bluuebunny/crossref_metadata_2025 huggingface dataset:
Acupuncture and tuina knowledge graph with prompt learning
Authors: Li Xiaoran , Han Xiaosong , Wei Siqing , Liang Yanchun , Guan Renchu
Published: April 2024

Introduction

Acupuncture and tuina, acknowledged as ancient and highly efficacious therapeutic modalities within the domain of Traditional Chinese Medicine (TCM), have provided pragmatic treatment pathways for numerous patients. To address the problems of ambiguity in the concept of Traditional Chinese Medicine (TCM) acupuncture and tuina treatment protocols, the lack of accurate quantitative assessment of treatment protocols, and the diversity of TCM systems, we have established a map-filling technique for modern literature to achieve personalized medical recommendations.

Methods

(1) Extensive acupuncture and tuina data were collected, analyzed, and processed to establish a concise TCM domain knowledge base. (2)A template-free Chinese text NER joint training method (TemplateFC) was proposed, which enhances the EntLM model with BiLSTM and CRF layers. Appropriate rules were set for ERE. (3) A comprehensive knowledge graph comprising 10,346 entities and 40,919 relationships was constructed based on modern literature.

Results

A robust TCM KG with a wide range of entities and relationships was created. The template-free joint training approach significantly improved NER accuracy, especially in Chinese text, addressing issues related to entity identification and tokenization differences. The KG provided valuable insights into acupuncture and tuina, facilitating efficient information retrieval and personalized treatment recommendations.

Discussion

The integration of KGs in TCM research is essential for advancing diagnostics and interventions. Challenges in NER and ERE were effectively tackled using hybrid approaches and innovative techniques. The comprehensive TCM KG our built contributes to bridging the gap in TCM knowledge and serves as a valuable resource for specialists and non-specialists alike.
Geochemistry of siltstones in the North Qilian Zhongbao–Mayinggou formations (Late Ordovician–Early Silurian): implications for paleoclimate, paleoweathering, and tectonic setting
Authors: Xia Yu , Hou Qian , Mou Chuanlong
Published: April 2024

The Late Ordovician–Early Silurian period witnessed the Phanerozoic mass extinction, glacial events, and volcanic events. Paleoweathering indexes chemical index of alteration (CIA), chemical index of weathering (CIW), and plagioclase index of alteration (PIA) indicated that the source area weathering changed from weak to moderate to intense. CIA values in the upper Zhongbao formation ranged from 66.71% to 73.97%, indicating a drier and colder climate. Upward, the CIA values on the bottom of the Mayinggou formation returned to the high value quickly (from 73.86% to 81.31%), suggesting that the ice age ended, the climate became warmer and wetter, and the sea level rose. The Al2O3–(CaO*+Na2O)–K2O triangular plots, Hf-La/Th, and SiO2–Al2O3/TiO2 bivariate plots inferred that the source of the siltstones in the two formations is mostly from the felsic igneous rocks. The samples from the Zhongbao–Mayinggou formations have chondrite-normalized rare earth element (REE) patterns similar to that of the North Qilian volcanic arc rocks. Geochemical discrimination plots displayed that the sediments of the Zhongbao–Mayinggou formations came from the active continental margin setting.
Glacial-interglacial sedimentation control on gas seepage exemplified by Vestnesa Ridge off NW Svalbard margin
Authors: Rasmussen Tine L. , Nielsen Tove
Published: April 2024

Vestnesa Ridge is built-up of thick contourites mainly deposited during the last ∼5 million years. Methane leaks from deep gas reservoirs creating pockmarks on its crest, and which have been the focus of numerous studies. Sedimentation patterns in relation to the pronounced changes in oceanography and climate of the last glacial-interglacial cycles and its possible impact of seepage of gas have rarely been studied. Here, we present a detailed history of contourite development covering the last ∼130,000 years with most details for the last 60,000 years. The study is based on 43 marine sediment cores and 1,430 km of shallow seismic lines covering the ridge including methane seep sites, with the purpose of reconstructing changes in depositional patterns in relation to paleoceanographical changes on glacial, interglacial, and millennial time scale in relation to activity of seepage of gas. The results show that thick Holocene deposits occurred below ∼1,250 m water depth in the western part of the ridge. Both in pockmarks at western and eastern Vestnesa Ridge, seepage decreased at ∼10–9 ka in the early Holocene. The fine Holocene mud likely reduced seepage to a slow diffusion of gas and microbial oxidation probably prevented escape from the seafloor. Results also showed that seepage of gas was highly variable during the glacial, and low to moderate during the cold Heinrich stadial H1 (19–15 ka) and Younger Dryas stadial (13–12 ka). Seepage reached a maximum during the deglaciation in the Bølling and Allerød interstadials 15–13 ka and early Holocene 12–10 ka. The deglaciation was a period of rapid climatic, oceanographic, and environmental changes. Seepage of gas varied closely with these events indicating that slower tectonic/isostatic movements probably played a minor role in these millennial scale rapid fluctuations in gas emission.
Vegetation extraction in riparian zones based on UAV visible light images and marked watershed algorithm
Authors: Ma Yuanjie , Chen Xu , Zhang Yaping
Published: April 2024

The riparian zone is an area where land and water are intertwined, and vegetation is rich and complexly distributed. The zone can be directly involved in ecological regulation. In order to protect the ecological environment of the riparian zone, it is necessary to monitor the distribution of vegetation. However, there are many disturbing factors in extracting riparian vegetation, the most serious of which are water bodies with similar colours to the vegetation. To overcome the influence of water bodies on vegetation extraction from UAV imagery of riparian areas, this paper proposes a novel approach that combines the marked watershed algorithm with vegetation index recognition. First, the image is pre-segmented using edge detection, and the output is further refined with the marked watershed algorithm. Background areas are classified as potential regions for vegetation distribution. Subsequently, the final vegetation distribution is extracted from these potential vegetation areas using the vegetation index. The segmentation threshold for the vegetation index is automatically determined using the OTSU algorithm. The experimental results indicate that our method, when applied to UAV aerial imagery of the riparian zone, achieves an overall accuracy of over 94%, a user accuracy of over 97%, and a producer accuracy of over 93%.
A retrospective analysis of the perceived impact of the COVID-19 pandemic on systemic barriers to success for university student parents
Authors: Franklin Khadeejah T. , Saval Alexa J. , Cafer Anne M. , Reinemann Dana N.
Published: April 2024

Introduction

Student parents, both undergraduate and graduate, face the difficult task of balancing their studies and raising children, and they are a population often neglected or forgotten by higher education administration. The COVID-19 pandemic enhanced already present issues student parents face through the implementation of virtual schooling, increased daycare costs and closings, staying home with sick children, and a lack of local support system, among others. Further, many student parents are graduate students who are performing research that requires physical campus space and equipment to fulfill their educational requirements, and their research progress come to a halt when the country locked down.

Methods

This study explored the struggles student parents faced prior to the COVID-19 pandemic, what issues the pandemic exacerbated, and what new problems have since arisen. Participants completed surveys assessing the consequences of being a student parent during the pandemic, coping resources available to them, the effect of being a student parent during the pandemic on their mental health, and demographic information.

Results

Prevalent themes include substantial declines in mental health, feelings of inadequacy in regards to both their parenting and academic abilities compared to their non-student parent peers, and a striking lack of resources or acknowledgement from their institution.

Discussion

The survey results are framed within the social-ecological model to better understand the systemic implications of student parent conditions. Finally, we formulate a set of recommendations to higher education administrations to inform them about the unique struggles student parents face and suggest strategies for mitigation.
Peer assessment to promote self-regulated learning with technology in higher education: systematic review for improving course design
Authors: Ortega-Ruipérez Beatriz , Correa-Gorospe José Miguel
Published: April 2024

Peer assessment is one of the approaches to develop self-regulation of learning. When evaluating the work of peers, metacognitive strategies of critical reflection are employed. They improve their own learning especially if evaluative feedback and/or suggestions for modification are provided. The aim of this systematic review is to learn how technology can facilitate self-regulation of learning, using peer assessment activities. We focus on higher education. To achieve the objective, we searched WoS and Scopus, obtaining 15 publications that concatenate the four search terms: self-regulated learning, peer assessment, higher education, and technology. These four terms must appear in the title, abstract or keywords. In this way, we ensure that the topic to be reviewed is central to the publication. The results are analyzed using the model for systematic review, which has three phases: description, synthesis, and critique. A proposal has been made to improve the design of courses in virtual classrooms, focusing on Moodle, and to include peer evaluation to improve self-regulated learning. It highlights the possibility of virtual classrooms to configure a rubric to guide the evaluation, together with the request for mandatory comments to justify the evaluation. This helps the student reflect on what is wrong and why, and how to improve. It also highlights the facility to randomly assign a specific number of tasks per reviewer or per task, and to make the whole process completely anonymous. The technology allows short deadlines for submission and review times to be maintained for instant feedback, as it can be configured with a single click. Finally, and related to this, Moodle can reopen the submission phase, to send an improved version based on feedback, and the evaluation phase, to check that the proposed improvements have been made. This helps to a greater extent to apply metacognitive strategies.
Unveiling the hub genes in the SIGLECs family in colon adenocarcinoma with machine learning
Authors: Li Tiantian , Yao Ji
Published: April 2024

Background

Despite the recognized roles of Sialic acid-binding Ig-like lectins (SIGLECs) in endocytosis and immune regulation across cancers, their molecular intricacies in colon adenocarcinoma (COAD) are underexplored. Meanwhile, the complicated interactions between different SIGLECs are also crucial but open questions.

Methods

We investigate the correlation between SIGLECs and various properties, including cancer status, prognosis, clinical features, functional enrichment, immune cell abundances, immune checkpoints, pathways, etc. To fully understand the behavior of multiple SIGLECs’ co-evolution and subtract its leading effect, we additionally apply three unsupervised machine learning algorithms, namely, Principal Component Analysis (PCA), Self-Organizing Maps (SOM), K-means, and two supervised learning algorithms, Least Absolute Shrinkage and Selection Operator (LASSO) and neural network (NN).

Results

We find significantly lower expression levels in COAD samples, together with a systematic enhancement in the correlations between distinct SIGLECs. We demonstrate SIGLEC14 significantly affects the Overall Survival (OS) according to the Hazzard ratio, while using PCA further enhances the sensitivity to both OS and Disease Free Interval (DFI). We find any single SIGLEC is uncorrelated to the cancer stages, which can be significantly improved by using PCA. We further identify SIGLEC-1,15 and CD22 as hub genes in COAD through Differentially Expressed Genes (DEGs), which is consistent with our PCA-identified key components PC-1,2,5 considering both the correlation with cancer status and immune cell abundance. As an extension, we use SOM for the visualization of the SIGLECs and show the similarities and differences between COAD patients. SOM can also help us define subsamples according to the SIGLECs status, with corresponding changes in both immune cells and cancer T-stage, for instance.

Conclusion

We conclude SIGLEC-1,15 and CD22 as the most promising hub genes in the SIGLECs family in treating COAD. PCA offers significant enhancement in the prognosis and clinical analyses, while using SOM further unveils the transition phases or potential subtypes of COAD.
Eltrombopag can promote platelet implantation after allogeneic hematopoietic stem cell transplantation as safely and similarly to thrombopoietin
Authors: Li Yahan , Kong Fansheng , Bai Guanchen , Jiang Yujie , Zhang Wenlu , Sun Xue , Sui Xiaohui , Li Ying , Ding Mei , Yuan Dai , Wang Xin , Fang Xiaosheng
Published: April 2024

Background

Eltrombopag has demonstrated efficacy in treating low platelet (PLT) levels, but it remains unclear whether eltrombopag can promote PLT engraftment after hematopoietic stem cell transplantation (HSCT).

Methods

Forty-one HSCT patients received eltrombopag 50 mg/d from +1 day until PLT >50 × 109/L or 1 month after HSCT. Fifty-one patients in the same period received thrombopoietin (TPO) to promote PLT graft after HSCT and served as a control group.

Results

A total of 51 patients who applied TPO during the same period were treated as a control. In the eltrombopag group, the median time to white blood cells (WBC) graft was 12 days (range, 10-17 days) and the PLT graft was 15 days (range, 10-30 days), whereas for the patients in the TPO group, the median time to WBC and PLT graft was 12 days (range, 9-23 days) and 15.5 days (range, 9-41 days), respectively. In the first month after HSCT, the median WBC count in the eltrombopag group was 4.41 × 109/L (range, 0.87-40.01 × 109/L) and the median PLT was 89x109/L (range, 30-401 × 109/L); the median WBC and PLT \counts in the TPO group were 4.65 × 109/L (range, 0.99-23.63 × 109/L) and 86 × 109/L (range, 5-512 × 109/L), respectively. Patients in the TPO or eltrombopag group did not experience serious side effects after drug administration, and the difference in side effects on liver and kidney function between the two groups was not statistically significant.

Conclusion

Eltrombopag is safe and similarly promotes platelet engraftment to thrombopoietin after allogeneic HSCT.
CARD11 regulates the thymic Treg development in an NF-κB-independent manner
Authors: Hu Yu , Han Lingli , Xu Wenwen , Li Tianci , Zhao Qifan , Lu Wei , Sun Jinqiao , Wang Ying
Published: April 2024

Introduction

CARD11 is a lymphoid lineage-specific scaffold protein regulating the NF-κB activation downstream of the antigen receptor signal pathway. Defective CARD11 function results in abnormal development and differentiation of lymphocytes, especially thymic regulatory T cells (Treg).

Method

In this study, we used patients’ samples together with transgenic mouse models carrying pathogenic CARD11 mutations from patients to explore their effects on Treg development. Immunoblotting and a GFP receptor assay were used to evaluate the activation effect of CARD11 mutants on NF-κB signaling. Then the suppressive function of Tregs carrying distinct CARD11 mutations was measured by in vitro suppression assay. Finally, we applied the retroviral transduced bone marrow chimeras to rescue the Treg development in an NF-κB independent manner.

Results and discuss

We found CARD11 mutations causing hyper-activated NF-κB signals also gave rise to compromised Treg development in the thymus, similar to the phenotype in Card11 deficient mice. This observation challenges the previous view that CARD11 regulates Treg lineage dependent on the NF-kB activation. Mechanistic investigations reveal that the noncanonical function CARD11, which negatively regulates the AKT/ FOXO1 signal pathway, is responsible for regulating Treg generation. Moreover, primary immunodeficiency patients carrying CARD11 mutation, which autonomously activates NF-κB, also represented the reduced Treg population in their peripheral blood. Our results propose a new regulatory function of CARD11 and illuminate an NF-κB independent pathway for thymic Treg lineage commitment.
Association between systemic inflammatory indicators with the survival of chronic kidney disease: a prospective study based on NHANES
Authors: Chen Yuan , Nie Yanfang , Wu Jiaying , Li Chunsheng , Zheng Lu , Zhu Bixiu , Min Yu , Ling Tao , Liu Xiaozhu
Published: April 2024

Background

systemic inflammation disorders were observed in chronic kidney disease (CKD). Whether the systemic inflammatory indicators could be optimal predictors for the survival of CKD remains less studied.

Methods

In this study, participants were selected from the datasets of the National Health and Nutrition Examination Survey (NHANES) between 1999 to 2018 years. Four systemic inflammatory indicators were evaluated by the peripheral blood tests including systemic immune-inflammation index (SII, platelet*neutrophil/lymphocyte), neutrophil-to-lymphocyte ratio (NLR), platelet-to-lymphocyte ratio (PLR), lymphocyte-to-monocyte ratio (LMR). Kaplan-Meier curves, restricted cubic spline (RCS), and Cox regression analysis were used to evaluate the association between the inflammatory index with the all-cause mortality of CKD. Receiver operating characteristic (ROC) and concordance index (C-index) were used to determine the predictive accuracy of varied systemic inflammatory indicators. Sensitive analyses were conducted to validate the robustness of the main findings.

Results

A total of 6,880 participants were included in this study. The mean age was 67.03 years old. Among the study population, the mean levels of systemic inflammatory indicators were 588.35 in SII, 2.45 in NLR, 133.85 in PLR, and 3.76 in LMR, respectively. The systemic inflammatory indicators of SII, NLR, and PLR were all significantly positively associated with the all-cause mortality of CKD patients, whereas the high value of LMR played a protectable role in CKD patients. NLR and LMR were the leading predictors in the survival of CKD patients [Hazard ratio (HR) =1.21, 95% confidence interval (CI): 1.07-1.36, p = 0.003 (3rd quartile), HR = 1.52, 95%CI: 1.35-1.72, p<0.001 (4th quartile) in NLR, and HR = 0.83, 95%CI: 0.75-0.92, p<0.001 (2nd quartile), HR = 0.73, 95%CI: 0.65-0.82, p<0.001 (3rd quartile), and = 0.74, 95%CI: 0.65-0.83, p<0.001 (4th quartile) in LMR], with a C-index of 0.612 and 0.624, respectively. The RCS curves showed non-linearity between systemic inflammatory indicators and all-cause mortality risk of the CKD population.

Conclusion

Our study highlights that systemic inflammatory indicators are important for predicting the survival of the U.S. population with CKD. The systemic inflammatory indicators would add additional clinical value to the health care of the CKD population.
Environmental impact on marginal coastal benthic communities within the Jeju Island, South Korea temperate transition zone
Authors: Perrois Garance , Jöst Anna B. , Lee Kyeong-Tae , Pons Leonard M. T. , Yang Hyun-Sung , Son Young Baek , Park Heung-Sik , Kang Do-Hyung , Kim Taihun
Published: April 2024

Aim of study

Marine climatic transition zones are boundary areas of major climate zones, here the boundary between the subtropical and temperate zones. They present areas containing high abundance of organisms living at the limit of their physiological tolerance. These marginal populations are particularly sensitive to changes in their environment. As such, marine climatic transition zones are excellent natural playgrounds for climate change-related hypothesis testing, especially with respect to marine habitat response to ocean warming. The marginal biogenic habitats around Jeju Island, South Korea, which lies within the temperate transition zone, have gradually changed from macroalgal-dominated to hard coral-dominated habitats. Understanding the specific abiotic environmental factors that influence the distribution of the marginal populations in temperate transition zones (i.e., species at their occurrence limit) is crucial to predicting and managing temperate zone habitat changes caused by climate change. This study aims to identify the specific abiotic environmental factors that contribute to explaining the current spatial distribution of the declining temperate and expanding subtropical foundation species in Jeju waters.

Methods

Coverage and composition of sessile benthic communities were determined by photo-quadrat analysis at two depths (10 m and 15 m) at three sites along the island’s south, east, and north coasts in May and November 2022. Divergences in community composition between sites were characterized in light of ten quantitative environmental parameters.

Results

Our results show that sessile foundation communities vary significantly at different sites around the island. While the south is defined by high-latitude hard corals, predominately Alveopora japonica, the east is defined by the temperate canopy-forming macroalga Ecklonia cava, and the north is characterized by coralline algae. Winter sea surface temperature, water transparency, nutrient concentration, and water movement were statistically the most impactful environmental factors determining which foundation species constitute each distinct benthic community.

Conclusion

This study provides valuable baseline information on the impacts of abiotic environmental factors on marine sessile communities in a temperate transition zone.
The mussel larvae microbiome changes in response to a temperature rise
Authors: Zhu You-Ting , Liang Xiao , Liu Tian-Tian , Power Deborah M. , Li Yi-Feng , Yang Jin-Long
Published: April 2024

Ocean warming caused by global climate change influences the function, diversity, and community dynamics of commensal microorganisms, including the hemolymph and the gut microbiota in mussels. However, the microbiota in hard-shelled mussel (Mytilus coruscus) larvae and the effect of temperature on the microbial community structure have yet to be studied. Herein, we investigated the core microbiota of M. coruscus larvae and the impact of acute (4 h) and gradual (4 days) exposure to a rise in seawater temperature from 21 to 25 °C. Eleven core genera were identified in M. coruscus larvae by 16S rDNA gene sequencing: Alteromonas, Brevundimonas, Delftia, Microbacterium, Neptuniibacter, Neptunomonas, Pseudoalteromonas, Rhodococcus, Stenotrophomonas, Tenacibaculum, and Thalassotalea. The microbiota of larvae in the short exposure treatment was similar to the control. However, the abundance of Delftia, Neptunomonas, Pseudoalteromonadaceae, Rhodococcus, and Stenotrophomonas decreased significantly in the long-exposure larvae. In contrast, at the genus level, the abundance of Tenacibaculum increased significantly. Diversity and multivariate analyses confirmed that the microbiota patterns were linked to seawater warming over the long term. Microbiota diversity did not change significantly, regardless of whether the seawater temperature increased quickly or slowly; however, we observed a significant increase in the microbiota species abundance at higher temperatures. Among the altered bacterial genera, Delftia, Neptunomonas, and Rhodococcus function in the degradation of organic compounds; Pseudoalteromonas is closely associated with mussel attachment and metamorphosis, and Tenacibaculum is an opportunistic pathogen that can cause marine mollusk death. The results suggest that marine heat waves caused by climate change may reduce the ability of symbiotic bacteria to degrade environmental toxins, will affect mussel larvae metamorphosis, and increase the abundance of opportunistic pathogens, thereby increasing the risk of disease and death of mussel larvae.
ChatBBNJ: a question–answering system for acquiring knowledge on biodiversity beyond national jurisdiction
Authors: Wang Xiaowei , Zhang Mingdan , Liu Hao , Ma Xiaodong , Liu Yingchao , Chen Yitong
Published: April 2024

The marine biodiversity in Areas beyond national jurisdiction (ABNJ), encompassing approximately two-thirds of the global ocean, is persistently declining. In 2023, the agreement on the Conservation and Sustainable Use of Marine Biodiversity of Areas Beyond National Jurisdiction (BBNJ) was officially adopted. Implementing the BBNJ Agreement has the potential to effectively meet global needs for preserving marine biodiversity. Nevertheless, the implementation requires dealing with thousands of legal clauses, and the parties participating in the process lack adequate means to acquire knowledge connected to BBNJ. This paper introduces ChatBBNJ, a highly efficient question-answering system that combines a novel data engineering technique with large language models (LLMs) of Natural Language Processing (NLP). The system aims to efficiently provide stakeholders with BBNJ-related knowledge, thereby facilitating and enhancing their comprehension and involvement with the subject matter. The experimental results demonstrate that the proposed ChatBBNJ exhibits superior expertise in the BBNJ domain, outperforming baseline models in terms of precision, recall, and F1-scores. The successful deployment of the suggested system is expected to greatly assist stakeholders in acquiring BBNJ knowledge and facilitating the effective implementation of the BBNJ Agreement. Therefore, this is expected to contribute to the conservation and sustainable use of marine biodiversity in ABNJ.
Effect of Mg incorporation on the properties of PCL/Mg composites for potential tissue engineering applications
Authors: Nuthana Kalva Sumama , Ali Fawad , Subhadra Keyan Kripa , Khan Omar M. , Pasha Mujaheed , Velasquez Carlos A. , Koç Muammer
Published: April 2024

Polycaprolactone (PCL) is a biocompatible polymer readily moldable into various shapes and designs. However, its low mechanical strength and slow biodegradation restrict its use in tissue engineering. Magnesium (Mg), a biocompatible metal with excellent osteoconductivity and biodegradability, is a promising choice for tissue engineering applications. This study investigates the influence of Mg incorporation on the properties of PCL/Mg composites, aiming to evaluate their suitability for 3D-printable (3DP) tissue engineering applications. We synthesized a series of PCL/Mg composites with varying Mg concentrations and characterized their mechanical, thermal, and degradation properties. According to microscopic analysis of the composite films, the Mg particles are dispersed consistently throughout all the compositions. The findings demonstrated that adding Mg influenced PCL’s mechanical and thermal properties. The mechanical test results showed that the tensile strength of 15% Mg composite filaments improved by around 10% compared to the neat PCL filaments. However, the elastic modulus decreased by around 50% for the same composition. The thermal study revealed a significant reduction in the degradation temperature from above 400°C for pure PCL to around 300°C for PCL/Mg composite having 15% Mg. Additionally, the weight loss during in vitro degradation showed that the presence of Mg had significantly increased the degradation rate of composite samples. Also, Mg incorporation influences cell adhesion, with better attachment observed for 10% Mg 3DP samples. Overall, PCL/Mg composites offer a solution to overcome the limitation of low thermo-mechanical properties typically associated with the PCL.
PLT antigen discrepancy pattern among couples with recurrent abortion
Authors: Shad Ghazal Ahmadzadeh , Ghasemi Ali , Zadsar Maryam , Shaeigan Mojgan , Samiee Shahram , Zare Ahad
Published: April 2024

Background

Recurrent abortion refers to a condition of two or more consecutive pregnancies without known etiology affected by miscarriage before the completion of the 20th week of gestational age. However, several hypotheses have been proposed, but not much data are available concerning the relationship between human platelet antigens (HPAs) polymorphisms and recurrent abortion. This study was conducted to evaluate the genetic differences between HPA-1, −2, −3, −5, and − 15 in Iranian couples with a history of recurrent abortion.

Methods

In this cross-sectional study, a total of 74 couples with at least 2 recurrent abortions without any known specified reasons enrolled in the study. HPA polymorphisms genotyping was performed by single-specific primer PCR. Genotype frequency was calculated using the Hardy–Weinberg equation.

Results

A total of 39 couples (52.7%) had HPA genotyping partial mismatches. The most common partial mismatch pairs were found concomitantly on both HPA-15a and HPA-15b in three couples (4%), followed by two (2.7%) on HPA-3a and one (1.3%) in each HPA-2b and HPA-5b. There was a deviation from the Hardy–Weinberg equilibrium in the HPA-2 and -5 systems.

Conclusion

The present study declared that partial mismatches of HPA-3 and -15 genotypes were common among Iranian couples due to the history of recurrent abortion and approximately half of the couples carried at least one HPA gene that was absent in their partners. Further studies might be helpful to clarify the association between HPA polymorphisms and recurrent abortion, such as an investigation into the alloantibodies against HPAs.
Expression of IL-4 and IL-12 in the aqueous humor of patients with chronic primary angle-closure glaucoma
Authors: Feng Qi , Shen Jiang , Zhang Li , Wang Qiong , Luo Surong , Luo Man , Chen Wei
Published: April 2024

Introduction

Angle-closure glaucoma is a common type of glaucoma in Asian populations. However, the role of inflammatory cytokines in angle-closure glaucoma is yet to be elucidated. Therefore, this study aimed to examine the expression of interleukin-4 (IL-4) and IL-12 in the aqueous humor of patients with chronic primary angle-closure glaucoma (CPACG) and elucidate the correlations between IL-4 and IL-12 concentrations in the aqueous humor, the degree of visual field defects, and retinal nerve fiber layer (RNFL) thickness in patients with CPACG.

Methods

Aqueous humor samples were obtained from 31 patients diagnosed with CPACG at the Shaoxing People’s Hospital between April 2022 and March 2023 and from 30 individuals with cataract (control). Based on the degree of the mean defect (MD), patients were divided into three groups: group A (MD ≤ −6dB, n= 10), group B (−6dB< MD< −12dB, n= 9), and group C (MD ≥ − 12dB, n= 12). RNFL thickness was measured using an optical coherence tomograph, and the concentrations of IL-4 and IL-12 in the aqueous humor were measured using Luminex technology.

Results

Aqueous humor concentration of IL-4 was significantly higher (p = 0.036) in the CPACG group than in the cataract group. However, there was no significant difference (p > 0.05) in IL- 12 concentration between the two groups. Additionally, there were no significant differences (p > 0.05) in IL-4 and IL-12 levels among patients with varying degrees of visual field defects (groups A, B, and C). Spearman’s correlation analysis showed that IL-4 and IL-12 concentrations were not correlated (p > 0.05) with RNFL thickness around the optic disc and the degree of visual field defects.

Discussion

Conclusively, IL-4 may play an important role in the pathogenesis of CPACG. Given that IL-4 and IL-12 concentrations in the aqueous humor were not significantly correlated with RNFL thickness and the degree of visual field defects, the increase in IL-4 and IL-12 expression may not induce apoptosis and loss of retinal ganglion cells or affect RNFL thickness as well as the degree of visual field defects.
A novel method for precise implantation of tracheal Y-shaped stent
Authors: Ding Xin-Min , Ding Yu-An , Duan Yan-Fang , Chen Jiao-Yang , Li Long , Ren Fang-Ping , Sun Jie
Published: April 2024

The tracheal Y-shaped stent is mainly used for the treatment of critical patients with airway stenosis or esophagotracheal fistula near carina. A novel method for precise implantation of Y-shaped tracheal stents was developed using double-lumen endotracheal intubation and flexible bronchoscopy. This approach aims to address the limitations associated with X-ray or rigid bronchoscopy guidance, such as operational difficulties and the risk of inaccurate stent placement leading to implantation failure or suffocation. With this new technique, 13 tracheal Y-shaped stents were successfully implanted. This method shows promise in reducing the complexity of stent implantation and facilitating timely treatment for patients in need. Additionally, it has the potential to update current operating standards and guidelines for this procedure.
Association between statin use and acute pulmonary embolism in intensive care unit patients with sepsis: a retrospective cohort study
Authors: Yang Dengcang , He Yanyan , Wang Qianqian , Yu Yi
Published: April 2024

Introduction

Acute pulmonary embolism (APE) is a life-threatening medical condition that is frequently encountered and associated with significant incidence and mortality rates, posing a substantial threat to patients’ well-being and quality of life. Sepsis is prominent independent risk factor for the development of APE. Despite recent investigations indicating a reduced APE risk through statin therapy, its impact on patients with sepsis and APE remains unresolved.

Methods

The Medical Information Mart for Intensive Care (MIMIC)-IV database was utilized to identify patients diagnosed with sepsis and APE, irrespective of statin treatment status, as part of this study. The primary study aim was to assess the risk of APE, which was analyzed using multivariate logistic regression models.

Results

The study encompassed a total of 16,633 participants, with an average age of 64.8 ± 16.2 years. Multivariate logistic regression revealed that septic patients receiving statin therapy in the intensive care unit (ICU) exhibited a 33% reduction in the risk of developing APE (OR = 0.67, 95% CI: 0.52–0.86, p < 0.001). The findings of further analyses, including stratification based on statin usage, dosage, and propensity score matching, consistently reinforced the hypothesis that administering statins to patients with sepsis effectively mitigates their potential APE risk.

Discussion

The results of the study provide compelling evidence in favor of administering statins to septic patients as a prophylactic measure against APE, given that statins may reduce the risk of developing APE, and their anti-APE effect appears to be dose-dependent. Nonetheless, future randomized controlled trials are needed to validate these results.
Bioinformatics analysis and experimental verification of TIGD1 in non-small cell lung cancer
Authors: Xia Lingchun , Yang Zhuofan , Xv Mingming , Wang Guohui , Mao Yaxin , Yang Yihan , Tang Jian
Published: April 2024

Introduction

Non-small cell lung cancer (NSCLC) is a prevalent respiratory system tumor. Triggered transposable element derivative 1 (TIGD1) exhibits significant overexpression in various tumor cells and tissues, suggesting its involvement in cancer progression.

Methods

Clinical data and gene expression profiles of lung adenocarcinoma were collected from TCGA, UCSC XENA, and GEO databases. Computational techniques and empirical studies were employed to analyze the role of TIGD1 in NSCLC. Cellular experiments were conducted using the H1299 cell line, including RNA interference, cell viability assays, quantitative PCR, wound-healing assays, western blotting, and plate clone formation assays.

Results

Bioinformatics analysis revealed TIGD1’s potential as a biomarker for diagnosing and predicting lung cancer. It also indicated promise as a target for immune-related therapy and targeted drug therapy. Cellular studies confirmed TIGD1’s involvement in cancer cell proliferation, invasion, and migration. Furthermore, an association between TIGD1 and the PI3K/AKT signaling pathway was suggested.

Discussion

The findings suggest that TIGD1 plays a vital role in NSCLC progression, making it a potential diagnostic biomarker and therapeutic target. The association with the PI3K/AKT signaling pathway provides insights into the underlying molecular mechanisms. Integrating computational analysis with empirical studies enhances our understanding of TIGD1’s significance in NSCLC and opens avenues for further research into targeted therapies.
Graded exercise with motion style acupuncture therapy for a patient with failed back surgery syndrome and major depressive disorder: a case report and literature review
Authors: Kim Do-Young , Ha In-Hyuk , Kim Ju-Yeon
Published: April 2024

Effective treatment of failed back surgery syndrome (FBSS) remains challenging despite urgent medical attention requirements. Depression is a contributing factor to the development and poor prognosis of FBSS, and vice versa. We report the case of a patient with FBSS and major depressive disorder (MDD) treated with graded exercise combined with motion-style acupuncture therapy (MSAT). A 53-year-old male veteran who had undergone lumbar discectomy and laminectomy with instrumented fusion was admitted to the hospital with re-current back pain and radiative pain in the left leg. The effects of failed surgery triggered MDD as a comorbidity. After a six-week routine treatment without remarkable improvement, a three-week program of graded exercise with MSAT was applied. The numeric rating scale (NRS) and short form-36 (SF-36) were used to assess low back pain with radiating leg pain, and daily functioning levels, respectively. The voluntary walking distance of the patients was measured. To analyze the therapeutic effects and other applications of the intervention, we surveyed clinical trials using MSAT or graded exercise therapy (GET). Three weeks of graded exercise with MSAT reduced physical and mental functional disabilities (SF-36, physical component: 15.0 to 37.2, mental component: 21.9 to 30.1) as well as the intensity of low back pain and/or radiative leg pain (NRS: 50 to 30). Furthermore, as the therapeutic intensity gradually increased, there was a significant corresponding increase in daily walking distance (mean daily walking distance, the first week vs. baseline, second, and third week, 3.05 ± 0.56: 2.07 ± 0.79, 4.27 ± 0.96, and 4.72 ± 1.04 km, p = 0.04, p = 0.02, and p = 0.003, respectively). Three randomized controlled trials of GET were included, all showing statistically significant antidepressant effects in the diseased population. Graded exercise with MSAT may be an effective rehabilitative therapy for patients with FBSS and MDD who have impaired daily routines.
Vertical differentiation drives the changes in the main microflora and metabolites of carbon and nitrogen cycling in the early freeze–thaw period in the Qinghai Lake Basin
Authors: Zhang Ni , Chen Kelong , Wu Chenxi , Jiang Hongchen , Du Yangong , Chen Zhirong , Wang Xinye , Qi Desheng , Yang Ziwei
Published: April 2024

Global climate change has altered the frequency of soil freeze–thaw cycles, but the response of soil microorganisms to different elevation gradients during the early freeze–thaw period remains unclear. So far, the influence of the altitudinal gradient on the microbial community and metabolic characteristics in the early freeze–thaw period of the Qinghai Lake Basin remains unclear. To this end, we collected soil at different elevations in the early freeze–thaw period of the Qinghai Lake Basin and investigated the influence of the elevation gradient on soil microbial community characteristics and soil metabolic processes as well as the corresponding environmental driving mechanism by high-throughput sequencing and LC–MS (Liquid Chromatograph-Mass Spectrometer) nontargeted metabolite determination. The results showed that Proteobacteria were the dominant microflora in the Qinghai Lake Basin. The dominant phyla associated with carbon and nitrogen are Proteobacteria and Firmicutes, both of which are significantly affected by elevation. The soil physicochemical factors jointly affected the soil microbial communities and metabolism. Total phosphorus nitrate nitrogen and pH were the main driving factors of the microbial community, and metabolites were sensitive to changes in chemical factors. In short, the microbial community structure and function, soil physicochemical factors and soil metabolic processes were significantly affected by the altitudinal gradient in the early freeze–thaw period, while the microbial community diversity showed no significant response to the altitudinal gradient. Additionally, a high potassium content in the soil may promote the growth and reproduction of bacteria associated with carbon and nitrogen cycling, as well as the production of metabolites.
Transcriptional dynamics and regulatory function of milRNAs in Ascosphaera apis invading Apis mellifera larvae
Authors: Fan Xiaoxue , Gao Xuze , Zang He , Liu Zhitan , Jing Xin , Liu Xiaoyu , Guo Sijia , Jiang Haibin , Wu Ying , Huang Zhijian , Chen Dafu , Guo Rui
Published: April 2024

In the present study, small RNA (sRNA) data from Ascosphaera apis were filtered from sRNA-seq datasets from the gut tissues of A. apis-infected Apis mellifera ligustica worker larvae, which were combined with the previously gained sRNA-seq data from A. apis spores to screen differentially expressed milRNAs (DEmilRNAs), followed by trend analysis and investigation of the DEmilRNAs in relation to significant trends. Additionally, the interactions between the DEmilRNAs and their target mRNAs were verified using a dual-luciferase reporter assay. In total, 974 A. apis milRNAs were identified. The first base of these milRNAs was biased toward U. The expression of six milRNAs was confirmed by stem–loop RT-PCR, and the sequences of milR-3245-y and milR-10285-y were validated using Sanger sequencing. These miRNAs grouped into four significant trends, with the target mRNAs of DEmilRNAs involving 42 GO terms and 120 KEGG pathways, such as the fungal-type cell wall and biosynthesis of secondary metabolites. Further investigation demonstrated that 299 DEmilRNAs (novel-m0011-3p, milR-10048-y, bantam-y, etc.) potentially targeted nine genes encoding secondary metabolite-associated enzymes, while 258 (milR-25-y, milR-14-y, milR-932-x, etc.) and 419 (milR-4561-y, milR-10125-y, let-7-x, etc.) DEmilRNAs putatively targeted virulence factor-encoded genes and nine genes involved in the MAPK signaling pathway, respectively. Additionally, the interaction between ADM-B and milR-6882-x, as well as between PKIA and milR-7009-x were verified. Together, these results not only offer a basis for clarifying the mechanisms underlying DEmilRNA-regulated pathogenesis of A. apis and a novel insight into the interaction between A. apis and honey bee larvae, but also provide candidate DEmilRNA–gene axis for further investigation.
An efficient inoculation method to evaluate virulence differentiation of field strains of sugarcane smut fungus
Authors: Guo Feng , Meng Jiaorong , Huang Ji , Yang Yanfang , Lu Shan , Chen Baoshan
Published: April 2024

Sugarcane smut, caused by the fungal pathogen Sporisorium scitamineum, is a prominent threat to the sugarcane industry. The development of smut resistant varieties is the ultimate solution for controlling this disease, due to the lack of other efficient control methods. Artificial inoculation method is used to evaluate the virulence differentiation of pathogens. The mostly used artificial inoculation methods are soaking of the seed canes in the teliospore solution and injection of teliospores or haploid sporidia into the sugarcane sprouts. However, due to the infection nature of the pathogen that invades the sugarcane plant through meristem tissue of the sprout or shoot, the rate of successful infection is often low and fluctuated, resulting in low confidence of the assays. We recently reported a rapid and high-throughput inoculation method called plantlet soaking by using tissue culture-derived sugarcane plantlets as the test plants. Here, we compare different inoculation methods and report the characterization of parameters that may affect the sensitivity and efficiency of the plantlet soaking technique. The results showed that sugarcane plantlets were highly vulnerable to infection, even with the inoculum density at 6.0 × 105 basidial spores/ml, and this method could be applied to all varieties tested. Notably, varieties showing high smut resistance in the field exhibited high susceptibility when inoculated with the plantlet soaking method, suggesting that the plantlet soaking method is a good complement to the traditional methods for screening germplasms with internal resistance. In addition, this method could also be used to monitor the variation of cellular virulence of the smut pathogen strains in the field.
Comprehensive whole genome analysis of Staphylococcus aureus isolates from dairy cows with subclinical mastitis
Authors: Khasapane Ntelekwane George , Nkhebenyane Jane , Mnisi Zamantungwa , Kwenda Stanford , Thekisoe Oriel
Published: April 2024

Staphylococcus species are the primary cause of mastitis in dairy cows across the world. Staphylococcus aureus has recently become a pathogen that is zoonotic and multidrug resistant. This study aimed to sequence whole genomes of 38 S. aureus isolates from 55 subclinical mastitis dairy cows of 7 small-scale farmers in the Free State Province, South Africa and document and their antimicrobial and virulence genes. The 38 isolates were grouped by the in silico multi-locus sequencing types (MLST) into seven sequence types (STs), that is (ST 97, 352, 152, 243) and three new STs (ST8495, ST8500, and ST8501). Thirty-three S. aureus isolates were divided into 7 core single-nucleotide polymorphism (SNP) clusters. Among the 9 distinct spa-types that were detected, Spa-types t2883 accounted for the majority of isolates at 12 (31.57%), followed by t416 with 11 (28.94%) and t2844 with 5 (13.15%). The data also revealed the identification of four (4) plasmids, with Rep_N (rep20) accounting for the majority of isolates with 17 (44.73%), followed by Inc18 (repUS5) with 2 (5.26%). These isolates included 11 distinct antimicrobial resistance genes and 23 genes linked to bacterial virulence. Surprisingly, no methicillin resistance associated genes were detected in these isolates. Genome data of the current study will contribute to understanding epidemiology S. aureus genotypes and ultimately aid in developing treatment and control plans to stop the spread of mastitis in the Free State province and South Africa as a whole.