bluuebunny/crossref_metadata_2025 huggingface dataset:
CuInSe2 nanotube arrays for efficient solar energy conversion
Authors: Liyanage Wipula Priya Rasika , Nath Manashi
Published: November 2019

Highly uniform and vertically aligned p-type CuInSe2 (CISe) nanotube arrays were fabricated through a unique protocol, incorporating confined electrodeposition on lithographically patterned nanoelectrodes. This protocol can be readily adapted to fabricate nanotube arrays of other photoabsorber and functional materials with precisely controllable design parameters. Ternary CISe nanotube arrays were electrodeposited congruently from a single electrolytic bath and the resulting nanotube arrays were studied through powder X-ray diffraction as well as elemental analysis which revealed compositional purity. Detailed photoelectrochemical (PEC) characterizations in a liquid junction cell were also carried out to investigate the photoconversion efficiency. It was observed that the tubular geometry had a strong influence on the photocurrent response and a 29.9% improvement of the photoconversion efficiency was observed with the nanotube array compared to a thin film geometry fabricated by the same process. More interestingly such enhancement in photoconversion efficiency was obtained when the electrode coverage with the nanotube arrays as photoactive material was only a fraction (~10%) of that for the thin film device. Apart from enhancement in photoconversion efficiency, this versatile technique provides ample opportunities to study novel photovoltaic materials and device design architectures where structural parameters play a key role such as resonant light trapping.
Study on analytical characteristics of Nicotiana tabacum L., cv. Solaris biomass for potential uses in nutrition and biomethane production
Authors: Fatica Antonella , Di Lucia Francesco , Marino Stefano , Alvino Arturo , Zuin Massimo , De Feijter Hayo , Brandt Boudewijn , Tommasini Sergio , Fantuz Francesco , Salimei Elisabetta
Published: November 2019

In order to limit the smoking tobacco sector crisis, a new non-GMO Nicotiana tabacum L. cv. Solaris was proposed as oil seed crop. Residues of oil extraction were successfully used in swine nutrition. The aim of this study was to explore the full potential of this innovative tobacco cultivar as multitasking feedstock non interfering with the food chain. In the triennium 2016–2018, samples from whole plant, inflorescence and stem-leaf biomass were collected in three experimental sites and analysed for chemical constituents, including fibre fractions, sugars and starch, macro-minerals and total alkaloids. The KOH soluble protein content and the amino-acid profile were also investigated as well as the biochemical methane potential. All the analyses were performed according to official methods and results were compared with values reported in literature for conventional lignocellulosic crops and agro-industry residues. The average protein content, ranging from 16.01 to 18.98 g 100 g−1 dry matter respectively for stem-leaf and whole plant samples, and their amino-acid profile are consistent with values reported for standard grass plant. These findings suggest the potential use of cv. Solaris in industrial food formulations. Moreover, considering the average content of both fibre available for fermentations (72.6% of Neutral Detergent Fibre) and oils and fats (7.92 g 100 g−1 dry matter), the whole plant biomass of cv. Solaris showed good attitude to anaerobic fermentation, confirmed by the biochemical methane potential of whole plant (168 Nm3 t−1 organic matter). Similarly, results allow to define the cv. Solaris biomass as a good quality forage apt to ensiling for its chemical composition. The low total alkaloids content of cv. Solaris, in average 0.3 g 100 g−1 dry matter, was previously reported not to affect growth performances and welfare traits of dairy heifers. These are the first results showing the multitasking potential use of cv. Solaris biomass, that could allow the recovery of tobacco cultivation know-how especially in marginal areas.
Analyzing the Bills-Voting Dynamics and Predicting Corruption-Convictions Among Brazilian Congressmen Through Temporal Networks
Authors: Colliri Tiago , Zhao Liang
Published: November 2019

In this paper, we propose a network-based technique to analyze bills-voting data comprising the votes of Brazilian congressmen for a period of 28 years. The voting sessions are initially mapped into static networks, where each node represents a congressman and each edge stands for the similarity of votes between a pair of congressmen. Afterwards, the constructed static networks are converted to temporal networks. Our analyses on the temporal networks capture some of the main political changes happened in Brazil during the period of time under consideration. Moreover, we find out that the bills-voting networks can be used to identify convicted politicians, who commit corruption or other financial crimes. Therefore, we propose two conviction prediction methods, one is based on the highest weighted convicted neighbor and the other is based on link prediction techniques. It is a surprise to us that the high accuracy (up to 90% by the link prediction method) on predicting convictions is achieved only through bills-voting data, without taking into account any financial information beforehand. Such a feature makes possible to monitor congressmen just by considering their legal public activities. In this way, our work contributes to the large scale public data study using complex networks.
Metal Coated Polypropylene Separator with Enhanced Surface Wettability for High Capacity Lithium Metal Batteries
Authors: Din Mir Mehraj Ud , Murugan Ramaswamy
Published: November 2019

Lithium metal batteries are among the strong contenders to meet the increasing energy demands of the modern world. Metallic lithium (Li) is light in weight, possesses very low standard negative electrochemical potential and offers an enhanced theoretical capacity (3860 mA h g−1). As a negative electrode Li paves way to explore variety of elements including oxygen, sulfur and various other complex oxides as potential positive electrodes with a promise of much higher energy densities than that of conventional positive electrodes. However, there are technical challenges in utilizing metallic lithium due to its higher reactivity towards liquid electrolytes and higher affinity to form Li dendrites, leading to serious safety concerns. Here, we report on preparation of niobium (Nb) metal-coated binder-free and highly hydrophilic polypropylene separator prepared via radio frequency (RF) magnetron sputtering. Thin layer of niobium metal (Nb) particles were deposited onto the polypropylene (PP) sheet for various time periods to achieve desired coating thickness. The as-prepared separator revealed excellent hydrophilic behaviour due to enhanced surface wettability. Symmetric cells display reduced interface resistance and uniform voltage profiles for 1000 cycles with reduced polarization at higher current densities suggesting smooth stripping and plating of Li and homogeneous current distribution at electrode/electrolyte interface under room temperature conditions. Nb nanolayer protected separator with LiNi0.33M0.33Co0.33O2 (LNMC) and composite sulfur cathodes revealed an enhanced cycling stability.
Identification of candidate molecular targets of the novel antineoplastic antimitotic NP-10
Authors: Yokoyama Takuya , Yukuhiro Masaki , Iwasaki Yuka , Tanaka Chika , Sankoda Kazunari , Fujiwara Risa , Shibuta Atsushi , Higashi Taishi , Motoyama Keiichi , Arima Hidetoshi , Yoshida Kazumasa , Sugimoto Nozomi , Morimoto Hiroyuki , Kosako Hidetaka , Ohshima Takashi , Fujita Masatoshi
Published: November 2019

We previously reported the identification of a novel antimitotic agent with carbazole and benzohydrazide structures: N′-[(9-ethyl-9H-carbazol-3-yl)methylene]-2-iodobenzohydrazide (code number NP-10). However, the mechanism(s) underlying the cancer cell-selective inhibition of mitotic progression by NP-10 remains unclear. Here, we identified NP-10-interacting proteins by affinity purification from HeLa cell lysates using NP-10-immobilized beads followed by mass spectrometry. The results showed that several mitosis-associated factors specifically bind to active NP-10, but not to an inactive NP-10 derivative. Among them, NUP155 and importin β may be involved in NP-10-mediated mitotic arrest. Because NP-10 did not show antitumor activity in vivo in a previous study, we synthesized 19 NP-10 derivatives to identify more effective NP-10-related compounds. HMI83-2, an NP-10-related compound with a Cl moiety, inhibited HCT116 cell tumor formation in nude mice without significant loss of body weight, suggesting that HMI83-2 is a promising lead compound for the development of novel antimitotic agents.
Segregation of age-related skin microbiome characteristics by functionality
Authors: Kim Hye-Jin , Kim Jin Ju , Myeong Nu Ri , Kim Taeyune , Kim DooA , An Susun , Kim Hanbyul , Park Taehun , Jang Sue Im , Yeon Jae Ho , Kwack Ilyoung , Sul Woo Jun
Published: November 2019

Although physiological changes are the most evident indicators of skin aging by alteration of the skin’s structure and function, we question whether skin aging is also affected by the structure and assembly process of the skin microbiome. We analysed the skin microbiomes of 73 healthy Chinese women in two age groups (25–35 years old and 56–63 years old) using 16S rRNA gene amplicon sequencing; the overall microbiome structure was significantly different between the two age groups. An analysis using ecological theory to evaluate the process of microbial community assembly processes revealed that the microbiomes of the older group were formed under a greater influence of the niche-based process, with the network of microbes being more collapsed than that of the younger group. Inferred metagenomic functional pathways associated with replication and repair were relatively more predominant in the younger group whereas, among the various metabolism-related pathways, those associated with biodegradation were more predominant in the older group. Interestingly, we found two segregated sub-typing patterns in the younger group which were also observed in the skin microbiomes of young Chinese women living in four other cities in China. The results of our study highlights candidate microbes and functional pathways that are important for future research into preventing skin aging and which could lead to a comprehensive understanding of age-related skin microbiome characteristics.
The VP3 protein of duck hepatitis A virus mediates host cell adsorption and apoptosis
Authors: Lai Yalan , Zeng Ni , Wang Mingshu , Cheng Anchun , Yang Qiao , Wu Ying , Jia Renyong , Zhu Dekang , Zhao XinXin , Chen Shun , Liu Mafeng , Zhang Shaqiu , Wang Yin , Xu Zhiwen , Chen Zhengli , zhu Ling , Luo Qihui , Liu Yunya , Yu Yanling , Zhang Ling , Huang Juan , Tian Bin , Pan Leichang , Ur Rehman Mujeeb , Chen Xiaoyue
Published: November 2019

Duck hepatitis A virus (DHAV) causes an infectious disease that mainly affects 1- to 4-week-old ducklings, resulting in considerable loss to the duck industry. Although there have been many studies on DHAV in recent years, the effects on host infection and pathogenesis of DHAV-1 remain largely unknown. This study investigated the effects of the DHAV-1 structural protein VP3 on DHAV-1 virus adsorption and apoptosis to explore the role of VP3 in the viral life cycle. The effects of DHAV-1 VP3 and an antibody against the protein on virion adsorption was analyzed by qRT-PCR. The results showed that the virus copy number for the rabbit anti-VP3 IgG-treated group was significantly lower than that for the negative control group but higher than that for the rabbit anti-DHAV-1 IgG-treated group. This result indicates that VP3 mediates DHAV-1 virus adsorption but that it is not the only protein that involved in this process. In addition, a eukaryotic recombinant plasmid, pCAGGS/VP3, was transfected into duck embryo fibroblasts (DEFs), and the apoptotic rate was determined by DAPI staining, the TUNEL assay and flow cytometry. DAPI staining showed nucleus fragmentation and nuclear edge shifting. TUNEL assay results revealed yellow nuclei, and flow cytometry indicated a significant increase in the apoptotic rate. In addition, qRT-PCR revealed increased in the transcriptional levels of the apoptotic caspase-3, −8 and −9, with the largest increase for caspase-3, followed by caspase-9 and caspase-8. Enzyme activity analysis confirmed these results. Furthermore, the VP3 protein decreased the mitochondrial membrane potential, and the transcriptional levels of the proapoptotic factors Bak, Cyt c and Apaf-1 in the mitochondrial apoptotic pathway were significantly upregulated. These data suggest that expression of VP3 in DEFs induces apoptosis and may primarily activate caspase-3-induced apoptosis through mitochondrion-mediated intrinsic pathways. The findings provide scientific data to clarify DHAV-1 infection and pathogenesis.
Postoperative serum metabolites of patients on a low carbohydrate ketogenic diet after pancreatectomy for pancreatobiliary cancer: a nontargeted metabolomics pilot study
Authors: Kang Chang Moo , Yun BoKyeong , Kim Minju , Song Mina , Kim Yeon-hee , Lee Sung Hwan , Lee Hosun , Lee Song Mi , Lee Seung-Min
Published: November 2019

A ketogenic diet is a potential adjuvant cancer therapy that limits glucose availability to tumours while fuelling normal tissues with ketone bodies. We examined the effect of a low carbohydrate ketogenic diet (LCKD) (80% kcal from fat, ketogenic ratio 1.75:1, w/w) compared to a general hospital diet (GD) on serum metabolic profiles in patients (n = 18, ≥ 19 years old) who underwent pancreatectomy for pancreatobiliary cancer. Serum samples collected preoperatively (week 0) and after the dietary intervention (week 2) were analysed with a nontargeted metabolomics approach using liquid chromatography–tandem mass spectrometry. Serum β-hydroxybutyrate and total ketone levels significantly increased after 2 weeks of LCKD compared to GD (p < 0.05). Principal component analysis score plots and orthogonal partial least squares discriminant analysis also showed significant differences between groups at week 2, with strong validation. In all, 240 metabolites differed between LCKD and GD. Pathways including glycerophospholipid and sphingolipid metabolisms were significantly enriched in the LCKD samples. LCKD decreased C22:1-ceramide levels, which are reported to be high in pancreatic cancer, while increasing lysophosphatidylcholine (18:2), uric acid, citrulline, and inosine levels, which are generally low in pancreatic cancer. Postoperative LCKD might beneficially modulate pancreatic cancer-related metabolites in patients with pancreatobiliary cancer.
Distinctive patterns of peripheral neuropathy across the spectrum of plasma cell disorders
Authors: Byun Ja Min , Kwon Young Nam , Koh Youngil , Yoon Sung-Soo , Sung Jung-Joon , Kim Inho
Published: November 2019

Many patients with plasma cell disorders suffer from peripheral neuropathy, but differential diagnosis with chronic inflammatory demyelinating polyneuropathy (CIDP) is difficult. We aimed to (1) identify factors useful for differential diagnosis between peripheral neuropathy associated with plasma cell disorders versus CIDP and (2) determine whether neuropathy presentations and severity varied across the spectrum of different plasma cell disorders. A retrospective chart review of 18 monoclonal gammopathy of unknown significance (MGUS) patients, 15 POEMS syndrome patients and 34 CIDP patients between January 2005 and December 2016 was conducted. The peripheral neuropathy associated with plasma cell disorders seemed to be more sensory oriented compared to CIDP. MGUS patients were significantly older than CIDP patients (median age 70 vs. 59, respectively, p = 0.027). POEMS syndrome patients showed significantly higher platelet count at the time of neuropathy presentation compared to CIDP (p = 0.028). Lambda type MGUS patients were associated with less severe symptoms compared to POEMS syndrome patients despite harboring lambda monoclonal gammopathy as a common denominator. Kappa type MGUS patients showed predominantly axonal type neuropathy compared to its counterpart and POEMS syndrome. Careful inspection of clinical profiles and symptoms of patients presenting with neuropathy can help to discriminate those with underlying plasma cell disorders. The phenotype of neuropathy, platelet count and age at presentation seem to be the most useful indicators.
A pilot study of peripheral blood DNA methylation models as predictors of knee osteoarthritis radiographic progression: data from the Osteoarthritis Initiative (OAI)
Authors: M. Dunn Christopher , Nevitt Michael C. , Lynch John A. , Jeffries Matlock A.
Published: November 2019

Knee osteoarthritis (OA) is a leading cause of chronic disability worldwide, but no diagnostic or prognostic biomarkers are available. Increasing evidence supports epigenetic dysregulation as a contributor to OA pathogenesis. In this pilot study, we investigated epigenetic patterns in peripheral blood mononuclear cells (PBMCs) as models to predict future radiographic progression in OA patients enrolled in the longitudinal Osteoarthritis Initiative (OAI) study. PBMC DNA was analyzed from baseline OAI visits in 58 future radiographic progressors (joint space narrowing at 24 months, sustained at 48 months) compared to 58 non-progressors. DNA methylation was quantified via Illumina microarrays and beta- and M-values were used to generate linear classification models. Data were randomly split into a 60% development and 40% validation subsets, models developed and tested, and cross-validated in a total of 40 cycles. M-value based models outperformed beta-value based models (ROC-AUC 0.81 ± 0.01 vs. 0.73 ± 0.02, mean ± SEM, comparison p = 0.002), with a mean classification accuracy of 73 ± 1% (mean ± SEM) for M- and 69 ± 1% for beta-based models. Adjusting for covariates did not significantly alter model performance. Our findings suggest that PBMC DNA methylation-based models may be useful as biomarkers of OA progression and warrant additional evaluation in larger patient cohorts.
Crustal movement and strain distribution in East Asia revealed by GPS observations
Authors: Hao Ming , Li Yuhang , Zhuang Wenquan
Published: November 2019

East Asia is bounded by the Indian plate to the southwest and the Pacific and Philippine plates to the east, and has undergone complex tectonic evolution since ~55 Ma. In this study, we collect and process three sources of GPS datasets, including GPS observations, GPS positioning time series, and published GPS velocities, to derive unified velocity and strain rate fields for East Asia. We observed southward movement and arc-parallel extension along the Ryukyu Arc and propose that the maximum principal stress axis (striking NEE) in North China could be mainly induced by westward subduction of the Pacific plate and the southward movement of the Ryukyu Arc. The large EW-trending sinistral shear zone that bounds North China has been created by eastward movement of South China to the south and westward subduction of the Pacific plate to the north. GPS velocity profiles and strain rates also demonstrate that crustal deformation in mainland China is controlled by northeastward collision of the Indian plate into Eurasia and westward subduction of the Pacific and Philippine Sea plates beneath Eurasia. In particular, the India-Eurasia continental collision has the most extensive impact, which can reach as far as the southern Lake Baikal. The viscous behavior of the subducting Pacific slab also drives interseismic deformation of North China. The crustal deformation caused by Philippine oceanic subduction is small and is limited to the region between the southeast coast of mainland China and Taiwan island. However, the principal compressional strain around eastern Taiwan is the largest in the region.
A standalone bioreactor system to deliver compressive load under perfusion flow to hBMSC-seeded 3D chitosan-graphene templates
Authors: Lovecchio Joseph , Gargiulo Paolo , Vargas Luna Jose Luis , Giordano Emanuele , Sigurjónsson Ólafur Eysteinn
Published: November 2019

The availability of engineered biological tissues holds great potential for both clinical applications and basic research in a life science laboratory. A prototype standalone perfusion/compression bioreactor system was proposed to address the osteogenic commitment of stem cells seeded onboard of 3D chitosan-graphene (CHT/G) templates. Testing involved the coordinated administration of a 1 mL/min medium flow rate together with dynamic compression (1% strain at 1 Hz; applied twice daily for 30 min) for one week. When compared to traditional static culture conditions, the application of perfusion and compression stimuli to human bone marrow stem cells using the 3D CHT/G template scaffold induced a sizable effect. After using the dynamic culture protocol, there was evidence of a larger number of viable cells within the inner core of the scaffold and of enhanced extracellular matrix mineralization. These observations show that our novel device would be suitable for addressing and investigating the osteogenic phenotype commitment of stem cells, for both potential clinical applications and basic research.
Altered fluvial patterns in North China indicate rapid climate change linked to the Permian-Triassic mass extinction
Authors: Zhu Zhicai , Liu Yongqing , Kuang Hongwei , Benton Michael J. , Newell Andrew J. , Xu Huan , An Wei , Ji Shu’an , Xu Shichao , Peng Nan , Zhai Qingguo
Published: November 2019

The causes of the severest crisis in the history of life around the Permian-Triassic boundary (PTB) remain controversial. Here we report that the latest Permian alluvial plains in Shanxi, North China, went through a rapid transition from meandering rivers to braided rivers and aeolian systems. Soil carbonate carbon isotope (δ13C), oxygen isotope (δ18O), and geochemical signatures of weathering intensity reveal a consistent pattern of deteriorating environments (cool, arid, and anoxic conditions) and climate fluctuations across the PTB. The synchronous ecological collapse is confirmed by a dramatic reduction or disappearance of dominant plants, tetrapods and invertebrates and a bloom of microbially-induced sedimentary structures. A similar rapid switch in fluvial style is seen worldwide (e.g. Karoo Basin, Russia, Australia) in terrestrial boundary sequences, all of which may be considered against a background of global marine regression. The synchronous global expansion of alluvial fans and high-energy braided streams is a response to abrupt climate change associated with aridity, hypoxia, acid rain, and mass wasting. Where neighbouring uplands were not uplifting or basins subsiding, alluvial fans are absent, but in these areas the climate change is evidenced by the disruption of pedogenesis.
Non-Gaussian models of diffusion weighted imaging for detection and characterization of prostate cancer: a systematic review and meta-analysis
Authors: Brancato V. , Cavaliere C. , Salvatore M. , Monti S.
Published: November 2019

The importance of Diffusion Weighted Imaging (DWI) in prostate cancer (PCa) diagnosis have been widely handled in literature. In the last decade, due to the mono-exponential model limitations, several studies investigated non-Gaussian DWI models and their utility in PCa diagnosis. Since their results were often inconsistent and conflicting, we performed a systematic review of studies from 2012 examining the most commonly used Non-Gaussian DWI models for PCa detection and characterization. A meta-analysis was conducted to assess the ability of each Non-Gaussian model to detect PCa lesions and distinguish between low and intermediate/high grade lesions. Weighted mean differences and 95% confidence intervals were calculated and the heterogeneity was estimated using the I2 statistic. 29 studies were selected for the systematic review, whose results showed inconsistence and an unclear idea about the actual usefulness and the added value of the Non-Gaussian model parameters. 12 studies were considered in the meta-analyses, which showed statistical significance for several non-Gaussian parameters for PCa detection, and to a lesser extent for PCa characterization. Our findings showed that Non-Gaussian model parameters may potentially play a role in the detection and characterization of PCa but further studies are required to identify a standardized DWI acquisition protocol for PCa diagnosis.
‘Normal’ hearing thresholds and fundamental auditory grouping processes predict difficulties with speech-in-noise perception
Authors: Holmes Emma , Griffiths Timothy D.
Published: November 2019

Understanding speech when background noise is present is a critical everyday task that varies widely among people. A key challenge is to understand why some people struggle with speech-in-noise perception, despite having clinically normal hearing. Here, we developed new figure-ground tests that require participants to extract a coherent tone pattern from a stochastic background of tones. These tests dissociated variability in speech-in-noise perception related to mechanisms for detecting static (same-frequency) patterns and those for tracking patterns that change frequency over time. In addition, elevated hearing thresholds that are widely considered to be ‘normal’ explained significant variance in speech-in-noise perception, independent of figure-ground perception. Overall, our results demonstrate that successful speech-in-noise perception is related to audiometric thresholds, fundamental grouping of static acoustic patterns, and tracking of acoustic sources that change in frequency. Crucially, speech-in-noise deficits are better assessed by measuring central (grouping) processes alongside audiometric thresholds.
Possible indication of endoscopic resection in undifferentiated early gastric cancer
Authors: Ryu Dae Gon , Choi Cheol Woong , Kim Su Jin , Kang Dae Hwan , Kim Hyung Wook , Park Su Bum , Nam Hyeong Seok
Published: November 2019

Endoscopic resection for early gastric cancer (EGC) without lymph node metastasis may be a valuable treatment option. To date, endoscopic resection for undifferentiated EGC is being investigated. We evaluated the risk of lymph node metastasis in undifferentiated EGC by examining the preoperative endoscopic findings and operated pathologic specimen. The medical records of patients who underwent surgical resection because of undifferentiated EGC between November 2008 and December 2015 were reviewed retrospectively. The risk factors associated with lymph node metastasis and the lymph node metastasis rate in the expanded indication of undifferentiated EGC were evaluated. A total of 376 patients with undifferentiated EGC (233 signet ring cell type and 143 poorly differentiated type) were analyzed. Lymph node metastasis was found in 9.8% of the patients. Among the patients who met the expanded criteria (59 patients), only one patient had lymph node metastasis (signet ring cell type without ulceration and 15 mm in size). The risk factors associated with lymph node metastasis were lesion size >20 mm (OR 3.013), scar deformity (OR 2.248), surface depression (OR 2.360), submucosal invasion (OR 3.427), and lymphovascular invasion (OR 6.296). Before endoscopic resection of undifferentiated EGC, careful selection of patients should be considered. The undifferentiated EGC with size ≥15 mm, scar deformity, surface depression, submucosal invasion, and lymphovascular invasion should be considered surgical resection instead of endoscopic resection.
Transcriptome analysis of miRNA and mRNA in the livers of pigs with highly diverged backfat thickness
Authors: Xing Kai , Zhao Xitong , Ao Hong , Chen Shaokang , Yang Ting , Tan Zhen , Wang Yuan , Zhang Fengxia , Liu Yibing , Ni HeMin , Guo Yong , Hou Zhuocheng , Wang Chuduan
Published: November 2019

Fat deposition is very important in pig production, and its mechanism is not clearly understood. MicroRNAs (miRNAs) play critical roles in fat deposition and energy metabolism. In the current study, we investigated the mRNA and miRNA transcriptome in the livers of Landrace pigs with extreme backfat thickness to explore miRNA-mRNA regulatory networks related to lipid deposition and metabolism. A comparative analysis of liver mRNA and miRNA transcriptomes from pigs (four pigs per group) with extreme backfat thickness was performed. We identified differentially expressed genes from RNA-seq data using a Cufflinks pipeline. Seventy-one differentially expressed genes (DEGs), including twenty-eight well annotated on the porcine reference genome genes, were found. The upregulation genes in pigs with higher backfat thickness were mainly involved in fatty acid synthesis, and included fatty acid synthase (FASN), glucokinase (GCK), phosphoglycerate dehydrogenase (PHGDH), and apolipoprotein A4 (APOA4). Cytochrome P450, family 2, subfamily J, polypeptide 34 (CYP2J34) was lower expressed in pigs with high backfat thickness, and is involved in the oxidation of arachidonic acid. Moreover, 13 differentially expressed miRNAs were identified. Seven miRNAs were associated with fatty acid synthesis, lipid metabolism, and adipogenic differentiation. Based on comprehensive analysis of the transcriptome of both mRNAs and miRNAs, an important regulatory network, in which six DEGs could be regulated by differentially expressed miRNAs, was established for fat deposition. The negative correlate in the regulatory network including, miR-545-5p and GRAMD3, miR-338 and FASN, and miR-127, miR-146b, miR-34c, miR-144 and THBS1 indicate that direct suppressive regulation may be involved in lipid deposition and energy metabolism. Based on liver mRNA and miRNA transcriptomes from pigs with extreme backfat thickness, we identified 28 differentially expressed genes and 13 differentially expressed miRNAs, and established an important miRNA-mRNA regulatory network. This study provides new insights into the molecular mechanisms that determine fat deposition in pigs.
Environmental sustainability assessment of tropical dairy buffalo farming vis-a-vis sustainable feed replacement strategy
Authors: Reddy P. Ravi Kanth , Kumar D. Srinivasa , Rao E. Raghava , Seshiah Ch. Venkata , Sateesh K. , Rao K. Ananda , Reddy Y. Pradeep Kumar , Hyder Iqbal
Published: November 2019

Feeding management in dairy animals is crucial for ensuring optimal production apart from making the farming as a whole, a more sustainable activity. In our study we evaluated the production and environmental effects of two different feeding regimens i.e., one dominated by traditional cottonseed meal (CSM) and other with coated urea (slow release urea - SRU) as a replacement for CSM on dairy buffalo production. The SRU at 2% level was evaluated by conducting two different trials using twelve lactating Murrah buffaloes and four adult Murrah buffalo bulls. Neither diet nor dry period management showed any substantial effect on milk components, intakes, nutrients’ digestibility coefficients, and nutritive values. The SRU diet revealed increased (P < 0.01) rumen pH, ammonia nitrogen, volatile fatty acids, and microbial nitrogen yield, which were interacted with time of post-prandial sampling. The dynamics of nitrogen metabolism revealed unaltered N-based parameters, except for degradable-N intake and serum urea-N at 3 hr post-feeding. The CSM replacements did not influence (P > 0.05) the residual feed intake, but led to an enhanced milk retention efficiency of nitrogen, calcium, and phosphorus contents, thus reducing their impact on soil pollution and eutrophication of water bodies. Despite an unaltered (P > 0.05) enteric methane emission, SRU diets achieved in decreasing manure methane and nitrous oxide emission. Furthermore, the virtual water flow and lifecycle assessment revealed a water sparing effect and low carbon foot print per unit milk production. In summary, the CSM replacements with SRU could achieve an economical and eco-friendly production system from animal nutrition perspective.
Time-lapse image analysis for whole colony growth curves and daily distribution of the cell number per colony during the expansion of mesenchymal stem cells
Authors: Mizuno Mitsuru , Katano Hisako , Shimozaki Yuri , Sanami Sho , Ozeki Nobutake , Koga Hideyuki , Sekiya Ichiro
Published: November 2019

Mesenchymal stem cells from the synovium (synovial MSCs) are attractive for cartilage and meniscus regeneration therapy. We developed a software program that can distinguish individual colonies and automatically count the cell number per colony using time-lapse images. In this study, we investigated the usefulness of the software and analyzed colony formation in cultured synovial MSCs. Time-lapse image data were obtained for 14-day-expanded human synovial MSCs. The cell number per colony (for 145 colonies) was automatically counted from phase-contrast and nuclear-stained images. Colony growth curves from day 1 to day 14 (for 140 colonies) were classified using cluster analysis. Correlation analysis of the distribution of the cell number per colony at 14 days versus that number at 1–14 days revealed a correlation at 7 and 14 days. We obtained accurate cell number counts from phase-contrast images. Individual colony growth curves were classified into three main groups and subgroups. Our image analysis software has the potential to improve the evaluation of cell proliferation and to facilitate successful clinical applications using MSCs.
D-sorbitol can keep the viscosity of dispersive ophthalmic viscosurgical device at room temperature for long term
Authors: Nogami Eiji , Watanabe Ippei , Hoshi Hirotaka , Kasahara Masakazu , Honda Naoto , Sato Miwako , Suzuki Kiyoshi
Published: November 2019

The combination of 3% sodium hyaluronate (HA) and 4% sodium chondroitin sulfate (CS) is used as a dispersive ophthalmic viscosurgical device (OVD) during cataract surgery. For most OVDs containing HA, storage at 2–8 °C is recommended to preserve product characteristics. In order to develop a dispersive OVD that can be stored at room temperature, in this study, we searched additives which can stably maintain the viscosity, a key parameter of OVD, under preservation stability testing at 60 °C. The addition of D-sorbitol to a combination OVD, 3% HA and 4% CS, suppressed the reduction in viscosity compared with other OVDs with or without additives. The addition of D-sorbitol was also effective in improving the residual viscosity of the combination OVD after thermal treatment and light irradiation. Moreover, the OVD containing D-sorbitol can be stored at 25 °C with stably maintaining the initial viscosity for at least 24 months. In conclusion, the new dispersive OVD, 3% HA, 4% CS, and 0.5% D-sorbitol, can be stored at room temperature instead of under cold conditions and may represent an attractive option for clinical use because it is not necessary to bring the product to room temperature prior to use.
Plant sphingolipids promote extracellular vesicle release and alleviate amyloid-β pathologies in a mouse model of Alzheimer’s disease
Authors: Yuyama Kohei , Takahashi Kaori , Usuki Seigo , Mikami Daisuke , Sun Hui , Hanamatsu Hisatoshi , Furukawa Junichi , Mukai Katsuyuki , Igarashi Yasuyuki
Published: November 2019

The accumulation of amyloid-β protein (Aβ) in brain is linked to the early pathogenesis of Alzheimer’s disease (AD). We previously reported that neuron-derived exosomes promote Aβ clearance in the brains of amyloid precursor protein transgenic mice and that exosome production is modulated by ceramide metabolism. Here, we demonstrate that plant ceramides derived from Amorphophallus konjac, as well as animal-derived ceramides, enhanced production of extracellular vesicles (EVs) in neuronal cultures. Oral administration of plant glucosylceramide (GlcCer) to APP overexpressing mice markedly reduced Aβ levels and plaque burdens and improved cognition in a Y-maze learning task. Moreover, there were substantial increases in the neuronal marker NCAM-1, L1CAM, and Aβ in EVs isolated from serum and brain tissues of the GlcCer-treated AD model mice. Our data showing that plant ceramides prevent Aβ accumulation by promoting EVs-dependent Aβ clearance in vitro and in vivo provide evidence for a protective role of plant ceramides in AD. Plant ceramides might thus be used as functional food materials to ameliorate AD pathology.
Prescribed fire maintains host plants of a rare grassland butterfly
Authors: Adamidis George C. , Swartz Mark T. , Zografou Konstantina , Sewall Brent J.
Published: November 2019

As grassland ecosystems transform globally due to anthropogenic pressures, improvements in our understanding of the effect of management on rare and threatened species in such landscapes has become urgent. Although prescribed fire is a very efficient tool for habitat restoration and endangered species management on fire-adapted ecosystems, the specific mechanisms underlying potential effects of burning on population dynamics of butterfly host plants are poorly understood. We analyzed a 12-year dataset (2004–2015), combining violet abundance, habitat physiognomy and fire history data from a fire-managed system, to determine factors influencing the spatiotemporal distribution and abundance of violets (Viola spp.), the host plants of the threatened eastern regal fritillary (Speyeria idalia idalia) butterfly. Our results demonstrate a critical role for fire in driving both presence and abundance of violets, suggesting management with prescribed fires can effectively promote butterfly host plants. In addition, we determined the character of habitats associated with violet presence and abundance, in particular a strong positive association with biocrusts. These results provide a roadmap for efficient site selection to increase the effectiveness of restoration efforts, including assessment of potential reintroduction sites for regal fritillary and other grassland butterflies and actions to promote the re-establishment of host plants in these sites.
Magnetic field assisted beam-scanning leaky-wave antenna utilizing one-way waveguide
Authors: Hong Lujun , You Yun , Shen Qian , Wang Yazhou , Liu Xing , Zhang Hang , Wu Chiaho , Shen Linfang , Deng Xiaohua , Xiao Sanshui
Published: November 2019

We propose a Leaky-Wave Antenna (LWA) based on one-way yttrium-iron-garnet (YIG)-air-metal waveguide. We first analyze the dispersion of the LWA, showing the one-way feature and the radiation loss. Owing to the unique one-way dispersive property, the beam radiated from the LWA can have very narrow beam width, at the same time having large scanning angle. The main beam angle obtained by full-wave simulation is consistent with our theoretical prediction with the aid of the dispersion. For a given frequency, we can realize continuous beam scanning by varying the magnetic field, where the 3 dB beam width is much narrower than previously demonstrated. Our results pave a new way to realize continuous angle scanning at a fix frequency for modern communications.
Brain surgery in combination with tyrosine kinase inhibitor and whole brain radiotherapy for epidermal growth factor receptor-mutant non-small-cell lung cancer with brain metastases
Authors: Lee Hsin-Hua , Chen Chien-Hung , Chuang Hung-Yi , Huang Yu-Wei , Huang Ming-Yii
Published: November 2019

The role of brain surgery (BS) on the survival of patients with non-small-cell lung cancer (NSCLC) and brain metastases (BM), particularly those with epidermal growth factor receptor (EGFR) mutations under tyrosine kinase inhibitors (TKIs) is yet to be defined. We aimed to investigate whether BS could improve the survival of patients in addition to the combination of TKIs and whole brain radiotherapy (WBRT). A cohort of 1394 NSCLC patients between 2011 and 2016 was retrospectively studied. One hundred patients with BM receiving TKI + RT were enrolled. Forty patients (40%) received TKI + BS + RT, and 60 patients (60%) received TKI + RT. Survival time was calculated from the date of BM diagnoses to the date of death or last follow-up. With a median follow-up of 25.6 months (95% CI, 18.6–35.7), the median survival after BM was 18.2 months (95% CI, 10.8 to 27.4) in the TKI + BS + RT group and 11.8 months (95% CI, 5.2 to18) in the TKI + RT group. Cox proportional hazards regression model for the patients with the largest BM over 1 cm showed that TKI + BS + RT group was associated with improved survival relative to TKI + RT group (HR, 0.49; 95% CI, 0.29 to 0.83; P = 0.008). BS adds significant survival benefits in addition to TKIs and WBRT, especially for patients with EGFR-mutant NSCLC and the largest BM over 1 cm.
Andean Tectonics and Mantle Dynamics as a Pervasive Influence on Amazonian Ecosystem
Authors: Bicudo Tacio Cordeiro , Sacek Victor , de Almeida Renato Paes , Bates John M. , Ribas Camila Cherem
Published: November 2019

The Amazonian landscape evolution is the result of the combined effect of Andean tectonism, climate and the Earth’s interior dynamics. To reconstruct the landscape evolution and its influence on paleoenvironmental variations within Amazonia since the Oligocene, we conducted numerical experiments that incorporate different surface and geodynamic processes, reproducing many paleogeographic features as inferred from the sedimentary record. We show that the evolution of the drainage pattern gradually reduced the area of sedimentation derived from the Guiana and Brazilian shields while expanded the Andean derived deposits during the Miocene, affecting the nutrient availability. First order biotic habitats were inferred from these paleogeographical reconstructions, showing an eastward expansion of várzea and terra firme forests and consequent retraction of igapó forests, with a millennial-scale reconfiguration of a mosaic of habitats in the lowlands. We conclude that this dynamism probably guided the observed patterns of speciation in the most biodiverse biome on Earth.
TmDorX2 positively regulates antimicrobial peptides in Tenebrio molitor gut, fat body, and hemocytes in response to bacterial and fungal infection
Authors: Keshavarz Maryam , Jo Yong Hun , Park Ki Beom , Ko Hye Jin , Edosa Tariku Tesfaye , Lee Yong Seok , Han Yeon Soo
Published: November 2019

Dorsal, a member of the nuclear factor-kappa B (NF-κB) family of transcription factors, is a critical downstream component of the Toll pathway that regulates the expression of antimicrobial peptides (AMPs) against pathogen invasion. In this study, the full-length ORF of Dorsal was identified from the RNA-seq database of the mealworm beetle Tenebrio molitor (TmDorX2). The ORF of TmDorX2 was 1,482 bp in length, encoding a polypeptide of 493 amino acid residues. TmDorX2 contains a conserved Rel homology domain (RHD) and an immunoglobulin-like, plexins, and transcription factors (IPT) domain. TmDorX2 mRNA was detected in all developmental stages, with the highest levels observed in 3-day-old adults. TmDorX2 transcripts were highly expressed in the adult Malpighian tubules (MT) and the larval fat body and MT tissues. After challenging the larvae with Staphylococcus aureus and Escherichia coli, the TmDorX2 mRNA levels were upregulated 6 and 9 h post infection in the whole body, fat body, and hemocytes. Upon Candida albicans challenge, the TmDorX2 mRNA expression were found highest at 9 h post-infection in the fat body. In addition, TmDorX2-knockdown larvae exposed to E. coli, S. aureus, or C. albicans challenge showed a significantly increased mortality rate. Furthermore, the expression of 11 AMP genes was downregulated in the gut and fat body of dsTmDorX2-injected larvae upon E. coli challenge. After C. albicans and S. aureus challenge of dsTmDorX2-injected larvae, the expression of 11 and 10 AMPs was downregulated in the gut and fat body, respectively. Intriguingly, the expression of antifungal transcripts TmTenecin-3 and TmThaumatin-like protein-1 and -2 was greatly decreased in TmDorX2-silenced larvae in response to C. albicans challenge, suggesting that TmDorX2 regulates antifungal AMPs in the gut in response to C. albicans infection. The AMP expression profiles in the fat body, hemocytes, gut, and MTs suggest that TmDorX2 might have an important role in promoting the survival of T. molitor larvae against all mentioned pathogens.
Author Correction: Strategies to Mitigate Variability in Engineering Human Nasal Cartilage
Authors: Andrews Stephen H. J. , Kunze Melanie , Mulet-Sierra Aillette , Williams Lynn , Ansari Khalid , Osswald Martin , Adesida Adetola B.
Published: November 2019

An amendment to this paper has been published and can be accessed via a link at the top of the paper.
Combination of MALDI-TOF MS and UHPLC-ESI-MS for the characterization of lytic polysaccharide monooxygenase activity
Authors: Silva Caio de Oliveira Gorgulho , Teixeira Tallyta Santos , Rodrigues Kelly Barreto , Souza Amanda Araújo , Monclaro Antonielle Vieira , Mendes Thaís Demarchi , Ribeiro José Antônio de Aquino , Gonçalves de Siqueira Félix , Fávaro Léia Cecília de Lima , Abdelnur Patrícia Verardi
Published: November 2019

Two new mass spectrometry methods, MALDI-TOF MS and hydrophilic interaction UHPLC-ESI-MS, were developed for the characterization of cellulose-active lytic polysaccharide monooxygenases, expanding the analytical toolbox for the study of these enzymes.
MOF-derived nanostructured catalysts for low-temperature ammonia synthesis
Authors: Luz Ignacio , Parvathikar Sameer , Carpenter Michael , Bellamy Timothy , Amato Kelly , Carpenter John , Lail Marty
Published: November 2019

Nanostructured catalysts for low-temperature ammonia synthesis have been developed via thermal treatment under nitrogen of Ru-containing MOFs.
The regulatory effects of phytosterol esters (PSEs) on gut flora and faecal metabolites in rats with NAFLD
Authors: Song Lihua , li Yating , Qu Dan , Ouyang Pengling , Ding Xinwen , Wu PeiYing , Guan Qi , Yang Li
Published: November 2019

Nonalcoholic fatty liver disease (NAFLD) can be aggravated by dysregulation of intestinal flora. Phytosterol ester could more effectively regulate the gut flora and related fecal metabolites which were correlated with hepatic steatosis in NAFLD rats.
Multi-functional switches of ditopic ligands with azobenzene central bridges at a molecular scale
Authors: Imen Hnid , Xiaonan Sun , Denis Frath , Frédéric Lafolet , Jean-Christophe Lacroix
Published: November 2019

This paper reports multi-functional switches from a ditopic ligand bpy-azo-bpy. The molecule can adopt a cis-to-trans isomerization at the bipyridine terminals and can switch between their TRANS and CIS configurations at the central azobenzene unit by protonation or by light irradiation.
Revealing inconsistencies in X-ray width methods for nanomaterials
Authors: Kunka Cody , Boyce Brad L. , Foiles Stephen M. , Dingreville Rémi
Published: November 2019

Since the landmark development of the Scherrer Method a century ago, multiple generations of width methods for X-ray diffraction originated to non-invasively and rapidly characterize the property-controlling sizes of nanomaterials.
A layer-by-layer strategy for the scalable preparation of uniform interfacial electrocatalysts with high structural tunability: a case study of a CoNP/N,P-graphene catalyst complex
Authors: Lu Limei , Zhang Yihe , Yu Xuelian , Zhang Yi , Ma Zequn , An Qi
Published: November 2019

Scalable engineered interfacial electrocatalyst: a combination of LbL can scalably prepare CoNP/N, P-graphene with high componential and structural tunability. This method is applicable on various 2D and 3D conductive substrates.
Photostimulated control of luminescence quantum yield for colloidal Ag2S/2-MPA quantum dots
Authors: Ovchinnikov Oleg V. , Aslanov Sergey V. , Smirnov Mikhail S. , Grevtseva Irina G. , Perepelitsa Aleksey S.
Published: November 2019

In this paper, we present the results on photoinduced formation of colloidal Ag2S quantum dots with sizes of 1.5–3 nm passivated by 2-mercaptopropionic acid (Ag2S/2-MPA) in the presence of ethylene glycol.
The effects of trace metal impurities on Ga-68-radiolabelling with a tris(3-hydroxy-1,6-dimethylpyridin-4-one) (THP) chelator
Authors: Cusnir Ruslan , Cakebread Andrew , Cooper Margaret S. , Young Jennifer D. , Blower Philip J. , Ma Michelle T.
Published: November 2019

We have quantified trace metal impurities present in 68Ga generator eluant from the widely used Eckert & Ziegler 68Ga generator, and measured the effect of these metal impurities on 68Ga radiolabelling of a THP chelator.