bluuebunny/crossref_metadata_2025 huggingface dataset:
Simulation of Mouldboard Plough Soil Cutting Based on Smooth Particle Hydrodynamics Method and FEM–SPH Coupling Method
Authors: Jin Xiaoming , Ma Fangping , Wang Di , Zhu Zhengtao
Published: September 2023

In the field of agricultural machinery, various empirical field tests are performed to measure the tillage force for precision tillage. However, the field test performance is costly and time-consuming, and there are many constraints on weather and field soil conditions; the utilization of simulation studies is required to overcome these shortcomings. As a result, the SPH method and the coupled FEM-SPH method are used in this paper to investigate the mouldboard plough–soil interaction. In this paper, the finite element software LS-DYNA was used to build the SPH model and the FEM-SPH coupling model of soil cutting, as well as to investigate the change in cutting resistance during the soil cutting process. The simulation results are compared with those of the experiments, and the curves of the simulation and experiment are in good agreement, which verifies the reliability of the model. The validated simulation model was used to investigate the effects of the cutting speed, depth of cut, inclination angle, and lifting angle of the mouldboard plough on cutting resistance. The simulation studies show that the SPH model takes 5 h and 2 min to compute, while the FEM-SPH coupled model takes 38 min; obviously, the computational efficiency of the FEM-SPH coupled model is higher. The relative errors between the SPH model and the experiment are 2.17% and 3.65%, respectively. The relative errors between the FEM-SPH coupled model and the experiment are 5.96% and 10.67%, respectively. Obviously, the SPH model has a higher computational accuracy. The average cutting resistances predicted by the SPH model and the FEM-SPH coupled model, respectively, were 349.48 N and 306.25 N; these resistances are useful for precision tillage. The cutting resistance increases with the increase in cutting speed and is quadratic; the cutting resistance increases with the increase in cutting depth and is quadratic; the horizontal cutting resistance and the combined cutting resistance increase with the increase in inclination angle, while the vertical cutting resistance remains essentially constant with the increase in inclination angle; the horizontal cutting resistance and combined cutting resistance increase as the lifting angle increases, while the vertical cutting resistance decreases as the lifting angle increases.
Contributions of Ammonia-Oxidizing Archaea and Bacteria to Nitrous Oxide Production in Intensive Greenhouse Vegetable Fields
Authors: Dong Yubing , Xu Xintong , Zhang Junqian , Jiao Ying , Wang Bingxue , Wang Chenyuan , Xiong Zhengqin
Published: September 2023

With excessive nitrogen (N) input, high nitrous oxide (N2O) emissions are frequently observed in greenhouse vegetable fields. We hypothesized that the underlying production mechanisms can be derived across a wide selection of vegetable fields in the middle and lower reaches of the Yangtze River. Thus, we investigated the emission characteristics and relative contributions of ammonia-oxidizing archaea (AOA) and bacteria (AOB) and other microbial processes to the N2O production from five long-term greenhouse vegetable fields through an incubation experiment with combined inhibition methods. The results showed that the ammonia oxidation process is the dominant contributor to N2O production at all five sites, accounting for 88–97% of the total N2O emissions. Regardless of acidic, neutral, or alkaline soil, AOA-driven N2O emission rates were consistently higher than AOB-driven N2O emission rates. Both AOA-driven and AOB-driven N2O emissions exhibited positive correlations with soil pH, with significant increases in soil N2O production associated with high pH levels. Therefore, general production mechanisms were derived, such that more attention should be paid to AOA-driven N2O emissions and to vegetable soils with a relatively high pH in the middle and lower reaches of the Yangtze River.
Modeling the Budbreak in Peaches: A Basic Approach Using Chill and Heat Accumulation
Authors: Cifuentes-Carvajal Adriana , Chaves-Córdoba Bernardo , Vinson Edgar , Coneva Elina D. , Chavez Dario , Salazar-Gutiérrez Melba R.
Published: September 2023

Phenological shifts in peaches have been observed over the last few years due to the fluctuation of the seasonal climate conditions experienced during dormancy, affecting orchard management practices and influencing production and harvest dates. This study aimed to model the vegetative and floral budbreak of selected peach cultivars. Three peach cultivars, including “Rubyprince”, “Harvester”, and “Red Globe”, were considered in this study based on the representation of the early, early-mid, and mid-seasons. The prediction of the budbreak in peaches was assessed using different models that integrate the combination of chill and heat requirements. Models used include the Weinberger model, the modified Weinberger model, Utah, the dynamic model, and the growing degree model. The accumulation of chill varies according to the season evaluated. A model that considers both chill and heat accumulation is presented for each cultivar. Budbreak as an indicator of dormancy completion was established for each cultivar. The outcome of this study is to determine the amount of chilling accumulation and thermal time required to mark the beginning of the budbreak in selected cultivars with a model that predicts the duration of the dormancy. These results are valuable information that can be used for crop management practices and support the mitigation of cold damage during this critical period of crop development.
Evaluation of Tulasnella and Ceratobasidium as Biocontrol Agents of Fusarium Wilt on Vanilla planifolia
Authors: Manrique-Barros Santiago , Flanagan Nicola S. , Ramírez-Bejarano Erika , Mosquera-Espinosa Ana T.
Published: September 2023

Fusarium wilt, caused by the fungus Fusarium oxysporum f. sp. vanillae (Fov), is a disease that results in significant losses in commercial vanilla production. The genera Ceratobasidium (Ceratobasidiaceae) and Tulasnella (Tulasnellaceae), which are often reported as mutualistic symbionts in orchids, belong to the form genus Rhizoctonia, a paraphyletic group of fungi with potential for pathogen biocontrol. We assayed the antagonistic properties of the form genus Rhizoctonia from the roots of neotropical orchids: two Tulasnella spp. isolates (Bv3 and Er1) and one Ceratobasidium sp. (Er19). In a dual culture, we found that form genus Rhizoctonia isolates can generate a biocontrol effect against Fusarium through the mechanisms of antibiosis and competition for space and nutrients. On histological observations, orchid root endophytes also demonstrated potential for mutualistic symbiosis development by establishing themselves on the surface and within the root tissue of Vanilla planifolia accessions multiplied in vitro (NSF021 and NSF092). However, in plant assays, the form genus Rhizoctonia isolates did not reduce symptom expression or disease development due to infection by Fov in the host. These results contribute to the knowledge of the interactions between tropical orchids and their microbiota and demonstrate the need for multidisciplinary studies for the implementation of integrated management strategies for Fusarium disease in commercial systems.
Layered-Strip Fertilization Improves Nitrogen Use Efficiency by Enhancing Absorption and Suppressing Loss of Urea Nitrogen
Authors: Wu Hongliang , Wang Luming , Liu Xiuping , Li Qiang , Lu Changai , Dong Wenxu
Published: September 2023

Appropriate deep application of fertilizer is the key basis for improving nitrogen use efficiency (NUE). However, the effects of different deep application methods and fertilizer types on nutrient migration, NUE and biomass in wheat season are unclear. Therefore, in this study, a barrel planting test with multilayer fertilization (15N labeled urea (U) and coated urea (CU)) was conducted in a long-term positioning trial of winter wheat in the North China Plain (NCP). We quantified the migration of fertilizer N (Ndff) in soil–plant–atmosphere and its effects on wheat biomass and NUE based on surface (Usur, CUsur), layered-strip (Ustr, CUstr) and layered-mix fertilization (Umix, CUmix) of U and CU. Compared with surface fertilization, the concentration of mineral N in root zone (0–40 cm) was increased by Ustr and Umix (8.6–50.3%), and the concentration of ammonium N was decreased by CUstr and CUmix (49.6–76.0%), but there was no change in the nitrate N. The biomass and total N absorption of wheat tissues (straw and root) were increased by 12.3–38.9% under Ustr and CUstr. Meanwhile, the distribution of Ndff in the 0–10 cm soil was decreased under Ustr and CUstr, but it was increased in the 10–30 cm soil, thereby promoting the absorption of Ndff in wheat tissues by 12.3–28.7%. The rates of absorption and loss of Ndff were the highest (57.6–58.5%) and the lowest (4.5%) under Ustr and CUstr, respectively, compared with other treatments. Consequently, layered-strip fertilization optimized the migration and utilization of Ndff within the soil–plant–atmosphere system. This approach equalized distribution, enhanced absorption and minimized losses of Ndff, resulting in an increase in NUE by 9.6–16.7%. Under the same treatment, CU was more suitable for crop nutrient requirements than U, which was more conducive to the improvement of NUE. Our findings will provide a scientific basis for the precise directional fertilization of winter wheat in the NCP.
Regional-Scale Virtual Nitrogen, Phosphorus, and Potassium Factors of Potato Production in China
Authors: Fang Xuejuan , Zhong Dongliang , Zhou Weijun , Alami Mohammad Jawad , Cui Shenghui , Gao Bing , Huang Wei
Published: September 2023

Improving yield in potato production with minimal environmental impact is of great significance for China’s potato staple food policy. Previous research has been limited by the absence of regional-scale parameters to evaluate the environmental costs of regional potato production. To address this gap, we utilized the input–output analysis method to offer a thorough estimation of nitrogen (N), phosphorus (P), and potassium (K) inputs and outputs in the potato production stage at a regional scale, leveraging a meta-analysis dataset from plenty of the literature. On this basis, we calculated the virtual N, P, and K factors (VNFs, VPFs, and VKFs) for different potato production regions, under both conventional and optimal management practices. China’s potato production suffered from excessive N and P inputs, while K inputs remained insufficient. Significant spatial heterogeneities were observed for the VNFs, VPFs, and VKFs across different potato production regions. Northeast China and northwest China emerged as the most suitable potato cultivation regions because they demonstrated high potato yields with relatively low inputs and, consequently, lower VNFs and VPFs. Southwest China was the most vital region where targeted efforts could lead to reducing VNF and VPF, thus significantly mitigating environmental N and P losses. In addition to reducing fertilizer inputs, site-specific and whole optimization measures are proposed to lower the environmental costs and promote the sustainable development of potato production.
The Impact of Bud Load on Berry Quality, Yield, and Cluster Compactness in H4 Strain Grapevines
Authors: Al-Saif Adel M. , Fahmy Moustafa A. , Baghdady Galal A. , El-Razik Ahmed M. Abd , Kabsha Elbaz A. , Farouk Mohammed H. , Hamdy Ashraf E.
Published: September 2023

The Thompson Seedless (Sultanina) seedless variety of grapes is an important crop in Egypt, both for local consumption and export. In recent years, the H4 strain of this grape variety has gained popularity due to its high productivity. However, a drawback of this strain is that the grape clusters become densely packed, resulting in small berries and reduced overall quality. A study was conducted to investigate the impact of pruning severity and bud load on the growth, yield, and quality of H4 grapes. The study included several different treatments, namely T1 Control: (10 canes × 12 buds), T2: (8 canes × 6 buds), T3: (8 canes × 8 buds), T4: (8 canes × 10 buds), T5: (8 canes × 12 buds), T6: (6 canes × 13 buds), T7: (8 canes × 13 buds), T8: (10 canes × 13 buds), and T9: (12 canes × 13 buds). The behavior of the buds, vegetative growth, yield, and quality of the grapes were analyzed. The results showed that pruning of the H4 strain with either 8 canes and 10–12 buds per cane, or 6 canes with 13 buds, produced the best results in terms of managing excessive fruit production, achieving a balance between vegetative growth and yield, and improving the physical and chemical characteristics of the grape clusters and berries. Overall, maintaining 8 canes with 10–12 buds per cane or 6 canes with 13 buds is recommended for obtaining maximum crop yield and quality.
Soil Habitats Are Affected by Fungal Waste Recycling on Farmland in Agro-Pastoral Ecotone in Northern China
Authors: Zhao Feiyan , Shi Shiling , Meng Ruibing , Ma Ze , Meng Zhongju
Published: September 2023

As part of the ecological barrier and an essential element of food security, the agro-pastoral ecotone is vital in northern China. Since soil fertility in northern China is low due to frequent surface disturbances, it is necessary to improve the properties of the soil. This study aims to examine the impact of fungal residue return on soil properties based on six treatments (CK: 0 kg/40 m2; R3: 90 kg/40 m2; R5: 150 kg/40 m2; R7: 210 kg/40 m2; R9: 270 kg/40 m2; R11: 330 kg/40 m2;) of fungal residue return concentration experimental data from 0 to 30 cm soil depth. The results showed that the effect of fungal residue returning on soil habits was greater at 0–10 cm of the surface layer. The bulk density can be reduced to 25.83% of CK, and water content can be increased up to 26.26%. Adding fungal residue to the field led to a greater increase in soil parameters (SOM and AP), and this characteristic effect continued as the return concentration increased. The number of soil bacteria and actinomycetes remained stable, and the amount of fungi was at its lowest. Compared with CK, the number of bacteria, fungi, and actinomycetes increased by 1.94 times, 1.46 times, and 1.71 times, respectively. After the residue was returned to the field, AK had the strongest correlation with other factors (p < 0.01), and microorganism and enzyme activities were strongly correlated (p < 0.01). In conclusion, this study presents a new method of resource utilization of downstream wastes in the food industry while simultaneously providing natural, pollution-free improvements to the soil, which is very beneficial to increasing crop yield.
Description of Twenty-Nine Animal Hoarding Cases in Italy: The Impact on Animal Welfare
Authors: Sacchettino Luigi , Gatta Claudia , Giuliano Viviana Orsola , Bellini Francesca , Liverini Alessia , Ciani Francesca , Avallone Luigi , d’Angelo Danila , Napolitano Francesco
Published: September 2023

The hoarding of animals is a psychiatric disease, characterized by a compulsive collection of animals, with a relevant impact upon the care and welfare of animals, as well as on human society. In Italy, there are neither substantial reports nor information shared about such a phenomenon, making it difficult to draw a clear picture of the hoarder profile. Therefore, in the present work, we sought to detail 29 cases of animal accumulators in Italy, who lived within two areas of the Lazio region, and accumulated a total of 1080 animals from 2019 to 2022. In line with other international studies, we observed a prevalence of middle-aged (in their fifties) women, who lived mainly alone in a high level of social and health degradation. Most of the hoarded animals exhibited severe signs of dehydration and malnutrition, muscle hypotrophy, dermatological injuries, and behavioral disorders. Animal hoarding is not yet fully understood nor recognized as a psychosocial disorder, although it produces a deep suffering for the hoarder themselves, as well as corresponding family members, and the animals accumulated. Therefore, given the crucial impact of animal hoarding upon human and animal welfare, cross-cultural networks aimed at properly raising awareness of the problem could be established.
Selected Acoustic Frequencies Have a Positive Impact on Behavioural and Physiological Welfare Indicators in Thoroughbred Racehorses
Authors: Gueguen Léa , Henry Séverine , Delbos Maëlle , Lemasson Alban , Hausberger Martine
Published: September 2023

(1) Background: Since antiquity, it is considered that sounds influence human emotional states and health. Acoustic enrichment has also been proposed for domestic animals. However, in both humans and animals, effects vary according to the type of sound. Human studies suggest that frequencies, more than melodies, play a key role. Low and high frequencies, music tuning frequency and even EEG slow waves used for ‘neurofeedback’ produce effects. (2) Methods: We tested the possible impact of such pure frequencies on racehorses’ behavior and physiology. A commercial non-audible acoustic stimulus, composed of an array of the above-mentioned frequencies, was broadcasted twice daily and for three weeks to 12 thoroughbred horses in their home stall. (3) Results: The results show a decrease in stereotypic behaviors and other indicators such as yawning or vacuum chewing, an increase in the time spent in recumbent resting and foraging, and better hematological measures during and after the playback phase for 4 of the 10 physiological parameters measured. (4) Conclusions: These results open new lines of research on possible ways of alleviating the stress related to housing and training conditions in racehorses and of improving physical recovery.
Variations in the Intestinal Microbiota of the Chinese Soft-Shelled Turtle (Trionyx sinensis) between Greenhouse and Pond Aquaculture
Authors: Liu Naicheng , Zhang Peng , Xue Mingyang , Xiao Zidong , Zhang Mengjie , Meng Yan , Fan Yuding , Qiu Junqiang , Zhang Qinghua , Zhou Yong
Published: September 2023

The microbial community structure in aquaculture water plays an important role in the intestinal microbial diversity of aquatic animals. The Chinese soft-shelled turtle (SST) (Trionyx sinensis) is an important aquaculture species of high economic value in the Asia-Pacific region. An intuitive understanding of the microbial diversity and abundances of SST aquaculture is crucial for comprehending these ecosystems. Herein, the evolutionary characteristics of the bacterial communities in the SST and its aquaculture water systems were investigated using Illumina MiSeq sequencing. This experiment sampled nine SSTs from a pond outside a greenhouse and was repeated three times. The sequencing results revealed significant differences in the microflora composition at the phylum and genus levels in both the intestine and aquaculture water of the SSTs in the greenhouse and pond aquaculture environments. A total of 1039 genera belonging to 65 phyla were identified. At the phylum level, the relative abundances of Chloroflexi (24%), Acidobacteria (5%), and Nitrospira (3%) were higher in the greenhouse water than in the pond water. The relative abundances of Bacteroidetes (35%), Actinobacteria (8%), and Cyanobacteria (4%) were higher in the pond water than in the greenhouse water. The intestinal microorganisms in the SSTs experienced significant changes after the SSTs were transferred from a greenhouse culture to a pond culture environment for 28 days. After the SSTs were cultured in the ponds, we observed decreases in the relative abundances of Actinobacteria (39% to 25%), Cyanobacteria (24% to 0.8%), Chlorobacteria (9% to 3%), and Firmicutes (5.5% to 0.8%. However, we observed increases in the relative abundances of Bacteroidetes (2% to 35%) and Acidobacteria (0.3% to 25%). These results showed that the bacterial diversity and richness compositions in the intestinal tract and aquaculture water were the same. However, the relative abundances of bacterial communities varied. The results of this study are of great significance in understanding how the environment affects SST cultures. These data may provide valuable instructions for Chinese soft-shelled turtle aquaculture management.
Supplementation of Thymoquinone Nanoparticles to Semen Extender Boosts Cryotolerance and Fertilizing Ability of Buffalo Bull Spermatozoa
Authors: Khalil Wael A. , Hassan Mahmoud A. E. , El-Harairy Mostafa A. , Abdelnour Sameh A.
Published: September 2023

Thymoquinone nanoparticles (TQNPs) are broadly utilized in numerous pharmaceutical applications. In the present study, we tested the effects of TQNP supplementation on sperm quality and kinematics, acrosome exocytosis, oxidative biomarkers, apoptosis-like and morphological changes of frozen–thawed buffalo sperm, as well as the fertilizing capacity. Semen was collected from buffalo bulls, diluted (1:10; semen/extender), and divided into five aliquots comprising various concentrations of TQNP 0 (CON), 12.5 (TQNP12.5), 25 (TQNP25), 37.5 (TQNP37.5), and 50 (TQNP50) µg/mL, and then cryopreserved and stored in liquid nitrogen (−196 °C). The results revealed that TQNPs (25 to 50 µg/mL) provided the most optimal results in terms of membrane integrity (p < 0.001) and progressive motility (p < 0.01). In contrast, TQNP50 resulted in a greater post-thawed sperm viability (p = 0.02) compared with other groups. The addition of TQNPs to the extender had no discernible effects on sperm morphology measures. Sperm kinematic motion was significantly improved in the TQNP50 group compared to the control group (p < 0.01). TQNPs effectively reduced the content of H2O2 and MDA levels and improved the total antioxidant capacity of post-thawed extended semen (p < 0.01). The addition of TQNP significantly increased the number of intact acrosomes (p < 0.0001) and decreased the number of exocytosed acrosomes (p < 0.0001). A significant reduction in apoptosis-like changes was observed in TQNP groups. The non-return rates of buffalo cows inseminated with TQNP50-treated spermatozoa were higher than those in the control group (p < 0.05; 88% vs. 72%). These findings suggested that the freezing extender supplemented with TQNPs could effectively enhance the cryotolerance and fertility of buffalo sperm.
Epidemiology and Control of Rabies in Cattle and Equines in Rondônia State, a Brazilian’s Legal Amazon Area
Authors: Sodré Débora Naihane Alves , Rossi Gabriel Augusto Marques , Mathias Luis Antonio , de Andrade Belo Marco Antonio
Published: September 2023

Rabies is a fatal neglected tropical zoonosis, and its significance for domestic herbivores in the rural cycle is probably associated with rainforest deforestation, livestock, and agricultural expansion. This epidemiological survey aimed to study the occurrence of rabies in bovines and equines in the state of Rondônia, located in the Brazilian’s Legal Amazon, between the years 2002 and 2021, correlating these findings with the prophylactic strategies adopted by the local sanitary agency for rabies control. During this period, 201 cases were observed in bovines and 23 in equines. A downward trend in rabies incidence was observed for both domestic herbivores. Rabies did not show a higher occurrence in any specific time of the year, and epidemic periods varied during some years for bovines and equines. Using the Generalized estimating equations (GEE) method, a multiple model approach was obtained with the explanatory variables significantly associated with the decrease in rabies incidence in cattle and horses during the study period: the ratio of treated bats and ratio of vaccine doses sold. Furthermore, the ratio of printed educative material was positively associated with rabies incidence. Despite a decreasing trend in rabies occurrences in this Amazon rainforest area, likely due to the actions taken by the animal sanitary agency, rabies remains endemic and requires monitoring, as well as prophylactic strategies to control this disease.
Applications of Enteroendocrine Cells (EECs) Hormone: Applicability on Feed Intake and Nutrient Absorption in Chickens
Authors: Lee Jihwan , Kim Woo Kyun
Published: September 2023

This review focuses on the role of hormones derived from enteroendocrine cells (EECs) on appetite and nutrient absorption in chickens. In response to nutrient intake, EECs release hormones that act on many organs and body systems, including the brain, gallbladder, and pancreas. Gut hormones released from EECs play a critical role in the regulation of feed intake and the absorption of nutrients such as glucose, protein, and fat following feed ingestion. We could hypothesize that EECs are essential for the regulation of appetite and nutrient absorption because the malfunction of EECs causes severe diarrhea and digestion problems. The importance of EEC hormones has been recognized, and many studies have been carried out to elucidate their mechanisms for many years in other species. However, there is a lack of research on the regulation of appetite and nutrient absorption by EEC hormones in chickens. This review suggests the potential significance of EEC hormones on growth and health in chickens under stress conditions induced by diseases and high temperature, etc., by providing in-depth knowledge of EEC hormones and mechanisms on how these hormones regulate appetite and nutrient absorption in other species.
Effect of Spirulina platensis Supplementation on Carcass Characteristics, Fatty Acid Profile, and Meat Quality of Omani Goats
Authors: Al-Yahyaey Fahad , Al-Marzooqi Waleed , Shaat Ihab , Smith Melanie A. , Al-Sabahi Jamal , Melak Sherif , Bush Russell D.
Published: September 2023

In a 70-day study, 36 Jabbali and Sahrawi bucks, aged 11 months, were utilized to evaluate the effects of different levels of spirulina dietary supplement (SP) on carcass characteristics, fatty acid profile, and meat quality traits in Omani goat breeds. The goats were put into six groups of six bucks, each at random. The diet consisted of a conventional concentrate feed ration (CFR) without spirulina (CON), and the CFR diet supplemented with spirulina at the levels of 2 g/head daily (T1) and 4 g/head daily (T2). In general, Sahrawi bucks showed a highly significant response to SP feeding compared with Jabbali bucks. The treatment groups, especially T1, showed a significant increase in average daily gain and carcass traits (body length, leg length, and the rack weight) compared with the CON group of Sahrawi bucks. The weights of omental and kidney fat were also significantly higher in T1 compared with CON and T2 groups of Sahrawi goats, while they were significantly higher in T2 compared with CON and T1 groups of Jabbali goats. Carcass profile and meat quality, including ultimate ph and meat color lightness (L*) were increased significantly with dietary spirulina in both LD and SM muscles of Sahrawi goats. Most of the Sfa, Mufa, Pufa, Pufa n-6, Pufa n-3, and n-6/n-3 ratios of the LD showed significant differences in diets supplemented with SP compared with CON for Sahrawi bucks, while some of them were significant in Jabbali bucks. The LD muscle of Sahrawi goats fed diets supplemented with SP of the T1 group significantly decreased in the amounts of pentadecanoic and margaric acids compared with the T2 and CON groups. The study concluded that incorporating SP (2 g and 4 g/head daily) into the diet of Omani goats, especially Sahrawi goats, can increase growth performance, as well as improve fatty acid composition and meat quality.
Growth Rate Distribution and Potential Non-Linear Relationship between Body Weight and Walking Ability in Turkeys
Authors: Soyalp Samet , Hartono Evan , Willems Owen W. , Bai Xuechun , Wood Benjamin J. , Aggrey Samuel E. , Rekaya Romdhane
Published: September 2023

The aim of this study was to investigate the potential non-linear relationship between growth and walking ability (WA). The phenotypic data included body weights at 12 and 20 weeks and WA at 20 weeks of age measured on 276,059 male turkeys. The growth rate at three age periods (0 to 12, 12 to 20 and 0 to 20 weeks) was calculated. Each bird was assigned to one of the quartiles of the growth rate distribution for each age period. Between the first and fourth quartiles, the incidence of score 1 (bad WA) increased by 31, 18, and 33% for the first, second, and third age periods, respectively. For good WA (scores 4, 5, and 6), the incidence decreased by 55, 66, and 72% between the first and fourth quartiles for the first, second, and third age periods, respectively. Estimates of heritability of WA ranged between 0.18 and 0.26. The genetic correlations between adjacent growth rate quartiles were high and decayed as the interval between quartiles increased. The magnitude of the variation in the incidence of walking scores and genetic correlations across the growth rate quartiles point towards a non-linear relationship between growth and mobility suggesting other factors may affect walking ability.
Phenylalanine Plays Important Roles in Regulating the Capacity of Intestinal Immunity, Antioxidants and Apoptosis in Largemouth Bass (Micropterus salmoides)
Authors: Yi Changguo , Liang Hualiang , Huang Dongyu , Yu Heng , Xue Chunyu , Gu Jiaze , Chen Xiaoru , Wang Yongli , Ren Mingchun , Zhang Lu
Published: September 2023

This experiment was planned to explore the role of dietary phenylalanine levels in intestinal immunity, antioxidant activity and apoptosis in largemouth bass (Micropterus salmoides). Six iso-nitrogen and iso-energy diets with phenylalanine levels of 1.45% (DPHE1), 1.69% (DPHE2), 1.98% (DPHE3), 2.21% (DPHE4), 2.48% (DPHE5) and 2.76% (DPHE6) were designed. Juvenile largemouth bass were fed the experimental diet for 8 weeks. In this study, the DPHE5 group increased the expression of intestinal antioxidant genes in largemouth bass (p < 0.05), and the increase of antioxidant enzyme activities and content of related substances was most concentrated in the DPHE3 and DPHE4 groups (p < 0.05). The results of plasma biochemistry were similar to that of enzyme activity. The expression of genes related to the TOR signalling pathway mainly increased significantly in the DPHE5 group (p < 0.05). Similarly, the expression of inflammatory factors, as well as apoptotic factors, also showed significant increases in the DPHE5 group (p < 0.05). In conclusion, unbalanced phenylalanine in the diet could lead to a decrease in intestinal immune and antioxidant capacity and also cause a decline in the aggravation of intestinal cell apoptosis.
Origin, Selection and Current Status of the Utrerana Chicken Breed: A Review
Authors: Plata-Casado Antonio , García-Romero Carmelo , González-Redondo Pedro
Published: September 2023

The conservation of threatened local livestock genetic resources involves characterising them to implement conservation strategies. The Utrerana is a Mediterranean-type chicken breed, included in the Official Catalogue of Livestock Breeds of Spain and in the Domestic Animal Diversity Information System (DAD-IS) of the Food and Agriculture Organization (FAO), native to south Spain created in 1926 by a farmer from Utrera (Seville province). It was selected for laying performance and with four plumage varieties (White, Black, Black-barred and Partridge), reaching average yields of 180 eggs per hen per year. It was widely used in commercial farming in the second quarter of the 20th century, being subsequently displaced in the second half of the 20th century by the spreading of the improved foreign breeds and lines. The Utrerana breed was reared from then on for its aesthetic values and in backyard systems, being endangered with a vulnerable local risk status (1822 birds in 2022 with an increasing trend) and having worsened its laying performance as selection for productivity ceased. The breed has received little attention from the research community. Therefore, this work aims to review the literature on the origin, selection, genetic and productive characterisation and status of the populations of the breed, as well as the conservation strategies. The Utrerana chicken is a polymorphic breed showing high genetic diversity, sexual dimorphism and morpho-functional differences among varieties. Currently, Utrerana hens start laying at 6 months of age, and a hen lays 94–121 high quality eggs (59–64 g) per year, showing seasonality. It is a slow-growing breed with mature weights of 2.4–2.6 kg for roosters and 1.9–2.0 g for hens. The Utrerana chicken breed is rustic and adapted to alternative farming systems. This review has identified research gaps to be filled, such as characterising the carcass and meat quality of the Utrerana chicken, and evidences the need to make efforts to promote the breed and expand its populations.
Co-Circulation of Multiple Coronavirus Genera and Subgenera during an Epizootic of Lethal Respiratory Disease in Newborn Alpacas (Vicugna pacos) in Peru: First Report of Bat-like Coronaviruses in Alpacas
Authors: Llanco Luis , Retamozo Karubya , Oviedo Noriko , Manchego Alberto , Lázaro César , Navarro-Mamani Dennis A. , Santos Norma , Rojas Miguel
Published: September 2023

Coronaviruses (CoVs) infect a wide range of hosts, including humans, domestic animals, and wildlife, typically causing mild-to-severe respiratory or enteric disease. The main objective of this study was to identify CoV genera and subgenera detected in Peruvian alpacas. Lung lavage specimens were collected from 32 animals aged 1 to 6 weeks. CoVs were identified by using RT-PCR to amplify a pan-CoV conserved region of the RNA-dependent RNA polymerase-encoding gene. A nested PCR was performed to identify β-CoVs. Then, β-CoV-positive samples were subjected to RT-PCR using specific primers to identify the Embecovirus subgenus. Out of 32 analyzed samples, 30 (93.8%) tested positive for at least one CoV genus. β-, α-, or unclassified CoVs were identified in 24 (80%), 1 (3.3%), and 1 (3.3%) of the positive samples, respectively. A CoV genus could not be identified in two (6.7%) samples. A mixture of different CoV genera was detected in two (6.7%) samples: one was co-infected with β- and α-CoVs, and the other contained a β- and an unclassified CoV. A sequence analysis of the amplicons generated by the PCR identified 17 β-CoV strains belonging to the subgenus Embecovirus and two α-CoV strains belonging to Decacovirus. A phylogenetic analysis of two strains revealed a relationship with an unclassified Megaderma BatCoV strain. A subgenus could not be identified in nine β-CoV samples. Our data show a high prevalence and a high genetic diversity of CoV genera and subgenera that infect alpacas, in which the β-CoV subgenus Embecovirus predominated. Our data also suggest a new role for bats in the dissemination and transmission of uncommon CoVs to alpacas raised in rural Peru.
Analysis of the Drinking Behavior of Beef Cattle Using Computer Vision
Authors: Islam Md Nafiul , Yoder Jonathan , Nasiri Amin , Burns Robert T. , Gan Hao
Published: September 2023

Monitoring the drinking behavior of animals can provide important information for livestock farming, including the health and well-being of the animals. Measuring drinking time is labor-demanding and, thus, it is still a challenge in most livestock production systems. Computer vision technology using a low-cost camera system can be useful in overcoming this issue. The aim of this research was to develop a computer vision system for monitoring beef cattle drinking behavior. A data acquisition system, including an RGB camera and an ultrasonic sensor, was developed to record beef cattle drinking actions. We developed an algorithm for tracking the beef cattle’s key body parts, such as head–ear–neck position, using a state-of-the-art deep learning architecture DeepLabCut. The extracted key points were analyzed using a long short-term memory (LSTM) model to classify drinking and non-drinking periods. A total of 70 videos were used to train and test the model and 8 videos were used for validation purposes. During the testing, the model achieved 97.35% accuracy. The results of this study will guide us to meet immediate needs and expand farmers’ capability in monitoring animal health and well-being by identifying drinking behavior.
Repositioning of HMG-CoA Reductase Inhibitors as Adjuvants in the Modulation of Efflux Pump-Mediated Bacterial and Tumor Resistance
Authors: Schelz Zsuzsanna , Muddather Hiba F. , Zupkó István
Published: September 2023

Efflux pump (EP)-mediated multidrug resistance (MDR) seems ubiquitous in bacterial infections and neoplastic diseases. The diversity and lack of specificity of these efflux mechanisms raise a great obstacle in developing drugs that modulate efflux pumps. Since developing novel chemotherapeutic drugs requires large investments, drug repurposing offers a new approach that can provide alternatives as adjuvants in treating resistant microbial infections and progressive cancerous diseases. Hydroxy-methyl-glutaryl coenzyme-A (HMG-CoA) reductase inhibitors, also known as statins, are promising agents in this respect. Originally, statins were used in the therapy of dyslipidemia and for the prevention of cardiovascular diseases; however, extensive research has recently been performed to elucidate the functions of statins in bacterial infections and cancers. The mevalonate pathway is essential in the posttranslational modification of proteins related to vital eukaryotic cell functions. In this article, a comparative review is given about the possible role of HMG-CoA reductase inhibitors in managing diseases of bacterial and neoplastic origin. Molecular research and clinical studies have proven the justification of statins in this field. Further well-designed clinical trials are urged to clarify the significance of the contribution of statins to the lower risk of disease progression in bacterial infections and cancerous diseases.
The Direction of the Antibacterial Effect of Rutin Hydrate and Amikacin
Authors: Miklasińska-Majdanik Maria , Kępa Małgorzata , Wąsik Tomasz J. , Zapletal-Pudełko Karolina , Klim Magdalena , Wojtyczka Robert D.
Published: September 2023

The aim of the presented study was to examine the in vitro antimicrobial activity of rutin hydrate (RH) alone and in combination with amikacin against 12 reference strains of Gram-positive and Gram-negative bacteria. The antibacterial activity assay was evaluated in the concentration range of 2–2048 µg/mL. A serial microdilution method was used to determine the minimal inhibitory concentration (MIC) of the examined compound against reference strains. RH showed varying potential against the tested strains with MICs ranging from 128 to 1024 µg/mL. In order to examine the combinatory profile of RH and amikacin, the fractional inhibitory concentrations (FICs) were determined. The RH–amikacin combination was more active against Gram-negative bacteria where four synergism and two additive interactions were noted. For four out of six Gram-positive isolates, an indifferent effect of RH and amikacin was demonstrated, and for two strains, the tested combination had an additive effect. The results of this study showed that RH possesses antimicrobial potential in vitro towards the tested reference isolates. Moreover, it shows a promising combined effect with amikacin against Gram-negative bacteria.
Protecting the Eye Lens from Oxidative Stress through Oxygen Regulation
Authors: Subczynski Witold Karol , Pasenkiewicz-Gierula Marta , Widomska Justyna
Published: September 2023

Molecular oxygen is a primary oxidant that is involved in the formation of active oxygen species and in the oxidation of lipids and proteins. Thus, controlling oxygen partial pressure (concentration) in the human organism, tissues, and organs can be the first step in protecting them against oxidative stress. However, it is not an easy task because oxygen is necessary for ATP synthesis by mitochondria and in many biochemical reactions taking place in all cells in the human body. Moreover, the blood circulatory system delivers oxygen to all parts of the body. The eye lens seems to be the only organ that is protected from the oxidative stress through the regulation of oxygen partial pressure. The basic mechanism that developed during evolution to protect the eye lens against oxidative damage is based on the maintenance of a very low concentration of oxygen within the lens. This antioxidant mechanism is supported by the resistance of both the lipid components of the lens membrane and cytosolic proteins to oxidation. Any disturbance, continuous or acute, in the working of this mechanism increases the oxygen concentration, in effect causing cataract development. Here, we describe the biophysical basis of the mechanism and its correlation with lens transparency.
Potential Neuroprotective Role of Melatonin in Sepsis-Associated Encephalopathy Due to Its Scavenging and Anti-Oxidative Properties
Authors: Sieminski Mariusz , Szaruta-Raflesz Karolina , Szypenbejl Jacek , Krzyzaniak Klaudia
Published: September 2023

Sepsis is defined as life-threatening organ dysfunction caused by a dysregulated host response to infection. The brain is one of the organs involved in sepsis, and sepsis-induced brain injury manifests as sepsis-associated encephalopathy (SAE). SAE may be present in up to 70% of septic patients. SAE has a very wide spectrum of clinical symptoms, ranging from mild behavioral changes through cognitive disorders to disorders of consciousness and coma. The presence of SAE increases mortality in the population of septic patients and may lead to chronic cognitive dysfunction in sepsis survivors. Therefore, therapeutic interventions with neuroprotective effects in sepsis are needed. Melatonin, a neurohormone responsible for the control of circadian rhythms, exerts many beneficial physiological effects. Its anti-inflammatory and antioxidant properties are well described. It is considered a potential therapeutic factor in sepsis, with positive results from studies on animal models and with encouraging results from the first human clinical trials. With its antioxidant and anti-inflammatory potential, it may also exert a neuroprotective effect in sepsis-associated encephalopathy. The review presents data on melatonin as a potential drug in SAE in the wider context of the pathophysiology of SAE and the specific actions of the pineal neurohormone.
Colorants and Antioxidants Deriving from Methylglyoxal and Heterocyclic Maillard Reaction Intermediates
Authors: Bork Leon Valentin , Baumann Maximilian , Stobernack Tobias , Rohn Sascha , Kanzler Clemens
Published: September 2023

The Maillard reaction is well known for producing antioxidant compounds alongside colored substances. Low-molecular-weight antioxidant intermediates such as maltol (MAL) or norfuraneol (NF) are well described, but it is still unclear which of these Maillard intermediates are the precursors of antioxidant and colored melanoidins—the so-called late stage Maillard reaction products. This study aimed to provide novel insights into the correlation between browning potential and antioxidant properties of reaction products formed during the heat treatment of prominent Maillard reaction intermediates. It was achieved by the incubation of binary reaction systems composed of methylglyoxal (MGO) or NF in combination with furfural (FF), MAL, and pyrrole-2-carbaldehyde (PA) at pH 5 and 130 °C for up to 120 min. Overall, it could be shown that the formation of colored products in the binary NF reaction systems was more efficient compared to those of MGO. This was reflected in an increased browning intensity of up to 400% and a lower conversion rate of NF compared to MGO. The colorants formed by NF and FF or PA (~0.34 kDa and 10–100 kDa) were also found to exhibit higher molecular weights compared to the analogue products formed in the MGO incubations (<0.34 kDa and 10–100 kDa). The incorporation of NF into these heterogenous products with FF and PA resulted in the preservation of the initial antioxidant properties of NF (p < 0.05), whereas no antioxidant products were formed after the incubation of MGO.
Study on the Characteristics of Pore Change in Tuff under the Frost and Salt Action Using High-Precision CT Scanning Equipment
Authors: Chen Lilei , Sun Yue , Wang Chao , Sha Peng , Jin Huijun , Liu Minghao , Li Anyuan
Published: September 2023

Using high-precision CT scanning equipment, two series of tests on frost and salt weathering were conducted to investigate the characteristics of pore change in tuff. Experiments on frost and salt aging were performed with pieces of tuff from the same area of southeast China. One set of tuff samples was soaked in saturated sodium sulfate or magnesium sulfate solutions for 60 days. Another set of tuff samples were subjected to 60 freeze–thaw cycles after being submerged in saturated sodium sulfate or magnesium sulfate solutions for 48 h. Our study demonstrates that processes such as salt erosion and freeze–thaw affect the pore evolution of tuffs significantly. Tuff lost 1.56% of its mass after being submerged in magnesium sulfate solutions for 60 days, while tuff submerged in sodium sulfate solutions gained a negative 0.33% of its mass. After 60 freeze–thaw cycles, the mass loss of tuff samples immersed in sodium sulfate, magnesium sulfate, and distilled water solutions was 3.52%, 3.58%, and 3.82%, respectively. The average porosity of the magnesium sulfate and sodium sulfate test groups increased by 6.59% and 4.14%, respectively, when the number of days of salt erosion was extended from 10 to 60 days. The average porosity of tuff samples immersed in magnesium persulfate and sodium sulfate solutions increased by 2.25% and 2.18%, respectively, as the number of freeze–thaw cycles went from 10 to 60.
Algorithm for Determining the Optimal Weights for the Akushsky Core Function with an Approximate Rank
Authors: Shiriaev Egor , Kucherov Nikolay , Babenko Mikhail , Lutsenko Vladislav , Al-Galda Safwat
Published: September 2023

In this paper, a study is carried out related to improving the reliability and fault tolerance of Fog Computing systems. This work is a continuation of previous studies. In the past, we have developed a method of fast operation for determining the sign of a number in the Residue Number System based on the Akushsky Core Function. We managed to increase the efficiency of calculations by using the approximate rank of a number. However, this result is not final. In this paper, we consider in detail the methods and techniques of the Akushsky Core Function. During research, it was found that the so-called weights can be equal to random variables. Based on the data obtained, we have developed a method for determining the optimal weights for the Akushsky Core Function. The result obtained allows you to obtain a performance advantage due to the preliminary identification of optimal weights for each set of moduli.
A Knowledge Graph Framework for Dementia Research Data
Authors: Timón-Reina Santiago , Rincón Mariano , Martínez-Tomás Rafael , Kirsebom Bjørn-Eivind , Fladby Tormod
Published: September 2023

Dementia disease research encompasses diverse data modalities, including advanced imaging, deep phenotyping, and multi-omics analysis. However, integrating these disparate data sources has historically posed a significant challenge, obstructing the unification and comprehensive analysis of collected information. In recent years, knowledge graphs have emerged as a powerful tool to address such integration issues by enabling the consolidation of heterogeneous data sources into a structured, interconnected network of knowledge. In this context, we introduce DemKG, an open-source framework designed to facilitate the construction of a knowledge graph integrating dementia research data, comprising three core components: a KG-builder that integrates diverse domain ontologies and data annotations, an extensions ontology providing necessary terms tailored for dementia research, and a versatile transformation module for incorporating study data. In contrast with other current solutions, our framework provides a stable foundation by leveraging established ontologies and community standards and simplifies study data integration while delivering solid ontology design patterns, broadening its usability. Furthermore, the modular approach of its components enhances flexibility and scalability. We showcase how DemKG might aid and improve multi-modal data investigations through a series of proof-of-concept scenarios focused on relevant Alzheimer’s disease biomarkers.