bluuebunny/crossref_metadata_2025 huggingface dataset:
sRNAflow: A Tool for Analysis of Small RNA-Seq Data
Authors: Zayakin Pawel
Published: January 2024

Аnalysis of small RNA sequencing data across a range of biofluids is a significant research area, given the diversity of RNA types that holds potential diagnostic, prognostic, and predictive value. The intricate task of segregating the complex mixture of small RNAs from both human and other species, including bacteria, fungi, and viruses, poses one of the most formidable challenges in the analysis of small RNA sequencing data, currently lacking satisfactory solutions. This study introduces sRNAflow, a user-friendly bioinformatic tool with a web interface designed for the analysis of small RNAs obtained from biological fluids. Tailored to the unique requirements of such samples, the proposed pipeline addresses various challenges, including filtering potential RNAs from reagents and environment, classifying small RNA types, managing small RNA annotation overlap, conducting differential expression assays, analysing isomiRs, and presenting an approach to identify the sources of small RNAs within samples. sRNAflow also encompasses an alternative alignment-free analysis of RNA-seq data, featuring clustering and initial RNA source identification using BLAST. This comprehensive approach facilitates meaningful comparisons of results between different analytical methods. The source code can be accessed at https://github.com/zajakin/sRNAflow under the GPL3 licence.
Blepharoptosis Associated with Hard Contact Lens Wearing in Keratoconic Eyes
Authors: Hoshi Kensei , Dannoue Kazuhiko , Yoshida Junko , Namba Hiroyuki , Usui Tomohiko
Published: January 2024

Keratoconus is a condition that causes progressive thinning and anterior protrusion of the cornea. Because of its irregular astigmatism, mild to moderate keratoconus is corrected with hard contact lenses (HCL), but blepharoptosis due to long-term wear is often a problem. In this study, we investigated blepharoptosis in hard contact lens wearers with keratoconus. Thirty seven keratoconic eyes were enrolled and divided into several groups according to their wearing history or age. Eyelid margin distance (EMD), margin light reflex distance-1 (MRD-1) and eyelid elevator muscle function were measured by ruler or anterior segment optical coherence tomography. EMD decreased with years of HCL wear but showed no correlation with age; MRD-1 decreased with years of wear and with older age; LF showed no relationship with either years of wear or age. In the classification of ptosis, there was no severe ptosis in the present sample. Long-term wear of HCLs is likely to cause blepharoptosis even in keratoconic eyes, but its degree may be mild.
Tidally Induced Eddies Dominate Dispersal of the Thermal Plume from the Third Nuclear Power Plant in the Semi-enclosed Nan Wan Bay
Authors: Lee Hung-Jen , Huang Shih-Jen , Meng Pei-Jie , Chen Chung-Chi , Ho Chia-Ying , Tsai Yi-Chen
Published: January 2024

In order to assess the range of impact of thermal wastewater discharge from the third Nuclear Power Plant (NP_No.3) on the local ecosystem, a three-dimensional ocean model (MITgcm) driven by tidal and climatological forcings is employed to study the present work. Tides and daily wind forcings are incorporated into the MITgcm model to examine their effects on the thermal plume and the water circulation in Nan Wan Bay. The model results reveal that the thermal plume is most likely to disperse to the southwest in summer; it is unlikely to drift to the southeast or northeast because of the presence of gentle southwesterly monsoon. In winter, the thermal plume is most likely to be directed to the southwest but barely visible in the northeast or southeast directions because of prevailing northeasterly monsoon. Additionally, it is worth emphasizing that strong tidal currents generate a pair of counter-rotating eddies that significantly dominate the dispersal of the thermal plume. However, seasonal monsoons also play an essential role in modifying the plume’s direction and dispersion. The model results reveal that the flow field and thermal plume agree well with observational data.
Prognosticating Parsimony: An Ebullient Ensemble Approach to Predictive Modeling in Artificial Intelligence
Authors: Ting Li
Published: January 2024

This research delves into the realm of predictive modeling within artificial intelligence (AI) and introduces an innovative ensemble approach designed to enhance prognostic precision. The proposed methodology, characterized by its ebullient nature, leverages the collective wisdom of diverse predictive models, synthesizing a comprehensive and robust framework. The pursuit of parsimony are paramount, underscoring the need for efficient model architectures that balance predictive acuracy and computational efficiency. Our study meticulously explores the amalgamation of diverse algorithms, encapsulating the intrinsic complexity of real-world phenomena. We navigate the intricate landscape of feature selection, algorithmic diversity, and model combination, fostering a holistic understanding of the prognostic process. The ebullient ensemble emerges as a dynamic solution, harnessing the synergy of constituent models while mitigating the risk of overfitting. To validate the efficacy of our approach, extensive experiments are conducted on diverse datasets, spanning domains such as healthcare, finance, and natural language processing. Comparative analyses demonstrate the superior predictive performance of our ensemble model in comparison to individual algorithms and traditional ensemble methods. Additionally, we delve into interpretability aspects, elucidating the underlying mechanisms that contribute to the model's prognostic prowess. Our research advances the frontier of predictive modeling in AI, offering a nuanced and sophisticated paradigm for prognostication. The ebullient ensemble approach stands as a testament to the synergy achievable through the amalgamation of diverse predictive models, providing a pragmatic and parsimonious avenue for enhanced prognostic acuracy in artificial intelligence applications.
Stimulus-Induced Activation of the Glycoprotein Hormone α-Subunit Promoter in Human Placental Choriocarcinoma Cells: Major role of a Tandem cAMP Response Element
Authors: Bürvenich Lars , Rössler Oliver G , Thiel Gerald
Published: January 2024

The glycoprotein hormones luteinizing hormone, follicle-stimulating hormone, thyroid-stimulating hormone and chorionic gonadotropin consist of a common alpha-subunit and a hormone-specific beta-subunit. The alpha-subunit is expressed in thyrotrophs, gonadotrophs, and placental cells, and its expression is regulated by extracellular signal molecules. Here, we assessed the regulation of the gene encoding the alpha-subunit in placental JEG-3 cells, using a chromatin-embedded reporter gene under the control of the glycoprotein hormone alpha-subunit promoter. The results show that stimulation of the cells with forskolin, an activator of adenylate cyclase, induced transcription of a reporter gene controlled by the alpha-subunit promoter. Similarly, expression of a nuclear-targeted catalytic subunit of cAMP-dependent protein kinase increased reporter gene transcription. Expression experiments involving constitutively active mutants of MKK6 and MEKK-1 showed that the alpha-subunit promoter is responsive to activation of p38 protein kinase but only slightly responsive to activation of c-Jun N-terminal protein kinase. Finally, we show that stimulation of a Galphaq-coupled designer receptor triggers transcription of a reporter gene controlled by the glycoprotein hormone alpha-subunit promoter, mediated by the transcription factor CREB. Deletion mutagenesis highlights the importance of a tandem cAMP response element within the alpha-subunit promoter that acts as a point of convergence for different signaling pathways.
CM1, a Chrysin Derivative, Protects Endotoxin-Induced Lethal Shock by Regulating the Excessive Activation of Inflammatory Responses
Authors: Lee Jae-Hyung , Ko Young Bok , Choi Yong Min , Kim Jinju , Cho Hwan-Doo , Choi Hyeonil , Song Ha-Yeon , Han Jeong Moo , Cha Guang-Ho , Lee Young-Ha , Kim Jin-Man , Kim Woo Sik , Byun Eui-Baek , Yuk Jae-Min
Published: January 2024

Human sepsis is one of the leading cause of death worldwide and is known to be a harmful damaging host inflammatory condition, primarily caused by endotoxin released by gram-negative bacteria. Despite antibiotics administration being widely used to treat disease, effective targeted therapeutic strategies for the sepsis are still lacking. Here, we demonstrate that CM1, a derivative of natural polyphenol chrysin, exerts anti-inflammatory activity by inducing the ubiquitin-editing protein TNFAIP3 and NAD-dependent deacetylase sirtuin 1 (SIRT1). We found that CM1 attenuated Toll-like receptor 4 (TLR4)-induced the generation of inflammatory cytokines by inhibiting the extracellular-signal-regulated kinase (ERK)/MAPK and nuclear factor kappa B (NF-κB) signaling pathway. In addition, the treatment of macrophages with CM1 induced the expression of TNFAIP3 and SIRT1 in TLR4-stimulated primary macrophages, however the anti-inflammatory properties of CM1 was disappeared by siRNA silencing of TNFAPI3 or by the genetic and pharmacologic inhibition of SIRT1. Importantly, intravenously administration of CM1 resulted in the decreased susceptibility to endotoxin-induced sepsis, leading to inhibition of the generation of proinflammatory cytokines and neutrophils infiltration into lung than control mice. Collectively, these findings suggest that CM1 has the potential to be a treatment candidate for diverse inflammatory diseases including sepsis.
The Spectrofluorometric Determination of DNA Binding Constants for Several Psoralen Derivatives
Authors: Balas Andrei , Gasparro Francis P.
Published: January 2024

Psoralens have been used in the treatment of several skin diseases such as psoriasis and atopic eczema through PUVA (psoralen + UVA), cutaneous T-cell lymphoma through ECP (extracorporeal photochemotherapy), and recently, the treatment of solid tumors through X-PACT (x-ray psoralen activated cancer therapy). Ingesting psoralens and exposing the molecules to UVA light allows for the flat-planar psoralens to intercalate or slide in-between base pairs and then to form photo-adducts with the DNA backbone which can stop or slow DNA replication. The intrinsic ability of psoralens to bind with DNA and their therapeutic effectiveness contribute to the increased interest in the study of these molecules. Several studies measuring psoralen-DNA binding capabilities have used a variety of spectroscopic techniques and different experimental conditions. In this study, spectrofluorometry was used to measure the DNA-binding capabilities of three different psoralen derivatives (6E, AMT and 8-MOP) under identical experimental conditions. The binding constants were 0.325x106 M-1 for 8-MOP, 0.516x106 M-1 for AMT, and 7.30x106 M-1 for 6E. This direct comparison of the three different psoralens demonstrated the impact of their molecular structure on the DNA-binding capacity. 6E’s significantly greater binding constant makes it the stronger candidate for further studies looking into potential applications for cancer treatment.
Effect of Dolutegravir-Based First-Line Antiretroviral Therapy on Mother-to-Child Transmission of HIV among HIV-Exposed Infants in Southern Ethiopia: A Retrospective Before-After Study
Authors: Facha Wolde , Tadesse Takele , Wolka Eskinder , Astatkie Ayalew
Published: January 2024

Background: Currently, a Dolutegravir (DTG)-based regimen is administered to women on option B plus to prevent mother-to-child transmission (MTCT) of the virus. However, its effect on reducing MTCT of human immunodeficiency virus (HIV) among exposed infants over the previously used Efavirenz (EFV)-based regimen is unknown. Objective: This study aimed to compare the effects of DTG-based and EFV-based regimens on the MTCT of HIV among exposed infants in southern Ethiopia. Methods: A retrospective before-after study design was employed from March to May 2023 among 958 mother-infant pairs (479 on EFV-based and 479 on DTG-based regimens) enrolled in the prevent mother-to-child transmission (PMTCT) care from September 2015 to February 2023. The outcome variable was the HIV infection status among the exposed infants. A log-binomial model was employed and the proportion was computed to compare the incidence of MTCT of HIV in both groups. The risk ratio (RR) with 95% confidence interval (CI) was calculated to assess the predictor variables. Results: Mothers on a DTG-based regimen were approximately 44% (adjusted risk ratio (aRR): 0.56; 95% CI: 0.44, 0.70) less likely to transmit HIV to their infants than those on an EFV-based regimen. In addition, poor/fair adherence to antiretroviral therapy (ART) (aRR: 5.82; 95% CI: 3.41, 9.93), home delivery (aRR: 3.61; 95% CI: 2.32, 5.62), mixed feeding practice (aRR: 1.83; 95% CI: 1.45, 2.3), and not receiving antiretroviral prophylaxis (aRR: 3.26; 95% CI: 1.6, 6.64) were found to increase the risk of MTCT of HIV infection, whereas older maternal age (aRR: 0.93; 95% CI: 0.9, 0.96) was a protective factor.Conclusion: The Dolutegravir-based regimen significantly reduced MTCT of HIV among exposed infants compared to the EFV-based regimen. Thus, DTG-based first-line ART regimen supplementation should be sustained to achieve global and national targets for zero new infections in HIV-exposed infants.
Preparation and Properties of Mechanically Robust, Colorless, and Transparent Aramid Films
Authors: Kim Heesang , Noh Jin-Hee , Kim Young-Rae , Kim Hyojin , Kwak Giseop
Published: January 2024

In this study, various diamine monomers were used to synthesize aramid polymer films via a low-temperature solution condensation reaction with diacid chloride. For diamines with relatively high basicity, the reaction system became opaque because amine salt formation inhibited polymer synthesis. Meanwhile, low-basicity diamines with strong electron-withdrawing groups, such as CF3 and sulfone, were smoothly polymerized without amine salt formation to provide highly viscous solutions. The acid byproduct HCl generated during polymerization was removed by adding propylene oxide to the reaction vessel and converting the acid into highly volatile inert substances. The resulting solutions were used as varnishes without any additional purification, and polymer films with an excellent appearance were easily obtained through a conventional casting and convection drying process. The films neither tore nor broke when pulled or bent by hand; furthermore, even when heated up to 400°C, they did not decompose or melt. Moreover, polymers prepared from 2,2-bis (trifluoromethyl) benzidine (TFMB) and bis (4-aminophenyl) sulfone (pAPS) did not exhibit glass transition until decomposition. The prepared polymer films showed a high elastic modulus of more than 4.1 GPa and a high tensile strength of more than 52 MPa. In particular, TFMB-, pAPS-, and 2,2-bis (4-aminophenyl) hexafluoropropane-based polymer films were colorless and transparent, with very high light transmittances of 95%, 96%, and 91%, respectively, at 420 nm and low yellow indexes of 2.4, 1.9, and 4.3, respectively.
The Collapse of a Neutrino Star Singularity: The Mechanism of the Big Bang?
Authors: Bao Jian-Bin , Bao Nicholas
Published: January 2024

The BKL singularity inside a rotating black hole would be a neutrino star. Once its mass exceeds the limit that neutrino degeneracy pressure could support (larger than 3×1022 M⊙), the neutrino star singularity would collapse, raising the temperature to the maximum and dropping the entropy to the minimum to initiate a Big Bang. From the cosmic microwave background, we find where the Big Bang occurred at about 0.66 times the radius of the surface of last scattering away from us and at Galactic coordinates (l, b) ≃ (286°,-43°). As it expands, the clockwise spinning universe has been veering towards the ellipsoidal. These findings are consistent with independent observations of cosmic inhomogeneities, spatial anisotropies, and time variations.
Ternary Logic Gates Design in the Hybrid Memristor-TMD and Graphene FET
Authors: Olakunle Naheem Olakunle , Hazzazi Fawwaz , Chavda Chintan , Veronis Georgios
Published: January 2024

Multiple valued logic (MVL) has proven to be a better alternative and solution to the challenges of traditional binary logic because of its fast computation, fewer interconnects, and small die. It is a potential candidate for future digital design because it allows energy-efficient, low-complex, and high-speed circuits. This paper introduces a new resistive-load two-dimensional field effect transistor-based ternary logic gates, wherein the active resistive-load is replaced with memristor to reduce chip area and power consumption. A memristor-based standard ternary inverter (STI) is designed using GNRFET, MoS2 FET, WSe2 FET, and FinFET, and their performance metric such as delay, power, and energy delay product (EDP) are analyzed. The results show that the proposed design achieves 50% reduction in circuit area, the average power dissipation is reduced by 11.7X, 6.8X, and 3.2X for GNRFET, MoS2 FET, and WSe2 FET, respectively, as compared to FinFET-based ternary inverter. Moreso, other logic gates such as OR, NOR, AND and NAND were simulated in T-SPICE EDA tool, and the results and truth table are in good agreement.
Leveraging AI/ML for anomaly detection, threat prediction, and automated response.
Authors: Ajala Olakunle Abayomi
Published: January 2024

The rapid evolution of information and communication technologies, notably the Internet, has yielded substantial benefits while posing challenges to information system security. With an increasing frequency of cyber threats—from unauthorized access to data breaches—the digital landscape's vulnerability is evident. Addressing the financial impact of cybercrime, this study delves into the role of Artificial Intelligence (AI) and Machine Learning (ML) technologies in cybersecurity. Analyzing advancements and outcomes, the research explores practical techniques for anomaly detection, threat prediction, and automated response. By investigating prior research and real-world implementations, the study provides valuable insights into the potential of AI/ML, uncovering current trends, challenges, and prospects in enhancing cybersecurity tactics amid a dynamically changing threat landscape.
Peraluminous Rare Metal Granites in Iberia: Geochemical, Mineralogical, Geothermobarometric and Petrogenetic Constraints
Authors: López-Moro Francisco Javier , Díez-Montes Alejandro , Timón Sánchez Susana Maria , Llorens González Teresa , Sánchez García Teresa
Published: January 2024

The intensive variables, geochemical, mineralogical and petrogenetic constraints of the Iberian rare metal granites, many of them unknown, are presented. It allows to distinguish two main granitic types with contrasting characteristics: Nb-Ta-rich granites and Nb-Ta-poor granites. The former have lower emplacement temperatures, higher water contents and probably lower emplacement pressures than Nb-Ta-poor granites. Nb-Ta-rich granites also have higher fluoride contents, strong fractionation into twin pairs such as Zr-Hf, Y-Ho and Nb-Ta, and an abundant, probably exsolved, fluid phase, which is not or not as evident in Nb-Ta-poor granites, probably in part because the Nb-Ta-rich granites reach their solidus later (about 550 ºC). The geochemical signature of the Iberian rare metal granites follows the trends of mainly two-mica granites and P-rich cordierite granites, but also of granodiorites and even type I granites, suggesting that the rare metal granites may have different parental magmas. Thermodynamic modeling shows that many of the geochemical characteristics of the RMGs can be explained by a process of extreme differentiation, while others cannot, e.g. Na evolution. In terms of ore deposition, white mica plays a very important role in explaining the variation of the Ta/Nb ratio, although the latter could also be controlled by late Nb-Ta oxides crystallization and even by acidic fluids that remove Nb relative to Ta from earlier Nb-Ta oxides.
Plant Growth-Promoting Bacteria Enhance Survival, Growth, and Nutritional Content of Sugarcane Propagated through Pre-sprouted Seedlings under Water Deficit
Authors: Almeida Laura Costa Oliveira , Santos Hariane Luiz , Nogueira Carlos Henrique de Castro , Carnietto Melina Rodrigues Alves , Da Silva Gustavo Ferreira , Boaro Carmen S. F. , Silva Marcelo de Almeida
Published: January 2024

Sugarcane plays a crucial role in global sugar and ethanol production. Conventionally, sugar-cane propagation involves planting billets. However, Brazilian researchers have introduced the innovative pre-sprouted seedlings (PSS) method, widely used in the MEIOSI (Simultaneously Occurring Interrotational Method) system. Although MPB has several advantages over the con-ventional method, its sensitivity to water scarcity is a challenge. The study aimed to evaluate the survival and growth of PSS inoculated with Bacillus licheniformis and Bacillus subtilis under differ-ent water regimes. The experiment was conducted in the field in a randomized block in strips (split-block) using a 2×4 factorial scheme consisting of two inoculation conditions (with and without bacteria) and four water regimes (0%, 33%, 66%, and 100% of the ideal irrigation). The bacteria increased the PSS's survival and water use efficiency in the field. In addition, inocula-tion increased root and shoot growth, as well as the nutrient uptake such as N, P, Mn, Zn, and Cu, which resulted in a higher number of stalks per meter and, therefore, a higher multiplica-tion rate in the MEIOSI system. Inoculation proved to be a promising alternative for establishing PSS under water restriction.
Use Of Cactus Pear Meal In The Feeding Of Laying Hens In Semi-Intensive System
Authors: Sousa Iara S. , Bezerra Roseane M. , Filho Edson C.S. , Bezerra Leilson R. , Edvan Ricardo L. , Lima Stelio B.P. , Lopes Elainy Cristina , Caravalho Francisca Luana A. , Moura Francinete A.S. , Souza Gabriela I. , Dourado Leilane R.B.
Published: January 2024

Little information is available in the literature on the use of cactus pear meal in poultry diets being important to evaluate diets that provide excellent performance and lower production costs. Our objective was to study the use of cactus pear meal in diets of laying hens. In the first study, two diets for male and female chicks were used - 1: 80% reference diet + 20% Miúda cactus pear meal (CPM) and 2: 80% reference diet + 20% Gigante cactus pear meal. The variety Miúda provid-ed better use of metabolizable energy, digestibility coefficient of dry matter, protein, and min-eral matter. In the second study, a control diet was compared to three diets with different levels of CPM for laying hens, in the proportions of 3%, 6% and 9%. No significant differences were found in productive performance. However, there were significant differences in egg quality, texture and color profile of the cooked yolk, egg composition, fatty acids and cholesterol in the yolk. It is possible to use 9% of CPM in the diet of laying hens in semi-intensive system not compromising performance and egg quality, and using 3% of CPM provides higher economic return.
The Application of Smart Learning Systems during Global Pandemics: Taking Spanish Teaching Course as an Example
Authors: Lan Bo , Liu Tong , Luo And Chao
Published: January 2024

The teaching and learning environment have changed significantly over the last decade with the integration of an increasing amount of information and communication technologies, especially in distance education due to global pandemics, total lockdowns, isolation, and quarantine periods. The number of numerous virtual and non-virtual tools involved in educational processes is growing day by day. In terms of technological innovations used in learning environments, many researchers and educators are trying their best to bring more creative ideas into the technology- based learning environments. Although higher educational institutions have greatly benefited from the growing number of hardware and software resources in the educational process, they have also faced some setbacks that have harmed the learning processes. These technologies have in turn complicated some of the processes in the learning atmosphere. Therefore, we take Spanish teaching course as an example to present the challenging smarter teaching and learning systems that higher educational institutions face today.
Automated Chicken Feeder and Counter Using Yolov4 Algorithm
Authors: Gilongos Azalea Garra , Ponpon Joshua , Reyes Joseph
Published: January 2024

The chicken poultry business is becoming a crucial sector for our nation's sustainable food supply. To increase the health of chickens in coops and maybe increase the output of chicken meat and eggs, several innovations and inventions have been developed. Therefore, the creation of an automated chicken feeding device might be highly beneficial for the expansion of the poultry sector. This equipment may take the role of a worker in the chicken feeding process, solving the industry's labor shortage and introducing a semi-automatic procedure. The main processor of the automated chicken feeding system is a Raspberry Pi 3 Model B+. The machine consists of five main components: a Raspberry Pi with an amplifier that makes noise to draw the attention of free-range chickens, a Raspberry Pi with a pi camera that counts and detects the chickens, a Raspberry Pi with a servomotor that moves the food from storage to a container, a Raspberry Pi with a load cell that controls the number of feeds to avoid waste on foods, and a Raspberry Pi with a temperature sensor that monitors the food's freshness. This enhances the coop's atmosphere while lowering labor costs, conserving food, and ensuring that the chickens are fed on time. It also regulates the temperature sensor to ensure that the chicken food is fresh and prevents food from becoming polluted by insects and chicken excrement.
An Effective and Affordable Internet of Things (IoT) Scale System to Measure Crop Water Use
Authors: Payero José Oscar
Published: January 2024

Scales are widely used in many agricultural applications, ranging from weighing crops at harvest to determine crop yields to regularly weighing animals to determine growth rate. In agricultural research applications, there is a long history of measuring crop water use (evapotranspiration) using a particular type of scale called weighing lysimeters. Typically, weighing lysimeters require very accurate data logging systems that tend to be expensive. Recent developments in open-source technologies, such as micro-controllers and Internet of Things (IoT) platforms, created opportunities for developing effective and affordable ways to monitor crop water use and transmit the data to the Internet in near real-time. Therefore, this study aimed to create an affordable Internet of Things (IoT) scale system to measure crop evapotranspiration. A scale system to monitor crop evapotranspiration was developed consisting of an Arduino-compatible microcontroller with cell phone communication, electronic load cells, an Inter-Integrated Circuit (I2C) multiplexer, and analog-to-digital converters (ADC). The system was powered by a LiPo battery, charged by a small (6 W) solar panel. The IoT scale system was programmed to collect data from the load cells at regular time intervals and send the data to the ThingSpeak.com IoT platform. The system performed successfully during indoor and outdoor experiments conducted in 2023 at the Clemson University Edisto Research and Education Center, Blackville, SC. The results from the experiments showed that the IoT scale system could accurately measure crop evapotranspiration using the weighing lysimeter technique.
Characterization of a Myb Transcription Factor MoMyb13 Reveals Its Role in Growth, Conidiation, Hydrophobicity and Pathogenicity of Magnaporthe oryzae
Authors: Li Ya , Zheng Xiuxia , Pei Mengtian , Chen Mengting , Zhang Shengnan , Liang Chenyu , Gao Luyao , Huang Pin , Olsson Stefan
Published: January 2024

The Myb family of transcription factors (TFs) is a large and functionally diverse group found in all eukaryotes, but its role in fungi remains poorly understood. Here, we characterized a Myb family TF called MoMyb13 in the rice blast fungus, Magnaporthe oryzae. MoMyb13 has two Myb domains and has orthologues only in ascomycete fungi. Localization experiments confirmed that MoMyb13 is located in the nuclei, as expected for a TF. Phenotypic analysis showed that MoMyb13 mutants exhibited reduced growth, whitened colony appearance and no conidia formation. Importantly, these mutants completely lost pathogenicity, despite being able to form appressoria at their hyphae ends, suggesting that these appressoria were non-functional for causing infection. Furthermore, the mutant colonies lost hydrophobicity and had significantly reduced expression of the hydrophobin MPG1. However, overexpression of MPG1 in the mutants restored their hydrophobicity, but not pathogenicity. Stress assay showed that the mutants were more sensitive to SDS, CR and H2O2, but more tolerant to NaCl and SOR. In summary, our study revealed the essential role of the MoMyb13 in the growth, conidiation, hydrophobicity, stress response and pathogenicity of M. oryzae, and provides valuable insights into the working mechanism of Myb TFs in fungi.
Analysis of the Performance of Molecular Dimension Polymer Modified Asphalt Material
Authors: Luo Yang , Zhao Jing , Zheng Chuanfeng , Li Hanjun , Fan Wenjun
Published: January 2024

Matrix asphalt material has poor road performance, which is improved by adding polymer modified agents. The original asphalt material experiment research has a certain limitation in that it cannot truly expose the mechanism and influence of modifiers on asphalt materials. To explore the gain effect of the modified agent on the asphalt material's road performance, the molecular dynamic simulation technology is used to explain its mechanism in the micro dimension. The three parameters of the free volume score, radial distribution function and average directional shift diffusion coefficient are analysed to improve the performance of the modifier on asphalt material, an exploration of the microdimension shows that the amount of SBS modifiers is 6% and the amount of rubber modified asphalt material is 22%. The improvement of materials is better than that of rubber modifiers.
How Effective Is Environmental Protection in Ensuring the Vitality of Wild Orchid Species?
Authors: Scramoncin Lisa , Gerdol Renato , Brancaleoni Lisa
Published: January 2024

Orchids are among the plants most threatened by anthropic impact and environmental changes. Therefore, all known orchid species are protected in several countries by regional, national and international legislation. Several studies cast doubts on the effectiveness of legislation to ensure protection of wild orchids. We assessed the vitality of four orchid populations in a coastal area in Northern Italy, by monitoring vegetative and reproductive traits of orchid populations growing both in protected sites comprised in the Natura 2000 network and in non-protected sites. We also monitored the level of environmental threat to orchid vitality. Early flowering deceptive species (Ophrys sphegodes and Anacamptis morio) exhibited high vegetative vitality and experienced similar levels of environmental threat in protected and non-protected areas. However, their reproductive success was strongly jeopardized probably by failed pollination that impeded fruit set. Late-flowering, partially or totally rewarding species (Anacamptis pyramidalis and Anacamptis coriophora) were more strongly impacted by spring mowing, ungulate herbivory and alien species. Only for A. coriophora were herbivory and alien species invasion lower at protected vs. non-protected sites which ensured higher population vitality at protected sites. We conclude that environmental protection is ineffective for preserving orchids without targeted actions against specific environmental threats.
NLRP3 Inflammasome Activation by Oxidative Stress and Its Implications for Vaccination-Related Adverse Events
Authors: Terhune Todd , Ghafourian Taravat , Deth Richard
Published: January 2024

The cytokine-producing nucleotide-binding domain leucine-rich repeat and pyrin-containing receptor 3 (NLRP3) inflammasome is generally recognized to play a central role in the immune response to vaccination and NLRP3 activity is known to be increased by both aluminum adjuvants and by oxidative stress. Thus, the presence of oxidative stress may place individuals at higher risk for exaggerated or prolonged inflammatory responses and related side effects from vaccination. We here examine the relationship between oxidative stress and NLRP3 inflammasome activity, particularly in the context of aluminum-adjuvanted vaccines, and its implications for subpopulations of individuals with restricted antioxidant capacity.
Integrating High-Resolution Mass Spectral Data, Bioassays and Computational Models to Annotate Bioactives in Botanical Extracts: Case Study – Analysis of Centella asiatica Extract Associates Di-Caffeoylquinic Acids with Protection against Amyloid-β Toxicity in an MC65 cell model
Authors: Alcazar-Magana Armando , Vaswani Ashish , Brown Kevin S. , Jiang Yuan , Alam Md Nure , Caruso Maya , Lak Parnian , Cheong Paul , Gray Nora E. , Quinn Joseph F. , Soumyanath Amala , Stevens Jan F. , Maier Claudia S.
Published: January 2024

Rapid screening of botanical extracts for the discovery of bioactive natural products was performed using a fractionation approach in conjunction with flow-injection high-resolution mass spectrometry for obtaining chemical fingerprints of each fraction, enabling the correlation of the relative abundance of molecular features (representing individual phytochemicals) with the read-outs of bioassays. We applied this strategy for discovering and identifying constituents of Centella asiatica (C. asiatica) that protect against Aβ cytotoxicity in vitro. C. asiatica has been associated with improving mental health and cognitive function, with potential use in Alzheimer’s disease. Human neuroblastoma MC65 cells were exposed to subfractions of an aqueous extract of C. asiatica to evaluate the protective benefit derived from these subfractions against amyloid β-cytotoxicity. The % viability score of the cells exposed to each subfraction was used in conjunction with the intensity of the molecular features in two computational models, namely Elastic Net and selectivity ratio, to determine the relationship of the peak intensity of molecular features and % viability. Finally, the correlation of mass spectral features with MC65 protection and their abundance in different sub-fractions were visualized using GNPS molecular networking. Both computational methods unequivocally identified dicaffeoylquinic acids as providing strong protection against Aβ-toxicity in MC65 cells, in agreement with the protective effects observed for these compounds in previous preclinical model studies.
Neurological Conundrums: Delving into the Complexities of Neuromyelitis Optica Spectrum Disorder with a Detailed Case Analysis
Authors: Chaudhary Rajvi , Vyas Tirth , Patel Param , Parmar Kartikeya
Published: January 2024

Neuromyelitis optica spectrum disorder (NMOSD), previously known as Devic disease or neuromyelitis optica (NMO), represents inflammatory conditions affecting the central nervous system. These disorders are characterized by severe immune-mediated demyelination and axonal damage, with a predilection for targeting optic nerves and the spinal cord. Key clinical features of NMOSD encompass acute episodes of bilateral or rapid sequential optic neuritis and transverse myelitis, typically exhibiting a relapsing course. These attacks endure for several days, and recovery varies, spanning from weeks to months. In this report, we present the case of a 35-year-old individual who initially complained of urinary retention, followed by decreasing vision in the left eye and subsequently in the right eye. These visual symptoms were succeeded by weakness in the right upper and lower limbs.
The Crucial Role of Interdisciplinary Conferences in Advancing Explainable AI in Healthcare
Authors: Patel Ankush U. , Gu Qiangqiang , Esper Ronda , Maeser Danielle , Maeser Nicole
Published: January 2024

Interdisciplinary conferences play a vital role in advancing explainable Artificial Intelligence (AI) within increasingly intersecting healthcare and computational biology arenas. Challenges result-ing from algorithmic bias and the necessity for domain-specific Explainable AI (XAI) techniques underscore the increasing significance of transparent and interpretable AI systems used in patient care. Collaborative efforts between clinicians, data scientists, and various stakeholders are nec-essary to innovate solutions tailored to healthcare needs. Specialized conferences may foster these interdisciplinary interactions, providing platforms for knowledge exchange, networking, and collaborative partnerships. The legal, ethical, and societal dimensions of medical AI advocate for an integrative approach that aligns technological advancements with patient-centered care val-ues. The role of specialized conferences is therefore essential for shaping future directions in ex-plainable AI and computational biology that contribute to improved patient outcomes and healthcare innovations.
Role of Obesity and Mediators of Adipose Tissue in Renal Transplant and Disease
Authors: Mota-Zamorano Sonia , García-Pino Guadalupe , Gervasini Guillermo
Published: January 2024

This review provides insight into the role that obesity, but especially mediators of the adipose tissue, have in both renal disease and transplantation. In particular, we focus on the functions of leptin and adiponectin, inflammatory mediators with widely known clinical implications, as well as on the role of arachidonic acid-derived eicosanoid metabolites. These latter compounds, epoxyeicosatrienoic (EETs) and hydroxyeicosatetraenoic (HETEs) acids, which modulate the liberation of cytokines in the adipose tissue, are generated in the epoxygenase pathway of arachidonic biotransformation via CYP450 enzymes. There is accumulating evidence suggesting that EETs and HETEs may have a critical role in the onset and outcome of chronic kidney disease and renal transplantation. Finally, we also discuss the reported effect that the presence of genetic variants in leptin, adiponectin, EETs and HETEs-related genes may cause in renal patients and recipients. The levels of cytokines of the adipose tissue and related compounds play a remarkable role in both renal disease and transplant. Accordingly, novel therapeutic strategies are being developed based on the modulation of their concentrations in patients with various diseases.
Clinical Validation Of ANKRD36 Mutations As A Novel Biomarker For Monitoring Early Progression and Timely Clinical Interventions In Blast Crisis CML
Authors: Al-anazi Nawaf , Absar Muhammad , Siyal Abdulaziz , Basit Salman , Shammas Masood , Mahmood Amer , Almukhaylid Sarah , Iqbal Zafar
Published: January 2024

Background: Chronic Myeloid Leukemia (CML) is initiated in the bone marrow due to the chromosomal translocation t(9;22), resulting in the fusion oncogene BCR-ABL. Tyrosine kinase inhibitors (TKIs) targeting BCR-ABL have transformed fatal CML into an almost curable disease. However, TKIs lose efficacy during disease progression, and the mechanism of CML progression remains to be fully understood. Additionally, common molecular biomarkers for CML progression are lacking. Our studies previously detected ANKRD36 (c.1183_1184 delGC and c.1187_1188 dupTT) associated exclusively with advanced phase CML. However, clinical validation of this finding was pending. Therefore, this study aimed to clinically validate mutated ANKRD36 as a novel biomarker of CML progression. Materials and Methods: The study enrolled 124 patients in all phases of CML, recruited from Mayo Hospital and Hameed Latif Hospital in Lahore, Punjab, between January 2020 and September 2023. All response criteria were adopted from the European LeukemiaNet guideline 2020. Informed consent was obtained from all study subjects. The study was approved byscientific and ethical review committees of all participating centers. Sanger sequencing was employed to detect ANKRD36mutations in CML patients in accelerated phase (AP) (n=11) and blast crisis (BC) (n=10), with chronic-phase CML (CP-CML) patients as controls (n=103). Samples were processed using Big Dye Terminator Cycle Sequencing Ready Reaction kits and sequenced using ABI Prism 3730 Genetic Analyzer, and sequencing using forward and reverse primers for ANKRD36.Results: During our study, 17% of CML patients progressed to advanced phases AP-CML n= 11 (8.9%) and BC-CML n=10(8.1%). The chronic- and advanced-phase patients showed significant difference with respect to male-to-female ratio, hemoglobin level, WBC count, and platelet count. Sanger sequencing detected ANKRD36 mutations c.1183_1184 delGC and c.1187_1185 dupTT exclusively in all AP- and BC-CML patients but in none of the CP-CML patients. Nevertheless, mutations status was not associated with male-to-female ratio, hemoglobin level, WBC count, and platelet count, which makes ANKRD32 as an independent predictor of early and terminal disease progression in CML. Conclusions: The study confirms ANKRD36 as a novelgenomic biomarker for early and late CML progression. Further prospective studies should be carried out in this regard. ANKRD36, although fully uncharacterized in humans, shows the highest expression in bone marrow, particularly myeloid cells. Functional integrated genomic studies are recommended to further explore the role of ANKRD36 in the biology and pathogenesis of CML.
Fibrosis Progression in Patients with Budd-Chiari Syndrome and Transjugular Shunt (TIPS): A Long-Term Study Using Transient Elastography
Authors: Rössle Martin , Bettinger Dominik , Sturm Lukas , Reincke Marlene , Thimme Robert , Schultheiss Michael
Published: January 2024

Hepatic vein outflow obstruction causes congestion of the liver, leading to necrosis, fibrosis, and portal hypertension (PH). Transjugular intrahepatic portosystemic shunt (TIPS) reduces congestion and PH by providing artificial outflow. The aim of the study was to investigate fibrosis progression in patients with Budd-Chiari syndrome (BCS) and TIPS using transient elastography (TE).
From 2010 to 2022, 25 patients received 80 TEs using FibroScan® (3.2±2.1 per patient). TIPS function was assessed using Doppler ultrasound or radiological intervention. At the time of TE examination, 21 patients had patent shunts. Four patients had occluded shunts but normal pressure gradients during the intervention.
The first TE measurement performed 9.8±6.8 years after the BCS diagnosis showed stiffness values of 24.6±11.5 kPa. A second or last measurement performed 7.0±2.9 years after the first measurement showed similar stiffness values of 24.1±15.7 kPa (p=0.943). Except for three patients, the liver stiffness was always >12 kPa, indicating advanced fibrosis. Stiffness values obtained <5 years (n=8, 23,8±9,2 kPa) or >5 years after the BCS diagnosis (24,9±12,7 kPa) did not differ (p=0.907). In addition, stiffness was not related to the interval between BCS and TIPS implantation (p=0.999). One patient received liver transplantation, and two patients died from non-hepatic causes.
Most patients develop mild to moderate cirrhosis, possibly during the early phase of the disease. Timing of TIPS did not influence fibrosis progression. This and the release of portal hypertension may argue in favor of a generous TIPS implantation practice in patients with BCS.
Puerariae Lobatae Radix Alleviates High Salt Diet Induced Chronic Kidney Disease by Repairing Intestinal Epithelial Barrier and Down-Regulating Fibrotic Signaling
Authors: Wu Peng , Xue Jingwen , Zhu Zhangrui , Yu Yao , Sun Qi , Xie Ming , Wang Benlin , Huang Pengcheng , Feng Zhengyuan , Zhao Jie
Published: January 2024

Chronic kidney disease (CKD) progression can be accelerated by excessive sodium consumption. Gut microbiota dysfunction is a key factor affecting high salt related kidney disease susceptibility. Puerariae Lobatae Radix (PLR), a traditional Chinese medicine and food homologous herb, is known to promote gut microbiota homeostasis, however, its role in renoprotection remains unknown. This study aimed to investigate the efficacy and potential mechanism of PLR to alleviate CKD. An 8-week 2% NaCl-feeding murine model was applied to induce CKD and evaluate the therapeutic effect of PLR supplementary. After gavage for 8 weeks, PLR significantly alleviated CKD-associated creatinine, urine protein increasement and nephritic histopathological injury. Moreover, PLR protected kidney from fibrosis by down-regulating inflammatory response and the canonical Wnt / β-catenin pathway. Further, we found PLR rescued gut microbiota dysbiosis and protected high salt-induced gut barrier dysfunction. We found enrichment of Akkermansia and Bifidobacterium after PLR intervention, the relative abundance of which were in positive correlation with normal maintenance of renal histology and function. Next, fecal microbiota transplantation experiment verified that microbiota from mice treated with PLR could ameliorated kidney tissue injury and intestinal barrier damage. Thus, the positive effect of PLR on CKD was at least partially exerted through gut microbiota reestablishment and down-regulation of the Wnt / β-catenin pathway. Our study provides evidence for new function of PLR on kidney protection and put forward a potential therapeutic strategy target for CKD.
Immobilized Lipases - a Versatile Industrial Tool for Catalyzing Transesterification of Phytosterols Solubilized in Plant Oils to Produce their Fatty Acid Esters
Authors: Basheer Sobhi Awad , Masri Ramez Mohammed
Published: January 2024

The conjugation of phytosterols (PSs) with fatty acids results in producing phytosterol esters (PSEs) characterized with enhanced lipophilicity and improved functional properties of major interest in food and nutraceutical applications. The use of immobilized lipases to catalyze direct transesterification reactions between PSs and plant oils to form PSEs as a green alternative to conventional chemical production methods has attracted interest during the last two decades. The low solubility of PSs in common plant oil triglycerides, typically below 3% at ambient temperatures, remains the main challenge for bringing lipase-catalyzed direct transesterification reactions of PSs and oil triglycerides to commercial scales.

This study focuses on the enzymatic synthesis of PSEs starting from solubilized PSs at concentrations of up to 30% wt./wt. of oil mixtures comprising fatty acid ethyl esters (FAEEs), monoglycerides (MGs), diglycerides (DGs) and triglycerides (TGs) as a homogeneous medium for the direct transesterification reaction. The results of this study show for the first time that the addition of FAEEs into the reaction medium results in altering of the substrate preference of the enzyme making MGs as the favorite fatty acyl group donors for PSs amongst all other fatty acyl donors present in the reaction system. The proposed new enzymatic route allows starting with high concentrations of solubilized PSs making the direct transesterification of oil glycerides attractive for production of PSEs at industrials scales.