bluuebunny/crossref_metadata_2025 huggingface dataset:
Biochar and Compost-Based Integrated Nutrient Management: Potential for Carbon and Microbial Enrichment in Degraded Acidic and Charland Soils
Authors: Rahman M. M. , Islam Md. Rafiqul , Uddin Shihab , Rahman Mohammad Mahmudur , Gaber Ahmed , Abdelhadi Abdelhadi A. , Jahangir M. M. R.
Published: January 2022

Soil acidification and charland formation through alluvial sand deposition are emerging threats to food security in Bangladesh in that they endanger crop production in about 35% of its territory. The integrated plant nutrient system (IPNS) is a globally accepted nutrient management approach designed to revive the damaged soils’ fertility level. Total organic carbon (TOC) in soil is a composite index of soil quality that has consequences for agricultural productivity and natural soil ecosystems. This study assesses the impacts of using biochar, compost, poultry litter, and vermicompost-based IPNS approaches on labile and TOC pools, TOC stocks, lability and management indices, and microbial populations under different cropping patterns after 2 years in acidic and charland soils. The application of IPNS treatments increased microbial biomass carbon (MBC) by 9.1–50.0% in acidic soil and 8.8–41.2% in charland soil compared to the untreated soil, with the largest increase in poultry manure biochar (PMB). Microbial biomass nitrogen (MBN) rose from 20 to 180% in charland soil compared to the control, although no effect was observed in acidic soil. Basal respiration (BR) rose by 43–429% in acidic soil and 16–189% in charland soil compared to the control, exhibiting the highest value in PMB. IPNS treatments significantly improved SOC and POC but did not affect POXc and bulk density in both soils. The PMB and organic fertilizer (OF, compost)-based IPNS wielded the greatest influence on the lability index of MBC in acidic soils and the management index of MBC in both soils. This is despite the fact that IPNS did not affect the lability and management indices of active carbon (AC). IPNS treatments increased the stocks of SOC and MBC in both the soils and POC stock in acidic soil. IPNS treatments significantly boosted the bacterial and fungal populations in both soils, despite having no effect on phosphorus-solubilizing bacteria (PSB). Thus, PMB and OF (compost)-based IPNS may be a better nutrient management practice in degraded acidic and charland soils. This is especially the case in terms of soil quality improvement, soil carbon sequestration, and microbial enrichment.
Effect of Thermal Hydrolysis Pretreatment on Anaerobic Digestion of Protein-Rich Biowaste: Process Performance and Microbial Community Structures Shift
Authors: Shi Jingyang , Zhang Guangyi , Zhang Hang , Qiao Fa , Fan Jie , Bai Dingrong , Xu Guangwen
Published: January 2022

To reveal the effects of thermal hydrolysis (TH) pretreatment (THPT) on anaerobic digestion (AD) of protein-rich substrates, discarded tofu was chosen as the object, and its batch AD tests of tofu before and after being subjected to TH at gradually increasing organic loads were carried out and the AD process characteristics were compared; furthermore, its continuous AD tests without and with THPT were also conducted and the difference of the microbial community structures was investigated. The results showed that, during AD of protein-rich tofu with increase in the organic load, inhibition from severe acidification prior to accumulation of ammonia nitrogen (AN) occurred. THPT helped overcome the acidification inhibition present in batch AD of tofu at such a high TS content of 3.6%, to obtain the maximum methane yield rate of 589.39 ml·(gVS)−1. Continuous AD of protein-rich tofu heavily depended on ammonia-tolerant hydrogenotrophic methanogens and bacteria. The continuous AD processes acclimated by HT substrates seemed to be resistant to severe organic loads, by boosting growth of ammonia-tolerant microorganisms, above all methylotrophic methanogens such as the genera RumEnM2 and methanomassiliicoccus. The process response of continuous AD of HT tofu was hysteretic, suggesting that a sufficiently long adaptation period was required for stabilizing the AD system.
Increasing Trends of Legacy and Emerging Organic Contaminants in a Dated Sediment Core From East-Africa
Authors: Nipen Maja , Vogt Rolf David , Bohlin-Nizzetto Pernilla , Borgå Katrine , Mwakalapa Eliezer Brown , Borgen Anders Røsrud , Schlabach Martin , Christensen Guttorm , Mmochi Aviti John , Breivik Knut
Published: January 2022

Temporal trends of industrial organic contaminants can show how environmental burdens respond to changes in production, regulation, and other anthropogenic and environmental factors. Numerous studies have documented such trends from the Northern Hemisphere, while there is very limited data in the literature from sub-Saharan Africa. We hypothesized that the temporal trends of legacy and contemporary industrial contaminants in sub-Saharan Africa could greatly differ from the regions in which many of these chemicals were initially produced and more extensively used. For this purpose, a dated sediment core covering six decades from a floodplain system in urban Dar es Salaam, Tanzania, was analysed. The samples were analysed for selected legacy persistent organic pollutants (POPs) [polychlorinated biphenyls (PCBs) and polybrominated biphenyl ethers (PBDEs)] and chemicals of emerging concern (CECs) [alternative brominated flame retardants (aBFRs), chlorinated paraffins (CPs), and dechloranes]. All groups of chemicals showed a steep increase in concentrations towards the uppermost sediment layers reflecting the more recent years. Concentrations of the individual compound groups in surface sediment were found in the order CPs >> aBFRs ∼ ∑25PBDEs > dechloranes ∼ ∑32PCBs. Time trends for the individual compounds and compound groups differed, with ∑32PCBs showing presence in sediments since at least the early 1960s, while some CECs first occurred in sediments corresponding to the last decade. Investigations into potential drivers for the observed trends showed that socioeconomic factors related to growth in population, economy, and waste generation have contributed to increasing concentrations of PBDEs, aBFRs, CPs, and Dechlorane Plus. Further monitoring of temporal trends of industrial organic contaminants in urban areas in the Global South is recommended.
Genetic and Social Transmission of Parental Sex Roles in Zebra Finch Families
Authors: Morvai Boglárka , Fazekas Emese Alexandra , Miklósi Ádám , Pogány Ákos
Published: January 2022

Parental care plays a central, reinforcing role in the evolution of sex roles and its development is often reported to be driven by genetic, rather than environmental effects. Based on these studies, however, genetic inheritance does not account fully for the often-significant phenotypic variability observed within species, a variation that we hypothesized may be explained by social effects from parents. Following a full cross-fostering design, here we aimed at disentangling genetic and social parental effects in the ontogeny of parental behaviours. Clutches of eggs were swapped, and we monitored parental behaviours in two consecutive generations of a captive population of the socially monogamous, biparental zebra finch (Taeniopygia guttata). Using nest box cameras, parental behaviour was recorded for 3 h in two reproductive stages: on day 8 of incubation and day 10 post-hatching. These fostered birds, after becoming fully matured, received a pair randomly and we observed parental care of this second generation too, following the same protocol. We then compared various parental behaviours (such as time spent incubating, or number of nest attendances during offspring provisioning) in the second generation to those of their genetic and social parents. Based on the results of our experiment, both genetic and social effects can contribute to intergenerational transmission of specific parental behaviours, with various weights. However, the strongest and most consistent effect that we found is that of the current mate; a social effect that can manifest both in negative and positive directions, depending on the behavioural trait. Our study suggests context-specific and sexually different genetic, social and non-social environmental effects in the ontogeny of parental sex roles and outline the importance of parental negotiation in explaining individual variation of parental behaviour in biparental species.
Evaluation of Association Studies and an Updated Meta-Analysis of VDR Polymorphisms in Osteoporotic Fracture Risk
Authors: Mu Yi-yang , Liu Biao , Chen Bin , Zhu Wang-fa , Ye Xiang-Hua , Li Hong-zhuo , He Xiao-feng
Published: January 2022

Background: Several studies have examined the association between vitamin D receptor (VDR) polymorphisms and osteoporotic fracture risk; however, the results are not uniform. Furthermore, many new articles have been published, and therefore, an updated meta-analysis was performed to further explore these issues.

Objectives: The aim of the study was to investigate the association between VDR, BsmI, ApaI, TaqI, FokI, and Cdx2 polymorphisms and osteoporotic fracture risk.

Methods: The odds ratios (ORs) and 95% confidence intervals (CIs) were used to assess the association between VDR BsmI, ApaI, TaqI, FokI, and Cdx2 polymorphisms and the risk of osteoporotic fracture. We also used the false-positive reporting probability (FPRP) test and the Venice criteria to evaluate the credibility of the statistically significant associations.

Results: Overall, this study found that the VDR ApaI and BsmI polymorphisms significantly increased the risk of osteoporotic fracture in European countries and America, respectively. However, when sensitivity analysis was performed after excluding low-quality and Hardy–Weinberg disequilibrium (HWD) studies, it was found that only individuals with the double-mutated genotype have an increased risk of osteoporotic fracture in European countries. In addition, when the credibility of the positive results was assessed, it was found that the positive results were not credible.

Conclusion: This meta-analysis indicates that there may be no significant association among the polymorphisms of VDR BsmI, ApaI, TaqI, FokI, and Cdx2 and the risk of osteoporotic fracture. The increased risk of osteoporotic fracture is most likely due to false-positive results.
Single-Cell RNA Profiling of Human Skin Reveals Age-Related Loss of Dermal Sheath Cells and Their Contribution to a Juvenile Phenotype
Authors: Ahlers Juliane M. D. , Falckenhayn Cassandra , Holzscheck Nicholas , Solé-Boldo Llorenç , Schütz Sabrina , Wenck Horst , Winnefeld Marc , Lyko Frank , Grönniger Elke , Siracusa Annette
Published: January 2022

The dermal sheath (DS) is a population of mesenchyme-derived skin cells with emerging importance for skin homeostasis. The DS includes hair follicle dermal stem cells, which exhibit self-renewal and serve as bipotent progenitors of dermal papilla (DP) cells and DS cells. Upon aging, stem cells exhibit deficiencies in self-renewal and their number is reduced. While the DS of mice has been examined in considerable detail, our knowledge of the human DS, the pathways contributing to its self-renewal and differentiation capacity and potential paracrine effects important for tissue regeneration and aging is very limited. Using single-cell RNA sequencing of human skin biopsies from donors of different ages we have now analyzed the transcriptome of 72,048 cells, including 50,149 fibroblasts. Our results show that DS cells that exhibit stem cell characteristics were lost upon aging. We further show that HES1, COL11A1, MYL4 and CTNNB1 regulate DS stem cell characteristics. Finally, the DS secreted protein Activin A showed paracrine effects on keratinocytes and dermal fibroblasts, promoting proliferation, epidermal thickness and pro-collagen production. Our work provides a detailed description of human DS identity on the single-cell level, its loss upon aging, its stem cell characteristics and its contribution to a juvenile skin phenotype.
CircACC1 Promotes NSCLC Proliferation via miR-29c-3p/MCL-1 Signaling Pathway
Authors: Zhu Bo , Ke Lixia , Li Peixian , Wang Xin , Yang Lan , Bai Minghua , Chen Mailin
Published: January 2022

Non-small cell lung cancer remains the leading cause of cancer-related deaths worldwide with high morbidity and mortality. There is an urgent need to reveal new molecular mechanisms that contribute to NSCLC progression to facilitate drug development and to improve overall survival. Much attention has been paid to the role of circRNAs in NSCLC development. However, the knowledge of circRNAs in NSCLC is still limited, and need to be further explored. The dysregulation of circACC1 was evaluated by qRT-PCR in NSCLC samples and cell lines. The oncogenic role of circACC1 in NSCLC progression was analyzed by CCK8 and colony formation assays. The interaction between the circACC1 and miR-29c-3p, as well as MCL-1, was verified by qRT-PCR, Western blot, luciferase reporter assay, and RIP experiment. Elevated levels of circACC1 were found in NSCLC patients and were negatively correlated with OS. Ectopic expression of circACC1 promoted the capacity of cell growth and clonogenicity, while the inhibition of circACC1 decreased the proliferation and clonogenicity potential. Mechanism studies elucidated that circACC1 contributes to cell growth via directly binding to miR-29c-3p. Transfection of miR-29c-3p mimic blocked circACC1 mediated NSCLC cell proliferation. MCL-1 is a downstream target of miR-29c-3p in NSCLC cells. The circACC1/miR-29c-3p/MCL-1 axis is important in NSCLS proliferation.
Chimeric Antigens Receptor T Cell Therapy Improve the Prognosis of Pediatric Acute Lymphoblastic Leukemia With Persistent/Recurrent Minimal Residual Disease in First Complete Remission
Authors: Hu Guan-hua , Cheng Yi-fei , Zuo Ying-xi , Chang Ying-jun , Suo Pan , Wu Jun , Jia Yue-ping , Lu Ai-dong , Li Ying-chun , Wang Yu , Jiao Shun-chang , Zhang Long-ji , Zhao Xiang-yu , Yan Chen-hua , Xu Lan-ping , Zhang Xiao-hui , Liu Kai-yan , Wang Yu , Zhang Le-ping , Huang Xiao-jun
Published: January 2022

Background

The presence of minimal residual disease (MRD) is an independent risk factor for poor prognosis in patients with acute lymphoblastic leukemia (ALL). Moreover, the role of chimeric antigen receptor T-cell (CAR-T) therapy in patients with MRD is currently unclear.

Methods

We conducted a prospective study to investigate the role of CAR-T therapy in patients with persistent/recurrent MRD-positive ALL in first remission.

Results

A total of 77 patients who had persistent/recurrent MRD were included. Of these patients, 43 were enrolled in the CAR-T group, 20 received chemotherapy as a bridge to allogeneic hematopoietic cell transplantation (allo-HSCT), and 14 patients received intensified chemotherapy. MRD negativity was achieved in 90.7% of the patients after CAR-T infusion. Patients who received CAR-T therapy had a higher 3-year leukemia-free survival (LFS) than patients who did not (77.8% vs. 51.1%, P = 0.033). Furthermore, patients in the CAR-T group had a higher 3-year LFS than those in the chemotherapy bridge-to-allo-HSCT group [77.8% (95% CI, 64.8–90.7%) vs. 68.7% (95% CI, 47.7–89.6%), P = 0.575] and had a significantly higher 3-year LFS than those in the intensified chemotherapy group [77.8% (95% CI, 64.8–90.7%) vs. 28.6% (95% CI, 4.9–52.3%), P = 0.001]. Among the patients who received CAR-T therapy, eight were not bridged to allo-HSCT, and six (75%) remained in remission with a median follow-up of 23.0 months after CAR-T infusion.

Conclusions

Our findings show that CAR-T therapy can effectively eliminate MRD and improve survival in patients with a suboptimal MRD response.
PP2Cδ Controls the Differentiation and Function of Dendritic Cells Through Regulating the NSD2/mTORC2/ACLY Pathway
Authors: Lv Nianyin , Jin Sufeng , Liang Zihao , Wu Xiaohui , Kang Yanhua , Su Lan , Dong Yeping , Wang Bingwei , Ma Tonghui , Shi Liyun
Published: January 2022

Dendritic cells (DCs) are recognized as a key orchestrator of immune response and homeostasis, deregulation of which may lead to autoimmunity such as experimental autoimmune encephalomyelitis (EAE). Herein we show that the phosphatase PP2Cδ played a pivotal role in regulating DC activation and function, as PP2Cδ ablation caused aberrant maturation, activation, and Th1/Th17-priming of DCs, and hence induced onset of exacerbated EAE. Mechanistically, PP2Cδ restrained the expression of the essential subunit of mTORC2, Rictor, primarily through de-phosphorylating and proteasomal degradation of the methyltransferase NSD2 via CRL4DCAF2 E3 ligase. Loss of PP2Cδ in DCs accordingly sustained activation of the Rictor/mTORC2 pathway and boosted glycolytic and mitochondrial metabolism. Consequently, ATP-citrate lyse (ACLY) was increasingly activated and catalyzed acetyl-CoA for expression of the genes compatible with hyperactivated DCs under PP2Cδ deletion. Collectively, our findings demonstrate that PP2Cδ has an essential role in controlling DCs activation and function, which is critical for prevention of autoimmunity.
The ALDH Family Contributes to Immunocyte Infiltration, Proliferation and Epithelial-Mesenchymal Transformation in Glioma
Authors: Wang Zeyu , Mo Yuyao , Tan Ying , Wen Zhihui , Dai Ziyu , Zhang Hao , Zhang Xun , Feng Songshan , Liang Xisong , Song Tao , Cheng Quan
Published: January 2022

Gliomas are malignant tumors that originate from the central nervous system. The aldehyde dehydrogenase family has been documented to affect cancer progression; however, its role in gliomas remains largely unexplored. Bulk RNA-seq analysis and single-cell RNA-Seq analysis were performed to explore the role of the aldehyde dehydrogenases family in gliomas. Training cohort contained The Cancer Genome Atlas data, while data from Chinese Glioma Genome Atlas and Gene Expression Omnibus were set as validation cohorts. Our scoring system based on the aldehyde dehydrogenases family suggested that high-scoring samples were associated with worse survival outcomes. The enrichment score of pathways were calculated by AUCell to substantiate the biofunction prediction results that the aldehyde dehydrogenases family affected glioma progression by modulating tumor cell proliferation, migration, and immune landscape. Tumor immune landscape was mapped from high-scoring samples. Moreover, ALDH3B1 and ALDH16A1, two main contributors of the scoring system, could affect glioblastoma cell proliferation and migration by inducing cell-cycle arrest and the epithelial-mesenchymal transition. Taken together, the aldehyde dehydrogenases family could play a significant role in the tumor immune landscape and could be used to predict patient prognosis. ALDH3B1 and ALDH16A1 could influence tumor cell proliferation and migration.
m6A Regulators Mediated Methylation Modification Patterns and Tumor Microenvironment Infiltration Characterization In Nasopharyngeal Carcinoma
Authors: Liu Zijian , He Jinlan , Han Jiaqi , Yang Jiangping , Liao Wenjun , Chen Nianyong
Published: January 2022

Background

The role of RNA N6-methyladenosine (m6A) modification in tumor progression and metastasis has been demonstrated. Nonetheless, potential biological function of m6A modification patterns in nasopharyngeal carcinoma (NPC) remains unknown.

Methods

The m6A modification patterns were comprehensively evaluated based on 26 m6A regulators in NPC, and m6A subtype and also m6A score were identified and systematically correlated with representative tumor characteristics.

Results

Two distinct m6A subtypes were determined and were highly consistent with immune activated and immune suppressed phenotypes, respectively. More representative m6A scores of individual tumors could predict tumor microenvironment (TME) infiltration, mRNA based stemness index (mRNAsi), EBV gene expression, genetic variation, and prognosis of NPC patients. Low m6A score, characterized by activation of immunity and suppression of mRNAsi and EBV gene, indicated an activated TME phenotype and better PFS and also lower risk of recurrence and metastasis. High m6A score, characterized by activation of Wnt and NF-κB signaling pathway and lack of effective immune infiltration, indicated an immune suppressed TME phenotype and poorer survival. Low m6A score was also correlated with increased tumor mutation burden (TMB) and better response to immunotherapy, and vice versa. A significant therapeutic advantage in patients with low m6A score was confirmed with an anti-PDL1 immunotherapy cohort.

Conclusions

m6A patterns played an important role in the diversity and complexity of TME. m6A score could be used to evaluate the m6A pattern of individual tumor to enhance our understanding of TME infiltration and guide more effective immunotherapy strategies.
TGF-β1 Drives Inflammatory Th Cell But Not Treg Cell Compartment Upon Allergen Exposure
Authors: Musiol Stephanie , Alessandrini Francesca , Jakwerth Constanze A. , Chaker Adam M. , Schneider Evelyn , Guerth Ferdinand , Schnautz Benjamin , Grosch Johanna , Ghiordanescu Ileana , Ullmann Julia T. , Kau Josephine , Plaschke Mirjam , Haak Stefan , Buch Thorsten , Schmidt-Weber Carsten B. , Zissler Ulrich M.
Published: January 2022

TGF-β1 is known to have a pro-inflammatory impact by inducing Th9 and Th17 cells, while it also induces anti-inflammatory Treg cells (Tregs). In the context of allergic airway inflammation (AAI) its dual role can be of critical importance in influencing the outcome of the disease. Here we demonstrate that TGF-β is a major player in AAI by driving effector T cells, while Tregs differentiate independently. Induction of experimental AAI and airway hyperreactivity in a mouse model with inducible genetic ablation of the gene encoding for TGFβ-receptor 2 (Tgfbr2) on CD4+T cells significantly reduced the disease phenotype. Further, it blocked the induction of pro-inflammatory T cell frequencies (Th2, Th9, Th17), but increased Treg cells. To translate these findings into a human clinically relevant context, Th2, Th9 and Treg cells were quantified both locally in induced sputum and systemically in blood of allergic rhinitis and asthma patients with or without allergen-specific immunotherapy (AIT). Natural allergen exposure induced local and systemic Th2, Th9, and reduced Tregs cells, while therapeutic allergen exposure by AIT suppressed Th2 and Th9 cell frequencies along with TGF-β and IL-9 secretion. Altogether, these findings support that neutralization of TGF-β represents a viable therapeutic option in allergy and asthma, not posing the risk of immune dysregulation by impacting Tregs cells.
Complement Inhibition Alleviates Cholestatic Liver Injury Through Mediating Macrophage Infiltration and Function in Mice
Authors: Guo Zhenya , Chen Junze , Zeng Yonglian , Wang Zefeng , Yao Mei , Tomlinson Stephen , Chen Bin , Yuan Guandou , He Songqing
Published: January 2022

Background and Aims

Cholestatic liver injury (CLI), which is associated with inflammatory reactions and oxidative stress, is a serious risk factor for postoperative complications. Complement system is involved in a wide range of liver disorders, including cholestasis. The present study assessed the role of complement in CLI and the therapeutic effect of the site-targeted complement inhibitor CR2-Crry in CLI.

Methods

Wild-type and complement gene deficient mice underwent common bile duct ligation (BDL) to induce CLI or a sham operation, followed by treatment with CR2-Crry or GdCl3. The roles of complement in CLI and the potential therapeutic effects of CR2-Crry were investigated by biochemical analysis, flow cytometry, immunohistochemistry, ELISA, and quantitative RT-PCR.

Results

C3 deficiency and CR2-Crry significantly reduced liver injuries in mice with CLI, and also markedly decreasing the numbers of neutrophils and macrophages in the liver. C3 deficiency and CR2-Crry also significantly reduced neutrophil expression of Mac-1 and liver expression of VCAM-1. More importantly, C3 deficiency and CR2-Crry significantly inhibited M1 macrophage polarization in these mice. Intravenous injection of GdCl3 inhibited macrophage infiltration and activation in the liver. However, the liver injury increased significantly. BDL significantly increased the level of lipopolysaccharide (LPS) in portal blood, but not in peripheral blood. GdCl3 significantly increased LPS in peripheral blood, suggesting that macrophages clear portal blood LPS. Oral administration of ampicillin to in GdCl3 treated mice reduced LPS levels in portal blood and alleviated liver damage. In contrast, intraperitoneal injection LPS increased portal blood LPS and reversed the protective effect of ampicillin. Interestingly, C3 deficiency did not affect the clearance of LPS.

Conclusions

Complement is involved in CLI, perhaps mediating the infiltration and activation of neutrophils and macrophage M1 polarization in the liver. C3 deficiency and CR2-Crry significantly alleviated CLI. Inhibition of complement could preserve the protective function of macrophages in clearing LPS, suggesting that complement inhibition could be useful in treating CLI.
Innate Lymphoid Cells in Autoimmune Diseases
Authors: Clottu Aurelie S. , Humbel Morgane , Fluder Natalia , Karampetsou Maria P. , Comte Denis
Published: January 2022

Innate lymphoid cells (ILC) are a heterogeneous group of immune cells characterized by lymphoid morphology and cytokine profile similar to T cells but which do not express clonally distributed diverse antigen receptors. These particular cells express transcription factors and cytokines reflecting their similarities to T helper (Th)1, Th2, and Th17 cells and are therefore referred to as ILC1, ILC2, and ILC3. Other members of the ILC subsets include lymphoid tissue inducer (LTi) and regulatory ILC (ILCreg). Natural killer (NK) cells share a common progenitor with ILC and also exhibit a lymphoid phenotype without antigen specificity. ILC are found in low numbers in peripheral blood but are much more abundant at barrier sites such as the skin, liver, airways, lymph nodes, and the gastrointestinal tract. They play an important role in innate immunity due to their capacity to respond rapidly to pathogens through the production of cytokines. Recent evidence has shown that ILC also play a key role in autoimmunity, as alterations in their number or function have been identified in systemic lupus erythematosus, systemic sclerosis, and rheumatoid arthritis. Here, we review recent advances in the understanding of the role of ILC in the pathogenesis of autoimmune diseases, with particular emphasis on their role as a potential diagnostic biomarker and as therapeutic targets.
Multicriteria Decision Analysis Addressing Marine and Terrestrial Plastic Waste Management: A Review
Authors: Santos Murilo R. , Dias Luis C. , Cunha Maria C. , Marques João R.
Published: January 2022

This paper is a systematic review of studies that used multicriteria decision analysis (MCDA) to address plastic waste management. A literature search for scientific articles in online databases (Web of Science and Scopus) enabled us to identify 20 relevant papers from 2008 to 2021, spanning case studies in three continents. These studies focus on: plastics as a resource (material), plastics as a product (reverse logistics), and plastics as a problem (pollution). Content analysis methodology was used, with the focus being on how the authors used MCDA for managing plastic waste, which has relevance for researchers and practitioners. Alternative solutions were found for the selection of disposal methods for almost all types of plastic categorized in this review. The most popular method was AHP, followed by TOPSIS, outranking methods, MAUT/MAVT and simple weighted sums, with some studies including more than one method. The choice of criteria spanned operational (mostly), but also environmental and economic aspects to evaluate the alternatives. Less frequently, one finds criteria related to social, managerial, and political aspects. The weighting of the criteria was performed mainly by consulting experts, followed by decision makers. Representatives of the affected population or other stakeholders have been consulted only on a few occasions. The authors of the studies consider their application of MCDA was successful, highlighting mainly the importance of being able to encompass different dimensions in the evaluation of the alternatives and the transparency of the process. In most cases, a winning alternative emerged clearly, which sometimes was a combination of multiple strategies. We also report other recommendations of these authors concerning marine and terrestrial plastic waste management.
Marine Heatwaves in the Chesapeake Bay
Authors: Mazzini Piero L. F. , Pianca Cassia
Published: January 2022

Prolonged events of anomalously warm sea water temperature, or marine heatwaves (MHWs), have major detrimental effects to marine ecosystems and the world's economy. While frequency, duration and intensity of MHWs have been observed to increase in the global oceans, little is known about their potential occurrence and variability in estuarine systems due to limited data in these environments. In the present study we analyzed a novel data set with over three decades of continuous in situ temperature records to investigate MHWs in the largest and most productive estuary in the US: the Chesapeake Bay. MHWs occurred on average twice per year and lasted 11 days, resulting in 22 MHW days per year in the bay. Average intensities of MHWs were 3°C, with maximum peaks varying between 6 and 8°C, and yearly cumulative intensities of 72°C × days on average. Large co-occurrence of MHW events was observed between different regions of the bay (50–65%), and also between Chesapeake Bay and the Mid-Atlantic Bight (40–50%). These large co-occurrences, with relatively short lags (2–5 days), suggest that coherent large-scale air-sea heat flux is the dominant driver of MHWs in this region. MHWs were also linked to large-scale climate modes of variability: enhancement of MHW days in the Upper Bay were associated with the positive phase of Niño 1+2, while enhancement and suppression of MHW days in both the Mid and Lower Bay were associated with positive and negative phases of North Atlantic Oscillation, respectively. Finally, as a result of long-term warming of the Chesapeake Bay, significant trends were detected for MHW frequency, MHW days and yearly cumulative intensity. If these trends persist, by the end of the century the Chesapeake Bay will reach a semi-permanent MHW state, when extreme temperatures will be present over half of the year, and thus could have devastating impacts to the bay ecosystem, exacerbating eutrophication, increasing the severity of hypoxic events, killing benthic communities, causing shifts in species composition and decline in important commercial fishery species. Improving our basic understanding of MHWs in estuarine regions is necessary for their future predictability and to guide management decisions in these valuable environments.
Shelf Transport Pathways Adjacent to the East Australian Current Reveal Sources of Productivity for Coastal Reefs
Authors: Roughan Moninya , Cetina-Heredia Paulina , Ribbat Nina , Suthers Iain M.
Published: January 2022

The region where the East Australian Current (EAC) separates from the coast is dynamic and the shelf circulation is impacted by the interplay of the western boundary current and its eddy field with the coastal ocean. This interaction can drive upwelling, retention or export. Hence understanding the connection between offshore waters and the inner shelf is needed as it influences the productivity potential of valuable coastal rocky reefs. Near urban centres, artificial reefs enhance fishing opportunities in coastal waters, however these reefs are located without consideration of the productivity potential of adjacent waters. Here we identify three dominant modes of mesoscale circulation in the EAC separation region (~31.5−34.5°S); the ‘EAC mode’ which dominates the flow in the poleward direction, and two eddy modes, the ‘EAC eddy mode’ and the ‘Eddy dipole mode’, which are determined by the configuration of a cyclonic and anticyclonic eddy and the relationship with the separated EAC jet. We use a Lagrangian approach to reveal the transport pathways across the shelf to understand the impact of the mesoscale circulation modes and to explore the productivity potential of the coastal waters. We investigate the origin (position and depth) of the water that arrives at the inner-mid shelf over a 21-day period (the plankton productivity timescale). We show that the proportion of water that is upwelled from below the euphotic zone varies spatially, and with each mesoscale circulation mode. Additionally, shelf transport timescales and pathways are also impacted by the mesoscale circulation. The highest proportion of upwelling (70%) occurs upstream of 32.5°S, associated with the EAC jet separation, with vertical displacements of 70–120 m. From 33 to 33.5°S, water comes from offshore above the euphotic layer, and shelf transport timescales are longest. The region of highest retention over the inner shelf is immediately downstream of the EAC separation region. The position of the EAC jet and the location of the cyclonic eddy determines the variability in shelf-ocean interactions and the productivity of shelf waters. These results are useful for understanding productivity of temperate rocky reefs in general and specifically for fisheries enhancements along an increasingly urbanised coast.
Ultra-Thin Chiral Metasurface-Based Superoscillatory Lens
Authors: Li Jinxing , Yang Guohui , Yuan Yueyi , Wu Qun , Zhang Kuang
Published: January 2022

The metasurface-based superoscillatory lens has been demonstrated to be effective in finely tailoring the wavefront of light to generate focal spots beyond the diffraction limit in the far-field that is capable of improving the resolution of the imaging system. In this paper, an ultra-thin (0.055 λ0) metasurface-based superoscillatory lens (SOL) that can generate a sub-diffraction optical needle with a long focal depth is proposed, which is constructed by ultra-thin chiral unit cells containing two metal split-ring resonators (SRR) with a 90° twisted angle difference cladded on both sides of a 1.5 mm-thick dielectric substrate, with a high linear cross-polarized transmission coefficient around 0.9 and full phase control capability at 11 GHz. Full-wave simulation shows that SOL generates a sub-diffraction optical needle within 10.5–11.5 GHz. At the center frequency, the focal depth is 281 mm (10.3 λ0) within 105–386 mm, the full width at half maximum (FWHM) is 18.5 mm (0.68 λ0), about 0.7 times the diffraction limit, generally consistent with the theoretical result. The proposed ultra-thin chiral metasurface-based SOL holds great potential in integrating into practical imaging applications for its simple fabrication, high efficiency, and low-profile advantages.
Mechanical Characteristics and Stress Evolution of Cemented Paste Backfill: Effect of Curing Time, Solid Content, and Binder Content
Authors: Hou Chen , Yang Liujun , Li Lei , Yan Baoxu
Published: January 2022

The clarification of the variation on the strength of the cemented paste backfill (CPB) under the coupling of multi-factor is the foundation of the CPB design of the mine. In this article, the physical and mechanical properties of the CPB under the coupling effect of curing time, solid content, and binder content were experimentally and theoretically investigated. The results show that 1) the increase in binder content can effectively increase the later strength of CPB. 2) A sensitivity parameter considering the span of multi-factor was constructed, indicating that the curing time has the greatest impact on the uniaxial compressive strength (UCS), and the variation in solid content has the least impact on it, which can be verified by the stress–strain curves. 3) Curing time and binder content can effectively change the stress evolution, which is reflected in reducing the strain corresponding to the peak stress, enhancing the characteristics of the peak stress and increasing stress drop. The results of this study aim to explain the essence of the influence of each factor on the mechanical behavior of CPB in the view of stress–strain evolution, which will help to better understand the mechanical characteristics of CPB and quantify the sensitivity of the mechanical properties to various factors.
Not Only High Number and Specific Comorbidities but Also Age Are Closely Related to Progression and Poor Prognosis in Patients With COVID-19
Authors: Liu Dafeng , Zheng Yongli , Kang Jun , Wang Dongmei , Bai Lang , Mao Yi , Zha Guifang , Tang Hong , Zhang Renqing
Published: January 2022

Background: Some patients with comorbidities and rapid disease progression have a poor prognosis.

Aim: We aimed to investigate the characteristics of comorbidities and their relationship with disease progression and outcomes of COVID-19 patients.

Methods: A total of 718 COVID-19 patients were divided into five clinical type groups and eight age-interval groups. The characteristics of comorbidities were compared between the different clinical type groups and between the different age-interval groups, and their relationships with disease progression and outcomes of COVID-19 patients were assessed.

Results: Approximately 91.23% (655/718) of COVID-19 patients were younger than 60 years old. Approximately 64.76% (465/718) had one or more comorbidities, and common comorbidities included non-alcoholic fatty liver disease (NAFLD), hyperlipidaemia, hypertension, diabetes mellitus (DM), chronic hepatitis B (CHB), hyperuricaemia, and gout. COVID-19 patients with comorbidities were older, especially those with chronic obstructive pulmonary disease (COPD) and cardiovascular disease (CVD). Hypertension, DM, COPD, chronic kidney disease (CKD) and CVD were mainly found in severe COVID-19 patients. According to spearman correlation analysis the number of comorbidities was correlated positively with disease severity, the number of comorbidities and NAFLD were correlated positively with virus negative conversion time, hypertension, CKD and CVD were primarily associated with those who died, and the above-mentioned correlation existed independently of age. Risk factors included age, the number of comorbidities and hyperlipidaemia for disease severity, the number of comorbidities, hyperlipidaemia, NAFLD and COPD for the virus negative conversion time, and the number of comorbidities and CKD for prognosis. Number of comorbidities and age played a predictive role in disease progression and outcomes.

Conclusion: Not only high number and specific comorbidities but also age are closely related to progression and poor prognosis in patients with COVID-19. These findings provide a reference for clinicians to focus on not only the number and specific comorbidities but also age in COVID-19 patients to predict disease progression and prognosis.

Clinical Trial Registry: Chinese Clinical Trial Register ChiCTR2000034563.
Factors Associated With the Presence of Foveal Bulge in Eyes With Resolved Diabetic Macular Edema
Authors: Wu Qiaowei , Hu Yijun , Liu Baoyi , Lin Zhanjie , Xiao Yu , Zeng Xiaomin , Fang Ying , Yan Ying , Ye Ya , Yan Ming , Huang Zhen , Yu Honghua , Song Yanping , Zang Siwen
Published: January 2022

Purpose:To evaluate factors associated with the presence of foveal bulge (FB) in resolved diabetic macular edema (DME) eyes.

Methods:A total of 165 eyes with complete integrity of ellipsoid zone (EZ) at the fovea and resolved DME were divided into two groups according to the presence of FB at 6 months after intravitreal injection of ranibizumab treatment. Best-corrected visual acuity (BCVA), central foveal thickness (CFT), outer nuclear layer (ONL) thickness, height of serous retinal detachment (SRD) and non-SRD, and inner segment (IS) and outer segment (OS) lengths of the two groups were measured and compared at baseline and each follow-up. The correlations between the presence of FB and pre- and post-treatment factors were determined by logistic regression analysis.

Results:At baseline, BCVA was significantly better, and CFT and incidence and height of SRD were significantly lower in the FB (+) group (allP< 0.05). At 6 months, FB was present in 65 (39.39%) eyes. Post-treatment BCVA was significantly better and OS length was significantly longer in the FB (+) group at 6 months (allP< 0.05). Multivariate analysis identified younger age, better BCVA, and lower CFT before treatment as significant predictors of the existence of FB at 6 months (allP< 0.05). At 6 months, better BCVA and longer OS length were significantly correlated with the existence of FB (allP< 0.05).

Conclusions:Factors associated with the presence of FB after the resolution of DME include younger age, better baseline BCVA and lower baseline CFT, and better post-treatment BCVA and longer post-treatment OS length.
Study of Risk Factors for Total Attack Rate and Transmission Dynamics of Norovirus Outbreaks, Jiangsu Province, China, From 2012 to 2018
Authors: Ai Jing , Zhu Yuanzhao , Fu Jianguang , Cheng Xiaoqing , Zhang Xuefeng , Ji Hong , Liu Wendong , Rui Jia , Xu Jingwen , Yang Tianlong , Wang Yao , Liu Xingchun , Yang Meng , Lin Shengnan , Guo Xiaohao , Bao Changjun , Li Qun , Chen Tianmu
Published: January 2022

Objective: To describe the epidemiological characteristics of norovirus outbreaks in Jiangsu Province, utilize the total attack rate (TAR) and transmissibility (Runc) as the measurement indicators of the outbreak, and a statistical difference in risk factors associated with TAR and transmissibility was compared. Ultimately, this study aimed to provide scientific suggestions to develop the most appropriate prevention and control measures.

Method: We collected epidemiological data from investigation reports of all norovirus outbreaks in Jiangsu Province from 2012 to 2018 and performed epidemiological descriptions, sequenced the genes of the positive specimens collected that were eligible for sequencing, created a database and calculated the TAR, constructed SEIAR and SEIARW transmission dynamic models to calculate Runc, and performed statistical analyses of risk factors associated with the TAR and Runc.

Results: We collected a total of 206 reported outbreaks, of which 145 could be used to calculate transmissibility. The mean TAR in was 2.6% and the mean Runc was 12.2. The epidemiological characteristics of norovirus outbreaks showed an overall increasing trend in the number of norovirus outbreaks from 2012 to 2018; more outbreaks in southern Jiangsu than northern Jiangsu; more outbreaks in urban areas than in rural areas; outbreaks occurred mostly in autumn and winter. Most of the sites where outbreaks occurred were schools, especially primary schools. Interpersonal transmission accounted for the majority. Analysis of the genotypes of noroviruses revealed that the major genotypes of the viruses changed every 3 years, with the GII.2 [P16] type of norovirus dominating from 2016 to 2018. Statistical analysis of TAR associated with risk factors found statistical differences in all risk factors, including time (year, month, season), location (geographic location, type of settlement, type of premises), population (total number of susceptible people at the outbreak site), transmission route, and genotype (P < 0.05). Statistical analysis of transmissibility associated with risk factors revealed that only transmissibility was statistically different between sites.

Conclusions: The number of norovirus outbreaks in Jiangsu Province continues to increase during the follow-up period. Our findings highlight the impact of different factors on norovirus outbreaks and identify the key points of prevention and control in Jiangsu Province.
Three-Dimensional Liver Image Segmentation Using Generative Adversarial Networks Based on Feature Restoration
Authors: He Runnan , Xu Shiqi , Liu Yashu , Li Qince , Liu Yang , Zhao Na , Yuan Yongfeng , Zhang Henggui
Published: January 2022

Medical imaging provides a powerful tool for medical diagnosis. In the process of computer-aided diagnosis and treatment of liver cancer based on medical imaging, accurate segmentation of liver region from abdominal CT images is an important step. However, due to defects of liver tissue and limitations of CT imaging procession, the gray level of liver region in CT image is heterogeneous, and the boundary between the liver and those of adjacent tissues and organs is blurred, which makes the liver segmentation an extremely difficult task. In this study, aiming at solving the problem of low segmentation accuracy of the original 3D U-Net network, an improved network based on the three-dimensional (3D) U-Net, is proposed. Moreover, in order to solve the problem of insufficient training data caused by the difficulty of acquiring labeled 3D data, an improved 3D U-Net network is embedded into the framework of generative adversarial networks (GAN), which establishes a semi-supervised 3D liver segmentation optimization algorithm. Finally, considering the problem of poor quality of 3D abdominal fake images generated by utilizing random noise as input, deep convolutional neural networks (DCNN) based on feature restoration method is designed to generate more realistic fake images. By testing the proposed algorithm on the LiTS-2017 and KiTS19 dataset, experimental results show that the proposed semi-supervised 3D liver segmentation method can greatly improve the segmentation performance of liver, with a Dice score of 0.9424 outperforming other methods.
Gut Microbiome Distinguishes Patients With Epilepsy From Healthy Individuals
Authors: Cui Guangying , Liu Shanshuo , Liu Zhenguo , Chen Yuan , Wu Tianwen , Lou Jiamin , Wang Haiyu , Zou Yawen , Sun Ying , Rao Benchen , Ren Zhigang , Lian Yajun , Jiang Yan
Published: January 2022

Objective: The gut microecosystem is the largest microecosystem in the human body and has been proven to be linked to neurological diseases. The main objective of this study was to characterize the fecal microbiome, investigate the differences between epilepsy patients and healthy controls, and evaluate the potential efficacy of the fecal microbiome as a diagnostic tool for epilepsy.

Design: We collected 74 fecal samples from epilepsy patients (Eps, n = 24) and healthy controls (HCs, n = 50) in the First Affiliated Hospital of Zhengzhou University and subjected the samples to 16S rRNA MiSeq sequencing and analysis. We set up a train set and a test set, identified the optimal microbial markers for epilepsy after characterizing the gut microbiome in the former and built a diagnostic model, then validated it in the validation group.

Results: There were significant differences in microbial communities between the two groups. The α-diversity of the HCs was higher than that of the epilepsy group, but the Venn diagram showed that there were more unique operational taxonomic unit (OTU) in the epilepsy group. At the phylum level, Proteobacteria and Actinobacteriota increased significantly in Eps, while the relative abundance of Bacteroidota increased in HCs. Compared with HCs, Eps were enriched in 23 genera, including Faecalibacterium, Escherichia-Shigella, Subdoligranulum and Enterobacteriaceae-unclassified. In contrast, 59 genera including Bacteroides, Megamonas, Prevotella, Lachnospiraceae-unclassified and Blautia increased in the HCs. In Spearman correlation analysis, age, WBC, RBC, PLT, ALB, CREA, TBIL, Hb and Urea were positively correlated with most of the different OTUs. Seizure-type, course and frequency are negatively correlated with most of the different OTUs. In addition, twenty-two optimal microbial markers were identified by a fivefold cross-validation of the random forest model. In the established train set and test set, the area under the curve was 0.9771 and 0.993, respectively.

Conclusion: Our study was the first to characterize the gut microbiome of Eps and HCs in central China and demonstrate the potential efficacy of microbial markers as a noninvasive biological diagnostic tool for epilepsy.