bluuebunny/crossref_metadata_2025 huggingface dataset:
Recent progress of iron-based nanomaterials in gene delivery and tumor gene therapy
Authors: Gong Ya , Hu Xiaoyan , Chen Ming , Wang Jun
Published: June 2024

Gene therapy aims to modify or manipulate gene expression and change the biological characteristics of living cells to achieve the purpose of treating diseases. The safe, efficient, and stable expression of exogenous genes in cells is crucial for the success of gene therapy, which is closely related to the vectors used in gene therapy. Currently, gene therapy vectors are mainly divided into two categories: viral vectors and non-viral vectors. Viral vectors are widely used due to the advantages of persistent and stable expression, high transfection efficiency, but they also have certain issues such as infectivity, high immunological rejection, randomness of insertion mutation, carcinogenicity, and limited vector capacity. Non-viral vectors have the advantages of non-infectivity, controllable chemical structure, and unlimited vector capacity, but the transfection efficiency is low. With the rapid development of nanotechnology, the unique physicochemical properties of nanomaterials have attracted increasing attention in the field of drug and gene delivery. Among many nanomaterials, iron-based nanomaterials have attracted much attention due to their superior physicochemical properties, such as Fenton reaction, magnetic resonance imaging, magnetothermal therapy, photothermal therapy, gene delivery, magnetically-assisted drug delivery, cell and tissue targeting, and so on. In this paper, the research progress of iron-based nanomaterials in gene delivery and tumor gene therapy is reviewed, and the future application direction of iron-based nanomaterials is further prospected.
Adjuvants for cancer mRNA vaccines in the era of nanotechnology: strategies, applications, and future directions
Authors: Cao Lei-Ming , Yu Yi-Fu , Li Zi-Zhan , Zhong Nian-Nian , Wang Guang-Rui , Xiao Yao , Liu Bing , Wu Qiu-Ji , Feng Chun , Bu Lin-Lin
Published: June 2024

Research into mRNA vaccines is advancing rapidly, with proven efficacy against coronavirus disease 2019 and promising therapeutic potential against a variety of solid tumors. Adjuvants, critical components of mRNA vaccines, significantly enhance vaccine effectiveness and are integral to numerous mRNA vaccine formulations. However, the development and selection of adjuvant platforms are still in their nascent stages, and the mechanisms of many adjuvants remain poorly understood. Additionally, the immunostimulatory capabilities of certain novel drug delivery systems (DDS) challenge the traditional definition of adjuvants, suggesting that a revision of this concept is necessary. This review offers a comprehensive exploration of the mechanisms and applications of adjuvants and self-adjuvant DDS. It thoroughly addresses existing issues mentioned above and details three main challenges of immune-related adverse event, unclear mechanisms, and unsatisfactory outcomes in old age group in the design and practical application of cancer mRNA vaccine adjuvants. Ultimately, this review proposes three optimization strategies which consists of exploring the mechanisms of adjuvant, optimizing DDS, and improving route of administration to improve effectiveness and application of adjuvants and self-adjuvant DDS.
Reduced protein levels in latex gloves may play an alternative approach to lowering latex sensitization risks among health workers; a cross-sectional analytical study
Authors: Ngamchokwathana Chatpong , Chaiear Naesinee , Sakdapipanich Jitladda , Dechyotin Sumalai , Sripramai Somsamai , Khajornpipat Prapassorn
Published: June 2024

Background

Latex gloves are essential for protecting healthcare workers from biological hazards but pose a risk of latex allergy, particularly due to powdered, protein, and allergen content. Recent advancements in latex glove manufacturing have led to reduced levels of extractable proteins, a known factor triggering allergenic reaction. This study aimed to compare latex sensitization between nursing staff using low-protein and high-protein latex gloves at a tertiary university hospital in Thailand.

Methods

A cross-sectional analytical study categorized participants into two groups based on glove exposure: the low extractable protein group (only exposed to non-powdered latex gloves with extractable protein levels below 50 µg/g) and the high extractable protein group (exposed to powdered latex gloves with levels above 50 µg/g). The sample size comprised 163 individuals in the low protein group and 318 in the high protein group (1:2). Latex allergy symptoms and sensitization were assessed using a self-administered questionnaire and latex-specific IgE measurement (ImmunoCAP), respectively. Data analysis involved descriptive and inferential statistics, including odds ratios and 95%CI.

Results

Demographic data was mostly similar in both exposure groups except for age. No significant differences in latex sensitization between the low and high protein groups were found via latex-specific IgE measurement (crude OR 1.90, 95%CI: 0.5, 7.18), potentially attributed to lower extractable protein levels in powdered latex gloves compared to previous studies. In contrast, the low protein group exhibited significantly fewer current latex allergy symptoms in both bivariate (crude OR 0.24, 95%CI: 0.06, 0.74) and multiple variable analysis (adjusted OR 0.18, 95%CI: 0.04, 0.86). Moreover, there was a significant reduction in latex allergy symptoms among the low protein group, decreasing from 9.8% who reported experiencing symptoms (when powdered latex gloves were used) to 1.2% who still reported current symptoms (OR 0.11, 95%CI: 0.02, 0.44).

Conclusions

This study underscores the importance of using non-powdered and low-protein latex gloves to reduce latex allergy symptoms while emphasizing the need for further investigation into the relationship between extractable protein levels in addition to the attempt of the major allergen removal and latex sensitization amid evolving glove manufacturing practices.
Mapping the membrane orientation of auxin homeostasis regulators PIN5 and PIN8 in Arabidopsis thaliana root cells reveals their divergent topology
Authors: Seifu Yewubnesh Wendimu , Pukyšová Vendula , Rýdza Nikola , Bilanovičová Veronika , Zwiewka Marta , Sedláček Marek , Nodzyński Tomasz
Published: June 2024

PIN proteins establish the auxin concentration gradient, which coordinates plant growth. PIN1-4 and 7 localized at the plasma membrane (PM) and facilitate polar auxin transport while the endoplasmic reticulum (ER) localized PIN5 and PIN8 maintain the intracellular auxin homeostasis. Although an antagonistic activity of PIN5 and PIN8 proteins in regulating the intracellular auxin homeostasis and other developmental events have been reported, the membrane topology of these proteins, which might be a basis for their antagonistic function, is poorly understood. In this study we optimized digitonin based PM-permeabilizing protocols coupled with immunocytochemistry labeling to map the membrane topology of PIN5 and PIN8 in Arabidopsis thaliana root cells. Our results indicate that, except for the similarities in the orientation of the N-terminus, PIN5 and PIN8 have an opposite orientation of the central hydrophilic loop and the C-terminus, as well as an unequal number of transmembrane domains (TMDs). PIN8 has ten TMDs with groups of five alpha-helices separated by the central hydrophilic loop (HL) residing in the ER lumen, and its N- and C-terminals are positioned in the cytoplasm. However, the topology of PIN5 comprises nine TMDs. Its N-terminal end and the central HL face the cytoplasm while its C-terminus resides in the ER lumen. Overall, this study shows that PIN5 and PIN8 proteins have a divergent membrane topology while introducing a toolkit of methods for studying membrane topology of integral proteins including those localized at the ER membrane.
Non-wounding contact-based Inoculation of fruits with fungal pathogens in postharvest
Authors: Sbodio Adrian O. , Mesquida-Pesci Saskia D. , Yip Nancy , Alvarez-Rojo Isabela , Gutierrez-Baeza Elia , Tay Samantha , Bello Pedro , Wang Luxin , Blanco-Ulate Barbara
Published: June 2024

Background

Fungal pathogens significantly impact the quality of fruits and vegetables at different stages of the supply chain, leading to substantial food losses. Understanding how these persistent fungal infections occur and progress in postharvest conditions is essential to developing effective control strategies.

Results

In this study, we developed a reliable and consistent inoculation protocol to simulate disease spread from infected fruits to adjacent healthy fruits during postharvest storage. We tested different combinations of relevant fruit commodities, including oranges, tomatoes, and apples, against impactful postharvest pathogens such as Penicillium digitatum, Penicillium italicum, Botrytis cinerea, and Penicillium expansum. We assessed the efficacy of this protocol using fruits treated with various postharvest methods and multiple isolates for each pathogen. We optimized the source of infected tissue and incubation conditions for each fruit-pathogen combination. Disease incidence and severity were quantitatively evaluated to study infection success and progression. At the final evaluation point, 80% or higher disease incidence rates were observed in all trials except for the fungicide-treated oranges inoculated with fungicide-susceptible Penicillium spp. isolates. Although disease incidence was lower in that particular scenario, it is noteworthy that the pathogen was still able to establish itself under unfavorable conditions, indicating the robustness of our methodology. Finally, we used multispectral imaging to detect early P. digitatum infections in oranges before the disease became visible to the naked eye but after the pathogen was established.

Conclusions

We developed a non-invasive inoculation strategy that can be used to recreate infections caused by contact or nesting in postharvest. The observed high disease incidence and severity values across fruit commodities and fungal pathogens demonstrate the robustness, efficacy, and reproducibility of the developed methodology. The protocol has the potential to be tailored for other pathosystems. Additionally, this approach can facilitate the study of fruit-pathogen interactions and the assessment of innovative control strategies.
miR-27b-3p reduces muscle fibrosis during chronic skeletal muscle injury by targeting TGF-βR1/Smad pathway
Authors: Yao Hang , Qian Jin , Bian Xu-ting , Guo Lin , Tang Kang-lai , Tao Xu
Published: June 2024

Background

Fibrosis is a significant pathological feature of chronic skeletal muscle injury, profoundly affecting muscle regeneration. Fibro-adipogenic progenitors (FAPs) have the ability to differentiate into myofibroblasts, acting as a primary source of extracellular matrix (ECM). the process by which FAPs differentiate into myofibroblasts during chronic skeletal muscle injury remains inadequately explored.

Method

mouse model with sciatic nerve denervated was constructed and miRNA expression profiles between the mouse model and uninjured mouse were analyzed. qRT/PCR and immunofluorescence elucidated the effect of miR-27b-3p on fibrosis in vivo and in vitro. Dual-luciferase reporter identified the target gene of miR-27b-3p, and finally knocked down or overexpressed the target gene and phosphorylation inhibition of Smad verified the influence of downstream molecules on the abundance of miR-27b-3p and fibrogenic differentiation of FAPs.

Result

FAPs derived from a mouse model with sciatic nerves denervated exhibited a progressively worsening fibrotic phenotype over time. Introducing agomiR-27b-3p effectively suppressed fibrosis both in vitro and in vivo. MiR-27b-3p targeted Transforming Growth Factor Beta Receptor 1 (TGF-βR1) and the abundance of miR-27b-3p was negatively regulated by TGF-βR1/Smad.

Conclusion

miR-27b-3p targeting the TGF-βR1/Smad pathway is a novel mechanism for regulating fibrogenic differentiation of FAPs. Increasing abundance of miR-27b-3p, suppressing expression of TGF-βR1 and inhibiting phosphorylation of smad3 presented potential strategies for treating fibrosis in chronic skeletal muscle injury.
Involvement of RAMP1/p38MAPK signaling pathway in osteoblast differentiation in response to mechanical stimulation: a preliminary study
Authors: Binlateh Thunwa , Leethanakul Chidchanok , Thammanichanon Peungchaleoy
Published: June 2024

Objective

The present study aimed to investigate the underlying mechanism of mechanical stimulation in regulating osteogenic differentiation.

Materials and methods

Osteoblasts were exposed to compressive force (0–4 g/cm2) for 1–3 days or CGRP for 1 or 3 days. Expression of receptor activity modifying protein 1 (RAMP1), the transcription factor RUNX2, osteocalcin, p38 and p-p38 were analyzed by western blotting. Calcium mineralization was analyzed by alizarin red straining.

Results

Using compressive force treatments, low magnitudes (1 and 2 g/cm2) of compressive force for 24 h promoted osteoblast differentiation and mineral deposition whereas higher magnitudes (3 and 4 g/cm2) did not produce osteogenic effect. Through western blot assay, we observed that the receptor activity-modifying protein 1 (RAMP1) expression was upregulated, and p38 mitogen-activated protein kinase (MAPK) was phosphorylated during low magnitudes compressive force-promoted osteoblast differentiation. Further investigation of a calcitonin gene-related peptide (CGRP) peptide incubation, a ligand for RAMP1, showed that CGRP at concentration of 25 and 50 ng/ml could increase expression levels of RUNX2 and osteocalcin, and percentage of mineralization, suggesting its osteogenic potential. In addition, with the same conditions, CGRP also significantly upregulated RAMP1 and phosphorylated p38 expression levels. Also, the combination of compressive forces (1 and 2 g/cm2) with 50 ng/ml CGRP trended to increase RAMP1 expression, p38 activity, and osteogenic marker RUNX2 levels, as well as percentage of mineralization compared to compressive force alone. This suggest that RAMP1 possibly acts as an upstream regulator of p38 signaling during osteogenic differentiation.

Conclusion

These findings suggest that CGRP-RAMP1/p38MAPK signaling implicates in osteoblast differentiation in response to optimal magnitude of compressive force. This study helps to define the underlying mechanism of compressive stimulation and may also enhance the application of compressive stimulation or CGRP peptide as an alternative approach for accelerating tooth movement in orthodontic treatment.
Acute anterior cruciate ligament rupture: can repair become an alternative to reconstruction: a meta-analysis of randomized controlled trials and cohort studies
Authors: Opoku Michael , Fang Mingqing , Lu Wenhao , Li Yusheng , Xiao Wenfeng
Published: June 2024

Purpose

To perform a meta-analysis to compare clinical outcomes of anterior cruciate ligament (ACL) repair and ACL reconstruction for acute ACL rupture.

Method

We searched Pubmed, Embase, the Cochrane Library, and Web of Science databases to seek relevant studies. Clinical outcomes included failure rate, hardware removal rate, anteroposterior (AP) knee laxity, and patient-reported outcomes. In addition, subgroup analysis was carried out according to repair techniques, rupture locations, and study designs. Funnel plots were used to detect publication bias. All statistical analysis was performed using STATA (version 14.2, StataCorp).

Results

A total of 10 articles were included in this study, comprising 5 randomized controlled trials (RCTs) and 5 cohort studies, involving a total of 549 patients. We found no statistical differences between the ACL repair and ACL reconstruction in the following outcomes: failure rate, AP knee laxity, International Knee Documentation Committee (IKDC) score, Lysholm score, Knee Injury and Osteoarthritis Outcome (KOOS) Score, and Tegner score. However, the ACL repair group had a higher hardware removal rate. Except for AP knee laxity results on different repair techniques, there was no statistical difference in other subgroup analyses.

Conclusion

Compared with ACL reconstruction, ACL repair shows similar results in clinical outcomes, and it is promising to be an effective alternative treatment for acute ACL rupture. Larger samples and higher-quality studies are needed to support our results and further explore the advantages of ACL repair in other aspects.

Level of evidence

Level III.
Evaluating the risk of return to the operating room across all elective orthopaedic procedures
Authors: Kiritsis Nicholas R. , Harris Matthew S. , Reiter Charles R. , Ernst Brady S. , Satalich James R. , Wyatt Phillip B. , O’Neill Conor N. , Vap Alexander R.
Published: June 2024

Background

Although elective procedures have life-changing potential, all surgeries come with an inherent risk of reoperation. There is a gap in knowledge investigating the risk of reoperation across orthopaedics. We aimed to identify the elective orthopaedic procedures with the highest rate of unplanned reoperation and the reasons for these procedures having such high reoperation rates.

Methods

Patients in the NSQIP database were identified using CPT and ICD-10 codes. We isolated 612,815 orthopaedics procedures from 2018 to 2020 and identified the 10 CPT codes with the greatest rate of unplanned return to the operating room. For each index procedure, we identified the ICD-10 codes for the reoperation procedure and categorized them into infection, mechanical failure, fracture, wound disruption, hematoma or seroma, nerve pathology, other, and unspecified.

Results

Below knee amputation (BKA) (CPT 27880) had the highest reoperation rate of 6.92% (37 of 535 patients). Posterior-approach thoracic (5.86%) or cervical (4.14%) arthrodesis and cervical laminectomy (3.85%), revision total hip arthroplasty (5.23%), conversion to total hip arthroplasty (4.33%), and revision shoulder arthroplasty (4.22%) were among the remaining highest reoperation rates. The overall leading causes of reoperation were infection (30.1%), mechanical failure (21.1%), and hematoma or seroma (9.4%) for the 10 procedures with the highest reoperation rates.

Conclusions

This study successfully identified the elective orthopaedic procedures with the highest 30-day return to OR rates. These include BKA, posterior thoracic and cervical spinal arthrodesis, revision hip arthroplasty, revision total shoulder arthroplasty, and cervical laminectomy. With this data, we can identify areas across orthopaedics in which revising protocols may improve patient outcomes and limit the burden of reoperations on patients and the healthcare system. Future studies should focus on the long-term physical and financial impact that these reoperations may have on patients and hospital systems.

Level of clinical evidence

IV.
Clinical, functional and radiological outcome after osteosynthesis of ankle fractures using a specific provocation test
Authors: Zimmermann Julian , Zingg Liv , Frey Walter O. , Schläppi Michel , Babians Arby , Zingg Urs
Published: June 2024

Background

Ankle fractures are frequent, and despite numerous publications on their treatment and outcome, there is a lack of precise data on the functional results in young, healthy and physically active patients. We hypothesized that patients who underwent open reduction and internal fixation (ORIF) for simple ankle fractures would have similar function compared to a healthy control group, whereas patients with complex fractures will have significant functional deficits. Furthermore, we postulate that there is a discrepancy between the radiological and the functional outcomes.

Methods

A set of specific provocation tests was developed to evaluate the postoperative possibility of weight bearing, stop-and-go activities and range of motion. In combination with three questionnaires and a radiographic evaluation, the true functional outcome and the possibility of participating in sporting activities were investigated and compared with those of an age- and sex-matched control group.

Results

A significant impairment was found in unilateral and simple ankle fractures. This impairment increased in tests including stop-and-go activities in combination with load bearing and with the complexity of the fractures. Concerning the subjective outcome, there was a significant adverse effect for daily activities without any difference in preoperative or postoperative sporting activity between the groups. No difference was found in the radiological assessment.

Conclusions

Both simple and complex ankle fractures treated with ORIF have a significant and long-lasting impact on functional outcome in young and active patients. The radiological result is not associated with a good functional outcome.

Trial registration

BASEC-Nr. 2018 − 01124.
Predicting gene expression state and prioritizing putative enhancers using 5hmC signal
Authors: Gonzalez-Avalos Edahi , Onodera Atsushi , Samaniego-Castruita Daniela , Rao Anjana , Ay Ferhat
Published: June 2024

Background

Like its parent base 5-methylcytosine (5mC), 5-hydroxymethylcytosine (5hmC) is a direct epigenetic modification of cytosines in the context of CpG dinucleotides. 5hmC is the most abundant oxidized form of 5mC, generated through the action of TET dioxygenases at gene bodies of actively-transcribed genes and at active or lineage-specific enhancers. Although such enrichments are reported for 5hmC, to date, predictive models of gene expression state or putative regulatory regions for genes using 5hmC have not been developed.

Results

Here, by using only 5hmC enrichment in genic regions and their vicinity, we develop neural network models that predict gene expression state across 49 cell types. We show that our deep neural network models distinguish high vs low expression state utilizing only 5hmC levels and these predictive models generalize to unseen cell types. Further, in order to leverage 5hmC signal in distal enhancers for expression prediction, we employ an Activity-by-Contact model and also develop a graph convolutional neural network model with both utilizing Hi-C data and 5hmC enrichment to prioritize enhancer-promoter links. These approaches identify known and novel putative enhancers for key genes in multiple immune cell subsets.

Conclusions

Our work highlights the importance of 5hmC in gene regulation through proximal and distal mechanisms and provides a framework to link it to genome function. With the recent advances in 6-letter DNA sequencing by short and long-read techniques, profiling of 5mC and 5hmC may be done routinely in the near future, hence, providing a broad range of applications for the methods developed here.
Native and tagged CENP-A histones are functionally inequivalent
Authors: Bui Minh , Baek Songjoon , Bentahar Reda S. , Melters Daniël P. , Dalal Yamini
Published: June 2024

Background

Over the past several decades, the use of biochemical and fluorescent tags has elucidated mechanistic and cytological processes that would otherwise be impossible. The challenging nature of certain nuclear proteins includes low abundancy, poor antibody recognition, and transient dynamics. One approach to get around those issues is the addition of a peptide or larger protein tag to the target protein to improve enrichment, purification, and visualization. However, many of these studies were done under the assumption that tagged proteins can fully recapitulate native protein function.

Results

We report that when C-terminally TAP-tagged CENP-A histone variant is introduced, it undergoes altered kinetochore protein binding, differs in post-translational modifications (PTMs), utilizes histone chaperones that differ from that of native CENP-A, and can partially displace native CENP-A in human cells. Additionally, these tagged CENP-A-containing nucleosomes have reduced centromeric incorporation at early G1 phase and poorly associates with linker histone H1.5 compared to native CENP-A nucleosomes.

Conclusions

These data suggest expressing tagged versions of histone variant CENP-A may result in unexpected utilization of non-native pathways, thereby altering the biological function of the histone variant.
Prediabetes and diabetes were attributed to the prevalence and severity of sarcopenia in middle-aged and elderly adults
Authors: Yuan Jing , Jia Pu
Published: June 2024

Background

Sarcopenia and diabetes are both prevalent health problems worldwide. However, little is known about the relationship between prediabetes and the prevalence and severity of sarcopenia. Therefore, the current study aimed to explore the association between glucose status and the components of sarcopenia, including low muscle mass (LMM), low muscle strength (LMS) and low gait speed (LGS) in US adults.

Methods

Data from the 1999 to 2002 National Health and Nutrition Examination Survey (NHANES) were analyzed. A total of 4002 participants aged ≥ 50 years with available information on glucose status (NGR: 1939 cases; prediabetes: 1172 cases; diabetes: 891 cases) and sarcopenia were included in this study. Sarcopenia was defined according to the Foundation for National Institute of Health criteria. Muscle mass, muscle strength and gait speed were used to evaluate sarcopenia and its severity. Weighed multivariable logistic regression were used to explore the association between glucose status and the components of sarcopenia. The hypothetical population attributable fraction (PAF) for the glucose status was also calculated.

Results

The mean age of the cohort was 63.01 ± 9.89 years, with 49.4% being male. Multiple logistic regression analysis suggested that diabetes was an independent risk factor for sarcopenia (OR = 5.470, 95% CI 1.551–19.296) and showed a marginal association with severe sarcopenia (OR = 10.693, 95% CI 0.955–119.73) compared to NGR in men, but not in women. Additionally, prediabetes was independently associated with severe sarcopenia (OR = 3.647, 95% CI 1.532–8.697), LMS (OR = 1.472, 95% CI 1.018–2.127) and LGS (OR = 1.673, 95% CI 1.054–2.655) in the entire cohort. When stratifying by gender, we further observed that prediabetes was significantly associated with LMS in men (OR = 1.897, 95% CI 1.019–3.543) and related to LMM (OR = 3.174, 95% CI 1.287–7.829) and LGS (OR = 2.075, 95% CI 1.155–3.727) in women. HbA1c was positively associated with the prevalence of sarcopenia in men (OR = 1.993, 95% CI 1.511–2.629). PAF showed that diabetes accounted for 16.3% of observed sarcopenia cases. Maintaining NGR in the entire population could have prevented 38.5% of sarcopenia cases and 50.9% of severe sarcopenia cases.

Conclusions

Prediabetes and diabetes were independently associated with the prevalence and severity of sarcopenia in US population. Slowing down the progression of hyperglycemia could have prevented a significant proportion of sarcopenia cases.
Ant colony optimization-based solution to optimize load balancing and throughput for 5G and beyond heterogeneous networks
Authors: Alam Mohammed Jaber , Chugh Ritesh , Azad Salahuddin , Hossain Md Rahat
Published: June 2024

The escalating demand for data in wireless communication systems has posed significant challenges in recent years. This trend is predicted to continue, with explosive data usage and evolving quality of service demands from mobile users. The rapid increase in traffic demand, combined with the intricate nature of heterogeneous network (HetNet) scenarios, has significantly heightened the challenges confronting mobile network operators. These challenges encompass service quality, load distribution, coverage, and the overall user experience. Conventional approaches that prioritize maximum received power in the cell association mechanism tend to sustain network imbalances within the HetNets, making it difficult to cater for the diverse traffic requirements of mobile users. In this study, instead of focusing solely on enhancing individual user downlink rates, we maximize the number of users whose downlink needs are satisfied by integrating a cell range extension (CRE) technique with an ant colony optimization algorithm. Our proposed method considers both the workload of base stations and the signal to interference-plus-noise ratio of user devices to formulate an objective function aimed at calculating specific CRE bias values for individual small base stations. A comparative analysis of the proposed approach with existing techniques demonstrates its effectiveness. Simulation results underscore the success of our proposed strategy in meeting users’ throughput needs while reducing network imbalances and call drop rates.
A systematic map of evidence on the relationship between agricultural production and biodiversity in tropical rainforest areas
Authors: Apriyani Via , Holle Mukhlish JM , Mumbunan Sonny
Published: June 2024

Background

The tropical rainforest biome plays a significant role in providing habitats for terrestrial biodiversity and delivering ecosystem service values, contributing to agricultural production. However, the increasing demand for tropical commodities with high economic value threatens this humid ecosystem and its biodiversity. To our knowledge, no studies have systematically mapped the relationship between the impacts of agricultural production on biodiversity and the effects of biodiversity on agricultural production in tropical rainforest areas.

Methods

Since we were interested in systematically mapping the evidence measuring the impact of tropical agriculture on biodiversity (Map 1), and the vice versa relations, the influence of biodiversity on tropical agriculture production (Map 2), we developed a respective set of search strings, eligibility criteria, and subsequently performed independent searching, screening, and data coding processes. We searched articles from six peer-reviewed databases and 22 gray literature sources. Articles were screened based on the inclusion criteria at the title, abstract, and full-text levels. Individual articles that passed full-text screening were coded and synthesized to create heatmaps. Selected information of interest was also extracted and visualized in the graphics which were clustered based on the year of publication, geographical distribution, type of rainforest, exposure, outcome, farm commodity, and study comparators.

Review findings

Two heatmaps were generated from a contrasting number of references, with heatmap 1 extracted from 222 studies and heatmap 2 derived from 10 times fewer references (n = 20). In heatmap 1, impacts of land conversion to aboveground biodiversity and wild species and ecosystem functions in natural ecosystems were the most common relationships examined, with 115 articles and 62 articles, respectively. Conversely, heatmap 2 showed evidence that focused predominantly on the examination of the links between the impacts of genetic resource diversity on environmental factors and soil management in tropical agricultural production, with four articles each exploring these relations.

Conclusions

These systematic maps reveal that while studies investigating the impacts of tropical agricultural production on biodiversity were abundant, studies examining the impacts of biodiversity on tropical agricultural production were lacking despite both systematic maps experiencing an increasing trend of publication during 2000–2020. Map 1 emphasized the examination of the effects of land conversion on aboveground biodiversity, and on wild species and ecosystem functions. Map 2 highlighted the influence of crop genetic resources on environmental factors, and on soil management as the most frequently studied. The evidence cluster identified here can be the starting point for further systematic review study (to assess, for example, their cause–effect significance).
Pan-cancer analysis of the TRAF family genes and their correlation with prognosis, TME, immune and drug sensitivity
Authors: Yao Bin , Hu Weikang , Chen Yu , Li Jing , Jiang Kuirong , Dou Jin
Published: June 2024

Background

Tumor necrosis factor receptor-associated factors family genes play a pivotal role in tumorigenesis and metastasis, functioning as adapters or E3 ubiquitin ligases across various signaling pathways. To date, limited research has explored the association between tumor necrosis factor receptor-associated factors family genes and the clinicopathological characteristics of tumors, immunity, and the tumor microenvironment (TME). This comprehensive study investigates the relationship between tumor necrosis factor receptor-associated factors family and prognosis, TME, immune response, and drug sensitivity in a pan-cancer context.

Methods

Utilizing current public databases, this study examines the expression levels and prognostic significance of tumor necrosis factor receptor-associated factors family genes in a pan-cancer context through bioinformatic analysis. In addition, it investigates the correlation between tumor necrosis factor receptor-associated factors expression and various factors, including the TME, immune subtypes, stemness scores, and drug sensitivity in pan-cancer.

Results

Elevated expression levels of tumor necrosis factor receptor-associated factor 2, 3, 4, and 7 were observed across various cancer types. Patients exhibiting high expression of these genes generally faced a worse prognosis. Furthermore, a significant correlation was noted between the expression of tumor necrosis factor receptor-associated factors family genes and multiple dimensions of the TME, immune subtypes, and drug sensitivity.
Comparison of outcomes for general and local anesthesia in the management of nasal bone fractures: a meta-analysis
Authors: Xu Ting , Yi Xinsheng , Xia Shitong , Wu Sihai
Published: June 2024

Background

This meta-analysis aimed to perform a head-to-head comparison of the role of general anesthesia (GA) and local anesthesia (LA) in the management of patients with nasal bone fractures (NBFs).

Methods

PubMed, Embase, and Web of Science were comprehensively searched. Studies investigating the clinical outcomes of GA and LA in the management of NBFs were included. Pooled odds ratios (OR) with the respective 95% confidence intervals (CIs) were calculated. Heterogeneity between the included studies was evaluated. The risk of bias in the included studies was assessed.

Results

Eight studies were included in this meta-analysis. The pooled ORs for cosmetic results, residual septal deformity, the need for further surgery, patients’ satisfaction with the anesthesia procedure, and patients’ satisfaction with the surgery results were 0.70 (95% CI 0.18, 2.64; z = − 0.53, p = 0.5957), 1.11 (95% CI 0.37, 3.30; z = 0.18, p = 0.8558), 1.19 (95% CI 0.65, 2.20; z = 0.56, p = 0.5760), 1.57 (95% CI 0.92, 2.69; z = 1.65, p = 0.0982), and 1.00 (95% CI 0.55, 1.80; z = − 0.00, p = 0.9974).

Conclusions

Insignificant difference on clinical outcomes was observed between GA and LA in the manipulation of patients with NBFs, and the choice of anesthetic approach should be based on the tolerability of the methods and the severity of nasal fractures.
Bond Properties of CFRP Externally Bonded Reinforcement on Groove in Concrete
Authors: Han Zehong , Gao Jing , Song Huaihui , Xu Gongyi
Published: June 2024

Externally bonded reinforcement on groove (EBROG) is a significant reinforcement technology proposed by researchers to enhance the bond properties of reinforced concrete structural members. To understand the influence of groove size on concrete specimens of different strength, a total of 60 concrete specimens with 4 different strengths were cast with the single shear test in this paper, among which 48 EBROG specimens and 12 specimens with externally bonded reinforcement method (EBR) were used as the control group. The failure modes and failure mechanisms of specimens with various sizes and reinforcement methods were analyzed. Additionally, the test results of ultimate load, load–displacement curves, and bond-slip curves for specimens with different groove sizes were compared. The effectiveness of EBROG method in enhancing the ultimate load capacity at the bond interface of the specimens is proved. Furthermore, in situations where the volume of the groove was kept constant, the specimens with lower concrete strength and deeper groove exhibited superior bond properties. Also, the influence of groove width on bond properties was better than that of groove depth. Finally, the test results in this paper were compared with the prediction of the existing EBR and EBROG models to evaluate the performance of different models, and based on the original model, a prediction model for EBROG method in the groove region with higher accuracy was proposed.
Water vapor condensation prevention and risk rating evaluation based on Yang Can’s tomb
Authors: Shi Wentao , Liu Ping , Sun Bo , Wang Qian , Xie Xiaokun , Liang Yuyuan , Li Changqing
Published: June 2024

Temperature and humidity variations in burial stone relics can easily cause water vapor condensation, which is an important factor leading to their deterioration. However, the water vapor condensation mechanism and the evaluation of risk ratings have always been difficult problems in the protection of cultural relics. In this study, the water vapor condensation mechanism in Yang Can's tomb was comprehensively investigated through on-site monitoring, indoor experiments and software simulations, on the basis of which a physical model of water vapor condensation in this tomb was established and a water vapor condensation risk rating assessment method was proposed. The proposed method considers the difference between the dew point and wall temperatures within the tomb (dew–wall temperature difference) and the duration of water vapor condensation, and corresponding preventive and control measures were formulated for different risk ratings. The study revealed that when the wall temperature of the chamber is lower than the dew point temperature, water vapor starts to condense. The larger the dew–wall temperature difference is, the greater the risk of condensation. In addition, specific water vapor condensation prevention and control measures were proposed for Yang Can's tomb, and the prevention and control effects were simulated. The simulation results showed that favorable prevention and control effects could be achieved, and the proposed measures could be applied in practice. This study holds notable significance for investigating the water vapor condensation mechanism and evaluating the risk ratings of burial stone relics and provides a theoretical basis and reference for water vapor condensation prevention and control in burial stone relics.
Produced water treatment by semi-continuous sequential bioreactor and microalgae photobioreactor
Authors: Khairuddin Nur Farahah Mohd , Khan Nadeem , Sankaran Saravanan , Farooq Wasif , Ahmad Irshad , Aljundi Isam H.
Published: June 2024

Produced water (PW) from oil and gas exploration adversely affects aquatic life and living organisms, necessitating treatment before discharge to meet effluent permissible limits. This study first used activated sludge to pretreat PW in a sequential batch reactor (SBR). The pretreated PW then entered a 13 L photobioreactor (PBR) containing Scenedesmus obliquus microalgae culture. Initially, 10% of the PW mixed with 90% microalgae culture in the PBR. After the exponential growth of the microalgae, an additional 25% of PW was added to the PBR without extra nutrients. This study reported the growth performance of microalgae in the PBR as well as the reduction in effluent’s total organic carbon (TOC), total dissolved solids (TDS), electrical conductivity (EC), and heavy metals content. The results demonstrated removal efficiencies of 64% for TOC, 49.8% for TDS, and 49.1% for EC. The results also showed reductions in barium, iron, and manganese in the effluent by 95, 76, and 52%, respectively.
The neighborhood advantage: exploring the impact of negotiation costs on transaction satisfaction in local second-hand trading platforms
Authors: Park Jisoo , Lee Mi-ah , Kim Ha Youn
Published: June 2024

This study aimed to investigate the determinants of transaction satisfaction and intention to use local second-hand marketplace platforms, focusing on the impact of negotiation costs and the moderating influence of users’ sense of their neighborhood. Building on transaction cost theory, we conceptualized negotiation costs as a multidimensional construct that encompassed economic, performance, time, and psychological costs. Our findings revealed that economic and time costs had a significant negative effect on transaction satisfaction, whereas performance and psychological costs did not exhibit such an impact. Furthermore, transaction satisfaction positively influenced users’ intention to use the platform, thereby mediating the relationship between negotiation costs and intention to use. Additionally, we found that users’ sense of their neighborhood enhanced transaction satisfaction and acted as a moderator, attenuating the negative impact of negotiation costs on satisfaction. For users with a high sense of my neighborhood, the negative impact of economic, performance, and time costs on transaction satisfaction was attenuated. These findings contribute to a deeper understanding of consumer behavior on local second-hand trading platforms and emphasize the importance of social cues in shaping transaction satisfaction and intention to use. The implications of our study offer valuable insights for second-hand platform operators.
Racial and ethnic differences in the risk of recurrent preterm or small for gestational age births in the United States: a systematic review and stratified analysis
Authors: Dev Alka , Nagovich Justice , Maganti Srinija , Vitale Elaina , Blunt Heather , Allen Sophia E.
Published: June 2024

Background

The risk of recurrent adverse birth outcomes has been reported worldwide, but there are limited estimates of these risks by social subgroups such as race and ethnicity in the United States. We assessed racial and ethnic disparities in the risk of recurrent adverse birth outcomes, including preterm birth, low birthweight, fetal growth restriction, small for gestational age, stillbirth, and neonatal mortality in the U.S.

Methods

We searched MEDLINE, CINAHL Complete, Web of Science, and Scopus from the date of inception to April 5, 2022. We identified 3,540 articles for a title and abstract review, of which 80 were selected for full-text review. Studies were included if they focused on the recurrence of any of the six outcomes listed in the objectives. Study quality was assessed using the NIH Study Quality Assessment Tool. Heterogeneity across studies was too large for meta-analysis, but race and ethnicity-stratified estimates and tests for homogeneity results were reported.

Results

Six studies on recurrent preterm birth and small for gestational age were included. Pooled comparisons showed a higher risk of recurrent preterm birth and small for gestational age for all women. Stratified race comparisons showed a higher but heterogeneous risk of recurrence of preterm birth across Black and White women. Relative risks of recurrent preterm birth ranged from 2.02 [1.94, 2.11] to 2.86 [2.40, 3.39] for Black women and from 3.23 [3.07, 3.39] to 3.92 [3.35, 4.59] for White women. The evidence was weak for race and ethnicity stratification for Hispanic and Asian women for both outcomes.

Conclusions

Disparities exist in the recurrence of preterm birth, and race/ethnicity-concordant comparisons suggest race is an effect modifier for recurrent preterm birth for Black and White women. Due to the small number of studies, no conclusions could be made for small for gestational age or Hispanic and Asian groups. The results pose new research areas to better understand race-based differences in recurrent adverse birth outcomes.
Atomic cross-chain swap based on private key exchange
Authors: Zhu Zeshuo , Zhang Rui , Tao Yang
Published: June 2024

Atomic Cross-Chain Swap (ACCS) is one important topic in cryptocurrency, where users can securely and trustlessly exchange assets between two different blockchains. However, most known ACCS schemes assume specific scripting functionalities of the underlying blockchains, such as Hash Time Locked Contracts (HTLC). In addition, these schemes are typically only applicable to certain digital signature schemes, like Schnorr or Elliptic Curve Digital Signature Algorithm (ECDSA) signatures. In this paper, we propose a generic ACCS scheme, independent from the underlying blockchains. To the best of our knowledge, this is the first solution of this kind. Our results are as follows. First, we define a formal system model of ACCS. Next, we present a generic ACCS scheme meets our model. This scheme admits atomicity in cross-chain swaps without the need for a Trusted Third Party (TTP) and protects users’ privacy. Finally, by using the Non-Interactive Zero-Knowledge (NIZK) proof protocol as a tool, we instantiate our generic scheme for Elliptic Curve Discrete Logarithm Problem-based (ECDLP-based) signatures. In addition, we implement our scheme, and the experimental results show that our protocol outperforms the existing ACCS schemes, such as the HTLC-based schemes.
Cone and fruit impacts on understory flammability depend on traits and forest floor coverage
Authors: Willis John L. , Milton Tamara F. , Alexander Heather D.
Published: June 2024

Background

Understory flammability is affected by abscised plant tissue. Extensive research has shown how interspecific differences in leaf litter traits affect flammability; however, leaves represent only one component of the litter layer. Cones and fruit are also common constituents of the forest floor, yet surprisingly little is known about how flammability is affected by their presence. In this study, we ask how flammability is affected by cones and fruit trait differences, coverage differences, and varying species and coverage combinations. To address these questions, we compared cone and fruit morphological and chemical traits among longleaf pine, loblolly pine, shortleaf pine, sweetgum, post oak, and water oak. We also used burn trials to compare fire behavior of single and mixed-species treatments at three coverage levels (10% of plot area (low), 30% (medium), and 50% (high)) integrated within a common mixed-litter layer under field conditions in central Alabama, USA.

Results

Like other plant tissues, cone/fruit dry matter, carbon, and lignin content promote fuel consumption and flame height, while nitrogen suppresses flammability. Single-species treatments produced distinct patterns in fire behavior, with longleaf pine cones consistently showing higher percent fuel consumption, flame height, and maximum smoldering temperature than sweetgum capsular heads. Mixed-species treatment results were less consistent; however, at high coverage, a representative upland three-way mixture (longleaf pine + sweetgum + post oak) showed significantly greater fuel consumption and flame height relative to a bottomland three-way mixture (loblolly pine + sweetgum + water oak) at high coverage. Medium cone/fruit coverage maximized flammability in most single and multi-species treatments and produced non-additive fuel consumption in mixtures containing longleaf pine and sweetgum.

Conclusion

Our results confirm that individual species’ cone and fruit flammability often parallels that of litter. Fire behavior in mixture is generally driven by the most flammable constituent species, but this result changes with cone and fruit coverage. Collectively, these results indicate that cones/fruit identity and coverage play an important role in understory flammability and should be integrated into fire behavior modeling efforts in monocultures and mixtures.