bluuebunny/crossref_metadata_2025 huggingface dataset:
Supplementary Figure S2 from Epigenetic Silencing of miR-490-3p Reactivates the Chromatin Remodeler SMARCD1 to Promote Helicobacter pylori–Induced Gastric Carcinogenesis
Authors: Shen Jing , Xiao Zhangang , Wu William K.K. , Wang Maggie H. , To Ka F. , Chen Yangchao , Yang Weiqin , Li May S.M. , Shin Vivian Y. , Tong Joanna H. , Kang Wei , Zhang Lin , Li Minxing , Wang Lin , Lu Lan , Chan Ruby L.Y. , Wong Sunny H. , Yu Jun , Chan Matthew T.V. , Chan Francis K.L. , Sung Joseph J.Y. , Cheng Alfred S.L. , Cho Chi H.
Published: April 2023

Supplementary Figure S2: Expression and function of miR-490-3p.
Supplementary Figure S2 from Reprogramming of the ERRα and ERα Target Gene Landscape Triggers Tamoxifen Resistance in Breast Cancer
Authors: Thewes Verena , Simon Ronald , Schroeter Petra , Schlotter Magdalena , Anzeneder Tobias , Büttner Reinhard , Benes Vladimir , Sauter Guido , Burwinkel Barbara , Nicholson Robert I. , Sinn Hans-Peter , Schneeweiss Andreas , Deuschle Ulrich , Zapatka Marc , Heck Stefanie , Lichter Peter
Published: April 2023

Supplementary Figure S2. Chromatin immunoprecipitation (ChIP).
Supplementary Figure S1 from Constitutive Activation of Myosin-Dependent Contractility Sensitizes Glioma Tumor-Initiating Cells to Mechanical Inputs and Reduces Tissue Invasion
Authors: Wong Sophie Y. , Ulrich Theresa A. , Deleyrolle Loic P. , MacKay Joanna L. , Lin Jung-Ming G. , Martuscello Regina T. , Jundi Musa A. , Reynolds Brent A. , Kumar Sanjay
Published: April 2023

Supplementary Figure S1. Lack of serum does not render continuous GBM cell line U373-MG insensitive to matrix stiffness.
Supplementary Figure Legends from Constitutive Activation of Myosin-Dependent Contractility Sensitizes Glioma Tumor-Initiating Cells to Mechanical Inputs and Reduces Tissue Invasion
Authors: Wong Sophie Y. , Ulrich Theresa A. , Deleyrolle Loic P. , MacKay Joanna L. , Lin Jung-Ming G. , Martuscello Regina T. , Jundi Musa A. , Reynolds Brent A. , Kumar Sanjay
Published: April 2023

Legends for Supplementary Figures S1-S2.
Supplementary Material and Figure Legends from Immuno-PET Imaging of Engineered Human T Cells in Tumors
Authors: Mall Sabine , Yusufi Nahid , Wagner Ricarda , Klar Richard , Bianchi Henrique , Steiger Katja , Straub Melanie , Audehm Stefan , Laitinen Iina , Aichler Michaela , Peschel Christian , Ziegler Sibylle , Mustafa Mona , Schwaiger Markus , D'Alessandria Calogero , Krackhardt Angela M.
Published: April 2023

Supplementary Material and Figure Legends
Supplementary Figure S6 from Immuno-PET Imaging of Engineered Human T Cells in Tumors
Authors: Mall Sabine , Yusufi Nahid , Wagner Ricarda , Klar Richard , Bianchi Henrique , Steiger Katja , Straub Melanie , Audehm Stefan , Laitinen Iina , Aichler Michaela , Peschel Christian , Ziegler Sibylle , Mustafa Mona , Schwaiger Markus , D'Alessandria Calogero , Krackhardt Angela M.
Published: April 2023

Determination of different tumor rejection kinetics according to tumor size
Supplementary Figure S3 from Immuno-PET Imaging of Engineered Human T Cells in Tumors
Authors: Mall Sabine , Yusufi Nahid , Wagner Ricarda , Klar Richard , Bianchi Henrique , Steiger Katja , Straub Melanie , Audehm Stefan , Laitinen Iina , Aichler Michaela , Peschel Christian , Ziegler Sibylle , Mustafa Mona , Schwaiger Markus , D'Alessandria Calogero , Krackhardt Angela M.
Published: April 2023

Investigation of dynamics of tumor rejection mediated by TCR2.5D6-transduced TCM to determine biologically critical imaging time points in an ML2-based myeloid sarcoma model
Supplemental Movie S1 from Oncogenic G Protein GNAQ Induces Uveal Melanoma and Intravasation in Mice
Authors: Huang Jenny Li-Ying , Urtatiz Oscar , Van Raamsdonk Catherine D.
Published: April 2023

In this movie, a dark skinned Rosa26-floxed stop-GNAQ Q209L/+; Mitf-cre/+ mouse exhibits hyper-activity, head tilt, and flipping onto its back in its home cage. A lighter skinned, normally behaved Mitf-cre/+ control littermate is included for comparison.
Supplementary Figure Legends from Eradication of Acute Myeloid Leukemia with FLT3 Ligand–Targeted miR-150 Nanoparticles
Authors: Jiang Xi , Bugno Jason , Hu Chao , Yang Yang , Herold Tobias , Qi Jun , Chen Ping , Gurbuxani Sandeep , Arnovitz Stephen , Strong Jennifer , Ferchen Kyle , Ulrich Bryan , Weng Hengyou , Wang Yungui , Huang Hao , Li Shenglai , Neilly Mary Beth , Larson Richard A. , Le Beau Michelle M. , Bohlander Stefan K. , Jin Jie , Li Zejuan , Bradner James E. , Hong Seungpyo , Chen Jianjun
Published: April 2023

Legends for supplemental figures.
Supplemental Table 1 from Eradication of Acute Myeloid Leukemia with FLT3 Ligand–Targeted miR-150 Nanoparticles
Authors: Jiang Xi , Bugno Jason , Hu Chao , Yang Yang , Herold Tobias , Qi Jun , Chen Ping , Gurbuxani Sandeep , Arnovitz Stephen , Strong Jennifer , Ferchen Kyle , Ulrich Bryan , Weng Hengyou , Wang Yungui , Huang Hao , Li Shenglai , Neilly Mary Beth , Larson Richard A. , Le Beau Michelle M. , Bohlander Stefan K. , Jin Jie , Li Zejuan , Bradner James E. , Hong Seungpyo , Chen Jianjun
Published: April 2023

Clinical and molecular characteristics of the AML patients in GSE37642 cohort
Supplementary Figure 2 from Maximizing the Efficacy of MAPK-Targeted Treatment in PTENLOF/BRAFMUT Melanoma through PI3K and IGF1R Inhibition
Authors: Herkert Barbara , Kauffmann Audrey , Mollé Sandra , Schnell Christian , Ferrat Thomas , Voshol Hans , Juengert Janina , Erasimus Hélène , Marszalek Grégory , Kazic-Legueux Malika , Billy Eric , Ruddy David , Stump Mark , Guthy Daniel , Ristov Mitko , Calkins Keith , Maira Sauveur-Michel , Sellers William R. , Hofmann Francesco , Hall Michael N. , Brachmann Saskia M.
Published: April 2023

PI3Kβ inhibition induces p85/IRS2 interaction in a time-dependent manner in the PTENLOF/BRAFMUT melanoma cell line RVH-421 that is mediated by negative feedback signaling. A) Co-immunoprecipitation experiments were carried out using cell lysates of RVH-421 treated with the PI3Kbi for the indicated time and blotted for p85, and pTyr (IRS2). B)-D) Input lysates of the immunoprecipitation experiments shown in Figure 4 were immunoblotted with the indicated phospho-specific or total target protein antibodies. PI3Kβi=rac-KIN-193, mTORi=AZD8055, mTORCi=RAD001, PDK1i=GSK-2334470, AKTi=MK2206
Supplementary Table 4 from Cystine Deprivation Triggers Programmed Necrosis in VHL-Deficient Renal Cell Carcinomas
Authors: Tang Xiaohu , Wu Jianli , Ding Chien-Kuang , Lu Min , Keenan Melissa M. , Lin Chao-Chieh , Lin Chih-An , Wang Charles C. , George Daniel , Hsu David S. , Chi Jen-Tsan
Published: April 2023

Supplementary Table 4. Gene list of TNFalpha and VHL gene signature for "R score" projection analysis
Supplementary Table 1 from PDLIM1 Stabilizes the E-Cadherin/β-Catenin Complex to Prevent Epithelial–Mesenchymal Transition and Metastatic Potential of Colorectal Cancer Cells
Authors: Chen Hai-Ning , Yuan Kefei , Xie Na , Wang Kui , Huang Zhao , Chen Yan , Dou Qianhui , Wu Min , Nice Edouard C. , Zhou Zong-Guang , Huang Canhua
Published: April 2023

Supplementary Table 1:Clinicopathologic characteristics of CRC patients.
Supplemental Legends from Cancer Cell Dissemination and Homing to the Bone Marrow in a Zebrafish Model
Authors: Sacco Antonio , Roccaro Aldo M. , Ma Dongdong , Shi Jiantao , Mishima Yuji , Moschetta Michele , Chiarini Marco , Munshi Nikhil , Handin Robert I. , Ghobrial Irene M.
Published: April 2023

Legends for Supplemental Table S1 and Supplemental Figures S1-S3.
Supplementary table 6 from Estrogen Receptor α Promotes Breast Cancer by Reprogramming Choline Metabolism
Authors: Jia Min , Andreassen Trygve , Jensen Lasse , Bathen Tone Frost , Sinha Indranil , Gao Hui , Zhao Chunyan , Haldosen Lars-Arne , Cao Yihai , Girnita Leonard , Moestue Siver Andreas , Dahlman-Wright Karin
Published: April 2023

Association between CHPT1 expression in breast cancer samples and clinicopathological data.
Supplementary Figure 5 from miR-892b Silencing Activates NF-κB and Promotes Aggressiveness in Breast Cancer
Authors: Jiang Lili , Yu Liang , Zhang Xin , Lei Fangyong , Wang Lan , Liu Xiangxia , Wu Shu , Zhu Jinrong , Wu Geyan , Cao Lixue , Liu Aibin , Song Libing , Li Jun
Published: April 2023

Supplementary Figure 5. miR-892b directly suppresses multiple key components in the NF-kappaB cascade.
Supplementary Figure 4 from miR-892b Silencing Activates NF-κB and Promotes Aggressiveness in Breast Cancer
Authors: Jiang Lili , Yu Liang , Zhang Xin , Lei Fangyong , Wang Lan , Liu Xiangxia , Wu Shu , Zhu Jinrong , Wu Geyan , Cao Lixue , Liu Aibin , Song Libing , Li Jun
Published: April 2023

Supplementary Figure 4. Overexpression of miR-892b suppresses breast cancer progression in vitro.
Supplementary Figure 1 from miR-892b Silencing Activates NF-κB and Promotes Aggressiveness in Breast Cancer
Authors: Jiang Lili , Yu Liang , Zhang Xin , Lei Fangyong , Wang Lan , Liu Xiangxia , Wu Shu , Zhu Jinrong , Wu Geyan , Cao Lixue , Liu Aibin , Song Libing , Li Jun
Published: April 2023

Supplementary Figure 1. Silencing miR-892b induces NF-kappaB activity in breast cancer cells.
Supplementary figure 1 from Estrogen Receptor α Promotes Breast Cancer by Reprogramming Choline Metabolism
Authors: Jia Min , Andreassen Trygve , Jensen Lasse , Bathen Tone Frost , Sinha Indranil , Gao Hui , Zhao Chunyan , Haldosen Lars-Arne , Cao Yihai , Girnita Leonard , Moestue Siver Andreas , Dahlman-Wright Karin
Published: April 2023

Characterization of ERα cistromes for MCF7 and T47D cells
Supplementary Table from Hyperthermia Synergizes with Chemotherapy by Inhibiting PARP1-Dependent DNA Replication Arrest
Authors: Schaaf Lea , Schwab Matthias , Ulmer Christoph , Heine Simon , Mürdter Thomas E. , Schmid Jens O. , Sauer Georg , Aulitzky Walter E. , van der Kuip Heiko
Published: April 2023

Table of TaqMan Assays (Applied Biosystems) used in this study
Supplementary Table S1 from Expansion of a BDCA1+CD14+ Myeloid Cell Population in Melanoma Patients May Attenuate the Efficacy of Dendritic Cell Vaccines
Authors: Bakdash Ghaith , Buschow Sonja I. , Gorris Mark A.J. , Halilovic Altuna , Hato Stanleyson V. , Sköld Annette E. , Schreibelt Gerty , Sittig Simone P. , Torensma Ruurd , Duiveman-de Boer Tjitske , Schröder Christoph , Smits Evelien L. , Figdor Carl G. , de Vries I. Jolanda M.
Published: April 2023

A list of all molecules detected by antibody microarray (Multiplex analysis) with their UniPort entry name.
Supplementary Figures S1-S12 from Expansion of a BDCA1+CD14+ Myeloid Cell Population in Melanoma Patients May Attenuate the Efficacy of Dendritic Cell Vaccines
Authors: Bakdash Ghaith , Buschow Sonja I. , Gorris Mark A.J. , Halilovic Altuna , Hato Stanleyson V. , Sköld Annette E. , Schreibelt Gerty , Sittig Simone P. , Torensma Ruurd , Duiveman-de Boer Tjitske , Schröder Christoph , Smits Evelien L. , Figdor Carl G. , de Vries I. Jolanda M.
Published: April 2023

The gating strategy applied to isolate and determine the frequency of BDCA1+ DCs, BDCA1+ CD14+ cells, monocytes and MDSCs from PBMCS of melanoma patients or healthy donors by FACS (S1); The distribution of potentially "missed genes" over the RPKM value spectrum in all samples that underwent RNA sequencing (S2); A Venn diagram displaying the overlap between the four gene sets used in GSEA analysis: Mono high, infDC high, MoDC sig and BDCA1+ DC high (S3); The T cell suppressive capacity of BDCA1+ DCs, BDCA1+ CD14+ cells, monocytes and MDSCs (S4); Quantification of immunofluorescence stainings performed on sections of paraffin-embedded resection specimens of healthy and melanoma metastasized lymph nodes or healthy and melanoma metastasized colon (S5); Large view, showing multiple cells, of May-Grunwald/Giemsa-stained healthy donor-derived, FACS-sorted BDCA1+ DCs, BDCA1+CD14+ cells and monocytes (S6); GSEA enrichment plots (S7); BDCA1+ DCs, BDCA1+CD14+ cells and monocytes respond to TLR2 and TLR8 stimulation (S8); IL-12 levels determined in overnight supernatants of BDCA1+ DCs, BDCA1+ CD14+ cells and monocytes cultures following stimulation with pIC and R848 (S9); The T cell polarizing capacity of BDCA1+ DCs, BDCA1+ CD14+ cells and monocytes (S10); The effect of IL-10 on BDCA1+ CD14+ cell-induced T cell proliferation was determined by performing an MLR with allogenic naïve CD4+ T cells in the presence or absence of anit-IL-10 and anti-IL10 receptor or the matching isotype controls (S11); The suppressive capacity of BDCA1+ CD14+ cells is not reversed by PD-L1 blocking (S12).
Supplementary Figure 3 from Evolutionary Action Score of TP53 Coding Variants Is Predictive of Platinum Response in Head and Neck Cancer Patients
Authors: Osman Abdullah A. , Neskey David M. , Katsonis Panagiotis , Patel Ameeta A. , Ward Alexandra M. , Hsu Teng-Kuei , Hicks Stephanie C. , McDonald Thomas O. , Ow Thomas J. , Alves Marcus Ortega , Pickering Curtis R. , Skinner Heath D. , Zhao Mei , Sturgis Eric M. , Kies Merrill S. , El-Naggar Adel , Perrone Federica , Licitra Lisa , Bossi Paolo , Kimmel Marek , Frederick Mitchell J. , Lichtarge Olivier , Myers Jeffrey N.
Published: April 2023

Supplementary Figure 3: Effect of cisplatin therapy on tumor growth and survival in an orthotopic nude mouse model of oral tongue cancer harboring TP53 mutations presented as area under the growth curve (AUC).
Supplementary Tables S1-S6 from Bereavement Is Associated with an Increased Risk of HPV Infection and Cervical Cancer: An Epidemiological Study in Sweden
Authors: Lu Donghao , Sundström Karin , Sparén Pär , Fall Katja , Sjölander Arvid , Dillner Joakim , Helm Nathalie Ylitalo , Adami Hans-Olov , Valdimarsdóttir Unnur , Fang Fang
Published: April 2023

Supplementary Tables S1-S6: Table S1:Methodological and Descriptive Characteristics of Three Analyses on Abnormal Cytology, Cervical Cancer and HPV16 Infection. Tables S2:Bereavement and Cytology of Atypical, Low-Grade, and High-Grade Abnormalities, a Nested Case-Control Study in Sweden, 1969-2011. Table S3:Bereavement and Abnormal Cytology after Excluding Potentially Prevalent Cervical Cancer, a Nested Case-Control Study in Sweden, 1969-2011. Table S4:Bereavement and In Situ/Invasive Cervical Cancer, a Nested Case-Control Study in Sweden, 1969-2011. Table S5:Bereavement and HPV16 Infection, a Case-Control Study in Sweden, 1969-2002. Table S6:Bereavement and Lifestyle Factors.
Supplemental Table 1 from Jak1–STAT3 Signals Are Essential Effectors of the USP6/TRE17 Oncogene in Tumorigenesis
Authors: Quick Laura , Young Robert , Henrich Ian C. , Wang Xiaoke , Asmann Yan W. , Oliveira Andre M. , Chou Margaret M.
Published: April 2023

GEO Accession numbers
Supplementary materials and methods from S-nitrosylation of the Mitochondrial Chaperone TRAP1 Sensitizes Hepatocellular Carcinoma Cells to Inhibitors of Succinate Dehydrogenase
Authors: Rizza Salvatore , Montagna Costanza , Cardaci Simone , Maiani Emiliano , Di Giacomo Giuseppina , Sanchez-Quiles Virginia , Blagoev Blagoy , Rasola Andrea , De Zio Daniela , Stamler Jonathan S. , Cecconi Francesco , Filomeni Giuseppe
Published: April 2023

Supplementary materials and methods
Figures S1-S8 from p120 Catenin Suppresses Basal Epithelial Cell Extrusion in Invasive Pancreatic Neoplasia
Authors: Hendley Audrey M. , Wang Yue J. , Polireddy Kishore , Alsina Janivette , Ahmed Ishrat , Lafaro Kelly J. , Zhang Hao , Roy Nilotpal , Savidge Samuel G. , Cao Yanna , Hebrok Matthias , Maitra Anirban , Reynolds Albert B. , Goggins Michael , Younes Mamoun , Iacobuzio-Donahue Christine A. , Leach Steven D. , Bailey Jennifer M.
Published: April 2023

This file contains Figures S1-S8. Figure S1 shows examples of representative images used to score p120 catenin expression in human TMAs and pancreatic histology of mice with loss of p120 catenin. Figure S2 depicts recruitment of inflammation and a unique stromal composition in KCiMist1; p120f/wt and KCiMist1; p120f/f pancreata. Figure S3 shows that prominent basal epithelial cell extrusion in pancreata of KCiMist1; p120f/f mice is not associated with incomplete EMT. Figure S4 shows that pancreatic loss of p120 catenin in a mouse model of acute pancreatitis delays regeneration and results in significant recruitment of inflammation, observations which are mediated at least in part through activation of NF-kB. Figure S5 illustrates that a subset of epithelial cells extruding apically in KCiMist1; p120wt/wt, KCiMist1; p120f/wt, and KCiMist1; p120f/f pancreata express cleaved Caspase-3, while epithelial cells extruding basally do not express cleaved Caspase-3. Figure S6 depicts an analysis of chromosome content using Feulgen stain, which showed abnormal DNA content and aneuploidy in a subset of basally extruded epithelial cells in KCiMist1; p120f/f pancreata. Figure S7 shows mislocalized p120 catenin expression in greater than 95% isolated epithelial cells in human PDA. Figure S8 illustrates IPA results of microarray performed on GFP+ pancreatic cells of KCiMist1G; p120wt/wt and KCiMist1G; p120f/f mice as well as IHC of select targets identified from IPA results.
Figure S4 from S-nitrosylation of the Mitochondrial Chaperone TRAP1 Sensitizes Hepatocellular Carcinoma Cells to Inhibitors of Succinate Dehydrogenase
Authors: Rizza Salvatore , Montagna Costanza , Cardaci Simone , Maiani Emiliano , Di Giacomo Giuseppina , Sanchez-Quiles Virginia , Blagoev Blagoy , Rasola Andrea , De Zio Daniela , Stamler Jonathan S. , Cecconi Francesco , Filomeni Giuseppe
Published: April 2023

α-TOS and SDH-targeting mitocans induce necroptosis by a PARP1-RIP1-mediated signaling cascade.
Supplementary figures S1-S8 from Deletion of Interstitial Genes between TMPRSS2 and ERG Promotes Prostate Cancer Progression
Authors: Linn Douglas E. , Penney Kathryn L. , Bronson Roderick T. , Mucci Lorelei A. , Li Zhe
Published: April 2023

Supplementary Figures: Figure S1. Syntenic regions between human chromosome 21q and mouse chromosome 8q. Figure S2. IHC staining of prostate lesions in Pb-Cre;T-ERG;PtenL/L and Pb-Cre;T-3Mb-Erg;PtenL/L mouse models. Figure S3. Overview of mouse prostate tissues microdissected for genomic DNA PCR analysis and microarray expression profiling. Figure S4. Cre-mediated deletion of the interstitial region in T-delta-Erg/Pten-null lesions. Figure S5. Additional data showing the EMT phenotype in prostate lesions developed in Pb-Cre;T-3Mb-Erg;PtenL/L mice. Figure S6. Expression analysis of AR target genes in T-âˆ†-Erg/Pten-null and Ras/Pten prostate tumors. Figure S7. Expression analysis of select ETS factor genes in prostate tissues. Figure S8. Expression analysis of interstitial genes in T-delta-Erg/Pten-null versus Pten-null HG-PIN lesions.
Supporting data Fig 3A, 3B, 4D, S6 from Preclinical Anticancer Efficacy of BET Bromodomain Inhibitors Is Determined by the Apoptotic Response
Authors: Conery Andrew R. , Centore Richard C. , Spillane Kerry L. , Follmer Nicole E. , Bommi-Reddy Archana , Hatton Charlie , Bryant Barbara M. , Greninger Patricia , Amzallag Arnaud , Benes Cyril H. , Mertz Jennifer A. , Sims Robert J.
Published: April 2023

This file contains the following: source data for the graphs shown in Figure 3A (GI50, Z sub G1, and Z G1 increase); source data for the heatmap and graph shown in Figure 3B (expression fold change, log2 fold change, and gene score); qPCR source data for the heatmap and graph in Figure 4D; measurements of Western blotting band intensity from Figure S6.
Figure S8 from Heme Oxygenase-1 Controls an HDAC4-miR-206 Pathway of Oxidative Stress in Rhabdomyosarcoma
Authors: Ciesla Maciej , Marona Paulina , Kozakowska Magdalena , Jez Mateusz , Seczynska Marta , Loboda Agnieszka , Bukowska-Strakova Karolina , Szade Agata , Walawender Magdalena , Kusior Magdalena , Stepniewski Jacek , Szade Krzysztof , Krist Bart , Yagensky Oleksandr , Urbanik Aleksandra , Kazanowska Bernarda , Dulak Jozef , Jozkowicz Alicja
Published: April 2023

Effect of co-culture of SMS-CTR eRMS cell line and mesenchymal stromal cells (MSC) with normal HO-1 expression (MSC WT) or lacking HO-1 (MSC HO-1 KO).
Supplementary Materials and Methods from Preclinical Anticancer Efficacy of BET Bromodomain Inhibitors Is Determined by the Apoptotic Response
Authors: Conery Andrew R. , Centore Richard C. , Spillane Kerry L. , Follmer Nicole E. , Bommi-Reddy Archana , Hatton Charlie , Bryant Barbara M. , Greninger Patricia , Amzallag Arnaud , Benes Cyril H. , Mertz Jennifer A. , Sims Robert J.
Published: April 2023

This file contains additional information regarding the methods used in the manuscript, including shRNA sequences, peptide and antibody information, and details about analysis methods.
Figure S7 from Heme Oxygenase-1 Controls an HDAC4-miR-206 Pathway of Oxidative Stress in Rhabdomyosarcoma
Authors: Ciesla Maciej , Marona Paulina , Kozakowska Magdalena , Jez Mateusz , Seczynska Marta , Loboda Agnieszka , Bukowska-Strakova Karolina , Szade Agata , Walawender Magdalena , Kusior Magdalena , Stepniewski Jacek , Szade Krzysztof , Krist Bart , Yagensky Oleksandr , Urbanik Aleksandra , Kazanowska Bernarda , Dulak Jozef , Jozkowicz Alicja
Published: April 2023

Growth of tumors formed by CW9019-Luc aRMS cells transplanted subcutaneously to athymic nude mice.
Figure S4 from Heme Oxygenase-1 Controls an HDAC4-miR-206 Pathway of Oxidative Stress in Rhabdomyosarcoma
Authors: Ciesla Maciej , Marona Paulina , Kozakowska Magdalena , Jez Mateusz , Seczynska Marta , Loboda Agnieszka , Bukowska-Strakova Karolina , Szade Agata , Walawender Magdalena , Kusior Magdalena , Stepniewski Jacek , Szade Krzysztof , Krist Bart , Yagensky Oleksandr , Urbanik Aleksandra , Kazanowska Bernarda , Dulak Jozef , Jozkowicz Alicja
Published: April 2023

Expression of genes influencing the myoD activity in SMS-CTR eRMS (SMS) and CW9019 aRMS (CW) cell lines cultured in growth medium (GM).
Supplementary Figure 2 from Breast Tumor Kinase (Brk/PTK6) Is Induced by HIF, Glucocorticoid Receptor, and PELP1-Mediated Stress Signaling in Triple-Negative Breast Cancer
Authors: Regan Anderson Tarah M. , Ma Shi Hong , Raj Ganesh V. , Cidlowski John A. , Helle Taylor M. , Knutson Todd P. , Krutilina Raisa I. , Seagroves Tiffany N. , Lange Carol A.
Published: April 2023

DUSP1 and GILZ regulation and GR recruitment in MDA-MB-231 shControl and HIF1/2-shRNA cells.
Supplementary information from Tumor Cell Invasion Can Be Blocked by Modulators of Collagen Fibril Alignment That Control Assembly of the Extracellular Matrix
Authors: Grossman Moran , Ben-Chetrit Nir , Zhuravlev Alina , Afik Ran , Bassat Elad , Solomonov Inna , Yarden Yosef , Sagi Irit
Published: April 2023

This file contains: Fig S1-S10 Table S1-S2 Supplementary materials and methods
Supplementary Mov. 1 from Tumor Cell Invasion Can Be Blocked by Modulators of Collagen Fibril Alignment That Control Assembly of the Extracellular Matrix
Authors: Grossman Moran , Ben-Chetrit Nir , Zhuravlev Alina , Afik Ran , Bassat Elad , Solomonov Inna , Yarden Yosef , Sagi Irit
Published: April 2023

Supplementary Mov. 1 from Tumor Cell Invasion Can Be Blocked by Modulators of Collagen Fibril Alignment That Control Assembly of the Extracellular Matrix
Supplemental dataset 1 from Cancer Differentiating Agent Hexamethylene Bisacetamide Inhibits BET Bromodomain Proteins
Authors: Nilsson Lisa M. , Green Lydia C. , Muralidharan Somsundar Veppil , Demir Dağsu , Welin Martin , Bhadury Joydeep , Logan Derek T. , Walse Björn , Nilsson Jonas A.
Published: April 2023

Microarray data
Figure S7 from miR-214 and miR-148b Targeting Inhibits Dissemination of Melanoma and Breast Cancer
Authors: Orso Francesca , Quirico Lorena , Virga Federico , Penna Elisa , Dettori Daniela , Cimino Daniela , Coppo Roberto , Grassi Elena , Elia Angela Rita , Brusa Davide , Deaglio Silvia , Brizzi Maria Felice , Stadler Michael B. , Provero Paolo , Caselle Michele , Taverna Daniela
Published: April 2023

miR-148b reduces liver and lung metastasis formation
Supplemental Figures from CRM1 Inhibition Promotes Cytotoxicity in Ewing Sarcoma Cells by Repressing EWS-FLI1–Dependent IGF-1 Signaling
Authors: Sun Haibo , Lin De-Chen , Cao Qi , Guo Xiao , Marijon Helene , Zhao Zhiqiang , Gery Sigal , Xu Liang , Yang Henry , Pang Brendan , Lee Victor Kwan Min , Lim Huey Jin , Doan Ngan , Said Jonathan W. , Chu Peiguo , Mayakonda Anand , Thomas Tom , Forscher Charles , Baloglu Erkan , Shacham Sharon , Rajalingam Raja , Koeffler H. Phillip
Published: April 2023

Fig. S1. Expression of CRM1 in EWS cell lines. Fig. S2. Treatment of KPT-330 caused tolerable cytotoxic effect in normal CD34+ cells. Fig. S3.p53 is regulated to drive KPT-330 dependent anti-proliferation effect in wildtype EWS cell lines. Fig. S4. KPT-330 has modest effect on regulation of other fusion proteins. Fig. S5. Combination of KPT-330 and Crizotinib synergistically inhibited cell proliferation in EWS cell lines. Fig. S6. Venn diagram of genes co-downregulated by KPT-330 compared with genes downregulated by EWS-FLI1.
Supplemental Figure legends from CRM1 Inhibition Promotes Cytotoxicity in Ewing Sarcoma Cells by Repressing EWS-FLI1–Dependent IGF-1 Signaling
Authors: Sun Haibo , Lin De-Chen , Cao Qi , Guo Xiao , Marijon Helene , Zhao Zhiqiang , Gery Sigal , Xu Liang , Yang Henry , Pang Brendan , Lee Victor Kwan Min , Lim Huey Jin , Doan Ngan , Said Jonathan W. , Chu Peiguo , Mayakonda Anand , Thomas Tom , Forscher Charles , Baloglu Erkan , Shacham Sharon , Rajalingam Raja , Koeffler H. Phillip
Published: April 2023

Figure legends for supplemental figures S1-S6.
Figure S3 from miR-214 and miR-148b Targeting Inhibits Dissemination of Melanoma and Breast Cancer
Authors: Orso Francesca , Quirico Lorena , Virga Federico , Penna Elisa , Dettori Daniela , Cimino Daniela , Coppo Roberto , Grassi Elena , Elia Angela Rita , Brusa Davide , Deaglio Silvia , Brizzi Maria Felice , Stadler Michael B. , Provero Paolo , Caselle Michele , Taverna Daniela
Published: April 2023

miR-214 expression modulations in normal or tumor breast cells
Figure S12 from miR-214 and miR-148b Targeting Inhibits Dissemination of Melanoma and Breast Cancer
Authors: Orso Francesca , Quirico Lorena , Virga Federico , Penna Elisa , Dettori Daniela , Cimino Daniela , Coppo Roberto , Grassi Elena , Elia Angela Rita , Brusa Davide , Deaglio Silvia , Brizzi Maria Felice , Stadler Michael B. , Provero Paolo , Caselle Michele , Taverna Daniela
Published: April 2023

ITGA5 and ALCAM control transendothelial migration in vitro and extravasation in mice
Supplementary Table 3 from Gender-Specific Molecular and Clinical Features Underlie Malignant Pleural Mesothelioma
Authors: De Rienzo Assunta , Archer Michael A. , Yeap Beow Y. , Dao Nhien , Sciaranghella Daniele , Sideris Antonios C. , Zheng Yifan , Holman Alexander G. , Wang Yaoyu E. , Dal Cin Paola S. , Fletcher Jonathan A. , Rubio Renee , Croft Larry , Quackenbush John , Sugarbaker Peter E. , Munir Kiara J. , Battilana Jesse R. , Gustafson Corinne E. , Chirieac Lucian R. , Ching Soo Meng , Wong James , Tay Liang Chung , Rudd Stephen , Hercus Robert , Sugarbaker David J. , Richards William G. , Bueno Raphael
Published: April 2023

Expression levels for BAP1, NF2, TP53, MYH9, MYH6, MYH10, PIK3C2A, RHOA, and TNFRSF1A detected by Affymetrix® Human Gene 1.1 ST Array in 151 MPM
Supplementary Figures S1-S5 from Transcriptome Analysis of Recurrently Deregulated Genes across Multiple Cancers Identifies New Pan-Cancer Biomarkers
Authors: Kaczkowski Bogumil , Tanaka Yuji , Kawaji Hideya , Sandelin Albin , Andersson Robin , Itoh Masayoshi , Lassmann Timo , Hayashizaki Yoshihide , Carninci Piero , Forrest Alistair R.R.
Published: April 2023

The expression changes of cancer related genes that were differentially expressed in FANTOM5 cancer cell lines (S1); Heatmaps showing the spectral count data corresponding to protein levels of selected genes in 90 colorectal cancers and 30 normal samples generated by Zhang et al (S2); Pan-cancer long non-coding RNAs and neighboring cancer associated genes (S3); ChIA-pet data show pan-cancer enhancers are physically associated with genes implicated in cancer (S4); The correlation between expression fold changes and the frequency of overlapping repetitive element (S5).
Supplementary Table S2 from Mutational Landscape and Antiproliferative Functions of ELF Transcription Factors in Human Cancer
Authors: Ando Mizuo , Kawazu Masahito , Ueno Toshihide , Koinuma Daizo , Ando Koji , Koya Junji , Kataoka Keisuke , Yasuda Takahiko , Yamaguchi Hiroyuki , Fukumura Kazutaka , Yamato Azusa , Soda Manabu , Sai Eirin , Yamashita Yoshihiro , Asakage Takahiro , Miyazaki Yasushi , Kurokawa Mineo , Miyazono Kohei , Nimer Stephen D. , Yamasoba Tatsuya , Mano Hiroyuki
Published: April 2023

Enriched GO terms for genes adjacent to ELF4 binding regions
Supplementary Movie 1 from Metabolic Stress-Induced Phosphorylation of KAP1 Ser473 Blocks Mitochondrial Fusion in Breast Cancer Cells
Authors: Cheng Chun-Ting , Kuo Ching-Ying , Ouyang Ching , Li Chien-Feng , Chung Yiyin , Chan David C. , Kung Hsing-Jien , Ann David K.
Published: April 2023

Movie 1. Time-lapse imaging of MDA-MB-231 cells in complete medium.
Supplementary Figure S14 from Mutational Landscape and Antiproliferative Functions of ELF Transcription Factors in Human Cancer
Authors: Ando Mizuo , Kawazu Masahito , Ueno Toshihide , Koinuma Daizo , Ando Koji , Koya Junji , Kataoka Keisuke , Yasuda Takahiko , Yamaguchi Hiroyuki , Fukumura Kazutaka , Yamato Azusa , Soda Manabu , Sai Eirin , Yamashita Yoshihiro , Asakage Takahiro , Miyazaki Yasushi , Kurokawa Mineo , Miyazono Kohei , Nimer Stephen D. , Yamasoba Tatsuya , Mano Hiroyuki
Published: April 2023

ELF4-mediated induction of DLX3 and HRK mRNA in various cancer cell lines
Supplementary Figure S7 from STAT3/IRF1 Pathway Activation Sensitizes Cervical Cancer Cells to Chemotherapeutic Drugs
Authors: Walch-Rückheim Barbara , Pahne-Zeppenfeld Jennifer , Fischbach Jil , Wickenhauser Claudia , Horn Lars Christian , Tharun Lars , Büttner Reinhard , Mallmann Peter , Stern Peter , Kim Yoo-Jin , Bohle Rainer Maria , Rübe Christian , Ströder Russalina , Juhasz-Böss Ingolf , Solomayer Erich-Franz , Smola Sigrun
Published: April 2023

1.5 x 105 HeLa cells/6-well were either left untransfected or were transfected with (A) 0 µg, 0.025 µg or 0.1 µg of pCMV-Flag2-IRF1 or (B) 0 µg, 0.6 µg or 0.8 µg of pCMV-Flag2-IRF2.
Supplementary Figure S6 from STAT3/IRF1 Pathway Activation Sensitizes Cervical Cancer Cells to Chemotherapeutic Drugs
Authors: Walch-Rückheim Barbara , Pahne-Zeppenfeld Jennifer , Fischbach Jil , Wickenhauser Claudia , Horn Lars Christian , Tharun Lars , Büttner Reinhard , Mallmann Peter , Stern Peter , Kim Yoo-Jin , Bohle Rainer Maria , Rübe Christian , Ströder Russalina , Juhasz-Böss Ingolf , Solomayer Erich-Franz , Smola Sigrun
Published: April 2023

IRF1 is not induced by OSM or IL-6/sgp80 stimulation in NECK.
Supplementary Methods from Eva1 Maintains the Stem-like Character of Glioblastoma-Initiating Cells by Activating the Noncanonical NF-κB Signaling Pathway
Authors: Ohtsu Naoki , Nakatani Yuka , Yamashita Daisuke , Ohue Shiro , Ohnishi Takanori , Kondo Toru
Published: April 2023

Description of additional methods and procedures used in the study.
Supplementary Figure 1 from The CDK9 Inhibitor Dinaciclib Exerts Potent Apoptotic and Antitumor Effects in Preclinical Models of MLL-Rearranged Acute Myeloid Leukemia
Authors: Baker Adele , Gregory Gareth P. , Verbrugge Inge , Kats Lev , Hilton Joshua J. , Vidacs Eva , Lee Erwin M. , Lock Richard B. , Zuber Johannes , Shortt Jake , Johnstone Ricky W.
Published: April 2023

Supplementary Figure 1. In vitro combination studies of dinaciclib and other therapeutics against MLL-AF9;NRASG12D leukemia.
Supplementary Figure S5 from Eva1 Maintains the Stem-like Character of Glioblastoma-Initiating Cells by Activating the Noncanonical NF-κB Signaling Pathway
Authors: Ohtsu Naoki , Nakatani Yuka , Yamashita Daisuke , Ohue Shiro , Ohnishi Takanori , Kondo Toru
Published: April 2023

Microarray analysis of gene expression in NSCL61 and eva1sh-expressing NSCL61 cells.
Supplementary Fig 7 from Neuropilin-2 Regulates Endosome Maturation and EGFR Trafficking to Support Cancer Cell Pathobiology
Authors: Dutta Samikshan , Roy Sohini , Polavaram Navatha S. , Stanton Marissa J. , Zhang Heyu , Bhola Tanvi , Hönscheid Pia , Donohue Terrence M. , Band Hamid , Batra Surinder K. , Muders Michael H. , Datta Kaustubh
Published: April 2023

Depletion of NRP2 axis affect EGFR endocytosis
Supplemental Figures S1-S7 from Heightening Energetic Stress Selectively Targets LKB1-Deficient Non–Small Cell Lung Cancers
Authors: Momcilovic Milica , McMickle Robert , Abt Evan , Seki Atsuko , Simko Sarah A. , Magyar Clara , Stout David B. , Fishbein Michael C. , Walser Tonya C. , Dubinett Steven M. , Shackelford David B.
Published: April 2023

Treatment of LKB1 mutant and LKB1 wildtype NSCLC lines with phenformin, MLN0128 or combination leads to loss of cellular ATP (S1); Metabolite analysis of NSCLC human cell line expressing dox inducible 4E-BP1 4Ala protein and control vector (S2); Biomarker analysis of normal lung tissue in response to drug treatments (S3); Treatment of Kluc mice with phenformin, MLN0128 or combination does not result in therapeutic benefit (S4); Tumor burden does not decrease in response to phenformin, MLN0128 or combination therapy in Kluc mice (S5); Biomarker analysis in tumors treated with phenformin, MLN0128 or combination (S6); Biomarker analysis of mouse tumors lysates, human NSCLC cell lines and mouse embryonic fibroblasts (S7).
Supplementary Methods from Chromogranin A Is Preferentially Cleaved into Proangiogenic Peptides in the Bone Marrow of Multiple Myeloma Patients
Authors: Bianco Mimma , Gasparri Anna Maria , Colombo Barbara , Curnis Flavio , Girlanda Stefania , Ponzoni Maurilio , Bertilaccio Maria Teresa Sabrina , Calcinotto Arianna , Sacchi Angelina , Ferrero Elisabetta , Ferrarini Marina , Chesi Marta , Bergsagel P. Leif , Bellone Matteo , Tonon Giovanni , Ciceri Fabio , Marcatti Magda , Caligaris-Cappio Federico , Corti Angelo
Published: April 2023

Description of additional methods and procedures used in the study.
SUPPLEMENTARY FIGURE 2. SSTN inhibition of IGF1R in myeloma inhibits adhesion-independent cell survival. from Syndecan-1 (CD138) Suppresses Apoptosis in Multiple Myeloma by Activating IGF1 Receptor: Prevention by SynstatinIGF1R Inhibits Tumor Growth
Authors: Beauvais DeannaLee M. , Jung Oisun , Yang Yang , Sanderson Ralph D. , Rapraeger Alan C.
Published: April 2023

A. CAG cells are plated for 2 hr on VN or FN in the presence or absence of 10 μg/mL VLA-4 (P1H4) or 30 μg/mL αvβ5 (P1F6) integrin blocking antibodies; B. CAG myeloma cells grown for 72 hr in the presence of 10 μg/mL VLA-4 (P1H4) or 30 μg/mL αvβ5 (P1F6) integrin blocking antibodies, 10 μM AG538, or 30 μM SSTNIGF1R are quantified and graphed relative to no treatment (set to 1.0). Error bars = SEM.
Supplemental figure from Exercise and Prognosis on the Basis of Clinicopathologic and Molecular Features in Early-Stage Breast Cancer: The LACE and Pathways Studies
Authors: Jones Lee W. , Kwan Marilyn L. , Weltzien Erin , Chandarlapaty Sarat , Sternfeld Barbara , Sweeney Carol , Bernard Philip S. , Castillo Adrienne , Habel Laurel A. , Kroenke Candyce H. , Langholz Bryan M. , Queensberry Charles P. , Dang Chau , Weigelt Britta , Kushi Lawrence H. , Caan Bette J.
Published: April 2023

Log hazard smoothing spline plot.
Supplementary Figure S1 from Radioprotection of IDH1-Mutated Cancer Cells by the IDH1-Mutant Inhibitor AGI-5198
Authors: Molenaar Remco J. , Botman Dennis , Smits Myrthe A. , Hira Vashendriya V. , van Lith Sanne A. , Stap Jan , Henneman Peter , Khurshed Mohammed , Lenting Krissie , Mul Adri N. , Dimitrakopoulou Dionysia , van Drunen Cornelis M. , Hoebe Ron A. , Radivoyevitch Tomas , Wilmink Johanna W. , Maciejewski Jaroslaw P. , Vandertop W. Peter , Leenders William P. , Bleeker Fonnet E. , van Noorden Cornelis J.
Published: April 2023

IDH1R132H mutations reduce IDH-mediated NADPH production and radioresistance.
Supplementary Table S3 from Deep Sequencing Reveals a Novel miR-22 Regulatory Network with Therapeutic Potential in Rhabdomyosarcoma
Authors: Bersani Francesca , Lingua Marcello Francesco , Morena Deborah , Foglizzo Valentina , Miretti Silvia , Lanzetti Letizia , Carrà Giovanna , Morotti Alessandro , Ala Ugo , Provero Paolo , Chiarle Roberto , Singer Samuel , Ladanyi Marc , Tuschl Thomas , Ponzetto Carola , Taulli Riccardo
Published: April 2023

List of miR-22 predicted targets.
SUPPLEMENTARY figure 4 from IGFBP2 Activates the NF-κB Pathway to Drive Epithelial–Mesenchymal Transition and Invasive Character in Pancreatic Ductal Adenocarcinoma
Authors: Gao Song , Sun Yan , Zhang Xuebin , Hu Limei , Liu Yuexin , Chua Corrine Yingxuan , Phillips Lynette M. , Ren He , Fleming Jason B. , Wang Huamin , Chiao Paul J. , Hao Jihui , Zhang Wei
Published: April 2023

The role of Akt in IGFBP2-mediated IKKβ activation.
Supplementary Materials and Methods from Deep Sequencing Reveals a Novel miR-22 Regulatory Network with Therapeutic Potential in Rhabdomyosarcoma
Authors: Bersani Francesca , Lingua Marcello Francesco , Morena Deborah , Foglizzo Valentina , Miretti Silvia , Lanzetti Letizia , Carrà Giovanna , Morotti Alessandro , Ala Ugo , Provero Paolo , Chiarle Roberto , Singer Samuel , Ladanyi Marc , Tuschl Thomas , Ponzetto Carola , Taulli Riccardo
Published: April 2023

Detailed version of the Materials and Methods and list of oligonucleotides and antibodies used.
Supplementary Table S6 from PROTOCADHERIN 7 Acts through SET and PP2A to Potentiate MAPK Signaling by EGFR and KRAS during Lung Tumorigenesis
Authors: Zhou Xiaorong , Updegraff Barrett L. , Guo Yabin , Peyton Michael , Girard Luc , Larsen Jill E. , Xie Xian-Jin , Zhou Yunyun , Hwang Tae Hyun , Xie Yang , Rodriguez-Canales Jaime , Villalobos Pamela , Behrens Carmen , Wistuba Ignacio I. , Minna John D. , O'Donnell Kathryn A.
Published: April 2023

RNA-seq results from HBEC-shp53 and HBEC-shp53-PCDH7 cells
Supplementary Figures 1-9 from Targeting FBW7 as a Strategy to Overcome Resistance to Targeted Therapy in Non–Small Cell Lung Cancer
Authors: Ye Mingxiang , Zhang Yong , Zhang Xinxin , Zhang Jianbin , Jing Pengyu , Cao Liang , Li Nan , Li Xia , Yao Libo , Zhang Jian
Published: April 2023

This supplementary figures showed the function of FBW7 in determining the sensitivity to TKIs in NSCLC and highlighted the biochemical pathways of MCL-1 proteolysis.
Supplementary Table S2 from The NSL Chromatin-Modifying Complex Subunit KANSL2 Regulates Cancer Stem–like Properties in Glioblastoma That Contribute to Tumorigenesis
Authors: Ferreyra Solari Nazarena E. , Belforte Fiorella S. , Canedo Lucía , Videla-Richardson Guillermo A. , Espinosa Joaquín M. , Rossi Mario , Serna Eva , Riudavets Miguel A. , Martinetto Horacio , Sevlever Gustavo , Perez-Castro Carolina
Published: April 2023

Primers sequences.
Supplementary Table S1 from The NSL Chromatin-Modifying Complex Subunit KANSL2 Regulates Cancer Stem–like Properties in Glioblastoma That Contribute to Tumorigenesis
Authors: Ferreyra Solari Nazarena E. , Belforte Fiorella S. , Canedo Lucía , Videla-Richardson Guillermo A. , Espinosa Joaquín M. , Rossi Mario , Serna Eva , Riudavets Miguel A. , Martinetto Horacio , Sevlever Gustavo , Perez-Castro Carolina
Published: April 2023

Fold change expression of positive and negative controls and genes of interest across all 52 glioma samples (high (IDH1-) vs. low (IDH1+) tumor grade)
Fig. S1 from TSC2 Deficiency Unmasks a Novel Necrosis Pathway That Is Suppressed by the RIP1/RIP3/MLKL Signaling Cascade
Authors: Filipczak Piotr T. , Thomas Cindy , Chen Wenshu , Salzman Andrew , McDonald Jacob D. , Lin Yong , Belinsky Steven A.
Published: April 2023

Pan-caspase inhibitor zVAD does not protect from cell death induced with BSO, auranofin, Nec-1 and NSA combinations
Supplemental Figure S2 from The NSL Chromatin-Modifying Complex Subunit KANSL2 Regulates Cancer Stem–like Properties in Glioblastoma That Contribute to Tumorigenesis
Authors: Ferreyra Solari Nazarena E. , Belforte Fiorella S. , Canedo Lucía , Videla-Richardson Guillermo A. , Espinosa Joaquín M. , Rossi Mario , Serna Eva , Riudavets Miguel A. , Martinetto Horacio , Sevlever Gustavo , Perez-Castro Carolina
Published: April 2023

Figure S2. KANSL2 down regulation inhibits GBM derived tumor growth.
Supplementary Table 6 from Improving the Performance of Somatic Mutation Identification by Recovering Circulating Tumor DNA Mutations
Authors: Fu Yu , Jovelet Cécile , Filleron Thomas , Pedrero Marion , Motté Nelly , Boursin Yannick , Luo Yufei , Massard Christophe , Campone Mario , Levy Christelle , Diéras Véronique , Bachelot Thomas , Garrabey Julie , Soria Jean-Charles , Lacroix Ludovic , André Fabrice , Lefebvre Celine
Published: April 2023

Clinical information for the 93 breast cancer and 60 pan cancer metastatic patients.
Supplementary Table 13 from Improving the Performance of Somatic Mutation Identification by Recovering Circulating Tumor DNA Mutations
Authors: Fu Yu , Jovelet Cécile , Filleron Thomas , Pedrero Marion , Motté Nelly , Boursin Yannick , Luo Yufei , Massard Christophe , Campone Mario , Levy Christelle , Diéras Véronique , Bachelot Thomas , Garrabey Julie , Soria Jean-Charles , Lacroix Ludovic , André Fabrice , Lefebvre Celine
Published: April 2023

ctDNA mutations identified by cmDetect in the 60 pan cancer metastatic samples.
Figures S3-S4 from Hypoxia-Induced Downregulation of DUSP-2 Phosphatase Drives Colon Cancer Stemness
Authors: Hou Pei-Chi , Li Yo-Hua , Lin Shih-Chieh , Lin Shau-Chieh , Lee Jenq-Chang , Lin Bo-Wen , Liou Jing-Ping , Chang Jang-Yang , Kuo Ching-Chuan , Liu Yi-Min , Sun H. Sunny , Tsai Shaw-Jenq
Published: April 2023

Figure S3: PGE2 mediates loss-of-DUSP2-induced cancer stemness. Figure S4: Hypoxia-induced COX-2 expression is mediated by downregulation of DUSP2.
Figure S7 from Hypoxia-Induced Downregulation of DUSP-2 Phosphatase Drives Colon Cancer Stemness
Authors: Hou Pei-Chi , Li Yo-Hua , Lin Shih-Chieh , Lin Shau-Chieh , Lee Jenq-Chang , Lin Bo-Wen , Liou Jing-Ping , Chang Jang-Yang , Kuo Ching-Chuan , Liu Yi-Min , Sun H. Sunny , Tsai Shaw-Jenq
Published: April 2023

HDACi inhibits tumor growth and drug resistance
Supplementary Materials and Methods from Mesothelial Cells Create a Novel Tissue Niche That Facilitates Gastric Cancer Invasion
Authors: Tanaka Masamitsu , Kuriyama Sei , Itoh Go , Maeda Daichi , Goto Akiteru , Tamiya Yutaro , Yanagihara Kazuyoshi , Yashiro Masakazu , Aiba Namiko
Published: April 2023

Materials and Methods not included in the text
Figure S6 from Hypoxia-Induced Downregulation of DUSP-2 Phosphatase Drives Colon Cancer Stemness
Authors: Hou Pei-Chi , Li Yo-Hua , Lin Shih-Chieh , Lin Shau-Chieh , Lee Jenq-Chang , Lin Bo-Wen , Liou Jing-Ping , Chang Jang-Yang , Kuo Ching-Chuan , Liu Yi-Min , Sun H. Sunny , Tsai Shaw-Jenq
Published: April 2023

HDACi abolished hypoxia-induced cancer malignancy
Supplementary Figure 2 from Circulating Biomarkers of Tryptophan and the Kynurenine Pathway and Lung Cancer Risk
Authors: Chuang Shu-Chun , Fanidi Anouar , Ueland Per Magne , Relton Caroline , Midttun Øivind , Vollset Stein Emil , Gunter Marc J. , Seckl Michael J. , Travis Ruth C. , Wareham Nicholas , Trichopoulou Antonia , Lagiou Pagona , Trichopoulos Dimitrios , Peeters Petra H.M. , Bueno-de-Mesquita H. Bas , Boeing Heiner , Wientzek Angelika , Kuehn Tilman , Kaaks Rudolf , Tumino Rosario , Agnoli Claudia , Palli Domenico , Naccarati Alessio , Aicua Eva Ardanaz , Sánchez María-José , Quirós José Ramón , Chirlaque María-Dolores , Agudo Antonio , Johansson Mikael , Grankvist Kjell , Boutron-Ruault Marie-Christine , Clavel-Chapelon Françoise , Fagherazzi Guy , Weiderpass Elisabete , Riboli Elio , Brennan Paul J. , Vineis Paolo , Johansson Mattias
Published: April 2023

PDF file - 90K, Linear regression for circulating Tryptophan, Kynurenine and Kynurenine/tryptophan ratio in relation to food groups, lifestyle factors and other circulating biomarkers of a nested case-control study in the EPIC cohort. Ratios of circulating concentrations with 95% Confidence Intervals (CI) were calculated as 2 raised to the power of the beta estimates from linear regression models with log2-circulating concentrations as response.
Characteristics of studies included in meta-analysis of prior autoimmune disease and subsequent risk of myeloma from Prior Autoimmune Disease and Risk of Monoclonal Gammopathy of Undetermined Significance and Multiple Myeloma: A Systematic Review
Authors: McShane Charlene M. , Murray Liam J. , Landgren Ola , O'Rorke Michael A. , Korde Neha , Kunzmann Andrew T. , Ismail Mohammad Roshidi , Anderson Lesley A.
Published: April 2023

Summary characteristics of studies included within meta-analysis of autoimmune disease and subsequent risk of myeloma
Supplemental tables from Impact of Postdiagnosis Smoking on Long-term Survival of Cancer Patients: The Shanghai Cohort Study
Authors: Tao Li , Wang Renwei , Gao Yu-Tang , Yuan Jian-Min
Published: April 2023

Supplemental table 1. Characteristics for eligible cancer patients who were current smokers at diagnosis, by smoking status after cancer diagnosis, the Shanghai Cohort Study 1986-2010 Supplemental table 2. Characteristics for cancer patients who had eligible post-diagnosis information on smoking status, by smoking status before cancer diagnosis, the Shanghai Cohort Study 1986-2010
Supplementary Table 1 from Validation Study of Genes with Hypermethylated Promoter Regions Associated with Prostate Cancer Recurrence
Authors: Stott-Miller Marni , Zhao Shanshan , Wright Jonathan L. , Kolb Suzanne , Bibikova Marina , Klotzle Brandy , Ostrander Elaine A. , Fan Jian-Bing , Feng Ziding , Stanford Janet L.
Published: April 2023

PDF file - 57K, Genes with over 50% of the 5' region CpG sites having higher methylation in tumor tissue from prostate cancer patients with recurrence versus no recurrence.
Supplementary Tables 1-3 from Body Mass Index, Physical Activity, and Serum Markers of Inflammation, Immunity, and Insulin Resistance
Authors: Kitahara Cari M. , Trabert Britton , Katki Hormuzd A. , Chaturvedi Anil K. , Kemp Troy J. , Pinto Ligia A. , Moore Steven C. , Purdue Mark P. , Wentzensen Nicolas , Hildesheim Allan , Shiels Meredith S.
Published: April 2023

Supplementary Tables 1-3. Supplementary Table 1 - a) Correlations between selectb serum inflammation markers among lung cancer controls. b) Correlations between select and serum inflammation markers among NHL controls. c) Correlations between selectb serum inflammation markers among ovarian cancer controls. Supplementary Table 2. Odds ratios (ORs)a and 95% confidence intervals (CIs) for selectb circulating inflammation markers and body mass index. Supplementary Table 3. Odds ratios (ORs)a and 95% confidence intervals (CIs) for select circulating inflammation markers and body mass index (per 5-kg/m2) by case-control study
Supplementary Figure S1 from Inflammatory Markers of CRP, IL6, TNFα, and Soluble TNFR2 and the Risk of Ovarian Cancer: A Meta-analysis of Prospective Studies
Authors: Zeng Fangfang , Wei Huishan , Yeoh Engkiong , Zhang Zheqing , Ren Ze-Fang , Colditz Graham A. , Tworoger Shelley S. , Su Xuefen
Published: April 2023

Funnel plots of associations between circulating CRP and the risk of ovarian cancer
Supplementary data from Young Adult and Usual Adult Body Mass Index and Multiple Myeloma Risk: A Pooled Analysis in the International Multiple Myeloma Consortium (IMMC)
Authors: Birmann Brenda M. , Andreotti Gabriella , De Roos Anneclaire J. , Camp Nicola J. , Chiu Brian C.H. , Spinelli John J. , Becker Nikolaus , Benhaim-Luzon Véronique , Bhatti Parveen , Boffetta Paolo , Brennan Paul , Brown Elizabeth E. , Cocco Pierluigi , Costas Laura , Cozen Wendy , de Sanjosé Silvia , Foretová Lenka , Giles Graham G. , Maynadié Marc , Moysich Kirsten , Nieters Alexandra , Staines Anthony , Tricot Guido , Weisenburger Dennis , Zhang Yawei , Baris Dalsu , Purdue Mark P.
Published: April 2023

Table S1. Characteristics of the case-control studies included in the International Multiple Myeloma Consortium (IMMC) Lifestyle Factors Pooling Project (LFPP). Table S2. Usual adult BMI and pooled relative risk of multiple myeloma in population-based case-control studies within category of selected demographic risk factors. Table S3. Usual adult BMI and pooled relative risk of multiple myeloma in hospital-based case-control studies within category of selected demographic risk factors. Table S4. Pooled relative risk of multiple myeloma by category of weight and height: overall and by study design and interview type.