bluuebunny/crossref_metadata_2025 huggingface dataset:
A Low-Profile Wideband Linear-to-Circular Polarization Conversion Slot Antenna Using Metasurface
Authors: Dong Jian , Ding Chang , Mo Jinjun
Published: March 2020

A new low-profile wideband linear-to-circular polarization conversion microstrip slot antenna based on a metasurface for C-band satellite communication applications is proposed in this paper. The metasurface basically consists of four unit cells with parasitic square cross gaps arranged in a 2 × 2 layout. By loading the metasurface on the microstrip slot antenna, linearly polarized (LP) waves from the source antenna are converted into circularly polarized (CP) waves. Then, by etching three more parasitic square cross gaps in the middle of the metasurface, enhanced impedance bandwidth and axial ratio bandwidth (ARBW) are achieved. Furthermore, an equivalent circuit and a phase analysis are presented to explain how a wide ARBW is realized by the metasurface. A final model with an overall size of 36 × 36 × 3.5 mm3 (approximately 0.65λ0 × 0.65λ0 × 0.06λ0 at 5.5 GHz) was designed and fabricated. The measured S11 bandwidth and 3 dB ARBW were 39.25% from 4.28 GHz to 6.37 GHz and 17.77% from 5.18 GHz to 6.19 GHz, respectively. As a result, the proposed antenna shows great potential for satellite communication applications due to its low profile and compact structure, wide impedance bandwidth, and wide axial ratio bandwidth.
Comparison of A 1940 nm Thulium-Doped Fiber Laser and A 1470 nm Diode Laser for Cutting Efficacy and Hemostasis in A Pig Model of Spleen Surgery
Authors: Żywicka Bogusława , Rybak Zbigniew , Janeczek Maciej , Czerski Albert , Bujok Jolanta , Szymonowicz Maria , Dobrzyński Maciej , Korczyński Mariusz , Świderski Jacek
Published: March 2020

Partial and total splenectomies are associated with a high risk of substantial blood loss. Lasers operating at wavelengths strongly absorbed by water have the potential to improve hemostasis and cut while providing a narrow zone of thermal damage. The aim of this study is to compare a thulium-doped fiber laser (TDFL) emitting a wavelength of 1940 nm and a diode laser (DL) operating at 1470 nm for spleen surgery in a pig model. A partial splenectomy and spleen incisions were made in 12 animals using the two laser devices. The hemostasis was evaluated visually during surgeries. Post-mortem and histopathological evaluations were done on days 0, 7, and 14 following surgery. Neither TDFL nor DL caused bleeding on day 0 or delayed bleeding. On day 14, pale streaks at the site of incision were slightly wider after cutting with DL than with TDFL. Histological analysis revealed a carbonized zone with exudation and a deeper zone of thermal tissue damage on day 0. The width of the thermal changes was 655.26 ± 107.70 μm for TDFL and 1413.37 ± 111.85 μm for DL. On day 7, a proliferation of fibroblasts and splenocytes was visible, as well as a formation of multinucleated giant cells adjacent to the residues of carbonization. The zone of thermal damage was broader for DL (1157.5 ± 262.77 μm) than for TDFL (682.22 ± 116.58 μm). On day 14, cutting sites were filled with connective and granulation tissues with the residues of carbonization. The zone of thermal damage was narrower for TDFL (761.65 ± 34.3 μm) than for DL (1609.82 ± 202.22 μm). Thus, both lasers are efficient in spleen surgery, providing good hemostasis. However, TDFL produces a narrower zone of thermal damage, which suggests its better efficiency for spleen surgery, especially when performing more precise procedures.
Effect of Wall Thickness on Stress–Strain Response and Buckling Behavior of Hollow-Cylinder Rubber Fenders
Authors: Shen Ming-Yuan , Chiou Yung-Chuan , Tan Chung-Ming , Wu Chia-Chin , Chen Wei-Jen
Published: March 2020

In this study, the effect of wall thickness (15–25 mm) on the stress–strain response of hollow-cylinder rubber fenders were investigated by conducting monotonic compression tests. It was found that a progressive increase in lateral bending deformation was observed during monotonic compression. Simultaneously, the extent of the lateral deflection decreased notably with an increasing wall thickness. From the experimental results, the fact is accepted that buckling occurred in the tested fender due to the fact that the ratio of the height to the wall thickness was higher than four in all of the considered cases. Moreover, an s-shape profile appeared in the stress–strain curves, which became clearer as the wall thickness was reduced from 25 to 15 mm. To assess the performance of fenders objectively, an energy-effectiveness index, C E R , was introduced to quantify the energy absorption capacity of the fender. From the experimental observations, it was inferred that the contact area of the folded inner surface of the fender produced under compression generated an additional reaction force and affected the shape of the stress–strain curve since the measured load consisted of two reaction forces: one caused by the self-contact area, and the other resulted from the compression-bending deformation that occurred in the side wall of the fender. To examine this assertion, a finite element analysis (FEA) was conducted and confirmed the effect of the reaction force on the sensitivity of the s-shape characteristic of the stress–strain curve. Finally, a polynomial regression was conducted and the calculated results based on the fourth-degree stress polynomial function correlated very well with the measured stress–strain curves.
Size Effect in Compressive Strength Tests of Cored Specimens of Lightweight Aggregate Concrete
Authors: Domagała Lucyna
Published: March 2020

The aim of this paper is to discuss the unrecognized problem of the scale effect in compressive strength tests determined for cored specimens of lightweight aggregate concrete (LWAC) against the background of available data on the effect for normal-weight concrete (NWAC). The scale effect was analyzed taking into consideration the influence of slenderness (λ = 1.0, 1.5, 2.0) and diameter (d = 80, 100, 125, and 150 mm) of cored specimens, as well as the type of lightweight aggregate (expanded clay and sintered fly ash) and the type of cement matrix (w/c = 0.55 and 0.37). The analysis of the results for four lightweight aggregate concretes revealed no scale effect in compressive strength tests determined on cored specimens. Neither the slenderness, nor the core diameter seemed to affect the strength results. This fact should be explained by the considerably better structural homogeneity of the tested lightweight concretes in comparison to normal-weight ones. Nevertheless, there were clear differences between the results obtained on molded and cored specimens of the same shape and size.
Synthesis and Sorption Properties towards Sr-90 of Composite Sorbents Based on Magnetite and Hematite
Authors: Egorin Andrei , Tokar Eduard , Kalashnikova Anastasia , Sokolnitskaya Tatiana , Tkachenko Ivan , Matskevich Anna , Filatov Evgeny , Zemskova Larisa
Published: March 2020

The article describes the synthesis of composite sorbents by immobilizing iron oxide in a polymer matrix with subsequent hydrothermal treatment at a temperature of 175 °C. The sorbents based on magnetite and hematite were synthesized, their magnetic properties and phase composition were evaluated, and the iron content was determined. Sorption characteristics of the composites towards microconcentrations of Sr-90 radionuclide in solutions with different mineralization and pH were investigated. It was shown that the sorbent based on magnetite was the most efficient. In alkaline media with pH above 11, the composite sorbent based on magnetite exhibited increased selectivity towards Sr-90 and proved to be suitable for application under dynamic sorption conditions with subsequent desorption of the radionuclide with a solution of HNO3.
Optimal Hot-Dipped Tinning Process Routine for the Fabrication of Solderable Sn Coatings on Circuit Lead Frames
Authors: Yin Ting , Xiang Nan , Wang Guangxin , Tian Baohong , Sun Wanting , Zhang Xiaoyu
Published: March 2020

Previous studies merely focus on the hot dipping properties of lead frame materials used in electronic industry. Yet, the environmentally friendly and cost-efficient traits of hot-dipped tinning process make it a possible promising surface modification technique compared with electroplating. As a result, the optimal hot-dipped tinning process routine is proposed in this paper. The hot-dipped tinning process of four different types of copper foils (C11000, C19400, C19210, and C70250), pretreatment parameters, mechanical properties of Cu substrates, thickness of IMC (intermetallic compound) layers and coatings, and microstructure of coatings were investigated to determine the copper substrate suitable for hot-dipped tinning and the optimized tinning procedures. The results indicate that a proper increase in alloying elements (e.g., Cu-Fe-P series alloys) towards Cu substrate leads to a decrease in hot dipping performance. The proper process routine is determined as alkaline cleaning→water scrubbing→accelerant solvent dipping→drying→hot-dipped tinning→cooling. The appropriate dipping temperature range is 260 to 280 °C, which assists to maintain acceptable micro hardness (i.e., maintaining at least 95% of the original hardness). The optimal dipping time should be set as 6–10 s. The proposed hot-dipped tinning process routine may present a guideline for the fabrication of tin coating in electronic industry.
Spirulina Lipids Alleviate Oxidative Stress and Inflammation in Mice Fed a High-Fat and High-Sucrose Diet
Authors: Yang Yuhong , Du Lei , Hosokawa Masashi , Miyashita Kazuo
Published: March 2020

High-fat and high-sucrose diet (HFHSD)-induced obesity leads to oxidative stress and chronic inflammatory status. However, little is known about the beneficial effects of total lipids extracted from Spirulina. Hence, in the present study, Spirulina lipids were extracted with chloroform/methanol (SLC) or ethanol (SLE) and then their effects on oxidative stress and inflammation in the mice fed a HFHSD were investigated. The results show that the major lipid classes and fatty acid profiles of SLC and SLE were almost similar, but the gamma-linolenic acid (GLA) and carotenoid contents in SLE was a little higher than that in SLC. Dietary 4% SLC or SLE for 12 weeks effectively decreased the hepatic lipid hydroperoxide levels as well as increased the activities and mRNA levels of antioxidant enzymes in the mice fed a HFHSD. In addition, supplementation with SLC and SLE also markedly decreased the levels of serum pro-inflammatory cytokines and the mRNA expression of pro-inflammatory cytokines in the liver and epididymal white adipose tissue of mice fed a HFHSD, and the effects of SLC and SLE were comparable. These findings confirm for the first time that dietary Spirulina lipids could alleviate HFHSD-induced oxidative stress and inflammation.
Synthesis, Pharmacological and Structural Characterization of Novel Conopressins from Conus miliaris
Authors: Giribaldi Julien , Ragnarsson Lotten , Pujante Tom , Enjalbal Christine , Wilson David , Daly Norelle L. , Lewis Richard J. , Dutertre Sebastien
Published: March 2020

Cone snails produce a fast-acting and often paralyzing venom, largely dominated by disulfide-rich conotoxins targeting ion channels. Although disulfide-poor conopeptides are usually minor components of cone snail venoms, their ability to target key membrane receptors such as GPCRs make them highly valuable as drug lead compounds. From the venom gland transcriptome of Conus miliaris, we report here on the discovery and characterization of two conopressins, which are nonapeptide ligands of the vasopressin/oxytocin receptor family. These novel sequence variants show unusual features, including a charge inversion at the critical position 8, with an aspartate instead of a highly conserved lysine or arginine residue. Both the amidated and acid C-terminal analogues were synthesized, followed by pharmacological characterization on human and zebrafish receptors and structural investigation by NMR. Whereas conopressin-M1 showed weak and only partial agonist activity at hV1bR (amidated form only) and ZFV1a1R (both amidated and acid form), both conopressin-M2 analogues acted as full agonists at the ZFV2 receptor with low micromolar affinity. Together with the NMR structures of amidated conopressins-M1, -M2 and -G, this study provides novel structure-activity relationship information that may help in the design of more selective ligands.
A Cross-Sectional Study of Obesity Effects on the Metabolomic Profile of a Leptin-Resistant Swine Model
Authors: Sanz-Fernandez M. Victoria , Torres-Rovira Laura , Pesantez-Pacheco Jose L. , Vazquez-Gomez Marta , Garcia-Contreras Consolacion , Astiz Susana , Gonzalez-Bulnes Antonio
Published: March 2020

Identifying metabolite signatures associated with obesity and related diseases might represent a valuable preventive and therapeutic tool to predict subjects at risk, establish an accurate prognosis, and monitor treatment success. The current cross-sectional study is aimed to evaluate the metabolite profile of diet-induced obesity in a porcine model of leptin resistance. Six Iberian female pigs prone to develop obesity (OB) were ad libitum fed a fat-enriched diet (HFD) for 82 days. Five lean Iberian sows (CON) in a maintenance diet served as controls. At the end of the dietary treatments, all animals were sacrificed, and plasma, liver, and muscle samples were immediately collected for nuclear magnetic resonance analysis. In plasma, signals corresponding to betaine, glycerophosphocholine/phosphocholine, glycine, and glutamate were decreased; and the valine signal was increased in OB sows compared to controls. Similarly, the betaine signal was decreased in the liver. No differences were detected in muscle. The observed metabolite changes suggest alterations in branched chain amino-acid metabolism and the methionine-homocysteine cycle, which have been previously associated with obesity-related diseases and type 2 diabetes in human observational studies. The current study supports the utilization of the leptin resistant Iberian pig for further interventional research in the field.
Food Targeting: Determination of the Cocoa Shell Content (Theobroma cacao L.) in Cocoa Products by LC-QqQ-MS/MS
Authors: Cain Nicolas , Marji Christian , von Wuthenau Kristian , Segelke Torben , Fischer Markus
Published: March 2020

A targeted metabolomics LC-ESI-QqQ-MS/MS application for the determination of cocoa shell based on 15 non-polar key metabolites was developed, validated according to recognized guidelines, and used to predict the cocoa shell content in various cocoa products. For the cocoa shell prediction, different PLSR models based on different cocoa shell calibration series were developed and their suitability and prediction quality were compared. By analysing samples from different origins and harvest years with known shell content, the prediction model could be confirmed. The predicted shell content could be verified with a deviation of about 1% cocoa shell. The presented method demonstrates the suitability of the targeted application of metabolomic profiling for the determination of cocoa shell and its applicability in routine analysis is discussed.
Anion Inhibition Studies of the β-Class Carbonic Anhydrase CAS3 from the Filamentous Ascomycete Sordaria macrospora
Authors: Vullo Daniela , Lehneck Ronny , Donald William A. , Pöggeler Stefanie , Supuran Claudiu T.
Published: March 2020

CAS3 is a newly cloned cytosolic β-class carbonic anhydrase (CA, EC 4.2.1.1) from the filamentous ascomycete Sordaria macrospora. This enzyme has a high catalytic activity for the physiological CO2 hydration reaction and herein, we report the inhibition profile of CAS3 with anions and small molecules. The most effective CAS3 anions/small molecule inhibitors were diethyl-dithiocarbamate, sulfamide, sulfamate, phenyl boronic and phenyl arsonic acids, with KIs in the range of 0.89 mM–97 µM. Anions such as iodide, the pseudohalides, bicarbonate, carbonate, nitrate, nitrite, hydrogensulfide, stannate, selenate, tellurate, tetraborate, perrhenate, perruthenate, selenocyanide and trithiocarbonate were low millimolar CAS3 inhibitors. The light halides, sulfate, hydrogensulfite, peroxydisulfate, diphosphate, divanadate, perchlorate, tetrafluoroborate, fluorosulfonate and iminodisulfonate did not significantly inhibit this enzyme. These data may be useful for developing antifungals based on CA inhibition, considering the fact that many of the inhibitors reported here may be used as lead molecules and, by incorporating the appropriate organic scaffolds, potent nanomolar inhibitors could be developed.
The Influence of Electron Beam Sterilization on In Vivo Degradation of β-TCP/PCL of Different Composite Ratios for Bone Tissue Engineering
Authors: Kang Jin-Ho , Kaneda Janelle , Jang Jae-Gon , Sakthiabirami Kumaresan , Lui Elaine , Kim Carolyn , Wang Aijun , Park Sang-Won , Yang Yunzhi Peter
Published: March 2020

We evaluated the effect of electron beam (E-beam) sterilization (25 kGy, ISO 11137) on the degradation of β-tricalcium phosphate/polycaprolactone (β-TCP/PCL) composite filaments of various ratios (0:100, 20:80, 40:60, and 60:40 TCP:PCL by mass) in a rat subcutaneous model for 24 weeks. Volumes of the samples before implantation and after explantation were measured using micro-computed tomography (micro-CT). The filament volume changes before sacrifice were also measured using a live micro-CT. In our micro-CT analyses, there was no significant difference in volume change between the E-beam treated groups and non-E-beam treated groups of the same β-TCP to PCL ratios, except for the 0% β-TCP group. However, the average volume reduction differences between the E-beam and non-E-beam groups in the same-ratio samples were 0.76% (0% TCP), 3.30% (20% TCP), 4.65% (40% TCP), and 3.67% (60% TCP). The E-beam samples generally had more volume reduction in all experimental groups. Therefore, E-beam treatment may accelerate degradation. In our live micro-CT analyses, most volume reduction arose in the first four weeks after implantation and slowed between 4 and 20 weeks in all groups. E-beam groups showed greater volume reduction at every time point, which is consistent with the results by micro-CT analysis. Histology results suggest the biocompatibility of TCP/PCL composite filaments.
Streptomyces lydicamycinicus sp. nov. and Its Secondary Metabolite Biosynthetic Gene Clusters for Polyketide and Nonribosomal Peptide Compounds
Authors: Komaki Hisayuki , Hosoyama Akira , Igarashi Yasuhiro , Tamura Tomohiko
Published: March 2020

(1) Background: Streptomyces sp. TP-A0598 derived from seawater produces lydicamycin and its congeners. We aimed to investigate its taxonomic status; (2) Methods: A polyphasic approach and whole genome analysis are employed; (3) Results: Strain TP-A0598 contained ll-diaminopimelic acid, glutamic acid, glycine, and alanine in its peptidoglycan. The predominant menaquinones were MK-9(H6) and MK-9(H8), and the major fatty acids were C16:0, iso-C15:0, iso-C16:0, and anteiso-C15:0. Streptomyces sp. TP-A0598 showed a 16S rDNA sequence similarity value of 99.93% (1 nucleottide difference) to Streptomyces angustmyceticus NRRL B-2347T. The digital DNA–DNA hybridisation value between Streptomyces sp. TP-A0598 and its closely related type strains was 25%–46%. Differences in phenotypic characteristics between Streptomyces sp. TP-A0598 and its phylogenetically closest relative, S. angustmyceticus NBRC 3934T, suggested strain TP-A0598 to be a novel species. Streptomyces sp. TP-A0598 and S. angustmyceticus NBRC 3934T harboured nine and 13 biosynthetic gene clusters for polyketides and nonribosomal peptides, respectively, among which only five clusters were shared between them, whereas the others are specific for each strain; and (4) Conclusions: For strain TP-A0598, the name Streptomyces lydicamycinicus sp. nov. is proposed; the type strain is TP-A0598T (=NBRC 110027T).
New Insights into the Mineralogy and Geochemistry of Sb Ores from Greece
Authors: Tzamos Evangelos , Gamaletsos Platon N. , Grieco Giovanni , Bussolesi Micol , Xenidis Anthimos , Zouboulis Anastasios , Dimitriadis Dimitrios , Pontikes Yiannis , Godelitsas Athanasios
Published: March 2020

Antimony is a common metalloid occurring in the form of Sb-sulfides and sulfosalts, in various base and noble metal deposits. It is also present in corresponding metallurgical products (concentrates) and, although antimony has been considered a penalty element in the past, recently it has gained interest due to its classification as a critical raw material (CRM) by the European Union (EU). In the frame of the present paper, representative ore samples from the main Sb-bearing deposits of Greece (Kilkis prefecture, Chalkidiki prefecture (Kassandra Mines), and Chios Isl.) have been investigated. According to optical microscopy and electron probe microanalysis (EPMA) data, the Greek ores contain stibnite (Sb2S3), boulangerite (Pb5Sb4S11), bournonite (PbCuSbS3), bertherite (FeSbS4), and valentinite (Sb2O3). Bulk analyses by inductively coupled plasma mass spectrometry (ICP-MS) confirmed, for the first time published, the presence of a significant Hg content in the Kilkis Sb-ore. Furthermore, Kassandra Mines ores are found to contain remarkable amounts of Bi, As, Sn, Tl, and Se (excluding Ag, which is a bonus element). The above findings could contribute to potential future exploration and exploitation of Sb ores in Greece.
In Vitro MCF-7 Cells Apoptosis Analysis of Carboplatin Loaded Silk Fibroin Particles
Authors: Galam Nanyak , Tulay Pinar , Adali Terin
Published: March 2020

Breast cancer ranks as the fifth leading cause of death worldwide. Chemotherapy is commonly used directly or as neo-adjuvant therapy for the management of breast cancer with its attendant adverse effects, underscoring the need to develop biocompatible bioactive compounds for pharmacological applications. The aim of this study is to encapsulate carboplatin (CP) with silk fibroin protein (SF) by using an ionic gelation method as a drug carrier system and assess the apoptotic effect on MCF-7 breast cancer cells during in vitro studies. The characterization of silk fibroin encapsulated carboplatin (SFCP) microparticles was analyzed by FTIR spectrophotometer, SEM, Mastersizer, and biodegradation methods. The encapsulation efficiency and release profile of SFCP microparticles were analyzed by an indirect UV–Vis spectrophotometric method. An apoptotic screening of MCF-7 cells was carried out with 10–200 µg/mL CP loaded SFCP, which were cultured for 24, 48, and 72 h. Data were analyzed using the Student’s t test and analysis of variance. FTIR and drug release studies confirmed an interaction of silk fibroin with the carboplatin moiety. SFCP showed successful encapsulation of the carboplatin moiety. Apoptotic screening showed a dose dependent increase in absorbance, indicating significant cell death (p < 0.05). Thus, the direct apoptotic effect of SFCP microparticles on MCF-7 was confirmed.
Structure-Activity Relationship between Thiol Group-Trapping Ability of Morphinan Compounds with a Michael Acceptor and Anti-Plasmodium falciparum Activities
Authors: Kutsumura Noriki , Koyama Yasuaki , Saitoh Tsuyoshi , Yamamoto Naoshi , Nagumo Yasuyuki , Miyata Yoshiyuki , Hokari Rei , Ishiyama Aki , Iwatsuki Masato , Otoguro Kazuhiko , Ōmura Satoshi , Nagase Hiroshi
Published: March 2020

7-Benzylidenenaltrexone (BNTX) and most of its derivatives showed in vitro antimalarial activities against chloroquine-resistant and -sensitive Plasmodium falciparum strains (K1 and FCR3, respectively). In addition, the time-dependent changes of the addition reactions of the BNTX derivatives with 1-propanethiol were examined by 1H-NMR experiments to estimate their thiol group-trapping ability. The relative chemical reactivity of the BNTX derivatives to trap the thiol group of 1-propanethiol was correlated highly with the antimalarial activity. Therefore, the measurements of the thiol group-trapping ability of the BNTX derivatives with a Michael acceptor is expected to become an alternative method for in vitro malarial activity and related assays.
Even Visually Intact Cell Walls in Waterlogged Archaeological Wood Are Chemically Deteriorated and Mechanically Fragile: A Case of a 170 Year-Old Shipwreck
Authors: Han Liuyang , Tian Xingling , Keplinger Tobias , Zhou Haibin , Li Ren , Svedström Kirsi , Burgert Ingo , Yin Yafang , Guo Juan
Published: March 2020

Structural and chemical deterioration and its impact on cell wall mechanics were investigated for visually intact cell walls (VICWs) in waterlogged archaeological wood (WAW). Cell wall mechanical properties were examined by nanoindentation without prior embedding. WAW showed more than 25% decrease of both hardness and elastic modulus. Changes of cell wall composition, cellulose crystallite structure and porosity were investigated by ATR-FTIR imaging, Raman imaging, wet chemistry, 13C-solid state NMR, pyrolysis-GC/MS, wide angle X-ray scattering, and N2 nitrogen adsorption. VICWs in WAW possessed a cleavage of carboxyl in side chains of xylan, a serious loss of polysaccharides, and a partial breakage of β-O-4 interlinks in lignin. This was accompanied by a higher amount of mesopores in cell walls. Even VICWs in WAW were severely deteriorated at the nanoscale with impact on mechanics, which has strong implications for the conservation of archaeological shipwrecks.
Thermodynamic and Spectroscopic Studies of the Complexes Formed in Tartaric Acid and Lanthanide(III) Ions Binary Systems
Authors: Zabiszak Michal , Nowak Martyna , Hnatejko Zbigniew , Grajewski Jakub , Ogawa Kazuma , Kaczmarek Malgorzata T. , Jastrzab Renata
Published: March 2020

Binary complexes of tartaric acid with lanthanide(III) ions were investigated. The studies have been performed in aqueous solution using the potentiometric method with computer analysis of the data for detection of the complexes set, determination of the stability constants of these compounds. The mode of the coordination of complexes found was determined using spectroscopy, which shows: Infrared, circular dichroism, ultraviolet, visible as well as luminescence spectroscopy. The overall stability constants of the complexes as well as the equilibrium constants of the reaction were determined. Analysis of the equilibrium constants of the reactions and spectroscopic data allowed the effectiveness of the carboxyl groups in the process of complex formation.
One-Pot Production of RNA in High Yield and Purity Through Cleaving Tandem Transcripts
Authors: Feyrer Hannes , Munteanu Raluca , Baronti Lorenzo , Petzold Katja
Published: March 2020

There is an increasing demand for efficient and robust production of short RNA molecules in both pharmaceutics and research. A standard method is in vitro transcription by T7 RNA polymerase. This method is sequence-dependent on efficiency and is limited to products longer than ~12 nucleotides. Additionally, the native initiation sequence is required to achieve high yields, putting a strain on sequence variability. Deviations from this sequence can lead to side products, requiring laborious purification, further decreasing yield. We here present transcribing tandem repeats of the target RNA sequence followed by site-specific cleavage to obtain RNA in high purity and yield. This approach makes use of a plasmid DNA template and RNase H-directed cleavage of the transcript. The method is simpler and faster than previous protocols, as it can be performed as one pot synthesis and provides at the same time higher yields of RNA.
Reducing-End Functionalization of 2,5-Anhydro-d-mannofuranose-Linked Chitooligosaccharides by Dioxyamine: Synthesis and Characterization
Authors: Coudurier Maxence , Faivre Jimmy , Crépet Agnès , Ladavière Catherine , Delair Thierry , Schatz Christophe , Trombotto Stéphane
Published: March 2020

The nitrous acid depolymerization of chitosan enables the synthesis of singular chitosan oligosaccharides (COS) since their reducing-end unit is composed of 2,5-anhydro-d-mannofuranose (amf). In the present study, we describe a chemical method for the reducing-end conjugation of COS-amf by the commercially available dioxyamine O,O′-1,3-propanediylbishydroxylamine in high mass yields. The chemical structure of resulting dioxyamine-linked COS-amf synthesized by both oximation and reductive amination ways were fully characterized by 1H- and 13C-NMR spectroscopies and MALDI-TOF mass spectrometry. The coupling of chemically attractive linkers such as dioxyamines at the reducing end of COS-amf forms a relevant strategy for the development of advanced functional COS-based conjugates.
Evaluating Autoencoder-Based Featurization and Supervised Learning for Protein Decoy Selection
Authors: Alam Fardina Fathmiul , Rahman Taseef , Shehu Amarda
Published: March 2020

Rapid growth in molecular structure data is renewing interest in featurizing structure. Featurizations that retain information on biological activity are particularly sought for protein molecules, where decades of research have shown that indeed structure encodes function. Research on featurization of protein structure is active, but here we assess the promise of autoencoders. Motivated by rapid progress in neural network research, we investigate and evaluate autoencoders on yielding linear and nonlinear featurizations of protein tertiary structures. An additional reason we focus on autoencoders as the engine to obtain featurizations is the versatility of their architectures and the ease with which changes to architecture yield linear versus nonlinear features. While open-source neural network libraries, such as Keras, which we employ here, greatly facilitate constructing, training, and evaluating autoencoder architectures and conducting model search, autoencoders have not yet gained popularity in the structure biology community. Here we demonstrate their utility in a practical context. Employing autoencoder-based featurizations, we address the classic problem of decoy selection in protein structure prediction. Utilizing off-the-shelf supervised learning methods, we demonstrate that the featurizations are indeed meaningful and allow detecting active tertiary structures, thus opening the way for further avenues of research.
Recent Advances in Encapsulation, Protection, and Oral Delivery of Bioactive Proteins and Peptides using Colloidal Systems
Authors: Perry Sarah L. , McClements David Julian
Published: March 2020

There are many areas in medicine and industry where it would be advantageous to orally deliver bioactive proteins and peptides (BPPs), including ACE inhibitors, antimicrobials, antioxidants, hormones, enzymes, and vaccines. A major challenge in this area is that many BPPs degrade during storage of the product or during passage through the human gut, thereby losing their activity. Moreover, many BPPs have undesirable taste profiles (such as bitterness or astringency), which makes them unpleasant to consume. These challenges can often be overcome by encapsulating them within colloidal particles that protect them from any adverse conditions in their environment, but then release them at the desired site-of-action, which may be inside the gut or body. This article begins with a discussion of BPP characteristics and the hurdles involved in their delivery. It then highlights the characteristics of colloidal particles that can be manipulated to create effective BPP-delivery systems, including particle composition, size, and interfacial properties. The factors impacting the functional performance of colloidal delivery systems are then highlighted, including their loading capacity, encapsulation efficiency, protective properties, retention/release properties, and stability. Different kinds of colloidal delivery systems suitable for encapsulation of BPPs are then reviewed, such as microemulsions, emulsions, solid lipid particles, liposomes, and microgels. Finally, some examples of the use of colloidal delivery systems for delivery of specific BPPs are given, including hormones, enzymes, vaccines, antimicrobials, and ACE inhibitors. An emphasis is on the development of food-grade colloidal delivery systems, which could be used in functional or medical food applications. The knowledge presented should facilitate the design of more effective vehicles for the oral delivery of bioactive proteins and peptides.
Beneficial Regulation of Cellular Oxidative Stress Effects, and Expression of Inflammatory, Angiogenic, and the Extracellular Matrix Remodeling Proteins by 1α,25-Dihydroxyvitamin D3 in a Melanoma Cell Line
Authors: Philips Neena , Samuel Philips , Keller Thomas , Alharbi Asma , Alshalan Samar , Shamlan Sara-Ali
Published: March 2020

The causes of cancer include the cellular accumulation reactive oxygen species (ROS), which overrides the cellular antioxidants such as superoxide dismutase, from intrinsic aging, genetics, and exposure to environmental pollutants and ultraviolet (UV) radiation. The ROS damage biomolecules such as DNA (including p53 gene), RNA, and lipids, and activate inflammatory, angiogenic, and extracellular matrix (ECM) remodeling proteins; which collectively facilitate carcinogenesis. The 1α,25-dihydroxyvitamin D3 (Vitamin D) has anti-carcinogenic potential from its antioxidant, anti-inflammatory, and endocrine properties. We examined the anti-carcinogenic mechanism of vitamin D through the beneficial regulation of oxidative stress effects (oxidative DNA/RNA damage, superoxide dismutase expression, membrane damage, and p53 promoter activity), and expression (at the protein, mRNA and/or promoter levels) of inflammatory mediators (interleukin-1 (IL-1) and tumor necrosis factor-α (TNF-α)), angiogenic mediators (transforming growth factor-β (TGF-β), and vascular endothelial growth factor (VEGF)), and the ECM remodeling proteins (matrix metalloproteinases (MMP)-1 and MMP-2) by vitamin D in melanoma cells. Vitamin D inhibited oxidative DNA/RNA damage and membrane damage; and stimulated superoxide dismutase expression and p53 promoter activity in melanoma cells. It inhibited the expression of IL-1, TNF-α, TGF-β, VEGF, MMP-1 and MMP-2 by transcriptional or post-transcriptional mechanisms. We conclude that vitamin D is beneficial to melanoma cells through the inhibition of oxidative DNA/RNA damage, membrane damage, and the expression of inflammatory, angiogenic and ECM remodeling proteins; and the stimulation of superoxide dismutase expression and p53 promoter activity.
Effect of Heat Treatment on the Chemical Structure and Thermal Properties of Softwood-Derived Glycol Lignin
Authors: Nge Thi Thi , Tobimatsu Yuki , Yamamura Masaomi , Takahashi Shiho , Takata Eri , Umezawa Toshiaki , Yamada Tatsuhiko
Published: March 2020

A large-scale glycol lignin (GL) production process (50 kg wood meal per batch) based on acid-catalyzed polyethylene glycol (PEG) solvolysis of Japanese cedar (JC) was developed at the Forestry and Forest Products Research Institute (FFPRI), Tsukuba, Japan. JC wood meal with various particle size distributions (JC-S < JC-M < JC-L) (average meal size, JC-S (0.4 mm) < JC-M (0.8 mm) < JC-L (1.6 mm)) and liquid PEG with various molecular masses are used as starting materials to produce PEG-modified lignin derivatives, namely, GLs, with various physicochemical and thermal properties. Because GLs are considered a potential feedstock for industrial applications, the effect of heat treatment on GL properties is an important issue for GL-based material production. In this study, GLs obtained from PEG400 solvolysis of JC-S, JC-M, and JC-L were subjected to heating in a constant-temperature drying oven at temperatures ranging from 100 to 220 °C for 1 h. All heat-treated GL series were thermally stable, as determined from the Klason lignin content, TMA, and TGA analyses. SEC analysis suggests the possibility of condensation among lignin fragments during heat treatment. ATR-FTIR spectroscopy, thioacidolysis, and 2D HSQC NMR demonstrated that a structural rearrangement occurs in the heat-treated GL400 samples, in which the content of α–PEG-β–O-4 linkages decreases along with the proportional enrichments of β–5 and β–β linkages, particularly at treatment temperatures above 160 °C.
Natural Psychoplastogens As Antidepressant Agents
Authors: Benko Jakub , Vranková Stanislava
Published: March 2020

Increasing prevalence and burden of major depressive disorder presents an unavoidable problem for psychiatry. Existing antidepressants exert their effect only after several weeks of continuous treatment. In addition, their serious side effects and ineffectiveness in one-third of patients call for urgent action. Recent advances have given rise to the concept of psychoplastogens. These compounds are capable of fast structural and functional rearrangement of neural networks by targeting mechanisms previously implicated in the development of depression. Furthermore, evidence shows that they exert a potent acute and long-term positive effects, reaching beyond the treatment of psychiatric diseases. Several of them are naturally occurring compounds, such as psilocybin, N,N-dimethyltryptamine, and 7,8-dihydroxyflavone. Their pharmacology and effects in animal and human studies were discussed in this article.
Synthesis and Antiproliferative Screening Of Novel Analogs of Regioselectively Demethylated Colchicine and Thiocolchicine
Authors: Czerwonka Dominika , Sobczak Szymon , Maj Ewa , Wietrzyk Joanna , Katrusiak Andrzej , Huczyński Adam
Published: March 2020

Colchicine, a pseudoalkaloid isolated from Colchicum autumnale, has been identified as a potent anticancer agent because of its strong antimitotic activity. It was shown that colchicine modifications by regioselective demethylation affected its biological properties. For demethylated colchicine analogs, 10-demethylcolchicine (colchiceine, 1) and 1-demethylthiocolchicine (3), a series of 12 colchicine derivatives including 5 novel esters (2b–c and 4b–d) and 4 carbonates (2e–f and 4e–f) were synthesized. The antiproliferative activity assay, together with in silico evaluation of physicochemical properties, confirmed attractive biological profiles for all obtained compounds. The substitutions of H-donor and H-acceptor sites at C1 in thiocolchicine position provide an efficient control of the hydration affinity and solubility, as demonstrated for anhydrate 3, hemihydrate 4e and monohydrate 4a.
Simplification of Natural β-Carboline Alkaloids to Obtain Indole Derivatives as Potent Fungicides against Rice Sheath Blight
Authors: Zeng Jie , Zhang Zhijun , Zhu Qi , Jiang Zhiyan , Zhong Guohua
Published: March 2020

The increasing resistance of rice sheath blight caused by Rhizoctonia solani highlights the need for highly effective and environmentally benign agents. Natural β-carboline alkaloids were simplified to obtain a series of indole derivatives, and their fungicidal activity and preliminary mode of action against R. solani were also evaluated. The initial hit indole (7) displayed significant fungicidal activity with an EC50 value of 25.56 μg/mL, and was selected for further optimization. Importantly, compound 55, the most active compound, had an EC50 value of 0.62 μg/mL, and approximately 300-fold more potent than validamycin A (EC50 = 183.00 μg/mL). In vivo bioassay also demonstrated that compound 55 showed better fungicidal activities than validamycin A. Moreover, the mechanism studies revealed that compound 55 not only caused remarkable morphological and structural alterations of R. solani hyphae, but also induced the loss of mitochondrial membrane potential and interfered with DNA synthesis. Therefore, compound 55 showed superior fungicidal activity against R. solani, and the elucidated mode of action supported the potential application of compound 55 against rice sheath blight.
Antioxidant Properties of Camphene-Based Thiosemicarbazones: Experimental and Theoretical Evaluation
Authors: Yang Lijuan , Liu Haochuang , Xia Dasha , Wang Shifa
Published: March 2020

The thiosemicarbazone derivatives have a wide range of biological activities, such as antioxidant activity. In this study, the antiradical activities of six camphene-based thiosemicarbazones (TSC-1~6) were investigated by 2,2-diphenyl-1-picrylhydrazyl (DPPH) and peroxyl radical scavenging capacity (PSC) assays, respectively, and the results reveal that TSC1~6 exhibited good abilities for scavenging free radicals in a dose-dependent way. Compound TSC-2 exhibited the best effect of scavenging DPPH radical, with the lowest EC50 (0.208 ± 0.004 mol/mol DPPH) as well as the highest bimolecular rate constant Kb (4218 M−1 s−1), which is 1.18-fold higher than that of Trolox. Meanwhile, TSC-2 also obtained the lowest EC50 (1.27 µmol of Trolox equiv/µmol) of scavenging peroxyl radical. Furthermore, the density functional theory (DFT) calculation was carried out to further explain the experimental results by calculating several molecular descriptors associated with radical scavenging activity. These theoretical data suggested that the electron-donating effect of the diethylamino group in TSC-2 leads to the enhancement of the scavenging activities and the studied compounds may prefer to undergo the hydrogen atom transfer process.
Zinc Oxide Films with High Transparency and Crystallinity Prepared by a Low Temperature Spatial Atomic Layer Deposition Process
Authors: Zhao Ming-Jie , Sun Zhi-Tao , Hsu Chia-Hsun , Huang Pao-Hsun , Zhang Xiao-Ying , Wu Wan-Yu , Gao Peng , Qiu Yu , Lien Shui-Yang , Zhu Wen-Zhang
Published: March 2020

Zinc oxide (ZnO) attracts much attention owing to its remarkable electrical and optical properties for applications in optoelectronics. In this study, ZnO thin films were prepared by spatial atomic layer deposition with diethylzinc and water as precursors. The substrate temperature was varied from 55 to 135 °C to investigate the effects on the optical, electrical, and structural properties of the films. All ZnO samples exhibit an average transmittance in visible and near-infrared light range exceeding 80% and a resistivity in the range of (3.2–9.0) × 10−3 Ω·cm when deposited on a borosilicate glass with a refractive index of ≈1.52. The transmittance, band gap, refractive index, and extinction coefficient are rarely affected, while the resistivity only slightly decreases with increasing temperature. This technique provides a wide process window for depositing ZnO thin films. The results revealed that the films deposited at a substrate of 55 °C were highly crystalline with a preferential (1 0 0) orientation. In addition, the grains grow larger as the substrate temperature increases. The electrical properties and reliability of ZnO/PET samples are also studied in this paper.
Controllable Synthesis of Mn3O4 Nanowires and Application in the Treatment of Phenol at Room Temperature
Authors: Han Runlin , Chen Min , Liu Xiaobing , Zhang Yuhang , Xie Yongli , Sui Yan
Published: March 2020

Nanosized Mn3O4 nanowires are prepared with KMnO4 and ethanol in mild conditions by facile hydrothermal method. Hydrothermal reaction temperature is optimized to get uniform nanowires. The prepared Mn3O4 nanowires exhibit high activity in the treatment of phenol at acid condition and room temperature. The 20 mg Mn3O4 nanowires can efficiently dispose of 50 mL phenol solution (0.2 g·L−1) at pH 2 and 25 °C. The nanowires before and after phenol treatment are characterized by scanning electron microscopy (SEM), X-ray diffraction (XRD) and X-ray photoelectron spectroscopy (XPS) and the reaction mechanism is discussed.
Paper Functionalized with Nanostructured TiO2/AgBr: Photocatalytic Degradation of 2–Propanol under Solar Light Irradiation and Antibacterial Activity
Authors: Sboui Mouheb , Bouattour Soraa , Gruttadauria Michelangelo , Marcì Giuseppe , Liotta Leonarda Francesca , Boufi Sami
Published: March 2020

A facile method to produce paper–TiO2 decorated with AgBr nanoparticles by a mild hydrothermal process at 140 °C was reported. The synthesis method was based on the immersion of the paper in a ready-made suspension of TiO2/AgBr, comprising TiO2 sol solution prepared in acidic conditions and AgBr solution (10−4 M). A paper–TiO2 sample was prepared and used as reference. The formation of crystalline phases of titanium oxide (TiO2) and silver bromide (AgBr) was demonstrated by XRD, Raman and EDX analyses. The surface morphology of the TiO2–AgBr was investigated by Field Effect Scanning Electronic Microscopy (FE–SEM). The photocatalytic performances of the prepared material were evaluated in the degradation of 2-propanol in the gas phase, under simulated sunlight illumination. Its antibacterial properties against Escherichia coli (E. coli) were also assessed. The efficiency of photodegradation and the anti-bacterial properties of paper–TiO2–AgBr were attributed to an improvement in the absorption of visible light, the increased production of reactive oxygen species (ROS) and the low recombination of photogenerated charge carriers due to the synergistic effect between TiO2 and AgBr/Ag nanoparticles.
Vertically Aligned Single-Crystalline CoFe2O4 Nanobrush Architectures with High Magnetization and Tailored Magnetic Anisotropy
Authors: Fan Lisha , Gao Xiang , Farmer Thomas O. , Lee Dongkyu , Guo Er-Jia , Mu Sai , Wang Kai , Fitzsimmons Michael R. , Chisholm Matthew F. , Ward Thomas Z. , Eres Gyula , Lee Ho Nyung
Published: March 2020

Micrometer-tall vertically aligned single-crystalline CoFe2O4 nanobrush architectures with extraordinarily large aspect ratio have been achieved by the precise control of a kinetic and thermodynamic non-equilibrium pulsed laser epitaxy process. Direct observations by scanning transmission electron microscopy reveal that the nanobrush crystal is mostly defect-free by nature, and epitaxially connected to the substrate through a continuous 2D interface layer. In contrast, periodic dislocations and lattice defects such as anti-phase boundaries and twin boundaries are frequently observed in the 2D interface layer, suggesting that interface misfit strain relaxation under a non-equilibrium growth condition plays a critical role in the self-assembly of such artificial architectures. Magnetic property measurements have found that the nanobrushes exhibit a saturation magnetization value of 6.16 μB/f.u., which is much higher than the bulk value. The discovery not only enables insights into an effective route for fabricating unconventional high-quality nanostructures, but also demonstrates a novel magnetic architecture with potential applications in nanomagnetic devices.
The Design of ZnO Nanorod Arrays Coated with MnOx for High Electrochemical Stability of a Pseudocapacitor Electrode
Authors: Chen Hsiang-Chun , Lyu Yang-Ru , Fang Alex , Lee Gang-Juan , Karuppasamy Lakshmanan , Wu Jerry J. , Lin Chung-Kwei , Anandan Sambandam , Chen Chin-Yi
Published: March 2020

Tremendous efforts have been made on the development of unique electrochemical capacitors or pseudocapacitors due to the overgrowing electrical energy demand. Here, the authors report a new and simple strategy for fabricating hybrid MnOx-coated ZnO nanorod arrays. First, the vertically aligned ZnO nanorods were prepared by chemical bath deposition (CBD) as a template providing a large surface area for active material deposition. The manganese oxide was subsequently coated onto the surface of the ZnO nanorods to form a hybrid MnOx-coated ZnO nanostructure by anodic deposition in a manganese acetate (MnA)-containing aqueous solution. The hybrid structure of MnOx-coated ZnO nanorod arrays exhibits a large surface area and high conductivity, essential for enhancing the faradaic processes across the interface and improving redox reactions at active MnOx sites. A certain concentration of the deposition solution was selected for the MnOx coating, which was studied as a function of deposition time. Cyclic voltammetry (CV) curves showed that the specific capacitance (SC) of the MnOx-coated ZnO nanostructure was 222 F/g for the deposition times at 10 s when the concentration of MnA solution was 0.25 M. The unique hybrid nanostructures also exhibit excellent cycling stability with >97.5% capacitance retention after 1200 CV cycles. The proposed simple and cost-effective method of fabricating hybrid nanostructures may pave the way for mass production of future intelligent and efficient electrochemical energy storage devices.