bluuebunny/crossref_metadata_2025 huggingface dataset:
Supplementary Methods, Figure Legends, Tables 1 - 3 from GM-CSF Mediates Mesenchymal–Epithelial Cross-talk in Pancreatic Cancer
Authors: Waghray Meghna , Yalamanchili Malica , Dziubinski Michele , Zeinali Mina , Erkkinen Marguerite , Yang Huibin , Schradle Kara A. , Urs Sumithra , Pasca Di Magliano Marina , Welling Theodore H. , Palmbos Phillip L. , Abel Ethan V. , Sahai Vaibhav , Nagrath Sunitha , Wang Lidong , Simeone Diane M.
Published: April 2023

Supplementary Table 1. Percentage of CA-MSCs (CD44+CD73+CD49Î±+ CD90+) from primary human pancreatic cancer derived CAF cultures and accompanying clinical data. Supplementary Table 2. Extent of local invasion, lung tumor emboli, and liver metastasis in tumors that were derived from injections of tumor cells alone, tumor cells + CAF, and tumor cells + CA-MSCs (n=8 per group) at six weeks post implantation. Supplementary Table 3. Percentage of CD10 expressing CA-MSCs from primary human pancreatic cancer derived CAF cultures.
Supplementary Video S2 from BRD4 Connects Enhancer Remodeling to Senescence Immune Surveillance
Authors: Tasdemir Nilgun , Banito Ana , Roe Jae-Seok , Alonso-Curbelo Direna , Camiolo Matthew , Tschaharganeh Darjus F. , Huang Chun-Hao , Aksoy Ozlem , Bolden Jessica E. , Chen Chi-Chao , Fennell Myles , Thapar Vishal , Chicas Agustin , Vakoc Christopher R. , Lowe Scott W.
Published: April 2023

Co-culture of NK cells and S/shRen IMR90 cells.
Supplementary Figure S6. Ar expression in primary and metastatic tumors. from MYC Drives Pten/Trp53-Deficient Proliferation and Metastasis due to IL6 Secretion and AKT Suppression via PHLPP2
Authors: Nowak Dawid G. , Cho Hyejin , Herzka Tali , Watrud Kaitlin , DeMarco Daniel V. , Wang Victoria M.Y. , Senturk Serif , Fellmann Christof , Ding David , Beinortas Tumas , Kleinman David , Chen Muhan , Sordella Raffaella , Wilkinson John E. , Castillo-Martin Mireia , Cordon-Cardo Carlos , Robinson Brian D. , Trotman Lloyd C.
Published: April 2023

Supplementary Figure S6. Ar expression in primary and metastatic tumors. (A) IHC analysis of the Ar status in RapidCaP lesions shows no significant Ar staining (left panel) while most prostate glands show strong nuclear Ar staining. (B) The wild type and mutant prostates from Probasin-Cre animals show strong Ar staining.
Supplementary Table S4 from CRISPR Screens Provide a Comprehensive Assessment of Cancer Vulnerabilities but Generate False-Positive Hits for Highly Amplified Genomic Regions
Authors: Munoz Diana M. , Cassiani Pamela J. , Li Li , Billy Eric , Korn Joshua M. , Jones Michael D. , Golji Javad , Ruddy David A. , Yu Kristine , McAllister Gregory , DeWeck Antoine , Abramowski Dorothee , Wan Jessica , Shirley Matthew D. , Neshat Sarah Y. , Rakiec Daniel , de Beaumont Rosalie , Weber Odile , Kauffmann Audrey , McDonald E. Robert , Keen Nicholas , Hofmann Francesco , Sellers William R. , Schmelzle Tobias , Stegmeier Frank , Schlabach Michael R.
Published: April 2023

Annotations for the tiling library containing sequences and target gene information.
Supplementary Methods from BLIMP1 Induces Transient Metastatic Heterogeneity in Pancreatic Cancer
Authors: Chiou Shin-Heng , Risca Viviana I. , Wang Gordon X. , Yang Dian , Grüner Barbara M. , Kathiria Arwa S. , Ma Rosanna K. , Vaka Dedeepya , Chu Pauline , Kozak Margaret , Castellini Laura , Graves Edward E. , Kim Grace E. , Mourrain Philippe , Koong Albert C. , Giaccia Amato J. , Winslow Monte M.
Published: April 2023

Supplementary Methods
Supplementary Table S3 from Tracking the Genomic Evolution of Esophageal Adenocarcinoma through Neoadjuvant Chemotherapy
Authors: Murugaesu Nirupa , Wilson Gareth A. , Birkbak Nicolai J. , Watkins Thomas B.K. , McGranahan Nicholas , Kumar Sacheen , Abbassi-Ghadi Nima , Salm Max , Mitter Richard , Horswell Stuart , Rowan Andrew , Phillimore Benjamin , Biggs Jennifer , Begum Sharmin , Matthews Nik , Hochhauser Daniel , Hanna George B. , Swanton Charles
Published: April 2023

Detailed information of candidate driver mutations
Supplementary Tables S1 - S5 from Interaction Landscape of Inherited Polymorphisms with Somatic Events in Cancer
Authors: Carter Hannah , Marty Rachel , Hofree Matan , Gross Andrew M. , Jensen James , Fisch Kathleen M. , Wu Xingyu , DeBoever Christopher , Van Nostrand Eric L. , Song Yan , Wheeler Emily , Kreisberg Jason F. , Lippman Scott M. , Yeo Gene W. , Gutkind J. Silvio , Ideker Trey
Published: April 2023

Supplementary Table 1. Loci associated with tumor site of origin. Supplementary Table 2. GWAS Cancer Associations Re-tested in TCGA. Supplementary Table 3. Loci associated with somatic status of a cancer gene. Supplementary Table 4. TCGA Samples used for Discovery and Validation Tests. Supplementary Table 5. TCGA Samples Used for Alternative Splicing Analysis.
Supplementary Table S1 from Acquired METD1228V Mutation and Resistance to MET Inhibition in Lung Cancer
Authors: Bahcall Magda , Sim Taebo , Paweletz Cloud P. , Patel Jyoti D. , Alden Ryan S. , Kuang Yanan , Sacher Adrian G. , Kim Nam Doo , Lydon Christine A. , Awad Mark M. , Jaklitsch Michael T. , Sholl Lynette M. , Jänne Pasi A. , Oxnard Geoffrey R.
Published: April 2023

Supplementary Table S1 shows variants identified in pre-treatment and post-treatment tumor targeted next-generation sequencing (NGS).
Supplementary Figure S1 from The ALK/ROS1 Inhibitor PF-06463922 Overcomes Primary Resistance to Crizotinib in ALK-Driven Neuroblastoma
Authors: Infarinato Nicole R. , Park Jin H. , Krytska Kateryna , Ryles Hannah T. , Sano Renata , Szigety Katherine M. , Li Yimei , Zou Helen Y. , Lee Nathan V. , Smeal Tod , Lemmon Mark A. , Mossé Yael P.
Published: April 2023

PF-06463922 is well tolerated in mice.
Supplemental Methods from The BTK Inhibitor ARQ 531 Targets Ibrutinib-Resistant CLL and Richter Transformation
Authors: Reiff Sean D. , Mantel Rose , Smith Lisa L. , Greene J.T. , Muhowski Elizabeth M. , Fabian Catherine A. , Goettl Virginia M. , Tran Minh , Harrington Bonnie K. , Rogers Kerry A. , Awan Farrukh T. , Maddocks Kami , Andritsos Leslie , Lehman Amy M. , Sampath Deepa , Lapalombella Rosa , Eathiraj Sudharshan , Abbadessa Giovanni , Schwartz Brian , Johnson Amy J. , Byrd John C. , Woyach Jennifer A.
Published: April 2023

methods
Supplementary Data from PTEN Methylation by NSD2 Controls Cellular Sensitivity to DNA Damage
Authors: Zhang Jinfang , Lee Yu-Ru , Dang Fabin , Gan Wenjian , Menon Archita Venugopal , Katon Jesse M. , Hsu Chih-Hung , Asara John M. , Tibarewal Priyanka , Leslie Nicholas R. , Shi Yang , Pandolfi Pier Paolo , Wei Wenyi
Published: April 2023

Supplemental Figures S1-S6
Table S1 from A Transposon Screen Identifies Loss of Primary Cilia as a Mechanism of Resistance to SMO Inhibitors
Authors: Zhao Xuesong , Pak Ekaterina , Ornell Kimberly J. , Pazyra-Murphy Maria F. , MacKenzie Ethan L. , Chadwick Emily J. , Ponomaryov Tatyana , Kelleher Joseph F. , Segal Rosalind A.
Published: April 2023

Supplementary Table S1, related to Figure 1. A total of 182 transposon insertions were identified in 27 resistant clones. Provided as a separate Excel file
Supplementary Table S1 from IL1-Induced JAK/STAT Signaling Is Antagonized by TGFβ to Shape CAF Heterogeneity in Pancreatic Ductal Adenocarcinoma
Authors: Biffi Giulia , Oni Tobiloba E. , Spielman Benjamin , Hao Yuan , Elyada Ela , Park Youngkyu , Preall Jonathan , Tuveson David A.
Published: April 2023

DNA motif analysis
Supplementary Data from IL1-Induced JAK/STAT Signaling Is Antagonized by TGFβ to Shape CAF Heterogeneity in Pancreatic Ductal Adenocarcinoma
Authors: Biffi Giulia , Oni Tobiloba E. , Spielman Benjamin , Hao Yuan , Elyada Ela , Park Youngkyu , Preall Jonathan , Tuveson David A.
Published: April 2023

Supplementary Figure legends
Combined Supplementary Figures from IL1-Induced JAK/STAT Signaling Is Antagonized by TGFβ to Shape CAF Heterogeneity in Pancreatic Ductal Adenocarcinoma
Authors: Biffi Giulia , Oni Tobiloba E. , Spielman Benjamin , Hao Yuan , Elyada Ela , Park Youngkyu , Preall Jonathan , Tuveson David A.
Published: April 2023

Supplementary Figures S1-S8
Supplementary Table S3 from CD38-Mediated Immunosuppression as a Mechanism of Tumor Cell Escape from PD-1/PD-L1 Blockade
Authors: Chen Limo , Diao Lixia , Yang Yongbin , Yi Xiaohui , Rodriguez B. Leticia , Li Yanli , Villalobos Pamela A. , Cascone Tina , Liu Xi , Tan Lin , Lorenzi Philip L. , Huang Anfei , Zhao Qiang , Peng Di , Fradette Jared J. , Peng David H. , Ungewiss Christin , Roybal Jonathon , Tong Pan , Oba Junna , Skoulidis Ferdinandos , Peng Weiyi , Carter Brett W. , Gay Carl M. , Fan Youhong , Class Caleb A. , Zhu Jingfen , Rodriguez-Canales Jaime , Kawakami Masanori , Byers Lauren Averett , Woodman Scott E. , Papadimitrakopoulou Vassiliki A. , Dmitrovsky Ethan , Wang Jing , Ullrich Stephen E. , Wistuba Ignacio I. , Heymach John V. , Qin F. Xiao-Feng , Gibbons Don L.
Published: April 2023

Top 100 upregulated genes after anti-PD-L1 treatment.
Supplementary files from MEF2C Phosphorylation Is Required for Chemotherapy Resistance in Acute Myeloid Leukemia
Authors: Brown Fiona C. , Still Eric , Koche Richard P. , Yim Christina Y. , Takao Sumiko , Cifani Paolo , Reed Casie , Gunasekera Shehana , Ficarro Scott B. , Romanienko Peter , Mark Willie , McCarthy Craig , de Stanchina Elisa , Gonen Mithat , Seshan Venkatraman , Bhola Patrick , O'Donnell Conor , Spitzer Barbara , Stutzke Crystal , Lavallée Vincent-Philippe , Hébert Josée , Krivtsov Andrei V. , Melnick Ari , Paietta Elisabeth M. , Tallman Martin S. , Letai Anthony , Sauvageau Guy , Pouliot Gayle , Levine Ross , Marto Jarrod A , Armstrong Scott A. , Kentsis Alex
Published: April 2023

Extended methods, supplementary figures and supplementary tables.
Supplementary tables from Transcriptomic Profiling of the Tumor Microenvironment Reveals Distinct Subgroups of Clear Cell Renal Cell Cancer: Data from a Randomized Phase III Trial
Authors: Hakimi A. Ari , Voss Martin H. , Kuo Fengshen , Sanchez Alejandro , Liu Ming , Nixon Briana G. , Vuong Lynda , Ostrovnaya Irina , Chen Ying-Bei , Reuter Victor , Riaz Nadeem , Cheng Yuan , Patel Parul , Marker Mahtab , Reising Albert , Li Ming O. , Chan Timothy A. , Motzer Robert J.
Published: April 2023

Supplementary tables
Data S1 from MEF2C Phosphorylation Is Required for Chemotherapy Resistance in Acute Myeloid Leukemia
Authors: Brown Fiona C. , Still Eric , Koche Richard P. , Yim Christina Y. , Takao Sumiko , Cifani Paolo , Reed Casie , Gunasekera Shehana , Ficarro Scott B. , Romanienko Peter , Mark Willie , McCarthy Craig , de Stanchina Elisa , Gonen Mithat , Seshan Venkatraman , Bhola Patrick , O'Donnell Conor , Spitzer Barbara , Stutzke Crystal , Lavallée Vincent-Philippe , Hébert Josée , Krivtsov Andrei V. , Melnick Ari , Paietta Elisabeth M. , Tallman Martin S. , Letai Anthony , Sauvageau Guy , Pouliot Gayle , Levine Ross , Marto Jarrod A , Armstrong Scott A. , Kentsis Alex
Published: April 2023

Table of phosphopeptides identified in a screen for primary induction failure compared to complete remission AML
Supplementary Tables from A Preexisting Rare PIK3CAE545K Subpopulation Confers Clinical Resistance to MEK plus CDK4/6 Inhibition in NRAS Melanoma and Is Dependent on S6K1 Signaling
Authors: Romano Gabriele , Chen Pei-Ling , Song Ping , McQuade Jennifer L. , Liang Roger J. , Liu Mingguang , Roh Whijae , Duose Dzifa Y. , Carapeto Fernando C.L. , Li Jun , Teh Jessica L.F. , Aplin Andrew E. , Chen Merry , Zhang Jianhua , Lazar Alexander J. , Davies Michael A. , Futreal P. Andrew , Amaria Rodabe N. , Zhang David Y. , Wargo Jennifer A. , Kwong Lawrence N.
Published: April 2023

Supplementary Tables S1-S5
Supplemental Table 5 from Adipocyte-Derived Lipids Mediate Melanoma Progression via FATP Proteins
Authors: Zhang Maomao , Di Martino Julie S. , Bowman Robert L. , Campbell Nathaniel R. , Baksh Sanjeethan C. , Simon-Vermot Theresa , Kim Isabella S. , Haldeman Pearce , Mondal Chandrani , Yong-Gonzales Vladimir , Abu-Akeel Mohsen , Merghoub Taha , Jones Drew R. , Zhu Xiphias Ge , Arora Arshi , Ariyan Charlotte E. , Birsoy Kivanç , Wolchok Jedd D. , Panageas Katherine S. , Hollmann Travis , Bravo-Cordero Jose Javier , White Richard M.
Published: April 2023

ZMEL in vivo lipidomics
Supplementary Figures 1-9, Table 1, Methods from EGFR-Mediated Reactivation of MAPK Signaling Contributes to Insensitivity of BRAF-Mutant Colorectal Cancers to RAF Inhibition with Vemurafenib
Authors: Corcoran Ryan B. , Ebi Hiromichi , Turke Alexa B. , Coffee Erin M. , Nishino Michiya , Cogdill Alexandria P. , Brown Ronald D. , Della Pelle Patricia , Dias-Santagata Dora , Hung Kenneth E. , Flaherty Keith T. , Piris Adriano , Wargo Jennifer A. , Settleman Jeffrey , Mino-Kenudson Mari , Engelman Jeffrey A.
Published: April 2023

PDF file - 417K
Supplementary Methods from Sequential ALK Inhibitors Can Select for Lorlatinib-Resistant Compound ALK Mutations in ALK-Positive Lung Cancer
Authors: Yoda Satoshi , Lin Jessica J. , Lawrence Michael S. , Burke Benjamin J. , Friboulet Luc , Langenbucher Adam , Dardaei Leila , Prutisto-Chang Kylie , Dagogo-Jack Ibiayi , Timofeevski Sergei , Hubbeling Harper , Gainor Justin F. , Ferris Lorin A. , Riley Amanda K. , Kattermann Krystina E. , Timonina Daria , Heist Rebecca S. , Iafrate A. John , Benes Cyril H. , Lennerz Jochen K. , Mino-Kenudson Mari , Engelman Jeffrey A. , Johnson Ted W. , Hata Aaron N. , Shaw Alice T.
Published: April 2023

Supplementary Methods include Enzyme Kinetic Assays and Computational Methods.
Table S1 from Suppression of STING Associated with LKB1 Loss in KRAS-Driven Lung Cancer
Authors: Kitajima Shunsuke , Ivanova Elena , Guo Sujuan , Yoshida Ryohei , Campisi Marco , Sundararaman Shriram K. , Tange Shoichiro , Mitsuishi Yoichiro , Thai Tran C. , Masuda Sayuri , Piel Brandon P. , Sholl Lynette M. , Kirschmeier Paul T. , Paweletz Cloud P. , Watanabe Hideo , Yajima Mamiko , Barbie David A.
Published: April 2023

Table S1 shows list of TCGA IDs of KP and KL lung adenocarcinoma patients related with figure 1.
MAF file for CNVs from Real-time Genomic Characterization of Advanced Pancreatic Cancer to Enable Precision Medicine
Authors: Aguirre Andrew J. , Nowak Jonathan A. , Camarda Nicholas D. , Moffitt Richard A. , Ghazani Arezou A. , Hazar-Rethinam Mehlika , Raghavan Srivatsan , Kim Jaegil , Brais Lauren K. , Ragon Dorisanne , Welch Marisa W. , Reilly Emma , McCabe Devin , Marini Lori , Anderka Kristin , Helvie Karla , Oliver Nelly , Babic Ana , Da Silva Annacarolina , Nadres Brandon , Van Seventer Emily E. , Shahzade Heather A. , St. Pierre Joseph P. , Burke Kelly P. , Clancy Thomas , Cleary James M. , Doyle Leona A. , Jajoo Kunal , McCleary Nadine J. , Meyerhardt Jeffrey A. , Murphy Janet E. , Ng Kimmie , Patel Anuj K. , Perez Kimberly , Rosenthal Michael H. , Rubinson Douglas A. , Ryou Marvin , Shapiro Geoffrey I. , Sicinska Ewa , Silverman Stuart G. , Nagy Rebecca J. , Lanman Richard B. , Knoerzer Deborah , Welsch Dean J. , Yurgelun Matthew B. , Fuchs Charles S. , Garraway Levi A. , Getz Gad , Hornick Jason L. , Johnson Bruce E. , Kulke Matthew H. , Mayer Robert J. , Miller Jeffrey W. , Shyn Paul B. , Tuveson David A. , Wagle Nikhil , Yeh Jen Jen , Hahn William C. , Corcoran Ryan B. , Carter Scott L. , Wolpin Brian M.
Published: April 2023

MAF file for copy number variations identified in the cohort
Supplementary Table 5 from Patient-Driven Discovery, Therapeutic Targeting, and Post-Clinical Validation of a Novel AKT1 Fusion–Driven Cancer
Authors: Slotkin Emily K. , Diolaiti Daniel , Shukla Neerav N. , Dela Cruz Filemon S. , Clark Jennifer J. , Gundem Gunes , Yellapantula Venkata D. , Levine Max F. , You Daoqi , Ma Peilin , Pachhal Sagarika , Ibanez Sanchez Glorymar , Benayed Ryma , Jungbluth Achim A. , Smyth Lillian M. , Mauguen Audrey , Gushterova Irena , Ding Hongxu , Spraggon Lee , Darnell Robert , Califano Andrea , Ladanyi Marc , Papaemmanuil Elli , Kung Andrew L. , Hyman David M. , Roberts Stephen S.
Published: April 2023

Supplementary Table 5
Supplementary Table 2 from Patient-Driven Discovery, Therapeutic Targeting, and Post-Clinical Validation of a Novel AKT1 Fusion–Driven Cancer
Authors: Slotkin Emily K. , Diolaiti Daniel , Shukla Neerav N. , Dela Cruz Filemon S. , Clark Jennifer J. , Gundem Gunes , Yellapantula Venkata D. , Levine Max F. , You Daoqi , Ma Peilin , Pachhal Sagarika , Ibanez Sanchez Glorymar , Benayed Ryma , Jungbluth Achim A. , Smyth Lillian M. , Mauguen Audrey , Gushterova Irena , Ding Hongxu , Spraggon Lee , Darnell Robert , Califano Andrea , Ladanyi Marc , Papaemmanuil Elli , Kung Andrew L. , Hyman David M. , Roberts Stephen S.
Published: April 2023

Supplementary Table 2
Supplementary Data from Patient-Driven Discovery, Therapeutic Targeting, and Post-Clinical Validation of a Novel AKT1 Fusion–Driven Cancer
Authors: Slotkin Emily K. , Diolaiti Daniel , Shukla Neerav N. , Dela Cruz Filemon S. , Clark Jennifer J. , Gundem Gunes , Yellapantula Venkata D. , Levine Max F. , You Daoqi , Ma Peilin , Pachhal Sagarika , Ibanez Sanchez Glorymar , Benayed Ryma , Jungbluth Achim A. , Smyth Lillian M. , Mauguen Audrey , Gushterova Irena , Ding Hongxu , Spraggon Lee , Darnell Robert , Califano Andrea , Ladanyi Marc , Papaemmanuil Elli , Kung Andrew L. , Hyman David M. , Roberts Stephen S.
Published: April 2023

Supplementary Figures and Legends
Supplementary Data from The Mechanism of Anti–PD-L1 Antibody Efficacy against PD-L1–Negative Tumors Identifies NK Cells Expressing PD-L1 as a Cytolytic Effector
Authors: Dong Wenjuan , Wu Xiaojin , Ma Shoubao , Wang Yufeng , Nalin Ansel P. , Zhu Zheng , Zhang Jianying , Benson Don M. , He Kai , Caligiuri Michael A. , Yu Jianhua
Published: April 2023

Supplementary figures and figure legends as well as supplementary methods and materials
Table S7 from Cross-Cohort Analysis Identifies a TEAD4–MYCN Positive Feedback Loop as the Core Regulatory Element of High-Risk Neuroblastoma
Authors: Rajbhandari Presha , Lopez Gonzalo , Capdevila Claudia , Salvatori Beatrice , Yu Jiyang , Rodriguez-Barrueco Ruth , Martinez Daniel , Yarmarkovich Mark , Weichert-Leahey Nina , Abraham Brian J. , Alvarez Mariano J. , Iyer Archana , Harenza Jo Lynne , Oldridge Derek , De Preter Katleen , Koster Jan , Asgharzadeh Shahab , Seeger Robert C. , Wei Jun S. , Khan Javed , Vandesompele Jo , Mestdagh Pieter , Versteeg Rogier , Look A. Thomas , Young Richard A. , Iavarone Antonio , Lasorella Anna , Silva Jose M. , Maris John M. , Califano Andrea
Published: April 2023

RNA-seq derived signatures and pathway analysis from shTEAD4, shMYCN ans shWWTR1
Table S5 from Cross-Cohort Analysis Identifies a TEAD4–MYCN Positive Feedback Loop as the Core Regulatory Element of High-Risk Neuroblastoma
Authors: Rajbhandari Presha , Lopez Gonzalo , Capdevila Claudia , Salvatori Beatrice , Yu Jiyang , Rodriguez-Barrueco Ruth , Martinez Daniel , Yarmarkovich Mark , Weichert-Leahey Nina , Abraham Brian J. , Alvarez Mariano J. , Iyer Archana , Harenza Jo Lynne , Oldridge Derek , De Preter Katleen , Koster Jan , Asgharzadeh Shahab , Seeger Robert C. , Wei Jun S. , Khan Javed , Vandesompele Jo , Mestdagh Pieter , Versteeg Rogier , Look A. Thomas , Young Richard A. , Iavarone Antonio , Lasorella Anna , Silva Jose M. , Maris John M. , Califano Andrea
Published: April 2023

RNAi screening to identify MYCNA subtype specific MRs
Supplementary Table S12-14 from Molecular and Genetic Characterization of MHC Deficiency Identifies EZH2 as Therapeutic Target for Enhancing Immune Recognition
Authors: Ennishi Daisuke , Takata Katsuyoshi , Béguelin Wendy , Duns Gerben , Mottok Anja , Farinha Pedro , Bashashati Ali , Saberi Saeed , Boyle Merrill , Meissner Barbara , Ben-Neriah Susana , Woolcock Bruce W. , Telenius Adèle , Lai Daniel , Teater Matt , Kridel Robert , Savage Kerry J. , Sehn Laurie H. , Morin Ryan D. , Marra Marco A. , Shah Sohrab P. , Connors Joseph M. , Gascoyne Randy D. , Scott David W. , Melnick Ari M. , Steidl Christian
Published: April 2023

Genetic analysis in the MHC-I/II double-positive cases
Supplementary Table S10 from Molecular and Genetic Characterization of MHC Deficiency Identifies EZH2 as Therapeutic Target for Enhancing Immune Recognition
Authors: Ennishi Daisuke , Takata Katsuyoshi , Béguelin Wendy , Duns Gerben , Mottok Anja , Farinha Pedro , Bashashati Ali , Saberi Saeed , Boyle Merrill , Meissner Barbara , Ben-Neriah Susana , Woolcock Bruce W. , Telenius Adèle , Lai Daniel , Teater Matt , Kridel Robert , Savage Kerry J. , Sehn Laurie H. , Morin Ryan D. , Marra Marco A. , Shah Sohrab P. , Connors Joseph M. , Gascoyne Randy D. , Scott David W. , Melnick Ari M. , Steidl Christian
Published: April 2023

EZH2 mutation data
Supplementary Data from The AMPK-Related Kinases SIK1 and SIK3 Mediate Key Tumor-Suppressive Effects of LKB1 in NSCLC
Authors: Hollstein Pablo E. , Eichner Lillian J. , Brun Sonja N. , Kamireddy Anwesh , Svensson Robert U. , Vera Liliana I. , Ross Debbie S. , Rymoff T.J. , Hutchins Amanda , Galvez Hector M. , Williams April E. , Shokhirev Maxim N. , Screaton Robert A. , Berdeaux Rebecca , Shaw Reuben J.
Published: April 2023

Supplemental Data
Supplementary Methods Tables from Phf6 Loss Enhances HSC Self-Renewal Driving Tumor Initiation and Leukemia Stem Cell Activity in T-ALL
Authors: Wendorff Agnieszka A. , Quinn S. Aidan , Rashkovan Marissa , Madubata Chioma J. , Ambesi-Impiombato Alberto , Litzow Mark R. , Tallman Martin S. , Paietta Elisabeth , Paganin Maddalena , Basso Giuseppe , Gastier-Foster Julie M. , Loh Mignon L. , Rabadan Raul , Van Vlierberghe Pieter , Ferrando Adolfo A.
Published: April 2023

Supplementary Methods Tables 1 and 2
Supplementary Data from Phf6 Loss Enhances HSC Self-Renewal Driving Tumor Initiation and Leukemia Stem Cell Activity in T-ALL
Authors: Wendorff Agnieszka A. , Quinn S. Aidan , Rashkovan Marissa , Madubata Chioma J. , Ambesi-Impiombato Alberto , Litzow Mark R. , Tallman Martin S. , Paietta Elisabeth , Paganin Maddalena , Basso Giuseppe , Gastier-Foster Julie M. , Loh Mignon L. , Rabadan Raul , Van Vlierberghe Pieter , Ferrando Adolfo A.
Published: April 2023

Supplementary Figures 1-8
Interview with Dr. Tuveson from nab-Paclitaxel Potentiates Gemcitabine Activity by Reducing Cytidine Deaminase Levels in a Mouse Model of Pancreatic Cancer
Authors: Frese Kristopher K. , Neesse Albrecht , Cook Natalie , Bapiro Tashinga E. , Lolkema Martijn P. , Jodrell Duncan I. , Tuveson David A.
Published: April 2023

mp3 file (10 MB). In the March edition of the Cancer Discovery podcast, Executive Editor Mark Landis talks with David A. Tuveson about his paper, which provides mechanistic insight into the clinical cooperation observed between gemcitabine and nab-paclitaxel in the treatment of pancreatic cancer.
Figure S1 from Galectin-3, a Druggable Vulnerability for KRAS-Addicted Cancers
Authors: Seguin Laetitia , Camargo Maria F. , Wettersten Hiromi I. , Kato Shumei , Desgrosellier Jay S. , von Schalscha Tami , Elliott Kathryn C. , Cosset Erika , Lesperance Jacqueline , Weis Sara M. , Cheresh David A.
Published: April 2023

Supplement to Figure 1
Supplementary Table from Lower Airway Dysbiosis Affects Lung Cancer Progression
Authors: Tsay Jun-Chieh J. , Wu Benjamin G. , Sulaiman Imran , Gershner Katherine , Schluger Rosemary , Li Yonghua , Yie Ting-An , Meyn Peter , Olsen Evan , Perez Luisannay , Franca Brendan , Carpenito Joseph , Iizumi Tadasu , El-Ashmawy Mariam , Badri Michelle , Morton James T. , Shen Nan , He Linchen , Michaud Gaetane , Rafeq Samaan , Bessich Jamie L. , Smith Robert L. , Sauthoff Harald , Felner Kevin , Pillai Ray , Zavitsanou Anastasia-Maria , Koralov Sergei B. , Mezzano Valeria , Loomis Cynthia A. , Moreira Andre L. , Moore William , Tsirigos Aristotelis , Heguy Adriana , Rom William N. , Sterman Daniel H. , Pass Harvey I. , Clemente Jose C. , Li Huilin , Bonneau Richard , Wong Kwok-Kin , Papagiannakopoulos Thales , Segal Leopoldo N.
Published: April 2023

Supplementary Table
Supplementary Table S3 from Relapse-Fated Latent Diagnosis Subclones in Acute B Lineage Leukemia Are Drug Tolerant and Possess Distinct Metabolic Programs
Authors: Dobson Stephanie M. , García-Prat Laura , Vanner Robert J. , Wintersinger Jeffrey , Waanders Esmé , Gu Zhaohui , McLeod Jessica , Gan Olga I. , Grandal Ildiko , Payne-Turner Debbie , Edmonson Michael N. , Ma Xiaotu , Fan Yiping , Voisin Veronique , Chan-Seng-Yue Michelle , Xie Stephanie Z. , Hosseini Mohsen , Abelson Sagi , Gupta Pankaj , Rusch Michael , Shao Ying , Olsen Scott R. , Neale Geoffrey , Chan Steven M. , Bader Gary , Easton John , Guidos Cynthia J. , Danska Jayne S. , Zhang Jinghui , Minden Mark D. , Morris Quaid , Mullighan Charles G. , Dick John E.
Published: April 2023

Targeted-sequencing analysis of PDX and PairTree predicted mutational population clusters
Supplementary Data S3 from Disabled Homolog 2 Controls Prometastatic Activity of Tumor-Associated Macrophages
Authors: Marigo Ilaria , Trovato Rosalinda , Hofer Francesca , Ingangi Vincenzo , De Sanctis Francesco , Ugel Stefano , Canè Stefania , Simonelli Anna , Lamolinara Alessia , Iezzi Manuela , Fassan Matteo , Rugge Massimo , Boschi Federico , Borile Giulia , Eisenhaure Thomas , Sarkizova Siranush , Lieb David , Hacohen Nir , Azzolin Luca , Piccolo Stefano , Lawlor Rita , Scarpa Aldo , Carbognin Luisa , Bria Emilio , Bicciato Silvio , Murray Peter J. , Bronte Vincenzo
Published: April 2023

Description of the functional status of WT and Dab2 KO macrophages. Related to Fig. 1C-D
CD-20-0142R1_Supplementary_Table_S7.xlsx from BI-3406, a Potent and Selective SOS1–KRAS Interaction Inhibitor, Is Effective in KRAS-Driven Cancers through Combined MEK Inhibition
Authors: Hofmann Marco H. , Gmachl Michael , Ramharter Juergen , Savarese Fabio , Gerlach Daniel , Marszalek Joseph R. , Sanderson Michael P. , Kessler Dirk , Trapani Francesca , Arnhof Heribert , Rumpel Klaus , Botesteanu Dana-Adriana , Ettmayer Peter , Gerstberger Thomas , Kofink Christiane , Wunberg Tobias , Zoephel Andreas , Fu Szu-Chin , Teh Jessica L. , Böttcher Jark , Pototschnig Nikolai , Schachinger Franziska , Schipany Katharina , Lieb Simone , Vellano Christopher P. , O'Connell Jonathan C. , Mendes Rachel L. , Moll Jurgen , Petronczki Mark , Heffernan Timothy P. , Pearson Mark , McConnell Darryl B. , Kraut Norbert
Published: April 2023

Table S7
CD-20-0142R1_Supplementary_Table_S2.xlsx from BI-3406, a Potent and Selective SOS1–KRAS Interaction Inhibitor, Is Effective in KRAS-Driven Cancers through Combined MEK Inhibition
Authors: Hofmann Marco H. , Gmachl Michael , Ramharter Juergen , Savarese Fabio , Gerlach Daniel , Marszalek Joseph R. , Sanderson Michael P. , Kessler Dirk , Trapani Francesca , Arnhof Heribert , Rumpel Klaus , Botesteanu Dana-Adriana , Ettmayer Peter , Gerstberger Thomas , Kofink Christiane , Wunberg Tobias , Zoephel Andreas , Fu Szu-Chin , Teh Jessica L. , Böttcher Jark , Pototschnig Nikolai , Schachinger Franziska , Schipany Katharina , Lieb Simone , Vellano Christopher P. , O'Connell Jonathan C. , Mendes Rachel L. , Moll Jurgen , Petronczki Mark , Heffernan Timothy P. , Pearson Mark , McConnell Darryl B. , Kraut Norbert
Published: April 2023

Table S2
Supplementary Figures from Myeloid-Derived Suppressor Cell Subsets Drive Glioblastoma Growth in a Sex-Specific Manner
Authors: Bayik Defne , Zhou Yadi , Park Chihyun , Hong Changjin , Vail Daniel , Silver Daniel J. , Lauko Adam , Roversi Gustavo , Watson Dionysios C. , Lo Alice , Alban Tyler J. , McGraw Mary , Sorensen Mia , Grabowski Matthew M. , Otvos Balint , Vogelbaum Michael A. , Horbinski Craig , Kristensen Bjarne Winther , Khalil Ahmad M. , Hwang Tae Hyun , Ahluwalia Manmeet S. , Cheng Feixiong , Lathia Justin D.
Published: April 2023

Supplementary Figures 1-9
AACR COVID-19 and Cancer Task Force from Priority COVID-19 Vaccination for Patients with Cancer while Vaccine Supply Is Limited
Authors: Ribas Antoni , Sengupta Rajarshi , Locke Trevan , Zaidi Sayyed Kaleem , Campbell Katie M. , Carethers John M. , Jaffee Elizabeth M. , Wherry E. John , Soria Jean-Charles , D'Souza Gypsyamber
Published: April 2023

AACR COVID-19 and Cancer Task Force
Supplementary Tables from Selective Inhibition of HDAC3 Targets Synthetic Vulnerabilities and Activates Immune Surveillance in Lymphoma
Authors: Mondello Patrizia , Tadros Saber , Teater Matt , Fontan Lorena , Chang Aaron Y. , Jain Neeraj , Yang Haopeng , Singh Shailbala , Ying Hsia-Yuan , Chu Chi-Shuen , Ma Man Chun John , Toska Eneda , Alig Stefan , Durant Matthew , de Stanchina Elisa , Ghosh Sreejoyee , Mottok Anja , Nastoupil Loretta , Neelapu Sattva S. , Weigert Oliver , Inghirami Giorgio , Baselga José , Younes Anas , Yee Cassian , Dogan Ahmet , Scheinberg David A. , Roeder Robert G. , Melnick Ari M. , Green Michael R.
Published: April 2023

Tables S1 - S13
Supplementary Methods, Figure S1-16, Table S1, S4-7, S9 from Somatic Mutations Drive Specific, but Reversible, Epigenetic Heterogeneity States in AML
Authors: Li Sheng , Chen Xiaowen , Wang Jiahui , Meydan Cem , Glass Jacob L. , Shih Alan H. , Delwel Ruud , Levine Ross L. , Mason Christopher E. , Melnick Ari M.
Published: April 2023

Supplementary Methods, Figure S1-16, Table S1, S4-7, S9
Supplementary Table 1 from EZH2-Deficient T-cell Acute Lymphoblastic Leukemia Is Sensitized to CHK1 Inhibition through Enhanced Replication Stress
Authors: León Theresa E. , Rapoz-D'Silva Tanya , Bertoli Cosetta , Rahman Sunniyat , Magnussen Michael , Philip Brian , Farah Nadine , Richardson Simon E. , Ahrabi Sara , Guerra-Assunção José Afonso , Gupta Rajeev , Nacheva Elisabeth P. , Henderson Stephen , Herrero Javier , Linch David C. , de Bruin Robertus A.M. , Mansour Marc R.
Published: April 2023

Supplementary Table 1: List of the main targets and number of probes included in the small-molecule inhibitors library (related to Fig. 1)
CD-20-0047R2_Supplementary_Figure_6.pdf from Prognostic and Predictive Impact of Circulating Tumor DNA in Patients with Advanced Cancers Treated with Immune Checkpoint Blockade
Authors: Zhang Qu , Luo Jia , Wu Song , Si Han , Gao Chen , Xu Wenjing , Abdullah Shaad E. , Higgs Brandon W. , Dennis Phillip A. , van der Heijden Michiel S. , Segal Neil H. , Chaft Jamie E. , Hembrough Todd , Barrett J. Carl , Hellmann Matthew D.
Published: April 2023

Figure S6
Supplementary Data from The Genomic Landscape of Intrinsic and Acquired Resistance to Cyclin-Dependent Kinase 4/6 Inhibitors in Patients with Hormone Receptor–Positive Metastatic Breast Cancer
Authors: Wander Seth A. , Cohen Ofir , Gong Xueqian , Johnson Gabriela N. , Buendia-Buendia Jorge E. , Lloyd Maxwell R. , Kim Dewey , Luo Flora , Mao Pingping , Helvie Karla , Kowalski Kailey J. , Nayar Utthara , Waks Adrienne G. , Parsons Stephen H. , Martinez Ricardo , Litchfield Lacey M. , Ye Xiang S. , Yu Chunping , Jansen Valerie M. , Stille John R. , Smith Patricia S. , Oakley Gerard J. , Chu Quincy S. , Batist Gerald , Hughes Melissa E. , Kremer Jill D. , Garraway Levi A. , Winer Eric P. , Tolaney Sara M. , Lin Nancy U. , Buchanan Sean G. , Wagle Nikhil
Published: April 2023

Supplementary material
Supplemental Figure 8 from The Genomic Landscape of Intrinsic and Acquired Resistance to Cyclin-Dependent Kinase 4/6 Inhibitors in Patients with Hormone Receptor–Positive Metastatic Breast Cancer
Authors: Wander Seth A. , Cohen Ofir , Gong Xueqian , Johnson Gabriela N. , Buendia-Buendia Jorge E. , Lloyd Maxwell R. , Kim Dewey , Luo Flora , Mao Pingping , Helvie Karla , Kowalski Kailey J. , Nayar Utthara , Waks Adrienne G. , Parsons Stephen H. , Martinez Ricardo , Litchfield Lacey M. , Ye Xiang S. , Yu Chunping , Jansen Valerie M. , Stille John R. , Smith Patricia S. , Oakley Gerard J. , Chu Quincy S. , Batist Gerald , Hughes Melissa E. , Kremer Jill D. , Garraway Levi A. , Winer Eric P. , Tolaney Sara M. , Lin Nancy U. , Buchanan Sean G. , Wagle Nikhil
Published: April 2023

Figure S8
Supplementary Data from Single-Cell Transcriptome Analysis Reveals Disease-Defining T-cell Subsets in the Tumor Microenvironment of Classic Hodgkin Lymphoma
Authors: Aoki Tomohiro , Chong Lauren C. , Takata Katsuyoshi , Milne Katy , Hav Monirath , Colombo Anthony , Chavez Elizabeth A. , Nissen Michael , Wang Xuehai , Miyata-Takata Tomoko , Lam Vivian , Viganò Elena , Woolcock Bruce W. , Telenius Adèle , Li Michael Y. , Healy Shannon , Ghesquiere Chanel , Kos Daniel , Goodyear Talia , Veldman Johanna , Zhang Allen W. , Kim Jubin , Saberi Saeed , Ding Jiarui , Farinha Pedro , Weng Andrew P. , Savage Kerry J. , Scott David W. , Krystal Gerald , Nelson Brad H. , Mottok Anja , Merchant Akil , Shah Sohrab P. , Steidl Christian
Published: April 2023

Supplementary Methods, Supplementary Figures 1-19, Supplementary References
Table S1 from Triplet Therapy with Palbociclib, Taselisib, and Fulvestrant in PIK3CA-Mutant Breast Cancer and Doublet Palbociclib and Taselisib in Pathway-Mutant Solid Cancers
Authors: Pascual Javier , Lim Joline S.J. , Macpherson Iain R. , Armstrong Anne C. , Ring Alistair , Okines Alicia F.C. , Cutts Rosalind J. , Herrera-Abreu Maria Teresa , Garcia-Murillas Isaac , Pearson Alex , Hrebien Sarah , Gevensleben Heidrun , Proszek Paula Z. , Hubank Michael , Hills Margaret , King Jenny , Parmar Mona , Prout Toby , Finneran Laura , Malia Jason , Swales Karen E. , Ruddle Ruth , Raynaud Florence I. , Turner Alison , Hall Emma , Yap Timothy A. , Lopez Juanita S. , Turner Nicholas C.
Published: April 2023

RMH200 panel design
Supplementary File 1 from Interferon Signaling Is Diminished with Age and Is Associated with Immune Checkpoint Blockade Efficacy in Triple-Negative Breast Cancer
Authors: Sceneay Jaclyn , Goreczny Gregory J. , Wilson Kristin , Morrow Sara , DeCristo Molly J. , Ubellacker Jessalyn M. , Qin Yuanbo , Laszewski Tyler , Stover Daniel G. , Barrera Victor , Hutchinson John N. , Freedman Rachel A. , Mittendorf Elizabeth A. , McAllister Sandra S.
Published: April 2023

Supplementary File 1 lists the most differentially expressed genes from the RNAseq analysis
Figure S5 from Interferon Signaling Is Diminished with Age and Is Associated with Immune Checkpoint Blockade Efficacy in Triple-Negative Breast Cancer
Authors: Sceneay Jaclyn , Goreczny Gregory J. , Wilson Kristin , Morrow Sara , DeCristo Molly J. , Ubellacker Jessalyn M. , Qin Yuanbo , Laszewski Tyler , Stover Daniel G. , Barrera Victor , Hutchinson John N. , Freedman Rachel A. , Mittendorf Elizabeth A. , McAllister Sandra S.
Published: April 2023

Supplementary Figure 5 shows a heatmap of the most differentially expressed genes in TNBC under 40 and over 65 using the METABRIC dataset for figure 5
Figure S4 from Interferon Signaling Is Diminished with Age and Is Associated with Immune Checkpoint Blockade Efficacy in Triple-Negative Breast Cancer
Authors: Sceneay Jaclyn , Goreczny Gregory J. , Wilson Kristin , Morrow Sara , DeCristo Molly J. , Ubellacker Jessalyn M. , Qin Yuanbo , Laszewski Tyler , Stover Daniel G. , Barrera Victor , Hutchinson John N. , Freedman Rachel A. , Mittendorf Elizabeth A. , McAllister Sandra S.
Published: April 2023

Supplementary Figure 4 shows hierarchical clustering of the most differentially expressed genes and GSEA graphs showing enriched pathways associated with age and treatment for figure 4
Figure S2 from Interferon Signaling Is Diminished with Age and Is Associated with Immune Checkpoint Blockade Efficacy in Triple-Negative Breast Cancer
Authors: Sceneay Jaclyn , Goreczny Gregory J. , Wilson Kristin , Morrow Sara , DeCristo Molly J. , Ubellacker Jessalyn M. , Qin Yuanbo , Laszewski Tyler , Stover Daniel G. , Barrera Victor , Hutchinson John N. , Freedman Rachel A. , Mittendorf Elizabeth A. , McAllister Sandra S.
Published: April 2023

Supplementary Figure 2 shows PD-L1 and MHCI upregulation after IFNg stimulation in the 4T1 and Met1 cells lines, experimental schematic, tumor volume at the start of treatment, and graphs of individual tumor growth for figure 2
Figure S1 from Interferon Signaling Is Diminished with Age and Is Associated with Immune Checkpoint Blockade Efficacy in Triple-Negative Breast Cancer
Authors: Sceneay Jaclyn , Goreczny Gregory J. , Wilson Kristin , Morrow Sara , DeCristo Molly J. , Ubellacker Jessalyn M. , Qin Yuanbo , Laszewski Tyler , Stover Daniel G. , Barrera Victor , Hutchinson John N. , Freedman Rachel A. , Mittendorf Elizabeth A. , McAllister Sandra S.
Published: April 2023

Supplementary Figure 1 shows individual tumor growth from figure 1, composition of peripheral blood using 4T07 and 67NR cell lines, and IHC characterization of 4T1 and Met1 tumors
Supplementary Figure 3 from The TP53 Apoptotic Network Is a Primary Mediator of Resistance to BCL2 Inhibition in AML Cells
Authors: Nechiporuk Tamilla , Kurtz Stephen E. , Nikolova Olga , Liu Tingting , Jones Courtney L. , D'Alessandro Angelo , Culp-Hill Rachel , d'Almeida Amanda , Joshi Sunil K. , Rosenberg Mara , Tognon Cristina E. , Danilov Alexey V. , Druker Brian J. , Chang Bill H. , McWeeney Shannon K , Tyner Jeffrey W.
Published: April 2023

Global metabolomics profile of AML patient samples with WT or mutant TP53 status.
Table S5 from Aggressive PDACs Show Hypomethylation of Repetitive Elements and the Execution of an Intrinsic IFN Program Linked to a Ductal Cell of Origin
Authors: Espinet Elisa , Gu Zuguang , Imbusch Charles D. , Giese Nathalia A. , Büscher Magdalena , Safavi Mariam , Weisenburger Silke , Klein Corinna , Vogel Vanessa , Falcone Mattia , Insua-Rodríguez Jacob , Reitberger Manuel , Thiel Vera , Kossi Steffi O. , Muckenhuber Alexander , Sarai Karnjit , Lee Alex Y.L. , Backx Elyne , Zarei Soheila , Gaida Matthias M. , Rodríguez-Paredes Manuel , Donato Elisa , Yen Hsi-Yu , Eils Roland , Schlesner Matthias , Pfarr Nicole , Hackert Thilo , Plass Christoph , Brors Benedikt , Steiger Katja , Weichenhan Dieter , Arda H. Efsun , Rooman Ilse , Kopp Janel L. , Strobel Oliver , Weichert Wilko , Sprick Martin R. , Trumpp Andreas
Published: April 2023

PDACvsNP enrichment results
Table S3 from Loss of EZH2 Reprograms BCAA Metabolism to Drive Leukemic Transformation
Authors: Gu Zhimin , Liu Yuxuan , Cai Feng , Patrick McKenzie , Zmajkovic Jakub , Cao Hui , Zhang Yuannyu , Tasdogan Alpaslan , Chen Mingyi , Qi Le , Liu Xin , Li Kailong , Lyu Junhua , Dickerson Kathryn E. , Chen Weina , Ni Min , Merritt Matthew E. , Morrison Sean J. , Skoda Radek C. , DeBerardinis Ralph J. , Xu Jian
Published: April 2023

Table S3 shows sequences of primers and shRNAs
Table S2 from A Gain-of-Function p53-Mutant Oncogene Promotes Cell Fate Plasticity and Myeloid Leukemia through the Pluripotency Factor FOXH1
Authors: Loizou Evangelia , Banito Ana , Livshits Geulah , Ho Yu-Jui , Koche Richard P. , Sánchez-Rivera Francisco J. , Mayle Allison , Chen Chi-Chao , Kinalis Savvas , Bagger Frederik O. , Kastenhuber Edward R. , Durham Benjamin H. , Lowe Scott W.
Published: April 2023

Sequence of oligos and plasmids used as well as FACS antibody details
Table S1 from A Gain-of-Function p53-Mutant Oncogene Promotes Cell Fate Plasticity and Myeloid Leukemia through the Pluripotency Factor FOXH1
Authors: Loizou Evangelia , Banito Ana , Livshits Geulah , Ho Yu-Jui , Koche Richard P. , Sánchez-Rivera Francisco J. , Mayle Allison , Chen Chi-Chao , Kinalis Savvas , Bagger Frederik O. , Kastenhuber Edward R. , Durham Benjamin H. , Lowe Scott W.
Published: April 2023

Supplementary Table 1
Supplementary Figures S1-S8 from A Gain-of-Function p53-Mutant Oncogene Promotes Cell Fate Plasticity and Myeloid Leukemia through the Pluripotency Factor FOXH1
Authors: Loizou Evangelia , Banito Ana , Livshits Geulah , Ho Yu-Jui , Koche Richard P. , Sánchez-Rivera Francisco J. , Mayle Allison , Chen Chi-Chao , Kinalis Savvas , Bagger Frederik O. , Kastenhuber Edward R. , Durham Benjamin H. , Lowe Scott W.
Published: April 2023

Supplementary Figures S1-S8, with legends
Supplementary Table S3 from Rational Targeting of Cooperating Layers of the Epigenome Yields Enhanced Therapeutic Efficacy against AML
Authors: Duy Cihangir , Teater Matt , Garrett-Bakelman Francine E. , Lee Tak C. , Meydan Cem , Glass Jacob L. , Li Meng , Hellmuth Johannes C. , Mohammad Helai P. , Smitheman Kimberly N. , Shih Alan H. , Abdel-Wahab Omar , Tallman Martin S. , Guzman Monica L. , Muench David , Grimes H. Leighton , Roboz Gail J. , Kruger Ryan G. , Creasy Caretha L. , Paietta Elisabeth M. , Levine Ross L. , Carroll Martin , Melnick Ari M.
Published: April 2023

Drug response of sequenced patient-derived cases
Figure S8 from Oncogenic KRAS Induces NIX-Mediated Mitophagy to Promote Pancreatic Cancer
Authors: Humpton Timothy J. , Alagesan Brinda , DeNicola Gina M. , Lu Dan , Yordanov Georgi N. , Leonhardt Carl S. , Yao Melissa A. , Alagesan Priya , Zaatari Maya N. , Park Youngkyu , Skepper Jeremy N. , Macleod Kay F. , Perez-Mancera Pedro A. , Murphy Michael P. , Evan Gerard I. , Vousden Karen H. , Tuveson David A.
Published: April 2023

Supp figure 8
Figure S5 from Oncogenic KRAS Induces NIX-Mediated Mitophagy to Promote Pancreatic Cancer
Authors: Humpton Timothy J. , Alagesan Brinda , DeNicola Gina M. , Lu Dan , Yordanov Georgi N. , Leonhardt Carl S. , Yao Melissa A. , Alagesan Priya , Zaatari Maya N. , Park Youngkyu , Skepper Jeremy N. , Macleod Kay F. , Perez-Mancera Pedro A. , Murphy Michael P. , Evan Gerard I. , Vousden Karen H. , Tuveson David A.
Published: April 2023

Supp figure 5
Supplementary Table 5 from Inactivation of Fbxw7 Impairs dsRNA Sensing and Confers Resistance to PD-1 Blockade
Authors: Gstalder Cécile , Liu David , Miao Diana , Lutterbach Bart , DeVine Alexander L. , Lin Chenyu , Shettigar Megha , Pancholi Priya , Buchbinder Elizabeth I. , Carter Scott L. , Manos Michael P. , Rojas-Rudilla Vanesa , Brennick Ryan , Gjini Evisa , Chen Pei-Hsuan , Lako Ana , Rodig Scott , Yoon Charles H. , Freeman Gordon J. , Barbie David A. , Hodi F. Stephen , Miles Wayne , Van Allen Eliezer M. , Haq Rizwan
Published: April 2023

Spearman correlation of FBXW7 mRNA levels with CD8A mRNA levels across TCGA cancers
Supplementary Table 4 from Inactivation of Fbxw7 Impairs dsRNA Sensing and Confers Resistance to PD-1 Blockade
Authors: Gstalder Cécile , Liu David , Miao Diana , Lutterbach Bart , DeVine Alexander L. , Lin Chenyu , Shettigar Megha , Pancholi Priya , Buchbinder Elizabeth I. , Carter Scott L. , Manos Michael P. , Rojas-Rudilla Vanesa , Brennick Ryan , Gjini Evisa , Chen Pei-Hsuan , Lako Ana , Rodig Scott , Yoon Charles H. , Freeman Gordon J. , Barbie David A. , Hodi F. Stephen , Miles Wayne , Van Allen Eliezer M. , Haq Rizwan
Published: April 2023

Gene set enrichment analysis of FBXW7 wild-type or mutated melanoma samples from TCGA
Supplementary Data from Leukemia Cell of Origin Influences Apoptotic Priming and Sensitivity to LSD1 Inhibition
Authors: Cai Sheng F. , Chu S. Haihua , Goldberg Aaron D. , Parvin Salma , Koche Richard P. , Glass Jacob L. , Stein Eytan M. , Tallman Martin S. , Sen Filiz , Famulare Christopher A. , Cusan Monica , Huang Chun-Hao , Chen Chun-Wei , Zou Lihua , Cordner Keith B. , DelGaudio Nicole L. , Durani Vidushi , Kini Mitali , Rex Madison , Tian Helen S. , Zuber Johannes , Baslan Timour , Lowe Scott W. , Rienhoff Hugh Y. , Letai Anthony , Levine Ross L. , Armstrong Scott A.
Published: April 2023

Supplemental Figures
Supplementary Data from Oral Mucosal Organoids as a Potential Platform for Personalized Cancer Therapy
Authors: Driehuis Else , Kolders Sigrid , Spelier Sacha , Lõhmussaar Kadi , Willems Stefan M. , Devriese Lot A. , de Bree Remco , de Ruiter Emma J. , Korving Jeroen , Begthel Harry , van Es Johan H. , Geurts Veerle , He Gui-Wei , van Jaarsveld Richard H. , Oka Rurika , Muraro Mauro J. , Vivié Judith , Zandvliet Maurice M.J.M. , Hendrickx Antoni P.A. , Iakobachvili Nino , Sridevi Priya , Kranenburg Onno , van Boxtel Ruben , Kops Geert J.P.L. , Tuveson David A. , Peters Peter J. , van Oudenaarden Alexander , Clevers Hans
Published: April 2023

Table S2 and S4
Movie S3 from Oral Mucosal Organoids as a Potential Platform for Personalized Cancer Therapy
Authors: Driehuis Else , Kolders Sigrid , Spelier Sacha , Lõhmussaar Kadi , Willems Stefan M. , Devriese Lot A. , de Bree Remco , de Ruiter Emma J. , Korving Jeroen , Begthel Harry , van Es Johan H. , Geurts Veerle , He Gui-Wei , van Jaarsveld Richard H. , Oka Rurika , Muraro Mauro J. , Vivié Judith , Zandvliet Maurice M.J.M. , Hendrickx Antoni P.A. , Iakobachvili Nino , Sridevi Priya , Kranenburg Onno , van Boxtel Ruben , Kops Geert J.P.L. , Tuveson David A. , Peters Peter J. , van Oudenaarden Alexander , Clevers Hans
Published: April 2023

Movie S3
Table S7 from Machine-Learning and Chemicogenomics Approach Defines and Predicts Cross-Talk of Hippo and MAPK Pathways
Authors: Pham Trang H. , Hagenbeek Thijs J. , Lee Ho-June , Li Jason , Rose Christopher M. , Lin Eva , Yu Mamie , Martin Scott E. , Piskol Robert , Lacap Jennifer A. , Sampath Deepak , Pham Victoria C. , Modrusan Zora , Lill Jennie R. , Klijn Christiaan , Malek Shiva , Chang Matthew T. , Dey Anwesha
Published: April 2023

Relative abundance of total peptides
Table S6 from Machine-Learning and Chemicogenomics Approach Defines and Predicts Cross-Talk of Hippo and MAPK Pathways
Authors: Pham Trang H. , Hagenbeek Thijs J. , Lee Ho-June , Li Jason , Rose Christopher M. , Lin Eva , Yu Mamie , Martin Scott E. , Piskol Robert , Lacap Jennifer A. , Sampath Deepak , Pham Victoria C. , Modrusan Zora , Lill Jennie R. , Klijn Christiaan , Malek Shiva , Chang Matthew T. , Dey Anwesha
Published: April 2023

Relative abundance of Phosphopeptide counts
Movie S1 from Oral Mucosal Organoids as a Potential Platform for Personalized Cancer Therapy
Authors: Driehuis Else , Kolders Sigrid , Spelier Sacha , Lõhmussaar Kadi , Willems Stefan M. , Devriese Lot A. , de Bree Remco , de Ruiter Emma J. , Korving Jeroen , Begthel Harry , van Es Johan H. , Geurts Veerle , He Gui-Wei , van Jaarsveld Richard H. , Oka Rurika , Muraro Mauro J. , Vivié Judith , Zandvliet Maurice M.J.M. , Hendrickx Antoni P.A. , Iakobachvili Nino , Sridevi Priya , Kranenburg Onno , van Boxtel Ruben , Kops Geert J.P.L. , Tuveson David A. , Peters Peter J. , van Oudenaarden Alexander , Clevers Hans
Published: April 2023

Movie S1
Table S4 from Machine-Learning and Chemicogenomics Approach Defines and Predicts Cross-Talk of Hippo and MAPK Pathways
Authors: Pham Trang H. , Hagenbeek Thijs J. , Lee Ho-June , Li Jason , Rose Christopher M. , Lin Eva , Yu Mamie , Martin Scott E. , Piskol Robert , Lacap Jennifer A. , Sampath Deepak , Pham Victoria C. , Modrusan Zora , Lill Jennie R. , Klijn Christiaan , Malek Shiva , Chang Matthew T. , Dey Anwesha
Published: April 2023

Gene signature correlations with clusters 1-4
Table S2 from The Lipogenic Regulator SREBP2 Induces Transferrin in Circulating Melanoma Cells and Suppresses Ferroptosis
Authors: Hong Xin , Roh Whijae , Sullivan Ryan J. , Wong Keith H.K. , Wittner Ben S. , Guo Hongshan , Dubash Taronish D. , Sade-Feldman Moshe , Wesley Benjamin , Horwitz Elad , Boland Genevieve M. , Marvin Dieuwke L. , Bonesteel Todd , Lu Chenyue , Aguet François , Burr Risa , Freeman Samuel S. , Parida Laxmi , Calhoun Katherine , Jewett Michelle K. , Nieman Linda T. , Hacohen Nir , Näär Anders M. , Ting David T. , Toner Mehmet , Stott Shannon L. , Getz Gad , Maheswaran Shyamala , Haber Daniel A.
Published: April 2023

Table S2
Table S1 from Epigenomics and Single-Cell Sequencing Define a Developmental Hierarchy in Langerhans Cell Histiocytosis
Authors: Halbritter Florian , Farlik Matthias , Schwentner Raphaela , Jug Gunhild , Fortelny Nikolaus , Schnöller Thomas , Pisa Hanja , Schuster Linda C. , Reinprecht Andrea , Czech Thomas , Gojo Johannes , Holter Wolfgang , Minkov Milen , Bauer Wolfgang M. , Simonitsch-Klupp Ingrid , Bock Christoph , Hutter Caroline
Published: April 2023

Data overview. List of sequenced libraries for single-cell RNA-seq and bulk ATAC-seq with summary statistics.
Supplementary Figures from A Critical Role for Fas-Mediated Off-Target Tumor Killing in T-cell Immunotherapy
Authors: Upadhyay Ranjan , Boiarsky Jonathan A. , Pantsulaia Gvantsa , Svensson-Arvelund Judit , Lin Matthew J. , Wroblewska Aleksandra , Bhalla Sherry , Scholler Nathalie , Bot Adrian , Rossi John M. , Sadek Norah , Parekh Samir , Lagana Alessandro , Baccarini Alessia , Merad Miriam , Brown Brian D. , Brody Joshua D.
Published: April 2023

Supplementary Figures S1-S5