bluuebunny/crossref_metadata_2025 huggingface dataset:
Characterization of the Cellular Microenvironment and Novel Specific Biomarkers in Pterygia Using RNA Sequencing
Authors: Wolf Julian , Hajdu Rozina Ida , Boneva Stefaniya , Schlecht Anja , Lapp Thabo , Wacker Katrin , Agostini Hansjürgen , Reinhard Thomas , Auw-Hädrich Claudia , Schlunck Günther , Lange Clemens
Published: January 2022

With a worldwide prevalence of ~12%, pterygium is a common degenerative and environmentally triggered ocular surface disorder characterized by wing-shaped growth of conjunctival tissue onto the cornea that can lead to blindness if left untreated. This study characterizes the transcriptional profile and the cellular microenvironment of conjunctival pterygia and identifies novel pterygia-specific biomarkers. Formalin-fixed and paraffin-embedded pterygia as well as healthy conjunctival specimens were analyzed using MACE RNA sequencing (n = 8 each) and immunohistochemistry (pterygia n = 7, control n = 3). According to the bioinformatic cell type enrichment analysis using xCell, the cellular microenvironment of pterygia was characterized by an enrichment of myofibroblasts, T-lymphocytes and various antigen-presenting cells, including dendritic cells and macrophages. Differentially expressed genes that were increased in pterygia compared to control tissue were mainly involved in autophagy (including DCN, TMBIM6), cellular response to stress (including TPT1, DDX5) as well as fibroblast proliferation and epithelial to mesenchymal transition (including CTNNB1, TGFBR1, and FN1). Immunohistochemical analysis confirmed a significantly increased FN1 stromal immunoreactivity in pterygia when compared to control tissue. In addition, a variety of factors involved in apoptosis were significantly downregulated in pterygia, including LCN2, CTSD, and NISCH. Furthermore, 450 pterygia-specific biomarkers were identified by including transcriptional data of different ocular surface pathologies serving as controls (training group), which were then validated using transcriptional data of cultured human pterygium cells. Among the most pterygia-specific factors were transcripts such as AHNAK, RTN4, TPT1, FSTL1, and SPARC. Immunohistochemical validation of SPARC revealed a significantly increased stromal immunoreactivity in pterygia when compared to controls, most notably in vessels and intravascular vessel wall-adherent mononuclear cells. Taken together, the present study provides new insights into the cellular microenvironment and the transcriptional profile of pterygia, identifies new and specific biomarkers and in addition to fibrosis-related genes, uncovers autophagy, stress response and apoptosis modulation as pterygium-associated processes. These findings expand our understanding of the pathophysiology of pterygia, provide new diagnostic tools, and may enable new targeted therapeutic options for this common and sight-threatening ocular surface disease.
Successful Simultaneous Subtotal Splenectomy During Left Lobe Auxiliary Liver Transplantation for Portal Inflow Modulation and Severe Hypersplenism Correction: A Case Report
Authors: Zhou Guang-Peng , Qu Wei , Zeng Zhi-Gui , Sun Li-Ying , Liu Ying , Wei Lin , Zhu Zhi-Jun
Published: January 2022

Adult-to-adult living donor liver transplantation with small partial liver grafts often requires intraoperative portal inflow modulation to prevent portal hyperperfusion and subsequent small-for-size syndrome (SFSS). However, there are concerns about the specific morbidity of these modulation techniques. This study aims to lower post-perfusion portal venous pressure and correct severe hypersplenism in a patient with end-stage liver cirrhosis by simultaneous subtotal splenectomy during auxiliary partial orthotopic liver transplantation (APOLT). A 29-year-old man was diagnosed with cryptogenic cirrhosis and severe portal hypertension suffered recurrent acute variceal bleeding, severe thrombocytopenia, and massive ascites before admission to our hospital. After the recipient's left liver was resected, we performed APOLT using his 51-year-old father's left lobe graft with a graft-to-recipient weight ratio of 0.55%. Intraoperatively, simultaneous subtotal splenectomy was performed to lower graft post-perfusion portal vein pressure below 15 mmHg and correct severe hypersplenism-related pancytopenia. The recipient's postoperative hospital course was uneventful with no occurrence of SFSS and procedure-related complications. Platelet and leukocyte counts remained in the normal ranges postoperatively. The living donor was discharged 6 days after the operation and recovered well-with no complications. After a follow-up period of 35.3 months, both the recipient and donor live with good liver function and overall condition. This is the first case report of simultaneous subtotal splenectomy during APOLT using small-for-size living-donated left liver lobes, which is demonstrated to be a viable procedure for modulating portal inflow and correcting severe hypersplenism in selected adult patients with end-stage liver cirrhosis. APOLT using a small-for-size liver graft may be a safe and feasible treatment option for selected adult patients with end-stage liver cirrhosis.
Hyunsoonleella sp. HU1-3 Increased the Biomass of Ulva fasciata
Authors: Wang Han , Elyamine Ali Mohamed , Liu Yuchun , Liu Wei , Chen Qixuan , Xu Yan , Peng Tao , Hu Zhong
Published: January 2022

Green algae are photosynthetic organisms and play an important role in coastal environment. The microbial community on the surface of green algae has an effect on the health and nutrition of the host. However, few species of epiphytic microbiota have been reported to play a role in promoting the growth of algae. In this study, 16S rDNA sequencing was used to study the changes of microbial composition on the surface of Ulva fasciata at different growth stages. Some growth promoting bacteria were identified. The possible growth-promoting behavior of the strains were verified by co-culture of pure bacteria obtained from the surface of U. fasciata with its sterile host. Among the identified species, a new bacterial species, Hyunsoonleella sp. HU1-3 (belonging to the family Flavobacteriaceae) significantly promoted the growth of U. fasciata. The results also showed that there were many genes involved in the synthesis of growth hormone and cytokinin in the genome of Hyunsoonleella sp. HU1-3. This study identified the bacterium Hyunsoonleella sp. HU1-3 for the first time, in which this bacterium has strong growth-promoting effects on U. fasciata. Our findings not only provide insights on the establishment of the surface microbiota of U. fasciata, but also indicate that Hyunsoonleella sp. HU1-3 is one of the important species to promote the growth of U. fasciata.
Comparative Genomics Reveal the Animal-Associated Features of the Acanthopleuribacteraceae Bacteria, and Description of Sulfidibacter corallicola gen. nov., sp., nov.
Authors: Wang Guanghua , Li Yuanjin , Liu Jianfeng , Chen Biao , Su Hongfei , Liang Jiayuan , Huang Wen , Yu Kefu
Published: January 2022

Members of the phylum Acidobacteria are ubiquitous in various environments. Soil acidobacteria have been reported to present a variety of strategies for their success in terrestrial environments. However, owing to lack of pure culture, information on animal-associated acidobacteria are limited, except for those obtained from 16S rRNA genes. To date, only two acidobacteria have been isolated from animals, namely strain M133T obtained from coral Porites lutea and Acanthopleuribacter pedis KCTC 12899T isolated from chiton. Genomics and physiological characteristics of strain M133T and A. pedis KCTC 12899T were compared with 19 other isolates (one strain from each genus) in the phylum Acidobacteria. The results revealed that strain M133T represents a new species in a new genus in the family Acanthopleuribacteraceae. To date, these two Acanthopleuribacteraceae isolates have the largest genomes (10.85–11.79 Mb) in the phylum Acidobacteria. Horizontal gene transfer and gene duplication influenced the structure and plasticity of these large genomes. Dissimilatory nitrate reduction and abundant secondary metabolite biosynthetic gene clusters (including eicosapentaenoic acid de novo biosynthesis) are two distinct features of the Acanthopleuribacteraceae bacteria in the phylum Acidobacteria. The absence of glycoside hydrolases involved in plant polysaccharide degradation and presence of animal disease-related peptidases indicate that these bacteria have evolved to adapt to the animal hosts. In addition to low- and high-affinity respiratory oxygen reductases, enzymes for nitrate to nitrogen, and sulfhydrogenase were also detected in strain M133T, suggesting the capacity and flexibility to grow in aerobic and anaerobic environments. This study highlighted the differences in genome structure, carbohydrate and protein utilization, respiration, and secondary metabolism between animal-associated acidobacteria and other acidobacteria, especially the soil acidobacteria, displaying flexibility and versatility of the animal-associated acidobacteria in environmental adaption.
Development and Application of RAA Nucleic Acid Test Strip Assay and Double RAA Gel Electrophoresis Detection Methods for ASFV and CSFV
Authors: Wu Keke , Zhang Yuanyuan , Zeng Sen , Liu Xiaodi , Li Yuwan , Li Xiaowen , Chen Wenxian , Li Zhaoyao , Qin Yuwei , Chen Jinding , Fan Shuangqi
Published: January 2022

African swine fever (ASF) is an acute, severe and hemorrhagic infectious disease caused by African swine fever virus (ASFV) infecting domestic pigs and wild boars. Since the outbreak of the disease in China in 2018, it has brought a great impact on China’s pig industry. Classical swine fever (CSF) is an acute contact infectious disease of pigs caused by classical swine fever virus (CSFV) infection. Clinically, acute CSF usually shows persistent high fever, anorexia, extensive congestion and bleeding of the skin and mucosa, which are similar to ASF. It is of great significance to prevent, control and accurately detect ASF and CSF in pig farms. In this study, Recombinase aided amplification (RAA) technology combined with a nucleic acid test strip (RAA-strip) was established for simple and specific detection of ASFV/CSFV. The sensitivity and preliminary clinical application results showed that the RAA test strip established in this study could detect recombinant plasmids containing ASFV/CSFV gene fragments as low as 103 copies/µL. The minimum detection limits of virus DNA/cDNA were 10 and 12 pg respectively, and there was no cross-reaction with other porcine viruses. The specificity of the method was good. We used 37–42 clinical samples to evaluate the performance of our established method, and the positive concordance rates with conventional PCR were 94.1 and 57.1%, respectively. In addition, ASFV and CSFV double RAA agarose gel electrophoresis detection methods were established. The results showed that the method had good specificity. The detection limit of this method is 106 copies for ASFV p72 gene recombinant plasmid and 105 copies for CSFV NS5B Gene recombinant plasmid. The use of this method for clinical material detection was consistent with the PCR method. In summary, the developed method of RAA-strip assay for ASFV and CSFV realized the visual detection of pathogens, and the developed method of dual RAA agarose gel electrophoresis assay for ASFV and CSFV realized the simultaneous detection of two pathogens in one reaction, with good specificity, high sensitivity and rapid reaction rate, which was expected to be clinically feasible for the differential diagnosis of ASF and CSF provided technical support.
The “Neural Shift” of Sleep Quality and Cognitive Aging: A Resting-State MEG Study of Transient Neural Dynamics
Authors: Tibon Roni , Tsvetanov Kamen A.
Published: January 2022

Sleep quality changes dramatically from young to old age, but its effects on brain dynamics and cognitive functions are not yet fully understood. We tested the hypothesis that a shift in brain networks dynamics relates to sleep quality and cognitive performance across the lifespan. Network dynamics were assessed using Hidden Markov Models (HMMs) in resting-state MEG data from a large cohort of population-based adults (N = 564, aged 18–88). Using multivariate analyses of brain-sleep profiles and brain-cognition profiles, we found an age-related “neural shift,” expressed as decreased occurrence of “lower-order” brain networks coupled with increased occurrence of “higher-order” networks. This “neural shift” was associated with both increased sleep dysfunction and decreased fluid intelligence, and this relationship was not explained by age, sex or other covariates. These results establish the link between poor sleep quality, as evident in aging, and a behavior-related shift in neural dynamics.
Role of Biogenic Capping Agents in the Synthesis of Metallic Nanoparticles and Evaluation of Their Therapeutic Potential
Authors: Sidhu Amanpreet K. , Verma Naveen , Kaushal Priya
Published: January 2022

The biomedical properties of nanoparticles have been the area of focus for contemporary science; however, there are issues concerning their long-term toxicities. Recent trends in nanoparticle fabrication and surface manipulation, the use of distinctive biogenic capping agents, have allowed the preparation of nontoxic, surface-functionalized, and monodispersed nanoparticles for medical applications. These capping agents act as stabilizers or binding molecules that prevent agglomeration and steric hindrance, alter the biological activity and surface chemistry, and stabilize the interaction of nanoparticles within the preparation medium. Explicit features of nanoparticles are majorly ascribed to the capping present on their surface. The present review article is an attempt to compile distinctive biological capping agents deployed in the synthesis of metal nanoparticles along with the medical applications of these capped nanoparticles. First, this innovative review highlights the various biogenic capping agents, including biomolecules and biological extracts of plants and microorganisms. Next, the therapeutic applications of capped nanoparticles and the effect of biomolecules on the efficiency of the nanoparticles have been expounded. Finally, challenges and future directions on the use of biological capping agents have been concluded. The goal of the present review article is to provide a comprehensive report to researchers who are looking for alternative biological capping agents for the green synthesis of important metallic nanoparticles.
Multi-Modal Integration of EEG-fNIRS for Characterization of Brain Activity Evoked by Preferred Music
Authors: Qiu Lina , Zhong Yongshi , Xie Qiuyou , He Zhipeng , Wang Xiaoyun , Chen Yingyue , Zhan Chang'an A. , Pan Jiahui
Published: January 2022

Music can effectively improve people's emotions, and has now become an effective auxiliary treatment method in modern medicine. With the rapid development of neuroimaging, the relationship between music and brain function has attracted much attention. In this study, we proposed an integrated framework of multi-modal electroencephalogram (EEG) and functional near infrared spectroscopy (fNIRS) from data collection to data analysis to explore the effects of music (especially personal preferred music) on brain activity. During the experiment, each subject was listening to two different kinds of music, namely personal preferred music and neutral music. In analyzing the synchronization signals of EEG and fNIRS, we found that music promotes the activity of the brain (especially the prefrontal lobe), and the activation induced by preferred music is stronger than that of neutral music. For the multi-modal features of EEG and fNIRS, we proposed an improved Normalized-ReliefF method to fuse and optimize them and found that it can effectively improve the accuracy of distinguishing between the brain activity evoked by preferred music and neutral music (up to 98.38%). Our work provides an objective reference based on neuroimaging for the research and application of personalized music therapy.
Uncoupling the Excitatory Amino Acid Transporter 2 From Its C-Terminal Interactome Restores Synaptic Glutamate Clearance at Corticostriatal Synapses and Alleviates Mutant Huntingtin-Induced Hypokinesia
Authors: Hirschberg Stefan , Dvorzhak Anton , Rasooli-Nejad Seyed M. A. , Angelov Svilen , Kirchner Marieluise , Mertins Philipp , Lättig-Tünnemann Gilla , Harms Christoph , Schmitz Dietmar , Grantyn Rosemarie
Published: January 2022

Rapid removal of glutamate from the sites of glutamate release is an essential step in excitatory synaptic transmission. However, despite many years of research, the molecular mechanisms underlying the intracellular regulation of glutamate transport at tripartite synapses have not been fully uncovered. This limits the options for pharmacological treatment of glutamate-related motor disorders, including Huntington’s disease (HD). We therefore investigated the possible binding partners of transgenic EAAT2 and their alterations under the influence of mutant huntingtin (mHTT). Mass spectrometry analysis after pull-down of striatal YFP-EAAT2 from wild-type (WT) mice and heterozygote (HET) Q175 mHTT-knock-in mice identified a total of 148 significant (FDR < 0.05) binders to full-length EAAT2. Of them 58 proteins exhibited mHTT-related differences. Most important, in 26 of the 58 mHTT-sensitive cases, protein abundance changed back toward WT levels when the mice expressed a C-terminal-truncated instead of full-length variant of EAAT2. These findings motivated new attempts to clarify the role of astrocytic EAAT2 regulation in cortico-basal movement control. Striatal astrocytes of Q175 HET mice were targeted by a PHP.B vector encoding EAAT2 with different degree of C-terminal modification, i.e., EAAT2-S506X (truncation at S506), EAAT2-4KR (4 lysine to arginine substitutions) or EAAT2 (full-length). The results were compared to HET and WT injected with a tag-only vector (CTRL). It was found that the presence of a C-terminal-modified EAAT2 transgene (i) increased the level of native EAAT2 protein in striatal lysates and perisynaptic astrocyte processes, (ii) enhanced the glutamate uptake of transduced astrocytes, (iii) stimulated glutamate clearance at individual corticostriatal synapses, (iv) increased the glutamate uptake of striatal astrocytes and (iv) alleviated the mHTT-related hypokinesia (open field indicators of movement initiation). In contrast, over-expression of full-length EAAT2 neither facilitated glutamate uptake nor locomotion. Together, our results support the new hypothesis that preventing abnormal protein-protein interactions at the C-terminal of EAAT2 could eliminate the mHTT-related deficits in corticostriatal synaptic glutamate clearance and movement initiation.
Application of New Materials in Auditory Disease Treatment
Authors: Li Ming , Mu Yurong , Cai Hua , Wu Han , Ding Yanyan
Published: January 2022

Auditory diseases are disabling public health problems that afflict a significant number of people worldwide, and they remain largely incurable until now. Driven by continuous innovation in the fields of chemistry, physics, and materials science, novel materials that can be applied to hearing diseases are constantly emerging. In contrast to conventional materials, new materials are easily accessible, inexpensive, non-invasive, with better acoustic therapy effects and weaker immune rejection after implantation. When new materials are used to treat auditory diseases, the wound healing, infection prevention, disease recurrence, hair cell regeneration, functional recovery, and other aspects have been significantly improved. Despite these advances, clinical success has been limited, largely due to issues regarding a lack of effectiveness and safety. With ever-developing scientific research, more novel materials will be facilitated into clinical use in the future.
Two-Scale Multimodal Medical Image Fusion Based on Structure Preservation
Authors: Liu Shuaiqi , Wang Mingwang , Yin Lu , Sun Xiuming , Zhang Yu-Dong , Zhao Jie
Published: January 2022

Medical image fusion has an indispensable value in the medical field. Taking advantage of structure-preserving filter and deep learning, a structure preservation-based two-scale multimodal medical image fusion algorithm is proposed. First, we used a two-scale decomposition method to decompose source images into base layer components and detail layer components. Second, we adopted a fusion method based on the iterative joint bilateral filter to fuse the base layer components. Third, a convolutional neural network and local similarity of images are used to fuse the components of the detail layer. At the last, the final fused result is got by using two-scale image reconstruction. The contrast experiments display that our algorithm has better fusion results than the state-of-the-art medical image fusion algorithms.
The Data Efficiency of Deep Learning Is Degraded by Unnecessary Input Dimensions
Authors: D'Amario Vanessa , Srivastava Sanjana , Sasaki Tomotake , Boix Xavier
Published: January 2022

Biological learning systems are outstanding in their ability to learn from limited training data compared to the most successful learning machines, i.e., Deep Neural Networks (DNNs). What are the key aspects that underlie this data efficiency gap is an unresolved question at the core of biological and artificial intelligence. We hypothesize that one important aspect is that biological systems rely on mechanisms such as foveations in order to reduce unnecessary input dimensions for the task at hand, e.g., background in object recognition, while state-of-the-art DNNs do not. Datasets to train DNNs often contain such unnecessary input dimensions, and these lead to more trainable parameters. Yet, it is not clear whether this affects the DNNs' data efficiency because DNNs are robust to increasing the number of parameters in the hidden layers, and it is uncertain whether this holds true for the input layer. In this paper, we investigate the impact of unnecessary input dimensions on the DNNs data efficiency, namely, the amount of examples needed to achieve certain generalization performance. Our results show that unnecessary input dimensions that are task-unrelated substantially degrade data efficiency. This highlights the need for mechanisms that remove task-unrelated dimensions, such as foveation for image classification, in order to enable data efficiency gains.
Fluid and Tissue Biomarkers of Lewy Body Dementia: Report of an LBDA Symposium
Authors: Scott Gregory D. , Arnold Moriah R. , Beach Thomas G. , Gibbons Christopher H. , Kanthasamy Anumantha G. , Lebovitz Russell M. , Lemstra Afina W. , Shaw Leslie M. , Teunissen Charlotte E. , Zetterberg Henrik , Taylor Angela S. , Graham Todd C. , Boeve Bradley F. , Gomperts Stephen N. , Graff-Radford Neill R. , Moussa Charbel , Poston Kathleen L. , Rosenthal Liana S. , Sabbagh Marwan N. , Walsh Ryan R. , Weber Miriam T. , Armstrong Melissa J. , Bang Jee A. , Bozoki Andrea C. , Domoto-Reilly Kimiko , Duda John E. , Fleisher Jori E. , Galasko Douglas R. , Galvin James E. , Goldman Jennifer G. , Holden Samantha K. , Honig Lawrence S. , Huddleston Daniel E. , Leverenz James B. , Litvan Irene , Manning Carol A. , Marder Karen S. , Pantelyat Alexander Y. , Pelak Victoria S. , Scharre Douglas W. , Sha Sharon J. , Shill Holly A. , Mari Zoltan , Quinn Joseph F. , Irwin David J.
Published: January 2022

The Lewy Body Dementia Association (LBDA) held a virtual event, the LBDA Biofluid/Tissue Biomarker Symposium, on January 25, 2021, to present advances in biomarkers for Lewy body dementia (LBD), which includes dementia with Lewy bodies (DLBs) and Parkinson's disease dementia (PDD). The meeting featured eight internationally known scientists from Europe and the United States and attracted over 200 scientists and physicians from academic centers, the National Institutes of Health, and the pharmaceutical industry. Methods for confirming and quantifying the presence of Lewy body and Alzheimer's pathology and novel biomarkers were discussed.
Women's Health in Multiple Sclerosis: A Scoping Review
Authors: Ross Lindsay , Ng Huah Shin , O'Mahony Julia , Amato Maria Pia , Cohen Jeffrey A. , Harnegie Mary Pat , Hellwig Kerstin , Tintore Mar , Vukusic Sandra , Marrie Ruth Ann
Published: January 2022

Background

Women with multiple sclerosis (MS) may face challenges related to managing reproduction, pregnancy, and menopause while simultaneously managing their disease. The purpose of this scoping review was to map the literature broadly related to topics relevant to women's health in MS to inform the clinical and research communities about the existing types and sources of evidence and knowledge gaps. Apart from coverage of topics within the field of women's health, we were interested in potential gaps related to geographic and racial and ethnic diversity. We also aimed to understand the degree of inclusion of women with progressive MS in this research.

Methods

We searched the EMBASE and Ovid Medline databases from 1980 until November 23, 2020. We included case-control and cohort studies, clinical trials and case series published in any language, conducted in women with MS, clinically isolated syndrome, or radiologically isolated syndrome, that addressed women's health. Two reviewers independently screened abstracts and full-text reports for study inclusion, and completed data extraction.

Results

Of 112,106 citations screened, 1,041 underwent full-text review and 353 met the inclusion criteria. The number of studies regarding women's health has increased exponentially over time. Almost half of the studies were conducted (at least in part) in Europe, while 21.7% were conducted in North America; only one study was conducted in Africa. Most studies did not report the race or ethnicity of their participants (n = 308, 87.2%). Among the 353 studies, 509 topics were reported as some studies addressed more than one topic. Over one-third of these focused on pregnancy (n = 201, 37.2%), followed by fetal/neonatal outcomes (14.4%) and sexual dysfunction (10%). Among the 201 studies that focused on pregnancy, only 51 (25.4%) included participants with progressive MS.

Conclusions

This review identifies important knowledge gaps related to women's health in MS and particularly the need for future studies to include participants with a broader range of races and ethnicities, with progressive MS, and living in Asia-Pacific and African regions.
Extended Neuroendoscopic Endonasal Approach for Resection of Craniopharyngioma in Children
Authors: Wu Danyang , Xu Ling , Xie Sungel , Sun Feiji , Xie Mingxiang , Wang Pei , Xiao Shunwu
Published: January 2022

Objective

To explore the surgical approach and technique of neuroendoscopic endonasal resection of pediatric craniopharyngiomas and to further evaluate its safety and effect in children.

Methods

The clinical data of 8 children with craniopharyngiomas who were surgically treated by neuroendoscopy through an extended endonasal approach in our center from 2018 to 2021 were retrospectively analyzed. The related surgical approach and technique were evaluated to improve the surgical results and further reduce the surgical complications when removing craniopharyngioma in children.

Results

All 8 patients achieved a gross-total resection of the tumor under neuroendoscopy. Postoperatively, 2 cases of transient hyperthermia and 4 cases of transient hyper- and/or hyponatremia occurred within the first 2 weeks, all of which were quickly controlled. Seven patients had symptoms of diabetes insipidus to varying degrees after the operation, and 4 of them improved within 1–3 months after surgery, but 3 cases still needed oral pituitrin. There were no cases of coma or death, leakage of cerebrospinal fluid, or severe electrolyte imbalance after surgery. During the postoperative follow-up of 3 months to 2 years, no tumor recurrence was found. Among the 7 patients who suffered postoperative neuroendocrine deficiencies, 3 patients were found to be temporary during the follow-up, but 4 patients still required hormone replacement therapy. Particularly, postoperative visual deterioration and olfactory defect that occurred in patients were all improved during follow-up periods. In addition, 4 cases of obesity were noted at the last follow-up.

Conclusions

Extended neuroendoscopic endonasal resection of craniopharyngiomas may be used as a safe and effective approach for children. Due to the poor pneumatization of the sphenoid sinus and worse compliance of treatment in children, surgical techniques of exposing the sellar region, removing the tumor, and reconstructing the skull base, as well as postoperative management of patients was proposed. However, due to the limited surgical cases in the study, the surgical safety and effects of the extended neuroendoscopic endonasal approach for children with craniopharyngiomas need to be further studied in the future.
Worldwide Tinnitus Research: A Bibliometric Analysis of the Published Literature Between 2001 and 2020
Authors: Zhou Fangwei , Zhang Tian , Jin Ying , Ma Yifei , Xian Zhipeng , Zeng Mengting , Yu Guodong
Published: January 2022

Background

In recent years, tinnitus has attracted increasing research interest. However, bibliometric analysis of global research on tinnitus is rare. The objective of this study was to identify and describe the foci and developing trends of tinnitus research using a bibliometric approach.

Methods

Publications related to tinnitus published from 2001 to 2020 were searched for in the Science Citation Index-Expanded (SCI-E) and Social Sciences Citation Index (SSCI) databases in the Web of Science Core Collection of Clarivate Analytics. The bibliometric approach was used to estimate the searched data, and VOSviewer and CiteSpace software were used to identify and analyze research foci and trends in the field of tinnitus.

Results

A total of 5,748 articles were included. The number of publications on tinnitus has increased dramatically in the last 20 years, especially since 2010. The leading country in terms of publications and access to collaborative networks was the United States. High-frequency keywords included tinnitus, hearing loss, prevalence, management, depression, mechanism, vertigo, hearing, inferior colliculus, and noise. The analyses of keyword burst detection indicated that prevalence, anxiety, and neural network are emerging research hotspots.

Conclusion

In the past 20 years, academic understanding of tinnitus has improved considerably. This study provides an objective, systematic, and comprehensive analysis of tinnitus-related literature. Furthermore, current hot spots and prospective trends in the field of tinnitus were identified. These results will assist otolaryngologists and audiologists in identifying the evolving dynamics of tinnitus research and highlight areas for prospective research.
Environmental Temperature in Thermal Comfort Under Different Virtual Tourism Activity Intensities: Based on Microclimate Simulation Experiment
Authors: Wang Linqiang , Wang Jiahui , Huang Xiaoting , Chi Honglei
Published: January 2022

Although COVID-19 lockdowns and travel regulations have restricted the spatial area for human activities, tourists can still use virtual devices and applications for travel purposes. This study aimed to explore the thermal comfort and satisfaction of tourists under various tourist activity intensities, using experimental and semi-structured interview methods, combined with microclimate simulation experiments and electrocardiogram data to monitor physiological indicators. The results showed that: (1) The thermal comfort of virtual tourists had a significant correlation with the environmental temperature. (2) The thermal comfort of virtual tourists differed under various activity intensities. The virtual tourism activity intensity moderated the relation between environmental temperature and tourists’ thermal comfort. (3) In the state of exercise (slow walking, fast walking), the environmental temperature affected tourists’ physiological indicators. (4) Virtual tourism that integrates realistic visual, audio, and tactile sensations can improve tourists’ perception and satisfaction. The results provide a new perspective for the study of the virtual tourism experience and thermal comfort. In addition, it provides theoretical and practical support for the development of virtual tourism scenes in the environmental temperature context.
Hierarchical Network Connectivity and Partitioning for Reconfigurable Large-Scale Neuromorphic Systems
Authors: Mysore Nishant , Hota Gopabandhu , Deiss Stephen R. , Pedroni Bruno U. , Cauwenberghs Gert
Published: January 2022

We present an efficient and scalable partitioning method for mapping large-scale neural network models with locally dense and globally sparse connectivity onto reconfigurable neuromorphic hardware. Scalability in computational efficiency, i.e., amount of time spent in actual computation, remains a huge challenge in very large networks. Most partitioning algorithms also struggle to address the scalability in network workloads in finding a globally optimal partition and efficiently mapping onto hardware. As communication is regarded as the most energy and time-consuming part of such distributed processing, the partitioning framework is optimized for compute-balanced, memory-efficient parallel processing targeting low-latency execution and dense synaptic storage, with minimal routing across various compute cores. We demonstrate highly scalable and efficient partitioning for connectivity-aware and hierarchical address-event routing resource-optimized mapping, significantly reducing the total communication volume recursively when compared to random balanced assignment. We showcase our results working on synthetic networks with varying degrees of sparsity factor and fan-out, small-world networks, feed-forward networks, and a hemibrain connectome reconstruction of the fruit-fly brain. The combination of our method and practical results suggest a promising path toward extending to very large-scale networks and scalable hardware-aware partitioning.
Sexually Dimorphic Neurotransmitter Release at the Neuromuscular Junction in Adult Caenorhabditis elegans
Authors: Yan Zhenzhen , Cheng Xinran , Li Yuansong , Su Zexiong , Zhou Yiwei , Liu Jie
Published: January 2022

Sexually dimorphic differentiation of sex-shared behaviors is observed across the animal world, but the underlying neurobiological mechanisms are not fully understood. Here we report sexual dimorphism in neurotransmitter release at the neuromuscular junctions (NMJs) of adult Caenorhabditis elegans. Studying worm locomotion confirms sex differences in spontaneous locomotion of adult animals, and quantitative fluorescence analysis shows that excitatory cholinergic synapses, but not inhibitory GABAergic synapses exhibit the adult-specific difference in synaptic vesicles between males and hermaphrodites. Electrophysiological recording from the NMJ of C. elegans not only reveals an enhanced neurotransmitter release but also demonstrates increased sensitivity of synaptic exocytosis to extracellular calcium concentration in adult males. Furthermore, the cholinergic synapses in adult males are characterized with weaker synaptic depression but faster vesicle replenishment than that in hermaphrodites. Interestingly, T-type calcium channels/CCA-1 play a male-specific role in acetylcholine release at the NMJs in adult animals. Taken together, our results demonstrate sexually dimorphic differentiation of synaptic mechanisms at the C. elegans NMJs, and thus provide a new mechanistic insight into how biological sex shapes animal behaviors through sex-shared neurons and circuits.
Robust Transcriptional Profiling and Identification of Differentially Expressed Genes With Low Input RNA Sequencing of Adult Hippocampal Neural Stem and Progenitor Populations
Authors: Denninger Jiyeon K. , Walker Logan A. , Chen Xi , Turkoglu Altan , Pan Alex , Tapp Zoe , Senthilvelan Sakthi , Rindani Raina , Kokiko-Cochran Olga N. , Bundschuh Ralf , Yan Pearlly , Kirby Elizabeth D.
Published: January 2022

Multipotent neural stem cells (NSCs) are found in several isolated niches of the adult mammalian brain where they have unique potential to assist in tissue repair. Modern transcriptomics offer high-throughput methods for identifying disease or injury associated gene expression signatures in endogenous adult NSCs, but they require adaptation to accommodate the rarity of NSCs. Bulk RNA sequencing (RNAseq) of NSCs requires pooling several mice, which impedes application to labor-intensive injury models. Alternatively, single cell RNAseq can profile hundreds to thousands of cells from a single mouse and is increasingly used to study NSCs. The consequences of the low RNA input from a single NSC on downstream identification of differentially expressed genes (DEGs) remains insufficiently explored. Here, to clarify the role that low RNA input plays in NSC DEG identification, we directly compared DEGs in an oxidative stress model of cultured NSCs by bulk and single cell sequencing. While both methods yielded DEGs that were replicable, single cell sequencing using the 10X Chromium platform yielded DEGs derived from genes with higher relative transcript counts compared to non-DEGs and exhibited smaller fold changes than DEGs identified by bulk RNAseq. The loss of high fold-change DEGs in the single cell platform presents an important limitation for identifying disease-relevant genes. To facilitate identification of such genes, we determined an RNA-input threshold that enables transcriptional profiling of NSCs comparable to standard bulk sequencing and used it to establish a workflow for in vivo profiling of endogenous NSCs. We then applied this workflow to identify DEGs after lateral fluid percussion injury, a labor-intensive animal model of traumatic brain injury. Our work joins an emerging body of evidence suggesting that single cell RNA sequencing may underestimate the diversity of pathologic DEGs. However, our data also suggest that population level transcriptomic analysis can be adapted to capture more of these DEGs with similar efficacy and diversity as standard bulk sequencing. Together, our data and workflow will be useful for investigators interested in understanding and manipulating adult hippocampal NSC responses to various stimuli.
Evaluation of ITGA3 as a Biomarker of Progression and Recurrence in Papillary Thyroid Carcinoma
Authors: Zhang Guoliang , Li Bing , Lin Yuanmei
Published: January 2022

Objective

To investigate the expression of ITGA3 and its association with clinical outcomes in papillary thyroid carcinoma (PTC).

Methods

The expression level, association with clinicopathologic characteristics, co-expressed genes, signaling pathways of ITGA3 in thyroid cancer were comprehensively analyzed using bioinformatics analysis through multiple public gene databases. PTC specimens and cell lines were used to verify the results of bioinformatics analysis.

Results

Data mining based on the Oncomine database revealed that ITGA3 expression in classical PTC and tall cell variant PTC was much higher than that in normal thyroid tissue except the follicular variant PTC. Analysis based on The Cancer Genome Atlas (TCGA) database showed that the expression of ITGA3 varies greatly in pathological stages, pathological types, tumor invasion stages, and lymph node metastasis stages of thyroid carcinoma. High expression level of ITGA3 was correlated with tumor regional invasion and lymph node metastasis. Multivariate analysis using logistic regression model showed that high expression of ITGA3 was a risk factor that associated with PTC recurrence and lymph node metastasis. Survival analysis showed that patients with high expression of ITGA3 in PTC had a poorer relapse-free survival (RFS) than patients with low expression of ITGA3 (P < 0.05). Immunohistochemistry experiments showed that the expression of ITGA3 in recurrent thyroid cancer tissues was stronger than that in no-recurrent thyroid cancer tissues (P < 0.05). Knockdown of ITGA3 by sh-RNA in PTC cell lines suppresses cell viability and invasive and migrating capacity.

Conclusion

ITGA3 is overexpressed in PTC, especially in those with higher tumor invasion grades and lymph node metastasis, and was associated with recurrence and poor RFS of PTC. High expression of ITGA3 may have the potential role of predicting PTC recurrence and lymph node metastasis.
Comprehensive Output Estimation of Double Scattering Proton System With Analytical and Machine Learning Models
Authors: Zhu Jiahua , Cui Taoran , Zhang Yin , Zhang Yang , Ma Chi , Liu Bo , Nie Ke , Yue Ning J. , Wang Xiao
Published: January 2022

Objectives

The beam output of a double scattering proton system varies for each combination of beam option, range, and modulation and therefore is difficult to be accurately modeled by the treatment planning system (TPS). This study aims to design an empirical method using the analytical and machine learning (ML) models to estimate proton output in a double scattering proton system.

Materials and Methods

Three analytical models using polynomial, linear, and logarithm–polynomial equations were generated on a training dataset consisting of 1,544 clinical measurements to estimate proton output for each option. Meanwhile, three ML models using Gaussian process regression (GPR) with exponential kernel, squared exponential kernel, and rational quadratic kernel were also created for all options combined. The accuracy of each model was validated against 241 additional clinical measurements as the testing dataset. Two most robust models were selected, and the minimum number of samples needed for either model to achieve sufficient accuracy ( ± 3%) was determined by evaluating the mean average percentage error (MAPE) with increasing sample number. The differences between the estimated outputs using the two models were also compared for 1,000 proton beams with a randomly generated range, and modulation for each option.

Results

The polynomial model and the ML GPR model with exponential kernel yielded the most accurate estimations with less than 3% deviation from the measured outputs. At least 20 samples of each option were needed to build the polynomial model with less than 1% MAPE, whereas at least a total of 400 samples were needed for all beam options to build the ML GPR model with exponential kernel to achieve comparable accuracy. The two independent models agreed with less than 2% deviation using the testing dataset.

Conclusion

The polynomial model and the ML GPR model with exponential kernel were built for proton output estimation with less than 3% deviations from the measurements. They can be used as an independent output prediction tool for a double scattering proton beam and a secondary output check tool for a cross check between themselves.
ASF1B: A Possible Prognostic Marker, Therapeutic Target, and Predictor of Immunotherapy in Male Thyroid Carcinoma
Authors: Qiu Weigang , Wu Xinquan , Shi Haihong , Liu Bingyang , Li Liqiong , Wu Wenyi , Lin Jianqing
Published: January 2022

Background

Thyroid carcinoma (TC) is the most common malignant endocrine tumor worldwide. Several studies have documented that male patients with TC have a higher rate of metastasis and disease recurrence than female patients. However, the mechanism underlying this observation is not completely clear. The goal of our research was to investigate the potential key candidate genes and pathways related to TC progression in male patients at the molecular level.

Methods

A total of 320 samples were obtained from The Cancer Genome Atlas (TCGA) and Genotype-Tissue Expression (GTEx) databases. Hub genes were screened out using weighted gene coexpression network analysis (WGCNA) and a protein–protein interaction (PPI) network analysis. Survival analysis was used to identify hub genes associated with disease-free survival (DFS) rates. Estimation of STromal and Immune cells in MAlignant Tumor tissues using Expression (ESTIMATE) data were used to assess the relationship between hub genes and immune cell infiltration. The molecular mechanism and biological functions of hub genes were explored using RT-qPCR, Western blot, Cell Counting Kit-8 Assay, flow cytometry, Transwell assays, and scratch assays.

Results

Forty-seven hub genes were identified, and the survival analysis demonstrated that anti-silencing function 1B (ASF1B) was the sole independent risk factor for poor DFS in male TC patients. Possible associations between the results from the ESTIMATE analysis showed that the ASF1B expression level was related to the ESTIMATE score, immune score, and T-cell regulatory (Treg) infiltration level. Through in vitro cell function experiments, we verified that knockdown of ASF1B inhibited KTC-1 cell proliferation, promoted cell apoptosis, and blocked cell cycle. The silencing of ASF1B reduced protein kinase B (AKT), phospho-AKT (p-AKT), and forkhead box p3 (FOXP3) in KTC-1 cells. Moreover, FOXP3 overexpression markedly restored the cell migration, invasion, and proliferation abilities repressed by ASF1B knockdown.

Conclusions

Our results indicate that ASF1B can be considered a prognostic marker, therapeutic target, and predictor of immunotherapy response in male thyroid cancer patients. However, further in-depth studies are required to validate this finding.
Transoral Robotic Surgery for Early-T Stage Glottic Cancer Involving the Anterior Commissure—News and Update
Authors: Wang Chen-Chi , Lin Wen-Jiun , Wang Jing-Jie , Chen Chien-Chih , Liang Kai-Li , Huang Yen-Jung
Published: January 2022

Background

About 20% of all glottic carcinomas involve the anterior commissure (AC), and AC involvement was deemed to be a risk factor of local recurrence and poor prognosis. Transoral robotic surgery (TORS) has been developed for a panoramic view of the AC and en-bloc resection of the tumor by multidirectional dissection with endo-wristed instruments. With satisfactory preliminary results, we would like to update the data with a bigger cohort and present the news on using TORS for salvage treatment of recurrence from irradiation failure.

Methods

From July 2010 to December 2019, 22 patients with early T1 and 2 stage primary (n = 11) or recurrent (n = 11) glottic cancer with AC involvement received TORS without adjuvant therapy. TORS exposure was found to be better than TLM by conventional laryngoscopy in diagnostic biopsy. Seven of the 22 patients had recurrent cancer from irradiation failure. The perioperative factors that may be associated with survival were retrospectively analyzed, and the 5-year overall survival (OS)/disease-specific survival (DSS)/recurrence-free survival (RFS)/and organ preservation survival (OPS) rate were estimated by the Kaplan–Meier Method. Their voice and swallowing functions were evaluated by questionnaires of Voice Handicap Index-10 (VHI-10) and Functional Outcome Swallowing Scale (FOSS).

Results

All 22 TORSs were completed smoothly. After a mean follow-up of 49 ± 35.9 months, the Kaplan–Meier method estimated 5-year OS/DSS/RFS/OPS was 93.8%, 93.8%, 74.6%, and 86.3%, respectively. Our 11 patients with fresh cancer had 100% recurrence-free survival. Although the recurrent rate was higher in patients with history of RT, they could be rescued by further open laryngectomy without compromising the OS and DSS. Only one patient expired. The other 21 patients had satisfactory swallowing function with FOSS of 0.33 ± 0.66. Five patients depended on tracheostomy, but the rest 17 patients had serviceable voice with VHI-10 of 18.41 ± 11.29.

Conclusions

TORS could be used in the primary or salvage management of glottic cancer with AC involvement while TORS was confirmed to have better exposure to TLM. The RFS was good for patients with primary cancer. In patients having irradiation failure, TORS could also be a minimally invasive transoral approach before trying open surgery to preserve the organ.