bluuebunny/crossref_metadata_2025 huggingface dataset:
Distinct Changes in Gut Microbiota Are Associated with Estradiol-Mediated Protection from Diet-Induced Obesity in Female Mice
Authors: Acharya Kalpana D. , Noh Hye L. , Graham Madeline E. , Suk Sujin , Friedline Randall H. , Gomez Cesiah C. , Parakoyi Abigail E. R. , Chen Jun , Kim Jason K. , Tetel Marc J.
Published: August 2021

A decrease in ovarian estrogens in postmenopausal women increases the risk of weight gain, cardiovascular disease, type 2 diabetes, and chronic inflammation. While it is known that gut microbiota regulates energy homeostasis, it is unclear if gut microbiota is associated with estradiol regulation of metabolism. In this study, we tested if estradiol-mediated protection from high-fat diet (HFD)-induced obesity and metabolic changes are associated with longitudinal alterations in gut microbiota in female mice. Ovariectomized adult mice with vehicle or estradiol (E2) implants were fed chow for two weeks and HFD for four weeks. As reported previously, E2 increased energy expenditure, physical activity, insulin sensitivity, and whole-body glucose turnover. Interestingly, E2 decreased the tight junction protein occludin, suggesting E2 affects gut epithelial integrity. Moreover, E2 increased Akkermansia and decreased Erysipleotrichaceae and Streptococcaceae. Furthermore, Coprobacillus and Lactococcus were positively correlated, while Akkermansia was negatively correlated, with body weight and fat mass. These results suggest that changes in gut epithelial barrier and specific gut microbiota contribute to E2-mediated protection against diet-induced obesity and metabolic dysregulation. These findings provide support for the gut microbiota as a therapeutic target for treating estrogen-dependent metabolic disorders in women.
The Impact of Photorespiratory Glycolate Oxidase Activity on Arabidopsis thaliana Leaf Soluble Amino Acid Pool Sizes during Acclimation to Low Atmospheric CO2 Concentrations
Authors: Dellero Younès , Mauve Caroline , Jossier Mathieu , Hodges Michael
Published: August 2021

Photorespiration is a metabolic process that removes toxic 2-phosphoglycolate produced by the oxygenase activity of ribulose-1,5-bisphosphate carboxylase/oxygenase. It is essential for plant growth under ambient air, and it can play an important role under stress conditions that reduce CO2 entry into the leaf thus enhancing photorespiration. The aim of the study was to determine the impact of photorespiration on Arabidopsis thaliana leaf amino acid metabolism under low atmospheric CO2 concentrations. To achieve this, wild-type plants and photorespiratory glycolate oxidase (gox) mutants were given either short-term (4 h) or long-term (1 to 8 d) low atmospheric CO2 concentration treatments and leaf amino acid levels were measured and analyzed. Low CO2 treatments rapidly decreased net CO2 assimilation rate and triggered a broad reconfiguration of soluble amino acids. The most significant changes involved photorespiratory Gly and Ser, aromatic and branched-chain amino acids as well as Ala, Asp, Asn, Arg, GABA and homoSer. While the Gly/Ser ratio increased in all Arabidopsis lines between air and low CO2 conditions, low CO2 conditions led to a higher increase in both Gly and Ser contents in gox1 and gox2.2 mutants when compared to wild-type and gox2.1 plants. Results are discussed with respect to potential limiting enzymatic steps with a special emphasis on photorespiratory aminotransferase activities and the complexity of photorespiration.
Roles of Estrogens in the Healthy and Diseased Oviparous Vertebrate Liver
Authors: Tramunt Blandine , Montagner Alexandra , Tan Nguan Soon , Gourdy Pierre , Rémignon Hervé , Wahli Walter
Published: August 2021

The liver is a vital organ that sustains multiple functions beneficial for the whole organism. It is sexually dimorphic, presenting sex-biased gene expression with implications for the phenotypic differences between males and females. Estrogens are involved in this sex dimorphism and their actions in the liver of several reptiles, fishes, amphibians, and birds are discussed. The liver participates in reproduction by producing vitellogenins (yolk proteins) and eggshell proteins under the control of estrogens that act via two types of receptors active either mainly in the cell nucleus (ESR) or the cell membrane (GPER1). Estrogens also control hepatic lipid and lipoprotein metabolisms, with a triglyceride carrier role for VLDL from the liver to the ovaries during oogenesis. Moreover, the activation of the vitellogenin genes is used as a robust biomarker for exposure to xenoestrogens. In the context of liver diseases, high plasma estrogen levels are observed in fatty liver hemorrhagic syndrome (FLHS) in chicken implicating estrogens in the disease progression. Fishes are also used to investigate liver diseases, including models generated by mutation and transgenesis. In conclusion, studies on the roles of estrogens in the non-mammalian oviparous vertebrate liver have contributed enormously to unveil hormone-dependent physiological and physiopathological processes.
Hypometabolic Responses to Chronic Hypoxia: A Potential Role for Membrane Lipids
Authors: Farhat Elie , Weber Jean-Michel
Published: August 2021

Metabolic suppression is an essential strategy to cope with chronic hypoxia. This review examines the physiological processes used to survive in low oxygen environments. It proposes a novel mechanism–the remodeling of membrane lipids–to suppress ATP use and production. Temperature (homeoviscous adaptation), diet (natural doping in migrant birds) and body mass (membrane pacemaker of metabolism) have an impact on the lipid composition of membranes, which, in turn, modulates metabolic capacity. Vertebrate champions of hypoxia tolerance show extensive changes in membrane lipids upon in vivo exposure to low oxygen. These changes and those observed in hibernating mammals can promote the downregulation of ion pumps (major ATP consumers), ion channels, mitochondrial respiration capacity (state 3, proton leak, cytochrome c oxidase), and energy metabolism (β-oxidation and glycolysis). A common membrane signal regulating the joint inhibition of ion pumps and channels could be an exquisite way to preserve the balance between ATP supply and demand in hypometabolic states. Membrane remodeling together with more traditional mechanisms could work in concert to cause metabolic suppression.
Photocatalytic Degradation of Plastic Waste: A Mini Review
Authors: Lee Qian Ying , Li Hong
Published: August 2021

Plastic waste becomes an immediate threat to our society with ever-increasing negative impacts on our environment and health by entering our food chain. Sunlight is known to be the natural energy source that degrades plastic waste at a very slow rate. Mimicking the role of sunlight, the photocatalytic degradation process could significantly accelerate the degradation rate thanks to the photocatalyst that drastically facilitates the photochemical reactions involved in the degradation process. This mini review begins with an introduction to the chemical compositions of the common plastic waste. The mechanisms of photodegradation of polymers in general were then revisited. Afterwards, a few photocatalysts were introduced with an emphasis on titanium dioxide (TiO2), which is the most frequently used photocatalyst. The roles of TiO2 photocatalyst in the photodegradation process were then elaborated, followed by the recent advances of photocatalytic degradation of various plastic waste. Lastly, our perspectives on the future research directions of photocatalytic plastic degradation are present. Herein, the importance of catalytic photodegradation is emphasized to inspire research on developing new photocatalysts and new processes for decomposition of plastic waste, and then to increase its recycling rate particularly in the current pandemic with the ever-increasing generation of plastic waste.
Stimulus-Responsive Shrinkage in Electrospun Membranes: Fundamentals and Control
Authors: Fang Feiyu , Wang Han , Wang Huaquan , Huang Wei Min , Chen Yahui , Cai Nian , Chen Xindu , Chen Xin
Published: August 2021

Shrinkage is observed in many electrospun membranes. The stretched conformation of the macromolecular chains has been proposed as the possible cause. However, so far, our understanding of the fundamentals is still qualitative and cannot provide much help in the shrinkage control. In this paper, based on the crimped fibers after stimulus-induced shrinkage, a clear evidence of buckling, the gradient pre-strain field in the cross-section of the electrospun fibers, which is the result of a gradient solidification field and a tensile force in the fibers during electrospinning, is identified as the underlying mechanism for the stimulus-induced shrinkage. Subsequently, two buckling conditions are derived. Subsequently, a series of experiments are carried out to reveal the influence of four typical processing parameters (namely, the applied voltage, solution concentration, distance between electrodes, and rotation speed of collector), which are highly relevant to the formation of the gradient pre-strain field. It is concluded that there are some different ways to achieve the required shrinkage ratios in two in-plane directions (i.e., the rotational and transverse directions of the roller collector). Some of the combinations of these parameters are more effective at achieving high uniformity than others. Hence, it is possible to optimize the processing parameters to produce high-quality membranes with well-controlled shrinkage in both in-plane directions.
Formation and Elimination of Satellite Droplets during Monodisperse Droplet Generation by Using Piezoelectric Method
Authors: Hu Zejian , Li Shengji , Yang Fan , Lin Xunjie , Pan Sunqiang , Huang Xuefeng , Xu Jiangrong
Published: August 2021

One of the key questions in the generation of monodisperse droplets is how to eliminate satellite droplets. This paper investigates the formation and elimination of satellite droplets during the generation of monodisperse deionized water droplets based on a piezoelectric method. We estimated the effects of two crucial parameters—the pulse frequency for driving the piezoelectric transducer (PZT) tube and the volume flow rate of the pumping liquid—on the generation of monodisperse droplets of the expected size. It was found that by adjusting the pulse frequency to harmonize with the volume flow rate, the satellite droplets can be eliminated through their coalescence with the subsequent mother droplets. An increase in the tuning pulse frequency led to a decrease in the size of the monodisperse droplets generated. Among three optimum conditions (OCs) (OC1: 20 mL/h, 20 kHz; OC2: 30 mL/h, 30 kHz; and OC3: 40 mL/h, 40 kHz), the sizes of the generated monodisperse deionized water droplets followed a bimodal distribution in OC1 and OC2, whereas they followed a Gaussian distribution in OC3. The average diameters were 87.8 μm (OC1), 85.9 μm (OC2), and 84.8 μm (OC3), which were 8.46%, 6.14%, and 4.69% greater than the theoretical one (81.0 μm), respectively. This monodisperse droplet generation technology is a promising step in the production of monodisperse aerosols for engineering applications.
High-Performance Temperature Sensor by Employing Screen Printing Technology
Authors: Liu Zhaojun , Tian Bian , Zhang Bingfei , Zhang Zhongkai , Liu Jiangjiang , Zhao Libo , Shi Peng , Lin Qijing , Jiang Zhuangde
Published: August 2021

In the present study, a high-performance n-type temperature sensor was developed by a new and facile synthesis approach, which could apply to ambient temperature applications. As impacted by the low sintering temperature of flexible polyimide substrates, a screen printing technology-based method to prepare thermoelectric materials and a low-temperature heat treatment process applying to polymer substrates were proposed and achieved. By regulating the preparation parameters of the high-performance n-type indium oxide material, the optimal proportioning method and the post-treatment process method were developed. The sensors based on thermoelectric effects exhibited a sensitivity of 162.5 μV/°C, as well as a wide range of temperature measurement from ambient temperature to 223.6 °C. Furthermore, it is expected to conduct temperature monitoring in different scenarios through a sensor prepared in masks and mechanical hands, laying a foundation for the large-scale manufacturing and widespread application of flexible electronic skin and devices.
Sinapic Acid Release at the Cell Level by Incorporation into Nanoparticles: Experimental Evidence Using Biomembrane Models
Authors: Torrisi Cristina , Morgante Arianna , Malfa Giuseppe , Acquaviva Rosaria , Castelli Francesco , Pignatello Rosario , Sarpietro Maria Grazia
Published: August 2021

Sinapic acid (SA), belonging to the phenylpropanoid family, and its derivatives are secondary metabolites found in the plant kingdom. In recent years, they have drawn attention because of their various biological activities, including neuroprotective effects. In this study, SA was incorporated into two different nanoparticle systems, solid lipid nanoparticles (SLN) and nanostructured lipid carriers (NLC). The influence of different concentrations of SA on the nanoparticle systems was evaluated. It was studied the efficacy of the nanoparticle systems to release the active ingredient at cell level through the use of models of biological membranes represented by multilamellar vesicles (MLV) of dimyristoylphosphatidylcholine (DMPC) and conducting kinetic studies by placing in contact SLN and NLC, both unloaded and loaded with two different amounts of SA, with the same biological membrane model. Differential scanning calorimetry (DSC) was used for these studies. The results indicated a different distribution of SA within the two nanoparticle systems and that NLC are able to incorporate and release SA inside the structure of the biological membrane model.
Molecular Characterisation and Phylogenetic Analysis of Dermatophytic Fungi Isolated from Tinea Capitis in Northwest Nigeria Using Sequence of the 28S rRNA
Authors: Ungo-kore Hussain Yahaya , Ehinmidu Joseph Olorunmola , Onaolapo Josiah Ademola , Olonitola Olayeni Stephen
Published: August 2021

The detection and identification of fungal DNA from clinical samples is one of the fundamental approaches in biomedicine. The incidence, distribution, and control of dermatophytes has progress significantly and the use of phylogenetic species concepts based on rRNA regions have enhanced the taxonomy of dermatophyte species; however, the use of 28S rDNA genes has certain limitations. This gene has been used in dermatophyte taxonomy with limited enumeration; we appraised the sequence disparity within and among groups of the species, the gene ranking in identification, phylogenetic analysis, and taxonomy of 32 strains of eight dermatophyte species. In this study, a set of primers was adopted to amplify the target followed by a partial sequencing of the rDNA. The utilization of a pairwise nucleotide differentiation, an affinity was observed among eight dermatophyte species, with disparity among species ranging from 0 to 197 base pair (bp). Intra-species bp differences were found within strains of Trichophyton eriotrephon, Trichophyton bullosum, Trichophyton simii (Trichophyton genus), Microsporum audouinii, and Trichophyton tonsurans (Microsporum and Trichophyton genus, respectively); however, only some strains of Trichophyton eriotrephon were found to be invariant having three genotypes. Trichophyton tonsurans exhibited most intra-species variability. The characterization and construction of a phylogenetic tree of 28S rDNA gene on dermatophyte species provide a bedrock of an additional finding of connections between species. However, 28S rRNA capture provides a novel method of effective and sensitive detection of dermatophytes lodged in human skin scale. We report for the first time the emergence of T. eriotrephon, T. bullosum, T. simii, T. benhamiae, and Ctenomyces serratus dermatophytes from Tinea capitis in Nigeria.
Stress Effect of Food Matrices on Viability of Probiotic Cells during Model Digestion
Authors: Matouskova Petra , Hoova Julie , Rysavka Petr , Marova Ivana
Published: August 2021

The aim of this study was to evaluate the influence of model (alcohol, sugar, salt, protein and acid) and real foods and beverages on the viability of probiotics during incubation and artificial digestion. Viability of monocultures Lactobacillus acidophilus CCM4833 and Bifidobacterium breve CCM7825T, and a commercial mixture of 9 probiotic bacterial strains, was tested by cultivation assay and flow cytometry. In model foods, the best viability was determined in the presence of 0.2 g/L glucose, 10% albumin and 10% ethanol. As the most suitable real food for probiotic survival, complex protein and carbohydrate substrates were found, such as beef broth, potato salad with pork, chicken with rice, chocolate spread, porridge and yoghurt. The best liquid was milk and meat broth, followed by Coca-Cola, beer and coffee. Viability of probiotics was higher when consumed with meals than with beverages only. Addition of prebiotics increased the viability of probiotics, especially in presence of instant and fast foods. Generally, the highest viability of probiotics during artificial digestion was observed in mixed culture in the presence of protein, sugar and fat, or their combination. The increase of cell viability observed in such foods during model digestion may further contribute to the positive effect of probiotics on human health.
Whole-Genome SNP Analysis Identifies Putative Mycobacterium bovis Transmission Clusters in Livestock and Wildlife in Catalonia, Spain
Authors: Perea Claudia , Ciaravino Giovanna , Stuber Tod , Thacker Tyler C. , Robbe-Austerman Suelee , Allepuz Alberto , Val Bernat Pérez de
Published: August 2021

The high-resolution WGS analyses of MTBC strains have provided useful insight for determining sources of infection for animal tuberculosis. In Spain, tuberculosis in livestock is caused by Mycobacterium bovis and Mycobacterium caprae, where wildlife reservoirs play an important role. We analyzed a set of 125 M. bovis isolates obtained from livestock and wildlife from Catalonia to investigate strain diversity and identify possible sources and/or causes of infection. Whole-genome SNP profiles were used for phylogenetic reconstruction and pairwise SNP distance analysis. Additionally, SNPs were investigated to identify virulence and antimicrobial resistance factors to investigate clade-specific associations. Putative transmission clusters (≤12 SNPs) were identified, and associated epidemiological metadata were used to determine possible explanatory factors for transmission. M. bovis distribution was heterogeneous, with 7 major clades and 21 putative transmission clusters. In order of importance, the explanatory factors associated were proximity and neighborhood, residual infection, livestock-wildlife interaction, shared pasture, and movement. Genes related to lipid transport and metabolism showed the highest number of SNPs. All isolates were pyrazinamide resistant, and five were additionally resistant to isoniazid, but no clade-specific associations could be determined. Our findings highlight the importance of high-resolution molecular surveillance to monitor bovine tuberculosis dynamics in a low-prevalence setting.
Nationwide Temporal and Geographical Distribution of Tick Populations and Phylogenetic Analysis of Severe Fever with Thrombocytopenia Syndrome Virus in Ticks in Korea, 2020
Authors: Seo Min-Goo , Noh Byung-Eon , Lee Hak Seon , Kim Tae-Kyu , Song Bong-Goo , Lee Hee Il
Published: August 2021

Since 2010, the Korea Disease Control and Prevention Agency has established centers at 16 locations to monitor disease vectors and pathogens. Here, we examined tick populations to understand the geographical and temporal distribution of severe fever with thrombocytopenia syndrome virus (SFTSV) vectors in 2020. From April to November, 63,376 ticks were collected from traps to monitor tick populations, with a trap index of 41.3. Tick incidence varied from April to October, with population peaks observed for nymphs in May, adults in July, and larvae in September. The predominant tick species were Haemaphysalis longicornis, Haemaphysalis spp., H. flava, Ixodes spp., Amblyomma testudinarium, and Ixodes nipponensis. Approximately 50% of the collected ticks were pooled into 2973 groups to detect the rate of SFTSV infection in ticks. The minimum infection rate (MIR) of SFTSV was 0.2%, and Andong had the highest MIR for SFTSV (4.0%). The B3 genotype was the most prevalent (52.2%) followed by B2 (28.6%), B5 (15.9%), B4 (1.6%), and B6 (1.6%). We identified widely distributed tick species and a high degree of diversity in SFTSV strains in ticks from different geographical regions. The results may provide a basis for future epidemiological studies and risk assessments for tick-borne diseases.
Multiple Techno-Functional Characteristics of Leuconostoc and Their Potential in Sourdough Fermentations
Authors: Müller Denise C. , Mischler Sandra , Schönlechner Regine , Miescher Schwenninger Susanne
Published: August 2021

In this study, the potential of Leuconostoc as non-conventional sourdough starter cultures was investigated. A screening for antifungal activities of 99 lactic acid bacteria (LAB) strains revealed high suppression of bakery-relevant moulds in nine strains of Leuconostoc with activities against Penicillium sp., Aspergillus sp., and Cladosporium sp. Mannitol production was determined in 49 Leuconostoc strains with >30 g/L mannitol in fructose (50 g/L)-enriched MRS. Further, exopolysaccharides (EPS) production was qualitatively determined on sucrose (40 g/L)-enriched MRS agar and revealed 59 EPS positive Leuconostoc strains that harboured dextransucrase genes, as confirmed by PCR. Four multifunctional Lc. citreum strains (DCM49, DCM65, MA079, and MA113) were finally applied in lab-scale sourdough fermentations (30 °C, 24 h). Lc. citreum was confirmed by MALDI-TOF MS up to 9 log CFU/g and pH dropped to 4.0 and TTA increased to 12.4. Antifungal compounds such as acetic acid, phenyllactic and hydroxyphenyllactic acids were determined up to 1.7 mg/g, 2.1 µg/g, and 1.3 µg/g, respectively, mannitol up to 8.6 mg/g, and EPS up to 0.62 g/100 g. Due to the observed multifunctionalities and the competitiveness in the natural flour microbiota present in sourdoughs, non-conventional LAB genera such as Leuconostoc seem promising for application in sourdough-based bakery products.
The Discovery of Vitreoscilla Hemoglobin and Early Studies on Its Biochemical Functions, the Control of Its Expression, and Its Use in Practical Applications
Authors: Webster Dale A. , Dikshit Kanak L. , Pagilla Krishna R. , Stark Benjamin C.
Published: August 2021

In 1986, the surprising identification of a hemoglobin (VHb) in the bacterium Vitreoscilla greatly extended the range of taxa in which this oxygen binding protein functions. Elucidation of many of its biochemical properties and relation to overall cell physiology, as well as the sequence of the gene encoding it and aspects of control of its expression were determined in the following years. In addition, during the early years following its discovery, strategies were developed to use its expression in heterologous microbial hosts to enhance processes of practical usefulness. The VHb discovery also served as the foundation for what has become the fascinatingly rich field of bacterial hemoglobins. VHb’s position as the first known bacterial hemoglobin and its extensive use in biotechnological applications, which continue today, make a review of the early studies of its properties and uses an appropriate and interesting topic thirty-five years after its discovery.
Bonsecamin: A New Cyclic Pentapeptide Discovered through Heterologous Expression of a Cryptic Gene Cluster
Authors: Lasch Constanze , Stierhof Marc , Estévez Marta Rodríguez , Myronovskyi Maksym , Zapp Josef , Luzhetskyy Andriy
Published: August 2021

The intriguing structural complexity of molecules produced by natural organisms is uncontested. Natural scaffolds serve as an important basis for the development of molecules with broad applications, e.g., therapeutics or agrochemicals. Research in recent decades has demonstrated that by means of classic metabolite extraction from microbes only a small portion of natural products can be accessed. The use of genome mining and heterologous expression approaches represents a promising way to discover new natural compounds. In this paper we report the discovery of a novel cyclic pentapeptide called bonsecamin through the heterologous expression of a cryptic NRPS gene cluster from Streptomyces albus ssp. chlorinus NRRL B-24108 in Streptomyces albus Del14. The new compound was successfully isolated and structurally characterized using NMR. The minimal set of genes required for bonsecamin production was determined through bioinformatic analysis and gene deletion experiments. A biosynthetic route leading to the production of bonsecamin is proposed in this paper.
Endemic Jeffrey Pine Beetle Associates: Beetle/Mite Fungal Dissemination Strategies and Interactions That May Influence Beetle Population Levels
Authors: Mercado Javier E. , Ortiz-Santana Beatriz , Kay Shannon L.
Published: August 2021

Fungal and mite associates may drive changes in bark beetle populations, and mechanisms constraining beetle irruptions may be hidden in endemic populations. We characterized common fungi of endemic-level Jeffrey pine beetle (JPB) in western USA and analyzed their dissemination by JPB (maxillae and fecal pellet) and fungivorous mites to identify if endogenous regulation drove the population. We hypothesized that: (1) as in near-endemic mountain pine beetle populations, JPB’s mutualistic fungus would either be less abundant in endemic than in non-endemic populations or that another fungus may be more prevalent; (2) JPB primarily transports its mutualistic fungus, while its fungivorous mites primarily transport another fungus, and (3) based on the prevalence of yeasts in bark beetle symbioses, that a mutualistic interaction with blue-stain fungi present in that system may exist. Grosmannia clavigera was the most frequent JPB symbiont; however, the new here reported antagonist, Ophiostoma minus, was second in frequency. As hypothesized, JPB mostly carried its mutualist fungus while another fungus (i.e., antagonistic) was mainly carried by mites, but no fungal transport was obligate. Furthermore, we found a novel mutualistic interaction between the yeast Kuraishia molischiana and G. clavigera which fostered a growth advantage at temperatures associated with beetle colonization.
Geochemical and Volcanological Criteria in Assessing the Links between Volcanism and VMS Deposits: A Case on the Iberian Pyrite Belt, Spain
Authors: Pascual Emilio , Donaire Teodosio , Toscano Manuel , Macías Gloria , Pin Christian , Hamilton Michael
Published: August 2021

VMS deposits in the Iberian Pyrite Belt (IPB), Spain and Portugal, constitute the largest accumulation of these deposits on Earth. Although several factors account for their genetic interpretation, a link between volcanism and mineralization is generally accepted. In many VMS districts, research is focused on the geochemical discrimination between barren and fertile volcanic rocks, these latter being a proxy of VMS mineralization. Additionally, the volcanological study of igneous successions sheds light on the environment at which volcanic rocks were emplaced, showing an emplacement depth consistent with that required for VMS formation. We describe a case on the El Almendro–Villanueva de los Castillejos (EAVC) succession, Spanish IPB, where abundant felsic volcanic rocks occur. According to the available evidence, their geochemical features, εNd signature and U–Pb dates suggest a possible link to VMS deposits. However, (paleo)volcanological evidence here indicates pyroclastic emplacement in a shallow water environment. We infer that such a shallow environment precluded VMS generation, a conclusion that is consistent with the absence of massive deposits all along this area. We also show that this interpretation lends additional support to previous models of the whole IPB, suggesting that compartmentalization of the belt had a major role in determining the sites of VMS deposition.
Dolomitization Controlled by Paleogeomorphology in the Epicontinental Sea Environment: A Case Study of the 5th Sub-Member in 5 Member of the Ordovician Majiagou Formation in Daniudi Gas Field, Ordos Basin
Authors: Li Yilin , Xu Wang , Fu Meiyan , Deng Hucheng , Wu Dong , He Jianhua , Guo Hengwei , Chen Pei
Published: August 2021

The 5th sub-member in 5 Member Ordovician Majiagou Formation in Daniudi Gas Field, Ordos Basin, is deposited in an environment consisting of an ancient epicontinental sea, where very fine crystalline dolostone reservoir has developed. In this study, based on the petrological and geochemical characteristics, the genesis of the dolomite developed in M55 were studied by analyzing the properties and sources of the dolomitization fluids, and the influence of the paleogeomorphology differences on the distribution of dolostone was also discussed in order to clarify the distribution of the dolostone developed in the lime flat of the epicontinental sea. The dolostone of the M55 had a crystal structure, mainly including microcrystalline and very fine crystalline. The content of MgO and CaO in dolomite was negatively correlated, indicating that it was the result of replacement. The dolomite was dark red under cathode luminescence, and the distribution mode of rare earth elements showed the negative anomaly of Ce and Eu, indicating that the dolomitization fluid was sea-sourced fluid. The δ13C, δ18O, and 87Sr/86Sr isotope range of limestone was similar to that of Ordovician seawater in the study area, whereas the δ13C, δ18O, and 87Sr/86Sr of dolostone were obviously more positive than that of limestone. The substitute index of the salinity (Z) of the dolomitization fluid was higher than 122, which is higher than limestone (Z = 120.5), indicating that the dolomitization fluid was slightly evaporated seawater. The wormholes observed on the core and the gypsum in the penecontemporaneous period observed in the thin sections indicated that the dolostone was formed in a period when the sea level was relatively low, and it was the result of seepage–reflux dolomitization. By analyzing the correlation between the thickness of dolostone and the paleogeomorphology of the M55 of the sedimentary period, it was found that the thickness of dolostone at relatively high altitude was significantly larger than that of other areas. The development of dolostone was controlled by sea level, and the local paleogeomorphology controls the distribution of dolostone during the period of low sea level. There were many more limestone–dolostone cycles and larger cumulative thicknesses of dolostone at relatively higher topography. This study provides a theoretical basis for the prediction of the distribution of dolostone reservoirs in the carbonate tidal flat environment dominated by lime flats under the background of the ancient epicontinental sea.
The Role of Solar Energy (UV-VIS-NIR) as an Assistant for Sulfide Minerals Leaching and Its Potential Application for Metal Extraction
Authors: Yepsen Orlando , Araneda Eugenia , Yepsen Rodrigo , Estay Humberto
Published: August 2021

The mining industry is facing emerging challenges as a result of the increase in energy consumption and environmental demands. These facts have promoted the use of renewable energy sources, such as wind, geothermal and, mainly, solar energy. This paper discusses the role of solar energy (UV-VIS-NIR) in leaching processes, evaluating its potential application in metal extraction from sulfide minerals, based on photochemical mechanisms that promote the regeneration of ferric iron or the so called ferrous iron cycling. The present paper discusses the possibility that ultraviolet, visible light and near infrared irradiation (e.g., sunlight provided) can assist the leaching processes in two main ways: by the oxidation of sulfide minerals through in-situ generated Fenton-like reactions, and by the photochemical activation of semiconductor minerals that contain transition metals (Fe, Cu, and Cr, among others). Thus, this paper provides theoretical support to move towards the future application of photoleaching, which consist of a leaching process assisted by UV, VIS, and NIR irradiation. This technology can be considered a promising mineral processing route, using direct photochemical solar energy that can reduce the energy consumption (electricity, fuels) and the environmental impact, opening an opportunity for an alternative method of metal extraction from sulfide ores.
Innovative Reuse of Electric Arc Furnace Slag as Filler for Different Polymer Matrixes
Authors: Gobetti Anna , Cornacchia Giovanna , Ramorino Giorgio
Published: August 2021

The European steel industry produces about 70 million tons/year of steel by the electric arc furnace (EAF). The slag consists of about 15% by weight of the produced steel, thus from the perspective of the circular economy, it has a high potential as a co-product. This research aims to assess an innovative reuse of EAF slag as filler in different polymer matrixes: thermoplastic (polypropylene), thermosetting (epoxy resin), elastomeric (nitrile butadiene rubber), and recycled end of life rubber tire. A comparison between neat polymer and polymer filled with a certain amount of EAF slag has been carried out by tensile (or flexural), compression, and hardness tests. Experimental results show that slag as a filler increases the composites’ hardness and elastic modulus at the expense of toughness. For a safe reuse of the slag, the leaching of hazardous elements must comply with current legislation. It was found that, although the used EAF slag releases small amounts of Cr, Mo, and V, incorporating it into a polymer matrix reduces the leaching. The EAF slag particles distribution has been observed by scanning electron microscopy (SEM) images. The obtained results show good technical feasibility of this innovative slag application so that it could pave the way to a new industrial symbiosis between dissimilar sectors, bringing economic and environmental benefits.
Heterogeneous Distribution of Interlayer Cations and Iron as a Plausible Explanation of the Non-Exfoliation of Commercial Vermiculites Post Alcohol Treatment and Microwave Irradiation
Authors: Marcos Celia , del Río Zulema , Adawy Alaa
Published: August 2021

Two commercial vermiculites from China and Libby were treated with different alcohols (methanol, ethanol, propanol and butanol) at room temperature for up to one month and afterwards irradiated with microwaves. The exfoliated and non-exfoliated particles were characterized by X-ray diffraction, high-resolution transmission microscopy, thermal gravimetric analyses and infrared spectroscopy to explain the inconsistencies in relation to potassium distribution and the exfoliation observed in previous investigations. The percentages of the exfoliated and non-exfoliated particles of the investigated vermiculites greatly varied, with no indication of a relationship between the resultant exfoliation and alcohol treatment. The crystallinity and structural order of the phases composing the particles are independent of the success of their exfoliation. The existence of a mosaic structure, the intra-particle mosaic-like intergrowth of the different mineral phases, in the treated and pristine commercial vermiculites could be attributed to the heterogeneous distribution on the nanoscale of interlayer cations as potassium and iron.
Influence of Amino Acids on the Mobility of Iodide in Hydrocalumite
Authors: Wang Mengmeng , Akamatsu Hirofumi , Sasaki Keiko
Published: August 2021

In the cement system, hydrocalumite is a candidate adsorbent for low-level 129I anionic species. However, the stability of hydrocalumite after immobilizing I− is unclear when they are exposed to pedosphere characterized by organic substances derived from living organisms. In the present work, five amino acids were selected as simplified models of natural organic substances under alkaline conditions. L-cysteine (H2Cys) and L-aspartic acid (H2Asp) accelerated the release of I− from I-hydrocalumite through ion-exchange. Ion-exchange of Cys2− with I− in I-hydrocalumite was faster than Asp2−, and the interlayer spacing (d003) of Cys-hydrocalumite was smaller than that of Asp-hydrocalumite. DFT simulations not only supported the above results but also predicted that there was a positive correlation between the formation energies and interlayer spacings of amino acids intercalated hydrocalumite, depending on the configurations. Moreover, in the DFT predictions, the interaction between amino acids and metallic hydroxide layers was responsible for the formation of hydrogen bonds and Ca-O chemical bonds between the -COO− groups and [Ca2Al(OH)6]+. The other three amino acids did not show intercalation through ion-exchange. The stability of I-hydrocalumite is influenced differently by coexisting amino acids, depending on the ionic sizes, charge numbers, and hydrophilicity, which cause the second contamination.
An Attractive Blue Diopside from Sissone Valley, Western Alps, Italy
Authors: Caucia Franca , Scacchetti Maurizio , Marinoni Luigi , Gilio Mattia , Langone Antonio , Bartoli Omar , Vanotti Marco , Foianini Ivano
Published: August 2021

In this work a rare and attractive blue diopside present in Sissone valley in the Western Alps was investigated through different methodologies: geological survey; standard gemological methods; X-Ray Powder Diffraction; SEM observations; Raman spectrometry; EMP analyses of major elements; and LA-ICP-MS analyses for minor and trace elements. The host rock of investigated gems is represented by a Mg-calcite bearing marble, belonging to the Suretta nappe and composed of blue diopside, lizardite, phlogopite, forsterite, Ca-Mg-amphibole, and thomsonite; the rock was metamorphosed by the intrusion of Masino-Bregaglia pluton. The diopside is generally found in the core of veins in contact with green–blue tremolite and, more externally, with green–yellowish lizardite. The diopside samples show opaque diaphaneity, are inert to long and short-waves UV radiation, and their specific density varies between 3.24 and 3.30 g/cm3 while medium refraction between 1.680–1.683. The diopside shows a polycrystalline texture with interstitial Mg-calcite which acts as binder. The characteristic blue–turquoise color is mainly determined by traces of V and subordinately of Fe, Mn, Cr and Ti. The contents of V and Ti show a good positive correlation. The minerals associated with diopside in the lenticular veins also show enrichments in V. The blue diopside of the Sissone valley could certainly present a good commercial value, but unfortunately it is difficult to reach the outcrop sites.
Nitrogen-Containing Heterocycles as Significant Molecular Scaffolds for Medicinal and Other Applications
Authors: Frank Éva , Szőllősi György
Published: August 2021

Most of the organic compounds applied as pharmaceuticals or intermediates utilized in their synthesis contain heterocyclic motifs [...]
Highly Sensitive and Selective Eco-Toxic 4-Nitrophenol Chemical Sensor Based on Ag-Doped ZnO Nanoflowers Decorated with Nanosheets
Authors: Umar Ahmad , Akhtar M. Shaheer , Algadi Hassan , Ibrahim Ahmed A. , Alhamami Mohsen A. M. , Baskoutas Sotirios
Published: August 2021

Herein, we have developed a novel sensing electrode to detect the eco-toxic 4-nitrophenol (4-NP). Ag-doped-ZnO nanoflowers were synthesized by facile hydrothermal method and examined by several characterization techniques in order to understand the morphology, crystal structure, composition, and surface properties. Morphological results were confirmed by the formation of Ag-doped ZnO nanoflowers decorated with nanosheets. Ag-doped ZnO/glassy carbon electrode (GCE) electrode-material-matrix was used for electrochemical sensing of toxic 4-NP. Under optimized conditions, Ag-doped ZnO/GCE modified electrode exhibits high-sensitivity and selectivity compared to the bare GCE electrode. The Ag-doped ZnO/GCE modified electrode exhibits high electrocatalytic oxidation towards 4-NP. Anodic peak current of 4-NP is increased linearly by increasing the concentration of nitrophenol. Additionally, Ag-doped ZnO/GCE shows a wide range of sensitivity from 10 µM to 500 µM, and a linear calibration plot with a good detection limit of 3 µM (S/N = 3). The proposed Ag-doped ZnO/GCE modified electrode showed high sensing stability. In addition, the oxidation mechanism was studied. The obtained results revealed that the Ag-ZnO/GCE electrode could be the promising sensing electrode for 4-NP sensing.
Structural and Binding Effects of Chemical Modifications on Thrombin Binding Aptamer (TBA)
Authors: Valsangkar Vibhav , Vangaveti Sweta , Lee Goh Woon , Fahssi Walid M. , Awan Waqas S. , Huang Yicheng , Chen Alan A. , Sheng Jia
Published: August 2021

The thrombin binding aptamer (TBA) is a promising nucleic acid-based anticoagulant. We studied the effects of chemical modifications, such as dendrimer Trebler and NHS carboxy group, on TBA with respect to its structures and thrombin binding affinity. The two dendrimer modifications were incorporated into the TBA at the 5′ end and the NHS carboxy group was added into the thymine residues in the thrombin binding site of the TBA G-quadruplex (at T4, T13 and both T4/T13) using solid phase oligonucleotide synthesis. Circular dichroism (CD) spectroscopy confirmed that all of these modified TBA variants fold into a stable G-quadruplex. The binding affinity of TBA variants with thrombin was measured by surface plasmon resonance (SPR). The binding patterns and equilibrium dissociation constants (KD) of the modified TBAs are very similar to that of the native TBA. Molecular dynamics simulations studies indicate that the additional interactions or stability enhancement introduced by the modifications are minimized either by the disruption of TBA–thrombin interactions or destabilization elsewhere in the aptamer, providing a rational explanation for our experimental data. Overall, this study identifies potential positions on the TBA that can be modified without adversely affecting its structure and thrombin binding preference, which could be useful in the design and development of more functional TBA analogues.
Square-Planar Heteroleptic Complexes of α-Diimine-NiII-Catecholate Type: Intramolecular Ligand-to-Ligand Charge Transfer
Authors: Pashanova Kira I. , Bitkina Vladlena O. , Yakushev Ilya A. , Arsenyev Maxim V. , Piskunov Alexandr V.
Published: August 2021

Two heteroleptic NiII complexes combined the redox-active catecholate and 2,2′- bipyridine ligand platforms were synthesized to observe a photoinduced intramolecular ligand-to-ligand charge transfer (LL’CT, HOMOcatecholate → LUMOα-diimine). A molecular design of compound [NiII(3,6-Cat)(bipy)]∙CH3CN (1) on the base of bulky 3,6-di-tert-butyl-o-benzoquinone (3,6-DTBQ) was an annelation of the ligand with an electron donor glycol fragment, producing derivative [NiII(3,6-Catgly)(bipy)]∙CH2Cl2 (2), in order to influence the energy of LL’CT transition. A substantial longwave shift of the absorption peak was observed in the UV-Vis-NIR spectra of 2 compared with those in 1. In addition, the studied NiII derivatives demonstrated a pronounced negative solvatochromism, which was established using a broad set of solvents. The molecular geometry of both compounds can be ascribed as an insignificantly distorted square-planar type, and the π–π intermolecular stacking of the neighboring α-diimines is realized in a crystal packing. There is a lamellar crystal structure for complex 1, whereas the perpendicular T-motifs with the inter-stacks attractive π–π interactions form the packing of complex 2. The redox-active nature of ligand systems was clearly shown through the electrochemical study: a quasi-reversible one-electron reduction of 2,2′-bipyridine and two reversible successive one-electron oxidative conversations (“catecholate dianion—o-benzosemiquinonato radical anion—neutral o-benzoquinone”) were detected.
Multibubble Sonoluminescence from a Theoretical Perspective
Authors: Yasui Kyuichi
Published: August 2021

In the present review, complexity in multibubble sonoluminescence (MBSL) is discussed. At relatively low ultrasonic frequency, a cavitation bubble is filled mostly with water vapor at relatively high acoustic amplitude which results in OH-line emission by chemiluminescence as well as emissions from weakly ionized plasma formed inside a bubble at the end of the violent bubble collapse. At relatively high ultrasonic frequency or at relatively low acoustic amplitude at relatively low ultrasonic frequency, a cavitation bubble is mostly filled with noncondensable gases such as air or argon at the end of the bubble collapse, which results in relatively high bubble temperature and light emissions from plasma formed inside a bubble. Ionization potential lowering for atoms and molecules occurs due to the extremely high density inside a bubble at the end of the violent bubble collapse, which is one of the main reasons for the plasma formation inside a bubble in addition to the high bubble temperature due to quasi-adiabatic compression of a bubble, where “quasi” means that appreciable thermal conduction takes place between the heated interior of a bubble and the surrounding liquid. Due to bubble–bubble interaction, liquid droplets enter bubbles at the bubble collapse, which results in sodium-line emission.
MolADI: A Web Server for Automatic Analysis of Protein–Small Molecule Dynamic Interactions
Authors: Bai Bing , Zou Rongfeng , Chan H. C. Stephen , Li Hongchun , Yuan Shuguang
Published: August 2021

Protein–ligand interaction analysis is important for drug discovery and rational protein design. The existing online tools adopt only a single conformation of the complex structure for calculating and displaying the interactions, whereas both protein residues and ligand molecules are flexible to some extent. The interactions evolved with time in the trajectories are of greater interest. MolADI is a user-friendly online tool which analyzes the protein–ligand interactions in detail for either a single structure or a trajectory. Interactions can be viewed easily with both 2D graphs and 3D representations. MolADI is available as a web application.