bluuebunny/crossref_metadata_2025 huggingface dataset:
The Effect of Viral Clearance Achieved by Direct-Acting Antiviral Agents on Hepatitis C Virus Positive Patients with Type 2 Diabetes Mellitus: A Word of Caution after the Initial Enthusiasm
Authors: Ribaldone Davide Giuseppe , Sacco Marco , Saracco Giorgio Maria
Published: February 2020

The causal link between chronic hepatitis C and glycometabolic alterations has been confirmed by much biochemical, clinical, and epidemiological research work, but what is still controversial is the long-term clinical impact of sustained virologic response (SVR) achieved by direct-acting antiviral agents (DAAs) on patients with type 2 diabetes mellitus (DM). The aim of this paper is to summarize the biochemical and clinical consequences to DM of DAA-based therapy for hepatitis C virus (HCV) infection. An electronic search of Embase, PubMed, MEDLINE, Ovid, and the Cochrane Database of Systematic Reviews was conducted for publications assessing whether clearance of HCV achieved by interferon (IFN)-free antiviral therapy determines significant changes in glycometabolic control and clinical outcomes of diabetic patients. A beneficial effect of SVR obtained by DAA therapy on DM prevention and the short-term outcome of glycometabolic alterations are acknowledged by most of the studies. Whether this effect is maintained over the long term with a significant clinical impact on diabetic and liver disease is still a matter of debate.
Aromatase Inhibitors and Risk of Arthritis and Carpal Tunnel Syndrome among Taiwanese Women with Breast Cancer: A Nationwide Claims Data Analysis
Authors: Chien Hsu-Chih , Kao Yang Yea-Huei , Kwoh C. Kent , Chalasani Pavani , Wilson Debbie L. , Lo-Ciganic Wei-Hsuan
Published: February 2020

Tamoxifen or aromatase inhibitor (AI) therapy may prevent breast cancer recurrence, however, adverse effects may lead to treatment discontinuation. Evidence regarding the occurrence of AI-associated musculoskeletal problems among Asians is scarce. We identified women with breast cancer-initiating tamoxifen or AIs from the Taiwan National Health Insurance Research Database (2007–2012). Using multivariable cause-specific hazard models, we examined the association between endocrine therapy and the risk of any arthritis and carpal tunnel syndrome, adjusting for age, prior cancer treatment, and other health status factors. Among 32,055 eligible women with breast cancer (mean age = 52.6 ± 11.5 years), 87.4% initiated tamoxifen, 3.9% initiated anastrozole, 8.0% initiated letrozole, and 0.7% initiated exemestane. AI users had a higher 1-year cumulative incidence for any arthritis (13.0% vs. 8.2%, p < 0.0001) and carpal tunnel syndrome (1.4% vs. 0.8%, p = 0.008). Compared to tamoxifen users, AI users had a higher risk of any arthritis [adjusted hazard ratio (aHR) = 1.21, 95%CI = 1.09–1.34] and carpal tunnel syndrome (aHR = 1.68, 95%CI = 1.22–2.32). No significant difference was observed in the risks of any arthritis and carpal tunnel syndrome across different AIs. Taxane use was not associated with any arthritis (aHR = 0.92, 95%CI = 0.81–1.05) or carpal tunnel syndrome (aHR = 0.97, 95%CI = 0.67–1.40) compared to other chemotherapies. Taiwanese women with breast cancer-initiating AIs had an increased risk of arthritis and carpal tunnel syndrome compared to those who initiated tamoxifen.
TIPS Modification in the Management of Shunt-Induced Hepatic Encephalopathy: Analysis of Predictive Factors and Outcome with Shunt Modification
Authors: Schindler Philipp , Seifert Leon , Masthoff Max , Riegel Arne , Köhler Michael , Wilms Christian , Schmidt Hartmut H. , Heinzow Hauke , Wildgruber Moritz
Published: February 2020

Purpose: To evaluate predictive parameters for the development of Hepatic Encephalopathy (HE) after Transjugular Intrahepatic Portosystemic Shunt (TIPS) placement and for success of shunt modification in the management of shunt-induced HE. Methods: A retrospective analysis of all patients with TIPS (n = 344) has been performed since 2011 in our university liver center. n = 45 patients with HE after TIPS were compared to n = 48 patients without HE after TIPS (case-control-matching). Of n = 45 patients with TIPS-induced HE, n = 20 patients received a reduction stent (n = 18) or TIPS occlusion (n = 2) and were differentiated into responders (improvement by at least one HE grade according to the West Haven classification) and non-responders (no improvement). Results: Older patient age, increased serum creatinine and elevated International Normalized Ratio (INR) immediately after TIPS placement were independent predictors for the development of HE. In 11/20 patients (responders, 55%) undergoing shunt modification, the HE grade was improved compared with nine non-responders (45%), with no relevant recurrence of refractory ascites or variceal bleeding. A high HE grade after TIPS insertion was the only positive predictor of treatment response (p = 0.019). A total of 10/11 responders (91%) survived the 6 months follow-up after modification but only 6/9 non-responders (67%) survived. Discussion: Older patient age as well as an increased serum creatinine and INR after TIPS are potential predictors for the development of HE. TIPS reduction for the treatment of TIPS-induced HE is safe, with particular benefit for patients with pronounced HE.
Genomic Profiling of Uterine Aspirates and cfDNA as an Integrative Liquid Biopsy Strategy in Endometrial Cancer
Authors: Casas-Arozamena Carlos , Díaz Eva , Moiola Cristian Pablo , Alonso-Alconada Lorena , Ferreiros Alba , Abalo Alicia , López Gil Carlos , Oltra Sara S. , de Santiago Javier , Cabrera Silvia , Sampayo Victoria , Bouso Marta , Arias Efigenia , Cueva Juan , Colas Eva , Vilar Ana , Gil-Moreno Antonio , Abal Miguel , Moreno-Bueno Gema , Muinelo-Romay Laura
Published: February 2020

The incidence and mortality of endometrial cancer (EC) have risen in recent years, hence more precise management is needed. Therefore, we combined different types of liquid biopsies to better characterize the genetic landscape of EC in a non-invasive and dynamic manner. Uterine aspirates (UAs) from 60 patients with EC were obtained during surgery and analyzed by next-generation sequencing (NGS). Blood samples, collected at surgery, were used for cell-free DNA (cfDNA) and circulating tumor cell (CTC) analyses. Finally, personalized therapies were tested in patient-derived xenografts (PDXs) generated from the UAs. NGS analyses revealed the presence of genetic alterations in 93% of the tumors. Circulating tumor DNA (ctDNA) was present in 41.2% of cases, mainly in patients with high-risk tumors, thus indicating a clear association with a more aggressive disease. Accordingly, the results obtained during the post-surgery follow-up indicated the presence of ctDNA in three patients with progressive disease. Moreover, 38.9% of patients were positive for CTCs at surgery. Finally, the efficacy of targeted therapies based on the UA-specific mutational landscape was demonstrated in PDX models. Our study indicates the potential clinical applicability of a personalized strategy based on a combination of different liquid biopsies to characterize and monitor tumor evolution, and to identify targeted therapies.
Impaired Right and Left Ventricular Longitudinal Function in Patients with Fibrotic Interstitial Lung Diseases
Authors: Buonauro Agostino , Santoro Ciro , Galderisi Maurizio , Canora Angelo , Sorrentino Regina , Esposito Roberta , Lembo Maria , Canonico Mario Enrico , Ilardi Federica , Fazio Valeria , Golia Bruno , Sanduzzi Zamparelli Alessandro , Bocchino Maria Luisa
Published: February 2020

Background: Left ventricular (LV) and right ventricular (RV) dysfunction is recognized in idiopathic pulmonary fibrosis (IPF). Little is known about cardiac involvement in non-idiopathic pulmonary fibrosis (no-IPF). This issue can be explored by advanced echocardiography. Methods: Thirty-three clinically stable and therapy-naive fibrotic IPF and 28 no-IPF patients, and 30 healthy controls were enrolled. Exclusion criteria were autoimmune systemic diseases, coronary disease, heart failure, primary cardiomyopathies, chronic obstructive lung diseases, pulmonary embolism, primary pulmonary hypertension. Lung damage was evaluated by diffusion capacity for carbon monoxide (DLCOsb). All participants underwent an echo-Doppler exam including 2D global longitudinal strain (GLS) of both ventricles and 3D echocardiographic RV ejection fraction (RVEF). Results: We observed LV diastolic dysfunction in IPF and no-IPF, and LV GLS but not LV EF reduction only in IPF. RV diastolic and RV GLS abnormalities were observed in IPF versus both controls and no-IPF. RV EF did not differ significantly between IPF and no-IPF. DLCOsb and RV GLS were associated in the pooled pulmonary fibrosis population and in the IPF subgroup (β = 0.708, p < 0.001), independently of confounders including pulmonary arterial systolic pressure. Conclusion: Our data highlight the unique diagnostic capabilities of GLS in distinguishing early cardiac damage of IPF from no-IPF patients.
Lysosomal Ceramide Metabolism Disorders: Implications in Parkinson’s Disease
Authors: Paciotti Silvia , Albi Elisabetta , Parnetti Lucilla , Beccari Tommaso
Published: February 2020

Ceramides are a family of bioactive lipids belonging to the class of sphingolipids. Sphingolipidoses are a group of inherited genetic diseases characterized by the unmetabolized sphingolipids and the consequent reduction of ceramide pool in lysosomes. Sphingolipidoses include several disorders as Sandhoff disease, Fabry disease, Gaucher disease, metachromatic leukodystrophy, Krabbe disease, Niemann Pick disease, Farber disease, and GM2 gangliosidosis. In sphingolipidosis, lysosomal lipid storage occurs in both the central nervous system and visceral tissues, and central nervous system pathology is a common hallmark for all of them. Parkinson’s disease, the most common neurodegenerative movement disorder, is characterized by the accumulation and aggregation of misfolded α-synuclein that seem associated to some lysosomal disorders, in particular Gaucher disease. This review provides evidence into the role of ceramide metabolism in the pathophysiology of lysosomes, highlighting the more recent findings on its involvement in Parkinson’s disease.
Assessing the Impact of Reduced Travel on Exportation Dynamics of Novel Coronavirus Infection (COVID-19)
Authors: Anzai Asami , Kobayashi Tetsuro , Linton Natalie M. , Kinoshita Ryo , Hayashi Katsuma , Suzuki Ayako , Yang Yichi , Jung Sung-mok , Miyama Takeshi , Akhmetzhanov Andrei R. , Nishiura Hiroshi
Published: February 2020

The impact of the drastic reduction in travel volume within mainland China in January and February 2020 was quantified with respect to reports of novel coronavirus (COVID-19) infections outside China. Data on confirmed cases diagnosed outside China were analyzed using statistical models to estimate the impact of travel reduction on three epidemiological outcome measures: (i) the number of exported cases, (ii) the probability of a major epidemic, and (iii) the time delay to a major epidemic. From 28 January to 7 February 2020, we estimated that 226 exported cases (95% confidence interval: 86,449) were prevented, corresponding to a 70.4% reduction in incidence compared to the counterfactual scenario. The reduced probability of a major epidemic ranged from 7% to 20% in Japan, which resulted in a median time delay to a major epidemic of two days. Depending on the scenario, the estimated delay may be less than one day. As the delay is small, the decision to control travel volume through restrictions on freedom of movement should be balanced between the resulting estimated epidemiological impact and predicted economic fallout.
AUV 3D Path Planning Based on the Improved Hierarchical Deep Q Network
Authors: Sun Yushan , Ran Xiangrui , Zhang Guocheng , Xu Hao , Wang Xiangbin
Published: February 2020

This study proposed the 3D path planning of an autonomous underwater vehicle (AUV) by using the hierarchical deep Q network (HDQN) combined with the prioritized experience replay. The path planning task was divided into three layers, which realized the dimensionality reduction of state space and solved the problem of dimension disaster. An artificial potential field was used to design the positive rewards of the algorithm to shorten the training time. According to the different requirements of the task, this study modified the rewards in the training process to obtain different paths. The path planning simulation and field tests were carried out. The results of the tests corroborated that the training time of the proposed method was shorter than that of the traditional method. The path obtained by simulation training was proved to be safe and effective.
Mainstreaming Global Sustainable Development Goals through the UN Global Compact: The Case of Visegrad Countries
Authors: Zemanová Štěpánka , Druláková Radka
Published: February 2020

Since 2016, the United Nations Global Compact (UNGC), one of the most prominent worldwide corporate social responsibility and sustainability initiatives, has been linked to the Sustainable Development Goals (SDGs). However, despite the enormous scholarly interest in the UNGC since the very beginning, its impact on the integration of the SDGs into the business activities, risk management and reporting of its participants remains understudied. This paper examines support and action for the SDGs among companies from the Visegrad Four (V4) countries. It attempts to find out whether the recent UNGC efforts result in their mobilisation towards the SDGs’ implementation or merely creates a new space for instrumental adoption to improve image and reputation. The paper adopts qualitative content analysis of 42 Communications of Progress (COPs), submitted by 25 companies from the V4 in 2017–2019. The related self-assessments in the UNGC Participation Database were also used. It reveals that the companies obviously fulfil their obligation to report their activities related to SDGs but fail to provide relevant details. Moreover, divergences between the challenges faced by V4 countries and the priorities of the companies related to individual SDGs are also identified. This raises serious concerns about the UNGC’s practical effects.
Dependency of Machine Efficiency on the Thermal Behavior of Induction Machines
Authors: Kalt Svenja , Stolle Karl Ludwig , Neuhaus Philipp , Herrmann Thomas , Koch Alexander , Lienkamp Markus
Published: February 2020

The consideration of the thermal behavior of electric machines is becoming increasingly important in the machine design for electric vehicles due to the adaptation to more dynamic operating points compared to stationary applications. Whereas, the dependency of machine efficiency on thermal behavior is caused due to the impact of temperature on the resulting loss types. This leads to a shift of efficiency areas in the efficiency diagram of electric machines and has a significant impact on the maximum load capability and an impact on the cycle efficiency during operation, resulting in a reduction in the overall range of the electric vehicle. Therefore, this article aims at analyzing the thermal load limits of induction machines in regard to actual operation using measured driving data of battery electric vehicles. For this, a thermal model is implemented using MATLAB® and investigations to the sensitivity of model parameters as well as analysis of the continuous load capacity, thermal load and efficiency in driving cycles under changing boundary conditions are conducted.
Nonadditivity Index Based Quasi-Random Generation of Capacities and Its Application in Comprehensive Decision Aiding
Authors: Huang Li , Wu Jian-Zhang , Xi Rui-Jie
Published: February 2020

The capacity is a powerful tool with exponential coefficients to represent the interaction phenomenon among decision criteria, but its random generation becomes a tough issue for dealing with the monotonicity with all inclusion subsets as well as the complex constraints of decision preference. In this paper, we adopt a kind of explicit interaction index, the nonadditivity index, to construct two types of quasi-random generation methods of capacity under a given decision interaction preference. Compared to the existing random generation algorithms, the methods have relatively satisfactory performance on the statistics characteristic of generated capacities but need rather less calculation effort on the generation process. We also show the effectiveness of proposed quasi-random generation methods by an illustrative decision example.
Adaptive Iterative Splitting Methods for Convection-Diffusion-Reaction Equations
Authors: Geiser Jürgen , Hueso Jose L. , Martínez Eulalia
Published: February 2020

This article proposes adaptive iterative splitting methods to solve Multiphysics problems, which are related to convection–diffusion–reaction equations. The splitting techniques are based on iterative splitting approaches with adaptive ideas. Based on shifting the time-steps with additional adaptive time-ranges, we could embedded the adaptive techniques into the splitting approach. The numerical analysis of the adapted iterative splitting schemes is considered and we develop the underlying error estimates for the application of the adaptive schemes. The performance of the method with respect to the accuracy and the acceleration is evaluated in different numerical experiments. We test the benefits of the adaptive splitting approach on highly nonlinear Burgers’ and Maxwell–Stefan diffusion equations.
Reproducibility of High-Throughput Sample Properties Produced by a High-Temperature Molten Metal Droplet Generator
Authors: Imani Moqadam Saeedeh , Baune Michael , Bösing Ingmar , Heinzel Carsten , Meyer Daniel , Thomann Arne , Wielki Nicole , Ellendt Nils
Published: February 2020

A high-throughput method for the discovery of structural materials requires a large number of samples with highly reproducible properties. We propose using spherical micro-samples, which can be quickly produced by molten metal single droplet processes with high geometrical reproducibility. However, geometrical reproducibility does not automatically yield in the reproducibility of specific properties that are governed by the microstructure and thermal history of the samples. This work evaluates the reproducibility of two different steels (AISI D3 and 5140) in their as-synthesized state without additional heat treatment. By determining a set of well-established high-throughput descriptors by electrochemical analysis, particle-oriented peening, and micro machining, we show that high reproducibility can be achieved. Additionally, the determined properties correlate well with their austenitic (AISI D3) and martensitic (AISI5140) state. The AISI D3 shows an improved corrosion resistance, increased cutting forces during machining, and a higher deformation during particle-oriented peening. The reproducibility of the sample synthesis indicates that this type of sample is well suited for high-throughput methods to find new structural materials.
Effects of Multi-Pass Friction Stir Processing on Microstructures and Mechanical Properties of the 1060Al/Q235 Composite Plate
Authors: Wang Jian , Cheng Yun , Li Bo , Chen Cheng
Published: February 2020

Steel cuttings, holes and cracks always exist at the interfaces in the composite plate. Multi-pass friction stir processing (M-FSP) is proposed in this research to optimize the interface microstructure and the interface connection for the 1060Al/Q235 composite plate. Results show that the microstructures of 1060Al after M-FSP are fine and uniform owing to the strong stirring effect and recrystallization. Micro-defects formed by the welding can be repaired by the M-FSP. However, tunnel defects can also be formed in the matrix of aluminum by M-FSP, especially when the passes are one and two. The melting block and the melting lump in the composite plates are easy to become the source of crack. The shear strengths and the bending properties for the 1060Al/Q235 composite plate after M-FSP are the best when the passes are three, with the tool rotation speed of 1200 rpm and the forward speed of 60 mm/min. The optimized interfaces for the composite plate after M-FSP are mainly by the metallurgical bondings, with a certain thickness and discontinuous mechanical connections. Therefore, the crack extension stress is the largest and the mechanical properties are the best.
Altered Brain Metabolome Is Associated with Memory Impairment in the rTg4510 Mouse Model of Tauopathy
Authors: Tondo Mireia , Wasek Brandi , Escola-Gil Joan Carles , de Gonzalo-Calvo David , Harmon Clinton , Arning Erland , Bottiglieri Teodoro
Published: February 2020

Alzheimer’s disease (AD) is characterized, amongst other features, by the pathologic accumulation of abnormally phosphorylated tau filaments in neurons that lead to neurofibrillary tangles. However, the molecular mechanisms by which the abnormal processing of tau leads to neurodegeneration and cognitive impairment remain unknown. Metabolomic techniques can comprehensively assess disturbances in metabolic pathways that reflect changes downstream from genomic, transcriptomic and proteomic systems. In the present study, we undertook a targeted metabolomic approach to determine a total of 187 prenominated metabolites in brain cortex tissue from wild type and rTg4510 animals (a mice model of tauopathy), in order to establish the association of metabolic pathways with cognitive impairment. This targeted metabolomic approach revealed significant differences in metabolite concentrations of transgenic mice. Brain glutamine, serotonin and sphingomyelin C18:0 were found to be predictors of memory impairment. These findings provide informative data for future research on AD, since some of them agree with pathological alterations observed in diseased humans.
Addressing Glutathione Redox Status in Clinical Samples by Two-Step Alkylation with N-ethylmaleimide Isotopologues
Authors: Tomin Tamara , Schittmayer Matthias , Birner-Gruenberger Ruth
Published: February 2020

Determination of the ratio of reduced to oxidized glutathione is of profound clinical interest in assessing the oxidative status of tissues and body fluids. However, this ratio is not yet a routine clinical parameter due to the analytically challenging interconversion of reduced (free) glutathione to oxidized (bound) glutathione. We aimed to facilitate this ratio determination in order to aid its incorporation as a routine clinical parameter. To this end, we developed a simple derivatization route that yields different isotopologues of N-ethylmaleimide alkylated glutathione from reduced and oxidized glutathione (after its chemical reduction) for mass spectrometric analysis. A third isotopologue can be used as isotopic standard for simultaneous absolute quantification. As all isotopologues have similar chromatographic properties, matrix effects arising from different sample origins can only impact method sensitivity but not quantification accuracy. Robustness, simplified data analysis, cost effectiveness by one common standard, and highly improved mass spectrometric sensitivity by conversion of oxidized glutathione to an alkylated glutathione isotopologue are the main advantages of our approach. We present a method fully optimized for blood, plasma, serum, cell, and tissue samples. In addition, we propose production of N-ethylmaleimide customized blood collection tubes to even further facilitate the analysis in a clinical setting.
Nidulantes of Aspergillus (Formerly Emericella): A Treasure Trove of Chemical Diversity and Biological Activities
Authors: Alburae Najla Ali , Mohammed Afrah E. , Alorfi Hajer Saeed , Turki Adnan Jaman , Asfour Hani Zakaria , Alarif Walied Mohamed , Abdel-Lateff Ahmed
Published: February 2020

The genus Emericella (Ascomycota) includes more than thirty species with worldwide distribution across many ecosystems. It is considered a rich source of diverse metabolites. The published classes of natural compounds that are discussed here are organized according to the following biosynthetic pathways: polyketides (azaphilones, cyclopentenone pigments, dicyanides, furan derivatives, phenolic ethers, and xanthones and anthraquinones); shikimate derivatives (bicoumarins); mevalonate derivatives (meroterpenes, sesquiterpenes, sesterterpenes and steroids) and amino acids derivatives (alkaloids (indole-derivatives, isoindolones, and piperazine) and peptides (depsipeptides)). These metabolites produce the wide array of biological effects associated with Emericella, including antioxidant, antiproliferative, antimalarial, antiviral, antibacterial, antioxidant, antihypertensive, anti-inflammatory, antifungal and kinase inhibitors. Careful and extensive study of the diversity and distribution of metabolites produced by the genus Emericella (either marine or terrestrial) revealed that, no matter the source of the fungus, the composition of the culture medium effectively controls the metabolites produced. The topic of this review is the diversity of metabolites that have been identified from Emericella, along with the contextual information on either their biological or geographic sources. This review presents 236 natural compounds, which were reported from marine and terrestrial Emericella. Amongst the reported compounds, only 70.2% were biologically assayed for their effects, including antimicrobial or cytotoxicity. This implies the need for substantial investigation of alternative activities. This review includes a full discussion of compound structures and disease management, based on materials published from 1982 through December 2019.
Absolute Quantification of the Central Carbon Metabolome in Eight Commonly Applied Prokaryotic and Eukaryotic Model Systems
Authors: Røst Lisa M. , Brekke Thorfinnsdottir Lilja , Kumar Kanhaiya , Fuchino Katsuya , Eide Langørgen Ida , Bartosova Zdenka , Kristiansen Kåre Andre , Bruheim Per
Published: February 2020

Absolute quantification of intracellular metabolite pools is a prerequisite for modeling and in-depth biological interpretation of metabolomics data. It is the final step of an elaborate metabolomics workflow, with challenges associated with all steps—from sampling to quantifying the physicochemically diverse metabolite pool. Chromatographic separation combined with mass spectrometric (MS) detection is the superior platform for high coverage, selective, and sensitive detection of metabolites. Herein, we apply our quantitative MS-metabolomics workflow to measure and present the central carbon metabolome of a panel of commonly applied biological model systems. The workflow includes three chromatographic methods combined with isotope dilution tandem mass spectrometry to allow for absolute quantification of 68 metabolites of glycolysis, the pentose phosphate pathway, the tricarboxylic acid cycle, and the amino acid and (deoxy) nucleoside pools. The biological model systems; Bacillus subtilis, Saccharomyces cerevisiae, two microalgal species, and four human cell lines were all cultured in commonly applied culture media and sampled in exponential growth phase. Both literature and databases are scarce with comprehensive metabolite datasets, and existing entries range over several orders of magnitude. The workflow and metabolite panel presented herein can be employed to expand the list of reference metabolomes, as encouraged by the metabolomics community, in a continued effort to develop and refine high-quality quantitative metabolomics workflows.
LAMA-1: A Cerebroside Isolated from the Deep-Sea-Derived Fungus Penicillium chrysogenum
Authors: Alshehri Samah O. , Malatani Rania T. , Bogari Hanin A. , Noor Ahmad O. , Ibrahim Amany K. , Elhady Sameh S. , Abdelhameed Reda F. A.
Published: February 2020

Chemical investigation of the ethyl acetate extract of Penicillium chrysogenum strain S003, a fungus isolated from Red Sea deep sediment, led to the isolation of a cerebroside molecular species LAMA (1) along with three other known compounds, ergosterol (2), epidioxyergosterol (3), and kojic acid (4). The structures of the isolated compounds were elucidated by interpretation of spectral data, including detailed 1D and 2D NMR (One and two dimensional Nuclear Magnetic Resonance) and mass spectrometry. The cytotoxic activities of isolated compounds 1–4 against five human carcinoma cells were evaluated using sulforhodamine B (SRB) assay. Compounds 2 and 3 displayed promising cytotoxic profiles against lung cancer (A-549), prostate (DU-145), breast adenocarcinoma (MCF-7), and hepatocellular (HepG2) cell lines, with IC50 values of 21.26, 19.3; 1.50, 6.10; 16.95, 13.6; and 2.89, 3.07 µM, respectively, while they were inactive against HeLa cells. Compounds 1 and 4 showed weak cytotoxic profiles against all cell lines under investigation.
Metabolic Changes in Synaptosomes in an Animal Model of Schizophrenia Revealed by 1H and 1H,13C NMR Spectroscopy
Authors: Barnett Brian R. , Fathi Fariba , Falco Cobra Paulo , Yi Sue Y. , Anderson Jacqueline M. , Eghbalnia Hamid R. , Markley John L. , Yu John-Paul J.
Published: February 2020

Synaptosomes are isolated nerve terminals that contain synaptic components, including neurotransmitters, metabolites, adhesion/fusion proteins, and nerve terminal receptors. The essential role of synaptosomes in neurotransmission has stimulated keen interest in understanding both their proteomic and metabolic composition. Mass spectrometric (MS) quantification of synaptosomes has illuminated their proteomic composition, but the determination of the metabolic composition by MS has been met with limited success. In this study, we report a proof-of-concept application of one- and two-dimensional nuclear magnetic resonance (NMR) spectroscopy for analyzing the metabolic composition of synaptosomes. We utilize this approach to compare the metabolic composition synaptosomes from a wild-type rat with that from a newly generated genetic rat model (Disc1 svΔ2), which qualitatively recapitulates clinically observed early DISC1 truncations associated with schizophrenia. This study demonstrates the feasibility of using NMR spectroscopy to identify and quantify metabolites within synaptosomal fractions.
Analysis of the Complete Genome of the Alkaliphilic and Phototrophic Firmicute Heliorestis convoluta Strain HHT
Authors: Dewey Emma D. , Stokes Lynn M. , Burchell Brad M. , Shaffer Kathryn N. , Huntington Austin M. , Baker Jennifer M. , Nadendla Suvarna , Giglio Michelle G. , Bender Kelly S. , Touchman Jeffrey W. , Blankenship Robert E. , Madigan Michael T. , Sattley W. Matthew
Published: February 2020

Despite significant interest and past work to elucidate the phylogeny and photochemistry of species of the Heliobacteriaceae, genomic analyses of heliobacteria to date have been limited to just one published genome, that of the thermophilic species Heliobacterium (Hbt.) modesticaldum str. Ice1T. Here we present an analysis of the complete genome of a second heliobacterium, Heliorestis (Hrs.) convoluta str. HHT, an alkaliphilic, mesophilic, and morphologically distinct heliobacterium isolated from an Egyptian soda lake. The genome of Hrs. convoluta is a single circular chromosome of 3.22 Mb with a GC content of 43.1% and 3263 protein-encoding genes. In addition to culture-based observations and insights gleaned from the Hbt. modesticaldum genome, an analysis of enzyme-encoding genes from key metabolic pathways supports an obligately photoheterotrophic lifestyle for Hrs. convoluta. A complete set of genes encoding enzymes for propionate and butyrate catabolism and the absence of a gene encoding lactate dehydrogenase distinguishes the carbon metabolism of Hrs. convoluta from its close relatives. Comparative analyses of key proteins in Hrs. convoluta, including cytochrome c553 and the Fo alpha subunit of ATP synthase, with those of related species reveal variations in specific amino acid residues that likely contribute to the success of Hrs. convoluta in its highly alkaline environment.
Pesticides Decrease Bacterial Diversity and Abundance of Irrigated Rice Fields
Authors: Onwona-Kwakye Michael , Plants-Paris Kimberly , Keita Kadiatou , Lee Jessica , Brink Paul J. Van den , Hogarh Jonathan N. , Darkoh Charles
Published: February 2020

Bacteria play an important role in soil ecosystems and their activities are crucial in nutrient composition and recycling. Pesticides are extensively used in agriculture to control pests and improve yield. However, increased use of pesticides on agricultural lands results in soil contamination, which could have adverse effect on its bacterial communities. Here, we investigated the effect of pesticides commonly used on irrigated rice fields on bacterial abundance and diversity. Irrigated soil samples collected from unexposed, pesticide-exposed, and residual exposure areas were cultured under aerobic and anaerobic conditions. DNA was extracted and analysed by 16S rRNA sequencing. The results showed overall decrease in bacterial abundance and diversity in areas exposed to pesticides. Operational taxonomic units of the genera Enterobacter, Aeromonas, Comamonas, Stenotrophomonas, Bordetella, and Staphylococcus decreased in areas exposed to pesticides. Conversely, Domibacillus, Acinetobacter, Pseudomonas, and Bacillus increased in abundance in pesticide-exposed areas. Simpson and Shannon diversity indices and canonical correspondence analysis demonstrated a decrease in bacterial diversity and composition in areas exposed to pesticides. These results suggest bacteria genera unaffected by pesticides that could be further evaluated to identify species for bioremediation. Moreover, there is a need for alternative ways of improving agricultural productivity and to educate farmers to adopt innovative integrated pest management strategies to reduce deleterious impacts of pesticides on soil ecosystems.
Allium ursinum and Allium oschaninii against Klebsiella pneumoniae and Candida albicans Mono- and Polymicrobic Biofilms in In Vitro Static and Dynamic Models
Authors: Galdiero Emilia , Di Onofrio Valeria , Maione Angela , Gambino Edvige , Gesuele Renato , Menale Bruno , Ciaravolo Martina , Carraturo Federica , Guida Marco
Published: February 2020

The present study assesses the in vitro antibiofilm potential activity of extracts of wild Allium ursinum and Allium oschaninii. The active ingredients of the extracts were obtained with a technique named Naviglio (rapid solid–liquid dynamic extraction, RSLDE) which is based on an innovative and green solid–liquid extraction methodology. The extracts were tested against models of mono- and polymicrobial biofilm structures of clinically antibiotic-resistant pathogens, Klebsiella pneumoniae ATCC 10031 and Candida albicans ATCC 90028. Biofilms were studied using a static and a dynamic model (microtiter plates and a CDC reactor) on three different surfaces reproducing what happens on implantable medical devices. Antimicrobic activities were determined through minimum inhibitory concentration (MIC), while antibiofilm activity was assessed by minimum biofilm eradication concentration (MBEC) using a crystal violet (CV) biofilm assay and colony forming unit (CFU) counts. Results showed that both Allium extracts eradicated biofilms of the tested microorganisms well; biofilms on Teflon were more susceptible to extracts than those on polypropylene and polycarbonate, suggesting that when grown on a complex substrate, biofilms may be more tolerant to antibiotics. Our data provide significant advances on antibiotic susceptibility testing of biofilms grown on biologically relevant materials for future in vitro and in vivo applications.
Genesis of Volcanic Rocks in the Zijinshan Ore District, SE China: Implications for Porphyry-Epithermal Mineralization
Authors: Feng Zheng-Zheng , Bai Zhong-Jie , Zhong Hong , Zhu Wei-Guang , Zheng Shi-Ji
Published: February 2020

Volcanic rocks, as the extrusive counterparts of the mineralized intrusions, can provide important information on the magma source, petrogenesis, and metallogenic conditions of the coeval porphyry-epithermal system. Shanghang Basin volcanic rocks are spatially and temporally related to a series of adjacent porphyry-epithermal Cu–Au deposits, and they can be used as a window to study the related deposits. Two laser-ablation–inductively coupled plasma–mass spectrometry zircon U–Pb analyses of the volcanic rocks yield weighted mean ages of ~105 Ma, identical to the age of the coeval porphyry-epithermal mineralization. Rocks have SiO2 contents of 55.4 to 74.8 wt % and belong to the high-K to shoshonitic series, characterized by strong differentiation of light rare-earth elements (REEs) relative to heavy REEs (mean LaN/YbN = 16.88); enrichment in light REEs, Rb, Th, and U; and depletion in Nb, Ta, Zr, Hf, and Ti. The volcanic rocks display (87Sr/86Sr)i values of 0.709341 to 0.711610, εNd(t) values of −6.9 to −3.3 εHf(t) values of −3.95 to −0.30, and δ18O values of 6.07‰–6.79‰, suggesting that the parental magmas were derived from a mantle source enriched by subduction-related progress. SiO2 content shows a strong negative correlation with the contents of some major and trace elements, indicating that fractional crystallization played an important role in the generation of these rocks. A binary mixing model of Hf–O isotopes gives an estimated degree of crustal contamination of 30%. In addition, magnetite crystallized early, and the samples showed high zircon EuN/EuN* values (0.48–0.68), indicating that the parental magma had a high oxygen fugacity. The inferred suppression of plagioclase crystallization and increasing hornblende crystallization during magma evolution suggest that the magma was water rich. The high-water content and high oxygen fugacity of the magma promoted the dissolving of sulfides containing Cu and Au in the source area and contributed to the migration of ore-forming elements.
Volcanic and Saline Lithium Inputs to the Salar de Atacama
Authors: Godfrey Linda , Álvarez-Amado Fernanda
Published: February 2020

The Li-rich brine contained within the halite body of the Salar de Atacama is uncommon for two reasons: First, it has an exceptionally high Li concentration, even compared to other closed basins in the Li triangle of South America; and second, it is widespread within the halite nucleus and not restricted to a localized area. This study focusses on the southern half of the salar where Li production occurs and draws comparisons with its northern neighboring basin through which the Loa river flows. Concentration and isotope data for water inflowing to this part of the salar were obtained from surface inflow as well as wells located within the alluvial fans on its eastern margin. Lithium varies between 0.2 and 20 mg/L before reaching the salar where small amounts of the brine and or salts that precipitated from it can increase its concentration up to 400 mg/L or higher. The δ7Li of the inflow water varies between +4.9‰ and +11.2‰ and increases to +12.6‰ within the salar margin, consistent with salar brine based on reported measurements. Boron isotopes indicate that it is unlikely that solutes are derived from sedimentary evaporites or mineral cements, unlike the situation in the adjacent Loa basin. Water that flows through an aquifer laterally confined by a basement block and a line of volcanoes has a notably higher δ7Li than other inflow water, around +9‰, and increasing to +10.5‰. δ7Li values are overall higher than were measured in the adjacent Loa basin, indicating that here the water–rock reactions for Li are more evolved due to longer residence times. Lithium concentrations increased with sodium and chloride, but sedimentary evaporites are shown to be unimportant from δ11B. This is accounted for two ways: evaporated saline inflow leaks from higher elevation basins and inflows are partly derived from or modified by active volcanic systems. Active and dormant volcanoes plus the massive Altiplano–Puna magmatic body are important as heat sources, which enhance water–rock reactions. The large topographic difference between the mean elevation of Altiplano on which these volcanoes sit and the salar surface allows hydrothermal fluids, which would otherwise stay deep below the surface under the modern arc, to uplift at the salar.
Ultrafast Elemental Mapping of Platinum Group Elements and Mineral Identification in Platinum-Palladium Ore Using Laser Induced Breakdown Spectroscopy
Authors: Rifai Kheireddine , Özcan Lütfü-Çelebi , Doucet François R. , Rhoderick Kyle , Vidal François
Published: February 2020

This paper demonstrates the capability of performing an ultrafast chemical mapping of drill cores collected from a platinum/palladium mine using laser-induced breakdown spectroscopy (LIBS). A scan of 40 mm × 30 mm was performed, using a commercial LIBS analyzer, onto the flat surface of a drill core with a scanning speed of 1000 Hz, and a spatial resolution of 50 µm, in about 8 min. Maps of the scanned areas for seven chemical elements (platinum, palladium, nickel, copper, iron, silicon, and magnesium), as well as a single map including the seven elements altogether, were then generated using the proprietary software integrated into the LIBS analyzer. Based on the latter image, seven minerals were identified using the principal component analysis (PCA) and correlations with the elemental maps.
High-Performance Ultraviolet Photodetector Based on a Zinc Oxide Nanoparticle@Single-Walled Carbon Nanotube Heterojunction Hybrid Film
Authors: Choi Myung-Soo , Park Taehyun , Kim Woo-Jae , Hur Jaehyun
Published: February 2020

A hybrid film consisting of zinc oxide nanoparticles (ZnO NPs) and carbon nanotubes (CNTs) is formed on a glass substrate using a simple and swift spin coating process for the use in ultraviolet photodetectors (UV PDs). The incorporation of various types of CNTs into ZnO NPs (ZnO@CNT) enhances the performance of UV PDs with respect to sensitivity, photoresponse, and long-term operation stability when compared with pristine ZnO NP films. In particular, the introduction of single-walled CNTs (SWNTs) exhibits a superior performance when compared with the multiwalled CNTs (MWNTs) because SWNTs can not only facilitate the stability of free electrons generated by the O2 desorption on ZnO under UV irradiation owing to the built-in potential between ZnO and SWNT heterojunctions, but also allow facile and efficient transport pathways for electrons through SWNTs with high aspect ratio and low defect density. Furthermore, among the various SWNTs (arc-discharged (A-SWNT), Hipco (H-SWNT), and CoMoCat (C-SWNT) SWNTs), we demonstrate the ZnO@A-SWNT hybrid film exhibits the best performance because of higher conductivity and aspect ratio in A-SWNTs when compared with those of other types of SWNTs. At the optimized conditions for the ZnO@A-SWNT film (ratio of A-SWNTs and ZnO NPs and electrode distance), ZnO@A-SWNT displays a sensitivity of 4.9 × 103 % with an on/off current ratio of ~104 at the bias of 2 V under the UV wavelength of 365 nm (0.47 mW/cm2). In addition, the stability in long-term operation and photoresponse time are significantly improved by the introduction of A-SWNTs into the ZnO NP film when compared with the bare ZnO NPs film.
Synthesis, Cytotoxicity Assessment and Optical Properties Characterization of Colloidal GdPO4:Mn2+, Eu3+ for High Sensitivity Luminescent Nanothermometers Operating in the Physiological Temperature Range
Authors: Maciejewska Kamila , Poźniak Blazej , Tikhomirov Marta , Kobylińska Adrianna , Marciniak Łukasz
Published: February 2020

Herein, a novel synthesis method of colloidal GdPO4:Mn2+,Eu3+ nanoparticles for luminescent nanothermometry is proposed. XRD, TEM, DLS, and zeta potential measurements confirmed the crystallographic purity and reproducible morphology of the obtained nanoparticles. The spectroscopic properties of GdPO4:Mn2+,Eu3+ with different amounts of Mn2+ and Eu3+ were analyzed in a physiological temperature range. It was found that GdPO4:1%Eu3+,10%Mn2+ nanoparticles revealed extraordinary performance for noncontact temperature sensing with relative sensitivity SR = 8.88%/°C at 32 °C. Furthermore, the biocompatibility and safety of GdPO4:15%Mn2+,1%Eu3+ was confirmed by cytotoxicity studies. These results indicated that colloidal GdPO4 doped with Mn2+ and Eu3+ is a very promising candidate as a luminescent nanothermometer for in vitro applications.
Is Abdominal Fat Distribution Associated with Chronotype in Adults Independently of Lifestyle Factors?
Authors: De Amicis Ramona , Galasso Letizia , Leone Alessandro , Vignati Laila , De Carlo Giulia , Foppiani Andrea , Montaruli Angela , Roveda Eliana , Cè Emiliano , Esposito Fabio , Vanzulli Angelo , Battezzati Alberto , Bertoli Simona
Published: February 2020

Both abdominal obesity and its visceral component are independently associated with cardiometabolic diseases. Among the non-modifiable and modifiable determinants, lifestyle plays a central role, while chronotype is an emerging factor. Evening type (E-Type), more active and efficient in the last part of the day, has been associated with a health-impairing style, resulting in a higher risk of obesity and cardiometabolic diseases than morning type (M-Type). However, no study has examined the contribution of chronotype to abdominal fat distribution, even considering adherence to the Mediterranean diet (MD). We conducted a cross-sectional study on 416 adults (69.5% females, 50 ± 13 years). Waist circumference (WC), visceral fat (VAT) using ultrasonography, chronotype through the reduced Morningness-Eveningness Questionnaire (rMEQ), and adherence to MD were studied. Our results showed no differences in WC and VAT between chronotypes. However, adherence to MD resulted significantly lower in the E-Types compared to M-Types. WC decreased with increasing Mediterranean score and rMEQ score, and VAT decreased with increasing rMEQ score, indicating that E-Types have +2 cm of WC and +0.5 cm of VAT compared to M-Types. In conclusion, these results showed that chronotype is independently associated with abdominal obesity and visceral fat, underlining the potential implications of the individual circadian typology on abdominal obesity.
Pulse Crop Effects on Gut Microbial Populations, Intestinal Function, and Adiposity in a Mouse Model of Diet-Induced Obesity
Authors: McGinley John , Fitzgerald Vanessa , Neil Elizabeth , Omerigic Heather , Heuberger Adam , Weir Tiffany , McGee Rebecca , Vandemark George , Thompson Henry
Published: February 2020

The dietary fiber gap that is present in many countries co-exists with a low intake of grain legumes (pulses) that have 2–3 times more dietary fiber than cereal grains that are commonly recommended to increase fiber intake. Given the relationships among dietary fiber, gut health and chronic disease risk, a study was undertaken in a preclinical mouse model for obesity to examine how commonly consumed pulses, i.e., chickpea, common bean, dry pea and lentil, would impact gut microbes, intestinal function, and adiposity. Pulses were fed to C57BL/6 mice at similar levels of protein and fiber. Bacterial count in the cecum was elevated 3-fold by pulse consumption. At the phylum level, a 2.2- to 5-fold increase in Bacteriodetes relative to Firmicutes was observed. For Akkermansia muciniphila, a health-beneficial bacterium, differential effects were detected among pulses ranging from no effect to a 49-fold increase. Significant differences among pulses in biomarkers of intestinal function were not observed. Pulses reduced accumulation of lipid in adipose tissue with a greater reduction in the subcutaneous versus visceral depots. Metabolomics analysis indicated that 108 metabolites were highly different among pulse types, and several compounds are hypothesized to influence the microbiome. These results support recent recommendations to increase consumption of pulse-based foods for improved health, although all pulses were not equal in their effects.