bluuebunny/crossref_metadata_2025 huggingface dataset:
Supplementary Figures + Legend from Optimized Doxorubicin Chemotherapy for Diffuse Large B-cell Lymphoma Exploits Nanocarrier Delivery to Transferrin Receptors
Authors: Arumov Artavazd , Liyanage Piumi Y. , Trabolsi Asaad , Roberts Evan R. , Li Lingxiao , Ferreira Braulio C.L.B. , Gao Zhen , Ban Yuguang , Newsam Austin D. , Taggart Melissa W. , Vega Francisco , Bilbao Daniel , Leblanc Roger M. , Schatz Jonathan H.
Published: March 2023

Supplemental Figures 1-9. Figure S1. Carbon-Nitride Dot Synthesis. Figure S2. Characterization of CND-Dox-TF. Figure S3. CND cytotoxicity. Figure S4. Cell surface TFR1 expression and receptor recycling. Figure S5. Rapid nuclear entry by Dox after CND-Dox-TF treatment in DLBCL. Figure S6. HEK293 is a model cell line for elucidating CND-Dox-TF mechanism. Figure S7. CND-Dox-TF working dose identified. Figure S8. CND-Dox-TF has improved toxicity profile compared to Dox. Figure S9. R-nanoCHOP treatment has favorable toxicity profile in non-malignant organs.
Supplementary Figures from Systematic Analysis of Intronic miRNAs Reveals Cooperativity within the Multicomponent FTX Locus to Promote Colon Cancer Development
Authors: Kwok Zhi Hao , Zhang Bin , Chew Xiao Hong , Chan Jia Jia , Teh Velda , Yang Henry , Kappei Dennis , Tay Yvonne
Published: March 2023

Figure S1 showing FTX-derived miRNAs are upregulated in colon cancer patients. Figure S2 showing FTX possesses oncogenic properties in colon cancer. Figure S3 showing FTX interacts with DHX9 and DICER. Figure S4 showing intronic miR-374b and -545 possess oncogenic properties in colon cancer. Figure S5 showing miR-374b targets PTEN in colon cancer. Figure S6 showing miR-545 targets RIG-I in colon cancer. Figure S7 showing cooperativity between FTX, miR-374b and -545 enhances the growth of colon cancer cells
Supplementary Data from The Inhibitor of Apoptosis Protein Livin Confers Resistance to Fas-Mediated Immune Cytotoxicity in Refractory Lymphoma
Authors: Sugihara Eiji , Hashimoto Norisato , Osuka Satoru , Shimizu Takatsune , Ueno Sayaka , Okazaki Shogo , Yaguchi Tomonori , Kawakami Yutaka , Kosaki Kenjiro , Sato Taka-Aki , Okamoto Shinichiro , Saya Hideyuki
Published: March 2023

Supplementary materials and methods and figures
Supplementary Table S1 from RIG-I–Like Receptor LGP2 Is Required for Tumor Control by Radiotherapy
Authors: Zheng Wenxin , Ranoa Diana Rose E. , Huang Xiaona , Hou Yuzhu , Yang Kaiting , Poli Elizabeth C. , Beckett Michael A. , Fu Yang-Xin , Weichselbaum Ralph R.
Published: March 2023

Table S1. Shows the enrichment scores of gene sets enriched in tumors with high frequency of DCs
Supplementary Data from Matricellular Protein WISP2 Is an Endogenous Inhibitor of Collagen Linearization and Cancer Metastasis
Authors: Janjanam Jagadeesh , Pano Glendin , Wang Ruishan , Minden-Birkenmaier Benjamin A. , Breeze-Jones Hannah , Baker Eleanor , Garcin Cecile , Clayton Georgia , Shirinifard Abbas , Zaske Ana Maria , Finkelstein David , Labelle Myriam
Published: March 2023

Supplementary Materials and Methods; Supplementary Figures S1 to S8; Supplementary Figure S1. WISP2 inhibits WISP1-induced Col I linearization; Supplementary Figure S2. WISP2 is less abundant in tumors than in adjacent normal tissues and is an inhibitor of WISP1-induced tumor cell invasion though Col I; Supplementary Figure S3. The C-terminal domain of WISP1 drives WISP1-induced cell invasion through Col I but is dispensable for WISP1-Col I binding; Supplementary Figure S4. Wisp1 is expressed by tumor cells and cancer-associated fibroblast (CAF)-enriched stromal cells isolated from primary breast tumors; Supplementary Figure S5. WISP2 and WISP1DCT block TGFb1-induced cell invasion through Col I by acting as WISP1 antagonists; Supplementary Figure S6. WISP2 limits collagen linearization but does not affect total type I collagen levels in 4T1 breast tumors; Supplementary Figure S7. WISP2 limits collagen linearization in aggressive 4T1-Wisp1 tumors and inhibits breast cancer metastasis; Supplementary Figure S8. WISP1 promotes whereas WISP2 inhibits human breast cancer metastasis; Supplementary Tables S1 to S3; Supplementary Table S1. gBlock sequence for the generation of pCDH-EF1-Wisp2+CTT2A- puro from pCDH-EF1-Wisp2-T2A-puro; Supplementary Table S2. Primers used for cloning; Supplementary Table S3. gRNAs targeting Wisp1 and of non-targeting control gRNAs; Supplementary References
Supplementary Data from Hypoxia-Driven Oncometabolite L-2HG Maintains Stemness-Differentiation Balance and Facilitates Immune Evasion in Pancreatic Cancer
Authors: Gupta Vineet K. , Sharma Nikita S. , Durden Brittany , Garrido Vanessa T. , Kesh Kousik , Edwards Dujon , Wang Dezhen , Myer Ciara , Mateo-Victoriano Beatriz , Kollala Sai Sundeep , Ban Yuguang , Gao Zhen , Bhattacharya Sanjoy K. , Saluja Ashok , Singh Pankaj K. , Banerjee Sulagna
Published: March 2023

RNA seq data file after treatment of MIA-PACA2 cells with L-2HG
Table S3 from Targeting Adenosine with Adenosine Deaminase 2 to Inhibit Growth of Solid Tumors
Authors: Wang Lin , Londono Luz M. , Cowell Jessica , Saatci Ozge , Aras Mertkaya , Ersan Pelin G. , Serra Sara , Pei Hong , Clift Renee , Zhao Qiping , Phan Kim B. , Huang Lei , LaBarre Michael J. , Li Xiaoming , Shepard H. Michael , Deaglio Silvia , Linden Joel , Thanos Christopher D. , Sahin Ozgur , Cekic Caglar
Published: March 2023

Supplementary Table 3
Supplementary Table 2 from Survivin Expression Is Differentially Regulated by a Selective Cross-talk between RBM38 and miRNAs let-7b or miR-203a
Authors: Lucchesi Christopher A. , Zhang Jin , Ma Buyong , Nussinov Ruth , Chen Xinbin
Published: March 2023

List of all the peptide sequences used in the study.
Supplementary Figure 3 from CKAP2L Promotes Non–Small Cell Lung Cancer Progression through Regulation of Transcription Elongation
Authors: Monteverde Tiziana , Sahoo Sudhakar , La Montagna Manuela , Magee Peter , Shi Lei , Lee Dave , Sellers Robert , Baker Alexander R. , Leong Hui Sun , Fassan Matteo , Garofalo Michela
Published: March 2023

Downregulation of MYC and KRAS signalling
Supplementary Data from Multiomics Characterization of Low-Grade Serous Ovarian Carcinoma Identifies Potential Biomarkers of MEK Inhibitor Sensitivity and Therapeutic Vulnerability
Authors: Shrestha Raunak , Llaurado Fernandez Marta , Dawson Amy , Hoenisch Joshua , Volik Stanislav , Lin Yen-Yi , Anderson Shawn , Kim Hannah , Haegert Anne M. , Colborne Shane , Wong Nelson K.Y. , McConeghy Brian , Bell Robert H. , Brahmbhatt Sonal , Lee Cheng-Han , DiMattia Gabriel E. , Le Bihan Stephane , Morin Gregg B. , Collins Colin C. , Carey Mark S.
Published: March 2023

Supplementary Data from Multiomics Characterization of Low-Grade Serous Ovarian Carcinoma Identifies Potential Biomarkers of MEK Inhibitor Sensitivity and Therapeutic Vulnerability
Figure S4 from Altering the Microbiome Inhibits Tumorigenesis in a Mouse Model of Oviductal High-Grade Serous Carcinoma
Authors: Chen Lixing , Zhai Yali , Wang Yisheng , Fearon Eric R. , Núñez Gabriel , Inohara Naohiro , Cho Kathleen R.
Published: March 2023

Specific bacteria associated with tumor development and post-antibiotic treatment microbiota transition
Figure S3 from Dual Covalent Inhibition of PKM and IMPDH Targets Metabolism in Cutaneous Metastatic Melanoma
Authors: Zerhouni Marwa , Martin Anthony R. , Furstoss Nathan , Gutierrez Vincent S. , Jaune Emilie , Tekaya Nedra , Beranger Guillaume E. , Abbe Patricia , Regazzetti Claire , Amdouni Hella , Driowya Mohsine , Dubreuil Patrice , Luciano Frédéric , Jacquel Arnaud , Tulic Meri K. , Cluzeau Thomas , O'Hara Brendan P. , Ben-Sahra Issam , Passeron Thierry , Benhida Rachid , Robert Guillaume , Auberger Patrick , Rocchi Stéphane
Published: March 2023

Supplemental Figure 3
Supplementary Data from Disabling the Fanconi Anemia Pathway in Stem Cells Leads to Radioresistance and Genomic Instability
Authors: Deng Xinzhu , Tchieu Jason , Higginson Daniel S. , Hsu Kuo-Shun , Feldman Regina , Studer Lorenz , Shaham Shai , Powell Simon N. , Fuks Zvi , Kolesnick Richard
Published: March 2023

Fig. S1 Fig. S2 Fig. S3 Fig. S4 Fig. S5 Fig. S6 Fig. S7 Fig. S8 Fig. S9 Fig. S10 Fig. S11
Supplementary table 1 from Nonsense-Mediated RNA Decay Is a Unique Vulnerability of Cancer Cells Harboring SF3B1 or U2AF1 Mutations
Authors: Cheruiyot Abigael , Li Shan , Nonavinkere Srivatsan Sridhar , Ahmed Tanzir , Chen Yuhao , Lemacon Delphine S. , Li Ying , Yang Zheng , Wadugu Brian A. , Warner Wayne A. , Pruett-Miller Shondra M. , Obeng Esther A. , Link Daniel C. , He Dalin , Xiao Fei , Wang Xiaowei , Bailis Julie M. , Walter Matthew J. , You Zhongsheng
Published: March 2023

Supplementary table 1
Supplemental Material from Hypothermia Effectively Treats Tumors with Temperature-Sensitive p53 Mutations
Authors: Lu Junhao , Chen Lihong , Song Zheng , Das Mousumi , Chen Jiandong
Published: March 2023

Supplemental tables 1-3 and figures 1-9.
Supplementary Table S6 from YTHDF1 Promotes Gastric Carcinogenesis by Controlling Translation of FZD7
Authors: Pi Jingnan , Wang Wen , Ji Ming , Wang Xiaoshuang , Wei Xueju , Jin Jing , Liu Tao , Qiang Jiaqi , Qi Zhihong , Li Feng , Liu Yue , Ma Yanni , Si Yanmin , Huo Yue , Gao Yufeng , Chen Yiying , Dong Lei , Su Rui , Chen Jianjun , Rao Shuan , Yi Ping , Yu Shuyang , Wang Fang , Yu Jia
Published: March 2023

Survival analysis. Related to Figure 1.
Supplementary Table S3 from YTHDF1 Promotes Gastric Carcinogenesis by Controlling Translation of FZD7
Authors: Pi Jingnan , Wang Wen , Ji Ming , Wang Xiaoshuang , Wei Xueju , Jin Jing , Liu Tao , Qiang Jiaqi , Qi Zhihong , Li Feng , Liu Yue , Ma Yanni , Si Yanmin , Huo Yue , Gao Yufeng , Chen Yiying , Dong Lei , Su Rui , Chen Jianjun , Rao Shuan , Yi Ping , Yu Shuyang , Wang Fang , Yu Jia
Published: March 2023

The mutation information of m6A peaks on FZD7. Related to Figure 5.
Supplementary Figure S6 from YTHDF1 Promotes Gastric Carcinogenesis by Controlling Translation of FZD7
Authors: Pi Jingnan , Wang Wen , Ji Ming , Wang Xiaoshuang , Wei Xueju , Jin Jing , Liu Tao , Qiang Jiaqi , Qi Zhihong , Li Feng , Liu Yue , Ma Yanni , Si Yanmin , Huo Yue , Gao Yufeng , Chen Yiying , Dong Lei , Su Rui , Chen Jianjun , Rao Shuan , Yi Ping , Yu Shuyang , Wang Fang , Yu Jia
Published: March 2023

YTHDF1~FZD7~β-catenin axis promotes gastric cancer progression.
Supplementary Figure S5 from YTHDF1 Promotes Gastric Carcinogenesis by Controlling Translation of FZD7
Authors: Pi Jingnan , Wang Wen , Ji Ming , Wang Xiaoshuang , Wei Xueju , Jin Jing , Liu Tao , Qiang Jiaqi , Qi Zhihong , Li Feng , Liu Yue , Ma Yanni , Si Yanmin , Huo Yue , Gao Yufeng , Chen Yiying , Dong Lei , Su Rui , Chen Jianjun , Rao Shuan , Yi Ping , Yu Shuyang , Wang Fang , Yu Jia
Published: March 2023

YTHDF1 regulates the downstream players of the Wnt/β-catenin pathway.
Supplementary Data from Loss of KMT5C Promotes EGFR Inhibitor Resistance in NSCLC via LINC01510-Mediated Upregulation of MET
Authors: Pal Arpita S. , Agredo Alejandra , Lanman Nadia A. , Son Jihye , Sohal Ikjot Singh , Bains Manvir , Li Chennan , Clingerman Jenna , Gates Kayla , Kasinski Andrea L.
Published: March 2023

Supplementary Data from Loss of KMT5C Promotes EGFR Inhibitor Resistance in NSCLC via LINC01510-Mediated Upregulation of MET
Supplementary Data from Combined Inhibition of p38MAPK and PIKfyve Synergistically Disrupts Autophagy to Selectively Target Cancer Cells
Authors: O'Connell Constandina E. , Vassilev Alex
Published: March 2023

Supplementary Figure S1: Normal cells have consistently higher resistance to PIKfyve and p38MAPK inhibition than cancer cells. Supplementary Figure S2: JNK and p44/p42 MAP kinases protein and phosphorylation levels do not correlate with sensitivity to PIKfyve inhibition. Supplementary Figure S3: Manipulation of p38MAPK protein levels in resistant and sensitive cells changes their sensitivity to PIKfyve inhibition. Supplementary Figure S4: Synergistic cytotoxic effects of combined PIKfyve and p38MAPK inhibition. Supplementary Figure S5: Total cell count and SEMs in support of the data presented in Fig.3. Supplementary Figure S6: Inhibition of PIKfyve and/or p38MAPK kinases does not trigger apoptosis or activate the p53 stress response. Supplementary Figure S7: Combined PIKfyve and p38MAPK inhibition blocks autophagy in all cells. Supplementary Figure S8: WX8 is a specific inhibitor of PIKfyve.
Supplemental Text, Supplemental Figures, and Supplemental Tables from Cell Line–Specific Network Models of ER+ Breast Cancer Identify Potential PI3Kα Inhibitor Resistance Mechanisms and Drug Combinations
Authors: Gómez Tejeda Zañudo Jorge , Mao Pingping , Alcon Clara , Kowalski Kailey , Johnson Gabriela N. , Xu Guotai , Baselga Jose , Scaltriti Maurizio , Letai Anthony , Montero Joan , Albert Réka , Wagle Nikhil
Published: March 2023

Word file containing the Supplemental Text, Supplemental Figures S1-S6, and Supplemental Tables S1-S2.
Figure S5 from Circ0008399 Interaction with WTAP Promotes Assembly and Activity of the m6A Methyltransferase Complex and Promotes Cisplatin Resistance in Bladder Cancer
Authors: Wei Wenjie , Sun Jiayin , Zhang Hui , Xiao Xingyuan , Huang Chao , Wang Liang , Zhong He , Jiang Yangkai , Zhang Xiaoping , Jiang Guosong
Published: March 2023

Knockdown of circ0008399/WTAP/TNFAIP3 axis sensitizes EJ-CDDP resistant cells to CDDP-induced apoptosis.
Figure S3 from Circ0008399 Interaction with WTAP Promotes Assembly and Activity of the m6A Methyltransferase Complex and Promotes Cisplatin Resistance in Bladder Cancer
Authors: Wei Wenjie , Sun Jiayin , Zhang Hui , Xiao Xingyuan , Huang Chao , Wang Liang , Zhong He , Jiang Yangkai , Zhang Xiaoping , Jiang Guosong
Published: March 2023

Knockdown of circ0008399/WTAP/TNFAIP3 pathway inhibits the viability and anchorage-independent growth of BC cells.
Figure S3 from Therapeutic Targeting of DGKA-Mediated Macropinocytosis Leads to Phospholipid Reprogramming in Tuberous Sclerosis Complex
Authors: Kovalenko Andrii , Sanin Andres , Kosmas Kosmas , Zhang Long , Wang Ji , Akl Elie W. , Giannikou Krinio , Probst Clemens K. , Hougard Thomas R. , Rue Ryan W. , Krymskaya Vera P. , Asara John M. , Lam Hilaire C. , Kwiatkowski David J. , Henske Elizabeth P. , Filippakis Harilaos
Published: March 2023

Ritanserin inhibits macropinocytosis and acidic organelle homeostasis in TSC2-deficient cells
Figure S7 from T Cells Expanded from PD-1+ Peripheral Blood Lymphocytes Share More Clones with Paired Tumor-Infiltrating Lymphocytes
Authors: Li Tiepeng , Zhao Lingdi , Yang Yonghao , Wang Yao , Zhang Yong , Guo Jindong , Chen Guangyu , Qin Peng , Xu Benling , Ma Baozhen , Zhang Fang , Shang Yiman , Li Qingjun , Zhang Kai , Yuan Dongfeng , Feng Chaojie , Ma Yan , Liu Zhiyong , Tian Zhichao , Li Hongle , Wang Shengdian , Gao Quanli
Published: March 2023

The accumulative frequency of shared TIL clones in TCR-β repertoire of PD-1+ T from patient MM-4 before and after in vitro expansion.
Supplementary Data from Stomatin-Mediated Inhibition of the Akt Signaling Axis Suppresses Tumor Growth
Authors: Rahman Nor Idayu A. , Sato Akira , Tsevelnorov Khurelbaatar , Shimizu Akio , Komeno Masahiro , Ahmat Amin Mohammad Khusni Bin , Molla Md Rasel , Soh Joanne Ern Chi , Nguyen Le Kim Chi , Wada Akinori , Kawauchi Akihiro , Ogita Hisakazu
Published: March 2023

Supplementary Materials & Methods and Figures
Figure S2 from T Cells Expanded from PD-1+ Peripheral Blood Lymphocytes Share More Clones with Paired Tumor-Infiltrating Lymphocytes
Authors: Li Tiepeng , Zhao Lingdi , Yang Yonghao , Wang Yao , Zhang Yong , Guo Jindong , Chen Guangyu , Qin Peng , Xu Benling , Ma Baozhen , Zhang Fang , Shang Yiman , Li Qingjun , Zhang Kai , Yuan Dongfeng , Feng Chaojie , Ma Yan , Liu Zhiyong , Tian Zhichao , Li Hongle , Wang Shengdian , Gao Quanli
Published: March 2023

Information on previous treatment of patients included in the observational study.LTIL-02.
Supplementary Materials and Methods from Characterizing Macrophage Diversity in Metastasis-Bearing Lungs Reveals a Lipid-Associated Macrophage Subset
Authors: Huggins Danielle N. , LaRue Rebecca S. , Wang Ying , Knutson Todd P. , Xu Yingzheng , Williams Jesse W. , Schwertfeger Kathryn L.
Published: March 2023

Includes additional materials and methods related to the manuscript
Table S4 from PDSS1-Mediated Activation of CAMK2A-STAT3 Signaling Promotes Metastasis in Triple-Negative Breast Cancer
Authors: Yu Tian-Jian , Liu Ying-Ying , Li Xiao-Guang , Lian Bi , Lu Xun-Xi , Jin Xi , Shao Zhi-Ming , Hu Xin , Di Gen-Hong , Jiang Yi-Zhou
Published: March 2023

Supplementary Data
Table S2 from DNA Damage Response Protein CHK2 Regulates Metabolism in Liver Cancer
Authors: Lulli Matteo , Del Coco Laura , Mello Tommaso , Sukowati Caecilia , Madiai Stefania , Gragnani Laura , Forte Paolo , Fanizzi Francesco Paolo , Mazzocca Antonio , Rombouts Krista , Galli Andrea , Carloni Vinicio
Published: March 2023

Table S2. % 13C enrichment in cell culture media (CCM ) for 13C-glucose, 13C-alanine and 13C-lactate obtained by 1H NMR analysis.
Supplementary Table S1 from The Common Germline TP53-R337H Mutation Is Hypomorphic and Confers Incomplete Penetrance and Late Tumor Onset in a Mouse Model
Authors: Jeffers John R. , Pinto Emilia M. , Rehg Jerold E. , Clay Michael R. , Wang Jinling , Neale Geoffrey , Heath Richard J. , Lozano Guillermina , Lalli Enzo , Figueiredo Bonald C. , Pappo Alberto S. , Rodriguez-Galindo Carlos , Chen Wenan , Pounds Stanley , Ribeiro Raul C. , Zambetti Gerard P.
Published: March 2023

Mouse Cohorts and Associated Pathology
Supplement Figure 6 from Targeting an Inducible SALL4-Mediated Cancer Vulnerability with Sequential Therapy
Authors: Yang Junyu , Gao Chong , Liu Miao , Liu Yao-Chung , Kwon Junsu , Qi Jun , Tian Xi , Stein Alicia , Liu Yanjing V. , Kong Nikki R. , Wu Yue , Yin Shenyi , Xi Jianzhong , Chen Zhiyuan , Kumari Kalpana , Wong Hannan , Luo Hongbo , Silberstein Leslie E. , Thoms Julie A.I. , Unnikrishnan Ashwin , Pimanda John E. , Tenen Daniel G. , Chai Li
Published: March 2023

Supplement Figure 6
Supplement Figure 2 from Targeting an Inducible SALL4-Mediated Cancer Vulnerability with Sequential Therapy
Authors: Yang Junyu , Gao Chong , Liu Miao , Liu Yao-Chung , Kwon Junsu , Qi Jun , Tian Xi , Stein Alicia , Liu Yanjing V. , Kong Nikki R. , Wu Yue , Yin Shenyi , Xi Jianzhong , Chen Zhiyuan , Kumari Kalpana , Wong Hannan , Luo Hongbo , Silberstein Leslie E. , Thoms Julie A.I. , Unnikrishnan Ashwin , Pimanda John E. , Tenen Daniel G. , Chai Li
Published: March 2023

Supplement Figure 2
Supplementary Tables from Recruitment of KMT2C/MLL3 to DNA Damage Sites Mediates DNA Damage Responses and Regulates PARP Inhibitor Sensitivity in Cancer
Authors: Chang Antao , Liu Liang , Ashby Justin M. , Wu Dan , Chen Yanan , O'Neill Stacey S. , Huang Shan , Wang Juan , Wang Guanwen , Cheng Dongmei , Tan Xiaoming , Petty W.J. , Pasche Boris C. , Xiang Rong , Zhang Wei , Sun Peiqing
Published: March 2023

Supplementary Tables
Supplemental Methods from Hypoxia Promotes Breast Cancer Cell Growth by Activating a Glycogen Metabolic Program
Authors: Tang Ke , Zhu Liyan , Chen Jie , Wang Dianheng , Zeng Liping , Chen Chen , Tang Liang , Zhou Li , Wei Keke , Zhou Yabo , Lv Jiadi , Liu Yuying , Zhang Huafeng , Ma Jingwei , Huang Bo
Published: March 2023

Supplemental Methods
Supplementary Data from Landscape of MicroRNA Regulatory Network Architecture and Functional Rerouting in Cancer
Authors: Hua Xu , Li Yongsheng , Pentaparthi Sairahul R. , McGrail Daniel J. , Zou Raymond , Guo Li , Shrawat Aditya , Cirillo Kara M. , Li Qing , Bhat Akshay , Xu Min , Qi Dan , Singh Ashok , McGrath Francis , Andrews Steven , Aung Kyaw Lwin , Das Jishnu , Zhou Yunyun , Lodi Alessia , Mills Gordon B. , Eckhardt S. Gail , Mendillo Marc L. , Tiziani Stefano , Wu Erxi , Huang Jason H. , Sahni Nidhi , Yi S. Stephen
Published: March 2023

Supplementary Figures and Supplementary Table S1
Table S2 from Tet2 Inactivation Enhances the Antitumor Activity of Tumor-Infiltrating Lymphocytes
Authors: Lee Minjung , Li Jianfang , Li Jia , Fang Shaohai , Zhang Joanna , Vo Anh Tran Tram , Han Wei , Zeng Hongxiang , Isgandarova Sevinj , Martinez-Moczygemba Margarita , Zhou Yubin , Sun Deqiang , Huang Yun
Published: March 2023

Cluster marker genes of Single cell RNA-seq
Supplementary Data from Landscape of MicroRNA Regulatory Network Architecture and Functional Rerouting in Cancer
Authors: Hua Xu , Li Yongsheng , Pentaparthi Sairahul R. , McGrail Daniel J. , Zou Raymond , Guo Li , Shrawat Aditya , Cirillo Kara M. , Li Qing , Bhat Akshay , Xu Min , Qi Dan , Singh Ashok , McGrath Francis , Andrews Steven , Aung Kyaw Lwin , Das Jishnu , Zhou Yunyun , Lodi Alessia , Mills Gordon B. , Eckhardt S. Gail , Mendillo Marc L. , Tiziani Stefano , Wu Erxi , Huang Jason H. , Sahni Nidhi , Yi S. Stephen
Published: March 2023

Supplementary Table S3
Supplementary Data from Rapid Depletion of Intratumoral Regulatory T Cells Induces Synchronized CD8 T- and NK-cell Activation and IFNγ-Dependent Tumor Vessel Regression
Authors: Kurebayashi Yutaka , Olkowski Colleen P. , Lane Kelly C. , Vasalatiy Olga V. , Xu Biying C. , Okada Ryuhei , Furusawa Aki , Choyke Peter L. , Kobayashi Hisataka , Sato Noriko
Published: March 2023

Supplementary Materials and Methods, Table and Figures/Figure legends
Supplementary Figures from A Fusion Transcription Factor–Driven Cancer Progresses to a Fusion-Independent Relapse via Constitutive Activation of a Downstream Transcriptional Target
Authors: Boudjadi Salah , Pandey Puspa Raj , Chatterjee Bishwanath , Nguyen Thanh Hung , Sun Wenyue , Barr Frederic G.
Published: March 2023

This file contains Supplementary figures 1 to 6
Supplementary Figure S2 from Targeting eIF4A-Dependent Translation of KRAS Signaling Molecules
Authors: Singh Kamini , Lin Jianan , Lecomte Nicolas , Mohan Prathibha , Gokce Askan , Sanghvi Viraj R. , Jiang Man , Grbovic-Huezo Olivera , Burčul Antonija , Stark Stefan G. , Romesser Paul B. , Chang Qing , Melchor Jerry P. , Beyer Rachel K. , Duggan Mark , Fukase Yoshiyuki , Yang Guangli , Ouerfelli Ouathek , Viale Agnes , de Stanchina Elisa , Stamford Andrew W. , Meinke Peter T. , Rätsch Gunnar , Leach Steven D. , Ouyang Zhengqing , Wendel Hans-Guido
Published: March 2023

Supplementary Figure S2
Supplementary Data from HDAC2 Facilitates Pancreatic Cancer Metastasis
Authors: Krauß Lukas , Urban Bettina C. , Hastreiter Sieglinde , Schneider Carolin , Wenzel Patrick , Hassan Zonera , Wirth Matthias , Lankes Katharina , Terrasi Andrea , Klement Christine , Cernilogar Filippo M. , Öllinger Rupert , de Andrade Krätzig Niklas , Engleitner Thomas , Schmid Roland M. , Steiger Katja , Rad Roland , Krämer Oliver H. , Reichert Maximilian , Schotta Gunnar , Saur Dieter , Schneider Günter
Published: March 2023

Supplementary Data from HDAC2 Facilitates Pancreatic Cancer Metastasis
Supplementary Figure from Integrated Screens Identify CDK1 as a Therapeutic Target in Advanced Gastrointestinal Stromal Tumors
Authors: Lu Xiaojing , Pang Yuzhi , Cao Hui , Liu Xiaoxiao , Tu Lin , Shen Yanying , Jia Xiaona , Lee Jen-Chieh , Wang Yuexiang
Published: March 2023

Supplementary Figure 1-8
Supplementary Data from Development of Novel Aptamer-Based Targeted Chemotherapy for Bladder Cancer
Authors: Wang Yao , Zhang Yang , Li Peng-Chao , Guo Jiajie , Huo Fan , Yang Jintao , Jia Ru , Wang Juan , Huang Qiju , Theodorescu Dan , Yu Hanyang , Yan Chao
Published: March 2023

Supplementary Data from Development of Novel Aptamer-Based Targeted Chemotherapy for Bladder Cancer
Supplementary Data from Noncanonical Function of AGO2 Augments T-cell Receptor Signaling in T-cell Prolymphocytic Leukemia
Authors: Braun Till , Stachelscheid Johanna , Bley Nadine , Oberbeck Sebastian , Otte Moritz , Müller Tony Andreas , Wahnschaffe Linus , Glaß Markus , Ommer Katharina , Franitza Marek , Gathof Birgit , Altmüller Janine , Hallek Michael , Auguin Daniel , Hüttelmaier Stefan , Schrader Alexandra , Herling Marco
Published: March 2023

Supplementary Data from Noncanonical Function of AGO2 Augments T-cell Receptor Signaling in T-cell Prolymphocytic Leukemia
Supplementary Figure from Bcl-xL Enforces a Slow-Cycling State Necessary for Survival in the Nutrient-Deprived Microenvironment of Pancreatic Cancer
Authors: Sela Yogev , Li Jinyang , Maheswaran Shivahamy , Norgard Robert , Yuan Salina , Hubbi Maimon , Doepner Miriam , Xu Jimmy P. , Ho Elaine S. , Mesaros Clementina , Sheehan Colin , Croley Grace , Muir Alexander , Blair Ian A. , Shalem Ophir , Dang Chi V. , Stanger Ben Z.
Published: March 2023

Supplementary Figure from Bcl-xL Enforces a Slow-Cycling State Necessary for Survival in the Nutrient-Deprived Microenvironment of Pancreatic Cancer
Supplementary Data from Liver Colonization by Colorectal Cancer Metastases Requires YAP-Controlled Plasticity at the Micrometastatic Stage
Authors: Heinz Maria C. , Peters Niek A. , Oost Koen C. , Lindeboom Rik G.H. , van Voorthuijsen Lisa , Fumagalli Arianna , van der Net Mirjam C. , de Medeiros Gustavo , Hageman Joris H. , Verlaan-Klink Ingrid , Borel Rinkes Inne H.M. , Liberali Prisca , Gloerich Martijn , van Rheenen Jacco , Vermeulen Michiel , Kranenburg Onno , Snippert Hugo J.G.
Published: March 2023

Supplementary Data from Liver Colonization by Colorectal Cancer Metastases Requires YAP-Controlled Plasticity at the Micrometastatic Stage
Supplementary Table from Dissecting the Oncogenic Roles of Keratin 17 in the Hallmarks of Cancer
Authors: Baraks Gabriella , Tseng Robert , Pan Chun-Hao , Kasliwal Saumya , Leiton Cindy V. , Shroyer Kenneth R. , Escobar-Hoyos Luisa F.
Published: March 2023

Supplementary Table from Dissecting the Oncogenic Roles of Keratin 17 in the Hallmarks of Cancer
Supplementary Data from CircRPN2 Inhibits Aerobic Glycolysis and Metastasis in Hepatocellular Carcinoma
Authors: Li Jia , Hu Zhi-Qiang , Yu Song-Yang , Mao Li , Zhou Zheng-Jun , Wang Peng-Cheng , Gong Yu , Su Sheng , Zhou Jian , Fan Jia , Zhou Shao-Lai , Huang Xiao-Wu
Published: March 2023

Supplementary Data from CircRPN2 Inhibits Aerobic Glycolysis and Metastasis in Hepatocellular Carcinoma
Supplementary Data from Autocrine Canonical Wnt Signaling Primes Noncanonical Signaling through ROR1 in Metastatic Castration-Resistant Prostate Cancer
Authors: Ma Fen , Arai Seiji , Wang Keshan , Calagua Carla , Yuan Amanda R. , Poluben Larysa , Gu Zhongkai , Russo Joshua W. , Einstein David J. , Ye Huihui , He Meng Xiao , Liu Yu , Van Allen Eliezer , Sowalsky Adam G. , Bhasin Manoj K. , Yuan Xin , Balk Steven P.
Published: March 2023

Supplementary Data from Autocrine Canonical Wnt Signaling Primes Noncanonical Signaling through ROR1 in Metastatic Castration-Resistant Prostate Cancer
Supplementary Figure from Targeting Ribonucleotide Reductase Induces Synthetic Lethality in PP2A-Deficient Uterine Serous Carcinoma
Authors: O'Connor Caitlin M. , Taylor Sarah E. , Miller Kathryn M. , Hurst Lauren , Haanen Terrance J. , Suhan Tahra K. , Zawacki Kaitlin P. , Noto Fallon K. , Trako Jonida , Mohan Arathi , Sangodkar Jaya , Zamarin Dmitriy , DiFeo Analisa , Narla Goutham
Published: March 2023

Supplementary Figure from Targeting Ribonucleotide Reductase Induces Synthetic Lethality in PP2A-Deficient Uterine Serous Carcinoma
Supplementary Data from Targeting Ribonucleotide Reductase Induces Synthetic Lethality in PP2A-Deficient Uterine Serous Carcinoma
Authors: O'Connor Caitlin M. , Taylor Sarah E. , Miller Kathryn M. , Hurst Lauren , Haanen Terrance J. , Suhan Tahra K. , Zawacki Kaitlin P. , Noto Fallon K. , Trako Jonida , Mohan Arathi , Sangodkar Jaya , Zamarin Dmitriy , DiFeo Analisa , Narla Goutham
Published: March 2023

Supplementary Data from Targeting Ribonucleotide Reductase Induces Synthetic Lethality in PP2A-Deficient Uterine Serous Carcinoma
Supplementary Figure from Reengineering Ponatinib to Minimize Cardiovascular Toxicity
Authors: Hnatiuk Anna P. , Bruyneel Arne A.N. , Tailor Dhanir , Pandrala Mallesh , Dheeraj Arpit , Li Wenqi , Serrano Ricardo , Feyen Dries A.M. , Vu Michelle M. , Amatya Prashila , Gupta Saloni , Nakauchi Yusuke , Morgado Isabel , Wiebking Volker , Liao Ronglih , Porteus Matthew H. , Majeti Ravindra , Malhotra Sanjay V. , Mercola Mark
Published: March 2023

Supplementary Figure from Reengineering Ponatinib to Minimize Cardiovascular Toxicity
Supplementary Data from Resistance to ATR Inhibitors Is Mediated by Loss of the Nonsense-Mediated Decay Factor UPF2
Authors: O'Leary Patrick C. , Chen Huadong , Doruk Yagmur U. , Williamson Tess , Polacco Benjamin , McNeal Andrew S. , Shenoy Tanushree , Kale Nupura , Carnevale Julia , Stevenson Erica , Quigley David A. , Chou Jonathan , Feng Felix Y. , Swaney Danielle L. , Krogan Nevan J. , Kim Minkyu , Diolaiti Morgan E. , Ashworth Alan
Published: March 2023

Supplementary Data from Resistance to ATR Inhibitors Is Mediated by Loss of the Nonsense-Mediated Decay Factor UPF2
Supplementary Table from The Reversible Fourth-Generation EGFR Tyrosine Kinase Inhibitor OBX02–011 Overcomes C797S-Mediated Resistance in Lung Cancer
Authors: Choi Yun Jung , Kim Da-Som , Sung Young Hoon , Kim Dong Ha , Im Kyungtaek , Lee Hyeonjeong , Lee Chae Won , Cho Jeongin , Min Joongkee , Woo Dong-Cheol , Kim Sung-Eun , Lee Sunho , Kong Yun Jeong , Ryu Hyung Chul , Kim Jae-Sun , Rengasamy Rajesh , Ji Wonjun , Choi Chang-Min , Lee Jae Cheol , Rho Jin Kyung
Published: March 2023

Supplementary Table from The Reversible Fourth-Generation EGFR Tyrosine Kinase Inhibitor OBX02–011 Overcomes C797S-Mediated Resistance in Lung Cancer
Supplementary Figure from Intratumoral Resolution of Driver Gene Mutation Heterogeneity in Renal Cancer Using Deep Learning
Authors: Acosta Paul H. , Panwar Vandana , Jarmale Vipul , Christie Alana , Jasti Jay , Margulis Vitaly , Rakheja Dinesh , Cheville John , Leibovich Bradley C. , Parker Alexander , Brugarolas James , Kapur Payal , Rajaram Satwik
Published: March 2023

Supplementary Figure from Intratumoral Resolution of Driver Gene Mutation Heterogeneity in Renal Cancer Using Deep Learning
Supplementary Data from PIM2 Expression Induced by Proinflammatory Macrophages Suppresses Immunotherapy Efficacy in Hepatocellular Carcinoma
Authors: Wang Jun-Cheng , Chen Dong-Ping , Lu Shi-Xun , Chen Jin-Bin , Wei Yuan , Liu Xue-Chao , Tang Yu-Hao , Zhang Rongxin , Chen Jian-Cong , Kan Anna , Xu Li , Zhang Yao-Jun , Hou Jiajie , Kuang Dong-Ming , Chen Min-Shan , Zhou Zhong-Guo
Published: March 2023

Supplementary Data from PIM2 Expression Induced by Proinflammatory Macrophages Suppresses Immunotherapy Efficacy in Hepatocellular Carcinoma
Supplementary Data from A Novel Selective Inhibitor JBI-589 Targets PAD4-Mediated Neutrophil Migration to Suppress Tumor Progression
Authors: Deng Hui , Lin Cindy , Garcia-Gerique Laura , Fu Shuyu , Cruz Zachary , Bonner Erin E. , Rosenwasser Matthew , Rajagopal Sridharan , Sadhu M Naveen , Gajendran Chandru , Zainuddin Mohd , Gosu Ramachandraiah , Sivanandhan Dhanalakshmi , Shelef Miriam A. , Nam Brian , Vogl Dan T. , Gabrilovich Dmitry I. , Nefedova Yulia
Published: March 2023

Supplementary Data from A Novel Selective Inhibitor JBI-589 Targets PAD4-Mediated Neutrophil Migration to Suppress Tumor Progression
Supplementary Data from Efficacy of CD40 Agonists Is Mediated by Distinct cDC Subsets and Subverted by Suppressive Macrophages
Authors: Murgaski Aleksandar , Kiss Máté , Van Damme Helena , Kancheva Daliya , Vanmeerbeek Isaure , Keirsse Jiri , Hadadi Eva , Brughmans Jan , Arnouk Sana M. , Hamouda Ahmed E.I. , Debraekeleer Ayla , Bosteels Victor , Elkrim Yvon , Boon Louis , Hoves Sabine , Vandamme Niels , Deschoemaeker Sofie , Janssens Sophie , Garg Abhishek D. , Vande Velde Greetje , Schmittnaegel Martina , Ries Carola H. , Laoui Damya
Published: March 2023

Supplementary Data from Efficacy of CD40 Agonists Is Mediated by Distinct cDC Subsets and Subverted by Suppressive Macrophages
Supplementary Figure S3 from Therapy-Induced Senescence Enhances the Efficacy of HER2-Targeted Antibody–Drug Conjugates in Breast Cancer
Authors: Duro-Sánchez Santiago , Nadal-Serrano Mercedes , Lalinde-Gutiérrez Marta , Arenas Enrique Javier , Bernadó Morales Cristina , Morancho Beatriz , Escorihuela Marta , Pérez-Ramos Sandra , Escrivá-de-Romaní Santiago , Gandullo-Sánchez Lucía , Pandiella Atanasio , Esteve-Codina Anna , Rodilla Verónica , Dijcks Fred A. , Dokter Wim H.A. , Cortés Javier , Saura Cristina , Arribas Joaquín
Published: March 2023

Effect of different concentration of doxorubicin or Cdk4/6i on the sensitivity to trastuzumab-based ADCs
Supplementary Data 4 from ATM Regulates Differentiation of Myofibroblastic Cancer-Associated Fibroblasts and Can Be Targeted to Overcome Immunotherapy Resistance
Authors: Mellone Massimiliano , Piotrowska Klaudia , Venturi Giulia , James Lija , Bzura Aleksandra , Lopez Maria A. , James Sonya , Wang Chuan , Ellis Matthew J. , Hanley Christopher J. , Buckingham Josephine F. , Cox Kerry L. , Hughes Gareth , Valge-Archer Viia , King Emma V. , Beers Stephen A. , Jaquet Vincent , Jones George D.D. , Savelyeva Natalia , Sayan Emre , Parsons Jason L. , Durant Stephen , Thomas Gareth J.
Published: March 2023

Significant DDR genesets (from Leading-Edge analysis in GSEA) used to make the DDR_TGFB_signature geneset
Supplementary Data 3 from ATM Regulates Differentiation of Myofibroblastic Cancer-Associated Fibroblasts and Can Be Targeted to Overcome Immunotherapy Resistance
Authors: Mellone Massimiliano , Piotrowska Klaudia , Venturi Giulia , James Lija , Bzura Aleksandra , Lopez Maria A. , James Sonya , Wang Chuan , Ellis Matthew J. , Hanley Christopher J. , Buckingham Josephine F. , Cox Kerry L. , Hughes Gareth , Valge-Archer Viia , King Emma V. , Beers Stephen A. , Jaquet Vincent , Jones George D.D. , Savelyeva Natalia , Sayan Emre , Parsons Jason L. , Durant Stephen , Thomas Gareth J.
Published: March 2023

GSEA between different tumour stromal datasets from GEO and DDR & myoCAF genesets
Supplementary Data from A Probody T Cell–Engaging Bispecific Antibody Targeting EGFR and CD3 Inhibits Colon Cancer Growth with Limited Toxicity
Authors: Boustany Leila M. , LaPorte Sherry L. , Wong Laurie , White Clayton , Vinod Veena , Shen Joel , Yu Wendy , Koditek David , Winter Michael B. , Moore Stephen J. , Mei Li , Diep Linnea , Huang Yuanhui , Liu Shouchun , Vasiljeva Olga , West Jim , Richardson Jennifer , Irving Bryan , Belvin Marcia , Kavanaugh W. Michael
Published: March 2023

Supplementary Data from A Probody T Cell–Engaging Bispecific Antibody Targeting EGFR and CD3 Inhibits Colon Cancer Growth with Limited Toxicity
Supplementary Data from HDAC5 Loss Enhances Phospholipid-Derived Arachidonic Acid Generation and Confers Sensitivity to cPLA2 Inhibition in Pancreatic Cancer
Authors: Pan Penglin , Qin Gengdu , Wang Bo , Yu Haixin , Chen Jie , Liu Jiaying , Bing Kaijian , Shen Jian , Ren Dianyun , Zhao Yuhan , Xia Wentao , Li Hui , Wu Heshui , Zhou Yingke
Published: March 2023

supplementary materials and data
Figures S1-S9 and Tables S1-S4
Supplementary Table from MEX3A Impairs DNA Mismatch Repair Signaling and Mediates Acquired Temozolomide Resistance in Glioblastoma
Authors: Gan Tian , Wang Yan , Xie Manyi , Wang Qiang , Zhao Saisai , Wang Peng , Shi Qinyu , Qian Xuanchen , Miao Faan , Shen Zhigang , Nie Er
Published: March 2023

Supplementary Table from MEX3A Impairs DNA Mismatch Repair Signaling and Mediates Acquired Temozolomide Resistance in Glioblastoma
Supplementary Data from Systematic Comparison of Pancreatic Ductal Adenocarcinoma Models Identifies a Conserved Highly Plastic Basal Cell State
Authors: Pitter Kenneth L. , Grbovic-Huezo Olivera , Joost Simon , Singhal Anupriya , Blum Melissa , Wu Katherine , Holm Matilda , Ferrena Alexander , Bhutkar Arjun , Hudson Anna , Lecomte Nicolas , de Stanchina Elisa , Chaligne Ronan , Iacobuzio-Donahue Christine A. , Pe'er Dana , Tammela Tuomas
Published: March 2023

Supplementary Data from Systematic Comparison of Pancreatic Ductal Adenocarcinoma Models Identifies a Conserved Highly Plastic Basal Cell State
Supplementary Data from CD248 Regulates Wnt Signaling in Pericytes to Promote Angiogenesis and Tumor Growth in Lung Cancer
Authors: Hong Chia-Lun , Yu I-Shing , Pai Chen-Hsueh , Chen Jin-Shing , Hsieh Min-Shu , Wu Hua-Lin , Lin Shu-Wha , Huang Hsiang-Po
Published: March 2023

Supplementary Data from CD248 Regulates Wnt Signaling in Pericytes to Promote Angiogenesis and Tumor Growth in Lung Cancer
Supplementary Data from ATF3 Reprograms the Bone Marrow Niche in Response to Early Breast Cancer Transformation
Authors: Perrone Milena , Chiodoni Claudia , Lecchi Mara , Botti Laura , Bassani Barbara , Piva Annamaria , Jachetti Elena , Milani Matteo , Lecis Daniele , Tagliabue Elda , Verderio Paolo , Sangaletti Sabina , Colombo Mario P.
Published: March 2023

This file include the Supplementary Table S2
Supplementary Figure 3 from Monounsaturated and Diunsaturated Fatty Acids Sensitize Cervical Cancer to Radiation Therapy
Authors: Muhammad Naoshad , Ruiz Fiona , Stanley Jennifer , Rashmi Ramachandran , Cho Kevin , Jayachandran Kay , Zahner Michael C. , Huang Yi , Zhang Jin , Markovina Stephanie , Patti Gary J. , Schwarz Julie K.
Published: March 2023

Unsaturated fatty acids radio-sensitize cervical cancer cells through a mechanism that includes upregulation in pp53 and p53 and induction of apoptosis.
Supplementary Dataset S9 from Loss of NF1 in Melanoma Confers Sensitivity to SYK Kinase Inhibition
Authors: Abecunas Cara , Whitehead Christopher E. , Ziemke Elizabeth K. , Baumann Douglas G. , Frankowski-McGregor Christy L. , Sebolt-Leopold Judith S. , Fallahi-Sichani Mohammad
Published: March 2023

Supplementary Dataset S9
Supplementary Dataset S8 from Loss of NF1 in Melanoma Confers Sensitivity to SYK Kinase Inhibition
Authors: Abecunas Cara , Whitehead Christopher E. , Ziemke Elizabeth K. , Baumann Douglas G. , Frankowski-McGregor Christy L. , Sebolt-Leopold Judith S. , Fallahi-Sichani Mohammad
Published: March 2023

Supplementary Dataset S8
Supplementary Information from SETDB1 Modulates Degradation of Phosphorylated RB and Anticancer Efficacy of CDK4/6 Inhibitors
Authors: Huang Zhenlin , Li Xiang , Tang Bo , Li Hao , Zhang Jianong , Sun Rui , Ma Jian , Pan Yunqian , Yan Binyuan , Zhou Yingke , Ding Donglin , Yan Yuqian , Jimenez Rafael , Orme Jacob J. , Jin Xin , Yang Jinjian , Huang Haojie , Jia Zhankui
Published: March 2023

Supplementary Figure S1-S8; Supplementary Table S1-S3
Supplementary MovieS2c from Immunotherapeutic Targeting and PET Imaging of DLL3 in Small-Cell Neuroendocrine Prostate Cancer
Authors: Chou Jonathan , Egusa Emily A. , Wang Sinan , Badura Michelle L. , Lee Fei , Bidkar Anil P. , Zhu Jun , Shenoy Tanushree , Trepka Kai , Robinson Troy M. , Steri Veronica , Huang Jiaoti , Wang Yuzhuo , Small Eric J. , Chan Emily , Stohr Bradley A. , Ashworth Alan , Delafontaine Brant , Rottey Sylvie , Cooke Keegan S. , Hashemi Sadraei Nooshin , Yu Brian , Salvati Mark , Bailis Julie M. , Feng Felix Y. , Flavell Robert R. , Aggarwal Rahul
Published: March 2023

Supplemental Movies 2a-2c: 22Rv1-NuclightGreen and SHP-77-NuclightRed mixed population co-cultures. Time-lapse movies of 22Rv1 cells (labeled with NuclightGreen) and SHP-77 cells (labeled with NuclightRed) co-cultured with T cells. Both the 22Rv1 and SHP-77 cells were plated at equal densities and treated with either NT control BiTE®, AMG 757, or the PSMA-targeting HLE BiTE, AMG 160. T cells were added to each well at an E:T ratio of 10:1. Images were captured every 4 hours at 4x magnification for 5 days.
a. 22Rv1, SHP-77, and T cells co-cultured with NT control BiTE®.
b. 22Rv1, SHP-77, and T cells co-cultured with AMG 757.
c. 22Rv1, SHP-77, and T cells co-cultured with AMG 160.
Supplementary Movie S8 from Plk1 Inhibitors and Abiraterone Synergistically Disrupt Mitosis and Kill Cancer Cells of Disparate Origin Independently of Androgen Receptor Signaling
Authors: Patterson Jesse C. , Varkaris Andreas , Croucher Peter J.P. , Ridinger Maya , Dalrymple Susan , Nouri Mannan , Xie Fang , Varmeh Shohreh , Jonas Oliver , Whitman Matthew A. , Chen Sen , Rashed Saleh , Makusha Lovemore , Luo Jun , Isaacs John T. , Erlander Mark G. , Einstein David J. , Balk Steven P. , Yaffe Michael B.
Published: March 2023

Example of mitotic arrest and cell death caused by abiraterone and onvansertib
Table S2 from Phagocytosis of Glioma Cells Enhances the Immunosuppressive Phenotype of Bone Marrow–Derived Macrophages
Authors: Wu Min , Wu Lingxiang , Wu Wei , Zhu Mengyan , Li Jianyu , Wang Ziyu , Li Jie , Ding Rong , Liang Yuan , Li Liangyu , Zhang Tingting , Huang Bin , Cai Yun , Li Kening , Li Lu , Zhang Rui , Hu Baoli , Lin Fan , Wang Xiuxing , Zheng Siyuan , Chen Jian , You Yongping , Jiang Tao , Zhang Junxia , Chen Hongshan , Wang Qianghu
Published: March 2023

Gene signatures used for ssGSEA
Table S1 from Phagocytosis of Glioma Cells Enhances the Immunosuppressive Phenotype of Bone Marrow–Derived Macrophages
Authors: Wu Min , Wu Lingxiang , Wu Wei , Zhu Mengyan , Li Jianyu , Wang Ziyu , Li Jie , Ding Rong , Liang Yuan , Li Liangyu , Zhang Tingting , Huang Bin , Cai Yun , Li Kening , Li Lu , Zhang Rui , Hu Baoli , Lin Fan , Wang Xiuxing , Zheng Siyuan , Chen Jian , You Yongping , Jiang Tao , Zhang Junxia , Chen Hongshan , Wang Qianghu
Published: March 2023

Clinical information of GBM patients included in this study
Supplementary Figures from Spatial Transcriptomic Analysis of a Diverse Patient Cohort Reveals a Conserved Architecture in Triple-Negative Breast Cancer
Authors: Bassiouni Rania , Idowu Michael O. , Gibbs Lee D. , Robila Valentina , Grizzard Pamela J. , Webb Michelle G. , Song Jiarong , Noriega Ashley , Craig David W. , Carpten John D.
Published: March 2023

Supplementary figures and figure legends
table s4 from The Oncogenic FOXL2 C134W Mutation Is a Key Driver of Granulosa Cell Tumors
Authors: Llano Elena , Todeschini Anne Laure , Felipe-Medina Natalia , Corte-Torres María D. , Condezo Yazmine B. , Sanchez-Martin Manuel , López-Tamargo Sara , Astudillo Aurora , Puente Xose S. , Pendas Alberto M. , Veitia Reiner A.
Published: March 2023

suppl. table 4
Table S3 from The Oncogenic FOXL2 C134W Mutation Is a Key Driver of Granulosa Cell Tumors
Authors: Llano Elena , Todeschini Anne Laure , Felipe-Medina Natalia , Corte-Torres María D. , Condezo Yazmine B. , Sanchez-Martin Manuel , López-Tamargo Sara , Astudillo Aurora , Puente Xose S. , Pendas Alberto M. , Veitia Reiner A.
Published: March 2023

Suppl table 3
Supplementary Data from HAND2 Assists MYCN Enhancer Invasion to Regulate a Noradrenergic Neuroblastoma Phenotype
Authors: Xu Man , Sun Ming , Zhang Xiyuan , Nguyen Rosa , Lei Haiyan , Shern Jack F. , Thiele Carol J. , Liu Zhihui
Published: March 2023

Table S2 shows sequence information of the siRNAs and sgRNAs.
Supplemental Tables from NFE2L2 Mutations Enhance Radioresistance in Head and Neck Cancer by Modulating Intratumoral Myeloid Cells
Authors: Guan Li , Nambiar Dhanya K. , Cao Hongbin , Viswanathan Vignesh , Kwok Shirley , Hui Angela B. , Hou Yuan , Hildebrand Rachel , von Eyben Rie , Holmes Brittany J. , Zhao Junfei , Kong Christina S. , Wamsley Nathan , Zhang Weiruo , Major Michael B. , Seol Seung W. , Sunwoo John B. , Hayes D. Neil , Diehn Maximilian , Le Quynh-Thu
Published: March 2023

Supplemental Table 1 shows patients distribution in OC cohorts from Stanford University. Supplemental Table 2 shows primers for mutagenesis. Supplemental Table 3 shows primers for real-time PCR. Supplemental Table 4 shows gene mutations identified by targeted next generation sequencing in a cohort of oral cavity cancer patients treated with surgery and postoperative (chemo)radiotherapy at Stanford University. Supplemental Table 5 shows tumor growth delay of indicated MOC1 xenografts using 1000mm3 tumor size as a proxy.
Supplementary Data from HAND2 Assists MYCN Enhancer Invasion to Regulate a Noradrenergic Neuroblastoma Phenotype
Authors: Xu Man , Sun Ming , Zhang Xiyuan , Nguyen Rosa , Lei Haiyan , Shern Jack F. , Thiele Carol J. , Liu Zhihui
Published: March 2023

Table S5 shows genes regulated by HAND2 or MYCN in LAN5 cells.
Supplemental Figure 5 from NFE2L2 Mutations Enhance Radioresistance in Head and Neck Cancer by Modulating Intratumoral Myeloid Cells
Authors: Guan Li , Nambiar Dhanya K. , Cao Hongbin , Viswanathan Vignesh , Kwok Shirley , Hui Angela B. , Hou Yuan , Hildebrand Rachel , von Eyben Rie , Holmes Brittany J. , Zhao Junfei , Kong Christina S. , Wamsley Nathan , Zhang Weiruo , Major Michael B. , Seol Seung W. , Sunwoo John B. , Hayes D. Neil , Diehn Maximilian , Le Quynh-Thu
Published: March 2023

Nrf2 mutation leads to extrinsic radiation resistance through recruitment of PMN-MDSC in tumors.
Supplementary Data from Sphingosine Kinase 2 in Stromal Fibroblasts Creates a Hospitable Tumor Microenvironment in Breast Cancer
Authors: Weigel Cynthia , Maczis Melissa A. , Palladino Elisa N.D. , Green Christopher D. , Maceyka Michael , Guo Chunqing , Wang Xiang-Yang , Dozmorov Mikhail G. , Milstien Sheldon , Spiegel Sarah
Published: March 2023

ADDITIONAL MATERIALS AND METHODS
Supplementary Data from Immunogenetic Determinants of Susceptibility to Head and Neck Cancer in the Million Veteran Program Cohort
Authors: Liu Yanhong , Kramer Jennifer R. , Sandulache Vlad C. , Yu Robert , Li Guojun , Chen Liang , Yusuf Zenab I. , Shi Yunling , Pyarajan Saiju , Tsavachidis Spyros , Jiao Li , Mierzwa Michelle L. , Chiao Elizabeth , Mowery Yvonne M. , Shuman Andrew , Shete Sanjay , Sikora Andrew G. , White Donna L.
Published: March 2023

Supplementary Tables
Supplementary Table S2 from METTL1-Mediated m7G tRNA Modification Promotes Lenvatinib Resistance in Hepatocellular Carcinoma
Authors: Huang Manling , Long Jianting , Yao Zhijia , Zhao Yi , Zhao Yutong , Liao Junbin , Lei Kai , Xiao Han , Dai Zihao , Peng Sui , Lin Shuibin , Xu Lixia , Kuang Ming
Published: March 2023

This table shows a list of primer and probe sequence used in our study.
Supplementary Tables from Sequential Targeting of Retinoblastoma and DNA Synthesis Pathways Is a Therapeutic Strategy for Sarcomas That Can Be Monitored in Real Time
Authors: Nguyen Tuyen Duong Thanh , Wang Yan , Bui Tuyen N. , Lazcano Rossana , Ingram Davis R. , Yi Min , Vakulabharanam Varshini , Luo Linjie , Pina Marc A. , Karakas Cansu , Li Mi , Kettner Nicole M. , Somaiah Neeta , Hougton Peter J. , Mawlawi Osama , Lazar Alexander J. , Hunt Kelly K. , Keyomarsi Khandan
Published: March 2023

This file contains 6 supplementary tables referred to in the text of the manuscript
Supplementary Materials and Methods from Sequential Targeting of Retinoblastoma and DNA Synthesis Pathways Is a Therapeutic Strategy for Sarcomas That Can Be Monitored in Real Time
Authors: Nguyen Tuyen Duong Thanh , Wang Yan , Bui Tuyen N. , Lazcano Rossana , Ingram Davis R. , Yi Min , Vakulabharanam Varshini , Luo Linjie , Pina Marc A. , Karakas Cansu , Li Mi , Kettner Nicole M. , Somaiah Neeta , Hougton Peter J. , Mawlawi Osama , Lazar Alexander J. , Hunt Kelly K. , Keyomarsi Khandan
Published: March 2023

This file contains the description of supplementary materials and methods that is referred to in the manuscript
Supplemental Table 4 from Mitochondrial Uncoupling Induces Epigenome Remodeling and Promotes Differentiation in Neuroblastoma
Authors: Jiang Haowen , Greathouse Rachel L. , Tiche Sarah Jane , Zhao Man , He Bo , Li Yang , Li Albert M. , Forgo Balint , Yip Michaela , Li Allison , Shih Moriah , Banuelos Selene , Zhou Meng-Ning , Gruber Joshua J. , Rankin Erinn B. , Hu Zhen , Shimada Hiroyuki , Chiu Bill , Ye Jiangbin
Published: March 2023

Primers for p53 mutation analysis
Supplementary Data from YAP-Activated SATB2 Is a Coactivator of NRF2 That Amplifies Antioxidative Capacity and Promotes Tumor Progression in Renal Cell Carcinoma
Authors: Jin Juan , Chen Fen , He Wenfang , Zhao Li , Lin Bo , Zheng Danna , Chen Li , He Hongchao , He Qiang
Published: March 2023

Figure S1-4
Supplementary Table 1 from PARP Inhibition Induces Synthetic Lethality and Adaptive Immunity in LKB1-Mutant Lung Cancer
Authors: Long Li-Li , Ma Si-Cong , Guo Ze-Qin , Zhang Yan-Pei , Fan Zhenzhen , Liu Li-Juan , Liu Li , Han Duan-Duan , Leng Meng-Xin , Wang Jian , Guo Xue-Jun , Tan Jia-Le , Cai Xiao-Ting , Lin Yan , Pan Xinghua , Wu De-Hua , Bai Xue , Dong Zhong-Yi
Published: March 2023

Sequences for qPCR primers.