Data Driven Research through the European RADeep Registry and the Use of Artificial Intelligence Towards Personalized Medicine in Sickle Cell Disease
Authors: Collado Gimbert Anna , Reidel Sara , Alonso de Apellániz Patricia , Alvarez Federico , Arroyo Galende Borja , Beneitez David , Biemond Bart J. , Boaro Maria Paola , Cajiao Garcia Betzabel , Castellani Gastone , Cela Elena , Cnossen Marjon H. , Fariselli Piero , Fijnvandraat Karin , Gulbis Béatrice , Idrizovic Amira , Kountouris Petros , Malcor Deydier De Pierrefeu Vincent , Manceau Sandra , Mezzalira Elisabetta , Nur Erfan , Orphanou Kalia , Parras Juan , Payán-Pernía Salvador , Pham Hung D'Alexandry D'Orengiani Anne-Laure , Rab Minke A.E. , Reggiani Giulia , Rijneveld Anita W. , Rollo Cesare , Ruiz Llobet Anna , Sanavia Tiziana , Schols Saskia EM , Tamana Stella , Traets Marissa J.M. , Uribe Silvia , van der Veen Sigrid , Zazo Santiago , Bartolucci Pablo , De Montalembert Mariane , Colombatti Raffaella , Van Beers Eduard J. , Mañú-Pereira Maria del Mar 
Published: December 2024

Background:

Sickle cell disease (SCD) is a life-threatening genetic inherited disease considered rare in the European Union (EU). Its complex mechanisms lead to highly variable clinical expression, encompassing in a majority of patients severe acute events and progressive organ damage with premature death. The lack of large datasets combining standardized clinical and research data in real settings hampers the identification of reliable biomarkers and endpoints to monitor disease progression, assess safety and efficacy of new therapies and regulatory decision making.

The RADeep, Rare Anemia Disorders European Epidemiological Platform, aims to collect large amount of highly standardized clinical data to enable data driven outcome research through the linkage of real-world data (RWD) repositories across EU.

Artificial Intelligence (AI) based models for SCD progression, severity classification, response to treatments and generation of synthetic data are being developed through Genomics and Personalized Medicine for all (GenoMed4All) and Synthetic Generation of Haematological Data Over Federated Computing Frameworks (SYNTHEMA) EU-funded projects.

Methodology:

The first large EU SCD dataset includes clinical (n=100), laboratory (n=65) and research data i.e. GWAS, tNGS, metabolomics and rheology from 5 repositories (France (2), Italy, Spain and The Netherlands); all data has been generated through standardized methodologies. To ensure relevance, coherence, timeliness, completeness, coverage and reliability of the minimal dataset for the development of the AI models, a data management and quality analysis plan were applied at data source and centrally. Descriptive analysis of a) hemolysis related parameters b) hydroxyurea uptake and c) number of vaso-occlusive events (VOE) have been performed dis-aggregated by age ranges 0-11yo and ≥12yo, beta and alpha globin genotypes and sex.

Results:

Standardized data on 1,150 SCD patients has been gathered through RADeep. The cohort is representative of all age groups: 0-11yo=29.5%, 12-17yo=17.8%, 18-54yo=45.6% and ≥55yo =7.1%. Sex at birth distribution is balanced (F=53.4%) except for ≥55yo (F=73.2%). SCD subdiagnosis resulted on 864 SS (75%), 151 SC (13%), 113 Sbeta (9.8%), 17 SOtherHb (1.5%) and 5 S-HPFH (0.4%). Beta and alpha globin genotypes are collected in 97% and 87% of the patients respectively (missing data is being generated). Discrepancies between SCD subdiagnosis and beta globin genotype reported data, initially found in 6.1% of the records, were solved after data source verification. Proportions of one alpha and two alpha deletions were 21 and 3.5%, respectively.

Dis-aggregated descriptive analysis showed higher hydroxyurea uptake rates and Hb concentration levels across all genotypes and age groups than previously reported. Age group 0-11yo: SS=HU89.4%, Hb9.0g/dL; SC=HU20%,Hb11g/dL; Sbeta0=HU84.6%,Hb10g/dL and Sbeta+=HU11.1%,Hb10.4g/dL. Age group ≥12yo: SS=HU80.5%,Hb9.0g/dL; SC=HU22.6%, Hb11.5g/dL; Sbeta0=HU78.9%,Hb9.9g/dL and Sbeta+=HU35.7%,Hb11.3g/dL.

The proportion of patients aged 0-11yo with at least 1 VOE in the last 2 years was SS =25%, SC=20%, Sbeta0=15.4% and Sbeta+=0%. For patients ≥12yo SS =46%, SC=33%, Sbeta0=28.9% and Sbeta+=21.4%. Interestingly SC genotype in &lt;12yo showed similar frequencies as SS while in ≥12yo was markedly lower.

SS male patients ≥12yo presented with higher values of total Hb if α-/α- or αα/α- was associated whereas this difference was not evident in the female group.

Conclusions

Standardization and quality assurance of RWD from multiple cross border data sources is a crucial step to advance data driven clinical research and improved care pathways in SCD; RADeep EpiData reported 26,892 patients with SCD in regular follow-up from 324 clinical sites in 12 EU countries.

The RADeep SCD dataset will enable to validate hypothesis on clinical outcome research and open the door for personalized medicine in SCD through the development of AI models for recurrent VOEs, acute chest syndrome and cerebral silent infarct. Resulting models can be validated in clinical settings at data providers contributing to the RADeep, currently 87 medical centres in 8 EU countries, that have collected standardized clinical data for 3,000 SCD patients in 2024. RADeep is currently working to get datasets qualified by EMA for regulatory purposes and to integrate patient self-reported outcomes in SCD.