bluuebunny/crossref_metadata_2025 huggingface dataset:
Mechanical control of tissue shape and morphogenetic flows during vertebrate body axis elongation
Authors: Banavar Samhita P. , Carn Emmet K. , Rowghanian Payam , Stooke-Vaughan Georgina , Kim Sangwoo , Campàs Otger
Published: April 2021

Shaping embryonic tissues into their functional morphologies requires cells to control the physical state of the tissue in space and time. While regional variations in cellular forces or cell proliferation have been typically assumed to be the main physical factors controlling tissue morphogenesis, recent experiments have revealed that spatial variations in the tissue physical (fluid/solid) state play a key role in shaping embryonic tissues. Here we theoretically study how the regional control of fluid and solid tissue states guides morphogenetic flows to shape the extending vertebrate body axis. Our results show that both the existence of a fluid-to-solid tissue transition along the anteroposterior axis and the tissue surface tension determine the shape of the tissue and its ability to elongate unidirectionally, with large tissue tensions preventing unidirectional elongation and promoting blob-like tissue expansions. We predict both the tissue morphogenetic flows and stresses that enable unidirectional axis elongation. Our results show the existence of a sharp transition in the structure of morphogenetic flows, from a flow with no vortices to a flow with two counter-rotating vortices, caused by a transition in the number and location of topological defects in the flow field. Finally, comparing the theoretical predictions to quantitative measurements of both tissue flows and shape during zebrafish body axis elongation, we show that the observed morphogenetic events can be explained by the existence of a fluid-to-solid tissue transition along the anteroposterior axis. These results highlight the role of spatiotemporally-controlled fluid-to-solid transitions in the tissue state as a physical mechanism of embryonic morphogenesis.
Decay radius of climate decision for solar panels in the city of Fresno, USA
Authors: Barton-Henry Kelsey , Wenz Leonie , Levermann Anders
Published: April 2021

To design incentives towards achieving climate mitigation targets, it is important to understand the mechanisms that affect individual climate decisions such as solar panel installation. It has been shown that peer effects are important in determining the uptake and spread of household photovoltaic installations. Due to coarse geographical data, it remains unclear whether this effect is generated through geographical proximity or within groups exhibiting similar characteristics. Here we show that geographical proximity is the most important predictor of solar panel implementation, and that peer effects diminish with distance. Using satellite imagery, we build a unique geo-located dataset for the city of Fresno to specify the importance of small distances. Employing machine learning techniques, we find the density of solar panels within the shortest measured radius of an address is the most important factor in determining the likelihood of that address having a solar panel. The importance of geographical proximity decreases with distance following an exponential curve with a decay radius of 210 meters. The dependence is slightly more pronounced in low-income groups. These findings support the model of distance-related social diffusion, and suggest priority should be given to seeding panels in areas where few exist.
Spatio-temporal characterization of fracture healing patterns and assessment of biomaterials by time-lapsed in vivo micro-computed tomography
Authors: Wehrle Esther , Tourolle né Betts Duncan C. , Kuhn Gisela A. , Floreani Erica , Nambiar Malavika H. , Schroeder Bryant J. , Hofmann Sandra , Müller Ralph
Published: April 2021

Thorough preclinical evaluation of functionalized biomaterials for treatment of large bone defects is essential prior to clinical application. Using in vivo micro-computed tomography (micro-CT) and mouse femoral defect models with different defect sizes, we were able to detect spatio-temporal healing patterns indicative of physiological and impaired healing in three defect sub-volumes and the adjacent cortex. The time-lapsed in vivo micro-CT-based approach was then applied to evaluate the bone regeneration potential of functionalized biomaterials using collagen and bone morphogenetic protein (BMP-2). Both collagen and BMP-2 treatment led to distinct changes in bone turnover in the different healing phases. Despite increased periosteal bone formation, 87.5% of the defects treated with collagen scaffolds resulted in non-unions. Additional BMP-2 application significantly accelerated the healing process and increased the union rate to 100%. This study further shows potential of time-lapsed in vivo micro-CT for capturing spatio-temporal deviations preceding non-union formation and how this can be prevented by application of functionalized biomaterials. This study therefore supports the application of longitudinal in vivo micro-CT for discrimination of normal and disturbed healing patterns and for the spatio-temporal characterization of the bone regeneration capacity of functionalized biomaterials.
A cyclic learning approach for improving pre-stack seismic processing
Authors: Borges Oliveira Dario Augusto , Szwarcman Daniela , da Silva Ferreira Rodrigo , Zaytsev Semen , Semin Daniil
Published: April 2021

Current seismic processing workflows in the oil and gas industry involve several interactions between different experts to optimize the overall data quality in various tasks, such as noise attenuation, velocity analysis and horizon picking. While many machine learning-based approaches have been proposed to support each of those steps, most of them disregard expert interactions to guide the overall optimization. This paper presents geocycles, a cyclic learning approach that mimics this iterative process, which can be applied to different pre-stack seismic processing tasks. Our method refactor these processes considering training, testing, and evaluation sub-tasks, which allow the selection of samples for greedy sequential processes targeting an overall optimum quality for very large seismic datasets. We present encouraging results showing that a cyclic structure and efficient quality metrics improved overall outcomes in up to 128% for two different seismic processing tasks in comparison to a 1-cycle machine learning approach.
A social network analysis of the spread of COVID-19 in South Korea and policy implications
Authors: Jo Wonkwang , Chang Dukjin , You Myoungsoon , Ghim Ghi-Hoon
Published: April 2021

This study estimates the COVID-19 infection network from actual data and draws on implications for policy and research. Using contact tracing information of 3283 confirmed patients in Seoul metropolitan areas from January 20, 2020 to July 19, 2020, this study created an infection network and analyzed its structural characteristics. The main results are as follows: (i) out-degrees follow an extremely positively skewed distribution; (ii) removing the top nodes on the out-degree significantly decreases the size of the infection network, and (iii) the indicators that express the infectious power of the network change according to governmental measures. Efforts to collect network data and analyze network structures are urgently required for the efficiency of governmental responses to COVID-19. Implications for better use of a metric such as R0 to estimate infection spread are also discussed.
Bodily ownership and agency sensations in a natural state
Authors: Hidaka Souta , Sasaki Kyoshiro , Kawagoe Toshikazu , Asai Nobuko , Teramoto Wataru
Published: April 2021

Our bodily sensation is a fundamental cue for our self-consciousness. Whereas experimental studies have uncovered characteristics of bodily sensation, these studies investigated bodily sensations through manipulating bodily sensations to be apart from one’s own body and to be assigned to external, body-like objects. In order to capture our bodily sensation as it is, this questionnaire survey study explored the characteristics of bodily sensation using a large population-based sample (N = 580, comprising 20s to 70s age groups) without experimental manipulations. We focused on the sensations of ownership, the feeling of having a body part as one’s own, and agency, the feeling of controlling a body part by oneself, in multiple body parts (the eyes, ears, hands, legs, nose, and mouth). The ownership and agency sensations were positively related to each other in each body part. Interestingly, the agency sensation of the hands and legs had a positive relationship with the ownership sensations of the other body parts. We also found the 60s age group had a unique internal configuration, assessed by the similarity of rating scores, of the body parts for each bodily sensation. Our findings revealed the existence of unique characteristics for bodily sensations in a natural state.
Deciphering molecular details of the RAC–ribosome interaction by EPR spectroscopy
Authors: Fries Sandra J. , Braun Theresa S. , Globisch Christoph , Peter Christine , Drescher Malte , Deuerling Elke
Published: April 2021

The eukaryotic ribosome-associated complex (RAC) plays a significant role in de novo protein folding. Its unique interaction with the ribosome, comprising contacts to both ribosomal subunits, suggests a RAC-mediated coordination between translation elongation and co-translational protein folding. Here, we apply electron paramagnetic resonance (EPR) spectroscopy combined with site-directed spin labeling (SDSL) to gain deeper insights into a RAC–ribosome contact affecting translational accuracy. We identified a local contact point of RAC to the ribosome. The data provide the first experimental evidence for the existence of a four-helix bundle as well as a long α-helix in full-length RAC, in solution as well as on the ribosome. Additionally, we complemented the structural picture of the region mediating this functionally important contact on the 40S ribosomal subunit. In sum, this study constitutes the first application of SDSL-EPR spectroscopy to elucidate the molecular details of the interaction between the 3.3 MDa translation machinery and a chaperone complex.
Substituting chemical P fertilizer with organic manure: effects on double-rice yield, phosphorus use efficiency and balance in subtropical China
Authors: Lu Yanhong , Gao Yajie , Nie Jun , Liao Yulin , Zhu Qidong
Published: April 2021

Organic manure is an ideal alternative fertilizer to provide phosphorus (P) but is not fully recycled in subtropical China. In order to identify if it can replace chemical P fertilizer, a 35-year field trail in a paddy soil under double-rice cropping system was conducted to assess the effects of substituting chemical P fertilizer with pig manure (NKM) on rice yield, phosphorus use efficiency (PUE) and P balance. The N, P and K input under NKM was 1.2, 0.8 and 1.2 times of the combined chemical fertilizer treatment (NPK), respectively. The NKM treatment reached the same level of grain yield with NPK after 20 years’ application, and showed significantly 4.0% decreased double-rice grain yield compared with NPK over the 35 years. The NKM treatment reduced the crop P uptake leading to decreased PUE compared with NPK. Long-term P budget showed that NKM may result in higher potential of P loss than NPK. Thus, substituting chemical P fertilizer with organic manure under this rate of nutrient input slightly sacrificed the crop yield and may increase the P loss. Considering the benefits of soil fertility, adjusting the substitution rate with a more balanced NPK input might be alternative in subtropical China.
Hepatitis B virus infection among pregnant mothers and children after the introduction of the universal vaccination program in Central Vietnam
Authors: Miyakawa Masami , Yoshida Lay-Myint , Nguyen Hien-Anh Thi , Takahashi Kensuke , Le Tho Huu , Yasunami Michio , Ariyoshi Koya , Dang Duc-Anh , Moriuchi Hiroyuki
Published: April 2021

A birth cohort study was conducted in Khan Hoa Province, central Vietnam between 2009 and 2012 to determine the seroprevalence of hepatitis B virus (HBV) in pregnant women and their children, and associated risk factors. We enrolled 1987 pregnant women with their babies at the birth phase, and 12.6% (95% confidence interval [CI]: 11.1–14.0) of mothers were hepatitis B surface antigen (HBsAg)+. At 2-year follow-up phase, 1339 (67.4%) children were enrolled of whom 76.6% completed hepatitis B vaccines (HepB) and 1.9% (95% CI: 1.2–2.7) were HBsAg+. When mothers were hepatitis B e antigen (HBeAg)+, 28.3% of children have got infected even with complete HepB. HBV infection in mothers, hepatitis B surface antibody (anti-HBs antibody) below the seroprotective level in children, and mothers with pre-pregnancy low body mass index were associated with HBV infection in children. Meanwhile, HBV infection in children, older maternal age, no or incomplete doses of HepB, and boys were associated with anti-HBs antibody below the seroprotective level in children. Our birth cohort study determined a low rate of congenital HBV infection and associated risk factors in Vietnam, however further studies are needed to advance prevention including anti-viral therapy in pregnant women at high risk.
Flow and wake characteristics associated with large wood to inform river restoration
Authors: Schalko Isabella , Wohl Ellen , Nepf Heidi M.
Published: April 2021

Wood is an integral part of a river ecosystem and the number of restoration projects using log placements is increasing. Physical model tests were used to explore how the wood position and submergence level (discharge) affect wake structure, and hence the resulting habitat. We observed a von-Kármán vortex street (VS) for emergent logs placed at the channel center, while no VS formed for submerged logs, because the flow entering the wake from above the log (sweeping flow) inhibited VS formation. As a result, emergent logs placed at the channel center resulted in ten times higher turbulent kinetic energy compared to submerged logs. In addition, both spatial variation in time-mean velocity and turbulence level increased with increasing log length and decreasing submergence level. Submerged logs and logs placed at the channel side created a greater velocity deficit and a longer recirculation zone, both of which can increase the residence time in the wake and deposition of organic matter and nutrients. The results demonstrate that variation in log size and degree of submergence can be used as a tool to vary habitat suitability for different fish preferences. To maximize habitat diversity in rivers, we suggest a diverse large wood placement.
Homeostasis of the ER redox state subsequent to proteasome inhibition
Authors: Oku Yuki , Kariya Masahiro , Fujimura Takaaki , Hoseki Jun , Sakai Yasuyoshi
Published: April 2021

Endoplasmic reticulum (ER) maintains within, an oxidative redox state suitable for disulfide bond formation. We monitored the ER redox dynamics subsequent to proteasome inhibition using an ER redox probe ERroGFP S4. Proteasomal inhibition initially led to oxidation of the ER, but gradually the normal redox state was recovered that further led to a reductive state. These events were found to be concomitant with the increase in the both oxidized and reduced glutathione in the microsomal fraction, with a decrease of total intracellular glutathione. The ER reduction was suppressed by pretreatment of a glutathione synthesis inhibitor or by knockdown of ATF4, which induces glutathione-related genes. These results suggested cellular adaptation of ER redox homeostasis: (1) inhibition of proteasome led to accumulation of misfolded proteins and oxidative state in the ER, and (2) the oxidative ER was then reduced by ATF4 activation, followed by influx of glutathione into the ER.
Impact of different numbers of microsatellite markers on population genetic results using SLAF-seq data for Rhododendron species
Authors: Wang Huaying , Yang Baiming , Wang Huan , Xiao Hongxing
Published: April 2021

Microsatellites (simple sequence repeats, SSRs) are co-dominant nuclear markers that are widely used in population genetic studies. Population genetic parameters from different studies might be significantly influenced by differences in marker number. In our study, 265 sequences with polymorphic microsatellites were obtained from SLAF-seq data. Then, subpopulations containing different numbers (5, 6, 7,…, 15, 20, 25, 30, 35, 40) of markers were genotyped 10 times to investigate the impact of marker numbers on population genetic diversity results. Our results show that genotyping with less than 11 or 12 microsatellite markers lead to significant deviations in the population genetic diversity or genetic structure results. In order to provide markers for population genetic and conservation studies for Rhododendron, 26 SSR primers were designed and validated in three species.
Netrin-1 functions as a suppressor of bone morphogenetic protein (BMP) signaling
Authors: Abdullah Ahmad , Herdenberg Carl , Hedman Håkan
Published: April 2021

Netrin-1 is a secreted protein that is well known for its involvement in axonal guidance during embryonic development and as an enhancer of cancer cell metastasis. Despite extensive efforts, the molecular mechanisms behind many of the physiological functions of netrin-1 have remained elusive. Here, we show that netrin-1 functions as a suppressor of bone morphogenetic protein (BMP) signaling in various cellular systems, including a mutually inhibitory interaction with the BMP-promoting function of leucine-rich repeats and immunoglobulin-like domains (LRIG) proteins. The BMP inhibitory function of netrin-1 in mouse embryonic fibroblasts was dependent on the netrin receptor neogenin, with the expression level regulated by both netrin-1 and LRIG proteins. Our results reveal a previously unrecognized function of netrin-1 that may help to explain several of the developmental, physiological, and cancer-promoting functions of netrins at the signal transduction level.
One-pot green synthesis of iron oxide nanoparticles from Bauhinia tomentosa: Characterization and application towards synthesis of 1, 3 diolein
Authors: Lakshminarayanan Sushmitha , Shereen M. Furhana , Niraimathi K. L. , Brindha P. , Arumugam A.
Published: April 2021

The green synthesis of NPs through plant extracts can be a modest, one-pot alternative synthesis to the conventional physical or chemical method. The prime focus of this study is to produce MNPs by the reducing effect of Bauhinia tomentosa leaf extract, and it was immobilized in porcine pancreatic lipase (PPL). Synthesized NPs were characterized by field emission scanning electron microscopy (FESEM), X-ray diffraction (XRD) and Raman spectroscopy, UV–Vis Spectrometry, Thermogravimetry, and Differential Scanning Calorimeter (DSC), Zeta potential test, VSM, BET and Fourier Transform Infrared Spectroscopy (FTIR). The effect of process parameters was studied, about the efficiency of immobilization are enzyme stability, the extent of enzyme reusability, its separation from products, the activity of immobilized enzyme, recovery, and its loss. Finally, the immobilized lipase was used for the synthesis of 1,3-diolein using enzyme-mediated esterification of oleic acid and glycerol. Under optimized condition (reaction temp-55 $$^\circ $$

∘

C; molar ratio-2.5:1; pH-7) diolein yield was achieved to be 94%. Therefore, this work was further used for the industrial production of 1,3-diacylglycerol since a perfect enzyme-catalyzed process was observed.
The actin binding protein drebrin helps to protect against the development of seizure-like events in the entorhinal cortex
Authors: Klemz Alexander , Kreis Patricia , Eickholt Britta J. , Gerevich Zoltan
Published: April 2021

The actin binding protein drebrin plays a key role in dendritic spine formation and synaptic plasticity. Decreased drebrin protein levels have been observed in temporal lobe epilepsy, suggesting the involvement of drebrin in the disease. Here we investigated the effect of drebrin knockout on physiological and pathophysiological neuronal network activities in mice by inducing gamma oscillations, involved in higher cognitive functions, and by analyzing pathophysiological epileptiform activity. We found that loss of drebrin increased the emergence of spontaneous gamma oscillations suggesting an increase in neuronal excitability when drebrin is absent. Further analysis showed that although the kainate-induced hippocampal gamma oscillations were unchanged in drebrin deficient mice, seizure like events measured in the entorhinal cortex appeared earlier and more frequently. The results suggest that while drebrin is not essential for normal physiological network activity, it helps to protect against the formation of seizure like activities during pathological conditions. The data indicate that targeting drebrin function could potentially be a preventive or therapeutic strategy for epilepsy treatment.
Prediction of sarcopenia using a battery of circulating biomarkers
Authors: Qaisar Rizwan , Karim Asima , Muhammad Tahir , Shah Islam , Khan Javaidullah
Published: April 2021

Loss of muscle mass and strength with aging, termed sarcopenia is accelerated in several comorbidities including chronic heart failure (CHF) and chronic obstructive pulmonary diseases (COPD). However, the effective circulating biomarkers to accurately diagnose and assess sarcopenia are not known. We recruited male healthy controls and patients with CHF and COPD (n = 81–87/group), aged 55–74 years. Sarcopenia was clinically identified based on hand-grip strength, appendicular skeletal muscle index and physical capacity as recommended by the European working group for sarcopenia. The serum levels of amino-terminal pro-peptide of type-III procollagen, c-terminal agrin fragment-22, osteonectin, irisin, fatty acid-binding protein-3 and macrophage migration inhibitory factor were significantly different between healthy controls and patients with CHF and COPD. Risk scores for individual biomarkers were calculated by logistic regressions and combined into a cumulative risk score. The median cutoff value of 3.86 was used to divide subjects into high- and low-risk groups for sarcopenia with the area under the curve of 0.793 (95% CI = 0.738–0.845, p < 0.001). A significantly higher incidence of clinical sarcopenia was found in high-risk group. Taken together, the battery of biomarkers can be an effective tool in the early diagnosis and assessment of sarcopenia.
Genome-wide identification, evolutionary relationship and expression analysis of AGO, DCL and RDR family genes in tea
Authors: Krishnatreya Debasish B. , Baruah Pooja Moni , Dowarah Bhaskar , Chowrasia Soni , Mondal Tapan Kumar , Agarwala Niraj
Published: April 2021

Three gene families in plants viz. Argonaute (AGOs), Dicer-like (DCLs) and RNA dependent RNA polymerase (RDRs) constitute the core components of small RNA mediated gene silencing machinery. The present study endeavours to identify members of these gene families in tea and to investigate their expression patterns in different tissues and various stress regimes. Using genome-wide analysis, we have identified 18 AGOs, 5 DCLs and 9 RDRs in tea, and analyzed their phylogenetic relationship with orthologs of Arabidopsis thaliana. Gene expression analysis revealed constitutive expression of CsAGO1 in all the studied tissues and stress conditions, whereas CsAGO10c showed most variable expression among all the genes. CsAGO10c gene was found to be upregulated in tissues undergoing high meristematic activity such as buds and roots, as well as in Exobasidium vexans infected samples. CsRDR2 and two paralogs of CsAGO4, which are known to participate in biogenesis of hc-siRNAs, showed similarities in their expression levels in most of the tea plant tissues. This report provides first ever insight into the important gene families involved in biogenesis of small RNAs in tea. The comprehensive knowledge of these small RNA biogenesis purveyors can be utilized for tea crop improvement aimed at stress tolerance and quality enhancement.
Transcriptome analysis of upland cotton revealed novel pathways to scavenge reactive oxygen species (ROS) responding to Na2SO4 tolerance
Authors: Wang Qinqin , Lu Xuke , Chen Xiugui , Malik Waqar Afzal , Wang Delong , Zhao Lanjie , Wang Junjuan , Wang Shuai , Guo Lixue , Cui Ruifeng , Han Mingge , Rui Cun , Zhang Yuexin , Fan Yapeng , Chen Chao , Ye Wuwei
Published: April 2021

Salinity is an extensive and adverse environmental stress to crop plants across the globe, and a major abiotic constraint responsible for limited crop production threatening the crop security. Soil salinization is a widespread problem across the globe, threatening the crop production and food security. Salinity impairs plant growth and development via reduction in osmotic potential, cytotoxicity due to excessive uptake of ions such as sodium (Na+) and chloride (Cl−), and nutritional imbalance. Cotton, being the most cultivated crop on saline-alkaline soils, it is of great importance to elucidate the mechanisms involved in Na2SO4 tolerance which is still lacking in upland cotton. Zhong 9835, a Na2SO4 resistant cultivar was screened for transcriptomic studies through various levels of Na2SO4 treatments, which results into identification of 3329 differentially expressed genes (DEGs) in roots, stems and leave at 300 mM Na2SO4 stress till 12 h in compared to control. According to gene functional annotation analysis, genes involved in reactive oxygen species (ROS) scavenging system including osmotic stress and ion toxicity were significantly up-regulated, especially GST (glutathione transferase). In addition, analysis for sulfur metabolism, results in to identification of two rate limiting enzymes [APR (Gh_D05G1637) and OASTL (Gh_A13G0863)] during synthesis of GSH from SO42−. Furthermore, we also observed a crosstalk of the hormones and TFs (transcription factors) enriched in hormone signal transduction pathway. Genes related to IAA exceeds the rest of hormones followed by ubiquitin related genes which are greater than TFs. The analysis of the expression profiles of diverse tissues under Na2SO4 stress and identification of relevant key hub genes in a network crosstalk will provide a strong foundation and valuable clues for genetic improvements of cotton in response to various salt stresses.
Systemic delivery of targeted nanotherapeutic reverses angiotensin II-induced abdominal aortic aneurysms in mice
Authors: Wang Xiaoying , Parasaram Vaideesh , Dhital Saphala , Nosoudi Nasim , Hasanain Shahd , Lane Brooks A. , Lessner Susan M. , Eberth John F. , Vyavahare Naren R.
Published: April 2021

Abdominal aortic aneurysm (AAA) disease causes dilation of the aorta, leading to aortic rupture and death if not treated early. It is the 14th leading cause of death in the U.S. and 10th leading cause of death in men over age 55, affecting thousands of patients. Despite the prevalence of AAA, no safe and efficient pharmacotherapies exist for patients. The deterioration of the elastic lamina in the aneurysmal wall is a consistent feature of AAAs, making it an ideal target for delivering drugs to the AAA site. In this research, we conjugated nanoparticles with an elastin antibody that only targets degraded elastin while sparing healthy elastin. After induction of aneurysm by 4-week infusion of angiotensin II (Ang II), two biweekly intravenous injections of pentagalloyl glucose (PGG)-loaded nanoparticles conjugated with elastin antibody delivered the drug to the aneurysm site. We show that targeted delivery of PGG could reverse the aortic dilation, ameliorate the inflammation, restore the elastic lamina, and improve the mechanical properties of the aorta at the AAA site. Therefore, simple iv therapy of PGG loaded nanoparticles can be an effective treatment option for early to middle stage aneurysms to reverse disease progression and return the aorta to normal homeostasis.
Microwave response in a topological superconducting quantum interference device
Authors: Pan Wei , Soh Daniel , Yu Wenlong , Davids Paul , Nenoff Tina M.
Published: April 2021

Photon detection at microwave frequency is of great interest due to its application in quantum computation information science and technology. Herein are results from studying microwave response in a topological superconducting quantum interference device (SQUID) realized in Dirac semimetal Cd3As2. The temperature dependence and microwave power dependence of the SQUID junction resistance are studied, from which we obtain an effective temperature at each microwave power level. It is observed the effective temperature increases with the microwave power. This observation of large microwave response may pave the way for single photon detection at the microwave frequency in topological quantum materials.
The brine depth of the Khorat Basin in Thailand as indicated by high-resolution Br profile
Authors: Shen Lijian , Siritongkham Nuchit , Wang Licheng , Liu Chenglin , Nontaso Anont , Khadsri Wanitchaya , Hu Yufei
Published: April 2021

Bromine contents of a 17-cm halite core from drilling hole of K203 in the Khorat Basin were analysed at 1 cm intervals (17 samples in total). The Br contents range from 99 to 184 ppm with a rapid variation. The K/Mg ratios of halite samples are tens of times higher than those of primary halite fluid inclusions. There is no positive correlation between Mg and Br contents, suggesting that fluid inclusions impose very little or negligible influence on Br contents of halites. The Br contents are not controlled by potash minerals either because the SEM examination shows no potash minerals and there is no relationship between K and Br contents. The Br contents of halite are thus primarily controlled by the Br concentrations of parent brines. The rapid variation of Br contents of halite within this section suggests a shallow saline pan wherein the giant Khorat evaporites were formed. This is contradictory to previous Br profiles of the Lower Salt Member which showed relatively stable and continuously increasing trends. The shallow saline pan model evidenced by high-resolution Br profile is consistent with sedimentary facies and salt mineral textures.
Ambient particulate air pollution and daily stock market returns and volatility in 47 cities worldwide
Authors: Kiihamäki Simo-Pekka , Korhonen Marko , Jaakkola Jouni J. K.
Published: April 2021

We studied globally representative data to quantify how daily fine particulate matter (PM2.5) concentrations influence both daily stock market returns and volatility. Time-series analysis was applied on 47 city-level environmental and economic datasets and meta-analysis of the city-specific estimates was used to generate a global summary effect estimate. We found that, on average, a 10 μg/m3 increase in PM2.5 reduces same day returns by 1.2% (regression coefficient: − 0.012, 95% confidence interval: − 0.021, − 0.003) Based on a meta-regression, these associations are stronger in areas where the average PM2.5 concentrations are lower, the mean returns are higher, and where the local stock market capitalization is low. Our results suggest that a 10 μg/m3 increase in PM2.5 exposure increases stock market volatility by 0.2% (regression coefficient 0.002, 95% CI 0.000, 0.004), but the city-specific estimates were heterogeneous. Meta-regression analysis did not explain much of the between-city heterogeneity. Our results provide global evidence that short-term exposure to air pollution both reduces daily stock market returns and increases volatility.
The effect of marital status on stage at diagnosis and survival in Saudis diagnosed with colorectal cancer: cancer registry analysis
Authors: Alyabsi Mesnad , Ramadan Majed , Algarni Mohammed , Alshammari Kanan , Jazieh Abdul Rahman
Published: April 2021

Colorectal cancer (CRC) is the most common cancer in males and third in females in Saudi Arabia, with the majority (66%) diagnosed at a late stage. We evaluated the effect of marital status on stage at diagnosis and CRC survival. We hypothesized that married patients would be more likely to present at an early stage and have higher survival than unmarried patients. The Ministry of National Guard-Health Affairs (MNG-HA) cancer registry was used to identify patients diagnosed with CRC from 2009 to 2017. A competing risk analysis was performed to assess the 5-year CRC-specific survival, adjusting for potential confounders. The Kaplan–Meier method and the Cox regressions were used to assess survival. Two-thirds (76.50%) of the 936 CRC patients were married, 11.64% were unmarried, and 11.86% had an unknown marital status. With multiple imputation-based analysis, the multivariate analysis indicated that unmarried patients were 52% more likely to present at an advanced stage [adjusted odds ratio (aOR) 1.52; 95% CI 1.33–1.73], and had a 30% higher risk of death due to CRC compared to the married patients (aHR 1.30; CI 1.17, 1.44). Future CRC screening and survivorship programs should assess the needs of the vulnerable unmarried population. Interventions supporting the early detection of CRC in this population may be beneficial in the long term and lead to improved cancer outcomes.
Non-alcoholic fatty liver disease is associated with bacterial translocation and a higher inflammation response in psoriatic patients
Authors: Belinchón-Romero Isabel , Bellot Pablo , Romero-Pérez David , Herraiz-Romero Isolina , Marco Francisco , Frances Rubén , Ramos-Rincón José-Manuel
Published: April 2021

Psoriasis and non-alcoholic fatty liver disease (NAFLD) are both inflammatory diseases. The study objective was to estimate the risk of NAFLD, non-alcoholic steatohepatitis, and liver fibrosis (by liver stiffness and liver biopsy) in patients with psoriasis and to determine the epidemiological, clinical, immunological (TNF-α, IL-2, IL-6, IL-12, IL-17, IL-23, and TGF-β) characteristics, and bacterial translocation. Of the 215 psoriatic patients included, 91 presented NAFLD (prevalence: 42.3%). Compared to patients with psoriasis alone, those with NAFLD were significantly more likely to have metabolic syndrome, diabetes, dyslipidemia, body mass index ≥ 30 kg/m2, homeostatic model assessment of insulin resistance ≥ 2.15, and greater psoriasis area severity index. NAFLD patients also had significantly higher levels of TNF-α (p = 0.002) and TGF-β (p = 0.007) and a higher prevalence of bacterial translocation (29.7% vs. 13.7%; p = 0.004). Liver stiffness measurement was over 7.8 kPa in 17.2% (15/87) of NAFLD patients; 13 of these underwent liver biopsy, and 5.7% (5/87) had liver fibrosis, while 1.1% (1/87) had advanced fibrosis or non-alcoholic steatohepatitis. In conclusion the prevalence of NAFLD in patients with psoriasis is high and associated with a higher prevalence of metabolic syndrome features, bacterial translocation and a higher pro-inflammatory state. It is worth mentioning that liver fibrosis and non-alcoholic steatohepatitis are not frequent in this population of patients.
The removal of anionic and cationic dyes from an aqueous solution using biomass-based activated carbon
Authors: Nizam Nurul Umairah M. , Hanafiah Marlia M. , Mahmoudi Ebrahim , Halim Azhar A. , Mohammad Abdul Wahab
Published: April 2021

In this study, two biomass-based adsorbents were used as new precursors for optimizing synthesis conditions of a cost-effective powdered activated carbon (PAC). The PAC removed dyes from an aqueous solution using carbonization and activation by KOH, NaOH, and H2SO4. The optimum synthesis, activation temperature, time and impregnation ratio, removal rate, and uptake capacity were determined. The optimum PAC was analyzed and characterized using Fourier-transform infrared spectroscopy (FTIR), x-ray diffraction (XRD), a field emission scanning electron microscope (FESEM), Zeta potential, and Raman spectroscopy. Morphological studies showed single-layered planes with highly porous surfaces, especially PAC activated by NaOH and H2SO4. The results showed that the experimental data were well-fitted with a pseudo-second-order model. Based on Langmuir isotherm, the maximum adsorption capacity for removing methylene blue (MB) was 769.23 mg g−1 and 458.43 mg g−1 for congo red (CR). Based on the isotherm models, more than one mechanism was involved in the adsorption process, monolayer for the anionic dye and multilayer for the cationic dye. Elovich and intraparticle diffusion kinetic models showed that rubber seed shells (RSS) has higher α values with a greater tendency to adsorb dyes compared to rubber seed (RS). A thermodynamic study showed that both dyes’ adsorption process was spontaneous and exothermic due to the negative values of the enthalpy (ΔH) and Gibbs free energy (ΔG). The change in removal efficiency of adsorbent for regeneration study was observed in the seventh cycles, with a 3% decline in the CR and 2% decline in MB removal performance. This study showed that the presence of functional groups and active sites on the produced adsorbent (hydroxyl, alkoxy, carboxyl, and π − π) contributed to its considerable affinity for adsorption in dye removal. Therefore, the optimum PAC can serve as efficient and cost-effective adsorbents to remove dyes from industrial wastewater.
Alternative redox forms of ASNA-1 separate insulin signaling from tail-anchored protein targeting and cisplatin resistance in C. elegans
Authors: Raj Dorota , Billing Ola , Podraza-Farhanieh Agnieszka , Kraish Bashar , Hemmingsson Oskar , Kao Gautam , Naredi Peter
Published: April 2021

Cisplatin is a frontline cancer therapeutic, but intrinsic or acquired resistance is common. We previously showed that cisplatin sensitivity can be achieved by inactivation of ASNA-1/TRC40 in mammalian cancer cells and in Caenorhabditis elegans. ASNA-1 has two more conserved functions: in promoting tail-anchored protein (TAP) targeting to the endoplasmic reticulum membrane and in promoting insulin secretion. However, the relation between its different functions has remained unknown. Here, we show that ASNA-1 exists in two redox states that promote TAP-targeting and insulin secretion separately. The reduced state is the one required for cisplatin resistance: an ASNA-1 point mutant, in which the protein preferentially was found in the oxidized state, was sensitive to cisplatin and defective for TAP targeting but had no insulin secretion defect. The same was true for mutants in wrb-1, which we identify as the C. elegans homolog of WRB, the ASNA1/TRC40 receptor. Finally, we uncover a previously unknown action of cisplatin induced reactive oxygen species: cisplatin induced ROS drives ASNA-1 into the oxidized form, and selectively prevents an ASNA-1-dependent TAP substrate from reaching the endoplasmic reticulum. Our work suggests that ASNA-1 acts as a redox-sensitive target for cisplatin cytotoxicity and that cisplatin resistance is likely mediated by ASNA-1-dependent TAP substrates. Treatments that promote an oxidizing tumor environment should be explored as possible means to combat cisplatin resistance.
Linking the Wrangellia flood basalts to the Galápagos hotspot
Authors: Shellnutt J. Gregory , Dostal Jaroslav , Lee Tung-Yi
Published: April 2021

The Triassic volcanic rocks of Wrangellia erupted at an equatorial to tropical latitude that was within 3000 km of western North America. The mafic and ultramafic volcanic rocks are compositionally and isotopically similar to those of oceanic plateaux that were generated from a Pacific mantle plume-type source. The thermal conditions, estimated from the primitive rocks, indicate that it was a high temperature regime (TP > 1550 °C) consistent with elevated temperatures expected for a mantle plume. The only active hotspot currently located near the equator of the eastern Pacific Ocean that was active during the Mesozoic and produced ultramafic volcanic rocks is the Galápagos hotspot. The calculated mantle potential temperatures, trace elemental ratios, and Sr–Nd–Pb isotopes of the Wrangellia volcanic rocks are within the range of those from the Caribbean Plateau and Galápagos Islands, and collectively have similar internal variability as the Hawaii-Emperor island chain. The paleogeographic constraints, thermal estimates, and geochemistry suggests that it is possible that the Galápagos hotspot generated the volcanic rocks of Wrangellia and the Caribbean plateau or, more broadly, that the eastern Pacific (Panthalassa) Ocean was a unique region where anomalously high thermal conditions either periodically or continually existed from ~ 230 Ma to the present day.
Resistance exercise training improves glucose homeostasis by enhancing insulin secretion in C57BL/6 mice
Authors: Bronczek Gabriela Alves , Soares Gabriela Moreira , de Barros Jaqueline Fernandes , Vettorazzi Jean Franciesco , Kurauti Mirian Ayumi , Marconato-Júnior Emílio , Zangerolamo Lucas , Marmentini Carine , Boschero Antonio Carlos , Costa-Júnior José Maria
Published: April 2021

Resistance exercise exerts beneficial effects on glycemic control, which could be mediated by exercise-induced humoral factors released in the bloodstream. Here, we used C57Bl/6 healthy mice, submitted to resistance exercise training for 10 weeks. Trained mice presented higher muscle weight and maximum voluntary carrying capacity, combined with reduced body weight gain and fat deposition. Resistance training improved glucose tolerance and reduced glycemia, with no alterations in insulin sensitivity. In addition, trained mice displayed higher insulinemia in fed state, associated with increased glucose-stimulated insulin secretion. Islets from trained mice showed reduced expression of genes related to endoplasmic reticulum (ER) stress, associated with increased expression of Ins2. INS-1E beta-cells incubated with serum from trained mice displayed similar pattern of insulin secretion and gene expression than isolated islets from trained mice. When exposed to CPA (an ER stress inducer), the serum from trained mice partially preserved the secretory function of INS-1E cells, and prevented CPA-induced apoptosis. These data suggest that resistance training, in healthy mice, improves glucose homeostasis by enhancing insulin secretion, which could be driven, at least in part, by humoral factors.
Large asymmetry in the magnetoresistance loops of ferromagnetic nanostrips induced by Surface Acoustic Waves
Authors: Castilla David , Muñoz Manuel , Sinusía Miguel , Yanes Rocío , Prieto José L.
Published: April 2021

In this work we show that Surface Acoustic Waves (SAW) can induce a very large asymmetry in the magnetoresistance loop of an adjacent ferromagnetic nanostrip, making it look as if it had exchange bias. The Surface Acoustic Wave induces a DC voltage in the ferromagnetic nanostrip. For measurements at constant current, this DC voltage makes the AMR loop asymmetric. In a series of different electrical experiments, we disentangle two different contributions to the induced DC voltage. One of them is independent on the external magnetic field and it is likely due to the acoustoelectric effect. A second contribution depends on the external magnetic field and it is a rectified voltage induced in the piezoelectric substrate as a response to the magnetization dynamics in the magnetostrictive nanostrip. The large asymmetry in the magnetoresistance loop reported in this work is a manifestation of an effective transfer of energy from the SAW to the magnetization dynamics, a mechanism that has been very recently appointed as a possible mean to harvest energy from a heat source.
Design and analysis of a fiber-optic sensing system for shape reconstruction of a minimally invasive surgical needle
Authors: Issatayeva Aizhan , Amantayeva Aida , Blanc Wilfried , Tosi Daniele , Molardi Carlo
Published: April 2021

This paper presents the performance analysis of the system for real-time reconstruction of the shape of the rigid medical needle used for minimally invasive surgeries. The system is based on four optical fibers glued along the needle at 90 degrees from each other to measure distributed strain along the needle from four different sides. The distributed measurement is achieved by the interrogator which detects the light scattered from each section of the fiber connected to it and calculates the strain exposed to the fiber from the spectral shift of that backscattered light. This working principle has a limitation of discriminating only a single fiber because of the overlap of backscattering light from several fibers. In order to use four sensing fibers, the Scattering-Level Multiplexing (SLMux) methodology is applied. SLMux is based on fibers with different scattering levels: standard single-mode fibers (SMF) and MgO-nanoparticles doped fibers with a 35–40 dB higher scattering power. Doped fibers are used as sensing fibers and SMFs are used to spatially separate one sensing fiber from another by selecting appropriate lengths of SMFs. The system with four fibers allows obtaining two pairs of opposite fibers used to reconstruct the needle shape along two perpendicular axes. The performance analysis is conducted by moving the needle tip from 0 to 1 cm by 0.1 cm to four main directions (corresponding to the locations of fibers) and to four intermediate directions (between neighboring fibers). The system accuracy for small bending (0.1–0.5 cm) is 90$$\%$$%and for large bending (0.6–1 cm) is approximately 92$$\%$$%.
Observation of void formation patterns in SnAg films undergoing electromigration and simulation using random walk methods
Authors: Jin Zhi , Shen Yu-An , Zuo Yang , Chan Y. C. , Mannan S. H. , Nishikawa Hiroshi
Published: April 2021

With the ever-reducing sizes of electronic devices, the problem of electromigration (EM) has become relevant and requires attention. However, only the EM behavior of Sn–Ag solders within the solder joint structure has been focused on thus far. Therefore, in this study, a thin metallic film composed of Sn–3.5Ag (wt.%) was subjected to a current density of 7.77 × 104 A/cm2 at a temperature of 15 °C to test the ability of existing EM models to predict the nucleation and evolution of voids generated by the resulting atomic migration. A computer simulation was then used to compute the coupled current distribution, thermal distribution, and atomic migration problems. It relied on an original random walk (RW) method, not previously applied to this problem, that is particularly well suited for modelling domains that undergo changes owing to the formation of voids. A comparison of the experimental results and computer simulations proves that the RW method can be applied successfully to this class of problems, but it also shows that imperfections in the film can lead to deviations from predicted patterns.
Contribution of PDGFRα-positive cells in maintenance and injury responses in mouse large vessels
Authors: Kimura Kenichi , Ramirez Karina , Nguyen Tram Anh Vu , Yamashiro Yoshito , Sada Aiko , Yanagisawa Hiromi
Published: April 2021

The maladaptive remodeling of vessel walls with neointima formation is a common feature of proliferative vascular diseases. It has been proposed that neointima formation is caused by the dedifferentiation of mature smooth muscle cells (SMCs). Recent evidence suggests that adventitial cells also participate in neointima formation; however, their cellular dynamics are not fully understood. In this study, we utilized a lineage tracing model of platelet-derived growth factor receptor alpha (PDGFRa) cells and examined cellular behavior during homeostasis and injury response. PDGFRa marked adventitial cells that were largely positive for Sca1 and a portion of medial SMCs, and both cell types were maintained for 2 years. Upon carotid artery ligation, PDGFRa-positive (+) cells were slowly recruited to the neointima and exhibited an immature SMC phenotype. In contrast, in a more severe wire denudation injury, PDGFRa+ cells were recruited to the neointima within 14 days and fully differentiated into SMCs. Under pressure overload induced by transverse aortic constriction, PDGFRa+ cells developed marked adventitial fibrosis. Taken together, our observations suggest that PDGFRa+ cells serve as a reservoir of adventitial cells and a subset of medial SMCs and underscore their context-dependent response to vascular injuries.