bluuebunny/crossref_metadata_2025 huggingface dataset:
Silver Nanoparticles and Their Antibacterial Applications
Authors: Bruna Tamara , Maldonado-Bravo Francisca , Jara Paul , Caro Nelson
Published: July 2021

Silver nanoparticles (AgNPs) have been imposed as an excellent antimicrobial agent being able to combat bacteria in vitro and in vivo causing infections. The antibacterial capacity of AgNPs covers Gram-negative and Gram-positive bacteria, including multidrug resistant strains. AgNPs exhibit multiple and simultaneous mechanisms of action and in combination with antibacterial agents as organic compounds or antibiotics it has shown synergistic effect against pathogens bacteria such as Escherichia coli and Staphylococcus aureus. The characteristics of silver nanoparticles make them suitable for their application in medical and healthcare products where they may treat infections or prevent them efficiently. With the urgent need for new efficient antibacterial agents, this review aims to establish factors affecting antibacterial and cytotoxic effects of silver nanoparticles, as well as to expose the advantages of using AgNPs as new antibacterial agents in combination with antibiotic, which will reduce the dosage needed and prevent secondary effects associated to both.
Roles of MicroRNAs in Osteogenesis or Adipogenesis Differentiation of Bone Marrow Stromal Progenitor Cells
Authors: Zhang Ya-Li , Liu Liang , Peymanfar Yaser , Anderson Paul , Xian Cory J.
Published: July 2021

Bone marrow stromal cells (BMSCs) are multipotent cells which can differentiate into chondrocytes, osteoblasts, and fat cells. Under pathological stress, reduced bone formation in favour of fat formation in the bone marrow has been observed through a switch in the differentiation of BMSCs. The bone/fat switch causes bone growth defects and disordered bone metabolism in bone marrow, for which the mechanisms remain unclear, and treatments are lacking. Studies suggest that small non-coding RNAs (microRNAs) could participate in regulating BMSC differentiation by disrupting the post-transcription of target genes, leading to bone/fat formation changes. This review presents an emerging concept of microRNA regulation in the bone/fat formation switch in bone marrow, the evidence for which is assembled mainly from in vivo and in vitro human or animal models. Characterization of changes to microRNAs reveals novel networks that mediate signalling and factors in regulating bone/fat switch and homeostasis. Recent advances in our understanding of microRNAs in their control in BMSC differentiation have provided valuable insights into underlying mechanisms and may have significant potential in development of new therapeutics.
Can Transcranial Direct Current Stimulation Enhance Functionality in Older Adults? A Systematic Review
Authors: Pino-Esteban Andrés , Megía-García Álvaro , Martín-Caro Álvarez David , Beltran-Alacreu Hector , Avendaño-Coy Juan , Gómez-Soriano Julio , Serrano-Muñoz Diego
Published: July 2021

Transcranial direct current stimulation (tDCS) is a non-invasive, easy to administer, well-tolerated, and safe technique capable of affecting brain excitability, both at the cortical and cerebellum levels. However, its effectiveness has not been sufficiently assessed in all population segments or clinical applications. This systematic review aimed at compiling and summarizing the currently available scientific evidence about the effect of tDCS on functionality in older adults over 60 years of age. A search of databases was conducted to find randomized clinical trials that applied tDCS versus sham stimulation in the above-mentioned population. No limits were established in terms of date of publication. A total of 237 trials were found, of which 24 met the inclusion criteria. Finally, nine studies were analyzed, including 260 healthy subjects with average age between 61.0 and 85.8 years. Seven of the nine included studies reported superior improvements in functionality variables following the application of tDCS compared to sham stimulation. Anodal tDCS applied over the motor cortex may be an effective technique for improving balance and posture control in healthy older adults. However, further high-quality randomized controlled trials are required to determine the most effective protocols and to clarify potential benefits for older adults.
Role of Preoperative Esophagogastroduodenoscopy (EGD) in Bariatric Treatment
Authors: Sierżantowicz Regina , Ładny Jerzy R. , Kurek Krzysztof , Lewko Jolanta
Published: July 2021

Background: The recommendations for routine preoperative esophagogastroduodenoscopy (EGD) in patients qualified for bariatric surgeries are still a matter of debate. The aim of this study was to analyze the pathologies on preoperative EGD in patients qualified for bariatric surgeries. Materials and Methods: This study included 222 patients, divided into two groups. The obesity group consisted of patients with obesity (BMI ≥ 40 kg/m2), for whom EGD was a routine part of the preparation for laparoscopic sleeve gastrectomy (LSG). The control group of patients with normal body weight (BMI) qualified for EGD because of gastrointestinal ailments. Results: Regarding preoperative EGD in patients qualified for bariatric surgeries, we analyzed the prevalence of endoscopic pathologies in various gastrointestinal tract segments. Patients with obesity were shown to present with esophageal pathologies significantly more often than persons in the control group (n = 23, 20.91% vs. n = 12, 10.91%, p = 0.042). The odds ratio of esophageal pathologies in patients with obesity versus the control group equaled 2.15 (95%CI: 1.01–4.59). In turn, the odds ratio of duodenal pathologies in patients from the control group was 3.31 (95%Cl: 1.16–9.47), which means that persons from this group were approximately three times more likely to be diagnosed with those pathologies compared to obese patients. Moreover, patient sex was a significant predictor of duodenal pathologies, with an odds ratio of 4.03 (95%CI: 1.53–10.61). Conclusions: Preoperative EGD can identify a broad spectrum of pathologies in obese patients, which suggests a routine examination before bariatric surgery.
Prediction of Late-Onset Small for Gestational Age and Fetal Growth Restriction by Fetal Biometry at 35 Weeks and Impact of Ultrasound–Delivery Interval: Comparison of Six Fetal Growth Standards
Authors: Savirón-Cornudella Ricardo , Esteban Luis Mariano , Aznar-Gimeno Rocío , Dieste-Pérez Peña , Pérez-López Faustino R. , Campillos Jose Manuel , Castán-Larraz Berta , Sanz Gerardo , Tajada-Duaso Mauricio
Published: July 2021

Small-for-gestational-age (SGA) infants have been associated with increased risk of adverse perinatal outcomes (APOs). In this work, we assess the predictive ability of the ultrasound-estimated percentile weight (EPW) at 35 weeks of gestational age to predict late-onset SGA and APOs, according to six growth standards, and whether the ultrasound–delivery interval influences the detection rate. To this purpose, we analyze a retrospective cohort study of 9585 singleton pregnancies. EPWs at 35 weeks were calculated to the customized Miguel Servet University Hospital (MSUH) and Figueras standards and the non-customized MSUH, Fetal Medicine Foundation (FMF), INTERGROWTH-21st, and WHO standards. As results of our analysis, for a 10% false positive rate, the detection rates for SGA ranged between 48.9% with the customized Figueras standard (AUC 0.82) and 60.8% with the non-customized FMF standard (AUC 0.87). Detection rates to predict SGA by ultrasound–delivery interval (1–6 weeks) show higher detection rates as intervals decrease. APOs detection rates ranged from 27.0% with FMF to 7.9% with the Figueras standard. In conclusion, the ability of EPW to predict SGA at 35 weeks is good for all standards, and slightly better for non-customized standards. The APO detection rate is significantly greater for non-customized standards.
Biocompatibility Parameters with Standard and Increased Dose of Citrate in Hemodialysis—A Randomized Trial
Authors: Orsag Alesa , Bozic-Mijovski Mojca , Hudoklin Samo , Simcic Sasa , Gubensek Jakob
Published: July 2021

Background: The dose of citrate needed in regional citrate anticoagulation (RCA) to achieve optimal biocompatibility is unknown. We performed a randomized trial comparing two doses (ACTRN12613001340729). Methods: In 30 patients a single hemodialysis with either standard (2.7 mmol/L) or increased dose of citrate (4 mmol/L) was performed. C5a-desArg, myeloperoxidase (MPO), thrombin-antithrombin complex (TAT), and platelet factor 4 (PF4) were measured and the inner surface of the dialyzer fibers was evaluated with scanning electron microscopy (SEM). Results: A good separation of anticoagulation effect was achieved (post-filter ionized calcium 0.20 vs. 0.31 mmol/L, p < 0.05). There was no effect of citrate dose on any of the biocompatibility parameters; transient and parallel increase in PF4 after 30 min and parallel increase in TAT after 4 h were observed. There were no visually detected clotting problems within the circuit and no significant hypocalcemia in either group. SEM clotting score was excellent and comparable in both groups (p = 0.59). Conclusions: Given the excellent results in both groups, absence of between group differences and inability of the increased dose of citrate to completely blunt the small residual increase in PF4 and TAT, we conclude that the standard dose of citrate seems sufficient in RCA for chronic hemodialysis.
Comparison of the Effect of Oral Versus Intravenous Bisphosphonate Administration on Osteoclastogenesis in Advanced-Stage Medication-Related Osteonecrosis of the Jaw Patients
Authors: Kim Hye-Won , Lee Min-Woo , Lee Jung-Hwan , Kim Moon-Young
Published: July 2021

It is yet unknown whether the intravenous administration route alone can fully account for the exacerbation of medication-related osteonecrosis of the jaw (MRONJ). The purpose of this retrospective study was to identify the potential role of the bisphosphonate (BP) administration route as an independent prognostic factor for non-cancerous, stage III MRONJ patients. Bone samples were retrospectively obtained from two groups of osteoporosis patients who underwent surgery for the treatment of stage III MRONJ. Among the subjects, 10 had a history of only oral BP consumption and 10 of intravenous (IV) BP administration. The samples were assessed for osteoclast morphology and immunohistochemical expression of the receptor activator of NF-κB ligand (RANKL), osteoprotegerin (OPG), and potassium calcium-activated channel subfamily N member 4 (Kcnn4). Although the osteoclasts derived from both groups exhibited no significant differences in the mean quantity, diameter, and nuclearity, significantly attenuated tartrate-resistant acid phosphatase activity was noted among the IV BP-induced MRONJ bones compared to those of the oral BP group. Significant suppression of the RANKL/OPG ratio and Kcnn4 expression among the retrieved bones of IV BP group patients was also noted. Our results indicate the potential of the BP administration route as an independent prognostic factor for advanced-stage MRONJ, regardless of the dosage or indication for which the BP was prescribed.
Synthesis of MRGO Nanocomposites as a Potential Photocatalytic Demulsifier for Crude Oil-in-Water Emulsion
Authors: Lau Zhen Yin , Tan Ko Shyn , Khe Cheng Seong , Lai Chin Wei , You Kok Yeow , Tan Wai Kian
Published: July 2021

Oil-in-water (O/W) emulsion has been a major concern for the petroleum industry. A cost-effective magnetite-reduced graphene oxide (MRGO) nanocomposite was synthesized to study the demulsification process of emulsion using said nanocomposite under solar illumination. Characterization data show that the magnetite was successfully deposited on reduced graphene oxide through redox reaction at varying loading amounts of magnetite. Demulsification of the O/W emulsion using MRGO nanocomposite shows that in general the demulsification efficiency was dependent on the loading amount of Fe3O4 on the RGO sheet. It was proposed that the surfactant hydroxyl groups have an affinity towards Fe3O4, which the loading amount was directly proportionate to available active site in Fe3O4. As the loading amount increases, charge recombination centers on the RGO sheet would increase, effectively affecting the charge distribution within MRGO structure.
Prognostic Significance of JMJD3 Expression in Pleural Mesotheliomas
Authors: Rask-Nielsen Lauren , Prabhakaran Sarita , Hocking Ashleigh J. , Hussey Matthew , Klebe Sonja
Published: July 2021

Pleural mesothelioma is a disease associated with asbestos exposure and patients often have poor prognosis. Biomarkers that can stratify tumours more efficiently are much sought after to enable more personalized treatment options and predict prognosis. Jumonji domain-containing protein D3 (JMJD3) has variable expression in a range of tumours. However, there has been much discordance in the immunohistochemical labelling of JMJD3 between cancers at different sites and ambiguity exists regarding its functional significance. Recent evidence suggests that although nuclear expression of JMJD3 has a demethylase role in most cancers, there are also demethylase-independent actions of JMJD3 that need to be explored including its cytoplasmic expression. We analysed JMJD3 labelling in 99 pleural mesothelioma tissues and correlated nuclear and cytoplasmic expression with survival outcomes. We found that low nuclear and high cytoplasmic expression were associated with poor survival outcomes in our cohort (p = 0.014 and p = 0.041, respectively). Additionally, we found that low nuclear expression of JMJD3 was frequent in the sarcomatoid subtype (p < 0.001). Finally, we showed that cytoplasmic labelling is an independent prognostic marker of poor survival. Our cohort only contained a small number of tumours with high cytoplasmic expression of JMJD3, and a larger cohort study may provide clearer stratification.
Thixotropy of a Transparent Clay Manufactured Using Carbopol to Simulate Marine Soil
Authors: Sun Zhiwen , Kong Gangqiang , Zhou Yang , Shen Yang , Xiao Hanyu
Published: July 2021

A transparent clay manufactured using Carbopol® UltrezTM 10 (simplified as U10) was introduced, and its manufacturing processes were briefly described. Both relative transparency (RT) and modulation transfer function (MTF) methods were used to quantify the optical character variation via soil thickness. The transparency of this new transparent clay was analyzed and compared with four traditional transparent materials. The thixotropic properties of this synthetic transparent clay were measured in detail through the laboratory vane test. An exponential function was used to describe the thixotropy and sensitivity of the clay. The results showed that the new transparent clay has a relatively higher optical transparency than the majority of previous materials. Good-fitting results showed a similar development trend in thixotropy for the synthetic transparent clay and the natural ones. Furthermore, the sensitivity of the transparent clay was low to medium, which can simulate marine soil. With higher optical transparency than and similar thixotropy and sensitivity as natural clays, Carbopol® UltrezTM 10 shows great potential as a substitute for natural clay and is expected to be widely used in model tests.
General Counteraction Exerted by Sugars against Denaturants
Authors: Cozzolino Serena , Tortorella Attila , Del Vecchio Pompea , Graziano Giuseppe
Published: July 2021

The conformational stability of globular proteins is strongly influenced by the addition to water of different co-solutes. Some of the latter destabilize the native state, while others stabilize it. It is emerging that stabilizing agents are able to counteract the action of destabilizing agents. We have already provided experimental evidence that this counteraction is a general phenomenon and offered a rationalization. In the present work, we show that four different sugars, namely fructose, glucose, sucrose, and trehalose, counteract the effect of urea, tetramethylurea, sodium perchlorate, guanidinium chloride, and guanidinium thiocyanate despite the chemical and structural differences of those destabilizing agents. The rationalization we provide is as follows: (a) the solvent-excluded volume effect, a purely entropic effect, stabilizes the native state, whose solvent-accessible surface area is smaller than the one of denatured conformations; (b) the magnitude of the solvent-excluded volume effect increases markedly in ternary solutions because the experimental density of such solutions is larger than that of pure water.
2-Hydroxy-3-(4-oxy(2,2,6,6-tetramethylpiperidin-1-oxyl)butoxy)benzaldehyde
Authors: Vereshchagin Anatoliy A. , Novoselova Julia V. , Kalnin Arseniy Y. , Lukyanov Daniil A.
Published: July 2021

Salen-type complexes with transition metals and corresponding polymers attract great scientific interest due to their high electrochemical properties and potential for use as part of next generation organic energy storage devices. Because of their good conductivity but relatively low capacity, energy-intensive additives such as quinones or TEMPO fragments can significantly enhance the capacitive characteristics of the electrode materials. Herein, we report a preparation of precursor for a modified Salen-type complex, the substituted 2,3-Dihydroxybenzaldehyde by butoxy linkers with TEMPO fragment using alkylation reaction. The resulting product was characterized by the 1H and 13C, COSY, HMBC, HSQC nuclear magnetic resonance (NMR), ESI–high resolution mass spectrometry (ESI–HRMS), and Fourier-transform infrared spectroscopy (FTIR). The reported approach opens the way for easy modification of Salen-type complexes in order to increase their specific characteristics.
(2,3-Dihydro-1H-indol-5-ylmethyl)amine
Authors: Ogurtsov Vladimir A. , Rakitin Oleg A.
Published: July 2021

New (2,3-dihydro-1H-indol-5-ylmethyl)amine was synthesized from 2-((1-acetylindolin-5-yl)methyl)isoindoline-1,3-dione by simultaneous deprotection of phthalimide and acetyl groups. The structure of the newly synthesized compounds was established by elemental analysis, high resolution mass-spectrometry, 1H, 13C NMR and IR spectroscopy and mass-spectrometry. The resulting compound is a convenient intermediate for various disubstituted 1-(indolin-5-yl)methanamines, which may be of interest as substances with useful pharmacological properties.
Temporal Imaging of Live Cells by High-Speed Confocal Raman Microscopy
Authors: Kang Jeon Woong , Nguyen Freddy T. , Lue Niyom
Published: July 2021

Label-free live cell imaging was performed using a custom-built high-speed confocal Raman microscopy system. For various cell types, cell-intrinsic Raman bands were monitored. The high-resolution temporal Raman images clearly delineated the intracellular distribution of biologically important molecules such as protein, lipid, and DNA. Furthermore, optical phase delay measured using quantitative phase microscopy shows similarity with the image reconstructed from the protein Raman peak. This reported work demonstrates that Raman imaging is a powerful label-free technique for studying various biomedical problems in vitro with minimal sample preparation and external perturbation to the cellular system.
Effect of Cooling Method on Formability of Laser Cladding IN718 Alloy
Authors: Yang Jianyu , Li Xudong , Li Fei , Wang Wenxiao , Li Zhijie , Li Guanchao , Xie Hualong
Published: July 2021

The finite element model (FE) of temperature field of straight thin-walled samples in laser cladding IN718 was established, and the growth of microstructure was simulated by cellular automata (CA) method through macro-micro coupling (CA-FE). The effects of different cooling conditions on microstructure, hardness, and properties of laser-cladding layer were studied by designing cooling device. The results show that the simulation results are in good agreement with the microstructure of the cladding layer observed by the experiment. With the scanning strategy of reducing laser power layer-by-layer, the addition of water cooling device and the processing condition of 0.7 mm Z-axis lift, excellent thin-walled parts can be obtained. With the increase of cladding layers, the pool volume increases, the temperature value increases, the temperature gradient, cooling rate, solidification rate, K value gradually decrease, and eventually tend to be stable, in addition, the hardness shows a fluctuating downward trend. Under the processing conditions of layer-by-layer power reduction and water cooling device, the primary dendrite arm spacing reduced to about 8.3 μm, and the average hardness at the bottom of cladding layer increased from 260 HV to 288 HV. The yield strength and tensile strength of the tensile parts prepared under forced water cooling increased to a certain extent, while the elongation slightly decreased.
Titanium Functionalized with Polylysine Homopolymers: In Vitro Enhancement of Cells Growth
Authors: Contaldo Maria , De Rosa Alfredo , Nucci Ludovica , Ballini Andrea , Malacrinò Davide , La Noce Marcella , Inchingolo Francesco , Xhajanka Edit , Ferati Kenan , Bexheti-Ferati Arberesha , Feola Antonia , Di Domenico Marina
Published: July 2021

In oral implantology, the success and persistence of dental implants over time are guaranteed by the bone formation around the implant fixture and by the integrity of the peri-implant mucosa seal, which adheres to the abutment and becomes a barrier that hinders bacterial penetration and colonization close to the outer parts of the implant. Research is constantly engaged in looking for substances to coat the titanium surface that guarantees the formation and persistence of the peri-implant bone, as well as the integrity of the mucous perimeter surrounding the implant crown. The present study aimed to evaluate in vitro the effects of a titanium surface coated with polylysine homopolymers on the cell growth of dental pulp stem cells and keratinocytes to establish the potential clinical application. The results reported an increase in cell growth for both cellular types cultured with polylysine-coated titanium compared to cultures without titanium and those without coating. These preliminary data suggest the usefulness of polylysine coating not only for enhancing osteoinduction but also to speed the post-surgery mucosal healings, guarantee appropriate peri-implant epithelial seals, and protect the fixture against bacterial penetration, which is responsible for compromising the implant survival.
FAU-Type Zeolite Synthesis from Clays and Its Use for the Simultaneous Adsorption of Five Divalent Metals from Aqueous Solutions
Authors: Joseph Ifeoma V. , Tosheva Lubomira , Miller Gary , Doyle Aidan M.
Published: July 2021

In this research, a vermiculite-kaolinite clay (VK) was used to prepare faujasite zeolites via alkaline fusion and hydrothermal crystallisation. The optimal synthesis conditions were 1 h fusion with NaOH at 800 °C, addition of deionised water to the fused sample at a sample to deionised water mass ratio of 1:5, 68 h of non-agitated ageing of the suspension, and 24 h of hydrothermal treatment at 90 °C. The efficacy of the prepared faujasite was compared to raw clay and a reference zeolite material through adsorption experiments of aqueous solutions containing five divalent cations—Cd, Co, Cu, Pb, and Zn. The results showed that in the presence of competing cations at concentrations of 300 mg L−1 and adsorbent loading of 5 g L−1, within the first 10 min, about 99% of Pb, 60% of Cu, 58% of Cd, 28% of Zn, and 19% of Co were removed by the faujasite prepared from clay. Two to four parameter nonlinear adsorption isotherms were used to fit the adsorption data and it was found that overall, three and four parameter isotherms had the best fit for the adsorption process.
Interface Design in Lightweight SiC/TiSi2 Composites Fabricated by Reactive Infiltration Process: Interaction Phenomena between Liquid Si-Rich Si-Ti Alloys and Glassy Carbon
Authors: Giuranno Donatella , Gambaro Sofia , Bruzda Grzegorz , Nowak Rafal , Polkowski Wojciech , Sobczak Natalia , Delsante Simona , Novakovic Rada
Published: July 2021

To properly design and optimize liquid-assisted processes, such as reactive infiltration for fabricating lightweight and corrosion resistant SiC/TiSi2 composites, the extensive knowledge about the interfacial phenomena taking place when liquid Si-rich Si-Ti alloys are in contact with glassy carbon (GC) is of primary importance. To this end, the wettability of GC by two different Si-rich Si-Ti alloys was investigated for the first time by both the sessile and pendant drop methods at T = 1450 °C. The results obtained, in terms of contact angle values, spreading kinetics, reactivity, and developed interface microstructures, were compared with experimental observations previously obtained for the liquid Si-rich Si-Ti eutectics processed under the same operating conditions. As the main outcome, a different Si content did not seem to affect the final contact angle values. Contrarily, the final developed microstructure at the interface and the spreading kinetics were observed as weakly dependent on the composition. From a practical point of view, Si-Ti alloy compositions with a Si content falling in the simple eutectic region of the Si-Ti phase diagram might be potentially used as infiltrating materials of C- and SiC-based composites.
In Vitro Assessment of Long-Term Fluoride Ion Release from Nanofluorapatite
Authors: Herman Katarzyna , Wujczyk Marta , Dobrzynski Maciej , Diakowska Dorota , Wiglusz Katarzyna , Wiglusz Rafal J.
Published: July 2021

The issue concerning the tooth decay is ongoing, therefore the study of materials with potential use in its prevention is crucial. This study aimed to analyze the long-term release of fluoride from synthesized nanofluorapatite in various in vitro environments for its potential use in dental materials. We placed 100 mg samples in 0.9% NaCl or deionized water and incubated them at 37 °C or 22 °C for 12 weeks. F− levels were read at 1, 3, 24, 48, 72, and 96 h, and thereafter weekly. The levels of F− released at specific time intervals, as well as their cumulative values were compared. In a solution of 0.9% NaCl at 22 °C, there were no significant differences in the amount of F− released in the assessed time intervals, while at 37 °C, the highest value was read after 24 h (0.0697 ppm + 0.0006; p < 0.05). In deionized water, the highest amount of F− at 22 °C was read after 4 weeks (0.0776 ppm + 0.0028; p < 0.05), and at 37 °C, it was also the highest after 4 weeks (0.0910 ppm + 0.0156; p < 0.05). Under the same conditions, after 5 weeks the cumulative level of F− released (0.6216 ppm + 0.0085) significantly increased (p < 0.05), when compared to the samples placed in 0.9% NaCl at 37 °C and 22 °C (0.5493 ppm + 0.0321 and 0.5376 ppm + 0.0234, respectively). FAp releases F− for a long period of time in all assessed environments, therefore it is advised to continue testing in vivo models. Due to the probable remineralization effect towards hard tooth tissues, fluorapatite can be used in the prevention and treatment of dental caries and dentin hypersensitivity.
Graph Theory for Primary School Students with High Skills in Mathematics
Authors: Blanco Rocío , García-Moya Melody
Published: July 2021

Graph theory is a powerful representation and problem-solving tool, but it is not included in present curriculum at school levels. In this study we perform a didactic proposal based in graph theory, to provide students useful and motivational tools for problem solving. The participants, who were highly skilled in mathematics, worked on map coloring, Eulerian cycles, star polygons and other related topics. The program included six sessions in a workshop format and four creative sessions where participants invented their own mathematical challenges. Throughout the experience they applied a wide range of strategies to solve problems, such as look for a pattern, counting strategies or draw the associated graph, among others. In addition, they created as challenges the same type of problems posed in workshops. We conclude that graph theory successfully increases motivation of participants towards mathematics and allows the appearance and enforcement of problem-solving strategies.
A Cascade Deep Forest Model for Breast Cancer Subtype Classification Using Multi-Omics Data
Authors: El-Nabawy Ala’a , Belal Nahla A. , El-Bendary Nashwa
Published: July 2021

Automated diagnosis systems aim to reduce the cost of diagnosis while maintaining the same efficiency. Many methods have been used for breast cancer subtype classification. Some use single data source, while others integrate many data sources, the case that results in reduced computational performance as opposed to accuracy. Breast cancer data, especially biological data, is known for its imbalance, with lack of extensive amounts of histopathological images as biological data. Recent studies have shown that cascade Deep Forest ensemble model achieves a competitive classification accuracy compared with other alternatives, such as the general ensemble learning methods and the conventional deep neural networks (DNNs), especially for imbalanced training sets, through learning hyper-representations through using cascade ensemble decision trees. In this work, a cascade Deep Forest is employed to classify breast cancer subtypes, IntClust and Pam50, using multi-omics datasets and different configurations. The results obtained recorded an accuracy of 83.45% for 5 subtypes and 77.55% for 10 subtypes. The significance of this work is that it is shown that using gene expression data alone with the cascade Deep Forest classifier achieves comparable accuracy to other techniques with higher computational performance, where the time recorded is about 5 s for 10 subtypes, and 7 s for 5 subtypes.
Metabolomic Approaches to Studying the Response to Drought Stress in Corn (Zea mays) Cobs
Authors: Gaffney Isabella , Sallach Jonathan Brett , Wilson Julie , Bergström Edmund , Thomas-Oates Jane
Published: July 2021

Metabolomics is a technique that allows for the evaluation of the entire extractable chemical profile of a plant, for example, using high-resolution mass spectrometry (HRMS) and can be used to evaluate plant stress responses, such as those due to drought. Metabolomic analysis is dependent upon the efficiency of the extraction protocol. Currently, there are two common extraction procedures widely used in metabolomic experiments, those that extract from plant tissue processed in liquid nitrogen or extraction from lyophilised plant tissues. Here, we evaluated the two using non-targeted metabolomics to show that lyophilisation can stabilise the maize (Zea mays) extractable metabolome, increasing throughput and efficiency of extraction as compared to the more traditional processing in liquid nitrogen. Then, we applied the lyophilisation approach to explore the effect of drought upon the maize metabolome in a non-targeted HRMS metabolomics approach. Metabolomics revealed differences in the mature maize metabolome having undergone three drought conditions imposed at two critical development stages (three-leaf stage and grain-fill stage); moreover, this difference was observed across two tissue types (kernel and inner cob/pith). It was shown that under ideal conditions, the biochemical make-up of the tissue types is different. However, under stress conditions, the stress response dominates the metabolic profile. Drought-related metabolites known from other plant systems have been identified and metabolomics has revealed potential novel drought-stress indicators in our maize system.
Serum Metabolomic Analysis Suggests Impairment of Myocardial Energy Production in Takotsubo Syndrome
Authors: Nuñez-Gil Iván J. , Andrés Mireia , Benito Begoña , Bernardo Esther , Vedia Oscar , Ferreira-Gonzalez Ignacio , Barba Ignasi
Published: July 2021

Introduction: Takotsubo syndrome is a complex entity that, although it usually has a good prognosis, can be life threatening. While recent advances have improved the knowledge of takotsubo syndrome, many aspects of its etiology still remain uncertain. Metabolomics, a hypothesis generating approach, could provide novel pathophysiology information about this disease. Methods and Results: Serum samples were obtained from takotsubo (n = 19) and acute myocardial infarction patients (n = 8) at the cath lab and, in the case of takotsubo, again once the patient had recovered, 3 months after the main event. 1H NMR spectra of the serum were acquired at 9.4T using a CPMG pulse sequence (32 ms effective delay). Supervised and unsupervised pattern recognition approaches where applied to the data. Pattern recognition was able to differentiate between takotsubo and acute myocardial infarction during the acute phase with 95% accuracy. Myocardial infarction patients showed an increase in lipid signals, a known risk factor for the disease while takotsubo patients showed a relative increase in acetate that could suggest a reduced turnover of the Krebs cycle. When comparing acute and recovered phases, we could detect an increase in alanine and creatine once patients recovered. Conclusions: Our results demonstrate that takotsubo syndrome is metabolically different than AMI, showing limited myocardial energy production capacity during the acute phase. We achieved high classification success against AMI; however, this study should be considered as a proof of concept regarding clinical application of metabolic profiling in takotsubo cardiomyopathy.
Design and Experiment Using Flexible Bumps for Piezoelectric-Driven Hydraulically Amplified Braille Dot Display
Authors: Tian Xiaochao , Sun Yuze , Li Zhiyao , Wang Hu , Wang Zhicong , Wang Haigang , Zhu Jinzhi , Yang Zhigang
Published: July 2021

This paper describes the design of a piezoelectric-driven hydraulically amplified Braille-flexible bump device that enables the flexible formation of Braille characters. A piezoelectric vibrator is used to excite fluid resonance in a cavity, and displacement is realized by compressing the fluid, allowing Braille character dots to be formed. First, the structural design and working principle of the device, as well as the method used to drive the fluid, are explained. Expressions for the output displacement and amplification ratio of the flexible film and piezoelectric vibrator are then obtained through kinetic analysis of the system unit. Subsequently, the structural parameters that affect the output displacement and the liquid amplification are described. Finally, experimental tests of the system are explained. The results indicate that the output displacement of the contact formed by the flexible film reaches 0.214 mm, satisfying the requirements of the touch sensitivity standard for the blind, when the fluid cavity diameter measures 31 mm and the resonance frequency is 375.4 Hz. The corresponding water discharge is 8.8 mL. This study proves that constructing a Braille bump device in this way is both feasible and effective.
Magnetic Aspects and Large Exchange Bias of Ni0.9Co0.1/NiCoO Multilayers
Authors: Anyfantis Dimitrios I. , Kanistras Nikos , Ballani Camillo , Barnasas Alexandros , Kapaklis Vassilios , Schmidt Georg , Papaioannou Evangelos Th. , Poulopoulos Panagiotis
Published: July 2021

Ultrathin films of Ni0.9Co0.1 were grown by radio frequency magnetron sputtering. By means of a periodic natural oxidation procedure they were transformed into Ni0.9Co0.1/NiCoO multilayers. Room temperature hysteresis loops recorded via the magneto-optic Kerr effect have revealed over all in-plane magnetic anisotropy due to magnetostatic anisotropy. Mild thermal annealing at 250 °C enhanced a tendency for perpendicular magnetic anisotropy, mainly due to an increase of the uniaxial volume anisotropy term. Spin reorientation transition, exchange bias larger than 700 Oe, and strong coercivity enhancement were observed via a superconducting quantum interference device at low temperatures after field cooling.
Effects of Aspergillus fumigatus Conidia on Apoptosis and Proliferation in an In Vitro Model of the Lung Microenvironment
Authors: Kushima Hisako , Tsunoda Toshiyuki , Matsumoto Taichi , Kinoshita Yoshiaki , Izumikawa Koichi , Shirasawa Senji , Fujita Masaki , Ishii Hiroshi
Published: July 2021

Background/Aim: Aspergillus is often detected in respiratory samples from patients with chronic respiratory diseases, including pulmonary fibrosis, suggesting that it can easily colonize the airways. To determine the role of Aspergillus colonization in pulmonary fibrosis, we cultured human lung epithelial A549 cells or murine embryo fibroblast NIH/3T3 cells with Aspergillus conidia in 3D floating culture representing the microenvironment. Materials and Methods: Cells were cultured in two-dimensional (2D) and three-dimensional floating (3DF) culture with heat-inactivated Aspergillus fumigatus (AF) 293 conidia at an effector-to-target cell ratio of 1:10 (early-phase model) and 1:100 (colonization model), and RNA-sequencing and Western blots (WB) were performed. Results: AF293 conidia reduced A549 cell growth in 2D and 3DF cultures and induced apoptosis in A549 spheroids in 3DF culture. RNA-sequencing revealed the increased expression of genes associated with interferon-mediated antiviral responses including MX dymamin-like GTPase 1 (MX1). Interestingly, the decreased expression of genes associated with the cell cycle was observed with a high concentration of AF293 conidia. WB revealed that epithelial-mesenchymal transition was not involved. Notably, AF293 conidia increased NIH/3T3 growth only in 3DF culture without inducing an apoptotic reaction. RNA-sequencing revealed the increased expression of genes associated with interferon signalling, including MX2; however, the decreased expression of genes associated with the cell cycle was not observed. Conclusions: AF affects both apoptosis of epithelial cells and the growth of fibroblasts. A deeper understanding of the detailed mechanisms underlying Aspergillus-mediated signaling pathway in epithelial cells and fibroblasts will help us to understand the lung microenvironment.
Utilization of Monosaccharides by Hungateiclostridium thermocellum ATCC 27405 through Adaptive Evolution
Authors: Ha-Tran Dung Minh , Nguyen Trinh Thi My , Lo Shou-Chen , Huang Chieh-Chen
Published: July 2021

Hungateiclostridium thermocellum ATCC 27405 is a promising bacterium for consolidated bioprocessing with a robust ability to degrade lignocellulosic biomass through a multienzyme cellulosomal complex. The bacterium uses the released cellodextrins, glucose polymers of different lengths, as its primary carbon source and energy. In contrast, the bacterium exhibits poor growth on monosaccharides such as fructose and glucose. This phenomenon raises many important questions concerning its glycolytic pathways and sugar transport systems. Until now, the detailed mechanisms of H. thermocellum adaptation to growth on hexose sugars have been relatively poorly explored. In this study, adaptive laboratory evolution was applied to train the bacterium in hexose sugars-based media, and genome resequencing was used to detect the genes that got mutated during adaptation period. RNA-seq data of the first culture growing on either fructose or glucose revealed that several glycolytic genes in the Embden–Mayerhof–Parnas pathway were expressed at lower levels in these cells than in cellobiose-grown cells. After seven consecutive transfer events on fructose and glucose (~42 generations for fructose-adapted cells and ~40 generations for glucose-adapted cells), several genes in the EMP glycolysis of the evolved strains increased the levels of mRNA expression, accompanied by a faster growth, a greater biomass yield, a higher ethanol titer than those in their parent strains. Genomic screening also revealed several mutation events in the genomes of the evolved strains, especially in those responsible for sugar transport and central carbon metabolism. Consequently, these genes could be applied as potential targets for further metabolic engineering to improve this bacterium for bio-industrial usage.
Feasibility of Recycling Bayer Process Red Mud for the Safety Backfill Mining of Layered Soft Bauxite under Coal Seams
Authors: Li Shuai , Zhang Rui , Feng Ru , Hu Boyi , Wang Guojun , Yu Haoxuan
Published: July 2021

The mining of layered soft bauxite under coal seams (BCS) will cause serious underground goaf disasters and surface Bayer process red mud (BRM) pollution. In order to realize the safe and efficient mining of BCS, the feasibility of recycling BRM as a backfilling aggregate was explored. A series of tests were conducted to prevent the pollution diversion of BRM from surface storage to underground goafs, and a numerical simulation analysis of the backfilling mining process was carried out based on FLAC3D to protect the overlying coal seam. The results show that: under the action of encapsulation, solidification and inhibiting precipitation from cementitious materials, the leaching concentration of harmful substances in red mud-based cemented backfill (RCB) can be reduced 70% more than fresh BRM. Mining disturbance redistributes the in-situ stress field of overlying strata; normal backfilling can not only reduce the pressure stress of pillars, but also release the tensile stress in the roof and floor from +0.4956 MPa to −0.1992 MPa, effectively preventing roof subsidence. Since the creep damage process of past backfill will absorb and dissipate lots of energy, the disturbance range caused by backfill mining is controlled within 3 m, which is only 10% of the open-stope method.
Effect of pH Cycling and Zinc Ions on Calcium and Magnesium Carbonate Formation in Saline Fluids at Low Temperature
Authors: Vandeginste Veerle
Published: July 2021

The formation of dolomite is very challenging in the laboratory under ambient conditions due to kinetic inhibition. The goal of this study was to test the impact of pH cycling and zinc ions on the formation of magnesium-rich carbonates in saline fluids at a low temperature. Batch reactor experiments were conducted in two series of pH cycling experiments, one without and one with zinc ions, at 43 °C. The results after 36 diel pH cycles indicate a reaction product assemblage of hydromagnesite, aragonite and magnesite in the experiments without zinc ions, and of magnesite and minor aragonite in the experiments with zinc ions. The presence of zinc ions leads to a decrease in the pH in the acid phase of the cycling experiments, which likely plays a role in the reaction product assemblage. Moreover, the hydration enthalpy and other specific ion effects could be additional factors in the formation of magnesium-rich carbonate. The results show a clear evolution towards increasing incorporation of magnesium in the carbonate phase with cycle number, especially in the experiments with zinc ions, reflecting a ripening process that is enhanced by pH cycling. Hence, repeated pH cycling did not lead to more ordered dolomite (from protodolomite), but rather to the formation of magnesite with 92 mol% MgCO3 after 36 cycles, even though geochemical models indicate a higher saturation index for dolomite than for magnesite.
Towards a Design Space of Haptics in Everyday Virtual Reality across Different Spatial Scales
Authors: Li Jingyi , Mayer Alexandra , Butz Andreas
Published: July 2021

Virtual Reality (VR) has become a consumer-grade technology, especially with the advent of standalone headsets working independently from a powerful computer. Domestic VR mainly uses the visual and auditory senses since VR headsets make this accessible. Haptic feedback, however, has the potential to increase immersion substantially. So far, it is mostly used in laboratory settings with specialized haptic devices. Especially for domestic VR, there is underexplored potential in exploiting physical elements of the often confined space in which it is used. In a literature review (n = 20), we analyzed VR interaction using haptic feedback with or without physical limitations. From this, we derive a design space for VR haptics across three spatial scales (seated, standing, and walking). In our narrow selection of papers, we found inspirations for future work and will discuss two example scenarios. Our work gives a current overview of haptic VR solutions and highlights strategies for adapting laboratory solutions to an everyday context.
Endoplasmic Reticulum Stress and Autophagy Markers in Soleus Muscle Disuse-Induced Atrophy of Rats Treated with Fish Oil
Authors: Marzuca-Nassr Gabriel Nasri , Kuwabara Wilson Mitsuo Tatagiba , Vitzel Kaio Fernando , Murata Gilson Masahiro , Torres Rosângela Pavan , Mancini-Filho Jorge , Alba-Loureiro Tatiana Carolina , Curi Rui
Published: July 2021

Endoplasmic reticulum stress (ERS) and autophagy pathways are implicated in disuse muscle atrophy. The effects of high eicosapentaenoic (EPA) or high docosahexaenoic (DHA) fish oils on soleus muscle ERS and autophagy markers were investigated in a rat hindlimb suspension (HS) atrophy model. Adult Wistar male rats received daily by gavage supplementation (0.3 mL per 100 g b.w.) of mineral oil or high EPA or high DHA fish oils (FOs) for two weeks. Afterward, the rats were subjected to HS and the respective treatments concomitantly for an additional two-week period. After four weeks, we evaluated ERS and autophagy markers in the soleus muscle. Results were analyzed using two-way analysis of variance (ANOVA) and Bonferroni post hoc test. Gastrocnemius muscle ω-6/ω-3 fatty acids (FAs) ratio was decreased by both FOs indicating the tissue incorporation of omega-3 fatty acids. HS altered (p < 0.05) the protein content (decreasing total p38 and BiP and increasing p-JNK2/total JNK2 ratio, and caspase 3) and gene expressions (decreasing BiP and increasing IRE1 and PERK) of ERS and autophagy (decreasing Beclin and increasing LC3 and ATG14) markers in soleus. Both FOs attenuated (p < 0.05) the increase in PERK and ATG14 expressions induced by HS. Thus, both FOs could potentially attenuate ERS and autophagy in skeletal muscles undergoing atrophy.