bluuebunny/crossref_metadata_2025 huggingface dataset:
Particle Size Imbalance Index from Compositional Analysis to Evaluate Cereal Sustainability for Arid Soils in Eastern Algeria
Authors: Zaaboubi Siham , Khiari Lotfi , Abdesselam Salah , Gallichand Jacques , Kebede Fassil , Kerrache Ghouati
Published: July 2020

For homogeneous fertilization and crop management practices, this work hypothesized that texture could influence cereal yield, particularly in dry regions. Particle size analysis could help improve knowledge of the soil-plant relationship to obtain favorable conditions for better yield. The objective of this work is to develop a single granulometric index for durum wheat (Triticum durum) that is well correlated with yield. For this purpose, 350 independent samples of cereal soils from eastern Algeria were taken and the recorded yields were linked to these samples. The cutoff yield, which separates sub-populations with acceptable yield from those with less acceptable yield, was determined from the inflection point of the cumulative variance ratio functions related to yield by the Richards’ equation. The result obtained is 2.0 Mg.ha−1, with a theoretical critical chi-square value of 4.2, close to 4.6, which is the critical value of r2granulo as obtained by the Cate-Nelson procedure. The five-granulometric indices were found to be symmetrical around zero as follows: ±0.83 for clay (IC), ±1.73 for fine silt (IFL), ±0.31 for coarse silt (ICL), ±0.44 for fine sand (IFS), and ±1.30 for coarse sand (ICS). The two fractions that most influence the textural imbalance are fine silt (IFL) and coarse sand (ICS), with a contribution of 41% and 37%, respectively. The critical single imbalance index r g r a n u l o 2 can be used for determining cereal suitability for soils in the arid region of eastern Algeria. The lower the   r g r a n u l o 2 is, the better the soil for cereal crops.
Evaluation of Deficit Irrigation and Water Quality on Production and Water Productivity of Tomato in Greenhouse
Authors: Chand Jeet , Hewa Guna , Hassanli Ali , Myers Baden
Published: July 2020

This study deals with the evaluation of the effects of deficit irrigation (DI) and water quality (WQ) on the vegetative and productive response of greenhouse-grown tomatoes (Lycopersicon esculentum Mill. cv. Izmir). A pot-based experiment was carried out over two growing seasons. Three WQ: (groundwater, recycled wastewater and a mix of both) were applied in four irrigation scenarios which targeted soil moisture content (SMC) maintaining at 60%, 70%, 80% and 100% of field capacity (FC). Results showed that both DI and WQ had significant effects on crop development, yield and water productivity. The highest values of plant height (186.0 ± 0.58 cm) and stem diameter (23.40 ± 0.02 mm) were found at 100% FC (control). Total yield ranged from 2.33 ± 0.03 kg/plant (60% FC) to 4.05 ± 0.06 kg/plant (control). However, mild water stress (SMC maintaining at 80% FC) showed a positive effect on irrigation water use efficiency (IWUE) without significant yield reduction compared to control. IWUE was at its maximum (31.77 ± 0.47 kg/m3) at 80% FC. A DI regime based on 80% FC could be an efficient irrigation strategy particularly in water-limiting condition. Recycled wastewater was superior among the three WQ for achieving a better crop growth, yield and water productivity at same DI level.
Physicochemical and Nutritional Characterization of Winemaking Lees: A New Food Ingredient
Authors: Sancho-Galán Pau , Amores-Arrocha Antonio , Jiménez-Cantizano Ana , Palacios Víctor
Published: July 2020

Wine lees are defined as the sediment formed at the bottom of the tank or barrel after wine alcoholic fermentation. They have a heterogeneous composition and currently constitute 6% of the byproducts generated by each ton of wine grapes. However, it is the most under-researched of all the byproducts of the winemaking process. Therefore, with the aim of highlighting this byproduct, a physicochemical and nutritional characterization of winemaking lees from three different wine making processes (white, rosé, and red winemaking) was carried out. In addition, the technological properties of these winemaking lees were also analyzed. The lees analyzed in this research demonstrated an interesting nutritional and heterogeneous composition. Moreover, wine lees showed high values of emulsifying capacity. Thus, winemaking lees could be considered, in a preliminary way, as a new ingredient to be included in new food formulations.
Biochemical Response of Oakleaf Lettuce Seedlings to Different Concentrations of Some Metal(oid) Oxide Nanoparticles
Authors: Jurkow Rita , Sękara Agnieszka , Pokluda Robert , Smoleń Sylwester , Kalisz Andrzej
Published: July 2020

Nanoparticles (NPs) significantly modify the physiological functions and metabolome of plants. The purpose of the study was to investigate the effect of CeO2, Fe2O3, SnO2, TiO2, and SiO2 nanoparticles, applied in foliar spraying of oakleaf lettuce at concentrations 0.75% to 6%, on the antioxidant enzyme activity and content of non-enzymatic antioxidants, chlorophyll pigments, fresh weight (FW) and dry weight (DW). It was found that 3% Fe2O3-NPs caused a 27% decrease in fresh weight compared to control plants. Fe2O3-NPs caused an increase in dry weight (g 100 g−1 FW) when compared to the control for all concentrations, but total DW (g per plant) was similar for all NPs treatments. Significant increases in chlorophyll a + b content after treatment with 1.5% and 6% SiO2-NPs, 3% Fe2O3-NPs, and 3% TiO2-NPs were noted. Fe2O3-NPs caused a significant increase in the activity of ascorbate peroxidase, guaiacol peroxidase, and catalase (only for 3% Fe2O3-NPs). SnO2-NPs decreased ascorbate peroxidase (APX) and guaiacol peroxidase (GPOX) activity (for all tested concentrations) but increased catalase (CAT) activity when a 3% suspension of these NPs was applied. The level of glutathione (GSH) increased due to application of all metal/metalloid oxides, with the exception of SnO2-NPs. When all concentrations of TiO2-NPs were applied, L-ascorbic acid increased significantly, as well as increasing at higher concentrations of SiO2-NPs (3% and 6%) and at 0.75% and 3% Fe2O3-NPs. SiO2-NPs and TiO2-NPs significantly elevated the carotenoid and total phenolic content in treated plants compared to the control. The total antioxidant capacity of plants treated with 3% CeO2-NPs was almost twice as high as that of the control.
Deciphering the Role of Stay-Green Trait to Mitigate Terminal Heat Stress in Bread Wheat
Authors: Latif Sadia , Wang Liping , Khan Jahangir , Ali Zeshan , Sehgal Sunish Kumar , Babar Md Ali , Wang Jianping , Quraishi Umar Masood
Published: July 2020

The present study aimed to reveal the impact of the stay-green trait in bread wheat under terminal heat stress. Field experiments (early and late sowing; for two consecutive years) were conducted to investigate the influence of terminal heat stress on the morpho-physiological traits in different stay-green types i.e., non-stay-green, moderately non-stay-green, moderately stay-green, and stay-green. In addition, the greenhouse experiment was performed to dissect the stay-green trait in functional stay-green, non-functional stay-green, and non-stay-green genotypes. The results of the field experiments confirmed that genotypes exhibiting the stay-green trait have a significantly high chlorophyll content, normalized difference vegetative index, grain yield, biological yield, kernel weight, and low canopy temperature under control and heat stress conditions. In the greenhouse experiment, functional stay-green and non-functional stay-green genotypes showed a high chlorophyll content and photochemical efficiency, whereas biological yield and grain yield showed a significant relation with the functional stay-green genotype under control and terminal heat stress treatments. The sequencing and expression analysis of chlorophyllide a oxygenase (CaO), light-harvesting complex (Cab), stay-green (SGR), and red chlorophyll catabolite reductase (RCCR) in functional stay-green, non-functional stay-green, and non-stay-green genotypes revealed variations in the exons of CaO and RCCR; and significant difference in the regulation of CaO and Cab at 7 days after anthesis under terminal heat stress. This study confirms that genotypes displaying the stay-green trait can aid wheat breeders to cope with increasing temperature in the impending decades.
Supplementary LED Interlighting Improves Yield and Precocity of Greenhouse Tomatoes in the Mediterranean
Authors: Paucek Ivan , Pennisi Giuseppina , Pistillo Alessandro , Appolloni Elisa , Crepaldi Andrea , Calegari Barbara , Spinelli Francesco , Cellini Antonio , Gabarrell Xavier , Orsini Francesco , Gianquinto Giorgio
Published: July 2020

In Northern Europe, the use of light–emitting diodes (LEDs) is widely adopted in protected horticulture, enabling to enhance plant growth by ensuring needed radiative fluxes throughout seasons. Contrarily, the use of artificial lighting in Mediterranean greenhouse still finds limited applications. In this study, the effects of supplemental LED interlighting on vegetative development, fruit growth, yield, and fruit quality of high-wire tomato plants (Solanum lycopersicum L. cv. ‘Siranzo’) during spring and summer season were addressed in a hydroponic greenhouse in Italy. Plants were either grown under natural solar radiation (control), or by adding supplemental LED interlighting. LED treatment featured red (R) and blue (B) light (RB ratio of 3) and a photosynthetic photon flux density of 170 µmol m−2 s−1 for 16 h d−1. Supplemental LED interlighting enhanced yield as a result of increased fruit weight and dimension. While no effects on soluble solids content and fruit color at harvesting were observed, supplemental LED interlighting accelerated ripening by one week in spring and two weeks in summer and this also resulted in increased cumulated productivity (+16%) as compared to control treatment. Overall, supplemental LED interlighting can represent a feasible technology for tomato greenhouse production also in the Mediterranean region.
The Contribution of Root Turnover on Biological Nitrification Inhibition and Its Impact on the Ammonia-Oxidizing Archaea under Brachiaria Cultivations
Authors: Nakamura Satoshi , Saliou Papa Sarr , Takahashi Minako , Ando Yasuo , Subbarao Guntur Venkata
Published: July 2020

Aims: Biological nitrification inhibition (BNI) has been reported as an emerging technology to control soil nitrifier activity for effective N-utilization in cropping systems. Brachiaria have been reported to suppress nitrifier populations by releasing nitrification inhibitors from roots through exudation. Substantial BNI activity has been reported to be present in the root tissues of Brachiaria grasses; however, BNI contribution, such as root turnover, has not been addressed in previous studies. The present study aimed to clarify the contribution of root turnover on BNI under Brachiaria cultivations and its impact on nitrifier populations. Methods: We monitored root growth, changes in ammonia-oxidizing bacteria (AOB) and ammonia-oxidizing archaea (AOA) numbers, nitrification rate, and available nitrogen (N) content under seven germplasm lines of Brachiaria, for 18 months with seasonal profile sampling. Results: Brachiaria cultivation increased soil NH4+-N, available N, and total soil carbon levels. Though we did not find any correlation between the changes in AOB populations and potential nitrification, the potential nitrification rate decreased when AOA populations decreased. Multiple regression analysis indicated that BNI substances from root tissue turnover had a significant contribution to the BNI function in the field. Conclusion Results indicated that the inhibitory effect of BNI was mostly evident in AOA, and not in AOB, in this study. Brachiaria cvs. ‘Marandu’, ‘Mulato’, and ‘Tupy’ had the most substantial BNI effect among the seven cultivars evaluated. The estimated total BNI activities and available N content of root tissue explained the observed nitrification inhibition. In conclusion, the release of BNI substances through plant decomposition contributes to the decrease in the abundance of AOA, and thus the inhibition of nitrification under Brachiaria cultivation.
Role of Trichoderma aggressivum f. europaeum as Plant-Growth Promoter in Horticulture
Authors: Sánchez-Montesinos Brenda , Diánez Fernando , Moreno-Gavíra Alejandro , Gea Francisco J. , Santos Mila
Published: July 2020

The main objective of this study was to determine the capacity of Trichoderma aggressivum f. europaeum to promote pepper and tomato seedling growth compared to that of T. saturnisporum, a species recently characterised as a biostimulant. Consequently, in vitro seed germination and seedling growth tests were performed under commercial plant nursery conditions. Additionally, the effects of different doses and a mixture of both species on seedling growth under plant nursery and subsequently under greenhouse conditions were determined. Furthermore, mass production of spores was determined in different substrates, and their siderophore and indole acetic acid production and phosphate (P) solubilisation capacity were also determined. Direct application of Trichoderma aggressivum f. europaeum to seeds in vitro neither increases the percentage of pepper and tomato seed germination nor improves their vigour index. However, substrate irrigation using different doses under commercial plant nursery conditions increases the quality of tomato and pepper seedlings. Tomato roots increased by 66.66% at doses of 106 spores per plant. Applying T. aggressivum f. europaeum or T. saturnisporum under plant nursery conditions added value to seedlings because their growth-promoting effect is maintained under greenhouse conditions up to three months after transplantation. The combined application of the two species had no beneficial effect in relation to that of the control. The present study demonstrates the biostimulant capacity of T. aggressivum f. europaeum in pepper and tomato plants under commercial plant nursery and greenhouse conditions.
Which Agronomic Practices Increase the Yield and Quality of Common Bean (Phaseolus vulgaris L.)? A Systematic Review Protocol
Authors: Ntatsi Georgia , Karkanis Anestis , Tran Fanny , Savvas Dimitrios , Iannetta Pietro P. M.
Published: July 2020

The common bean (Phaseolous vulgaris L.) is a grain legume functionally characterized by its capacity for symbiotic of biological nitrogen fixation. As such, it does not demand the application of synthetic nitrogenous fertilizer and can offer environmental benefits as part of holistic cropping systems. While common bean commodities are highly nutritious, commercial cultivation of this crop is declining in already-industrialized countries. However, recent interest of consumers towards diets that benefit environmental and personal health has rekindled commercial interest in legumes, including the common bean. The aim of this protocol is to identify agronomic practices that are capable of increasing the yield and quality of the common bean for use as food. To address this research question, published literature will be screened for inclusion on the basis of defined eligibility criteria to ensure data sources are selected in an objective and consistent manner. Consistency checks will be carried out for the title, abstract and full texts of the literature collated. The output is expected to be a summary of the knowledge available to maximize the productivity and quality of the common bean as food. This anticipated synthesis will be of utility for a wide range of value-chain stakeholders from farmers and consumers, to research scientists and policy makers.
Response of Broccoli Transplants to LED Light during Short and Long-Term Storage
Authors: Wojciechowska Renata , Kunicki Edward , Długosz-Grochowska Olga , Kołton Anna
Published: July 2020

In broccoli production a big challenge is preparation of seedlings, which must be delivered during a strictly defined period to vegetable producers that are often in distant places. The goal of the present study was to investigate the response of 5-week old broccoli transplants cv. Parthenon F1 to 2 and 6 weeks of storage at 4 °C under two LED light spectra (L1: 29% red 660 nm + 14% red 630 nm + 42% blue 250 nm + 15% green 520 nm and L2: 38% red 660 nm + 18% red 630 nm +26% blue 450 nm + 15% green 520 nm + 3% UV-A 330 nm; photoperiod 16/8 h day/night and PPFD 30 ± 10 µmol m−2 s−1) and darkness. Control 5-week-old seedlings were not stored. Light treatment improved the morphology and physiological parameters of seedlings. The yield of broccoli from control seedlings was similar to that obtained after L2 treatment, regardless of seedling storage duration. The most promising effects were obtained by adding 3% UV-A radiation to the lighting spectrum. The results are applicable to the transport of broccoli transplants to remote locations or storage for several weeks, in cases where it is necessary to delay planting.
Plastic-Covered Ridge-Furrow Planting Combined with Supplemental Irrigation Based on Measuring Soil Moisture Promotes Wheat Grain Yield and Irrigation Water Use Efficiency in Irrigated Fields on the Loess Plateau, China
Authors: Luo Jian , Liang Zimeng , Xi Luoyan , Liao Yuncheng , Liu Yang
Published: July 2020

The purpose of this study was to investigate whether combining plastic-covered ridge and furrow planting (RF) and supplemental irrigation based on measuring soil moisture (SIMSM) can increase the grain yield and water use efficiency (WUE) of wheat (Triticum aestivum L.) in irrigated fields of Loess Plateau, China. In 2016–2018, the experiment was conducted at Doukou experimental farm (34°36′ N, 108°52′ E) with two plant systems (RF and traditional planting (TF)) and three irrigation treatments (S1 and S2: SIMSM with a target relative soil water content of 85% and 100%, respectively). The results suggest that under the TF system, SIMSM decreased the grain yield and nitrogen utilization. The reason for this may be the local low precipitation. However, the combination of RF and S2 significantly increased the WUE, protein and wet gluten concentration in the grain. In addition, the grain yield of the RF plus S2 treatment was not significantly different than that of the traditional irrigation method. These results suggest that combining RF and SIMSM with a target relative soil water content of 100% is beneficial to the synergistic improvement of the wheat yield, the wheat quality, and the water and fertilizer use efficiency in irrigated fields on the Loess Plateau.
Effect of Oxytetracycline and Chlortetracycline on Bacterial Community Growth in Agricultural Soils
Authors: Santás-Miguel Vanesa , Arias-Estévez Manuel , Díaz-Raviña Montserrat , Fernández-Sanjurjo María José , Álvarez-Rodríguez Esperanza , Núñez-Delgado Avelino , Fernández-Calviño David
Published: July 2020

Toxicity on soil bacterial community growth caused by the antibiotics oxytetracycline (OTC) and chlortetracycline (CTC) was studied in 22 agricultural soils after 1, 8 and 42 incubation days. The leucine incorporation method was used with this aim, estimating the concentration of each antibiotic which caused an inhibition of 50% in bacterial community growth (log IC50). For OTC, the mean log IC50 was 2.70, 2.81, 2.84 for each of the three incubation times, while the values were 2.05, 2.22 and 2.47 for CTC, meaning that the magnitude of OTC toxicity was similar over time, whereas it decreased significantly for CTC with incubation time. In addition, results showed that the toxicity on bacterial community growth due to CTC is significantly higher than when due to OTC. Moreover, the toxicity on bacterial community growth due to both antibiotics is dependent on soil properties. Specifically, an increase in soil pH and silt content resulted in higher toxicity of both antibiotics, while increases in total organic carbon and clay contents caused decreases in OTC and CTC toxicities. The results also show that OTC toxicity can be well predicted by means of specific equations, using the values of pH measured in KCl and those of effective cation exchange capacity as input variables. CTC toxicity may be predicted (but with low precision) using pH measured in KCl and total organic carbon. These equations may help to predict the negative effects caused by OTC and CTC on soil bacteria using easily measurable soil parameters.
Biomechanical Properties and Agro-Morphological Traits for Improved Lodging Resistance in Ethiopian Teff (Eragrostis tef (Zucc.) Trottor) Accessions
Authors: Bayable Muluken , Tsunekawa Atsushi , Haregeweyn Nigussie , Ishii Takayoshi , Alemayehu Getachew , Tsubo Mitsuru , Adgo Enyew , Tassew Asaminew , Tsuji Wataru , Asaregew Fekremariam , Masunaga Tsugiyuki
Published: July 2020

Susceptibility to lodging is a major constraint on teff production in Ethiopia, but efforts to develop lodging-resistant cultivars have not been successful. We studied the mechanical properties of teff culms and associated agro-morphological traits in field experiments with 320 teff accessions at two sites in northwestern Ethiopia during the 2018 and 2019 growing seasons. The results showed significant variability in both mechanical properties and agro-morphological traits among accessions. Traits contributing to lodging resistance, such as internode diameter, pushing resistance, and base failure moment, were significantly positively correlated with each other and with plant height. Similarly, the correlation of those traits with lodging index was significant and positive. In contrast, tiller number showed a significant negative correlation with lodging index. The peduncle–panicle length, which generally accounted for 59% of the plant height, should be a target when breeding for semi-dwarfism. Root system development, which reached a depth of more than 1 m in tall and 57 cm in dwarf teff accessions, signifies the presence of genetic variabilities for future root lodging studies in teff, and it may also explain why teff performs well in drought-prone areas of Ethiopia. Breeding programs for lodging resistance might focus on accessions with good standing ability (high base failure moment) and introgression of stem strength with a semi-dwarf phenotype. Alternatively, selection for a large internode diameter, increased pushing resistance and base failure moment, and a reduced tiller number should be considered.
Wild and Cultivated Sunflower (Helianthus annuus L.) Do Not Differ in Salinity Tolerance When Taking Vigor into Account
Authors: Tran Vivian H. , Temme Andries A. , Donovan Lisa A.
Published: July 2020

Cultivated crops are expected to be less stress tolerant than their wild relatives, leading to efforts to mine wild relatives for traits to increase crop tolerance. However, empirical tests of this expectation often confound tolerance with plant vigor. We assessed whether wild and cultivated Helianthus annuus L. differed for salinity tolerance with 0 and 150 mM NaCl treatments. Salinity tolerance was assessed as the proportional reduction in biomass and as the deviation from expected performance based on vigor. Cultivated accessions had a greater proportional decline in biomass than wild accessions, but proportional decline was positively associated with vigor in both. Thus, wild and cultivated H. annuus did not differ for tolerance when variation in vigor was corrected for statistically. For traits potentially related to tolerance mechanisms, wild and cultivated accessions differed for elemental content and allocation of N, P, K, Mg, Ca, S, Na, Fe, Mn, B, Cu, and Zn for some tissues, biomass allocation, specific leaf area, and leaf succulence. However, these traits were generally unrelated to tolerance corrected for vigor. Osmotic adjustment was associated with tolerance corrected for vigor only in wild accessions where more osmotic adjustment was associated with greater tolerance. Our results for H. annuus suggest that efforts to use wild relatives to enhance crop abiotic stress tolerance will benefit from greater knowledge of traits related to plant growth responses decoupled from vigor, in order to get beyond potential growth-tolerance trade-offs.
Reactive Oxygen Species (ROS) Metabolism and Nitric Oxide (NO) Content in Roots and Shoots of Rice (Oryza sativa L.) Plants under Arsenic-Induced Stress
Authors: Solórzano Ernestina , Corpas Francisco J. , González-Gordo Salvador , Palma José M.
Published: July 2020

Arsenic (As) is a highly toxic metalloid for all forms of life including plants. Rice is the main food source for different countries worldwide, although it can take up high amounts of As in comparison with other crops, showing toxic profiles such as decreases in plant growth and yield. The induction of oxidative stress is the main process underlying arsenic toxicity in plants, including rice, due to an alteration of the reactive oxygen species (ROS) metabolism. The aim of this work was to gain better knowledge on how the ROS metabolism and its interaction with nitric oxide (NO) operate under As stress conditions in rice plants. Thus, physiological and ROS-related biochemical parameters in roots and shoots from rice (Oryza sativa L.) were studied under 50 μM arsenate (AsV) stress, and the involvement of the main antioxidative systems and NO in the response of plants to those conditions was investigated. A decrease of 51% in root length and 27% in plant biomass was observed with 50 μM AsV treatment, as compared to control plants. The results of the activity of superoxide dismutase (SOD) isozymes, catalase, peroxidase (POD: total and isoenzymatic), and the enzymes of the ascorbate–glutathione cycle, besides the ascorbate and glutathione contents, showed that As accumulation provoked an overall significant increase of most of them, but with different profiles depending on the plant organ, either root or shoot. Among the seven identified POD isozymes, the induction of the POD-3 in shoots under As stress could help to maintain the hydrogen peroxide (H2O2) redox homeostasis and compensate the loss of the ascorbate peroxidase (APX) activity in both roots and shoots. Lipid peroxidation was slightly increased in roots and shoots from As-treated plants. The H2O2 and NO contents were enhanced in roots and shoots against arsenic stress. In spite of the increase of most antioxidative systems, a mild oxidative stress situation appears to be consolidated overall, since the growth parameters and those from the oxidative damage could not be totally counteracted. In these conditions, the higher levels of H2O2 and NO suggest that signaling events are simultaneously occurring in the whole plant.
Ancient Homozygosity Segments in West African Djallonké Sheep Inform on the Genomic Impact of Livestock Adaptation to the Environment
Authors: Álvarez Isabel , Fernández Iván , Traoré Amadou , Pérez-Pardal Lucía , Menéndez-Arias Nuria A. , Goyache Félix
Published: July 2020

A sample of Burkina Faso Djallonké (West African Dwarf) sheep was analyzed to identify stretches of homozygous segments (runs of homozygosity; ROH) overlapping with ancient homozygosity-by-descent (HBD) segments. HBD segments were considered ancient if they were likely to be inherited from ancestors living from 1024 to 2048 generations ago, roughly coinciding with the time in which sheep entered into West Africa. It is hypothesized that such homozygous segments can inform on the effect of the sheep genome of human-mediated selection for adaptation to this harsh environment. PLINK analyses allowed to identify a total of 510 ROH segments in 127 different individuals that could be summarized into 124 different ROH. A total of 32,968 HBD segments were identified on 119 individuals using the software ZooRoH. HBD segments inherited from ancestors living 1024 and 2048 generations ago were identified on 61 individuals. The overlap between consensus ROH identified using PLINK and HBD fragments putatively assigned to generations 1024 and 2048 gave 108 genomic areas located on 17 different ovine chromosomes which were considered candidate regions for gene-annotation enrichment analyses. Functional annotation allowed to identify six statistically significant functional clusters involving 50 candidate genes. Cluster 1 was involved in homeostasis and coagulation; functional clusters 2, 3, and 6 were associated to innate immunity, defense against infections, and white blood cells proliferation and migration, respectively; cluster 4 was involved in parasite resistance; and functional cluster 5, formed by 20 genes, was involved in response to stress. The current analysis confirms the importance of genomic areas associated to immunity, disease resistance, and response to stress for adaptation of sheep to the challenging environment of humid Sub-Saharan West Africa.
Genetic Parameters and Genome-Wide Association Studies for Anti-Müllerian Hormone Levels and Antral Follicle Populations Measured After Estrus Synchronization in Nellore Cattle
Authors: Grigoletto Laís , Santana Miguel Henrique Almeida , Bressan Fabiana Fernandes , Eler Joanir Pereira , Nogueira Marcelo Fábio Gouveia , Kadarmideen Haja N. , Baruselli Pietro Sampaio , Ferraz José Bento Sterman , Brito Luiz F.
Published: July 2020

Reproductive efficiency plays a major role in the long-term sustainability of livestock industries and can be improved through genetic and genomic selection. This study aimed to estimate genetic parameters (heritability and genetic correlation) and identify genomic regions and candidate genes associated with anti-Müllerian hormone levels (AMH) and antral follicle populations measured after estrous synchronization (AFP) in Nellore cattle. The datasets included phenotypic records for 1099 and 289 Nellore females for AFP and AMH, respectively, high-density single nucleotide polymorphism (SNP) genotypes for 944 animals, and 4129 individuals in the pedigree. The heritability estimates for AMH and AFP were 0.28 ± 0.07 and 0.30 ± 0.09, and the traits were highly and positively genetically correlated (rG = 0.81 ± 0.02). These findings indicated that these traits can be improved through selective breeding, and substantial indirect genetic gains are expected by selecting for only one of the two traits. A total of 31 genomic regions were shown to be associated with AMH or AFP, and two genomic regions located on BTA1 (64.9–65.0 Mb and 109.1–109.2 Mb) overlapped between the traits. Various candidate genes were identified to be potentially linked to important biological processes such as ovulation, tissue remodeling, and the immune system. Our findings support the use of AMH and AFP as indicator traits to genetically improve fertility rates in Nellore cattle and identify better oocyte donors.
Antioxidative Potential of Red Deer Embryos Depends on Reproductive Stage of Hind as a Oocyte Donor
Authors: Korzekwa Anna J. , Kotlarczyk Angelika M. , Szczepańska Agata A. , Grzyb Martyna , Siergiej Alicja , Wocławek-Potocka Izabela
Published: July 2020

The aim was to compare the blastocyst stages of red deer embryos in respect of in vitro fertilization (IVF) efficiency, morphology, apoptotic and proliferative abilities, and antioxidative potential according to the reproductive status of hinds. We used three experimental groups, including the ovaries collected post mortem on the 4th and 13th days of the estrous cycle and during pregnancy (n = 18). After oocyte maturation, frozen-thawed epididymal semen was used for IVF. Blastocyst quality, apoptotic potential by determining the mRNA expression of BAX, BCL-2, OCT4, SOX2, and placenta-specific 8 gene (PLAC8), and antioxidative potential of blastocysts were evaluated by determining the mRNA expression of CuSOD, MnSOD, and GPX as well as the enzymatic activity of superoxide dismutase and reduced glutathione. The highest development rate of expanded blastocyst, mRNA expression of BCL-2, OCT4, SOX2, and PLAC8 and mRNA expression and enzymatic activity of the antioxidative factors increased (p < 0.05) in blastocysts developed from the oocytes collected on the 4th day, compared to those developed from the oocytes collected on the 13th day of the cycle and during pregnancy. Our study indicates that the 4th day of the estrous cycle is the most effective period for oocyte collection for IVF and embryo development in hinds, considering quality parameters and antioxidative potential of the blastocysts.
Phytochemical Composition and In Vitro Biological Activity of Iris spp. (Iridaceae): A New Source of Bioactive Constituents for the Inhibition of Oral Bacterial Biofilms
Authors: Hoang Lan , Beneš František , Fenclová Marie , Kronusová Olga , Švarcová Viviana , Řehořová Kateřina , Baldassarre Švecová Eva , Vosátka Miroslav , Hajšlová Jana , Kaštánek Petr , Viktorová Jitka , Ruml Tomáš
Published: July 2020

The inhibition and eradication of oral biofilms is increasingly focused on the use of plant extracts as mouthwashes and toothpastes adjuvants. Here, we report on the chemical composition and the antibiofilm activity of 15 methanolic extracts of Iris species against both mono-(Pseudomonas aeruginosa, Staphylococcus aureus) and multi-species oral biofilms (Streptococcus gordonii, Veillonella parvula, Fusobacterium nucleatum subsp. nucleatum, and Actinomyces naeslundii). The phytochemical profiles of Iris pallida s.l., Iris versicolor L., Iris lactea Pall., Iris carthaliniae Fomin, and Iris germanica were determined by ultra-high performance liquid chromatography-high-resolution tandem mass spectroscopy (UHPLC-HRMS/MS) analysis, and a total of 180 compounds were identified among Iris species with (iso)flavonoid dominancy. I. pallida, I. versicolor, and I. germanica inhibited both the quorum sensing and adhesion during biofilm formation in a concentration-dependent manner. However, the extracts were less active against maturated biofilms. Of the five tested species, Iris pallida s.l. was the most effective at both inhibiting biofilm formation and disrupting existing biofilms, and the leaf extract exhibited the strongest inhibitory effect compared to the root and rhizome extracts. The cytotoxicity of the extracts was excluded in human fibroblasts. The inhibition of bacterial adhesion significantly correlated with myristic acid content, and quorum sensing inhibition correlated with the 7-β-hydroxystigmast-4-en-3-one content. These findings could be useful for establishing an effective tool for the control of oral biofilms and thus dental diseases.
Functional Analysis of the Acinetobacter baumannii XerC and XerD Site-Specific Recombinases: Potential Role in Dissemination of Resistance Genes
Authors: Lin David L. , Traglia German M. , Baker Rachel , Sherratt David J. , Ramirez Maria Soledad , Tolmasky Marcelo E.
Published: July 2020

Modules composed of a resistance gene flanked by Xer site-specific recombination sites, the vast majority of which were found in Acinetobacter baumannii, are thought to behave as elements that facilitate horizontal dissemination. The A. baumannii xerC and xerD genes were cloned, and the recombinant clones used to complement the cognate Escherichia coli mutants. The complemented strains supported the resolution of plasmid dimers, and, as is the case with E. coli and Klebsiella pneumoniae plasmids, the activity was enhanced when the cells were grown in a low osmolarity growth medium. Binding experiments showed that the partially purified A. baumannii XerC and XerD proteins (XerCAb and XerDAb) bound synthetic Xer site-specific recombination sites, some of them with a nucleotide sequence deduced from existing A. baumannii plasmids. Incubation with suicide substrates resulted in the covalent attachment of DNA to a recombinase, probably XerCAb, indicating that the first step in the recombination reaction took place. The results described show that XerCAb and XerDAb are functional proteins and support the hypothesis that they participate in horizontal dissemination of resistant genes among bacteria.
The Antimicrobial Activity of Cannabinoids
Authors: Karas John A. , Wong Labell J. M. , Paulin Olivia K. A. , Mazeh Amna C. , Hussein Maytham H. , Li Jian , Velkov Tony
Published: July 2020

A post-antibiotic world is fast becoming a reality, given the rapid emergence of pathogens that are resistant to current drugs. Therefore, there is an urgent need to discover new classes of potent antimicrobial agents with novel modes of action. Cannabis sativa is an herbaceous plant that has been used for millennia for medicinal and recreational purposes. Its bioactivity is largely due to a class of compounds known as cannabinoids. Recently, these natural products and their analogs have been screened for their antimicrobial properties, in the quest to discover new anti-infective agents. This paper seeks to review the research to date on cannabinoids in this context, including an analysis of structure–activity relationships. It is hoped that it will stimulate further interest in this important issue.
Kinetic Fingerprinting Links Bacteria-Phage Interactions with Emergent Dynamics: Rapid Depletion of Klebsiella pneumoniae Indicates Phage Synergy
Authors: Loessner Holger , Schlattmeier Insea , Anders-Maurer Marie , Bekeredjian-Ding Isabelle , Rohde Christine , Wittmann Johannes , Pokalyuk Cornelia , Krut Oleg , Kamp Christel
Published: July 2020

The specific temporal evolution of bacterial and phage population sizes, in particular bacterial depletion and the emergence of a resistant bacterial population, can be seen as a kinetic fingerprint that depends on the manifold interactions of the specific phage–host pair during the course of infection. We have elaborated such a kinetic fingerprint for a human urinary tract Klebsiella pneumoniae isolate and its phage vB_KpnP_Lessing by a modeling approach based on data from in vitro co-culture. We found a faster depletion of the initially sensitive bacterial population than expected from simple mass action kinetics. A possible explanation for the rapid decline of the bacterial population is a synergistic interaction of phages which can be a favorable feature for phage therapies. In addition to this interaction characteristic, analysis of the kinetic fingerprint of this bacteria and phage combination revealed several relevant aspects of their population dynamics: A reduction of the bacterial concentration can be achieved only at high multiplicity of infection whereas bacterial extinction is hardly accomplished. Furthermore the binding affinity of the phage to bacteria is identified as one of the most crucial parameters for the reduction of the bacterial population size. Thus, kinetic fingerprinting can be used to infer phage–host interactions and to explore emergent dynamics which facilitates a rational design of phage therapies.
The Variability of Thymol and Carvacrol Contents Reveals the Level of Antibacterial Activity of the Essential Oils from Different Accessions of Oliveria decumbens
Authors: Khoshbakht Tahereh , Karami Akbar , Tahmasebi Aminallah , Maggi Filippo
Published: July 2020

Oliveria decumbens (Apiaceae) is an aromatic herb traditionally employed in the Persian medicine for the treatment of infectious and gastrointestinal disorders. In the present study, we analyzed the chemical composition of essential oils obtained from different Iranian populations and evaluated their efficacy on a panel of human pathogens (Staphylococcus aureus and Escherichia coli), probiotic (Bacillus subtilis), and phytopathogens (Clavibacter michiganensis, Curtobacterium flaccumfaciens, Xanthomonas citri, and Agrobacterium tumefaciens). The gas chromatographic-mass spectrometry analysis put in evidence four main volatile constituents such as thymol (20.3–36.4%), carvacrol (18.8–33.1%), γ-terpinene (10.6–25.9%), and p-cymene (9.5–17.3%), though with significant variability from an essential oil to another. Notably, the oils from the populations sited in Nourabad Mamasani and Dehdasht showed the highest amount of the phenolic monoterpenes thymol (36.4 and 35.2%, respectively) and carvacrol (33.1 and 30.6%, respectively). The antibacterial activity of O. decumbens essential oils was assessed by the minimum inhibitory concentration (MIC) and minimum bactericidal concentration (MBC) methods, showing high activity for the samples from Nourabad Mamasani and Dehdasht populations exhibiting high level of the above phenolics. The obtained MIC and MBC values (mg/ml) were in the ranges 0.0625–2 mg/ml and 1–16 mg/ml, respectively. Noteworthy, in some cases, the antibacterial activity of O. decumbens essential oils was higher than that of chloramphenicol used as positive control. The average MBCs displayed by the O. decumbens samples showed that C. flaccumfaciens had the highest sensitivity to the essential oils. Based on these results, our work shed light on selected O. decumbens populations deserving proper breeding and cultivation strategies in order to warrantee production of bioactive essential oils to be used at pharmaceutical and agricultural level to combat several pathogens.
Antioxidant and Anti-Inflammatory Effects of Citrus Flavonoid Hesperetin: Special Focus on Neurological Disorders
Authors: Khan Amjad , Ikram Muhammad , Hahm Jong Ryeal , Kim Myeong Ok
Published: July 2020

Neurodegenerative disorders have emerged as a serious health issue in the current era. The most common neurodegenerative disorders are Alzheimer’s disease (AD), Parkinson’s disease, multiple sclerosis, and amyotrophic lateral sclerosis (ALS). These diseases involve progressive impairment of neurodegeneration and memory impairment. A wide range of compounds have been identified as potential neuroprotective agents against different models of neurodegeneration both in vivo and in vitro. Hesperetin, a flavanone class of citrus flavonoid, is a derivative of hesperidin found in citrus fruits such as oranges, grapes, and lemons. It has been extensively reported that hesperetin exerts neuroprotective effects in experimental models of neurodegenerative diseases. In this systematic review, we have compiled all the studies conducted on hesperetin in both in vivo and in vitro models of neurodegeneration. Here, we have used an approach to lessen the bias in each study, providing a least biased, broad understanding of findings and impartial conclusions of the strength of evidence and the reliability of findings. In this review, we collected different papers from a wide range of journals describing the beneficial effects of hesperetin on animal models of neurodegeneration. Our results demonstrated consistent neuroprotective effects of hesperetin against different models of neurodegeneration. In addition, we have summarized its underlying mechanisms. This study provides the foundations for future studies and recommendations of further mechanistic approaches to conduct preclinical studies on hesperetin in different models.
The Potential of Lactobacillus spp. for Modulating Oxidative Stress in the Gastrointestinal Tract
Authors: Kong Yanzhuo , Olejar Kenneth J. , On Stephen L. W. , Chelikani Venkata
Published: July 2020

The gastrointestinal (GI) tract is crucial for food digestion and nutrient absorption in humans. However, the GI tract is usually challenged with oxidative stress that can be induced by various factors, such as exogenous pathogenic microorganisms and dietary alterations. As a part of gut microbiota, Lactobacillus spp. play an important role in modulating oxidative stress in cells and tissues, especially in the GI tract. Oxidative stress is linked with excessive reactive oxygen species (ROS) that can be formed by a few enzymes, such as nicotinamide adenine dinucleotide phosphate (NADPH) oxidases (NOXs). The redox mechanisms of Lactobacillus spp. may contribute to the downregulation of these ROS-forming enzymes. In addition, nuclear factor erythroid 2 (NFE2)-related factor 2 (Nrf-2) and nuclear factor kappa B (NF-κB) are two common transcription factors, through which Lactobacillus spp. modulate oxidative stress as well. As oxidative stress is closely associated with inflammation and certain diseases, Lactobacillus spp. could potentially be applied for early treatment and amelioration of these diseases, either individually or together with prebiotics. However, further research is required for revealing their mechanisms of action as well as their extensive application in the future.
A Novel Combination of γ-Tocopherol-Rich Mixture of Tocopherols and Ascorbic Acid Restores Fertility in Cases of Tyrosine Nitration-Associated Male Infertility in Mice
Authors: Scarlata Eleonora , Fernandez Maria C. , O’Flaherty Cristian
Published: July 2020

Infertility is an important health problem that affects up to 16% of couples worldwide. Male infertility is responsible for 50% of the cases. Currently, a physical examination, hormone profiling and the evaluation of two consecutive semen samples (to determine the sperm concentration, motility, morphology and, in very few cases, sperm DNA integrity) are the sole tools that physicians have to evaluate infertility in men. Antioxidant therapy is often used to improve sperm quality and function in infertile men. However, there are controversial results regarding the efficacy of these treatments. Prdx6−/− male mice are subfertile, displaying significant oxidative damage in the lipids, proteins and DNA of their spermatozoa. Here, we used Prdx6−/− male mice to test whether a novel combination of tocopherols that contained 60% γ-tocopherol and ascorbic acid could restore their fertility. These mice were fed with the supplemented (Vit. Mix) or control diets. To assess sperm quality, we determined the motility, levels of lipid peroxidation, DNA oxidation and tyrosine nitration in the spermatozoa. The number of pups sired by the Prdx6−/− mice fed with the Vit. Mix diet was higher than that sired by the males fed with the control diet, and the pups’ mortality was lower. The sperm quality was improved in the males fed with the supplemented diet. We concluded that treatment with a supplement composed of tocopherols and rich in γ-tocopherol and ascorbic acid is effective in restoring fertility in cases where oxidative stress and high levels of tyrosine nitration are associated with male infertility.
Glutathione S-Transferase Rescues Motor Neuronal Toxicity in Fly Model of Amyotrophic Lateral Sclerosis
Authors: Cha Sun Joo , Han Yeo Jeong , Choi Hyun-Jun , Kim Hyung-Jun , Kim Kiyoung
Published: July 2020

Transactive response DNA-binding protein-43 (TDP-43) is involved in the pathology of familial and sporadic amyotrophic lateral sclerosis (ALS). TDP-43-mediated ALS models in mice, Drosophila melanogaster, and zebrafish exhibit dysfunction of locomotor function, defective neuromuscular junctions, and motor neuron defects. There is currently no effective cure for ALS, and the underlying mechanisms of TDP-43 in ALS remain poorly understood. In this study, a genetic screen was performed to identify modifiers of human TDP-43 (hTDP-43) in a Drosophila model, and glutathione S-transferase omega 2 (GstO2) was found to be involved in hTDP-43 neurotoxicity. GstO2 overexpressed on recovered defective phenotypes resulting from hTDP-43, including defective neuromuscular junction (NMJ) boutons, degenerated motor neuronal axons, and reduced larvae and adult fly locomotive activity, without modulating the levels of hTDP-43 protein expression. GstO2 modulated neurotoxicity by regulating reactive oxygen species (ROS) produced by hTDP-43 in the Drosophila model of ALS. Our results demonstrated that GstO2 was a key regulator in hTDP-43-related ALS pathogenesis and indicated its potential as a therapeutic target for ALS.