bluuebunny/crossref_metadata_2025 huggingface dataset:
Nonlinear Control of Hydrostatic Thrust Bearing Using Multivariable Optimization
Authors: Rehman Waheed Ur , Khan Wakeel , Ullah Nasim , Chowdhury M. D. Shahariar , Techato Kuaanan , Haneef Muhammad
Published: April 2021

This research work is focused on the nonlinear modeling and control of a hydrostatic thrust bearing. In the proposed work, a mathematical model is formulated for a hydrostatic thrust bearing system that includes the effects of uncertainties, unmodelled dynamics, and nonlinearities. Depending on the type of inputs, the mathematical model is divided into three subsystems. Each subsystem has the same output, i.e., fluid film thickness with different types of input, i.e., viscosity, supply pressure, and recess pressure. An extended state observer is proposed to estimate the unavailable states. A backstepping control technique is presented to achieve the desired tracking performance and stabilize the closed-loop dynamics. The proposed control technique is based on the Lyapunov stability theorem. Moreover, particle swarm optimization is used to search for the best tuning parameters for the backstepping controller and extended state observer. The effectiveness of the proposed method is verified using numerical simulations.
A Reliability Growth Process Model with Time-Varying Covariates and Its Application
Authors: Tian Xin-Yu , Shi Xincheng , Peng Cheng , Yi Xiao-Jian
Published: April 2021

The nonhomogeneous Poisson process model with power law intensity, also known as the Army Materiel Systems Analysis Activity (AMSAA) model, is commonly used to model the reliability growth process of many repairable systems. In practice, it is necessary to test the reliability of the product under different operational environments. In this paper we introduce an AMSAA-based model considering the covariate effects to measure the influence of the time-varying environmental condition. The parameter estimation of the model is typically performed using maximum likelihood on the failure data. The statistical properties of the estimation in the model are comprehensively derived by the martingale theory. Further inferences including confidence interval estimation and hypothesis tests are designed for the model. The performance and properties of the method are verified in a simulation study, compared with the classical AMSAA model. A case study is used to illustrate the practical use of the model. The proposed approach can be adapted for a wide class of nonhomogeneous Poisson process based models.
Coping with Challenges in Teaching Foreign Languages to Children with Mild Intellectual Disabilities: Stakeholders’ Perspectives
Authors: Pérez-Valverde Cristina , Ruiz-Cecilia Raúl , Medina-Sánchez Leopoldo , Guijarro-Ojeda Juan Ramón
Published: April 2021

In this qualitative study, we aim to gain insight into the stakeholders’ perspectives around the inclusion of a mild intellectual disability (MID) student of perinatal origin in the foreign language (FL) classroom, and their perspectives on the student’s working conditions, and the support needed to effectively develop this student’s basic FL skills. The research hypothesis holds that the stakeholders face numerous technical, contextual, and formative challenges which hinder the MID student’s learning conditions in the FL classroom. The study was carried out in a state secondary school of the metropolitan area of Granada (Spain). Different stakeholders participated in this study. As an instrument of research, we designed an in-depth interview with open questions. The data were perused, sifted, and interpreted by means of a content analysis methodology. The main results confirm the research hypothesis since stakeholders’ perspectives are positive towards the theoretical bases of inclusive education. Conversely, we observe that these perspectives are negative when it comes to the real and effective practice of inclusive education in the FL classroom, which would allow them to tailor their teaching methodology to the real needs of the MID student and the rest of students with special educational needs (SEN).
Multidisciplinary Lightweight Optimization for Front Impact Structure of Body Frame Based on Active and Passive Safety
Authors: Wang Tingting , Wang Mengjian , Li Xia , Qin Dongchen
Published: April 2021

The Analytic Target Cascading (ATC) is an effective method for solving hierarchical Multidisciplinary Design Optimization (MDO) problems. At the same time, this method suffers from poor convergence and low accuracy, which is caused by the inconsistency of system constraints. In this paper, a novel ATC method based on dynamic relaxation factor is proposed. The dynamic relaxation factor of consistency constraint is added in the system level and is adjusted by the deviation of the linking variables between the levels to ensure the feasible region of the design space. The effectiveness and accuracy of this method are verified by a mathematical example. This method is used to solve the lightweight problem of the trussed front part of the vehicle body frame based on active and passive safety to achieve the collaborative optimization of lightweight trussed frame, crash safety, and aerodynamic characteristics. The important value of the novel ATC method based on dynamic relaxation factor in engineering applications is proven.
Biosynthesis of Long-Chain Polyunsaturated Fatty Acids in Marine Gammarids: Molecular Cloning and Functional Characterisation of Three Fatty Acyl Elongases
Authors: Ribes-Navarro Alberto , Navarro Juan C. , Hontoria Francisco , Kabeya Naoki , Standal Inger B. , Evjemo Jan O. , Monroig Óscar
Published: April 2021

Long-chain (C20–24) polyunsaturated fatty acids (LC-PUFAs) are essential nutrients that are mostly produced in marine ecosystems. Previous studies suggested that gammarids have some capacity to endogenously produce LC-PUFAs. This study aimed to investigate the repertoire and functions of elongation of very long-chain fatty acid (Elovl) proteins in gammarids. Our results show that gammarids have, at least, three distinct elovl genes with putative roles in LC-PUFA biosynthesis. Phylogenetics allowed us to classify two elongases as Elovl4 and Elovl6, as they were bona fide orthologues of vertebrate Elovl4 and Elovl6. Moreover, a third elongase was named as “Elovl1/7-like” since it grouped closely to the Elovl1 and Elovl7 found in vertebrates. Molecular analysis of the deduced protein sequences indicated that the gammarid Elovl4 and Elovl1/7-like were indeed polyunsaturated fatty acid (PUFA) elongases, whereas Elovl6 had molecular features typically found in non-PUFA elongases. This was partly confirmed in the functional assays performed on the marine gammarid Echinogammarus marinus Elovl, which showed that both Elovl4 and Elovl1/7-like elongated PUFA substrates ranging from C18 to C22. E. marinus Elovl6 was only able to elongate C18 PUFA substrates, suggesting that this enzyme does not play major roles in the LC-PUFA biosynthesis of gammarids.
The Association of Body Composition Parameters and Simultaneously Measured Inter-Arm Systolic Blood Pressure Differences
Authors: Yüksel Serkan , Çoksevim Metin , Meriç Murat , Şahin Mahmut
Published: April 2021

Background and Objectives: An inter-arm systolic blood pressure difference (IASBPD) is defined as a blood pressure (BP) disparity of ≥10 mmHg between arms. IASBPDs are associated with an increased risk of cardiovascular disease (CVD). Similarly, visceral fat accumulation (VFA) is clinically important because it is associated with higher cardiovascular disease risk. Accordingly, this study compared the body composition parameters of IASBPD individuals with individuals who did not express an IASBPD. Materials and Methods: The analysis included 104 patients. The blood pressures of all participants were measured simultaneously in both arms using automated oscillometric devices. Then patients were divided into two groups according to their IASBPD status: Group 1 (IASBPD− (<10 mmHg)); Group 2 (IASPPD+ (≥10 mmHg)). Body composition parameters were measured using bioelectrical impedance analysis. Results: In 42 (40%) patients, the simultaneously measured IASBPD was equal to or higher than 10 mmHg. The right brachial SBP was higher in 63% of patients. There were no differences between the groups in terms of demographic and clinical characteristics. Regarding the two groups’ body composition parameter differences, VFA was significantly higher in group 2 (p = 0.014). Conclusions: The IASBPD is known to be associated with an increased risk of cardiovascular events. Although the body mass indexes (BMIs) of the two groups were similar, VFA levels in those with a greater than 10 mmHg IASBPD were found to be significantly higher. This finding may explain the increased cardiovascular risk in this group.
Pacing in Long-Distance Running: Sex and Age Differences in 10-km Race and Marathon
Authors: Cuk Ivan , Nikolaidis Pantelis T. , Villiger Elias , Knechtle Beat
Published: April 2021

Background and objective: The recent availability of data from mass-participation running events has allowed researchers to examine pacing from the perspective of non-elite distance runners. Based on an extensive analysis of the literature, we concluded that no study utilizing mass-participation events data has ever directly compared pacing in the 10-km race, with other long-distance races. Therefore, the main aim of this study was to assess and compare pacing between 10-km runners and marathoners, in regards to their sex and age. Materials and methods: For the purpose of this study, official results from the Oslo marathon (n = 8828) and 10-km race (n = 16,315) held from 2015 to 2018 were included. Results: Both 10-km runners and marathoners showed positive pacing strategies. Moreover, two-way analysis of variance showed that women were less likely to slow in the marathon than men (9.85% in comparison to 12.70%) however, not in the 10-km race (3.99% in comparison to 3.38%). Finally, pace changing is more prominent in youngest and oldest marathoners comparing to the other age groups (12.55% in comparison to 10.96%). Conclusions: Based on these findings, practitioners should adopt different training programmes for marathoners in comparison to shorter long-distance runners.
Aspirin Desensitization: Implications for Acetylsalicylic Acid-Sensitive Pregnant Women
Authors: Benito-Garcia Filipe , Pires Inês , Lima Jorge
Published: April 2021

Low-dose acetylsalicylic acid (ASA) is widely used during pregnancy to prevent obstetric complications of placental dysfunction, such as preeclampsia, stillbirth and fetal growth restriction, and obstetric complications in pregnant women with antiphospholipid syndrome. ASA-sensitive pregnant women cannot benefit from the effects of ASA due to the possibility of severe or potentially life-threatening hypersensitivity reactions to ASA. ASA desensitization is a valuable and safe therapeutic option for these women, allowing them to start daily prophylaxis with ASA and prevent pregnancy complications. The authors discuss the recent advances in obstetric conditions preventable by ASA and the management of ASA hypersensitivity in pregnancy, including ASA desensitization. To encourage the implementation of ASA desensitization protocols in ASA-sensitive pregnant women, they also propose a practical approach for use in daily clinical practice.
Association between Lower Urinary Tract Symptoms and Sleep Quality of Patients with Depression
Authors: Przydacz Mikolaj , Skalski Michal , Sobanski Jerzy , Chlosta Marcin , Raczynski Karol , Klasa Katarzyna , Dudek Dominika , Chlosta Piotr
Published: April 2021

Background and Objectives: In the general population, sleep disorders are associated with lower urinary tract symptoms (LUTS) including urinary incontinence (UI). This connection has not been explored fully in specific patient groups. Thus, we investigated the association between sleep quality and LUTS for patients with depression. Materials and Methods: This study was prospective and cross-sectional. We analyzed questionnaire data on depression, sleep quality, LUTS, and UI from depressed patients treated in our department of adult psychiatry. We used the Hamilton Rating Scale for Depression, the Holland Sleep Disorders Questionnaire, the International Prostate Symptom Score, and the International Consultation on Incontinence Questionnaire-Short Form. Results: In total, 102 patients treated for depression were enrolled. We found a statistically significant correlation between depression severity and sleep quality. A significant correlation was also investigated for sleep quality and LUTS severity. The group of depressed patients with moderate or severe LUTS had greater sleep problems compared with patients who had mild urinary tract symptoms or no symptoms. With regression analysis, we further demonstrated that the relationships between LUTS and sleep quality as well as UI and sleep quality in depressed patients are independent from age and sex. Conclusions: In the cohort of patients treated for depression, sleep quality correlated with LUTS including UI. We suggest that the negative effect of LUTS and UI on sleep quality that we observed should lead to the re-evaluation of current recommendations for diagnosis and treatment of sleep problems among patients with depression.
New Preparation Methods for Pore Formation on Polysulfone Membranes
Authors: Vainrot Natalia , Li Mingyuan , Isloor Arun M. , Eisen Moris S.
Published: April 2021

This work described the preparation of membranes based on aromatic polysulfones through the phase-inversion method induced by a nonsolvent, generating the phase separation (NIPS) process. Three new techniques, including the nano iron acid etching method, base hydrolysis method of crosslinked polymers, and base hydrolysis method of a reactive component in a binary polymer blend, were developed for pore creation on membranes. The modified polymers and obtained membranes were carefully characterized. The uniform pores were successfully created by base hydrolysis of the crosslinked polymers and obtained at the size of the crosslinker. Moreover, homogeneous pores were created after base hydrolysis of the membranes prepared from binary polymer blends due to the internal changes in the polymer structure. The separation performance of membranes was tested with different inorganic salt solutions and compared with commercially known membranes. These new membranes exhibited high water flux (up to 3000 L/m−2·h−1 at 10 bar and at 25 °C) and reasonable rejections for monovalent (21–44%) and multivalent ions (18–60%), depending on the different etching of the hydrolysis times. The comparison of these membranes with commercial ones confirmed their good separation performance and high potential application for water treatment applications.
A Study of the Metallurgical and Mechanical Properties of Friction-Stir-Processed Cu
Authors: Regev Michael , Spigarelli Stefano
Published: April 2021

Friction stir processing (FSP), a severe plastic deformation process, was applied on pure Cu to obtain a stir zone with a very fine grain size. Yet, when FSP is used, the stir zone is as wide as the diameter of the shoulder at the upper surface of the weld and markedly narrower near its opposite surface. This property, as well as the differences between the advancing side and the retreating side, makes it impossible to obtain a uniform cross-section as far as the microstructure and mechanical properties are concerned. For these reasons, a new approach is proposed in which the material was processed on both sides, thus yielding a wider, rectangular and more homogenous stir zone from which all the specimens were machined out. Processing the material from both sides eliminated any microstructural difference between the upper and the lower side, at least within the gauge length’s cross-section of the creep specimens. Although grain refinement was detected, the mechanical properties of the friction-stir-processed (FSP’ed) material are inferior relative to those of the parent material. The TEM study reported in the current paper revealed the existence of nanosized grains in the FSP’ed material due to dynamic recrystallization (DRX) occurring during the processing stage. Because both X-ray inspection and fractography showed that the FSP’ed material was free of defects, the material may not comply with the Hall–Petch relation due to lower dislocation density caused by XRD occurring during FSP. The inverse Hall–Petch effect may also be considered as an assistive mechanism in mechanical property deterioration.
Atomic Layer Deposition of aTiO2 Layer on Nitinol and Its Corrosion Resistance in a Simulated Body Fluid
Authors: Rudolf Rebeka , Stambolić Aleš , Kocijan Aleksandra
Published: April 2021

Nitinol is a group of nearly equiatomic alloys composed of nickel and titanium, which was developed in the 1970s. Its properties, such as superelasticity and Shape Memory Effect, have enabled its use, especially for biomedical purposes. Due to the fact that Nitinol exhibits good corrosion resistance in a chloride environment, an unusual combination of strength and ductility, a high tendency for self-passivation, high fatigue strength, low Young’s modulus and excellent biocompatibility, its use is still increasing. In this research, Atomic Layer Deposition (ALD) experiments were performed on a continuous vertical cast (CVC) NiTi rod (made in-house) and on commercial Nitinol as the control material, which was already in the rolled state. The ALD deposition of the TiO2 layer was accomplished in a Beneq TFS 200 system at 250 °C. The pulsing times for TiCl4 and H2O were 250 ms and 180 ms, followed by appropriate purge cycles with nitrogen (3 s after the TiCl4 and 2 s after the H2O pulses). After 1100 repeated cycles of ALD depositing, the average thickness of the TiO2 layer for the CVC NiTi rod was 52.2 nm and for the commercial Nitinol, it was 51.7 nm, which was confirmed by X-ray Photoelectron Spectroscopy (XPS) and Scanning Electron Microscope (SEM) using Energy-dispersive X-ray (EDX) spectroscopy. The behaviour of the CVC NiTi and commercial Nitinol with and without the TiO2 layer was investigated in a simulated body fluid at body temperature (37 °C) to explain their corrosion resistance. Potentiodynamic polarisation measurements showed that the lowest corrosion current density (0.16 μA/cm2) and the wider passive region were achieved by the commercial NiTi with TiO2. Electrochemical Impedance Spectroscopy measurements revealed that the CVC NiTi rod and the commercial Nitinol have, for the first 48 h of immersion, only resistance through the oxide layer, as a consequence of the thin and compact layer. On the other hand, the TiO2/CVC NiTi rod and TiO2/commercial Nitinol had resistances through the oxide and porous layers the entire immersion time since the TiO2 layer was formatted on the surfaces.
Changes of Hematological and Hemorheological Parameters in Rabbits with Hypercholesterolemia
Authors: Tanczos Bence , Somogyi Viktoria , Bombicz Mariann , Juhasz Bela , Nemeth Norbert , Deak Adam
Published: April 2021

Hypercholesterolemia plays an important role in the development of atherosclerosis, leading to endothelial dysfunction, ischemic events, and increased mortality. Numerous studies suggest the pivotal role of rheological factors in the pathology of atherosclerosis. To get a more detailed hematological and hemorheological profile in hypercholesterolemia, we carried out an experiment on rabbits. Animals were divided into two groups: the control group (Control) was kept on normal rabbit chow, the high-cholesterol diet group (HC) was fed with special increased cholesterol-containing food. Hematological parameters (Sysmex K-4500 automate), whole blood and plasma viscosity (Hevimet-40 capillary viscometer), red blood cell (RBC) aggregation (Myrenne MA-1 aggregometer), deformability and mechanical stability (LoRRca MaxSis Osmoscan ektacytometer) were tested. The white blood cell and platelet count, mean corpuscular volume, and mean corpuscular hemoglobin were significantly higher in the HC group, while the RBC count, hemoglobin, and hematocrit values were lower than the Control data. Viscosity values corrected to 40% hematocrit were higher in the HC group. The RBC aggregation significantly increased in the HC vs. the Control. The HC group showed significantly worse results both in RBCs’ deformability and membrane stability. In conclusion, the atherogenic diet worsens the hematological and macro- and micro-rheological parameters, affecting blood flow properties and microcirculation.
Mass Spectrometry Imaging as a Tool to Investigate Region Specific Lipid Alterations in Symptomatic Human Carotid Atherosclerotic Plaques
Authors: Greco Francesco , Quercioli Laura , Pucci Angela , Rocchiccioli Silvia , Ferrari Mauro , Recchia Fabio A. , McDonnell Liam A.
Published: April 2021

Atherosclerosis is characterized by fatty plaques in large and medium sized arteries. Their rupture can causes thrombi, occlusions of downstream vessels and adverse clinical events. The investigation of atherosclerotic plaques is made difficult by their highly heterogeneous nature. Here we propose a spatially resolved approach based on matrix-assisted laser desorption/ionization (MALDI) mass spectrometry imaging to investigate lipids in specific regions of atherosclerotic plaques. The method was applied to a small dataset including symptomatic and asymptomatic human carotid atherosclerosis plaques. Tissue sections of symptomatic and asymptomatic human carotid atherosclerotic plaques were analyzed by MALDI mass spectrometry imaging (MALDI MSI) of lipids, and adjacent sections analyzed by histology and immunofluorescence. These multimodal datasets were used to compare the lipid profiles of specific histopathological regions within the plaque. The lipid profiles of macrophage-rich regions and intimal vascular smooth muscle cells exhibited the largest changes associated with plaque outcome. Macrophage-rich regions from symptomatic lesions were found to be enriched in sphingomyelins, and intimal vascular smooth muscle cells of symptomatic plaques were enriched in cholesterol and cholesteryl esters. The proposed method enabled the MALDI MSI analysis of specific regions of the atherosclerotic lesion, confirming MALDI MSI as a promising tool for the investigation of histologically heterogeneous atherosclerotic plaques.
High-Performance CVD Bilayer MoS2 Radio Frequency Transistors and Gigahertz Mixers for Flexible Nanoelectronics
Authors: Gao Qingguo , Zhang Chongfu , Yang Kaiqiang , Pan Xinjian , Zhang Zhi , Yang Jianjun , Yi Zichuan , Chi Feng , Liu Liming
Published: April 2021

Two-dimensional (2D) MoS2 have attracted tremendous attention due to their potential applications in future flexible high-frequency electronics. Bilayer MoS2 exhibits the advantages of carrier mobility when compared with monolayer mobility, thus making the former more suitable for use in future flexible high-frequency electronics. However, there are fewer systematical studies of chemical vapor deposition (CVD) bilayer MoS2 radiofrequency (RF) transistors on flexible polyimide substrates. In this work, CVD bilayer MoS2 RF transistors on flexible substrates with different gate lengths and gigahertz flexible frequency mixers were constructed and systematically studied. The extrinsic cutoff frequency (fT) and maximum oscillation frequency (fmax) increased with reducing gate lengths. From transistors with a gate length of 0.3 μm, we demonstrated an extrinsic fT of 4 GHz and fmax of 10 GHz. Furthermore, statistical analysis of 14 flexible MoS2 RF transistors is presented in this work. The study of a flexible mixer demonstrates the dependence of conversion gain versus gate voltage, LO power and input signal frequency. These results present the potential of CVD bilayer MoS2 for future flexible high-frequency electronics.
Flexible Piezoresistive Tactile Sensor Based on Polymeric Nanocomposites with Grid-Type Microstructure
Authors: Lee Da-Huei , Chuang Cheng-Hsin , Shaikh Muhammad Omar , Dai Yong-Syuan , Wang Shao-Yu , Wen Zhi-Hong , Yen Chung-Kun , Liao Chien-Feng , Pan Cheng-Tang
Published: April 2021

Piezoresistive tactile sensors made using nanocomposite polymeric materials have been shown to possess good flexibility, electrical performance, and sensitivity. However, the sensing performance, especially in the low-pressure range, can be significantly improved by enabling uniform dispersion of the filler material and utilization of effective structural designs that improve the tactile sensing performance. In this study, a novel flexible piezoresistive tactile sensor with a grid-type microstructure was fabricated using polymer composites comprising multi-walled carbon nanotubes (MWCNTs) as the conductive filler and polydimethylsiloxane (PDMS) as the polymeric matrix. The research focused on improving the tactile sensor performance by enabling uniform dispersion of filler material and optimizing sensor design and structure. The doping weight ratio of MWCNTs in PDMS varied from 1 wt.% to 10 wt.% using the same grid structure-sensing layer (line width, line spacing, and thickness of 1 mm). The sensor with a 7 wt.% doping ratio had the most stable performance, with an observed sensitivity of 6.821 kPa−1 in the lower pressure range of 10–20 kPa and 0.029 kPa−1 in the saturation range of 30–200 kPa. Furthermore, the dimensions of the grid structure were optimized and the relationship between grid structure, sensitivity, and sensing range was correlated. The equation between pressure and resistance output was derived to validate the principle of piezoresistance. For the grid structure, dimensions with line width, line spacing, and thickness of 1, 1, and 0.5 mm were shown to have the most stable and improved response. The observed sensitivity was 0.2704 kPa−1 in the lower pressure range of 50–130 kPa and 0.0968 kPa−1 in the saturation range of 140–200 kPa. The piezoresistive response, which was mainly related to the quantum tunneling effect, can be optimized based on the dopant concentration and the grid microstructure. Furthermore, the tactile sensor showed a repeatable response, and the accuracy was not affected by temperature changes in the range of 10 to 40 °C and humidity variations from 50 to 80%. The maximum error fluctuation was about 5.6% with a response delay time of about 1.6 ms when cyclic loading tests were performed under a normal force of 1 N for 10,200 cycles. Consequently, the proposed tactile sensor shows practical feasibility for a wide range of wearable technologies and robotic applications such as touch detection and grasping.
Rapid Fabrication of Large-Area Concave Microlens Array on ZnSe
Authors: Zhang Fan , Yang Qing , Bian Hao , Hou Xun , Chen Feng
Published: April 2021

A rapid and single-step method for the fabrication of a zinc selenide (ZnSe) concave microlens array through the high-speed line-scanning of a femtosecond laser pulse is presented. Approximately 1.1 million microlenses, with minimized volume and high transparency at wavelengths between approximately 0.76–20 μm were fabricated within 36 min. More importantly, the size of the microlenses can be controlled by adjusting the laser power. Their high-quality infrared optical performance was also demonstrated. This method holds great promise for the development of ZnSe-based micro-optical devices.
Use of an Alignment-Free Method for the Geographical Discrimination of GTPVs Based on the GPCR Sequences
Authors: Chibssa Tesfaye Rufael , Liu Yang , Sombo Melaku , Lichoti Jacqueline Kasiiti , Erdenebaatar Janchivdorj , Boldbaatar Bazartseren , Grabherr Reingard , Settypalli Tirumala Bharani K. , Berguido Francisco J. , Loitsch Angelika , Damena Delesa , Cattoli Giovanni , Diallo Adama , Lamien Charles Euloge
Published: April 2021

Goatpox virus (GTPV) belongs to the genus Capripoxvirus, together with sheeppox virus (SPPV) and lumpy skin disease virus (LSDV). GTPV primarily affects sheep, goats and some wild ruminants. Although GTPV is only present in Africa and Asia, the recent spread of LSDV in Europe and Asia shows capripoxviruses could escape their traditional geographical regions to cause severe outbreaks in new areas. Therefore, it is crucial to develop effective source tracing of capripoxvirus infections. Earlier, conventional phylogenetic methods, based on limited samples, identified three different nucleotide sequence profiles in the G-protein-coupled chemokine receptor (GPCR) gene of GTPVs. However, this method did not differentiate GTPV strains by their geographical origins. We have sequenced the GPCR gene of additional GTPVs and analyzed them with publicly available sequences, using conventional alignment-based methods and an alignment-free approach exploiting k-mer frequencies. Using the alignment-free method, we can now classify GTPVs based on their geographical origin: African GTPVs and Asian GTPVs, which further split into Western and Central Asian (WCA) GTPVs and Eastern and Southern Asian (ESA) GTPVs. This approach will help determine the source of introduction in GTPV emergence in disease-free regions and detect the importation of additional strains in disease-endemic areas.
Unraveling the Metabolic Potential of Asgardarchaeota in a Sediment from the Mediterranean Hydrocarbon-Contaminated Water Basin Mar Piccolo (Taranto, Italy)
Authors: Firrincieli Andrea , Negroni Andrea , Zanaroli Giulio , Cappelletti Martina
Published: April 2021

Increasing number of metagenome sequencing studies have proposed a central metabolic role of still understudied Archaeal members in natural and artificial ecosystems. However, their role in hydrocarbon cycling, particularly in the anaerobic biodegradation of aliphatic and aromatic hydrocarbons, is still mostly unknown in both marine and terrestrial environments. In this work, we focused our study on the metagenomic characterization of the archaeal community inhabiting the Mar Piccolo (Taranto, Italy, central Mediterranean) sediments heavily contaminated by petroleum hydrocarbons and polychlorinated biphenyls (PCB). Among metagenomic bins reconstructed from Mar Piccolo microbial community, we have identified members of the Asgardarchaeota superphylum that has been recently proposed to play a central role in hydrocarbon cycling in natural ecosystems under anoxic conditions. In particular, we found members affiliated with Thorarchaeota, Heimdallarchaeota, and Lokiarchaeota phyla and analyzed their genomic potential involved in central metabolism and hydrocarbon biodegradation. Metabolic prediction based on metagenomic analysis identified the malonyl-CoA and benzoyl-CoA routes as the pathways involved in aliphatic and aromatic biodegradation in these Asgardarchaeota members. This is the first study to give insight into the archaeal community functionality and connection to hydrocarbon degradation in marine sediment historically contaminated by hydrocarbons.
Comparative Study of Two Insulinlike Proteases in Cryptosporidium parvum
Authors: He Wei , Lai Cong , Yang Fuxian , Li Yu , Li Na , Guo Yaqiong , Zhang Ziding , Xiao Lihua , Feng Yaoyu
Published: April 2021

Cryptosporidiumparvum is a common protozoan pathogen responsible for moderate-to-severe diarrhea in humans and animals. The small genome of C. parvum has 22 genes encoding insulinlike proteases (INS) with diverse sequences, suggesting that members of the protein family may have different biological functions in the life cycle. In this study, two members of the INS family, CpINS-4 and CpINS-6 with the Zn2+-binding motif “HXXEH” but different numbers of function domains, were expressed in Escherichia coli and used in the generation of polyclonal antibodies. In both recombinant and native proteins, CpINS-4 and CpINS-6 were spliced into multiple fragments. The antibodies generated recognized their respective recombinant and native proteins and the spliced products, but had minimum cross-reactivity with each other. Anti-CpINS-4 antibodies reacted with the middle region of sporozoites and merozoites, while CpINS-6 had the highest reactivity to the apical region. Polyclonal anti-CpINS-4 antibodies produced 36% reduction in parasite load in HCT-8 cultures at 24 h, while those against CpINS-6, which has one of the function domains missing, failed in doing so. The genes encoding both CpINS-4 and CpINS-6 had the highest expression in the invasion phase of in vitro C. parvum culture. These data suggest that CpINS-4 and CpINS-6 might be expressed in different organelles and play different biological functions in the life cycle of C. parvum.
Biological Properties and Genetic Characterization of Novel Low Pathogenic H7N3 Avian Influenza Viruses Isolated from Mallard Ducks in the Caspian Region, Dagestan, Russia
Authors: Gulyaeva Marina , De Marco Maria Alessandra , Kovalenko Ganna , Bortz Eric , Murashkina Tatiana , Yurchenko Kseniya , Facchini Marzia , Delogu Mauro , Sobolev Ivan , Gadzhiev Alimurad , Sharshov Kirill , Shestopalov Alexander
Published: April 2021

Avian influenza viruses (AIVs) are maintained in wild bird reservoirs, particularly in mallard ducks and other waterfowl. Novel evolutionary lineages of AIV that arise through genetic drift or reassortment can spread with wild bird migrations to new regions, infect a wide variety of resident bird species, and spillover to domestic poultry. The vast continental reservoir of AIVs in Eurasia harbors a wide diversity of influenza subtypes, including both highly pathogenic (HP) and low pathogenic (LP) H7 AIV. The Caspian Sea region is positioned at the intersection of major migratory flyways connecting Central Asia, Europe, the Black and Mediterranean Sea regions and Africa and holds a rich wetland and avian ecology. To understand genetic reservoirs present in the Caspian Sea region, we collected 559 cloacal swabs from Anseriformes and other species during the annual autumn migration periods in 2017 and 2018. We isolated two novel H7N3 LPAIV from mallard ducks whose H7 hemagglutinin (HA) gene was phylogenetically related to contemporaneous strains from distant Mongolia, and more closely Georgia and Ukraine, and predated the spread of this H7 LPAIV sublineage into East Asia in 2019. The N3 neuraminidase gene and internal genes were prototypical of AIV widely dispersed in wild bird reservoirs sampled along flyways connected to the Caspian region. The polymerase and nucleoprotein segments clustered with contemporaneous H5 HPAI (clade 2.3.4.4b) isolates, suggesting the wide dispersal of H7 LPAIV and the potential of this subtype for reassortment. These findings highlight the need for deeper surveillance of AIV in wild birds to better understand the extent of infection spread and evolution along spatial and temporal flyways in Eurasia.
Encystation of Entamoeba histolytica in Axenic Culture
Authors: Wesel Jordan , Shuman Jennifer , Bastuzel Irem , Dickerson Julie , Ingram-Smith Cheryl
Published: April 2021

Entamoeba histolytica is a parasitic protozoan that causes amoebic dysentery, which affects approximately 90 million people each year worldwide. E. histolytica is transmitted through ingestion of food and water contaminated with the cyst form, which undergoes excystation in the small intestine to the trophozoite form that colonizes the large intestine. The reptile pathogen Entamoeba invadens has served as a model for studying stage conversion between the trophozoite and cyst form due to lack of reproducible encystation of E. histolytica in the laboratory. Although much has been learned about encystation and excystation using E. invadens, the findings do not fully translate to E. histolytica due to the extensive genetic and host differences between these species. Here, we present the first reproducible encystation of E. histolytica in vitro. The cysts produced were viable and displayed the four characteristic hallmarks: round shape, chitinous cell wall, tetranucleation, and detergent resistance. Using flow cytometry analysis, glucose limitation and high cell density were key for encystation, as for E. invadens. Entry into encystation was enhanced by the short-chain fatty acids acetate and propionate, unlike for E. invadens. This new model will now allow the further study of E. histolytica stage conversion, transmission, and treatment.
Mitigating the Spread and Translocation of Salmonella Enteritidis in Experimentally Infected Broilers under the Influence of Different Flooring Housing Systems and Feed Particle Sizes
Authors: Ahmed Marwa F. E. , Abd El-Wahab Amr , Kriewitz Jan-Philip , Hankel Julia , Chuppava Bussarakam , Ratert Christine , Taube Venja , Visscher Christian , Kamphues Josef
Published: April 2021

This study aimed to evaluate the influences of different flooring designs and feed particle sizes on the spread of Salmonella (S.) in broiler chickens. Birds (n = 480) were allocated to four different housing systems (fully littered with and without floor heating, partially and fully slatted flooring with sand bath) and two dietary treatments (finely and coarsely ground diets) in 24 boxes. Two broilers per box were experimentally infected with S. Enteritidis (8.00 log10 CFU/bird) at d 17. Salmonella prevalence in caecal contents and the liver was highest in broilers housed on fully slatted floor until d 36/37 (88.1% and 91.5%, respectively), and lowest in litter flooring (caecal content 64.4%) and litter flooring with floor heating (liver 61.7%). In turn, broilers on littered flooring expressed the lowest Salmonella counts in caecal content at d 36/37 (2.21 ± 1.75 log10 CFU/g), partial slatted flooring the highest (3.76 ± 1.46 log10 CFU/g). The mean Salmonella count in the caecal content was significantly lower for birds fed a coarsely ground diet (0.96 and 1.94 log10 CFU/g) than a finely ground diet (5.07 and 3.34 log10 CFU/g) at d 23 and d 36/37, respectively (p < 0.0001). Slatted flooring with a sand bath did not show advantages in terms of Salmonella reduction, whereas the coarsely ground diet markedly reduced the spread of Salmonella.
Investigation of Error Distribution in the Back-Calculation of Breakage Function Model Parameters via Nonlinear Programming
Authors: Kwon Jihoe , Cho Heechan
Published: April 2021

Despite its effectiveness in determining breakage function parameters (BFPs) for quantifying breakage characteristics in mineral grinding processes, the back-calculation method has limitations owing to the uncertainty regarding the distribution of the error function. In this work, using Korean uranium and molybdenum ores, we show that the limitation can be overcome by searching over a wide range of initial values based on the conjugate gradient method. We also visualized the distribution of the sum of squares of the error in the two-dimensional parameter space. The results showed that the error function was strictly convex, and the main problem in the back-calculation of the breakage functions was the flat surface of the objective function rather than the occurrence of local minima. Based on our results, we inferred that the flat surface problem could be significantly mitigated by searching over a wide range of initial values. Back-calculation using a wide range of initial values yields BFPs similar to those obtained from single-sized-feed breakage tests (SSFBTs) up to four-dimensional parameter spaces. Therefore, by searching over a wide range of initial values, the feasibility of the back-calculation approach can be significantly improved with a minimum number of SSFBTs.
Review of Respirable Coal Mine Dust Characterization for Mass Concentration, Size Distribution and Chemical Composition
Authors: Abbasi Behrooz , Wang Xiaoliang , Chow Judith C. , Watson John G. , Peik Bijan , Nasiri Vahid , Riemenschnitter Kyle B , Elahifard Mohammadreza
Published: April 2021

Respirable coal mine dust (RCMD) exposure is associated with black lung and silicosis diseases in underground miners. Although only RCMD mass and silica concentrations are regulated, it is possible that particle size, surface area, and other chemical constituents also contribute to its adverse health effects. This review summarizes measurement technologies for RCMD mass concentrations, morphology, size distributions, and chemical compositions, with examples from published efforts where these methods have been applied. Some state-of-the-art technologies presented in this paper have not been certified as intrinsically safe, and caution should be exerted for their use in explosive environments. RCMD mass concentrations are most often obtained by filter sampling followed by gravimetric analysis, but recent requirements for real-time monitoring by continuous personal dust monitors (CPDM) enable quicker exposure risk assessments. Emerging low-cost photometers provide an opportunity for a wider deployment of real-time exposure assessment. Particle size distributions can be determined by microscopy, cascade impactors, aerodynamic spectrometers, optical particle counters, and electrical mobility analyzers, each with unique advantages and limitations. Different filter media are required to collect integrated samples over working shifts for comprehensive chemical analysis. Teflon membrane filters are used for mass by gravimetry, elements by energy dispersive X-ray fluorescence, rare-earth elements by inductively coupled plasma-mass spectrometry and mineralogy by X-ray diffraction. Quartz fiber filters are analyzed for organic, elemental, and brown carbon by thermal/optical methods and non-polar organics by thermal desorption-gas chromatography-mass spectrometry. Polycarbonate-membrane filters are analyzed for morphology and elements by scanning electron microscopy (SEM) with energy dispersive X-ray, and quartz content by Fourier-transform infrared spectroscopy and Raman spectroscopy.
Substrate Specificity of Chimeric Enzymes Formed by Interchange of the Catalytic and Specificity Domains of the 5′-Nucleotidase UshA and the 3′-Nucleotidase CpdB
Authors: Cabezas Alicia , López-Villamizar Iralis , Costas María Jesús , Cameselle José Carlos , Ribeiro João Meireles
Published: April 2021

The 5′-nucleotidase UshA and the 3′-nucleotidase CpdB from Escherichia coli are broad-specificity phosphohydrolases with similar two-domain structures. Their N-terminal domains (UshA_Ndom and CpdB_Ndom) contain the catalytic site, and their C-terminal domains (UshA_Cdom and CpdB_Cdom) contain a substrate-binding site responsible for specificity. Both enzymes show only partial overlap in their substrate specificities. So, it was decided to investigate the catalytic behavior of chimeras bearing the UshA catalytic domain and the CpdB specificity domain, or vice versa. UshA_Ndom–CpdB_Cdom and CpdB_Ndom–UshA_Cdom were constructed and tested on substrates specific to UshA (5′-AMP, CDP-choline, UDP-glucose) or to CpdB (3′-AMP), as well as on 2′,3′-cAMP and on the common phosphodiester substrate bis-4-NPP (bis-4-nitrophenylphosphate). The chimeras did show neither 5′-nucleotidase nor 3′-nucleotidase activity. When compared to UshA, UshA_Ndom–CpdB_Cdom conserved high activity on bis-4-NPP, some on CDP-choline and UDP-glucose, and displayed activity on 2′,3′-cAMP. When compared to CpdB, CpdB_Ndom–UshA_Cdom conserved phosphodiesterase activities on 2′,3′-cAMP and bis-4-NPP, and gained activity on the phosphoanhydride CDP-choline. Therefore, the non-nucleotidase activities of UshA and CpdB are not fully dependent on the interplay between domains. The specificity domains may confer the chimeras some of the phosphodiester or phosphoanhydride selectivity displayed when associated with their native partners. Contrarily, the nucleotidase activity of UshA and CpdB depends strictly on the interplay between their native catalytic and specificity domains.
Benchmarking the Fluxional Processes of Organometallic Piano-Stool Complexes
Authors: Frey Nathan C. , Dornshuld Eric Van , Webster Charles Edwin
Published: April 2021

The correlation consistent Composite Approach for transition metals (ccCA-TM) and density functional theory (DFT) computations have been applied to investigate the fluxional mechanisms of cyclooctatetraene tricarbonyl chromium ((COT)Cr(CO)3) and 1,3,5,7-tetramethylcyclooctatetraene tricarbonyl chromium, molybdenum, and tungsten ((TMCOT)M(CO)3 (M = Cr, Mo, and W)) complexes. The geometries of (COT)Cr(CO)3 were fully characterized with the PBEPBE, PBE0, B3LYP, and B97-1 functionals with various basis set/ECP combinations, while all investigated (TMCOT)M(CO)3 complexes were fully characterized with the PBEPBE, PBE0, and B3LYP methods. The energetics of the fluxional dynamics of (COT)Cr(CO)3 were examined using the correlation consistent Composite Approach for transition metals (ccCA-TM) to provide reliable energy benchmarks for corresponding DFT results. The PBE0/BS1 results are in semiquantitative agreement with the ccCA-TM results. Various transition states were identified for the fluxional processes of (COT)Cr(CO)3. The PBEPBE/BS1 energetics indicate that the 1,2-shift is the lowest energy fluxional process, while the B3LYP/BS1 energetics (where BS1 = H, C, O: 6-31G(d′); M: mod-LANL2DZ(f)-ECP) indicate the 1,3-shift having a lower electronic energy of activation than the 1,2-shift by 2.9 kcal mol−1. Notably, PBE0/BS1 describes the (CO)3 rotation to be the lowest energy process, followed by the 1,3-shift. Six transition states have been identified in the fluxional processes of each of the (TMCOT)M(CO)3 complexes (except for (TMCOT)W(CO)3), two of which are 1,2-shift transition states. The lowest-energy fluxional process of each (TMCOT)M(CO)3 complex (computed with the PBE0 functional) has a ΔG‡ of 12.6, 12.8, and 13.2 kcal mol−1 for Cr, Mo, and W complexes, respectively. Good agreement was observed between the experimental and computed 1H-NMR and 13C-NMR chemical shifts for (TMCOT)Cr(CO)3 and (TMCOT)Mo(CO)3 at three different temperature regimes, with coalescence of chemically equivalent groups at higher temperatures.
Multiple Roles of Black Raspberry Anthocyanins Protecting against Alcoholic Liver Disease
Authors: Xiao Ting , Luo Zhonghua , Guo Zhenghong , Wang Xude , Ding Meng , Wang Wei , Shen Xiangchun , Zhao Yuqing
Published: April 2021

This study aimed to investigate the protective effect of black raspberry anthocyanins (BRAs) against acute and subacute alcoholic liver disease (ALD). Network analysis and docking study were carried out to understand the potential mechanism. Thereafter, the serum biochemical parameters and liver indexes were measured, the histopathological changes of the liver were analyzed in vivo. The results showed that all tested parameters were ameliorated after the administration of BRAs with alcohol. Meanwhile, there was increased protein expression of NF-κB and TGF-β in extracted livers, which was associated with hepatitis and hepatic fibrosis. Furthermore, BRAs and cyanidin-3-O-rutinoside exhibited cytotoxic effects on t-HSC/Cl-6, HepG2, and Hep3B and induced the apoptosis of HepG2 cells; downregulated the protein expression level of Bcl-2; upregulated the level of Bax; and promoted the release of cytochrome C, cleaved caspase-9, cleaved caspase-3, and cleaved PARP in HepG2 cells. In addition, the antioxidant activity of BRAs was tested, and the chemical components were analyzed by FT-ICR MS. The results proved that BRAs exert preventive effect on ALD through the antioxidant and apoptosis pathways.