bluuebunny/crossref_metadata_2025 huggingface dataset:
Predicting Panel of Metabolism and Immune-Related Genes for the Prognosis of Human Ovarian Cancer
Authors: Zhang Lingyun , Sun Wenwen , Ren Weimin , Zhang Jinguo , Xu Guoxiong
Published: July 2021

Objective

Ovarian cancer (OC) is a high deadly gynecologic cancer with a poor prognosis. The identification of genomic aberrations could predict the clinical prognosis of OC patients and may eventually develop new therapeutic strategies in the future. The purpose of this study is to create comprehensive co-expressed gene networks correlated with metabolism and the immune process of OC.

Methods

The transcriptome profiles of TCGA OC datasets and GSE26193 datasets were analyzed. The mRNA expression level, hub genomic alteration, patient’s survival status, and tumor cell immune microenvironment of metabolism-related genes were analyzed from TCGA, GTEX, Oncomine, Kaplan-Meier Plotter, cBioPortal, TIMER, ESTIMATE, and CIBERSORT databases. We further validated the mRNA and protein expression levels of these hub genes in OC cell lines and tissues using qRT-PCR and immunohistochemistry.

Results

The LASSO-Cox regression analyses unveiled seven differently expressed metabolism-related genes, including GFPT2, DGKD, ACACB, ACSM3, IDO1, TPMT, and PGP. The Cox regression risk model could be served as an independent marker to predict the overall clinical survival of OC patients. The expression of GFPT2, DGKD, ACACB, and ACSM3 were downregulated in OC tissues, while IDO1, TPMT, and PGP were upregulated in OC tissues than in control. Moreover, DGKD and IDO1 were significantly associated with the human immune system.

Conclusion

The differently expressed metabolism-related genes were identified to be a risk model in the prediction of the prognosis of OC. The identified hub genes related to OC prognosis may play important roles in influencing both human metabolism and the immune system.
Impacts of Small RNAs and Their Chaperones on Bacterial Pathogenicity
Authors: Djapgne Louise , Oglesby Amanda G.
Published: July 2021

Bacterial small RNAs (sRNAs) are critical post-transcriptional regulators that exert broad effects on cell physiology. One class of sRNAs, referred to as trans-acting sRNAs, base-pairs with mRNAs to cause changes in their stability or translation. Another class of sRNAs sequesters RNA-binding proteins that in turn modulate mRNA expression. RNA chaperones play key roles in these regulatory events by promoting base-pairing of sRNAs to mRNAs, increasing the stability of sRNAs, inducing conformational changes on mRNA targets upon binding, or by titrating sRNAs away from their primary targets. In pathogenic bacteria, sRNAs and their chaperones exert broad impacts on both cell physiology and virulence, highlighting the central role of these systems in pathogenesis. This review provides an overview of the growing number and roles of these chaperone proteins in sRNA regulation, highlighting how these proteins contribute to bacterial pathogenesis.
The Oxymoron of Carbon Dioxide Removal: Escaping Carbon Lock-In and yet Perpetuating the Fossil Status Quo?
Authors: Asayama Shinichiro
Published: July 2021

There appears to be a paradox in the debate over carbon dioxide removal (CDR) technologies. On the one hand, CDR is recognised as a crucial technical option to offset residual carbon emissions from fossil fuel use, so that it can help a transition to the net-zero energy system. But on the other hand, a serious concern is raised about CDR as a way to circumvent necessary emissions reduction, hence perpetuating the status quo of fossil fuel use. This apparent paradox of CDR, however, has less to do with technology itself but more with the difficulty to move away fromcarbon lock-in—the deeply entrenched fossil-fuel-based energy system. The challenge of decarbonisation is indeed about eroding the deep lock-ins that perpetuate the production and consumption of fossil fuels. To understand the role of CDR in overcoming carbon lock-in, looking back the past debate on carbon capture and storage (CCS) is instructive. Although both CCS and CDR are criticised for keeping the fossil status quo, there is a crucial difference between them. Unlike CCS, CDR can possibly avoid the risk ofreinforced lock-in, given its physical decoupling from fossil fuel use. And yet CDR has the risk ofundue substitutionthat continues unjustly fossil carbon emissions. A change of the framing question is thus needed to puzzle out the paradox of CDR. To rightly place CDR in the challenge of rapid decarbonisation, we should ask more how CDR technologies can be used in alignment with a managed decline to fossil fuel production.
WNT3A rs752107(C > T) Polymorphism Is Associated With an Increased Risk of Essential Hypertension and Related Cardiovascular Diseases
Authors: Ren Huan , Luo Jian-Quan , Ouyang Fan , Cheng Li , Chen Xiao-Ping , Zhou Hong-Hao , Huang Wei-Hua , Zhang Wei
Published: July 2021

Essential Hypertension (EH) results in the burden of cardiovascular disease (CVD) such as Heart Failure (HF) and Ischemic Stroke (IS). A rapidly emerging field involving the role of Wnt/β-catenin signaling pathway in cardiovascular development and dysfunction has recently drawn extensive attention. In the present study, we conducted a genetic association between genomic variants in Wnt/β-catenin signaling pathway and EH, HF, IS. A total of 95 SNPs in 12 Wnt signaling genes (WNT3A, WNT3, WNT4, DKK1, DKK2, LRP5, LRP6, CTNNB1, APC, FZD1, FRZB, SFRP1) were genotyped in 1,860 participants (440 patients with EH, 535 patients with HF, 421 patients with IS and 464 normal control subjects) using Sequenom MassArray technology. WNT3A rs752107(C > T) was strongly associated with an increased risk of EH, HF and IS. Compared with WNT3A rs752107 CC genotype, the CT genotype carriers had a 48% increased risk of EH (OR = 1.48, 95% CI = 1.12–1.96, P = 0.006), the TT genotype conferred a 139% increased risk of EH (OR = 2.39, 95% CI = 1.32–4.34, P = 0.003). Regarding HF and IS, the risk of HF in the T allele carriers (CT + TT) was nearly increased by 58% (OR = 1.58, 95% CI = 1.22–2.04, P = 4.40 × 10−4) and the risk of IS was increased by 37% (OR = 1.37, 95% CI = 1.04–1.79, P = 0.025). Expression quantitative trait loci (eQTL) analysis indicated that rs752107 C allele corresponded to a significant reduction of WNT3A expression. We described a genetic variant of WNT3A rs752107 in Wnt/β-catenin signaling strongly associated with the risk of EH, HF and IS for the first time.
The Forming Age and the Evolution Process of the Brine Lithium Deposits in the Qaidam Basin Based on Geochronology and Mineral Composition
Authors: Ma Zhe , Han Fengqing , Chen Tianyuan , Yi Lei , Lu Xiaohang , Chen Fuhong , Liu Xiaobao , Yuan Wenhu
Published: July 2021

Lithium ore deposits are divided into pegmatite and brine deposits. The Puna Plateau and the Qinghai–Tibetan Plateau (QTP) are home to the most abundant brine lithium deposits worldwide. Very few studies have investigated the chronology of brine lithium deposits. This paper reports the Optically Stimulated Luminescence (OSL) dating measurements for typical brine lithium deposits at QTP, including East Taijnar Salt Lake, West Taijnar Salt Lake, and Yiliping Salt Lake in the central Qaidam Basin. Combining the results of OSL dating with previous studies and mineral composition obtained by X-ray diffraction analysis (XRD), this study summarizes the age and characteristics of the climatic environment during the formation of brine lithium deposits in the Qaidam Basin. The main results are: 1) Brine lithium deposits in the Qaidam Basin began to form since 40 ka. Brine lithium deposits in South America formed during the middle Pleistocene and late Pleistocene, and are older than the deposits in the Qaidam Basin. The lithium deposits of Tibet formed around 4 ka, are the youngest. 2) The climate in East Taijnar Salt Lake and West Taijnar Salt Lake was extremely cold and dry during 27–4.6 ka, with a relatively humid climatic condition at ∼10 ka. After 4.6 ka, the environment was comparatively more humid around both lakes. Yiliping Salt Lake had a dry climate since 38.09 ka, and the climate in the Three Lakes area is mainly controlled by the westerlies in the Holocene; and 3) East Taijnar Salt Lake, West Taijnar Salt Lake and Yiliping Salt Lake were located in the same secondary basin during the late Pleistocene. However, tectonic activity around 40 ka led to the evolution of Yiliping Salt Lake into an independent basin. East Taijnar Salt Lake and West Taijnar Salt Lake separated around 27 ka, and then deposited the lower salt layers until the Holocene. The substantial amount of detrital minerals that the Nalinggele River brought during the Holocene led to a brief desalination of East Taijnar Salt Lake. The upper salt layer was deposited in East Taijnar Salt Lake and West Taijnar Salt Lake during this period due to the extremely dry climate.
A Novel Method for Mendelian Randomization Analyses With Pleiotropy and Linkage Disequilibrium in Genetic Variants From Individual Data
Authors: Wang Yuquan , Li Tingting , Fu Liwan , Yang Siqian , Hu Yue-Qing
Published: July 2021

Mendelian randomization makes use of genetic variants as instrumental variables to eliminate the influence induced by unknown confounders on causal estimation in epidemiology studies. However, with the soaring genetic variants identified in genome-wide association studies, the pleiotropy, and linkage disequilibrium in genetic variants are unavoidable and may produce severe bias in causal inference. In this study, by modeling the pleiotropic effect as a normally distributed random effect, we propose a novel mixed-effects regression model-based method PLDMR, pleiotropy and linkage disequilibrium adaptive Mendelian randomization, which takes linkage disequilibrium into account and also corrects for the pleiotropic effect in causal effect estimation and statistical inference. We conduct voluminous simulation studies to evaluate the performance of the proposed and existing methods. Simulation results illustrate the validity and advantage of the novel method, especially in the case of linkage disequilibrium and directional pleiotropic effects, compared with other methods. In addition, by applying this novel method to the data on Atherosclerosis Risk in Communications Study, we conclude that body mass index has a significant causal effect on and thus might be a potential risk factor of systolic blood pressure. The novel method is implemented in R and the corresponding R code is provided for free download.
Biallelic COA7-Variants Leading to Developmental Regression With Progressive Spasticity and Brain Atrophy in a Chinese Patient
Authors: Ban Rui , Liu Zhimei , Shimura Masaru , Tong Xiao , Wang Junling , Yang Lei , Xu Manting , Xiao Jing , Murayama Kei , Elstner Matthias , Prokisch Holger , Fang Fang
Published: July 2021

Objective

The cytochrome c oxidase assembly factor 7 (COA7) gene encodes a protein localized to mitochondria that is involved in the assembly of mitochondrial respiratory chain complex IV. Here, we report the clinical, genetic and biochemical analysis of a female patient with suspected mitochondrial disorder and novel variants in COA7, that presented with a considerably different phenotype and age of onset than the five COA7 patients reported to date.

Methods

We performed trio-exome sequencing in the affected patient and both parents. To verify the pathogenicity of the detected variants in COA7, mitochondrial enzyme activities and oxygen consumption rate were investigated in fibroblasts of the patient and her parents.

Results

A Chinese girl was referred at 9 months of age with a history of developmental delay and regression since 3 months of age. In the following months, she lost previously acquired skills and developed progressive spasticity of the lower extremities. Trio-exome sequencing revealed compound heterzygous variants in COA7 (c.511G > A/p.Ala171Thr and c.566A > G/p.Asn189Ser). Functional validation experiments revealed isolated complex IV deficiency and a significantly reduced mitochondrial respiration rate in patient-derived fibroblasts.

Interpretation

Hitherto, characteristic features of COA7 patients were described as slowly progressing neuropathy and spinocerebellar ataxia, starting at the toddler age and progressing into adulthood. In contrast, our patient was reported to show developmental delay from 3 months of age, which was found to be due to a rapidly progressive encephalopathy and brain atrophy seen at 9 months of age. Unexpectedly, the genetic investigation revealed a COA7-associated mitochondrial disease, which was confirmed functionally. Thus, this report broadens the genetic and clinical spectrum of this heterogeneous mitochondriopathy and highlights the value of the presented unbiased approach.
Filtering High-Dimensional Methylation Marks With Extremely Small Sample Size: An Application to Gastric Cancer Data
Authors: Chen Xin , Zhang Qingrun , Chekouo Thierry
Published: July 2021

DNA methylations in critical regions are highly involved in cancer pathogenesis and drug response. However, to identify causal methylations out of a large number of potential polymorphic DNA methylation sites is challenging. This high-dimensional data brings two obstacles: first, many established statistical models are not scalable to so many features; second, multiple-test and overfitting become serious. To this end, a method to quickly filter candidate sites to narrow down targets for downstream analyses is urgently needed. BACkPAy is a pre-screening Bayesian approach to detect biological meaningful patterns of potential differential methylation levels with small sample size. BACkPAy prioritizes potentially important biomarkers by the Bayesian false discovery rate (FDR) approach. It filters non-informative sites (i.e., non-differential) with flat methylation pattern levels across experimental conditions. In this work, we applied BACkPAy to a genome-wide methylation dataset with three tissue types and each type contains three gastric cancer samples. We also applied LIMMA (Linear Models for Microarray and RNA-Seq Data) to compare its results with what we achieved by BACkPAy. Then, Cox proportional hazards regression models were utilized to visualize prognostics significant markers with The Cancer Genome Atlas (TCGA) data for survival analysis. Using BACkPAy, we identified eight biological meaningful patterns/groups of differential probes from the DNA methylation dataset. Using TCGA data, we also identified five prognostic genes (i.e., predictive to the progression of gastric cancer) that contain some differential methylation probes, whereas no significant results was identified using the Benjamin-Hochberg FDR in LIMMA. We showed the importance of using BACkPAy for the analysis of DNA methylation data with extremely small sample size in gastric cancer. We revealed that RDH13, CLDN11, TMTC1, UCHL1, and FOXP2 can serve as predictive biomarkers for gastric cancer treatment and the promoter methylation level of these five genes in serum could have prognostic and diagnostic functions in gastric cancer patients.
Myeloid-Derived Suppressor Cells Dampen Airway Inflammation Through Prostaglandin E2 Receptor 4
Authors: van Geffen Chiel , Deißler Astrid , Beer-Hammer Sandra , Nürnberg Bernd , Handgretinger Rupert , Renz Harald , Hartl Dominik , Kolahian Saeed
Published: July 2021

Emerging evidence suggests a mechanistic role for myeloid-derived suppressor cells (MDSCs) in lung diseases like asthma. Previously, we showed that adoptive transfer of MDSCs dampens lung inflammation in murine models of asthma through cyclooxygenase-2 and arginase-1 pathways. Here, we further dissected this mechanism by studying the role and therapeutic relevance of the downstream mediator prostaglandin E2 receptor 4 (EP4) in a murine model of asthma. We adoptively transferred MDSCs generated using an EP4 agonist in a murine model of asthma and studied the consequences on airway inflammation. Furthermore, pegylated human arginase-1 was used to model MDSC effector activities. We demonstrate that the selective EP4 agonist L-902,688 increased the number and suppressive activity of MDSCs through arginase-1 and nitric oxide synthase-2. These results showed that adoptive transfer of EP4-primed MDSCs, EP4 agonism alone or arginase-1 administration ameliorated lung inflammatory responses and histopathological changes in asthmatic mice. Collectively, our results provide evidence that MDSCs dampen airway inflammation in murine asthma through a mechanism involving EP4.
Small Molecule Microcrystal Electron Diffraction for the Pharmaceutical Industry–Lessons Learned From Examining Over Fifty Samples
Authors: Bruhn Jessica F. , Scapin Giovanna , Cheng Anchi , Mercado Brandon Q. , Waterman David G. , Ganesh Thejusvi , Dallakyan Sargis , Read Brandon N. , Nieusma Travis , Lucier Kyle W. , Mayer Megan L. , Chiang Nicole J. , Poweleit Nicole , McGilvray Philip T. , Wilson Timothy S. , Mashore Michael , Hennessy Camille , Thomson Sean , Wang Bo , Potter Clinton S. , Carragher Bridget
Published: July 2021

The emerging field of microcrystal electron diffraction (MicroED) is of great interest to industrial researchers working in the drug discovery and drug development space. The promise of being able to routinely solve high-resolution crystal structures without the need to grow large crystals is very appealing. Despite MicroED’s exciting potential, adoption across the pharmaceutical industry has been slow, primarily owing to a lack of access to specialized equipment and expertise. Here we present our experience building a small molecule MicroED service pipeline for members of the pharmaceutical industry. In the past year, we have examined more than fifty small molecule samples submitted by our clients, the majority of which have yielded data suitable for structure solution. We also detail our experience determining small molecule MicroED structures of pharmaceutical interest and offer some insights into the typical experimental outcomes. This experience has led us to conclude that small molecule MicroED adoption will continue to grow within the pharmaceutical industry where it is able to rapidly provide structures inaccessible by other methods.
Development and Validation of a Prognostic Model for Cognitive Impairment in Parkinson’s Disease With REM Sleep Behavior Disorder
Authors: Chen Fangzheng , Li Yuanyuan , Ye Guanyu , Zhou Liche , Bian Xiaolan , Liu Jun
Published: July 2021

The presentation and progression of Parkinson’s disease (PD) are not uniform, but the presence of rapid eye movement sleep behavior disorder (RBD) in PD patients may indicate a worse prognosis than isolated PD. Increasing evidence suggests that patients with comorbid PD and RBD (PD-RBD) are more likely to develop cognitive impairment (CI) than those with isolated PD; however, the predictors of CI in PD-RBD patients are not well understood. This study aimed to develop a prognostic model for predicting mild cognitive impairment (MCI) in PD-RBD patients. The data of PD-RBD patients were extracted from the Parkinson’s Progression Markers Initiative study (PPMI), and the sample was randomly divided into a training set (n = 96) and a validation set (n = 24). PD-MCI as defined by the level II Movement Disorder Society (MDS) diagnostic criteria was the outcome of interest. The demographic features, clinical assessments, dopamine transporter (DAT) imaging data, cerebrospinal fluid (CSF) analyses and genetic data of PD patients were considered candidate predictors. We found that performance on the University of Pennsylvania Smell Identification Test (UPSIT), the mean signal and asymmetry index of the putamen on DAT imaging, p-tau/α-syn and p-tau in CSF, and rs55785911 genotype were predictors of PD-MCI in PD-RBD patients. A C-index of 0.81 was obtained with this model, and a C-index of 0.73 was obtained in the validation set. Favorable results of calibrations and decision curve analysis demonstrated the efficacy and feasibility of this model. In conclusion, we developed a prognostic model for predicting MCI in PD-RBD patients; the model displayed good discrimination and calibration and may be a convenient tool for clinical application. Larger samples and external validation sets are needed to validate this model.
Recent Advancements in Photocatalytic Valorization of Plastic Waste to Chemicals and Fuels
Authors: Chen Aizhu , Yang Min-Quan , Wang Sibo , Qian Qingrong
Published: July 2021

The continuous rise in plastic waste raises serious concerns about the ensuing effects on the pollution of global environment and loss of valuable resources. Developing efficient approach to recycle the plastic has been an urgent demand for realizing a sustainable circular economy. Photocatalytic valorization directly utilizes solar energy to transform plastic pollutant into chemicals and fuels, which is hardly implemented by traditional mechanical recycling and incineration strategies, thus offering a promising approach to address the contemporary waste and energy challenges. Here, we focus on the recent advances in the high-value utilization of plastic waste through photocatalysis. The basic principle and different reaction pathways for the photocatalytic valorization of plastic waste are presented. Then, the developed representative photocatalyst systems and converted products are elaborately discussed. At last, the review closes with critical thoughts on research challenges along with some perspectives for further development of this emerging and fascinating filed.
Warfarin Treatment Is Associated to Increased Internal Carotid Artery Calcification
Authors: Nuotio Krista , Koskinen Suvi M. , Mäkitie Laura , Tuimala Jarno , Ijäs Petra , Heikkilä Hanna M. , Saksi Jani , Vikatmaa Pirkka , Sorto Pia , Kasari Sonja , Paakkari Ilari , Silvennoinen Heli , Valanne Leena , Mäyränpää Mikko I. , Soinne Lauri , Kovanen Petri T. , Lindsberg Perttu J.
Published: July 2021

Background: Long-term treatment with the vitamin K antagonist warfarin is widely used for the prevention of venous thrombosis and thromboembolism. However, vitamin K antagonists may promote arterial calcification, a phenomenon that has been previously studied in coronary and peripheral arteries, but not in extracranial carotid arteries. In this observational cohort study, we investigated whether warfarin treatment is associated with calcification of atherosclerotic carotid arteries.

Methods: Overall, 500 consecutive patients underwent carotid endarterectomy, 82 of whom had received long-term warfarin therapy. The extent of calcification was assessed with preoperative computed tomography angiography, and both macroscopic morphological grading and microscopic histological examination of each excised carotid plaque were performed after carotid endarterectomy.

Results: Compared with non-users, warfarin users had significantly more computed tomography angiography-detectable vascular calcification in the common carotid arteries (odds ratio 2.64, 95% confidence interval 1.51–4.63, P < 0.001) and even more calcification in the internal carotid arteries near the bifurcation (odds ratio 18.27, 95% confidence interval 2.53–2323, P < 0.001). Histological analysis revealed that the intramural calcified area in plaques from warfarin users was significantly larger than in plaques from non-users (95% confidence interval 3.36–13.56, P = 0.0018).

Conclusions: Long-lasting warfarin anticoagulation associated with increased calcification of carotid atherosclerotic plaques, particularly in locations known to be the predilection sites of stroke-causing plaques. The clinical significance of this novel finding warrants further investigations.
Solanaceous Vegetables and Colorectal Cancer Risk: A Hospital-Based Matched Case-Control Study in Northeast China
Authors: Liu Yang , Li Simin , Jiang Liqing , Zhang Yuchong , Li Zhi , Shi Jing
Published: July 2021

Background: Dietary factors are regarded as an essential influence in changing colorectal cancer (CRC) risk. However, there is no clear conclusion of the relationship between solanaceous vegetables and colorectal cancer at present. The study aimed to evaluate the intake of solanaceous vegetables in relation to colorectal cancer risk among the Northeast Chinese population.

Methods: We carried out a hospital-based case-control study in three hospitals in Northeast China from 2009 to 2011. The study finally included 833 patients with CRC and 833 controls matched separately according to age, gender, and city of residence. We applied a structural questionnaire to collect demographic characteristics and dietary information by face-to-face interview and adopted conditional logistic regression to calculate odds ratios (ORs) and 95% confidence intervals (CIs). Stratified analyses were conducted by sex and subsites.

Results: There was no obvious correlation between total intake of solanaceous plants and CRC risk. The adjusted OR for the highest quartile and the lowest quartile was 1 (95% CI: 0.68–1.5). Certain types of solanaceous vegetables were negatively associated with the risk of CRC, such as eggplant (OR = 0.42; 95% CI:0.29–0.62) and sweet pepper (OR = 0.48; 95%CI: 0.33–0.7). Potato was found to have a positive correlation with CRC (OR = 1.76; 95% CI: 1.26–2.47). In the stratified analyses by gender, total solanaceous vegetables intake was inversely associated with CRC risk only in men. In the stratified analyses of cancer subsites, no significant association between total solanaceous vegetables intake and CRC risk was found.

Conclusion: No findings showed that the intake of total solanaceous vegetables was related to the reduction of CRC risk. However, specific types of solanaceous vegetables indicated an inverse association with CRC risk.
Downregulation of ATXN3 Enhances the Sensitivity to AKT Inhibitors (Perifosine or MK-2206), but Decreases the Sensitivity to Chemotherapeutic Drugs (Etoposide or Cisplatin) in Neuroblastoma Cells
Authors: Gong Baocheng , Zhang Jinhua , Hua Zhongyan , Liu Zhihui , Thiele Carol J. , Li Zhijie
Published: July 2021

Background

Chemotherapy resistance is the major cause of failure in neuroblastoma (NB) treatment. ATXN3 has been linked to various types of cancer and neurodegenerative diseases; however, its roles in NB have not been established. The aim of our study was to explore the role of ATXN3 in the cell death induced by AKT inhibitor (perifosine or MK-2206) or chemotherapy drugs (etoposide or cisplatin) in NB cells.

Methods

The expressions of ATXN3 and BCL-2 family members were detected by Western blot. Cell survival was evaluated by CCK8, cell confluence was measured by IncuCyte, and apoptosis was detected by flow cytometry. AS and BE2 were treated with AKT inhibitors or chemotherapeutics, respectively.

Results

Downregulation of ATXN3 did not block, but significantly increased the perifosine/MK-2206-induced cell death. Among the BCL-2 family members, the expression of pro-apoptotic protein BIM and anti-proapoptotic protein Bcl-xl expression increased significantly when ATXN3 was down-regulated. Downregulation of BIM protected NB cells from the combination of perifosine/MK-2206 and ATXN3 downregulation. Downregulation of ATXN3 did not increase, but decrease the sensitivity of NB cells to etoposide/cisplatin, and knockdown of Bcl-xl attenuated this decrease in sensitivity.

Conclusion

Downregulation of ATXN3 enhanced AKT inhibitors (perifosine or MK-2206) induced cell death by BIM, but decreased the cell death induced by chemotherapeutic drugs (etoposide or cisplatin) via Bcl-xl. The expression of ATXN3 may be an indicator in selecting different treatment regimen.
The Quantum Optics of Asymmetric Mirrors With Coherent Light Absorption
Authors: Dawson Benjamin , Furtak-Wells Nicholas , Mann Thomas , Jose Gin , Beige Almut
Published: July 2021

The local observables of the quantised electromagnetic field near a mirror-coated interface depend strongly on the properties of the media on both sides. In macroscopic quantum electrodynamics, this fact is taken into account with the help of optical Green’s functions which correlate the position of an observer with all other spatial positions and photon frequencies. Here we present an alternative, more intuitive approach and obtain the local field observables with the help of a quantum mirror image detector method. In order to correctly normalise electric field operators, we demand that spontaneous atomic decay rates simplify to their respective free space values far away from the reflecting surface. Our approach is interesting, since mirror-coated interfaces constitute a common basic building block for quantum photonic devices.
Lateral Preoptic Area Neurons Activated by Angiotensin-(1–7) Increase Intravesical Pressure: A Novel Feature in Central Micturition Control
Authors: Lamy Gustavo B. , Cafarchio Eduardo M. , do Vale Bárbara , Antonio Bruno B. , Venancio Daniel P. , de Souza Janaina S. , Maciel Rui M. , Giannocco Gisele , Aronsson Patrik , Sato Monica A.
Published: July 2021

Central micturition control and urine storage involve a multisynaptic neuronal circuit for the efferent control of the urinary bladder. Electrical stimulation of the lateral preoptic area (LPA) at the level of the decussation of the anterior commissure in cats evokes relaxation of the bladder, whereas ventral stimulation of LPA evokes vigorous contraction. Endogenous Angiotensin-(1–7) [(Ang-(1–7)] synthesis depends on ACE-2, and its actions on binding to Mas receptors, which were found in LPA neurons. We aimed to investigate the Ang-(1–7) actions into the LPA on intravesical pressure (IP) and cardiovascular parameters. The gene and protein expressions of Mas receptors and ACE-2 were also evaluated in the LPA. Angiotensin-(1–7) (5 nmol/μL) or A-779 (Mas receptor antagonist, 50 nmol/μL) was injected into the LPA in anesthetized female Wistar rats; and the IP, mean arterial pressure (MAP), heart rate (HR), and renal conductance (RC) were recorded for 30 min. Unilateral injection of Ang-(1–7) into the LPA increased IP (187.46 ± 37.23%) with peak response at ∼23–25-min post-injection and yielded no changes in MAP, HR, and RC. Unilateral or bilateral injections of A-779 into the LPA decreased IP (−15.88 ± 2.76 and −27.30 ± 3.40%, respectively) and elicited no changes in MAP, HR, and RC. The genes and the protein expression of Mas receptors and ACE-2 were found in the LPA. Therefore, the LPA is an important part of the circuit involved in the urinary bladder control, in which the Ang-(1–7) synthetized into the LPA activates Mas receptors for increasing the IP independent on changes in RC and cardiovascular parameters.
COVID-19 Pandemic Worry and Vaccination Intention: The Mediating Role of the Health Belief Model Components
Authors: Iacob Claudia I. , Ionescu Daniela , Avram Eugen , Cojocaru Daniel
Published: July 2021

Given the negative consequences of the ongoing COVID-19 pandemic on public health, his study aimed at investigating: (1) the differences between adults with and without chronic illness in buying behavior, vaccination intention, pandemic worry, and the health belief model (HBM) components; (2) the HBM components as mediators of the relationship between pandemic worry and vaccination intention. The sample consisted of 864 adults (66.6% females, Mage = 47.61, SD = 9.23), of which 20.5% reported having a chronic illness. Associations between pandemic worry, vaccination intention, and HBM were ascertained using correlation and mediation analyses. Individuals with chronic illness reported a higher level of pandemic worry, higher levels of perceived threat, greater benefits from vaccination, had lower self-efficacy and bought more medicine and sanitary/hygienic products. No significant differences were observed regarding vaccination intention, barriers against vaccination, and changes in food buying behavior. We found that the relationship between pandemic worry and vaccination intention was partially mediated by the perceived threat of disease and the benefits of vaccination. Pandemic worry predicted vaccination intention directly but also through the contribution of the perceived threat of disease and the benefits of vaccination. These findings suggest that presenting evidence of COVID-19 vaccine efficacy and the benefits of having the vaccine (especially for vulnerable groups, such as chronic illness patients) will encourage the population to follow vaccination recommendations.
Religion, Social Connectedness, and Xenophobic Responses to Ebola
Authors: Chuang Roxie , Eom Kimin , Kim Heejung S.
Published: July 2021

This study examined the role of religion in xenophobic responses to the threat of Ebola. Religious communities often offer members strong social ties and social support, which may help members cope with psychological and physical threat, including global threats like Ebola. Our analysis of a nationally representative sample in the U.S. (N = 1,000) found that overall, the more vulnerable to Ebola people felt, the more they exhibited xenophobic responses, but this relationship was moderated by importance of religion. Those who perceived religion as more important in their lives exhibited weaker xenophobic reactions than those who perceived religion as less important. Furthermore, social connectedness measured by collectivism explained the moderating role of religion, suggesting that higher collectivism associated with religion served as a psychological buffer. Religious people showed attenuated threat responses because they had a stronger social system that may offer resources for its members to cope with psychological and physical threats. The current research highlights that different cultural groups react to increased threats in divergent ways.
Beyond the Educational Context: Relevance of Intrinsic Reading Motivation During COVID-19 Confinement in Spain
Authors: De Sixte Raquel , Fajardo Inmaculada , Mañá Amelia , Jáñez Álvaro , Ramos Marta , García-Serrano María , Natalizi Federica , Arfé Barbara , Rosales Javier
Published: July 2021

What role could have intrinsic motivation toward reading in an extraordinary situation like the recent confinement? This research examines the relationship between intrinsic reading motivation (IRM) and reading habits in an adult population considering types of reading (for leisure, work/study, social networks, and news), gender, and distress generated by the coronavirus disease 2019 (COVID-19) pandemic. Participants were 3,849 adults from Spain who were surveyed about their reading practices: before, during the first weeks, and after several weeks of confinement. Linear mixed effects models (LMMs) were used to analyze data. Results showed a three-way interaction between reading frequency, IRM, and type of reading. Also, distress seems to pose a differential impact depending on the type of reading. The higher the IRM, the lesser the time devoted to study/work reading and the more to social and news reading (at the beginning of confinement). In this sense, IRM can function as a protective factor of reading behavior but only for leisure reading. Results support previous findings of the importance of consciously promoting this type of motivation in all individuals beyond educational contexts, since it seems to be positively related to well-being. Other results and implications are discussed.
Identifying Chemical Reactions and Their Associated Attributes in Patents
Authors: Mahendran Darshini , Gurdin Gabrielle , Lewinski Nastassja , Tang Christina , McInnes Bridget T.
Published: July 2021

Chemical patents are an essential source of information about novel chemicals and chemical reactions. However, with the increasing volume of such patents, mining information about these chemicals and chemical reactions has become a time-intensive and laborious endeavor. In this study, we present a system to extract chemical reaction events from patents automatically. Our approach consists of two steps: 1) named entity recognition (NER)—the automatic identification of chemical reaction parameters from the corresponding text, and 2) event extraction (EE)—the automatic classifying and linking of entities based on their relationships to each other. For our NER system, we evaluate bidirectional long short-term memory (BiLSTM)-based and bidirectional encoder representations from transformer (BERT)-based methods. For our EE system, we evaluate BERT-based, convolutional neural network (CNN)-based, and rule-based methods. We evaluate our NER and EE components independently and as an end-to-end system, reporting the precision, recall, andF1score. Our results show that the BiLSTM-based method performed best at identifying the entities, and the CNN-based method performed best at extracting events.
Comparative Analysis of the Fecal Bacterial Microbiota of Wintering Whooper Swans (Cygnus Cygnus)
Authors: Wang Wenxia , Huang Songlin , Yang Liangliang , Zhang Guogang
Published: July 2021

There are many and diverse intestinal microbiota, and they are closely related to various physiological functions of the body. They directly participate in the host's food digestion, nutrient absorption, energy metabolism, immune response, and many other physiological activities and are also related to the occurrence of many diseases. The intestinal microbiota are extremely important for maintaining normal physical health. In order to explore the composition and differences of the intestinal microbiota of whooper swans in different wintering areas, we collected fecal samples of whooper swans in Sanmenxia, Henan, and Rongcheng, Shandong, and we used the Illumina HiSeq platform to perform high-throughput sequencing of bacterial 16S rRNA genes. Comparison between Sanmenxia and Rongcheng showed no significant differences in ACE, Chao 1, Simpson, and Shannon indices (p > 0.05). Beta diversity results showed significant differences in bacterial communities between two groups [analysis of similarity (ANOSIM): R = 0.80, p = 0.011]. Linear discriminant analysis effect size (LEfSe) analysis showed that at the phylum level, the relative abundance of Actinobacteria was significantly higher in Sanmenxia whooper swans than Rongcheng whooper swans. At the genus level, the amount of Psychrobacter and Carnobacterium in Sanmenxia was significantly higher in Rongcheng, while the relative abundance Catellicoccus and Lactobacillus was significantly higher in Rongcheng than in Sanmenxia. This study analyzed the composition, characteristics, and differences of the intestinal microbiota of the whooper swans in different wintering environments and provided theoretical support for further exploring the relationship between the intestinal microbiota of the whooper swans and the external environment. And it played an important role in the overwintering physiology and ecology, population management, and epidemic prevention and control of whooper swans.
Associations among Mammary Ultrasound Measurements, Milk Yield of Non-Dairy Ewe Lambs and the Growth of Their Single Lambs
Authors: Haslin Emmanuelle , Corner-Thomas Rene A. , Kenyon Paul R. , Peterson Sam W. , Morris Stephen T. , Blair Hugh T.
Published: July 2021

Mammary cistern size was positively correlated with milk yield of mature dairy ewes, but the association in ewe lambs is unknown. This experiment aimed to examine the associations between mammary ultrasound measurements and the milk yield of ewe lambs at one year of age and to determine the accuracy of using maternal mammary ultrasound to predict single lamb growth rates. Single-bearing ewe lambs (n = 45) were randomly selected and 30 were milked once at weeks three (W3), five (W5), and seven (W7) of lactation. Mammary ultrasound scans were performed at day 110 of pregnancy, W3, W5, W7, and weaning (L69). Single lambs (n = 30) were weighed at birth and at each mammary scanning event. Udder measurements explained 26.8%, 21.4%, and 38.4% of the variation in milk yield at W3, W5 and W7, respectively, and 63.5% and 36.4% of the variation in single lamb growth to W3 and to L69. This ultrasound technique was more accurate in predicting single lamb growth to W3 than milk yield and may enable the identification of pregnant ewe lambs whose progeny would have greater growth rates. More research is needed to identify accurate indicators of superior milk yield and determine whether ultrasound could be used to select ewe lambs.
Prediction of Hanwoo Cattle Phenotypes from Genotypes Using Machine Learning Methods
Authors: Srivastava Swati , Lopez Bryan Irvine , Kumar Himansu , Jang Myoungjin , Chai Han-Ha , Park Woncheoul , Park Jong-Eun , Lim Dajeong
Published: July 2021

Hanwoo was originally raised for draft purposes, but the increase in local demand for red meat turned that purpose into full-scale meat-type cattle rearing; it is now considered one of the most economically important species and a vital food source for Koreans. The application of genomic selection in Hanwoo breeding programs in recent years was expected to lead to higher genetic progress. However, better statistical methods that can improve the genomic prediction accuracy are required. Hence, this study aimed to compare the predictive performance of three machine learning methods, namely, random forest (RF), extreme gradient boosting method (XGB), and support vector machine (SVM), when predicting the carcass weight (CWT), marbling score (MS), backfat thickness (BFT) and eye muscle area (EMA). Phenotypic and genotypic data (53,866 SNPs) from 7324 commercial Hanwoo cattle that were slaughtered at the age of around 30 months were used. The results showed that the boosting method XGB showed the highest predictive correlation for CWT and MS, followed by GBLUP, SVM, and RF. Meanwhile, the best predictive correlation for BFT and EMA was delivered by GBLUP, followed by SVM, RF, and XGB. Although XGB presented the highest predictive correlations for some traits, we did not find an advantage of XGB or any machine learning methods over GBLUP according to the mean squared error of prediction. Thus, we still recommend the use of GBLUP in the prediction of genomic breeding values for carcass traits in Hanwoo cattle.
Effects of Washing Solution, Washing Time, and Solid-Solution Rate on the Maximum Heavy Metals Removal Efficiency
Authors: Kim Min-Suk , Koo Namin , Kim Jeong-Gyu , Lee Sang-Hwan
Published: July 2021

In Korea, for heavy metal-contaminated soil, there are insufficient basic data as well as field application cases for soil washing. This study was conducted to suggest the significant factors and optimal operation conditions for the maximum heavy metal removal efficiency. Five types of washing solution [acid solution (HCl), citric acid, oxalic acid, EDTA, and CaCl2], washing time (10–360 min), and solid-solution ratio (1:2–1:100) were selected as significant operational factors. Non-observed effect concentration (NOEC) and central composite rotatable design (CCRD) were applied to derive the optimal conditions. The soil pH was slightly alkali, and it was highly contaminated by Cd (17.34 mg kg−1), Cu (307.76 mg kg−1), Pb (714.78 mg kg−1), and Zn (1755.47 mg kg−1), complexly. For all heavy metals, CaCl2, a neutral salt, was difficult to achieve the remediation goal. On the other hand, Cd, Cu, and Pb were removed successfully from the soil by acid solution, citric acid, oxalic acid, and EDTA. For Zn, only acid solution and oxalic acid could meet the remediation goal (300 mg kg−1). As the washing time increased, the heavy metal removal efficiency showed a tendency to increase overall. Especially, oxalic acid and acid solution were able to reach the highest efficiency point within 30 min, whereas citric acid and EDTA took 2 to 4 h at the longest. In the case of 1 M citric acid, through the CCRD experiment, optimal operation conditions (solid-solution ratio and washing time) could be deduced for each heavy metal. Furthermore, this series of processes can be utilized as a useful tool to find the optimal operating conditions and, at the same time, achieve the remediation goal.
3D-Printed Teeth with Multicolored Layers as a Tool for Evaluating Cavity Preparation by Dental Students
Authors: Lugassy Diva , Awad Mohamed , Shely Asaf , Davidovitch Moshe , Pilo Raphael , Brosh Tamar
Published: July 2021

Accurate assessment of dental student performance during preclinical operative mannequin courses is an essential milestone within the educational process. Training on novel, multicolored 3D-printed teeth resulted in higher performances of the students in comparison to training on standard, monochromatic plastic teeth. However, low reliability of students’ grading using standard, monochromatic plastic teeth was reported. The aim of this study was to verify whether the use of 3D multicolored teeth can (1) provide better inter- and intra-examiner reliability, and (2) assess the effect of instructors’ experience on their reliability. The novel tooth analogs consisted of digitally planned and 3D-printed plastic teeth containing green, yellow, and red stratifications according to increasing depths of preparation. Thirty-seven dental students performed three Class I preparations on the 3D-printed teeth, and these underwent blind evaluation by two examiners of varied experience at two timepoints. The data were compared with preparations done on conventional (monochromatic) plastic teeth. Results indicated excellent inter-examiner reliability on 3D-printed teeth (0.768 < ICC < 0.929), but only moderate reliability with conventional plastic teeth (0.314 < ICC < 0.672). The examiner having more experience was found to show higher intra-examiner reliability (ICC = 0.716 and 0.612 using 3D-printed teeth and conventional teeth, respectively) than the less experienced examiner (ICC = 0.481 and 0.095 using 3D-printed teeth and conventional teeth, respectively). The novel, multicolored 3D-printed teeth can provide more objective evaluation of cavity preparation compared with conventional plastic teeth.
Inflammation and Cell Death of the Innate and Adaptive Immune System during Sepsis
Authors: Nedeva Christina
Published: July 2021

Sepsis is a life-threatening medical condition that occurs when the host has an uncontrolled or abnormal immune response to overwhelming infection. It is now widely accepted that sepsis occurs in two concurrent phases, which consist of an initial immune activation phase followed by a chronic immunosuppressive phase, leading to immune cell death. Depending on the severity of the disease and the pathogen involved, the hosts immune system may not fully recover, leading to ongoing complications proceeding the initial infection. As such, sepsis remains one of the leading causes of morbidity and mortality world-wide, with treatment options limited to general treatment in intensive care units (ICU). Lack of specific treatments available for sepsis is mostly due to our limited knowledge of the immuno-physiology associated with the disease. This review will provide a comprehensive overview of the mechanisms and cell types involved in eliciting infection-induced immune activation from both the innate and adaptive immune system during sepsis. In addition, the mechanisms leading to immune cell death following hyperactivation of immune cells will be explored. The evaluation and better understanding of the cellular and systemic responses leading to disease onset could eventuate into the development of much needed therapies to combat this unrelenting disease.
Characterization of Early Life Stress-Affected Gut Microbiota
Authors: Usui Noriyoshi , Matsuzaki Hideo , Shimada Shoichi
Published: July 2021

Early life stress (ELS), such as neglect and maltreatment, exhibits a strong impact on the mental and brain development of children. However, it is not fully understood how ELS affects the body and behavior of children. Therefore, in this study, we performed social isolation on weaned pre-adolescent mice and investigated how ELS could affect gut microbiota and mouse behavior. Using the metagenomics approach, we detected an overall ELS-related change in the gut microbiota and identified Bacteroidales and Clostridiales as significantly altered bacterial groups. These metagenomic alterations impaired social behavior in ELS mice, which also correlated with the abundance of Bacteroidales and Clostridiales. Our results demonstrate that ELS alters the gut microbiota and reduces social behavior in adolescent mice.