bluuebunny/crossref_metadata_2025 huggingface dataset:
Data Supplement from Ubiquitin-like Protein FAT10 Promotes the Invasion and Metastasis of Hepatocellular Carcinoma by Modifying β-Catenin Degradation
Authors: Yuan Rongfa , Wang Kai , Hu Junwen , Yan Chen , Li Ming , Yu Xin , Liu Xiuxia , Lei Jun , Guo Wuhua , Wu Linquan , Hong Kui , Shao Jianghua
Published: March 2023

Supplementary Table S1. Summary of significantly differentially expressed genes in Huh-7-shFAT10 compared with Huh-7-shNC cells.
Data Supplement from Ubiquitin-like Protein FAT10 Promotes the Invasion and Metastasis of Hepatocellular Carcinoma by Modifying β-Catenin Degradation
Authors: Yuan Rongfa , Wang Kai , Hu Junwen , Yan Chen , Li Ming , Yu Xin , Liu Xiuxia , Lei Jun , Guo Wuhua , Wu Linquan , Hong Kui , Shao Jianghua
Published: March 2023

Supplementary Table S2. Primers and shRNA target sequences.
Supplementary Figure 5 from The TGFβ–miR200–MIG6 Pathway Orchestrates the EMT-Associated Kinase Switch That Induces Resistance to EGFR Inhibitors
Authors: Izumchenko Evgeny , Chang Xiaofei , Michailidi Christina , Kagohara Luciane , Ravi Rajani , Paz Keren , Brait Mariana , Hoque Mohammad O. , Ling Shizhang , Bedi Atul , Sidransky David
Published: March 2023

PDF file - 199KB, RNA was extracted from 18 human NSCLCs and 27 pancreatic directly xenografted low passage tumors. Levels of miR200c were measured by quantitative RT-PCR and mRNA levels of Mig6 and EGFR were determined by Affymetrix expression array. Expression levels of A. miR200c, B. Mig6 mRNA or C. EGFR mRNA transcripts were plotted against erlotinib responsiveness.
Supplementary Figure 4 from The TGFβ–miR200–MIG6 Pathway Orchestrates the EMT-Associated Kinase Switch That Induces Resistance to EGFR Inhibitors
Authors: Izumchenko Evgeny , Chang Xiaofei , Michailidi Christina , Kagohara Luciane , Ravi Rajani , Paz Keren , Brait Mariana , Hoque Mohammad O. , Ling Shizhang , Bedi Atul , Sidransky David
Published: March 2023

PDF file - 137KB, A. Mig6(mRNA)/miR200 ratios plotted on the linear scale. Each bar represents the Mig6(mRNA)/miR200 ratio of an indicated cell line. B. The exposure density of both EGFR and Mig6 blotted on the same membrane were quantified by densitometry and the values of Mig6/EGFR ration for every cell line were plotted on the linear scale.
Supplementary Table S2 from GPx2 Suppression of H2O2 Stress Links the Formation of Differentiated Tumor Mass to Metastatic Capacity in Colorectal Cancer
Authors: Emmink Benjamin L. , Laoukili Jamila , Kipp Anna P. , Koster Jan , Govaert Klaas M. , Fatrai Szabolcs , Verheem Andre , Steller Ernst J.A. , Brigelius-Flohé Regina , Jimenez Connie R. , Borel Rinkes Inne H.M. , Kranenburg Onno
Published: March 2023

Supplementary Table S2. Correlation of the expression of the H2O2-response metagene and genes encoding H2O2-scavenging enzymes.
Supplementary Figure 5 from mTOR Signaling Feedback Modulates Mammary Epithelial Differentiation and Restrains Invasion Downstream of PTEN Loss
Authors: Ghosh Susmita , Varela Lidenys , Sood Akshay , Park Ben Ho , Lotan Tamara L.
Published: March 2023

PDF - 1578 KB, BEZ235 functions as mTOR inhibitor, without evidence of PI3K inhibition, and induces invasive protrusions in MCF10A cultures. (A) BEZ235 inhibits mTORC1/mTORC2 without inhibition of PI3K in MCF10A acini.
Supplemental Materials and Methods from Erlotinib Pretreatment Improves Photodynamic Therapy of Non–Small Cell Lung Carcinoma Xenografts via Multiple Mechanisms
Authors: Gallagher-Colombo Shannon M. , Miller Joann , Cengel Keith A. , Putt Mary E. , Vinogradov Sergei A. , Busch Theresa M.
Published: March 2023

Supplemental Materials and Methods. This file contains supplemental materials and methods.
Supplementary Materials and Methods from PAD2 Overexpression in Transgenic Mice Promotes Spontaneous Skin Neoplasia
Authors: McElwee John L. , Mohanan Sunish , Horibata Sachi , Sams Kelly L. , Anguish Lynne J. , McLean Dalton , Cvitaš Iva , Wakshlag Joseph J. , Coonrod Scott A.
Published: March 2023

Supplementary Materials and Methods
Supplementary Figures 1-8 from CD38-Expressing Myeloid-Derived Suppressor Cells Promote Tumor Growth in a Murine Model of Esophageal Cancer
Authors: Karakasheva Tatiana A. , Waldron Todd J. , Eruslanov Evgeniy , Kim Sang-Bae , Lee Ju-Seog , O'Brien Shaun , Hicks Philip D. , Basu Devraj , Singhal Sunil , Malavasi Fabio , Rustgi Anil K.
Published: March 2023

Supplementary Figures 1-8. Supplementary Fig. 1. CD11b+Gr1+ populations were isolated by FACS from spleens of tumor-bearing p120-/- and control mice. Supplementary Fig. 2. CD38 is expressed by the CD11b+Gr1+ population in a murine model of Barrett's Esophagus. Supplementary Fig. 3. The HNM007 tumors induce CD38 expression on MDSC population similarly to the autochthonous p120-/- tumors. Supplementary Fig. 4. Immunohistochemical analysis of HNM007 tumors co-injected with CD38High or CD38Low MDSCs. Supplementary Fig. 5. CD38high CD11b+Gr1+ cells produce higher levels of iNOS and pNFκB. Supplementary Fig.6. Network analysis of differentially regulated genes in CD38high and CD38low MDSCs shows upregulation of RB1 pathway. Supplementary Fig.7. Distribution of G-MDSC, M-MDSC and mature monocytes is perturbed in tumor-bearing Cd38-/- mice. Supplementary Fig. 8. CD38 is expressed on human MDSC-like cell population that is expanded in the peripheral blood of advanced-stage cancer patients.
Supplementary Figures S1-S7 from Interleukin-6 Stimulates Defective Angiogenesis
Authors: Gopinathan Ganga , Milagre Carla , Pearce Oliver M.T. , Reynolds Louise E. , Hodivala-Dilke Kairbaan , Leinster David A. , Zhong Haihong , Hollingsworth Robert E. , Thompson Richard , Whiteford James R. , Balkwill Frances
Published: March 2023

Supplementary Figures S1-S7. Western blot quantification of pERK and pSTAT3 from aortic lysates (S1); Western blot quantification of pERK and pSTAT3 from MLEC lysates (S2); Western blot analysis and quantification of pERK and pSTAT3 from HUVEC lysates (S3); IL-6 reduces the expression of NG2 in the aortic ring vessels (S4); Regulation of Notch signaling and Angiopoietin2 by VEGF and IL-6 (S5); Effects of VEGF and IL-6 treatment on HUVEC (S6); Effects of anti-IL-6 antibody on in vivo IGROV-1 vasculature (S7).
Supplementary Figure Legends from Interleukin-6 Stimulates Defective Angiogenesis
Authors: Gopinathan Ganga , Milagre Carla , Pearce Oliver M.T. , Reynolds Louise E. , Hodivala-Dilke Kairbaan , Leinster David A. , Zhong Haihong , Hollingsworth Robert E. , Thompson Richard , Whiteford James R. , Balkwill Frances
Published: March 2023

Legend for Supplementary Figures S1-S7.
Supplementary Figure 2 from Pharmacological Inhibition of β3 Integrin Reduces the Inflammatory Toxicities Caused by Oncolytic Adenovirus without Compromising Anticancer Activity
Authors: Browne Ashley , Tookman Laura A. , Ingemarsdotter Carin K. , Bouwman Russell D. , Pirlo Katrina , Wang Yaohe , McNeish Iain A. , Lockley Michelle
Published: March 2023

Female CD1nu/nu mice with intraperitoneal SKOV3ip1 tumours were injected IP with dl922-947 (10 particles) or vehicle. mRNA and protein were extracted from the same tumours and cytokines at 1, 6 and 24 hours were compared to cytokines at 0 hours (3-5 mice were analysed per time point).
Supplementary Fig 1 from Naturally Occurring Mutations in the MPS1 Gene Predispose Cells to Kinase Inhibitor Drug Resistance
Authors: Gurden Mark D. , Westwood Isaac M. , Faisal Amir , Naud Sébastien , Cheung Kwai-Ming J. , McAndrew Craig , Wood Amy , Schmitt Jessica , Boxall Kathy , Mak Grace , Workman Paul , Burke Rosemary , Hoelder Swen , Blagg Julian , Van Montfort Rob L.M. , Linardopoulos Spiros
Published: March 2023

Expression of the p.S611G, p.I531M and Dbl MPS1 mutant constructs in DLD1 Flp-In TRex cells recues the spindle assembly checkpoint defect following AZ3146 treatment.
Supplementary Figures S1-S10 from Rapamycin Impairs Antitumor CD8+ T-cell Responses and Vaccine-Induced Tumor Eradication
Authors: Chaoul Nada , Fayolle Catherine , Desrues Belinda , Oberkampf Marine , Tang Alexandre , Ladant Daniel , Leclerc Claude
Published: March 2023

Supplementary Figure S1. T-cell gating strategy in the spleen, lymph nodes and tumors. Supplementary Figure S2. Rapamycin treatments inhibit the lymphocyte recruitment to the spleen and abrogate CyaA-E7's effect. Supplementary Figure S3. MDSC gating strategies in the spleens, lymph nodes and tumors. Supplementary Figure S4. Impact of high-dose rapamycin treatment on CD8+ T-cells in the lymphoid tissues and tumor. Supplementary Figure S5. Impact of high-dose rapamycin treatment on tumor-infiltrating CD4+ T-cells. Supplementary Figure S6. Impact of low-dose rapamycin treatment on lymphoid recruitment to spleen and lymph nodes. Supplementary Figure S7. Impact of the low-dose rapamycin treatment on tumor-infiltrating T-cells. Supplementary Figure S8. Impact of the low-dose rapamycin treatment on CD8+ T-cells in the spleen and LN. Supplementary Figure S9. Lack of inhibitory effect of an early treatment by rapamycin. Supplementary Figure S10. Rapamycin inhibits the OVA-specific CTL responses in a dose-dependent manner. Supplementary Figure Legends. Legends for Supplementary Figures S1-S10.
Supplementary Figure Legends from Tenascin-C Protects Cancer Stem–like Cells from Immune Surveillance by Arresting T-cell Activation
Authors: Jachetti Elena , Caputo Sara , Mazzoleni Stefania , Brambillasca Chiara Svetlana , Parigi Sara Martina , Grioni Matteo , Piras Ignazio Stefano , Restuccia Umberto , Calcinotto Arianna , Freschi Massimo , Bachi Angela , Galli Rossella , Bellone Matteo
Published: March 2023

Supplementary Figure Legends. Legends for Supplementary Figures S1-S6.
Supplementary Tables S1-S4 from Androgen-Induced TMPRSS2 Activates Matriptase and Promotes Extracellular Matrix Degradation, Prostate Cancer Cell Invasion, Tumor Growth, and Metastasis
Authors: Ko Chun-Jung , Huang Cheng-Chung , Lin Hsin-Ying , Juan Chun-Pai , Lan Shao-Wei , Shyu Hsin-Yi , Wu Shang-Ru , Hsiao Pei-Wen , Huang Hsiang-Po , Shun Chia-Tung , Lee Ming-Shyue
Published: March 2023

Supplementary Tables S1-S4. Oligonucleotide primers used in this study (S1); Antibodies used in this study (S2); List of proteins identified from the conditioned media by LC-MS/MS analysis (S3); List of protein identities in the 160-kDa band of matrigel after LC/MS/MS analysis (S4).
supplementary figure 2 from Microenvironmental Remodeling as a Parameter and Prognostic Factor of Heterogeneous Leukemogenesis in Acute Myelogenous Leukemia
Authors: Kim Jin-A , Shim Jae-Seung , Lee Ga-Young , Yim Hyeon Woo , Kim Tae-Min , Kim Myungshin , Leem Sun-Hee , Lee Jong-Wook , Min Chang-Ki , Oh Il-Hoan
Published: March 2023

supplementary figure 2: expression levels of cytokine-related genes in MSCs co-cultured with normal or AML CD34+ cells.
Supplementary Figure S3 from α-Tubulin Acetylation Elevated in Metastatic and Basal-like Breast Cancer Cells Promotes Microtentacle Formation, Adhesion, and Invasive Migration
Authors: Boggs Amanda E. , Vitolo Michele I. , Whipple Rebecca A. , Charpentier Monica S. , Goloubeva Olga G. , Ioffe Olga B. , Tuttle Kimberly C. , Slovic Jana , Lu Yiling , Mills Gordon B. , Martin Stuart S.
Published: March 2023

Supplementary Figure S3. αTAT1-GFP or GFP control transfection does not affect the α-tubulin network or proliferation.
Supplementary Information from Breast Cancer Cells Respond Differentially to Modulation of TGFβ2 Signaling after Exposure to Chemotherapy or Hypoxia
Authors: O'Brien Siobhan K. , Chen Liang , Zhong Wenyan , Armellino Douglas , Yu Jiyang , Loreth Christine , Follettie Maximillian , Damelin Marc
Published: March 2023

Legends for supplementary figures; Supplementary materials and methods
Supplemental Figure 5 from Mig-6 Suppresses Endometrial Cancer Associated with Pten Deficiency and ERK Activation
Authors: Kim Tae Hoon , Yoo Jung-Yoon , Kim Hong Im , Gilbert Jenifer , Ku Bon Jeong , Li Jane , Mills Gordon B. , Broaddus Russell R. , Lydon John P. , Lim Jeong Mook , Yoon Ho-Geun , Jeong Jae-Wook
Published: March 2023

Supplemental Figure 5. Immunohistochemical analysis
Supplemental Figure 2 from Mig-6 Suppresses Endometrial Cancer Associated with Pten Deficiency and ERK Activation
Authors: Kim Tae Hoon , Yoo Jung-Yoon , Kim Hong Im , Gilbert Jenifer , Ku Bon Jeong , Li Jane , Mills Gordon B. , Broaddus Russell R. , Lydon John P. , Lim Jeong Mook , Yoon Ho-Geun , Jeong Jae-Wook
Published: March 2023

Supplemental Figure 2. Generation of overexpression Mig-6 and Pten Ablation Mice using PR-cre mice model in the Murine Uterus.
Supplemental Figure 1 from Mig-6 Suppresses Endometrial Cancer Associated with Pten Deficiency and ERK Activation
Authors: Kim Tae Hoon , Yoo Jung-Yoon , Kim Hong Im , Gilbert Jenifer , Ku Bon Jeong , Li Jane , Mills Gordon B. , Broaddus Russell R. , Lydon John P. , Lim Jeong Mook , Yoon Ho-Geun , Jeong Jae-Wook
Published: March 2023

Supplemental Figure 1. Construction of the targeting vectors and generation of Mig-6Over mice.
Supplementary Table 2 from PML/RARα-Regulated miR-181a/b Cluster Targets the Tumor Suppressor RASSF1A in Acute Promyelocytic Leukemia
Authors: Bräuer-Hartmann Daniela , Hartmann Jens-Uwe , Wurm Alexander Arthur , Gerloff Dennis , Katzerke Christiane , Verga Falzacappa Maria Vittoria , Pelicci Pier Giuseppe , Müller-Tidow Carsten , Tenen Daniel G. , Niederwieser Dietger , Behre Gerhard
Published: March 2023

Genetic and morphological characteristics of AML patients and healthy donors used for miR-181a/b expression and RASSF1A protein analysis.
Supplementary Figure 4 from Breast Cancer Detection by B7-H3–Targeted Ultrasound Molecular Imaging
Authors: Bachawal Sunitha V. , Jensen Kristin C. , Wilson Katheryne E. , Tian Lu , Lutz Amelie M. , Willmann Jürgen K.
Published: March 2023

Supplementary Figure 4. Evaluation of B7-H3 Expression on Vascular Endothelial Cells.
Supplementary Figure 3 from Breast Cancer Detection by B7-H3–Targeted Ultrasound Molecular Imaging
Authors: Bachawal Sunitha V. , Jensen Kristin C. , Wilson Katheryne E. , Tian Lu , Lutz Amelie M. , Willmann Jürgen K.
Published: March 2023

Supplementary Figure 3. Binding Specificity of MBB7-H3
Supplemental Figures S1-S5 from SYK Is a Candidate Kinase Target for the Treatment of Advanced Prostate Cancer
Authors: Ghotra Veerander P.S. , He Shuning , van der Horst Geertje , Nijhoff Steffen , de Bont Hans , Lekkerkerker Annemarie , Janssen Richard , Jenster Guido , van Leenders Geert J.L.H. , Hoogland A. Marije M. , Verhoef Esther I. , Baranski Zuzanna , Xiong Jiangling , van de Water Bob , van der Pluijm Gabri , Snaar-Jagalska B. Ewa , Danen Erik H.J.
Published: March 2023

Supplemental Figures S1-S5 Figure S1. Whole organism automated bioimaging assay differentiates between androgen independent / metastatic and androgen-dependent / non-metastatic prostate cancer cells. Figure S2. SYK depletion attenuates PC3 dissemination in zebrafish xenografts. Figure S3. Reduced protein expression of SYK in PC3shSYK cells. Figure S4. SYK depletion attenuates PC3 3D ECM invasion. Figure S5. SYK depletion attenuates colony formation but does not affect AKT activity or CD44 protein expression.
Supplementary Tables S1-S2 from miR-25 Modulates Invasiveness and Dissemination of Human Prostate Cancer Cells via Regulation of αv- and α6-Integrin Expression
Authors: Zoni E. , van der Horst G. , van de Merbel A.F. , Chen L. , Rane J.K. , Pelger R.C.M. , Collins A.T. , Visakorpi T. , Snaar-Jagalska B.E. , Maitland N.J. , van der Pluijm G.
Published: March 2023

Supplementary Tables S1-S2. Real time-qPCR primers (S1); Primers used for cloning and mutagenesis (S2).
Supplemental Figures S1-S6 from Chemotherapeutic Agents Subvert Tumor Immunity by Generating Agonists of Platelet-Activating Factor
Authors: Sahu Ravi P. , Ocana Jesus A. , Harrison Kathleen A. , Ferracini Matheus , Touloukian Christopher E. , Al-Hassani Mohammed , Sun Louis , Loesch Mathew , Murphy Robert C. , Althouse Sandra K. , Perkins Susan M. , Speicher Paul J. , Tyler Douglas S. , Konger Raymond L. , Travers Jeffrey B.
Published: March 2023

Supplemental Figures S1-S6
Supplementary Video S1 from Real-time Imaging of the Resection Bed Using a Handheld Probe to Reduce Incidence of Microscopic Positive Margins in Cancer Surgery
Authors: Erickson-Bhatt Sarah J. , Nolan Ryan M. , Shemonski Nathan D. , Adie Steven G. , Putney Jeffrey , Darga Donald , McCormick Daniel T. , Cittadine Andrew J. , Zysk Adam M. , Marjanovic Marina , Chaney Eric J. , Monroy Guillermo L. , South Fredrick A. , Cradock Kimberly A. , Liu Z. George , Sundaram Magesh , Ray Partha S. , Boppart Stephen A.
Published: March 2023

Positive surgical margin. Video OCT cross-sectional images of a positive tumor margin from the in vivo resection bed of a 72 year-old female WLE patient with invasive ductal carcinoma as the surgeon sweeps the handheld probe along the margin.
Supplementary Figure S4 from Mdm2 and Aurora Kinase A Inhibitors Synergize to Block Melanoma Growth by Driving Apoptosis and Immune Clearance of Tumor Cells
Authors: Vilgelm Anna E. , Pawlikowski Jeff S. , Liu Yan , Hawkins Oriana E. , Davis Tyler A. , Smith Jessica , Weller Kevin P. , Horton Linda W. , McClain Colt M. , Ayers Gregory D. , Turner David C. , Essaka David C. , Stewart Clinton F. , Sosman Jeffrey A. , Kelley Mark C. , Ecsedy Jeffrey A. , Johnston Jeffrey N. , Richmond Ann
Published: March 2023

Supplementary Figure S4. Combined (-)-Nutlin-3 and MLN8237 treatment induces cell death in mouse B16F0 melanoma cells in vitro and in vivo.
Supplementary Tables S1-S6 from Leptin–STAT3–G9a Signaling Promotes Obesity-Mediated Breast Cancer Progression
Authors: Chang Chao-Ching , Wu Meng-Ju , Yang Jer-Yen , Camarillo Ignacio G. , Chang Chun-Ju
Published: March 2023

Supplementary Tables S1-S6. List of proteins with expression levels significantly changed in MCF7 cells under leptin treatment using antibody array (S1); G9a is a new STAT3-associated protein under leptin treatment (S2); STAT3-G9a regulates a cohort of genes involved in cell differentiation process (S3); Body composition analysis from DEXA scans (S4); Categorization of tumor number and tumor type in each group of animals (S5); Elevated LEP, p-STAT3, and OBR levels are correlated with reduced miR-200c expression in diet-induced obesity and breast cancer rats (S6).
Supplementary Figure Legends from Tumor-Promoting Desmoplasia Is Disrupted by Depleting FAP-Expressing Stromal Cells
Authors: Lo Albert , Wang Liang-Chuan S. , Scholler John , Monslow James , Avery Diana , Newick Kheng , O'Brien Shaun , Evans Rebecca A. , Bajor David J. , Clendenin Cynthia , Durham Amy C. , Buza Elizabeth L. , Vonderheide Robert H. , June Carl H. , Albelda Steven M. , Puré Ellen
Published: March 2023

Supplementary Figure Legend 1-8.
Supplementary Figure 3 from Tumor-Promoting Desmoplasia Is Disrupted by Depleting FAP-Expressing Stromal Cells
Authors: Lo Albert , Wang Liang-Chuan S. , Scholler John , Monslow James , Avery Diana , Newick Kheng , O'Brien Shaun , Evans Rebecca A. , Bajor David J. , Clendenin Cynthia , Durham Amy C. , Buza Elizabeth L. , Vonderheide Robert H. , June Carl H. , Albelda Steven M. , Puré Ellen
Published: March 2023

FAP-CAR T cells restrict AE17.OVA tumor growth through reduced proliferation, increased apoptosis and altered tumor stroma.
Supplementary Table S6 from Combined Label-Free Quantitative Proteomics and microRNA Expression Analysis of Breast Cancer Unravel Molecular Differences with Clinical Implications
Authors: Gámez-Pozo Angelo , Berges-Soria Julia , Arevalillo Jorge M. , Nanni Paolo , López-Vacas Rocío , Navarro Hilario , Grossmann Jonas , Castaneda Carlos A. , Main Paloma , Díaz-Almirón Mariana , Espinosa Enrique , Ciruelos Eva , Fresno Vara Juan Ángel
Published: March 2023

Supplementary Table S6. Normalized expression values from the 90 miRNAs analyzed.
Supplementary Table S1 from PLK1 Phosphorylates PAX3-FOXO1, the Inhibition of Which Triggers Regression of Alveolar Rhabdomyosarcoma
Authors: Thalhammer Verena , Lopez-Garcia Laura A. , Herrero-Martin David , Hecker Regina , Laubscher Dominik , Gierisch Maria E. , Wachtel Marco , Bode Peter , Nanni Paolo , Blank Bernd , Koscielniak Ewa , Schäfer Beat W.
Published: March 2023

Supplementary Table S1. PAX3-FOXO1 regulating kinases identified by siRNA screen.
Supplementary Figures 1-4 from Mechanistic Rationale to Target PTEN-Deficient Tumor Cells with Inhibitors of the DNA Damage Response Kinase ATM
Authors: McCabe Nuala , Hanna Conor , Walker Steven M. , Gonda David , Li Jie , Wikstrom Katarina , Savage Kienan I. , Butterworth Karl T. , Chen Clark , Harkin D. Paul , Prise Kevin M. , Kennedy Richard D.
Published: March 2023

Supplementary Figures 1-4. Figure 1: ATM is a potential drug target for PTEN-deficient cells Figure 2: The synthetic lethality with PTEN loss and ATM inhibition is independent of AKT function Figure 3: The synthetic lethality with PTEN loss and ATM inhibition is independent of RAD51 function Supplementary Figure 4: In vivo efficacy of ATM inhibition with PTEN loss
Supplementary Table S3 from Genetic Deletion of AEG-1 Prevents Hepatocarcinogenesis
Authors: Robertson Chadia L. , Srivastava Jyoti , Siddiq Ayesha , Gredler Rachel , Emdad Luni , Rajasekaran Devaraja , Akiel Maaged , Shen Xue-Ning , Guo Chunqing , Giashuddin Shah , Wang Xiang-Yang , Ghosh Shobha , Subler Mark A. , Windle Jolene J. , Fisher Paul B. , Sarkar Devanand
Published: March 2023

Number of liver nodules in DEN-treated WT and AEG-1KO mice.
Supplementary Methods and References from Genetic Deletion of AEG-1 Prevents Hepatocarcinogenesis
Authors: Robertson Chadia L. , Srivastava Jyoti , Siddiq Ayesha , Gredler Rachel , Emdad Luni , Rajasekaran Devaraja , Akiel Maaged , Shen Xue-Ning , Guo Chunqing , Giashuddin Shah , Wang Xiang-Yang , Ghosh Shobha , Subler Mark A. , Windle Jolene J. , Fisher Paul B. , Sarkar Devanand
Published: March 2023

Description of additional methods and procedures used in the study. Also includes supplementary references.
Supplemental Table S1 from Identification and Characterization of Tyrosine Kinase Nonreceptor 2 Mutations in Leukemia through Integration of Kinase Inhibitor Screening and Genomic Analysis
Authors: Maxson Julia E. , Abel Melissa L. , Wang Jinhua , Deng Xianming , Reckel Sina , Luty Samuel B. , Sun Huahang , Gorenstein Julie , Hughes Seamus B. , Bottomly Daniel , Wilmot Beth , McWeeney Shannon K. , Radich Jerald , Hantschel Oliver , Middleton Richard E. , Gray Nathanael S. , Druker Brian J. , Tyner Jeffrey W.
Published: March 2023

Enzymatic IC50 of potential targets for XMD8-87 and XMD16-5.
Supplementary Table S1 - S2 from TWIST1-Induced miR-424 Reversibly Drives Mesenchymal Programming while Inhibiting Tumor Initiation
Authors: Drasin David J. , Guarnieri Anna L. , Neelakantan Deepika , Kim Jihye , Cabrera Joshua H. , Wang Chu-An , Zaberezhnyy Vadym , Gasparini Pierluigi , Cascione Luciano , Huebner Kay , Tan Aik-Choon , Ford Heide L.
Published: March 2023

MicroRNA microarray table results after (Table S1) 4 days and (Table S2) 12 days of TWIST1 induction.
Supplementary Figure S7 from TWIST1-Induced miR-424 Reversibly Drives Mesenchymal Programming while Inhibiting Tumor Initiation
Authors: Drasin David J. , Guarnieri Anna L. , Neelakantan Deepika , Kim Jihye , Cabrera Joshua H. , Wang Chu-An , Zaberezhnyy Vadym , Gasparini Pierluigi , Cascione Luciano , Huebner Kay , Tan Aik-Choon , Ford Heide L.
Published: March 2023

Supplementary Figure S7 MiR-424 regulates many genes associated with EMT and cancer stemness. Effects of MCF12A cells stably expressing constitutive miR-424 on (A) known downregulated genes in an EMT signature (1) and on (B) known upregulated genes in a breast cancer stem cell signature (2), as demonstrated using RNA-seq with GSEA. TargetScan-predicted miR-424 binding sites (blue, asterisk) are statistically enriched in the downregulated genes, as assessed using a hypergeometric test with multiple correction permutations (A: p<10-5, B: p=0.002). Levels of TGFBR3, by qPCR, in (C) HMLE and (D) MCF12A cells stably expressing miR-424. SEM shown. **p<0.01, two-tailed unpaired t-test. (E) Flow cytometry for TGFBR3 after transfection of a rescue construct into SUM149PT cells expressing miR-424.
Supplementary Figure S6 from TWIST1-Induced miR-424 Reversibly Drives Mesenchymal Programming while Inhibiting Tumor Initiation
Authors: Drasin David J. , Guarnieri Anna L. , Neelakantan Deepika , Kim Jihye , Cabrera Joshua H. , Wang Chu-An , Zaberezhnyy Vadym , Gasparini Pierluigi , Cascione Luciano , Huebner Kay , Tan Aik-Choon , Ford Heide L.
Published: March 2023

Supplementary Figure S6 MiR-424 is post-transcriptionally regulated in vitro. Primary and mature miR-424 levels, by qPCR, in (A) HMLE cells constitutively expressing SNAI1 and in (B) HMLER cells constitutively expressing TWIST1 or SNAI1, after passaging the cell lines for longer than 20 days. SEM shown, n{greater than or equal to}3. *p<0.05, **p<0.01. (A) Two-tailed unpaired t-test and (B) one-way ANOVA with Bonferroni post-test.
Supplemental Figures 1 - 2 from Hyperthermia Sensitizes Glioma Stem-like Cells to Radiation by Inhibiting AKT Signaling
Authors: Man Jianghong , Shoemake Jocelyn D. , Ma Tuopu , Rizzo Anthony E. , Godley Andrew R. , Wu Qiulian , Mohammadi Alireza M. , Bao Shideng , Rich Jeremy N. , Yu Jennifer S.
Published: March 2023

Supplemental Figure 1. Human phospho-kinase array. Supplemental Figure 2. Hyperthermia inhibits radiation-induced AKT activation in GSCs.
Supplementary Materials and Methods from CD271 Expression on Patient Melanoma Cells Is Unstable and Unlinked to Tumorigenicity
Authors: Boyle Samantha E. , Fedele Clare G. , Corbin Vincent , Wybacz Elisha , Szeto Pacman , Lewin Jeremy , Young Richard J. , Wong Annie , Fuller Robert , Spillane John , Speakman David , Donahoe Simon , Pohl Miklos , Gyorki David , Henderson Michael A. , Johnstone Ricky W. , Papenfuss Anthony T. , Shackleton Mark
Published: March 2023

Description of additional methods and procedures used in the study.
Supplementary Table 2 from Tumor-Derived Osteopontin Reprograms Normal Mammary Fibroblasts to Promote Inflammation and Tumor Growth in Breast Cancer
Authors: Sharon Yoray , Raz Yael , Cohen Noam , Ben-Shmuel Amir , Schwartz Hila , Geiger Tamar , Erez Neta
Published: March 2023

Table 2: Summary of proteomics analysis: highest intensity extracellular proteins in tumor cell CM.
Supplemental Figure S2 from Targeted Deletion of p53 in Lgr5-Expressing Intestinal Stem Cells Promotes Colon Tumorigenesis in a Preclinical Model of Colitis-Associated Cancer
Authors: Davidson Laurie A. , Callaway Evelyn S. , Kim Eunjoo , Weeks Brad R. , Fan Yang-Yi , Allred Clinton D. , Chapkin Robert S.
Published: March 2023

Lack of an effect of colonic GFP+ stem cell targeted cre recombinase in the absence of gene floxing.
Supplemental Figure Legend from Targeted Deletion of p53 in Lgr5-Expressing Intestinal Stem Cells Promotes Colon Tumorigenesis in a Preclinical Model of Colitis-Associated Cancer
Authors: Davidson Laurie A. , Callaway Evelyn S. , Kim Eunjoo , Weeks Brad R. , Fan Yang-Yi , Allred Clinton D. , Chapkin Robert S.
Published: March 2023

Legend for Supplemental Figures S1-S5.
Figure S3 from Cell Cycle–Dependent Mechanisms Underlie Vincristine-Induced Death of Primary Acute Lymphoblastic Leukemia Cells
Authors: Kothari Anisha , Hittelman Walter N. , Chambers Timothy C.
Published: March 2023

Supplementary Figure 3
Suppl. Movie 3 from LIM Kinase Inhibitor Pyr1 Reduces the Growth and Metastatic Load of Breast Cancers
Authors: Prunier Chloé , Josserand Véronique , Vollaire Julien , Beerling Evelyne , Petropoulos Christos , Destaing Olivier , Montemagno Christopher , Hurbin Amandine , Prudent Renaud , de Koning Leanne , Kapur Reuben , Cohen Pascale A. , Albiges-Rizo Corinne , Coll Jean-Luc , van Rheenen Jacco , Billaud Marc , Lafanechère Laurence
Published: March 2023

MDA-MB-231 Dendra2 tumors followed by intravital microscopy after 8 days of Pyr1 treatment
Figure S1 from Cell Cycle–Dependent Mechanisms Underlie Vincristine-Induced Death of Primary Acute Lymphoblastic Leukemia Cells
Authors: Kothari Anisha , Hittelman Walter N. , Chambers Timothy C.
Published: March 2023

Supplementary Figure 1
Supplemental Figure Legends from CSF1 Receptor Targeting in Prostate Cancer Reverses Macrophage-Mediated Resistance to Androgen Blockade Therapy
Authors: Escamilla Jemima , Schokrpur Shiruyeh , Liu Connie , Priceman Saul J. , Moughon Diana , Jiang Ziyue , Pouliot Frederic , Magyar Clara , Sung James L. , Xu Jingying , Deng Gang , West Brian L. , Bollag Gideon , Fradet Yves , Lacombe Louis , Jung Michael E. , Huang Jiaoti , Wu Lily
Published: March 2023

Supplemental Figure Legends from CSF1 Receptor Targeting in Prostate Cancer Reverses Macrophage-Mediated Resistance to Androgen Blockade Therapy
Prunier et al. Supplementary information from LIM Kinase Inhibitor Pyr1 Reduces the Growth and Metastatic Load of Breast Cancers
Authors: Prunier Chloé , Josserand Véronique , Vollaire Julien , Beerling Evelyne , Petropoulos Christos , Destaing Olivier , Montemagno Christopher , Hurbin Amandine , Prudent Renaud , de Koning Leanne , Kapur Reuben , Cohen Pascale A. , Albiges-Rizo Corinne , Coll Jean-Luc , van Rheenen Jacco , Billaud Marc , Lafanechère Laurence
Published: March 2023

Supplementary information, i.e. suppplementary table, supplemenatry figures and movies legends and supplementary materiel and methods
Supplemental Figure 6 from CSF1 Receptor Targeting in Prostate Cancer Reverses Macrophage-Mediated Resistance to Androgen Blockade Therapy
Authors: Escamilla Jemima , Schokrpur Shiruyeh , Liu Connie , Priceman Saul J. , Moughon Diana , Jiang Ziyue , Pouliot Frederic , Magyar Clara , Sung James L. , Xu Jingying , Deng Gang , West Brian L. , Bollag Gideon , Fradet Yves , Lacombe Louis , Jung Michael E. , Huang Jiaoti , Wu Lily
Published: March 2023

Chemical structure of PLX3397.
Figure S3 from ERAP1 Regulates Natural Killer Cell Function by Controlling the Engagement of Inhibitory Receptors
Authors: Cifaldi Loredana , Romania Paolo , Falco Michela , Lorenzi Silvia , Meazza Raffaella , Petrini Stefania , Andreani Marco , Pende Daniela , Locatelli Franco , Fruci Doriana
Published: March 2023

Supplementary Figure S3 shows MHC class I surface expression in shERAP1-DAOY cells pulsed with the indicated peptides.
Supplementary Figure Legends from PARD3 Inactivation in Lung Squamous Cell Carcinomas Impairs STAT3 and Promotes Malignant Invasion
Authors: Bonastre Ester , Verdura Sara , Zondervan Ilse , Facchinetti Federica , Lantuejoul Sylvie , Chiara Maria Dolores , Rodrigo Juan Pablo , Carretero Julian , Condom Enric , Vidal Agustin , Sidransky David , Villanueva Alberto , Roz Luca , Brambilla Elisabeth , Savola Suvi , Sanchez-Cespedes Montse
Published: March 2023

Supplementary Figure Legends
Supplementary Video 3 from Three-Dimensional Breast Cancer Models Mimic Hallmarks of Size-Induced Tumor Progression
Authors: Singh Manjulata , Mukundan Shilpaa , Jaramillo Maria , Oesterreich Steffi , Sant Shilpa
Published: March 2023

E-cad staining of 600 μm T47D microtumors migrating out of the hydrogel microwells on day 6
Supplementary Video 1 from Three-Dimensional Breast Cancer Models Mimic Hallmarks of Size-Induced Tumor Progression
Authors: Singh Manjulata , Mukundan Shilpaa , Jaramillo Maria , Oesterreich Steffi , Sant Shilpa
Published: March 2023

MCF7 600 μm microtumor exhibit presence of Vimentin on the periphery and outer layer of cells
Supplementary Figure S3 from Enhanced Histone Deacetylase Activity in Malignant Melanoma Provokes RAD51 and FANCD2-Triggered Drug Resistance
Authors: Krumm Andrea , Barckhausen Christina , Kücük Pelin , Tomaszowski Karl-Heinz , Loquai Carmen , Fahrer Jörg , Krämer Oliver Holger , Kaina Bernd , Roos Wynand Paul
Published: March 2023

Class I HDACs protect melanoma cells in vivo. (A) Effect of HDAC inhibition on growth inhibition of A375 melanoma xenografts following TMZ. Tumor volume is shown as a function of time. See materials and methods for detailed treatment conditions. Data are represented as mean {plus minus} SEM. *p<0.05. (B) Effect of treatment on the weight of the mice carrying A375 melanoma xenografts as a function of time.
Supplementary Figure 3 from Ibrutinib Exerts Potent Antifibrotic and Antitumor Activities in Mouse Models of Pancreatic Adenocarcinoma
Authors: Massó-Vallés Daniel , Jauset Toni , Serrano Erika , Sodir Nicole M. , Pedersen Kim , Affara Nesrine I. , Whitfield Jonathan R. , Beaulieu Marie-Eve , Evan Gerard I. , Elias Laurence , Arribas Joaquín , Soucek Laura
Published: March 2023

Ibrutinib does not affect growth of pancreatic cancer cell lines.
Supplementary Methods and Reference from Diverse Targets of β-Catenin during the Epithelial–Mesenchymal Transition Define Cancer Stem Cells and Predict Disease Relapse
Authors: Chang Yi-Wen , Su Ying-Jhen , Hsiao Michael , Wei Kuo-Chen , Lin Wei-Hsin , Liang Chi-Jung , Chen Shin-Cheh , Lee Jia-Lin
Published: March 2023

Supplementary Methods and Reference: Description of additional methods and procedures used in the study. Also includes Supplementary Reference.
Supplementary Figure S3 from Diverse Targets of β-Catenin during the Epithelial–Mesenchymal Transition Define Cancer Stem Cells and Predict Disease Relapse
Authors: Chang Yi-Wen , Su Ying-Jhen , Hsiao Michael , Wei Kuo-Chen , Lin Wei-Hsin , Liang Chi-Jung , Chen Shin-Cheh , Lee Jia-Lin
Published: March 2023

Supplementary Figure S3: Representative examples of SP using cells after subsequent serial selection (LM-HM20) indicated, related to Fig. 1C.
Supplementary Figure S1 from Diverse Targets of β-Catenin during the Epithelial–Mesenchymal Transition Define Cancer Stem Cells and Predict Disease Relapse
Authors: Chang Yi-Wen , Su Ying-Jhen , Hsiao Michael , Wei Kuo-Chen , Lin Wei-Hsin , Liang Chi-Jung , Chen Shin-Cheh , Lee Jia-Lin
Published: March 2023

Supplementary Figure S1: Functional fractionation of cancer cells by invasive assays.
Supplementary Table S4 from The miR-146b-3p/PAX8/NIS Regulatory Circuit Modulates the Differentiation Phenotype and Function of Thyroid Cells during Carcinogenesis
Authors: Riesco-Eizaguirre Garcilaso , Wert-Lamas León , Perales-Patón Javier , Sastre-Perona Ana , Fernández Lara P. , Santisteban Pilar
Published: March 2023

Among the list of target genes of miR146b there are four genes involved in thyroid differentiation including NIS and PAX8.
Supplementary Figure S1 from The miR-146b-3p/PAX8/NIS Regulatory Circuit Modulates the Differentiation Phenotype and Function of Thyroid Cells during Carcinogenesis
Authors: Riesco-Eizaguirre Garcilaso , Wert-Lamas León , Perales-Patón Javier , Sastre-Perona Ana , Fernández Lara P. , Santisteban Pilar
Published: March 2023

Reads mapping with the genome.
Supplementary Figure S2 from Pulsed High-Intensity Focused Ultrasound Enhances Delivery of Doxorubicin in a Preclinical Model of Pancreatic Cancer
Authors: Li Tong , Wang Yak-Nam , Khokhlova Tatiana D. , D'Andrea Samantha , Starr Frank , Chen Hong , McCune Jeannine S. , Risler Linda J. , Mashadi-Hossein Afshin , Hingorani Sunil R. , Chang Amy , Hwang Joo Ha
Published: March 2023

Supplementary Figure S2. Scatter plot of log-transformed normalized Dox concentration (the outcome) versus cavitation persistence.
Supplementary Figure S1 from Pulsed High-Intensity Focused Ultrasound Enhances Delivery of Doxorubicin in a Preclinical Model of Pancreatic Cancer
Authors: Li Tong , Wang Yak-Nam , Khokhlova Tatiana D. , D'Andrea Samantha , Starr Frank , Chen Hong , McCune Jeannine S. , Risler Linda J. , Mashadi-Hossein Afshin , Hingorani Sunil R. , Chang Amy , Hwang Joo Ha
Published: March 2023

Supplementary Figure S1. A multispectral image of an in vivo murine subcutaneous pancreatic tumor treated with pHIFU with varying levels of peak-rarefactional pressure.
Supplementary Information from The EGF Receptor Promotes the Malignant Potential of Glioma by Regulating Amino Acid Transport System xc(—)
Authors: Tsuchihashi Kenji , Okazaki Shogo , Ohmura Mitsuyo , Ishikawa Miyuki , Sampetrean Oltea , Onishi Nobuyuki , Wakimoto Hiroaki , Yoshikawa Momoko , Seishima Ryo , Iwasaki Yoshimi , Morikawa Takayuki , Abe Shinya , Takao Ayumi , Shimizu Misato , Masuko Takashi , Nagane Motoo , Furnari Frank B. , Akiyama Tetsu , Suematsu Makoto , Baba Eishi , Akashi Koichi , Saya Hideyuki , Nagano Osamu
Published: March 2023

Supplementary Table S1, Supplementary legends for Figures S1-S3, Supplementary Methods and References
Supplemental Table S7 A. from The Distinctive Mutational Spectra of Polyomavirus-Negative Merkel Cell Carcinoma
Authors: Harms Paul William , Vats Pankaj , Verhaegen Monique Elise , Robinson Dan R. , Wu Yi-Mi , Dhanasekaran Saravana Mohan , Palanisamy Nallasivam , Siddiqui Javed , Cao Xuhong , Su Fengyun , Wang Rui , Xiao Hong , Kunju Lakshmi P. , Mehra Rohit , Tomlins Scott A. , Fullen Douglas Randall , Bichakjian Christopher Keram , Johnson Timothy M. , Dlugosz Andrzej Antoni , Chinnaiyan Arul M.
Published: March 2023

Supplemental Table S7 A. Selected somatic mutation calls and Sanger validation results
Supplemental Figure S3 from The Distinctive Mutational Spectra of Polyomavirus-Negative Merkel Cell Carcinoma
Authors: Harms Paul William , Vats Pankaj , Verhaegen Monique Elise , Robinson Dan R. , Wu Yi-Mi , Dhanasekaran Saravana Mohan , Palanisamy Nallasivam , Siddiqui Javed , Cao Xuhong , Su Fengyun , Wang Rui , Xiao Hong , Kunju Lakshmi P. , Mehra Rohit , Tomlins Scott A. , Fullen Douglas Randall , Bichakjian Christopher Keram , Johnson Timothy M. , Dlugosz Andrzej Antoni , Chinnaiyan Arul M.
Published: March 2023

Supplemental Figure S3. Supplemental Figure S3 HRAS and PRUNE2 mutations in MCC
Supplementary Tables S1-S4 from Chemotherapy Induces Programmed Cell Death-Ligand 1 Overexpression via the Nuclear Factor-κB to Foster an Immunosuppressive Tumor Microenvironment in Ovarian Cancer
Authors: Peng Jin , Hamanishi Junzo , Matsumura Noriomi , Abiko Kaoru , Murat Kumuruz , Baba Tsukasa , Yamaguchi Ken , Horikawa Naoki , Hosoe Yuko , Murphy Susan K. , Konishi Ikuo , Mandai Masaki
Published: March 2023

Pathway analyses identified the top 100 upregulated pathways related to immune response following administration of chemotherapy to clinical primary ovarian cancer samples from the microarray dataset GSE15622 (S1); Clinicopathological features of 21 ovarian cancer patients before and after chemotherapy at Kyoto University (S2); The intensity of the staining scores of NF-κB p65 or PD-L1 was detected and analyzed by immunohistochemistry using anti-NF-κB p65 or anti-PD-L1 antibodies (S3); The numbers of cells positive for CD8, CD4, or Gr-1 were determined by immunohistochemistry using anti-CD8, anti-CD4, or anti-Gr-1antibodies; original magnification 200x (S4).
Supplemental Figure 3 from Tumor Radiosensitization by Monomethyl Auristatin E: Mechanism of Action and Targeted Delivery
Authors: Buckel Lisa , Savariar Elamprakash N. , Crisp Jessica L. , Jones Karra A. , Hicks Angel M. , Scanderbeg Daniel J. , Nguyen Quyen T. , Sicklick Jason K. , Lowy Andrew M. , Tsien Roger Y. , Advani Sunil J.
Published: March 2023

HCT-116 tumor xenografts have b3 integrin expression.
Supplementary figure 1 from Ceacam1L Modulates STAT3 Signaling to Control the Proliferation of Glioblastoma-Initiating Cells
Authors: Kaneko Sadahiro , Nakatani Yuka , Takezaki Tatsuya , Hide Takuichiro , Yamashita Daisuke , Ohtsu Naoki , Ohnishi Takanori , Terasaka Shunsuke , Houkin Kiyohiro , Kondo Toru
Published: March 2023

Supplementary figure 1. Expression of ceacam1 in mouse and human GIC lines and human glioma tissues
Supplementary Table S4 from Identification of P450 Oxidoreductase as a Major Determinant of Sensitivity to Hypoxia-Activated Prodrugs
Authors: Hunter Francis W. , Young Richard J. , Shalev Zvi , Vellanki Ravi N. , Wang Jingli , Gu Yongchuan , Joshi Naveen , Sreebhavan Sreevalsan , Weinreb Ilan , Goldstein David P. , Moffat Jason , Ketela Troy , Brown Kevin R. , Koritzinsky Marianne , Solomon Benjamin , Rischin Danny , Wilson William R. , Wouters Bradly G.
Published: March 2023

List of shRNAs on the custom reductase library.
Supplemental Figure 3 from Spatially Resolved Metabolic Phenotyping of Breast Cancer by Desorption Electrospray Ionization Mass Spectrometry
Authors: Guenther Sabine , Muirhead Laura J. , Speller Abigail V.M. , Golf Ottmar , Strittmatter Nicole , Ramakrishnan Rathi , Goldin Robert D. , Jones Emrys , Veselkov Kirill , Nicholson Jeremy , Darzi Ara , Takats Zoltan
Published: March 2023

Supplemental Figure 3. Distribution of FA(20:2) in a) normal glandular tissue, b) grade 2 tumor with positive HR status and c) grade 3 tumor with negative HR status.
Supplemental Table S3 from Evolutionary Action Score of TP53 Identifies High-Risk Mutations Associated with Decreased Survival and Increased Distant Metastases in Head and Neck Cancer
Authors: Neskey David M. , Osman Abdullah A. , Ow Thomas J. , Katsonis Panagiotis , McDonald Thomas , Hicks Stephanie C. , Hsu Teng-Kuei , Pickering Curtis R. , Ward Alexandra , Patel Ameeta , Yordy John S. , Skinner Heath D. , Giri Uma , Sano Daisuke , Story Michael D. , Beadle Beth M. , El-Naggar Adel K. , Kies Merrill S. , William William N. , Caulin Carlos , Frederick Mitchell , Kimmel Marek , Myers Jeffrey N. , Lichtarge Olivier
Published: March 2023

Supplemental Table S3. TP53 status scored and stratified by EAp53 in the validation dataset with associated demographic, pathologic, and recurrence data.
Supplemental Figure S1 from Carbonic Anhydrase IX Promotes Myeloid-Derived Suppressor Cell Mobilization and Establishment of a Metastatic Niche by Stimulating G-CSF Production
Authors: Chafe Shawn C. , Lou Yuanmei , Sceneay Jaclyn , Vallejo Marylou , Hamilton Melisa J. , McDonald Paul C. , Bennewith Kevin L. , Möller Andreas , Dedhar Shoukat
Published: March 2023

Conditioned media antibody array and ELISA analyses.
Supplementary Figure Legends from Nitric Oxide Mediates Metabolic Coupling of Omentum-Derived Adipose Stroma to Ovarian and Endometrial Cancer Cells
Authors: Salimian Rizi Bahar , Caneba Christine , Nowicka Aleksandra , Nabiyar Ahmad W. , Liu Xinran , Chen Kevin , Klopp Ann , Nagrath Deepak
Published: March 2023

Supplementary Figure Legends. Legend for Supplementary Figures S1-S5.
Supplementary Figure S1 from Checkpoint Kinase 2 Negatively Regulates Androgen Sensitivity and Prostate Cancer Cell Growth
Authors: Ta Huy Q. , Ivey Melissa L. , Frierson Henry F. , Conaway Mark R. , Dziegielewski Jaroslaw , Larner James M. , Gioeli Daniel
Published: March 2023

Primer Sequences.
Supplemental data from miR30a Inhibits LOX Expression and Anaplastic Thyroid Cancer Progression
Authors: Boufraqech Myriem , Nilubol Naris , Zhang Lisa , Gara Sudheer Kumar , Sadowski Samira M. , Mehta Amit , He Mei , Davis Sean , Dreiling Jennifer , Copland John A. , Smallridge Robert C. , Quezado Martha M. , Kebebew Electron
Published: March 2023

Legends for supplemental figures
Supplemental Figure 3 from miR30a Inhibits LOX Expression and Anaplastic Thyroid Cancer Progression
Authors: Boufraqech Myriem , Nilubol Naris , Zhang Lisa , Gara Sudheer Kumar , Sadowski Samira M. , Mehta Amit , He Mei , Davis Sean , Dreiling Jennifer , Copland John A. , Smallridge Robert C. , Quezado Martha M. , Kebebew Electron
Published: March 2023

Supplemental Figure 3. Effect of LOX inhibition on metastasis in vivo. Treatment of mice before and after tail vein injection with 8505c cells reduced metastasis in vivo. BAPN treatment was initiated either 24 hours before (upper panel, four mice) or after (lower panel, four mice) tail vein injection. On the left are representative tumor luminescence images of untreated and BAPN-treated mice. B, Representative images of cellular migration and invasion in ATC cell lines transfected with siLOX.
Supplemental Figure 2 from miR30a Inhibits LOX Expression and Anaplastic Thyroid Cancer Progression
Authors: Boufraqech Myriem , Nilubol Naris , Zhang Lisa , Gara Sudheer Kumar , Sadowski Samira M. , Mehta Amit , He Mei , Davis Sean , Dreiling Jennifer , Copland John A. , Smallridge Robert C. , Quezado Martha M. , Kebebew Electron
Published: March 2023

Supplemental Figure 2. Images for each cell line shows cells that penetrated the Matrigel (invasion) and those that penetrated the insert's membrane (migration). 72 hours after transfection with miR-30a (A). LOX inhibition reduces cellular migration and invasion in ATC cell lines. Transwell migration and invasion assays were performed after 24 hours of treatment with and without 100 µM BAPN (B).
Supplemental Table S1 from miR-339-3p Is a Tumor Suppressor in Melanoma
Authors: Weber Claudia E.M. , Luo Chonglin , Hotz-Wagenblatt Agnes , Gardyan Adriane , Kordaß Theresa , Holland-Letz Tim , Osen Wolfram , Eichmüller Stefan B.
Published: March 2023

Characterization of melanoma cell lines.
Supplementary Table 7 from Identification of a Functional SNP in the 3′UTR of CXCR2 That Is Associated with Reduced Risk of Lung Cancer
Authors: Ryan Bríd M. , Robles Ana I. , McClary Andrew C. , Haznadar Majda , Bowman Elise D. , Pine Sharon R. , Brown Derek , Khan Mohammed , Shiraishi Kouya , Kohno Takashi , Okayama Hirokazu , Modali Ramakrishna , Yokota Jun , Harris Curtis C.
Published: March 2023

Effect modification between IL-8 and rs1126579.
Supplementary Table 6 from Identification of a Functional SNP in the 3′UTR of CXCR2 That Is Associated with Reduced Risk of Lung Cancer
Authors: Ryan Bríd M. , Robles Ana I. , McClary Andrew C. , Haznadar Majda , Bowman Elise D. , Pine Sharon R. , Brown Derek , Khan Mohammed , Shiraishi Kouya , Kohno Takashi , Okayama Hirokazu , Modali Ramakrishna , Yokota Jun , Harris Curtis C.
Published: March 2023

Relationship between rs1126579 and lung cancer survival.
Supplementary Table S2 from Lysophosphatidic Acid Receptor LPAR6 Supports the Tumorigenicity of Hepatocellular Carcinoma
Authors: Mazzocca Antonio , Dituri Francesco , De Santis Flavia , Filannino Addolorata , Lopane Chiara , Betz Regina C. , Li Ying-Yi , Mukaida Naofumi , Winter Peter , Tortorella Cosimo , Giannelli Gianluigi , Sabbà Carlo
Published: March 2023

List of genes down-regulated in LPAR6 knocked down cells.
Supplementary Figure 3 from Identification of a Functional SNP in the 3′UTR of CXCR2 That Is Associated with Reduced Risk of Lung Cancer
Authors: Ryan Bríd M. , Robles Ana I. , McClary Andrew C. , Haznadar Majda , Bowman Elise D. , Pine Sharon R. , Brown Derek , Khan Mohammed , Shiraishi Kouya , Kohno Takashi , Okayama Hirokazu , Modali Ramakrishna , Yokota Jun , Harris Curtis C.
Published: March 2023

CXCR2 isoform expression in human lung adenocarcinoma and squamous cell carcinoma tissue.
Supplementary Figure 1 from Identification of a Functional SNP in the 3′UTR of CXCR2 That Is Associated with Reduced Risk of Lung Cancer
Authors: Ryan Bríd M. , Robles Ana I. , McClary Andrew C. , Haznadar Majda , Bowman Elise D. , Pine Sharon R. , Brown Derek , Khan Mohammed , Shiraishi Kouya , Kohno Takashi , Okayama Hirokazu , Modali Ramakrishna , Yokota Jun , Harris Curtis C.
Published: March 2023

Predicted modulation of miR-138-1* binding to CXCR2 mRNA by rs1126579.
Supplementary Figure S1 from Histone Deacetylase Inhibitors Repress Tumoral Expression of the Proinvasive Factor RUNX2
Authors: Sancisi Valentina , Gandolfi Greta , Ambrosetti Davide Carlo , Ciarrocchi Alessia
Published: March 2023

Supplementary Figure S1. Additional luciferase data and bioinformatic analysis on RUNX2 3'UTR and ENH3.
Supplementary Figure Legend from Histone Deacetylase Inhibitors Repress Tumoral Expression of the Proinvasive Factor RUNX2
Authors: Sancisi Valentina , Gandolfi Greta , Ambrosetti Davide Carlo , Ciarrocchi Alessia
Published: March 2023

Supplementary Figure Legend. Legend for Supplementary Figure S1.