bluuebunny/crossref_metadata_2025 huggingface dataset:
Silicon quantum dots inlaid micron graphite anode for fast chargeable and high energy density Li-ion batteries
Authors: Li Huanxin , Buckingham Mark A.
Published: December 2022

The pursuit of rapid charging and high energy density in commercial lithium-ion batteries (LIBs) has been one of the priorities in battery research. Silicon-Carbon (Si-C), a possible substitute for graphite as an anode electrode material, is one prospect to achieving this goal. There is a debate as to whether nanoscale or the micron-scale silicon is more favourable as anode materials for LIBs. Micron-scale silicon exhibits relatively higher initial coulomb efficiency (CE) compared with nanoscale silicon, while its cycle stability is poorer. However, minimizing silicon normally benefits the cycle stability, but introduces serious side reactions, due to the large active surface for nanoscale silicon. Here, we propose silicon quantum dots (Si QDs) inlaid in micron graphite (SiQDs-in-MG) as an anode for high energy density and fast charging LIBs. The Si QDs almost eliminate the volume change typically observed in Si during long-term cycling, while the graphite blocks solvent entering the channels and contacting the SiQDs, promoting the generation of a stable solid electrolyte interphase, which is not in direct contact with the Si. SiQDs-in-MG addresses the main issues for Si-based anodes and is expected to achieve high energy density when in combination with a Lithium-Nickel-Manganese-Cobalt-Oxide (NMC) cathode in pouch cells.
Increasing women’s participation in wildlife governance in Zambia
Authors: Sommerville Matt , Bessa Thais , Malasha Patricia , Dooley Meagan
Published: December 2022

Community-based natural resource management bodies, including Community Resource Boards (CRBs) and Community Scouts, are responsible for governance and wildlife law enforcement in Zambia’s Game Management Areas (GMA), community lands that buffer the National Parks. Despite commitments to inclusive governance and benefit sharing, men dominate the wildlife and natural resource sectors in Zambia; they make up the vast majority of wildlife scouts who patrol the GMAs and hold most positions on the CRBs who allocate benefits and decide on management priorities. Gender blind structures within community governance institutions during the recruitment and training process and social and gender norms that see leadership roles as men’s domain act as barriers to women’s participation in the sector. In response, the United States Agency for International Development (USAID) invested in a comprehensive package of activities to increase women’s effective participation in wildlife governance and law enforcement, including gender-responsive CRB elections, empowerment training for newly elected women candidates, revised community scout training curriculum, and capacity building support for organizations that support scouts and CRBs. The intervention helped increase women’s representation in CRBs from four percent to 25 percent in pilot communities. It also supported the Department of National Parks and Wildlife (DNPW) to recruit the first gender balanced cohort of community scout recruits and field an all-women patrol unit in Lower Zambezi National Park.
CYP2C19 genotype and platelet aggregation test-guided dual antiplatelet therapy after off-pump coronary artery bypass grafting: A retrospective cohort study
Authors: Yao Haoyi , Qin Kaijie , Liu Yun , Yang Yi , Zhu Jiaxi , Chen Anqing , Wang Zhe , Ye Xiaofeng , Zhou Mi , Li Haiqing , Qiu Jiapei , Zhao Qiang , Zhu Yunpeng
Published: December 2022

Background

Dual antiplatelet therapy (DAPT) is recommended in patients undergoing off-pump coronary artery bypass graft surgery (OPCAB). Clopidogrel is less effective among patients with loss-of-function (LoF) of CYP2C19 alleles, while ticagrelor has direct effects on P2Y12 receptor. Whether a CYP2C19 genotype plus platelet aggregation test (PAgT)-guided DAPT after CABG could improve clinical outcomes remain uncertain.

Materials and methods

From August 2019 to December 2020, 1,134 consecutive patients who underwent OPCAB received DAPT for 1 year after surgery in Ruijin Hospital, Shanghai Jiao Tong University School of Medicine. According to the actual treatment they received in real-world, 382 (33.7%) of them received a traditional DAPT: aspirin 100 mg qd + clopidogrel 75 mg qd, no matter the CYP2C19 genotype and response in platelet aggregation test (PAgT). The other 752 (66.3%) patients received an individual DAPT based on CYP2C19 genotype and PAgT: aspirin 100 mg qd + clopidogrel 75 mg qd if CYP2C19 was extensive metabolizer, or moderate metabolizer but normal response in PAgT; aspirin 100 mg qd + ticagrelor 90 mg bid if CYP2C19 was poor metabolizer, or moderate metabolizer but no or low response in PAgT. One-year follow-up was achieved for all patients. The primary outcome was major adverse cardiovascular events (MACE), a composite of cardiovascular death, myocardial infarction, and stroke. The safety outcome was thrombolysis in myocardial infarction (TIMI) criteria major bleeding.

Results

Compared with the traditional DAPT group, the risk of MACE in the individual DAPT group was significantly lower (5.5 vs. 9.2%, HR 0.583; 95% CI, 0.371–0.915; P = 0.019), mainly due to the decreased risk of MI (1.7 vs. 4.2%, HR 0.407; 95% CI, 0.196–0.846; P = 0.016). The risk of TIMI major bleeding events was similar between the two groups (5.3 vs. 6.0%, RR 0.883; 95% CI, 0.537–1.453; P = 0.626).

Conclusion

For patients who underwent OPCAB, individual DAPT (CYP2C19 genotype plus PAgT-guided strategy) was associated with a lower risk of MACE and a similar risk of major bleeding.
Plasma metabolomic analysis reveals the therapeutic effects of Jiashen tablets on heart failure
Authors: Miao Xinglong , Chen Jiaping , Su Yangyan , Luo Jiayi , He Yi , Ma Jiang , He Xin
Published: December 2022

Background

Heart failure is a chronic progressive condition that significantly affects the quality of life of patients with high hospitalization and mortality rates. Jiashen tablets (JST), a Chinese herbal formula, have been reported to be an effective treatment against heart failure, however the underlying mechanisms remain obscure. This study was designed to determine the effect of JST on the treatment of heart failure and delineate the underlying mechanisms by an untargeted metabolomics approach.

Materials and methods

The chronic heart failure model was established by the permanent ligation of the left anterior descending coronary artery in rats. The cardiac functions of rats, including left ventricular ejection fraction (LVEF) and fractional shortening (LVFS), left ventricular internal diameter end diastole (LVIDd) and end systole (LVIDs), and interventricular septum thickness in diastole (IVSd) and in systole (IVSs), were measured by echocardiography. Biochemical analysis and histopathological examination were also performed to evaluate therapeutic effects of JST for treating heart failure. UHPLC-QTOF-MS/MS coupled with multivariate statistical analyses were applied for plasma metabolic profiling to identify biomarkers and potential mechanisms of JST in the treatment of heart failure.

Results

Jiashen tablets could improve the cardiac function of heart failure rats and thus ameliorate heart failure via enhancing rat LVEF and LVFS and decreasing LVIDd, LVIDs, IVSd, and IVSs. Results of biochemical analysis and histopathological examination revealed that JST could reduce the serum lactate dehydrogenase (LDH) activity and the level of NT-pro BNP, markers of heart failure and myocardial damage, and inhibit myocardial fibrosis. Furthermore, in metabolomics analysis, a total of 210 metabolites with significant differences were identified between heart failure rats and normal rats, among which 29 metabolites were significantly restored after JST treatment. These metabolites were primarily involved in tryptophan metabolism, branched-chain amino acid metabolism, fatty acids β-oxidation, and glycerophospholipid metabolism.

Conclusion

The present study illustrated the therapeutic effect of JST for the treatment of heart failure and delineated the underlying mechanisms mainly relating to the regulation of amino acid metabolism and lipid metabolism in heart failure rats.
Sex differences in one-year recurrence and all-cause mortality following catheter ablation of ventricular tachycardia in structural heart disease
Authors: Tóth Patrik , Komlósi Ferenc , Vámosi Péter , Arnóth Bence , Szegedi Nándor , Salló Zoltán , Piros Katalin , Perge Péter , Osztheimer István , Ábrahám Pál , Széplaki Gábor , Merkely Béla , Gellér László , Nagy Klaudia Vivien
Published: December 2022

Aims

We aimed to establish sex-specific predictors for 1-year VT recurrence and 1-year all-cause mortality in patients with structural heart disease undergoing catheter ablation.

Methods

We analyzed data of 299 patients recorded in our structured registry. These included medical history, echocardiography parameters, laboratory results, VT properties, procedural data.

Results

Out of the 299 patients, 34 (11%) were female. No significant difference was found between women and men in terms of VT recurrence (p = 0.74) or mortality (p = 0.07). In females, severe mitral regurgitation (MR), tricuspid regurgitation (TR), presentation with incessant VT, and preprocedural electrical storm (ES) were associated with increased risk of VT recurrence. Diabetes, implanted CRT, VT with hemodynamic instability, ES and advanced MR were the risk factors of mortality in women. ACEi/ARB use predicted a favorable outcome in both endpoints among females. In men, independent predictors of VT recurrence were the composite parameter of ES and multiple ICD therapies, presentation with incessant VT, severe MR, while independent predictors of mortality were age, LVEF, creatinine and previously implanted CRT.

Conclusion

According to our investigation, there are pronounced sex differences in predictors of recurrence and mortality following VT ablation.
Comparison of effectiveness and safety of high-power vs. conventional-power radiofrequency ablation for treatment of atrial fibrillation
Authors: Cui Penghui , Qu Yunpeng , Zhang Jichang , Wu Junduo , Zhang Jing , Shi Yongfeng , Liu Bin
Published: December 2022

Aim

To compare high-power (HP) vs. conventional-power (CP) radiofrequency ablation for atrial fibrillation (AF).

Methods

We retrospectively enrolled AF patients undergoing CP (30–40 W, 43 patients) or HP (50 W, 49 patients) radiofrequency ablation. Immediate pulmonary vein (PV) single-circle isolation, PV-ablation time, AF recurrence, AF recurrence-free survival, and complications were analyzed.

Results

Diabetes was more common in the CP group than in the HP group (27.91% vs. 10.20%, P = 0.029). The left PV single-circle isolation rate (62.79% vs. 65.31%), right PV single-circle isolation rate (48.84% vs. 53.06%), and bilateral PV single-circle isolation rate (32.56% vs. 38.78%; all P > 0.05) did not differ between the groups. Single-circle ablation times for the left PVs (12.79 ± 3.39 vs. 22.94 ± 6.39 min), right PVs (12.18 ± 3.46 vs. 20.67 ± 5.44 min), and all PVs (25.85 ± 6.04 vs. 45.66 ± 11.11 min; all P < 0.001) were shorter in the HP group. Atrial fibrillation recurrence within 3 months (13.95% vs. 18.37%), at 3 months (11.63% vs. 8.16%), and at 6 months after ablation (18.60% vs. 12.24%; all P > 0.05) was similar in both groups. Atrial fibrillation recurrence-free survival did not differ between the groups (Kaplan-Meier analysis). Cardiac rupture and pericardial tamponade did not occur in any patient. Pops occurred in 2 and 0 patients in the HP and CP groups, respectively (4.08% vs. 0.00%, P = 0.533).

Conclusion

High-power ablation improved operation time and efficiency without increasing complications.
Changes in postoperative opioid prescribing across three diverse healthcare systems, 2010–2020
Authors: Coquet Jean , Zammit Alban , Hajouji Oualid El , Humphreys Keith , Asch Steven M. , Osborne Thomas F. , Curtin Catherine M. , Hernandez-Boussard Tina
Published: December 2022

Objective

The opioid crisis brought scrutiny to opioid prescribing. Understanding how opioid prescribing patterns and corresponding patient outcomes changed during the epidemic is essential for future targeted policies. Many studies attempt to model trends in opioid prescriptions therefore understanding the temporal shift in opioid prescribing patterns across populations is necessary. This study characterized postoperative opioid prescribing patterns across different populations, 2010–2020.

Data Source

Administrative data from Veteran Health Administration (VHA), six Medicaid state programs and an Academic Medical Center (AMC).

Data extraction

Surgeries were identified using the Clinical Classifications Software.

Study Design

Trends in average daily discharge Morphine Milligram Equivalent (MME), postoperative pain and subsequent opioid prescription were compared using regression and likelihood ratio test statistics.

Principal Findings

The cohorts included 595,106 patients, with populations that varied considerably in demographics. Over the study period, MME decreased significantly at VHA (37.5–30.1; p = 0.002) and Medicaid (41.6–31.3; p = 0.019), and increased at AMC (36.9–41.7; p < 0.001). Persistent opioid users decreased after 2015 in VHA (p < 0.001) and Medicaid (p = 0.002) and increase at the AMC (p = 0.003), although a low rate was maintained. Average postoperative pain scores remained constant over the study period.

Conclusions

VHA and Medicaid programs decreased opioid prescribing over the past decade, with differing response times and rates. In 2020, these systems achieved comparable opioid prescribing patterns and outcomes despite having very different populations. Acknowledging and incorporating these temporal distribution shifts into data learning models is essential for robust and generalizable models.
Cushing’s syndrome is associated with altered adipokine profile
Authors: Dadej Daniela , Szczepanek-Parulska Ewelina , Wrotkowska Elżbieta , Ruchała Marek
Published: December 2022

Introduction

Adipokines are signaling molecules involved in the integration of metabolism. Changes in their concentrations were observed in obesity, metabolic syndrome, diabetes mellitus and cardiovascular diseases, as well as endocrine disorders. Cushing’s syndrome is associated with metabolic dysregulation, but the significance of adipokines in this entity and related complications is largely unknown. The aim of our study was to determine the concentrations of adipokines: fetuin A, fatty acid binding protein 4 (FABP4) and retinol binding protein 4 (RBP4) in Cushing’s syndrome and to assess their relation to established cardiovascular and diabetes risk markers.

Methods

We examined 21 subjects with Cushing’s syndrome and 24 healthy controls in a cross-sectional manner. Venous blood samples were analysed for adipokines, cortisol, adrenocorticotrophin, glucose, insulin, glycated haemoglobin (HbA1c), triglycerides, cholesterol fractions, thyrotropin and free thyroid hormones concentrations. Patients’ body mass index (BMI) was evaluated, homeostatic model assessment-insulin resistance and Systematic Coronary Risk Evaluation (SCORE) were calculated.

Results

We found that the concentration of fetuin A was lower, while FABP4 and RBP4 concentrations were higher in Cushing’s syndrome compared to controls [156.4 ± 60.0 µg/ml vs 260.7 ± 49.6 µg/ml; 79.8 (35.2-156.1) ng/ml vs 27.9 (17.1-36.7) ng/ml and 34 (30-37.7) mg/l vs 25.8 (23.6-27.7) mg/l, respectively]. Fetuin A correlated inversely, while FABP4 and RBP4 positively, with the concentrations of urinary free cortisol and adrenocorticotrophin. Fetuin A was positively related to LDL-cholesterol, and negatively to SCORE and HbA1c. FABP4 was associated positively with BMI, HbA1c and triglycerides, while RBP4 correlated positively with triglycerides and systolic blood pressure.

Conclusions

Adipokines’ concentrations change in hypercortisolism. Further research is needed to ascertain whether adipokines are involved in the development of metabolic complications accompanying Cushing’s syndrome or secondarily reflect metabolic dysregulation.
Voluntary wheel running alters markers of amyloid-beta precursor protein processing in an ovarian hormone depleted model
Authors: Mohammad Ahmad , Finch Michael S. , Sweezey-Munroe Jacob , MacPherson Rebecca E. K.
Published: December 2022

Introduction

Aberrant cleavage of the transmembrane protein, amyloid-beta precursor protein (ABPP), results in the overproduction of amyloid-beta (AB) peptides which can form senile plaques in the brain. These plaques can get lodged within synapses and disrupt neuronal communication ultimately leading to rampant neuron death. The rate-limiting enzyme in AB production is beta-site ABPP cleaving enzyme 1 (BACE1). In females, estrogen loss is associated with increases in AB and BACE1 content and activity. Exercise is known to have anti-amyloidogenic effects and may be able to alter BACE1 in cases of ovarian hormone depletion. This study aimed to examine the effects of physical activity on BACE1 in intact and ovariectomized female mice.

Methods

Female C57BL/6 mice (24 weeks old) underwent bilateral ovariectomy (OVX; n=20) or SHAM surgery (SHAM; n=20). Mice were assigned to one of four groups (n=10/group) for 8 weeks: (1) sham (SHAM), (2) sham with a wheel (SHAM VWR), (3) ovariectomized (OVX), or (4) ovariectomized with a wheel (OVX VWR).

Results

Novel object recognition testing demonstrated that OVX mice had a lower percentage of novel object investigation time compared to SHAM. OVX mice also had higher prefrontal cortex BACE1 activity compared to SHAM (p<0.0001), while the OVX+VWR activity was not different from SHAM.

Discussions

Our results demonstrate that voluntary wheel running in an ovariectomized model prevented increases in BACE1 activity, maintained memory recall, and may provide a method of slowing the progression of Alzheimer’s disease.
Systemic immune-inflammation index is associated with diabetic kidney disease in Type 2 diabetes mellitus patients: Evidence from NHANES 2011-2018
Authors: Guo Wencong , Song Yancheng , Sun Yan , Du Huasheng , Cai Yan , You Qingqing , Fu Haixia , Shao Leping
Published: December 2022

Objective

Diabetic kidney disease (DKD) is the most common chronic kidney disease (CKD) and has the highest prevalence of end-stage kidney disease (ESKD) globally, owing mostly to the rise in Type 2 diabetes mellitus (T2DM) correlated with obesity. Current research suggested that the immune response and inflammation may play a role in the pathophysiology of T2DM. The systemic immune-inflammation index (SII) is a novel and integrated inflammatory biomarker that has not yet been linked to DKD. We aimed to identify the potential relationship between SII and DKD.

Methods

In the National Health and Nutrition Examination Survey (NHANES) between 2011 and 2018, the current cross-sectional study was conducted among adults with T2DM. SII was calculated as the platelet count × neutrophil count/lymphocyte count. DKD was diagnosed with impaired glomerular filtration rate (< 60 mL/min/1.73 m2 assessed by using the Chronic Kidney Disease Epidemiology Collaboration algorithm), albuminuria (urine albumin to creatinine ratio ≥ 30 mg/g), or both in T2DM patients. To investigate the independent association between SII and DKD, weighted univariate and multivariable logistic regression analyses and subgroup analyses were performed.

Results

The study involved 3937 patients in total, of whom 1510 (38.4%) had DKD for the diagnosis. After adjustment for covariates, multivariable logistic regression revealed that a high SII level was associated with increased likelihood of DKD (OR = 1.42, 95% CI: 1.10-1.83, P = 0.01). Subgroup analyses and interaction tests revealed that age, gender, estimated glomerular filtration rate (eGFR), urine albumin-to-creatinine ratio (ACR), body mass index (BMI), hypertension, hyperlipidemia, anti-inflammation therapy (yes or no), metformin use (yes or no), and insulin use (yes or no) had no significant dependence on this positive relationship (all p for interaction >0.05).

Conclusions

Our results indicate that the higher SII level is associated with DKD in T2DM patients. The SII could be a cost-effective and straightforward approach to detecting DKD. This needs to be verified in further prospective investigations.
Metabolic syndrome and metastatic prostate cancer correlation study, a real-world study in a prostate cancer clinical research center, Xinjiang, China
Authors: An Hengqing , Ma Dongsheng , Mei Yujie , Wang Lulu , Maimaitiyiming Abudukeyoumu , Zhuo Tao , Aihaiti Renaguli , Bu Ke , Huang Xin , Zhang Kaige , Yao Miao , Ling Chenyang , Li Weizun , Tao Ning
Published: December 2022

Objective

The aim of this study was to investigate the relevance of metabolic syndrome (MetS) and metabolic scores to the occurrence, progression and prognosis of metastatic prostate cancer (mPCA), assessing the definition of the variables of metabolic syndrome, and the potential mechanisms of MetS and mPCA.

Methods

Data were obtained from the database of prostate cancer follow-up at the Urology Centre of the First Affiliated Hospital of Xinjiang Medical University (N=1303). After screening by inclusion and exclusion criteria, clinical data of 190 patients diagnosed with mPCA by pathology and imaging from January 2010 to August 2021 were finally included, including 111 cases in the MetS group and 79 cases in the Non-MetS group.

Results

The MetS group was higher than the Non-MetS group: T stage, Gleasson score, initial PSA, tumor load, PSA after 7 months of ADT (P<0.05),with a shorter time to progression to CRPC stage(P<0.05)[where the time to progression to CRPC was relatively shorter in the high metabolic score subgroup of the MetS group than in the low subgroup (P<0.05)].Median survival time was significantly shorter in the MetS group than in the Non-MetS group (P<0.05),and there was a correlation with metabolic score, with the higher metabolic score subgroup having a lower survival time than the lower metabolic score subgroup (P<0.05).

Conclusion

Those with mPCA combined with MetS had lower PSA remission rates, more aggressive tumors, shorter time to progression to CRPC and shorter median survival times than those with mPCA without MetS.Tumour progression and metabolic score showed a positive correlation, predicting that MetS may promote the progression of mPCA, suggesting that MetS may be a risk factor affecting the prognosis of mPCA.
Cost projection of combined cycle power plants equipped with post-combustion carbon capture
Authors: Díaz-Herrera Pablo R. , Romero-Martínez Ascención , Ascanio Gabriel
Published: December 2022

This work aims to analyze the cost projection of natural gas combined cycles (NGCC) with post-combustion carbon capture (PCC) technology for two promising power plant configurations, namely: conventional NGCC and exhaust gas recirculation (EGR). A thermo-economic analysis was performed considering the second-law efficiency for the CO2 separation process (η2nd) and the CO2 avoided cost (CAC) as main indicators. Several critical variables influencing the overall cost of the plant were considered, such as the work required for solvent regeneration (Wregen), technology maturity, learning rate, carbon tax credit, and carbon capture level (85%, 90%, and 95%). A hybrid method combining engineering-economic and experience-curve approaches was used to estimate the costs of Nth-of-a-kind (NOAK) plants. The results showed that NOAK plants could potentially decrease the levelized cost of electricity (LCOE) by 10%–11%, and the CAC by 21%–23%, compared with first-of-a-kind (FOAK) plants. EGR at 85% capture level showed the best economic performance among the study cases evaluated, with a CAC equal to $102.5/tCO2. At an 85% capture level, the CAC for the conventional NOAK NGCC plant is $104.1/tCO2; maintaining this same CAC value, the carbon capture rate could increase from 85% to 90.8% if EGR configuration is implemented. Finally, from the findings of this research, it is concluded that the CAC for NOAK plants is expected to be, in the best scenario, as low as $69/tCO2. Therefore, these plants might need at least a similar carbon tax value to ensure their operation during their useful life.
Diet and disturbance: Seaside Sparrow resource use driven by oiling and Hurricane Isaac
Authors: Snider Allison M. , Bonisoli-Alquati Andrea , Pérez-Umphrey Anna A. , Woltmann Stefan , Stouffer Philip C , Taylor Sabrina S.
Published: December 2022

The 2010 Deepwater Horizon (DWH) disaster led to extensive oil deposition in Louisiana’s coastal wetlands, followed two years later by Hurricane Isaac. These disturbances led to changes in saltmarsh invertebrate communities, potentially affecting higher-level predators and the saltmarsh food web. Seaside Sparrows (Ammospiza maritima) are ubiquitous, year-round residents of the coastal saltmarsh affected by the DWH spill, where they consume diverse invertebrates and may be considered an indicator species for the ecosystem’s integrity. We used DNA metabarcoding to evaluate prey consumed by Seaside Sparrows to understand how sparrows responded to residual contamination from the DWH oil spill and ecosystem disturbance caused by Hurricane Isaac. To do so, we evaluated metrics of diet (prey richness, diversity, overall diet composition) and resource use (total niche width, individual specialization) from 2011 to 2017 on oiled, unoiled, and reference sites. We found that while diet composition varied across years and site type, Hurricane Isaac had an even greater effect on the richness and diversity of prey consumed. Resource use—as measured by the total niche width of the populations and degree of individual specialization—was most stable on unoiled sites compared to unoiled and reference sites. Finally, we analyzed resource use for each combination of site type and year (i.e.: “2014 oiled sites”), which indicated a strong correlation between individual specialization and total niche width: as total niche width increased, individuals became more specialized, following the predictions of the Niche Variation Hypothesis.
Urban green roofs can support a diversity of parasitoid wasps
Authors: Diethelm Aramee C. , Masta Susan E.
Published: December 2022

Green roofs are often installed atop buildings to provide ecological services such as mitigating storm water runoff and cooling air within urban heat islands. We found that green roofs in Portland, Oregon, also can support biodiversity, including a diverse assemblage of parasitoid wasps, with 20 morphospecies from 10 families present on the four roofs we surveyed. The roofs with greater plant diversity and structural complexity harbored comparatively more parasitoid morphospecies than the structurally simpler Sedum-dominated roofs. The oldest green roof supported much greater diversity than the younger roofs, including a comparably planted roof three times its size. Parasitoid wasps from the Hymenopteran families we found are high-trophic-level organisms known to feed on a variety of arthropods, including many insects commonly considered to be pests in urban areas. We suggest that green roofs have the potential to provide an often-overlooked ecological service by supporting parasitoid wasps that can act as natural biological control agents.
Kalpra: A kernel approach for longitudinal pathway regression analysis integrating network information with an application to the longitudinal PsyCourse Study
Authors: Wendel Bernadette , Heidenreich Markus , Budde Monika , Heilbronner Maria , Oraki Kohshour Mojtaba , Papiol Sergi , Falkai Peter , Schulze Thomas G. , Heilbronner Urs , Bickeböller Heike
Published: December 2022

A popular approach to reduce the high dimensionality resulting from genome-wide association studies is to analyze a whole pathway in a single test for association with a phenotype. Kernel machine regression (KMR) is a highly flexible pathway analysis approach. Initially, KMR was developed to analyze a simple phenotype with just one measurement per individual. Recently, however, the investigation into the influence of genomic factors in the development of disease-related phenotypes across time (trajectories) has gained in importance. Thus, novel statistical approaches for KMR analyzing longitudinal data, i.e. several measurements at specific time points per individual are required. For longitudinal pathway analysis, we extend KMR to long-KMR using the estimation equivalence of KMR and linear mixed models. We include additional random effects to correct for the dependence structure. Moreover, within long-KMR we created a topology-based pathway analysis by combining this approach with a kernel including network information of the pathway. Most importantly, long-KMR not only allows for the investigation of the main genetic effect adjusting for time dependencies within an individual, but it also allows to test for the association of the pathway with the longitudinal course of the phenotype in the form of testing the genetic time-interaction effect. The approach is implemented as an R package, kalpra. Our simulation study demonstrates that the power of long-KMR exceeded that of another KMR method previously developed to analyze longitudinal data, while maintaining (slightly conservatively) the type I error. The network kernel improved the performance of long-KMR compared to the linear kernel. Considering different pathway densities, the power of the network kernel decreased with increasing pathway density. We applied long-KMR to cognitive data on executive function (Trail Making Test, part B) from the PsyCourse Study and 17 candidate pathways selected from Reactome. We identified seven nominally significant pathways.
The risk of various types of cardiovascular diseases in mutation positive familial hypercholesterolemia; a review
Authors: Hovland Anders , Mundal Liv J. , Veierød Marit B. , Holven Kirsten B. , Bogsrud Martin Prøven , Tell Grethe S. , Leren Trond P. , Retterstøl Kjetil
Published: December 2022

Familial hypercholesterolemia (FH) is a common, inherited disease characterized by high levels of low-density lipoprotein Cholesterol (LDL-C) from birth. Any diseases associated with increased LDL-C levels including atherosclerotic cardiovascular diseases (ASCVDs) would be expected to be overrepresented among FH patients. There are several clinical scoring systems aiming to diagnose FH, however; most individuals who meet the clinical criteria for a FH diagnosis do not have a mutation causing FH. In this review, we aim to summarize the literature on the risk for the various forms of ASCVD in subjects with a proven FH-mutation (FH+). We searched for studies on FH+ and cardiovascular diseases and also included our and other groups published papers on FH + on a wide range of cardiovascular and other diseases of the heart and vessels. FH + patients are at a markedly increased risk of a broad range of ASCVD. Acute myocardial infarction (AMI) is the most common in absolute numbers, but also aortic valve stenosis is by far associated with the highest excess risk. Per thousand patients, we observed 3.6 incident AMI per year compared to 1.9 incident aortic valve stenosis, however, standardized incidence ratio (SIR) for incident AMI was 2.3 compared to 7.9 for incident aortic valve stenosis. Further, occurrence of ischemic stroke seems not to be associated with increased risk in FH+. Clinicians should be aware of the excess risk of almost all kind of ASCVD in FH+, and the neutral risk of stroke need to be studied further in FH + patients.
Transcriptomic changes underlying glucocorticoid-induced suppression of milk production by dairy cows
Authors: Sadovnikova Anna , Garcia Sergio C. , Trott Josephine F. , Mathews Alice T. , Britton Monica T. , Durbin-Johnson Blythe P. , Hovey Russell C.
Published: December 2022

Milk production by dairy cows is sensitive to increased levels of stress hormones such as glucocorticoids (GC) that also regulate the transcription of several genes required for milk synthesis. Whereas previous studies identified that an exogenous GC such as dexamethasone (DEX) transiently suppresses milk yield in several species without any pronounced effect on milk protein or fat percentage, the mechanism underlying this effect has not been established. In this study we sought to establish changes within the mammary glands of non-pregnant dairy cows in their second lactation (n = 3–4; 648–838 kg) following a single dose of exogenous DEX. Changes in the udder were monitored by serial biopsy of alternating quarters, concurrent with quarter-level monitoring of milk yield and composition. Dexamethasone increased serum glucose levels from 12–36 h (p <0 .05), reduced milk yield from 12–48 h (p <0 .05), increased % milk protein content at 24 h post-DEX, and transiently decreased both milk lactose and α-lactalbumin content, while not altering the level of milk fat. After 72 h, all aspects of milk production had returned to pre-treatment levels. Transcriptomic changes in the mammary glands in response to DEX were identified by RNA sequencing followed by differential gene expression analysis. Coincident with the milk yield and composition changes was the differential expression of 519 and 320 genes at 12 and 24 h after DEX (adjusted p <0 .05), respectively, with the return of all gene expression to baseline levels by 72 h. Among the transcriptomic changes in response to DEX, there was notable downregulation of elements in the lactose synthesis pathway, specifically AQP3, GALE and LALBA (α-lactalbumin) at 12 h, and sustained downregulation of LALBA at 24 h. One gene in the pathway, UGP2, was upregulated at 12–24 h post-DEX. This work supports the hypothesis that there is a direct relationship between the response to DEX and the concurrent suppression of milk yield due to the reduced synthesis of α-lactalbumin and lactose by the mammary epithelium. The ability of glucocorticoids to modulate the homeorrhetic requirements for glucose during stressful states concurrent with immune activation bears significance for dairy animals as well as a broad range of lactating mammals.
Establishment of an efficient regeneration and Agrobacterium transformation system in mature embryos of calla lily (Zantedeschia spp.)
Authors: Sun Xuan , Wang Yi , Yang Tuo , Wang Xue , Wang Huanxiao , Wang Di , Liu Hongyan , Wang Xian , Zhang Guojun , Wei Zunzheng
Published: December 2022

Calla lily (Zantedeschia spp.) have great aesthetic value due to their spathe-like appearance and richness of coloration. However, embryonic callus regeneration is absent from its current regeneration mechanism. As a result, constructing an adequate and stable genetic transformation system is hampered, severely hindering breeding efforts. In this research, the callus induction effectiveness of calla lily seed embryos of various maturities was evaluated. The findings indicated that mature seed embryos were more suitable for in vitro regeneration. Using orthogonal design experiments, the primary elements influencing in vitro regeneration, such as plant growth regulators, genotypes, and nanoscale materials, which was emergent uses for in vitro regeneration, were investigated. The findings indicated that MS supplemented with 6-BA 2 mg/L and NAA 0.1 mg/L was the optimal medium for callus induction (CIM); the germination medium (GM) was MS supplemented with 6-BA 2 mg/L NAA 0.2 mg/L and 1 mg/L CNTs, and the rooting medium (RM) was MS supplemented with 6-BA 2 mg/L NAA 0.7 mg/L and 2 mg/L CNTs. This allowed us to verify, in principle, that the Agrobacterium tumefaciens-mediated genetic transformation system operates under optimal circumstances using the GUS reporter gene. Here, we developed a seed embryo-based genetic transformation regeneration system, which set the stage for future attempts to create new calla lily varieties.
Genetic engineering of pigs for xenotransplantation to overcome immune rejection and physiological incompatibilities: The first clinical steps
Authors: Lei Tiantian , Chen Lin , Wang Kejing , Du Suya , Gonelle-Gispert Carmen , Wang Yi , Buhler Leo H.
Published: December 2022

Xenotransplantation has the potential to solve the shortfall of human organ donors. Genetically modified pigs have been considered as potential animal donors for human xenotransplantation and have been widely used in preclinical research. The genetic modifications aim to prevent the major species-specific barriers, which include humoral and cellular immune responses, and physiological incompatibilities such as complement and coagulation dysfunctions. Genetically modified pigs can be created by deleting several pig genes related to the synthesis of various pig specific antigens or by inserting human complement‐ and coagulation‐regulatory transgenes. Finally, in order to reduce the risk of infection, genes related to porcine endogenous retroviruses can be knocked down. In this review, we focus on genetically modified pigs and comprehensively summarize the immunological mechanism of xenograft rejection and recent progress in preclinical and clinical studies. Overall, both genetically engineered pig-based xenografts and technological breakthroughs in the biomedical field provide a promising foundation for pig-to-human xenotransplantation in the future.
Circulating methylation level of HTR2A is associated with inflammation and disease activity in rheumatoid arthritis
Authors: Zhao Jianan , Xu Lingxia , Chang Cen , Jiang Ping , Wei Kai , Shi Yiming , Xu Linshuai , Zheng Yixin , Shan Yu , Bian Yanqin , Li Li , Guo Shicheng , Schrodi Steven J. , Wang Rongsheng , He Dongyi
Published: December 2022

Objectives

HTR2A is previously identified as a susceptibility gene for rheumatoid arthritis (RA). In this study, we performed the association analysis between DNA methylation of HTR2A with RA within peripheral blood samples.

Methods

We enrolled peripheral blood samples from 235 patients with RA, 30 osteoarthritis (OA) patients, and 30 healthy controls. The DNA methylation levels of about 218 bp from chr13: 46898190 to chr13: 46897973 (GRCh38/hg38) around HTR2A cg15692052 from patients were analyzed by targeted methylation sequencing.

Results

We measured methylation status for 7 CpGs in the promoter region of HTR2A and obseved overall methylation status are signficantly increased in RA compared with normal inviduals (FDR= 9.05 x 10-5). The average cg15692052 methylation levels (methylation score) showed a positive correlation with CRP (r=0.15, P=0.023). Compared with the OA group or HC group, the proportion of haplotypes CCCCCCC (FDR=0.02 and 2.81 x 10-6) is signficantly increased while TTTTTCC (FDR =0.01) and TTTTTTT(FDR =6.92 x 10-3) are significantly decreased in RA. We find methylation haplotypes combining with RF and CCP could signficantly enhance the performance of the diagnosing RA and its comorbidities (hypertension, interstitial lung disease, and osteoporosis), especially in interstitial lung disease.

Conclusions

In our study, we found signficant hypermethylation of promoter region of HTR2A which indicates the potential clinical diagnostic role in rheumatoid arthritis.
Establishment of the immunological self in juvenile Patiria pectinifera post-metamorphosis
Authors: Taguchi Mizuki , Minakata Kota , Tame Akihiro , Furukawa Ryohei
Published: December 2022

Ontogeny of the immune system is a fundamental immunology issue. One indicator of immune system maturation is the establishment of the immunological self, which describes the ability of the immune system to distinguish allogeneic individuals (allorecognition ability). However, the timing of immune system maturation during invertebrate ontogeny is poorly understood. In the sea star Patiria pectinifera, cells that have dissociated from the embryos and larvae are able to reconstruct larvae. This reconstruction phenomenon is possible because of a lack of allorecognition capability in the larval immune system, which facilitates the formation of an allogeneic chimera. In this study, we revealed that the adult immune cells of P. pectinifera (coelomocytes) have allorecognition ability. Based on a hypothesis that allorecognition ability is acquired before and after metamorphosis, we conducted detailed morphological observations and survival time analysis of metamorphosis-induced chimeric larvae. The results showed that all allogeneic chimeras died within approximately two weeks to one month of reaching the juvenile stage. In these chimeras, the majority of the epidermal cell layer was lost and the mesenchymal region expanded, but cell death appeared enhanced in the digestive tract. These results indicate that the immunological self of P. pectinifera is established post-metamorphosis during the juvenile stage. This is the first study to identify the timing of immune system maturation during echinodermal ontogenesis. As well as establishing P. pectinifera as an excellent model for studies on self- and non-self-recognition, this study enhances our understanding of the ontogeny of the immune system in invertebrates.
Berberine a traditional Chinese drug repurposing: Its actions in inflammation-associated ulcerative colitis and cancer therapy
Authors: Zhu Cuipeng , Li Kaiqi , Peng Xiao-Xu , Yao Tong-Jia , Wang Zi-Yu , Hu Ping , Cai Demin , Liu Hao-Yu
Published: December 2022

Berberine (BBR), an isoquinoline alkaloid extracted from Coptidis Rhizoma, has a long history of treating dysentery in the clinic. Over the past two decades, the polytrophic, pharmacological, and biochemical properties of BBR have been intensively studied. The key functions of BBR, including anti-inflammation, antibacterial, antioxidant, anti-obesity, and even antitumor, have been discovered. However, the underlying mechanisms of BBR-mediated regulation still need to be explored. Given that BBR is also a natural nutrition supplement, the modulatory effects of BBR on nutritional immune responses have attracted more attention from investigators. In this mini-review, we summarized the latest achievements of BBR on inflammation, gut microbes, macrophage polarization, and immune responses associated with their possible tools in the pathogenesis and therapy of ulcerative colitis and cancer in recent 5 years. We also discuss the therapeutic efficacy and anti-inflammatory actions of BBR to benefit future clinical applications.
Exploring the key factors affecting the seasonal variation of phytoplankton in the coastal Yellow Sea
Authors: Wang Yingzhe , Liu Ying , Chen Xueyang , Cui Zhengguo , Qu Keming , Wei Yuqiu
Published: December 2022

Marine phytoplankton play crucial roles in the ocean’s biological pump and have great impacts on global biogeochemical cycles, yet the knowledge of environmental variables controlling their seasonal dynamics needs to be improved further, especially in the coastal ecosystems. In order to explore the determinants affecting the seasonal variation of phytoplankton, here we conducted three surveys during spring, summer and autumn along the coastal Yellow Sea. Among the phytoplankton community, 49 species of diatoms and 9 species of dinoflagellates were observed in spring, 63 species of diatoms and 10 species of dinoflagellates in summer, and 62 species of diatoms and 11 species of dinoflagellates in autumn. These results thus suggested that there were obvious differences in the number of species across the three seasons, of which diatoms were the most diverse group, followed by dinoflagellates. Additionally, diatoms were the most dominant species of the phytoplankton community and varied largely during different seasons. According to the redundancy analysis, the abundance of phytoplankton community was mainly related to water temperature and dissolved inorganic nitrogen (DIN) during the three seasons, indicating that water temperature and DIN could be the key factors controlling the seasonal variability of phytoplankton community along the coastal Yellow Sea. Also, significant correlations were observed between phytoplankton abundance and heavy metals Zn, As, and Hg during the three seasons, suggesting that these metals also had potential influences on the seasonal dynamics of phytoplankton community in the coastal Yellow Sea.
Climate-modulated range expansion of reef-building coral communities off southeast Florida during the late Holocene
Authors: Modys Alexander B. , Oleinik Anton , Mortlock Richard A. , Toth Lauren T. , Precht William F.
Published: December 2022

The Holocene reefs off southeast Florida provide unique insights into the biogeographical and ecological response of western Atlantic coral reefs to past climate change that can be used to evaluate future climate impacts. However, previous studies have focused on millennial-scale change during the stable mid-Holocene, making it difficult to make inferences about the impact of shorter-term variability that is relevant to modern climate warming. Using uranium-series dating of newly discovered subfossil coral rubble deposits, we establish a new high-resolution record of coral community development off southeast Florida during a period of variable climate in the late Holocene. Our results indicate that coral communities dominated by reef-building Acropora palmata and Orbicella spp. persisted in the nearshore environments off southeast Florida ~75 km north of their primary historical ranges between ~3500 and 1800 years before present. This timing coincides with regional warming at the northern extent of the Atlantic Warm Pool, suggesting a likely link between regional oceanographic climate and the expansion of cold-sensitive reef-building coral communities to the high-latitude reefs off southeast Florida. These findings not only extend the record of coral-reef development in southeast Florida into the late Holocene, but they also have important implications for future range expansions of reef-building coral communities in response to modern climate change.
Phase field simulation of microstructure evolution and process optimization during homogenization of additively manufactured Inconel 718 alloy
Authors: Chen Miaomiao , Du Qiang , Shi Renhai , Fu Huadong , Liu Zhuangzhuang , Xie Jianxin
Published: December 2022

An in-depth and integral understanding of the microstructural evolution during thermomechanical process (TMP) is of great significance to optimize the manufactural process for high-quality components via additive manufacturing. The solidified microstructure model of Inconel 718 alloy fabricated via laser powder bed fusion (L-PBF) is established by multiphase field model firstly. Furthermore, the microstructural evolution during homogenization process is simulated and optimized in this study. Phase field simulation results show that the concentration gradient of Nb along the radius of the cellular substructure decreases from the initial 1.217 wt% to 0.001 wt%, and 67% area fraction of the Laves phase dissolves at the homogenization time of 0.5 h, which have achieved the homogenization purpose. The experimental results show that the average grain size decreases from 9.4 μm to 5.9 μm at the homogenization time from 1.5 h (the standard AMS 5383) to 0.5 h, which resulted in the increase of yield strength and tensile strength of the aged alloy by 14% and 6%, respectively. This research can provide guidance and reference for the microstructural control as well as the TMP parameters design of the additive manufactured alloys.