Seongho , Joshi Natasha , Bielenberg Diane , Lee Sharrell B. , Haukaas Svein A. , Gravdal Karsten , Halvorsen Ole J. , Akslen Lars A. , Watnick Randolph S. , Mittal Vivek
Published: April 2023

Supplementary Figure S3 - PDF file 84K, Tsp-1 is specifically expressed by the BM-derived Gr1+ cell subsets
Supplementary Figure S2 from Bone Marrow–Derived Gr1+ Cells Can Generate a Metastasis-Resistant Microenvironment Via Induced Secretion of Thrombospondin-1
Authors: Catena Raúl , Bhattacharya Nandita , El Rayes Tina , Wang Suming , Choi Hyejin , Gao Dingcheng , Ryu Seongho , Joshi Natasha , Bielenberg Diane , Lee Sharrell B. , Haukaas Svein A. , Gravdal Karsten , Halvorsen Ole J. , Akslen Lars A. , Watnick Randolph S. , Mittal Vivek
Published: April 2023

Supplementary Figure S2 - PDF file 44K, Tsp-1 is expressed in the lungs of mice treated with metastasis-incompetent PC3 CM
Supplementary Tables 1-2 from miR-23a Promotes the Transition from Indolent to Invasive Colorectal Cancer
Authors: Jahid Sohail , Sun Jian , Edwards Robert A. , Dizon Diana , Panarelli Nicole C. , Milsom Jeffrey W. , Sikandar Shaheen S. , Gümüş Zeynep H. , Lipkin Steven M.
Published: April 2023

PDF file - 83K, Table 1-list of miRs tested for Figure 1G. Table 2 shows scores for distribution of the permuted test statistic of miR-23a and miR-27a in dataset GSE14333.
Supplementary Figure S10 from Bone Marrow–Derived Gr1+ Cells Can Generate a Metastasis-Resistant Microenvironment Via Induced Secretion of Thrombospondin-1
Authors: Catena Raúl , Bhattacharya Nandita , El Rayes Tina , Wang Suming , Choi Hyejin , Gao Dingcheng , Ryu Seongho , Joshi Natasha , Bielenberg Diane , Lee Sharrell B. , Haukaas Svein A. , Gravdal Karsten , Halvorsen Ole J. , Akslen Lars A. , Watnick Randolph S. , Mittal Vivek
Published: April 2023

Supplementary Figure S10 - PDF file 175K, Prosaposin modulates lung Tsp-1
Supplementary Figure 5 from Forced Mitotic Entry of S-Phase Cells as a Therapeutic Strategy Induced by Inhibition of WEE1
Authors: Aarts Marieke , Sharpe Rachel , Garcia-Murillas Isaac , Gevensleben Heidrun , Hurd Melissa S. , Shumway Stuart D. , Toniatti Carlo , Ashworth Alan , Turner Nicholas C.
Published: April 2023

PDF file - 146K, Combined inhibition of CHK1 and WEE1
Supplementary Figure Legends from Autophagy Sustains Mitochondrial Glutamine Metabolism and Growth of BrafV600E–Driven Lung Tumors
Authors: Strohecker Anne M. , Guo Jessie Yanxiang , Karsli-Uzunbas Gizem , Price Sandy M. , Chen Guanghua Jim , Mathew Robin , McMahon Martin , White Eileen
Published: April 2023

Supplementary Figure Legends - PDF file 75K, Figure legends for Supplementary Figures 1-8
Figure S6 from Autophagy Sustains Mitochondrial Glutamine Metabolism and Growth of BrafV600E–Driven Lung Tumors
Authors: Strohecker Anne M. , Guo Jessie Yanxiang , Karsli-Uzunbas Gizem , Price Sandy M. , Chen Guanghua Jim , Mathew Robin , McMahon Martin , White Eileen
Published: April 2023

Figure S6 - PDF file 1967K, Tumor atrophy is not due to differences in beta-galactosidase associated senescence or apoptosis
Figure S4 from Autophagy Sustains Mitochondrial Glutamine Metabolism and Growth of BrafV600E–Driven Lung Tumors
Authors: Strohecker Anne M. , Guo Jessie Yanxiang , Karsli-Uzunbas Gizem , Price Sandy M. , Chen Guanghua Jim , Mathew Robin , McMahon Martin , White Eileen
Published: April 2023

Figure S4 - PDF file 6081K, Atg7 deficiency has distinct consequences for tumor establishment and maintenance in BrafV600E-driven lung tumors
Figure S2 from Autophagy Sustains Mitochondrial Glutamine Metabolism and Growth of BrafV600E–Driven Lung Tumors
Authors: Strohecker Anne M. , Guo Jessie Yanxiang , Karsli-Uzunbas Gizem , Price Sandy M. , Chen Guanghua Jim , Mathew Robin , McMahon Martin , White Eileen
Published: April 2023

Figure S2 - PDF file 634K, Persistent deletion of ATG7 in late stage tumorigenesis
Supplementary Figures 1-8 from CD36 Repression Activates a Multicellular Stromal Program Shared by High Mammographic Density and Tumor Tissues
Authors: DeFilippis Rosa Anna , Chang Hang , Dumont Nancy , Rabban Joseph T. , Chen Yunn-Yi , Fontenay Gerald V. , Berman Hal K. , Gauthier Mona L. , Zhao Jianxin , Hu Donglei , Marx James J. , Tjoe Judy A. , Ziv Elad , Febbraio Maria , Kerlikowske Karla , Parvin Bahram , Tlsty Thea D.
Published: April 2023

PDF file - 1.1MB, Figure S1: Image quantitation Figure S2: Histograms of Oil Red O quantitation in LDAFs and HDAFs Figure S3: Matrix protein immunofluorescent images of LDAFs and HDAFs Figure S4: Increased and decreased expression of CD36 in HMFs Figure S5: CD36 immunohistochemistry controls Figure S6: Histograms of CD36 immunohistochemistry quantitation Figure S7: CD36, CD31 and CD68 staining in serial sections Figure S8: Representative breast map
Supplementary Tables 1-7 from Frequent Alterations and Epigenetic Silencing of Differentiation Pathway Genes in Structurally Rearranged Liposarcomas
Authors: Taylor Barry S. , DeCarolis Penelope L. , Angeles Christina V. , Brenet Fabienne , Schultz Nikolaus , Antonescu Cristina R. , Scandura Joseph M. , Sander Chris , Viale Agnes J. , Socci Nicholas D. , Singer Samuel
Published: April 2023

PDF file - 576K
Interview with Dr. Engelman from BIM Expression in Treatment-Naïve Cancers Predicts Responsiveness to Kinase Inhibitors
Authors: Faber Anthony C. , Corcoran Ryan B. , Ebi Hiromichi , Sequist Lecia V. , Waltman Belinda A. , Chung Euiheon , Incio Joao , Digumarthy Subba R. , Pollack Sarah F. , Song Youngchul , Muzikansky Alona , Lifshits Eugene , Roberge Sylvie , Coffman Erik J. , Benes Cyril H. , Gómez Henry L. , Baselga José , Arteaga Carlos L. , Rivera Miguel N. , Dias-Santagata Dora , Jain Rakesh K. , Engelman Jeffrey A.
Published: April 2023

mp3 file (8.8 MB). In the September edition of the Cancer Discovery podcast, Executive Editor Mark Landis talks with Jeffrey A. Engelman about his paper, which suggests that quantitation of pretreatment RNA levels of the pro-apoptotic factor BIM can predict the efficacy of tyrosine kinase inhibitor therapy in oncogene-addicted cancers.
Supplementary Methods from Histone H3.3 Mutations Drive Pediatric Glioblastoma through Upregulation of MYCN
Authors: Bjerke Lynn , Mackay Alan , Nandhabalan Meera , Burford Anna , Jury Alexa , Popov Sergey , Bax Dorine A. , Carvalho Diana , Taylor Kathryn R. , Vinci Maria , Bajrami Ilirjana , McGonnell Imelda M. , Lord Christopher J. , Reis Rui M. , Hargrave Darren , Ashworth Alan , Workman Paul , Jones Chris
Published: April 2023

PDF file - 120K
Supplementary Figure 1 from Regulatory T-cell Response to Enterotoxigenic Bacteroides fragilis Colonization Triggers IL17-Dependent Colon Carcinogenesis
Authors: Geis Abby L. , Fan Hongni , Wu Xinqun , Wu Shaoguang , Huso David L. , Wolfe Jaime L. , Sears Cynthia L. , Pardoll Drew M. , Housseau Franck
Published: April 2023

Mitigation of IL-17 response to ETBF in absence of Tregs is not restricted to CD4+ (Th17) cells.. B6.Foxp3DTR mice were inoculated with ETBF. Either 150 μl purified sterile H2O or 50 ng/g DT was administered ip on days -2, -1, 1, 3, & 5. Colonic LPLs from each mouse were harvested on day 7. Cells were stimulated ex vivo, followed by ICS. Dot plots show viable LPLs from 1 mouse per group and are representative of 2 experiments.
Supplementary Table 1 from MEK-Dependent Negative Feedback Underlies BCR–ABL-Mediated Oncogene Addiction
Authors: Asmussen Jennifer , Lasater Elisabeth A. , Tajon Cheryl , Oses-Prieto Juan , Jun Young-wook , Taylor Barry S. , Burlingame Alma , Craik Charles S. , Shah Neil P.
Published: April 2023

XLSX file 169K, Phosphoproteomic peptide identities and quantitative changes in response to drug HDP treatment
Supplementary Figure 6 from A Diverse Array of Cancer-Associated MTOR Mutations Are Hyperactivating and Can Predict Rapamycin Sensitivity
Authors: Grabiner Brian C. , Nardi Valentina , Birsoy Kıvanç , Possemato Richard , Shen Kuang , Sinha Sumi , Jordan Alexander , Beck Andrew H. , Sabatini David M.
Published: April 2023

PDF file 154K, Recurrent mTOR mutations mapped onto the crystal structure of mTOR
Supplementary Figure 5 from A Diverse Array of Cancer-Associated MTOR Mutations Are Hyperactivating and Can Predict Rapamycin Sensitivity
Authors: Grabiner Brian C. , Nardi Valentina , Birsoy Kıvanç , Possemato Richard , Shen Kuang , Sinha Sumi , Jordan Alexander , Beck Andrew H. , Sabatini David M.
Published: April 2023

PDF file 73K, mTOR R1208C, V2006L, R2152C, and R2430M fail to confer increased S6K1 phosphorylation
Supplementary Figure 3 from Inflammation-Induced NFATc1–STAT3 Transcription Complex Promotes Pancreatic Cancer Initiation by KrasG12D
Authors: Baumgart Sandra , Chen Nai-Ming , Siveke Jens T. , König Alexander , Zhang Jin-San , Singh Shiv K. , Wolf Elmar , Bartkuhn Marek , Esposito Irene , Heßmann Elisabeth , Reinecke Johanna , Nikorowitsch Julius , Brunner Marius , Singh Garima , Fernandez-Zapico Martin E. , Smyrk Thomas , Bamlet William R. , Eilers Martin , Neesse Albrecht , Gress Thomas M. , Billadeau Daniel D. , Tuveson David , Urrutia Raul , Ellenrieder Volker
Published: April 2023

PDF file 788K, Supplementary Figure 3 refers to Figure 3 and shows STAT3 and NFATc1 expression levels in human and murine pancreatic cancer cell lines as well as NFATc1-dependent STAT3 expression
Supporting Information from Autophagy Opposes p53-Mediated Tumor Barrier to Facilitate Tumorigenesis in a Model of PALB2-Associated Hereditary Breast Cancer
Authors: Huo Yanying , Cai Hong , Teplova Irina , Bowman-Colin Christian , Chen Guanghua , Price Sandy , Barnard Nicola , Ganesan Shridar , Karantza Vassiliki , White Eileen , Xia Bing
Published: April 2023

Supporting information - PDF file 51K, Supplementary Materials and Methods
Supplementary Table S2 from RNA Helicase A Is a Downstream Mediator of KIF1Bβ Tumor-Suppressor Function in Neuroblastoma
Authors: Chen Zhi Xiong , Wallis Karin , Fell Stuart M. , Sobrado Veronica R. , Hemmer Marie C. , Ramsköld Daniel , Hellman Ulf , Sandberg Rickard , Kenchappa Rajappa S. , Martinson Tommy , Johnsen John I. , Kogner Per , Schlisio Susanne
Published: April 2023

PDF file 57K, Table S2, related to Figure 5. Expression values/read counts from list of genes of RNA-SEQ results shown in Figure 5 and S2
Supplementary Table S1 from Induction of Telomere Dysfunction Mediated by the Telomerase Substrate Precursor 6-Thio-2′-Deoxyguanosine
Authors: Mender Ilgen , Gryaznov Sergei , Dikmen Z. Gunnur , Wright Woodring E. , Shay Jerry W.
Published: April 2023

Telomeres and IC50s.
Supplementary Methods from RNA Helicase A Is a Downstream Mediator of KIF1Bβ Tumor-Suppressor Function in Neuroblastoma
Authors: Chen Zhi Xiong , Wallis Karin , Fell Stuart M. , Sobrado Veronica R. , Hemmer Marie C. , Ramsköld Daniel , Hellman Ulf , Sandberg Rickard , Kenchappa Rajappa S. , Martinson Tommy , Johnsen John I. , Kogner Per , Schlisio Susanne
Published: April 2023

PDF file 60K, Supplemental Method of Kaplan Meier overall survival curves related to Supplementary Figure S6D
Supplementary Figure 6 from RNA Helicase A Is a Downstream Mediator of KIF1Bβ Tumor-Suppressor Function in Neuroblastoma
Authors: Chen Zhi Xiong , Wallis Karin , Fell Stuart M. , Sobrado Veronica R. , Hemmer Marie C. , Ramsköld Daniel , Hellman Ulf , Sandberg Rickard , Kenchappa Rajappa S. , Martinson Tommy , Johnsen John I. , Kogner Per , Schlisio Susanne
Published: April 2023

PDF file 5985K, Figure S6, related to Figure 7. DHX9 is localized to the nucleus in mouse sympathetic neurons but not in human neuroblastoma tumors deficient in KIF1Bbeta
Supplementary Figure S1 from Induction of Telomere Dysfunction Mediated by the Telomerase Substrate Precursor 6-Thio-2′-Deoxyguanosine
Authors: Mender Ilgen , Gryaznov Sergei , Dikmen Z. Gunnur , Wright Woodring E. , Shay Jerry W.
Published: April 2023

In vitro cell viability.
Supplementary Methods, Figure Legends, Tables S1, S3 - S6 from Intratumoral Heterogeneity in a Trp53-Null Mouse Model of Human Breast Cancer
Authors: Zhang Mei , Tsimelzon Anna , Chang Chi-Hsuan , Fan Cheng , Wolff Andrew , Perou Charles M. , Hilsenbeck Susan G. , Rosen Jeffrey M.
Published: April 2023

Supplementary Table S1. Partial list of probes preferentially expressed in the Lin-CD29HCD24L cells. Supplementary Table S3. Co-transplantation of increasing numbers of niche cells resulted in increasing numbers of tumors. Supplementary Table S4. a. Pairwise comparisons using fixed number of niche cells displayed a reduced tumor latency with increasing numbers of TICs. b. Pairwise comparisons using 10 TICs demonstrated that tumor formation was more rapid with 10 niche cells as compared to 0. c. Pairwise comparisons using 20 TICs demonstrated that tumor formation was faster with 10 niche cells as compared to 0. Supplementary Table S5. Different types of niche cells were associated with different tumor forming frequencies. Supplementary Table S6. a. No difference observed between shRNA groups for 0 niche cell relative to the control shRNA. b. No difference observed between shRNA groups for 2 niche cells relative to the control shRNA. c. A marginal difference for 10 niche cells relative to the control shRNA. d. A significant difference for 20 niche cells as relative to the control shRNA.
Supplementary Figure S4 from Intratumoral Heterogeneity in a Trp53-Null Mouse Model of Human Breast Cancer
Authors: Zhang Mei , Tsimelzon Anna , Chang Chi-Hsuan , Fan Cheng , Wolff Andrew , Perou Charles M. , Hilsenbeck Susan G. , Rosen Jeffrey M.
Published: April 2023

Supplementary Figure S4. Levels of CXCL12 under different co-culture conditions.
Supplementary Table 1 from Succinate Dehydrogenase Mutation Underlies Global Epigenomic Divergence in Gastrointestinal Stromal Tumor
Authors: Killian J. Keith , Kim Su Young , Miettinen Markku , Smith Carly , Merino Maria , Tsokos Maria , Quezado Martha , Smith William I. , Jahromi Mona S. , Xekouki Paraskevi , Szarek Eva , Walker Robert L. , Lasota Jerzy , Raffeld Mark , Klotzle Brandy , Wang Zengfeng , Jones Laura , Zhu Yuelin , Wang Yonghong , Waterfall Joshua J. , O'Sullivan Maureen J. , Bibikova Marina , Pacak Karel , Stratakis Constantine , Janeway Katherine A. , Schiffman Joshua D. , Fan Jian-Bing , Helman Lee , Meltzer Paul S.
Published: April 2023

Supplementary Table 1 XLS file 22K, Tumors and reference tissues for methylation microarray analysis
Supplementary Figure S3 from Intratumoral Heterogeneity in a Trp53-Null Mouse Model of Human Breast Cancer
Authors: Zhang Mei , Tsimelzon Anna , Chang Chi-Hsuan , Fan Cheng , Wolff Andrew , Perou Charles M. , Hilsenbeck Susan G. , Rosen Jeffrey M.
Published: April 2023

Supplementary Figure S3. Cell cycle analysis of the CD29LCD24H and CD29LCD24L subpopulations.
Supplementary Figure S2 from Intratumoral Heterogeneity in a Trp53-Null Mouse Model of Human Breast Cancer
Authors: Zhang Mei , Tsimelzon Anna , Chang Chi-Hsuan , Fan Cheng , Wolff Andrew , Perou Charles M. , Hilsenbeck Susan G. , Rosen Jeffrey M.
Published: April 2023

Supplementary Figure S2. FACS profile comparison and immunostaining on the p53 null parental tumor and the subsequent TIC- and CD29HCD24L niche subpopulation-derived tumor.
Supplementary Figure S4 from Promotion of Colorectal Cancer Invasion and Metastasis through Activation of NOTCH–DAB1–ABL–RHOGEF Protein TRIO
Authors: Sonoshita Masahiro , Itatani Yoshiro , Kakizaki Fumihiko , Sakimura Kenji , Terashima Toshio , Katsuyama Yu , Sakai Yoshiharu , Taketo M. Mark
Published: April 2023

Supplementary Fig. S4 shows Anti-pY-Trio antibodies. A and B, Validation of specific antibodies for Tyr-phosphorylated Trio.
Supplementary Figure S2 from Promotion of Colorectal Cancer Invasion and Metastasis through Activation of NOTCH–DAB1–ABL–RHOGEF Protein TRIO
Authors: Sonoshita Masahiro , Itatani Yoshiro , Kakizaki Fumihiko , Sakimura Kenji , Terashima Toshio , Katsuyama Yu , Sakai Yoshiharu , Taketo M. Mark
Published: April 2023

Supplementary Fig. S2 shows Knockdown of DAB1 mRNA inhibits metastasis whereas its induction enhances metastasis.