bluuebunny/crossref_metadata_2025 huggingface dataset:
Supplementary Table S8 from Cross-Species Single-Cell Analysis of Pancreatic Ductal Adenocarcinoma Reveals Antigen-Presenting Cancer-Associated Fibroblasts
Authors: Elyada Ela , Bolisetty Mohan , Laise Pasquale , Flynn William F. , Courtois Elise T. , Burkhart Richard A. , Teinor Jonathan A. , Belleau Pascal , Biffi Giulia , Lucito Matthew S. , Sivajothi Santhosh , Armstrong Todd D. , Engle Dannielle D. , Yu Kenneth H. , Hao Yuan , Wolfgang Christopher L. , Park Youngkyu , Preall Jonathan , Jaffee Elizabeth M. , Califano Andrea , Robson Paul , Tuveson David A.
Published: April 2023

Supplementary Table S8 shows marker genes of the different human myeloid cell sub-clusters
Supplementary Table S4 from Cross-Species Single-Cell Analysis of Pancreatic Ductal Adenocarcinoma Reveals Antigen-Presenting Cancer-Associated Fibroblasts
Authors: Elyada Ela , Bolisetty Mohan , Laise Pasquale , Flynn William F. , Courtois Elise T. , Burkhart Richard A. , Teinor Jonathan A. , Belleau Pascal , Biffi Giulia , Lucito Matthew S. , Sivajothi Santhosh , Armstrong Todd D. , Engle Dannielle D. , Yu Kenneth H. , Hao Yuan , Wolfgang Christopher L. , Park Youngkyu , Preall Jonathan , Jaffee Elizabeth M. , Califano Andrea , Robson Paul , Tuveson David A.
Published: April 2023

Supplementary Table S4 shows marker genes of the different clusters in human PDAC scRNAseq
Supplementary Table S2 from Impact of HER2 Heterogeneity on Treatment Response of Early-Stage HER2-Positive Breast Cancer: Phase II Neoadjuvant Clinical Trial of T-DM1 Combined with Pertuzumab
Authors: Filho Otto Metzger , Viale Giuseppe , Stein Shayna , Trippa Lorenzo , Yardley Denise A. , Mayer Ingrid A. , Abramson Vandana G. , Arteaga Carlos L. , Spring Laura M. , Waks Adrienne G. , Wrabel Eileen , DeMeo Michelle K. , Bardia Aditya , Dell'Orto Patrizia , Russo Leila , King Tari A. , Polyak Kornelia , Michor Franziska , Winer Eric P. , Krop Ian E.
Published: April 2023

FISH raw counts
Figure S6 from SWI/SNF Complex Mutations Promote Thyroid Tumor Progression and Insensitivity to Redifferentiation Therapies
Authors: Saqcena Mahesh , Leandro-Garcia Luis Javier , Maag Jesper L.V. , Tchekmedyian Vatche , Krishnamoorthy Gnana P. , Tamarapu Prasanna P. , Tiedje Vera , Reuter Vincent , Knauf Jeffrey A. , de Stanchina Elisa , Xu Bin , Liao Xiao-Hui , Refetoff Samuel , Ghossein Ronald , Chi Ping , Ho Alan L. , Koche Richard P. , Fagin James A.
Published: April 2023

Effects of BrafV600E on thyroid differentiation.
Supplementary Table S5 from Intrinsic Immunogenicity of Small Cell Lung Carcinoma Revealed by Its Cellular Plasticity
Authors: Mahadevan Navin R. , Knelson Erik H. , Wolff Jacquelyn O. , Vajdi Amir , Saigí Maria , Campisi Marco , Hong Deli , Thai Tran C. , Piel Brandon , Han Saemi , Reinhold Bruce B. , Duke-Cohan Jonathan S. , Poitras Michael J. , Taus Luke J. , Lizotte Patrick H. , Portell Andrew , Quadros Victor , Santucci Alison D. , Murayama Takahiko , Cañadas Israel , Kitajima Shunsuke , Akitsu Aoi , Fridrikh Maya , Watanabe Hideo , Reardon Brendan , Gokhale Prafulla C. , Paweletz Cloud P. , Awad Mark M. , Van Allen Eliezer M. , Lako Ana , Wang Xi-Tao , Chen Benjamin , Hong Fangxin , Sholl Lynette M. , Tolstorukov Michael Y. , Pfaff Kathleen , Jänne Pasi A. , Gjini Evisa , Edwards Robin , Rodig Scott , Reinherz Ellis L. , Oser Matthew G. , Barbie David A.
Published: April 2023

Supplementary Table S5
Supplementary Table S3 from Intrinsic Immunogenicity of Small Cell Lung Carcinoma Revealed by Its Cellular Plasticity
Authors: Mahadevan Navin R. , Knelson Erik H. , Wolff Jacquelyn O. , Vajdi Amir , Saigí Maria , Campisi Marco , Hong Deli , Thai Tran C. , Piel Brandon , Han Saemi , Reinhold Bruce B. , Duke-Cohan Jonathan S. , Poitras Michael J. , Taus Luke J. , Lizotte Patrick H. , Portell Andrew , Quadros Victor , Santucci Alison D. , Murayama Takahiko , Cañadas Israel , Kitajima Shunsuke , Akitsu Aoi , Fridrikh Maya , Watanabe Hideo , Reardon Brendan , Gokhale Prafulla C. , Paweletz Cloud P. , Awad Mark M. , Van Allen Eliezer M. , Lako Ana , Wang Xi-Tao , Chen Benjamin , Hong Fangxin , Sholl Lynette M. , Tolstorukov Michael Y. , Pfaff Kathleen , Jänne Pasi A. , Gjini Evisa , Edwards Robin , Rodig Scott , Reinherz Ellis L. , Oser Matthew G. , Barbie David A.
Published: April 2023

Supplementary Table S3
Supplementary Table S2 from Intrinsic Immunogenicity of Small Cell Lung Carcinoma Revealed by Its Cellular Plasticity
Authors: Mahadevan Navin R. , Knelson Erik H. , Wolff Jacquelyn O. , Vajdi Amir , Saigí Maria , Campisi Marco , Hong Deli , Thai Tran C. , Piel Brandon , Han Saemi , Reinhold Bruce B. , Duke-Cohan Jonathan S. , Poitras Michael J. , Taus Luke J. , Lizotte Patrick H. , Portell Andrew , Quadros Victor , Santucci Alison D. , Murayama Takahiko , Cañadas Israel , Kitajima Shunsuke , Akitsu Aoi , Fridrikh Maya , Watanabe Hideo , Reardon Brendan , Gokhale Prafulla C. , Paweletz Cloud P. , Awad Mark M. , Van Allen Eliezer M. , Lako Ana , Wang Xi-Tao , Chen Benjamin , Hong Fangxin , Sholl Lynette M. , Tolstorukov Michael Y. , Pfaff Kathleen , Jänne Pasi A. , Gjini Evisa , Edwards Robin , Rodig Scott , Reinherz Ellis L. , Oser Matthew G. , Barbie David A.
Published: April 2023

Supplementary Table S2
Supplementary Figures 1-12 from Intrinsic Immunogenicity of Small Cell Lung Carcinoma Revealed by Its Cellular Plasticity
Authors: Mahadevan Navin R. , Knelson Erik H. , Wolff Jacquelyn O. , Vajdi Amir , Saigí Maria , Campisi Marco , Hong Deli , Thai Tran C. , Piel Brandon , Han Saemi , Reinhold Bruce B. , Duke-Cohan Jonathan S. , Poitras Michael J. , Taus Luke J. , Lizotte Patrick H. , Portell Andrew , Quadros Victor , Santucci Alison D. , Murayama Takahiko , Cañadas Israel , Kitajima Shunsuke , Akitsu Aoi , Fridrikh Maya , Watanabe Hideo , Reardon Brendan , Gokhale Prafulla C. , Paweletz Cloud P. , Awad Mark M. , Van Allen Eliezer M. , Lako Ana , Wang Xi-Tao , Chen Benjamin , Hong Fangxin , Sholl Lynette M. , Tolstorukov Michael Y. , Pfaff Kathleen , Jänne Pasi A. , Gjini Evisa , Edwards Robin , Rodig Scott , Reinherz Ellis L. , Oser Matthew G. , Barbie David A.
Published: April 2023

Supplementary Figures 1-12
Supplementary Data from Clinical Acquired Resistance to KRASG12C Inhibition through a Novel KRAS Switch-II Pocket Mutation and Polyclonal Alterations Converging on RAS–MAPK Reactivation
Authors: Tanaka Noritaka , Lin Jessica J. , Li Chendi , Ryan Meagan B. , Zhang Junbing , Kiedrowski Lesli A. , Michel Alexa G. , Syed Mohammed U. , Fella Katerina A. , Sakhi Mustafa , Baiev Islam , Juric Dejan , Gainor Justin F. , Klempner Samuel J. , Lennerz Jochen K. , Siravegna Giulia , Bar-Peled Liron , Hata Aaron N. , Heist Rebecca S. , Corcoran Ryan B.
Published: April 2023

Supplementary Materials
Table S2 from Microbiota-Centered Interventions: The Next Breakthrough in Immuno-Oncology?
Authors: Derosa Lisa , Routy Bertrand , Desilets Antoine , Daillère Romain , Terrisse Safae , Kroemer Guido , Zitvogel Laurence
Published: April 2023

Supplementary Table S2
Supplementary Table S1 from Transcriptional Silencing of ALDH2 Confers a Dependency on Fanconi Anemia Proteins in Acute Myeloid Leukemia
Authors: Yang Zhaolin , Wu Xiaoli S. , Wei Yiliang , Polyanskaya Sofya A. , Iyer Shruti V. , Jung Moonjung , Lach Francis P. , Adelman Emmalee R. , Klingbeil Olaf , Milazzo Joseph P. , Kramer Melissa , Demerdash Osama E. , Chang Kenneth , Goodwin Sara , Hodges Emily , McCombie W. Richard , Figueroa Maria E. , Smogorzewska Agata , Vakoc Christopher R.
Published: April 2023

The E2/E3 sgRNA guide sequences.
Supplementary Material from Transcriptional Silencing of ALDH2 Confers a Dependency on Fanconi Anemia Proteins in Acute Myeloid Leukemia
Authors: Yang Zhaolin , Wu Xiaoli S. , Wei Yiliang , Polyanskaya Sofya A. , Iyer Shruti V. , Jung Moonjung , Lach Francis P. , Adelman Emmalee R. , Klingbeil Olaf , Milazzo Joseph P. , Kramer Melissa , Demerdash Osama E. , Chang Kenneth , Goodwin Sara , Hodges Emily , McCombie W. Richard , Figueroa Maria E. , Smogorzewska Agata , Vakoc Christopher R.
Published: April 2023

Supplementary Figures
Table S2 from Inhibition of CDK4/6 Promotes CD8 T-cell Memory Formation
Authors: Heckler Max , Ali Lestat R. , Clancy-Thompson Eleanor , Qiang Li , Ventre Katherine S. , Lenehan Patrick , Roehle Kevin , Luoma Adrienne , Boelaars Kelly , Peters Vera , McCreary Julia , Boschert Tamara , Wang Eric S. , Suo Shengbao , Marangoni Francesco , Mempel Thorsten R. , Long Henry W. , Wucherpfennig Kai W. , Dougan Michael , Gray Nathanael S. , Yuan Guo-Cheng , Goel Shom , Tolaney Sara M. , Dougan Stephanie K.
Published: April 2023

Cluster defining genes
Supplementary Data from Obesity-Dependent Adipokine Chemerin Suppresses Fatty Acid Oxidation to Confer Ferroptosis Resistance
Authors: Tan Sze Kiat , Mahmud Iqbal , Fontanesi Flavia , Puchowicz Michelle , Neumann Chase K.A. , Griswold Anthony J. , Patel Rutulkumar , Dispagna Marco , Ahmed Hamzah H. , Gonzalgo Mark L. , Brown J. Mark , Garrett Timothy J. , Welford Scott M.
Published: April 2023

Supplementary data
Supplementary Figures from An In Vivo CRISPR Screening Platform for Prioritizing Therapeutic Targets in AML
Authors: Lin Shan , Larrue Clément , Scheidegger Nastassja K. , Seong Bo Kyung A. , Dharia Neekesh V. , Kuljanin Miljan , Wechsler Caroline S. , Kugener Guillaume , Robichaud Amanda L. , Conway Amy Saur , Mashaka Thelma , Mouche Sarah , Adane Biniam , Ryan Jeremy A. , Mancias Joseph D. , Younger Scott T. , Piccioni Federica , Lee Lynn H. , Wunderlich Mark , Letai Anthony , Tamburini Jérôme , Stegmaier Kimberly
Published: April 2023

Supplementary Figures from An In Vivo CRISPR Screening Platform for Prioritizing Therapeutic Targets in AML
Supplementary Data from An In Vivo CRISPR Screening Platform for Prioritizing Therapeutic Targets in AML
Authors: Lin Shan , Larrue Clément , Scheidegger Nastassja K. , Seong Bo Kyung A. , Dharia Neekesh V. , Kuljanin Miljan , Wechsler Caroline S. , Kugener Guillaume , Robichaud Amanda L. , Conway Amy Saur , Mashaka Thelma , Mouche Sarah , Adane Biniam , Ryan Jeremy A. , Mancias Joseph D. , Younger Scott T. , Piccioni Federica , Lee Lynn H. , Wunderlich Mark , Letai Anthony , Tamburini Jérôme , Stegmaier Kimberly
Published: April 2023

Supplementary Data from An In Vivo CRISPR Screening Platform for Prioritizing Therapeutic Targets in AML
All Supplementary Figures from Pharmacologic Activation of p53 Triggers Viral Mimicry Response Thereby Abolishing Tumor Immune Evasion and Promoting Antitumor Immunity
Authors: Zhou Xiaolei , Singh Madhurendra , Sanz Santos Gema , Guerlavais Vincent , Carvajal Luis A. , Aivado Manuel , Zhan Yue , Oliveira Mariana M.S. , Westerberg Lisa S. , Annis D. Allen , Johnsen John Inge , Selivanova Galina
Published: April 2023

All Supplementary Figures
Supplementary Methods, Tables, and Figure from Futibatinib, an Irreversible FGFR1–4 Inhibitor, in Patients with Advanced Solid Tumors Harboring FGF/FGFR Aberrations: A Phase I Dose-Expansion Study
Authors: Meric-Bernstam Funda , Bahleda Rastislav , Hierro Cinta , Sanson Marc , Bridgewater John , Arkenau Hendrik-Tobias , Tran Ben , Kelley Robin Kate , Park Joon Oh , Javle Milind , He Yaohua , Benhadji Karim A. , Goyal Lipika
Published: April 2023

Supplementary Appendix including all supplementary tables and figures
Supplementary Figures and Methods from Genetic Screens Identify a Context-Specific PI3K/p27Kip1 Node Driving Extrahepatic Biliary Cancer
Authors: Falcomatà Chiara , Bärthel Stefanie , Ulrich Angelika , Diersch Sandra , Veltkamp Christian , Rad Lena , Boniolo Fabio , Solar Myriam , Steiger Katja , Seidler Barbara , Zukowska Magdalena , Madej Joanna , Wang Mingsong , Öllinger Rupert , Maresch Roman , Barenboim Maxim , Eser Stefan , Tschurtschenthaler Markus , Mehrabi Arianeb , Roessler Stephanie , Goeppert Benjamin , Kind Alexander , Schnieke Angelika , Robles Maria S. , Bradley Allan , Schmid Roland M. , Schmidt-Supprian Marc , Reichert Maximilian , Weichert Wilko , Sansom Owen J. , Morton Jennifer P. , Rad Roland , Schneider Günter , Saur Dieter
Published: April 2023

Supplementary graphical abstract, eight Supplemental Figures, Supplementary Methods
Supplementary Table from Characterization of the Genomic and Immunologic Diversity of Malignant Brain Tumors through Multisector Analysis
Authors: Schaettler Maximilian O. , Richters Megan M. , Wang Anthony Z. , Skidmore Zachary L. , Fisk Bryan , Miller Katherine E. , Vickery Tammi L. , Kim Albert H. , Chicoine Michael R. , Osbun Joshua W. , Leuthardt Eric C. , Dowling Joshua L. , Zipfel Gregory J. , Dacey Ralph G. , Lu Hsiang-Chih , Johanns Tanner M. , Griffith Obi L. , Mardis Elaine R. , Griffith Malachi , Dunn Gavin P.
Published: April 2023

Supplementary Table from Characterization of the Genomic and Immunologic Diversity of Malignant Brain Tumors through Multisector Analysis
Figure S4 from RTK-Dependent Inducible Degradation of Mutant PI3Kα Drives GDC-0077 (Inavolisib) Efficacy
Authors: Song Kyung W. , Edgar Kyle A. , Hanan Emily J. , Hafner Marc , Oeh Jason , Merchant Mark , Sampath Deepak , Nannini Michelle A. , Hong Rebecca , Phu Lilian , Forrest William F. , Stawiski Eric , Schmidt Stephen , Endres Nicholas , Guan Jane , Wallin Jeffrey J. , Cheong Jonathan , Plise Emile G. , Lewis Phillips Gail D. , Salphati Laurent , Heffron Timothy P. , Olivero Alan G. , Malek Shiva , Staben Steven T. , Kirkpatrick Donald S. , Dey Anwesha , Friedman Lori S.
Published: April 2023

Taselisib depletes mutant p110a protein through ubiquitin and proteasome mechanism in a dose and time dependent manner
Figure S3 from RTK-Dependent Inducible Degradation of Mutant PI3Kα Drives GDC-0077 (Inavolisib) Efficacy
Authors: Song Kyung W. , Edgar Kyle A. , Hanan Emily J. , Hafner Marc , Oeh Jason , Merchant Mark , Sampath Deepak , Nannini Michelle A. , Hong Rebecca , Phu Lilian , Forrest William F. , Stawiski Eric , Schmidt Stephen , Endres Nicholas , Guan Jane , Wallin Jeffrey J. , Cheong Jonathan , Plise Emile G. , Lewis Phillips Gail D. , Salphati Laurent , Heffron Timothy P. , Olivero Alan G. , Malek Shiva , Staben Steven T. , Kirkpatrick Donald S. , Dey Anwesha , Friedman Lori S.
Published: April 2023

Taselisib and GDC-0077 induce mutant p110a and not WT p110a degradation
Figure S1 from RTK-Dependent Inducible Degradation of Mutant PI3Kα Drives GDC-0077 (Inavolisib) Efficacy
Authors: Song Kyung W. , Edgar Kyle A. , Hanan Emily J. , Hafner Marc , Oeh Jason , Merchant Mark , Sampath Deepak , Nannini Michelle A. , Hong Rebecca , Phu Lilian , Forrest William F. , Stawiski Eric , Schmidt Stephen , Endres Nicholas , Guan Jane , Wallin Jeffrey J. , Cheong Jonathan , Plise Emile G. , Lewis Phillips Gail D. , Salphati Laurent , Heffron Timothy P. , Olivero Alan G. , Malek Shiva , Staben Steven T. , Kirkpatrick Donald S. , Dey Anwesha , Friedman Lori S.
Published: April 2023

Taselisib and GDC-0077 have increased potency in PIK3CA-mutant cancer cells
Supplementary Figures S1-S7 from Endogenous Retroelement Activation by Epigenetic Therapy Reverses the Warburg Effect and Elicits Mitochondrial-Mediated Cancer Cell Death
Authors: Fresquet Vicente , Garcia-Barchino Maria J. , Larrayoz Marta , Celay Jon , Vicente Carmen , Fernandez-Galilea Marta , Larrayoz Maria J. , Calasanz Maria J. , Panizo Carlos , Junza Alexandra , Han Jiahuai , Prior Celia , Fortes Puri , Pio Ruben , Oyarzabal Julen , Martinez-Baztan Alvaro , Paiva Bruno , Moreno-Aliaga Maria J. , Odero Maria D. , Agirre Xabier , Yanes Oscar , Prosper Felipe , Martinez-Climent Jose A.
Published: April 2023

Supplementary Figures S1-S7 with legends
SupplementalTables from Mutations in the RAS/MAPK Pathway Drive Replication Repair–Deficient Hypermutated Tumors and Confer Sensitivity to MEK Inhibition
Authors: Campbell Brittany B. , Galati Melissa A. , Stone Simone C. , Riemenschneider Alexandra N. , Edwards Melissa , Sudhaman Sumedha , Siddaway Robert , Komosa Martin , Nunes Nuno M. , Nobre Liana , Morrissy A. Sorana , Zatzman Matthew , Zapotocky Michal , Joksimovic Lazar , Kalimuthu Sangeetha N. , Samuel David , Mason Gary , Bouffet Eric , Morgenstern Daniel A. , Aronson Melyssa , Durno Carol , Malkin David , Maris John M. , Taylor Michael D. , Shlien Adam , Pugh Trevor J. , Ohashi Pamela S. , Hawkins Cynthia E. , Tabori Uri
Published: April 2023

Table S1: Summary of likely pathogenic mutations detected in Foundation Medicine cohort of 1215 pediatric cancers. Table S2: Summary of RAS/MAPK pathway mutations and consequences detected in 48 RRD cancers.
Supplementary Table S6 from Resistance to Durvalumab and Durvalumab plus Tremelimumab Is Associated with Functional STK11 Mutations in Patients with Non–Small Cell Lung Cancer and Is Reversed by STAT3 Knockdown
Authors: Pore Nabendu , Wu Song , Standifer Nathan , Jure-Kunkel Maria , de los Reyes Melissa , Shrestha Yashaswi , Halpin Rebecca , Rothstein Raymond , Mulgrew Kathy , Blackmore Stephen , Martin Philip , Meekin John , Griffin Matthew , Bisha Ina , Proia Theresa A. , Miragaia Ricardo J. , Herbst Ronald , Gupta Ashok , Abdullah Shaad E. , Raja Rajiv , Frigault Melanie M. , Barrett J. Carl , Dennis Phillip A. , Ascierto Maria Libera , Oberst Michael D.
Published: April 2023

Marker genes for the lymphocyte subpopulations identified in Supplementary Figure 6. Only genes with adjusted p-value < 0.01 and average log fold-change > 0.3 were included. gene, gene name; p_val, p-value calculated based on Wilcoxon test; avg_logFC, log fold-change of the average expression between the given cluster and all other clusters; pct.1, fraction of gene-expressing cells in the given cluster; pct.2, fraction of gene-expressing cells in all other clusters; pct.diff, Difference between the percentage of gene-expressing cells in the given cluster and all other clusters; p_val_adj, Bonferroni adjusted p-value; cluster, cluster annotation based on the gene markers identified; resolution, clustering resolution parameter used in Seurat.
Table S2 from A Functional Taxonomy of Tumor Suppression in Oncogenic KRAS–Driven Lung Cancer
Authors: Cai Hongchen , Chew Su Kit , Li Chuan , Tsai Min K. , Andrejka Laura , Murray Christopher W. , Hughes Nicholas W. , Shuldiner Emily G. , Ashkin Emily L. , Tang Rui , Hung King L. , Chen Leo C. , Lee Shi Ya C. , Yousefi Maryam , Lin Wen-Yang , Kunder Christian A. , Cong Le , McFarland Christopher D. , Petrov Dmitri A. , Swanton Charles , Winslow Monte M.
Published: April 2023

Table S2. The information of sgRNA vectors in the high content Lenti-sgTS102/Cre pool.
Figure S1-S17, Table S3 from A Functional Taxonomy of Tumor Suppression in Oncogenic KRAS–Driven Lung Cancer
Authors: Cai Hongchen , Chew Su Kit , Li Chuan , Tsai Min K. , Andrejka Laura , Murray Christopher W. , Hughes Nicholas W. , Shuldiner Emily G. , Ashkin Emily L. , Tang Rui , Hung King L. , Chen Leo C. , Lee Shi Ya C. , Yousefi Maryam , Lin Wen-Yang , Kunder Christian A. , Cong Le , McFarland Christopher D. , Petrov Dmitri A. , Swanton Charles , Winslow Monte M.
Published: April 2023

(Updated, with minor text changes and rearrangements.) Figure S1-S4 (related to Figure 1) provide details on the selected genes and method. Figure S5 (related to Figure 2) shows the percentiles of all sgRNAs. Figure S6-S8 (related to Figure 3) present Stag2 validation and mechanistic investigations. Figure S9 (related to Figure 4) presents the percentiles of all genotypes at 26-week stage. Figure S10-S11 (related to Figure 5) suggest that genes that regulate tumor number are consistent across datasets. Figure S12 (related to Figure 6) provides additional evidence for the genes that regulate rare large tumors. Figure S13-S14 measure the influences of crowding and sex on Tuba-seq. Figure S15-S16 and Table S3 evaluate the specificity and sensitivity of Tuba-seq. Figure S17 (related to Figure 7) shows the complementarity of Tuba-seq to human datasets.
Table S2 from Blocking Short-Form Ron Eliminates Breast Cancer Metastases through Accumulation of Stem-Like CD4+ T Cells That Subvert Immunosuppression
Authors: Lai Shu-Chin Alicia , Gundlapalli Harika , Ekiz H. Atakan , Jiang Amanda , Fernandez Elvelyn , Welm Alana L.
Published: April 2023

Table S2 - Genes in immune cell clusters
Supplementary Figures from A Chimeric GM-CSF/IL18 Receptor to Sustain CAR T-cell Function
Authors: Lange Shannon , Sand Laurens G.L. , Bell Matthew , Patil Sagar L. , Langfitt Deanna , Gottschalk Stephen
Published: April 2023

Supplementary Figures 1 to 17
Table S1 from ZFTA Translocations Constitute Ependymoma Chromatin Remodeling and Transcription Factors
Authors: Kupp Robert , Ruff Lisa , Terranova Sabrina , Nathan Erica , Ballereau Stephane , Stark Rory , Sekhar Reddy Chilamakuri Chandra , Hoffmann Nadin , Wickham-Rahrmann Katherine , Widdess Marcus , Arabzade Amir , Zhao Yanhua , Varadharajan Srinidhi , Zheng Tuyu , Murugesan Mohankumar , Pfister Stefan M. , Kawauchi Daisuke , Pajtler Kristian W. , Deneen Benjamin , Mack Stephen C. , Masih Katherine E. , Gryder Berkley E. , Khan Javed , Gilbertson Richard J.
Published: April 2023

ZFTAFUS-sig
Supplementary Data from Implementing a Functional Precision Medicine Tumor Board for Acute Myeloid Leukemia
Authors: Malani Disha , Kumar Ashwini , Brück Oscar , Kontro Mika , Yadav Bhagwan , Hellesøy Monica , Kuusanmäki Heikki , Dufva Olli , Kankainen Matti , Eldfors Samuli , Potdar Swapnil , Saarela Jani , Turunen Laura , Parsons Alun , Västrik Imre , Kivinen Katja , Saarela Janna , Räty Riikka , Lehto Minna , Wolf Maija , Gjertsen Bjorn Tore , Mustjoki Satu , Aittokallio Tero , Wennerberg Krister , Heckman Caroline A. , Kallioniemi Olli , Porkka Kimmo
Published: April 2023

Supplement text file including supplement figures, supplementary table legends and supplement methods
Supplementary Methods from ZFTA Translocations Constitute Ependymoma Chromatin Remodeling and Transcription Factors
Authors: Kupp Robert , Ruff Lisa , Terranova Sabrina , Nathan Erica , Ballereau Stephane , Stark Rory , Sekhar Reddy Chilamakuri Chandra , Hoffmann Nadin , Wickham-Rahrmann Katherine , Widdess Marcus , Arabzade Amir , Zhao Yanhua , Varadharajan Srinidhi , Zheng Tuyu , Murugesan Mohankumar , Pfister Stefan M. , Kawauchi Daisuke , Pajtler Kristian W. , Deneen Benjamin , Mack Stephen C. , Masih Katherine E. , Gryder Berkley E. , Khan Javed , Gilbertson Richard J.
Published: April 2023

Additional Methods for online
Supplementary Tables from A CRISPR/Cas9-Engineered ARID1A-Deficient Human Gastric Cancer Organoid Model Reveals Essential and Nonessential Modes of Oncogenic Transformation
Authors: Lo Yuan-Hung , Kolahi Kevin S. , Du Yuhong , Chang Chiung-Ying , Krokhotin Andrey , Nair Ajay , Sobba Walter D. , Karlsson Kasper , Jones Sunny J. , Longacre Teri A. , Mah Amanda T. , Tercan Bahar , Sockell Alexandra , Xu Hang , Seoane Jose A. , Chen Jin , Shmulevich Ilya , Weissman Jonathan S. , Curtis Christina , Califano Andrea , Fu Haian , Crabtree Gerald R. , Kuo Calvin J.
Published: April 2023

Supplementary Tables
Supplementary Figures S1-S3 from Repurposing Vandetanib plus Everolimus for the Treatment of ACVR1-Mutant Diffuse Intrinsic Pontine Glioma
Authors: Carvalho Diana M. , Richardson Peter J. , Olaciregui Nagore , Stankunaite Reda , Lavarino Cinzia , Molinari Valeria , Corley Elizabeth A. , Smith Daniel P. , Ruddle Ruth , Donovan Adam , Pal Akos , Raynaud Florence I. , Temelso Sara , Mackay Alan , Overington John P. , Phelan Anne , Sheppard David , Mackinnon Andrew , Zebian Bassel , Al-Sarraj Safa , Merve Ashirwad , Pryce Jeremy , Grill Jacques , Hubank Michael , Cruz Ofelia , Morales La Madrid Andres , Mueller Sabine , Carcaboso Angel M. , Carceller Fernando , Jones Chris
Published: April 2023

Supplementary Figures S1-S3
Supplementary Table 4 from Nongenetic Evolution Drives Lung Adenocarcinoma Spatial Heterogeneity and Progression
Authors: Tavernari Daniele , Battistello Elena , Dheilly Elie , Petruzzella Aaron S. , Mina Marco , Sordet-Dessimoz Jessica , Peters Solange , Krueger Thorsten , Gfeller David , Riggi Nicolo , Oricchio Elisa , Letovanec Igor , Ciriello Giovanni
Published: April 2023

Supplementary Table 4
Supplementary Figures from A Phase I Trial of Regional Mesothelin-Targeted CAR T-cell Therapy in Patients with Malignant Pleural Disease, in Combination with the Anti–PD-1 Agent Pembrolizumab
Authors: Adusumilli Prasad S. , Zauderer Marjorie G. , Rivière Isabelle , Solomon Stephen B. , Rusch Valerie W. , O'Cearbhaill Roisin E. , Zhu Amy , Cheema Waseem , Chintala Navin K. , Halton Elizabeth , Pineda John , Perez-Johnston Rocio , Tan Kay See , Daly Bobby , Araujo Filho Jose A. , Ngai Daniel , McGee Erin , Vincent Alain , Diamonte Claudia , Sauter Jennifer L. , Modi Shanu , Sikder Devanjan , Senechal Brigitte , Wang Xiuyan , Travis William D. , Gönen Mithat , Rudin Charles M. , Brentjens Renier J. , Jones David R. , Sadelain Michel
Published: April 2023

Supplemental Figures
Supplementary Tables from Multiomic Analysis of Lung Tumors Defines Pathways Activated in Neuroendocrine Transformation
Authors: Quintanal-Villalonga Alvaro , Taniguchi Hirokazu , Zhan Yingqian A. , Hasan Maysun M. , Chavan Shweta S. , Meng Fanli , Uddin Fathema , Manoj Parvathy , Donoghue Mark T.A. , Won Helen H. , Chan Joseph M. , Ciampricotti Metamia , Chow Andrew , Offin Michael , Chang Jason C. , Ray-Kirton Jordana , Tischfield Sam E. , Egger Jacklynn , Bhanot Umesh K. , Linkov Irina , Asher Marina , Sinha Sonali , Silber Joachim , Iacobuzio-Donahue Christine A. , Roehrl Michael H. , Hollmann Travis J. , Yu Helena A. , Qiu Juan , de Stanchina Elisa , Baine Marina K. , Rekhtman Natasha , Poirier John T. , Loomis Brian , Koche Richard P. , Rudin Charles M. , Sen Triparna
Published: April 2023

Supplemental tables S1-S15
Supplementary Figures from Multiomic Analysis of Lung Tumors Defines Pathways Activated in Neuroendocrine Transformation
Authors: Quintanal-Villalonga Alvaro , Taniguchi Hirokazu , Zhan Yingqian A. , Hasan Maysun M. , Chavan Shweta S. , Meng Fanli , Uddin Fathema , Manoj Parvathy , Donoghue Mark T.A. , Won Helen H. , Chan Joseph M. , Ciampricotti Metamia , Chow Andrew , Offin Michael , Chang Jason C. , Ray-Kirton Jordana , Tischfield Sam E. , Egger Jacklynn , Bhanot Umesh K. , Linkov Irina , Asher Marina , Sinha Sonali , Silber Joachim , Iacobuzio-Donahue Christine A. , Roehrl Michael H. , Hollmann Travis J. , Yu Helena A. , Qiu Juan , de Stanchina Elisa , Baine Marina K. , Rekhtman Natasha , Poirier John T. , Loomis Brian , Koche Richard P. , Rudin Charles M. , Sen Triparna
Published: April 2023

Supplemental figures and figure legends.
Supplementary Figure from LKB1/STK11 Is a Tumor Suppressor in the Progression of Myeloproliferative Neoplasms
Authors: Marinaccio Christian , Suraneni Praveen , Celik Hamza , Volk Andrew , Wen Qiang Jeremy , Ling Te , Bulic Marinka , Lasho Terra , Koche Richard P. , Famulare Christopher A. , Farnoud Noushin , Stein Brady , Schieber Michael , Gurbuxani Sandeep , Root David E. , Younger Scott T. , Hoffman Ronald , Gangat Naseema , Ntziachristos Panagiotis , Chandel Navdeep S. , Levine Ross L. , Rampal Raajit K. , Challen Grant A. , Tefferi Ayalew , Crispino John D.
Published: April 2023

Supplementary Figure from LKB1/STK11 Is a Tumor Suppressor in the Progression of Myeloproliferative Neoplasms
Supplementary Table from Prolonged SARS-CoV-2 Infection in Patients with Lymphoid Malignancies
Authors: Lee Christina Y. , Shah Monika K. , Hoyos David , Solovyov Alexander , Douglas Melanie , Taur Ying , Maslak Peter , Babady N. Esther , Greenbaum Benjamin , Kamboj Mini , Vardhana Santosha A.
Published: April 2023

Supplementary Table from Prolonged SARS-CoV-2 Infection in Patients with Lymphoid Malignancies
Supplementary Figure from Prolonged SARS-CoV-2 Infection in Patients with Lymphoid Malignancies
Authors: Lee Christina Y. , Shah Monika K. , Hoyos David , Solovyov Alexander , Douglas Melanie , Taur Ying , Maslak Peter , Babady N. Esther , Greenbaum Benjamin , Kamboj Mini , Vardhana Santosha A.
Published: April 2023

Supplementary Figure from Prolonged SARS-CoV-2 Infection in Patients with Lymphoid Malignancies
Supplementary Data from Prolonged SARS-CoV-2 Infection in Patients with Lymphoid Malignancies
Authors: Lee Christina Y. , Shah Monika K. , Hoyos David , Solovyov Alexander , Douglas Melanie , Taur Ying , Maslak Peter , Babady N. Esther , Greenbaum Benjamin , Kamboj Mini , Vardhana Santosha A.
Published: April 2023

Supplementary Data from Prolonged SARS-CoV-2 Infection in Patients with Lymphoid Malignancies
Table S3 from Actinomycin D Targets NPM1c-Primed Mitochondria to Restore PML-Driven Senescence in AML Therapy
Authors: Wu Hsin-Chieh , Rérolle Domitille , Berthier Caroline , Hleihel Rita , Sakamoto Takashi , Quentin Samuel , Benhenda Shirine , Morganti Claudia , Wu Chengchen , Conte Lidio , Rimsky Sylvie , Sebert Marie , Clappier Emmanuelle , Souquere Sylvie , Gachet Stéphanie , Soulier Jean , Durand Sylvère , Trowbridge Jennifer J. , Bénit Paule , Rustin Pierre , El Hajj Hiba , Raffoux Emmanuel , Ades Lionel , Itzykson Raphael , Dombret Hervé , Fenaux Pierre , Espeli Olivier , Kroemer Guido , Brunetti Lorenzo , Mak Tak W. , Lallemand-Breitenbach Valérie , Bazarbachi Ali , Falini Brunangelo , Ito Keisuke , Martelli Maria Paola , de Thé Hugues
Published: April 2023

Supplementary table S3
Table S2 from Actinomycin D Targets NPM1c-Primed Mitochondria to Restore PML-Driven Senescence in AML Therapy
Authors: Wu Hsin-Chieh , Rérolle Domitille , Berthier Caroline , Hleihel Rita , Sakamoto Takashi , Quentin Samuel , Benhenda Shirine , Morganti Claudia , Wu Chengchen , Conte Lidio , Rimsky Sylvie , Sebert Marie , Clappier Emmanuelle , Souquere Sylvie , Gachet Stéphanie , Soulier Jean , Durand Sylvère , Trowbridge Jennifer J. , Bénit Paule , Rustin Pierre , El Hajj Hiba , Raffoux Emmanuel , Ades Lionel , Itzykson Raphael , Dombret Hervé , Fenaux Pierre , Espeli Olivier , Kroemer Guido , Brunetti Lorenzo , Mak Tak W. , Lallemand-Breitenbach Valérie , Bazarbachi Ali , Falini Brunangelo , Ito Keisuke , Martelli Maria Paola , de Thé Hugues
Published: April 2023

Supplementary table S2
Supplementary Figures and Methods from Actinomycin D Targets NPM1c-Primed Mitochondria to Restore PML-Driven Senescence in AML Therapy
Authors: Wu Hsin-Chieh , Rérolle Domitille , Berthier Caroline , Hleihel Rita , Sakamoto Takashi , Quentin Samuel , Benhenda Shirine , Morganti Claudia , Wu Chengchen , Conte Lidio , Rimsky Sylvie , Sebert Marie , Clappier Emmanuelle , Souquere Sylvie , Gachet Stéphanie , Soulier Jean , Durand Sylvère , Trowbridge Jennifer J. , Bénit Paule , Rustin Pierre , El Hajj Hiba , Raffoux Emmanuel , Ades Lionel , Itzykson Raphael , Dombret Hervé , Fenaux Pierre , Espeli Olivier , Kroemer Guido , Brunetti Lorenzo , Mak Tak W. , Lallemand-Breitenbach Valérie , Bazarbachi Ali , Falini Brunangelo , Ito Keisuke , Martelli Maria Paola , de Thé Hugues
Published: April 2023

Supplementary figures and methods
Key Resources Table from Actinomycin D Targets NPM1c-Primed Mitochondria to Restore PML-Driven Senescence in AML Therapy
Authors: Wu Hsin-Chieh , Rérolle Domitille , Berthier Caroline , Hleihel Rita , Sakamoto Takashi , Quentin Samuel , Benhenda Shirine , Morganti Claudia , Wu Chengchen , Conte Lidio , Rimsky Sylvie , Sebert Marie , Clappier Emmanuelle , Souquere Sylvie , Gachet Stéphanie , Soulier Jean , Durand Sylvère , Trowbridge Jennifer J. , Bénit Paule , Rustin Pierre , El Hajj Hiba , Raffoux Emmanuel , Ades Lionel , Itzykson Raphael , Dombret Hervé , Fenaux Pierre , Espeli Olivier , Kroemer Guido , Brunetti Lorenzo , Mak Tak W. , Lallemand-Breitenbach Valérie , Bazarbachi Ali , Falini Brunangelo , Ito Keisuke , Martelli Maria Paola , de Thé Hugues
Published: April 2023

Key resource table with RRID
Supplementary table S8 from Gut Microbiome Directs Hepatocytes to Recruit MDSCs and Promote Cholangiocarcinoma
Authors: Zhang Qianfei , Ma Chi , Duan Yi , Heinrich Bernd , Rosato Umberto , Diggs Laurence P. , Ma Lichun , Roy Soumen , Fu Qiong , Brown Zachary J. , Wabitsch Simon , Thovarai Vishal , Fu Jianyang , Feng Dechun , Ruf Benjamin , Cui Linda L. , Subramanyam Varun , Frank Karen M. , Wang Sophie , Kleiner David E. , Ritz Thomas , Rupp Christian , Gao Bin , Longerich Thomas , Kroemer Alexander , Wang Xin Wei , Ruchirawat Mathuros , Korangy Firouzeh , Schnabl Bernd , Trinchieri Giorgio , Greten Tim F.
Published: April 2023

16s rRNA sequencing of PSC patients
Supplementary file - liver genes from Genomic and Transcriptomic Analyses of Breast Cancer Primaries and Matched Metastases in AURORA, the Breast International Group (BIG) Molecular Screening Initiative
Authors: Aftimos Philippe , Oliveira Mafalda , Irrthum Alexandre , Fumagalli Debora , Sotiriou Christos , Gal-Yam Einav Nili , Robson Mark E. , Ndozeng Justin , Di Leo Angelo , Ciruelos Eva M. , de Azambuja Evandro , Viale Giuseppe , Scheepers Elsemieke D. , Curigliano Giuseppe , Bliss Judith M. , Reis-Filho Jorge S. , Colleoni Marco , Balic Marija , Cardoso Fatima , Albanell Joan , Duhem Caroline , Marreaud Sandrine , Romagnoli Dario , Rojas Beatriz , Gombos Andrea , Wildiers Hans , Guerrero-Zotano Angel , Hall Peter , Bonetti Andrea , Larsson Karolina Fs , Degiorgis Martina , Khodaverdi Silvia , Greil Richard , Sverrisdóttir Ásgerdur , Paoli Marta , Seyll Ethel , Loibl Sibylle , Linderholm Barbro , Zoppoli Gabriele , Davidson Nancy E. , Johannsson Oskar Th , Bedard Philippe L. , Loi Sherene , Knox Susan , Cameron David A. , Harbeck Nadia , Montoya Maite Lasa , Brandão Mariana , Vingiani Andrea , Caballero Carmela , Hilbers Florentine S. , Yates Lucy R. , Benelli Matteo , Venet David , Piccart Martine J.
Published: April 2023

Supplementary file with the listing of the liver genes excluded from transcriptomic analyses.
Supplementary Movie 1 from TNIK Is a Therapeutic Target in Lung Squamous Cell Carcinoma and Regulates FAK Activation through Merlin
Authors: Torres-Ayuso Pedro , An Elvira , Nyswaner Katherine M. , Bensen Ryan C. , Ritt Daniel A. , Specht Suzanne I. , Das Sudipto , Andresson Thorkell , Cachau Raul E. , Liang Roger J. , Ries Amy L. , Robinson Christina M. , Difilippantonio Simone , Gouker Brad , Bassel Laura , Karim Baktiar O. , Miller Chad J. , Turk Benjamin E. , Morrison Deborah K. , Brognard John
Published: April 2023

Supplementary Movie depicting the proposed mechanism through which amplified TNIK contributes to LSCC cell viability
Supplementary Methods from TNIK Is a Therapeutic Target in Lung Squamous Cell Carcinoma and Regulates FAK Activation through Merlin
Authors: Torres-Ayuso Pedro , An Elvira , Nyswaner Katherine M. , Bensen Ryan C. , Ritt Daniel A. , Specht Suzanne I. , Das Sudipto , Andresson Thorkell , Cachau Raul E. , Liang Roger J. , Ries Amy L. , Robinson Christina M. , Difilippantonio Simone , Gouker Brad , Bassel Laura , Karim Baktiar O. , Miller Chad J. , Turk Benjamin E. , Morrison Deborah K. , Brognard John
Published: April 2023

Supplementary Methods
Supplementary Table from EGFR Inhibition Potentiates FGFR Inhibitor Therapy and Overcomes Resistance in FGFR2 Fusion–Positive Cholangiocarcinoma
Authors: Wu Qibiao , Zhen Yuanli , Shi Lei , Vu Phuong , Greninger Patricia , Adil Ramzi , Merritt Joshua , Egan Regina , Wu Meng-Ju , Yin Xunqin , Ferrone Cristina R. , Deshpande Vikram , Baiev Islam , Pinto Christopher J. , McLoughlin Daniel E. , Walmsley Charlotte S. , Stone James R. , Gordan John D. , Zhu Andrew X. , Juric Dejan , Goyal Lipika , Benes Cyril H. , Bardeesy Nabeel
Published: April 2023

Supplementary Table from EGFR Inhibition Potentiates FGFR Inhibitor Therapy and Overcomes Resistance in FGFR2 Fusion–Positive Cholangiocarcinoma
Supplementary Figure from The Polarity and Specificity of Antiviral T Lymphocyte Responses Determine Susceptibility to SARS-CoV-2 Infection in Patients with Cancer and Healthy Individuals
Authors: Fahrner Jean-Eudes , Lahmar Imran , Goubet Anne-Gaëlle , Haddad Yacine , Carrier Agathe , Mazzenga Marine , Drubay Damien , Alves Costa Silva Carolina , de Sousa Eric , Thelemaque Cassandra , Melenotte Cléa , Dubuisson Agathe , Geraud Arthur , Ferrere Gladys , Birebent Roxanne , Bigenwald Camille , Picard Marion , Cerbone Luigi , Lérias Joana R. , Laparra Ariane , Bernard-Tessier Alice , Kloeckner Benoît , Gazzano Marianne , Danlos François-Xavier , Terrisse Safae , Pizzato Eugenie , Flament Caroline , Ly Pierre , Tartour Eric , Benhamouda Nadine , Meziani Lydia , Ahmed-Belkacem Abdelhakim , Miyara Makoto , Gorochov Guy , Barlesi Fabrice , Trubert Alexandre , Ungar Benjamin , Estrada Yeriel , Pradon Caroline , Gallois Emmanuelle , Pommeret Fanny , Colomba Emeline , Lavaud Pernelle , Deloger Marc , Droin Nathalie , Deutsch Eric , Gachot Bertrand , Spano Jean-Philippe , Merad Mansouria , Scotté Florian , Marabelle Aurélien , Griscelli Frank , Blay Jean-Yves , Soria Jean-Charles , Merad Miriam , André Fabrice , Villemonteix Juliette , Chevalier Mathieu F. , Caillat-Zucman Sophie , Fenollar Florence , Guttman-Yassky Emma , Launay Odile , Kroemer Guido , La Scola Bernard , Maeurer Markus , Derosa Lisa , Zitvogel Laurence
Published: April 2023

Supplementary Figure from The Polarity and Specificity of Antiviral T Lymphocyte Responses Determine Susceptibility to SARS-CoV-2 Infection in Patients with Cancer and Healthy Individuals
Supplementary Data from The Polarity and Specificity of Antiviral T Lymphocyte Responses Determine Susceptibility to SARS-CoV-2 Infection in Patients with Cancer and Healthy Individuals
Authors: Fahrner Jean-Eudes , Lahmar Imran , Goubet Anne-Gaëlle , Haddad Yacine , Carrier Agathe , Mazzenga Marine , Drubay Damien , Alves Costa Silva Carolina , de Sousa Eric , Thelemaque Cassandra , Melenotte Cléa , Dubuisson Agathe , Geraud Arthur , Ferrere Gladys , Birebent Roxanne , Bigenwald Camille , Picard Marion , Cerbone Luigi , Lérias Joana R. , Laparra Ariane , Bernard-Tessier Alice , Kloeckner Benoît , Gazzano Marianne , Danlos François-Xavier , Terrisse Safae , Pizzato Eugenie , Flament Caroline , Ly Pierre , Tartour Eric , Benhamouda Nadine , Meziani Lydia , Ahmed-Belkacem Abdelhakim , Miyara Makoto , Gorochov Guy , Barlesi Fabrice , Trubert Alexandre , Ungar Benjamin , Estrada Yeriel , Pradon Caroline , Gallois Emmanuelle , Pommeret Fanny , Colomba Emeline , Lavaud Pernelle , Deloger Marc , Droin Nathalie , Deutsch Eric , Gachot Bertrand , Spano Jean-Philippe , Merad Mansouria , Scotté Florian , Marabelle Aurélien , Griscelli Frank , Blay Jean-Yves , Soria Jean-Charles , Merad Miriam , André Fabrice , Villemonteix Juliette , Chevalier Mathieu F. , Caillat-Zucman Sophie , Fenollar Florence , Guttman-Yassky Emma , Launay Odile , Kroemer Guido , La Scola Bernard , Maeurer Markus , Derosa Lisa , Zitvogel Laurence
Published: April 2023

Supplementary Data from The Polarity and Specificity of Antiviral T Lymphocyte Responses Determine Susceptibility to SARS-CoV-2 Infection in Patients with Cancer and Healthy Individuals
Supplementary movie from Pharmacologic Reduction of Mitochondrial Iron Triggers a Noncanonical BAX/BAK-Dependent Cell Death
Authors: Garciaz Sylvain , Guirguis Andrew A. , Müller Sebastian , Brown Fiona C. , Chan Yih-Chih , Motazedian Ali , Rowe Caitlin L. , Kuzich James A. , Chan Kah Lok , Tran Kevin , Smith Lorey , MacPherson Laura , Liddicoat Brian , Lam Enid Y.N. , Cañeque Tatiana , Burr Marian L. , Litalien Véronique , Pomilio Giovanna , Poplineau Mathilde , Duprez Estelle , Dawson Sarah-Jane , Ramm Georg , Cox Andrew G. , Brown Kristin K. , Huang David C.S. , Wei Andrew H. , McArthur Kate , Rodriguez Raphaël , Dawson Mark A.
Published: April 2023

Supplementary movie from Pharmacologic Reduction of Mitochondrial Iron Triggers a Noncanonical BAX/BAK-Dependent Cell Death
Supplementary Table from Genomic Landscape and Clinical Utility in Korean Advanced Pan-Cancer Patients from Prospective Clinical Sequencing: K-MASTER Program
Authors: Park Kyong Hwa , Choi Jung Yoon , Lim Ah-Reum , Kim Ju Won , Choi Yoon Ji , Lee Soohyeon , Sung Jae Sook , Chung Hee-Joon , Jang Byunghyun , Yoon Dayoung , Kim Sukwon , Sa Jason K. , Kim Yeul Hong
Published: April 2023

Supplementary Table from Genomic Landscape and Clinical Utility in Korean Advanced Pan-Cancer Patients from Prospective Clinical Sequencing: K-MASTER Program
Supplementary Figure from Genomic Landscape and Clinical Utility in Korean Advanced Pan-Cancer Patients from Prospective Clinical Sequencing: K-MASTER Program
Authors: Park Kyong Hwa , Choi Jung Yoon , Lim Ah-Reum , Kim Ju Won , Choi Yoon Ji , Lee Soohyeon , Sung Jae Sook , Chung Hee-Joon , Jang Byunghyun , Yoon Dayoung , Kim Sukwon , Sa Jason K. , Kim Yeul Hong
Published: April 2023

Supplementary Figure from Genomic Landscape and Clinical Utility in Korean Advanced Pan-Cancer Patients from Prospective Clinical Sequencing: K-MASTER Program
Supplementary Data from The European MAPPYACTS Trial: Precision Medicine Program in Pediatric and Adolescent Patients with Recurrent Malignancies
Authors: Berlanga Pablo , Pierron Gaelle , Lacroix Ludovic , Chicard Mathieu , Adam de Beaumais Tiphaine , Marchais Antonin , Harttrampf Anne C. , Iddir Yasmine , Larive Alicia , Soriano Fernandez Aroa , Hezam Imene , Chevassus Cecile , Bernard Virginie , Cotteret Sophie , Scoazec Jean-Yves , Gauthier Arnaud , Abbou Samuel , Corradini Nadege , André Nicolas , Aerts Isabelle , Thebaud Estelle , Casanova Michela , Owens Cormac , Hladun-Alvaro Raquel , Michiels Stefan , Delattre Olivier , Vassal Gilles , Schleiermacher Gudrun , Geoerger Birgit
Published: April 2023

Supplementary Data from The European MAPPYACTS Trial: Precision Medicine Program in Pediatric and Adolescent Patients with Recurrent Malignancies
Supplementary Figure from Elevated Mutational Age in Blood of Children Treated for Cancer Contributes to Therapy-Related Myeloid Neoplasms
Authors: Bertrums Eline J.M. , Rosendahl Huber Axel K.M. , de Kanter Jurrian K. , Brandsma Arianne M. , van Leeuwen Anaïs J.C.N. , Verheul Mark , van den Heuvel-Eibrink Marry M. , Oka Rurika , van Roosmalen Markus J. , de Groot-Kruseman Hester A. , Zwaan C. Michel , Goemans Bianca F. , van Boxtel Ruben
Published: April 2023

Supplementary Figure from Elevated Mutational Age in Blood of Children Treated for Cancer Contributes to Therapy-Related Myeloid Neoplasms
Supplementary Data from NCOA4-Mediated Ferritinophagy Is a Pancreatic Cancer Dependency via Maintenance of Iron Bioavailability for Iron–Sulfur Cluster Proteins
Authors: Santana-Codina Naiara , del Rey Maria Quiles , Kapner Kevin S. , Zhang Huan , Gikandi Ajami , Malcolm Callum , Poupault Clara , Kuljanin Miljan , John Kristen M. , Biancur Douglas E. , Chen Brandon , Das Nupur K. , Lowder Kristen E. , Hennessey Connor J. , Huang Wesley , Yang Annan , Shah Yatrik M. , Nowak Jonathan A. , Aguirre Andrew J. , Mancias Joseph D.
Published: April 2023

Supplementary Data from NCOA4-Mediated Ferritinophagy Is a Pancreatic Cancer Dependency via Maintenance of Iron Bioavailability for Iron–Sulfur Cluster Proteins
Supplementary Data from Coordinated Transcriptional and Catabolic Programs Support Iron-Dependent Adaptation to RAS–MAPK Pathway Inhibition in Pancreatic Cancer
Authors: Ravichandran Mirunalini , Hu Jingjie , Cai Charles , Ward Nathan P. , Venida Anthony , Foakes Callum , Kuljanin Miljan , Yang Annan , Hennessey Connor J. , Yang Yang , Desousa Brandon R. , Rademaker Gilles , Staes Annelot A.L. , Cakir Zeynep , Jain Isha H. , Aguirre Andrew J. , Mancias Joseph D. , Shen Yin , DeNicola Gina M. , Perera Rushika M.
Published: April 2023

Supplementary Data from Coordinated Transcriptional and Catabolic Programs Support Iron-Dependent Adaptation to RAS–MAPK Pathway Inhibition in Pancreatic Cancer
Supplementary Figure from Sequential Single-Cell Transcriptional and Protein Marker Profiling Reveals TIGIT as a Marker of CD19 CAR-T Cell Dysfunction in Patients with Non-Hodgkin Lymphoma
Authors: Jackson Zachary , Hong Changjin , Schauner Robert , Dropulic Boro , Caimi Paolo F. , de Lima Marcos , Giraudo Maria Florencia , Gupta Kalpana , Reese Jane S. , Hwang Tae Hyun , Wald David N.
Published: April 2023

Supplementary Figure from Sequential Single-Cell Transcriptional and Protein Marker Profiling Reveals TIGIT as a Marker of CD19 CAR-T Cell Dysfunction in Patients with Non-Hodgkin Lymphoma
Supplementary Data from Stress Granules Determine the Development of Obesity-Associated Pancreatic Cancer
Authors: Fonteneau Guillaume , Redding Alexandra , Hoag-Lee Hannah , Sim Edward S. , Heinrich Stefan , Gaida Matthias M. , Grabocka Elda
Published: April 2023

Supplementary Data from Stress Granules Determine the Development of Obesity-Associated Pancreatic Cancer
Supplementary Figure from A Therapeutically Actionable Protumoral Axis of Cytokines Involving IL-8, TNFα, and IL-1β
Authors: Olivera Irene , Sanz-Pamplona Rebeca , Bolaños Elixabet , Rodriguez Inmaculada , Etxeberria Iñaki , Cirella Assunta , Egea Josune , Garasa Saray , Migueliz Itziar , Eguren-Santamaria Iñaki , Sanmamed Miguel F. , Glez-Vaz Javier , Azpilikueta Arantza , Alvarez Maite , Ochoa María C. , Malacrida Beatrice , Propper David , de Andrea Carlos E. , Berraondo Pedro , Balkwill Frances R. , Teijeira Álvaro , Melero Ignacio
Published: April 2023

Supplementary Figure from A Therapeutically Actionable Protumoral Axis of Cytokines Involving IL-8, TNFα, and IL-1β
Supplementary Figures from Dysregulated Lipid Synthesis by Oncogenic IDH1 Mutation Is a Targetable Synthetic Lethal Vulnerability
Authors: Thomas Daniel , Wu Manhong , Nakauchi Yusuke , Zheng Ming , Thompson-Peach Chloe A.L. , Lim Kelly , Landberg Niklas , Köhnke Thomas , Robinson Nirmal , Kaur Satinder , Kutyna Monika , Stafford Melissa , Hiwase Devendra , Reinisch Andreas , Peltz Gary , Majeti Ravindra
Published: April 2023

Supplementary Figure file showing Figures S1-S7
Supp Table 1 from Human Bone Marrow Organoids for Disease Modeling, Discovery, and Validation of Therapeutic Targets in Hematologic Malignancies
Authors: Khan Abdullah O. , Rodriguez-Romera Antonio , Reyat Jasmeet S. , Olijnik Aude-Anais , Colombo Michela , Wang Guanlin , Wen Wei Xiong , Sousos Nikolaos , Murphy Lauren C. , Grygielska Beata , Perrella Gina , Mahony Christopher B. , Ling Rebecca E. , Elliott Natalina E. , Karali Christina Simoglou , Stone Andrew P. , Kemble Samuel , Cutler Emily A. , Fielding Adele K. , Croft Adam P. , Bassett David , Poologasundarampillai Gowsihan , Roy Anindita , Gooding Sarah , Rayes Julie , Machlus Kellie R. , Psaila Bethan
Published: April 2023

Supplementary Table 1 VEGFAC Top Differentially Expressed Genes by Cluster
Supplementary Figure 6 from A Small Molecule Reacts with the p53 Somatic Mutant Y220C to Rescue Wild-type Thermal Stability
Authors: Guiley Keelan Z. , Shokat Kevan M.
Published: April 2023

Supplementary Figure S6: Western blots and for 28°C IP and CETSA (A) H1299 cells stably expressing p53 Y220C or p53 R273C were transferred from 37°C to 28°C and p21/MDM2 levels were monitored by western blot at the indicated time points. (B) U2OS cells stably expressing p53 Y220C or parent were transferred to a 28°C incubator and p21/MDM2 levels were observed by western blot at the indicated time points. (C) Extracts from H1299 cells expressing p53 Y220C incubated at 37°C or 28°C for 24 hr were immunoprecipitated with the WT conformation antibody Pab1620. (D) CETSA western blot for p53 Y220C DMSO. (E) CETSA western blot for p53 Y220C treated with 100 μM KG13 for 1 hr. (F) CETSA western blot for p53 WT DMSO.
Supplementary Video 3 from Bone Metastasis Initiation Is Coupled with Bone Remodeling through Osteogenic Differentiation of NG2+ Cells
Authors: Zhang Weijie , Xu Zhan , Hao Xiaoxin , He Tiancheng , Li Jiasong , Shen Yichao , Liu Kai , Gao Yang , Liu Jun , Edwards David G. , Muscarella Aaron M. , Wu Ling , Yu Liqun , Xu Longyong , Chen Xi , Wu Yi-Hsuan , Bado Igor L. , Ding Yunfeng , Aguirre Sergio , Wang Hai , Gugala Zbigniew , Satcher Robert L. , Wong Stephen T.C. , Zhang Xiang H.-F.
Published: April 2023

Supplemantary Video 3, LLC1 cells cocultured with NG2- BMSCs