bluuebunny/crossref_metadata_2025 huggingface dataset:
Macroalgae Specialized Metabolites: Evidence for Their Anti-Inflammatory Health Benefits
Authors: Rocha Djenisa H. A. , Pinto Diana C. G. A. , Silva Artur M. S.
Published: December 2022

Inflammation is an organism’s response to chemical or physical injury. It is split into acute and chronic inflammation and is the last, most significant cause of death worldwide. Nowadays, according to the World Health Organization (WHO), the greatest threat to human health is chronic disease. Worldwide, three out of five people die from chronic inflammatory diseases such as stroke, chronic respiratory diseases, heart disorders, and cancer. Nowadays, anti-inflammatory drugs (steroidal and non-steroidal, enzyme inhibitors that are essential in the inflammatory process, and receptor antagonists, among others) have been considered as promising treatments to be explored. However, there remains a significant proportion of patients who show poor or incomplete responses to these treatments or experience associated severe side effects. Seaweeds represent a valuable resource of bioactive compounds associated with anti-inflammatory effects and offer great potential for the development of new anti-inflammatory drugs. This review presents an overview of specialized metabolites isolated from seaweeds with in situ and in vivo anti-inflammatory properties. Phlorotannins, carotenoids, sterols, alkaloids, and polyunsaturated fatty acids present significant anti-inflammatory effects given that some of them are involved directly or indirectly in several inflammatory pathways. The majority of the isolated compounds inhibit the pro-inflammatory mediators/cytokines. Studies have suggested an excellent selectivity of chromene nucleus towards inducible pro-inflammatory COX-2 than its constitutive isoform COX-1. Additional research is needed to understand the mechanisms of action of seaweed’s compounds in inflammation, given the production of sustainable and healthier anti-inflammatory agents.
T-Peak to T-End Interval for Prediction of Positive Response to Ajmaline Challenge Test in Suspected Brugada Syndrome Patients
Authors: Thapanasuta Mananchaya , Chokesuwattanaskul Ronpichai , Leelapatana Pattranee , Rungpradubvong Voravut , Prechawat Somchai
Published: December 2022

Background: Brugada syndrome (BrS) is diagnosed in patients with ST-segment elevation with coved-type morphology in the right precordial leads, occurring spontaneously or after provocative drugs. Due to electrocardiographic (ECG) inconsistency, provocative drugs, such as sodium-channel blockers, are useful for unmasking BrS. Ajmaline is superior to flecainide and procainamide to provoke BrS. Prolonged T-peak to T-end (TpTe) is associated with an increased risk of ventricular arrhythmia and sudden cardiac death in Brugada syndrome patients. Objective: This study aimed to investigate the predictive value of T-peak to T-end interval and corrected T-peak to T-end interval for predicting the positive response of the ajmaline challenge test in suspected Brugada syndrome patients. Methods: Patients who underwent the ajmaline test in our center were enrolled. Clinical characteristics and electrocardiographic parameters were analyzed, including TpTe, corrected TpTe, QT, corrected QT(QTc) interval, and S-wave duration, compared with the result of the ajmaline challenge test. Results: The study found that TpTe and corrected TpTe interval in suspected BrS patients were not significantly associated with a positive response to the ajmaline challenge test. Conclusions: The T-peak to T-end interval and corrected T-peak to T-end interval could not predict the positive response of the ajmaline challenge test in suspected Brugada syndrome patients.
A Green Stable Antifouling PEGylated PVDF Membrane Prepared by Vapor-Induced Phase Separation
Authors: Aini Hana Nur , Maggay Irish , Chang Yung , Venault Antoine
Published: December 2022

While green solvents are being implemented in the fabrication of polyvinylidene fluoride (PVDF) membranes, most are not compatible with the vapor-induced phase separation (VIPS) process for which relatively low dissolution temperatures are required. Additionally, preparing antifouling green membranes in one step by blending the polymer with an antifouling material before inducing phase separation remains extremely challenging due to the solubility issues. Here, the green solvent triethyl phosphate (TEP) was used to solubilize both PVDF and a copolymer (synthesized from styrene monomer and poly(ethylene glycol) methyl ether methacrylate). VIPS was then used, yielding symmetric bi-continuous microfiltration membranes. For a 2 wt% copolymer content in the casting solution, the corresponding membrane P2 showed a homogeneous and dense surface distribution of the copolymer, resulting in a high hydration capacity (>900 mg/cm3) and effective resistance to biofouling during the adsorption tests using bovine serum albumin, Escherichia coli or whole blood, with a measured fouling reduction of 80%, 89% and 90%, respectively. Cyclic filtration tests using bacteria highlighted the competitive antifouling properties of the membranes with a flux recovery ratio after two water/bacterial solution cycles higher than 70%, a reversible flux decline ratio of about 62% and an irreversible flux decline ratio of 28%. Finally, these green antifouling membranes were shown to be stable despite several weeks of immersion in water.
Design Parameters of a Direct Contact Membrane Distillation and a Case Study of Its Applicability to Low-Grade Waste Energy
Authors: Tewodros Bitaw Nigatu , Yang Dae Ryook , Park Kiho
Published: December 2022

In the design of membrane distillation systems, the effect of different heat transfer coefficient models on the transmembrane flux seems to have been overlooked thus far. Interestingly, the range of discrepancy in the results of the transmembrane flux is wide, especially in the laminar flow region, where MD is often operated. This can be inferred by studying the design and parameters of the direct contact membrane distillation system. In this study, the physical and physiochemical properties that affect the design of MD are comprehensively reviewed, and based on the reviewed parameters, an MD design algorithm is developed. In addition, a cost analysis of the designed MD process for low-grade-energy fluids is conducted. As a result, a total unit product cost of USD 1.59/m3, 2.69/m3, and 15.36/m3 are obtained for the feed velocities of 0.25, 1 and 2.5 m/s, respectively. Among the design parameters, the membrane thickness and velocity are found to be the most influential.
MOF-Based Sorbents Used for the Removal of Hg2+ from Aqueous Solutions via a Sorption-Assisted Microfiltration
Authors: Miśkiewicz Agnieszka , Starosta Wojciech , Walczak Rafał , Zakrzewska-Kołtuniewicz Grażyna
Published: December 2022

Mercury is considered to be one of the most important chemicals of public health concern. Therefore, it is necessary to develop an effective method of removing mercury ions from aqueous solutions to protect people from exposure to this element. This paper presents research on the application of a sorption-assisted microfiltration (SAMF) hybrid process for the removal of Hg2+ from aqueous solutions. As adsorbents used in the process, the metal-organic-framework-UiO-66-type materials have been considered. The methods of synthesis of two types of metal-organic-framework (MOF) sorbents were developed: UiO-66_MAA modified with mercaptoacetic acid (MAA) and a composite of UiO-66 with cellulose. The results of the experiments performed proved that the separation of Hg2+ from water solutions conducted in such a system was effective; however, a relatively long initial contact time of reagents before filtration was required. The experimental results can be used to optimize the parameters of the SAMF process in order to obtain an effective method of Hg2+ removal from aqueous solutions.
Treatment of Boiler Condensate by Ultrafiltration for Reuse
Authors: Cano Grégory , Moulin Philippe
Published: December 2022

The generation of water vapor is crucial for the petrochemical industry. In order to protect the boiler from damage, the re-injected water must not contain any suspended matter, especially hydrocarbons. Moreover, it is condensed steam with a temperature close to 100 °C and the unintentional creation or chronic generation of pollution, respectively, that can more or less produce the concentrated pollution. In this context, membrane processes appear promising in order to achieve this reuse and more especially crossflow ceramic membranes. The novelty of this paper is to study the retention of hydrocarbons and suspended solids contained in the condensate hot water of a high-capacity boiler using ceramic ultrafiltration membranes. In total, two ultrafiltration molecular weight cut-offs were used: 50–150 kDa. Several operating parameters were studied such as effluent type (accidental or chronic pollution), temperature, transmembrane pressure, initial volume, and pilot plant size. In all cases, retention of suspended matter was above 90% and residual hydrocarbon concentrations were under 0.1 ppm even for high-volume concentrations. Control of the transmembrane pressure and the molecular weight cut-off of the membrane are key to optimizing the process. Despite the high-volume concentration obtained, the membranes were perfectly regenerated with conventional cleaning procedures.
Simplified Damage Assessment Tool for Rails and Crossings Based on Standard Wear and RCF Models
Authors: Schnalzger Georg , Daves Werner , Maierhofer Jürgen , Ossberger Uwe , Ossberger Heinz , Bucher Christian , Pletz Martin
Published: December 2022

A numerical tool is proposed to simultaneously assess various damage mechanisms that are driven by contact loading. The tool transfers loads to the contact-patch level using three contact parameters: the maximum contact pressure (pmax), the creepage (c) and the contact length (2a). The local wear and RCF predictions are implemented based on existing models from the literature. The load input can originate from numerical vehicle–track simulations or manual input of the user. The assessment tool is applied for a finite element analysis of a fixed manganese crossing nose to prove its validity. The algorithm is implemented via an automated Python code, which, on the one hand enables damage prediction for track components based on standard damage models. On the other hand, knowledge of novel local contact damage models can be transferred to the scale of track components.
Influence of the Gas Reaction Atmosphere on the Structure, Phase Composition, Functional Properties and Cytocompatibility of Porous Titanium–Nickel Alloys
Authors: Marchenko Ekaterina , Baigonakova Gulsharat , Shishelova Arina
Published: December 2022

This work studies the effect that argon and nitrogen atmospheres have on the structure, phase composition, cytocompatibility, and functional properties of porous NiTi alloys obtained by self-propagating high-temperature synthesis. Porous alloys obtained in the nitrogen atmosphere (NiTi-(N)) are characterized by brittle interstitial phases Ti4Ni2O(N) and the appearance of a finely dispersed TiNi3 phase in comparison with the alloy obtained in an argon atmosphere (NiTi-(Ar)). An increase in the volume fraction of the Ti4Ni2O(N) phase as well as an increase in the content of nitrogen in the surface layer of the NiTi-(N) alloy favorably affects the surface cytocompatibility with bone marrow mesenchymal stem cells. It was found that the mechanisms of martensitic transformations in porous NiTi alloys under load and without load are different. It has been established that the mechanical characteristics of NiTi-(N) alloys are noticeably lower than those of NiTi-(Ar) alloys. Thus, according to the data obtained, porous NiTi-(N) alloys can be considered more biocompatible under low physiological load. However, it is necessary to increase their reversible deformation and tensile strength in order to use porous NiTi-(N) alloys under high physiological load.
Development of Hot Working Process Maps for Incompressible TRIP Steel and Zirconia Composites Using Crystal Plasticity-Based Numerical Simulations
Authors: Ali Muhammad , Qayyum Faisal , Tseng ShaoChen , Guk Sergey , Overhagen Christian , Chao ChingKong , Prahl Ulrich
Published: December 2022

In this study, we developed hot working process maps for incompressible TRIP steel composites with 0%, 5%, 10%, and 20% zirconia particles using crystal plasticity-based numerical simulations. Experimentally recorded material flow curves were used to calibrate material model parameters for TRIP steel and zirconia. The fitted material models were used for running the composite simulations. Representative volume elements (RVEs) for composites were generated using the open-source DREAM.3D program. After post-processing, the simulation results were used to calculate global and local stress–strain values at temperatures ranging from 700 to 1200 °C and strain rates ranging from 0.001 to 100 s−1. Local stress–strain maps allow researchers to investigate the effect of zirconia particles on composites, which is difficult to measure experimentally at these high temperatures. On the dynamic material model (DMM), the global results were then used to construct process maps. Because the ability of the simulation model to depict dynamic softening was constrained, the processing maps derived from the simulation data did not depict regions of instability. By running crystal plasticity-based numerical simulations, we reported important findings that might help in building hot working process maps for dual-phase materials.
Mutual Interactions of Lamb Waves in Nonlinear Elastic Plates
Authors: Ma Shuyi , Zhang Guixian , Hou Hongfeng , Wang Lidong
Published: December 2022

The mutual interactions of Lamb waves in nonlinear elastic plates are studied in this article. Many researchers have investigated the interactions of Lamb wave modes at nonlinear higher harmonics. However, little is known about nonlinearity-driven Lamb modulations from two primary modes with different frequencies. In this study, the existence of symmetric or antisymmetric mode due to Lamb wave mutual interactions is firstly theoretically formulated. Then, an approach is proposed to evaluate the intensity of phase velocity matching for selecting primary modes. Finally, the characteristics of the modulated wave generation are investigated and demonstrated. The generation of modulated waves in an aluminum plate and fatigue crack can be detected by mutual interactions of Lamb waves. The main contribution of this work is the proposed mutual interaction theory of Lamb waves in fatigue plates, which can guide fatigue detection in the metal plate.
Corrosion Evaluation of Austenitic and Duplex Stainless Steels in Molten Carbonate Salts at 600 °C for Thermal Energy Storage
Authors: Morales Miguel , Cabezas Laura , Castro-Alloca Manuel , Fargas Gemma , Llanes Luis , Mateo Antonio
Published: December 2022

Next-generation concentrated solar power (CSP) plants are required to operate at temperatures as high as possible to reach a better energy efficiency. This means significant challenges for the construction materials in terms of corrosion resistance, among others. In the present work, the corrosion behavior in a molten eutectic ternary Li2CO3-Na2CO3-K2CO3 mixture at 600 °C was studied for three stainless steels: an austenitic grade AISI 301LN (SS301) and two duplex grades, namely 2205 (DS2205) and 2507 (DS2507). Corrosion tests combined with complementary microscopy, microanalysis and mechanical characterization techniques were employed to determine the corrosion kinetics of the steels and the oxide scales formed on the surface. The results showed that all three materials exhibited a corrosion kinetics close to a parabolic law, and their corrosion rates increased in the following order: DS2507 < SS301 < DS2205. The analyses of the oxide scales evidenced an arranged multilayer system with LiFeO2, LiCrO2, FeCr2O4 and NiO as the main compounds. While the Ni-rich inner layer of the scales presented a good adhesion to the metallic substrate, the outer layer formed by LiFeO2 exhibited a higher concentration of porosity and voids. Both the Cr and Ni contents at the inner layer and the defects at the outer layer were crucial for the corrosion resistance for each steel. Among the studied materials, super duplex stainless steel 2507 is found to be the most promising alternative for thermal energy storage of those structural components for CSP plants.
Quantitative Serum NMR Spectroscopy Stratifies COVID-19 Patients and Sheds Light on Interfaces of Host Metabolism and the Immune Response with Cytokines and Clinical Parameters
Authors: Rössler Titus , Berezhnoy Georgy , Singh Yogesh , Cannet Claire , Reinsperger Tony , Schäfer Hartmut , Spraul Manfred , Kneilling Manfred , Merle Uta , Trautwein Christoph
Published: December 2022

The complex manifestations of COVID-19 are still not fully decoded on the molecular level. We combined quantitative the nuclear magnetic resonance (NMR) spectroscopy serum analysis of metabolites, lipoproteins and inflammation markers with clinical parameters and a targeted cytokine panel to characterize COVID-19 in a large (534 patient samples, 305 controls) outpatient cohort of recently tested PCR-positive patients. The COVID-19 cohort consisted of patients who were predominantly in the initial phase of the disease and mostly exhibited a milder disease course. Concerning the metabolic profiles of SARS-CoV-2-infected patients, we identified markers of oxidative stress and a severe dysregulation of energy metabolism. NMR markers, such as phenylalanine, inflammatory glycoproteins (Glyc) and their ratio with the previously reported supramolecular phospholipid composite (Glyc/SPC), showed a predictive power comparable to laboratory parameters such as C-reactive protein (CRP) or ferritin. We demonstrated interfaces between the metabolism and the immune system, e.g., we could trace an interleukin (IL-6)-induced transformation of a high-density lipoprotein (HDL) to a pro-inflammatory actor. Finally, we showed that metadata such as age, sex and constitution (e.g., body mass index, BMI) need to be considered when exploring new biomarkers and that adding NMR parameters to existing diagnoses expands the diagnostic toolbox for patient stratification and personalized medicine.
Bio-Guided Isolation of New Compounds from Baccharis spp. as Antifungal against Botrytis cinerea
Authors: Pinto Ana A. , Ruano-González Antonio , Ezzanad Abdellah , Pinedo-Rivilla Cristina , Sánchez-Maestre Rosario , Amaro-Luis Juan Manuel
Published: December 2022

Baccharis genus Asteraceae is widely used in traditional treatment against fever, headache, hepatobiliary disorders, skin ulcers, diabetes, and rheumatism, as well as an antispasmodic and diuretic. Its phytochemistry mainly shows the presence of flavonoids and terpenoids such as monoterpenes, sesquiterpenes, diterpenes, and triterpenes. Some of them have been evaluated for biological activities presenting allelopathic, antimicrobial, cytotoxic, and anti-inflammatory properties. In this paper, our research group reported the isolation, characterization, and antifungal evaluation of several molecules isolated from the dichloromethane extract from Baccharis prunifolia, Baccharis trinervis, and Baccharis zumbadorensis against the phytopathogen fungus Botrytis cinerea. The isolated compounds have not previously been tested against Botrytis, revealing an important source of antifungals in the genus Baccharis. Six known flavones were isolated from B. prunifolia. The dichloromethane extracts of B. trinervis and B. zumbadorensis were subjected to a bio-guided isolation, obtaining three known flavones, an α-hydroxidihydrochalcone mixture, one labdane, one triterpene, and two norbisabolenes from the most active fractions. The compounds 4′-methoxy-α-hydroxydihydrochalcone (7A), 3β,15-dihydroxylabdan-7-en-17-al (8), and 13-nor-11,12-dihydroxybisabol-2-enone (11) are novel. The most active compounds were the Salvigenin (5) and 1,2-dihydrosenedigital-2-one (10) with an IC50 of 13.5 and 3.1 μg/mL, respectively.
A Rapid and Simple Method for Purification of Nucleic Acids on Porous Membranes: Simulation vs. Experiment
Authors: Fonseca-Benitez Angela , Romero-Sánchez Consuelo , Lara Sandra Janneth Perdomo
Published: December 2022

Paper-based microfluidic systems have emerged as one of the most promising technologies for developing point-of-care diagnostic platforms (POCT) for detecting and monitoring various diseases. Saliva is a non-invasive biofluid easily collected, transported, and stored. Due to its accessibility and connection to systemic diseases, saliva is one of the best candidates for medical advancement at the point of care, where people can easily monitor their health. However, saliva is a complex mixture of DNA, RNA, proteins, exosomes, and electrolytes. Thus, nucleic acid separation from the salivary components is essential for PCR applications. Paper membranes are a highly porous and foldable structure capable of transporting fluids without pumps and sophisticated systems. The current work presents an insight into simulations for nucleic acid extraction on three types of porous paper membranes for use in point-of-care devices. The flow fluid model is solved on a COMSOL Multiphysics 5.3 free version platform, and the results are compared with experimental assays. The results show that pore uniformity, wet strength, porosity, and functional groups of MF1™ and Fusion 5™ paper membranes are vital parameters affecting nucleic acid extraction and PCR amplification efficiency.
Environmental, Economic, and Social Aspects of Human Urine Valorization through Microbial Fuel Cells from the Circular Economy Perspective
Authors: Martínez-Castrejón Mariana , López-Díaz Jazmin A. , Solorza-Feria Omar , Talavera-Mendoza Oscar , Rodríguez-Herrera América L. , Alcaraz-Morales Osbelia , Hernández-Flores Giovanni
Published: December 2022

Population growth increases the challenge of meeting basic human needs, such as water, a limited resource. Consumption habits and water pollution have compromised natural resources to unsustainable levels. Sustainable effluent treatment practices, such as decentralized systems focused on energy, nutrients, and water recovery, have attracted the attention of the scientific community. Human urine (HU) is a physiological liquid waste whose main component is water (~95%). HU has a significant amount of nutrients, such as N, P, K, and organic matter, which are usually lacking in fecal coliforms. Therefore, the possibility exists of recovering nutrients and energy from HU using sustainable and non-sustainable technologies. Treating HU in bioelectrochemical systems (BES) is a novel alternative to obtaining byproducts from this effluent more sustainably than in electrochemical systems. Microbial fuel cells (MFCs) are an interesting example, contributing to HU revalorization from unwanted waste into a valuable resource of nutrients, energy, and water. Even when urine-operated MFCs have not generated attractive potential outputs or produced considerable amounts of bioelectricity, this review emphasizes HU advantages as nutrients or water sources. The aim of this review was to analyze the current development of BES for HU treatment based on the water circular economy, discussing challenges and perspectives researchers might encounter.
A Piezoelectrically Excited ZnO Nanowire Mass Sensor with Closed-Loop Detection at Room Temperature
Authors: Cai Xianfa , Xu Lizhong
Published: December 2022

One-dimensional nanobeam mass sensors offer an unprecedented ability to measure tiny masses or even the mass of individual molecules or atoms, enabling many interesting applications in the fields of mass spectrometry and atomic physics. However, current nano-beam mass sensors suffer from poor real-time test performance and high environment requirements. This paper proposes a piezoelectrically excited ZnO nanowire (NW) mass sensor with closed-loop detection at room temperature to break this limitation. It is detected that the designed piezo-excited ZnO NW could operate at room temperature with a resonant frequency of 417.35 MHz, a quality factor of 3010, a mass sensitivity of −8.1 Hz/zg, and a resolution of 192 zg. The multi-field coupling dynamic model of ZnO NW mass sensor under piezoelectric excitation was established and solved. The nonlinear amplitude-frequency characteristic formula, frequency formula, modal function, sensitivity curve, and linear operating interval were obtained. The ZnO NW mass sensor was fabricated by a top-down method and its response to ethanol gas molecules was tested at room temperature. Experiments show that the sensor has high sensitivity, good closed-loop tracking performance, and high linearity, which provides great potential for the detection of biochemical reaction process of biological particles based on mechanics.
Combined Distributed Shared-Buffered and Diagonally-Linked Mesh Topology for High-Performance Interconnect
Authors: Effiong Charles , Sassatelli Gilles , Gamatié Abdoulaye
Published: December 2022

Networks-on-Chip (NoCs) have become the de-facto on-chip interconnect for multi/manycore systems. A typical NoC router is made up of buffers used to store packets that are unable to advance to their desired destination. However, buffers consume significant power/area and are often underutilized, especially in cases of applications with non-uniform traffic patterns thus leading to performance degradation for such applications. To improve network performance, the Roundabout NoC (R-NoC) concept is considered. R-NoC is inspired by real-life multi-lane traffic roundabouts and consists of lanes that are shared by multiple input/output ports to maximize buffering resource utilization. R-NoC relies on router-internal adaptive routing that decides the lane path based on back pressure. Back pressure makes it possible to assess lane utilization and route packets accordingly. This is made possible thanks to the use of elastic buffers for control flow, a clever type of handshaking in a way similar to asynchronous circuits. Another prominent feature of R-NoC is that internal routing and arbitration are completely distributed which allows for significant freedom in deciding internal router topology and parameters. This work leverages this property and proposes novel yet unexplored configurations for which an in-depth evaluation of corresponding implementations on 45 nm CMOS technology is given. Each configuration is evaluated performance and power-wise on both synthetic and real application traffic. Several R-NoC configurations are identified and demonstrated to provide very significant performance improvements over standard mesh configurations and a typical input-buffered router, without compromising area and power consumption. Exploiting the distributed nature of R-NoC routers, a diagonally-linked configuration is then proposed which incurs moderate area overhead and features yet better performance and energy efficiency.
Enhancing Performance of a MEMS-Based Piezoresistive Pressure Sensor by Groove: Investigation of Groove Design Using Finite Element Method
Authors: Thawornsathit Phongsakorn , Juntasaro Ekachai , Rattanasonti Hwanjit , Pengpad Putapon , Saejok Karoon , Leepattarapongpan Chana , Chaowicharat Ekalak , Jeamsaksiri Wutthinan
Published: December 2022

The optimal groove design of a MEMS piezoresistive pressure sensor for ultra-low pressure measurement is proposed in this work. Two designs of the local groove and one design of the annular groove are investigated. The sensitivity and linearity of the sensor are investigated due to the variations of two dimensionless geometric parameters of these grooves. The finite element method is used to determine the stress and deflection of the diaphragm in order to find the sensor performances. The sensor performances can be enhanced by creating the annular or local groove on the diaphragm with the optimal dimensionless groove depth and length. In contrast, the performances are diminished when the local groove is created on the beam at the piezoresistor. The sensitivity can be increased by increasing the dimensionless groove length and depth. However, to maintain low nonlinearity error, the annular and local grooves should be created on the top of the diaphragm. With the optimal designs of annular and local grooves, the net volume of the annular groove is four times greater than that of the local groove. Finally, the functional forms of the stress and deflection of the diaphragm are constructed for both annular and local groove cases.
Cefsulodin and Vancomycin: A Supplement for Chromogenic Coliform Agar for Detection of Escherichia coli and Coliform Bacteria from Different Water Sources
Authors: Schalli Michael , Inwinkl Sarah Maria , Platzer Sabine , Baumert Rita , Reinthaler Franz F. , Ofner-Kopeinig Petra , Haas Doris
Published: December 2022

Background microorganism growth on Chromogenic Coliform Agar (CCA) can be challenging. For this reason, a new alternative method with a Cefsulodin/Vancomycin (CV)-supplemented CCA should be developed in this study. CCA supplemented with CV was validated according to ÖNORM EN ISO 16140-4:2021 using water from natural sources in Styria, Austria. Results show that the alternative method using the supplemented CCA has similar values in relation to sensitivity (82.2%), specificity (98.6%) and higher selectivity (59%) compared to the reference method. Repeatability and reproducibility were acceptable for the alternative method and showed similar results with the reference method. The alternative method shows a very low false positive rate and a low false negative rate paired with good performance regarding the inclusion study. The exclusion study shows the advantage of our method by suppressing background microorganisms and facilitating the process of enumeration of Escherichia coli and other coliform bacteria on CCA plates. Aeromonas hydrophila and Pseudomonas aeruginosa growth was inhibited using the supplement. To conclude, the coliform CV selective supplement combined with CCA is an appropriate tool for coliform bacteria detection in water samples.
Attenuation of Pseudomonas aeruginosa Virulence by Pomegranate Peel Extract
Authors: Peppoloni Samuele , Colombari Bruna , Tagliazucchi Davide , Odorici Alessandra , Ventrucci Cristiano , Meto Aida , Blasi Elisabetta
Published: December 2022

Pseudomonas aeruginosa is an opportunistic pathogen often responsible for biofilm-associated infections. The high adhesion of bacterial cells onto biotic/abiotic surfaces is followed by production of an extracellular polysaccharidic matrix and formation of a sessile community (the biofilm) by the release of specific quorum-sensing molecules, named autoinducers (AI). When the concentrations of AI reach a threshold level, they induce the expression of many virulence genes, including those involved in biofilm formation, motility, pyoverdine and pyocyanin release. P. aeruginosa embedded into biofilm becomes resistant to both conventional drugs and the host’s immune response. Accordingly, biofilm-associated infections are a major clinical problem underlining the need for new antimicrobial therapies. In this study, we evaluated the effects of pomegranate peel extract (PomeGr) in vitro on P. aeruginosa growth and biofilm formation; moreover, the release of four AI was assessed. The phenolic profile of PomeGr, exposed or not to bacteria, was determined by high-performance liquid chromatography coupled to electrospray ionization mass spectrometry (HPLC-ESI-MS) analysis. We found that bacterial growth, biofilm production and AI release were impaired upon PomeGr treatment. In addition, the PomeGr phenolic content was also markedly hampered following incubation with bacterial cells. In particular, punicalagin, punicalin, pedunculagin, granatin, di-(HHDP-galloyl-hexoside) pentoside and their isomers were highly consumed. Overall, these results provide novel insights on the ability of PomeGr to attenuate P. aeruginosa virulence; moreover, the AI impairment and the observed consumption of specific phenolic compounds may offer new tools in designing innovative therapeutic approaches against bacterial infections.
Living and Regenerative Material Encapsulating Self-Assembled Shewanella oneidensis-CdS Hybrids for Photocatalytic Biodegradation of Organic Dyes
Authors: Tao Mingyue , Jin Chenyang , Lu Hongfei , Jin Kai , Yu Lin , Liu Jinliang , Zhang Jing , Zhu Xiaohui , Wu Yihan
Published: December 2022

Reductive biodegradation by microorganisms has been widely explored for detoxifying recalcitrant contaminants; however, the biodegradation capacity of microbes is limited by the energy level of the released electrons. Here, we developed a method to self-assemble Shewanella oneidensis-CdS nanoparticle hybrids with significantly improved reductive biodegradation capacity and constructed a living material by encapsulating the hybrids in hydrogels. The material confines the nano-bacteria hybrids and protects them from environmental stress, thus improving their recyclability and long-term stability (degradation capacity unhindered after 4 weeks). The developed living materials exhibited efficient photocatalytic biodegradation of various organic dyes including azo and nitroso dyes. This study highlights the feasibility and benefits of constructing self-assembled nano-bacteria hybrids for bioremediation and sets the stage for the development of novel living materials from nano-bacteria hybrids.
Genome-Based Analysis of Virulence Factors and Biofilm Formation in Novel P. aeruginosa Strains Isolated from Household Appliances
Authors: Kiel Annika , Creutz Ines , Rückert Christian , Kaltschmidt Bernhard Peter , Hütten Andreas , Niehaus Karsten , Busche Tobias , Kaltschmidt Barbara , Kaltschmidt Christian
Published: December 2022

In household washing machines, opportunistic pathogens such as Pseudomonas aeruginosa are present, which represent the household as a possible reservoir for clinical pathogens. Here, four novel P. aeruginosa strains, isolated from different sites of household appliances, were investigated regarding their biofilm formation. Only two isolates showed strong surface-adhered biofilm formation. In consequence of these phenotypic differences, we performed whole genome sequencing using Oxford Nanopore Technology together with Illumina MiSeq. Whole genome data were screened for the prevalence of 285 virulence- and biofilm-associated genes as well as for prophages. Linking biofilm phenotypes and parallelly appearing gene compositions, we assume a relevancy of the las quorum sensing system and the phage-encoded bacteriophage control infection gene bci, which was found on integrated phi297 DNA in all biofilm-forming isolates. Additionally, only the isolates revealing strong biofilm formation harbored the ϕCTX-like prophage Dobby, implicating a role of this prophage on biofilm formation. Investigations on clinically relevant pathogens within household appliances emphasize their adaptability to harsh environments, with high concentrations of detergents, providing greater insights into pathogenicity and underlying mechanisms. This in turn opens the possibility to map and characterize potentially relevant strains even before they appear as pathogens in society.
Allelic Variants of P66 Gene in Borrelia bavariensis Isolates from Patients with Ixodid Tick-Borne Borreliosis
Authors: Golidonova Kristina , Korenberg Eduard , Krupinskaya Ekaterina , Matrosova Vera , Gintsburg Alexander
Published: December 2022

Protein P66 is one of the crucial virulence factors of Borrelia, inducing the production of specific antibodies in patients with ixodid tick-borne borreliosis (ITBB). Various species of Borrelia are characterized by genetic variability of the surface-exposed loop of P66. However, little is known about this variability in Borrelia bavariensis. Here we describe the variability of the nucleotide sequences of P66 gene locus in isolates of B. bavariensis. Analysis of nucleotide sequences of P66 in 27 isolates of B. bavariensis from ITBB patients revealed three allelic variants of this gene. The alignment score of amino acid sequences in the isolates showed amino acid replacements in various positions confirming the presence of three allelic variants. Two of them are characteristic only for some isolates of B. bavariensis of the Eurasian gene pool from various parts of the geographic ranges of B. bavariensis from various samples. At least three allelic variants of P66 B. bavariensis have been identified, which have different amino acid expression, occur with different frequency in ITBB patients and, presumably, can have different effects on the course of the infection.
Exploring Diversity and Polymer Degrading Potential of Epiphytic Bacteria Isolated from Marine Macroalgae
Authors: Kumar Pravin , Verma Ashish , Sundharam Shiva S. , Ojha Anup Kumar , Krishnamurthi Srinivasan
Published: December 2022

The macroalgae surface allows specific bacterial communities to colonize, resulting in complex biological interactions. In recent years, several researchers have studied the diversity and function of the epiphytic bacteria associated with algal host, but largely these interactions remain underexplored. In the present study we analysed the cultivable diversity and polymer degradation potential of epiphytic bacteria associated with five different marine macroalgae (Sargassum, Ulva, Padina, Dictyota and Pterocladia sp.) sampled from the central west coast of India. Out of the total 360 strains isolated, purified and preserved, about 238 strains were identified through 16S rRNA gene sequence analysis and processed for polymer (cellulose, pectin, xylan and starch) degrading activities. Phylogeny placed the strains within the classes Actinobacteria, Bacilli, Alpha-proteobacteria, and Gamma-proteobacteria and clustered them into 45 genera, wherein Vibrio, Bacillus, Pseudoalteromonas, Alteromonas, Staphylococcus and Kocuria spp. were the most abundant with 20 strains identified as potentially novel taxa within the genera Bacillus, Cellulosimicrobium, Gordonia, Marinomonas, Vibrio, Luteimonas and Pseudoalteromonas. In terms of polymer hydrolysis potential, 61.3% had xylanase activity, while 59.7%, 58.8%, and 52.2% had amylase, cellulase, and pectinase activity, respectively. Overall, 75.6% of the strains degraded more than one polysaccharide, 24% degraded all polymers, while nine strains (3.8%) degraded raw sugarcane bagasse. This study showed great potential for seaweed-associated bacteria in the bio-remediation of agro-waste based raw materials, which can be employed in the form of green technology.
Enzymatic Characterization of Unused Biomass Degradation Using the Clostridium cellulovorans Cellulosome
Authors: Eljonaid Mohamed Yahia , Tomita Hisao , Okazaki Fumiyoshi , Tamaru Yutaka
Published: December 2022

The cellulolytic system of Clostridium cellulovorans mainly consisting of a cellulosome that synergistically collaborates with non-complexed enzymes was investigated using cellulosic biomass. The cellulosomes were isolated from the culture supernatants with shredded paper, rice straw and sugarcane bagasse using crystalline cellulose. Enzyme solutions, including the cellulosome fractions, were analyzed by SDS-PAGE and Western blot using an anti-CbpA antibody. As a result, C. cellulovorans was able to completely degrade shredded paper for 9 days and to be continuously cultivated by the addition of new culture medium containing shredded paper, indicating, through TLC analysis, that its degradative products were glucose and cellobiose. Regarding the rice straw and sugarcane bagasse, while the degradative activity of rice straw was most active using the cellulosome in the culture supernatant of rice straw medium, that of sugarcane bagasse was most active using the cellulosome from the supernatant of cellobiose medium. Based on these results, no alcohols were found when C. acetobutylicum was cultivated in the absence of C. cellulovorans as it cannot degrade the cellulose. While 1.5 mM of ethanol was produced with C. cellulovorans cultivation, both n-butanol (1.67 mM) and ethanol (1.89 mM) were detected with the cocultivation of C. cellulovorans and C. acetobutylicum. Regarding the enzymatic activity evaluation against rice straw and sugarcane bagasse, the rice straw cellulosome fraction was the most active when compared against rice straw. Furthermore, since we attempted to choose reaction conditions more efficiently for the degradation of sugarcane bagasse, a wet jet milling device together with L-cysteine as a reducing agent was used. As a result, we found that the degradation activity was almost twice as high with 10 mM L-cysteine compared with without it. These results will provide new insights for biomass utilization.
Automated Hyperparameter Optimization of Gradient Boosting Decision Tree Approach for Gold Mineral Prospectivity Mapping in the Xiong’ershan Area
Authors: Fan Mingjing , Xiao Keyan , Sun Li , Zhang Shuai , Xu Yang
Published: December 2022

The weak classifier ensemble algorithms based on the decision tree model, mainly include bagging (e.g., fandom forest-RF) and boosting (e.g., gradient boosting decision tree, eXtreme gradient boosting), the former reduces the variance for the overall generalization error reduction while the latter focuses on reducing the overall bias to that end. Because of its straightforward idea, it is prevalent in MPM (mineral prospectivity mapping). However, an inevitable problem in the application of such methods is the hyperparameters tuning which is a laborious and time-consuming task. The selection of hyperparameters suitable for a specific task is worth investigating. In this paper, a tree Parzen estimator-based GBDT (gradient boosting decision tree) model (TPE-GBDT) was introduced for hyperparameters tuning (e.g., loss criterion, n_estimators, learning_rate, max_features, subsample, max_depth, min_impurity_decrease). Then, the geological data of the gold deposit in the Xiong ‘ershan area was used to create training data for MPM and to compare the TPE-GBDT and random search-GBDT training results. Results showed that the TPE-GBDT model can obtain higher accuracy than random search-GBDT in a shorter time for the same parameter space, which proves that this algorithm is superior to random search in principle and more suitable for complex hyperparametric tuning. Subsequently, the validation measures, five-fold cross-validation, confusion matrix and success rate curves were employed to evaluate the overall performance of the hyperparameter optimization models. The results showed good scores for the predictive models. Finally, according to the maximum Youden index as the threshold to divide metallogenic potential areas and non-prospective areas, the high metallogenic prospect area (accounts for 10.22% of the total study area) derived by the TPE-GBDT model contained > 90% of the known deposits and provided a preferred range for future exploration work.
Hydrodynamic Hysteresis and Solute Transport in Agglomerated Heaps under Irrigation, Stacking, and Bioleaching Controlling
Authors: Wang Leiming , Yin Shenghua , Zhang Xuelan , Yan Zepeng , Liao Wensheng
Published: December 2022

Hydrodynamic hysteresis exists widely in agglomerated heaps with well-developed intra-pores, and it directly affects solute transports and bioleaching reaction. In this paper, the dynamic liquid retention behavior under different heap porosity and irrigation condition is quantified via a novel real-time, in-situ liquid retention characterizing system (RILRCS), and the potential effects of initial liquid retention on solute transport and leaching reaction are carefully discussed. The results show that the immobile liquid is dominant in agglomerated heaps. The ratio of immobile and mobile liquid (η) dynamically changes due to mineral dissolution and new flow path appearances. The η normally increases and mobile liquid occupies a higher proportion due to acidic leaching reactions, especially at a smaller Rg (10.32 mm) and a larger u (0.10 mm/s). The dynamic liquid retention is more sensitive to the diameter of packed feeds (Rg) and superficial flow rate (u) instead of leaching reactions. This might be because the damage of leaching reaction on minerals pores/voids is limited and cannot extensively change the potential pore channels or fluid flow paths. Based on pulse tracing and conductivity tests, we reveal that the solute resides longer under a slower u and smaller packed Rg condition, which corresponds well with desirable copper leaching efficiency. Specifically, the liquid hysteresis behavior is more obvious at a lower u (0.01 mm/s) and smaller Rg (10.32 mm). This paper gives a good reference to ascertain the liquid retention and hydrodynamic hysteresis and promote mineral leaching performance.
Multi-Dimensional Data Fusion for Mineral Prospectivity Mapping (MPM) Using Fuzzy-AHP Decision-Making Method, Kodegan-Basiran Region, East Iran
Authors: Shabani Ali , Ziaii Mansour , Monfared Mehrdad , Shirazy Adel , Shirazi Aref
Published: December 2022

Analyzing and fusing information layers of exploratory parameters is a crucial stride for increasing the accuracy of pinpointing mineral potential zones in the reconnaissance stage of mineral exploration. Remote sensing, geophysical, geochemical, and geology data were analyzed and fused for identify metallic mineralization in the Kodegan-Basiran region (East Iran). Landsat 7 Enhanced Thematic Mapper Plus (ETM+), aeromagnetic data, geological data, and geochemical stream sediment samples were utilized. The study area contains some copper indices and mines. Thus, the main focus of this study was identifying the zones with high potential for metallic copper mineralization. A two-stage methodology was implemented in this study: First, extraction of the exploratory parameters related to metallic mineralization and second is data fusion by the hybrid fuzzy-analytic hierarchy process (Fuzzy-AHP) method. Hydrothermal alterations and iron oxides in the area were mapped by applying the optimum index factor (OIF), band ratio (BR), and least squared fit (LS-Fit) to ETM+ data. Intrusive masses were positioned as one of the effective parameters in identifying metallic mineralization zones using the gradient tensor method to assess aeromagnetic data. In order to determine the threshold concentration and the location of mineralization anomalies, the K-means clustering algorithm, vertical geochemical zonality (Vz) index, as well as concentration-area (C-A) multi fractal and singularity analysis were implemented on the geochemical data. In conclusion, the potential zones of metallic mineralization in the Kodegan-Basiran region were displayed in a mineral prospectivity map (MPM) derived from the Fuzzy-AHP decision-making method. Finally, to validate the prospectivity map of metallic mineralization, a control area was selected and surveyed by collecting mineralogical, petrological, and stream sediment samples. Field works confirmed the mineralization of Cu and Fe sulfides, oxides, and hydroxides. The high potential areas identified in the MPM can be considered as targets for future Cu exploration in the Kodegan-Basiran area.