bluuebunny/crossref_metadata_2025 huggingface dataset:
Frontiers and hotspots evolution in anti-inflammatory studies for coronary heart disease: A bibliometric analysis of 1990–2022
Authors: Zhang Jiale , Ji Chenyang , Zhai Xu , Tong Hongxuan , Hu Jingqing
Published: February 2023

Background

Coronary heart disease (CHD) is characterized by forming of arterial plaques composed mainly of lipids, calcium, and inflammatory cells. These plaques narrow the lumen of the coronary artery, leading to episodic or persistent angina. Atherosclerosis is not just a lipid deposition disease but an inflammatory process with a high-specificity cellular and molecular response. Anti-inflammatory treatment for CHD is a promising therapy; several recent clinical studies (CANTOS, COCOLT, and LoDoCo2) provide therapeutic directions. However, bibliometric analysis data on anti-inflammatory conditions in CHD are lacking. This study aims to provide a comprehensive visual perspective on the anti-inflammatory research in CHD and will contribute to further research.

Materials and methods

All the data were collected from the Web of Science Core Collection (WoSCC) database. We used the Web of Science’s systematic tool to analyze the year of countries/regions, organizations, publications, authors, and citations. CiteSpace and VOSviewer were used to construct visual bibliometric networks to reveal the current status and emerging hotspot trends for anti-inflammatory intervention in CHD.

Results

5,818 papers published from 1990 to 2022 were included. The number of publications has been on the rise since 2003. Libby Peter is the most prolific author in the field. “Circulation” was ranked first in the number of journals. The United States has contributed the most to the number of publications. The Harvard University System is the most published organization. The top 5 clusters of keywords co-occurrence are inflammation, C-reactive protein, coronary heart disease, nonsteroidal anti-inflammatory, and myocardial infarction. The top 5 literature citation topics are chronic inflammatory diseases, cardiovascular risk; systematic review, statin therapy; high-density lipoprotein. In the past 2 years, the strongest keyword reference burst is “Nlrp3 inflammasome,” and the strongest citation burst is “Ridker PM, 2017 (95.12).”

Conclusion

This study analyzes the research hotspots, frontiers, and development trends of anti-inflammatory applications in CHD, which is of great significance for future studies.
Paraoxonase 1 and atherosclerosis
Authors: Durrington Paul N. , Bashir Bilal , Soran Handrean
Published: February 2023

Paraoxonase 1 (PON1), residing almost exclusively on HDL, was discovered because of its hydrolytic activity towards organophosphates. Subsequently, it was also found to hydrolyse a wide range of substrates, including lactones and lipid hydroperoxides. PON1 is critical for the capacity of HDL to protect LDL and outer cell membranes against harmful oxidative modification, but this activity depends on its location within the hydrophobic lipid domains of HDL. It does not prevent conjugated diene formation, but directs lipid peroxidation products derived from these to become harmless carboxylic acids rather than aldehydes which might adduct to apolipoprotein B. Serum PON1 is inversely related to the incidence of new atherosclerotic cardiovascular disease (ASCVD) events, particularly in diabetes and established ASCVD. Its serum activity is frequently discordant with that of HDL cholesterol. PON1 activity is diminished in dyslipidaemia, diabetes, and inflammatory disease. Polymorphisms, most notably Q192R, can affect activity towards some substrates, but not towards phenyl acetate. Gene ablation or over-expression of human PON1 in rodent models is associated with increased and decreased atherosclerosis susceptibility respectively. PON1 antioxidant activity is enhanced by apolipoprotein AI and lecithin:cholesterol acyl transferase and diminished by apolipoprotein AII, serum amyloid A, and myeloperoxidase. PON1 loses this activity when separated from its lipid environment. Information about its structure has been obtained from water soluble mutants created by directed evolution. Such recombinant PON1 may, however, lose the capacity to hydrolyse non-polar substrates. Whilst nutrition and pre-existing lipid modifying drugs can influence PON1 activity there is a cogent need for more specific PON1-raising medication to be developed.
The role of ROS-induced pyroptosis in CVD
Authors: Tian Kaijiang , Yang Yu , Zhou Kun , Deng Nianhua , Tian Zhen , Wu Zefan , Liu Xiyan , Zhang Fan , Jiang Zhisheng
Published: February 2023

Cardiovascular disease (CVD) is the number one cause of death in the world and seriously threatens human health. Pyroptosis is a new type of cell death discovered in recent years. Several studies have revealed that ROS-induced pyroptosis plays a key role in CVD. However, the signaling pathway ROS-induced pyroptosis has yet to be fully understood. This article reviews the specific mechanism of ROS-mediated pyroptosis in vascular endothelial cells, macrophages, and cardiomyocytes. Current evidence shows that ROS-mediated pyroptosis is a new target for the prevention and treatment of cardiovascular diseases such as atherosclerosis (AS), myocardial ischemia-reperfusion injury (MIRI), and heart failure (HF).
Randomized, crossover, controlled trial on the modulation of cardiac coronary sinus hemodynamics to develop a new treatment for microvascular disease: Protocol of the MACCUS trial
Authors: Ullrich Helen , Olschewski Maximilian , Münzel Thomas , Gori Tommaso
Published: February 2023

Background

Microvascular angina (MVA) is a frequent condition for which our understanding of the disease pathophysiology and therapeutic perspectives remain unsatisfactory. The current study is designed to test whether an improvement in microvascular resistances could be achieved by elevating backward pressure in the coronary venous system, based on the hypothesis that an increase in hydrostatic pressure could cause a dilatation of the myocardial arterioles, resulting in a reduction of vascular resistances. This approach might have potential clinical implications, as it might suggest that interventions aimed at increasing coronary sinus (CS) pressure might result in a decrease in angina in this subset of patients. The aim of our single-center, sham-controlled, crossover randomized trial is to investigate the effect of an acute increase in CS pressure on a number of parameters of coronary physiology, including parameters of coronary microvascular resistance and conductance.

Methods and analysis

A total of 20 consecutive patients with angina pectoris and coronary microvascular dysfunction (CMD) will be enrolled in the study. Hemodynamic parameters including aortic and distal coronary pressure, CS and right atrial pressure, and the coronary microvascular resistance index will be measured at rest and during hyperemia in a randomized crossover design during incomplete balloon occlusion (“balloon”) and with the deflated balloon in the right atrium (“sham”). The primary end point of the study is the change in index of microvascular resistances (IMR) after acute modulation of CS pressure, while key secondary end points include changes in the other parameters.

Discussion

The aim of the study is to investigate whether occlusion of the CS is associated with a decrease in IMR. The results will provide mechanistic evidence for the development of a treatment for patients with MVA.

Clinical trial registration

https://clinicaltrials.gov/, identifier NCT05034224.
Prognostic relevance of mitral and tricuspid regurgitation after transcatheter aortic valve implantation: Impact of follow-up time point for decision-making
Authors: Bäz Laura , Möbius-Winkler Sven , Diab Mahmoud , Kräplin Thomas , Westphal Julian G. , Ibrahim Karim , Schulze P. Christian , Franz Marcus
Published: February 2023

Background

In patients with aortic stenosis treated by transcatheter aortic valve implantation (TAVI), mitral and tricuspid regurgitation (MR and TR) at baseline and after TAVI are likely to be of prognostic relevance, and questions such as whether and when treatment further improves prognosis in these patients arise.

Aims

Against that background, the purpose of this study was to analyze a variety of clinical characteristics including MR and TR with respect to their potential value as predictors of 2-year mortality after TAVI.

Methods

A cohort of 445 typical TAVI patients was available for the study and clinical characteristics were evaluated baseline, 6 to 8 weeks as well as 6 months after TAVI.

Results

In 39% of the patients relevant (moderate or severe) MR and in 32% of the patients relevant (moderate or severe) TR could be detected at baseline. The rates were 27% for MR (p = 0.001, compared to baseline) and 35% for TR (p = n.s., compared to baseline) at the 6- to 8-week follow-up. After 6 months, relevant MR was observable in 28% (p = 0.036, compared to baseline) and relevant TR in 34% (p = n.s., compared to baseline) of the patients. As predictors of 2-year mortality, a multivariate analysis identified the following parameters for the different time points: sex, age, AS entity, atrial fibrillation, renal function, relevant TR, systolic pulmonary artery pressure (PAPsys), and 6-min walk distance at baseline; clinical frailty scale and PAPsys 6–8 weeks after TAVI and BNP and relevant MR 6 months after TAVI. There was a significantly worse 2-year survival in patients with relevant TR at baseline (68.4% vs. 82.6%, p < 0.001; whole population, n = 445) and in patients with relevant MR at 6 months (87.9% vs. 95.2%, p = 0.042; landmark analysis: n = 235).

Conclusion

This real-life study demonstrated the prognostic relevance of repeated evaluation of MR and TR before and after TAVI. Choosing the right time point for treatment is a remaining clinical challenge, which should be further addressed in randomized trials.
Simulation of hydraulic fracture initiation and propagation for glutenite formations based on discrete element method
Authors: Tan Peng , Chen Gang , Wang Qian , Zhao Qing , Chen Zhaowei , Xiang Degui , Xu Chaolan , Feng Xiao , Zhai Wenbao , Yang Zixuan , Shan Qinglin
Published: February 2023

The existence of gravels in the glutenite formations leads to the complex geometries of hydraulic fracturing propagation and difficult construction in fracturing engineering. To study the hydraulic fracturing propagation law of glutenite formations, this paper establishes a fracture propagation model for the heterogeneous glutenite formations based on discrete element method, and analyzes the effects of gravel content, particle size, distribution, horizontal stress difference, fracturing fluid viscosity and flow rate on hydraulic fracturing propagation behavior. Results show that the complex geometries of hydraulic fractures in glutenite formations can lead to the generation of branched fractures and fracture bifurcation. Small-sized gravels have little effect on the fracture propagation shape which leads to a single main fracture with a flat fracture surface, on the contrary, large-sized gravels may induce hydraulic fractures to deflect along the gravel interface and form branched fractures with distorted fracture surfaces. Hydraulic fractures can propagate around gravels under the condition of high stress difference, high viscosity and medium flow rate. Gravels can prevent the propagation of hydraulic fractures under low stress difference, low viscosity and small flow rate. Hydraulic fracture bifurcation can occur when encountering gravels under high stress difference and large displacement. Properly increasing the high viscosity of fracturing fluids can effectively promote the main hydraulic fracture propagation and reduce the fracture tortuosity, thereby avoiding sand up.
An insight into brown/beige adipose tissue whitening, a metabolic complication of obesity with the multifactorial origin
Authors: Ziqubu Khanyisani , Dludla Phiwayinkosi V. , Mthembu Sinenhlanhla X. H. , Nkambule Bongani B. , Mabhida Sihle E. , Jack Babalwa U. , Nyambuya Tawanda M. , Mazibuko-Mbeje Sithandiwe E.
Published: February 2023

Brown adipose tissue (BAT), a thermoregulatory organ known to promote energy expenditure, has been extensively studied as a potential avenue to combat obesity. Although BAT is the opposite of white adipose tissue (WAT) which is responsible for energy storage, BAT shares thermogenic capacity with beige adipose tissue that emerges from WAT depots. This is unsurprising as both BAT and beige adipose tissue display a huge difference from WAT in terms of their secretory profile and physiological role. In obesity, the content of BAT and beige adipose tissue declines as these tissues acquire the WAT characteristics via the process called “whitening”. This process has been rarely explored for its implication in obesity, whether it contributes to or exacerbates obesity. Emerging research has demonstrated that BAT/beige adipose tissue whitening is a sophisticated metabolic complication of obesity that is linked to multiple factors. The current review provides clarification on the influence of various factors such as diet, age, genetics, thermoneutrality, and chemical exposure on BAT/beige adipose tissue whitening. Moreover, the defects and mechanisms that underpin the whitening are described. Notably, the BAT/beige adipose tissue whitening can be marked by the accumulation of large unilocular lipid droplets, mitochondrial degeneration, and collapsed thermogenic capacity, by the virtue of mitochondrial dysfunction, devascularization, autophagy, and inflammation.
Advances and prospects of biochar in improving soil fertility, biochemical quality, and environmental applications
Authors: Nepal Jaya , Ahmad Wiqar , Munsif Fazal , Khan Aziz , Zou Zhiyou
Published: February 2023

With the global food deficit increasing and rising climate change issues, there is a need to find green solutions to improve soil fertility and productivity while enhancing soil biochemical quality and reducing the ecological impact of agriculture. Biochar is a potentially cost-effective, carbonaceous resource with many agricultural and environmental applications. As a soil amendment, it improves soil physical and biochemical properties and increases soil fertility and productivity—particularly over the long-term—increasing soil aggregation, water retention, pH, and microbial activities, thus, improving overall soil quality, potentially helping to reduce chemical fertilizer needs over time. The extent of biochar’s impact on soil physiochemical properties varies depending on biochar source, type, size, inherent soil characteristics, cropping system, etc. Moreover, biochar has significant potential in soil and water remediation, especially through its unique adsorption and chemical properties capable to capture and immobilize pollutants such as metal(loid)s, organic pollutants, and hazardous emerging contaminants such as microplastics. Further, biochar has also emerged as a key strategic, cost-effective material to tackle global issues such as climate change mitigation, reducing the net greenhouse gas emission to minimize global warming potential. However, a knowledge gap remains as to understanding the long-term persistence of biochar on agroecosystem, optimal biochar application rate for the diversity of biochar-soil-crop-environmental conditions, interaction of biochar with inherent soil carbon stock, specific mechanisms of biochar’s effect on soil biotic properties, quantification of carbon sequestration, greenhouse gas emissions, synergy or potential antagonistic effects with other carbon sources such as compost, manure, residues, etc., its modification for environmental applications and associated environmental and human risks over long-term. Further research is needed to evaluate the long-term impacts of types and sizes of biochar on overall soil quality to recommend suitable application practices based on soil management and cropping system. Also, its environmental applications need to be finetuned for wider and target specific applications to tackle pressing environmental issues such as soil and water pollution.
Efficacy of permanent wildlife fences as barriers to amphibian movement
Authors: Conan Antonin , Le Brishoual Meven , Garnier Lorène , Fleitz Julie , Dehaut Nathan , Enstipp Manfred , Jumeau Jonathan , Handrich Yves
Published: February 2023

To mitigate habitat fragmentation and roadkill, roads are increasingly equipped with wildlife fences and underpasses. However, the effectiveness of such fences in preventing road access for amphibians has not been tested under controlled conditions. In 2019 and 2020, we tested the efficacy of full panel fences of differing material, height, and shape (presence/absence of an overhang), to prevent road access for adult and juvenile amphibians. We selected five species according to locomotion mode: Natterjack toads (runners), European green toads (short-distance jumpers), agile frogs (proficient jumpers), American tree frogs (proficient climbers) and smooth newts (climbers). We found that Natterjack and green toads were unable to cross a concrete fence with a height of 13 and 24 cm, respectively. Addition of a 10 cm overhang reduced the height required to prevent crossing further to 10 and 17 cm, respectively. The ability of these less agile species to cross a certain fence height depended on body length. By contrast, jumping agile frogs and climbing tree frogs were not stopped by the greatest fence height tested (40 cm). However, addition of the overhang stopped the climbing tree frogs at a concrete fence height of 35 cm. An alternative metal fence (with overhang) was tested with some species and performed similar to the concrete fence (with overhang). Finally, the greatest concrete fence height passed by climbing juveniles was 20 cm (smooth newts). Hence, to stop amphibians from road crossing, we recommend the construction of durable (concrete or galvanized metal) and well-maintained fences with a minimum height of 40 cm with a 10 cm overhang.
Neutral and adaptive genetic diversity in plants: An overview
Authors: Chung Mi Yoon , Merilä Juha , Li Jialiang , Mao Kangshan , López-Pujol Jordi , Tsumura Yoshihiko , Chung Myong Gi
Published: February 2023

Genetic diversity is a prerequisite for evolutionary change in all kinds of organisms. It is generally acknowledged that populations lacking genetic variation are unable to evolve in response to new environmental conditions (e.g., climate change) and thus may face an increased risk of extinction. Although the importance of incorporating genetic diversity into the design of conservation measures is now well understood, less attention has been paid to the distinction between neutral (NGV) and adaptive (AGV) genetic variation. In this review, we first focus on the utility of NGV by examining the ways to quantify it, reviewing applications of NGV to infer ecological and evolutionary processes, and by exploring its utility in designing conservation measures for plant populations and species. Against this background, we then summarize the ways to identify and estimate AGV and discuss its potential use in plant conservation. After comparing NGV and AGV and considering their pros and cons in a conservation context, we conclude that there is an urgent need for a better understanding of AGV and its role in climate change adaptation. To date, however, there are only a few AGV studies on non-model plant species aimed at deciphering the genetic and genomic basis of complex trait variation. Therefore, conservation researchers and practitioners should keep utilizing NGV to develop relevant strategies for rare and endangered plant species until more estimates of AGV are available.
BRCA1 interactors, RAD50 and BRIP1, as prognostic markers for triple-negative breast cancer severity
Authors: Katheeja Muhseena N. , Das Shankar Prasad , Das Ranajit , Laha Suparna
Published: February 2023

Introduction: BRIP1 (BRCA1-interacting protein 1) is one of the major interacting partners of BRCA1, which plays an important role in repair by homologous recombination (HR). This gene is mutated in around 4% of cases of breast cancer; however, its mechanism of action is unclear. In this study, we presented the fundamental role of BRCA1 interactors BRIP1 and RAD50 in the development of differential severity in triple-negative breast cancer (TNBC) among various affected individuals.

Methods: We have analyzed the expression of DNA repair-related genes in different BC cells using Real-time PCR and western blotting analysis and assessed changes in stemness property and proliferation through Immunophenotyping. We have performed cell cycle analysis to see the defect in checkpoints and also immunofluorescence assay to confirm the accumulation of gamma-H2AX and BRCA1 foci and subsequent incidence. We have performed a severity analysis using TCGA data sets for comparing the expression in MDA-MB-468 MDA-MB-231 and MCF7 cell line.

Results: We showed that in some TNBC cell lines such as MDA-MB-231, the functioning of both BRCA1/TP53 is compromised. Furthermore, the sensing of DNA damage is affected. Due to less damage-sensing capability and low availability of BRCA1 at the damage sites, the repair by HR becomes inefficient, leading to more damage. Accumulation of damage sends a signal for over activation of NHEJ repair pathways. Over expressed NHEJ molecules with compromised HR and checkpoint conditions lead to higher proliferation and error-prone repair, which increases the mutation rate and corresponding tumour severity. The in-silico analysis of the TCGA datasets with gene expression in the deceased population showed a significant correlation of BRCA1 expression with overall survival (OS) in TNBCs (0.0272). The association of BRCA1 with OS became stronger with the addition of BRIP1 expression (0.000876**).

Conclusion: The severity phenotypes were more in cells having compromised BRCA1–BRIP1 functioning. Since the OS is directly proportional to the extent of severity, the data analysis hints at the role of BRIP1 in controlling the severity of TNBC.
Intelligent diagnosis value of preoperative T staging of colorectal cancer based on MR medical imaging
Authors: Wang Junqing , Chen Bingqian , Zhu Jing , Zhang Junfeng , Jiang Rui
Published: February 2023

Colorectal cancer is a common malignant tumor in clinic. With the change of people's diet, living environment and living habits, the incidence of colorectal cancer has risen sharply in recent years, which poses a great threat to people's health and quality of life. This paper aims to investigate the pathogenesis of colorectal cancer and improve the efficiency of clinical diagnosis and treatment. This paper firstly introduces MR Medical imaging technology and related theories of colorectal cancer through literature survey, and then applies MR technology to preoperative T staging of colorectal cancer. 150 patients with colorectal cancer admitted to our hospital every month from January 2019 to January 2020 were used as research objects to carry out the application experiment of MR Medical imaging in the intelligent diagnosis of preoperative T staging of colorectal cancer, and to explore the diagnostic sensitivity, specificity and histopathological T staging diagnosis coincidence rate of MR Staging. The final study results showed that there was no statistical significance in the general data of stage T1-2, T3 and T4 patients (p > 0.05); for patients with preoperative T stage of colorectal cancer, the overall diagnosis coincidence rate of MR Was 89.73%, indicating that it was highly consistent with pathological T stage; compared with MR Staging, the overall diagnosis coincidence rate of CT for preoperative T staging of colorectal cancer patients was 86.73%, which was basically consistent with the diagnosis of pathological T staging. At the same time, three different dictionary learning depth techniques are proposed in this study to solve the shortcomings of long MR Scanning time and slow imaging speed. Through performance testing and comparison, it is found that the structural similarity of MR Image reconstructed by depth dictionary method based on convolutional neural network is up to 99.67%, higher than that of analytic dictionary and synthetic dictionary, which proves that it has the best optimization effect on MR Technology. The study indicated the importance of MR Medical imaging in preoperative T staging diagnosis of colorectal cancer and the necessity of its popularization.
Urban green management plan: Guidelines for European cities
Authors: Battisti Luca , Larcher Federica , Devecchi Marco
Published: February 2023

Urban green areas are essential components of a city. They guarantee an adequate quality of life by providing several ecosystem services. Green areas must be designed and managed appropriately with a long-term approach ensuring a healthy urban ecosystem. It is possible to observe how especially in the USA and Canada there is a useful tool for this purpose, the Urban Forest Management Plan. The aim of this study is to understand which practical and effective plans were available for manage public urban green spaces in Europe, before COVID-19 (non-routine period), in order to carefully set up management plans. In order to reach the goal a bibliographic review was performed and reported following the PRISMA Statement. Furthermore, a research was carried out on the main management plans adopted by the municipalities in European capitals. In this regard, the research tries to investigate the knowledge base that European municipalities can use to set up an urban green management plan. The narration of the outcomes was designed as an initial guide aimed primarily at public administrators by providing them with a path and a scheme on how to structure a long-term green management plan in European cities. In the hope that even European municipalities can adopt a long-term green management plan, we propose a scheme to be followed to achieve this goal, with the indication of five essential points to be taken into account.
T-cells engineered with a novel VHH-based chimeric antigen receptor against CD19 exhibit comparable tumoricidal efficacy to their FMC63-based counterparts
Authors: Nasiri Fatemeh , Safarzadeh Kozani Pooria , Rahbarizadeh Fatemeh
Published: February 2023

Background

Chimeric antigen receptor (CAR)-T cell therapy has established itself as a potent therapeutic option for certain patients with relapsed/refractory (R/R) hematologic malignancies. To date, four CD19-redirected CAR-T cell products have been granted the United States Food and Drug Administration (FDA) approval for medical use. However, all of these products are equipped with a single-chain fragment variable (scFv) as their targeting domains. Camelid single-domain antibodies (VHH or nanobody) can also be used as alternatives to scFvs. In this study, we developed VHH-based CD19-redirected CAR-Ts, and compared them with their FMC63 scFv-based counterpart.

Methods

Human primary T cells were transduced to express a second-generation 4-1BB-CD3ζ-based CAR construct whose targeting domain was based on a CD19-specific VHH. The expansion rate, cytotoxicity, and secretion of proinflammatory cytokines (IFN-γ, IL-2, and TNF-α) of the developed CAR-Ts were assessed and compared with their FMC63 scFv-based counterpart as they were co-cultured with CD19-positive (Raji and Ramos) and CD19-negative (K562) cell lines.

Results

VHH-CAR-Ts showed an expansion rate comparable to that of the scFv-CAR-Ts. In terms of cytotoxicity, VHH-CAR-Ts mediated cytolytic reactions against CD19-positive cell lines, comparable to those of their scFv-based counterparts. Moreover, both VHH-CAR-Ts and scFv-CAR-Ts secreted remarkably higher and similar levels of IFN-γ, IL-2, and TNF-α upon co-cultivation with Ramos and Raji cell lines compared with while cultured alone or co-cultured with K562 cells.

Conclusion

Our results demonstrated that our VHH-CAR-Ts could mediate CD19-dependent tumoricidal reactions as potently as their scFv-based counterparts. Moreover, VHHs could be applied as the targeting domains of CAR constructs to overcome the issues associated with the use of scFvs in CAR-T therapies.
Feeding ecology of Benthosema glaciale across the North Atlantic
Authors: Knutsen Tor , Strand Espen , Klevjer Thor A. , Salvanes Anne Gro Vea , Broms Cecilie , Sunde Synne Myhre , Aksnes Dag Lorents , García-Seoane Eva , Melle Webjørn
Published: February 2023

The glacier lanternfish Benthosema glaciale is a key myctophid with a wide distribution in the northern Atlantic. It is a species that has a strong vertical migration capacity and have the potential to move between the surface waters and mesopelagic depths in a diel cycle (DVM), mainly depending on ambient light conditions. We investigated the feeding ecology of B. glaciale across the Norwegian, Iceland, Irminger and Labrador Sea basins. An important component of Benthosema diet was various types of calanoid copepods, but with some additional variability across the deep basins. ‘House’s’ of Appendicularia were only found in stomachs from the Labrador basin and were positively selected for here. The large calanoid Calanus hyperboreus was strongly selected for in the Iceland Sea, while its smaller counterpart C. finmarchicus was negatively selected for here. Fish from the Irminger, Labrador and Norwegian Seas displayed a high number of empty stomachs while no fish stomachs were found empty in the Iceland Sea. Contrary to expectation due to being located at the highest latitude, Benthosema in the Iceland Sea had significantly higher condition factor (for both small and large fish) and liver indices compared to fish from other basins, but the abundance of small fish in the sampled population here was very low. This contrasts with the “light environment exclusion” (LEE) hypothesis, which propose that the extreme light environment at higher latitudes restricts feeding opportunities for mesopelagic fish at high latitudes. It is suggested that improved classification of prey through stomach analyses should aim to allow bioluminescent organisms to be separated from non-bioluminescent prey if feasible. This would allow improved resolution to analyse stomach contents and certainly progress our understanding of the success of myctophids across variable habitats.
The relationship between atopic dermatitis and atopic itch in children and the psychosocial functioning of their mothers: A cross-sectional study
Authors: Kobusiewicz Aleksandra K. , Tarkowski Bartlomiej , Kaszuba Andrzej , Lesiak Aleksandra , Narbutt Joanna , Zalewska-Janowska Anna
Published: February 2023

Atopic dermatitis is a chronic inflammatory skin disease significantly affecting patients’ and their parents’ lives. Mothers are mostly responsible for the long-term treatment and their wellbeing is essential. The major objective of this cross-sectional study was to investigate the relationship between atopic dermatitis in children, especially concomitant itch, and the quality of life, stress, sleep quality, anxiety, and depression of their mothers. The study included 88 mothers of children with atopic dermatitis and 52 mothers of children without atopic dermatitis. All mothers completed sociodemographic questionnaire, the Perceived Stress Scale, the Athens Insomnia Scale and the Hospital Anxiety and Depression Scale. Additionally, mothers of children with atopic dermatitis filled in the Family Dermatology Life Quality Index. The severity of atopic dermatitis and pruritus intensity were evaluated by the Scoring Atopic Dermatitis Index and the Numerical Rating Scale, respectively. The severity of atopic dermatitis and itch significantly correlated with the quality of life, insomnia, and perceived stress of the mothers. Mothers whose children had had atopic dermatitis for more than 6 months had significantly higher scores of anxiety and depression. The results highlight the importance of screening mothers for functional impairment to provide adequate support. More attention should be directed to the standardization of stepped care interventions addressing factors resulting in the impaired functioning of mothers.
Lichen sclerosus: The 2023 update
Authors: De Luca David A. , Papara Cristian , Vorobyev Artem , Staiger Hernán , Bieber Katja , Thaçi Diamant , Ludwig Ralf J.
Published: February 2023

Lichen sclerosus (LS) is an underdiagnosed inflammatory mucocutaneous condition affecting the anogenital areas. Postmenopausal women are predominantly affected and, to a lesser extent, men, prepubertal children, and adolescents. The etiology of LS is still unknown. Hormonal status, frequent trauma and autoimmune diseases are well-known associations for LS, yet infections do not seem to be clear risk factors. LS pathogenesis involves factors such as a genetic predisposition and an immune-mediated Th1-specific IFNγ-induced phenotype. Furthermore, there is a distinct expression of tissue remodeling associated genes as well as microRNAs. Oxidative stress with lipid and DNA peroxidation provides an enabling microenvironment to autoimmunity and carcinogenesis. Circulating IgG autoantibodies against the extracellular matrix protein 1 and hemidesmosome may contribute to the progression of LS or simply represent an epiphenomenon. The typical clinical picture includes chronic whitish atrophic patches along with itching and soreness in the vulvar, perianal and penile regions. In addition to genital scarring, and sexual and urinary dysfunction, LS may also lead to squamous cell carcinoma. Disseminated extragenital LS and oral LS are also reported. The diagnosis is usually clinical; however, a skin biopsy should be performed in case of an unclear clinical picture, treatment failure or suspicion of a neoplasm. The gold-standard therapy is the long-term application of ultrapotent or potent topical corticosteroids and, alternatively, topical calcineurin inhibitors such as pimecrolimus or tacrolimus. Collectively, LS is a common dermatological disease with a so far incompletely understood pathogenesis and only limited treatment options. To foster translational research in LS, we provide here an update on its clinical features, pathogenesis, diagnosis and (emerging) treatment options.
GrlR, a negative regulator in enteropathogenic E. coli, also represses the expression of LEE virulence genes independently of its interaction with its cognate partner GrlA
Authors: Lara-Ochoa Cristina , Huerta-Saquero Alejandro , Medrano-López Abraham , Deng Wanyin , Finlay B. Brett , Martínez-Laguna Ygnacio , Puente José L.
Published: February 2023

Introduction

Enteropathogenic Escherichia coli (EPEC), enterohemorrhagic E. coli (EHEC) and Citrobacter rodentium (CR) belong to a group of pathogens that share the ability to form “attaching and effacing” (A/E) lesions on the intestinal epithelia. A pathogenicity island known as the locus of enterocyte effacement (LEE) contains the genes required for A/E lesion formation. The specific regulation of LEE genes relies on three LEE-encoded regulators: Ler activates the expression of the LEE operons by antagonizing the silencing effect mediated by the global regulator H-NS, GrlA activates ler expression and GrlR represses the expression of the LEE by interacting with GrlA. However, despite the existing knowledge of LEE regulation, the interplay between GrlR and GrlA and their independent roles in gene regulation in A/E pathogens are still not fully understood.

Methods

To further explore the role that GrlR and GrlA in the regulation of the LEE, we used different EPEC regulatory mutants and cat transcriptional fusions, and performed protein secretion and expression assays, western blotting and native polyacrylamide gel electrophoresis.

Results and discussion

We showed that the transcriptional activity of LEE operons increased under LEE-repressing growth conditions in the absence of GrlR. Interestingly, GrlR overexpression exerted a strong repression effect over LEE genes in wild-type EPEC and, unexpectedly, even in the absence of H-NS, suggesting that GrlR plays an alternative repressor role. Moreover, GrlR repressed the expression of LEE promoters in a non-EPEC background. Experiments with single and double mutants showed that GrlR and H-NS negatively regulate the expression of LEE operons at two cooperative yet independent levels. In addition to the notion that GrlR acts as a repressor by inactivating GrlA through protein-protein interactions, here we showed that a DNA-binding defective GrlA mutant that still interacts with GrlR prevented GrlR-mediated repression, suggesting that GrlA has a dual role as a positive regulator by antagonizing GrlR’s alternative repressor role. In line with the importance of the GrlR-GrlA complex in modulating LEE gene expression, we showed that GrlR and GrlA are expressed and interact under both inducing and repressing conditions. Further studies will be required to determine whether the GrlR alternative repressor function depends on its interaction with DNA, RNA, or another protein. These findings provide insight into an alternative regulatory pathway that GrlR employs to function as a negative regulator of LEE genes.
Evaluation of efficacy and mechanism of Bacillus velezensis CB13 for controlling peanut stem rot caused by Sclerotium rolfsii
Authors: Jia Shu , Song Ce , Dong Hai , Yang Xujie , Li Xinghai , Ji Mingshan , Chu Jin
Published: February 2023

Peanut stem rot, caused by Sclerotium rolfsii, considerably affects crop productivity. Application of chemical fungicides harms the environment and induces drug resistance. Biological agents are valid and eco-friendly alternatives to chemical fungicides. Bacillus spp. are important biocontrol agents that are now widely used against several plant diseases. This study aimed to evaluate the efficacy and mechanism of a potential biocontrol agent Bacillus sp. for controlling peanut stem rot caused by S. rolfsii. Here, we isolated a strain of Bacillus from pig biogas slurry that considerably inhibits the radial growth of S. rolfsii. The strain CB13 was identified as Bacillus velezensis on the basis of morphological, physiological, biochemical characteristics and phylogenetic trees based on the 16S rDNA and gyrA, gyrB, and rpoB gene sequences. The biocontrol efficacy of CB13 was evaluated on the basis of colonization ability, induction of defense enzyme activity, and soil microbial diversity. The control efficiencies of B. velezensis CB13-impregnated seeds in four pot experiments were 65.44, 73.33, 85.13, and 94.92%. Root colonization was confirmed through green fluorescent protein (GFP)-tagging experiments. The CB13-GFP strain was detected in peanut root and rhizosphere soil, at 104 and 108 CFU/g, respectively, after 50 days. Furthermore, B. velezensis CB13 enhanced the defense response against S. rolfsii infection by inducing defense enzyme activity. MiSeq sequencing revealed a shift in the rhizosphere bacterial and fungal communities in peanuts treated with B. velezensis CB13. Specifically, the treatment enhanced disease resistance by increasing the diversity of soil bacterial communities in peanut roots, increasing the abundance of beneficial communities, and promoting soil fertility. Additionally, real-time quantitative polymerase chain reaction results showed that B. velezensis CB13 stably colonized or increased the content of Bacillus spp. in the soil and effectively inhibited S. rolfsii proliferation in soil. These findings indicate that B. velezensis CB13 is a promising agent for the biocontrol of peanut stem rot.
Dynamic distribution of gut microbiota in cattle at different breeds and health states
Authors: Wang Lei , Wu Daoyi , Zhang Yu , Li Kun , Wang Mingjin , Ma Jinping
Published: February 2023

Weining cattle is a precious species with high tolerance to cold, disease, and stress, and accounts for a large proportion of agricultural economic output in Guizhou, China. However, there are gaps in information about the intestinal flora of Weining cattle. In this study, high-throughput sequencing were employed to analyze the intestinal flora of Weining cattle (WN), Angus cattle (An), and diarrheal Angus cattle (DA), and explore the potential bacteria associated with diarrhea. We collected 18 fecal samples from Weining, Guizhou, including Weining cattle, Healthy Angus, and Diarrheal Angus. The results of intestinal microbiota analysis showed there were no significant differences in intestinal flora diversity and richness among groups (p > 0.05). The abundance of beneficial bacteria (Lachnospiraceae, Rikenellaceae, Coprostanoligenes, and Cyanobacteria) in Weining cattle were significantly higher than in Angus cattle (p < 0.05). The potential pathogens including Anaerosporobacter and Campylobacteria were enriched in the DA group. Furthermore, the abundance of Lachnospiraceae was very high in the WN group (p < 0.05), which might explain why Weining cattle are less prone to diarrhea. This is the first report on the intestinal flora of Weining cattle, furthering understanding of the relationship between intestinal flora and health.
The rotation of primary starter culture mixtures results in batch-to-batch variations during Gouda cheese production
Authors: Decadt Hannes , Weckx Stefan , De Vuyst Luc
Published: February 2023

Industrial production of Gouda cheeses mostly relies on a rotated use of different mixed-strain lactic acid bacteria starter cultures to avoid phage infections. However, it is unknown how the application of these different starter culture mixtures affect the organoleptic properties of the final cheeses. Therefore, the present study assessed the impact of three different starter culture mixtures on the batch-to-batch variations among Gouda cheeses from 23 different batch productions in the same dairy company. Both the cores and rinds of all these cheeses were investigated after 36, 45, 75, and 100 weeks of ripening by metagenetics based on high-throughput full-length 16S rRNA gene sequencing accompanied with an amplicon sequence variant (ASV) approach as well as metabolite target analysis of non-volatile and volatile organic compounds. Up to 75 weeks of ripening, the acidifying Lactococcus cremoris and Lactococcus lactis were the most abundant bacterial species in the cheese cores. The relative abundance of Leuconostoc pseudomesenteroides was significantly different for each starter culture mixture. This impacted the concentrations of some key metabolites, such as acetoin produced from citrate, and the relative abundance of non-starter lactic acid bacteria (NSLAB). Cheeses with the least Leuc. pseudomesenteroides contained more NSLAB, such as Lacticaseibacillus paracasei that was taken over by Tetragenococcus halophilus and Loigolactobacillus rennini upon ripening time. Taken together, the results indicated a minor role of leuconostocs in aroma formation but a major impact on the growth of NSLAB. The relative abundance of T. halophilus (high) and Loil. rennini (low) increased with ripening time from rind to core. Two main ASV clusters of T. halophilus could be distinguished, which were differently correlated with some metabolites, both beneficial (regarding aroma formation) and undesirable ones (biogenic amines). A well-chosen T. halophilus strain could be a candidate adjunct culture for Gouda cheese production.
Strategies to overcome HIV drug resistance-current and future perspectives
Authors: Temereanca Aura , Ruta Simona
Published: February 2023

The availability of combined antiretroviral therapy (cART) has revolutionized the course of HIV infection, suppressing HIV viremia, restoring the immune system, and improving the quality of life of HIV infected patients. However, the emergence of drug resistant and multidrug resistant strains remains an important contributor to cART failure, associated with a higher risk of HIV-disease progression and mortality. According to the latest WHO HIV Drug Resistance Report, the prevalence of acquired and transmitted HIV drug resistance in ART naive individuals has exponentially increased in the recent years, being an important obstacle in ending HIV-1 epidemic as a public health threat by 2030. The prevalence of three and four-class resistance is estimated to range from 5 to 10% in Europe and less than 3% in North America. The new drug development strategies are focused on improved safety and resistance profile within the existing antiretroviral classes, discovery of drugs with novel mechanisms of action (e.g., attachment/post-attachment inhibitors, capsid inhibitors, maturation inhibitors, nucleoside reverse transcriptase translocation inhibitors), combination therapies with improved adherence, and treatment simplification with infrequent dosing. This review highlight the current progress in the management of salvage therapy for patients with multidrug-resistant HIV-1 infection, discussing the recently approved and under development antiretroviral agents, as well as the new drug targets that are providing a new avenue for the development of therapeutic interventions in HIV infection.
Cerebral white matter lesions and regional blood flow are associated with reduced cognitive function in early-stage cognitive impairment
Authors: Kuroda Takeshi , Ono Kenjiro , Honma Motoyasu , Asano Miki , Mori Yukiko , Futamura Akinori , Yano Satoshi , Kanemoto Mizuki , Hieda Sotaro , Baba Yasuhiko , Izumizaki Masahiko , Murakami Hidetomo
Published: February 2023

Background

Differences in the extent of cerebral white matter lesions (WML) and regional cerebral blood flow (rCBF) in early-stage cognitive impairment (ESCI) contribute to the prognosis of cognitive decline; however, it is unclear precisely how WML and rCBF affect cognitive decline in ESCI.

Objective

We examined the association between WML, rCBF, and cognitive impairment in the ESCI, using path analysis to clarify how these variables affect each other.

Methods

Eighty-three patients who consulted our memory clinic regarding memory loss were included in this study based on the Clinical Dementia Rating. Participants underwent the Mini-Mental State Examination (MMSE), brain magnetic resonance imaging (MRI) for voxel-based morphometry analysis, and brain perfusion single-photon emission computed tomography (SPECT) for rCBF evaluation in cortical regions, using 3D stereotactic surface projection (3D-SSP) analysis.

Results

Path analysis was performed on the MRI voxel-based morphometry and SPECT 3D-SSP data, showing a significant correlation between both and MMSE scores. In the most suitable model (GFI = 0.957), correlations were observed between lateral ventricular (LV-V) and periventricular WML (PvWML-V) volumes [standardized coefficient (SC) = 0.326, p = 0.005], LV-V and rCBF of the anterior cingulate gyrus (ACG-rCBF; SC = 0.395, p < 0.0001), and ACG-rCBF and PvWML-V (SC = 0.231, p = 0.041). Furthermore, a direct relationship between PvWML-V and MMSE scores was identified (SC = −0.238, p = 0.026).

Conclusion

Significant interrelationships were observed among the LV-V, PvWML-V, and ACG-rCBF that directly affected the MMSE score in the ESCI. The mechanisms behind these interactions and the impact of PvWML-V on cognitive function require further investigation.
Efficient three-dimensional point cloud object detection based on improved Complex-YOLO
Authors: Shao Yongxin , Sun Zhetao , Tan Aihong , Yan Tianhong
Published: February 2023

Lidar-based 3D object detection and classification is a critical task for autonomous driving. However, inferencing from exceedingly sparse 3D data in real-time is a formidable challenge. Complex-YOLO solves the problem of point cloud disorder and sparsity by projecting it onto the bird’s-eye view and realizes real-time 3D object detection based on LiDAR. However, Complex-YOLO has no object height detection, a shallow network depth, and poor small-size object detection accuracy. To address these issues, this paper has made the following improvements: (1) adds a multi-scale feature fusion network to improve the algorithm’s capability to detect small-size objects; (2) uses a more advanced RepVGG as the backbone network to improve network depth and overall detection performance; and (3) adds an effective height detector to the network to improve the height detection. Through experiments, we found that our algorithm’s accuracy achieved good performance on the KITTI dataset, while the detection speed and memory usage were very superior, 48FPS on RTX3070Ti and 20FPS on GTX1060, with a memory usage of 841Mib.