bluuebunny/crossref_metadata_2025 huggingface dataset:
Changes in Protein Kinase A Activity Accompany Sclerotial Development inSclerotinia sclerotiorum
Authors: Harel A. , Gorovits R. , Yarden O.
Published: May 2007

Sclerotia of Sclerotinia sclerotiorum are pigmented, multihyphal structures that play a central role in the life and infection cycles of this pathogen. Sclerotial formation has been shown to be affected by increased intracellular cAMP levels. Cyclic AMP (cAMP) is a key modulator of cAMP-dependent protein kinase A (PKA) and the latter may prove to play a significant role in sclerotial development. Therefore, we monitored changes in relative PKA activity levels during sclerotial development. To do so, we first developed conditions for near-synchronous sclerotial development in culture, based on hyphal maceration and filtering. Relative PKA activity levels increased during the white-sclerotium stage in the wild-type strain, while low levels were maintained in nonsclerotium-producing mutants. Furthermore, applying caffeine, an inducer of PKA activity, resulted in increased relative PKA activity levels and was correlated with the formation of sclerotial initial-like aggregates in cultures of the non-sclerotium-producing mutants. In addition, low PKA activities were found in an antisense smk1 strain, which exhibits low extracellular-signal-regulated kinase (ERK)-type mitogen-activated protein kinase (MAPK) activity, and does not produce sclerotia. The changes in PKA activity, as well as the abundance of phosphorylated MAPKs (ERK-like as well as p38-like) that accompany sclerotial development in a distinct developmental phase manner represent a potential target for antifungal intervention.
Inheritance of Resistance toColletotrichum acutatuminFragaria×ananassa
Authors: Denoyes-Rothan Béatrice , Guérin Guy , Lerceteau-Köhler Estelle , Risser Georgette
Published: May 2007

Anthracnose, caused by Colletotrichum acutatum, is a major disease of the octoploid cultivated strawberry, Fragaria × ananassa The inheritance of high and intermediate level plant resistances to C. acutatum, pathogenicity group 2, was investigated in an 8 × 8 factorial design. A single dominant gene (Rca2) controlled the high-level resistance, although minor genes may also contribute to resistance in cultivars such as Belrubi. The intermediate level of resistance was quantitative and controlled by minor genes. Analysis of 26 genotypes and cultivars from Fragaria spp. showed that the dominant gene was not rare in the germ plasm of F. × ananassa and that anthracnose resistance was also present in other species of Fragaria. These findings have important implications for anthracnose resistance breeding.
Characterization of Apricot pseudo-chlorotic leaf spot virus, A Novel Trichovirus Isolated from Stone Fruit Trees
Authors: Liberti D. , Marais A. , Svanella-Dumas L. , Dulucq M. J. , Alioto D. , Ragozzino A. , Rodoni B. , Candresse T.
Published: May 2007

A trichovirus closely related to Apple chlorotic leaf spot virus (ACLSV) was detected in symptomatic apricot and Japanese plum from Italy. The Sus2 isolate of this agent cross-reacted with anti-ACLSV polyclonal reagents but was not detected by broad-specificity anti- ACLSV monoclonal antibodies. It had particles with typical trichovirus morphology but, contrary to ACLSV, was unable to infect Chenopodium quinoa and C. amaranticolor. The sequence of its genome (7,494 nucleotides [nt], missing only ≈30 to 40 nt of the 5′ terminal sequence) and the partial sequence of another isolate were determined. The new virus has a genomic organization similar to that of ACLSV, with three open reading frames coding for a replication-associated protein (RNA-dependent RNA polymerase), a movement protein, and a capsid protein, respectively. However, it had only ≈65 to 67% nucleotide identity with sequenced isolates of ACLSV. The differences in serology, host range, genome sequence, and phylogenetic reconstructions for all viral proteins support the idea that this agent should be considered a new virus, for which the name Apricot pseudo-chlorotic leaf spot virus (APCLSV) is proposed. APCLSV shows substantial sequence variability and has been recovered from various Prunus sources coming from seven countries, an indication that it is likely to have a wide geographical distribution.
Modeling Spatial Characteristics in the Biological Control of Fungi at Leaf Scale: Competitive Substrate Colonization by Botrytis cinerea and the Saprophytic Antagonist Ulocladium atrum
Authors: Kessel G. J. T. , Köhl J. , Powell J. A. , Rabbinge R. , van der Werf W.
Published: May 2007

A spatially explicit model describing saprophytic colonization of dead cyclamen leaf tissue by the plant-pathogenic fungus Botrytis cinerea and the saprophytic fungal antagonist Ulocladium atrum was constructed. Both fungi explore the leaf and utilize the resources it provides. Leaf tissue is represented by a two-dimensional grid of square grid cells. Fungal competition within grid cells is modeled using Lotka-Volterra equations. Spatial expansion into neighboring grid cells is assumed proportional to the mycelial density gradient between donor and receptor cell. Established fungal biomass is immobile. Radial growth rates of B. cinerea and U. atrum in dead cyclamen leaf tissue were measured to determine parameters describing the spatial dynamics of the fungi. At temperatures from 5 to 25°C, B. cinerea colonies expanded twice as rapidly as U. atrum colonies. In practical biological control, the slower colonization of space by U. atrum thus needs to be compensated by a sufficiently dense and even distribution of conidia on the leaf. Simulation results confirm the importance of spatial expansion to the outcome of the competitive interaction between B. cinerea and U. atrum at leaf scale. A sensitivity analysis further emphasized the importance of a uniform high density cover of vital U. atrum conidia on target leaves.
The Explicit Dependence of Quadrat Variance on the Ratio of Clump Size to Quadrat Size
Authors: Ferrandino Francis J.
Published: May 2007

In the past decade, it has become common practice to pool mapped binary epidemic data into quadrats. The resultant “quadrat counts” can then be analyzed by fitting them to a probability distribution (i.e., betabinomial). Often a binary form of Taylor's power law is used to relate the quadrat variance to the quadrat mean. The fact that there is an intrinsic dependence of such analyses on quadrat size and shape is well known. However, a clear-cut exposition of the direct connection between the spatial properties of the two-dimensional pattern of infected plants in terms of the geometry of the quadrat and the results of quadrat-based analyses is lacking. This problem was examined both empirically and analytically. The empirical approach is based on a set of stochastically generated “mock epidemics” using a Neyman-Scott cluster process. The resultant spatial point-patterns of infected plants have a fixed number of disease foci characterized by a known length scale (monodisperse) and saturated to a known disease level. When quadrat samples of these epidemics are fit to a beta-binomial distribution, the resulting measures of aggregation are totally independent of disease incidence and most strongly dependent on the ratio of the length scale of the quadrat to the length scale of spatial aggregation and to a lesser degree on disease saturation within individual foci. For the analytical approach, the mathematical form for the variation in the sum of random variates is coupled to the geometry of a quadrat through an assumed exponential autocorrelation function. The net result is an explicit equation expressing the intraquadrat correlation, quadrat variance, and the index of dispersion in terms of the ratio of the quadrat length scale to the correlative length scale.
The Genetic Structure of Australian Populations of Mycosphaerella musicola Suggests Restricted Gene Flow at the Continental Scale
Authors: Hayden H. L. , Carlier J. , Aitken E. A. B.
Published: May 2007

Mycosphaerella musicola causes Sigatoka disease of banana and is endemic to Australia. The population genetic structure of M. musicola in Australia was examined by applying single-copy restriction fragment length polymorphism probes to hierarchically sampled populations collected along the Australian east coast. The 363 isolates studied were from 16 plantations at 12 sites in four different regions, and comprised 11 populations. These populations displayed moderate levels of gene diversity (H = 0.142 to 0.369) and similar levels of genotypic richness and evenness. Populations were dominated by unique genotypes, but isolates sharing the same genotype (putative clones) were detected. Genotype distribution was highly localized within each population, and the majority of putative clones were detected for isolates sampled from different sporodochia in the same lesion or different lesions on a plant. Multilocus gametic disequilibrium tests provided further evidence of a degree of clonality within the populations at the plant scale. A complex pattern of population differentiation was detected for M. musicola in Australia. Populations sampled from plantations outside the two major production areas were genetically very different to all other populations. Differentiation was much lower between populations of the two major production areas, despite their geographic separation of over 1,000 km. These results suggest low gene flow at the continental scale due to limited spore dispersal and the movement of infected plant material.
Resistance inLycopersicon esculentumIntraspecific Crosses to Race T1 Strains ofXanthomonas campestrispv.vesicatoriaCausing Bacterial Spot of Tomato
Authors: Yang Wencai , Sacks Erik J. , Lewis Ivey Melanie L. , Miller Sally A. , Francis David M.
Published: May 2007

We used molecular markers to identify quantitative trait loci (QTL) that confer resistance in the field to Xanthomonas campestris pv. vesicatoria race T1, a causal agent of bacterial spot of tomato. An F2population derived from a cross between Hawaii 7998 (H 7998) and an elite breeding line, Ohio 88119, was used for the initial identification of an association between molecular markers and resistance as measured by bacterial populations in individual plants in the greenhouse. Polymorphism in this cross between a Lycopersicon esculentum donor of resistance and an elite L. esculentum parent was limited. The targeted use of a core set of 148 polymerase chain reaction-based markers that were identified as polymorphic in L. esculentum × L. esculentum crosses resulted in the identification of 37 markers that were polymorphic for the cross of interest. Previous studies using an H 7998 × L. pennellii wide cross implicated three loci, Rx1, Rx2, and Rx3, in the hypersensitive response to T1 strains. Markers that we identified were linked to the Rx1 and Rx3 loci, but no markers were identified in the region of chromosome 1 where Rx2 is located. Single marker-trait analysis suggested that chromosome 5, near the Rx3 locus, contributed to reduced bacterial populations in lines carrying the locus from H 7998. The locus on chromosome 5 explained 25% of the phenotypic variation in bacterial populations developing in infected plants. An advanced backcross population and subsequent inbred backcross lines developed using Ohio 88119 as a recurrent parent were used to confirm QTL associations detected in the F2population. Markers on chromosome 5 explained 41% of the phenotypic variation for resistance in replicated field trials. In contrast, the Rx1 locus on chromosome 1 did not play a role in resistance to X. campestris pv. vesicatoria race T1 strains as measured by bacterial populations in the greenhouse or symptoms in the field. A locus from H 7998 on chromosome 4 was associated with susceptibility to disease and explained 11% of the total phenotypic variation. Additional variation in resistance was explained by plant maturity (6%), with early maturing families expressing lower levels of resistance, and plant habit (6%), with indeterminate plants displaying more resistance. The markers linked to Rx3 will be useful in selection for resistance in elite × elite crosses.
Relationship Between Loci Conferring Downy Mildew and Powdery Mildew Resistance in Melon Assessed by Quantitative Trait Loci Mapping
Authors: Perchepied L. , Bardin M. , Dogimont C. , Pitrat M.
Published: May 2007

Partial resistance to downy mildew (Pseudoperonospora cubensis) and complete resistance to powdery mildew (Podosphaera xanthii races 1, 2, 3, and 5 and Golovinomyces cichoracearum race 1) were studied using a recombinant inbred line population between ‘PI 124112’ (resistant to both diseases) and ‘Védrantais’ (susceptible line). A genetic map of melon was constructed to tag these resistances with DNA markers. Natural and artificial inoculations of Pseudoperonospora cubensis were performed and replicated in several locations. One major quantitative trait loci (QTL), pcXII.1, was consistently detected among the locations and explained between 12 to 38% of the phenotypic variation for Pseudoperonospora cubensis resistance. Eight other Pseudoperonospora cubensis resistance QTL were identified. Artificial inoculations were performed with several strains of four races of Podosphaera xanthii and one race of G. cichoracearum. Two independent major genes, PmV.1 and PmXII.1, were identified and shown to be involved in the simple resistance to powdery mildew. Three digenic epistatic interactions involving four loci were detected for two races of Podosphaera xanthii and one race of G. cichoracearum. Co-localization between PmV.1, resistance genes, and resistance genes homologues was observed. Linkage between the major resistance QTL to Pseudoperonospora cubensis, pcXII.1, and one of the two resistance genes to powdery mildew, PmXII.1, was demonstrated.
Carbon-to-Nitrogen Ratio and Carbon Loading of Production Media Influence Freeze-Drying Survival and Biocontrol Efficacy of Cryptococcus nodaensis OH 182.9
Authors: Zhang Shouan , Schisler David A. , Boehm Michael J. , Slininger Patricia J.
Published: May 2007

Fusarium head blight (FHB), caused by Gibberella zeae, is a devastating disease of wheat worldwide. Cryptococcus nodaensis OH 182.9 is an effective biocontrol agent for this disease. Development of a dried product of OH 182.9 would have potential advantages of ease of handling, favorable economics, and acceptance by end users. Isolate OH 182.9 was grown for 48 and 72 h in semi-defined complete liquid (SDCL) medium with carbon-to-nitrogen (C/N) ratios of 6.5:1, 9:1, 11:1, 15:1, and 30:1, and in SDCL C/N 30:1 media with varied carbon loadings of 7, 14, 21, and 28 g/liter. Total biomass production and cell survival at 15 days after freeze-drying were evaluated. Biomass production of OH 182.9 (CFU per milliliter) was not different for all cultivation time by medium C/N or carbon loading combinations. In general, cells harvested at 48 h survived freeze-drying better than those harvested at 72 h. Survival of freeze-dried cells was greatest for cells grown for 48 h in C/N30:1 medium. Cells produced in C/N 6.5:1 medium generally exhibited the poorest survival. For the C/N 30:1 media, cells from 7 g/liter carbon loading medium harvested after 48 h had the best survival after freeze-drying. The difference in freeze-dried cell populations between superior and inferior treatments was typically 1 to 2 log units at 15 days after freeze-drying. The biomass of OH 182.9 produced in SDCL with varied C/N ratios and in SDCL C/N 30:1 media with differing carbon loadings was tested for biocontrol efficacy against FHB in greenhouse studies. The biomass harvested from SDCL C/N 9:1, 11:1, and 15:1 media after 48 h significantly reduced symptoms of FHB. None of the treatments with cells harvested at 72 h consistently reduced FHB severity (P ≤ 0.05). Cells grown in SDCL C/N 30:1 media with 7 and 14 g/liter carbon loading significantly reduced FHB disease severity. Cells harvested from SDCL C/N 9:1, 11:1, and 30:1 with 14 g/liter carbon increased the 100-kernel weight compared with the disease control. The potential of improving OH 182.9 product quality via management of the nutritional environment of the production medium is demonstrated in this study.
Use of Magnetic Resonance Microscopy for the Nondestructive Observation of Xylem Cavitation Caused by Pine Wilt Disease
Authors: Utsuzawa Shin , Fukuda Kenji , Sakaue Daisuke
Published: May 2007

The development of xylem cavitation caused by pine wilt disease was visualized nondestructively with a compact magnetic resonance (MR) microscope system. A T1-weighted spin-echo sequence clearly visualized the water-filled xylem of Japanese black pine (Pinus thunbergii) as white zones, whereas cavitated xylem was represented as dark areas. Cavitated areas in the xylem were first observed 6 to 9 days after inoculation with the pinewood nematode (Bursaphelenchus xylophilus), and enlarged gradually over several days. After 11 to 18 days, cavitated areas rapidly increased in size, fused, and reached the cambium. This drastic expansion in cavitation coincided with and appeared to explain the sudden wilting of the seedlings. The development of cavitation observed through MR microscopy corresponded well with previous descriptions of disease progression.
Random Insertional Mutagenesis Identifies Genes Associated with Virulence in the Wheat Scab Fungus Fusarium graminearum
Authors: Seong Kyeyong , Hou Zhanming , Tracy Miles , Kistler H. Corby , Xu Jin-Rong
Published: May 2007

Fusarium graminearum is an important pathogen of small grains and maize in many areas of the world. To better understand the molecular mechanisms of F. graminearum pathogenesis, we used the restriction enzyme-mediated integration (REMI) approach to generate random insertional mutants. Eleven pathogenicity mutants were identified by screening 6,500 hygromycin-resistant transformants. Genetic analyses indicated that the defects in plant infection were tagged by the transforming vector in six of these mutants. In mutant M8, the transforming plasmid was integrated 110-bp upstream from the start codon of the cystathionine betalyase gene (CBL1). Gene replacement mutants deleted for CBL1 and the methionine synthase gene MSY1 were also obtained. Both the cbl1 and msy1 deletion mutants were methionine auxotrophic and significantly reduced in virulence on corn silks and wheat heads. We also identified genes disrupted by the transforming DNA in three other REMI mutants exhibiting reduced virulence. In mutants M68, the transforming vectors were inserted in the NADH: ubiquinone oxidoreductase. The putative b-ZIP transcription factor gene and the transducin beta-subunit-like gene disrupted in mutants M7 and M75, respectively, had no known homologs in filamentous fungi and were likely to be novel fungal virulence factors.
Characterization of the Microbial Community Involved in the Suppression of Pythium aphanidermatum in Cucumber Grown on Rockwool
Authors: Postma Joeke , Geraats Bart P. J. , Pastoor Rob , van Elsas Jan Dirk
Published: May 2007

The root pathogen Pythium aphanidermatum induced lower levels of disease in cucumber (Cucumis sativus) plants on unsterilized, re-used rockwool slabs than on heat-sterilized, re-used rockwool. Several recolonization treatments of the sterilized rockwool enhanced the suppressiveness of the rockwool. Microbial community structures in the different rockwool treatments were investigated by plate counts on selective media. Disease suppressiveness in the different rockwool treatments showed the highest correlation with the culturable number of filamentous actinomycetes in both experiments (r = 0.79 and 0.94), whereas the numbers of Trichoderma spp. correlated with suppression only in the first experiment (0.86). The numbers of total culturable bacteria, fluorescent pseudomonads, Bacillus spores, and fungi all showed lower correlations with disease suppressiveness. The filamentous actinomycetes enumerated with the plate counts were mainly Streptomyces spp., of which 10% were antagonistic toward P. aphanidermatum in dual culture. The composition of the bacterial and actinomycete populations was studied with polymerase chain reaction (PCR)-denaturing gradient gel electrophoresis (DGGE). Multivariate analyses of these patterns with canonical correspondence analysis showed significant correlations between the microbial composition and the disease suppressiveness. However, none of the bands in PCR-DGGE patterns occurred exclusively in the treatments that had enhanced disease suppressiveness. Bands extracted from the actinomycete-specific DGGE gels showed closest similarity with members of several actinomycete genera, i.e., Streptomyces, Mycobacterium, Microbacterium, Rhodococcus, Curtobacterium, and Tsukamurella. The possible mechanism of disease suppressiveness in used rockwool slabs, based on the results obtained with culture-dependent and culture-independent detection methods, is discussed.
Inheritance of Resistance to Watermelon mosaic virus in Cucumis melo that Impairs Virus Accumulation, Symptom Expression, and Aphid Transmission
Authors: Díaz-Pendón Juan Antonio , Fernández-Muñoz Rafael , Gómez-Guillamón María Luisa , Moriones Enrique
Published: May 2007

The Cucumis melo accession TGR-1551 was found to be resistant to Watermelon mosaic virus (WMV, genus Potyvirus, family Potyviridae). The resistance resulted in a drastic and significant reduction of virus titer and infected plants were asymptomatic or exhibited mild disease symptoms. The same gene or closely linked genes restricted virus accumulation and ameliorated symptom expression. No effect was observed on virus accumulation in inoculated leaves, which suggested that the initial phases of infection were not affected. The resistance was effective against a range of WMV isolates from Spanish melon production areas. Using aphid inoculations, resistant plants showed a lower propensity for infection by WMV and for serving as virus sources for secondary spread once infected. Resistance was determined to be under recessive genetic control.
Analysis of Summer Epidemic Progress of Apple Scab at Different Apple Production Systems in the Netherlands and Hungary
Authors: Holb I. J. , Heijne B. , Withagen J. C. M. , Gáll J. M. , Jeger M. J.
Published: May 2007

Two, 4-year studies on summer epidemic progress of apple scab were conducted at Randwijk, the Netherlands, from 1998 until 2001 and at Eperjeske, Hungary, from 2000 until 2003. Disease assessments were made on scab-susceptible cv. Jonagold. A range of nonlinear growth functions were fitted to a total of 96 disease progress curves (3 treatment classes × 2 plant parts × 2 disease measures × 4 years × 2 locations) of apple scab incidence and severity. The three-parameter logistic model gave the most consistent fit across three treatment classes in the experiment (integrated, organic-sprayed, and organic-unsprayed). Parameters estimated or calculated from the three-parameter logistic function were used to analyze disease progress. These were disease incidence and severity on the day of the first assessment (Ys); final disease incidence or upper asymptote for incidence (Yif) or severity (Ysf); fruit incidence and severity on day 40, after which no new lesions on fruits appeared (Y40); leaf incidence and severity on day 75, at which shoot growth stopped (Y 75); relative (β) and “absolute” (θ) rates of disease progress; inflection point (M); and area under the disease progress curve (AUDPCS) standardized by the duration of the total epidemic. Comparisons among disease progress curves were made by correlation and factor analysis followed by Varimax rotation. There were large differences but high positive correlations among the parameters Ys, Yf, θ, and AUDPCS across the three treatment classes. In the factor analysis, two factors accounted for more than 85% of the total variance for both incidence and severity. Factor 1 gave an overall description of epidemic progress of both scab incidence and severity and included the parameters Yf, Y40, Y75, θ, and AUDPCS. Factor 2 identified a relationship between the relative rate parameter (β) and the inflection point (M) for severity and a relationship between disease incidence and severity. For an integrated or an organic orchard, θ, AUDPCS, and one of Yf or Y75 (because of the link with host phenology) can characterize apple scab epidemics during summer. Based on these findings, improved scab management approaches were provided for integrated and organic apple production systems.
Relationships Between Incidence and Severity of Fusarium Head Blight on Winter Wheat in Ohio
Authors: Paul P. A. , El-Allaf S. M. , Lipps P. E. , Madden L. V.
Published: May 2007

To determine the relationship between incidence (I; proportion of diseased spikes) and severity (S; mean proportion of diseased spikelets per spike) for Fusarium head blight of wheat and to determine if severity could be predicted reliably from incidence data, disease assessments were made visually at multiple sample sites in artificially and naturally inoculated research and production fields between 1999 and 2002. Ten distinct data sets were collected. Mean disease intensity ranged from 0.023 to 0.975 for incidence and from 0.0003 to 0.808 for severity. A model based on complementary log-log transformation of incidence and severity performed well for all data sets, based on calculated coefficients of determination and random residual plots. The I-S relationship was consistent among years and locations, with similar slopes for all data sets. For 7 of the 10 data sets and for the pooled data from all locations and years, the estimated slope from the fit of the model ranged from 1.03 to 1.26. Time of disease assessment affected the relationship between incidence and severity; however, the estimated slopes from each assessment time were also close to 1. Based on the width of the 95% prediction interval, severity was estimated more precisely at lower incidence values than at higher values. The number of sampling units and the index of dispersion of disease incidence had only minor effects on the precision with which S was predicted from I. The estimation of mean S from I would substantially reduce the time required to assess Fusarium head blight in field surveys and treatment comparisons, and the observed relationship between I and S could be used to identify genotypes with some types of disease resistance.
Survival of Xiphinema index in Vineyard Soil and Retention of Grapevine fanleaf virus Over Extended Time in the Absence of Host Plants
Authors: Demangeat Gérard , Voisin Roger , Minot Jean-Claude , Bosselut Nathalie , Fuchs Marc , Esmenjaud Daniel
Published: May 2007

Grapevine fanleaf virus (GFLV) is transmitted specifically from grapevine to grapevine by the ectoparasitic root-feeding nematode Xiphinema index. Limited information is available on the survival of X. index in vineyard soil and on the retention of GFLV by X. index over extended periods of time. We addressed these two issues by quantifying the numbers of living X. index recovered from soil samples that were collected in three naturally GFLV-infected vineyards in France and subsequently stored at 7 or 20°C in the absence of host plants. Our data indicated a two- to eightfold decrease in X. index numbers but the recovery of 8 to 10 living fourth-stage juveniles (J4) and adults per kilogram of soil after 4 years of storage regardless of temperature. In addition, GFLV was detected readily in all groups of 20 isolated X. index adults and J4 (except for J4 that were kept 4 years at 20°C) by reverse transcription-polymerase chain reaction using total nematode RNAs and a primer set located in conserved regions at the 3′ end of viral genomic RNA 2. Our findings on the long-term survival of viruliferous X. index under adverse conditions emphasize the need for new control strategies against GFLV.
Foliar Spray of Validamycin A or Validoxylamine A Controls Tomato Fusarium Wilt
Authors: Ishikawa Ryo , Shirouzu Kentaro , Nakashita Hideo , Lee Han-Young , Motoyama Takayuki , Yamaguchi Isamu , Teraoka Tohru , Arie Tsutomu
Published: May 2007

Tomato wilt, caused by the soilborne fungus Fusarium oxysporum f. sp. lycopersici, is effectively controlled by a foliar spray of validamycin A (VMA) or validoxylamine A (VAA) (≥10 μg/ml); however, neither VMA nor VAA is antifungal in vitro. In pot tests, the effect of a foliar application of VMA or VAA at 100 μg/ml lasted for 64 days. Plants sprayed with VMA or VAA accumulated salicylic acid and had elevated expression of the systemic acquired resistance (SAR) marker genes P4 (PR-1), Tag (PR-2), and NP24 (PR-5). Foliar spray of VMA also controlled late blight and powdery mildew of tomato. The disease control by VMA and VAA lasted up to 64 days after treatment, was broad spectrum, and induced the expression of PR genes, all essential indicators of SAR, suggesting that VMA and VAA are plant activators. The foliar application of plant activators is a novel control method for soilborne diseases and may provide an economically feasible alternative to soil fumigants such as methyl bromide.
Relationship Between Visual Estimates of Fusarium Head Blight Intensity and Deoxynivalenol Accumulation in Harvested Wheat Grain: A Meta-Analysis
Authors: Paul P. A. , Lipps P. E. , Madden L. V.
Published: May 2007

The association between Fusarium head blight (FHB) intensity and deoxynivalenol (DON) accumulation in harvested grain is not fully understood. A quantitative review of research findings was performed to determine if there was a consistent and significant relationship between measures of Fusarium head blight intensity and DON in harvested wheat grain. Results from published and unpublished studies reporting correlations between DON and Fusarium head blight “index” (IND; field or plot-level disease severity), incidence (INC), diseased-head severity (DHS), and Fusarium-damaged kernels (FDK) were analyzed using meta-analysis to determine the overall magnitude, significance, and precision of these associations. A total of 163 studies was analyzed, with estimated correlation coefficients (r) between -0.58 and 0.99. More than 65% of all r values were >0.50, whereas less that 7% were <0. The overall mean correlation coefficients for all relationships between DON and disease intensity were significantly different from zero (P < 0.001). Based on the analysis of Fisher-transformed r values ( zr values), FDK had the strongest relationship with DON, with a mean r of 0.73, followed by IND (r = 0.62), DHS (r = 0.53), and INC (r = 0.52). The mean difference between pairs of transformed zr values (zd ) was significantly different from zero for all pairwise comparisons, except the comparison between INC and DHS. Transformed correlations were significantly affected by wheat type (spring versus winter wheat), study type (fungicide versus genotype trials), and study location (U.S. spring- and winter-wheat-growing regions, and other wheat-growing regions). The strongest correlations were observed in studies with spring wheat cultivars, in fungicide trials, and in studies conducted in U.S. spring-wheat-growing regions. There were minor effects of magnitude of disease intensity (and indirectly, environment) on the transformed correlations.
Identification of a New Phytophthora Species Causing Root and Runner Rot of Cranberry in New Jersey
Authors: Polashock James J. , Vaiciunas Jennifer , Oudemans Peter V.
Published: May 2007

In New Jersey, Phytophthora cinnamomi is the pathogen most commonly isolated from diseased roots and runners of the cultivated cranberry (Vaccinium macrocarpon). A second distinct species of Phytophthora has been isolated from dying cranberry plants and surface irrigation water. This species is homothallic with paragynous antheridia and ellipsoid-limoniform, nonpapillate sporangia. It was tentatively identified as P. megasperma in an earlier report. Laboratory experiments demonstrate that the cardinal temperatures for vegetative growth are between 5 and 30°C with an optimum near 25°C. Sporangia are produced at temperatures between 10 and 20°C with the majority of sporangia produced at 10 and 15°C. In pathogenicity tests, no growth effect was observed on cranberry plants (cv. Early Black) when tests were conducted at 25°C; however, significant reductions in plant growth occurred when tests were conducted at 15°C. This species was insensitive to metalaxyl but was sensitive to buffered phosphorous acid. Sequence analysis of the internal transcribed spacer 1 (ITS1), 5.8S rDNA, and ITS2 regions place these isolates in Phytophthora clade 6 with greatest similarity to Phytophthora taxon raspberry. To our knowledge, this is the first report of isolates of this affiliation in North America. However, the observation of low temperature preferences makes this species unique in an otherwise high temperature clade. The isolates described in this study are tentatively classified as Phytophthora taxon cranberry.
Effect of the Biocontrol Yeast Rhodotorula glutinis Strain LS11 on Patulin Accumulation in Stored Apples
Authors: Castoria Raffaello , Morena Valeria , Caputo Leonardo , Panfili Gianfranco , De Curtis Filippo , De Cicco Vincenzo
Published: May 2007

Contamination of apples (Malus domestica) and derived juices with fungicide residues and patulin produced by Penicillium expansum are major issues of food safety. Biocontrol agents represent an alternative or supplement to chemicals for disease control. Our data show that these microbes could also contribute to actively decreasing patulin accumulation in apples. Three biocontrol agents, Rhodotorula glutinis LS11, Cryptococcus laurentii LS28, and Aureobasidium pullulans LS30, were examined for their in vitro growth in the presence of patulin and for their capability to decrease mycotoxin recovery from the medium. Strain LS11 yielded the highest growth rates and the greatest decrease of toxin recoveries. Further, it caused the appearance of two major spots on thin-layer chromatography (TLC) plates, suggesting possible metabolization of the mycotoxin. In vivo, i.e., in the low percentage of LS11-pretreated apples infected by P. expansum, patulin accumulation was significantly lower than in nontreated infected fruits. Yeast cells survived and increased in infected apples and, in a model system emulating decaying apple, resulted in accelerated breakdown of patulin and the production of the same TLC spots as those detected in vitro. These data suggest that biocontrol yeast cells surviving in decaying apples could metabolize patulin and/or negatively affect its accumulation or synthesis. To our knowledge, this is the first report describing the effect of a biocontrol agent on patulin accumulation in vivo.
Molecular Diagnostics, Taxonomy, and Phylogeny of the Stem Nematode Ditylenchus dipsaci Species Complex Based on the Sequences of the Internal Transcribed Spacer-rDNA
Authors: Subbotin Sergei A. , Madani Mehrdad , Krall Eino , Sturhan Dieter , Moens Maurice
Published: May 2007

The stem nematode Ditylenchus dipsaci is of great economic importance worldwide as a parasite of agricultural crops and horticultural plants. The internal transcribed spacer (ITS) of rDNA from 23 populations of the D. dipsaci complex from various host plants were amplified and sequenced. Seven previously studied populations were also included in the study. The phylogenetic analysis of the full ITS and ITS2 sequence alignments using minimum evolution, maximum parsimony, and Bayesian inference under the complex model of DNA evolution revealed trees with two main clades: (i) D. dipsaci sensu stricto with diploid chromosome numbers and comprising most isolates from agricultural, ornamental, and several wild plants, and (ii) Ditylenchus spp. with polyploid chromosome numbers, reproductively isolated from diploid populations, and subdivided into six subclades (“giant race” from Vicia faba, Ditylenchus species parasitizing various Asteraceae, and a Ditylenchus sp. from Plantago maritima). Using the energy minimization approach and comparative sequence analysis, it has been found that the secondary structure of ditylenchid ITS2 is organized in three main domains. The importance of knowledge on the RNA structure for phylogenetic analysis is discussed. Conventional polymerase chain reaction (PCR) and real-time PCR with SYBR green dye I with a species specific primer have been developed for detection and quantification of D. dipsaci sensu stricto Validation tests revealed a rather high correlation between real numbers of fourth-stage juveniles of the stem nematodes in a sample and expected numbers detected by real-time PCR. Problems of accuracy of quantification are discussed.
Pseudomonas syringae pv. coryli, the Causal Agent of Bacterial Twig Dieback of Corylus avellana
Authors: Scortichini Marco , Rossi Maria Pia , Loreti Stefania , Bosco Adriana , Fiori Mario , Jackson Robert W. , Stead David E. , Aspin Andy , Marchesi Ugo , Zini Maurizio , Janse Jaap D.
Published: May 2007

Thirty-eight bacterial strains isolated from hazelnut (Corylus avellana) cv. Tonda Gentile delle Langhe showing a twig dieback in Piedmont and Sardinia, Italy, were studied by a polyphasic approach. All strains were assessed by fatty acids analysis and repetitive sequence-based polymerase chain reaction (PCR) fingerprinting using BOX and ERIC primer sets. Representative strains also were assessed by sequencing the 16S rDNA and hrpL genes, determining the presence of the syrB gene, testing their biochemical and nutritional characteristics, and determining their pathogenicity to hazelnut and other plants species or plant organs. Moreover, they were compared with reference strains of other phytopathogenic pseudomonads. The strains from hazelnut belong to Pseudomonas syringae (sensu latu), LOPAT group Ia. Both fatty acids and repetitive-sequence-based PCR clearly discriminate such strains from other Pseudomonas spp., including P. avellanae and other P. syringae pathovars as well as P. syringae pv. syringae strains from hazelnut. Also, the sequencing of 16S rDNA and hrpL genes differentiated them from P. avellanae and from P. syringae pv. syringae. They did not possess the syrB gene. Some nutritional tests also differentiated them from related P. syringae pathovars. Upon artificial inoculation, these strains incited severe twig diebacks only on hazelnut. Our results justify the creation of a new pathovar because the strains from hazelnut constitute a homogeneous group and a discrete phenon. The name of P. syringae pv. coryli is proposed and criteria for routine identification are presented.
Environmental Influences on the Release of Ophiosphaerella agrostis Ascospores Under Controlled and Field Conditions
Authors: Kaminski John E. , Dernoeden Peter H. , O'Neill Nichole R.
Published: May 2007

Ophiosphaerella agrostis, the causal agent of dead spot of creeping bentgrass (Agrostis stolonifera), can produce prodigious numbers of pseudothecia and ascospores throughout the summer. The environmental conditions and seasonal timings associated with O. agrostis ascospore release are unknown. The objectives of this research were to (i) determine the influence of light and relative humidity on ascospore release in a controlled environment, (ii) document the seasonal and daily discharge patterns of ascospores in the field, and (iii) elucidate environmental conditions that promote ascospore release under field conditions. In a growth chamber, a sharp decrease (100 to ≈50%; 25°C) in relative humidity resulted in a rapid (1- to 3-h) discharge of ascospores, regardless of whether pseudothecia were incubated in constant light or dark. In the field, daily ascospore release increased between 1900 and 2300 h and again between 0700 and 1000 h local time. The release of ascospores occurred primarily during the early morning hours when relative humidity was decreasing and the canopy began to dry, or during evening hours when relative humidity was low and dew began to form. Few ascospores were released between 1100 and 1800 h when the bentgrass canopy was dry. The release of ascospores also was triggered by precipitation. Of the ascospores collected during precipitation events, 87% occurred within 10 h of the beginning of each event.
High Genetic Diversity Among Strains of Fusarium oxysporum f. sp. vasinfectum from Cotton in Ivory Coast
Authors: Abo Kouabenan , Klein Keith K. , Edel-Hermann Véronique , Gautheron Nadine , Traore Dossahoua , Steinberg Christian
Published: May 2007

Seventeen isolates of Fusarium oxysporum f. sp. vasinfectum from the Ivory Coast were characterized using vegetative compatibility group (VCG), restriction fragment length polymorphism of the ribosomal inter-genic spacer region (IGS), and mating type (MAT) idiomorph, and compared with a worldwide collection of the pathogen containing all available reference strains. Some of the isolates were identical to known reference strains for all three traits, whereas others had previously unknown varieties of IGS and (possibly) VCG. One or the other MAT idiomorph was present in each of the new isolates and the reference strains. The new isolates and reference strains were grouped based upon the three traits. Strains from the Ivory Coast were found in 7 of 11 groups detected, suggesting multiple sources for Fusarium wilt in the country. Despite the presence of both MAT idiomorphs among isolates, no evidence for recombination was found.
Real-Time Polymerase Chain Reaction Quantification of Phytophthora capsici in Different Pepper Genotypes
Authors: Silvar C. , Díaz J. , Merino F.
Published: May 2007

Reliable and sensitive quantification of Phytophthora capsici in pepper plants is of crucial importance in managing the multiple syndromes caused by this pathogen. A real-time polymerase chain reaction (PCR) assay was developed for the determination of P. capsici in pepper tissues. DNA levels of a highly virulent and a less virulent isolate were measured in different pepper genotypes with varying degrees of resistance. Using SYBR Green and specific primers for P. capsici, the minimal amount of pathogen DNA quantified was 10 pg. Pathogen DNA was recorded as early as 8 h postinoculation. Thereafter, the increase was rapid in susceptible cultivars and slower in resistant ones. The amount of pathogen DNA quantified in each pepper genotype correlated with susceptibility to Phytophthora root rot. Likewise, there was a relationship between the virulence of the pathogen and the degree of colonization. Differences also were found in oomycete amount among pepper tissues, with maximal pathogen biomass occurring in stems. The real-time PCR technique developed in this study was sensitive and robust enough to assess both pathogen development and resistance to Phytophthora root rot in different pepper genotypes.
Development of Crown and Root Rot Disease of Tomato Under Irrigation with Saline Water
Authors: Triky-Dotan Shachaf , Yermiyahu Uri , Katan Jaacov , Gamliel Abraham
Published: May 2007

We studied the effect of water salinity on the incidence and severity of crown and root rot disease of tomato, as well as on the pathogen and on the plant's response to the pathogen. Irrigation with saline water significantly increased disease severity in tomato transplants inoculated with Fusarium oxysporum f. sp. radicis-lycopersici, and mineral fertilization further increased it. In one field experiment, disease incidence in plots irrigated with saline water (electrical conductivity [EC] = 3.2 ± 0.1 dS m-1) and in those irrigated with fresh water (EC = 0.4 ± 0.1 dS m-1) was 75 and 38%, respectively. Disease onset was earlier and yield was lower in plots irrigated with saline water. In a second field experiment, final disease incidence 250 days after planting, was 12% in plants which had been irrigated with saline water (EC = 4.6 ± 0.1 dS m-1) and 4% in those irrigated with fresh water (EC = 1.2 ± 0.1 dS m-1). Irrigation of tomato transplants with 20 mM NaCl did not inhibit plant development, but partial inhibition was observed at higher NaCl concentrations. Growth of the pathogen in culture or survival of conidia added to soil were not affected by saline water. Plants which were preirrigated with saline water were more severely diseased than those preirrigated with tap water. It was concluded that disease increases effected by saline water are associated with the latter's effect on plant response.
Seasonal Development of Ontogenic Resistance to Downy Mildew in Grape Berries and Rachises
Authors: Kennelly Megan M. , Gadoury David M. , Wilcox Wayne F. , Magarey Peter A. , Seem Robert C.
Published: May 2007

Clusters of Vitis vinifera and V. labrusca are reported to become resistant to Plasmopara viticola at stages of development ranging from 1 to 6 weeks postbloom. It has been suggested that resistance is associated with loss of the infection court as stomata are converted to lenticels, but the time of onset, cultivar variation, and seasonal variation in ontogenic resistance has remained uncertain, as has the comparative susceptibility of stem tissue within the fruit cluster. In New York, we inoculated clusters of V. vinifera cvs. Chardonnay and Riesling and V. labrusca cvs. Concord and Niagara at stages from prebloom until 5 to 6 weeks postbloom. Berries were infected and supported profuse sporulation until 2 weeks postbloom, and pedicel tissue remained susceptible until 4 weeks postbloom. Although berries on later-inoculated clusters failed to support sporulation, discoloration and necrosis of berry tissues was often noted, and necrosis of the pedicel within such clusters often led to further discoloration, shriveling, reduced size, or loss of berries. When the epidermis of discolored berries that initially failed to support sporulation was cut, the pathogen emerged and sporulated through incisions, indicating that lack of sporulation on older symptomatic berries was due to infection at an early stage of berry development followed by conversion of functional stomata to lenticels during latency. We repeated the study on Chardonnay and Riesling vines in South Australia and found that the period of berry and rachis susceptibility was greatly increased. The protracted susceptibility of the host was related to the increased duration and phenological heterogeneity of bloom and berry development in the warmer climate of South Australia. The time of onset and subsequent expression of ontogenic resistance to P. viticola may thus be modified by climate and should be weighed in transposing results from one climatic area to another. Our results can be used to refine forecast models for grapevine downy mildew to account for changes in berry and rachis susceptibility, and to focus fungicide application schedules upon the most critical periods for protection of fruit.