bluuebunny/crossref_metadata_2025 huggingface dataset:
Computer-Aided Diagnosis System of Alzheimer’s Disease Based on Multimodal Fusion: Tissue Quantification Based on the Hybrid Fuzzy-Genetic-Possibilistic Model and Discriminative Classification Based on the SVDD Model
Authors: Lazli Lilia , Boukadoum Mounir , Ait Mohamed Otmane
Published: October 2019

An improved computer-aided diagnosis (CAD) system is proposed for the early diagnosis of Alzheimer’s disease (AD) based on the fusion of anatomical (magnetic resonance imaging (MRI)) and functional (8F-fluorodeoxyglucose positron emission tomography (FDG-PET)) multimodal images, and which helps to address the strong ambiguity or the uncertainty produced in brain images. The merit of this fusion is that it provides anatomical information for the accurate detection of pathological areas characterized in functional imaging by physiological abnormalities. First, quantification of brain tissue volumes is proposed based on a fusion scheme in three successive steps: modeling, fusion and decision. (1) Modeling which consists of three sub-steps: the initialization of the centroids of the tissue clusters by applying the Bias corrected Fuzzy C-Means (FCM) clustering algorithm. Then, the optimization of the initial partition is performed by running genetic algorithms. Finally, the creation of white matter (WM), gray matter (GM) and cerebrospinal fluid (CSF) tissue maps by applying the Possibilistic FCM clustering algorithm. (2) Fusion using a possibilistic operator to merge the maps of the MRI and PET images highlighting redundancies and managing ambiguities. (3) Decision offering more representative anatomo-functional fusion images. Second, a support vector data description (SVDD) classifier is used that must reliably distinguish AD from normal aging and automatically detects outliers. The “divide and conquer” strategy is then used, which speeds up the SVDD process and reduces the load and cost of the calculating. The robustness of the tissue quantification process is proven against noise (20% level), partial volume effects and when inhomogeneities of spatial intensity are high. Thus, the superiority of the SVDD classifier over competing conventional systems is also demonstrated with the adoption of the 10-fold cross-validation approach for synthetic datasets (Alzheimer disease neuroimaging (ADNI) and Open Access Series of Imaging Studies (OASIS)) and real images. The percentage of classification in terms of accuracy, sensitivity, specificity and area under ROC curve was 93.65%, 90.08%, 92.75% and 97.3%; 91.46%, 92%, 91.78% and 96.7%; 85.09%, 86.41%, 84.92% and 94.6% in the case of the ADNI, OASIS and real images respectively.
Epigenetic Reprogramming for Targeting IDH-Mutant Malignant Gliomas
Authors: Park Jong-Whi , Turcan Şevin
Published: October 2019

Targeting the epigenome has been considered a compelling treatment modality for several cancers, including gliomas. Nearly 80% of the lower-grade gliomas and secondary glioblastomas harbor recurrent mutations in isocitrate dehydrogenase (IDH). Mutant IDH generates high levels of 2-hydroxyglutarate (2-HG) that inhibit various components of the epigenetic machinery, including histone and DNA demethylases. The encouraging results from current epigenetic therapies in hematological malignancies have reinvigorated the interest in solid tumors and gliomas, both preclinically and clinically. Here, we summarize the recent advancements in epigenetic therapy for lower-grade gliomas and discuss the challenges associated with current treatment options. A particular focus is placed on therapeutic mechanisms underlying favorable outcome with epigenetic-based drugs in basic and translational research of gliomas. This review also highlights emerging bridges to combination treatment with respect to epigenetic drugs. Given that epigenetic therapies, particularly DNA methylation inhibitors, increase tumor immunogenicity and antitumor immune responses, appropriate drug combinations with immune checkpoint inhibitors may lead to improvement of treatment effectiveness of immunotherapy, ultimately leading to tumor cell eradication.
What Do Microglia Really Do in Healthy Adult Brain?
Authors: Augusto-Oliveira Marcus , Arrifano Gabriela P. , Lopes-Araújo Amanda , Santos-Sacramento Leticia , Takeda Priscila Y. , Anthony Daniel C. , Malva João O. , Crespo-Lopez Maria Elena
Published: October 2019

Microglia originate from yolk sac-primitive macrophages and auto-proliferate into adulthood without replacement by bone marrow-derived circulating cells. In inflammation, stroke, aging, or infection, microglia have been shown to contribute to brain pathology in both deleterious and beneficial ways, which have been studied extensively. However, less is known about their role in the healthy adult brain. Astrocytes and oligodendrocytes are widely accepted to strongly contribute to the maintenance of brain homeostasis and to modulate neuronal function. On the other hand, contribution of microglia to cognition and behavior is only beginning to be understood. The ability to probe their function has become possible using microglial depletion assays and conditional mutants. Studies have shown that the absence of microglia results in cognitive and learning deficits in rodents during development, but this effect is less pronounced in adults. However, evidence suggests that microglia play a role in cognition and learning in adulthood and, at a cellular level, may modulate adult neurogenesis. This review presents the case for repositioning microglia as key contributors to the maintenance of homeostasis and cognitive processes in the healthy adult brain, in addition to their classical role as sentinels coordinating the neuroinflammatory response to tissue damage and disease.
MicroRNA-29a Suppresses CD36 to Ameliorate High Fat Diet-Induced Steatohepatitis and Liver Fibrosis in Mice
Authors: Lin Hung-Yu , Wang Feng-Sheng , Yang Ya-Ling , Huang Ying-Hsien
Published: October 2019

MicroRNA-29 (miR-29) has been shown to play a critical role in reducing inflammation and fibrosis following liver injury. Non-alcoholic fatty liver disease (NAFLD) occurs when fat is deposited (steatosis) in the liver due to causes other than excessive alcohol use and is associated with liver fibrosis. In this study, we asked whether miR-29a could reduce experimental high fat diet (HFD)-induced obesity and liver fibrosis in mice. We performed systematical expression analyses of miR-29a transgenic mice (miR-29aTg mice) and wild-type littermates subjected to HFD-induced NAFLD. The results demonstrated that increased miR-29a not only alleviated HFD-induced body weight gain but also subcutaneous, visceral, and intestinal fat accumulation and hepatocellular steatosis in mice. Furthermore, hepatic tissue in the miR-29aTg mice displayed a weak fibrotic matrix concomitant with low fibrotic collagen1α1 expression within the affected tissues compared to the wild-type (WT) mice fed the HFD diet. Increased miR-29a signaling also resulted in the downregulation of expression of the epithelial mesenchymal transition-executing transcription factor snail, mesenchymal markers vimentin, and such pro-inflammation markers as il6 and mcp1 within the liver tissue. Meanwhile, miR-29aTg-HFD mice exhibited significantly lower levels of peroxisome proliferator-activated receptor γ (PPARγ), mitochondrial transcription factor A TFAM, and mitochondria DNA content in the liver than the WT-HFD mice. An in vitro luciferase reporter assay further confirmed that miR-29a mimic transfection reduced fatty acid translocase CD36 expression in HepG2 cells. Conclusion: Our data provide new insights that miR-29a can improve HDF-induced obesity, hepatocellular steatosis, and fibrosis, as well as highlight the role of miR-29a in regulation of NAFLD.
Opposite Effects of Moderate and Extreme Cx43 Deficiency in Conditional Cx43-Deficient Mice on Angiotensin II-Induced Cardiac Fibrosis
Authors: Valls-Lacalle Laura , Negre-Pujol Corall , Rodríguez Cristina , Varona Saray , Valera-Cañellas Antoni , Consegal Marta , Martínez-González Jose , Rodríguez-Sinovas Antonio
Published: October 2019

Connexin 43 (Cx43) is essential for cardiac electrical coupling, but its effects on myocardial fibrosis is controversial. Here, we analyzed the role of Cx43 in myocardial fibrosis caused by angiotensin II (AngII) using Cx43fl/fl and Cx43Cre-ER(T)/fl inducible knock-out (Cx43 content: 50%) mice treated with vehicle or 4-hydroxytamoxifen (4-OHT) to induce a Cre-ER(T)-mediated global deletion of the Cx43 floxed allele. Myocardial collagen content was enhanced by AngII in all groups (n = 8–10/group, p < 0.05). However, animals with partial Cx43 deficiency (vehicle-treated Cx43Cre-ER(T)/fl) had a significantly higher AngII-induced collagen accumulation that reverted when treated with 4-OHT, which abolished Cx43 expression. The exaggerated fibrotic response to AngII in partially deficient Cx43Cre-ER(T)/fl mice was associated with enhanced p38 MAPK activation and was not evident in Cx43 heterozygous (Cx43+/-) mice. In contrast, normalization of interstitial collagen in 4-OHT-treated Cx43Cre-ER(T)/fl animals correlated with enhanced MMP-9 activity, IL-6 and NOX2 mRNA expression, and macrophage content, and with reduced α-SMA and SM22α in isolated fibroblasts. In conclusion, our data demonstrates an exaggerated, p38 MAPK-dependent, fibrotic response to AngII in partially deficient Cx43Cre-ER(T)/fl mice, and a paradoxical normalization of collagen deposition in animals with an almost complete Cx43 ablation, an effect associated with increased MMP-9 activity and inflammatory response and reduced fibroblasts differentiation.
Invertebrate Retinal Progenitors as Regenerative Models in a Microfluidic System
Authors: Pena Caroline D. , Zhang Stephanie , Majeska Robert , Venkatesh Tadmiri , Vazquez Maribel
Published: October 2019

Regenerative retinal therapies have introduced progenitor cells to replace dysfunctional or injured neurons and regain visual function. While contemporary cell replacement therapies have delivered retinal progenitor cells (RPCs) within customized biomaterials to promote viability and enable transplantation, outcomes have been severely limited by the misdirected and/or insufficient migration of transplanted cells. RPCs must achieve appropriate spatial and functional positioning in host retina, collectively, to restore vision, whereas movement of clustered cells differs substantially from the single cell migration studied in classical chemotaxis models. Defining how RPCs interact with each other, neighboring cell types and surrounding extracellular matrixes are critical to our understanding of retinogenesis and the development of effective, cell-based approaches to retinal replacement. The current article describes a new bio-engineering approach to investigate the migratory responses of innate collections of RPCs upon extracellular substrates by combining microfluidics with the well-established invertebrate model of Drosophila melanogaster. Experiments utilized microfluidics to investigate how the composition, size, and adhesion of RPC clusters on defined extracellular substrates affected migration to exogenous chemotactic signaling. Results demonstrated that retinal cluster size and composition influenced RPC clustering upon extracellular substrates of concanavalin (Con-A), Laminin (LM), and poly-L-lysine (PLL), and that RPC cluster size greatly altered collective migratory responses to signaling from Fibroblast Growth Factor (FGF), a primary chemotactic agent in Drosophila. These results highlight the significance of examining collective cell-biomaterial interactions on bio-substrates of emerging biomaterials to aid directional migration of transplanted cells. Our approach further introduces the benefits of pairing genetically controlled models with experimentally controlled microenvironments to advance cell replacement therapies.
Fatigue and Mechanical Behavior of Ti-6Al-4V Alloy with CrN and TiN Coating Deposited by Magnetic Filtered Cathodic Vacuum Arc Process
Authors: Zhang Zhaolu , Chen Jiao , He Guangyu , Yang Guanjun
Published: October 2019

Coatings of 3 μm CrN and TiN were prepared by a magnetic filtered cathodic vacuum arc process (MFCVA) on Ti-6Al-4V substrates, respectively. Rotating bending tests and uniaxial tests were conducted for investigating the effect of the thin and uniformly distributed hard CrN and TiN coatings on the fatigue and mechanical properties of Ti-6Al-4V substrate. During both tests, no coating spallation phenomenon was observed, which indicated that the hard coating bound well with the substrate. The fatigue test results showed that the fatigue strength of the coated sample was decreased in both the low- and high-cycling fatigue regimes compared with the uncoated Ti-6Al-4V substrate. Compared with the TiN coating, the CrN coating caused a more significant reduction on the fatigue property of the uncoated Ti-6Al-4V substrate due to its inferior plastic deformation capacity. Furthermore, the tensile test results showed that the coated sample had a relative higher ultimate strength, yield strength, and lower elongation compared with the uncoated Ti-6Al-4V substrate. This may be due to the fact that the hard coating could suppress the initiation of cracks, and so higher stress was needed for crack initiating. During the crack propagation period, the hard coating cracked at a relative higher velocity, which led to cracking of the ductile substrate and elongation reduction.
The Spider Anatomy Ontology (SPD)—A Versatile Tool to Link Anatomy with Cross-Disciplinary Data
Authors: Ramírez Martín J. , Michalik Peter
Published: October 2019

Spiders are a diverse group with a high eco-morphological diversity, which complicates anatomical descriptions especially with regard to its terminology. New terms are constantly proposed, and definitions and limits of anatomical concepts are regularly updated. Therefore, it is often challenging to find the correct terms, even for trained scientists, especially when the terminology has obstacles such as synonyms, disputed definitions, ambiguities, or homonyms. Here, we present the Spider Anatomy Ontology (SPD), which we developed combining the functionality of a glossary (a controlled defined vocabulary) with a network of formalized relations between terms that can be used to compute inferences. The SPD follows the guidelines of the Open Biomedical Ontologies and is available through the NCBO BioPortal (ver. 1.1). It constitutes of 757 valid terms and definitions, is rooted with the Common Anatomy Reference Ontology (CARO), and has cross references to other ontologies, especially of arthropods. The SPD offers a wealth of anatomical knowledge that can be used as a resource for any scientific study as, for example, to link images to phylogenetic datasets, compute structural complexity over phylogenies, and produce ancestral ontologies. By using a common reference in a standardized way, the SPD will help bridge diverse disciplines, such as genomics, taxonomy, systematics, evolution, ecology, and behavior.
Leaf Abundance Affects Tree Height Estimation Derived from UAV Images
Authors: Huang Hongyu , He Shaodong , Chen Chongcheng
Published: October 2019

Tree height is an important vegetative structural parameter, and its accurate estimation is of significant ecological and commercial value. We collected UAV images of six tree species distributed throughout a subtropical campus during three periods from March to late May, during which some deciduous trees shed all of their leaves and then regrew, while other evergreen trees kept some of their leaves. The UAV imagery was processed by computer vision and photogrammetric software to generate a three-dimensional dense point cloud. Individual tree height information extracted from the dense photogrammetric point cloud was validated against the manually measured reference data. We found that the number of leaves in the canopy affected tree height estimation, especially for deciduous trees. During leaf-off conditions or the early season, when leaves were absent or sparse, it was difficult to reconstruct the 3D canopy structure fully from the UAV images, thus resulting in the underestimation of tree height; the accuracy improved considerably when there were more leaves. For Terminalia mantaly and Ficus virens, the root mean square errors (RMSEs) of tree height estimation reduced from 2.894 and 1.433 m (leaf-off) to 0.729 and 0.597 m (leaf-on), respectively. We provide direct evidence that leaf-on conditions have a positive effect on tree height measurements derived from UAV photogrammetric point clouds. This finding has important implications for forest monitoring, management, and change detection analysis.
Extracellular Heme Proteins Influence Bovine Myosatellite Cell Proliferation and the Color of Cell-Based Meat
Authors: Simsa Robin , Yuen John , Stout Andrew , Rubio Natalie , Fogelstrand Per , Kaplan David L.
Published: October 2019

Skeletal muscle-tissue engineering can be applied to produce cell-based meat for human consumption, but growth parameters need to be optimized for efficient production and similarity to traditional meat. The addition of heme proteins to plant-based meat alternatives was recently shown to increase meat-like flavor and natural color. To evaluate whether heme proteins also have a positive effect on cell-based meat production, bovine muscle satellite cells (BSCs) were grown in the presence of hemoglobin (Hb) or myoglobin (Mb) for up to nine days in a fibrin hydrogel along 3D-printed anchor-point constructs to generate bioartificial muscles (BAMs). The influence of heme proteins on cell proliferation, tissue development, and tissue color was analyzed. We found that the proliferation and metabolic activity of BSCs was significantly increased when Mb was added, while Hb had no, or a slightly negative, effect. Hb and, in particular, Mb application led to a very similar color of BAMs compared to cooked beef, which was not noticeable in groups without added heme proteins. Taken together, these results indicate a potential benefit of adding Mb to cell culture media for increased proliferation and adding Mb or Hb for the coloration of cell-based meat.
Germline-Specific Repetitive Elements in Programmatically Eliminated Chromosomes of the Sea Lamprey (Petromyzon marinus)
Authors: Timoshevskiy Vladimir A. , Timoshevskaya Nataliya Y. , Smith Jeramiah J.
Published: October 2019

The sea lamprey (Petromyzon marinus) is one of few vertebrate species known to reproducibly eliminate large fractions of its genome during normal embryonic development. This germline-specific DNA is lost in the form of large fragments, including entire chromosomes, and available evidence suggests that DNA elimination acts as a permanent silencing mechanism that prevents the somatic expression of a specific subset of “germline” genes. However, reconstruction of eliminated regions has proven to be challenging due to the complexity of the lamprey karyotype. We applied an integrative approach aimed at further characterization of the large-scale structure of eliminated segments, including: (1) in silico identification of germline-enriched repeats; (2) mapping the chromosomal location of specific repetitive sequences in germline metaphases; and (3) 3D DNA/DNA-hybridization to embryonic lagging anaphases, which permitted us to both verify the specificity of elements to physically eliminated chromosomes and characterize the subcellular organization of these elements during elimination. This approach resulted in the discovery of several repetitive elements that are found exclusively on the eliminated chromosomes, which subsequently permitted the identification of 12 individual chromosomes that are programmatically eliminated during early embryogenesis. The fidelity and specificity of these highly abundant sequences, their distinctive patterning in eliminated chromosomes, and subcellular localization in elimination anaphases suggest that these sequences might contribute to the specific targeting of chromosomes for elimination or possibly in molecular interactions that mediate their decelerated poleward movement in chromosome elimination anaphases, isolation into micronuclei and eventual degradation.
Likely Pathogenic Variants in One Third of Non-Syndromic Discontinuous Cleft Lip and Palate Patients
Authors: Demeer Bénédicte , Revencu Nicole , Helaers Raphael , Gbaguidi Cica , Dakpe Stéphanie , François Geneviève , Devauchelle Bernard , Bayet Bénédicte , Vikkula Miikka
Published: October 2019

Oral clefts are composed of cleft of the lip, cleft of the lip and palate, or cleft of the palate, and they are associated with a wide range of expression and severity. When cleft of the palate is associated with cleft of the lip with preservation of the primary palate, it defines an atypical phenotype called discontinuous cleft. Although this phenotype may represent 5% of clefts of the lip and/or palate (CLP), it is rarely specifically referred to and its pathophysiology is unknown. We conducted whole exome sequencing (WES) and apply a candidate gene approach to non-syndromic discontinuous CLP individuals in order to identify genes and deleterious variants that could underlie this phenotype. We discovered loss-of-function variants in two out of the seven individuals, implicating FGFR1 and DLG1 genes, which represents almost one third of this cohort. Whole exome sequencing of clinically well-defined subgroups of CLP, such as discontinuous cleft, is a relevant approach to study CLP etiopathogenesis. It could facilitate more accurate clinical, epidemiological and fundamental research, ultimately resulting in better diagnosis and care of CLP patients. Non-syndromic discontinuous cleft lip and palate seems to have a strong genetic basis.
The College Park, Maryland, Tornado of 24 September 2001
Authors: Pryor Kenneth L. , Wawrzyniak Tyler , Zhang Da-Lin
Published: October 2019

The 24 September 2001 College Park, Maryland, tornado was a long-track and strong tornado that passed within a close range of two Doppler radars. It was the third in a series of three tornadoes associated with a supercell storm that developed in Stafford County, Virginia, and initiated 3–4 km southwest of College Park and dissipated near Columbia, Howard County. The supercell tracked approximately 120 km and lasted for about 126 min. This study presents a synoptic and mesoscale overview of favorable conditions and forcing mechanisms that resulted in the severe convective outbreak associated with the College Park tornado. The results show many critical elements of the tornadic event, including a negative-tilted upper-level trough over the Ohio Valley, a jet stream with moderate vertical shear, a low-level warm, moist tongue of the air associated with strong southerly flow over south-central Maryland and Virginia, and significantly increased convective available potential energy (CAPE) during the late afternoon hours. A possible role of the urban heat island effects from Washington, DC, in increasing CAPE for the development of the supercell is discussed. Satellite imagery reveals the banded convective morphology with high cloud tops associated with the supercell that produced the College Park tornado. Operational WSR-88D data exhibit a high reflectivity “debris ball” or tornadic debris signature (TDS) within the hook echo, the evolution of the parent storm from a supercell structure to a bow echo, and a tornado cyclone signature (TCS). Many of the mesoscale features could be captured by contemporary numerical model analyses. This study concludes with a discussion of the effectiveness of the coordinated use of satellite and radar observations in the operational environment of nowcasting severe convection.
Hydrological Model for Sustainable Development in the Aral Sea Region
Authors: Krapivin Vladimir , Mkrtchyan Ferdenant , Rochon Gilbert
Published: October 2019

Possible scenarios of the Aral Sea crisis solution are discussed, and a new scenario is proposed. Previous scenarios have provided for the transfer of water from Siberian Rivers to Central Asia and the restriction of unsustainable expansion of irrigation in this region. The scenario proposed in this paper is partly based on the use of Caspian water evaporators located on the eastern coast of the Caspian Sea. Engineering realization of this scenario needs only the construction of the drainage system for the runoff of Caspian waters to the natural evaporators, between which Kara-Bogaz-Gol is the functioning evaporator. This paper shows that realization of this scenario allows the rescue of the Aral Sea and normalization of the water balance in Central Asia. Under this, as the simulation modeling results show, there exist different versions of the scenario depending on the area of evaporators and restrictions for the runoff of Amu Darya and Syr Darya waters to the irrigation systems. Calculation results show that the Aral Sea could be restored within 90–240 years depending on the scenario versions. With only Kara-Bogaz-Gol as the evaporator, the Aral Sea cannot be restored within a century. Additionally, if the anthropogenic runoff of river waters was decreased by 10 percent, the Aral Sea would be restored over about 90 years. Possible versions of the recovery scenario are discussed and assessed.
A Multilevel Mapping Strategy to Calculate the Information Content of Remotely Sensed Imagery
Authors: Fang Shimin , Zhou Xiaoguang , Zhang Jing
Published: October 2019

Considering the multiscale characteristics of the human visual system and any natural scene, the spatial autocorrelation of remotely sensed imagery, and the multilevel spatial structure of ground targets in remote sensing images, an information-measurement approach based on a single-level geometrical mapping model can only reflect partial feature information at a single level (e.g., global statistical information and local spatial distribution information). The single mapping model cannot validly characterize the information of the multilevel and multiscale features of the spatial structures inherent in remotely sensed images. Additionally, the validity, practicability, and application range of the results of single-level mapping models are greatly limited in practical applications. In this paper, we present the multilevel geometrical mapping entropy (MGME) model to evaluate the information content of related attribute characteristics contained in remotely sensed images. Subsequently, experimental images with different types of objects, including reservoir area, farmland, water area (i.e., water and trees), and mountain area, were used to validate the performance of the proposed method. Experimental results show that the proposed method can not only reflect the difference in the information of images in terms of spectrum features, spatial structural features, and visual perception but also eliminates the inadequacy of a single-level mapping model. That is, the multilevel mapping strategy is feasible and valid. Additionally, the vector set of the MGME method and its standard deviation (Std) value can be used to further explore and study the spatial dependence of ground scenes and the difference in the spatial structural characteristics of different objects.
Termite-Induced Injuries to Maize and Baby Corn under Organic and Conventional Farming Systems in the Central Highlands of Kenya
Authors: Anyango John J. , Bautze David , Fiaboe Komi K. M. , Lagat Zipporah O. , Muriuki Anne W. , Stöckli Sibylle , Onyambu Gladys K. , Musyoka Martha W. , Karanja Edward N. , Adamtey Noah
Published: October 2019

Termite-induced injuries to maize and baby corn were evaluated in on-going comparison experiments on organic and conventional farming systems at two trial sites in the Central Highlands of Kenya (Chuka and Thika). The farming systems were established in 2007 at two input levels: Low input level, representing subsistence farming (Conv-Low, Org-Low) and high input level, representing commercial farming (Conv-High, Org-High). Termite-induced injuries to maize and baby corn, such as tunneling the stem or lodging the whole plant were assessed over two cropping seasons. The lodging occurred exclusively at Thika. It first became apparent in the Org-Low system, with most of lodging occurring during the vegetative stage. Baby corn grown under high input systems showed increasing lodging from the late vegetative crop stage and peaked before the final harvest. Tunneling was recorded at both sites, but was generally below 5%, with no significant differences between the farming systems. Overall, the injury patterns caused by termites appear to be a function of the plant growth stage, termite colony activities, trial site, and the types and levels of fertilizer input. Thus, the management practice used in each farming system (organic or conventional) might have greater influence on crop injuries than the type of farming system itself or the termite abundance within each system.
Three-Dimensional (3D) Vertical Resistive Random-Access Memory (VRRAM) Synapses for Neural Network Systems
Authors: Sun Wookyung , Choi Sujin , Kim Bokyung , Park Junhee
Published: October 2019

Memristor devices are generally suitable for incorporation in neuromorphic systems as synapses because they can be integrated into crossbar array circuits with high area efficiency. In the case of a two-dimensional (2D) crossbar array, however, the size of the array is proportional to the neural network’s depth and the number of its input and output nodes. This means that a 2D crossbar array is not suitable for a deep neural network. On the other hand, synapses that use a memristor with a 3D structure are suitable for implementing a neuromorphic chip for a multi-layered neural network. In this study, we propose a new optimization method for machine learning weight changes that considers the structural characteristics of a 3D vertical resistive random-access memory (VRRAM) structure for the first time. The newly proposed synapse operating principle of the 3D VRRAM structure can simplify the complexity of a neuron circuit. This study investigates the operating principle of 3D VRRAM synapses with comb-shaped word lines and demonstrates that the proposed 3D VRRAM structure will be a promising solution for a high-density neural network hardware system.
Temperature, Pressure, and Velocity Influence on the Tribological Properties of PA66 and PA46 Polyamides
Authors: Lates Mihai Tiberiu , Velicu Radu , Gavrila Cornel Catalin
Published: October 2019

The tribological properties of PA66, PA46, and PTFE-mixed PA46 were investigated. The tests were achieved on a pin-on-disc tribometer. Before tests with different sets of parameters, a running-in-type test (with constant parameters) was performed for all the materials, under lubricated and dry conditions. The tests parameters were variable referring on load, velocity, and temperature. The results are referring on the value of the wear developed during the run-in period and on the variation of friction coefficient with the testing parameters. The results show that the PTFE-mixed PA46 polyamide has better tribological properties than the PA66 and the PA46 polyamide.
Avoidance of Interaction between Impression Materials and Tooth Surface Treated for Immediate Dentin Sealing: An In Vitro Study
Authors: Sinjari Bruna , D’Addazio Gianmaria , Murmura Giovanna , Di Vincenzo Giorgio , Semenza Mario , Caputi Sergio , Traini Tonino
Published: October 2019

Immediate dentin sealing (IDS) is an advantageous approach for realizing adhesive restorations, but it interferes with the polymerization of impression material due to the oxygen-inhibition layer (OIL), which leaves residues of impression material on the teeth. The aim of this study is to identify a clinical surface cleaning protocol after IDS in order to achieve defect-free impressions. Sixty extracted human teeth were cut to expose fresh dentin and the IDS protocol was performed. Samples were divided into six groups where different surface cleaning protocols were made before taking impressions: G1S and G1P groups, IDS and silicone (S) or polyether (P) impressions; G2S and G2P, treatment with prophy paste and impressions; G3S and G3P, final cleaning phase with surfactant agent and impressions. Teeth were evaluated with a scanning electron microscope to identify the areas (expressed in mm2) where residual impression material was present. The results demonstrate a reduction of residues in the G2 groups and the total disappearance in G3 groups with statistically significant differences between them. Superficial cleaning protocols with the prophy paste and surfactant agent lead to the elimination of the interaction with impression materials and OIL. These results suggest a safe clinical protocol for obtaining defect-free impressions after IDS.
A Review on the Carbonation and Chloride Penetration Resistance of Structural Lightweight Aggregate Concrete
Authors: Bogas José Alexandre , Real Sofia
Published: October 2019

This paper presents a comprehensive review on structural lightweight aggregate concrete (SLWAC) durability. The main transport properties and degradation mechanisms of reinforced concrete are addressed, namely, carbonation and chloride attack. The influence of the main composition parameters, such as type of aggregate, type of binder and water/binder ratio, as well as the influence of cracking, are also analysed. Finally, the current knowledge of SLWAC’s service life prediction is assessed. Although the knowledge of SLWAC’s durability behaviour is still limited, investigation works performed either in laboratory or in real environments indicate that SLWAC can have similar to better durability performance than normal weight concrete, especially when the same strength level is considered. The importance of the quality of the paste over the characteristics of the lightweight aggregates is highlighted. Durability standardization regarding SLWAC is still insufficient and is one of the main gaps of current knowledge. The objective of this review is to foster a better understanding on the durability and service life prediction of SLWAC, contributing to a greater confidence in using this type of concrete.
A Heterothermic Kinetic Model of Hydrogen Absorption in Metals with Subsurface Transport
Authors: Ono Shunsuke , Uchikoshi Takeru , Hayashi Yusuke , Kitagawa Yuta , Yeh George , Yamaguchi Eiichi , Tanabe Katsuaki
Published: October 2019

A versatile numerical model for hydrogen absorption into metals was developed. Our model addresses the kinetics of surface adsorption, subsurface transport (which plays an important role for metals with active surfaces), and bulk diffusion processes. This model can allow researchers to perform simulations for various conditions, such as different material species, dimensions, structures, and operating conditions. Furthermore, our calculation scheme reflects the relationship between the temperature changes in metals caused by the heat of adsorption and absorption and the temperature-dependent kinetic parameters for simulation precision purposes. We demonstrated the numerical fitting of the experimental data for various Pd temperatures and sizes, with a single set of kinetic parameters, to determine the unknown kinetic constants. Using the developed model and determined kinetic constants, the transitions of the rate-determining steps on the conditions of metal-hydrogen systems are systematically analyzed. Conventionally, the temperature change of metals during hydrogen adsorption and absorption has not been a favorable phenomenon because it can cause errors when numerically estimating the hydrogen absorption rates. However, by our calculation scheme, the experimental data obtained under temperature changing conditions can be positively used for parameter fitting to efficiently and accurately determine the kinetic constants of the absorption process, even from a small number of experimental runs. In addition, we defined an effectiveness factor as the ratio between the actual absorption rate and the virtually calculated non-bulk-diffusion-controlled rate, to evaluate the quantitative influence of each individual transport process on the overall absorption process. Our model and calculation scheme may be a useful tool for designing high-performance hydrogen storage systems.
Lorentz Force Actuated Tunable-Focus Liquid Lens
Authors: Van Grinsven Kari , Ousati Ashtiani Alireza , Jiang Hongrui
Published: October 2019

Tunable-focus liquid lenses provide focal length tuning for optical systems, e.g., cameras, where physical movement of rigid lenses are not an option or not preferable. In this work we present a magnetically actuated liquid lens utilizing the Lorentz force to vary the focal length as the current through the system is varied. The resulting lens can operate as both a diverging and a converging lens depending on the direction of current applied and has a large range of focal lengths, from −305 mm to –111 mm and from 272 mm to 146 mm. We also characterized the aberrations of the lens during the actuation with a Shack–Hartmann wavefront sensor, and utilized the lens for imaging, during which we measured a resolution of 7.13 lp/mm.
Evolution of Antibiotic Resistance of Coagulase-Negative Staphylococci Isolated from Healthy Turkeys in Egypt: First Report of Linezolid Resistance
Authors: Moawad Amira A. , Hotzel Helmut , Awad Omnia , Roesler Uwe , Hafez Hafez M. , Tomaso Herbert , Neubauer Heinrich , El-Adawy Hosny
Published: October 2019

Coagulase-negative staphylococci (CoNS) are gaining much attention as causative agents of serious nosocomial infections in humans. This study aimed to determine the prevalence and phenotypic antimicrobial resistance of CoNS as well as the presence of resistance-associated genes in CoNS isolated from turkey farms in Egypt. Two hundred and fifty cloacal swabs were collected from apparently healthy turkeys in Egypt. Suspected isolates were identified by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF MS). The susceptibility testing of CoNS isolates against 20 antimicrobial agents was performed using the broth microdilution test. The presence of resistance-associated genes like mecA, vanA, blaZ, erm(A), erm(B), erm(C), aac-aphD, optrA, valS, and cfr was determined. Thirty-nine CoNS were identified. All isolates were phenotypically resistant to trimethoprim/sulfamethoxazole, penicillin, ampicillin, and tetracycline. The resistance rates to erythromycin, chloramphenicol, oxacillin, daptomycin, and tigecycline were 97.4%, 94.9%, 92.3%, 89.7%, and 87.2%, respectively. Thirty-one isolates were resistant to linezolid (79.5%). Low resistance rate was detected for both imipenem and vancomycin (12.8%). The erm(C) gene was identified in all erythromycin phenotypically resistant isolates, whereas two resistant isolates possessed three resistance-conferring genes erm(A), erm(B), and erm(C). The cfr and optrA genes were detected in 11 (35.5%) and 12 (38.7%) of the 31 linezolid-resistant isolates. The mecA, aac-aphD, and blaZ genes were identified in 22.2%, 41.9%, and 2.6% of phenotypically resistant isolates to oxacillin, gentamicin, and penicillin, respectively. This is the first study revealing the correlation between linezolid resistance and presence of cfr and optrA genes in CoNS isolates from Egypt, and it can help to improve knowledge about the linezolid resistance mechanism.
Levels of the Thiocyanate in the Saliva of Tobacco Smokers in Comparison to e-Cigarette Smokers and Nonsmokers Measured by HPLC on a Phosphatidylcholine Column
Authors: Flieger Jolanta , Kawka Justyna , Tatarczak-Michalewska Małgorzata
Published: October 2019

The aim of the study was to estimate the thiocyanate levels in saliva of cigarette smokers in comparison to e-cigarette smokers and nonsmokers. To improve our understanding of the influence of smoking on the oral level of thiocyanate, we conducted an assessment of human saliva, in 24 individuals (eight tobacco smokers, eight e-cigarette smokers, and eight nonsmokers). High-Performance Liquid Chromatography with ultraviolet detection (HPLC-UV) using a unique phosphatidylcholine column was applied in this assay. Thiocyanate ion was detected directly by its absorbance at 210 nm. The method presents a new application of the IAM (Immobilized Artificial Membrane) column for quantification of inorganic anions. The whole process meets the criteria of green chemistry because it was carried out without the use of organic solvents. For compensating matrix effects, an eight-point standard addition protocol was used to quantify the thiocyanate level in saliva samples. The calibration graphs were linear in the range of 5–100 mg L−1 with a correlation coefficient higher than 0.99. The thiocyanate concentrations in the saliva of tobacco smokers, e-cigarette smokers, and nonsmokers were found in the range of 121.25–187.54 mg L−1, 121.24–244.11 mg L−1, 33.03–79.49 mg L−1, respectively. The present study indicates an obvious statistically significant elevation in salivary thiocyanate level in tobacco smokers in comparison to nonsmokers. The phosphatidylcholine-based stationary phase proved to be suitable for the detection and quantification of the thiocyanate ion. The salivary thiocyanate levels in e-cigarette smokers were not significantly different in comparison to tobacco smokers but higher if compared to nonsmokers. The criterion for statistical significance was p < 0.05.
Effects of Olive and Pomegranate By-Products on Human Microbiota: A Study Using the SHIME® In Vitro Simulator
Authors: Giuliani Camilla , Marzorati Massimo , Daghio Matteo , Franzetti Andrea , Innocenti Marzia , Van de Wiele Tom , Mulinacci Nadia
Published: October 2019

Two by-products containing phenols and polysaccharides, a “pâté” (OP) from the extra virgin olive oil milling process and a decoction of pomegranate mesocarp (PM), were investigated for their effects on human microbiota using the SHIME® system. The ability of these products to modulate the microbial community was studied simulating a daily intake for nine days. Microbial functionality, investigated in terms of short chain fatty acids (SCFA) and NH4+, was stable during the treatment. A significant increase in Lactobacillaceae and Bifidobacteriaceae at nine days was induced by OP mainly in the proximal tract. Polyphenol metabolism indicated the formation of tyrosol from OP mainly in the distal tract, while urolithins C and A were produced from PM, identifying the human donor as a metabotype A. The results confirm the SHIME® system as a suitable in vitro tool to preliminarily investigate interactions between complex botanicals and human microbiota before undertaking more challenging human studies.
Lectin-Based Method for Deciphering Human Milk IgG Sialylation
Authors: Lis-Kuberka Jolanta , Królak-Olejnik Barbara , Berghausen-Mazur Marta , Orczyk-Pawiłowicz Magdalena
Published: October 2019

In light of the immunoprotective function of human milk and the incontestable impact of IgG glycosylation on its immune functions, characterization of the sialylation profile of human milk IgG is needed. Lectins as a molecular probe were applied in lectin-IgG-ELISA to analyze the sialylation and galactosylation pattern of skim milk IgG of mothers who delivered at term and prematurely. Well-defined biotinylated lectins were used: Maackia amurensis II (MAA II), Sambucus nigra (SNA), Ricinus communis I (RCA I), and Griffonia simplicifolia II (GSL II) specific to α2,3-Neu5Ac, α2,6-Neu5Ac, Gal(β1,4)GlcNAc, and agalactosylated glycans, respectively. The sialylation pattern of milk IgG differs qualitatively and quantitatively from maternal plasma IgG and is related to lactation stage and perinatal risk factors. Expression of MAA-, SNA-, and GSL-reactive glycotopes on term milk IgG showed a positive correlation with milk maturation from days 1 to 55. Preterm birth was associated with an increase of MAA-reactive and a decrease of RCA-reactive IgG glycotopes. Moreover, higher SNA- and GSL-reactive and lower RCA-reactive glycoform levels of milk IgG were associated with infection of lactating mothers. Application of a specific and simple method, lectin-IgG-ELISA, reveals the sialylation pattern of milk IgG over milk maturation. However, further investigations are needed in this area.
Ivalin Induces Mitochondria-Mediated Apoptosis Associated with the NF-κB Activation in Human Hepatocellular Carcinoma SMMC-7721 Cells
Authors: Han Zhuo , Liu Fang-yuan , Lin Shi-qi , Zhang Cai-yun , Ma Jia-hui , Guo Chao , Jia Fu-juan , Zhang Qian , Xie Wei-dong , Li Xia
Published: October 2019

Ivalin, a natural compound isolated from Carpesium divaricatum, showed excellent microtubule depolymerization activities among human hepatocellular carcinoma in our previous work. Here, we investigated its functions on mitochondria-mediated apoptosis in hepatocellular carcinoma SMMC-7721 cells. DAPI (4′,6-diamidino-2-phenylindole) staining, annexin V-fluorexcein isothiocyanate (FITC) apoptosis detection, and western blotting were applied to explore the apoptotic effect of Ivalin. Next, the induction effect of Ivalin on the mitochondrial pathway was also confirmed via a series of phenomena including the damage of mitochondria membrane potential, mitochondria cytochrome c escape, cleaved caspase-3 induction, and the reactive oxygen species generation. In this connection, we understood that Ivalin induced apoptosis through the mitochondrial pathway and the overload of reactive oxygen species. Furthermore, we found that the activation of nuclear factor-κB (NF-κB) and subsequent p53 induction were associated with the apoptotic effect of Ivalin. These data confirmed that Ivalin might be a promising pro-apoptotic compound that can be utilized as a potential drug for clinical treatment.
Power Dynamics in 21st-Century Food Systems
Authors: Swinburn Boyd
Published: October 2019

Food systems are central to our very planetary existence, yet they are not fit for purpose in the 21st century because of the enormous damage they do to the environment and human health. Transforming food systems to optimize human health, ecological health, social equity and economic prosperity will require major changes in power dynamics between players to shift the status quo. The purpose of this paper is to assess these power dynamics and the opportunities for the Great Intergenerational Food Transformation (GIFT)—how this current generation in power can transform food systems within one generation for future generations. The current ‘policy inertia’ preventing food policy action is due to the strong opposition from the commercial food sector, the reluctance of governments to regulate and tax, and the lack of demand for policy action from civil society. The translation of the market power of large food industries into self-serving political power is the dominant barrier to action. The most promising systemic lever for holding the major power players (governments and food industries) to account for the GIFT is increasing the power of civil society (including non-governmental organizations (NGOs), researchers, professional societies and the public) to demand changes in the political economy of food.