bluuebunny/crossref_metadata_2025 huggingface dataset:
Supplementary Figures from Gain of HIF1 Activity and Loss of miRNA let-7d Promote Breast Cancer Metastasis to the Brain via the PDGF/PDGFR Axis
Authors: Wyss Christof B. , Duffey Nathalie , Peyvandi Sanam , Barras David , Martinez Usatorre Amaïa , Coquoz Oriana , Romero Pedro , Delorenzi Mauro , Lorusso Girieca , Rüegg Curzio
Published: March 2023

This file contains 6 supplementary figures and figure legends.
Supplementary Document S1 from MRI Distinguishes Tumor Hypoxia Levels of Different Prognostic and Biological Significance in Cervical Cancer
Authors: Hillestad Tiril , Hompland Tord , Fjeldbo Christina S. , Skingen Vilde E. , Salberg Unn Beate , Aarnes Eva-Katrine , Nilsen Anja , Lund Kjersti V. , Evensen Tina S. , Kristensen Gunnar B. , Stokke Trond , Lyng Heidi
Published: March 2023

Validation of algorithm for assessing hypoxia levels in patient tumors
Supplemental Table ST5 from Linking Transcriptomic and Imaging Data Defines Features of a Favorable Tumor Immune Microenvironment and Identifies a Combination Biomarker for Primary Melanoma
Authors: Gartrell-Corrado Robyn D. , Chen Andrew X. , Rizk Emanuelle M. , Marks Douglas K. , Bogardus Margaret H. , Hart Thomas D. , Silverman Andrew M. , Bayan Claire-Audrey Y. , Finkel Grace G. , Barker Luke W. , Komatsubara Kimberly M. , Carvajal Richard D. , Horst Basil A. , Chang Rui , Monod Anthea , Rabadan Raul , Saenger Yvonne M.
Published: March 2023

Univariable Cox regression analysis.
Supplemental Figure S2 from Linking Transcriptomic and Imaging Data Defines Features of a Favorable Tumor Immune Microenvironment and Identifies a Combination Biomarker for Primary Melanoma
Authors: Gartrell-Corrado Robyn D. , Chen Andrew X. , Rizk Emanuelle M. , Marks Douglas K. , Bogardus Margaret H. , Hart Thomas D. , Silverman Andrew M. , Bayan Claire-Audrey Y. , Finkel Grace G. , Barker Luke W. , Komatsubara Kimberly M. , Carvajal Richard D. , Horst Basil A. , Chang Rui , Monod Anthea , Rabadan Raul , Saenger Yvonne M.
Published: March 2023

Cell clustering relates to gene expression. Spearman correlation of PCF AUC values from the tumor-CTL and tumor-macrophage HLA-DR+ interactions, compared with gene expression values. Statistical analysis performed using Fisher transformation with Bonferroni correction.
Supplementary Figures from FTO-Dependent N6-Methyladenosine Modifications Inhibit Ovarian Cancer Stem Cell Self-Renewal by Blocking cAMP Signaling
Authors: Huang Hao , Wang Yinu , Kandpal Manoj , Zhao Guangyuan , Cardenas Horacio , Ji Yanrong , Chaparala Anusha , Tanner Edward J. , Chen Jianjun , Davuluri Ramana V. , Matei Daniela
Published: March 2023

Additional experimental results supporting the main figures are included. Figure S1. Expression of key RNA methylation regulators in OC; Figure S2. Flow cytometry analysis for ALDH and CD133 in single cell suspensions derived from human ovarian tumors; Figure S3. FTO overexpression in OC cells; Figure S4. FTO overexpression decreases spheroid formation ability of OC cells dissociated from xenografts; Figure S5. m6A activity and tumor initiation capacity; Figure S6. Gene sets enriched in FTO vs. control OC cells; Figure S7. Expression of PDE4B and PDE1C in FTO overexpressed OC cells; Figure S8. The Genome Browser visualizes the predicted motif binding sites for proteins (IGF2BP2 and IGF2BP3) on the input sequence; Figure S9. Effects of phosphodiesterase inhibitors on stemness features are dependent on FTO; Figure S10. Quality control for RNA-seq; Figure S11. Quality control for MeRIP-seq
Figure S4 from Intratumoral Copper Modulates PD-L1 Expression and Influences Tumor Immune Evasion
Authors: Voli Florida , Valli Emanuele , Lerra Luigi , Kimpton Kathleen , Saletta Federica , Giorgi Federico M. , Mercatelli Daniele , Rouaen Jourdin R.C. , Shen Sylvie , Murray Jayne E. , Ahmed-Cox Aria , Cirillo Giuseppe , Mayoh Chelsea , Beavis Paul A. , Haber Michelle , Trapani Joseph A. , Kavallaris Maria , Vittorio Orazio
Published: March 2023

TEPA increases tumor-infiltrating immune cells in Th-MYCN mice
Figure S1 from Intratumoral Copper Modulates PD-L1 Expression and Influences Tumor Immune Evasion
Authors: Voli Florida , Valli Emanuele , Lerra Luigi , Kimpton Kathleen , Saletta Federica , Giorgi Federico M. , Mercatelli Daniele , Rouaen Jourdin R.C. , Shen Sylvie , Murray Jayne E. , Ahmed-Cox Aria , Cirillo Giuseppe , Mayoh Chelsea , Beavis Paul A. , Haber Michelle , Trapani Joseph A. , Kavallaris Maria , Vittorio Orazio
Published: March 2023

Co-expression plots of VST-normalized gene expression profiles derived from TCGA datasets for PD-L1 and four copper-responsive genes
Supplementary Data from The Functional Landscape of Patient-Derived RNF43 Mutations Predicts Sensitivity to Wnt Inhibition
Authors: Yu Jia , Yusoff Permeen A. Mohamed , Woutersen Daniëlle T.J. , Goh Pamela , Harmston Nathan , Smits Ron , Epstein David M. , Virshup David M. , Madan Babita
Published: March 2023

Supplementary Methods, Figures and Tables.
Supplementary Materials and Methods from Slow-Cycling Cancer Stem Cells Regulate Progression and Chemoresistance in Colon Cancer
Authors: Shiokawa Daisuke , Sakai Hiroaki , Ohata Hirokazu , Miyazaki Toshiaki , Kanda Yusuke , Sekine Shigeki , Narushima Daichi , Hosokawa Masahito , Kato Mamoru , Suzuki Yutaka , Takeyama Haruko , Kambara Hideki , Nakagama Hitoshi , Okamoto Koji
Published: March 2023

Supplementary Materials and Methods
Supplementary Table 3 from Cellular and Genetic Determinants of the Sensitivity of Cancer to α-Particle Irradiation
Authors: Yard Brian D. , Gopal Priyanka , Bannik Kristina , Siemeister Gerhard , Hagemann Urs B. , Abazeed Mohamed E.
Published: March 2023

SCNA and survival after irradiation.
Supplementary Table 2 from Cellular and Genetic Determinants of the Sensitivity of Cancer to α-Particle Irradiation
Authors: Yard Brian D. , Gopal Priyanka , Bannik Kristina , Siemeister Gerhard , Hagemann Urs B. , Abazeed Mohamed E.
Published: March 2023

ssGSEA and survival after irradiation.
Supplementary Figure 4 from Cellular and Genetic Determinants of the Sensitivity of Cancer to α-Particle Irradiation
Authors: Yard Brian D. , Gopal Priyanka , Bannik Kristina , Siemeister Gerhard , Hagemann Urs B. , Abazeed Mohamed E.
Published: March 2023

Cellular morphometry affects survival after alpha-particle irradiation.
Supplementary Figure 2 from Cellular and Genetic Determinants of the Sensitivity of Cancer to α-Particle Irradiation
Authors: Yard Brian D. , Gopal Priyanka , Bannik Kristina , Siemeister Gerhard , Hagemann Urs B. , Abazeed Mohamed E.
Published: March 2023

Longer doubling times in cells most resistant to alpha-particle irradiation.
Supplementary Data from Hes1 Is Essential in Proliferating Ductal Cell–Mediated Development of Intrahepatic Cholangiocarcinoma
Authors: Matsumori Tomoaki , Kodama Yuzo , Takai Atsushi , Shiokawa Masahiro , Nishikawa Yoshihiro , Matsumoto Tomonori , Takeda Haruhiko , Marui Saiko , Okada Hirokazu , Hirano Tomonori , Kuwada Takeshi , Sogabe Yuko , Kakiuchi Nobuyuki , Tomono Teruko , Mima Atsushi , Morita Toshihiro , Ueda Tatsuki , Tsuda Motoyuki , Yamauchi Yuki , Kuriyama Katsutoshi , Sakuma Yojiro , Ota Yuji , Maruno Takahisa , Uza Norimitsu , Marusawa Hiroyuki , Kageyama Ryoichiro , Chiba Tsutomu , Seno Hiroshi
Published: March 2023

Supplemental Data
Supplementary Table 1 from Epigenetic Inactivation of α-Internexin Accelerates Microtubule Polymerization in Colorectal Cancer
Authors: Li Yingjie , Bai Liangliang , Yu Huichuan , Cai Du , Wang Xiaolin , Huang Baoyuan , Peng Shaoyong , Huang Meijin , Cao Guangwen , Kaz Andrew M. , Grady William M. , Wang Jianping , Luo Yanxin
Published: March 2023

Table S1. The distribution and calculated pI of peptides in the peptide arrays
Fig. S2 from Hes1 Is Essential in Proliferating Ductal Cell–Mediated Development of Intrahepatic Cholangiocarcinoma
Authors: Matsumori Tomoaki , Kodama Yuzo , Takai Atsushi , Shiokawa Masahiro , Nishikawa Yoshihiro , Matsumoto Tomonori , Takeda Haruhiko , Marui Saiko , Okada Hirokazu , Hirano Tomonori , Kuwada Takeshi , Sogabe Yuko , Kakiuchi Nobuyuki , Tomono Teruko , Mima Atsushi , Morita Toshihiro , Ueda Tatsuki , Tsuda Motoyuki , Yamauchi Yuki , Kuriyama Katsutoshi , Sakuma Yojiro , Ota Yuji , Maruno Takahisa , Uza Norimitsu , Marusawa Hiroyuki , Kageyama Ryoichiro , Chiba Tsutomu , Seno Hiroshi
Published: March 2023

Analyzes of AlbcreK; Hes1WT/WT, AlbcreK; Hes1flox/flox, AlbcreKP; Hes1WT/WT, and AlbcreKP; Hes1flox/flox mice.
Supplementary Movie 1 from The Amino-Terminal Oligomerization Domain of Angiopoietin-2 Affects Vascular Remodeling, Mammary Gland Tumor Growth, and Lung Metastasis in Mice
Authors: Kapiainen Emmi , Kihlström Minna K. , Pietilä Riikka , Kaakinen Mika , Ronkainen Veli-Pekka , Tu Hongmin , Heikkinen Anne , Devarajan Raman , Miinalainen Ilkka , Laitakari Anna , Ansarizadeh Mohammadhassan , Zhang Qin , Wei Gong-Hong , Ruddock Lloyd , Pihlajaniemi Taina , Elamaa Harri , Eklund Lauri
Published: March 2023

Visualization of basal cell surface of GFP-HUVECs
Supplemental Figure 5 from Palmitoylated Proteins on AML-Derived Extracellular Vesicles Promote Myeloid-Derived Suppressor Cell Differentiation via TLR2/Akt/mTOR Signaling
Authors: Tohumeken Sehmus , Baur Rebecca , Böttcher Martin , Stoll Andrej , Loschinski Romy , Panagiotidis Konstantinos , Braun Martina , Saul Domenica , Völkl Simon , Baur Andreas S. , Bruns Heiko , Mackensen Andreas , Jitschin Regina , Mougiakakos Dimitrios
Published: March 2023

(A) Impact of anti-TLR4 antibodies on MDSC induction, (B) Impact of anti-TLR2 antibodies on pCREB activation, (C) Impact of PrK pre-treatment of AML-EV uptake, (D) Impact of chemotherapy on protein palmitoylation in AML-cells, and (E) Impact of 2-BP on EV release by AML-cells.
Supplementary Table 2 from Loss of ARID1A Promotes Epithelial–Mesenchymal Transition and Sensitizes Pancreatic Tumors to Proteotoxic Stress
Authors: Tomihara Hideo , Carbone Federica , Perelli Luigi , Huang Justin K. , Soeung Melinda , Rose Johnathon L. , Robinson Frederick S. , Lissanu Deribe Yonathan , Feng Ningping , Takeda Mitsunobu , Inoue Akira , Poggetto Edoardo Del , Deem Angela K. , Maitra Anirban , Msaouel Pavlos , Tannir Nizar M. , Draetta Giulio F. , Viale Andrea , Heffernan Timothy P. , Bristow Christopher A. , Carugo Alessandro , Genovese Giannicola
Published: March 2023

GSEA analysis
Supplementary Information from Inhibition of Histone H3K27 Demethylases Inactivates Brachyury (TBXT) and Promotes Chordoma Cell Death
Authors: Cottone Lucia , Cribbs Adam P. , Khandelwal Garima , Wells Graham , Ligammari Lorena , Philpott Martin , Tumber Anthony , Lombard Patrick , Hookway Edward S. , Szommer Tamas , Johansson Catrine , Brennan Paul E. , Pillay Nischalan , Jenner Richard G. , Oppermann Udo , Flanagan Adrienne M.
Published: March 2023

Supplementary Information
Dataset S1 from Inhibition of Histone H3K27 Demethylases Inactivates Brachyury (TBXT) and Promotes Chordoma Cell Death
Authors: Cottone Lucia , Cribbs Adam P. , Khandelwal Garima , Wells Graham , Ligammari Lorena , Philpott Martin , Tumber Anthony , Lombard Patrick , Hookway Edward S. , Szommer Tamas , Johansson Catrine , Brennan Paul E. , Pillay Nischalan , Jenner Richard G. , Oppermann Udo , Flanagan Adrienne M.
Published: March 2023

Compounds_Library_screen data
Supplementary Data from A Hyperactive RelA/p65-Hexokinase 2 Signaling Axis Drives Primary Central Nervous System Lymphoma
Authors: Tateishi Kensuke , Miyake Yohei , Kawazu Masahito , Sasaki Nobuyoshi , Nakamura Taishi , Sasame Jo , Yoshii Yukie , Ueno Toshihide , Miyake Akio , Watanabe Jun , Matsushita Yuko , Shiba Norio , Udaka Naoko , Ohki Kentaro , Fink Alexandria L. , Tummala Shilpa S. , Natsumeda Manabu , Ikegaya Naoki , Nishi Mayuko , Ohtake Makoto , Miyazaki Ryohei , Suenaga Jun , Murata Hidetoshi , Aoki Ichio , Miller Julie J. , Fujii Yukihiko , Ryo Akihide , Yamanaka Shoji , Mano Hiroyuki , Cahill Daniel P. , Wakimoto Hiroaki , Chi Andrew S. , Batchelor Tracy T. , Nagane Motoo , Ichimura Koichi , Yamamoto Tetsuya
Published: March 2023

Supplementary document
Figure S2 from GSK3β-Mediated Expression of CUG-Translated WT1 Is Critical for Tumor Progression
Authors: Yoshitomi Hisae , Lee Kun Y. , Yao Ke , Shin Seung Ho , Zhang Tianshun , Wang Qiushi , Paul Souren , Roh Eunmiri , Ryu Joohyun , Chen Hanyong , Aziz Faisal , Chakraborty Abhijit , Bode Ann M. , Dong Zigang
Published: March 2023

A, colon and lung cell lysates were subjected to Western blotting with antibodies to detect phosphorylated WT1 (S64 or S68). B, immunofluorescence staining with WT1 phosphorylation antibodies of human colon and lung cancer tissue arrays, which included 9 cases of normal tissue, 23 cases of adjacent and 23 cases of cancer tissues. Results are shown as mean values {plus minus} S.D. (*p < 0.05, ** p < 0.01 by one-way ANOVA with Tukey's correction).
Figure S2 from STAT3-Mediated Astrocyte Reactivity Associated with Brain Metastasis Contributes to Neurovascular Dysfunction
Authors: Sarmiento Soto Manuel , Larkin James R. , Martin Chris , Khrapitchev Alexandre A. , Maczka Melissa , Economopoulos Vasiliki , Scott Helen , Escartin Carole , Bonvento Gilles , Serres Sébastien , Sibson Nicola R.
Published: March 2023

Additional info regarding the Lv-CNTF model
Figure S1 from GSK3β-Mediated Expression of CUG-Translated WT1 Is Critical for Tumor Progression
Authors: Yoshitomi Hisae , Lee Kun Y. , Yao Ke , Shin Seung Ho , Zhang Tianshun , Wang Qiushi , Paul Souren , Roh Eunmiri , Ryu Joohyun , Chen Hanyong , Aziz Faisal , Chakraborty Abhijit , Bode Ann M. , Dong Zigang
Published: March 2023

B6.129P2-Wt1tm1Hst/H mice were confirmed by genotyping. A, genotype and B, WT1 expression revealed by Western blotting of mouse embryos on day E8.5, C, colon tissue after treatment with AOM/DSS or D, lung tissue after treatment with urethane. Analysis with an antibody (6F-H2) to detect WT1. Results are shown for wild type (+/+), heterozygous (+/-) and homozygous (-/-) littermates. E, changes in body weight of AOM/DSS-treated mice and F, urethane-treated mice were compared between different genotyped groups. G, Kaplan-Meier survival curves for AOM/DSS-treated mice.
Supplementary Data from A Transcriptional Regulatory Loop of Master Regulator Transcription Factors, PPARG, and Fatty Acid Synthesis Promotes Esophageal Adenocarcinoma
Authors: Ma Sai , Zhou Bo , Yang Qian , Pan Yunzhi , Yang Wei , Freedland Stephen J. , Ding Ling-Wen , Freeman Michael R. , Breunig Joshua J. , Bhowmick Neil A. , Pan Jian , Koeffler H. Phillip , Lin De-Chen
Published: March 2023

Supplementary Figure S1-S12
Supplementary Tab 4 from Cyclophosphamide and Vinorelbine Activate Stem-Like CD8+ T Cells and Improve Anti-PD-1 Efficacy in Triple-Negative Breast Cancer
Authors: Falvo Paolo , Orecchioni Stefania , Hillje Roman , Raveane Alessandro , Mancuso Patrizia , Camisaschi Chiara , Luzi Lucilla , Pelicci PierGiuseppe , Bertolini Francesco
Published: March 2023

Suppl Tab 4
Supplementary Tab 2 from Cyclophosphamide and Vinorelbine Activate Stem-Like CD8+ T Cells and Improve Anti-PD-1 Efficacy in Triple-Negative Breast Cancer
Authors: Falvo Paolo , Orecchioni Stefania , Hillje Roman , Raveane Alessandro , Mancuso Patrizia , Camisaschi Chiara , Luzi Lucilla , Pelicci PierGiuseppe , Bertolini Francesco
Published: March 2023

Suppl Tab 2
Supplementary information from Unconventional Secretion of PKCδ Exerts Tumorigenic Function via Stimulation of ERK1/2 Signaling in Liver Cancer
Authors: Yamada Kohji , Oikawa Tsunekazu , Kizawa Ryusuke , Motohashi Saya , Yoshida Saishu , Kumamoto Tomotaka , Saeki Chisato , Nakagawa Chika , Shimoyama Yuya , Aoki Katsuhiko , Tachibana Toshiaki , Saruta Masayuki , Ono Masaya , Yoshida Kiyotsugu
Published: March 2023

Supplementary Materials and Methods Supplementary References Figures S1 to S9 Table S1
Supplementary Table 1 from CKAP2L Promotes Non–Small Cell Lung Cancer Progression through Regulation of Transcription Elongation
Authors: Monteverde Tiziana , Sahoo Sudhakar , La Montagna Manuela , Magee Peter , Shi Lei , Lee Dave , Sellers Robert , Baker Alexander R. , Leong Hui Sun , Fassan Matteo , Garofalo Michela
Published: March 2023

List of all primers used in the study
Supplementary Data from Survivin Expression Is Differentially Regulated by a Selective Cross-talk between RBM38 and miRNAs let-7b or miR-203a
Authors: Lucchesi Christopher A. , Zhang Jin , Ma Buyong , Nussinov Ruth , Chen Xinbin
Published: March 2023

Supplementary figures.
Supplementary Data from Dual Covalent Inhibition of PKM and IMPDH Targets Metabolism in Cutaneous Metastatic Melanoma
Authors: Zerhouni Marwa , Martin Anthony R. , Furstoss Nathan , Gutierrez Vincent S. , Jaune Emilie , Tekaya Nedra , Beranger Guillaume E. , Abbe Patricia , Regazzetti Claire , Amdouni Hella , Driowya Mohsine , Dubreuil Patrice , Luciano Frédéric , Jacquel Arnaud , Tulic Meri K. , Cluzeau Thomas , O'Hara Brendan P. , Ben-Sahra Issam , Passeron Thierry , Benhida Rachid , Robert Guillaume , Auberger Patrick , Rocchi Stéphane
Published: March 2023

Supplemental Material
Figure S7 from Dual Covalent Inhibition of PKM and IMPDH Targets Metabolism in Cutaneous Metastatic Melanoma
Authors: Zerhouni Marwa , Martin Anthony R. , Furstoss Nathan , Gutierrez Vincent S. , Jaune Emilie , Tekaya Nedra , Beranger Guillaume E. , Abbe Patricia , Regazzetti Claire , Amdouni Hella , Driowya Mohsine , Dubreuil Patrice , Luciano Frédéric , Jacquel Arnaud , Tulic Meri K. , Cluzeau Thomas , O'Hara Brendan P. , Ben-Sahra Issam , Passeron Thierry , Benhida Rachid , Robert Guillaume , Auberger Patrick , Rocchi Stéphane
Published: March 2023

Supplemental Figure 7
Figure S2 from Altering the Microbiome Inhibits Tumorigenesis in a Mouse Model of Oviductal High-Grade Serous Carcinoma
Authors: Chen Lixing , Zhai Yali , Wang Yisheng , Fearon Eric R. , Núñez Gabriel , Inohara Naohiro , Cho Kathleen R.
Published: March 2023

OTU richness, bacterial copy numbers, and Shannon evenness index of fecal and vaginal microbiota during cancer development
Supplementary table 3 from Nonsense-Mediated RNA Decay Is a Unique Vulnerability of Cancer Cells Harboring SF3B1 or U2AF1 Mutations
Authors: Cheruiyot Abigael , Li Shan , Nonavinkere Srivatsan Sridhar , Ahmed Tanzir , Chen Yuhao , Lemacon Delphine S. , Li Ying , Yang Zheng , Wadugu Brian A. , Warner Wayne A. , Pruett-Miller Shondra M. , Obeng Esther A. , Link Daniel C. , He Dalin , Xiao Fei , Wang Xiaowei , Bailis Julie M. , Walter Matthew J. , You Zhongsheng
Published: March 2023

Supplementary table 3
cohort_primary from Sleeping Beauty Transposon Mutagenesis Identifies Genes Driving the Initiation and Metastasis of Uterine Leiomyosarcoma
Authors: Kodama Michiko , Shimura Hiroko , Tien Jean C. , Newberg Justin Y. , Kodama Takahiro , Wei Zhubo , Rangel Roberto , Yoshihara Kosuke , Kuruma Airi , Nakae Aya , Hashimoto Kae , Sawada Kenjiro , Kimura Tadashi , Jenkins Nancy A. , Copeland Neal G.
Published: March 2023

bed file
Supplementary Table S7 from YTHDF1 Promotes Gastric Carcinogenesis by Controlling Translation of FZD7
Authors: Pi Jingnan , Wang Wen , Ji Ming , Wang Xiaoshuang , Wei Xueju , Jin Jing , Liu Tao , Qiang Jiaqi , Qi Zhihong , Li Feng , Liu Yue , Ma Yanni , Si Yanmin , Huo Yue , Gao Yufeng , Chen Yiying , Dong Lei , Su Rui , Chen Jianjun , Rao Shuan , Yi Ping , Yu Shuyang , Wang Fang , Yu Jia
Published: March 2023

Identification of YTHDF1-regulated transcripts by RNA-seq, RIP-seq and MeRIP-seq. Related to Figure 3. This file contains six tabs: 1, RNA profiling revealed transcripts that were dysregulated upon YTHDF1 deficiency. 2, YTHDF1-binding genes revealed by RIP-seq within MGC-803 cells. 3, m6A peaks revealed by m6A-seq within MGC-803 cells. 4, The overlap of transcripts identified by YTHDF1 specific RIP-seq and MeRIP-seq. 5, The overlap of transcripts were enriched in Wnt and Hippo signaling pathways. 6, YTHDF1 candidate targets in the Hippo or Wnt pathways.
Supplementary Figure S4 from YTHDF1 Promotes Gastric Carcinogenesis by Controlling Translation of FZD7
Authors: Pi Jingnan , Wang Wen , Ji Ming , Wang Xiaoshuang , Wei Xueju , Jin Jing , Liu Tao , Qiang Jiaqi , Qi Zhihong , Li Feng , Liu Yue , Ma Yanni , Si Yanmin , Huo Yue , Gao Yufeng , Chen Yiying , Dong Lei , Su Rui , Chen Jianjun , Rao Shuan , Yi Ping , Yu Shuyang , Wang Fang , Yu Jia
Published: March 2023

Schematic depiction of wild-type (YTHDF1-WT) and mutant (YTHDF1-MUT) YTHDF1 constructs.
Supplementary Table from PBRM1 Deficiency Confers Synthetic Lethality to DNA Repair Inhibitors in Cancer
Authors: Chabanon Roman M. , Morel Daphné , Eychenne Thomas , Colmet-Daage Léo , Bajrami Ilirjana , Dorvault Nicolas , Garrido Marlène , Meisenberg Cornelia , Lamb Andrew , Ngo Carine , Hopkins Suzanna R. , Roumeliotis Theodoros I. , Jouny Samuel , Hénon Clémence , Kawai-Kawachi Asuka , Astier Clémence , Konde Asha , Del Nery Elaine , Massard Christophe , Pettitt Stephen J. , Margueron Raphaël , Choudhary Jyoti S. , Almouzni Geneviève , Soria Jean-Charles , Deutsch Eric , Downs Jessica A. , Lord Christopher J. , Postel-Vinay Sophie
Published: March 2023

Supplementary Table from PBRM1 Deficiency Confers Synthetic Lethality to DNA Repair Inhibitors in Cancer
Table S1 from Circ0008399 Interaction with WTAP Promotes Assembly and Activity of the m6A Methyltransferase Complex and Promotes Cisplatin Resistance in Bladder Cancer
Authors: Wei Wenjie , Sun Jiayin , Zhang Hui , Xiao Xingyuan , Huang Chao , Wang Liang , Zhong He , Jiang Yangkai , Zhang Xiaoping , Jiang Guosong
Published: March 2023

The sequences of primers, oligonucleotides and probes used in this study.
Supplementary Methods from Acquired RAD51C Promoter Methylation Loss Causes PARP Inhibitor Resistance in High-Grade Serous Ovarian Carcinoma
Authors: Nesic Ksenija , Kondrashova Olga , Hurley Rachel M. , McGehee Cordelia D. , Vandenberg Cassandra J. , Ho Gwo-Yaw , Lieschke Elizabeth , Dall Genevieve , Bound Nirashaa , Shield-Artin Kristy , Radke Marc , Musafer Ashan , Chai Zi Qing , Ghamsari Mohammad Reza Eftekhariyan , Harrell Maria I. , Kee Damien , Olesen Inger , McNally Orla , Traficante Nadia , Study Australian Ovarian Cancer , DeFazio Anna , Bowtell David D.L. , Swisher Elizabeth M. , Weroha S. John , Nones Katia , Waddell Nicola , Kaufmann Scott H. , Dobrovic Alexander , Wakefield Matthew J. , Scott Clare L.
Published: March 2023

All Supplementary Methods for the manuscript
Supplementary Data from Therapeutic Potential of Chemically Modified, Synthetic, Triplex Peptide Nucleic Acid–Based Oncomir Inhibitors for Cancer Therapy
Authors: Dhuri Karishma , Gaddam Ravinder Reddy , Vikram Ajit , Slack Frank J. , Bahal Raman
Published: March 2023

Supplementary data files
Supplementary Data from Genomic Alterations in PIK3CA-Mutated Breast Cancer Result in mTORC1 Activation and Limit the Sensitivity to PI3Kα Inhibitors
Authors: Cai Yanyan , Xu Guotai , Wu Fan , Michelini Flavia , Chan Carmen , Qu Xuan , Selenica Pier , Ladewig Erik , Castel Pau , Cheng Yuanming , Zhao Alison , Jhaveri Komal , Toska Eneda , Jimenez Marta , Jacquet Alexandra , Tran-Dien Alicia , Andre Fabrice , Chandarlapaty Sarat , Reis-Filho Jorge S. , Razavi Pedram , Scaltriti Maurizio
Published: March 2023

Supplem Figures
Figure S6 from T Cells Expanded from PD-1+ Peripheral Blood Lymphocytes Share More Clones with Paired Tumor-Infiltrating Lymphocytes
Authors: Li Tiepeng , Zhao Lingdi , Yang Yonghao , Wang Yao , Zhang Yong , Guo Jindong , Chen Guangyu , Qin Peng , Xu Benling , Ma Baozhen , Zhang Fang , Shang Yiman , Li Qingjun , Zhang Kai , Yuan Dongfeng , Feng Chaojie , Ma Yan , Liu Zhiyong , Tian Zhichao , Li Hongle , Wang Shengdian , Gao Quanli
Published: March 2023

Box plot shows the percentage of CD45RA-CD62L+, CD45RA- CD62L-, CD45RA+ CD62L+, and CD45RA+ CD62L- T cells in the subset of CD4+ (A and E, PD-1-T cells; B and F, PD-1+T cells )and CD8+ (C and G, PD-1-T cells; D and H, PD-1+T cells ) T cells before (Upper panel, n=4) and after (Lower panel, n=8) expansion with the protocol established in this study.
Supplementary Data from Genomic Alterations in PIK3CA-Mutated Breast Cancer Result in mTORC1 Activation and Limit the Sensitivity to PI3Kα Inhibitors
Authors: Cai Yanyan , Xu Guotai , Wu Fan , Michelini Flavia , Chan Carmen , Qu Xuan , Selenica Pier , Ladewig Erik , Castel Pau , Cheng Yuanming , Zhao Alison , Jhaveri Komal , Toska Eneda , Jimenez Marta , Jacquet Alexandra , Tran-Dien Alicia , Andre Fabrice , Chandarlapaty Sarat , Reis-Filho Jorge S. , Razavi Pedram , Scaltriti Maurizio
Published: March 2023

Supplemental Tables 1-4. Table S1. Sequences of sgRNAs and oligonucleotides; Table S2. GSEA pathway enrichment analysis of enriched and dropout genes in MCF7 and T47D cells; Table S3. The top 2.5% (3745) enriched sgRNAs of whole-genome CRISPR/Cas9 sgRNA knockout screen in MCF7 cells; Table S4. The top 2.5% (3745) enriched sgRNAs of whole-genome CRISPR/Cas9 sgRNA knockout screen in T47D cells.
Figure S5 from T Cells Expanded from PD-1+ Peripheral Blood Lymphocytes Share More Clones with Paired Tumor-Infiltrating Lymphocytes
Authors: Li Tiepeng , Zhao Lingdi , Yang Yonghao , Wang Yao , Zhang Yong , Guo Jindong , Chen Guangyu , Qin Peng , Xu Benling , Ma Baozhen , Zhang Fang , Shang Yiman , Li Qingjun , Zhang Kai , Yuan Dongfeng , Feng Chaojie , Ma Yan , Liu Zhiyong , Tian Zhichao , Li Hongle , Wang Shengdian , Gao Quanli
Published: March 2023

The compositions of the sorted PD-1- and PD-1+ fraction prior to expansion. Upper panel: PD-1 negative fraction; Lower panel: PD-1 positive fraction. (n=9)
Figure S4 from T Cells Expanded from PD-1+ Peripheral Blood Lymphocytes Share More Clones with Paired Tumor-Infiltrating Lymphocytes
Authors: Li Tiepeng , Zhao Lingdi , Yang Yonghao , Wang Yao , Zhang Yong , Guo Jindong , Chen Guangyu , Qin Peng , Xu Benling , Ma Baozhen , Zhang Fang , Shang Yiman , Li Qingjun , Zhang Kai , Yuan Dongfeng , Feng Chaojie , Ma Yan , Liu Zhiyong , Tian Zhichao , Li Hongle , Wang Shengdian , Gao Quanli
Published: March 2023

Information on previous treatment of patients included in the observational study.LTIL-04.
Figure S3 from T Cells Expanded from PD-1+ Peripheral Blood Lymphocytes Share More Clones with Paired Tumor-Infiltrating Lymphocytes
Authors: Li Tiepeng , Zhao Lingdi , Yang Yonghao , Wang Yao , Zhang Yong , Guo Jindong , Chen Guangyu , Qin Peng , Xu Benling , Ma Baozhen , Zhang Fang , Shang Yiman , Li Qingjun , Zhang Kai , Yuan Dongfeng , Feng Chaojie , Ma Yan , Liu Zhiyong , Tian Zhichao , Li Hongle , Wang Shengdian , Gao Quanli
Published: March 2023

Information on previous treatment of patients included in the observational study.LTIL-03.
Supplementary Table S1 from Stomatin-Mediated Inhibition of the Akt Signaling Axis Suppresses Tumor Growth
Authors: Rahman Nor Idayu A. , Sato Akira , Tsevelnorov Khurelbaatar , Shimizu Akio , Komeno Masahiro , Ahmat Amin Mohammad Khusni Bin , Molla Md Rasel , Soh Joanne Ern Chi , Nguyen Le Kim Chi , Wada Akinori , Kawauchi Akihiro , Ogita Hisakazu
Published: March 2023

Supplementary Table S1
Figure S1 from T Cells Expanded from PD-1+ Peripheral Blood Lymphocytes Share More Clones with Paired Tumor-Infiltrating Lymphocytes
Authors: Li Tiepeng , Zhao Lingdi , Yang Yonghao , Wang Yao , Zhang Yong , Guo Jindong , Chen Guangyu , Qin Peng , Xu Benling , Ma Baozhen , Zhang Fang , Shang Yiman , Li Qingjun , Zhang Kai , Yuan Dongfeng , Feng Chaojie , Ma Yan , Liu Zhiyong , Tian Zhichao , Li Hongle , Wang Shengdian , Gao Quanli
Published: March 2023

Information on previous treatment of patients included in the observational study.LTIL-01.
Supplementary Data from Dietary Fats High in Linoleic Acids Impair Antitumor T-cell Responses by Inducing E-FABP–Mediated Mitochondrial Dysfunction
Authors: Jin Rong , Hao Jiaqing , Yi Yanmei , Yin Di , Hua Yuan , Li Xiaohong , Bao Hanmei , Han Xianlin , Egilmez Nejat K. , Sauter Edward R. , Li Bing
Published: March 2023

Supplementary Figures and Tables
Table S3 from CstF64-Induced Shortening of the BID 3′UTR Promotes Esophageal Squamous Cell Carcinoma Progression by Disrupting ceRNA Cross-talk with ZFP36L2
Authors: Lin Ai , Ji Ping , Niu Xiangjie , Zhao Xuan , Chen Yamei , Liu Weiling , Liu Yachen , Fan Wenyi , Sun Yanxia , Miao Chuanwang , Zhang Shaosen , Tan Wen , Lin Dongxin , Wagner Eric J. , Wu Chen
Published: March 2023

Significant shortened and overexpressed genes in ESCC
Supplementary Dataset 4 from Characterizing Macrophage Diversity in Metastasis-Bearing Lungs Reveals a Lipid-Associated Macrophage Subset
Authors: Huggins Danielle N. , LaRue Rebecca S. , Wang Ying , Knutson Todd P. , Xu Yingzheng , Williams Jesse W. , Schwertfeger Kathryn L.
Published: March 2023

Gene set enrichment analysis of LAM vs. AM vs. IM.
Table S1 from CstF64-Induced Shortening of the BID 3′UTR Promotes Esophageal Squamous Cell Carcinoma Progression by Disrupting ceRNA Cross-talk with ZFP36L2
Authors: Lin Ai , Ji Ping , Niu Xiangjie , Zhao Xuan , Chen Yamei , Liu Weiling , Liu Yachen , Fan Wenyi , Sun Yanxia , Miao Chuanwang , Zhang Shaosen , Tan Wen , Lin Dongxin , Wagner Eric J. , Wu Chen
Published: March 2023

Select characteristics of 94 patients with ESCC in this study
Supplementary Dataset 1 from Characterizing Macrophage Diversity in Metastasis-Bearing Lungs Reveals a Lipid-Associated Macrophage Subset
Authors: Huggins Danielle N. , LaRue Rebecca S. , Wang Ying , Knutson Todd P. , Xu Yingzheng , Williams Jesse W. , Schwertfeger Kathryn L.
Published: March 2023

Differential gene expression analysis of biological replicate 1.
Supplementary Data from Characterizing Macrophage Diversity in Metastasis-Bearing Lungs Reveals a Lipid-Associated Macrophage Subset
Authors: Huggins Danielle N. , LaRue Rebecca S. , Wang Ying , Knutson Todd P. , Xu Yingzheng , Williams Jesse W. , Schwertfeger Kathryn L.
Published: March 2023

Figure legends for Supplementary Data
Supplementary Table S2 from The Common Germline TP53-R337H Mutation Is Hypomorphic and Confers Incomplete Penetrance and Late Tumor Onset in a Mouse Model
Authors: Jeffers John R. , Pinto Emilia M. , Rehg Jerold E. , Clay Michael R. , Wang Jinling , Neale Geoffrey , Heath Richard J. , Lozano Guillermina , Lalli Enzo , Figueiredo Bonald C. , Pappo Alberto S. , Rodriguez-Galindo Carlos , Chen Wenan , Pounds Stanley , Ribeiro Raul C. , Zambetti Gerard P.
Published: March 2023

Mdm2 Knockout Embryonic Lethality
Supplementary Figure S2 from The Common Germline TP53-R337H Mutation Is Hypomorphic and Confers Incomplete Penetrance and Late Tumor Onset in a Mouse Model
Authors: Jeffers John R. , Pinto Emilia M. , Rehg Jerold E. , Clay Michael R. , Wang Jinling , Neale Geoffrey , Heath Richard J. , Lozano Guillermina , Lalli Enzo , Figueiredo Bonald C. , Pappo Alberto S. , Rodriguez-Galindo Carlos , Chen Wenan , Pounds Stanley , Ribeiro Raul C. , Zambetti Gerard P.
Published: March 2023

Cell death in response to radiation is impaired in thymocytes and splenocytes expressing Mutant p53-R334H.
Supplementary Figure S1 from The Common Germline TP53-R337H Mutation Is Hypomorphic and Confers Incomplete Penetrance and Late Tumor Onset in a Mouse Model
Authors: Jeffers John R. , Pinto Emilia M. , Rehg Jerold E. , Clay Michael R. , Wang Jinling , Neale Geoffrey , Heath Richard J. , Lozano Guillermina , Lalli Enzo , Figueiredo Bonald C. , Pappo Alberto S. , Rodriguez-Galindo Carlos , Chen Wenan , Pounds Stanley , Ribeiro Raul C. , Zambetti Gerard P.
Published: March 2023

Kaplan-Meier Survival Curve.
Supplementary Table S1 from Fam20C Regulates Bone Resorption and Breast Cancer Bone Metastasis through Osteopontin and BMP4
Authors: Zuo Hao , Yang Dengbao , Wan Yihong
Published: March 2023

Supplementary Table S1
Supplementary Data from Landscape of MicroRNA Regulatory Network Architecture and Functional Rerouting in Cancer
Authors: Hua Xu , Li Yongsheng , Pentaparthi Sairahul R. , McGrail Daniel J. , Zou Raymond , Guo Li , Shrawat Aditya , Cirillo Kara M. , Li Qing , Bhat Akshay , Xu Min , Qi Dan , Singh Ashok , McGrath Francis , Andrews Steven , Aung Kyaw Lwin , Das Jishnu , Zhou Yunyun , Lodi Alessia , Mills Gordon B. , Eckhardt S. Gail , Mendillo Marc L. , Tiziani Stefano , Wu Erxi , Huang Jason H. , Sahni Nidhi , Yi S. Stephen
Published: March 2023

Supplementary Table S2
Supplementary Data from Landscape of MicroRNA Regulatory Network Architecture and Functional Rerouting in Cancer
Authors: Hua Xu , Li Yongsheng , Pentaparthi Sairahul R. , McGrail Daniel J. , Zou Raymond , Guo Li , Shrawat Aditya , Cirillo Kara M. , Li Qing , Bhat Akshay , Xu Min , Qi Dan , Singh Ashok , McGrath Francis , Andrews Steven , Aung Kyaw Lwin , Das Jishnu , Zhou Yunyun , Lodi Alessia , Mills Gordon B. , Eckhardt S. Gail , Mendillo Marc L. , Tiziani Stefano , Wu Erxi , Huang Jason H. , Sahni Nidhi , Yi S. Stephen
Published: March 2023

Supplementary Table S4
Supplementary figure S4 from Targeting eIF4A-Dependent Translation of KRAS Signaling Molecules
Authors: Singh Kamini , Lin Jianan , Lecomte Nicolas , Mohan Prathibha , Gokce Askan , Sanghvi Viraj R. , Jiang Man , Grbovic-Huezo Olivera , Burčul Antonija , Stark Stefan G. , Romesser Paul B. , Chang Qing , Melchor Jerry P. , Beyer Rachel K. , Duggan Mark , Fukase Yoshiyuki , Yang Guangli , Ouerfelli Ouathek , Viale Agnes , de Stanchina Elisa , Stamford Andrew W. , Meinke Peter T. , Rätsch Gunnar , Leach Steven D. , Ouyang Zhengqing , Wendel Hans-Guido
Published: March 2023

Supplementary figure S4
Supplementary Figure S3 from Targeting eIF4A-Dependent Translation of KRAS Signaling Molecules
Authors: Singh Kamini , Lin Jianan , Lecomte Nicolas , Mohan Prathibha , Gokce Askan , Sanghvi Viraj R. , Jiang Man , Grbovic-Huezo Olivera , Burčul Antonija , Stark Stefan G. , Romesser Paul B. , Chang Qing , Melchor Jerry P. , Beyer Rachel K. , Duggan Mark , Fukase Yoshiyuki , Yang Guangli , Ouerfelli Ouathek , Viale Agnes , de Stanchina Elisa , Stamford Andrew W. , Meinke Peter T. , Rätsch Gunnar , Leach Steven D. , Ouyang Zhengqing , Wendel Hans-Guido
Published: March 2023

Supplementary Figure S3
Table S1 from Chr20q Amplification Defines a Distinct Molecular Subtype of Microsatellite Stable Colorectal Cancer
Authors: Zhang Baoyi , Yao Kevin , Zhou Emily , Zhang Lanjing , Cheng Chao
Published: March 2023

Table S1. Colon adenocarcinoma and rectum adenocarcinoma microarray datasets used for prognosis analysis in this study. For each dataset, its GEO ID, platform, author, PMID, survival information type, number of samples, number of MSS-A and MSS-N, age information, mean survival time and chemotherapy information are provided. Some information was missing. For GSE87211, since microsatellite status isn't provided, all samples are divided into 2 classes: Chr20q-amplification and Chr20q non-amplification, associated with columns "MSS-A" and "MSS-N".
Supplementary Material from Chr20q Amplification Defines a Distinct Molecular Subtype of Microsatellite Stable Colorectal Cancer
Authors: Zhang Baoyi , Yao Kevin , Zhou Emily , Zhang Lanjing , Cheng Chao
Published: March 2023

Supplementary Material. Legends for supplementary tables and figures are included
Supplementary Data from Targeting Mitochondrial Iron Metabolism Suppresses Tumor Growth and Metastasis by Inducing Mitochondrial Dysfunction and Mitophagy
Authors: Sandoval-Acuña Cristian , Torrealba Natalia , Tomkova Veronika , Jadhav Sukanya B. , Blazkova Kristyna , Merta Ladislav , Lettlova Sandra , Adamcová Miroslava K. , Rosel Daniel , Brábek Jan , Neuzil Jiri , Stursa Jan , Werner Lukas , Truksa Jaroslav
Published: March 2023

Supplementary Methods, Tables and Figures
Figure S1 from Targeting Mitochondrial Iron Metabolism Suppresses Tumor Growth and Metastasis by Inducing Mitochondrial Dysfunction and Mitophagy
Authors: Sandoval-Acuña Cristian , Torrealba Natalia , Tomkova Veronika , Jadhav Sukanya B. , Blazkova Kristyna , Merta Ladislav , Lettlova Sandra , Adamcová Miroslava K. , Rosel Daniel , Brábek Jan , Neuzil Jiri , Stursa Jan , Werner Lukas , Truksa Jaroslav
Published: March 2023

High Resolution Supplementary Figure 1
Supplementary Data from Raman Spectroscopy and Machine Learning Reveals Early Tumor Microenvironmental Changes Induced by Immunotherapy
Authors: Paidi Santosh Kumar , Rodriguez Troncoso Joel , Raj Piyush , Monterroso Diaz Paola , Ivers Jesse D. , Lee David E. , Avaritt Nathan L. , Gies Allen J. , Quick Charles M. , Byrum Stephanie D. , Tackett Alan J. , Rajaram Narasimhan , Barman Ishan
Published: March 2023

Supplementary figures S1 and S2 and supplementary tables ST1 and ST2
Supplementary Data from Analysis of the Estrogen Receptor-Associated LncRNA Landscape Identifies a Role for ERLC1 in Breast Cancer Progression
Authors: Yuan Hui , Yan Linlin , Wu Mingming , Shang Yinzhong , Guo Qianying , Ma Xin , Zhang Xiao , Zhu Yong , Wu Zhengsheng , Lobie Peter E. , Zhu Tao
Published: March 2023

Supplementary table S1 lists 22 breast cancer and ERα associated lncRNAs. Supplementary table S2 lists all primers sequences, oligonucleotides sequences, and probes sequences used in this study. Supplementary table S3 shows the information of antibodies used in this study. Supplementary table S4 shows the sequence of ERLC1 in the overexpression system. Supplementary figure S1 shows that ERLC1 is screened as an ERα-regulated gene in breast cancer. Supplementary figure S2 shows that ERLC1 is an oncogene in MCF-7 and T47D cells. Supplementary figure S3 shows that ERLC1 regulates anti-estrogen sensitivity and tamoxifen resistance in T47D cells. Supplementary figure S4 shows that miR-129 is a tumor suppressor gene and ERLC1 expression is negatively correlated with miR-129 levels. Supplementary figure S5 shows that ERLC1 promotes ESR1 expression through sequestration of miR-129. Supplementary figure S6 shows that ERLC1 and FXR1 form a functional complex stabilizing ESR1 mRNA. Supplementary figure S7 shows that ESR1 mutants did not interact with ERLC1 promoter. Supplementary figure S8 shows that ERLC1 depletion reduces resistance to fulvestrant and palbociclib in MCF-7 TamR cells.
Supplementary Figure from Phosphorylation and Stabilization of PD-L1 by CK2 Suppresses Dendritic Cell Function
Authors: Zhao Xixi , Wei Yongkun , Chu Yu-Yi , Li Yintao , Hsu Jung-Mao , Jiang Zhou , Liu Chunxiao , Hsu Jennifer L. , Chang Wei-Chao , Yang Riyao , Chan Li-Chuan , Qu Jingkun , Zhang Shuqun , Ying Haoqiang , Yu Dihua , Hung Mien-Chie
Published: March 2023

Supplementary Figure from Phosphorylation and Stabilization of PD-L1 by CK2 Suppresses Dendritic Cell Function
Supplementary Data from Chromatin Remodeling Induced by ARID1A Loss in Lung Cancer Promotes Glycolysis and Confers JQ1 Vulnerability
Authors: Liu Xiaoyu , Li Zhi , Wang Zhongmin , Liu Fei , Zhang Linling , Ke Jingjing , Xu Xu , Zhang Yuefang , Yuan Yiting , Wei Tao , Shan Qungang , Chen Yingjie , Huang Wei , Gao Jie , Wu Nan , Chen Fuliang , Sun Lunquan , Qiu Zilong , Deng Yuezhen , Wang Xiaojing
Published: March 2023

Supplementary Data from Chromatin Remodeling Induced by ARID1A Loss in Lung Cancer Promotes Glycolysis and Confers JQ1 Vulnerability
Supplementary Table from Noncanonical Function of AGO2 Augments T-cell Receptor Signaling in T-cell Prolymphocytic Leukemia
Authors: Braun Till , Stachelscheid Johanna , Bley Nadine , Oberbeck Sebastian , Otte Moritz , Müller Tony Andreas , Wahnschaffe Linus , Glaß Markus , Ommer Katharina , Franitza Marek , Gathof Birgit , Altmüller Janine , Hallek Michael , Auguin Daniel , Hüttelmaier Stefan , Schrader Alexandra , Herling Marco
Published: March 2023

Supplementary Table from Noncanonical Function of AGO2 Augments T-cell Receptor Signaling in T-cell Prolymphocytic Leukemia
Supplementary Figure from Neoadjuvant Intratumoral Immunotherapy with TLR9 Activation and Anti-OX40 Antibody Eradicates Metastatic Cancer
Authors: Hong Wan Xing , Sagiv-Barfi Idit , Czerwinski Debra K. , Sallets Adrienne , Levy Ronald
Published: March 2023

Supplementary Figure from Neoadjuvant Intratumoral Immunotherapy with TLR9 Activation and Anti-OX40 Antibody Eradicates Metastatic Cancer
Supplementary Figure from CircRPN2 Inhibits Aerobic Glycolysis and Metastasis in Hepatocellular Carcinoma
Authors: Li Jia , Hu Zhi-Qiang , Yu Song-Yang , Mao Li , Zhou Zheng-Jun , Wang Peng-Cheng , Gong Yu , Su Sheng , Zhou Jian , Fan Jia , Zhou Shao-Lai , Huang Xiao-Wu
Published: March 2023

Supplementary Figure from CircRPN2 Inhibits Aerobic Glycolysis and Metastasis in Hepatocellular Carcinoma
Supplemental Table II from Targeting Chemotherapy to Decondensed H3K27me3-Marked Chromatin of AML Cells Enhances Leukemia Suppression
Authors: Porazzi Patrizia , Petruk Svetlana , Pagliaroli Luca , De Dominici Marco , Deming David , Puccetti Matthew V. , Kushinsky Saul , Kumar Gaurav , Minieri Valentina , Barbieri Elisa , Deliard Sandra , Grande Alexis , Trizzino Marco , Gardini Alessandro , Canaani Eli , Palmisiano Neil , Porcu Pierluigi , Ertel Adam , Fortina Paolo , Eischen Christine M. , Mazo Alexander , Calabretta Bruno
Published: March 2023

Supplemental Table II
List of Primers used for Real Time PCR experiments
Supplementary Data from Antibody-Peptide Epitope Conjugates for Personalized Cancer Therapy
Authors: Zhang Songfa , Yan Chuan , Millar David G. , Yang Qiqi , Heather James M. , Langenbucher Adam , Morton Laura T. , Sepulveda Sean , Alpert Eric , Whelton Lauren R. , Zarrella Dominique T. , Guo Mei , Minogue Eleanor , Lawrence Michael S. , Rueda Bo R. , Spriggs David R. , Lu Weiguo , Langenau David M. , Cobbold Mark
Published: March 2023

Supplementary Data from Antibody-Peptide Epitope Conjugates for Personalized Cancer Therapy
Supplementary Data from Identification of Active Bronchioalveolar Stem Cells as the Cell of Origin in Lung Adenocarcinoma
Authors: Yin Huijing , Jing Bo , Xu Dongliang , Guo Wenzheng , Sun Beibei , Zhang Jie , Liao Yueling , Song Hongyong , Wang Tong , Liu Shuli , Kuang Yanbin , Hu Min , Li Kaimi , Zhang Siwei , Zhang Hongjia , Xu Jianhua , Li Xue , Du Jing , Wu Yadi , Wu Yingli , Wang Qi , Yao Feng , Chin Yueh Eugene , Zhou Binhua P. , Deng Jiong
Published: March 2023

Supplementary Data from Identification of Active Bronchioalveolar Stem Cells as the Cell of Origin in Lung Adenocarcinoma
Supplementary Figure from Chaperone-Mediated Autophagy Controls Proteomic and Transcriptomic Pathways to Maintain Glioma Stem Cell Activity
Authors: Auzmendi-Iriarte Jaione , Otaegi-Ugartemendia Maddalen , Carrasco-Garcia Estefania , Azkargorta Mikel , Diaz Antonio , Saenz-Antoñanzas Ander , Andermatten Joaquin Andrés , Garcia-Puga Mikel , Garcia Idoia , Elua-Pinin Alejandro , Ruiz Irune , Sampron Nicolas , Elortza Felix , Cuervo Ana Maria , Matheu Ander
Published: March 2023

Supplementary Figure from Chaperone-Mediated Autophagy Controls Proteomic and Transcriptomic Pathways to Maintain Glioma Stem Cell Activity
Supplementary Video 3 from Novel Mouse Models of Bladder Cancer Identify a Prognostic Signature Associated with Risk of Disease Progression
Authors: Park Soonbum , Rong Lijie , Owczarek Tomasz B. , Bernardo Matteo Di , Shoulson Rivka L. , Chua Chee-Wai , Kim Jaime Y. , Lankarani Amir , Chakrapani Prithi , Syed Talal , McKiernan James M. , Solit David B. , Shen Michael M. , Al-Ahmadie Hikmat A. , Abate-Shen Cory
Published: March 2023

Video of mouse procedures for post-surgical steps
Supplementary Table S2 from FGFR3 Destabilizes PD-L1 via NEDD4 to Control T-cell–Mediated Bladder Cancer Immune Surveillance
Authors: Jing Weiqiang , Wang Ganyu , Cui Zhiwei , Xiong Gaozhong , Jiang Xin , Li Yue , Li Wushan , Han Bo , Chen Shouzhen , Shi Benkang
Published: March 2023

Supplementary Table S2
Supplementary Data from ALKBH5-Mediated m6A Demethylation of GLUT4 mRNA Promotes Glycolysis and Resistance to HER2-Targeted Therapy in Breast Cancer
Authors: Liu Hao , Lyu Hui , Jiang Guanmin , Chen Danyang , Ruan Sanbao , Liu Shuang , Zhou Lukun , Yang Minqiang , Zeng Shanshan , He Zhimin , Wang Hongsheng , Li Hongsheng , Zheng Guopei , Liu Bolin
Published: March 2023

Supplementary Data from ALKBH5-Mediated m6A Demethylation of GLUT4 mRNA Promotes Glycolysis and Resistance to HER2-Targeted Therapy in Breast Cancer
Supplementary Data from Chemotherapy Coupled to Macrophage Inhibition Induces T-cell and B-cell Infiltration and Durable Regression in Triple-Negative Breast Cancer
Authors: Singh Swarnima , Lee Nigel , Pedroza Diego A. , Bado Igor L. , Hamor Clark , Zhang Licheng , Aguirre Sergio , Hu Jingyuan , Shen Yichao , Xu Yitian , Gao Yang , Zhao Na , Chen Shu-Hsia , Wan Ying-Wooi , Liu Zhandong , Chang Jeffrey T. , Hollern Daniel , Perou Charles M. , Zhang Xiang H.F. , Rosen Jeffrey M.
Published: March 2023

Supplementary Data from Chemotherapy Coupled to Macrophage Inhibition Induces T-cell and B-cell Infiltration and Durable Regression in Triple-Negative Breast Cancer
Supplementary Table from Inhibition of Karyopherin β1-Mediated Nuclear Import Disrupts Oncogenic Lineage-Defining Transcription Factor Activity in Small Cell Lung Cancer
Authors: Kelenis Demetra P. , Rodarte Kathia E. , Kollipara Rahul K. , Pozo Karine , Choudhuri Shreoshi Pal , Spainhower Kyle B. , Wait Sarah J. , Stastny Victor , Oliver Trudy G. , Johnson Jane E.
Published: March 2023

Supplementary Table from Inhibition of Karyopherin β1-Mediated Nuclear Import Disrupts Oncogenic Lineage-Defining Transcription Factor Activity in Small Cell Lung Cancer
Supplementary Figure from Developmental Pathways Are Epigenetically Reprogrammed during Lung Cancer Brain Metastasis
Authors: Karlow Jennifer A. , Devarakonda Siddhartha , Xing Xiaoyun , Jang Hyo Sik , Govindan Ramaswamy , Watson Mark , Wang Ting
Published: March 2023

Supplementary Figure from Developmental Pathways Are Epigenetically Reprogrammed during Lung Cancer Brain Metastasis
Supplementary Figure from IL6 and CCL18 Mediate Cross-talk between VHL-Deficient Kidney Cells and Macrophages during Development of Renal Cell Carcinoma
Authors: Nguyen Thi-Ngoc , Nguyen-Tran Hieu-Huy , Chen Chen-Yun , Hsu Tien
Published: March 2023

Supplementary Figure from IL6 and CCL18 Mediate Cross-talk between VHL-Deficient Kidney Cells and Macrophages during Development of Renal Cell Carcinoma
Supplementary Figure from PIM2 Expression Induced by Proinflammatory Macrophages Suppresses Immunotherapy Efficacy in Hepatocellular Carcinoma
Authors: Wang Jun-Cheng , Chen Dong-Ping , Lu Shi-Xun , Chen Jin-Bin , Wei Yuan , Liu Xue-Chao , Tang Yu-Hao , Zhang Rongxin , Chen Jian-Cong , Kan Anna , Xu Li , Zhang Yao-Jun , Hou Jiajie , Kuang Dong-Ming , Chen Min-Shan , Zhou Zhong-Guo
Published: March 2023

Supplementary Figure from PIM2 Expression Induced by Proinflammatory Macrophages Suppresses Immunotherapy Efficacy in Hepatocellular Carcinoma
Supplementary Data from Computational Identification of Preneoplastic Cells Displaying High Stemness and Risk of Cancer Progression
Authors: Liu Tianyuan , Zhao Xuan , Lin Yuan , Luo Qi , Zhang Shaosen , Xi Yiyi , Chen Yamei , Lin Lin , Fan Wenyi , Yang Jie , Ma Yuling , Maity Alok K. , Huang Yanyi , Wang Jianbin , Chang Jiang , Lin Dongxin , Teschendorff Andrew E. , Wu Chen
Published: March 2023

Supplementary Data from Computational Identification of Preneoplastic Cells Displaying High Stemness and Risk of Cancer Progression
Supplementary Figure from NELL1 Regulates the Matrisome to Promote Osteosarcoma Progression
Authors: Qin Qizhi , Gomez-Salazar Mario , Tower Robert J. , Chang Leslie , Morris Carol D. , McCarthy Edward F. , Ting Kang , Zhang Xinli , James Aaron W.
Published: March 2023

Supplementary Figure from NELL1 Regulates the Matrisome to Promote Osteosarcoma Progression
Supplementary Data from NELL1 Regulates the Matrisome to Promote Osteosarcoma Progression
Authors: Qin Qizhi , Gomez-Salazar Mario , Tower Robert J. , Chang Leslie , Morris Carol D. , McCarthy Edward F. , Ting Kang , Zhang Xinli , James Aaron W.
Published: March 2023

Supplementary Data from NELL1 Regulates the Matrisome to Promote Osteosarcoma Progression
Supplementary Figure from Dopamine Signaling Promotes Tissue-Resident Memory Differentiation of CD8+ T Cells and Antitumor Immunity
Authors: Chen Yingshi , Yan Shu-Mei , Pu Zeyu , Feng Jinzhu , Tan Likai , Li Yuzhuang , Hu Hongrong , Huang Wenjing , Lin Yingtong , Peng Zhilin , He Xin , Huang Feng , Zhang Hui , Zhang Yiwen
Published: March 2023

Supplementary Figure from Dopamine Signaling Promotes Tissue-Resident Memory Differentiation of CD8+ T Cells and Antitumor Immunity