bluuebunny/crossref_metadata_2025 huggingface dataset:
The influence of X chromosome variants on trait neuroticism
Authors: Luciano Michelle , Davies Gail , Summers Kim M. , Hill W. David , Hayward Caroline , Liewald David C. , Porteous David J. , Gale Catharine R. , McIntosh Andrew M. , Deary Ian J.
Published: March 2019

Autosomal variants have successfully been associated with trait neuroticism in genome-wide analysis of adequately powered samples. But such studies have so far excluded the X chromosome from analysis. Here, we report genetic association analyses of X chromosome and XY pseudoautosomal single nucleotide polymorphisms (SNPs) and trait neuroticism using UK Biobank samples (N = 405,274). Significant association was found with neuroticism on the X chromosome for 204 markers found within three independent loci (a further 783 were suggestive). Most of the lead neuroticism-related X chromosome variants were located in intergenic regions (n = 397). Involvement ofHS6ST2, which has been previously associated with sociability behaviour in the dog, was supported by single SNP and gene-based tests. We found that the amino acid and nucleotide sequences are highly conserved between dogs and humans. From the suggestive X chromosome variants, there were 19 nearby genes which could be linked to gene ontology information. Molecular function was primarily related to binding and catalytic activity; notable biological processes were cellular and metabolic, and nucleic acid binding and transcription factor protein classes were most commonly involved. X-variant heritability of neuroticism was estimated at 0.22% (SE = 0.05) from a full dosage compensation model. A polygenic X-variant score created in an independent sample (maximumN≈ 7,300) did not predict significant variance in neuroticism, psychological distress, or depressive disorder. We conclude that the X chromosome harbours significant variants influencing neuroticism, and might prove important for other quantitative traits and complex disorders.
Fucosyltransferase 1 and 2 play pivotal roles in breast cancer cells
Authors: Lai Tai-Yu , Chen I-Ju , Lin Ruey-Jen , Liao Guo-Shiou , Yeo Hui-Ling , Ho Ching-Liang , Wu Jen-Chine , Chang Nai-Chuan , Lee Andy Chi-Lung , Yu Alice L.
Published: March 2019

FUT1 and FUT2 encode alpha 1, 2-fucosyltransferases which catalyze the addition of alpha 1, 2-linked fucose to glycans. Glycan products of FUT1 and FUT2, such as Globo H and Lewis Y, are highly expressed on malignant tissues, including breast cancer. Herein, we investigated the roles of FUT1 and FUT2 in breast cancer. Silencing of FUT1 or FUT2 by shRNAs inhibited cell proliferation in vitro and tumorigenicity in mice. This was associated with diminished properties of cancer stem cell (CSC), including mammosphere formation and CSC marker both in vitro and in xenografts. Silencing of FUT2, but not FUT1, significantly changed the cuboidal morphology to dense clusters of small and round cells with reduced adhesion to polystyrene and extracellular matrix, including laminin, fibronectin and collagen. Silencing of FUT1 or FUT2 suppressed cell migration in wound healing assay, whereas FUT1 and FUT2 overexpression increased cell migration and invasion in vitro and metastasis of breast cancer in vivo. A decrease in mesenchymal like markers such as fibronectin, vimentin, and twist, along with increased epithelial like marker, E-cadherin, was observed upon FUT1/2 knockdown, while the opposite was noted by overexpression of FUT1 or FUT2. As expected, FUT1 or FUT2 knockdown reduced Globo H, whereas FUT1 or FUT2 overexpression showed contrary effects. Exogenous addition of Globo H-ceramide reversed the suppression of cell migration by FUT1 knockdown but not the inhibition of cell adhesion by FUT2 silencing, suggesting that at least part of the effects of FUT1/2 knockdown were mediated by Globo H. Our results imply that FUT1 and FUT2 play important roles in regulating growth, adhesion, migration and CSC properties of breast cancer, and may serve as therapeutic targets for breast cancer.
The evolution of skyrmions in Ir/Fe/Co/Pt multilayers and their topological Hall signature
Authors: Raju M. , Yagil A. , Soumyanarayanan Anjan , Tan Anthony K. C. , Almoalem A. , Ma Fusheng , Auslaender O. M. , Panagopoulos C.
Published: March 2019

The topological Hall effect (THE) is the Hall response to an emergent magnetic field, a manifestation of the skyrmion Berry-phase. As the magnitude of THE in magnetic multilayers is an open question, it is imperative to develop comprehensive understanding of skyrmions and other chiral textures, and their electrical fingerprint. Here, using Hall-transport and magnetic-imaging in a technologically viable multilayer film, we show that topological-Hall resistivity scales with the isolated-skyrmion density over a wide range of temperature and magnetic-field, confirming the impact of the skyrmion Berry-phase on electronic transport. While we establish qualitative agreement between the topological-Hall resistivity and the topological-charge density, our quantitative analysis shows much larger topological-Hall resistivity than the prevailing theory predicts for the observed skyrmion density. Our results are fundamental for the skyrmion-THE in multilayers, where interfacial interactions, multiband transport and non-adiabatic effects play an important role, and for skyrmion applications relying on THE.
Radical transformation pathway towards sustainable electricity via evolutionary steps
Authors: Bogdanov Dmitrii , Farfan Javier , Sadovskaia Kristina , Aghahosseini Arman , Child Michael , Gulagi Ashish , Oyewo Ayobami Solomon , de Souza Noel Simas Barbosa Larissa , Breyer Christian
Published: March 2019

A transition towards long-term sustainability in global energy systems based on renewable energy resources can mitigate several growing threats to human society simultaneously: greenhouse gas emissions, human-induced climate deviations, and the exceeding of critical planetary boundaries. However, the optimal structure of future systems and potential transition pathways are still open questions. This research describes a global, 100% renewable electricity system, which can be achieved by 2050, and the steps required to enable a realistic transition that prevents societal disruption. Modelling results show that a carbon neutral electricity system can be built in all regions of the world in an economically feasible manner. This radical transformation will require steady but evolutionary changes for the next 35 years, and will lead to sustainable and affordable power supply globally.
Resource sharing in technologically defined social networks
Authors: Shirado Hirokazu , Iosifidis George , Tassiulas Leandros , Christakis Nicholas A.
Published: March 2019

Technologically enabled sharing-economy networks are changing the way humans trade and collaborate. Here, using a novel ‘Wi-Fi sharing’ game, we explored determinants of human sharing strategy. Subjects (N = 1,950) participated in a networked game in which they could choose how to allocate a limited, but personally not usable, resource (representing unused Wi-Fi bandwidth) to immediate network neighbors. We first embeddedN = 600 subjects into 30 networks, experimentally manipulating the range over which subjects could connect. We find that denser networks decrease any wealth inequality, but that this effect saturates. Individuals’ benefit is shaped by their network position, with having many partners who in turn have few partners being especially beneficial. We propose a new, simplified “sharing centrality” metric for quantifying this. Further experiments (N = 1,200) confirm the robustness of the effect of network structure on sharing behavior. Our findings suggest the possibility of interventions to help more evenly distribute shared resources over networks.
Rapid active zone remodeling consolidates presynaptic potentiation
Authors: Böhme Mathias A. , McCarthy Anthony W. , Grasskamp Andreas T. , Beuschel Christine B. , Goel Pragya , Jusyte Meida , Laber Desiree , Huang Sheng , Rey Ulises , Petzoldt Astrid G. , Lehmann Martin , Göttfert Fabian , Haghighi Pejmun , Hell Stefan W. , Owald David , Dickman Dion , Sigrist Stephan J. , Walter Alexander M.
Published: March 2019

Neuronal communication across synapses relies on neurotransmitter release from presynaptic active zones (AZs) followed by postsynaptic transmitter detection. Synaptic plasticity homeostatically maintains functionality during perturbations and enables memory formation. Postsynaptic plasticity targets neurotransmitter receptors, but presynaptic mechanisms regulating the neurotransmitter release apparatus remain largely enigmatic. By studying Drosophila neuromuscular junctions (NMJs) we show that AZs consist of nano-modular release sites and identify a molecular sequence that adds modules within minutes of inducing homeostatic plasticity. This requires cognate transport machinery and specific AZ-scaffolding proteins. Structural remodeling is not required for immediate potentiation of neurotransmitter release, but necessary to sustain potentiation over longer timescales. Finally, mutations in Unc13 disrupting homeostatic plasticity at the NMJ also impair short-term memory when central neurons are targeted, suggesting that both plasticity mechanisms utilize Unc13. Together, while immediate synaptic potentiation capitalizes on available material, it triggers the coincident incorporation of modular release sites to consolidate synaptic potentiation.
Genetic dissection of Nodal and Bmp signalling requirements during primordial germ cell development in mouse
Authors: Senft Anna D. , Bikoff Elizabeth K. , Robertson Elizabeth J. , Costello Ita
Published: March 2019

The essential roles played by Nodal and Bmp signalling during early mouse development have been extensively documented. Here we use conditional deletion strategies to investigate functional contributions made by Nodal, Bmp and Smad downstream effectors during primordial germ cell (PGC) development. We demonstrate that Nodal and its target gene Eomes provide early instructions during formation of the PGC lineage. We discover that Smad2 inactivation in the visceral endoderm results in increased numbers of PGCs due to an expansion of the PGC niche. Smad1 is required for specification, whereas in contrast Smad4 controls the maintenance and migration of PGCs. Additionally we find that beside Blimp1, down-regulated phospho-Smad159 levels also distinguishes PGCs from their somatic neighbours so that emerging PGCs become refractory to Bmp signalling that otherwise promotes mesodermal development in the posterior epiblast. Thus balanced Nodal/Bmp signalling cues regulate germ cell versus somatic cell fate decisions in the early posterior epiblast.
Znhit1 controls intestinal stem cell maintenance by regulating H2A.Z incorporation
Authors: Zhao Bing , Chen Ying , Jiang Ning , Yang Li , Sun Shenfei , Zhang Yan , Wen Zengqi , Ray Lorraine , Liu Han , Hou Guoli , Lin Xinhua
Published: March 2019

Lgr5+ stem cells are crucial to gut epithelium homeostasis; however, how these cells are maintained is not fully understood. Zinc finger HIT-type containing 1 (Znhit1) is an evolutionarily conserved subunit of the SRCAP chromosome remodeling complex. Currently, the function of Znhit1 in vivo and its working mechanism in the SRCAP complex are unknown. Here we show that deletion of Znhit1 in intestinal epithelium depletes Lgr5+ stem cells thus disrupts intestinal homeostasis postnatal establishment and maintenance. Mechanistically, Znhit1 incorporates histone variant H2A.Z into TSS region of genes involved in Lgr5+ stem cell fate determination, including Lgr5, Tgfb1 and Tgfbr2, for subsequent transcriptional regulation. Importantly, Znhit1 promotes the interaction between H2A.Z and YL1 (H2A.Z chaperone) by controlling YL1 phosphorylation. These results demonstrate that Znhit1/H2A.Z is essential for Lgr5+ stem cell maintenance and intestinal homeostasis. Our findings identified a dominant role of Znhit1/H2A.Z in controlling mammalian organ development and tissue homeostasis in vivo.
Unlocking the potential of weberite-type metal fluorides in electrochemical energy storage
Authors: Euchner Holger , Clemens Oliver , Reddy M. Anji
Published: March 2019

Sodium-ion batteries (NIBs) are a front-runner among the alternative battery technologies suggested for substituting the state-of-the-art lithium-ion batteries (LIBs). The specific energy of Na-ion batteries is significantly lower than that of LIBs, which is mainly due to the lower operating potentials and higher molecular weight of sodium insertion cathode materials. To compete with the high energy density of LIBs, high voltage cathode materials are required for NIBs. Here we report a theoretical investigation on weberite-type sodium metal fluorides (SMFs), a new class of high voltage and high energy density materials which are so far unexplored as cathode materials for NIBs. The weberite structure type is highly favorable for sodium-containing transition metal fluorides, with a large variety of transition metal combinations (M, M’) adopting the corresponding Na2MM’F7 structure. A series of known and hypothetical compounds with weberite-type structure were computationally investigated to evaluate their potential as cathode materials for NIBs. Weberite-type SMFs show two-dimensional pathways for Na+ diffusion with surprisingly low activation barriers. The high energy density combined with low diffusion barriers for Na+ makes this type of compounds promising candidates for cathode materials in NIBs.
Orbital magneto-optical response of periodic insulators from first principles
Authors: Lebedeva Irina V. , Strubbe David A. , Tokatly Ilya V. , Rubio Angel
Published: March 2019

Magneto-optical response, i.e. optical response in the presence of a magnetic field, is commonly used for characterization of materials and in optical communications. However, quantum mechanical description of electric and magnetic fields in crystals is not straightforward as the position operator is ill defined. We present a reformulation of the density matrix perturbation theory for time-dependent electromagnetic fields under periodic boundary conditions, which allows us to treat the orbital magneto-optical response of solids at the ab initio level. The efficiency of the computational scheme proposed is comparable to standard linear-response calculations of absorption spectra and the results of tests for molecules and solids agree with the available experimental data. A clear signature of the valley Zeeman effect is revealed in the continuum magneto-optical spectrum of a single layer of hexagonal boron nitride. The present formalism opens the path towards the study of magneto-optical effects in strongly driven low-dimensional systems.
The gravity dependence of pharmacodynamics: the integration of lidocaine into membranes in microgravity
Authors: Kohn Florian P. M. , Hauslage Jens
Published: March 2019

To realize long-term manned space missions, e.g. to Mars, some important questions about pharmacology under conditions of different gravity will have to be answered to ensure safe usage of pharmaceuticals. Experiments on the International Space Station showed that the pharmacokinetics of drugs are changed in microgravity. On Earth, it is well known that the incorporation of substances into cellular membranes depends on membrane fluidity, therefore the finding that membrane fluidity is gravity dependent possibly has effects on pharmacodynamics of hydrophobic and amphiphilic substances in microgravity. To validate a possible effect of gravity on pharmacodynamics, experiments have been carried out to investigate the incorporation of lidocaine into plain lipid membranes under microgravity conditions. In microgravity, the induced increase in membrane fluidity associated with lidocaine incorporation is smaller compared to 1g controls. This experiment concerning the gravity dependence of pharmacodynamics in real microgravity clearly shows that the incorporation of amphipathic drugs into membranes is changed in microgravity. This might have significant impact on the pharmacology of drugs during long-term space missions and has to be investigated in more detail to be able to assess possible risks.
Publisher Correction: Synergistic interaction of sprouting and intussusceptive angiogenesis during zebrafish caudal vein plexus development
Authors: Karthik Swapna , Djukic Tijana , Kim Jun-Dae , Zuber Benoît , Makanya Andrew , Odriozola Adolfo , Hlushchuk Ruslan , Filipovic Nenad , Jin Suk Won , Djonov Valentin
Published: March 2019

A correction to this article has been published and is linked from the HTML and PDF versions of this paper. The error has been fixed in the paper.
Author Correction: Development and inter-laboratory assessment of droplet digital PCR assays for multiplex quantification of 15 genetically modified soybean lines
Authors: Košir Alexandra Bogožalec , Spilsberg Bjørn , Holst-Jensen Arne , Žel Jana , Dobnik David
Published: March 2019

A correction to this article has been published and is linked from the HTML and PDF versions of this paper. The error has not been fixed in the paper.
Continuous targeted kinase inhibitors treatment induces upregulation of PD-L1 in resistant NSCLC
Authors: Jiang Li , Guo Fuchun , Liu Xiaoke , Li Xiaoyu , Qin Qing , Shu Pei , Li Yi , Wang Yongsheng
Published: March 2019

First-generation epidermal growth factor receptor (EGFR) targeted kinase inhibitors (TKIs) are still used in selected non-small cell lung cancer (NSCLC) patients despite the resistance. Based on the correlation of programmed cell death receptor ligand 1 (PD-L1) and EGFR signaling pathway, whether continuous TKIs treatment will affect PD-L1 expression after disease progression remains unclear. To investigate the potential change of PD-L1 expression in TKI-resistant NSCLC after continuous TKIs treatment, we treated H1975 and HCC827 for more than one month and explored the possible effect on immune cells as well as underlying biological mechanisms. We found that continuous exposure to TKIs induced upregulation of PD-L1 in H1975 and HCC827. Moreover, PD-L1 upregulation significantly inhibited proliferation and slightly promoted apoptosis of T cells. We observed the activation of STAT3 and ERK1/2 along with the PD-L1 upregulation. With the pathway inhibitors, we found ERK1/2 pathway involved in inducing PD-L1 in resistant lung cancer. This study provides preclinical evidence that continuous TKIs treatment may induce PD-L1 expression in resistant NSCLC, resulting in the suppression of T cell function and immune escape. ERK1/2 pathway inhibitors, PD-L1/PD-1 inhibitors or combination strategies should be considered to reverse the resistance to TKIs in NSCLC patients.
Grasping movements toward seen and handheld objects
Authors: Camponogara Ivan , Volcic Robert
Published: March 2019

Grasping movements are typically performed toward visually sensed objects. However, planning and execution of grasping movements can be supported also by haptic information when we grasp objects held in the other hand. In the present study we investigated this sensorimotor integration process by comparing grasping movements towards objects sensed through visual, haptic or visuo-haptic signals. When movements were based on haptic information only, hand preshaping was initiated earlier, the digits closed on the object more slowly, and the final phase was more cautious compared to movements based on only visual information. Importantly, the simultaneous availability of vision and haptics led to faster movements and to an overall decrease of the grip aperture. Our findings also show that each modality contributes to a different extent in different phases of the movement, with haptics being more crucial in the initial phases and vision being more important for the final on-line control. Thus, vision and haptics can be flexibly combined to optimize the execution of grasping movement.
Prevention of EloR/KhpA heterodimerization by introduction of site-specific amino acid substitutions renders the essential elongasome protein PBP2b redundant in Streptococcus pneumoniae
Authors: Winther Anja Ruud , Kjos Morten , Stamsås Gro Anita , Håvarstein Leiv Sigve , Straume Daniel
Published: March 2019

The RNA binding proteins EloR and KhpA are important components of the regulatory network that controls and coordinates cell elongation and division in S. pneumoniae. Loss of either protein reduces cell length, and makes the essential elongasome proteins PBP2b and RodA dispensable. It has been shown previously in formaldehyde crosslinking experiments that EloR co-precipitates with KhpA, indicating that they form a complex in vivo. In the present study, we used 3D modeling and site directed mutagenesis in combination with protein crosslinking to further study the relationship between EloR and KhpA. Protein-protein interaction studies demonstrated that KhpA forms homodimers and that KhpA in addition binds to the KH-II domain of EloR. Site directed mutagenesis identified isoleucine 61 (I61) as crucial for KhpA homodimerization. When substituting I61 with phenylalanine, KhpA lost the ability to homodimerize, while it still interacted clearly with EloR. In contrast, both homo- and heterodimerization were lost when I61 was substituted with tyrosine. By expressing these KhpA versions in S. pneumoniae, we were able to show that disruption of EloR/KhpA heterodimerization makes the elongasome redundant in S. pneumoniae. Of note, loss of KhpA homodimerization did not give rise to this phenotype, demonstrating that the EloR/KhpA complex is crucial for regulating the activity of the elongasome. In support of this conclusion, we found that localization of KhpA to the pneumococcal mid-cell region depends on its interaction with EloR. Furthermore, we found that the EloR/KhpA complex co-localizes with FtsZ throughout the cell cycle.
Climate change drives trait-shifts in coral reef communities
Authors: Kubicek Andreas , Breckling Broder , Hoegh-Guldberg Ove , Reuter Hauke
Published: March 2019

Climate change is expected to have profound, partly unforeseeable effects on the composition of functional traits of complex ecosystems, such as coral reefs, and some ecosystem properties are at risk of disappearing. This study applies a novel spatially explicit, individual-based model to explore three critical life history traits of corals: heat tolerance, competitiveness and growth performance under various environmental settings. Building upon these findings, we test the adaptation potential required by a coral community in order to not only survive but also retain its diversity by the end of this century under different IPCC climate scenarios. Even under the most favourable IPCC scenario (Representative Concentration Pathway, RCP 2.6), model results indicate that shifts in the trait space are likely and coral communities will mainly consist of small numbers of temperature-tolerant and fast-growing species. Species composition of coral communities is likely to be determined by heat tolerance, with competitiveness most likely playing a subordinate role. To sustain ~15% of current coral cover under a 2 °C temperature increase by the end of the century (RCP 4.5), coral systems would have to accommodate temperature increases of 0.1–0.15 °C per decade, assuming that periodic extreme thermal events occurred every 8 years. These required adaptation rates are unprecedented and unlikely, given corals’ life-history characteristics.
Characterization, mechanism of action and optimization of activity of a novel peptide-peptoid hybrid against bacterial pathogens involved in canine skin infections
Authors: Greco Ines , Emborg Agnete Plahn , Jana Bimal , Molchanova Natalia , Oddo Alberto , Damborg Peter , Guardabassi Luca , Hansen Paul R.
Published: March 2019

Integumentary infections like pyoderma represent the main reason for antimicrobial prescription in dogs. Staphylococcus pseudintermedius and Pseudomonas aeruginosa are frequently identified in these infections, and both bacteria are challenging to combat due to resistance. To avoid use of important human antibiotics for treatment of animal infections there is a pressing need for novel narrow-spectrum antimicrobial agents in veterinary medicine. Herein, we characterize the in vitro activity of the novel peptide-peptoid hybrid B1 against canine isolates of S. pseudintermedius and P. aeruginosa. B1 showed potent minimum inhibitory concentrations (MICs) against canine S. pseudintermedius and P. aeruginosa isolates as well rapid killing kinetics. B1 was found to disrupt the membrane integrity and affect cell-wall synthesis in methicillin-resistant S. pseudintermedius (MRSP). We generated 28 analogues of B1, showing comparable haemolysis and MICs against MRSP and P. aeruginosa. The most active analogues (23, 26) and B1 were tested against a collection of clinical isolates from canine, of which only B1 showed potent activity. Our best compound 26, displayed activity against P. aeruginosa and S. pseudintermedius, but not the closely related S. aureus. This work shows that design of target-specific veterinary antimicrobial agents is possible, even species within a genus, and deserves further exploration.
Early overnutrition reduces Pdx1 expression and induces β cell failure in Swiss Webster mice
Authors: Glavas Maria M. , Hui Queenie , Tudurí Eva , Erener Suheda , Kasteel Naomi L. , Johnson James D. , Kieffer Timothy J.
Published: March 2019

Childhood obesity and early rapid growth increase the risk for type 2 diabetes. Such early overnutrition can be modeled in mice by reducing litter size. We investigated the effects of early overnutrition and increased dietary fat intake on β cell function in Swiss Webster mice. On a moderate-fat diet, early overnutrition accelerated weight gain and induced hyperinsulinemia in pups. Early overnutrition males exhibited higher β cell mass but reduced islet insulin content and Pdx1 expression. Males had a high diabetes incidence that was increased by early overnutrition, characterized by a progressive increase in insulin secretion as well as β cell death, indicated by histological analysis and increased circulating miR-375 levels. Females maintained normoglycemia throughout life. High-fat diet (HFD) increased diabetes incidence in males, whereas low-fat diet was completely protective. This protective effect was abolished in early overnutrition males transiently exposed to HFD in early life. Although Swiss Webster mice are not known to be diabetes-prone, the high diabetes incidence suggests an underlying genetic susceptibility that can be induced by overnutrition and increased dietary fat intake in early life. Thus, the nutritional environment in early life may impact long-term β cell function and increase diabetes risk, particularly in genetically susceptible individuals.
A method of predicting the in vitro fibril formation propensity of Aβ40 mutants based on their inclusion body levels in E. coli
Authors: Sanagavarapu Kalyani , Nüske Elisabeth , Nasir Irem , Meisl Georg , Immink Jasper N. , Sormanni Pietro , Vendruscolo Michele , Knowles Tuomas P. J. , Malmendal Anders , Cabaleiro-Lago Celia , Linse Sara
Published: March 2019

Overexpression of recombinant proteins in bacteria may lead to their aggregation and deposition in inclusion bodies. Since the conformational properties of proteins in inclusion bodies exhibit many of the characteristics typical of amyloid fibrils. Based on these findings, we hypothesize that the rate at which proteins form amyloid fibrils may be predicted from their propensity to form inclusion bodies. To establish a method based on this concept, we first measured by SDS-PAGE and confocal microscopy the level of inclusion bodies in E. coli cells overexpressing the 40-residue amyloid-beta peptide, Aβ40, wild-type and 24 charge mutants. We then compared these results with a number of existing computational aggregation propensity predictors as well as the rates of aggregation measured in vitro for selected mutants. Our results show a strong correlation between the level of inclusion body formation and aggregation propensity, thus demonstrating the power of this approach and its value in identifying factors modulating aggregation kinetics.
Interaction-disorder-driven characteristic momentum in graphene, approach of multi-body distribution functions
Authors: Najafi M. N.
Published: March 2019

Multi-point probability measures along with the dielectric function of Dirac Fermions in mono-layer graphene containing particle-particle and white-noise (out-plane) disorder interactions on an equal footing in the Thomas-Fermi-Dirac approximation is investigated. By calculating the one-body carrier density probability measure of the graphene sheet, we show that the density fluctuation (ζ−1) is related to the disorder strength (ni), the interaction parameter (rs) and the average density ($$\bar{{\boldsymbol{n}}}$$

n
¯

) via the relation $${{\boldsymbol{\zeta }}}^{-{\bf{1}}}{\boldsymbol{\propto }}{{\boldsymbol{r}}}_{{\boldsymbol{s}}}{{\boldsymbol{n}}}_{{\boldsymbol{i}}}^{{\bf{2}}}{\bar{{\boldsymbol{n}}}}^{-{\bf{1}}}$$

ζ

−
1

∝

r

s

n

i

2

n
¯

−
1

for which $$\bar{{\boldsymbol{n}}}\to {\bf{0}}$$

n
¯

→
0
leads to strong density inhomogeneities, i.e. electron-hole puddles (EHPs), in agreement with the previous works. The general equation governing the two-body distribution probability is obtained and analyzed. We present the analytical solution for some limits which is used for calculating density-density response function. We show that the resulting function shows power-law behaviors in terms of ζ with fractional exponents which are reported. The disorder-averaged polarization operator is shown to be a decreasing function of momentum like ordinary 2D parabolic band systems. It is seen that a disorder-driven momentum qch emerges in the system which controls the behaviors of the screened potential. We show that in small densities an instability occurs in which imaginary part of the dielectric function becomes negative and the screened potential changes sign. Corresponding to this instability, some oscillations in charge density along with a screening-anti-screening transition are observed. These effects become dominant in very low densities, strong disorders and strong interactions, the state in which EHPs appear. The total charge probability measure is another quantity which has been investigated in this paper. The resulting equation is analytically solved for large carrier densities, which admits the calculation of arbitrary-point correlation function.
Statistics of thermomagnetic breakdown in Nb superconducting films
Authors: Blanco Alvarez S. , Brisbois J. , Melinte S. , Kramer R. B. G. , Silhanek A. V.
Published: March 2019

Superconductors are well known for their ability to screen out magnetic fields. In type-II superconductors, as the magnetic field pressure is progressively increased, magnetic flux accumulates at the periphery of the sample, very much like charges accumulate in a capacitor when voltage is increased. As for capacitors, exceeding certain threshold field causes the blocked magnetic flux to abruptly penetrate into the sample. This phenomenon, triggered by a thermomagnetic instability, is somewhat analogous to the dielectric breakdown of the capacitor and leaves behind a similar Lichtenberg imprinting. Even though electrical breakdown threshold has been extensively studied in dielectrics, little information is known about the statistical distribution of the thermomagnetic breakdown in superconductors. In this work, we address this problem by performing magneto-optical imaging experiments on a Nb film where nanometric heating elements are used to rapidly erase the magnetic history of the sample. We demonstrate that the size and shape distributions of avalanches permits to unambiguously identify the transition between two regimes where either thermal diffusivity or magnetic diffusivity dominates. Clear criteria for discriminating athermal dynamic avalanches from thermally driven avalanches are introduced. This allows us to provide the first precise determination of the threshold field of the thermomagnetic breakdown and unveil the details of the transition from finger-like magnetic burst to dendritic branching morphology. These findings open a new avenue in the interdisciplinary exploration of catastrophic avalanches through non destructive repeatable experiments.
Temporal variability of diazotroph community composition in the upwelling region off NW Iberia
Authors: Moreira-Coello Víctor , Mouriño-Carballido Beatriz , Marañón Emilio , Fernández-Carrera Ana , Bode Antonio , Sintes Eva , Zehr Jonathan P. , Turk-Kubo Kendra , Varela Marta M.
Published: March 2019

Knowledge of the ecology of N2-fixing (diazotrophic) plankton is mainly limited to oligotrophic (sub)tropical oceans. However, diazotrophs are widely distributed and active throughout the global ocean. Likewise, relatively little is known about the temporal dynamics of diazotrophs in productive areas. Between February 2014 and December 2015, we carried out 9 one-day samplings in the temperate northwestern Iberian upwelling system to investigate the temporal and vertical variability of the diazotrophic community and its relationship with hydrodynamic forcing. In downwelling conditions, characterized by deeper mixed layers and a homogeneous water column, non-cyanobacterial diazotrophs belonging mainly to nifH clusters 1G (Gammaproteobacteria) and 3 (putative anaerobes) dominated the diazotrophic community. In upwelling and relaxation conditions, affected by enhanced vertical stratification and hydrographic variability, the community was more heterogeneous vertically but less diverse, with prevalence of UCYN-A (unicellular cyanobacteria, subcluster 1B) and non-cyanobacterial diazotrophs from clusters 1G and 3. Oligotyping analysis of UCYN-A phylotype showed that UCYN-A2 sublineage was the most abundant (74%), followed by UCYN-A1 (23%) and UCYN-A4 (2%). UCYN-A1 oligotypes exhibited relatively low frequencies during the three hydrographic conditions, whereas UCYN-A2 showed higher abundances during upwelling and relaxation. Our findings show the presence of a diverse and temporally variable diazotrophic community driven by hydrodynamic forcing in an upwelling system.
Evolutionary constraints on the complexity of genetic regulatory networks allow predictions of the total number of genetic interactions
Authors: Campos Adrian I. , Freyre-González Julio A.
Published: March 2019

Genetic regulatory networks (GRNs) have been widely studied, yet there is a lack of understanding with regards to the final size and properties of these networks, mainly due to no network currently being complete. In this study, we analyzed the distribution of GRN structural properties across a large set of distinct prokaryotic organisms and found a set of constrained characteristics such as network density and number of regulators. Our results allowed us to estimate the number of interactions that complete networks would have, a valuable insight that could aid in the daunting task of network curation, prediction, and validation. Using state-of-the-art statistical approaches, we also provided new evidence to settle a previously stated controversy that raised the possibility of complete biological networks being random and therefore attributing the observed scale-free properties to an artifact emerging from the sampling process during network discovery. Furthermore, we identified a set of properties that enabled us to assess the consistency of the connectivity distribution for various GRNs against different alternative statistical distributions. Our results favor the hypothesis that highly connected nodes (hubs) are not a consequence of network incompleteness. Finally, an interaction coverage computed for the GRNs as a proxy for completeness revealed that high-throughput based reconstructions of GRNs could yield biased networks with a low average clustering coefficient, showing that classical targeted discovery of interactions is still needed.
Self-organized criticality in geophysical turbulence
Authors: Smyth W. D. , Nash J. D. , Moum J. N.
Published: March 2019

Turbulence in geophysical flows tends to organize itself so that the mean flow remains close to a stability boundary in parameter space. That characteristic suggests self-organized criticality (SOC), a statistical property that has been identified in a range of complex phenomena including earthquakes, forest fires and solar flares. This note explores the relationship between the properties of forced, sheared, stratified turbulence (as found in oceans, atmospheres and other geophysical fluids) and those of SOC. Self-organization to the critical state is demonstrated in a wide range of cases drawn mostly (but not entirely) from in situ observations of ocean turbulence. Turbulent events in the ocean also exhibit a second characteristic associated with SOC: their sizes follow a power-law distribution indicating self-similarity. These results suggest SOC as a new conceptual foundation for the study of geophysical turbulence, an explanation for the mixing efficiency of ocean turbulence and a potential for cross-fertilization with other areas of geophysics.
Voltage-induced strain clocking of nanomagnets with perpendicular magnetic anisotropies
Authors: Wang Qianchang , Hu Jin-Zhao , Liang Cheng-Yen , Sepulveda Abdon , Carman Greg
Published: March 2019

Nanomagnetic logic (NML) has attracted attention during the last two decades due to its promise of high energy efficiency combined with non-volatility. Data transmission in NML relies on Bennett clocking through dipole interaction between neighboring nanomagnetic bits. This paper uses a fully coupled finite element model to simulate Bennett clocking based on strain-mediated multiferroic system for Ni, CoFeB and Terfenol-D with perpendicular magnetic anisotropies. Simulation results demonstrate that Terfenol-D system has the highest energy efficiency, which is 2 orders of magnitude more efficient than Ni and CoFeB. However, the high efficiency is associated with switching incoherency due to its large magnetostriction coefficient. It is also suggested that the CoFeB clocking system has lower bit-density than in Ni or Terfenol-D systems due to its large dipole coupling. Moreover, we demonstrate that the precessional perpendicular switching and the Bennett clocking can be achieved using the same strain-mediated multiferroic architecture with different voltage pulsing. This study opens new possibilities to an all-spin in-memory computing system.
Identification of Novel Inhibitors of DLK Palmitoylation and Signaling by High Content Screening
Authors: Martin Dale D. O. , Kanuparthi Prasad S. , Holland Sabrina M. , Sanders Shaun S. , Jeong Hey-Kyeong , Einarson Margret B. , Jacobson Marlene A. , Thomas Gareth M.
Published: March 2019

After axonal insult and injury, Dual leucine-zipper kinase (DLK) conveys retrograde pro-degenerative signals to neuronal cell bodies via its downstream target c-Jun N-terminal kinase (JNK). We recently reported that such signals critically require modification of DLK by the fatty acid palmitate, via a process called palmitoylation. Compounds that inhibit DLK palmitoylation could thus reduce neurodegeneration, but identifying such inhibitors requires a suitable assay. Here we report that DLK subcellular localization in non-neuronal cells is highly palmitoylation-dependent and can thus serve as a proxy readout to identify inhibitors of DLK palmitoylation by High Content Screening (HCS). We optimized an HCS assay based on this readout, which showed highly robust performance in a 96-well format. Using this assay we screened a library of 1200 FDA-approved compounds and found that ketoconazole, the compound that most dramatically affected DLK localization in our primary screen, dose-dependently inhibited DLK palmitoylation in follow-up biochemical assays. Moreover, ketoconazole significantly blunted phosphorylation of c-Jun in primary sensory neurons subjected to trophic deprivation, a well known model of DLK-dependent pro-degenerative signaling. Our HCS platform is thus capable of identifying novel inhibitors of DLK palmitoylation and signalling that may have considerable therapeutic potential.
Distal interphalangeal joint extensor tendon enthesopathy in patients with nail psoriasis
Authors: Krajewska-Włodarczyk Magdalena , Owczarczyk-Saczonek Agnieszka , Placek Waldemar , Wojtkiewicz Maja , Wiktorowicz Andrzej , Wojtkiewicz Joanna
Published: March 2019

The aim of the study was an ultrasound assessment of distal interphalangeal (DIP) joint enthesopathy in patients with nail psoriasis. Altogether, 72 patients with nail psoriasis (41 with psoriasis and 31 with psoriatic arthritis) and 30 people in the control group participated in the study. In total, 1014 nails were examined. The thickness of DIP digital extensor tendons in the groups of patients with psoriasis (Ps) and psoriatic arthritis (PsA) was correlated with the nail bed thickness (r = 0.316, p = 0.027 vs. r = 0.402, p = 0.031, respectively) and with the thickness of the nail matrix in patients with psoriasis (r = 0.421, p = 0.012). The linear regression model showed the tendon thickness in Ps patients to be affected by the nail bed thickness, duration of psoriasis and the thickness of the nail matrix, whereas in PsA patients it was found to be significantly affected by duration of psoriasis and of arthritis, the nail bed thickness, CRP concentration and the swollen joint count. Our findings may indicate the role of the nail-tendon apparatus changes in the PsA development and they emphasise the justifiability of US examinations in patients with psoriasis direct assessment of morphological changes in nails as potential predictors of PsA development.
Severe wildfire exposes remnant peat carbon stocks to increased post-fire drying
Authors: Kettridge N. , Lukenbach M. C. , Hokanson K. J. , Devito K. J. , Petrone R. M. , Mendoza C. A. , Waddington J. M.
Published: March 2019

The potential of high severity wildfires to increase global terrestrial carbon emissions and exacerbate future climatic warming is of international concern. Nowhere is this more prevalent than within high latitude regions where peatlands have, over millennia, accumulated legacy carbon stocks comparable to all human CO2 emissions since the beginning of the industrial revolution. Drying increases rates of peat decomposition and associated atmospheric and aquatic carbon emissions. The degree to which severe wildfires enhance drying under future climates and induce instability in peatland ecological communities and carbon stocks is unknown. Here we show that high burn severities increased post-fire evapotranspiration by 410% within a feather moss peatland by burning through the protective capping layer that restricts evaporative drying in response to low severity burns. High burn severities projected under future climates will therefore leave peatlands that dominate dry sub-humid regions across the boreal, on the edge of their climatic envelopes, more vulnerable to intense post-fire drying, inducing high rates of carbon loss to the atmosphere that amplify the direct combustion emissions.
Improving maize grain yield by matching maize growth and solar radiation
Authors: Yang Yunshan , Xu Wenjuan , Hou Peng , Liu Guangzhou , Liu Wanmao , Wang Yonghong , Zhao Rulang , Ming Bo , Xie Ruizhi , Wang Keru , Li Shaokun
Published: March 2019

Matching of maize growth with solar radiation is of great importance for achieving high yield. We conducted experiments using different maize cultivars and planting densities under different solar radiations during grain filling to quantitatively analyze the relationships among these factors. We found that a decrease in solar radiation after silking caused a drop in maize grain yield and biomass, with lower solar radiation intensities leading to worse grain yields and biomass. Cultivar ZD958 was more sensitive to solar radiation changes than cultivar XY335; slight decreases in solar radiation (i.e., 15% shading) caused significant declines in ZD958 grain yield. When total solar radiation during grain filling was less than 486.9 MJ m−2 for XY335 and less than 510.9 MJ m−2 for ZD958, the two cultivars demonstrated high yields at lower planting density of 7.5 × 104 plants ha−1; average yields were 13.36 and 11.09 Mg ha−1, respectively. When radiation intensities were higher than 549.5 MJ m−2 for XY335 and higher than 605.8 MJ m−2 for ZD958, yields were higher at a higher planting density of 12 × 104 plants ha−1, with average yields of 20.58 Mg ha−1 for XY335 and 19.65 Mg ha−1 for ZD958.
A Novel Graphene Metal Semi-Insulator Semiconductor Transistor and Its New Super-Low Power Mechanism
Authors: Li Ping , Zeng R. Z. , Liao Y. B. , Zhang Q. W. , Zhou J. H.
Published: March 2019

The state-of-art Si Matel-Oxide-Semiconductor Field-Effect-Transistor (MOS-FET) meets the problem of the Power Consumption (PC) can not be effecively deceased guided by the Moore’s Law as before. The GFET has the problem of the device can not be effectively turned off, since the band-gap of the graphene is zero. To solve these problems, noticing the amount of the carriers in the 2 dementional semiconductor material is limited, we propose a Matel-Semi-Insulator-Semiconductor Field-Effect-Transistor (MSIS-FET) to replace the traditional MOS-FET. We verify our idea by fabricating the graphene MSIS-FETs using the natural Aluminium-oxide (Al-oxide) as the semi-insulator gate dielectric. From MSIS-FETs fabricated, we obtain following experimental results. The graphene MSIS-FET is turned off very well, a recorded high Ids on/off ratio of 5 × 107 is achieved. A saddle and close-loop shape transfer feature of Ids-Vgs is obtained first time for transistors. A non-volatile memory characteristics is observed. A carrier re-injection principle and a super-Low PC mechanism for semiconductor devices and integrated circuits (ICs) are found from the transfer feature of the graphene MSIS-FET. It is shown that the PC of the semiconductor devices and (ICs) can be reduced by over three orders of magnitude by using this new mechanism.
Coarsening Behavior of Particles in Fe-O-Al-Ca Melts
Authors: Wang Linzhu , Li Junqi , Yang Shufeng , Chen Chaoyi , Jin Huixin , Li Xiang
Published: March 2019

The characteristics of particles greatly affect the microstructure and performance of metallic materials, especially their sizes. To provide insight into coarsening phenomena of particles in metallic melts, Fe-O-Al-Ca melt with calcium aluminate particles was selected as a model system. This study uses HT-CSLM, SEM detections and stereological analysis to probe the behavior of particles and their characteristics including size, number density, volume fraction, spreading of particle size, inter-surface distance and distribution of particles. Based on the experimental evidence and calculation of collision, we demonstrate that the coarsening of inclusion particles is not only dependent on the Ostwald growth as studied in previous study, but also on the particle coagulation, and floatation. The collision of particles affects the maximum size of the particles during whole deoxidation process and dominates the coarsening of particles at later stage of deoxidation under the condition without external stirring in Fe-O-Al-Ca melts. The factors influencing collision behaviors and floating properties were also analyzed, which is corresponding to coarsening behavior and change of particle characteristic in the melts with different amounts of Ca addition. Such coarsening mechanism may also be useful in predicting the size of particles in other metallic materials.