bluuebunny/crossref_metadata_2025 huggingface dataset:
Relationship between elevated impulsivity and cognitive declines in elderly community-dwelling individuals
Authors: Sakurai Keisuke , Li Haowei , Inamura Noriko , Masuoka Nobutaka , Hisatsune Tatsuhiro
Published: December 2020

Impulse control disorders are recognized as one of the behavioral and psychological symptoms of dementia (BPSD). Majority of studies on the treatment of BPSD related to impulsivity have rather focused on the aggression and agitation. In particular, it has not been investigated how cognitive declines are associated with impulsivity in community-dwelling elderly people. Here, we have measured the cognitive and memory functions and impulsivity of 212 elderly community-dwelling people using a psychometric test battery and analyzed the correlation between their level of impulsivity and cognitive functions by multiple regression analysis. We found an elevation of impulsivity, which was evaluated by the Barratt Impulsiveness Scale-11, closely related to decline of cognitive functions, which were evaluated by the Montreal Cognitive Assessment and the Mini-Mental State Examination, and Logical Memory function, which were evaluated by the Wechsler Memory Scale-Delayed Recall. Then we have divided them into groups based on the severity of cognitive decline and conducted an analysis of each group, the result of which showed that as this tendency was particularly noticeable in the suspected dementia group. Therefore, we have concluded that heightened impulsivity is negatively associated with cognitive and memory functions in community-dwelling elderly people.
Single nucleotide vitamin D receptor polymorphisms (FokI, BsmI, ApaI, and TaqI) in the pathogenesis of prematurity complications
Authors: Kosik Katarzyna , Szpecht Dawid , Al-Saad Salwan R. , Karbowski Lukasz M. , Kurzawińska Grażyna , Szymankiewicz Marta , Drews Krzysztof , Wolski Hubert , Seremak-Mrozikiewicz Agnieszka
Published: December 2020

The vitamin D receptor (VDR), coded by the VDR gene, plays a pivotal role in executing cellular functions when bound by the active form of vitamin D. Gene polymorphisms in this receptor have been increasingly associated with a heightened state of vulnerability to certain diseases. However, limited data is available concerning the role of VDR gene polymorphisms in preterm infant complications. In 114 premature infants (< 32 weeks gestation) we analyze four single nucleotide VDR polymorphisms (rs2228570 (FokI), rs1544410 (BsmI), rs797532 (ApaI), rs731236 (TaqI)) for their association with respiratory distress syndrome (RDS), intraventricular hemorrhage (IVH), bronchopulmonary dysplasia (BPD), necrotizing enterocolitis (NEC) and retinopathy of prematurity (ROP). The results show that BPD was almost four times more likely in infants with the genotype CC of ApaI (rs7975232) (OR 3.845; p = 0.038). While both BPD and NEC were 2.1 times more likely to occur in preterm infants with the allele C of ApaI (rs7975232) (respectively: OR 2.111 and OR 2.129, p < 0.05). The ApaI VDR polymorphism appears to influence incidence of BPD and NEC in preterm infants. Considering VDR polymorphisms in future genetic investigations, in preterm complications, may prove clinically relevant.
Local environment effects on charged mutations for developing aggregation-resistant monoclonal antibodies
Authors: Lee Jihyeon , Chong Song-Ho , Ham Sihyun
Published: December 2020

Protein aggregation is a major concern in biotherapeutic applications of monoclonal antibodies. Introducing charged mutations is among the promising strategies to improve aggregation resistance. However, the impact of such mutations on solubilizing activity depends largely on the inserting location, whose mechanism is still not well understood. Here, we address this issue from a solvation viewpoint, and this is done by analyzing how the change in solvation free energy upon charged mutation is composed of individual contributions from constituent residues. To this end, we perform molecular dynamics simulations for a number of antibody mutants and carry out the residue-wise decomposition of the solvation free energy. We find that, in addition to the previously identified “global” principle emphasizing the key role played by the protein total net charge, a local net charge within $$\sim$$
∼
15 Å from the mutation site exerts significant effects. For example, when the net charge of an antibody is positive, the global principle states that introducing a positively charged mutation will lead to more favorable solvation. Our finding further adds that an even more optimal mutation can be done at the site around which more positively charged residues and fewer negatively charged residues are present. Such a “local” design principle accounts for the location dependence of charged mutations, and will be useful in producing aggregation-resistant antibodies.
Histologic features suggesting connective tissue disease in idiopathic pulmonary fibrosis
Authors: Kim Ho Cheol , Song Joon Seon , Park Sojung , Yoon Hee-Young , Lim So Yun , Chae Eun Jin , Jang Se Jin , Song Jin Woo
Published: December 2020

Some patients with idiopathic pulmonary fibrosis (IPF) have histopathologic features suggesting connective tissue disease (CTD); however, their clinical course and prognosis remain unclear. Thus, we aimed to investigate the clinical course and prognosis of these patients with histologic autoimmune features. Among 114 patients with biopsy-proven IPF, the histologic features were semi-quantitatively graded, and CTD scores (range: 0–9) were calculated as the sum of each score of plasma cell infiltration, lymphoid aggregates, and germinal centres. Patients with high CTD scores (≥ 4) were classified into the interstitial pneumonia with histologic autoimmune features (IP-hAF) group. The mean age of the patients was 60.0 years; 74.6% were men, 69.3% were ever-smokers, and 35.1% had IP-hAF. During follow-up, the IP-hAF group showed slower decline in lung function, and better prognosis (median survival, 48.7 vs. 40.4 months; p = 0.015) than the no-IP-hAF group. On multivariate Cox analysis, IP-hAF was an independent prognostic factor (hazard ratio, 0.522; p = 0.016), along with the lower diffusing capacity for carbon monoxide, higher scores of reticulation and honeycombing, and usual interstitial pneumonia pattern on high-resolution computed tomography. Patients with IPF having histologic autoimmune features show distinct clinical characteristics and better outcome than those without histologic autoimmune features.
Historical biogeography of Acer L. (Sapindaceae): genetic evidence for Out-of-Asia hypothesis with multiple dispersals to North America and Europe
Authors: Gao Jian , Liao Pei-Chun , Huang Bing-Hong , Yu Tao , Zhang Yu-Yang , Li Jun-Qing
Published: December 2020

Biogeography is the study of where, when, and how modern species evolved and diversified. Acer L. (maple) is one of the most diverse and widespread genera in the Northern Hemisphere. It comprises 124–156 species in the world, approximately 80% species of Acer are native in Asia. The current diversity center of Acer is not congruent with the distribution of the oldest fossils of the genus. Therefore, we herein used 84 species and subspecies to reconstruct the phylogeny and investigate the biogeographic history of Acer using nuclear ITS and three cpDNA fragments (psbA-trnH spacer, rpl16 intron, and trnL-trnF spacer) with maximum likelihood, maximum parsimony, and Bayesian inference methods. The analyses showed that the current diversity center and the origin center of Acer is Asia. Additionally, the North American and Euro-Mediterranean species originated from multiple sources from Asia via the North Atlantic Land Bridge and the Bering Land Bridge, and intercontinental migration has mainly occurred since the Miocene. This study not only provides a novel insight of the origin and dispersal routes of Acer but also exemplifies how past climatic changes affect the diversification-rates of Northern Hemisphere forest trees.
Age-dependent changes in visual sensitivity induced by moving fixation points in adduction and abduction using imo perimetry
Authors: Shoji Takuhei , Mine Izumi , Kumagai Tomoyuki , Kosaka Akane , Yoshikawa Yuji , Shinoda Kei
Published: December 2020

Visual field (VF) testing has usually been performed with the central gaze as a fixed point. Recent publications indicated optic nerve head deformations induced by optic nerve traction force can promote the progression of optic neuropathies, including glaucoma. We generated a new static test protocol that adds 6° adduction and abduction to gaze position (fixation points) movement. The aim of this study was to investigate both whether quantifying VF sensitivities at lateral horizontal gaze positions is feasible and whether horizontal gaze positions change sensitivities differently in subjects of different ages. Healthy adult eyes from 29 younger (≤ 45 years) and 28 elderly (> 45 years) eyes were examined in this cross-sectional study. After VF testing with central gaze as a fixation point using 24 plus (1) imo static perimetry, subjects underwent VF testing with 6° adduction and 6° abduction as fixation points. The average mean sensitivities with central gaze, adduction, and abduction were 29.9 ± 1.0, 29.9 ± 1.3, and 30.0 ± 1.2 decibels (dB) in younger subjects and 27.7 ± 1.2, 27.5 ± 1.7, and 28.1 ± 1.3 dB in elderly subjects, respectively. Visual sensitivity in young healthy subjects was similar among the three fixation points, whereas visual sensitivity in elderly healthy subjects was significantly better with abduction as a fixation point than with central gaze and adduction (both p < 0.05). We expect this test protocol to contribute to our understanding of visual function during horizontal eye gaze movement in various eye diseases.
Structural analysis and insight into effector binding of the niacin-responsive repressor NiaR from Bacillus halodurans
Authors: Lee Dong Won , Park Young Woo , Lee Myung Yeon , Jeong Kang Hwa , Lee Jae Young
Published: December 2020

The niacin-responsive repressor, NiaR, is transcriptional repressor of certain nicotinamide adenine dinucleotide (NAD) biosynthetic genes in response to an increase in niacin levels. NAD is a vital molecule involved in various cellular redox reactions as an electron donor or electron acceptor. The NiaR family is conserved broadly in the Bacillus/Clostridium group, as well as in the Fusobacteria and Thermotogales lineages. The NiaR structure consists of two domains: an N-terminal DNA-binding domain, and a C-terminal regulation domain containing a metal-binding site. In this paper, we report the crystal structures of apo and niacin-bound forms of NiaR from Bacillus halodurans (BhNiaR). The analysis of metal-binding and niacin-binding sites through the apo and niacin-bound structures is described. Each N- and C-terminal domain structure of BhNiaR is almost identical with NiaR from Thermotoga maritima, but the overall domain arrangement is quite different. A zinc ion is fully occupied in each subunit with well-conserved residues in the C-terminal domain. Niacin is also located at a hydrophobic pocket near the zinc ion in the C-terminal domain.
Classification of invasive bloodstream infections and Plasmodium falciparum malaria using autoantibodies as biomarkers
Authors: Krumkamp Ralf , Struck Nicole Sunaina , Lorenz Eva , Zimmermann Marlow , Boahen Kennedy Gyau , Sarpong Nimako , Owusu-Dabo Ellis , Pak Gi Deok , Jeon Hyon Jin , Marks Florian , Jacobs Thomas , May Jürgen , Eibach Daniel
Published: December 2020

A better understanding of disease-specific biomarker profiles during acute infections could guide the development of innovative diagnostic methods to differentiate between malaria and alternative causes of fever. We investigated autoantibody (AAb) profiles in febrile children (≤ 5 years) admitted to a hospital in rural Ghana. Serum samples from 30 children with a bacterial bloodstream infection and 35 children with Plasmodium falciparum malaria were analyzed using protein microarrays (Protoplex Immune Response Assay, ThermoFisher). A variable selection algorithm was applied to identify the smallest set of AAbs showing the best performance to classify malaria and bacteremia patients. The selection procedure identified 8 AAbs of which IFNGR2 and FBXW5 were selected in repeated model run. The classification error was 22%, which was mainly due to non-Typhi Salmonella (NTS) diagnoses being misclassified as malaria. Likewise, a cluster analysis grouped patients with NTS and malaria together, but separated malaria from non-NTS infections. Both current and recent malaria are a risk factor for NTS, therefore, a better understanding about the function of AAb in disease-specific immune responses is required in order to support their application for diagnostic purposes.
Solid-state NMR investigation of the involvement of the P2 region in tau amyloid fibrils
Authors: Savastano Adriana , Jaipuria Garima , Andreas Loren , Mandelkow Eckhard , Zweckstetter Markus
Published: December 2020

The aggregation of hyperphosphorylated tau into amyloid fibrils is closely linked to the progression of Alzheimer’s disease. To gain insight into the link between amyloid structure and disease, the three-dimensional structure of tau fibrils has been studied using solid-state NMR (ssNMR) and cryogenic electron microscopy (cryo-EM). The proline-rich region of tau remains poorly defined in the context of tau amyloid structures, despite the clustering of several phosphorylation sites, which have been associated with Alzheimer’s disease. In order to gain insight into the contribution of the proline-rich region P2 of tau to amyloid fibrils, we studied in vitro aggregated amyloid fibrils of tau constructs, which contain both the proline-rich region P2 and the pseudo-repeats. Using ssNMR we show that the sequence $$^{225}{\text {KVAVVRT}}^{231}$$

225

KVAVVRT

231

, the most hydrophobic patch within the P2 region, loses its flexibility upon formation of amyloid fibrils. The data suggest a contribution of the P2 region to tau amyloid fibril formation, which might account for some of the unassigned electron density in cryo-EM studies of tau fibrils and could be modulated by tau phosphorylation at the disease-associated AT180 epitope T231/S235.
Single infection with Batrachochytrium dendrobatidis or Ranavirus does not increase probability of co-infection in a montane community of amphibians
Authors: Bosch Jaime , Monsalve-Carcaño Camino , Price Stephen J. , Bielby Jon
Published: December 2020

Understanding the occurrence and consequence of co-infections can be useful in designing disease management interventions. Amphibians are the most highly threatened vertebrates, and emerging pathogens are a serious threat to their conservation. The amphibian chytrid fungus and the viruses of the Ranavirus genus are already widely distributed, causing disease outbreaks and population declines worldwide. However, we lack information about the occurrence and consequences of coinfection with these pathogens across age-classes of amphibian hosts. Here, we analyze the occurrence of infection of the amphibian chytrid fungus and ranaviruses during one season in two susceptible amphibian species at two different locations at which outbreaks have occurred. We found that the co-occurrence of both pathogens in a particular host is not common except in highly susceptible life-stages, and that single infections are the most common situation. Moreover, we found that the occurrence of one pathogen in a particular host did not predict the occurrence of the other. We attribute these results to the niches in which both pathogens proliferate in amphibian hosts.
Excited state dynamics and exciton diffusion in triphenylamine/dicyanovinyl push–pull small molecule for organic optoelectronics
Authors: Raul Benedito A. L. , Luponosov Yuriy N. , Yang Wenyan , Surin Nikolay M. , Douhéret Olivier , Min Jie , Jansen Thomas L. C. , Ponomarenko Sergei A. , Pshenichnikov Maxim S.
Published: December 2020

Triphenylamine-based small push–pull molecules have recently attracted substantial research attention due to their unique optoelectronic properties. Here, we investigate the excited state de-excitation dynamics and exciton diffusion in TPA-T-DCV-Ph-F small molecule, having simple chemical structure with asymmetrical architecture and end-capped with electron-withdrawing p-fluorodicyanovinyl group. The excited state lifetime in diluted solutions (0.04 ns in toluene and 0.4 ns in chloroform) are found to be surprisingly shorter compared to the solid state (3 ns in PMMA matrix). Time-dependent density functional theory indicates that this behavior originates from non-radiative relaxation of the excited state through a conical intersection between the ground and singlet excited state potential energy surfaces. Exciton diffusion length of ~ 16 nm in solution processed films was retrieved by employing time-resolved photoluminescence volume quenching measurements with Monte Carlo simulations. As means of investigating the device performance of TPA-T-DCV-Ph-F, we manufactured solution and vacuum processed bulk heterojunction solar cells that yielded efficiencies of ~ 1.5% and ~ 3.7%, respectively. Our findings demonstrate that the short lifetime in solutions does not hinder per se long exciton diffusion length in films thereby granting applications of TPA-T-DCV-Ph-F and similar push–pull molecules in vacuum and solution processable devices.
Cortical plasticity elicited by acoustically cued monetary losses: an ERP study
Authors: Gorin Aleksei , Krugliakova Elena , Nikulin Vadim , Kuznetsova Aleksandra , Moiseeva Victoria , Klucharev Vasily , Shestakova Anna
Published: December 2020

Both human and animal studies have demonstrated remarkable findings of experience-induced plasticity in the cortex. Here, we investigated whether the widely used monetary incentive delay (MID) task changes the neural processing of incentive cues that code expected monetary outcomes. We used a novel auditory version of the MID task, where participants responded to acoustic cues that coded expected monetary losses. To investigate task-induced brain plasticity, we presented incentive cues as deviants during passive oddball tasks before and after two sessions of the MID task. During the oddball task, we recorded the mismatch-related negativity (MMN) as an index of cortical plasticity. We found that two sessions of the MID task evoked a significant enhancement of MMN for incentive cues that predicted large monetary losses, specifically when monetary cue discrimination was essential for maximising monetary outcomes. The task-induced plasticity correlated with the learning-related neural activity recorded during the MID task. Thus, our results confirm that the processing of (loss)incentive auditory cues is dynamically modulated by previously learned monetary outcomes.
Accumulation of antinuclear associated antibodies in circulating immune complexes is more prominent in SLE patients from Sudan than Sweden
Authors: Elbagir Sahwa , Sohrabian Azita , Elshafie Amir I. , Elagib Elnour M. , Mohammed Nasr Eldeen A. , Nur Musa A. M. , Svenungsson Elisabet , Gunnarsson Iva , Rönnelid Johan
Published: December 2020

The role of anti-nuclear autoantibody (ANA) specificities in immune complexes (IC) formation has been studied to a limited extent in SLE, and not at all in African SLE patients. We compared ANA in IC from Sudanese and Swedish SLE patients. We included 93 Sudanese and 332 Swedish SLE patients fulfilling the 1982 ACR criteria. IC were captured using C1q-coated beads. ANA specificities were quantified in sera and IC. Results were related to modified SLEDAI. Whereas serum levels of anti-Sm, anti-dsDNA and anti-ribosomal P were higher in Swedish patients, IC levels of most ANA specificities were higher among Sudanese patients. This difference was especially prominent for anti-chromatin antibodies, which remained after adjustment for age, disease duration and treatment. Total levels of C1q-binding IC correlated with levels of specific ANA in IC, with highest correlations for anti-chromatin antibodies among Sudanese patients. Whereas occurrence of anti- SSA/Ro60, anti-histone and anti-U1RNP in both serum and IC associated with high SLEDAI score, anti-dsDNA in IC but not in serum associated with high SLEDAI. ANA, especially antibodies targeting chromatin, accumulate more in IC from Sudanese SLE patients. If the autoantibody fraction forming IC is pathogenically important, this might explain the generally described severe SLE in black populations.
Fingerprinting molecular and isotopic biosignatures on different hydrothermal scenarios of Iceland, an acidic and sulfur-rich Mars analog
Authors: Sánchez-García Laura , Carrizo Daniel , Molina Antonio , Muñoz-Iglesias Victoria , Lezcano María Ángeles , Fernández-Sampedro Maite , Parro Victor , Prieto-Ballesteros Olga
Published: December 2020

Detecting signs of potential extant/extinct life on Mars is challenging because the presence of organics on that planet is expected to be very low and most likely linked to radiation-protected refugia and/or preservative strategies (e.g., organo-mineral complexes). With scarcity of organics, accounting for biomineralization and potential relationships between biomarkers, mineralogy, and geochemistry is key in the search for extraterrestrial life. Here we explored microbial fingerprints and their associated mineralogy in Icelandic hydrothermal systems analog to Mars (i.e., high sulfur content, or amorphous silica), to identify potentially habitable locations on that planet. The mineralogical assemblage of four hydrothermal substrates (hot springs biofilms, mud pots, and steaming and inactive fumaroles) was analyzed concerning the distribution of biomarkers. Molecular and isotopic composition of lipids revealed quantitative and compositional differences apparently impacted by surface geothermal alteration and environmental factors. pH and water showed an influence (i.e., greatest biomass in circumneutral settings with highest supply and turnover of water), whereas temperature conditioned the mineralogy that supported specific microbial metabolisms related with sulfur. Raman spectra suggested the possible coexistence of abiotic and biomediated sources of minerals (i.e., sulfur or hematite). These findings may help to interpret future Raman or GC–MS signals in forthcoming Martian missions.
Smoking load reduction is insufficient to downregulate miR-301b, a lung cancer promoter
Authors: dos Santos Arcas Camila , Lin-Wang Hui Tzu , Umeda Iracema Ioco Kikuchi , de Sousa Márcio Gonçalves , Utiyama Daniela Mitiyo Odagiri , de Padua Mansur Antonio , Macchione Mariangela , Hirata Mario Hiroyuki , Nakagawa Naomi Kondo
Published: December 2020

Several circulating miRNAs identified in the plasma of smokers have been implicated as promoters of nasopharyngeal and lung carcinoma. To investigate the plasma profile of miRNAs in subjects who reduces the number of smoked cigarettes and who quit after six months. We accompanied 28 individuals enrolled in a Smoking Cessation Program over 6 months. At Baseline, clinical characteristics, co-morbidities, and smoking history were similar among subjects. After 6 months, two groups were defined: who successfully quitted smoking (named “quitters”, n = 18, mean age 57 years, 11 male) and who reduced the number of cigarettes smoked (20–90%) but failed to quit smoking (named “smokers”, n = 10, mean age 52 years, 3 male). No significant clinical changes were observed between groups at baseline and after a 6-month period, however, quitters showed significant downregulations in seven miRNAs at baseline: miR-17 (− 2.90-fold, p = 0.029), miR-20a (− 3.80-fold, p = 0.021); miR-20b (− 4.71-fold, p = 0.027); miR-30a (− 3.95-fold, p = 0.024); miR-93 (− 3.63-fold, p = 0.022); miR-125a (− 1.70-fold, p = 0.038); and miR-195 (− 5.37-fold, p = 0.002), and after a 6-month period in 6 miRNAs: miR-17 (− 5.30-fold, p = 0.012), miR-20a (− 2.04-fold, p = 0.017), miR-20b (− 5.44-fold, p = 0.017), miR-93 (− 4.00-fold, p = 0.041), miR-101 (− 4.82-fold, p = 0.047) and miR-125b (− 3.65-fold, p = 0.025). Using time comparisons, only quitters had significant downregulation in miR-301b (− 2.29-fold, p = 0.038) after 6-month. Reductions in the number of smoked cigarettes was insufficient to change the plasma profile of miRNA after 6 months. Only quitting smoking (100% reduction) significantly downregulated miR-301b related to hypoxic conditions, promotion of cell proliferation, decreases in apoptosis, cancer development, and progression as increases in radiotherapy and chemotherapy resistance.
Predictors of right ventricular function and size in patients with hypertrophic cardiomyopathy
Authors: Śpiewak Mateusz , Kłopotowski Mariusz , Mazurkiewicz Łukasz , Kowalik Ewa , Petryka-Mazurkiewicz Joanna , Miłosz-Wieczorek Barbara , Klisiewicz Anna , Witkowski Adam , Marczak Magdalena
Published: December 2020

We investigated factors associated with right ventricular (RV) function and size in hypertrophic cardiomyopathy (HCM) patients. Two hundred fifty-three consecutive HCM patients and 20 healthy volunteers underwent cardiac magnetic resonance examination. In addition to measuring RV function (ejection fraction—RVEF) and size (end-diastolic volume—RVEDV), each image was inspected for the presence of RV and left ventricular (LV) hypertrophy, and the maximal wall thickness of the left and right ventricles was recorded. HCM patients had higher RVEF and lower RVEDV than healthy volunteers and similar RV mass. The mean RV wall thickness was higher in HCM patients than in controls. LV late gadolinium enhancement (LGE) was present in 89.7% of patients, and RV LGE was present in 3.1% of patients (p < 0.0001). Univariate and multivariable analyses revealed that LVEF, peak LV outflow tract gradient, LV LGE, maximal LV wall thickness, and tricuspid regurgitation (TR) volume by magnetic resonance imaging were positive predictors of RVEF. In addition to TR volume, the only independent predictor of RVEF < 45% was LVEF (odds ratio = 0.80, 95% confidence interval 0.67–0.95). Multivariable analysis revealed that LVEDV and TR volume were positive predictors of RVEDV, whereas negative predictors were RVEF, maximal RV wall thickness, LV LGE, and age. Neither estimated systolic pulmonary artery pressure nor TR grade by echocardiography proved to be predictors of RVEF. There were no differences in either the maximal RV wall thickness or the maximal left ventricular (LV) wall thickness in patients stratified according to NYHA functional class (p = 0.93 and p = 0.15, respectively). There were no differences in mean RV wall thickness in patients categorised based on the number of clinical risk factors for sudden cardiac death (SCD), i.e., non-sustained ventricular tachycardia, family history of SCD, or unexplained syncope (p = 0.79). On the other hand, there was a weak positive association between RV hypertrophy and the estimated probability of SCD at 5 years (rho = 0.16, p = 0.01). RV systolic dysfunction measured as decreased RVEF was uncommon in HCM and was associated with poor LV systolic function. LV also had a significant impact on RV size.
Two GWAS-identified variants are associated with lumbar spinal stenosis and Gasdermin-C expression in Chinese population
Authors: Jiang Hua , Moro Abu , Liu Yang , Wang Jiaqi , Meng Dihua , Zhan Xinli , Wei Qingjun
Published: December 2020

The aim of this study is to investigate the expression levels of genome-wide association studies (GWAS)-identified variants near Gasdermin-C (GSDMC) and its association with lumbar disc degeneration (LDD) in a Chinese population. In accordance with previously reported findings, our study involved the top 4 variants; rs6651255, rs7833174, rs4130415, and rs7816342. A total of 800 participants, 400 LDD patients and 400 controls were involved in the study. The LDD patients were divided into two mutually exclusive subgroups: subgroup 1: lumbar disc herniation; subgroup 2: lumbar spinal stenosis. Genotyping were performed using TaqMan assay, and Enzyme-Linked Immunosorbent Assay (ELISA) used to measure the plasma GSDMC levels, while quantitative reverse-transcription (qRT)-PCR and immunohistochemistry (IHC) were used to evaluate the GSDMC expression levels. Among the studied variants, there were no statistically significant differences in allelic and genotypic frequencies between LDD patients and their controls (all P > 0.05). However, the subgroup analysis revealed a significant association between rs6651255 and rs7833174 in patients with lumbar spinal stenosis (subgroup 2). Furthermore, the max-statistic test revealed that the inheritance models of two variants of lumbar spinal stenosis were represented by the recessive model. The plasma and mRNA expression levels of GSDMC were significantly higher in patients with lumbar spinal stenosis compared with the control group (P < 0.05). Furthermore, the CC genotypes of rs6651255 and rs7833174 were significantly associated with increased plasma expression levels of GSDMC in patients with lumbar spinal stenosis (P < 0.01). Two GWAS-identified variants (rs6651255 and rs7833174) near GSDMC were associated with a predisposition to lumbar spinal stenosis. GSDMC protein and mRNA expression levels may have prognostic qualities as biomarkers for the existence, occurrence or development of lumbar spinal stenosis.
Aphid colony duration does not limit the abundance of Harmonia axyridis in the mediterranean area
Authors: Kindlmann Pavel , Štípková Zuzana , Dixon Anthony F. G.
Published: December 2020

There is a lot of information on the factors limiting the distributions of species in their native areas, but much less on those limiting potential changes in distributions of species that are currently spreading outside their present range, especially invasive species. However, this information is often quite essential, as it enables the prediction of future spatial distributions and local abundances of invasive species and the potential effect they may have on people and crops. Arising from glasshouse escapes in North America and the Netherlands, the invasive ladybird,Harmonia axyridis(Pallas) (Coleoptera: Coccinellidae), originally from the east Palearctic, has now spread across the whole of North America and most of Europe, both of which caused serious concern. Recent observations show that the spread ofH. axyridistowards the equator is limited. For example, it is quite rare in the Mediterranean area and its northward spread in South America is also quite slow, as if there was something limiting its spread towards the equator. European literature indicates it is neither climate, nor the distance of the Mediterranean from the original release location in the Netherlands. Therefore, we hypothesized that it may be biotic factors. In particular, the duration of colonies of prey (colony is the set of individuals in one patch, usually on one plant) that becomes shorter as one approaches the equator. This may lower the fitness of the predator and subsequently lead to low population densities. We test here, whether the duration of aphid colonies is shorter in the Mediterranean area than in Central Europe. Unfortunately, our data does not support this hypothesis. Therefore, the question of what limits the distribution ofH. axyridistowards the equator remains to be resolved.
Stability of tuberous sclerosis complex 2 is controlled by methylation at R1457 and R1459
Authors: Gen Seishu , Matsumoto Yu , Kobayashi Ken-Ichi , Suzuki Tsukasa , Inoue Jun , Yamamoto Yuji
Published: December 2020

Mutations in genes that encode components of tuberous sclerosis complex 2 (TSC2) are associated with tuberous sclerosis complex disease. TSC2 interacts with tuberous sclerosis complex 1 to form a complex that negatively regulates cell growth and proliferation via the inactivation of mechanistic target of rapamycin complex 1. The activity of TSC2 is mainly regulated via posttranslational modifications such as phosphorylation. However, the control of TSC2 activity is not entirely achieved by phosphorylation. In this study, we show that TSC2 is methylated at R1457 and R1459 by protein arginine methyltransferase 1 (PRMT1). Methylation of these two residues can affect the phosphorylation status through protein kinase B (Akt) of TSC2 at T1462 and is essential for TSC2 stability. Taken together, these findings indicate that novel posttranslational modifications are important for the regulation of TSC2 stability through PRMT1-mediated methylation.
Domain-specific functional coupling between dorsal and ventral systems during action perception
Authors: Yang Huichao , He Chenxi , Han Zaizhu , Bi Yanchao
Published: December 2020

Visual perception of actions and objects has been shown to activate different cortical systems: action perception system spanning more dorsally, across parietal, frontal, and dorsal temporal regions; object perception relying more strongly the ventral occipitotemporal cortex (VOTC). Compared to the well-established object-domain structure (e.g., faces vs. artifacts) in VOTC, it is less known whether the action perception system is constrained by similar domain principle and whether it communicates with the ventral object recognition system in a domain-specific manner. In a fMRI long-block experiment designed to evaluate both regional activity and task-based functional connectivity (FC) patterns, participants viewed animated videos of a human performing two domains of actions to the same set of meaningless shapes without object-domain information: social-communicative-actions (e.g., waving) and manipulation-actions (e.g., folding). We observed action-domain-specific activations, with the superior temporal sulcus and the right precentral region responding more strongly during social-communicative-action perception; the supramarginal gyrus, inferior and superior parietal lobe, and precentral gyrus during manipulation-action perception. The two domains of action perception systems communicated with VOTC in domain-specific manners: FC between the social-communicative-action system and the bilateral fusiform face area was enhanced during social-communicative-action perception; FC between the manipulation-action system and the left tool-preferring lateral occipitoptemporal cortex was enhanced during manipulation-action perception. There was a significant correlation between the FC-with-action-system and the local activity strength across VOTC voxels. Our findings highlight social- and manipulation-domains of human interaction as an overarching principle of both object and action perception systems, with domain-based functional communication across systems.
Cyclic on-chip bacteria separation and preconcentration
Authors: Ryzhkov Vitaly V. , Zverev Alexander V. , Echeistov Vladimir V. , Andronic Mikhail , Ryzhikov Ilya A. , Budashov Igor A. , Eremenko Arkadiy V. , Kurochkin Ilya N. , Rodionov Ilya A.
Published: December 2020

Nanoparticles and biological molecules high throughput robust separation is of significant interest in many healthcare and nanoscience industrial applications. In this work, we report an on-chip automatic efficient separation and preconcentration method of dissimilar sized particles within a microfluidic platform using integrated membrane valves controlled microfiltration. Micro-sized E. coli bacteria are sorted from nanoparticles and preconcentrated on a microfluidic chip with six integrated pneumatic valves (sub-100 nL dead volume) using hydrophilic PVDF filter with 0.45 μm pore diameter. The proposed on-chip automatic sorting sequence includes a sample filtration, dead volume washout and retentate backflush in reverse flow. We showed that pulse backflush mode and volume control can dramatically increase microparticles sorting and preconcentration efficiency. We demonstrate that at the optimal pulse backflush regime a separation efficiency of E. coli cells up to 81.33% at a separation throughput of 120.45 μL/min can be achieved. A trimmed mode when the backflush volume is twice smaller than the initial sample results in a preconcentration efficiency of E. coli cells up to 121.96% at a throughput of 80.93 μL/min. Finally, we propose a cyclic on-chip preconcentration method which demonstrates E. coli cells preconcentration efficiency of 536% at a throughput of 1.98 μL/min and 294% preconcentration efficiency at a 10.9 μL/min throughput.
Thermophysiological comfort of zinc oxide nanoparticles coated woven fabrics
Authors: Noman Muhammad Tayyab , Petru Michal , Amor Nesrine , Louda Petr
Published: December 2020

This study investigates physicochemical impact of ultrasonic irradiations on surface topography of woven fabrics. In a simultaneous in-situ sonochemical method, the synthesis and coating of zinc oxide nanoparticles (ZnO NPs) on woven textiles were successfully achieved. Different instruments i.e. Alambeta, moisture management tester, air permeability tester and permetester were utilised during experimentation for thermal evaluation, moisture transportation and air permeation. The results regarding thermophysiological comfort of ZnO coated fabrics were evaluated on the basis of thickness and ZnO NPs coated amount on fabrics. In addition, the achieved results depict the impact of sonication (pressure gradient) on surface roughness of cotton and polyester. The coating of ZnO NPs on fabrics, crystal phase identification, surface topography and fluctuations in surface roughness were estimated by inductively coupled plasma atomic emission spectroscopy (ICP-AES), X-ray Diffractometry (XRD), ultrahigh-resolution scanning electron microscopy (UHR-SEM) and energy dispersive X-ray (EDX). Moreover, thermophysiological properties i.e. thermal conductivity, absolute evaporative resistance, thermal absorptivity, air permeability, overall moisture management capacity and relative water vapour permeability of untreated and ZnO treated samples were evaluated by standard test methods.
Microwave-assisted conversion of palm kernel shell biomass waste to photoluminescent carbon dots
Authors: Ang Wei Lun , Boon Mee Cheldclos A. L. , Sambudi Nonni Soraya , Mohammad Abdul Wahab , Leo Choe Peng , Mahmoudi Ebrahim , Ba-Abbad Muneer , Benamor Abdelbaki
Published: December 2020

In the present work, palm kernel shell (PKS) biomass waste has been used as a low-cost and easily available precursor to prepare carbon dots (CDs) via microwave irradiation method. The impacts of the reacting medium: water and diethylene glycol (DEG), and irradiation period, as well as the presence of chitosan on the CDs properties, have been investigated. The synthesized CDs were characterized by several physical and optical analyses. The performance of the CDs in terms of bacteria cell imaging and copper (II) ions sensing and removal were also explored. All the CDs possessed a size of 6–7 nm in diameter and the presence of hydroxyl and alkene functional groups indicated the successful transformation of PKS into CDs with carbon core consisting of C = C elementary unit. The highest quantum yield (44.0%) obtained was from the CDs synthesised with DEG as the reacting medium at irradiation period of 1 min. It was postulated that the high boiling point of DEG resulted in a complete carbonisation of PKS into CDs. Subsequently, the absorbance intensity and photoluminescence intensity were also much higher compared to other precursor formulation. All the CDs fluoresced in the bacteria culture, and fluorescence quenching occurred in the presence of heavy metal ions. These showed the potential of CDs synthesised from PKS could be used for cellular imaging and detection as well as removal of heavy metal ions.
Effect of various abiotic stressors on some biochemical indices of Lepidium sativum plants
Authors: Al-Sammarraie Omar N. , Alsharafa Khalid Y. , Al-limoun Muhamad O. , Khleifat Khaled M. , Al-Sarayreh Sameeh A. , Al-Shuneigat Jehad M. , Kalaji Hazem M.
Published: December 2020

In this study, the regulation of ascorbate peroxidase (APX) specific activity, anthocyanin, carotenoid, hydrogen peroxide, lipid peroxidation, and protein levels in cress leaves in response to different abiotic stresses were investigated. The total APX specific activity was significantly elevated after 9 days of drought treatment, short-term (2 h) exposure to 10, 100 and 370 µE of light, long-term exposure (at least 6 days) to 100 mM NaCl versus the specific APX activity in the controls. Furthermore, a significant change in total APX activity was detected in response to treatment with different temperatures; this change was an early response to 4 °C and 30 °C for a maximum of 4 h, while short-term exposure to 35 °C did not change total APX activity. The results of the present study revealed that plants have a wide range of mechanisms to cope with different stresses that possibly involve morphological changes. The results indicated that Lepidium sativum plants launch common protective pathways only under drought, salinity and high light stresses, while other protective mechanisms/strategies could be responsible for increasing the plants tolerance towards temperature and low light. Future studies will investigate changes in the photosynthetic quantum yield and specific target metabolites, proteins, and nonenzymatic antioxidants.
Analysis of volatile emissions from grape berries infected with Aspergillus carbonarius using hyphenated and portable mass spectrometry
Authors: Giannoukos Konstantinos , Giannoukos Stamatios , Lagogianni Christina , Tsitsigiannis Dimitrios I. , Taylor Stephen
Published: December 2020

Mycotoxins represent a serious risk for human and animal health. Οchratoxin A (OTA) is a carcinogenic mycotoxin produced by A. carbonarius that constitutes a severe problem for viticulture. In this study, we investigate the development of novel detection and on-line monitoring approaches for the detection of OTA in the field (i.e. out of the chemical laboratory) using advanced molecular sensing. Both stand-alone and hyphenated mass spectrometry (MS) based systems (e.g. Time-of-Flight ToF–MS and gas chromatography GC combined with MS) and compact portable membrane inlet MS (MIMS) have been employed for the first time to detect and monitor volatile emissions of grape berries infected by the fungus Aspergillus carbonarius. In vacuo (electron impact—EI) and ambient ionisation (electrospray ionisation—ESI) techniques were also examined. On-line measurements of the volatile emissions of grape berries, infected by various strains of A. carbonarius with different toxicity levels, were performed resulting in different olfactory chemical profiles with a common core of characteristic mass fragments, which could be eventually used for on-site detection and monitoring allowing consequent improvement in food security.
A cross-specific multiplicative binomial recursive model for the analysis of perinatal mortality in a diallel cross among three varieties of Iberian pig
Authors: Varona Luis , Noguera José Luis , Casellas Joaquim , de Hijas Melani Martín , Rosas Juan Pablo , Ibáñez-Escriche Noelia
Published: December 2020

Perinatal piglet mortality is an important factor in pig production from economic and animal welfare perspectives; however, the statistical analysis of mortality is difficult because of its categorical nature. Recent studies have suggested that a binomial model for the survival of each specific piglet with a logit approach is appropriate and that recursive relationships between traits are useful for taking into account non-genetic relationships with other traits. In this study, the recursive binomial model is expanded in two directions: (1) the recursive phenotypic dependence among traits is allowed to vary among groups of individuals or crosses, and (2) the binomial distribution is replaced by the multiplicative binomial distribution to account for over or underdispersion. In this study, five recursive multiplicative binomial models were used to obtain estimates of the Dickerson crossbreeding parameters in a diallel cross among three varieties of Iberian pigs [Entrepelado (EE), Torbiscal (TT), and Retinto (RR)]. Records (10,255) from 2110 sows were distributed as follows: EE (433 records, 100 sows), ER (2336, 527), ET (942, 177), RE (806, 196), RR (870, 175), RT (2450, 488), TE (193, 36), TR (1993, 359), and TT (232, 68). Average litter size [Total Number Born (TNB)] and number of stillborns (SB) were 8.46 ± 2.27 and 0.25 ± 0.72, respectively. The overdispersion was evident with all models. The model with the best fit included a linear recursive relationship between TNB and the logit of$$\phi$$ϕof the multiplicative binomial distribution, and it implies that piglet mortality increases with litter size. Estimates of direct effects showed small differences among populations. The analysis of maternal effects indicated that the dams whose mothers were EE had a larger SB, while dams with RR mothers reduced the probability of born dead. The posterior estimates of heterosis suggested a reduction in SB when the sow is crosbred. The multiplicative binomial distribution provides a useful alternative to the binomial distribution when there is overdispersion in the data. Recursive models can be used for modeling non-genetic relationships between traits, even if the phenotypic dependency between traits varies among environments or groups of individuals. Piglet perinatal mortality increased with TNB and is reduced by maternal heterosis.
The effect of thermal treatment on ac/dc conductivity and current fluctuations of PVDF/NMP/[EMIM][TFSI] solid polymer electrolyte
Authors: Sedlak Petr , Gajdos Adam , Macku Robert , Majzner Jiri , Holcman Vladimir , Sedlakova Vlasta , Kubersky Petr
Published: December 2020

The experimental study deals with the investigation of the effect of diverse crystallinity of imidazolium ionic-liquid-based SPE on conductivity and current fluctuations. The experimental study was carried out on samples consisting of [EMIM][TFSI] as ionic liquid, PVDF as a polymer matrix and NMP as a solvent. After the deposition, the particular sample was kept at an appropriate temperature for a specific time in order to achieve different crystalline forms of the polymer in the solvent, since the solvent evaporation rate controls crystallization. The ac/dc conductivities of SPEs were investigated across a range of temperatures using broadband dielectric spectroscopy in terms of electrical conductivity. In SPE samples of the higher solvent evaporation rate, the real parts of conductivity spectra exhibit a sharper transition during sample cooling and an increase of overall conductivity, which is implied by a growing fraction of the amorphous phase in the polymer matrix in which the ionic liquid is immobilized. The conductivity master curves illustrate that the changing of SPEs morphology is reflected in the low frequency regions governed by the electrode polarization effect. The dc conductivity of SPEs exhibits Vogel–Fulcher–Tammann temperature dependence and increases with the intensity of thermal treatment. Spectral densities of current fluctuations showed that flicker noise, thermal noise and shot noise seems to be major noise sources in all samples. The increase of electrolyte conductivity causes a decrease in bulk resistance and partially a decrease in charge transfer resistance, while also resulting in an increase in shot noise. However, the change of electrode material results in a more significant change of spectral density of current fluctuations than the modification of the preparation condition of the solid polymer electrolyte. Thus, the contact noise is considered to contribute to overall current fluctuations across the samples.