bluuebunny/crossref_metadata_2025 huggingface dataset:
A Single Gene Expression Set Derived from Artificial Intelligence Predicted the Prognosis of Several Lymphoma Subtypes; and High Immunohistochemical Expression of TNFAIP8 Associated with Poor Prognosis in Diffuse Large B-Cell Lymphoma
Authors: Carreras Joaquim , Kikuti Yara Y. , Miyaoka Masashi , Hiraiwa Shinichiro , Tomita Sakura , Ikoma Haruka , Kondo Yusuke , Ito Atsushi , Shiraiwa Sawako , Hamoudi Rifat , Ando Kiyoshi , Nakamura Naoya
Published: July 2020

Objective: We have recently identified using multilayer perceptron analysis (artificial intelligence) a set of 25 genes with prognostic relevance in diffuse large B-cell lymphoma (DLBCL), but the importance of this set in other hematological neoplasia remains unknown. Methods and Results: We tested this set of genes (i.e., ALDOB, ARHGAP19, ARMH3, ATF6B, CACNA1B, DIP2A, EMC9, ENO3, GGA3, KIF23, LPXN, MESD, METTL21A, POLR3H, RAB7A, RPS23, SERPINB8, SFTPC, SNN, SPACA9, SWSAP1, SZRD1, TNFAIP8, WDCP and ZSCAN12) in a large series of gene expression comprised of 2029 cases, selected from available databases, that included chronic lymphocytic leukemia (CLL, n = 308), mantle cell lymphoma (MCL, n = 92), follicular lymphoma (FL, n = 180), DLBCL (n = 741), multiple myeloma (MM, n = 559) and acute myeloid leukemia (AML, n = 149). Using a risk-score formula we could predict the overall survival of the patients: the hazard-ratio of high-risk versus low-risk groups for all the cases was 3.2 and per disease subtype were as follows: CLL (4.3), MCL (5.2), FL (3.0), DLBCL not otherwise specified (NOS) (4.5), multiple myeloma (MM) (5.3) and AML (3.7) (all p values < 0.000001). All 25 genes contributed to the risk-score, but their weight and direction of the correlation was variable. Among them, the most relevant were ENO3, TNFAIP8, ATF6B, METTL21A, KIF23 and ARHGAP19. Next, we validated TNFAIP8 (a negative mediator of apoptosis) in an independent series of 97 cases of DLBCL NOS from Tokai University Hospital. The protein expression by immunohistochemistry of TNFAIP8 was quantified using an artificial intelligence-based segmentation method and confirmed with a conventional RGB-based digital quantification. We confirmed that high protein expression of TNFAIP8 by the neoplastic B-lymphocytes associated with a poor overall survival of the patients (hazard-risk 3.5; p = 0.018) as well as with other relevant clinicopathological variables including age >60 years, high serum levels of soluble IL2RA, a non-GCB phenotype (cell-of-origin Hans classifier), moderately higher MYC and Ki67 (proliferation index), and high infiltration of the immune microenvironment by CD163-positive tumor associated macrophages (CD163+TAMs). Conclusion: It is possible to predict the prognosis of several hematological neoplasia using a single gene-set derived from neural network analysis. High expression of TNFAIP8 is associated with poor prognosis of the patients in DLBCL.
Evolution of the Teaching of Animal Welfare Science, Ethics and Law in European Veterinary Schools (2012–2019)
Authors: De Briyne Nancy , Vidović Jovana , Morton David B. , Magalhães-Sant’Ana Manuel
Published: July 2020

Nowadays, animal welfare is seen as a ‘common good’ and a societal expectation. Veterinarians are expected to promote and ensure the welfare of animals under their care by using their scientific knowledge and skills in ethical reasoning and advocacy. Veterinary education must equip veterinary graduates with the necessary competences to fulfil these roles. In 2013, the Federation of Veterinarians of Europe (FVE) and the European Association of Establishment of Veterinary Education (EAEVE) adopted the Day-1 competences on animal welfare science, ethics and law for veterinary undergraduate education after having surveyed European veterinary schools in 2012. In 2019, the FVE carried out a follow-up survey to monitor the evolution of animal welfare teaching in Europe. A total of 82 responses were received, representing 57 faculties from 25 European countries. Overall results showed that the teaching of animal welfare science, ethics and law has increased in response to growing societal needs, and that welfare is more and more internally embedded in the profession, which is reflected in the curriculum. Nevertheless, at least one quarter of European schools still only partially meet the 2013 Day-1 competencies. This indicates the need for greater efforts, both from the EAEVE and from individual schools, to ensure that the teaching of animal welfare across Europe is standardised.
Mass Production of the Black Soldier Fly, Hermetia illucens (L.), (Diptera: Stratiomyidae) Reared on Three Manure Types
Authors: Miranda Chelsea D. , Cammack Jonathan A. , Tomberlin Jeffery K.
Published: July 2020

Recent interest in the mass production of black soldier fly (BSF) larvae has resulted in many studies being generated. However, a majority of the studies are benchtop, or small-scale, experiments. Results generated from such studies may not translate to large-scale/industrial production. The current study was conducted at a conventional large-scale (10,000 larvae/treatment fed seven kg) to determine the impact on selected life-history traits when BSF were fed seven kg of manure (swine, dairy, or poultry) or a control diet (Gainesville diet: 50% wheat bran, 30% alfalfa meal, and 20% corn). Results showed larvae fed dairy manure took one to two days longer to develop to prepupation, with lower survivorship (45%) compared to those fed poultry or swine manure (>70%). Furthermore, the maximum larval weight was reached on day six for those fed swine manure, while other treatments achieved the maximum weight on day seven. However, larvae fed swine manure averaged 150 mg, while those fed the other diets ranged between 175 and 200 mg. Data from this study may be valuable for the industrialization of BSF. Companies using a scale varying from previously published work, including this study, should conduct pilot studies to optimize their system prior to implementation.
Effect of an Outdoor Access System on the Growth Performance, Carcass Characteristics, and Longissimus lumborum Muscle Meat Quality of the Prestice Black-Pied Pig Breed
Authors: Dostálová Anne , Svitáková Alena , Bureš Daniel , Vališ Libor , Volek Zdeněk
Published: July 2020

The effect of an outdoor-access vs. conventional indoor system on the growth, carcass characteristics, and longissimus lumborum muscle (LL) meat quality was evaluated in 24 Prestice Black-Pied pigs, during the growing-finishing period. Two groups received the same complete diet and were housed separately under conventional indoor conditions, with only one group having full access to pasture (350 m2/pig). The animals showed acceptable growth rates (outdoor vs. indoor, average of 740 g/d vs. 700 g/d), feed intake (average of 2700 g/d), and feed conversion ratios (FCR) (average of 3.3 vs. 3.5). The rearing system significantly affected the fatty acid composition of the LL. Outdoor pigs had lower ratios of n − 6/n − 3 polyunsaturated fatty acids, saturation indexes, atherogenic indexes, and thrombogenic indexes, compared with indoor-raised pigs. No differences were recorded in carcass characteristics, physical meat quality traits (pH45, pH24, drip loss, water holding capacity), or the chemical composition of the meat (crude protein, cholesterol, intramuscular fat, hydroxyproline, and tocopherol). The sensory analysis of grilled LL muscle found that outdoor pigs received lower evaluation scores for tenderness, juiciness, and chewiness, but had a better overall acceptance compared to pigs reared indoors.
Toxoplasma gondii Recombinant Antigens in the Serodiagnosis of Toxoplasmosis in Domestic and Farm Animals
Authors: Ferra Bartłomiej , Holec-Gąsior Lucyna , Grąźlewska Weronika
Published: July 2020

Toxoplasmosis is caused by an intracellular protozoan, Toxoplasma gondii, and is a parasitic disease that occurs in all warm-blooded animals, including humans. Toxoplasmosis is one of the most common parasitic diseases of animals and results in reproductive losses. Toxoplasmosis in humans is usually caused by eating raw or undercooked meat or consuming dairy products containing the parasite. Diagnosis of toxoplasmosis is currently based on serological assays using native antigens to detect specific anti-T. gondii antibodies. Due to the high price, the available commercial agglutination assays are not suited to test a large number of animal serum samples. The recent development of proteomics elucidated the antigenic structure of T. gondii and enabled the development of various recombinant antigens that can be used in new, cheaper, and more effective diagnostic tools. Continuous development of scientific disciplines, such as molecular biology and genetic engineering, allows for the production of new recombinant antigens and provides the basis for new diagnostic tests for the detection of anti-T. gondii antibodies in animal serum samples.
Statistical Analysis of the CO2 and CH4 Annual Cycle on the Northern Plateau of the Iberian Peninsula
Authors: Pérez Isidro A. , Sánchez M. Luisa , García M. Ángeles , Pardo Nuria , Fernández-Duque Beatriz
Published: July 2020

Outliers are frequent in CO2 and CH4 observations at rural sites. The aim of this paper is to establish a procedure based on the lag-1 autocorrelation to form measurement groups, some of which include outliers, and the rest include regular measurements. Once observations are classified, a second objective is to determine the number of harmonics in order to suitably describe the annual evolution of both gases. Monthly CO2 and CH4 percentiles were calculated over a six-year period. Linear trends for most of the percentiles were around 2.24 and 0.0097 ppm year−1, and the interquartile ranges of residuals calculated from detrended concentrations were 6 and 0.02 ppm for CO2 and CH4, respectively. Five concentration groups were proposed for CO2 and six were proposed for CH4 from the lag-1 autocorrelation applied to detrended observations. Monthly medians were calculated in each group, and combinations of harmonics were applied in an effort to fit the annual cycle. Finally, adding annual and semi-annual harmonics successfully described the cycle where one step was observed in the concentration decrease in spring, not only for high CO2 percentiles but also for low CH4 percentiles.
End of the Day (EOD) Judgment for Daily Rain-Gauge Data
Authors: Yatagai Akiyo , Maeda Mio , Khadgarai Sunilkumar , Masuda Minami , Xie Pingping
Published: July 2020

Several versions of Asian Precipitation-Highly-Resolved Observational Data Integration Towards Evaluation of Extreme Events (APHRODITE-2) have been released for analyzing rain-gauge-based daily precipitation. APHRODITE-2 constitutes an improvement compared with the previous versions for evaluating extreme precipitation. One advantage of APHRODITE-2 products (versions 1801R1 and 1901) over APHRODITE-1 products is the ability to ensure uniformity in the daily accumulation period (end of the day, EOD) used in a specific domain. To create these EOD segregated or EOD adjusted products, we applied an EOD judgment scheme using multi-satellite merged precipitation products CMORPH V1.0 and ERA-Interim reanalysis. The novelty of the current methodology was tested against rain-gauge datasets with known EOD information. Despite the difference in horizontal resolution, ERA-Interim shows similar EOD detection performance to CMORPH. However, CMORPH showed better performance over India than ERA-Interim. The current method has potential to judge EOD of rain-gauge station data with an unknown observation time. Having prior EOD information as metadata is very important for gridded datasets as well as station data. Here, we also present deterministic/estimated EOD that we used for V1801R1 over Monsoon Asia.
Systemic Treatment Selection for Patients with Advanced Pancreatic Neuroendocrine Tumours (PanNETs)
Authors: Megdanova-Chipeva Vera G. , Lamarca Angela , Backen Alison , McNamara Mairéad G. , Barriuso Jorge , Sergieva Sonia , Gocheva Lilia , Mansoor Was , Manoharan Prakash , Valle Juan W.
Published: July 2020

Pancreatic neuroendocrine tumours (PanNETs) are rare diseases and a good example of how research is not only feasible, but also of crucial importance in the scenario of rare tumours. Many clinical trials have been performed over the past two decades expanding therapeutic options for patients with advanced PanNETs. Adequate management relies on optimal selection of treatment, which may be challenging for clinicians due to the fact that multiple options of therapy are currently available. A number of therapies already exist, which are supported by data from phase III studies, including somatostatin analogues and targeted therapies (sunitinib and everolimus). In addition, chemotherapy remains an option, with temozolomide and capecitabine being one of the most popular doublets to use. Peptide receptor radionuclide therapy was successfully implemented in patients with well-differentiated gastro-entero-pancreatic neuroendocrine tumours, but with certain questions waiting to be solved for the management of PanNETs. Finally, the role of immunotherapy is still poorly understood. In this review, the data supporting current systemic treatment options for locally advanced or metastatic PanNETs are summarized. Strategies for treatment selection in patients with PanNETs based on patient, disease, or drug characteristics is provided, as well as a summary of current evidence on prognostic and predictive biomarkers. Future perspectives are discussed, focusing on current and forthcoming challenges and unmet needs of patients with these rare tumours.
Ralaniten Sensitizes Enzalutamide-Resistant Prostate Cancer to Ionizing Radiation in Prostate Cancer Cells that Express Androgen Receptor Splice Variants
Authors: Banuelos Carmen A. , Ito Yusuke , Obst Jon K. , Mawji Nasrin R. , Wang Jun , Hirayama Yukiyoshi , Leung Jacky K. , Tam Teresa , Tien Amy H. , Andersen Raymond J. , Sadar Marianne D.
Published: July 2020

Blocking androgen receptor (AR) transcriptional activity by androgen deprivation therapy (ADT) improves the response to radiotherapy for intermediate and high risk prostate cancer. Unfortunately, ADT, antiandrogens, and abiraterone increase expression of constitutively active splice variants of AR (AR-Vs) which regulate DNA damage repair leading to resistance to radiotherapy. Here we investigate whether blocking the transcriptional activities of full-length AR and AR-Vs with ralaniten leads to enhanced sensitivity to radiotherapy. Combination therapies using ralaniten with ionizing radiation were evaluated for effects on proliferation, colony formation, cell cycle, DNA damage, and Western blot analyses in human prostate cancer cells that express both full-length AR and AR-Vs. Ralaniten and a potent next-generation analog (EPI-7170) decreased expression of DNA repair genes whereas enzalutamide had no effect. FACS analysis revealed a dose-dependent decrease of BrdU incorporation with increased accumulation of γH2AX with a combination of ionizing radiation with ralaniten. An additive inhibitory effect on proliferation of enzalutamide-resistant cells was achieved with a combination of ralaniten compounds with ionizing radiation. Ralaniten and EPI-7170 sensitized prostate cancer cells that express full-length AR and AR-Vs to radiotherapy whereas enzalutamide had no added benefit.
Immune Suppressive Effects of Plasma-Derived Exosome Populations in Head and Neck Cancer
Authors: Beccard Inga J. , Hofmann Linda , Schroeder Jan C. , Ludwig Sonja , Laban Simon , Brunner Cornelia , Lotfi Ramin , Hoffmann Thomas K. , Jackson Edwin K. , Schuler Patrick J. , Theodoraki Marie-Nicole
Published: July 2020

Plasma-derived exosomes of head and neck squamous cell carcinoma (HNSCC) patients carry inhibitory factors mediating immune suppression. Separation of tumor-derived exosomes (TEX) and non-TEX may assist in a better understanding of their respective parental cells. Here, we evaluate the impact of TEX or hematopoietic-derived exosomes on immune suppression. We evaluated apoptosis in CD8+ T cells, conversion of CD4+ T cells to regulatory T cells (Treg), and adenosine production by TEX, non-TEX, or total exosomes. Exosome protein cargo was significantly higher in total and CD45(−) exosomes from high stage compared to low stage patients. Furthermore, total and CD45(−) exosomes of high stage patients induced more apoptosis in CD8+ T cells than their low stage counterparts. CD69 suppression, a marker of reduced CD8+ T cell activation, was only mediated by CD45(−) exosomes. All fractions induced Treg differentiation, defined by CD39 expression, but only CD45(−) exosomes showed a stage-dependent conversion. CD45(−) exosomes produced higher adenosine concentrations than CD45(+) exosomes, concluding that adenosine production measured in total exosomes mainly derives from TEX. The presented results show significant induction of immune suppression by TEX in HNSCC. This immunosuppressive effect supports the potential role of exosomes as liquid biomarkers for disease stage and level of immune suppression.
The Role of Alkali and Alkaline Earth Metals in the CO2 Methanation Reaction and the Combined Capture and Methanation of CO2
Authors: Tsiotsias Anastasios I. , Charisiou Nikolaos D. , Yentekakis Ioannis V. , Goula Maria A.
Published: July 2020

CO2 methanation has great potential for the better utilization of existing carbon resources via the transformation of spent carbon (CO2) to synthetic natural gas (CH4). Alkali and alkaline earth metals can serve both as promoters for methanation catalysts and as adsorbent phases upon the combined capture and methanation of CO2. Their promotion effect during methanation of carbon dioxide mainly relies on their ability to generate new basic sites on the surface of metal oxide supports that favour CO2 chemisorption and activation. However, suppression of methanation activity can also occur under certain conditions. Regarding the combined CO2 capture and methanation process, the development of novel dual-function materials (DFMs) that incorporate both adsorption and methanation functions has opened a new pathway towards the utilization of carbon dioxide emitted from point sources. The sorption and catalytically active phases on these types of materials are crucial parameters influencing their performance and stability and thus, great efforts have been undertaken for their optimization. In this review, we present some of the most recent works on the development of alkali and alkaline earth metal promoted CO2 methanation catalysts, as well as DFMs for the combined capture and methanation of CO2.
CoMn Catalysts Derived from Hydrotalcite-Like Precursors for Direct Conversion of Syngas to Fuel Range Hydrocarbons
Authors: Gholami Zahra , Tišler Zdeněk , Velvarská Romana , Kocík Jaroslav
Published: July 2020

Two different groups of CoMn catalysts derived from hydrotalcite-like precursors were prepared through the co-precipitation method, and their performance in the direct production of gasoline and jet fuel range hydrocarbons through Fischer–Tropsch (FT) synthesis was evaluated in a batch autoclave reactor at 240 °C and 7 MPa and H2/CO of 2. The physicochemical properties of the prepared catalysts were investigated and characterized using different characterization techniques. Catalyst performance was significantly affected by the catalyst preparation method. The crystalline phase of the catalyst prepared using KOH contained Co3O4 and some Co2MnO4.5 spinels, with a lower reducibility and catalytic activity than cobalt oxide. The available cobalt active sites are responsible for the chain growth, and the accessible acid sites are responsible for the cracking and isomerization. The catalysts prepared using KOH + K2CO3 mixture as a precipitant agent exhibited a high selectivity of 51–61% for gasoline (C5–C10) and 30–50% for jet fuel (C8–C16) range hydrocarbons compared with catalysts precipitated by KOH. The CoMn-HTC-III catalyst with the highest number of available acid sites showed the highest selectivity to C5–C10 hydrocarbons, which demonstrates that a high Brønsted acidity leads to the high degree of cracking of FT products. The CO conversion did not significantly change, and it was around 35–39% for all catalysts. Owing to the poor activity in the water-gas shift reaction, CO2 formation was less than 2% in all the catalysts.
Annexin-A6 in Membrane Repair of Human Skeletal Muscle Cell: A Role in the Cap Subdomain
Authors: Croissant Coralie , Gounou Céline , Bouvet Flora , Tan Sisareuth , Bouter Anthony
Published: July 2020

Defects in membrane repair contribute to the development of some muscular dystrophies, highlighting the importance to decipher the membrane repair mechanisms in human skeletal muscle. In murine myofibers, the formation of a cap subdomain composed notably by annexins (Anx) is critical for membrane repair. We applied membrane damage by laser ablation to human skeletal muscle cells and assessed the behavior of annexin-A6 (AnxA6) tagged with GFP by correlative light and electron microscopy (CLEM). We show that AnxA6 was recruited to the site of membrane injury within a few seconds after membrane injury. In addition, we show that the deficiency in AnxA6 compromises human sarcolemma repair, demonstrating the crucial role played by AnxA6 in this process. An AnxA6-containing cap-subdomain was formed in damaged human myotubes in about one minute. Through transmission electron microscopy (TEM), we observed that extension of the sarcolemma occurred during membrane resealing, which participated in forming a dense lipid structure in order to plug the hole. By properties of membrane folding and curvature, AnxA6 helped in the formation of this tight structure. The compaction of intracellular membranes—which are used for membrane resealing and engulfed in extensions of the sarcolemma—may also facilitate elimination of the excess of lipid and protein material once cell membrane has been repaired. These data reinforce the role played by AnxA6 and the cap subdomain in membrane repair of skeletal muscle cells.
Hydrodynamics-Based Transplacental Delivery as a Useful Noninvasive Tool for Manipulating Fetal Genome
Authors: Nakamura Shingo , Ando Naoko , Watanabe Satoshi , Akasaka Eri , Ishihara Masayuki , Sato Masahiro
Published: July 2020

We previously demonstrated that the injection of pregnant wild-type female mice (carrying enhanced green fluorescent protein (EGFP)-expressing transgenic fetuses) at embryonic day (E) 12.5 with an all-in-one plasmid conferring the expression of both Cas9 and guide RNA (targeted to the EGFP cDNA) complexed with the gene delivery reagent, resulted in some fetuses exhibiting reduced fluorescence in their hearts and gene insertion/deletion (indel) mutations. In this study, we examined whether the endogenous myosin heavy-chain α (MHCα) gene can be successfully genome-edited by this method in the absence of a gene delivery reagent with potential fetal toxicity. For this, we employed a hydrodynamics-based gene delivery (HGD) system with the aim of ensuring fetal gene delivery rates and biosafety. We also investigated which embryonic stages are suitable for the induction of genome editing in fetuses. Of the three pregnant females injected at E9.5, one had mutated fetuses: all examined fetuses carried exogenous plasmid DNA, and four of 10 (40%) exhibited mosaic indel mutations in MHCα. Gene delivery to fetuses at E12.5 and E15.5 did not cause mutations. Thus, the HGD-based transplacental delivery of a genome editing vector may be able to manipulate the fetal genomes of E9.5 fetuses.
Synthesis and Chemistry of 1,2,3-Benzothiadiazine 1,1-Dioxide Derivatives: A Comprehensive Overview
Authors: Gyűjtő Imre , Simig Gyula , Porcs-Makkay Márta , Volk Balázs
Published: July 2020

1,2,4-Benzothiadiazine 1,1-dioxide derivatives (e.g., chlorothiazide, hydrochlorothiazide) have been long used in the human therapy as diuretic and antihypertensive agents. Marketed drugs containing the structurally related phthalazinone scaffold are applied for the treatment of various diseases ranging from ovarian cancer to diabetes and allergy. 1,2,3-Benzothiadiazine 1,1-dioxides combine the structural features of these two compound families, which led to their more intensive research since the 1960s. In the present review, we summarize the literature of this period of more than half a century, including all scientific papers and patent applications dealing with the synthesis and reactions of this compound family, briefly hinting at their potential therapeutic application as well.
Digital Transformation Reduces Costs of the Paints and Coatings Development Process
Authors: Kern Tomaž , Krhač Andrašec Eva , Urh Benjamin , Senegačnik Marjan
Published: July 2020

An essential characteristic of the new product development process is to develop a new marketable product in the shortest possible time with the lowest reasonable costs. Therefore, the key factor of the process is efficiency. The paints and coatings industry development process contain numerous laboratory tests to determine the appropriateness of new formulation. It is proven that digital transformation can reduce the number of laboratory tests and consequently shorten the throughput time of the development process. This raised the question of whether the faster development process also reduces the process’ cost, or they even increase due to information and communication technology implementation. Therefore, the research’s purpose was to determine whether reducing the number of laboratory tests, based on the implementation of information and communication technology (ICT), affects reducing costs in the paints and coatings development process. The conventional process and the redesigned process of paints and coatings development were used as the basis of the research. The comparative analysis of the costs incurred during the development process was made. The analysis compares the types and amount of incurred costs. The article proves that digital transformation has a significant impact on up to 48% on reducing costs of the paints and coatings development process.
High-Temperature Evolution of the Incommensurate Composite Crystal Ca0.83CuO2
Authors: Righi Lara , Merlini Marco , Gemmi Mauro
Published: July 2020

The crystal structure of the composite crystal Ca0.83CuO2 was investigated by synchrotron powder diffraction at high temperature. The incommensurate modulated structure was firstly analyzed at room temperature (RT) and successfully solved by adopting the (3D + 1)-dimensional symmetry P21/m(α0γ)0s. The composite crystal is featured by a non-uniform distribution of Ca ions occupying octahedral sites formed by the spatial arrangement by the infinite 1D CuO2 chains. By approaching 500 K, Ca0.83CuO2 undergoes a structural rearrangement ruled by the shrinking of the Ca interatomic distances. The high-temperature crystalline phase is characterized by a different incommensurate periodicity requiring the recombination of the Ca/CuO2 balance featuring the composite intergrowth of the two almost independent sub-structures. We ascertain that the new crystalline form is stable up to 950 K near to the limit of the thermal decomposition.
Radiomics for the Diagnosis and Differentiation of Pancreatic Cystic Lesions
Authors: Machicado Jorge D. , Koay Eugene J. , Krishna Somashekar G.
Published: July 2020

Radiomics, also known as quantitative imaging or texture analysis, involves extracting a large number of features traditionally unmeasured in conventional radiological cross-sectional images and converting them into mathematical models. This review describes this approach and its use in the evaluation of pancreatic cystic lesions (PCLs). This discipline has the potential of more accurately assessing, classifying, risk stratifying, and guiding the management of PCLs. Existing studies have provided important insight into the role of radiomics in managing PCLs. Although these studies are limited by the use of retrospective design, single center data, and small sample sizes, radiomic features in combination with clinical data appear to be superior to the current standard of care in differentiating cyst type and in identifying mucinous PCLs with high-grade dysplasia. Combining radiomic features with other novel endoscopic diagnostics, including cyst fluid molecular analysis and confocal endomicroscopy, can potentially optimize the predictive accuracy of these models. There is a need for multicenter prospective studies to elucidate the role of radiomics in the management of PCLs.
The Effects of Genetic and Epigenetic Alterations of BARD1 on the Development of Non-Breast and Non-Gynecological Cancers
Authors: Watters Andrea K. , Seltzer Emily S. , MacKenzie Danny , Young Melody , Muratori Jonathan , Hussein Rama , Sodoma Andrej M. , To Julie , Singh Manrose , Zhang Dong
Published: July 2020

Breast Cancer 1 (BRCA1) gene is a well-characterized tumor suppressor gene, mutations of which are primarily found in women with breast and ovarian cancers. BRCA1-associated RING domain 1 (BARD1) gene has also been identified as an important tumor suppressor gene in breast, ovarian, and uterine cancers. Underscoring the functional significance of the BRCA1 and BARD1 interactions, prevalent mutations in the BRCA1 gene are found in its RING domain, through which it binds the RING domain of BARD1. BARD1-BRCA1 heterodimer plays a crucial role in a variety of DNA damage response (DDR) pathways, including DNA damage checkpoint and homologous recombination (HR). However, many mutations in both BARD1 and BRCA1 also exist in other domains that significantly affect their biological functions. Intriguingly, recent genome-wide studies have identified various single nucleotide polymorphisms (SNPs), genetic alterations, and epigenetic modifications in or near the BARD1 gene that manifested profound effects on tumorigenesis in a variety of non-breast and non-gynecological cancers. In this review, we will briefly discuss the molecular functions of BARD1, including its BRCA1-dependent as well as BRCA1-independent functions. We will then focus on evaluating the common BARD1 related SNPs as well as genetic and epigenetic changes that occur in the non-BRCA1-dominant cancers, including neuroblastoma, lung, and gastrointestinal cancers. Furthermore, the pro- and anti-tumorigenic functions of different SNPs and BARD1 variants will also be discussed.
Cryopreservation and the Freeze–Thaw Stress Response in Yeast
Authors: Cabrera Elizabeth , Welch Laylah C. , Robinson Meaghan R. , Sturgeon Candyce M. , Crow Mackenzie M. , Segarra Verónica A.
Published: July 2020

The ability of yeast to survive freezing and thawing is most frequently considered in the context of cryopreservation, a practical step in both industrial and research applications of these organisms. However, it also relates to an evolved ability to withstand freeze–thaw stress that is integrated with a larger network of survival responses. These responses vary between different strains and species of yeast according to the environments to which they are adapted, and the basis of this adaptation appears to be both conditioned and genetic in origin. This review article briefly touches upon common yeast cryopreservation methods and describes in detail what is known about the biochemical and genetic determinants of cell viability following freeze–thaw stress. While we focus on the budding yeast Saccharomyces cerevisiae, in which the freeze–thaw stress response is best understood, we also highlight the emerging diversity of yeast freeze–thaw responses as a manifestation of biodiversity among these organisms.
A New Secret Sharing Scheme Based on Polynomials over Finite Fields
Authors: Çalkavur Selda , Solé Patrick , Bonnecaze Alexis
Published: July 2020

In this paper, we examine a secret sharing scheme based on polynomials over finite fields. In the presented scheme, the shares can be used for the reconstruction of the secret using polynomial multiplication. This scheme is both ideal and perfect.
The Impact of Artificial Intelligence in the Endoscopic Assessment of Premalignant and Malignant Esophageal Lesions: Present and Future
Authors: Lazăr Daniela Cornelia , Avram Mihaela Flavia , Faur Alexandra Corina , Goldiş Adrian , Romoşan Ioan , Tăban Sorina , Cornianu Mărioara
Published: July 2020

In the gastroenterology field, the impact of artificial intelligence was investigated for the purposes of diagnostics, risk stratification of patients, improvement in quality of endoscopic procedures and early detection of neoplastic diseases, implementation of the best treatment strategy, and optimization of patient prognosis. Computer-assisted diagnostic systems to evaluate upper endoscopy images have recently emerged as a supporting tool in endoscopy due to the risks of misdiagnosis related to standard endoscopy and different expertise levels of endoscopists, time-consuming procedures, lack of availability of advanced procedures, increasing workloads, and development of endoscopic mass screening programs. Recent research has tended toward computerized, automatic, and real-time detection of lesions, which are approaches that offer utility in daily practice. Despite promising results, certain studies might overexaggerate the diagnostic accuracy of artificial systems, and several limitations remain to be overcome in the future. Therefore, additional multicenter randomized trials and the development of existent database platforms are needed to certify clinical implementation. This paper presents an overview of the literature and the current knowledge of the usefulness of different types of machine learning systems in the assessment of premalignant and malignant esophageal lesions via conventional and advanced endoscopic procedures. This study makes a presentation of the artificial intelligence terminology and refers also to the most prominent recent research on computer-assisted diagnosis of neoplasia on Barrett’s esophagus and early esophageal squamous cell carcinoma, and prediction of invasion depth in esophageal neoplasms. Furthermore, this review highlights the main directions of future doctor–computer collaborations in which machines are expected to improve the quality of medical action and routine clinical workflow, thus reducing the burden on physicians.
Effect of Decreasing Temperature Reciprocating Upsetting-Extrusion on Microstructure and Mechanical Properties of Mg-Gd-Y-Zr Alloy
Authors: Xu Wenlong , Yu Jianmin , Wu Guoqin , Jia Leichen , Gao Zhi , Miao Zhan , Zhang Zhimin , Yan Feng
Published: July 2020

The decreasing temperature reciprocating upsetting-extrusion (RUE) deformation experiment was carried out on Mg-Gd-Y-Zr alloy to study RUE deformation on the influence of microstructure of the alloy. This work showed that with the gradual increase of RUE deformation passes, the continuous dynamic recrystallization (CDRX) process and the discontinuous dynamic recrystallization (DDRX) process occurred at the same time, and the grain refinement effect was obvious. Particulate precipitation induced the generation of DRX through particle-stimulated nucleation (PSN). In addition, after one pass of RUE deformation, the alloy produced a strong basal texture. As the RUE experiment proceeded, the basal texture intensity decreased. The weakening of the texture was due to the combined effect of DRX and alternating loading forces in the axial and radial directions. After four RUE passes, the mechanical properties of the alloy had been significantly improved, which was the result of the combined effect of dislocation strengthening, fine grain strengthening, and second phase strengthening.
Corrosion Behavior and Morphology of Passive Films Modified with Zinc–Aluminum Simultaneous Treatment on Different Metals
Authors: Zhang Shenghan , Sun Chenhao , Di Jie , Tan Yu
Published: July 2020

Passive films were formed on A508-3 steel (A508-3), 304L stainless steel (304L) and Incoloy 800 (In800) with blank/zinc/zinc–aluminum treatments in air at 300 °C. The electrochemical corrosion behaviors of different metals were investigated through potentiodynamic polarization, electrochemical impedance spectroscopy and the Mott–Schottky technique. The morphology and composition of passive films were analyzed using scanning electron microscopy (SEM) and energy dispersive spectrometry (EDS). The zinc–aluminum treatment effectively reduced the corrosion current and increased the impedance of A508-3 and 304L, but had a weak effect on In800. The zinc–aluminum treatment reduced the carrier concentration of A508-3 and changed the semiconductor property of 304L and In800. The order of zinc–aluminum treatment for improving the corrosion resistance of three metals was: A508-3 > 304L > In800. In addition, the zinc–aluminum treatment enhanced the density and smoothness of passive films. According to the composition analysis, spinel ZnAl2O4 was formed on three metals; however, the amount of spinel varied with the content of nickel and chromium in different metals, which affected the results of using this technology.
Analytical Guidelines for Designing Curvature-Induced Dielectrophoretic Particle Manipulation Systems
Authors: Kale Akshay , Malekanfard Amirreza , Xuan Xiangchun
Published: July 2020

Curvature-induced dielectrophoresis (C-iDEP) is an established method of applying electrical energy gradients across curved microchannels to obtain a label-free manipulation of particles and cells. This method offers several advantages over the other DEP-based methods, such as increased chip area utilisation, simple fabrication, reduced susceptibility to Joule heating and reduced risk of electrolysis in the active region. Although C-iDEP systems have been extensively demonstrated to achieve focusing and separation of particles, a detailed mathematical analysis of the particle dynamics has not been reported yet. This work computationally confirms a fully analytical dimensionless study of the electric field-induced particle motion inside a circular arc microchannel, the simplest design of a C-iDEP system. Specifically, the analysis reveals that the design of a circular arc microchannel geometry for manipulating particles using an applied voltage is fully determined by three dimensionless parameters. Simple equations are established and numerically confirmed to predict the mutual relationships of the parameters for a comprehensive range of their practically relevant values, while ensuring design for safety. This work aims to serve as a starting point for microfluidics engineers and researchers to have a simple calculator-based guideline to develop C-iDEP particle manipulation systems specific to their applications.
Granular Calcite Stimulates Natural Mycorrhization and Growth of White Spruce Seedlings in Peat-Based Substrates in Forest Nursery
Authors: Lamhamedi Mohammed S. , Renaud Mario , Auger Isabelle , Fortin J. André
Published: July 2020

The acidity of peat-based substrates used in forest nurseries limits seedling mineral nutrition and growth as well as the activity of microorganisms. To our knowledge, no study has yet evaluated the use of granular calcite as a covering material to increase pH, calcium and CO2 concentrations in the rhizosphere and ectomycorrhizal development. The objective is to compare different covering treatments on early colonization of the roots by ectomycorrhizal fungi, as well as the growth and calcium nutrition of white spruce seedlings in the forest nursery. Three treatments were used to cover the plant cavities (Silica (29 g/cavity; control treatment), Calcite (24 g/cavity) and calcite+ (31 g/cavity)) and were distributed randomly inside each of the five complete blocks of the experimental design. The results show that calcite stimulates natural mycorrhization. Seedlings grown with calcite have significant gains for several growth and physiological variables, and that the periphery of their root plugs are more colonized by the extramatrical phase of ectomycorrhizal fungi, thus improving root-plug cohesion. The authors discuss the operational scope of the results in relation to the tolerance of seedlings to environmental stress and the improvement of their quality, both in the nursery and in reforestation sites.
Characterization of Salmonella Phage LPST153 That Effectively Targets Most Prevalent Salmonella Serovars
Authors: Islam Md. Sharifull , Hu Yang , Mizan Md. Furkanur Rahaman , Yan Ting , Nime Ishatur , Zhou Yang , Li Jinquan
Published: July 2020

Foodborne diseases represent a major risk to public health worldwide. In this study, LPST153, a novel Salmonella lytic phage with halo (indicative of potential depolymerase activity) was isolated by employing Salmonella enterica serovar Typhimurium ATCC 13311 as the host and had excellent lytic potential against Salmonella. LPST153 is effectively able to lyse most prevalent tested serotypes of Salmonella, including S. Typhimurium, S. Enteritidis, S. Pullorum and S. Gallinarum. Morphological analysis revealed that phage LPST153 belongs to Podoviridae family and Caudovirales order and could completely prevent host bacterial growth within 9 h at multiplicity of infection (MOI) of 0.1, 1, 10 and 100. LPST153 had a latent period of 10 min and a burst size of 113 ± 8 PFU/cell. Characterization of the phage LPST153 revealed that it would be active and stable in some harsh environments or in different conditions of food processing and storage. After genome sequencing and phylogenetic analysis, it is confirmed that LPST153 is a new member of the Teseptimavirus genus of Autographivirinae subfamily. Further application experiments showed that this phage has potential in controlling Salmonella in milk and sausage. LPST153 was also able to inhibit the formation of biofilms and it had the ability to reduce and kill bacteria from inside, including existing biofilms. Therefore, the phage LPST153 could be used as a potential antibacterial agent for Salmonella control in the food industry.
Asymmetric Amination of meso-Epoxide with Vegetable Powder as a Low-Toxicity Catalyst
Authors: Takeuchi Yuki , Asano Tatsuhiro , Tsuzaki Kazuya , Wada Koichi , Kurata Hiroyuki
Published: July 2020

This paper describes the scope and limitation of substrates subjected to asymmetric amination with epoxides catalyzed by a soluble soybean polysaccharide (Soyafibe S-DN), which we recently discovered from the reaction of 1,2-epoxycyclohexane with cyclopropylamine. Various meso-epoxides reacted with various amines afforded the corresponding products with good enantiomeric selectivity. Since it was found that pectin was found to have a catalytic ability after screening commercially available polysaccharides, we studied 33 different vegetable powders having pectic substances, and we found that many vegetable powders showed catalytic ability. These results should guide in using vegetable components as low-toxic catalysts for the production of pharmaceuticals.
Theoretical Investigation on Molecular Structure and Electronic Properties of BxLiy Cluster for Lithium-Ion Batteries with Quantum ESPRESSO Program
Authors: Çipiloğlu Mustafa Ali , Özkurt Ali
Published: July 2020

In this study, molecular structure and electronic properties of eleven BxLiy (x = 1–3, y = 1–3) clusters are examined using the Perdew, Burke and Ernezerhof (PBE) method in the Quantum ESPRESSO program. Three main groups, consisting of two atoms, three atoms and four atoms, are selected as the starting points. The stable configurations, their binding energies per atom (Eb), dissociation energy (ΔE), and the second difference in energy (Δ2E), HOMO-LUMO (HOMO: Highest Occupied Molecular Orbital LUMO: Lowest Occupied Molecular Orbital) gaps, total energy, frequency, force on atom, point group, bond length, density of state (DOS) and band structures are investigated for BxLiy (x = 1–3, y = 1–3) clusters. The results of binding energies (Eb), dissociation energy (ΔE) and the second difference in energy (Δ2E) show that BLi, BLi2 first isomer, BLi2 second isomer, B2Li2 first isomer, B2Li2 second isomer and BLi3 are the most stable among all 11 molecules of BxLiy (x = 1–3, y = 1–3). The stability of BxLiy (x = 1–3, y = 1–3) clusters depend on both the formation of geometrical structures on the number of Li atoms. As the number of Li atoms in the group increases, the stability of BxLiy clusters also increases. Within each group formation of geometrical structures, the stability of BxLiy clusters changes. It is observed that they may change the capability of chemical reactions in BxLiy clusters.
Synthesis of In Situ Photoinduced Halloysite-Polypyrrole@Silver Nanocomposite for the Potential Application in Humidity Sensors
Authors: Jlassi Khouloud , Mallick Shoaib , Mutahir Hafsa , Ahmad Zubair , Touati Farid
Published: July 2020

Halloysite-polypyrrole-silver nanocomposite has been prepared via in situ photopolymerizations of pyrrole in the presence of silanized halloysite and silver nitrate as a photoinitiator. The halloysite nanoclay (HNT) was modified using the hydrogen donor silane coupling agent (DMA) in order to provide anchoring sites for the polypyrrole/silver composite (PPy@Ag). The mass loadings for both PPy and Ag have been estimated to be 21 and 26 wt%, respectively. The anchored Ag particles were found in the metallic state. The resulting PPy@Ag-modified silanized HNT has been evaluated for the potential application for impedance humidity sensors. HNT-DMA-PPy@Ag nanocomposite with different weight % of PPy@Ag (0.25 wt%, 0.5 wt%, and 1 wt%) was deposited on the pre-patterned interdigital Indium Tin Oxide (ITO) electrodes by spin coating technique. The addition of Ag nanoparticles within the nanocomposite enhances the hydrophilicity of the sensing film, which improves the sensitivity of the humidity sensors. The HNT-DMA-PPy@Ag (0.5 wt%) nanocomposite-based impedance sensors showed good sensitivity and lowered hysteresis as compared to the other ratios of the composite. The maximum calculated hysteresis loss of the HNT-DMA-PPy@Ag (0.5 wt%)-based humidity sensor is around 4.5% at 80% RH (relative humidity), and the minimum hysteresis loss estimated to be 0.05% at 20% RH levels. The response and recovery time of HNT-DMA-PPy@Ag (0.5 wt%) nanocomposite-based impedance sensors were found to be 30 and 35 s, respectively. The interesting humidity-dependent impedance properties of this novel composite make it promising in humidity sensing.
Mediterranean Diet, Physical Activity and Gut Microbiome Composition: A Cross-Sectional Study among Healthy Young Italian Adults
Authors: Gallè Francesca , Valeriani Federica , Cattaruzza Maria Sofia , Gianfranceschi Gianluca , Liguori Renato , Antinozzi Martina , Mederer Beatriz , Liguori Giorgio , Romano Spica Vincenzo
Published: July 2020

Background. This cross-sectional study aimed to explore the microbial composition of the gut and its possible association with the Mediterranean diet (MD) after adjusting for demographic and anthropometric characteristics in a sample of healthy young Italian adults. Methods. Gut microbiota, demographic information, and data on adherence to MD and physical activity (PA) habits were collected in a sample of 140 university students (48.6% males, mean age 22.5 ± 2.9) with a mean body mass index (BMI) of 22.4 ± 2.8 kg/m2 (15.2–33.8) and a mean PA level of 3006.2 ± 2973.6 metabolic equivalent (MET)-minutes/week (148–21,090). Results. A high prevalence of Firmicutes and Bacteroidetes was found in all the fecal samples. Significant dissimilarities in the microbiota composition were found on the basis of MD adherence and PA levels (p = 0.001). At the genus level, Streptococcus and Dorea were highly abundant in overweight/obese individuals, Ruminococcus and Oscillospira in participants with lower adherence to MD, and Lachnobacterium in subjects with low levels of PA (p = 0.001). A significantly higher abundance of Paraprevotella was shown by individuals with lower BMI, lower MD adherence, and lower PA levels (p = 0.001). Conclusions. This study contributes to the characterization of the gut microbiome of healthy humans. The findings suggest the role of diet and PA in determining gut microbiota variability.