bluuebunny/crossref_metadata_2025 huggingface dataset:
Does Earthquake Stress Drop Increase With Depth in the Crust?
Authors: Abercrombie Rachel E. , Trugman Daniel T. , Shearer Peter M. , Chen Xiaowei , Zhang Jiewen , Pennington Colin N. , Hardebeck Jeanne L. , Goebel Thomas H. W. , Ruhl Christine J.
Published: September 2021

We combine earthquake spectra from multiple studies to investigate whether the increase in stress drop with depth often observed in the crust is real, or an artifact of decreasing attenuation (increasing Q) with depth. In many studies, empirical path and attenuation corrections are assumed to be independent of the earthquake source depth. We test this assumption by investigating whether a realistic increase in Q with depth (as is widely observed) could remove some of the observed apparent increase in stress drop with depth. We combine event spectra, previously obtained using spectral decomposition methods, for over 50,000 earthquakes (M0 to M5) from 12 studies in California, Nevada, Kansas and Oklahoma. We find that the relative high‐frequency content of the spectra systematically increases with increasing earthquake depth, at all magnitudes. By analyzing spectral ratios between large and small events as a function of source depth, we explore the relative importance of source and attenuation contributions to this observed depth dependence. Without any correction for depth‐dependent attenuation, we find a systematic increase in stress drop, rupture velocity, or both, with depth, as previously observed. When we add an empirical, depth‐dependent attenuation correction, the depth dependence of stress drop systematically decreases, often becoming negligible. The largest corrections are observed in regions with the largest seismic velocity increase with depth. We conclude that source parameter analyses, whether in the frequency or time domains, should not assume path terms are independent of source depth, and should more explicitly consider the effects of depth‐dependent attenuation.
The Impact of Sea‐Ice Drift and Ocean Circulation on Dispersal of Toothfish Eggs and Juveniles in the Ross Gyre and Amundsen Sea
Authors: Behrens Erik , Pinkerton Matt , Parker Steve , Rickard Graham , Collins Charine
Published: September 2021

Knowledge about the early life history of Antarctic toothfish (Dissostichus mawsoni) is still incomplete, particularly on the spatial and temporal extent of spawning and the subsequent transport of eggs, larvae, and juveniles from the offshore spawning areas to the continental shelf. This study used a high‐resolution hydrodynamic model to investigate the impact of ocean circulation and sea‐ice drift on the dispersal of eggs, larvae, and juvenile Antarctic toothfish. The virtual eggs were released on seamounts of the Pacific‐Antarctic ridge in the Ross Gyre and advected using hydrodynamical model data. Particles were seeded annually over the years 2002–2016 and tracked for 3 years after their release. Recruitment success was evaluated based on the number of juveniles that reached known coastal recruitment areas, between the eastern Ross and Amundsen Seas, within 3 years. Sensitivities to certain juvenile behaviors were explored and showed that recruitment success was reduced by around 70% if juveniles drifted with sea‐ice during the second winter season as this carried them into the open ocean away from the shelf region. Recruitment success increased during the second winter season if juveniles were entrained in the Ross Gyre circulation or if they actively swam toward the shelf. These modeling results suggest that the ecological advantage of sea‐ice association in the early life cycle of toothfish diminishes as they grow, promoting a behavior change during their second winter.
Potential Impacts of Lightning Flash Observations on Numerical Weather Prediction With Explicit Lightning Processes
Authors: Honda Takumi , Sato Yousuke , Miyoshi Takemasa
Published: September 2021

Although various lightning observation platforms exist, lightning flash observations have not been fully utilized for numerical weather prediction (NWP), mainly due to complications related to modeling lightning processes. Herein, we investigated the potential impacts of lightning observations using an ensemble Kalman filter (EnKF) with an NWP model, including explicit lightning processes. The EnKF included flow‐dependent error covariances between lightning flashes and the atmospheric state. Observing system simulation experiments were performed for an idealized convective case. Ensemble‐based correlations with various observations indicated that lightning flashes provide valuable information below cloud tops where satellite infrared radiances cannot observe well due to the presence of anvil clouds. Moreover, a single‐step data assimilation experiment showed that lightning flashes positively impact the analysis and forecast of wind, hydrometeors, and electric charge. The results revealed that lightning flashes are potentially useful for an EnKF with an NWP model including explicit lightning processes.
Point-of-care antimicrobial coating protects orthopaedic implants from bacterial challenge
Authors: Xi Weixian , Hegde Vishal , Zoller Stephen D. , Park Howard Y. , Hart Christopher M. , Kondo Takeru , Hamad Christopher D. , Hu Yan , Loftin Amanda H. , Johansen Daniel O. , Burke Zachary , Clarkson Samuel , Ishmael Chad , Hori Kellyn , Mamouei Zeinab , Okawa Hiroko , Nishimura Ichiro , Bernthal Nicholas M. , Segura Tatiana
Published: September 2021

Implant related infections are the most common cause of joint arthroplasty failure, requiring revision surgeries and a new implant, resulting in a cost of $8.6 billion annually. To address this problem, we created a class of coating technology that is applied in the operating room, in a procedure that takes less than 10 min, and can incorporate any desired antibiotic. Our coating technology uses an in situ coupling reaction of branched poly(ethylene glycol) and poly(allyl mercaptan) (PEG-PAM) polymers to generate an amphiphilic polymeric coating. We show in vivo efficacy in preventing implant infection in both post-arthroplasty infection and post-spinal surgery infection mouse models. Our technology displays efficacy with or without systemic antibiotics, the standard of care. Our coating technology is applied in a clinically relevant time frame, does not require modification of implant manufacturing process, and does not change the implant shelf life.
Therapeutic targeting of the PLK1-PRC1-axis triggers cell death in genomically silent childhood cancer
Authors: Li Jing , Ohmura Shunya , Marchetto Aruna , Orth Martin F. , Imle Roland , Dallmayer Marlene , Musa Julian , Knott Maximilian M. L. , Hölting Tilman L. B. , Stein Stefanie , Funk Cornelius M. , Sastre Ana , Alonso Javier , Bestvater Felix , Kasan Merve , Romero-Pérez Laura , Hartmann Wolfgang , Ranft Andreas , Banito Ana , Dirksen Uta , Kirchner Thomas , Cidre-Aranaz Florencia , Grünewald Thomas G. P.
Published: September 2021

Chromosomal instability (CIN) is a hallmark of cancer1. Yet, many childhood cancers, such as Ewing sarcoma (EwS), feature remarkably ‘silent’ genomes with minimal CIN2. Here, we show in the EwS model how uncoupling of mitosis and cytokinesis via targeting protein regulator of cytokinesis 1 (PRC1) or its activating polo-like kinase 1 (PLK1) can be employed to induce fatal genomic instability and tumor regression. We find that the EwS-specific oncogenic transcription factor EWSR1-FLI1 hijacks PRC1, which physiologically safeguards controlled cell division, through binding to a proximal enhancer-like GGAA-microsatellite, thereby promoting tumor growth and poor clinical outcome. Via integration of transcriptome-profiling and functional in vitro and in vivo experiments including CRISPR-mediated enhancer editing, we discover that high PRC1 expression creates a therapeutic vulnerability toward PLK1 inhibition that can repress even chemo-resistant EwS cells by triggering mitotic catastrophe.

Collectively, our results exemplify how aberrant PRC1 activation by a dominant oncogene can confer malignancy but provide opportunities for targeted therapy, and identify PRC1 expression as an important determinant to predict the efficacy of PLK1 inhibitors being used in clinical trials.
Strong correlation between electronic bonding network and critical temperature in hydrogen-based superconductors
Authors: Belli Francesco , Novoa Trinidad , Contreras-García J. , Errea Ion
Published: September 2021

By analyzing structural and electronic properties of more than a hundred predicted hydrogen-based superconductors, we determine that the capacity of creating an electronic bonding network between localized units is key to enhance the critical temperature in hydrogen-based superconductors. We define a magnitude named as the networking value, which correlates with the predicted critical temperature better than any other descriptor analyzed thus far. By classifying the studied compounds according to their bonding nature, we observe that such correlation is bonding-type independent, showing a broad scope and generality. Furthermore, combining the networking value with the hydrogen fraction in the system and the hydrogen contribution to the density of states at the Fermi level, we can predict the critical temperature of hydrogen-based compounds with an accuracy of about 60 K. Such correlation is useful to screen new superconducting compounds and offers a deeper understating of the chemical and physical properties of hydrogen-based superconductors, while setting clear paths for chemically engineering their critical temperatures.
Neofunctionalization of an ancient domain allows parasites to avoid intraspecific competition by manipulating host behaviour
Authors: Chen Jiani , Fang Gangqi , Pang Lan , Sheng Yifeng , Zhang Qichao , Zhou Yuenan , Zhou Sicong , Lu Yueqi , Liu Zhiguo , Zhang Yixiang , Li Guiyun , Shi Min , Chen Xuexin , Zhan Shuai , Huang Jianhua
Published: September 2021

Intraspecific competition is a major force in mediating population dynamics, fuelling adaptation, and potentially leading to evolutionary diversification. Among the evolutionary arms races between parasites, one of the most fundamental and intriguing behavioural adaptations and counter-adaptations are superparasitism and superparasitism avoidance. However, the underlying mechanisms and ecological contexts of these phenomena remain underexplored. Here, we apply theDrosophilaparasiteLeptopilina boulardias a study system and find that this solitary endoparasitic wasp provokes a host escape response for superparasitism avoidance. We combine multi-omics and in vivo functional studies to characterize a small set of RhoGAP domain-containing genes that mediate the parasite’s manipulation of host escape behaviour by inducing reactive oxygen species in the host central nervous system. We further uncover an evolutionary scenario in which neofunctionalization and specialization gave rise to the novel role of RhoGAP domain in avoiding superparasitism, with an ancestral origin prior to the divergence betweenLeptopilinaspecialist and generalist species. Our study suggests that superparasitism avoidance is adaptive for a parasite and adds to our understanding of how the molecular manipulation of host behaviour has evolved in this system.
A bacterial kinase phosphorylates OSK1 to suppress stomatal immunity in rice
Authors: Wang Shanzhi , Li Shuai , Wang Jiyang , Li Qian , Xin Xiu-Fang , Zhou Shuang , Wang Yanping , Li Dayong , Xu Jiaqing , Luo Zhao-Qing , He Sheng Yang , Sun Wenxian
Published: September 2021

The Xanthomonas outer protein C2 (XopC2) family of bacterial effectors is widely found in plant pathogens and Legionella species. However, the biochemical activity and host targets of these effectors remain enigmatic. Here we show that ectopic expression of XopC2 promotes jasmonate signaling and stomatal opening in transgenic rice plants, which are more susceptible to Xanthomonas oryzae pv. oryzicola infection. Guided by these phenotypes, we discover that XopC2 represents a family of atypical kinases that specifically phosphorylate OSK1, a universal adaptor protein of the Skp1-Cullin-F-box ubiquitin ligase complexes. Intriguingly, OSK1 phosphorylation at Ser53 by XopC2 exclusively increases the binding affinity of OSK1 to the jasmonate receptor OsCOI1b, and specifically enhances the ubiquitination and degradation of JAZ transcription repressors and plant disease susceptibility through inhibiting stomatal immunity. These results define XopC2 as a prototypic member of a family of pathogenic effector kinases and highlight a smart molecular mechanism to activate jasmonate signaling.
The effects of ecological rehabilitation projects on the resilience of an extremely drought-prone desert riparian forest ecosystem in the Tarim River Basin, Xinjiang, China
Authors: Fu Aihong , Li Weihong , Chen Yaning , Wang Yi , Hao Haichao , Li Yupeng , Sun Fan , Zhou Honghua , Zhu Chenggang , Hao Xingming
Published: September 2021

The Tarim River Basin in Xinjiang, China, has a typical desert riparian forest ecosystem. Analysis of the resilience of this type of ecosystem under extreme drought conditions and ecological rehabilitation projects could provide a theoretical basis for understanding ecosystem stability and resistance, and provide new ecological rehabilitation measures to improve ecosystem resilience. We employed a quantitative framework to assess net primary productivity (NPP) resilience, emphasizing four aspects of NPP dynamics: NPP, NPP stability, NPP resistance, and maximum NPP potential. We compared ecosystem resilience across four time periods: before the implementation of ecological rehabilitation projects (1990–2000), during construction and partial implementation of ecological rehabilitation projects (2001–2012), during the initial project stage of ecological rehabilitation (2013–2015), and during the late project stage of ecological rehabilitation (2016–2018). There are three main finding of this research. (1) Mean NPP was increased significantly from 2013 and was decreased from 2016, especially in the main stream of the Tarim River and in the basins of eight of its nine tributary rivers. (2) Ecosystem resilience in 2013–2018 was greater than in 1990–2012, with the greatest NPP stability, mean NPP and NPP resistance, especially in part one of the river basin (the Aksu River, the Weigan-Kuche River, the Dina River, the Kaidu-Konqi River, and the main stream of the Tarim River). Ecosystem resilience in 2001–2012 was lowest when compared to 1990–2000 and 2013–2018, with lowest mean NPP, NPP stability, NPP resistance and maximum NPP potential, particularly in part two of the river basin (the Kashigr River, the Yarkand River and the Hotan River basins). Therefore, part one was most affected by ecological restoration projects. When 2013–2018 was divided into two distinct stages, 2013–2015 and 2016–2018, resilience in the latter stage was the lowest, with lowest mean NPP, NPP resistance and maximum NPP potential, especially in the main stream of the Tarim River. This may be due to unreasonable water conveyance in 2014–2015. (3) Ecological resilience has increased significantly in 2013–2015 after the implementation of ecological water transfer projects, river regulation, and natural vegetation enclosure projects. Ecosystem resilience could continue to increase even more in the future with the continued implementation of reasonable ecological water transfer projects.
Trait-mediated shifts and climate velocity decouple an endothermic marine predator and its ectothermic prey
Authors: Thorne L. H. , Nye J. A.
Published: September 2021

Climate change is redistributing biodiversity globally and distributional shifts have been found to follow local climate velocities. It is largely assumed that marine endotherms such as cetaceans might shift more slowly than ectotherms in response to warming and would primarily follow changes in prey, but distributional shifts in cetaceans are difficult to quantify. Here we use data from fisheries bycatch and strandings to examine changes in the distribution of long-finned pilot whales (Globicephala melas), and assess shifts in pilot whales and their prey relative to climate velocity in a rapidly warming region of the Northwest Atlantic. We found a poleward shift in pilot whale distribution that exceeded climate velocity and occurred at more than three times the rate of fish and invertebrate prey species. Fish and invertebrates shifted at rates equal to or slower than expected based on climate velocity, with more slowly shifting species moving to deeper waters. We suggest that traits such as mobility, diet specialization, and thermoregulatory strategy are central to understanding and anticipating range shifts. Our findings highlight the potential for trait-mediated climate shifts to decouple relationships between endothermic cetaceans and their ectothermic prey, which has important implications for marine food web dynamics and ecosystem stability.
Rs4911154 of circ-ITCH aggravated tumor malignancy of thyroid nodules via the circ-ITCH/miR-22-3p/CBL axis
Authors: Guo Yiqing , Zheng Hua , Yin Jie , Wang Huaming
Published: September 2021

Recent evidence revealed an inhibitory effect of circ-ITCH on the progression of papillary thyroid cancer via affecting the circ-ITCH/miR-22-3p/CBL axis. Rs4911154, an SNP located in circ-ITHC, was previously reported to be significantly associated with an increased risk of hepatocellular carcinoma. Ultrasound testing was used to evaluate the doubling time of thyroid nodules. 202 patients diagnosed with thyroid nodule disorders were divided into three groups according to their genotypes at rs4911154. We found that the A allele was correlated with a shortening doubling time of thyroid nodules. Moreover, the A allele contributed to reduced expression of circ-ITCH/CBL and increased expression of miR-22-3p. Besides, decreased tissue apoptosis was linked to the A allele. Luciferase assays indicated that miR-22-3p could effectively suppress the luciferase activities of CBL and circ-ITCH. Furthermore, manual up-regulation of miR-22-3p effectively suppressed the expression of CBL, while CBL siRNA apparently abolished circ-ITCH induced CBL upregulation, reduced proliferation and increased apoptosis of K1 and TPC-1 cells. A signaling pathway of circ-ITCH/miR-22-3p/CBL axis was established to explain the effect of SNP of circ-ITCH in thyroid tumor malignancy. Compared with the G allele, the A allele in rs4911154 contributed to the malignancy of thyroid nodules with decreased doubling time and down-regulated CBL expression.
Heavy metals immobilization and improvement in maize (Zea mays L.) growth amended with biochar and compost
Authors: Irfan Muhammad , Mudassir Muhammad , Khan Muhammad Jamal , Dawar Khadim Muhammad , Muhammad Dost , Mian Ishaq Ahmad , Ali Waqas , Fahad Shah , Saud Shah , Hayat Zafar , Nawaz Taufiq , Khan Shah Alam , Alam Sartaj , Ali Beenish , Banout Jan , Ahmed Sagher , Mubeen Sidra , Danish Subhan , Datta Rahul , Elgorban Abdallah M. , Dewil Raf
Published: September 2021

Soil with heavy metals contamination, mainly lead (Pb), cadmium (Cd), and chromium (Cr) is a progressively worldwide alarming environmental problem. Recently, biochar has been used as a soil amendment to remediate contaminated soils, but little work has been done to compare with other organic amendments like compost. We investigated biochar and compost's comparative effect on Pb, Cd, and Cr immobilization in soil, photosynthesis, and growth of maize plants. Ten kg soil was placed in pots and were spiked with Pb, Cd, and Cr at concentrations 20, 10, 20 mg kg−1. The biochar and compost treatments included 0, 0.5, 1, 2, and 4% were separately applied to the soil. The crop from pots was harvested after 60 days. The results show that the highest reduction of AB-DTPA extractable Pb, Cd, and Cr in soil was 79%, 61% and 78% with 4% biochar, followed by 61%, 43% and 60% with 4% compost compared to the control, respectively. Similarly, the highest reduction in shoot Pb, Cd, and Cr concentration was 71%, 63% and 78%with 4% biochar, followed by 50%, 50% and 71% with 4% compost than the control, respectively. The maximum increase in shoot and dry root weight, total chlorophyll contents, and gas exchange characteristics were recorded with 4% biochar, followed by 4% compost than the control. The maximum increase in soil organic matter and total nitrogen (N) was recorded at 4% biochar application while available phosphorus and potassium in the soil at 4% compost application. It is concluded that both biochar and compost decreased heavy metals availability in the soil, reducing toxicity in the plant. However, biochar was most effective in reducing heavy metals content in soil and plant compared to compost. In the future, more low-cost, eco-friendly soil remediation methods should be developed for better soil health and plant productivity.
Children and adolescents with neurodevelopmental disorders show cognitive heterogeneity and require a person-centered approach
Authors: Márquez-Caraveo María Elena , Rodríguez-Valentín Rocío , Pérez-Barrón Verónica , Vázquez-Salas Ruth Argelia , Sánchez-Ferrer José Carlos , De Castro Filipa , Allen-Leigh Betania , Lazcano-Ponce Eduardo
Published: September 2021

We aimed to identify patterns of cognitive differences and characterize subgroups of Mexican children and adolescents with three neurodevelopmental disorders (NDD): intellectual disability (ID), autism spectrum disorders (ASD) and attention deficit/hyperactivity disorder (ADHD). The sample included 74 children and adolescents 6–15 years; 34% had ID, ASD or ADHD, 47% had ID in comorbidity with ASD, ADHD or both, 11% had ASD + ADHD, 8% were children without NDD. We applied WISC-IV, Autism Diagnostic Interview-Revised, Mini-International Neuropsychiatric Structured Interview, Child Behavior Checklist, and UNICEF Child Functioning Module. We evaluated the normality of the WISC-IV sub-scales using the Shapiro-Francia test, then conducted a latent class analysis and assessed inter-class differences in terms of household, parent and child characteristics. The following four-class solution best fit the data: “Lower Cognitive Profile” (LCP), “Lower Working Memory” (LWM), “Higher Working Memory” (HWM), “Higher Cognitive Profile” (HCP). LCP included most of the children with ID, who had a low Working Memory (WM) index score. LWM included mainly children with ASD or ID + ADHD; their Perceptual Reasoning (PR) and Processing Speed (PS) index scores were much higher than those for Verbal Comprehension (VC) and WM. HWM included children with ASD or ADHD; their scores for PR, PS and VC were high with lower WM (although higher than for LWM). HCP included children without NDD and with ASD or ADHD or both and had the highest scores on all indices. Children with NDD show cognitive heterogeneity and thus require individualized treatment plans.
Differential expression of tear film cytokines in Stevens–Johnson syndrome patients and comparative review of literature
Authors: Koduri Madhuri Amulya , Prasad Deeksha , Upadhyaya Shriya , Jaffet Jilu , Shanbhag Swapna S. , Basu Sayan , Singh Vivek
Published: September 2021

To investigate the differential expression of tear cytokine levels among chronic Stevens–Johnson syndrome (SJS) patients to better understand the role of significantly altered cytokines in disease development. Tear samples were collected using Schirmer strips in 24 eyes of chronic SJS, 24 eyes of age and gender-matched controls, and 14 eyes of aqueous deficiency dry eye disease (DED) patients. The cytokine analysis was performed among 18 analytes which include pro-inflammatory, anti-inflammatory factors, and ELR-negative CXC chemokines. String analysis was performed for the significantly altered cytokines to understand their co-expression and role in the disease development. Additionally, a literature review was conducted to identify the signature cytokines present in chronic SJS tears. The differential expression of IL-6 (p ≤ 0.029), CXCL8/IL-8 (p ≤ 0.009), IL-1β (p ≤ 0.041), IL-2 (p ≤ 0.025), IL-10 (p ≤ 0.053), and CXCL-10 (p ≤ 0.044) were observed in chronic SJS patients and healthy controls. Whereas, IL-6 (p ≤ 0.029), CXCL8/IL-8 (p ≤ 0.058), CCL4 (p ≤ 0.056), GM-CSF (p ≤ 0.0001) IL-10 (p ≤ 0.025), and CXCL-10 (p ≤ 0.010), were differentially expressed in SJS as compared to severe DED patients. String analysis of the significantly altered cytokines revealed the involvement of several biological processes including the chronic inflammatory response, nitric oxide synthesis, angiogenesis, and cellular response to drugs. Among all the cytokines evaluated, the expression of CXCL8/IL-8 and CXCL10 levels were consistently reported in the literature. There was a differential expression of tear cytokines in SJS when compared to DED and healthy controls. The differential expression of CXCL8/IL-8 and CXCL10 was in line with existing literature and their role in chronic SJS pathogenesis merits further evaluation.
Temporal subtraction CT with nonrigid image registration improves detection of bone metastases by radiologists: results of a large-scale observer study
Authors: Onoue Koji , Yakami Masahiro , Nishio Mizuho , Sakamoto Ryo , Aoyama Gakuto , Nakagomi Keita , Iizuka Yoshio , Kubo Takeshi , Emoto Yutaka , Akasaka Thai , Satoh Kiyohide , Yamamoto Hiroyuki , Isoda Hiroyoshi , Togashi Kaori
Published: September 2021

To determine whether temporal subtraction (TS) CT obtained with non-rigid image registration improves detection of various bone metastases during serial clinical follow-up examinations by numerous radiologists. Six board-certified radiologists retrospectively scrutinized CT images for patients with history of malignancy sequentially. These radiologists selected 50 positive and 50 negative subjects with and without bone metastases, respectively. Furthermore, for each subject, they selected a pair of previous and current CT images satisfying predefined criteria by consensus. Previous images were non-rigidly transformed to match current images and subtracted from current images to automatically generate TS images. Subsequently, 18 radiologists independently interpreted the 100 CT image pairs to identify bone metastases, both without and with TS images, with each interpretation separated from the other by an interval of at least 30 days. Jackknife free-response receiver operating characteristics (JAFROC) analysis was conducted to assess observer performance. Compared with interpretation without TS images, interpretation with TS images was associated with a significantly higher mean figure of merit (0.710 vs. 0.658; JAFROC analysis, P = 0.0027). Mean sensitivity at lesion-based was significantly higher for interpretation with TS compared with that without TS (46.1% vs. 33.9%; P = 0.003). Mean false positive count per subject was also significantly higher for interpretation with TS than for that without TS (0.28 vs. 0.15; P < 0.001). At the subject-based, mean sensitivity was significantly higher for interpretation with TS images than that without TS images (73.2% vs. 65.4%; P = 0.003). There was no significant difference in mean specificity (0.93 vs. 0.95; P = 0.083). TS significantly improved overall performance in the detection of various bone metastases.
Social and economic inequality in coronavirus disease 2019 vaccination coverage across Illinois counties
Authors: Liao Tim F.
Published: September 2021

Prior research has well established the association of ethno-racial and economic inequality with COVID-19 incidence and mortality rates across counties in the US. In this ecological study, a similar association was found between ethno-racial and economic inequality and COVID-19 full vaccination rates across the 102 counties in the American state of Illinois in the early months of vaccination. Among the counties with income inequality below the median, a county’s poverty rate had a negative association with the proportion of population fully vaccinated. However, among the counties with income inequality above the median, a higher percentage of Black or Hispanic population was persistently associated with a lower proportion of fully vaccinated population over the two-month period from early February to early April of 2021.
Bisphenol-A in biological samples of breast cancer mastectomy and mammoplasty patients and correlation with levels measured in urine and tissue
Authors: Keshavarz-Maleki Razieh , Kaviani Ahmad , Omranipour Ramesh , Gholami Maryam , Khoshayand Mohammad Reza , Ostad Seyed Nasser , Sabzevari Omid
Published: September 2021

Endocrine disrupting chemicals (EDCs) are organic compounds that have estrogenic activity and can interfere with the endocrine system. Bisphenol-A (BPA) is one of these compounds which possess a potential risk for breast cancer. The aim of this research was to evaluate BPA concentration in both the urine and breast adipose tissue samples of breast cancer mastectomy and mammoplasty patients and study correlations of BPA levels in breast adipose tissue with urine samples in the both groups. Urine and breast adipose tissue samples from 41 breast cancer mastectomy and 11 mammoplasty patients were taken. BPA concentrations were detected using an ELISA assay. Urinary BPA concentrations were significantly higher in cancerous patients (2.12 ± 1.48 ng/ml;P < 0.01) compared to non-cancerous (0.91 ± 0.42 ng/ml). Likewise, tissue BPA concentrations in cancerous patients (4.20 ± 2.40 ng/g tissue;P < 0.01) were significantly higher than non- cancerous (1.80 ± 1.05 ng/g tissue). Urinary BPA concentrations were positively correlated with breast adipose tissue BPA in the case group (P < 0.001, R = 0.896). We showed that BPA was present in urine and breast adipose tissue samples of the studied populations. With regard to higher BPA mean concentration in cancerous patients than non-cancerous individuals in this study, BPA might increase the risk of breast cancer incidence.
Drug-resistant Staphylococcus aureus bacteria detection by combining surface-enhanced Raman spectroscopy (SERS) and deep learning techniques
Authors: Ciloglu Fatma Uysal , Caliskan Abdullah , Saridag Ayse Mine , Kilic Ibrahim Halil , Tokmakci Mahmut , Kahraman Mehmet , Aydin Omer
Published: September 2021

Over the past year, the world's attention has focused on combating COVID-19 disease, but the other threat waiting at the door—antimicrobial resistance should not be forgotten. Although making the diagnosis rapidly and accurately is crucial in preventing antibiotic resistance development, bacterial identification techniques include some challenging processes. To address this challenge, we proposed a deep neural network (DNN) that can discriminate antibiotic-resistant bacteria using surface-enhanced Raman spectroscopy (SERS). Stacked autoencoder (SAE)-based DNN was used for the rapid identification of methicillin-resistant Staphylococcus aureus (MRSA) and methicillin-sensitive S. aureus (MSSA) bacteria using a label-free SERS technique. The performance of the DNN was compared with traditional classifiers. Since the SERS technique provides high signal-to-noise ratio (SNR) data, some subtle differences were found between MRSA and MSSA in relative band intensities. SAE-based DNN can learn features from raw data and classify them with an accuracy of 97.66%. Moreover, the model discriminates bacteria with an area under curve (AUC) of 0.99. Compared to traditional classifiers, SAE-based DNN was found superior in accuracy and AUC values. The obtained results are also supported by statistical analysis. These results demonstrate that deep learning has great potential to characterize and detect antibiotic-resistant bacteria by using SERS spectral data.
Thermal evolution of Andean iron oxide–apatite (IOA) deposits as revealed by magnetite thermometry
Authors: Palma Gisella , Reich Martin , Barra Fernando , Ovalle J. Tomás , del Real Irene , Simon Adam C.
Published: September 2021

Magnetite is the main constituent of iron oxide–apatite (IOA) deposits, which are a globally important source of Fe and other elements such as P and REE, critical for modern technologies. Geochemical studies of magnetite from IOA deposits have provided key insights into the ore-forming processes and source of mineralizing fluids. However, to date, only qualitative estimations have been obtained for one of the key controlling physico-chemical parameters, i.e., the temperature of magnetite formation. Here we reconstruct the thermal evolution of Andean IOA deposits by using magnetite thermometry. Our study comprised a > 3000 point geochemical dataset of magnetite from several IOA deposits within the Early Cretaceous Chilean Iron Belt, as well as from the Pliocene El Laco IOA deposit in the Chilean Altiplano. Thermometry data reveal that the deposits formed under a wide range of temperatures, from purely magmatic (~ 1000 to 800 °C), to late magmatic or magmatic-hydrothermal (~ 800 to 600 °C), to purely hydrothermal (< 600 °C) conditions. Magnetite cooling trends are consistent with genetic models invoking a combined igneous and magmatic-hydrothermal origin that involve Fe-rich fluids sourced from intermediate silicate magmas. The data demonstrate the potential of magnetite thermometry to better constrain the thermal evolution of IOA systems worldwide, and help refine the geological models used to find new resources.
A combination approach of pseudotime analysis and mathematical modeling for understanding drug-resistant mechanisms
Authors: Magi Shigeyuki , Ki Sewon , Ukai Masao , Domínguez-Hüttinger Elisa , Naito Atsuhiko T , Suzuki Yutaka , Okada Mariko
Published: September 2021

Cancer cells acquire drug resistance through the following stages: nonresistant, pre-resistant, and resistant. Although the molecular mechanism of drug resistance is well investigated, the process of drug resistance acquisition remains largely unknown. Here we elucidate the molecular mechanisms underlying the process of drug resistance acquisition by sequential analysis of gene expression patterns in tamoxifen-treated breast cancer cells. Single-cell RNA-sequencing indicates that tamoxifen-resistant cells can be subgrouped into two, one showing altered gene expression related to metabolic regulation and another showing high expression levels of adhesion-related molecules and histone-modifying enzymes. Pseudotime analysis showed a cell transition trajectory to the two resistant subgroups that stem from a shared pre-resistant state. An ordinary differential equation model based on the trajectory fitted well with the experimental results of cell growth. Based on the established model, it was predicted and experimentally validated that inhibition of transition to both resistant subtypes would prevent the appearance of tamoxifen resistance.
A novel strategy for stabilization of sub-nanometric Pd colloids on kryptofix functionalized MCM-41: nanoengineered material for Stille coupling transformation
Authors: Alamgholiloo Hassan , Pesyan Nader Noroozi , Rostamnia Sadegh
Published: September 2021

The stabilization of sub-nanometric metal particles (< 1 nm) with suitable distribution remained challenging in the catalytic arena. Herein, an intelligent strategy was described to anchoring and stabilizing sub-nanometric Pd colloids with an average size of 0.88 nm onto Kryptofix 23 functionalized MCM-41. Then, the catalytic activity of Pd@Kryf/MCM-41 was developed in Stille coupling reaction with a turnover frequency (TOF) value of 247 h−1. The findings demonstrate that porous MCM-41 structure and high-affinity Kryptofix 23 ligand toward adsorption of Pd colloids has a vital role in stabilizing the sub-nanometric particles and subsequent catalytic activity. Overall, these results suggest that Pd@Kryf/MCM-41 is a greener, more suitable option for large-scale applications and provides new insights into the stabilization of sub-nanometric metal particles.
A novel antioxidant ergothioneine PET radioligand for in vivo imaging applications
Authors: Behof William J. , Whitmore Clayton A. , Haynes Justin R. , Rosenberg Adam J. , Tantawy Mohammed N. , Peterson Todd E. , Harrison Fiona E. , Beelman Robert B. , Pham Wellington
Published: September 2021

Ergothioneine (ERGO) is a rare amino acid mostly found in fungi, including mushrooms, with recognized antioxidant activity to protect tissues from damage by reactive oxygen species (ROS) components. Prior to this publication, the biodistribution of ERGO has been performed solely in vitro using extracted tissues. The aim of this study was to develop a feasible chemistry for the synthesis of an ERGO PET radioligand, [11C]ERGO, to facilitate in vivo study. The radioligand probe was synthesized with identical structure to ERGO by employing an orthogonal protection/deprotection approach. [11C]methylation of the precursor was performed via [11C]CH3OTf to provide [11C]ERGO radioligand. The [11C]ERGO was isolated by RP-HPLC with a molar activity of 690 TBq/mmol. To demonstrate the biodistribution of the radioligand, we administered approximately 37 MBq/0.1 mL in 5XFAD mice, a mouse model of Alzheimer’s disease via the tail vein. The distribution of ERGO in the brain was monitored using 90-min dynamic PET scans. The delivery and specific retention of [11C]ERGO in an LPS-mediated neuroinflammation mouse model was also demonstrated. For the pharmacokinetic study, the concentration of the compound in the serum started to decrease 10 min after injection while starting to distribute in other peripheral tissues. In particular, a significant amount of the compound was found in the eyes and small intestine. The radioligand was also distributed in several regions of the brain of 5XFAD mice, and the signal remained strong 30 min post-injection. This is the first time the biodistribution of this antioxidant and rare amino acid has been demonstrated in a preclinical mouse model in a highly sensitive and non-invasive manner.
Effect of cryoprecipitate transfusion therapy in patients with postpartum hemorrhage: a retrospective cohort study
Authors: Kamidani Ryo , Miyake Takahito , Okada Hideshi , Yoshimura Genki , Kusuzawa Keigo , Miura Tomotaka , Shimaoka Ryuichi , Oiwa Hideaki , Yamaji Fuminori , Mizuno Yosuke , Yasuda Ryu , Kitagawa Yuichiro , Fukuta Tetsuya , Ishihara Takuma , Shiga Tomomi , Okamoto Haruka , Tachi Masahito , Shiba Masato , Kanda Norihide , Nachi Sho , Doi Tomoaki , Yoshida Takahiro , Yoshida Shozo , Morishige Kenichiro , Ogura Shinji
Published: September 2021

To evaluate the effect of cryoprecipitate (CRYO) transfusion in women referred for postpartum hemorrhage (PPH). This retrospective cohort study included patients with primary PPH referred to Gifu University Hospital between April 2013 and March 2020. We analyzed the effect of CRYO transfusion on fluid balance 24 h after the initial examination using a multivariable linear regression model adjusted for several confounding variables. To evaluate whether outcomes were modified by active bleeding, an interaction term of CRYO*active bleeding was incorporated into the multivariable model. We identified 157 women: 38 in the CRYO group (cases) and 119 in the control group. Fluid balance in the aforementioned period tended to decrease in the CRYO group compared with that in the control group (coefficient − 398.91; 95% CI − 1298.08 to + 500.26; p = 0.382). Active bleeding on contrast-enhanced computed tomography affected the relationship between CRYO transfusion and fluid balance (p = 0.016). Other outcomes, except for the overall transfusion requirement, were not significantly different; however, the interaction effect of active bleeding was significant (p = 0.016). CRYO transfusion may decrease the fluid balance in the first 24 h in PPH patients, especially in those without active bleeding.
Effects of fertilizer practice on fungal and actinobacterial cellulolytic community with different humified particle-size fractions in double-cropping field
Authors: Tang Haiming , Li Chao , Xu Yilan , Cheng Kaikai , Shi Lihong , Wen Li , Li Weiyan , Xiao Xiaoping
Published: September 2021

Cellulose plays an important role in maintaining or improving soil carbon (C) cycling and soil fertility of paddy field. There had close relationship between functional cellulose genes (cbhIandGH48) with characterize of soil organic matter chemical components (fulvic acid and humic acid) and soil physical fractions. However, there is still limited information about how functional cellulose degradation response to long-term fertilizer management and their relative importance for C sequestration under the double-cropping rice paddy field in southern of China. Therefore, the objective of this study were investigated the effects of 34-years long-term fertilizer regime on community abundance ofcbhIandGH48genes in five soil particle-size fractions (> 2000 μm, 2000–200 μm, 200–50 μm, 50–2 μm and 2–0.1 μm) by using polarization magic angle spinning13C nuclear magnetic resonance spectroscopy. The field experiment was included four different fertilizer treatments: chemical fertilizer alone (MF), rice straw and chemical fertilizer (RF), 30% organic manure and 70% chemical fertilizer (OM), and without fertilizer input as a control (CK). The results showed that distribution of soil humus and cellulolytic microbial community abundance was significant increased under long-term application of crop residue and organic manure condition. And the FA, HA and HM C contents in > 2000 μm and 2000–50 μm fractions with MF, RF and OM treatments were significant higher than that of CK treatment. Meanwhile, the alkyl C and Oalkyl C groups of FA and HA in > 2000 μm fraction with MF, RF, OM and CK treatments were higher than that of the other fractions. There had higher AL% and lower ARO% of FA and HA in different particle-size fractions with MF, RF, OM and CK treatments. The results indicated that abundance ofcbhIandGH48genes in different particle-size fractions with RF and OM treatments were significant increased, compared with CK treatment. There had significant positive correlation between soil humus C components (FA and HA) with abundance ofcbhIandGH48genes, and the o-alkyl C and AL% of FA were positively correlated with abundance ofcbhIandGH48genes. As a result, the community abundance ofcbhIandGH48genes were significant increased under combined application of crop residue and organic manure with chemical fertilizer condition.
Trait anxiety predicts amygdalar responses during direct processing of threat-related pictures
Authors: Lin Huiyan , Miltner Wolfgang H. R. , Straube Thomas
Published: September 2021

Previous studies on the associations between trait anxiety and amygdalar responses to threat stimuli have resulted in mixed findings, possibly due to sample characteristics, specific tasks, and analytical methods. The present functional magnetic resonance imaging (fMRI) study aimed to investigate linear or non-linear associations between trait anxiety and amygdalar responses in a sample of participants with low, medium, and high trait anxiety scores. During scanning, participants were presented with threat-related or neutral pictures and had either to solve an emotional task or an emotional-unrelated distraction task. Results showed that only during the explicit task trait anxiety was associated with right amygdalar responses to threat-related pictures as compared to neutral pictures. The best model was a cubic model with increased amygdala responses for very low and medium trait anxiety values but decreased amygdala activation for very high trait anxiety values. The findings imply a non-linear relation between trait anxiety and amygdala activation depending on task conditions.
Extent and characteristic of relationships in canal dimension and canal body ratio between cervical and lumbar spine
Authors: Lee Jung-Hee , Kang Kyung-Chung , Kim Ki-Tack , Kim Yong-Chan , Chang Tae-Soo
Published: September 2021

A known prevalence of concurrent cervical and lumbar spinal stenosis was shown to be 5–25%, but there is a lack of evidence regarding direct relationships in canal dimension and canal-body ratio between cervical and lumbar spine. Total 247 patients (mean age: 61 years, male: 135) with cervical and lumbar computed tomography scans were retrospectively reviewed. Midsagittal vertebral body and canal diameters in reconstructed images were measured at all cervical and lumbar vertebrae, and canal-body ratios were calculated. The canal diameter and ratio were also compared according to the gender and age, and correlation analysis was performed for each value. There were significant correlations between cervical (C3–C7) and lumbar (L1–L5) canal dimension (p < 0.001). C5 canal diameter was most significantly correlated with L4 canal diameter (r = 0.435, p < 0.001). Cervical canal-body ratios (C3–C7) were also correlated with those of lumbar spine (L1–L5) (p < 0.001). The canal-body ratio of C3 was most highly correlated with L3 (r = 0.477, p < 0.001). Meanwhile, mean canal-body ratios of C3 and L3 were significantly smaller in male patients than female (p = 0.038 and p < 0.001) and patient’s age was inversely correlated with C5 canal diameter (r = − 0.223, p < 0.001) and C3 canal-body ratio (r = − 0.224, p < 0.001). Spinal canal dimension and canal-body ratio have moderate degrees of correlations between cervical and lumbar spine and the elderly male patients show the tendency of small canal diameter and canal-body ratio. This relationship of cervical and lumbar spine can be an important evidence to explain to the patients.
Impact of tillage and crop establishment methods on rice yields in a rice-ratoon rice cropping system in Southwest China
Authors: Jiang Peng , Xu Fuxian , Zhang Lin , Liu Mao , Xiong Hong , Guo Xiaoyi , Zhu Yongchuan , Zhou Xingbing
Published: September 2021

Simplified cultivation methods for rice production offer considerable social, economic, and environmental benefits. However, limited information is available on yield components of rice grown using simplified cultivation methods in a rice-ratoon rice cropping system. A field experiment using two hybrid and two inbred rice cultivars was conducted to compare four cultivation methods (conventional tillage and transplanting, CTTP; conventional tillage and direct seeding, CTDS; no-tillage and transplanting, NTTP; no-tillage and direct seeding, NTDS) in a rice-ratoon rice system from 2017 to 2020. Main season yields for CTDS and NTDS were higher than for CTTP by 6.1% and 2.8%, respectively; whereas ratoon season yields for CTDS and NTDS were equal to or higher than for CTTP. Annual grain yields for CTDS and NTDS were higher than for CTTP by 4.4% and 3.2%, respectively. The higher CTDS and NTDS yields were associated with higher panicle numbers per m2 and biomass production. Rice hybrids had higher yields than inbred cultivars by 15.8–19.3% for main season and by 15.6–19.4% for ratoon season, which was attributed to long growth duration, high grain weight and biomass production. Our results suggest that CTTP can be replaced by CTDS and NTDS to maintain high grain yields and save labor costs. Developing cultivars with high grain weight could be a feasible approach to achieve high rice yields in the rice-ratoon rice cropping system in southwest China.