bluuebunny/crossref_metadata_2025 huggingface dataset:
Supplementary Methods and Data from Transient Activation of the Hedgehog-Gli Pathway Rescues Radiotherapy-Induced Dry Mouth via Recovering Salivary Gland Resident Macrophages
Authors: Zhao Qingguo , Zhang Linying , Hai Bo , Wang Jun , Baetge Courtney L. , Deveau Michael A. , Kapler Geoffrey M. , Feng Jian Q. , Liu Fei
Published: April 2023

Figure S1-9, Table S1
Supplementary Data from ZMYND8 Expression in Breast Cancer Cells Blocks T-Lymphocyte Surveillance to Promote Tumor Growth
Authors: Wang Yong , Luo Maowu , Chen Yan , Wang Yijie , Zhang Bo , Ren Zhenhua , Bao Lei , Wang Yanan , Wang Jennifer E. , Fu Yang-Xin , Luo Weibo , Wang Yingfei
Published: April 2023

Supplementary Table 1-2 and Figure 1-7
Supplementary Table 7 from EZH2 Regulates Pancreatic Cancer Subtype Identity and Tumor Progression via Transcriptional Repression of GATA6
Authors: Patil Shilpa , Steuber Benjamin , Kopp Waltraut , Kari Vijayalakshmi , Urbach Laura , Wang Xin , Küffer Stefan , Bohnenberger Hanibal , Spyropoulou Dimitra , Zhang Zhe , Versemann Lennart , Bösherz Mark Sebastian , Brunner Marius , Gaedcke Jochen , Ströbel Philipp , Zhang Jin-San , Neesse Albrecht , Ellenrieder Volker , Singh Shiv K. , Johnsen Steven A. , Hessmann Elisabeth
Published: April 2023

Synopsis of GEMM phenotype
Supplementary Figure 7 from EZH2 Regulates Pancreatic Cancer Subtype Identity and Tumor Progression via Transcriptional Repression of GATA6
Authors: Patil Shilpa , Steuber Benjamin , Kopp Waltraut , Kari Vijayalakshmi , Urbach Laura , Wang Xin , Küffer Stefan , Bohnenberger Hanibal , Spyropoulou Dimitra , Zhang Zhe , Versemann Lennart , Bösherz Mark Sebastian , Brunner Marius , Gaedcke Jochen , Ströbel Philipp , Zhang Jin-San , Neesse Albrecht , Ellenrieder Volker , Singh Shiv K. , Johnsen Steven A. , Hessmann Elisabeth
Published: April 2023

Supplementary Figure 7: EZH2-dependent GATA6 regulation in human PDAC specimen
Supplementary Table IV from Oncogenic TRIM37 Links Chemoresistance and Metastatic Fate in Triple-Negative Breast Cancer
Authors: Przanowski Piotr , Lou Song , Tihagam Rachisan Djiake , Mondal Tanmoy , Conlan Caroline , Shivange Gururaj , Saltani Ilyas , Singh Chandrajeet , Xing Kun , Morris Benjamin B. , Mayo Marty W. , Teixeira Luis , Lehmann-Che Jacqueline , Tushir-Singh Jogender , Bhatnagar Sanchita
Published: April 2023

Table IV: List of genes in top 5 GSEA categories whose expression significantly correlates with increased TRIM37 levels in 231-2b cells.
Supplementary Table III from Oncogenic TRIM37 Links Chemoresistance and Metastatic Fate in Triple-Negative Breast Cancer
Authors: Przanowski Piotr , Lou Song , Tihagam Rachisan Djiake , Mondal Tanmoy , Conlan Caroline , Shivange Gururaj , Saltani Ilyas , Singh Chandrajeet , Xing Kun , Morris Benjamin B. , Mayo Marty W. , Teixeira Luis , Lehmann-Che Jacqueline , Tushir-Singh Jogender , Bhatnagar Sanchita
Published: April 2023

Table III: List of tumor and metastasis suppressors whose expression reciprocally correlates with TRIM37 levels in 231-2b cells.
Supplementary Figure 3 from EZH2 Regulates Pancreatic Cancer Subtype Identity and Tumor Progression via Transcriptional Repression of GATA6
Authors: Patil Shilpa , Steuber Benjamin , Kopp Waltraut , Kari Vijayalakshmi , Urbach Laura , Wang Xin , Küffer Stefan , Bohnenberger Hanibal , Spyropoulou Dimitra , Zhang Zhe , Versemann Lennart , Bösherz Mark Sebastian , Brunner Marius , Gaedcke Jochen , Ströbel Philipp , Zhang Jin-San , Neesse Albrecht , Ellenrieder Volker , Singh Shiv K. , Johnsen Steven A. , Hessmann Elisabeth
Published: April 2023

Supplementary Figure 3: ChIP-seq analysis reveals genome-wide EZH2 occupancy
Supplementary Table I from Oncogenic TRIM37 Links Chemoresistance and Metastatic Fate in Triple-Negative Breast Cancer
Authors: Przanowski Piotr , Lou Song , Tihagam Rachisan Djiake , Mondal Tanmoy , Conlan Caroline , Shivange Gururaj , Saltani Ilyas , Singh Chandrajeet , Xing Kun , Morris Benjamin B. , Mayo Marty W. , Teixeira Luis , Lehmann-Che Jacqueline , Tushir-Singh Jogender , Bhatnagar Sanchita
Published: April 2023

Table I: List of TRIM37-associated DSB repair and cell proliferation genes expressed in non-TNBC, TNBC and normal tissue obtained from METABRIC patient cohort.
Supplementary Figure 1 from EZH2 Regulates Pancreatic Cancer Subtype Identity and Tumor Progression via Transcriptional Repression of GATA6
Authors: Patil Shilpa , Steuber Benjamin , Kopp Waltraut , Kari Vijayalakshmi , Urbach Laura , Wang Xin , Küffer Stefan , Bohnenberger Hanibal , Spyropoulou Dimitra , Zhang Zhe , Versemann Lennart , Bösherz Mark Sebastian , Brunner Marius , Gaedcke Jochen , Ströbel Philipp , Zhang Jin-San , Neesse Albrecht , Ellenrieder Volker , Singh Shiv K. , Johnsen Steven A. , Hessmann Elisabeth
Published: April 2023

Supplementary Figure 1: Homozygous and heterozygous pancreatic EZH2 depletion and their consequences on pancreatic function and mouse survival
Supplemental Video 4 from Visualization of Activated T Cells by OX40-ImmunoPET as a Strategy for Diagnosis of Acute Graft-versus-Host Disease
Authors: Alam Israt S. , Simonetta Federico , Scheller Lukas , Mayer Aaron T. , Murty Surya , Vermesh Ophir , Nobashi Tomomi W. , Lohmeyer Juliane K. , Hirai Toshihito , Baker Jeanette , Lau Kenneth H. , Negrin Robert , Gambhir Sanjiv S.
Published: April 2023

Day7_Control
Supplemental Video 3 from Visualization of Activated T Cells by OX40-ImmunoPET as a Strategy for Diagnosis of Acute Graft-versus-Host Disease
Authors: Alam Israt S. , Simonetta Federico , Scheller Lukas , Mayer Aaron T. , Murty Surya , Vermesh Ophir , Nobashi Tomomi W. , Lohmeyer Juliane K. , Hirai Toshihito , Baker Jeanette , Lau Kenneth H. , Negrin Robert , Gambhir Sanjiv S.
Published: April 2023

Day4_Control
Supplementary Data from Oncogenic TRIM37 Links Chemoresistance and Metastatic Fate in Triple-Negative Breast Cancer
Authors: Przanowski Piotr , Lou Song , Tihagam Rachisan Djiake , Mondal Tanmoy , Conlan Caroline , Shivange Gururaj , Saltani Ilyas , Singh Chandrajeet , Xing Kun , Morris Benjamin B. , Mayo Marty W. , Teixeira Luis , Lehmann-Che Jacqueline , Tushir-Singh Jogender , Bhatnagar Sanchita
Published: April 2023

Supplementary Methods and Material
Figure S6 from Oncogenic TRIM37 Links Chemoresistance and Metastatic Fate in Triple-Negative Breast Cancer
Authors: Przanowski Piotr , Lou Song , Tihagam Rachisan Djiake , Mondal Tanmoy , Conlan Caroline , Shivange Gururaj , Saltani Ilyas , Singh Chandrajeet , Xing Kun , Morris Benjamin B. , Mayo Marty W. , Teixeira Luis , Lehmann-Che Jacqueline , Tushir-Singh Jogender , Bhatnagar Sanchita
Published: April 2023

Supplementary Figure 6. Smart nanoparticles-mediated inhibition of TRIM37.
Supplemental Video 2 from Visualization of Activated T Cells by OX40-ImmunoPET as a Strategy for Diagnosis of Acute Graft-versus-Host Disease
Authors: Alam Israt S. , Simonetta Federico , Scheller Lukas , Mayer Aaron T. , Murty Surya , Vermesh Ophir , Nobashi Tomomi W. , Lohmeyer Juliane K. , Hirai Toshihito , Baker Jeanette , Lau Kenneth H. , Negrin Robert , Gambhir Sanjiv S.
Published: April 2023

Day7_GVHD
Supplemental Figures from Visualization of Activated T Cells by OX40-ImmunoPET as a Strategy for Diagnosis of Acute Graft-versus-Host Disease
Authors: Alam Israt S. , Simonetta Federico , Scheller Lukas , Mayer Aaron T. , Murty Surya , Vermesh Ophir , Nobashi Tomomi W. , Lohmeyer Juliane K. , Hirai Toshihito , Baker Jeanette , Lau Kenneth H. , Negrin Robert , Gambhir Sanjiv S.
Published: April 2023

Supplemental Figures & Legends
Supplementary Data from Hyal2 Expression in Tumor-Associated Myeloid Cells Mediates Cancer-Related Inflammation in Bladder Cancer
Authors: Dominguez-Gutierrez Paul R. , Kwenda Elizabeth P. , Donelan William , O'Malley Padraic , Crispen Paul L. , Kusmartsev Sergei
Published: April 2023

Supplementary Figures
Figure S3 from Oncogenic TRIM37 Links Chemoresistance and Metastatic Fate in Triple-Negative Breast Cancer
Authors: Przanowski Piotr , Lou Song , Tihagam Rachisan Djiake , Mondal Tanmoy , Conlan Caroline , Shivange Gururaj , Saltani Ilyas , Singh Chandrajeet , Xing Kun , Morris Benjamin B. , Mayo Marty W. , Teixeira Luis , Lehmann-Che Jacqueline , Tushir-Singh Jogender , Bhatnagar Sanchita
Published: April 2023

Supplementary Figure 3: TRIM37 promotes TNBC cell survival following chemotherapy in the absence of functional p53.
Figure S1 from Oncogenic TRIM37 Links Chemoresistance and Metastatic Fate in Triple-Negative Breast Cancer
Authors: Przanowski Piotr , Lou Song , Tihagam Rachisan Djiake , Mondal Tanmoy , Conlan Caroline , Shivange Gururaj , Saltani Ilyas , Singh Chandrajeet , Xing Kun , Morris Benjamin B. , Mayo Marty W. , Teixeira Luis , Lehmann-Che Jacqueline , Tushir-Singh Jogender , Bhatnagar Sanchita
Published: April 2023

Supplementary Figure 1. TRIM37 interacts with DSB proteins.
Supplementary Figure 4 from Myeloid-Derived Suppressor Cells Are a Major Source of Wnt5A in the Melanoma Microenvironment and Depend on Wnt5A for Full Suppressive Activity
Authors: Douglass Stephen M. , Fane Mitchell E. , Sanseviero Emilio , Ecker Brett L. , Kugel Curtis H. , Behera Reeti , Kumar Vinit , Tcyganov Evgenii N. , Yin Xiangfan , Liu Qin , Chhabra Yash , Alicea Gretchen M. , Kuruvilla Rejji , Gabrilovich Dmitry I. , Weeraratna Ashani T.
Published: April 2023

Supplementary Figure 4 - rWnt5A and Myeloid-Wnt5A Promotes an Immunosuppressive TME in Peripheral Blood and Lungs in vivo
Supplementary Figure 2 from Myeloid-Derived Suppressor Cells Are a Major Source of Wnt5A in the Melanoma Microenvironment and Depend on Wnt5A for Full Suppressive Activity
Authors: Douglass Stephen M. , Fane Mitchell E. , Sanseviero Emilio , Ecker Brett L. , Kugel Curtis H. , Behera Reeti , Kumar Vinit , Tcyganov Evgenii N. , Yin Xiangfan , Liu Qin , Chhabra Yash , Alicea Gretchen M. , Kuruvilla Rejji , Gabrilovich Dmitry I. , Weeraratna Ashani T.
Published: April 2023

Schematic Representation of Myeloid-specific Knockdown of Wnt5A.
Supplementary Fig 1 from Myeloid-Derived Suppressor Cells Are a Major Source of Wnt5A in the Melanoma Microenvironment and Depend on Wnt5A for Full Suppressive Activity
Authors: Douglass Stephen M. , Fane Mitchell E. , Sanseviero Emilio , Ecker Brett L. , Kugel Curtis H. , Behera Reeti , Kumar Vinit , Tcyganov Evgenii N. , Yin Xiangfan , Liu Qin , Chhabra Yash , Alicea Gretchen M. , Kuruvilla Rejji , Gabrilovich Dmitry I. , Weeraratna Ashani T.
Published: April 2023

upplementary Figure 1 - Wnt5A Decreases Proliferation Specifically in Tumors Via the Recruitment of MDSCs
Supplementary Table 7 from Hypoxic Glioma Stem Cell–Derived Exosomes Containing Linc01060 Promote Progression of Glioma by Regulating the MZF1/c-Myc/HIF1α Axis
Authors: Li Junjun , Liao Tingting , Liu Hongya , Yuan Hongliang , Ouyang Taohui , Wang Jiajing , Chai Songshan , Li Jinsong , Chen Jingchao , Li Xiang , Zhao Hongyang , Xiong Nanxiang
Published: April 2023

Supplementary Tables 7: Univariate and multivariate for clinicopathological features associated with various prognostic parameters of 70 glioma patients by Cox-regression analysis.
Supplementary Table 6 from Hypoxic Glioma Stem Cell–Derived Exosomes Containing Linc01060 Promote Progression of Glioma by Regulating the MZF1/c-Myc/HIF1α Axis
Authors: Li Junjun , Liao Tingting , Liu Hongya , Yuan Hongliang , Ouyang Taohui , Wang Jiajing , Chai Songshan , Li Jinsong , Chen Jingchao , Li Xiang , Zhao Hongyang , Xiong Nanxiang
Published: April 2023

Supplementary Tables 6: Correlation of the expression levels of Linc01060 in glioma tissues with clinicopathologic features.
Supplementary Material and Methods from Frizzled-7 Identifies Platinum-Tolerant Ovarian Cancer Cells Susceptible to Ferroptosis
Authors: Wang Yinu , Zhao Guangyuan , Condello Salvatore , Huang Hao , Cardenas Horacio , Tanner Edward J. , Wei JianJun , Ji Yanrong , Li Junjie , Tan Yuying , Davuluri Ramana V. , Peter Marcus E. , Cheng Ji-Xin , Matei Daniela
Published: April 2023

Supplemental Methods and Material
Supplementary Table 4 from Hypoxic Glioma Stem Cell–Derived Exosomes Containing Linc01060 Promote Progression of Glioma by Regulating the MZF1/c-Myc/HIF1α Axis
Authors: Li Junjun , Liao Tingting , Liu Hongya , Yuan Hongliang , Ouyang Taohui , Wang Jiajing , Chai Songshan , Li Jinsong , Chen Jingchao , Li Xiang , Zhao Hongyang , Xiong Nanxiang
Published: April 2023

Table S4: all the primers of related genes.
Supplementary Table 3 from Hypoxic Glioma Stem Cell–Derived Exosomes Containing Linc01060 Promote Progression of Glioma by Regulating the MZF1/c-Myc/HIF1α Axis
Authors: Li Junjun , Liao Tingting , Liu Hongya , Yuan Hongliang , Ouyang Taohui , Wang Jiajing , Chai Songshan , Li Jinsong , Chen Jingchao , Li Xiang , Zhao Hongyang , Xiong Nanxiang
Published: April 2023

Table S3: all the antibodies used and sequences of probes for Linc01060 RNA FISH.
Supplementary Data from Myeloma-Modified Adipocytes Exhibit Metabolic Dysfunction and a Senescence-Associated Secretory Phenotype
Authors: Fairfield Heather , Dudakovic Amel , Khatib Casper M. , Farrell Mariah , Costa Samantha , Falank Carolyne , Hinge Maja , Murphy Connor S. , DeMambro Victoria , Pettitt Jessica A. , Lary Christine W. , Driscoll Heather E. , McDonald Michelle M. , Kassem Moustapha , Rosen Clifford , Andersen Thomas L. , van Wijnen Andre J. , Jafari Abbas , Reagan Michaela R.
Published: April 2023

Supplemental Figures and Supplemental Tables
Supplementary Table 2 from Hypoxic Glioma Stem Cell–Derived Exosomes Containing Linc01060 Promote Progression of Glioma by Regulating the MZF1/c-Myc/HIF1α Axis
Authors: Li Junjun , Liao Tingting , Liu Hongya , Yuan Hongliang , Ouyang Taohui , Wang Jiajing , Chai Songshan , Li Jinsong , Chen Jingchao , Li Xiang , Zhao Hongyang , Xiong Nanxiang
Published: April 2023

Table S2: the primers used in ChIP-qPCR.
Supplementary Table 1 from Hypoxic Glioma Stem Cell–Derived Exosomes Containing Linc01060 Promote Progression of Glioma by Regulating the MZF1/c-Myc/HIF1α Axis
Authors: Li Junjun , Liao Tingting , Liu Hongya , Yuan Hongliang , Ouyang Taohui , Wang Jiajing , Chai Songshan , Li Jinsong , Chen Jingchao , Li Xiang , Zhao Hongyang , Xiong Nanxiang
Published: April 2023

Table S1: the sequences of relative siRNAs and shRNAs.
Supplementary Material from Hypoxic Glioma Stem Cell–Derived Exosomes Containing Linc01060 Promote Progression of Glioma by Regulating the MZF1/c-Myc/HIF1α Axis
Authors: Li Junjun , Liao Tingting , Liu Hongya , Yuan Hongliang , Ouyang Taohui , Wang Jiajing , Chai Songshan , Li Jinsong , Chen Jingchao , Li Xiang , Zhao Hongyang , Xiong Nanxiang
Published: April 2023

Supplementary materials & methods and figure legends
Supplementary Figures from Hypoxic Glioma Stem Cell–Derived Exosomes Containing Linc01060 Promote Progression of Glioma by Regulating the MZF1/c-Myc/HIF1α Axis
Authors: Li Junjun , Liao Tingting , Liu Hongya , Yuan Hongliang , Ouyang Taohui , Wang Jiajing , Chai Songshan , Li Jinsong , Chen Jingchao , Li Xiang , Zhao Hongyang , Xiong Nanxiang
Published: April 2023

Supplementary Figures 1-12
Supplementary Data from Genome-Wide DNA Methylation Profiling of Esophageal Squamous Cell Carcinoma from Global High-Incidence Regions Identifies Crucial Genes and Potential Cancer Markers
Authors: Talukdar Fazlur Rahman , Soares Lima Sheila C. , Khoueiry Rita , Laskar Ruhina Shirin , Cuenin Cyrille , Sorroche Bruna Pereira , Boisson Anne-Claire , Abedi-Ardekani Behnoush , Carreira Christine , Menya Diana , Dzamalala Charles P. , Assefa Mathewos , Aseffa Abraham , Miranda-Gonçalves Vera , Jerónimo Carmen , Henrique Rui M. , Shakeri Ramin , Malekzadeh Reza , Gasmelseed Nagla , Ellaithi Mona , Gangane Nitin , Middleton Daniel R.S. , Le Calvez-Kelm Florence , Ghantous Akram , Roux Maria Leon , Schüz Joachim , McCormack Valerie , Parker M. Iqbal , Pinto Luis Felipe Ribeiro , Herceg Zdenko
Published: April 2023

16 supplementary tables
Figures from Genome-Wide DNA Methylation Profiling of Esophageal Squamous Cell Carcinoma from Global High-Incidence Regions Identifies Crucial Genes and Potential Cancer Markers
Authors: Talukdar Fazlur Rahman , Soares Lima Sheila C. , Khoueiry Rita , Laskar Ruhina Shirin , Cuenin Cyrille , Sorroche Bruna Pereira , Boisson Anne-Claire , Abedi-Ardekani Behnoush , Carreira Christine , Menya Diana , Dzamalala Charles P. , Assefa Mathewos , Aseffa Abraham , Miranda-Gonçalves Vera , Jerónimo Carmen , Henrique Rui M. , Shakeri Ramin , Malekzadeh Reza , Gasmelseed Nagla , Ellaithi Mona , Gangane Nitin , Middleton Daniel R.S. , Le Calvez-Kelm Florence , Ghantous Akram , Roux Maria Leon , Schüz Joachim , McCormack Valerie , Parker M. Iqbal , Pinto Luis Felipe Ribeiro , Herceg Zdenko
Published: April 2023

7 supplementary figures
Supplementary Data from Hypoxic Glioma Stem Cell–Derived Exosomes Containing Linc01060 Promote Progression of Glioma by Regulating the MZF1/c-Myc/HIF1α Axis
Authors: Li Junjun , Liao Tingting , Liu Hongya , Yuan Hongliang , Ouyang Taohui , Wang Jiajing , Chai Songshan , Li Jinsong , Chen Jingchao , Li Xiang , Zhao Hongyang , Xiong Nanxiang
Published: April 2023

A descriptive caption for the 7 Supplemental Tables
Supplementary Table S3 from E7386, a Selective Inhibitor of the Interaction between β-Catenin and CBP, Exerts Antitumor Activity in Tumor Models with Activated Canonical Wnt Signaling
Authors: Yamada Kazuhiko , Hori Yusaku , Inoue Satoshi , Yamamoto Yuji , Iso Kentaro , Kamiyama Hiroshi , Yamaguchi Atsumi , Kimura Takayuki , Uesugi Mai , Ito Junichi , Matsuki Masahiro , Nakamoto Kazutaka , Harada Hitoshi , Yoneda Naoki , Takemura Atsushi , Kushida Ikuo , Wakayama Naomi , Kubara Kenji , Kato Yu , Semba Taro , Yokoi Akira , Matsukura Masayuki , Odagami Takenao , Iwata Masao , Tsuruoka Akihiko , Uenaka Toshimitsu , Matsui Junji , Matsushima Tomohiro , Nomoto Kenichi , Kouji Hiroyuki , Owa Takashi , Funahashi Yasuhiro , Ozawa Yoichi
Published: April 2023

The list of Topologically significant genes by RNA-Seq analysis
Supplementary Figures from E7386, a Selective Inhibitor of the Interaction between β-Catenin and CBP, Exerts Antitumor Activity in Tumor Models with Activated Canonical Wnt Signaling
Authors: Yamada Kazuhiko , Hori Yusaku , Inoue Satoshi , Yamamoto Yuji , Iso Kentaro , Kamiyama Hiroshi , Yamaguchi Atsumi , Kimura Takayuki , Uesugi Mai , Ito Junichi , Matsuki Masahiro , Nakamoto Kazutaka , Harada Hitoshi , Yoneda Naoki , Takemura Atsushi , Kushida Ikuo , Wakayama Naomi , Kubara Kenji , Kato Yu , Semba Taro , Yokoi Akira , Matsukura Masayuki , Odagami Takenao , Iwata Masao , Tsuruoka Akihiko , Uenaka Toshimitsu , Matsui Junji , Matsushima Tomohiro , Nomoto Kenichi , Kouji Hiroyuki , Owa Takashi , Funahashi Yasuhiro , Ozawa Yoichi
Published: April 2023

Supplementary Figures 1-9. Supplementary Fig. S1 Wnt/β-catenin-dependent reporter activity in ECC10 cells. Supplementary Fig. S2 Effect of E7386 on the interaction between β-catenin and p300 in ECC10 cells. Supplementary Fig. S3 Comparison of IC50 values among β-catenin/CBP inhibitors, as determined by HEK-293 TCF/LEF reporter assay. Supplementary Fig. S4 Upstream regulators of gene expression changes in whisker follicle tissues of ApcMin/+ mice treated with E7386. Supplementary Fig. S5 Inhibitory activity of E7386 against cell growth in ECC10 cells. Supplementary Fig. S6 Antitumor activity of E7386 and ICG-001 in a human ECC10 gastric tumor xenograft model. Supplementary Fig. S7 Gating strategy for the flow cytometry analysis of myeloid and T-cell populations. Supplementary Fig. S8 Flow cytometry analysis of the effect of E7386 on immune cell populations in the MMTV-Wnt1 model. Supplementary Fig. S9 Effect of PRI-724 on spontaneous intestinal polyp formation in ApcMin/+ mice.
Table S3 from Chromatin Looping Shapes KLF5-Dependent Transcriptional Programs in Human Epithelial Cancers
Authors: Liu Yanli , Guo Bingqian , Aguilera-Jimenez Estrella , Chu Vivian S. , Zhou Jin , Wu Zhong , Francis Joshua M. , Yang Xiaojun , Choi Peter S. , Bailey Swneke D. , Zhang Xiaoyang
Published: April 2023

Cancer type enrichment in KLF5-dependent cell lines
Supplementary Data from Single-Cell Transcriptomic Heterogeneity in Invasive Ductal and Lobular Breast Cancer Cells
Authors: Chen Fangyuan , Ding Kai , Priedigkeit Nolan , Elangovan Ashuvinee , Levine Kevin M. , Carleton Neil , Savariau Laura , Atkinson Jennifer M. , Oesterreich Steffi , Lee Adrian V.
Published: April 2023

Supplementary Materials and Methods
FigS4 from Single-Cell Transcriptomic Heterogeneity in Invasive Ductal and Lobular Breast Cancer Cells
Authors: Chen Fangyuan , Ding Kai , Priedigkeit Nolan , Elangovan Ashuvinee , Levine Kevin M. , Carleton Neil , Savariau Laura , Atkinson Jennifer M. , Oesterreich Steffi , Lee Adrian V.
Published: April 2023

FigS4
Supplementary Data from Patterns of Human Leukocyte Antigen Class I and Class II Associations and Cancer
Authors: Liu Zhiwei , Derkach Andriy , Yu Kelly J. , Yeager Meredith , Chang Yu-Sun , Chen Chien-Jen , Gyllensten Ulf , Lan Qing , Lee Mei-Hsuan , McKay James D. , Rothman Nathaniel , Yang Hwai-I , Hildesheim Allan , Pfeiffer Ruth M.
Published: April 2023

Supplementary Materials and Tables
Supplemental Figures from Patterns of Human Leukocyte Antigen Class I and Class II Associations and Cancer
Authors: Liu Zhiwei , Derkach Andriy , Yu Kelly J. , Yeager Meredith , Chang Yu-Sun , Chen Chien-Jen , Gyllensten Ulf , Lan Qing , Lee Mei-Hsuan , McKay James D. , Rothman Nathaniel , Yang Hwai-I , Hildesheim Allan , Pfeiffer Ruth M.
Published: April 2023

Supplementary Figures 1-5.
Supplementary Tables S1-S9 from The Transcriptomic Landscape of Mismatch Repair-Deficient Intestinal Stem Cells
Authors: Bommi Prashant V. , Bowen Charles M. , Reyes-Uribe Laura , Wu Wenhui , Katayama Hiroyuki , Rocha Pedro , Parra Edwin R. , Francisco-Cruz Alejandro , Ozcan Zuhal , Tosti Elena , Willis Jason A. , Wu Hong , Taggart Melissa W. , Burks Jared K. , Lynch Patrick M. , Edelmann Winfried , Scheet Paul A. , Wistuba Ignacio I. , Sinha Krishna M. , Hanash Samir M. , Vilar Eduardo
Published: April 2023

Supplementary Tables S1-S9
Supplementary Figures S1-S6 from The Transcriptomic Landscape of Mismatch Repair-Deficient Intestinal Stem Cells
Authors: Bommi Prashant V. , Bowen Charles M. , Reyes-Uribe Laura , Wu Wenhui , Katayama Hiroyuki , Rocha Pedro , Parra Edwin R. , Francisco-Cruz Alejandro , Ozcan Zuhal , Tosti Elena , Willis Jason A. , Wu Hong , Taggart Melissa W. , Burks Jared K. , Lynch Patrick M. , Edelmann Winfried , Scheet Paul A. , Wistuba Ignacio I. , Sinha Krishna M. , Hanash Samir M. , Vilar Eduardo
Published: April 2023

Supplementary Figures S1-S6
Supplementary tables 1-7 from PWD/Ph-Encoded Genetic Variants Modulate the Cellular Wnt/β-Catenin Response to Suppress ApcMin-Triggered Intestinal Tumor Formation
Authors: Farrall Alexandra L. , Lienhard Matthias , Grimm Christina , Kuhl Heiner , Sluka Susanna H.M. , Caparros Marta , Forejt Jiri , Timmermann Bernd , Herwig Ralf , Herrmann Bernhard G. , Morkel Markus
Published: April 2023

Supplementary tables 1-7. Supplementary Table 1: GSEA signatures and references (Wnt target genes are taken from the HALLMARK Signature). Supplementary Table 2: 58 differentially expressed genes on chromosome 5, B6 vs C5 APC min normal intestine. Supplementary Table 3: 116 differentially expressed genes not located on chromosome 5, B6 vs C5 APC min normal intestine. Supplementary table 4: Differentially expressed genes on chromosome 5 regulated in cis, trans, or both. Supplementary table 5: Candidate modifier genes differentially expressed between B6 or PWD chromosome 5. Supplementary Table 6: Polymorphisms in human orthologs of mouse genes located on chromosome 5, polymorphic between B6 and PWD, and expressed in the intestine. Supplementary Table 7: PWD polymorphisms on chr5 in genes that are expressed in the intestine and/or in adenoma.
Supplementary Data from PWD/Ph-Encoded Genetic Variants Modulate the Cellular Wnt/β-Catenin Response to Suppress ApcMin-Triggered Intestinal Tumor Formation
Authors: Farrall Alexandra L. , Lienhard Matthias , Grimm Christina , Kuhl Heiner , Sluka Susanna H.M. , Caparros Marta , Forejt Jiri , Timmermann Bernd , Herwig Ralf , Herrmann Bernhard G. , Morkel Markus
Published: April 2023

Supplementary Figures 1-7. Supplementary Figure 1: Assembly of the PWD genome and alignment to the C57BL/6 genome. Supplementary Figure 2: RNA-seq read assignment. Supplementary Figure 3: MeDIP-seq quality controls. Supplementary Figure 4: Histology and distribution of tumors in B6 x PWD consomic mice. Supplementary Figure 5: Transcriptome analyses identify modifier candidate genes on other chromosomes than chromosome 5. Supplementary Figure 6: Strain-specific DNA methylation on chromosome 5 is correlated to CpG availability. Supplementary Figure 7: Assessment of cell types in the intestinal crypt.
Supplementary table S1 from Misannotated Multi-Nucleotide Variants in Public Cancer Genomics Datasets Lead to Inaccurate Mutation Calls with Significant Implications
Authors: Srinivasan Sujaya , Kalinava Natallia , Aldana Rafael , Li Zhipan , van Hagen Sjoerd , Rodenburg Sander Y.A. , Wind-Rotolo Megan , Qian Xiaozhong , Sasson Ariella S. , Tang Hao , Kirov Stefan
Published: April 2023

Comparison of MNV detection from VCFs vs MAFs
Supplementary Data from A Positive Feedback Loop of AKR1C3-Mediated Activation of NF-κB and STAT3 Facilitates Proliferation and Metastasis in Hepatocellular Carcinoma
Authors: Zhou Qingqing , Tian Wei , Jiang Zhiyuan , Huang Tingting , Ge Chao , Liu Tengfei , Zhao Fangyu , Chen Taoyang , Cui Ying , Li Hong , Yao Ming , Li Jinjun , Tian Hua
Published: April 2023

Supplementary Data, including Sup. Tables 1-5 and Sup. Figures 1-30.
Supplementary Table S2 from Misannotated Multi-Nucleotide Variants in Public Cancer Genomics Datasets Lead to Inaccurate Mutation Calls with Significant Implications
Authors: Srinivasan Sujaya , Kalinava Natallia , Aldana Rafael , Li Zhipan , van Hagen Sjoerd , Rodenburg Sander Y.A. , Wind-Rotolo Megan , Qian Xiaozhong , Sasson Ariella S. , Tang Hao , Kirov Stefan
Published: April 2023

Examples of individual BRAF V600, KRAS G12 and NRAS Q61 misannotated MNVs
Table S1 from Targeting CDK12 for Cancer Therapy: Function, Mechanism, and Drug Discovery
Authors: Liu Hui , Liu Kangdong , Dong Zigang
Published: April 2023

Clinical trials of CDK12 mutation in cancers
Supplementary Table S3 from Cancers from Novel Pole-Mutant Mouse Models Provide Insights into Polymerase-Mediated Hypermutagenesis and Immune Checkpoint Blockade
Authors: Galati Melissa A. , Hodel Karl P. , Gams Miki S. , Sudhaman Sumedha , Bridge Taylor , Zahurancik Walter J. , Ungerleider Nathan A. , Park Vivian S. , Ercan Ayse B. , Joksimovic Lazar , Siddiqui Iram , Siddaway Robert , Edwards Melissa , de Borja Richard , Elshaer Dana , Chung Jiil , Forster Victoria J. , Nunes Nuno M. , Aronson Melyssa , Wang Xia , Ramdas Jagadeesh , Seeley Andrea , Sarosiek Tomasz , Dunn Gavin P. , Byrd Jonathan N. , Mordechai Oz , Durno Carol , Martin Alberto , Shlien Adam , Bouffet Eric , Suo Zucai , Jackson James G. , Hawkins Cynthia E. , Guidos Cynthia J. , Pursell Zachary F. , Tabori Uri
Published: April 2023

POLE germline mutations from the IRRDC and literature
Supplementary Table 2 from Heterogeneity and Clonal Evolution of Acquired PARP Inhibitor Resistance in TP53- and BRCA1-Deficient Cells
Authors: Färkkilä Anniina , Rodríguez Alfredo , Oikkonen Jaana , Gulhan Doga C. , Nguyen Huy , Domínguez Julieta , Ramos Sandra , Mills Caitlin E. , Pérez-Villatoro Fernando , Lazaro Jean-Bernard , Zhou Jia , Clairmont Connor S. , Moreau Lisa A. , Park Peter J. , Sorger Peter K. , Hautaniemi Sampsa , Frias Sara , D'Andrea Alan D.
Published: April 2023

Supplementary Table 2 showing the positive and negative GSEA results for each cell line.
Supplementary Data from A Notch-Dependent Inflammatory Feedback Circuit between Macrophages and Cancer Cells Regulates Pancreatic Cancer Metastasis
Authors: Geng Yawen , Fan Jie , Chen Lianyu , Zhang Chenyue , Qu Chao , Qian Ling , Chen Kun , Meng Zhiqiang , Chen Zhen , Wang Peng
Published: April 2023

Supplementary Materials and Methods; Fig. S1. Effects of miR-124/JAG1 signaling on pancreatic cancer cell invasion in vitro; Fig. S2. JAG1 expression in PANC1 xenografted tumors and human PDAC specimens; Fig. S3. JAG1 affects cancer cell invasion dependent on the involvement of TAMs in pancreatic cancer; Fig. S4. Macrophage activation induced by different human pancreatic cancer cell lines; Fig. S5. Effects of JAG1 on macrophage activation; Fig. S6. Screening for cytokines that contribute to macrophage activation. Fig. S7. Notch signaling-dependent cytokine secretion contributes to macrophage activation; Fig. S8. Activated macrophages promote pancreatic cancer cell invasion via IL-6; Fig. S9. Expression of the circuit components in murine Panc02 tumors treated with neutralizing antibodies; Fig. S10. Neutralizing antibodies on liver metastasis in murine KPC1199 mouse model; Fig. S11. Effects of Notch signaling on immune microenvironment; Fig. S12. Correlation between the components of the circuit in PDAC tissue; Table S1. Correlation between JAG1 expression levels and clinicopathological factors in PDAC (N=65); Table S2. Univariate and multivariate Cox regression analyses of JAG1 expression for OS of patients with PDAC (N=65); Table S3. Antibodies used in this study; Table S4. Primers/oligonucleotides used in this study.
Video 1 from Interactive Classification of Whole-Slide Imaging Data for Cancer Researchers
Authors: Lee Sanghoon , Amgad Mohamed , Mobadersany Pooya , McCormick Matt , Pollack Brian P. , Elfandy Habiba , Hussein Hagar , Gutman David A. , Cooper Lee A.D.
Published: April 2023

Software preview video.
Supplementary Data from Functional Determinants of Cell Cycle Plasticity and Sensitivity to CDK4/6 Inhibition
Authors: Kumarasamy Vishnu , Vail Paris , Nambiar Ram , Witkiewicz Agnieszka K. , Knudsen Erik S.
Published: April 2023

Supplementary information
Supplementary Data from Functional Determinants of Cell Cycle Plasticity and Sensitivity to CDK4/6 Inhibition
Authors: Kumarasamy Vishnu , Vail Paris , Nambiar Ram , Witkiewicz Agnieszka K. , Knudsen Erik S.
Published: April 2023

Supplementary Table 1
Supplementary Data from Functional Determinants of Cell Cycle Plasticity and Sensitivity to CDK4/6 Inhibition
Authors: Kumarasamy Vishnu , Vail Paris , Nambiar Ram , Witkiewicz Agnieszka K. , Knudsen Erik S.
Published: April 2023

Supplementary Table 2
Supplementary Table 3 from Differential Regulation of Cancer Progression by CDK4/6 Plays a Central Role in DNA Replication and Repair Pathways
Authors: Dai Meiou , Boudreault Julien , Wang Ni , Poulet Sophie , Daliah Girija , Yan Gang , Moamer Alaa , Burgos Sergio A. , Sabri Siham , Ali Suhad , Lebrun Jean-Jacques
Published: April 2023

Supplementary Table 3
Supplementary Data from Interactive Classification of Whole-Slide Imaging Data for Cancer Researchers
Authors: Lee Sanghoon , Amgad Mohamed , Mobadersany Pooya , McCormick Matt , Pollack Brian P. , Elfandy Habiba , Hussein Hagar , Gutman David A. , Cooper Lee A.D.
Published: April 2023

Supplementary figures and table legends.
Supplementary Table 1 from Targeting MARCO and IL37R on Immunosuppressive Macrophages in Lung Cancer Blocks Regulatory T Cells and Supports Cytotoxic Lymphocyte Function
Authors: La Fleur Linnéa , Botling Johan , He Fei , Pelicano Catarina , Zhou Chikai , He Chenfei , Palano Giorgia , Mezheyeuski Artur , Micke Patrick , Ravetch Jeffrey V. , Karlsson Mikael C. I. , Sarhan Dhifaf
Published: April 2023

Patient characteristics
Supplementary Table 1 from Differential Regulation of Cancer Progression by CDK4/6 Plays a Central Role in DNA Replication and Repair Pathways
Authors: Dai Meiou , Boudreault Julien , Wang Ni , Poulet Sophie , Daliah Girija , Yan Gang , Moamer Alaa , Burgos Sergio A. , Sabri Siham , Ali Suhad , Lebrun Jean-Jacques
Published: April 2023

Supplementary Table 1
Supplementary Data from Targeting MARCO and IL37R on Immunosuppressive Macrophages in Lung Cancer Blocks Regulatory T Cells and Supports Cytotoxic Lymphocyte Function
Authors: La Fleur Linnéa , Botling Johan , He Fei , Pelicano Catarina , Zhou Chikai , He Chenfei , Palano Giorgia , Mezheyeuski Artur , Micke Patrick , Ravetch Jeffrey V. , Karlsson Mikael C. I. , Sarhan Dhifaf
Published: April 2023

Supplementary Figures 1-4
Supplementary Data S1-S7 and Table S1 from Targeting ACSS2 with a Transition-State Mimetic Inhibits Triple-Negative Breast Cancer Growth
Authors: Miller Katelyn D. , Pniewski Katherine , Perry Caroline E. , Papp Sara B. , Shaffer Joshua D. , Velasco-Silva Jesse N. , Casciano Jessica C. , Aramburu Tomas M. , Srikanth Yellamelli V.V. , Cassel Joel , Skordalakes Emmanuel , Kossenkov Andrew V. , Salvino Joseph M. , Schug Zachary T.
Published: April 2023

Supporting information for Figures 1 through 5.
Supplementary Data from Differential Regulation of Cancer Progression by CDK4/6 Plays a Central Role in DNA Replication and Repair Pathways
Authors: Dai Meiou , Boudreault Julien , Wang Ni , Poulet Sophie , Daliah Girija , Yan Gang , Moamer Alaa , Burgos Sergio A. , Sabri Siham , Ali Suhad , Lebrun Jean-Jacques
Published: April 2023

Supplementary Figure 2
Supplementary Table S7 from Targeting p300/CBP Attenuates Hepatocellular Carcinoma Progression through Epigenetic Regulation of Metabolism
Authors: Cai Ling-Yan , Chen Shi-Jie , Xiao Sen-Hao , Sun Qin-Juan , Ding Chen-Hong , Zheng Bai-Nan , Zhu Xin-Yan , Liu Shu-Qing , Yang Feng , Yang Ya-Xi , Zhou Bing , Luo Cheng , Zhang Xin , Xie Wei-Fen
Published: April 2023

Supplementary Table S7. HPLC analysis of nucleotides
Supplementary Figure from JMJD6 Is a Druggable Oxygenase That Regulates AR-V7 Expression in Prostate Cancer
Authors: Paschalis Alec , Welti Jonathan , Neeb Antje J. , Yuan Wei , Figueiredo Ines , Pereira Rita , Ferreira Ana , Riisnaes Ruth , Rodrigues Daniel Nava , Jiménez-Vacas Juan M. , Kim Soojin , Uo Takuma , Micco Patrizio Di , Tumber Anthony , Islam Md. Saiful , Moesser Marc A. , Abboud Martine , Kawamura Akane , Gurel Bora , Christova Rossitza , Gil Veronica S. , Buroni Lorenzo , Crespo Mateus , Miranda Susana , Lambros Maryou B. , Carreira Suzanne , Tunariu Nina , Alimonti Andrea , Al-Lazikani Bissan , Schofield Christopher J. , Plymate Stephen R. , Sharp Adam , de Bono Johann S.
Published: April 2023

Supplementary Figure from JMJD6 Is a Druggable Oxygenase That Regulates AR-V7 Expression in Prostate Cancer
Supplementary Table S6 from Targeting p300/CBP Attenuates Hepatocellular Carcinoma Progression through Epigenetic Regulation of Metabolism
Authors: Cai Ling-Yan , Chen Shi-Jie , Xiao Sen-Hao , Sun Qin-Juan , Ding Chen-Hong , Zheng Bai-Nan , Zhu Xin-Yan , Liu Shu-Qing , Yang Feng , Yang Ya-Xi , Zhou Bing , Luo Cheng , Zhang Xin , Xie Wei-Fen
Published: April 2023

Supplementary Table S6. Pathway analysis of down integrated genes in treatmentVScontrol
Table S2 from Endocytosis-Mediated Replenishment of Amino Acids Favors Cancer Cell Proliferation and Survival in Chromophobe Renal Cell Carcinoma
Authors: Xiao Yi , Rabien Anja , Buschow René , Amtislavskiy Vyacheslav , Busch Jonas , Kilic Ergin , Villegas Sonia L. , Timmermann Bernd , Schütte Moritz , Mielke Thorsten , Yaspo Marie-Laure , Jung Klaus , Meierhofer David
Published: April 2023

Somatic nonsynonymous SNV and indels identified in our corhort.
Supplementary Table S4 from Targeting p300/CBP Attenuates Hepatocellular Carcinoma Progression through Epigenetic Regulation of Metabolism
Authors: Cai Ling-Yan , Chen Shi-Jie , Xiao Sen-Hao , Sun Qin-Juan , Ding Chen-Hong , Zheng Bai-Nan , Zhu Xin-Yan , Liu Shu-Qing , Yang Feng , Yang Ya-Xi , Zhou Bing , Luo Cheng , Zhang Xin , Xie Wei-Fen
Published: April 2023

Supplementary Table S4. GO analysis of annoated genes after B029-2 treatment
Table S1 from Endocytosis-Mediated Replenishment of Amino Acids Favors Cancer Cell Proliferation and Survival in Chromophobe Renal Cell Carcinoma
Authors: Xiao Yi , Rabien Anja , Buschow René , Amtislavskiy Vyacheslav , Busch Jonas , Kilic Ergin , Villegas Sonia L. , Timmermann Bernd , Schütte Moritz , Mielke Thorsten , Yaspo Marie-Laure , Jung Klaus , Meierhofer David
Published: April 2023

Proteome profiling and a subsequent GSEA analysis of UOK276 cells supplemented with 1% amino acids in the presence or absence of 2.5% BSA versus a complete medium.
Supplementary Table S3 from Targeting p300/CBP Attenuates Hepatocellular Carcinoma Progression through Epigenetic Regulation of Metabolism
Authors: Cai Ling-Yan , Chen Shi-Jie , Xiao Sen-Hao , Sun Qin-Juan , Ding Chen-Hong , Zheng Bai-Nan , Zhu Xin-Yan , Liu Shu-Qing , Yang Feng , Yang Ya-Xi , Zhou Bing , Luo Cheng , Zhang Xin , Xie Wei-Fen
Published: April 2023

Supplementary Table S3. Pathway analysis of differentially expressed genes in RNA-seq
Movie S1 from Endocytosis-Mediated Replenishment of Amino Acids Favors Cancer Cell Proliferation and Survival in Chromophobe Renal Cell Carcinoma
Authors: Xiao Yi , Rabien Anja , Buschow René , Amtislavskiy Vyacheslav , Busch Jonas , Kilic Ergin , Villegas Sonia L. , Timmermann Bernd , Schütte Moritz , Mielke Thorsten , Yaspo Marie-Laure , Jung Klaus , Meierhofer David
Published: April 2023

Live-cell fluorescence imaging showed that the DQ-Red BSA accumulated in UOK276 cells over time, providing evidence that macropinocytosis is an established process in chRCC cells to uptake macromolecules as nutrient source.
Supplementary Data from KIF15-Mediated Stabilization of AR and AR-V7 Contributes to Enzalutamide Resistance in Prostate Cancer
Authors: Gao Lin , Zhang Wenbo , Zhang Jing , Liu Junmei , Sun Feifei , Liu Hui , Hu Jing , Wang Xin , Wang Xueli , Su Peng , Chen Shouzhen , Qu Sifeng , Shi Benkang , Xiong Xueting , Chen Weiwen , Dong Xuesen , Han Bo
Published: April 2023

Supplementary Tables
Video 4 B from PLK1 Induces Chromosomal Instability and Overrides Cell-Cycle Checkpoints to Drive Tumorigenesis
Authors: Gheghiani Lilia , Wang Lei , Zhang Youwei , Moore Xavier T.R. , Zhang Jinglei , Smith Steven C. , Tian Yijun , Wang Liang , Turner Kristi , Jackson-Cook Colleen K. , Mukhopadhyay Nitai D. , Fu Zheng
Published: April 2023

Video 4 B from PLK1 Induces Chromosomal Instability and Overrides Cell-Cycle Checkpoints to Drive Tumorigenesis
Video 4 A from PLK1 Induces Chromosomal Instability and Overrides Cell-Cycle Checkpoints to Drive Tumorigenesis
Authors: Gheghiani Lilia , Wang Lei , Zhang Youwei , Moore Xavier T.R. , Zhang Jinglei , Smith Steven C. , Tian Yijun , Wang Liang , Turner Kristi , Jackson-Cook Colleen K. , Mukhopadhyay Nitai D. , Fu Zheng
Published: April 2023

Video 4 A from PLK1 Induces Chromosomal Instability and Overrides Cell-Cycle Checkpoints to Drive Tumorigenesis
Video 1 from PLK1 Induces Chromosomal Instability and Overrides Cell-Cycle Checkpoints to Drive Tumorigenesis
Authors: Gheghiani Lilia , Wang Lei , Zhang Youwei , Moore Xavier T.R. , Zhang Jinglei , Smith Steven C. , Tian Yijun , Wang Liang , Turner Kristi , Jackson-Cook Colleen K. , Mukhopadhyay Nitai D. , Fu Zheng
Published: April 2023

Video 1 from PLK1 Induces Chromosomal Instability and Overrides Cell-Cycle Checkpoints to Drive Tumorigenesis
Supplementary Data from PLK1 Induces Chromosomal Instability and Overrides Cell-Cycle Checkpoints to Drive Tumorigenesis
Authors: Gheghiani Lilia , Wang Lei , Zhang Youwei , Moore Xavier T.R. , Zhang Jinglei , Smith Steven C. , Tian Yijun , Wang Liang , Turner Kristi , Jackson-Cook Colleen K. , Mukhopadhyay Nitai D. , Fu Zheng
Published: April 2023

supplemental figures and methods
Supplemental figure from PKCϵ Is Required for KRAS-Driven Lung Tumorigenesis
Authors: Garg Rachana , Cooke Mariana , Benavides Fernando , Abba Martín C. , Cicchini Michelle , Feldser David M. , Kazanietz Marcelo G.
Published: April 2023

Figure S1. Generation of PKCe knockout mice in A/J background.
Supplementary Methods from Transcriptional Repression of SIRT3 Potentiates Mitochondrial Aconitase Activation to Drive Aggressive Prostate Cancer to the Bone
Authors: Sawant Dessai Abhisha , Dominguez Mayrel Palestino , Chen Uan-I , Hasper John , Prechtl Christian , Yu Cuijuan , Katsuta Eriko , Dai Tao , Zhu Bokai , Jung Sung Yun , Putluri Nagireddy , Takabe Kazuaki , Zhang Xiang H.-F. , O'Malley Bert W. , Dasgupta Subhamoy
Published: April 2023

Supplementary Methods
Supplementary Table S4 from Activated ALK Cooperates with N-Myc via Wnt/β-Catenin Signaling to Induce Neuroendocrine Prostate Cancer
Authors: Unno Kenji , Chalmers Zachary R. , Pamarthy Sahithi , Vatapalli Rajita , Rodriguez Yara , Lysy Barbara , Mok Hanlin , Sagar Vinay , Han Huiying , Yoo Young A. , Ku Sheng-Yu , Beltran Himisha , Zhao Yue , Abdulkadir Sarki A.
Published: April 2023

Supplementary Table S4. Analysis of ALK and potential ALK-ligand mRNA expression in primary prostate cancer dataset.
Supplementary Data from Single-Cell Analyses Reveal Diverse Mechanisms of Resistance to EGFR Tyrosine Kinase Inhibitors in Lung Cancer
Authors: Kashima Yukie , Shibahara Daisuke , Suzuki Ayako , Muto Kyoko , Kobayashi Ikei S. , Plotnick David , Udagawa Hibiki , Izumi Hiroki , Shibata Yuji , Tanaka Kosuke , Fujii Masanori , Ohashi Akihiro , Seki Masahide , Goto Koichi , Tsuchihara Katsuya , Suzuki Yutaka , Kobayashi Susumu S.
Published: April 2023

Supplemental Legends
Supplementary Table S2 from Activated ALK Cooperates with N-Myc via Wnt/β-Catenin Signaling to Induce Neuroendocrine Prostate Cancer
Authors: Unno Kenji , Chalmers Zachary R. , Pamarthy Sahithi , Vatapalli Rajita , Rodriguez Yara , Lysy Barbara , Mok Hanlin , Sagar Vinay , Han Huiying , Yoo Young A. , Ku Sheng-Yu , Beltran Himisha , Zhao Yue , Abdulkadir Sarki A.
Published: April 2023

Supplementary Table S2. ALK mutations identified in prostate cancer datasets at cBioportal.
Supplementary Data Table S1 and S2 from Single-Cell Analyses Reveal Diverse Mechanisms of Resistance to EGFR Tyrosine Kinase Inhibitors in Lung Cancer
Authors: Kashima Yukie , Shibahara Daisuke , Suzuki Ayako , Muto Kyoko , Kobayashi Ikei S. , Plotnick David , Udagawa Hibiki , Izumi Hiroki , Shibata Yuji , Tanaka Kosuke , Fujii Masanori , Ohashi Akihiro , Seki Masahide , Goto Koichi , Tsuchihara Katsuya , Suzuki Yutaka , Kobayashi Susumu S.
Published: April 2023

Supplementary Table S1 and S2
Supplementary Table S1 from Activated ALK Cooperates with N-Myc via Wnt/β-Catenin Signaling to Induce Neuroendocrine Prostate Cancer
Authors: Unno Kenji , Chalmers Zachary R. , Pamarthy Sahithi , Vatapalli Rajita , Rodriguez Yara , Lysy Barbara , Mok Hanlin , Sagar Vinay , Han Huiying , Yoo Young A. , Ku Sheng-Yu , Beltran Himisha , Zhao Yue , Abdulkadir Sarki A.
Published: April 2023

Supplementary Table S1. Analysis of prostate cancer datasets at cBioportal database for percent genomic alterations and co-occurrence trend in ALK MYCN and AURKA genes.
Supplementary Information from Activated ALK Cooperates with N-Myc via Wnt/β-Catenin Signaling to Induce Neuroendocrine Prostate Cancer
Authors: Unno Kenji , Chalmers Zachary R. , Pamarthy Sahithi , Vatapalli Rajita , Rodriguez Yara , Lysy Barbara , Mok Hanlin , Sagar Vinay , Han Huiying , Yoo Young A. , Ku Sheng-Yu , Beltran Himisha , Zhao Yue , Abdulkadir Sarki A.
Published: April 2023

Supplementary Information
Supplementary Data from The miR–181a–SFRP4 Axis Regulates Wnt Activation to Drive Stemness and Platinum Resistance in Ovarian Cancer
Authors: Belur Nagaraj Anil , Knarr Matthew , Sekhar Sreeja , Connor R. Shae , Joseph Peronne , Kovalenko Olga , Fleming Alexis , Surti Arshia , Nurmemmedov Elmar , Beltrame Luca , Marchini Sergio , Kahn Michael , DiFeo Analisa
Published: April 2023

Supplemental Table 1: Table of all antibodies used in studies including the company, catalog numbers and dilutions used to perform western blots.
Supplementary Figure S3 from Nedd9 Restrains Autophagy to Limit Growth of Early Stage Non–Small Cell Lung Cancer
Authors: Deneka Alexander Y. , Kopp Meghan C. , Nikonova Anna S. , Gaponova Anna V. , Kiseleva Anna A. , Hensley Harvey H. , Flieder Douglas B. , Serebriiskii Ilya G. , Golemis Erica A.
Published: April 2023

Inhibition of FAK, SRC, or CAMKK in NSCLC cell lines
Table S2 from Tumor-Derived Pericytes Driven by EGFR Mutations Govern the Vascular and Immune Microenvironment of Gliomas
Authors: Segura-Collar Berta , Garranzo-Asensio María , Herranz Beatriz , Hernández-SanMiguel Esther , Cejalvo Teresa , Casas Bárbara S. , Matheu Ander , Pérez-Núñez Ángel , Sepúlveda-Sánchez Juan Manuel , Hernández-Laín Aurelio , Palma Verónica , Gargini Ricardo , Sánchez-Gómez Pilar
Published: April 2023

List of glioma samples
Figure S2 from Tumor-Derived Pericytes Driven by EGFR Mutations Govern the Vascular and Immune Microenvironment of Gliomas
Authors: Segura-Collar Berta , Garranzo-Asensio María , Herranz Beatriz , Hernández-SanMiguel Esther , Cejalvo Teresa , Casas Bárbara S. , Matheu Ander , Pérez-Núñez Ángel , Sepúlveda-Sánchez Juan Manuel , Hernández-Laín Aurelio , Palma Verónica , Gargini Ricardo , Sánchez-Gómez Pilar
Published: April 2023

Analysis of EGFR-IDH alterations and vascular molecules in human samples
Supplementary Data from Contacts with Macrophages Promote an Aggressive Nanomechanical Phenotype of Circulating Tumor Cells in Prostate Cancer
Authors: Osmulski Pawel A. , Cunsolo Alessandra , Chen Meizhen , Qian Yusheng , Lin Chun-Lin , Hung Chia-Nung , Mahalingam Devalingam , Kirma Nameer B. , Chen Chun-Liang , Taverna Josephine A. , Liss Michael A. , Thompson Ian M. , Huang Tim H.-M. , Gaczynska Maria E.
Published: April 2023

Supplementary Materials and Methods, Figures and Tables
Supplementary Table 3 from Nicotine-Induced ILF2 Facilitates Nuclear mRNA Export of Pluripotency Factors to Promote Stemness and Chemoresistance in Human Esophageal Cancer
Authors: Li Yue , Wang Meng , Yang Muwen , Xiao Yunyun , Jian Yunting , Shi Dongni , Chen Xiangfu , Ouyang Ying , Kong Lingzhi , Huang Xinjian , Bai Jiewen , Hu Yameng , Lin Chuyong , Song Libing
Published: April 2023

MS identification of ILF2 interacting proteins.
Supplementary Materials, Methods, and References from SNAI2-Mediated Repression of BIM Protects Rhabdomyosarcoma from Ionizing Radiation
Authors: Wang Long , Hensch Nicole R. , Bondra Kathryn , Sreenivas Prethish , Zhao Xiang R. , Chen Jiangfei , Moreno Campos Rodrigo , Baxi Kunal , Vaseva Angelina V. , Sunkel Benjamin D. , Gryder Berkley E. , Pomella Silvia , Stanton Benjamin Z. , Zheng Siyuan , Chen Eleanor Y. , Rota Rossella , Khan Javed , Houghton Peter J. , Ignatius Myron S.
Published: April 2023

Materials and Methods used for experiments in Supplemental Figures and Supplemental References
Table S1 from A Transcriptionally Distinct Subpopulation of Healthy Acinar Cells Exhibit Features of Pancreatic Progenitors and PDAC
Authors: Gopalan Vishaka , Singh Arashdeep , Rashidi Mehrabadi Farid , Wang Li , Ruppin Eytan , Arda H. Efsun , Hannenhalli Sridhar
Published: April 2023

Enrichment of Hallmark oncogenic pathways in the non-edge acinar to edge acinar transition.
Supplementary Table S9 from The Proteomic Landscape of Growth Factor Signaling Networks Associated with FAT1 Mutations in Head and Neck Cancers
Authors: Chen Zhengjia , Zhang Chao , Chen Jianhong , Wang Dongsheng , Tu Jieqi , Van Waes Carter , Saba Nabil F. , Chen Zhuo G. , Chen Zhong
Published: April 2023

Supplementary Table S9
Supplementary Table S4 from Data-Driven Computational Modeling Identifies Determinants of Glioblastoma Response to SHP2 Inhibition
Authors: Day Evan K. , Zhong Qing , Purow Benjamin , Lazzara Matthew J.
Published: April 2023

Supplementary Table S4
Supplementary Table S2 from Data-Driven Computational Modeling Identifies Determinants of Glioblastoma Response to SHP2 Inhibition
Authors: Day Evan K. , Zhong Qing , Purow Benjamin , Lazzara Matthew J.
Published: April 2023

Supplementary Table S2
Supplementary Data from Data-Driven Computational Modeling Identifies Determinants of Glioblastoma Response to SHP2 Inhibition
Authors: Day Evan K. , Zhong Qing , Purow Benjamin , Lazzara Matthew J.
Published: April 2023

Supplementary Data
Supplementary Figure S7 from E2A Modulates Stemness, Metastasis, and Therapeutic Resistance of Breast Cancer
Authors: López-Menéndez Celia , Vázquez-Naharro Alberto , Santos Vanesa , Dubus Pierre , Santamaría Patricia G. , Martínez-Ramírez Ángel , Portillo Francisco , Moreno-Bueno Gema , Faraldo Marisa M. , Cano Amparo
Published: April 2023

Figure S7 and legend