bluuebunny/crossref_metadata_2025 huggingface dataset:
Supplementary Tables S1-S6 from STAT1 Drives Tumor Progression in Serous Papillary Endometrial Cancer
Authors: Kharma Budiman , Baba Tsukasa , Matsumura Noriomi , Kang Hyun Sook , Hamanishi Junzo , Murakami Ryusuke , McConechy Melissa M. , Leung Samuel , Yamaguchi Ken , Hosoe Yuko , Yoshioka Yumiko , Murphy Susan K. , Mandai Masaki , Hunstman David G. , Konishi Ikuo
Published: April 2023

Supplementary Tables S1-S6. Primer sequences (S1); Correlation between histological subtypes of 294 endometrial cancers and FIGO stage (S2); Overlapping upregulated/downregulated genes between Kyoto University Microarray data and TCGA_UCEC-2013 (S3); Significantly differentially expressed genes in GSE56026 from comparison of serous-like versus endometrioid-like clusters by SAM analysis (S4); Multivariate analysis of tumor stage, histology subtype and STAT1 with regard to patients' survival (S5); Connectivity Map analysis for potential candidate drugs based on STAT1 pathway gene expression (S6).
Supplementary Materials and Methods, Table 1, Figures 1 - 6 from SCP Phosphatases Suppress Renal Cell Carcinoma by Stabilizing PML and Inhibiting mTOR/HIF Signaling
Authors: Lin Yu-Ching , Lu Li-Ting , Chen Hsin-Yi , Duan Xueyan , Lin Xia , Feng Xin-Hua , Tang Ming-Jer , Chen Ruey-Hwa
Published: April 2023

Supplementary Materials and Methods: Description of additional methods used in this study. Supplementary References: List of references cited in Supplementary Materials and Methods. Supplementary Table 1: SCP1 expression in various tumors. Supplementary Figure 1. Screen for PMLS518 phosphatases. Supplementary Figure 2. The specificity of SCP1 antibody. Supplementary Figure 3. Representative IHC staining results for PML, pS518PML, SCP1, SCP3, and KLHL20. Supplementary Figure 4. The effects of combined inhibition of mTOR and PML degradation pathway in suppressing ccRCC. Supplementary Figure 5. The effects of combined treatment on tumor angiogenesis and mice body weight. Supplementary Figure 6. The effect of SCP1 on PML in PC-3 cells.
Supplementary Figure 2 from Rapamycin Rescues ABT-737 Efficacy in Small Cell Lung Cancer
Authors: Gardner Eric E. , Connis Nick , Poirier John T. , Cope Leslie , Dobromilskaya Irina , Gallia Gary L. , Rudin Charles M. , Hann Christine L.
Published: April 2023

PDF file - 527KB, Supplemental Figure 2. Rapamycin responses in a panel of SCLC cell lines and synergy matrix plots of ABT-737 plus inhibitors of PI3K and mTOR in SCLC cell lines.
Supplementary Figure 1 from Rapamycin Rescues ABT-737 Efficacy in Small Cell Lung Cancer
Authors: Gardner Eric E. , Connis Nick , Poirier John T. , Cope Leslie , Dobromilskaya Irina , Gallia Gary L. , Rudin Charles M. , Hann Christine L.
Published: April 2023

PDF file - 126KB, Supplemental Figure 1. The combination of ABT-737 and etoposide is poorly tolerated in mice bearing SCLC PDXs.
Supplemental Figure S2 from H3K9 Histone Methyltransferase, KMT1E/SETDB1, Cooperates with the SMAD2/3 Pathway to Suppress Lung Cancer Metastasis
Authors: Wu Pei-Chun , Lu Jeng-Wei , Yang Jer-Yen , Lin I-Hsuan , Ou Da-Liang , Lin Yu-Hsiang , Chou Kuan-Hsien , Huang Wen-Feng , Wang Wan-Ping , Huang Yih-Leh , Hsu Chiun , Lin Liang-In , Lin Yueh-Min , Shen C.-K. James , Tzeng Tsai-Yu
Published: April 2023

Effects of KMT1E level on cell migration/invasion in sublines cells.
Data Supplement from Novel Drug Candidates for the Treatment of Metastatic Colorectal Cancer through Global Inverse Gene-Expression Profiling
Authors: van Noort Vera , Schölch Sebastian , Iskar Murat , Zeller Georg , Ostertag Kristina , Schweitzer Christine , Werner Kristin , Weitz Jürgen , Koch Moritz , Bork Peer
Published: April 2023

Supplementary Table S1. Disease microarrays GEO accession.
Data Supplement from Novel Drug Candidates for the Treatment of Metastatic Colorectal Cancer through Global Inverse Gene-Expression Profiling
Authors: van Noort Vera , Schölch Sebastian , Iskar Murat , Zeller Georg , Ostertag Kristina , Schweitzer Christine , Werner Kristin , Weitz Jürgen , Koch Moritz , Bork Peer
Published: April 2023

Supplementary Table S4. GSEA results metastatic signature.
Supplementary Figure Legends from Hippo Coactivator YAP1 Upregulates SOX9 and Endows Esophageal Cancer Cells with Stem-like Properties
Authors: Song Shumei , Ajani Jaffer A. , Honjo Soichiro , Maru Dipen M. , Chen Qiongrong , Scott Ailing W. , Heallen Todd R. , Xiao Lianchun , Hofstetter Wayne L. , Weston Brian , Lee Jeffrey H. , Wadhwa Roopma , Sudo Kazuki , Stroehlein John R. , Martin James F. , Hung Mien-Chie , Johnson Randy L.
Published: April 2023

PDF file - 59K
Supplementary Figure 3 from Hippo Coactivator YAP1 Upregulates SOX9 and Endows Esophageal Cancer Cells with Stem-like Properties
Authors: Song Shumei , Ajani Jaffer A. , Honjo Soichiro , Maru Dipen M. , Chen Qiongrong , Scott Ailing W. , Heallen Todd R. , Xiao Lianchun , Hofstetter Wayne L. , Weston Brian , Lee Jeffrey H. , Wadhwa Roopma , Sudo Kazuki , Stroehlein John R. , Martin James F. , Hung Mien-Chie , Johnson Randy L.
Published: April 2023

PDF file - 1015K, YAP1 Induces SOX9 promoter activity in 293T cells and primer design for SOX9 ChIP-PCR.
Supplementary Legends and Information from CD66+ Cells in Cervical Precancers Are Partially Differentiated Progenitors with Neoplastic Traits
Authors: Pattabiraman Chitra , Hong Shiyuan , Gunasekharan Vignesh K. , Pranatharthi Annapurna , Bajaj Jeevisha , Srivastava Sweta , Krishnamurthy H. , Ammothumkandy Aswathy , Giri Venkat G. , Laimins Laimonis A. , Krishna Sudhir
Published: April 2023

Supplementary Legends and Information. Figure legends for Supplementary Figures (1-7) and primer sequences used in the study are provided
Supplementary Figure 6 from CD66+ Cells in Cervical Precancers Are Partially Differentiated Progenitors with Neoplastic Traits
Authors: Pattabiraman Chitra , Hong Shiyuan , Gunasekharan Vignesh K. , Pranatharthi Annapurna , Bajaj Jeevisha , Srivastava Sweta , Krishnamurthy H. , Ammothumkandy Aswathy , Giri Venkat G. , Laimins Laimonis A. , Krishna Sudhir
Published: April 2023

Supplementary Figure 6. CD66High cells are found at the edges of tumours and CINs
Supplementary Figure 4 from CD66+ Cells in Cervical Precancers Are Partially Differentiated Progenitors with Neoplastic Traits
Authors: Pattabiraman Chitra , Hong Shiyuan , Gunasekharan Vignesh K. , Pranatharthi Annapurna , Bajaj Jeevisha , Srivastava Sweta , Krishnamurthy H. , Ammothumkandy Aswathy , Giri Venkat G. , Laimins Laimonis A. , Krishna Sudhir
Published: April 2023

Supplementary Figure 4. CD66High cells have higher expression of viral gene E1^E4 in undifferentiated CIN-612 cultures
Supplemental Figure 8 from HTLV-1 bZIP Factor HBZ Promotes Cell Proliferation and Genetic Instability by Activating OncomiRs
Authors: Vernin Céline , Thenoz Morgan , Pinatel Christiane , Gessain Antoine , Gout Olivier , Delfau-Larue Marie-Hélène , Nazaret Nicolas , Legras-Lachuer Catherine , Wattel Eric , Mortreux Franck
Published: April 2023

Supplemental Figure 8. LNA-antimiR-17 and LNA-antimiR-21 alleviate the effect of HBZ on cell growth.
Supplementary Table 1, Figures 1 - 3 from Translesion Polymerase η Is Upregulated by Cancer Therapeutics and Confers Anticancer Drug Resistance
Authors: Tomicic Maja T. , Aasland Dorthe , Naumann Steffen C. , Meise Ruth , Barckhausen Christina , Kaina Bernd , Christmann Markus
Published: April 2023

Table 1. Primer sequences used in the study. Figure 1. FM-triggered induction of PolH in p53 proficient and deficient melanoma cells. Figure 2. FM-triggered induction of PolH and γH2AX foci formation. Figure 3. Expression of PolH in breast tumor tissue.
Supplementary Table S2 from MYC Activates Stem-like Cell Potential in Hepatocarcinoma by a p53-Dependent Mechanism
Authors: Akita Hirofumi , Marquardt Jens U. , Durkin Marian E. , Kitade Mitsuteru , Seo Daekwan , Conner Elizabeth A. , Andersen Jesper B. , Factor Valentina M. , Thorgeirsson Snorri S.
Published: April 2023

List of antibodies.
Supplementary Figure 1 from Development of Novel ADCs: Conjugation of Tubulysin Analogues to Trastuzumab Monitored by Dual Radiolabeling
Authors: Cohen Ruth , Vugts Danielle J. , Visser Gerard W.M. , Stigter-van Walsum Marijke , Bolijn Marije , Spiga Marco , Lazzari Paolo , Shankar Sreejith , Sani Monica , Zanda Matteo , van Dongen Guus A.M.S.
Published: April 2023

In vitro relative cell viability of JIMT, MDA-MB231, N87, SKBr3 and SKOV cells incubated with A TUB-OH and B TUB-OMOM. Representative experiments are shown, performed with six replicates per concentration. Data are presented as mean {plus minus} SD
Supplementary Table S1 from IGF2 Preserves Osteosarcoma Cell Survival by Creating an Autophagic State of Dormancy That Protects Cells against Chemotherapeutic Stress
Authors: Shimizu Takatsune , Sugihara Eiji , Yamaguchi-Iwai Sayaka , Tamaki Sakura , Koyama Yuko , Kamel Walied , Ueki Arisa , Ishikawa Tomoki , Chiyoda Tatsuyuki , Osuka Satoru , Onishi Nobuyuki , Ikeda Hiroko , Kamei Junzo , Matsuo Koichi , Fukuchi Yumi , Nagai Toshihiro , Toguchida Junya , Toyama Yoshiaki , Muto Akihiro , Saya Hideyuki
Published: April 2023

Supplementary Table S1. Sequences of primers and predicted product sizes for real-time RT-PCR analysis
Supplementary Methods from Therapeutic Targeting of BRCA1-Mutated Breast Cancers with Agents That Activate DNA Repair
Authors: Alli Elizabeth , Solow-Cordero David , Casey Stephanie C. , Ford James M.
Published: April 2023

Supplementary Methods. Description of additional methods and procedures used in the study.
Supplementary Information from IGF2 Preserves Osteosarcoma Cell Survival by Creating an Autophagic State of Dormancy That Protects Cells against Chemotherapeutic Stress
Authors: Shimizu Takatsune , Sugihara Eiji , Yamaguchi-Iwai Sayaka , Tamaki Sakura , Koyama Yuko , Kamel Walied , Ueki Arisa , Ishikawa Tomoki , Chiyoda Tatsuyuki , Osuka Satoru , Onishi Nobuyuki , Ikeda Hiroko , Kamei Junzo , Matsuo Koichi , Fukuchi Yumi , Nagai Toshihiro , Toguchida Junya , Toyama Yoshiaki , Muto Akihiro , Saya Hideyuki
Published: April 2023

Supplementary Information. Supplementary Materials and Methods and Supplementary Figure Legends
Supplementary Figures S1-S5 from Therapeutic Targeting of BRCA1-Mutated Breast Cancers with Agents That Activate DNA Repair
Authors: Alli Elizabeth , Solow-Cordero David , Casey Stephanie C. , Ford James M.
Published: April 2023

Supplementary Figures S1-S5. SUM149PT cell line meets the screening criteria (S1); A preliminary screen identified BrdU as a small-molecule positive control (S2); Optimization of conditions for HT-screening (S3); Validation of the HT screening protocol (S4); DNA repair-activating agents exhibit minimal cytotoxicity at concentrations that enhance BER of ODD (S5).
Supplementary Figure S5 from IGF2 Preserves Osteosarcoma Cell Survival by Creating an Autophagic State of Dormancy That Protects Cells against Chemotherapeutic Stress
Authors: Shimizu Takatsune , Sugihara Eiji , Yamaguchi-Iwai Sayaka , Tamaki Sakura , Koyama Yuko , Kamel Walied , Ueki Arisa , Ishikawa Tomoki , Chiyoda Tatsuyuki , Osuka Satoru , Onishi Nobuyuki , Ikeda Hiroko , Kamei Junzo , Matsuo Koichi , Fukuchi Yumi , Nagai Toshihiro , Toguchida Junya , Toyama Yoshiaki , Muto Akihiro , Saya Hideyuki
Published: April 2023

Supplementary Figure S5: (A,B) Viability of AXT cells was assessed after the treatment of aminooxyacetate or bafilomycin A. (C) Cell viability for AXT cells was evaluated after exposure to the indicated agents.
Supplementary Figures 1 - 8 from Immunosuppressive Myeloid Cells Induced by Chemotherapy Attenuate Antitumor CD4+ T-Cell Responses through the PD-1–PD-L1 Axis
Authors: Ding Zhi-Chun , Lu Xiaoyun , Yu Miao , Lemos Henrique , Huang Lei , Chandler Phillip , Liu Kebin , Walters Matthew , Krasinski Antoni , Mack Matthias , Blazar Bruce R. , Mellor Andrew L. , Munn David H. , Zhou Gang
Published: April 2023

PDF file - 133KB, Immunofluorescence staining (IF) of CD11b+ myeloid cells on spleen and tumor samples (S1). CTX+CD4 AT therapy induces an inflammatory immune milieu (S2). Chemoimmunotherapy leads to myeloid cell expansion in mice with lung metastasis of CT26HA colon cancer (S3). Therapy-induced monocytes can suppress CD4+ T cell activation in response to either antigen-specific or nonspecific stimulation (S4). Dose effect of CTX on myeloid cell induction (S5). Monocytic myeloid suppressor cells can be induced by doxorubicin and melphalan (S6). Low dose gemcitabine following CTX+CD4 AT therapy confers long-term survival benefit to mice with lung metastasis of CT26HA colon cancer (S7). Low dose 5-fluorouracil (5-FU) reduces therapy-induced monocytes (S8).
Supplementary Figures S1-S4 from Direct Chemosensitivity Monitoring Ex Vivo on Undissociated Melanoma Tumor Tissue by Impedance Spectroscopy
Authors: Jahnke Heinz-Georg , Poenick Sarah , Maschke Jan , Kendler Michael , Simon Jan C. , Robitzki Andrea A.
Published: April 2023

Supplementary Figures S1-S4. Figure S1. Limitations of fluorescence staining on melanoma tumor biopsy material. Figure S2. Equivalent circuit model for the tumor micro fragment - microcavity array system. Figure S3. Time and concentration dependent chemotherapeutic response pattern for tumor metastasis 2. Figure S4. Time and concentration dependent chemotherapeutic response pattern for tumor metastasis 2
Supplementary Figure S3 from Oncoprotein HBXIP Modulates Abnormal Lipid Metabolism and Growth of Breast Cancer Cells by Activating the LXRs/SREBP-1c/FAS Signaling Cascade
Authors: Zhao Yu , Li Hang , Zhang Yingyi , Li Leilei , Fang Runping , Li Yinghui , Liu Qian , Zhang Weiying , Qiu Liyan , Liu Fabao , Zhang Xiaodong , Ye Lihong
Published: April 2023

HBXIP occupies LXRE in SREBP-1c promoter involving LXRs.
Supplementary Figure 4 from Promoting Thiol Expression Increases the Durability of Antitumor T-cell Functions
Authors: Kesarwani Pravin , Al-Khami Amir A. , Scurti Gina , Thyagarajan Krishnamurthy , Kaur Navtej , Husain Shahid , Fang Quan , Naga Osama S. , Simms Patricia , Beeson Gyda , Voelkel-Johnson Christina , Garrett-Mayer Elizabeth , Beeson Craig C. , Nishimura Michael I. , Mehrotra Shikhar
Published: April 2023

Supplementary Figure 4. Schematic presentation summarizing anti-tumor potential of c-SHhi cells.
Supplementary Table S3 from Long Noncoding RNA GAPLINC Regulates CD44-Dependent Cell Invasiveness and Associates with Poor Prognosis of Gastric Cancer
Authors: Hu Ye , Wang Jilin , Qian Jin , Kong Xuan , Tang Jieting , Wang Yingchao , Chen Haoyan , Hong Jie , Zou Weiping , Chen Yingxuan , Xu Jie , Fang Jing-Yuan
Published: April 2023

Supplementary Table S3. LncRNAs associated with mutant p53 and Stat1.
Supplementary Figure 2 from Promoting Thiol Expression Increases the Durability of Antitumor T-cell Functions
Authors: Kesarwani Pravin , Al-Khami Amir A. , Scurti Gina , Thyagarajan Krishnamurthy , Kaur Navtej , Husain Shahid , Fang Quan , Naga Osama S. , Simms Patricia , Beeson Gyda , Voelkel-Johnson Christina , Garrett-Mayer Elizabeth , Beeson Craig C. , Nishimura Michael I. , Mehrotra Shikhar
Published: April 2023

Supplementary Figure 2. Differential anti-oxidant capacity in human T cell subsets
Supplemental Methods and Figure S1 from SIRT6 Promotes COX-2 Expression and Acts as an Oncogene in Skin Cancer
Authors: Ming Mei , Han Weinong , Zhao Baozhong , Sundaresan Nagalingam R. , Deng Chu-Xia , Gupta Mahesh P. , He Yu-Ying
Published: April 2023

Supplemental Methods and Supplemental Figure S1: SIRT6 has no effect on UVB-induced DNA damage repair and checkpoint activation
Supplemental Methods from Zfx Facilitates Tumorigenesis Caused by Activation of the Hedgehog Pathway
Authors: Palmer Colin J. , Galan-Caridad Jose M. , Weisberg Stuart P. , Lei Liang , Esquilin Jose M. , Croft Gist F. , Wainwright Brandon , Canoll Peter , Owens David M. , Reizis Boris
Published: April 2023

Supplemental Materials and Methods
Figure S5 from RABL6A Promotes G1–S Phase Progression and Pancreatic Neuroendocrine Tumor Cell Proliferation in an Rb1-Dependent Manner
Authors: Hagen Jussara , Muniz Viviane P. , Falls Kelly C. , Reed Sara M. , Taghiyev Agshin F. , Quelle Frederick W. , Gourronc Francoise A. , Klingelhutz Aloysius J. , Major Heather J. , Askeland Ryan W. , Sherman Scott K. , O'Dorisio Thomas M. , Bellizzi Andrew M. , Howe James R. , Darbro Benjamin W. , Quelle Dawn E.
Published: April 2023

Figure S5. Effect of RABL6A overexpression on Rb1 and p21 mRNA and protein expression
Figure S3 from RABL6A Promotes G1–S Phase Progression and Pancreatic Neuroendocrine Tumor Cell Proliferation in an Rb1-Dependent Manner
Authors: Hagen Jussara , Muniz Viviane P. , Falls Kelly C. , Reed Sara M. , Taghiyev Agshin F. , Quelle Frederick W. , Gourronc Francoise A. , Klingelhutz Aloysius J. , Major Heather J. , Askeland Ryan W. , Sherman Scott K. , O'Dorisio Thomas M. , Bellizzi Andrew M. , Howe James R. , Darbro Benjamin W. , Quelle Dawn E.
Published: April 2023

Figure S3. Quantitative RT-PCR showing RABL6A depletion does not affect p21 mRNA expression
Supplementary Materials and Methods from MicroRNA100 Inhibits Self-Renewal of Breast Cancer Stem–like Cells and Breast Tumor Development
Authors: Deng Lu , Shang Li , Bai Shoumin , Chen Ji , He Xueyan , Martin-Trevino Rachel , Chen Shanshan , Li Xiao-yan , Meng Xiaojie , Yu Bin , Wang Xiaolin , Liu Yajing , McDermott Sean P. , Ariazi Alexa E. , Ginestier Christophe , Ibarra Ingrid , Ke Jia , Luther Tahra , Clouthier Shawn G. , Xu Liang , Shan Ge , Song Erwei , Yao Herui , Hannon Gregory J. , Weiss Stephen J. , Wicha Max S. , Liu Suling
Published: April 2023

Supplementary Materials and Methods
Supplementary Figure 3 from Engineered Fusokine GIFT4 Licenses the Ability of B Cells to Trigger a Tumoricidal T-cell Response
Authors: Deng Jiusheng , Yuan Shala , Pennati Andrea , Murphy Jordan , Wu Jian Hui , Lawson David , Galipeau Jacques
Published: April 2023

PDF file - 97K, GIFT4 induces the expansion of murine GM-CSF+ IRA-like cells.
Supplemental Figure 1 from A Systematic Analysis Reveals Heterogeneous Changes in the Endocytic Activities of Cancer Cells
Authors: Elkin Sarah R. , Bendris Nawal , Reis Carlos R. , Zhou Yunyun , Xie Yang , Huffman Kenneth E. , Minna John D. , Schmid Sandra L.
Published: April 2023

Supplemental Figure 1: TfnR and CD8 internalization as measured by In-Cell ELISA.
Supplementary Figure S1 from TIF1γ Suppresses Tumor Progression by Regulating Mitotic Checkpoints and Chromosomal Stability
Authors: Pommier Roxane M. , Gout Johann , Vincent David F. , Alcaraz Lindsay B. , Chuvin Nicolas , Arfi Vanessa , Martel Sylvie , Kaniewski Bastien , Devailly Guillaume , Fourel Geneviève , Bernard Pascal , Moyret-Lalle Caroline , Ansieau Stéphane , Puisieux Alain , Valcourt Ulrich , Sentis Stéphanie , Bartholin Laurent
Published: April 2023

Inactivation of Tif1γ in spontaneously immortalized mouse embryonic fibroblasts rapidly results in cell cycle blockade in G2/M phases, spindle checkpoint activation and mitotic catastrophe events.
Supplementary Table S2 from Kinome-wide Functional Screen Identifies Role of PLK1 in Hormone-Independent, ER-Positive Breast Cancer
Authors: Bhola Neil E. , Jansen Valerie M. , Bafna Sangeeta , Giltnane Jennifer M. , Balko Justin M. , Estrada Mónica V. , Meszoely Ingrid , Mayer Ingrid , Abramson Vandana , Ye Fei , Sanders Melinda , Dugger Teresa C. , Allen Eliezer V. , Arteaga Carlos L.
Published: April 2023

Supplementary Table S2. siRNAs identified to decrease cell proliferation, ER transcription and both in the RNAi screen of MCF7/LTED cells.
Supplementary Figure Legends from TIF1γ Suppresses Tumor Progression by Regulating Mitotic Checkpoints and Chromosomal Stability
Authors: Pommier Roxane M. , Gout Johann , Vincent David F. , Alcaraz Lindsay B. , Chuvin Nicolas , Arfi Vanessa , Martel Sylvie , Kaniewski Bastien , Devailly Guillaume , Fourel Geneviève , Bernard Pascal , Moyret-Lalle Caroline , Ansieau Stéphane , Puisieux Alain , Valcourt Ulrich , Sentis Stéphanie , Bartholin Laurent
Published: April 2023

Supplementary Figure Legends from TIF1γ Suppresses Tumor Progression by Regulating Mitotic Checkpoints and Chromosomal Stability
Table S2 from PLK1 and HOTAIR Accelerate Proteasomal Degradation of SUZ12 and ZNF198 during Hepatitis B Virus–Induced Liver Carcinogenesis
Authors: Zhang Hao , Diab Ahmed , Fan Huitao , Mani Saravana Kumar Kailasam , Hullinger Ronald , Merle Philippe , Andrisani Ourania
Published: April 2023

Table S2: List of primers
Supplementary Figures S1-S9 from MMP16 Mediates a Proteolytic Switch to Promote Cell–Cell Adhesion, Collagen Alignment, and Lymphatic Invasion in Melanoma
Authors: Tatti Olga , Gucciardo Erika , Pekkonen Pirita , Holopainen Tanja , Louhimo Riku , Repo Pauliina , Maliniemi Pilvi , Lohi Jouko , Rantanen Ville , Hautaniemi Sampsa , Alitalo Kari , Ranki Annamari , Ojala Päivi M. , Keski-Oja Jorma , Lehti Kaisa
Published: April 2023

Supplementary Figures S1-S9. MMP14 which is over-expressed in melanoma cell lines was not associated with patient survival (S1); Vasculature and morphology of human melanoma tumors (S2); MMP16 expression in WM852 cells and its correlation with tumor weight in melanoma xenografts (S3); No significant difference in the blood and lymphatic vessel densities was observed between shScr and shMMP16 tumors (S4); MMP16-silencing does not affect mouse collagen type I in xenografts (S5); Endogenous or exogenous MMP16 regulates collagen invasion and cell-cell contacts in WM852 and Bowes melanoma cells (S6); Endogenous or recombinant MMP16 regulates LEC spheroid intravasation of WM852 and Bowes melanoma cells (S7); Silencing of L1CAM cleaved by MMP16 rescued the transmigration across BECs but not the cell junction disassembly of shMMP16 cells (S8); L1CAM immunohistochemistry of xenografts and human samples (S9).
Supplemental Figure 1 from Genetic Identification of SEMA3F as an Antilymphangiogenic Metastasis Suppressor Gene in Head and Neck Squamous Carcinoma
Authors: Doçi Colleen L. , Mikelis Constantinos M. , Lionakis Michail S. , Molinolo Alfredo A. , Gutkind J. Silvio
Published: April 2023

Supplementary Figure 1. Anti-SEMA3F antibody demonstrates specificity in human oral keratinocytes.
Supplementary Figure S2 from Activation-Induced Cytidine Deaminase Contributes to Pancreatic Tumorigenesis by Inducing Tumor-Related Gene Mutations
Authors: Sawai Yugo , Kodama Yuzo , Shimizu Takahiro , Ota Yuji , Maruno Takahisa , Eso Yuji , Kurita Akira , Shiokawa Masahiro , Tsuji Yoshihisa , Uza Norimitsu , Matsumoto Yuko , Masui Toshihiko , Uemoto Shinji , Marusawa Hiroyuki , Chiba Tsutomu
Published: April 2023

Supplementary Figure S2. The results of whole exome sequencing of AID Tg pancreatic tissue.
Supplementary Table S6 from IL13 Receptor α2 Signaling Requires a Scaffold Protein, FAM120A, to Activate the FAK and PI3K Pathways in Colon Cancer Metastasis
Authors: Bartolomé Rubén A. , García-Palmero Irene , Torres Sofía , López-Lucendo María , Balyasnikova Irina V. , Casal J. Ignacio
Published: April 2023

List of proteins coimmunoprecipitated with FAM120A
Supplementary Table S2 from IL13 Receptor α2 Signaling Requires a Scaffold Protein, FAM120A, to Activate the FAK and PI3K Pathways in Colon Cancer Metastasis
Authors: Bartolomé Rubén A. , García-Palmero Irene , Torres Sofía , López-Lucendo María , Balyasnikova Irina V. , Casal J. Ignacio
Published: April 2023

Clinical data of colon cancer samples used for immunohistochemical analysis
Supplementary Figure S3 from Heparanase Enhances Tumor Growth and Chemoresistance by Promoting Autophagy
Authors: Shteingauz Anna , Boyango Ilanit , Naroditsky Inna , Hammond Edward , Gruber Maayan , Doweck Ilana , Ilan Neta , Vlodavsky Israel
Published: April 2023

Supplementary Figure S3. PTEN and TSC do not localizes to acidic vesicles.
Supplementary Figure S2 from Intracellular Osteopontin Inhibits Toll-like Receptor Signaling and Impedes Liver Carcinogenesis
Authors: Fan Xiaoyu , He Chunyan , Jing Wei , Zhou Xuyu , Chen Rui , Cao Lei , Zhu Minhui , Jia Rongjie , Wang Hao , Guo Yajun , Zhao Jian
Published: April 2023

Supplementary Figure S2. Analysis of activation of MAPKs in macrophages treated with cellular debris.
Supplementary Figure S1 from Intracellular Osteopontin Inhibits Toll-like Receptor Signaling and Impedes Liver Carcinogenesis
Authors: Fan Xiaoyu , He Chunyan , Jing Wei , Zhou Xuyu , Chen Rui , Cao Lei , Zhu Minhui , Jia Rongjie , Wang Hao , Guo Yajun , Zhao Jian
Published: April 2023

Supplementary Figure S1. Effects of host-derived OPN on inflammatory microenvironment in DEN-induced hepatocarcinogenesis.
Supplementary Materials and Methods from Vacuolar-ATPase Inhibition Blocks Iron Metabolism to Mediate Therapeutic Effects in Breast Cancer
Authors: Schneider Lina S. , von Schwarzenberg Karin , Lehr Thorsten , Ulrich Melanie , Kubisch-Dohmen Rebekka , Liebl Johanna , Trauner Dirk , Menche Dirk , Vollmar Angelika M.
Published: April 2023

Supplementary Materials and Methods. Description of additional methods and procedures used in the study.
Supplementary Figure S1 from Vacuolar-ATPase Inhibition Blocks Iron Metabolism to Mediate Therapeutic Effects in Breast Cancer
Authors: Schneider Lina S. , von Schwarzenberg Karin , Lehr Thorsten , Ulrich Melanie , Kubisch-Dohmen Rebekka , Liebl Johanna , Trauner Dirk , Menche Dirk , Vollmar Angelika M.
Published: April 2023

Supplementary Figure S1. Archazolid induces apoptosis in breast cancer cells in vitro.
Supplementary Material from Cell–Cell Adhesion and Cytoskeleton Tension Oppose Each Other in Regulating Tumor Cell Aggregation
Authors: Saias Laure , Gomes Aurélie , Cazales Martine , Ducommun Bernard , Lobjois Valérie
Published: April 2023

Supplementary Material. Spherotrack.docx is a step-by-step procedure to use the MATLAB code used in this study. bwfinal.m, bwmcherry.m, bwtrans.m and spherotrack.m are four MATLAB code to be used as described.
Supplemental Table S1 from Enhanced Chemokine Receptor Recycling and Impaired S1P1 Expression Promote Leukemic Cell Infiltration of Lymph Nodes in Chronic Lymphocytic Leukemia
Authors: Patrussi Laura , Capitani Nagaja , Martini Veronica , Pizzi Marco , Trimarco Valentina , Frezzato Federica , Marino Filippo , Semenzato Gianpietro , Trentin Livio , Baldari Cosima T.
Published: April 2023

List of the primers used in this study.
Supplemental Figures S1-S7 from Enhanced Chemokine Receptor Recycling and Impaired S1P1 Expression Promote Leukemic Cell Infiltration of Lymph Nodes in Chronic Lymphocytic Leukemia
Authors: Patrussi Laura , Capitani Nagaja , Martini Veronica , Pizzi Marco , Trimarco Valentina , Frezzato Federica , Marino Filippo , Semenzato Gianpietro , Trentin Livio , Baldari Cosima T.
Published: April 2023

Comparison of surface labeling of CXCR4/CCR7 in unfixed or fixed cells (S1); CXCL12/CCL21 do not interfere with binding of the anti-CXCR4/CCR7 antibodies used in this study (S2); Co-localization analysis of internalized CXCR4 and CCR7 with Rab11 and Rab7 in normal and CLL B cells following antibody-mediated downregulation (S3); The imbalance between the plasma membrane and endosomal CXCR4/CCR7 pools in CLL cells can be normalized by targeting the microtubule cytoskeleton (S4); B-cell treatment with CXCL12 or CCL21 results in an increase in the surface levels of the respective receptors (S5); Enhanced adhesion to fibronectin of CXCL12- or CCL21-treated CLL cells compared to normal B cells (S6); CCR7 and S1P1 expression in B-CLL bone marrow biopsy samples (S7).
Supplementary Table S2 from Discovery and Validation of Biomarkers That Distinguish Mucinous and Nonmucinous Pancreatic Cysts
Authors: Park Jisook , Yun Hwan Sic , Lee Kwang Hyuck , Lee Kyu Taek , Lee Jong Kyun , Lee Soo-Youn
Published: April 2023

Sixty-two differentially expressed proteins (DEPs) selected for the further MRM-MS.
Supplemental Figure S6 from Syntheses and Discovery of a Novel Class of Cinnamic Hydroxamates as Histone Deacetylase Inhibitors by Multimodality Molecular Imaging in Living Subjects
Authors: Chan C.T. , Qi J. , Smith W. , Paranol R. , Mazitschek R. , West N. , Reeves R. , Chiosis G. , Schreiber S.L. , Bradner J.E. , Paulmurugan R. , Gambhir S.S.
Published: April 2023

Supplemental Figure S6. Specificity of 1A12 in inhibition of HDAC6.
Supplementary Figure S4 from Definition of Prostaglandin E2–EP2 Signals in the Colon Tumor Microenvironment That Amplify Inflammation and Tumor Growth
Authors: Ma Xiaojun , Aoki Tomohiro , Tsuruyama Tatsuaki , Narumiya Shuh
Published: April 2023

Supplementary Figure S4. Expression of BDNF, Osteopontin and COX-2 in colon from mice without AOM/DSS treatment.
Supplementary Figure S1 from Definition of Prostaglandin E2–EP2 Signals in the Colon Tumor Microenvironment That Amplify Inflammation and Tumor Growth
Authors: Ma Xiaojun , Aoki Tomohiro , Tsuruyama Tatsuaki , Narumiya Shuh
Published: April 2023

Supplementary Figure S1. Colon tumorigenesis in PG receptor-deficient mice and the effect of Ptger2-deficiency on cancer progression.
Supplementary Table 1 from CASC15-S Is a Tumor Suppressor lncRNA at the 6p22 Neuroblastoma Susceptibility Locus
Authors: Russell Mike R. , Penikis Annalise , Oldridge Derek A. , Alvarez-Dominguez Juan R. , McDaniel Lee , Diamond Maura , Padovan Olivia , Raman Pichai , Li Yimei , Wei Jun S. , Zhang Shile , Gnanchandran Janahan , Seeger Robert , Asgharzadeh Shahab , Khan Javed , Diskin Sharon J. , Maris John M. , Cole Kristina A.
Published: April 2023

List of imputation results at the 6p22.3 region.
Supplementary Figure 3 from CASC15-S Is a Tumor Suppressor lncRNA at the 6p22 Neuroblastoma Susceptibility Locus
Authors: Russell Mike R. , Penikis Annalise , Oldridge Derek A. , Alvarez-Dominguez Juan R. , McDaniel Lee , Diamond Maura , Padovan Olivia , Raman Pichai , Li Yimei , Wei Jun S. , Zhang Shile , Gnanchandran Janahan , Seeger Robert , Asgharzadeh Shahab , Khan Javed , Diskin Sharon J. , Maris John M. , Cole Kristina A.
Published: April 2023

Results of Sanger sequencing from 5' and 3'-RACE products of CASC15-S.
Supplementary Table S1 from Tenascin-C Protects Cancer Stem–like Cells from Immune Surveillance by Arresting T-cell Activation
Authors: Jachetti Elena , Caputo Sara , Mazzoleni Stefania , Brambillasca Chiara Svetlana , Parigi Sara Martina , Grioni Matteo , Piras Ignazio Stefano , Restuccia Umberto , Calcinotto Arianna , Freschi Massimo , Bachi Angela , Galli Rossella , Bellone Matteo
Published: April 2023

Supplementary Table S1. Proteins identified and quantified in the SILAC experiment, comparing T cells inhibited by TPIN-SCs (CD62Lhi) with those activated by TNE-SCs (CD62Llo) or with the subset activated by TPIN-SCs (CD62Llo).
Supplementary Figure Legends from Tenascin-C Protects Cancer Stem–like Cells from Immune Surveillance by Arresting T-cell Activation
Authors: Jachetti Elena , Caputo Sara , Mazzoleni Stefania , Brambillasca Chiara Svetlana , Parigi Sara Martina , Grioni Matteo , Piras Ignazio Stefano , Restuccia Umberto , Calcinotto Arianna , Freschi Massimo , Bachi Angela , Galli Rossella , Bellone Matteo
Published: April 2023

Supplementary Figure Legends. Legends for Supplementary Figures S1-S6.
Supplementary Figures S1-S5 from Androgen-Induced TMPRSS2 Activates Matriptase and Promotes Extracellular Matrix Degradation, Prostate Cancer Cell Invasion, Tumor Growth, and Metastasis
Authors: Ko Chun-Jung , Huang Cheng-Chung , Lin Hsin-Ying , Juan Chun-Pai , Lan Shao-Wei , Shyu Hsin-Yi , Wu Shang-Ru , Hsiao Pei-Wen , Huang Hsiang-Po , Shun Chia-Tung , Lee Ming-Shyue
Published: April 2023

Supplementary Figures S1-S5. Identification of TMPRSS2 as a mediator of androgen-induced prostate cancer cell invasion (S1); TMPRSS2 induced matriptase activation in prostate cancer cells (S2); TMPRSS2 promoted matriptase activation and the shedding of matriptase and HAI-1 in PCa cells (S3); Examination of the role of TMPRSS2 in the body weights of xenograft mice, the levels of total matriptase, Ki67 and laminin β1 in xenograft tumor tissues (S4); Higher levels of TMPRSS2 expression correlate with higher levels of matriptase activation in human PCa pathological specimens (S5).
Supplementary Figure S7 from Foretinib Is Effective Therapy for Metastatic Sonic Hedgehog Medulloblastoma
Authors: Faria Claudia C. , Golbourn Brian J. , Dubuc Adrian M. , Remke Marc , Diaz Roberto J. , Agnihotri Sameer , Luck Amanda , Sabha Nesrin , Olsen Samantha , Wu Xiaochong , Garzia Livia , Ramaswamy Vijay , Mack Stephen C. , Wang Xin , Leadley Michael , Reynaud Denis , Ermini Leonardo , Post Martin , Northcott Paul A. , Pfister Stefan M. , Croul Sidney E. , Kool Marcel , Korshunov Andrey , Smith Christian A. , Taylor Michael D. , Rutka James T.
Published: April 2023

Supplementary Figure S7. Foretinib reduces tumor growth in SHH medulloblastoma xenografts
Supplementary Figure S3 from Foretinib Is Effective Therapy for Metastatic Sonic Hedgehog Medulloblastoma
Authors: Faria Claudia C. , Golbourn Brian J. , Dubuc Adrian M. , Remke Marc , Diaz Roberto J. , Agnihotri Sameer , Luck Amanda , Sabha Nesrin , Olsen Samantha , Wu Xiaochong , Garzia Livia , Ramaswamy Vijay , Mack Stephen C. , Wang Xin , Leadley Michael , Reynaud Denis , Ermini Leonardo , Post Martin , Northcott Paul A. , Pfister Stefan M. , Croul Sidney E. , Kool Marcel , Korshunov Andrey , Smith Christian A. , Taylor Michael D. , Rutka James T.
Published: April 2023

Supplementary Figure S3. Clinicopathological correlations of SHH medulloblastomas according to p-cMET status
Supplementary Methods and References from CHK1 Inhibition Synergizes with Gemcitabine Initially by Destabilizing the DNA Replication Apparatus
Authors: Koh Siang-Boon , Courtin Aurélie , Boyce Richard J. , Boyle Robert G. , Richards Frances M. , Jodrell Duncan I.
Published: April 2023

Supplementary Methods and References. Description of additional methods and procedures used in the study. Also includes Supplementary References.
supplementary tables 1-4 from Microenvironmental Remodeling as a Parameter and Prognostic Factor of Heterogeneous Leukemogenesis in Acute Myelogenous Leukemia
Authors: Kim Jin-A , Shim Jae-Seung , Lee Ga-Young , Yim Hyeon Woo , Kim Tae-Min , Kim Myungshin , Leem Sun-Hee , Lee Jong-Wook , Min Chang-Ki , Oh Il-Hoan
Published: April 2023

supplementary tables 1-4. Supplementary Table S1 summarizes the list of antibodies used for flowcytometry analysis of current study. Supplementary Table S2 shows the full list of Go categories obtained from GSEA analysis of MSCs co-cultured with leukemic and normal CD34+ cells. Supplemental Table S3 shows the list of top-20 leading edge genes down-regulated in MSCs co-cultured with leukemia cells. Supplementary Table S4 shows the full list of AML patients enrolled in the cohort study to determine the association between stromal changes and clinical prognosis.
Supplementary Figure 1 from PML/RARα-Regulated miR-181a/b Cluster Targets the Tumor Suppressor RASSF1A in Acute Promyelocytic Leukemia
Authors: Bräuer-Hartmann Daniela , Hartmann Jens-Uwe , Wurm Alexander Arthur , Gerloff Dennis , Katzerke Christiane , Verga Falzacappa Maria Vittoria , Pelicci Pier Giuseppe , Müller-Tidow Carsten , Tenen Daniel G. , Niederwieser Dietger , Behre Gerhard
Published: April 2023

A, Apoptosis assay in NB4 cells 24h and 48h after application of As2O3 (1 µM). B, FACS analysis for CD11b expression in As2O3 treated NB4 cells 48h after application. C, qPCR analysis for C/EBPβ mRNA expression in NB4 cells after As2O3 application. D, Apoptosis assay in NB4 cells 48h after application of doxorubicin (0.01 µg/ml) with or without cytarabine (0.05 µM). E, qPCR analys for C/EBPβ mRNA expression in NB4 cells after doxorubicin and cytarabine application. For qPCR measurement GAPDH was used as control. Bars and values in the dot blots represent the median {plus minus} SD from three independent experiments.* p-value {less than or equal to} 0.05; ** p-value {less than or equal to} 0.01.
Supplementary Figure S3 from Neuroendocrine Transdifferentiation in Human Prostate Cancer Cells: An Integrated Approach
Authors: Cerasuolo Marianna , Paris Debora , Iannotti Fabio A. , Melck Dominique , Verde Roberta , Mazzarella Enrico , Motta Andrea , Ligresti Alessia
Published: April 2023

Supplementary Figure S3. O2PLS regression coefficients representing correlation between polar (A-G) and lipophilic metabolites (H-I) with transcripts.
Supplementary Materials and Methods from Mast Cells Infiltrating Inflamed or Transformed Gut Alternatively Sustain Mucosal Healing or Tumor Growth
Authors: Rigoni Alice , Bongiovanni Lucia , Burocchi Alessia , Sangaletti Sabina , Danelli Luca , Guarnotta Carla , Lewis Amy , Rizzo Aroldo , Silver Andrew R. , Tripodo Claudio , Colombo Mario P.
Published: April 2023

Supplementary Materials and Methods. Description of additional methods and procedures used in the study.
Supplementary Figure S2 from miR-25 Modulates Invasiveness and Dissemination of Human Prostate Cancer Cells via Regulation of αv- and α6-Integrin Expression
Authors: Zoni E. , van der Horst G. , van de Merbel A.F. , Chen L. , Rane J.K. , Pelger R.C.M. , Collins A.T. , Visakorpi T. , Snaar-Jagalska B.E. , Maitland N.J. , van der Pluijm G.
Published: April 2023

Supplementary Figure S2. miR-25 strongly changes cell morphology without affecting proliferation.
Supplementary Figure Legend from miR-25 Modulates Invasiveness and Dissemination of Human Prostate Cancer Cells via Regulation of αv- and α6-Integrin Expression
Authors: Zoni E. , van der Horst G. , van de Merbel A.F. , Chen L. , Rane J.K. , Pelger R.C.M. , Collins A.T. , Visakorpi T. , Snaar-Jagalska B.E. , Maitland N.J. , van der Pluijm G.
Published: April 2023

Supplementary Figure Legend. Legend for Supplementary Figures S1-S2.
Supplementary Methods from Chemotherapeutic Agents Subvert Tumor Immunity by Generating Agonists of Platelet-Activating Factor
Authors: Sahu Ravi P. , Ocana Jesus A. , Harrison Kathleen A. , Ferracini Matheus , Touloukian Christopher E. , Al-Hassani Mohammed , Sun Louis , Loesch Mathew , Murphy Robert C. , Althouse Sandra K. , Perkins Susan M. , Speicher Paul J. , Tyler Douglas S. , Konger Raymond L. , Travers Jeffrey B.
Published: April 2023

Supplementary Methods. Supplementary Mass spectrometric methodology
Supplementary Figure Legend from Intratumoral Heterogeneity in EGFR-Mutant NSCLC Results in Divergent Resistance Mechanisms in Response to EGFR Tyrosine Kinase Inhibition
Authors: Soucheray Margaret , Capelletti Marzia , Pulido Inés , Kuang Yanan , Paweletz Cloud P. , Becker Jeffrey H. , Kikuchi Eiki , Xu Chunxiao , Patel Tarun B. , Al-shahrour Fatima , Carretero Julián , Wong Kwok-Kin , Jänne Pasi A. , Shapiro Geoffrey I. , Shimamura Takeshi
Published: April 2023

Supplementary Figure Legend from Intratumoral Heterogeneity in EGFR-Mutant NSCLC Results in Divergent Resistance Mechanisms in Response to EGFR Tyrosine Kinase Inhibition
Supplemental Table 1 from Tumor-Induced Pressure in the Bone Microenvironment Causes Osteocytes to Promote the Growth of Prostate Cancer Bone Metastases
Authors: Sottnik Joseph L. , Dai Jinlu , Zhang Honglai , Campbell Brittany , Keller Evan T.
Published: April 2023

Supplementary Table 1: Pressurized MLO-Y4 secretes numerous cytokines and chemokines. CM was pressurized at 40 mmHg and compared to 0 mmHg CM by commercially available cytokine array. Table of relative densitometry values normalized to 0 mmHg CM.
Supplementary Methods from Mdm2 and Aurora Kinase A Inhibitors Synergize to Block Melanoma Growth by Driving Apoptosis and Immune Clearance of Tumor Cells
Authors: Vilgelm Anna E. , Pawlikowski Jeff S. , Liu Yan , Hawkins Oriana E. , Davis Tyler A. , Smith Jessica , Weller Kevin P. , Horton Linda W. , McClain Colt M. , Ayers Gregory D. , Turner David C. , Essaka David C. , Stewart Clinton F. , Sosman Jeffrey A. , Kelley Mark C. , Ecsedy Jeffrey A. , Johnston Jeffrey N. , Richmond Ann
Published: April 2023

Supplementary Methods. Description of additional methods and procedures used in the study.
Supplementary Materials and Methods from Tuning Sensitivity of CAR to EGFR Density Limits Recognition of Normal Tissue While Maintaining Potent Antitumor Activity
Authors: Caruso Hillary G. , Hurton Lenka V. , Najjar Amer , Rushworth David , Ang Sonny , Olivares Simon , Mi Tiejuan , Switzer Kirsten , Singh Harjeet , Huls Helen , Lee Dean A. , Heimberger Amy B. , Champlin Richard E. , Cooper Laurence J.N.
Published: April 2023

Supplementary Materials and Methods
Supplementary Table 1 from Therapeutic Targeting of the Warburg Effect in Pancreatic Cancer Relies on an Absence of p53 Function
Authors: Rajeshkumar N.V. , Dutta Prasanta , Yabuuchi Shinichi , de Wilde Roeland F. , Martinez Gary V. , Le Anne , Kamphorst Jurre J. , Rabinowitz Joshua D. , Jain Sanjay K. , Hidalgo Manuel , Dang Chi V. , Gillies Robert J. , Maitra Anirban
Published: April 2023

Supplementary Table 1. Mutational status of PDXs.
Supplementary Figure 2 from Tuning Sensitivity of CAR to EGFR Density Limits Recognition of Normal Tissue While Maintaining Potent Antitumor Activity
Authors: Caruso Hillary G. , Hurton Lenka V. , Najjar Amer , Rushworth David , Ang Sonny , Olivares Simon , Mi Tiejuan , Switzer Kirsten , Singh Harjeet , Huls Helen , Lee Dean A. , Heimberger Amy B. , Champlin Richard E. , Cooper Laurence J.N.
Published: April 2023

Production of TNF-a by Cetux-CAR and Nimo-CAR+ T cells in response to different densities of EGFR
Supplementary Figure 1 from Tuning Sensitivity of CAR to EGFR Density Limits Recognition of Normal Tissue While Maintaining Potent Antitumor Activity
Authors: Caruso Hillary G. , Hurton Lenka V. , Najjar Amer , Rushworth David , Ang Sonny , Olivares Simon , Mi Tiejuan , Switzer Kirsten , Singh Harjeet , Huls Helen , Lee Dean A. , Heimberger Amy B. , Champlin Richard E. , Cooper Laurence J.N.
Published: April 2023

Schematic of plasmids and AaPC
Supplementary Table S7: Mass spectrometry 13C-glucose tracer lipidomics data from Drug Redeployment to Kill Leukemia and Lymphoma Cells by Disrupting SCD1-Mediated Synthesis of Monounsaturated Fatty Acids
Authors: Southam Andrew D. , Khanim Farhat L. , Hayden Rachel E. , Constantinou Julia K. , Koczula Katarzyna M. , Michell Robert H. , Viant Mark R. , Drayson Mark T. , Bunce Chris M.
Published: April 2023

Mass spectrometry data: free fatty acids and phospholipids from cells that were drug treated in the presence of 13C D-glucose
Supplementary Table S2 from Differentiation and Loss of Malignant Character of Spontaneous Pulmonary Metastases in Patient-Derived Breast Cancer Models
Authors: Bockhorn Jessica , Prat Aleix , Chang Ya-Fang , Liu Xia , Huang Simo , Shang Meng , Nwachukwu Chika , Gomez-Vega Maria J. , Harrell J. Chuck , Olopade Olufunmilayo I. , Perou Charles M. , Liu Huiping
Published: April 2023

Supplementary Table S2. Gene pathway analyses by IPA.
Supplementary Table S1 from Differentiation and Loss of Malignant Character of Spontaneous Pulmonary Metastases in Patient-Derived Breast Cancer Models
Authors: Bockhorn Jessica , Prat Aleix , Chang Ya-Fang , Liu Xia , Huang Simo , Shang Meng , Nwachukwu Chika , Gomez-Vega Maria J. , Harrell J. Chuck , Olopade Olufunmilayo I. , Perou Charles M. , Liu Huiping
Published: April 2023

Supplementary Table S1. SAM analyses of lung mets versus primary tumors
Supplementary figure 5 from Decoy Receptor DcR1 Is Induced in a p50/Bcl3–Dependent Manner and Attenuates the Efficacy of Temozolomide
Authors: Mansour Nassir M. , Bernal Giovanna M. , Wu Longtao , Crawley Clayton D. , Cahill Kirk E. , Voce David J. , Balyasnikova Irina V. , Zhang Wei , Spretz Ruben , Nunez Luis , Larsen Gustavo F. , Weichselbaum Ralph R. , Yamini Bakhtiar
Published: April 2023

Supplementary figure 5. Kaplan-Meier survival curves from the REMBRANDT database stratified based on DCR1 mRNA expression level.
Supplementary Figure S2 from JAK Inhibition Impairs NK Cell Function in Myeloproliferative Neoplasms
Authors: Schönberg Kathrin , Rudolph Janna , Vonnahme Maria , Parampalli Yajnanarayana Sowmya , Cornez Isabelle , Hejazi Maryam , Manser Angela R. , Uhrberg Markus , Verbeek Walter , Koschmieder Steffen , Brümmendorf Tim H. , Brossart Peter , Heine Annkristin , Wolf Dominik
Published: April 2023

Supplementary Figure S2. Phosphorylation levels of JAK1 and JAK3 were not affected by ruxolitinib.
Supplemental Figure 4 from Neutrophil Extracellular Traps Accumulate in Peripheral Blood Vessels and Compromise Organ Function in Tumor-Bearing Animals
Authors: Cedervall Jessica , Zhang Yanyu , Huang Hua , Zhang Lei , Femel Julia , Dimberg Anna , Olsson Anna-Karin
Published: April 2023

Supplemental Figure 4: Mice with tumors lacking G-CSF expression do not show impaired function of the kidney vasculature.
Supplementary Figure S5 from HSP90 Supports Tumor Growth and Angiogenesis through PRKD2 Protein Stabilization
Authors: Azoitei Ninel , Diepold Kristina , Brunner Cornelia , Rouhi Arefeh , Genze Felicitas , Becher Alexander , Kestler Hans , van Lint Johan , Chiosis Gabriela , Koren John , Fröhling Stefan , Scholl Claudia , Seufferlein Thomas
Published: April 2023

Supplementary Figure S5. PRKD2 overexpression restores tumor viability and vascularization formation in nude mice treated with PU-H71.
Supplementary Figure 1 from Mitochondrial DNA Copy Number in Peripheral Blood Cells and Risk of Developing Breast Cancer
Authors: Lemnrau Alina , Brook Mark N. , Fletcher Olivia , Coulson Penny , Tomczyk Katarzyna , Jones Michael , Ashworth Alan , Swerdlow Anthony , Orr Nick , Garcia-Closas Montserrat
Published: April 2023

Supplementary Figure 1. Correlation between mtDNA copy number (average of triplicate measurements) in two blood samples collected at baseline (T0) and follow up after ~6 years (T1) from 91 women in the Breakthrough Generations study.
Supplementary Figure Legend from HSP90 Supports Tumor Growth and Angiogenesis through PRKD2 Protein Stabilization
Authors: Azoitei Ninel , Diepold Kristina , Brunner Cornelia , Rouhi Arefeh , Genze Felicitas , Becher Alexander , Kestler Hans , van Lint Johan , Chiosis Gabriela , Koren John , Fröhling Stefan , Scholl Claudia , Seufferlein Thomas
Published: April 2023

Supplementary Figure Legend. Legend for Supplementary Figures S1-S7.
Supplemental Figure 3 from The Neuronal Pentraxin-2 Pathway Is an Unrecognized Target in Human Neuroblastoma, Which Also Offers Prognostic Value in Patients
Authors: Bartolini Alice , Di Paolo Daniela , Noghero Alessio , Murgia Daniele , Sementa Angela R. , Cilli Michele , Pasqualini Renata , Arap Wadih , Bussolino Federico , Ponzoni Mirco , Pastorino Fabio , Marchiò Serena
Published: April 2023

Supplemental Figure 3: NPTX2 and NPTXR are barely or not expressed in normal mouse tissues
Supplementary Tables S1-S2 from Minor Changes in Expression of the Mismatch Repair Protein MSH2 Exert a Major Impact on Glioblastoma Response to Temozolomide
Authors: McFaline-Figueroa José L. , Braun Christian J. , Stanciu Monica , Nagel Zachary D. , Mazzucato Patrizia , Sangaraju Dewakar , Cerniauskas Edvinas , Barford Kelly , Vargas Amanda , Chen Yimin , Tretyakova Natalia , Lees Jacqueline A. , Hemann Michael T. , White Forest M. , Samson Leona D.
Published: April 2023

Supplementary Tables S1-S2. O6-methylguanine adducts levels in parental and TMZR3 GBM cells 3 hours post-TMZ exposure (S1); shRNA constructs used in this study (S2).
Supplementary Methods and Discussion from Minor Changes in Expression of the Mismatch Repair Protein MSH2 Exert a Major Impact on Glioblastoma Response to Temozolomide
Authors: McFaline-Figueroa José L. , Braun Christian J. , Stanciu Monica , Nagel Zachary D. , Mazzucato Patrizia , Sangaraju Dewakar , Cerniauskas Edvinas , Barford Kelly , Vargas Amanda , Chen Yimin , Tretyakova Natalia , Lees Jacqueline A. , Hemann Michael T. , White Forest M. , Samson Leona D.
Published: April 2023

Supplementary Methods and Discussion. Description of additional methods and procedures used in the study. Also includes Supplementary References.