bluuebunny/crossref_metadata_2025 huggingface dataset:
Increasing Readiness to Grow Traffic Safety Culture and Adopt the Safe System Approach: A Story of the Washington Traffic Safety Commission
Authors: Otto Jay , Ward Nic , Finley Kari , Baldwin Shelly T. , Alonzo Wade
Published: July 2022

Growing traffic safety culture and adopting the Safe System approach are strategies to support achieving a vision of zero traffic fatalities and serious injuries. However, adopting these strategies requires organizational change. Change is more likely to occur and be sustained by growing organizational readiness for change. Change readiness is driven by perceptions that 1) the change aligns with the organization’s culture 2) the organization (e.g., leadership, staff), is committed to the change, and 3) the organization has the resources necessary to make the change. The Washington Traffic Safety Commission has been engaged in a change process that focuses on growing traffic safety culture and adopting the Safe System approach for many years. This article shares insights from their journey that other organizations can use to bolster their own change efforts.
Imputation of Ancient Whole Genome Sus scrofa DNA Introduces Biases Toward Main Population Components in the Reference Panel
Authors: Erven J. A. M. , Çakirlar C. , Bradley D. G. , Raemaekers D. C. M. , Madsen O.
Published: July 2022

Sequencing ancient DNA to high coverage is often limited by sample quality and cost. Imputing missing genotypes can potentially increase information content and quality of ancient data, but requires different computational approaches than modern DNA imputation. Ancient imputation beyond humans has not been investigated. In this study we report results of a systematic evaluation of imputation of three whole genome ancient Sus scrofa samples from the Early and Late Neolithic (∼7,100–4,500 BP), to test the utility of imputation. We show how issues like genetic architecture and, reference panel divergence, composition and size affect imputation accuracy. We evaluate a variety of imputation methods, including Beagle5, GLIMPSE, and Impute5 with varying filters, pipelines, and variant calling methods. We achieved genotype concordance in most cases reaching above 90%; with the highest being 98% with ∼2,000,000 variants recovered using GLIMPSE. Despite this high concordance the sources of diversity present in the genotypes called in the original high coverage genomes were not equally imputed leading to biases in downstream analyses; a trend toward genotypes most common in the reference panel is observed. This demonstrates that the current reference panel does not possess the full diversity needed for accurate imputation of ancient Sus, due to missing variations from Near Eastern and Mesolithic wild boar. Imputation of ancient Sus scrofa holds potential but should be approached with caution due to these biases, and suggests that there is no universal approach for imputation of non-human ancient species.
Pan-Cancer Analysis Identified Homologous Recombination Factor With OB-Fold (HROB) as a Potential Biomarker for Various Tumor Types
Authors: Liu Xianming , Wang Cunchuan
Published: July 2022

Background: By recruiting the MCM8–MCM9 helicase to DNA damage site, the Homologous Recombination Factor With OB-Fold (HROB) is involved in the repair of inter-strand crosslink and homologous recombination. Previous studies have shown that HROB may play an oncogenic role by promoting cell proliferation and chemoresistance in several tumor types. However, the potential diagnostic and prognostic values of HROB have not been systemically explored in pan-cancer.

Methods: We analyzed the expression pattern of HROB among tumor tissues and normal tissues in several public databases, including Human Protein Atlas and the Cancer Genome Atlas (TCGA) and investigated the association between the HROB expression and pathological stage and patient prognosis. We also analyzed the association between HROB expression and cancer stemness and immune infiltration of cancer-associated fibroblasts (CAFs) and CD8+ T cells in pan-cancer. Finally, we explored the potential biological function of HROB through pathway enrichment analysis.

Results: In most tumor types, HROB is overexpressed in tumor tissues compared with non-tumor tissues. High HROB expression was correlated with poor prognosis and advanced pathological stages. HROB expression was robustly correlated with cancer stemness. Moreover, significant correlations between CAFs, CD8+ T-cell infiltration, and HROB expression were observed in several tumor types. Pathway enrichment analysis revealed that cell cycle and mitotic-regulated pathways were strongly enriched in HROB co-expressed genes.

Conclusion: HROB may be a potential diagnostic and prognostic biomarker in pan-cancer, which may play a role in tumorigenesis and disease progression by affecting the cancer stemness of tumor tissues and immune cell infiltration.
Intelligent Nanoparticles With pH-Sensitive Co-Delivery of Temozolomide and siEGFR to Ameliorate Glioma Therapy
Authors: Wang Zhen , Liu Yuyang , Xiao Yong , Xie Yandong , Wang Ran , Zhang Yiding , Zhou Qi , Liu Liang , Sun Shuo , Xiao Hong , Zou Yuanjie , Yang Kun , Li Xiang , Zhao Mengjie , Hu Yifang , Liu Hongyi
Published: July 2022

Glioblastoma (GBM) is one of the most lethal forms of human cancer, with very few long-term survivors. In addition to surgery, chemotherapy is still an important strategy. Unfortunately, GBM chemotherapy faces two main challenges: first, in GBM, epidermal growth factor receptor (EGFR) overexpression results in chemoresistance; second, temozolomide (TMZ) lacks target specificity, which can lead to a reduction in the concentration and side effects in GBM. Nowadays, with the development of nanomedicine systems for applications in tumor therapies, increasing anticancer efficacy and reducing side effects with multi-drug delivery are huge advantages. In this study, pH-sensitive and GBM-targeting nanovesicle (Tf-PEG-PAE(SS)) was fabricated. The chemotherapy drug (TMZ) and EGFR inhibitor (EGFR-siRNA) were co-encapsulated in the nanocarrier, and their anticancer outcomes were investigated in detail. In vitro experiments have shown that the nanocarrier transports TMZ and EGFR-siRNA efficiently into U87 cells, causing a vigorous apoptotic response by silencing the proliferative EGFR gene and increasing the drug concentration of TMZ simultaneously. An experimental study in mice bearing orthotropic glioma revealed that the accumulated nanocarriers in the tumor site could inhibit the tumor growth and prolong the mice survival remarkably through the intracranial injection of Tf-PEG-PAE(SS)/TMZ@siEGFR. The drug co-delivery system could extend the blood circulation time and offer a new strategy to treat glioblastoma.
Effects of Different Monochromatic Light Combinations on Cecal Microbiota Composition and Cecal Tonsil T Lymphocyte Proliferation
Authors: Zhang Yijia , Wang Zixu , Dong Yulan , Cao Jing , Chen Yaoxing
Published: July 2022

Emerging data demonstrated that the gut microbiota plays an important role in protecting the integrity of the epithelial barrier, forming a mucosal immune system, and maintaining intestinal homeostasis through its metabolites. However, the intestinal microbiota community can be affected by environmental factors, such as litter, photoperiod, or temperature. Thus, we investigated the effect of different monochromatic light combinations on cecal microbiota composition as well as explored the molecular mechanism by how the external light color information mediate cecal tonsil T lymphocyte proliferation. In this study, a total of 160 chicks were exposed to monochromatic light [red (R), green (G), blue (B), or white (W) light] or green and blue monochromatic light combination (G→B) from P0 to P42. The 16S rRNA microbial sequencing results showed that the richness and diversity of the cecum microbiota and the abundance of Faecalibacterium and Butyricicoccus were significantly increased in the G→B. With consistency in the upregulation of antioxidant enzyme ability and downregulation of pro-inflammation levels in the cecum, we observed an increase in the number of goblet cells, secretory IgA+ cells, tight junction protein (occludin, ZO-1, and claudin-1) and MUC-2 expression in the cecum of the G→B. The metabolomics analysis revealed that the relative abundance of metabolites related to butyrate was significantly increased in G→B. In an in vitro experiment, we found that butyrate could effectively induce T lymphocyte proliferation and cyclin D1 protein expression. However, these butyrate responses were abrogated by HDAC3 agonists, STAT3 antagonists, or mTOR antagonists but were mimicked by GPR43 agonists or HDAC3 antagonists. Thus, we suggested that G→B can indirectly affect the composition of cecal microbiota as well as increase the relative abundance of Faecalibacterium and Butyricicoccus and butyrate production by reducing the level of oxidative stress in the cecum. Exogenous butyrate could promote the T lymphocyte proliferation of cecal tonsil by activating the GPR43/HDAC3/p-STAT3/mTOR pathways.
Best Treatment Option for Patients With Refractory Aggressive B-Cell Lymphoma in the CAR-T Cell Era: Real-World Evidence From GELTAMO/GETH Spanish Groups
Authors: Bastos-Oreiro Mariana , Gutierrez Antonio , Reguera Juan Luís , Iacoboni Gloria , López-Corral Lucía , Terol María José , Ortíz-Maldonado Valentín , Sanz Jaime , Guerra-Dominguez Luisa , Bailen Rebeca , Mussetti Alberto , Abrisqueta Pau , Hernani Rafael , Luzardo Hugo , Sancho Juan-Manuel , Delgado-Serrano Javier , Salar Antonio , Grande Carlos , Bento Leyre , González de Villambrosía Sonia , García-Belmonte Daniel , Sureda Anna , Pérez-Martínez Antonio , Barba Pere , Kwon Mi , Martín García-Sancho Alejandro
Published: July 2022

Real-world evidence comparing the efficacy of chimeric antigen receptor (CAR) T-cell therapy against that of the previous standard of care (SOC) for refractory large B-cell lymphoma (LBCL) is scarce. We retrospectively collected data from patients with LBCL according to SCHOLAR-1 criteria treated with commercial CAR T-cell therapy in Spain (204 patients included and 192 treated, 101 with axicabtagene ciloleucel [axi-cel], and 91 with tisagenlecleucel [tisa-cel]) and compared the results with a historical refractory population of patients (n = 81) obtained from the GELTAMO-IPI study. We observed superior efficacy for CAR-T therapy (for both axi-cel and tisa-cel) over pSOC, with longer progression-free survival (PFS) (median of 5.6 vs. 4–6 months, p ≤ 0.001) and overall survival (OS) (median of 15 vs. 8 months, p < 0.001), independently of other prognostic factors (HR: 0.59 (95% CI: 0.44–0.80); p < 0.001] for PFS, and 0.45 [(95% CI: 0.31–0.64)] for OS). Within the CAR-T cohort, axi-cel showed longer PFS (median of 7.3 versus 2.8 months, respectively, p = 0.027) and OS (58% versus 42% at 12 months, respectively, p = 0.048) than tisa-cel. These differences were maintained in the multivariable analysis. On the other hand, axi-cel was independently associated with a higher risk of severe cytokine release syndrome and neurotoxicity. Our results suggest that the efficacy of CAR-T cell therapy is superior to pSOC in the real-world setting. Furthermore, axi-cel could be superior in efficacy to tisa-cel, although more toxic, in this group of refractory patients according to SCHOLAR-1 criteria.
Enlarged Pericarotid Lymph Nodes Suggest Recent Ischemic Symptoms in Patients with Carotid Atherosclerosis
Authors: Sun Tao , Wang Fei , He Yiming , Mao Bo , Han Mengtao , Liu Han , Zhao Peng , Li Xingang , Wang Donghai
Published: July 2022

Atherosclerosis is a chronic inflammatory disease closely associated with immunological activity. Lymph nodes (LNs) are essential secondary lymphoid organs, in which complex immune responses occur. Enlarged LNs are commonly observed around inflamed tissues or tumors; however, their role in atherosclerosis is not well understood. We hypothesized that enlarged pericarotid LNs would be present in symptomatic patients with carotid atherosclerosis. Therefore, we recorded the size of LNs around the carotid artery during surgery in patients undergoing carotid endarterectomy (CEA) for carotid atherosclerotic stenosis. Patients were stratified by enlarged LNs, defined as a diameter ≥ 10mm in the transverse diameters. Demographic and clinical data of participants were measured and analyzed. Hematoxylin and eosin (H&E), Sirius red, DAB-enhanced Perls’ Prussian blue, alizarin red, and immunohistochemistry (IHC) staining were performed for composition identification of plaques or LNs. Symptomatic patients were defined as those presenting with an ipsilateral cerebral ischemic event. Compared with patients with non-enlarged LNs, patients with enlarged LNs were more likely to be symptomatic (22/32, 68.8% versus 9/40, 22.5%, P < 0.001) and use calcium channel blocker drugs (17/32, 53.1% versus 10/40, 25%, P=0.014). In addition, they showed lower body mass index (mean ± SD: 24.00 ± 2.66 versus 25.34 ± 2.56 kg/m2, P=0.034), lower weight (median [interquartile range]: 64 [60.00-76.00] versus 72.5 [65.00-77.50] Kg, P = 0.046) and higher diastolic blood pressure (mean ± SD: 78.94 ± 9.30 versus 73.93 ± 8.84 mmHg, P = 0.022). The plague from patients with enlarged LNs exhibited a lower relative percentage of fibrous tissue (29.49 ± 10.73% versus 34.62 ± 10.33%, P = 0.041). The enlarged LNs remained oval-shaped by visual inspection. Compared to non-enlarged LNs, the predominant changes in enlarged LNs were atrophic lymphatic sinuses and dilated LNs parenchyma. Enlarged LNs contained more germinal centers and lymphocytes. In conclusion, symptomatic patients with carotid atherosclerosis have enlarged pericarotid LNs. The current study supports the conclusion that enlarged LNs with an activated and enhanced adaptive immune response may indicate plaque instability. Pericarotid LNs will be a promising marker of plaque stability and may be a potential therapeutic target in patients with carotid atherosclerosis.
Oregano Essential Oils Mediated Intestinal Microbiota and Metabolites and Improved Growth Performance and Intestinal Barrier Function in Sheep
Authors: Jia Li , Wu Jianping , Lei Yu , Kong Fanyun , Zhang Rui , Sun Jianxiang , Wang Liao , Li Zemin , Shi Jinping , Wang Ying , Wei Yubing , Zhang Ke , Lei Zhaomin
Published: July 2022

With the increased demand for safe and sustainable alternatives to growth promoting antibiotics in the livestock industry, oregano essential oils (OEO) and Lactobacillus reuteri (LR) have been examined as alternatives to antibiotics for growth promotion and to improve animal health and performance. However, the mechanism underlying the OEO and LR mediation of sheep growth remains unknown. In this study, 16S rRNA gene sequencing and untargeted metabolomics were used to determine the role of the gut microbiota in the growth improvements observed. The potential modulating roles of intestinal microbial metabolites of OEO and LR to intestinal health were systematically explored as well. It was observed that both OEO and LR had greater average daily gain (ADG) and lower F/G ratio. Furthermore, OEO also appeared to have produced a greater amylase enzyme activity and mucin gene expression in the jejunal mucosa. It was also observed that OEO reduced serum IL-2 and TNF-β as well as mRNA levels of NF-κB p65, toll-like receptor-4 (TLR-4), and IL-6 in the jejunal mucosa. Moreover, dietary OEO supplementation increased the abundances of Ruminococcus, Bifidobacterium and Enterococcus, while the relative abundances of Succiniclasticum, Marvinbryantia and Streptococcus were enriched in LR group. Spearman’s correlation analysis revealed that the abundances of Bifidobacterium, Ruminococcus and Enterococcus were positively correlated with the mRNA expression of mucins. Moreover, the relative abundance of Enterococcus was positively correlated with amylase activity. Metabolomics analysis indicated that OEO and LR increased the levels of indole acetaldehyde and indole-3-acetic acid through the tryptophan metabolism pathway. It was observed that LR also decreased the inflammatory metabolites including tryptamine and 5-hydroxyindole-3-acetic acid. Collectively, these results suggested that OEO exerted a beneficial effect on growth performance and the mucosal barrier, affected tryptophan metabolism and improved the intestinal microbiota of sheep.
Lymphocytic Airway Inflammation in Lung Allografts
Authors: Santos Jesse , Calabrese Daniel R. , Greenland John R.
Published: July 2022

Lung transplant remains a key therapeutic option for patients with end stage lung disease but short- and long-term survival lag other solid organ transplants. Early ischemia-reperfusion injury in the form of primary graft dysfunction (PGD) and acute cellular rejection are risk factors for chronic lung allograft dysfunction (CLAD), a syndrome of airway and parenchymal fibrosis that is the major barrier to long term survival. An increasing body of research suggests lymphocytic airway inflammation plays a significant role in these important clinical syndromes. Cytotoxic T cells are observed in airway rejection, and transcriptional analysis of airways reveal common cytotoxic gene patterns across solid organ transplant rejection. Natural killer (NK) cells have also been implicated in the early allograft damage response to PGD, acute rejection, cytomegalovirus, and CLAD. This review will examine the roles of lymphocytic airway inflammation across the lifespan of the allograft, including: 1) The contribution of innate lymphocytes to PGD and the impact of PGD on the adaptive immune response. 2) Acute cellular rejection pathologies and the limitations in identifying airway inflammation by transbronchial biopsy. 3) Potentiators of airway inflammation and heterologous immunity, such as respiratory infections, aspiration, and the airway microbiome. 4) Airway contributions to CLAD pathogenesis, including epithelial to mesenchymal transition (EMT), club cell loss, and the evolution from constrictive bronchiolitis to parenchymal fibrosis. 5) Protective mechanisms of fibrosis involving regulatory T cells. In summary, this review will examine our current understanding of the complex interplay between the transplanted airway epithelium, lymphocytic airway infiltration, and rejection pathologies.
IL-36 Cytokines: Their Roles in Asthma and Potential as a Therapeutic
Authors: Dong Hongna , Hao Yuqiu , Li Wei , Yang Wei , Gao Peng
Published: July 2022

Interleukin (IL)-36 cytokines are members of the IL-1 superfamily, which consists of three agonists (IL-36α, IL-36β and IL-36γ) and an IL-36 receptor antagonist (IL-36Ra). IL-36 cytokines are crucial for immune and inflammatory responses. Abnormal levels of IL-36 cytokine expression are involved in the pathogenesis of inflammation, autoimmunity, allergy and cancer. The present study provides a summary of recent reports on IL-36 cytokines that participate in the pathogenesis of inflammatory diseases, and the potential mechanisms underlying their roles in asthma. Abnormal levels of IL-36 cytokines are associated with the pathogenesis of different types of asthma through the regulation of the functions of different types of cells. Considering the important role of IL-36 cytokines in asthma, these may become a potential therapeutic target for asthma treatment. However, existing evidence is insufficient to fully elucidate the specific mechanism underlying the action of IL-36 cytokines during the pathological process of asthma. The possible mechanisms and functions of IL-36 cytokines in different types of asthma require further studies.
Hydrophilic But Not Hydrophobic Surfactant Protein Genetic Variants Are Associated With Severe Acute Respiratory Syncytial Virus Infection in Children
Authors: Depicolzuane Lynnlee C. , Roberts Catherine M. , Thomas Neal J. , Anderson-Fears Keenan , Liu Dajiang , Barbosa João Paulo Pereira , Souza Felipe Rodrigues , Pimentel André Silva , Floros Joanna , Gandhi Chintan K.
Published: July 2022

Respiratory syncytial virus (RSV) is the leading cause of lower respiratory tract infection-related hospitalization in the first year of life. Surfactant dysfunction is central to pathophysiologic mechanisms of various pulmonary diseases including RSV. We hypothesized that RSV severity is associated with single nucleotide polymorphisms (SNPs) of surfactant proteins (SPs). We prospectively enrolled 405 RSV-positive children and divided them into moderate and severe RSV disease. DNA was extracted and genotyped for sixteen specific SP gene SNPs. SP-A1 and A2 haplotypes were assigned. The association of RSV severity with SP gene SNPs was investigated by multivariate logistic regression. A likelihood ratio test was used to test the goodness of fit between two models (one with clinical and demographic data alone and another that included genetic variants). p ≤ 0.05 denotes statistical significance. A molecular dynamics simulation was done to determine the impact of the SFTPA2 rs1965708 on the SP-A behavior under various conditions. Infants with severe disease were more likely to be younger, of lower weight, and exposed to household pets and smoking, as well as having co-infection on admission. A decreased risk of severe RSV was associated with the rs17886395_C of the SFTPA2 and rs2243639_A of the SFTPD, whereas an increased risk was associated with the rs1059047_C of the SFTPA1. RSV severity was not associated with SNPs of SFTPB and SFTPC. An increased risk of severe RSV was associated with the 1A0 genotype of SFTPA2 in its homozygous or heterozygous form with 1A3. A molecular dynamic simulation study of SP-A variants that differ in amino acid 223, an important amino acid change (Q223K) between 1A0 and 1A3, showed no major impact on the behavior of these two variants except for higher thermodynamic stability of the K223 variant. The likelihood ratio test showed that the model with multi-allelic variants along with clinical and demographic data was a better fit to predict RSV severity. In summary, RSV severity was associated with hydrophilic (but not with hydrophobic) SPs gene variants. Collectively, our findings show that SP gene variants may play a key role in RSV infection and have a potential role in prognostication.
Sphingomyelin Depletion Inhibits CXCR4 Dynamics and CXCL12-Mediated Directed Cell Migration in Human T Cells
Authors: Gardeta Sofía R. , García-Cuesta Eva M. , D’Agostino Gianluca , Soler Palacios Blanca , Quijada-Freire Adriana , Lucas Pilar , Bernardino de la Serna Jorge , Gonzalez-Riano Carolina , Barbas Coral , Rodríguez-Frade José Miguel , Mellado Mario
Published: July 2022

Sphingolipids, ceramides and cholesterol are integral components of cellular membranes, and they also play important roles in signal transduction by regulating the dynamics of membrane receptors through their effects on membrane fluidity. Here, we combined biochemical and functional assays with single-particle tracking analysis of diffusion in the plasma membrane to demonstrate that the local lipid environment regulates CXCR4 organization and function and modulates chemokine-triggered directed cell migration. Prolonged treatment of T cells with bacterial sphingomyelinase promoted the complete and sustained breakdown of sphingomyelins and the accumulation of the corresponding ceramides, which altered both membrane fluidity and CXCR4 nanoclustering and dynamics. Under these conditions CXCR4 retained some CXCL12-mediated signaling activity but failed to promote efficient directed cell migration. Our data underscore a critical role for the local lipid composition at the cell membrane in regulating the lateral mobility of chemokine receptors, and their ability to dynamically increase receptor density at the leading edge to promote efficient cell migration.
Proteomic and Metabolomic Characterization of SARS-CoV-2-Infected Cynomolgus Macaque at Early Stage
Authors: Wang Tiecheng , Miao Faming , Lv Shengnan , Li Liang , Wei Feng , Hou Lihua , Sun Renren , Li Wei , Zhang Jian , Zhang Cheng , Yang Guang , Xiang Haiyang , Meng Keyin , Wan Zhonghai , Wang Busen , Feng Guodong , Zhao Zhongpeng , Luo Deyan , Li Nan , Tu Changchun , Wang Hui , Xue Xiaochang , Liu Yan , Gao Yuwei
Published: July 2022

Although tremendous effort has been exerted to elucidate the pathogenesis of severe COVID-19 cases, the detailed mechanism of moderate cases, which accounts for 90% of all patients, remains unclear yet, partly limited by lacking the biopsy tissues. Here, we established the COVID-19 infection model in cynomolgus macaques (CMs), monitored the clinical and pathological features, and analyzed underlying pathogenic mechanisms at early infection stage by performing proteomic and metabolomic profiling of lung tissues and sera samples from COVID-19 CMs models. Our data demonstrated that innate immune response, neutrophile and platelet activation were mainly dysregulated in COVID-19 CMs. The symptom of neutrophilia, lymphopenia and massive “cytokines storm”, main features of severe COVID-19 patients, were greatly weakened in most of the challenged CMs, which are more semblable as moderate patients. Thus, COVID-19 model in CMs is rational to understand the pathogenesis of moderate COVID-19 and may be a candidate model to assess the safety and efficacy of therapeutics and vaccines against SARS-CoV-2 infection.
doublesex Controls Both Hindwing and Abdominal Mimicry Traits in the Female-Limited Batesian Mimicry of Papilio memnon
Authors: Komata Shinya , Lin Chung-Ping , Fujiwara Haruhiko
Published: July 2022

Papilio butterflies are known to possess female-limited Batesian mimicry polymorphisms. In Papilio memnon, females have mimetic and non-mimetic forms, whereas males are monomorphic and non-mimetic. Mimetic females are characterized by color patterns and tails in the hindwing and yellow abdomens. Recently, an analysis of whole-genome sequences has shown that an approximately 160 kb region of chromosome 25 is responsible for mimicry and has high diversity between mimetic (A) and non-mimetic (a) alleles (highly diversified region: HDR). The HDR includes three genes, UXT, doublesex (dsx), and Nach-like, but the functions of these genes are unknown. Here, we investigated the function of dsx, a gene involved in sexual differentiation, which is expected to be functionally important for hindwing and abdominal mimetic traits in P. memnon. Expression analysis by reverse transcription quantitative PCR (RT-qPCR) and RNA sequencing showed that mimetic dsx (dsx-A) was highly expressed in the hindwings in the early pupal stage. In the abdomen, both dsx-A and dsx-a were highly expressed during the early pupal stage. When dsx was knocked down using small interfering RNAs (siRNAs) designed in the common region of dsx-A and dsx-a, a male-like pattern appeared on the hindwings of mimetic and non-mimetic females. Similarly, when dsx was knocked down in the abdomen, the yellow scales characteristic of mimetic females changed to black. Furthermore, when dsx-a was specifically knocked down, the color pattern of the hindwings changed, as in the case of dsx knockdown in non-mimetic females but not mimetic females. These results suggest that dsx-a is involved in color pattern formation on the hindwings of non-mimetic females, whereas dsx-A is involved in hindwing and abdominal mimetic traits. dsx was involved in abdominal and hindwing mimetic traits, but dsx expression patterns in the hindwing and abdomen were different, suggesting that different regulatory mechanisms may exist. Our study is the first to show that the same gene (dsx) regulates both the hindwing and abdominal mimetic traits. This is the first functional analysis of abdominal mimicry in butterflies.
Multiple Trophic Tracer Analyses of Subarctic Rhodolith (Lithothamnion glaciale) Bed Trophodynamics Uncover Bottom-Up Forcing and Benthic-Pelagic Coupling
Authors: Hacker Teper Sean , Parrish Christopher C. , Gagnon Patrick
Published: July 2022

We paired a survey of cryptofaunal abundance and rhodolith morphology with lipid, fatty acid, and stable isotope analyses to quantify nutritional patterns and trophic linkages of six dominant echinoderm, bivalve, gastropod, and polychaete species, two macroalgal species, seawater, and underlying sediment in a large (>500 m2) rhodolith (Lithothamnion glaciale) bed in southeastern Newfoundland (Canada). We found high densities of chitons (Tonicella marmoreaandT. rubra) and daisy brittle star (Ophiopholis aculeata), and overall species composition, rhodolith morphology (shape and size), and total rhodolith biomass were consistent with other studies of the bed, indicating high temporal stability. Our lipid and fatty acid analyses revealed high levels of phospholipids and unsaturated fatty acids combined with low sterols in all animal species, suggesting adaptation for enhanced cell membrane fluidity in a cold-water environment. They also showed that most taxa sampled feed on a shared resource; diatoms, and that (non-kelp) macroalgal detritus are a key food source within rhodolith communities. Our stable isotope analysis uncovered three distinct trophic levels; producers, suspension/filter feeders and grazers, and predators, and unveiled potential resource partitioning between first- (H. arctica) and second- (O. aculeataandTonicellaspp.) order consumers, whereby differences in feeding strategies enable utilization of specific components of the same organic and inorganic material. The unprecedented analytical resolution enabled by the combined use of three trophic tracers indicate that bottom-up forcing (as a mechanism of trophic control) and benthic-pelagic coupling (as a pathway of nutrient and energy flow) operate simultaneously, at least seasonally, in subarctic rhodolith beds.
Free Pass Through the Pillars of Hercules? Genetic and Historical Insights Into the Recent Expansion of the Atlantic Blue Crab Callinectes sapidus to the West and the East of the Strait of Gibraltar
Authors: González-Ortegón Enrique , Berger Selina , Encarnação João , Chairi Hicham , Morais Pedro , Teodósio Maria Alexandra , Oliva-Paterna Francisco J. , Schubart Christoph D. , Cuesta Jose A.
Published: July 2022

The invasive Atlantic blue crab Callinectes sapidus has considerably extended its distribution along the Gulf of Cadiz and Moroccan coasts in the northeast Atlantic. This could indicate a new introduction event in the Gulf of Cadiz from the native area, in case of detectable genetic differences from the Mediterranean Sea populations. To test this and reconstruct the invasion, we assessed the genetic structure of crabs in the Gulf of Cadiz and Alboran Sea. We used sequences of the mitochondrial gene cytochrome c oxidase subunit I (COI), in almost its full length (1511 basepairs), of 149 individuals from three sites along the Spanish Mediterranean coast, two in the Alboran Sea, and two in the Gulf of Cadiz. Our data reveal low genetic variability, with only two haplotypes (here referred to as CSWM1 and CSWM2), compared to its known high genetic diversity in the native range, indicating a strong founder effect in the study region. Here we document an inversion of haplotype predominance between regions, haplotype CSWM2 being dominant in most of the Spanish Mediterranean coast, but less frequent in the Gulf of Cadiz and Alboran Sea. This suggests a secondary introduction of propagules into the investigated area, rather than a new introduction from the native area, nor a natural westward expansion with environmental selection of one haplotype over the other. Further studies with additional populations would help to better unveil the history of yet another invasive species in the Gulf of Cadiz.
Filling Gaps in Trawl Surveys at Sea through Spatiotemporal and Environmental Modelling
Authors: Coro Gianpaolo , Bove Pasquale , Armelloni Enrico Nicola , Masnadi Francesco , Scanu Martina , Scarcella Giuseppe
Published: July 2022

International scientific fishery survey programmes systematically collect samples of target stocks’ biomass and abundance and use them as the basis to estimate stock status in the framework of stock assessment models. The research surveys can also inform decision makers about Essential Fish Habitat conservation and help define harvest control rules based on direct observation of biomass at the sea. However, missed survey locations over the survey years are common in long-term programme data. Currently, modelling approaches to filling gaps in spatiotemporal survey data range from quickly applicable solutions to complex modelling. Most models require setting prior statistical assumptions on spatial distributions, assuming short-term temporal dependency between the data, and scarcely considering the environmental aspects that might have influenced stock presence in the missed locations. This paper proposes a statistical and machine learning based model to fill spatiotemporal gaps in survey data and produce robust estimates for stock assessment experts, decision makers, and regional fisheries management organizations. We apply our model to the SoleMon survey data in North-Central Adriatic Sea (Mediterranean Sea) for 4 stocks: Sepia officinalis, Solea solea, Squilla mantis, and Pecten jacobaeus. We reconstruct the biomass-index (i.e., biomass over the swept area) of 10 locations missed in 2020 (out of the 67 planned) because of several factors, including COVID-19 pandemic related restrictions. We evaluate model performance on 2019 data with respect to an alternative index that assumes biomass proportion consistency over time. Our model’s novelty is that it combines three complementary components. A spatial component estimates stock biomass-index in the missed locations in one year, given the surveyed location’s biomass-index distribution in the same year. A temporal component forecasts, for each missed survey location, biomass-index given the data history of that haul. An environmental component estimates a biomass-index weighting factor based on the environmental suitability of the haul area to species presence. Combining these components allows understanding the interplay between environmental-change drivers, stock presence, and fisheries. Our model formulation is general enough to be applied to other survey data with lower spatial homogeneity and more temporal gaps than the SoleMon dataset.
Laboratory Investigation on Pavement Performance of Basalt Fiber-Reinforced Asphalt Mixture Under the Coupling Effect of Freeze-Thaw Cycles and Aging
Authors: Liang Rongwei , Yu Wei , Luo Zengjie
Published: July 2022

Due to the significant temperature difference and high solar radiation in high-altitude areas, the asphalt pavement has been in freeze-thaw cycles and radiation service conditions for a long time, resulting in a shorter service life. To extend the service life of asphalt pavement in high-altitude areas, this study uses basalt fiber to toughen the asphalt mixture, and the service characteristics of the asphalt pavement under the coupled effects of freeze-thaw cycles and aging were evaluated. First, the freeze-thaw cycles, aging time, and basalt fiber content were selected as independent variables to conduct the Box–Behnken design (BBD) test design. Consequently, the corresponding response surface model was established. Based on the rutting test, three-point bending test, and indirect tensile test, the optimum content of basalt fiber was obtained. Finally, the fatigue properties of the asphalt mixture by the four-point bending fatigue test were compared under the optimum content. The results showed the consequences of freeze-thaw cycles will reduce the road properties of asphalt and give rise to damage to the asphalt; among them, the indirect tensile strength was decreased by 21.7% at most (the number of freeze-thaw cycles from 10 to 30). Aging will reduce the fatigue life of the asphalt mixture, but its dynamic stability, flexural tensile strength, and slitting strength will be enhanced to a certain extent; among them, the dynamic stability can be improved by up to 28.1% (aging from 4 to 12 h). Basalt fiber can increase the flexural tensile strength, dynamic stability, and spitting strength; the optimum content is 0.35% of asphalt mixtures. Furthermore, the fatigue life of basalt fiber-reinforced asphalt mixture can be significantly improved, which can reduce the influence of freeze-thaw cycles and aging. In addition, the unit price of basalt fiber-reinforced asphalt mixture is only 6.9% higher than that of SBS-modified asphalt mixture, which has significant economic benefits. Under experimental conditions, the effect of aging on the properties of the asphalt mixture is greater than that of the freeze-thaw cycle. This research shows that careful consideration of the road behavior of basalt fiber-reinforced asphalt mixture under freeze-thaw cycles and aging is essential for the pavement durability design.
Error Analysis in Numerical Simulation of the Static Pressure Capability of Magnetic Fluid Seals
Authors: Li Zhenghao , Li Decai
Published: July 2022

Magnetic fluid is a typical type of functional fluid which can be magnetized and controlled by an external magnetic field. In magnetic fluid seals, magnetic fluid is attracted in sealing gaps by a magnetic field gradient to form non-contact sealing. Compared to traditional sealing methods, they possess unique advantages such as zero leakage, long lifetime, low friction torque, and high reliability. Although the design and performance estimation of magnetic fluid seals rely mostly on numerical simulation, a number of simplifications or even mistakes during the simulation process exist in previous studies. The error caused by simplifications and mistakes has not been studied, leading to a possible problem of simulation results in reliability and consistency with experimental data. Here, we examined the influence of common simplifications and mistakes in numerical simulation of the static pressure capability of magnetic fluid seals, including material properties, geometric modeling, and theoretical formulas. A novel method of structure optimization based on a derivative-free multiparameter algorithm is also presented. A test bench for magnetic fluid seals is established, and the difference between simulation and experimental results is discussed. This research provides a precise, efficient, and standard procedure for numerical simulation of magnetic fluid seals.
Modified Charge Transport Model Under High-Frequency Unipolar Square Wave Voltage
Authors: Xie Jianxiang , Yan Shen , Shi Mingchen , Zhang Yiyi , Liu Jiefeng
Published: July 2022

As the main insulation material of the power electronic transformer (PET), polyimide (PI) is easy to accumulate space charge under the continuous high-frequency pulse voltage, which will threaten the operation of PET and cause electric field distortion. At present, the microscopic mechanism of charge transport under high-frequency voltage is unclear. Numerical simulation is an effective method to explore the transport characteristics of space charge. The simulation of charge transport under DC voltage is mainly based on the bipolar charge transport (BCT) model. However, the charge transport behaviors under high-frequency pulse voltage cannot be simulated by the traditional models accurately. Given this, based on the BCT model, the High-Frequency Voltage Charge Transport (HFCT) model is proposed, considering nonlinear charge mobility of the polymer and the effect of the frequency. Finally, the space charge and electric field distribution under square pulse wave voltages with different rising times are simulated based on the HVCT model, concluding that the reduction of rising time will promote the accumulation of space charge. In view of this, the HVCT model is expected to optimize the insulation design of PET and provide a reference for the dynamic simulation of space charge.
Parity and Metabolic Syndrome Risk: A Systematic Review and Meta-Analysis of 15 Observational Studies With 62,095 Women
Authors: Sun Ming-Hui , Wen Zhao-Yan , Wang Ran , Gao Chang , Yin Jia-Li , Chang Yu-Jiao , Wu Qi-Jun , Zhao Yu-Hong
Published: July 2022

Background

Epidemiological studies have provided inconsistent evidence of the association between parity and metabolic syndrome (MetS) risk. We conducted this first systematic review and meta-analysis to comprehensively and precisely quantify this topic.

Methods

Comprehensive searches of PubMed, Embase, and the Web of Science databases were conducted to identify observational studies of the association between parity and MetS risk up to 30 January 2022. Study inclusion, data extraction, and quality assessment were checked and reviewed by two investigators independently. Random-effects models were applied to estimate pooled odds ratios (ORs) and 95% CIs. This study has been registered with PROSPERO.

Results

Two high-quality cohorts and thirteen medium-quality cross-sectional studies involving 62,095 women were finally included. Compared with the nulliparous, the pooled OR of MetS for the ever parity was 1.31 (95% CI = 0.91–1.88, I2 = 72.6%, n = 3). Compared with the lowest parity number, the pooled OR of MetS for the highest parity number was 1.38 (95% CI = 1.22–1.57, I2 = 60.7%, n = 12). For the dose-response analysis, the pooled OR of MetS for each increment of one live birth was 1.12 (95% CI = 1.05–1.19, I2 = 78.6%, n = 6). These findings were robust across subgroups and sensitivity analyses. No evidence of heterogeneity between subgroups was indicated by meta-regression analyses.

Conclusion

The findings suggested that parity was associated with an increased risk of MetS. A sufficient number of large prospective cohort studies are required to fully verify our findings.

Systematic Review Registration

[https://www.crd.york.ac.uk/PROSPERO/], identifier [CRD42022307703].
Comparing Standard Keratometry and Total Keratometry Before and After Myopic Corneal Refractive Surgery With a Swept-Source OCT Biometer
Authors: Wang Ziyang , Song Yanzheng , Yang Wenli , Li Dongjun , Chen Wei , Zhao Qi , Liu Qian , Zhai Changbin
Published: July 2022

Background

More recently, the swept-source OCT biometer-IOLMaster 700 has provided direct total corneal power measurement, named total keratometry. This study aims to evaluate whether standard keratometry (SK) and total keratometry (TK) with IOLMaster 700 can accurately reflect the corneal power changes induced by myopic corneal refractive surgery.

Methods

In this study, the biometric data measured with the swept-source OCT biometer—IOLMaster 700 before and 3 months after the myopic corneal refractive surgery were recorded. The changes of biological parameters, including SK, posterior keratometry (PK), and TK, and the difference between SK and TK were compared. In addition, the changes of SK and TK induced by the surgery were compared with the changes of spherical equivalent at the corneal plane (ΔSEco).

Results

A total of 74 eyes (74 patients) were included. The changes of SK, PK, TK, axial length, anterior chamber depth, and lens thickness after refractive surgery were all statistically significant (all p < 0.01), while the change of white-to-white was not (p = 0.075). The difference between SK and TK was −0.03 ± 0.10D before the corneal refractive surgery and increased to −0.78 ± 0.26D after surgery. The changes of SK and the changes of TK induced by the surgery had a good correlation with the changes of SEco (r = 0.97). ΔSK was significantly smaller than ΔSEco, with a difference of −0.65 ± 0.54D (p < 0.01). However, the difference between ΔTK and ΔSEco (0.10 ± 0.50D) was not statistically significant (p = 0.08).

Conclusions

Using SK to reflect the changes induced by the myopic corneal refractive surgery may lead to underestimation, while TK could generate a more accurate result. The new parameter, TK, provided by the IOLMaster 700, appeared to provide an accurate, objective measure of corneal power that closely tracked the refractive change in corneal refractive surgery.
Alloexidiopsis gen. nov., A Revision of Generic Delimitation in Auriculariales (Basidiomycota)
Authors: Liu Shi-Liang , Shen Zi-Qi , Li Qian-Zhu , Liu Xiang-Yang , Zhou Li-Wei
Published: July 2022

Auriculariales is a fungal order with highly diverse morphological traits of basidiomes, which partially leads to a poor understanding of its taxonomic system at the generic level. To identify our recently collected specimens of Auriculariales to a species level, we perform a comprehensive phylogenetic analysis of the generic relationships in Auriculariales. In association with morphological characteristics, a new genus Alloexidiopsis belonging to Auriculariaceae is erected with two new species, namely, A. australiensis and A. schistacea. Moreover, Exidiopsis calcea separated from the generic type E. effusa and Heteroradulum niveum and H. yunnanense recently inaccurately described as members of Heteroradulum are recovered in the clade of Alloexidiopsis. These three species are thus transferred to this new genus. One collection of Exidiopsis grisea also falls in the clade of Alloexidiopsis, whereas another collection of this species is separated far from Alloexidiopsis and E. effusa. Since we have no collection to confirm the species identity of E. grisea, its generic position is uncertain. The main taxonomic morphological differences among Alloexidiopsis and related corticioid genera in Auriculariales are summarized. A key to all the five accepted species of Alloexidiopsis is provided. As two unnamed lineages exist in Alloexidiopsis besides the abovementioned five species, it is assumed that more new species will be revealed from this genus under its current circumscription.
Actinobacteria Community and Their Antibacterial and Cytotoxic Activity on the Weizhou and Xieyang Volcanic Islands in the Beibu Gulf of China
Authors: Wang Lin , Peng Chunyan , Gong Bin , Yang Zicong , Song Jingjing , Li Lu , Xu Lili , Yue Tao , Wang Xiaolin , Yang Mengping , Xu Huimin , Liu Xiong
Published: July 2022

Weizhou Island and Xieyang Island are two large and young volcanic sea islands in the northern part of the South China Sea. In this study, high-throughput sequencing (HTS) of 16S rRNA genes was used to explore the diversity of Actinobacteria in the Weizhou and Xieyang Islands. Moreover, a traditional culture-dependent method was utilized to isolate Actinobacteria, and their antibacterial and cytotoxic activities were detected. The alpha diversity indices (ACE metric) of the overall bacterial communities for the larger island (Weizhou) were higher than those for the smaller island (Xieyang). A beta diversity analysis showed a more dispersive pattern of overall bacterial and actinobacterial communities on a larger island (Weizhou). At the order level, Frankiales, Propionibacteriales, Streptomycetales, Micrococcales, Pseudonocardiales, Micromonosporales, Glycomycetales, Corynebacteriales, and Streptosporangiales were the predominant Actinobacteria. A total of 22.7% of the OTUs shared 88%–95% similarity with some known groups. More interestingly, 15 OTUs formed a distinct and most predominant clade, and shared identities of less than 95% with any known families. This is the first report about this unknown group and their 16S rRNA sequences obtained from volcanic soils. A total of 268 actinobacterial strains were isolated by the culture-dependent method. Among them, 55 Streptomyces species were isolated, representing that 76.6% of the total. S. variabilis and S. flavogriseus were the most abundant. Moreover, some rare Actinobacteria were isolated. These included Micromonospora spp., Nocardia spp., Amycolatopsis spp., Tsukamurella spp., Mycobacterium spp., and Nonomuraea spp. Among them, eight Streptomyces spp. exhibited antibacterial activity against Bacillus cereus. Only three strains inhibited the growth of Escherichia coli. Four strains showed good activity against aquatic pathogenic bacterial strains of Streptococcus iniae. The cytotoxicity assay results showed that 27 strains (10.07%) exhibited cytotoxic activity against HeLa and A549 cell lines. Many actinobacterial strains with cytotoxic activity were identified as rare Actinobacteria, which illustrated that volcanic islands are vast reservoirs for Actinobacteria with promising antibacterial and cytotoxic activity. This study may significantly improve our understanding of actinobacterial communities on volcanic islands. The isolated Actinobacteria showed promising prospects for future use.