bluuebunny/crossref_metadata_2025 huggingface dataset:
Leishmania 360°: Guidelines for Exosomal Research
Authors: Gabriel Áurea Martins , Galué-Parra Adan , Pereira Washington Luiz Assunção , Pedersen Ketil Winther , da Silva Edilene Oliveira
Published: October 2021

Leishmania parasites are a group of kinetoplastid pathogens that cause a variety of clinical disorders while maintaining cell communication by secreting extracellular vesicles. Emerging technologies have been adapted for the study of Leishmania-host cell interactions, to enable the broad-scale analysis of the extracellular vesicles of this parasite. Leishmania extracellular vesicles (LEVs) are spheroidal nanoparticles of polydispersed suspensions surrounded by a layer of lipid membrane. Although LEVs have attracted increasing attention from researchers, many aspects of their biology remain unclear, including their bioavailability and function in the complex molecular mechanisms of pathogenesis. Given the importance of LEVs in the parasite-host interaction, and in the parasite-parasite relationships that have emerged during the evolutionary history of these organisms, the present review provides an overview of the available data on Leishmania, and formulates guidelines for LEV research. We conclude by reporting direct methods for the isolation of specific LEVs from the culture supernatant of the promastigotes and amastigotes that are suitable for a range of different downstream applications, which increases the compatibility and reproducibility of the approach for the establishment of optimal and comparable isolation conditions and the complete characterization of the LEV, as well as the critical immunomodulatory events triggered by this important group of parasites.
Mycobacterium microti at the Environment and Wildlife Interface
Authors: Tagliapietra Valentina , Boniotti Maria Beatrice , Mangeli Anna , Karaman Iyad , Alborali Giovanni , Chiari Mario , D’Incau Mario , Zanoni Mariagrazia , Rizzoli Annapaola , Pacciarini Maria Lodovica
Published: October 2021

An unexpected high presence of Mycobacterium microti in wild boar in Northern Italy (Garda Lake) has been reported since 2003, but the factors contributing to the maintenance of this pathogen are still unclear. In this study, we investigated the presence of M. microti in wild rodents and in water and soil samples collected at wild boar aggregation areas, such as watering holes, with the aim of clarifying their role in M. microti transmission. In total, 8 out of 120 captured animals tested positive for the Mycobacterium tuberculosis complex (MTBC) as assessed by real-time PCR, and six samples were confirmed to be M. microti. A strain with a genetic profile similar to those previously isolated in wild boars in the same area was isolated from one sample. Of the 20 water and 19 mud samples, 3 and 1, respectively, tested positive for the presence of MTBC, and spacer oligotype SB0118 (vole type) was detected in one sample. Our study suggests that wild rodents, in particular Apodemus sylvaticus, Microtus sp. and Apodemus flavicollis, play roles in the maintenance of M. microti infections in wild boar through ingestion or by contact with either infected excreta or a contaminated environment, such as at animal aggregation sites.
Alleviative Effects of Exopolysaccharide Produced by Lactobacillus helveticus KLDS1.8701 on Dextran Sulfate Sodium-Induced Colitis in Mice
Authors: Liu Yin , Zheng Shujuan , Cui Jiale , Guo Tingting , Zhang Jingtao , Li Bailiang
Published: October 2021

Ulcerative colitis (UC) is a non-specific chronic inflammatory disease with lesions located in the colon and rectum. The aim of this study was to evaluate the anti-inflammatory effects of exopolysaccharide-1 (EPS-1) isolated by L. helveticus KLDS1.8701 on UC. The anti-inflammatory effects of EPS-1 were studied using dextran sulphate sodium (DSS)-induced UC model. In vivo results showed that EPS-1 administration significantly ameliorated weight loss, colon shortening, disease activity index (DAI) score, myeloperoxidase (MPO) activity, and colon tissue damage. In addition, EPS-1 administration significantly decreased the levels of pro-inflammatory cytokines and increased levels of anti-inflammatory cytokines. Meanwhile, EPS-1 administration significantly up-regulated the expression of tight junction proteins and mucin. Furthermore, EPS-1 administration modulated gut microbiota composition caused by DSS and increased the short-chain fatty acids (SCFAs) levels. Collectively, our study showed the alleviative effects of EPS- isolated by L. helveticus KLDS1.8701 on DSS-induced UC via alleviating intestinal inflammation, improving mucosal barrier function, and modulating gut microbiota composition.
Voriconazole Pharmacokinetics Are Not Altered in Critically Ill Patients with Acute-on-Chronic Liver Failure and Continuous Renal Replacement Therapy: An Observational Study
Authors: Grensemann Jörn , Pfaffendorf Christoph , Wicha Sebastian G. , König Christina , Roedl Kevin , Jarczak Dominik , Iwersen-Bergmann Stefanie , Manthey Carolin , Kluge Stefan , Fuhrmann Valentin
Published: October 2021

Infection and sepsis are a main cause of acute-on-chronic liver failure (ACLF). Besides bacteria, molds play a role. Voriconazole (VRC) is recommended but its pharmacokinetics (PK) may be altered by ACLF. Because ACLF patients often suffer from concomitant acute renal failure, we studied the PK of VRC in patients receiving continuous renal replacement therapy (RRT) with ACLF and compared it to PK of VRC in critically ill patients with RRT without concomitant liver failure (NLF). In this prospective cohort study, patients received weight-based VRC. Pre- and post-dialysis membrane, and dialysate samples obtained at different time points were analyzed by high-performance liquid chromatography. An integrated dialysis pharmacometric model was used to model the available PK data. The recommended, 50% lower, and 50% higher doses were analyzed by Monte-Carlo simulation (MCS) for day 1 and at steady-state with a target trough concentration (TC) of 0.5–3mg/L. Fifteen patients were included in this study. Of these, 6 patients suffered from ACLF. A two-compartment model with linear clearance described VRC PK. No difference for central (V1) or peripheral (V2) volumes of distribution or clearance could be demonstrated between the groups. V1 was 80.6L (95% confidence interval: 62.6–104) and V2 106L (65–166) with a body clearance of 4.7L/h (2.87–7.81) and RRT clearance of 1.46L/h (1.29–1.64). MCS showed TC below/within/above target of 10/74/16% on day 1 and 9/39/52% at steady-state for the recommended dose. A 50% lower dose resulted in 26/72/1% (day 1) and 17/64/19% at steady-state and 7/57/37% and 7/27/67% for a 50% higher dose. VRC pharmacokinetics are not significantly influenced by ACLF in critically ill patients who receive RRT. Maintenance dose should be adjusted in both groups. Due to the high interindividual variability, therapeutic drug monitoring seems inevitable.
Ambient Air Pollution Shapes Bacterial and Fungal Ivy Leaf Communities
Authors: Stevens Vincent , Thijs Sofie , Bongaerts Eva , Nawrot Tim , Marchal Wouter , Van Hamme Jonathan , Vangronsveld Jaco
Published: October 2021

Ambient air pollution exerts deleterious effects on our environment. Continuously exposed to the atmosphere, diverse communities of microorganisms thrive on leaf surfaces, the phylloplane. The composition of these communities is dynamic, responding to many environmental factors including ambient air pollution. In this field study, over a 2 year period, we sampled Hedera helix (ivy) leaves at six locations exposed to different ambient air pollution conditions. Daily, we monitored ambient black carbon (BC), PM2.5, PM10, nitrogen dioxide, and ozone concentrations and found that ambient air pollution led to a 2–7-fold BC increase on leaves, the phylloplane BC load. Our results further indicated that the phylloplane BC load correlates with the diversity of bacterial and fungal leaf communities, impacting diversity more than seasonal effects. The bacterial genera Novosphingobium, Hymenobacter, and Methylorubrum, and the fungal genus Ampelomyces were indicators for communities exposed to the highest phylloplane BC load. Parallel to this, we present one fungal and two bacterial phylloplane strains isolated from an air-polluted environment able to degrade benzene, toluene, and/or xylene, including a genomics-based description of the degradation pathways involved. The findings of this study suggest that ambient air pollution shapes microbial leaf communities, by affecting diversity and supporting members able to degrade airborne pollutants.
Complementary Food Ingredients Alter Infant Gut Microbiome Composition and Metabolism In Vitro
Authors: Parkar Shanthi G. , Rosendale Doug I. , Stoklosinski Halina M. , Jobsis Carel M. H. , Hedderley Duncan I. , Gopal Pramod
Published: October 2021

We examined the prebiotic potential of 32 food ingredients on the developing infant microbiome using an in vitro gastroileal digestion and colonic fermentation model. There were significant changes in the concentrations of short-chain fatty-acid metabolites, confirming the potential of the tested ingredients to stimulate bacterial metabolism. The 16S rRNA gene sequencing for a subset of the ingredients revealed significant increases in the relative abundances of the lactate- and acetate-producing Bifidobacteriaceae, Enterococcaceae, and Lactobacillaceae, and lactate- and acetate-utilizing Prevotellaceae, Lachnospiraceae, and Veillonellaceae. Selective changes in specific bacterial groups were observed. Infant whole-milk powder and an oat flour enhanced Bifidobacteriaceae and lactic acid bacteria. A New Zealand-origin spinach powder enhanced Prevotellaceae and Lachnospiraceae, while fruit and vegetable powders increased a mixed consortium of beneficial gut microbiota. All food ingredients demonstrated a consistent decrease in Clostridium perfringens, with this organism being increased in the carbohydrate-free water control. While further studies are required, this study demonstrates that the selected food ingredients can modulate the infant gut microbiome composition and metabolism in vitro. This approach provides an opportunity to design nutrient-rich complementary foods that fulfil infants’ growth needs and support the maturation of the infant gut microbiome.
Case-Control Study to Assess the Association between Epilepsy and Toxocara Infection/Exposure
Authors: Alizadeh Khatir Ali , Sepidarkish Mahdi , Rajabalizadeh Mohammad Reza , Alizadeh Moghaddam Solmaz , Aghapour Saeed , Mehravar Saeed , Hotez Peter J. , Gasser Robin B. , Rostami Ali
Published: October 2021

Although causes and etiology of epilepsy are mostly obscure, some zoonotic parasites, such as Toxocara species, have been proposed as a risk factor for this disease. Here, we conducted an age-matched case-control study to evaluate whether there is an association between epilepsy and the presence of serum antibodies to Toxocara in incident cases. We included 94 idiopathic epileptic patients as cases, and—from the same geographical region—88 people with no own history of epilepsy or neurological disease as control subjects. Epilepsy was confirmed by a physician using the International League Against Epilepsy (ILAE) definition. All participants were screened for the anti-Toxocara IgG serum antibody by enzyme-linked immunosorbent assay (ELISA). Univariate and mutltivariate statistical analyses were applied to calculate the crude and adjusted odds ratios (OR) and 95% confidence intervals (CIs). Anti-Toxocara serum antibody was detected in 37 epileptic patients and in 23 control subjects, giving respective seroprevalences of 39.3% (95% CI, 29.4–49.9%) and 26.1% (95% CI, 17.3–36.5%), respectively. Adjusted multivariate logistic regression analysis estimated an OR of 2.38 (95% CI, 1.25–4.63), indicating a significant association between epilepsy and Toxocara seropositivity. There was also a significant association between seropositivity to Toxocara and partial (OR, 2.60; 95% CI, 1.14–6.04) or generalized (OR, 2.17; 95% CI, 1.09–4.40%) seizures. Findings from the present study of incident epileptic cases support previous studies proposing that Toxocara infection/exposure is a risk factor for epilepsy. However, further well-designed population-based surveys and mechanistic/experimental studies in animal models are required to better understand the reason(s) for this association.
Virucidal Effect of the Mesoscopic Structure of CAC-717 on Severe Acute Respiratory Syndrome Coronavirus-2
Authors: Yokoyama Takashi , Nishimura Tomoyasu , Uwamino Yoshifumi , Kosaki Kenjiro , Furusaki Koichi , Onishi Rumiko , Onodera Takashi , Haritani Makoto , Sugiura Katsuaki , Kirisawa Rikio , Hasegawa Naoki
Published: October 2021

Here, the virucidal effect of calcium bicarbonate with a mesoscopic structure (CAC-717) on severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2) was determined. Assays showed that CAC-717 had a strong virucidal effect on all examined SARS-CoV-2 isolates, including variant strains. The viral infectivity decreased within 15 s, and the virucidal activity of CAC-717 at a 1:49 ratio was similar to that of ethanol disinfectant. CAC-717 neutralization eliminated this virucidal effect, indicating that the alkaline condition of CAC-717 is important for virus inactivation and is an indicator of its mesoscopic structure and virucidal activity. The virucidal effect was observed in the presence of organic matter (bovine serum albumin). CAC-717 is a non-invasive and non-flammable substance with a low environmental burden, and its usefulness as a novel disinfectant has been confirmed.
Molecular Identification of Pathogenic Free-Living Amoeba from Household Biofilm Samples in Iran: A Risk Factor for Acanthamoeba Keratitis
Authors: Norouzi Maryam , Saberi Reza , Niyyati Maryam , Lorenzo-Morales Jacob , Mirjalali Hamed , Fatemi Marziye , Javanmard Ehsan , Karamati Seyed Ahmad
Published: October 2021

Free-living amoeba (FLA) are ubiquitously distributed in the environment. However, they are also the causative agents of opportunistic infections in humans and other animals. A biofilm comprises any syntrophic consortium of microorganisms in which cells stick to each other and often also to a surface. Moreover, FLA have been detected in various biofilms around the world. Therefore, the present study aimed to check for presence of FLA in samples from household biofilms in Iran and to characterize them at the molecular level. A total of 69 biofilm samples collected from showerheads, kitchen areas, and bathroom sinks were analyzed. Positive samples for FLA were characterized at the morphological and molecular levels. Furthermore, the results of morphology analysis indicated that 26.08% (18/69) of biofilm samples were positive for Acanthamoeba spp., Vermamoeba genus, and Vahlkampfiids. According to sequence analysis, five strains of Acanthamoeba isolates related to the T4 genotype and two strains belonged to the T2 genotype. In addition, the pathogenic potential of Acanthamoeba-positive isolates was conducted using the tolerance ability test. The results of BLASTn of Vermamoeba sequences were similar to what was expected for Vermamoeba vermiformis. The above-mentioned reasons revealed that the relative high contamination of household biofilm samples with FLA may pose a risk for people using soft contact lenses and for patients with traumatic cataract. Our finding proposes that filtration should be performed in shower heads and indicates the need to monitor people at increased risk of Acanthamoeba keratitis.
Characterization of a New and Efficient Polyvalent Phage Infecting E. coli O157:H7, Salmonella spp., and Shigella sonnei
Authors: Kim Su-Hyeon , Adeyemi Damilare Emmanuel , Park Mi-Kyung
Published: October 2021

Ongoing outbreaks of foodborne diseases remain a significant public health concern. Lytic phages provide promising attributes as biocontrol agents. This study characterized KFS-EC3, a polyvalent and lytic phage, which was isolated from slaughterhouse sewage and purified by cesium chloride density centrifugation. Host range and efficiency of plating analyses revealed that KFS-EC3 is polyvalent and can efficiently infect E. coli O157:H7, Salmonella spp., and Shigella sonnei. KFS-EC3 had a latent time of 20 min and burst size of ~71 phages/infected cell. KFS-EC3 was stable and infectious following storage at a pH range of 3 to 11 and a temperature range of −70 °C to 60 °C. KFS-EC3 could inhibit E. coli O157:H7 growth by 2 logs up to 52 h even at the lowest MOI of 0.001. Genomic analysis of KFS-EC3 revealed that it consisted of 167,440 bp and 273 ORFs identified as functional genes, without any genes associated with antibiotic resistance, virulence, allergenicity, and lysogenicity. This phage was finally classified into the Tequatrovirus genus of the Myoviridae family. In conclusion, KFS-EC3 could simultaneously infect E. coli O157:H7, S. sonnei, and Salmonella spp. with the lowest MOI values over long periods, suggesting its suitability for simultaneous pathogen control in foods.
Characterization and Antimicrobial Resistance of Environmental and Clinical Aeromonas Species Isolated from Fresh Water Ornamental Fish and Associated Farming Environment in Sri Lanka
Authors: Dhanapala Pavithra M. , Kalupahana Ruwani S. , Kalupahana Anil W. , Wijesekera D.P.H. , Kottawatta Sanda A. , Jayasekera Niromi K. , Silva-Fletcher Ayona , Jagoda S.S.S. de S.
Published: October 2021

The aims of this study were to characterize and investigate antimicrobial susceptibility and presence of integrons in 161 Aeromonas spp. isolated from ornamental freshwater fish farming environment, apparently healthy and diseased fish. Phylogenetic analyses of the gyrB gene sequences identified Aeromonas veronii as the most abundant species (75.8%) followed by Aeromonashydrophila (9.3%), Aeromonas caviae (5%), Aeromonas jandaei (4.3%), Aeromonas dhakensis (3.7%), Aeromonas sobria (0.6%), Aeromonas media (0.6%), and Aeromonas popoffii (0.6%). Susceptibility to thirteen antimicrobials was determined and antimicrobial resistance frequencies were: amoxicillin (92.5%), enrofloxacin (67.1%), nalidixic acid (63.4%), erythromycin (26.1%), tetracycline (23.6%), imipenem (18%), trimethoprim-sulfamethoxazole (16.8%), and gentamicin (16.8%). Multi-drug resistance (MDR) was widespread among the isolates (51.6%, 83/161) with 51.6% (63/122) A. veronii isolates being MDR. In addition, 68.3% of isolates had multiple antibiotic resistance (MAR) indexes higher than 0.2, suggesting that they originated from a high-risk source of contamination where antimicrobials are often used. In all, 21.7% isolates carried class 1 integrons, with 97.1% having gene cassettes, while there were 12 isolates carrying class 2 integron gene cassettes. Our findings highlight that the aquatic environment and ornamental fish act as reservoirs of multidrug resistant Aeromonas spp. and underline the need for a judicious use of antimicrobials and timely surveillance of antimicrobial resistance (AMR) in aquaculture.
Current Knowledge of the Mode of Action and Immunity Mechanisms of LAB-Bacteriocins
Authors: Pérez-Ramos Adrián , Madi-Moussa Désiré , Coucheney Françoise , Drider Djamel
Published: October 2021

Bacteriocins produced by lactic acid bacteria (LAB-bacteriocins) may serve as alternatives for aging antibiotics. LAB-bacteriocins can be used alone, or in some cases as potentiating agents to treat bacterial infections. This approach could meet the different calls and politics, which aim to reduce the use of traditional antibiotics and develop novel therapeutic options. Considering the clinical applications of LAB-bacteriocins as a reasonable and desirable therapeutic approach, it is therefore important to assess the advances achieved in understanding their modes of action, and the resistance mechanisms developed by the producing bacteria to their own bacteriocins. Most LAB-bacteriocins act by disturbing the cytoplasmic membrane through forming pores, or by cell wall degradation. Nevertheless, some of these peptides still have unknown modes of action, especially those that are active against Gram-negative bacteria. Regarding immunity, most bacteriocin-producing strains have an immunity mechanism involving an immunity protein and a dedicated ABC transporter system. However, these immunity mechanisms vary from one bacteriocin to another.
The Influence of Artificial Fusarium Infection on Oat Grain Quality
Authors: Havrlentová Michaela , Šliková Svetlana , Gregusová Veronika , Kovácsová Bernadett , Lančaričová Andrea , Nemeček Peter , Hendrichová Jana , Hozlár Peter
Published: October 2021

Adverse environmental conditions, such as various biotic and abiotic stresses, are the primary reason for decreased crop productivity. Oat, as one of the world’s major crops, is an important cereal in human nutrition. The aim of this work was to analyze the effect of inoculation with two species of the genus Fusarium on the selected qualitative parameters of oat grain intended for the food industry. Artificial inoculation caused a statistically significant decrease in the content of starch, oleic, linoleic, and α-linolenic acids in oat grains compared to the control. Moreover, artificial inoculation had no statistically significant effect on the content of β-D-glucans, total dietary fiber, total lipids, palmitic, stearic, and cis-vaccenic acids. An increase in the content of polyunsaturated fatty acids in oat grains was observed after inoculation. The most important indicator of Fusarium infection was the presence of the mycotoxin deoxynivalenol in the grain. The content of β-D-glucans, as a possible protective barrier in the cell wall, did not have a statistically significant effect on the inoculation manifestation in the grain.
Combining Culture-Dependent and Independent Approaches for the Optimization of Epoxiconazole and Fludioxonil-Degrading Bacterial Consortia
Authors: Alexandrino Diogo A. M. , Mucha Ana P. , Tomasino Maria Paola , Almeida C. Marisa R. , Carvalho Maria F.
Published: October 2021

Epoxiconazole (EPO) and fludioxonil (FLU) are two widely used fluorinated pesticides known to be highly persistent and with high ecotoxicological potential, turning them into pollutants of concern. This work aimed to optimize two degrading bacterial consortia, previously obtained from an agricultural soil through enrichment with EPO and FLU, by characterizing the contribution of their corresponding bacterial isolates to the biodegradation of these pesticides using both culture-dependent and independent methodologies. Results showed that a co-culture of the strains Hydrogenophaga eletricum 5AE and Methylobacillus sp. 8AE was the most efficient in biodegrading EPO, being able to defluorinate ca. 80% of this pesticide in 28 days. This catabolic performance is likely the result of a commensalistic cooperation, in which H. eletricum may be the defluorinating strain and Methylobacillus sp. may assume an accessory, yet pivotal, catabolic role. Furthermore, 16S rRNA metabarcoding analysis revealed that these strains represent a minority in their original consortium, showing that the biodegradation of EPO can be driven by less abundant phylotypes in the community. On the other hand, none of the tested combinations of bacterial strains showed potential to biodegrade FLU, indicating that the key degrading strains were not successfully isolated from the original enrichment culture. Overall, this work shows, for the first time, the direct involvement of two bacterial species, namely H. eletricum and Methylobacillus sp., in the biodegradation of EPO, while also offering insight on how they might cooperate to accomplish this process. Moreover, the importance of adequate culture-dependent approaches in the engineering of microbial consortia for bioremediation purposes is also emphasized.
Nurturing the Early Life Gut Microbiome and Immune Maturation for Long Term Health
Authors: Dogra Shaillay , Chung Cheong , Wang Dantong , Sakwinska Olga , Colombo Mottaz Sara , Sprenger Norbert
Published: October 2021

Early life is characterized by developmental milestones such as holding up the head, turning over, sitting up and walking that are typically achieved sequentially in specific time windows. Similarly, the early gut microbiome maturation can be characterized by specific temporal microorganism acquisition, colonization and selection with differential functional features over time. This orchestrated microbial sequence occurs from birth during the first years of age before the microbiome reaches an adult-like composition and function between 3 and 5 years of age. Increasingly, these different steps of microbiome development are recognized as crucial windows of opportunity for long term health, primarily linked to appropriate immune and metabolic development. For instance, microbiome disruptors such as preterm and Cesarean-section birth, malnutrition and antibiotic use are associated with increased risk to negatively affect long-term immune and metabolic health. Different age discriminant microbiome taxa and functionalities are used to describe age-appropriate microbiome development, and advanced modelling techniques enable an understanding and visualization of an optimal microbiome maturation trajectory. Specific microbiome features can be related to later health conditions, however, whether such features have a causal relationship is the topic of intense research. Early life nutrition is an important microbiome modulator, and ‘Mother Nature’ provides the model with breast milk as the sole source of nutrition for the early postnatal period, while dietary choices during the prenatal and weaning period are to a large extent guided by tradition and culture. Increasing evidence suggests prenatal maternal diet and infant and child nutrition impact the infant microbiome trajectory and immune competence development. The lack of a universal feeding reference for such phases represents a knowledge gap, but also a great opportunity to provide adequate nutritional guidance to maintain an age-appropriate microbiome for long term health. Here, we provide a narrative review and perspective on our current understanding of age-appropriate microbiome maturation, its relation to long term health and how nutrition shapes and influences this relationship.
Incidence of Tetracycline and Erythromycin Resistance in Meat-Associated Bacteria: Impact of Different Livestock Management Strategies
Authors: Fontana Cecilia , Patrone Vania , Lopez Constanza Maria , Morelli Lorenzo , Rebecchi Annalisa
Published: October 2021

The extensive use of antibiotics as growth promoters, or their continued abusive misuse to cure or prevent the onset of bacterial infections as occurs in the intensive farming, may have played a pivotal role in the spread of reservoirs of antibiotic resistance (AR) among food-associated bacteria including pathogens representing risks to human health. The present study compares the incidence of tetracycline and erythromycin resistances in lactic acid bacteria (LAB) and coagulase negative staphylococci (CNS) from fermented products manufacturing using meat from intensive animal husbandry (industrialized manufacturing Italian salami) and from extensive farms (artisanal sausages facilities pork and llama Argentinean sausages). A higher incidence of tetracycline resistance (TET-R) compared to erythromycin resistance (ERY-R) was observed among the 205 isolates. Unlike CNS strains, the LAB showed a significant correlation between the TET-R and the ERY-R phenotypes. Genotypic assessment shows a high correlation with tetK and tetM for the TET-R strains and with ermB and ermC for the ERY-R strains. Multiple correspondence analyses have highlighted the association between AR phenotypes and CNS species isolated from Italian salami, while the susceptible phenotypes were associated with the LAB species from Argentinean sausages. Since antibiotic resistance in meat-associated bacteria is a very complex phenomenon, the assessment of bacterial resistance in different environmental contexts with diverse farming practices and food production technologies will help in monitoring the factors influencing AR emergence and spread in animal production.
Provenance and Paleoenvironmental Studies of Cretaceous African and South American Kaolins: Similarities and Differences
Authors: Oyebanjo Olaonipekun , Bukalo Nenita , Ekosse Georges-Ivo
Published: October 2021

The African and South American continents are of great interest in continental drift studies. Hence, this study assesses the possible correlations in the provenance and paleoenvironment of selected Cretaceous Nigerian and Cameroonian (in Africa), and Argentine and Brazilian (in South America) kaolins through an analysis of their mineralogical and geochemical characteristics. On the basis of their mineralogical composition, the Nigerian Lakiri and Brazilian soft Capim River kaolins are predominantly characterised as pure kaolins, whereas the kaolins from Cameroon (except for Yatchika) and Argentina are mainly considered as sandy kaolins. The present study revealed that the Brazilian soft Capim River kaolin had the highest kaolinite structural order, whilst the Argentine Santa Cruz kaolin had the least. The kaolins from Nigeria, Cameroon, and Argentina were dominated by subhedral to anhedral kaolinite crystals relative to the Brazilian kaolin, which possess more euhedral kaolinite crystals. The kaolins were formed by the intense weathering of intermediate to felsic rocks under anoxic conditions, which is consistent with the structural framework of the basins. The average paleotemperatures obtained for the kaolins (except for the one from Santa Cruz) indicates that the paleoweathering took place under tropical climates.
A Statistical Evaluation to Compare and Analyze Estimations of the Diffusion Coefficient of Pertechnetate (99TcO4−) in Compacted Bentonite
Authors: Lee Chuan-Pin , Hu Yanqin , Chen Dongyang , Tien Neng-Chuan , Tsai Shih-Chin , Shi Yunfeng , Lee I-Hsien , Ni Chuen-Fa
Published: October 2021

Various numerical methods have been being extensively used to estimate the diffusion parameters of pertechnetate (99TcO4−) in compacted MX80 bentonite clay using through-diffusion (TD) techniques. In this study, an improved TD column test was applied, and the diffusion fluxes of tritium (HTO) as a non-reactive radionuclide, and 99TcO4− with various dry densities, were compared under the same experimental conditions. Similar results were obtained for the apparent diffusion coefficients of HTO and 99TcO4− using three estimation methods: a graphical method applying the asymptote calculation, an analytical solution using Lsqcurvefit installed in MATLAB, and the Marquardt–Levenberg optimization algorithm in the HYDRUS-1D inverse method. The statistical analysis showed that the densities using a one-way analysis of variance (ANOVA) for the three estimation methods ranged from 1200 to 2000 kg/m3, which indicated that there were no obvious differences between HTO and 99TcO4−. In general, the diffusion parameters of 99TcO4− were lower than those for HTO due to anion exclusion effects and lower accessible porosity.
Application of Wavelet Filtering to Vibrational Signals from the Mining Screen for Spring Condition Monitoring
Authors: Duda-Mróz Natalia , Anufriiev Sergii , Stefaniak Paweł
Published: October 2021

The main task of mineral processing plants is to further process the raw material extracted in the mining faces into a concentrate with the highest possible concentration of the final product. In practice, it is a complex process in which several stages can be distinguished. After the ore has been transported to the surface by the skip shaft, one of the first steps is sieving the ore, which is typically performed using vibrating mining screens. In a typical Ore Enrichment Plant, the screening process is carried out by several such machines. This is a typical bottleneck in the technological chain. For this reason, the main challenge for users is to achieve the highest reliability and efficiency of these technical facilities. The solution is to focus on predictive maintenance strategies based on the development of monitoring and advanced diagnostic procedures capable of estimating the time of safe operation. This work was developed as part of an advanced diagnostic system ensuring comprehensive technical conditioning and early fault detection of components such as the engine, transmission, bearings, springs, and screen. This article focuses on vibration data. The problem of damage detection in the presence of periodically impulsive components resulting from falling feed material on the screen and its further screening process has been considered. These disturbances are of a non-Gaussian noise nature, the elimination of which is essential to extract the fault-related signal of interest. One solution may be to properly smooth and filter the raw signal. In this article, a wavelet filtering technique is applied. First, the wavelet filtering procedure is described. In the next step, the performance of a wavelet filter is investigated depending on its parameters. Then, the results of wavelet filtering are compared with such methods as low-pass filtering and smoothing using a moving average. Finally, the impact of wavelet filtering on the calculation of screen trajectories is investigated.
Influence of Microbubble on Fine Wolframite Flotation
Authors: Wei Penggang , Ren Liuyi , Zhang Yimin , Bao Shenxu
Published: October 2021

The recovery of fine wolframite is low when using traditional flotation that does not use a microbubble. In this study, a microbubble was introduced into the fine wolframite flotation system; −20 μm wolframite was used as an experiment sample and octyl hydroxamic acid as the collector. The recovery of microbubble flotation reached 84.07%, which is about 12.04% higher than that of traditional flotation. A single-factor flotation experiment, high-speed camera analysis, and SEM (Scanning Electron Microscopy) analysis were used to study the influence of microbubbles on the flotation of fine wolframite. The results show that fine wolframite will more easily agglomerate under the action of microbubbles. The octyl hydroxamic acid adsorbed on the surface of wolframite treated with microbubbles is denser and more abundant.
Molecular Dynamics Study on the Leaching of Zinc-Bearing Dust Sludge by Choline Chloride-Malonic Acid
Authors: Zhang Jinxia , Yang Chao , Niu Fusheng , Gao Shuling , Dong Jiajing
Published: October 2021

Molecular dynamics of the interaction between four metal oxides (ZnO, Fe2O3, Al2O3, and CaO) present in zinc-bearing dust sludge and choline chloride (ChCl)-malonic acid (MA)(1:2) was studied in this work using Materials Studio software. The interaction mechanism was revealed by analyzing the interaction energy and radial distribution function from the perspective of quantum mechanics, and the simulation results were verified by single factor leaching experiments. The calculation results show that the complete cleavage surface of the four metal oxides is the (001) surface, and ChCl-2MA forms a stable structure with multiple intermolecular hydrogen bonds centered on the chlorine atom. The dynamic simulation of the interaction model shows that strength of interaction between ChCl-2MA and the four metal oxides follows the order: ZnO > Fe2O3 > Al2O3 > CaO. ChCl-2MA mainly interacts with ZnO by chemical adsorption, while ChCl-2MA mainly interacts with Fe2O3, Al2O3, and CaO by physical adsorption. The radial distribution function shows that Cl in ChCl-2MA and C=O in MA form chemical bonds with Zn in ZnO, and the choline cation (Ch+) forms C-H···O with ZnO. Among these bonds, the Cl-Zn bond energy is stronger. During the interaction between ChCl-2MA and Fe2O3 and Al2O3, O-H···O and C-H···O are formed and interact with CaO by van der Waals force. Single factor leaching experiments show that, under the same leaching conditions, the leaching rate of ZnO by ChCl-2MA is greater than 90%, while the leaching rate of Fe2O3, Al2O3, and CaO is about 10%. These results indicate good selectivity of ChCl-2MA for ZnO in the zinc-bearing dust sludge. The above conclusions have important theoretical significance and provide an in-depth understanding of the leaching mechanisms of zinc-bearing dust sludge in deep eutectic solvents.
In Situ Measurements of the Hydration Behavior of Compacted Milos (SD80) Bentonite by Wet-Cell X-ray Diffraction in an Opalinus Clay Pore Water and a Diluted Cap Rock Brine
Authors: Manzel Tobias , Podlech Carolin , Grathoff Georg , Kaufhold Stephan , Warr Laurence N.
Published: October 2021

Compacted bentonite is currently being considered as a suitable backfill material for sealing underground repositories for radioactive waste as part of a multi-barrier concept. Although showing favorable properties for this purpose (swelling capability, low permeability, and high adsorption capacity), the best choice of material remains unclear. The goal of this study was to examine and compare the hydration behavior of a Milos (Greek) Ca-bentonite sample (SD80) in two types of simulated ground water: (i) Opalinus clay pore water, and (ii) a diluted saline cap rock brine using a confined volume, flow-through reaction cell adapted for in situ monitoring by X-ray diffraction. Based on wet-cell X-ray diffractometry (XRD) and calculations with the software CALCMIX of the smectite d(001) reflection, it was possible to quantify the abundance of water layers (WL) in the interlayer spaces and the amount of non-interlayer water uptake during hydration using the two types of solutions. This was done by varying WL distributions to fit the CALCMIX-simulated XRD model to the observed data. Hydrating SD80 bentonite with Opalinus clay pore water resulted in the formation of a dominant mixture of 3- and 4-WLs. The preservation of ca. 10% 1-WLs and the apparent disappearance of 2-WLs in this hydrated sample are attributed to small quantities of interlayer K (ca. 8% of exchangeable cations). The SD80 bentonite of equivalent packing density that was hydrated in diluted cap rock brine also contained ca. 15% 1-WLs, associated with a slightly higher concentration of interlayer K. However, this sample showed notable suppression of WL thickness with 2- and 3-WLs dominating in the steady-state condition. This effect is to be expected for the higher salt content of the brine but the observed generation of CO2 gas in this experiment, derived from enhanced dissolution of calcite, may have contributed to the suppression of WL thickness. Based on a comparison with all published wet-cell bentonite hydration experiments, the ratio of packing density to the total layer charge of smectite is suggested as a useful proxy for predicting the relative amounts of interlayer and non-interlayer water incorporated during hydration. Such information is important for assessing the subsequent rates of chemical transport through the bentonite barrier.
Geometallurgy of Trace Elements in the Hrazdan Iron Deposit
Authors: Bowell Rob , Brough Christopher , Barnes Andrew , Vardanyan Arman
Published: October 2021

This study presents an evaluation of arsenic and other trace metals in the Hrazdan Iron-Ore project in Armenia using a methodology typically associated with Geometallurgical characterization. The principal host of the trace elements is pyrite and oxidized equivalents. Pyrite is a mineral of elemental concern as it has the potential to generate acidic pH in water that it contacts and thus mobilize metals of concern. In the Hrazdan deposit, there is a general excess of neutralizing carbonate minerals that result in adequate buffering of generated acid and limiting the mobility of metal cations in solution. However, metalloids that form oxyanions species such as those of arsenic or chromium tend to be more mobile in neutral to alkaline mine drainage. From the geometallurgical assessment of the mine waste, the results of the geochemical testwork can be explained and the information used to assess potential issues with mine waste storage, timing of metal release and provide a baseline for mitigation strategies.
Genetic Environments of the Eunjeok Au–Ag Deposit in the Yeongam District: Implications for Cretaceous Epithermal Au–Ag Mineralization in South Korea
Authors: Heo Chul-Ho , Kim Seong-Yong , Oh Il-Hwan
Published: October 2021

Eunjeok Au–Ag deposits are situated in the Yeongam district, Cheollanamdo-province, South Korea. They are genetically related to the Bulgugsa magmatic event (ca. 110–60 Ma), caused by the transition in the subduction direction and style of the Izanagi Plate. Three gold- and silver-bearing hydrothermal veins filled the fractures of the Cretaceous rhyolitic tuff. The major ore minerals were arsenopyrite (31.47–32.20 at.% As), pyrite, chalcopyrite, sphalerite (8.58–10.71 FeS mole%) and galena with minor amounts of electrum (62.77–78.15 at.% Au), native silver, and argentite. Sericitization was dominant in the alteration zone. The various textures of quartz veins (i.e., breccia, crustiform, comb, and vuggy) may indicate the formation of an epithermal environment. The auriferous fluids with the H2O–NaCl system have homogenization temperatures and salinities of 204 °C to 314 °C, less than 10 wt.% equiv. NaCl, and experienced mixing (dilution and cooling) events during mineralization. Considering the characteristics of the geologic setting, major fault system, and host rock, the Eunjeok Au–Ag deposit within the Yeongam district tends to share the general geologic characteristics of Haenam–Jindo epithermal mineralization episodes. However, the age of gold–silver mineralization (86.0 Ma) is older than that of Haenam–Jindo epithermal mineralization episodes (<70.3 Ma), implying some differences exist in the genetic sequence of extensional characteristics caused by transcurrent Gwangju–Yeongdong faults.
Seismic Random Noise Attenuation Using a Tied-Weights Autoencoder Neural Network
Authors: Zhou Huailai , Guo Yangqin , Guo Ke
Published: October 2021

Random noise is unavoidable in seismic data acquisition due to anthropogenic impacts or environmental influences. Therefore, random noise suppression is a fundamental procedure in seismic signal processing. Herein, a deep denoising convolutional autoencoder network based on self-supervised learning was developed herein to attenuate seismic random noise. Unlike conventional methods, our approach did not use synthetic clean data or denoising results as a training label to build the training and test sets. We directly used patches of raw noise data to establish the training set. Subsequently, we designed a robust deep convolutional neural network (CNN), which only depended on the input noise dataset to learn hidden features. The mean square error was then evaluated to establish the cost function. Additionally, tied weights were used to reduce the risk of over-fitting and improve the training speed to tune the network parameters. Finally, we denoised the target work area signals using the trained CNN network. The final denoising result was obtained after patch recombination and inverse operation. Results based on synthetic and real data indicated that the proposed method performs better than other novel denoising methods without loss of signal quality loss.
Wildfires as a Weathering Agent of Carbonate Rocks
Authors: Shtober-Zisu Nurit , Wittenberg Lea
Published: October 2021

While most of the scientific effort regarding wildfires has predominantly focused on fire effects on vegetation and soils, the role of fire as an essential weathering agent has been largely overlooked. This study aims to evaluate rock decay processes during wildfires, in relation to ground temperatures and rock morphologies of limestone, dolomite, and chalk. In 2010, a major forest fire in Israel caused massive destruction of the exposed rocks and accelerated rock weathering over the burned slopes. While a detailed description of the bedrock exfoliation phenomenon was previously reported, here, we conducted an experimental open fire to determine the temperature and gradients responsible for boulder shattering. The results show ground temperatures of 700 °C after 5 min from ignition, while the peak temperature (880 °C) was reached after 9 min. Temperature gradients show a rapid increase during the first 5 min (136 °C/min), moderate increase during the next 4 min (43 °C/min), and slow decrease for the next 9 min (25 °C/min). After 12 min, all boulders of all formations were cracked or completely shattered. The behaviour of carbonate rocks upon heating was studied to identify the erosive effects of fire, namely the formation of new cracks and matrix deterioration.
The Effects of Munsell Neutral Grey Backgrounds on the Colour of Chrysoprase and the Application of AP Clustering to Chrysoprase Colour Grading
Authors: Jiang Yuansheng , Guo Ying , Zhou Yufei , Li Xiang , Liu Simin
Published: October 2021

Chrysoprase is a popular gemstone with consumers because of its charming apple green colour but a scientific classification of its colour has not yet been achieved. In this research, we determined the most effective background of the Munsell Chart for chrysoprase colour grading under a 6504K fluorescent lamp and applied an affinity propagation (AP) clustering algorithm to the colour grading of coloured gems for the first time. Forty gem-quality chrysoprase samples from Australia were studied using a UV-VIS spectrophotometer and Munsell neutral grey backgrounds. The results determined the effects of a Munsell neutral grey background on the observed colour. It was found that the Munsell N9.5 background was the most effective for colour grading in this case. The observed chrysoprase colours were classified into five groups: Fancy Light, Fancy, Fancy Intense, Fancy Deep and Fancy Dark. The feasibility of the colour grading scheme was verified using the colour difference formula DE2000.
Adsorption of Strontium onto Synthetic Iron(III) Oxide up to High Ionic Strength Systems
Authors: García David , Lützenkirchen Johannes , Huguenel Maximilien , Calmels Léa , Petrov Vladimir , Finck Nicolas , Schild Dieter
Published: October 2021

In this work, the adsorption behavior of Sr onto a synthetic iron(III) oxide (hematite with traces of goethite) has been studied. This solid, which might be considered a representative of Fe3+ solid phases (iron corrosion products), was characterized by X-Ray Diffraction (XRD) and X-Ray Photoelectron Spectroscopy (XPS), and its specific surface area was determined. Both XRD and XPS data are consistent with a mixed solid containing more than 90% hematite and 10% goethite. The solid was further characterized by fast acid-base titrations at different NaCl concentrations (from 0.1 to 5 M). Subsequently, for each background NaCl concentration used for the acid-base titrations, Sr-uptake experiments were carried out involving two different levels of Sr concentration (1 × 10−5 and 5 × 10−5 M, respectively) at constant solid concentration (7.3 g/L) as a function of −log([H+]/M). A Surface Complexation Model (SCM) was fitted to the experimental data, following a coupled Pitzer/surface complexation approach. The Pitzer model was applied to aqueous species. A Basic Stern Model was used for interfacial electrostatics of the system, which includes ion-specific effects via ion-specific pair-formation constants, whereas the Pitzer-approach involves ion-interaction parameters that enter the model through activity coefficients for aqueous species. A simple 1-pK model was applied (generic surface species, denoted as >XOH−1/2). Parameter fitting was carried out using the general parameter estimation software UCODE, coupled to a modified version of FITEQL2. The combined approach describes the full set of data reasonably well and involves two Sr-surface complexes, one of them including chloride. Monodentate and bidentate models were tested and were found to perform equally well. The SCM is particularly able to account for the incomplete uptake of Sr at higher salt levels, supporting the idea that adsorption models conventionally used in salt concentrations below 1 M are applicable to high salt concentrations if the correct activity corrections for the aqueous species are applied. This generates a self-consistent model framework involving a practical approach for semi-mechanistic SCMs. The model framework of coupling conventional electrostatic double layer models for the surface with a Pitzer approach for the bulk solution earlier tested with strongly adsorbing solutes is here shown to be successful for more weakly adsorbing solutes.