bluuebunny/crossref_metadata_2025 huggingface dataset:
Figures S9-S16 from Endothelial Reprogramming Stimulated by Oncostatin M Promotes Inflammation and Tumorigenesis in VHL-Deficient Kidney Tissue
Authors: Nguyen-Tran Hieu-Huy , Nguyen Thi-Ngoc , Chen Chen-Yun , Hsu Tien
Published: April 2023

Supplementary Figures
Supplementary Movie S1B from Treatment with HIV-Protease Inhibitor Nelfinavir Identifies Membrane Lipid Composition and Fluidity as a Therapeutic Target in Advanced Multiple Myeloma
Authors: Besse Lenka , Besse Andrej , Stolze Sara C. , Sobh Amin , Zaal Esther A. , van der Ham Alwin J. , Ruiz Mario , Phuyal Santosh , Büchler Lorina , Sathianathan Marc , Florea Bogdan I. , Borén Jan , Ståhlman Marcus , Huber Julia , Bolomsky Arnold , Ludwig Heinz , Hannich J. Thomas , Loguinov Alex , Everts Bart , Berkers Celia R. , Pilon Marc , Farhan Hesso , Vulpe Christopher D. , Overkleeft Herman S. , Driessen Christoph
Published: April 2023

Cells pre-treated for 3h with 10 µM brefeldin A
Supplementary Data from Germline and Somatic Genetic Variants in the p53 Pathway Interact to Affect Cancer Risk, Progression, and Drug Response
Authors: Zhang Ping , Kitchen-Smith Isaac , Xiong Lingyun , Stracquadanio Giovanni , Brown Katherine , Richter Philipp H. , Wallace Marsha D. , Bond Elisabeth , Sahgal Natasha , Moore Samantha , Nornes Svanhild , De Val Sarah , Surakhy Mirvat , Sims David , Wang Xuting , Bell Douglas A. , Zeron-Medina Jorge , Jiang Yanyan , Ryan Anderson J. , Selfe Joanna L. , Shipley Janet , Kar Siddhartha , Pharoah Paul D. , Loveday Chey , Jansen Rick , Grochola Lukasz F. , Palles Claire , Protheroe Andrew , Millar Val , Ebner Daniel V. , Pagadala Meghana , Blagden Sarah P. , Maughan Timothy S. , Domingo Enric , Tomlinson Ian , Turnbull Clare , Carter Hannah , Bond Gareth L.
Published: April 2023

Supplementary Methods; Supplementary Figures S1-S5
Supplementary Data from Association between Smoking History and Tumor Mutation Burden in Advanced Non–Small Cell Lung Cancer
Authors: Wang Xinan , Ricciuti Biagio , Nguyen Tom , Li Xihao , Rabin Michael S. , Awad Mark M. , Lin Xihong , Johnson Bruce E. , Christiani David C.
Published: April 2023

Supplementary Data
Supplementary Figure S6 from AMBRA1 Promotes TGFβ Signaling via Nonproteolytic Polyubiquitylation of Smad4
Authors: Liu Jinquan , Yuan Bo , Cao Jin , Luo Hongjie , Gu Shuchen , Zhang Mengdi , Ding Ran , Zhang Long , Zhou Fangfang , Hung Mien-Chie , Xu Pinglong , Lin Xia , Jin Jianping , Feng Xin-Hua
Published: April 2023

AMBRA1 ablation restrains metastatic ability of breast cancer cells.
Supplementary movie 2 from Serine-Threonine Kinase TAO3-Mediated Trafficking of Endosomes Containing the Invadopodia Scaffold TKS5α Promotes Cancer Invasion and Tumor Growth
Authors: Iizuka Shinji , Quintavalle Manuela , Navarro Jose C. , Gribbin Kyle P. , Ardecky Robert J. , Abelman Matthew M. , Ma Chen-Ting , Sergienko Eduard , Zeng Fu-Yue , Pass Ian , Thomas George V. , McWeeney Shannon K. , Hassig Christian A. , Pinkerton Anthony B. , Courtneidge Sara A.
Published: April 2023

Effect of SBI-581 on TKS5alpha vesicle trafficking
Supplementary Figure S4 from AMBRA1 Promotes TGFβ Signaling via Nonproteolytic Polyubiquitylation of Smad4
Authors: Liu Jinquan , Yuan Bo , Cao Jin , Luo Hongjie , Gu Shuchen , Zhang Mengdi , Ding Ran , Zhang Long , Zhou Fangfang , Hung Mien-Chie , Xu Pinglong , Lin Xia , Jin Jianping , Feng Xin-Hua
Published: April 2023

AMBRA1 interacts with Smad4 physiologically and increases the transcriptional activity of Smad4.
Supplementary Figure S3 from AMBRA1 Promotes TGFβ Signaling via Nonproteolytic Polyubiquitylation of Smad4
Authors: Liu Jinquan , Yuan Bo , Cao Jin , Luo Hongjie , Gu Shuchen , Zhang Mengdi , Ding Ran , Zhang Long , Zhou Fangfang , Hung Mien-Chie , Xu Pinglong , Lin Xia , Jin Jianping , Feng Xin-Hua
Published: April 2023

CRL4-AMBRA1 promotes Smad4 poly-ubiquitylation via the K63 linkage.
Supplementary Data from USP48 Is Upregulated by Mettl14 to Attenuate Hepatocellular Carcinoma via Regulating SIRT6 Stabilization
Authors: Du Lutao , Li Yang , Kang Min , Feng Maoxiao , Ren Yidan , Dai Hongliang , Wang Yumin , Wang Yunshan , Tang Bo
Published: April 2023

Supplementary Data
Supplementary Data File S3 from Targeting the HuR Oncogenic Role with a New Class of Cytoplasmic Dimerization Inhibitors
Authors: Filippova Natalia , Yang Xiuhua , Ananthan Subramaniam , Calano Jennifer , Pathak Vibha , Bratton Larry , Vekariya Rakesh H. , Zhang Sixue , Ofori Edward , Hayward Emily N. , Namkoong David , Crossman David K. , Crowley Michael R. , King Peter H. , Mobley James , Nabors Louis B.
Published: April 2023

File (samples Report Nabors 061019-2-top hits) provides proteomic annotated data for top hits after neurosphere treatment with SRI-42127 compound versus control for Fig. S13.
Supplementary Table S1 from α1-Acid Glycoprotein Enhances the Immunosuppressive and Protumor Functions of Tumor-Associated Macrophages
Authors: Matsusaka Kotaro , Fujiwara Yukio , Pan Cheng , Esumi Shigeyuki , Saito Yoichi , Bi Jing , Nakamura Yuka , Mukunoki Ayumi , Takeo Toru , Nakagata Naomi , Yoshii Daiki , Fukuda Ryo , Nagasaki Taisei , Tanaka Ryusei , Komori Hisakazu , Maeda Hitoshi , Watanabe Hiroshi , Tamada Koji , Komohara Yoshihiro , Maruyama Toru
Published: April 2023

The list of antibodies for western blot analysis and primers for RT-qPCR
Supplementary Figures from ATR/ATM-Mediated Phosphorylation of BRCA1 T1394 Promotes Homologous Recombinational Repair and G2–M Checkpoint Maintenance
Authors: Foo Tzeh K. , Vincelli Gabriele , Huselid Eric , Her Joonyoung , Zheng Haiyan , Simhadri Srilatha , Wang Meiling , Huo Yanying , Li Tao , Yu Xiaochun , Li Hong , Zhao Weixing , Bunting Samuel F. , Xia Bing
Published: April 2023

Figures S1-S5
Supplementary Data_v1 from Metabolic Enzyme DLST Promotes Tumor Aggression and Reveals a Vulnerability to OXPHOS Inhibition in High-Risk Neuroblastoma
Authors: Anderson Nicole M. , Qin Xiaodan , Finan Jennifer M. , Lam Andrew , Athoe Jacob , Missiaen Rindert , Skuli Nicolas , Kennedy Annie , Saini Amandeep S. , Tao Ting , Zhu Shizhen , Nissim Itzhak , Look A. Thomas , Qing Guoliang , Simon M. Celeste , Feng Hui
Published: April 2023

Supplemental Method and Materials; Supplemental Figure Legends; Goes with the Longer version of the paper
Supplementary Figure S1 from α1-Acid Glycoprotein Enhances the Immunosuppressive and Protumor Functions of Tumor-Associated Macrophages
Authors: Matsusaka Kotaro , Fujiwara Yukio , Pan Cheng , Esumi Shigeyuki , Saito Yoichi , Bi Jing , Nakamura Yuka , Mukunoki Ayumi , Takeo Toru , Nakagata Naomi , Yoshii Daiki , Fukuda Ryo , Nagasaki Taisei , Tanaka Ryusei , Komori Hisakazu , Maeda Hitoshi , Watanabe Hiroshi , Tamada Koji , Komohara Yoshihiro , Maruyama Toru
Published: April 2023

Effects of AGP on PD-L1 expression and STAT signaling cascade in macrophages. HMDMs were incubated with the indicated concentrations of AGP for 24 h (A) or with AGP (1 mg/mL) for the indicated times (B), followed by the determination of PD-L1 and β-actin expression by western blot analysis. HMDMs were incubated with the indicated concentrations of AGP for 24 h (C) or with AGP (1 mg/mL) for the indicated times (D), followed by the determination of PD-L1, p-STAT1, STAT1, p-STAT3, STAT3, and β-actin expression by western blot analysis. HMDMs were incubated with AGP (1 mg/mL) in the presence of nifuroxazide (200 μM) for 24 h, followed by the determination of PD-L1, pSTAT1, STAT1, and β-actin expression by western blot analysis (E). The experiments were repeated three times with nearly identical results.
Figure S5 from Metabolic Enzyme DLST Promotes Tumor Aggression and Reveals a Vulnerability to OXPHOS Inhibition in High-Risk Neuroblastoma
Authors: Anderson Nicole M. , Qin Xiaodan , Finan Jennifer M. , Lam Andrew , Athoe Jacob , Missiaen Rindert , Skuli Nicolas , Kennedy Annie , Saini Amandeep S. , Tao Ting , Zhu Shizhen , Nissim Itzhak , Look A. Thomas , Qing Guoliang , Simon M. Celeste , Feng Hui
Published: April 2023

Sup. Figure 5
Figure S2 from Metabolic Enzyme DLST Promotes Tumor Aggression and Reveals a Vulnerability to OXPHOS Inhibition in High-Risk Neuroblastoma
Authors: Anderson Nicole M. , Qin Xiaodan , Finan Jennifer M. , Lam Andrew , Athoe Jacob , Missiaen Rindert , Skuli Nicolas , Kennedy Annie , Saini Amandeep S. , Tao Ting , Zhu Shizhen , Nissim Itzhak , Look A. Thomas , Qing Guoliang , Simon M. Celeste , Feng Hui
Published: April 2023

Sup. Figure 2
Supplementary Data from Allosteric Inhibition of HER2 by Moesin-Mimicking Compounds Targets HER2-Positive Cancers and Brain Metastases
Authors: Faure Camille , Djerbi-Bouillié Rym , Domingot Anaïs , Bouzinba-Segard Haniaa , Taouji Saïd , Saidi Yanis , Bernard Sandra , Carallis Floriane , Rothe-Walther Romy , Lenormand Jean-Luc , Chevet Eric , Bourdoulous Sandrine
Published: April 2023

Supplementary methods and data
Figure S2 from An AIB1 Isoform Alters Enhancer Access and Enables Progression of Early-Stage Triple-Negative Breast Cancer
Authors: Sharif Ghada M. , Campbell Moray J. , Nasir Apsra , Sengupta Surojeet , Graham Garrett T. , Kushner Max H. , Kietzman William B. , Schmidt Marcel O. , Pearson Gray W. , Loudig Olivier , Fineberg Susan , Wellstein Anton , Riegel Anna T.
Published: April 2023

A) Quantification of the number of Zebrafish embryos with DCIS or DCIS-Î"4-hy cells that have extravasated out of the blood vessels and into the neighboring tissue. p=0.57. B) Quantification of the number of Zebrafish embryos with MCF10A, MCF10A-Î"4 or mixed cells that have extravasated out of the blood vessels and into the neighboring tissue. In the mixed cell population, only MCF10A parental line was fluorescently labeled and scored for extravasation. MCF10A and MCF10A-Î"4 are mixed at a 4:1 ratio. C) Invasion assay of an endothelial monolayer (HUVEC) using ECIS. MCFDCIS cells were treated with conditioned media (CM) from MCFDCIS-Î"4 cells for 4 hours before added to the endothelial monolayer, and vice versa. No cells added to the endothelial monolayer as a negative control. D) A schematic showing a three-chambered co-culture system. Top chamber has electrodes underneath a porous membrane to detect migrating cells. Middle chamber is only permeable to factors but not cells. Bottom chamber harbors cells that can crosstalk with migrating cells through secreted factors. E) Real-time migration rate of MCFDCIS and MCFDCIS-Î"4 in co-culture chambers. F) MCFDCIS and MCFDCIS-Î"4 cells were aggregated separately then embedded in 80% col I and 20% Matrigel together to monitor their crosstalk as separate spheres. Scale bar = 50Î¼m.
Supplementary File S5 from Pan-Cancer Drivers Are Recurrent Transcriptional Regulatory Heterogeneities in Early-Stage Luminal Breast Cancer
Authors: Singh Shambhavi , Sutcliffe Matthew D. , Repich Kathy , Atkins Kristen A. , Harvey Jennifer A. , Janes Kevin A.
Published: April 2023

MATLAB code (saved as a txt file) for the three-state Monte Carlo simulations of stochastic profiling described in Supplementary Fig. S10.
Supplementary Data from Pan-Cancer Drivers Are Recurrent Transcriptional Regulatory Heterogeneities in Early-Stage Luminal Breast Cancer
Authors: Singh Shambhavi , Sutcliffe Matthew D. , Repich Kathy , Atkins Kristen A. , Harvey Jennifer A. , Janes Kevin A.
Published: April 2023

Supplementary Figures S1-S12, Supplementary Tables ST1-ST3, and Supplementary File captions S1-S9
Supplementary Table S1-4 from M6A Demethylase ALKBH5 Regulates PD-L1 Expression and Tumor Immunoenvironment in Intrahepatic Cholangiocarcinoma
Authors: Qiu Xinyao , Yang Shuai , Wang Shan , Wu Jianmin , Zheng Bo , Wang Kaiting , Shen Siyun , Jeong Seogsong , Li Zhixuan , Zhu Yanjing , Wu Tong , Wu Xuan , Wu Rui , Liu Weiwei , Wang Hong-Yang , Chen Lei
Published: April 2023

Supplementary Table S1. Clinical characteristics of 84 ICC patients depending on ALKBH5 expression levels. Supplementary Table S2. Clinical characteristics of 6 ICC specimens receiving immunotherapy. Supplementary Table S3: m6A-seq identified m6A peaks on PD-L1 mRNA. m6A peaks on PD-L1 mRNA and its corresponding primers for quantitative RT-PCR. Supplementary Table S4. m6A peaks in PD-L1 mRNA in m6A-Seq data from GSE87515.
Table S6 from GLUT1 Expression in Tumor-Associated Neutrophils Promotes Lung Cancer Growth and Resistance to Radiotherapy
Authors: Ancey Pierre-Benoit , Contat Caroline , Boivin Gael , Sabatino Silvia , Pascual Justine , Zangger Nadine , Perentes Jean Yannis , Peters Solange , Abel E. Dale , Kirsch David G. , Rathmell Jeffrey C. , Vozenin Marie-Catherine , Meylan Etienne
Published: April 2023

Significant differentially expressed genes in CD45- cells in control versus Glut1KO TAN conditions.
Table S4 from GLUT1 Expression in Tumor-Associated Neutrophils Promotes Lung Cancer Growth and Resistance to Radiotherapy
Authors: Ancey Pierre-Benoit , Contat Caroline , Boivin Gael , Sabatino Silvia , Pascual Justine , Zangger Nadine , Perentes Jean Yannis , Peters Solange , Abel E. Dale , Kirsch David G. , Rathmell Jeffrey C. , Vozenin Marie-Catherine , Meylan Etienne
Published: April 2023

Significant differentially expressed genes in control versus Glut1KO TANs.
Supplementary Data from A Wnt-Independent LGR4–EGFR Signaling Axis in Cancer Metastasis
Authors: Yue Fei , Jiang Weiyu , Ku Amy T. , Young Adelaide I.J. , Zhang Weijie , Souto Eric P. , Gao Yankun , Yu Zihan , Wang Yi , Creighton Chad J. , Nagi Chandandeep , Wang Tao , Hilsenbeck Susan G. , Feng Xin-Hua , Huang Shixia , Coarfa Cristian , Zhang Xiang H.-F. , Liu Qingyun , Lin Xia , Li Yi
Published: April 2023

Supplementary figures 1-8
Table S2 from GLUT1 Expression in Tumor-Associated Neutrophils Promotes Lung Cancer Growth and Resistance to Radiotherapy
Authors: Ancey Pierre-Benoit , Contat Caroline , Boivin Gael , Sabatino Silvia , Pascual Justine , Zangger Nadine , Perentes Jean Yannis , Peters Solange , Abel E. Dale , Kirsch David G. , Rathmell Jeffrey C. , Vozenin Marie-Catherine , Meylan Etienne
Published: April 2023

Significant differentially expressed genes in TANs versus HLNs.
Supplementary Data from A Wnt-Independent LGR4–EGFR Signaling Axis in Cancer Metastasis
Authors: Yue Fei , Jiang Weiyu , Ku Amy T. , Young Adelaide I.J. , Zhang Weijie , Souto Eric P. , Gao Yankun , Yu Zihan , Wang Yi , Creighton Chad J. , Nagi Chandandeep , Wang Tao , Hilsenbeck Susan G. , Feng Xin-Hua , Huang Shixia , Coarfa Cristian , Zhang Xiang H.-F. , Liu Qingyun , Lin Xia , Li Yi
Published: April 2023

Mass spectrometry identifying EGFR-binding proteins
Supplementary Data from Inhibition of the FACT Complex Targets Aberrant Hedgehog Signaling and Overcomes Resistance to Smoothened Antagonists
Authors: Mo Jialin , Liu Fang , Sun Xi , Huang Hongting , Tan Kezhe , Zhao Xiaojing , Li Rui , Jiang Wenyan , Sui Yi , Chen Xiaosong , Shen Kunwei , Zhang Liye , Ma Jie , Zhao Kewen , Tang Yujie
Published: April 2023

Supplementary Table S5_PCR and qPCR primers
Table S1 from Nuclear Receptor Coactivator NCOA3 Regulates UV Radiation–Induced DNA Damage and Melanoma Susceptibility
Authors: de Semir David , Bezrookove Vladimir , Nosrati Mehdi , Dar Altaf A. , Miller James R. , Leong Stanley P. , Kim Kevin B. , Liao Wilson , Soroceanu Liliana , McAllister Sean , Debs Robert J. , Schadendorf Dirk , Leachman Sancy A. , Cleaver James E. , Kashani-Sabet Mohammed
Published: April 2023

Supplementary Table 1
Supplementary Data from GAS7 Deficiency Promotes Metastasis in MYCN-Driven Neuroblastoma
Authors: Dong Zhiwei , Yeo Kok Siong , Lopez Gonzalo , Zhang Cheng , Dankert Eggum Erin N. , Rokita Jo Lynne , Ung Choong Yong , Levee Taylor M. , Her Zuag Paj , Howe Cassie J. , Hou Xiaonan , van Ree Janine H. , Li Shuai , He Shuning , Tao Ting , Fritchie Karen , Torres-Mora Jorge , Lehman Julia S. , Meves Alexander , Razidlo Gina L. , Rathi Komal S. , Weroha S. John , Look A. Thomas , van Deursen Jan M. , Li Hu , Westendorf Jennifer J. , Maris John M. , Zhu Shizhen
Published: April 2023

SUPPLEMENTARY TABLES, FIGURES AND FIGURE LEGENDS
Figure S2 from Nuclear Receptor Coactivator NCOA3 Regulates UV Radiation–Induced DNA Damage and Melanoma Susceptibility
Authors: de Semir David , Bezrookove Vladimir , Nosrati Mehdi , Dar Altaf A. , Miller James R. , Leong Stanley P. , Kim Kevin B. , Liao Wilson , Soroceanu Liliana , McAllister Sean , Debs Robert J. , Schadendorf Dirk , Leachman Sancy A. , Cleaver James E. , Kashani-Sabet Mohammed
Published: April 2023

Supplementary Figure 2
Table S8 from Alterations in the Global Proteome and Phosphoproteome in Third Generation EGFR TKI Resistance Reveal Drug Targets to Circumvent Resistance
Authors: Zhang Xu , Maity Tapan K. , Ross Karen E. , Qi Yue , Cultraro Constance M. , Bahta Meriam , Pitts Stephanie , Keswani Meghana , Gao Shaojian , Nguyen Khoa Dang P. , Cowart Julie , Kirkali Fatos , Wu Cathy , Guha Udayan
Published: April 2023

Table S8
Table S5 from Alterations in the Global Proteome and Phosphoproteome in Third Generation EGFR TKI Resistance Reveal Drug Targets to Circumvent Resistance
Authors: Zhang Xu , Maity Tapan K. , Ross Karen E. , Qi Yue , Cultraro Constance M. , Bahta Meriam , Pitts Stephanie , Keswani Meghana , Gao Shaojian , Nguyen Khoa Dang P. , Cowart Julie , Kirkali Fatos , Wu Cathy , Guha Udayan
Published: April 2023

Table S5
Table S4 from Alterations in the Global Proteome and Phosphoproteome in Third Generation EGFR TKI Resistance Reveal Drug Targets to Circumvent Resistance
Authors: Zhang Xu , Maity Tapan K. , Ross Karen E. , Qi Yue , Cultraro Constance M. , Bahta Meriam , Pitts Stephanie , Keswani Meghana , Gao Shaojian , Nguyen Khoa Dang P. , Cowart Julie , Kirkali Fatos , Wu Cathy , Guha Udayan
Published: April 2023

Table S4
Supplementary Materials and Methods from SLFN11 Inactivation Induces Proteotoxic Stress and Sensitizes Cancer Cells to Ubiquitin Activating Enzyme Inhibitor TAK-243
Authors: Murai Yasuhisa , Jo Ukhyun , Murai Junko , Jenkins Lisa M. , Huang Shar-Yin N. , Chakka Sirisha , Chen Lu , Cheng Ken , Fukuda Shinsaku , Takebe Naoko , Pommier Yves
Published: April 2023

Colony forming assay, Apoptosis assay, Complementation of wild-type SLFN11, Establishment of doxycycline-inducible SLFN11 expressing cells, Proximity ligation assay, RNAi screening
Supplementary Table 1 from E2F1 and E2F2-Mediated Repression of CPT2 Establishes a Lipid-Rich Tumor-Promoting Environment
Authors: González-Romero Francisco , Mestre Daniela , Aurrekoetxea Igor , O'Rourke Colm J. , Andersen Jesper B. , Woodhoo Ashwin , Tamayo-Caro Miguel , Varela-Rey Marta , Palomo-Irigoyen Marta , Gómez-Santos Beatriz , de Urturi Diego Sáenz , Núñez-García Maitane , García-Rodríguez Juan L. , Fernández-Ares Larraitz , Buqué Xabier , Iglesias-Ara Ainhoa , Bernales Irantzu , De Juan Virginia Gutierrez , Delgado Teresa C. , Goikoetxea-Usandizaga Naroa , Lee Richard , Bhanot Sanjay , Delgado Igotz , Perugorria Maria J. , Errazti Gaizka , Mosteiro Lorena , Gaztambide Sonia , Martinez de la Piscina Idoia , Iruzubieta Paula , Crespo Javier , Banales Jesus M. , Martínez-Chantar Maria L. , Castaño Luis , Zubiaga Ana M. , Aspichueta Patricia
Published: April 2023

Supplementary Table 1
Supplementary Figure 6 from YAP and β-Catenin Cooperate to Drive Oncogenesis in Basal Breast Cancer
Authors: Quinn Hazel M. , Vogel Regina , Popp Oliver , Mertins Philipp , Lan Linxiang , Messerschmidt Clemens , Landshammer Alexandro , Lisek Kamil , Château-Joubert Sophie , Marangoni Elisabetta , Koren Elle , Fuchs Yaron , Birchmeier Walter
Published: April 2023

Supplementary figure related to figure 6. Supplementary Fig. 6. YAP controls β-catenin activity.
Supplementary Table S2 from Supraphysiologic Testosterone Induces Ferroptosis and Activates Immune Pathways through Nucleophagy in Prostate Cancer
Authors: Kumar Rajendra , Mendonca Janet , Owoyemi Olutosin , Boyapati Kavya , Thomas Naiju , Kanacharoen Suthicha , Coffey Max , Topiwala Deven , Gomes Carolina , Ozbek Busra , Jones Tracy , Rosen Marc , Dong Liang , Wiens Sadie , Brennen W. Nathaniel , Isaacs John T. , De Marzo Angelo M. , Markowski Mark C. , Antonarakis Emmanuel S. , Qian David Z. , Pienta Kenneth J. , Pardoll Drew M. , Carducci Michael A. , Denmeade Samuel R. , Kachhap Sushant K.
Published: April 2023

List of antibodies used
Supplementary Figures from Supraphysiologic Testosterone Induces Ferroptosis and Activates Immune Pathways through Nucleophagy in Prostate Cancer
Authors: Kumar Rajendra , Mendonca Janet , Owoyemi Olutosin , Boyapati Kavya , Thomas Naiju , Kanacharoen Suthicha , Coffey Max , Topiwala Deven , Gomes Carolina , Ozbek Busra , Jones Tracy , Rosen Marc , Dong Liang , Wiens Sadie , Brennen W. Nathaniel , Isaacs John T. , De Marzo Angelo M. , Markowski Mark C. , Antonarakis Emmanuel S. , Qian David Z. , Pienta Kenneth J. , Pardoll Drew M. , Carducci Michael A. , Denmeade Samuel R. , Kachhap Sushant K.
Published: April 2023

Supplementary Figures S1-S9
Supplementary Data from N6-Methyladenosine Regulates mRNA Stability and Translation Efficiency of KRT7 to Promote Breast Cancer Lung Metastasis
Authors: Chen Feng , Chen Zhuojia , Guan Tao , Zhou Yan , Ge Lichen , Zhang Haisheng , Wu Yingmin , Jiang Guan-Min , He Weiling , Li Jiexin , Wang Hongsheng
Published: April 2023

Table S1
Movie S2 from Cytoplasmic Localization of Prostate-Specific Membrane Antigen Inhibitors May Confer Advantages for Targeted Cancer Therapies
Authors: Matthias Jessica , Engelhardt Johann , Schäfer Martin , Bauder-Wüst Ulrike , Meyer Philipp T. , Haberkorn Uwe , Eder Matthias , Kopka Klaus , Hell Stefan W. , Eder Ann-Christin
Published: April 2023

LNCaP control holographic
Supplementary Data from Targeting KDM6A Suppresses SREBP1c-Dependent Lipid Metabolism and Prostate Tumorigenesis
Authors: Tang Donge , Dai Yong , Xu Songhui
Published: April 2023

Supplementary Data from Targeting KDM6A Suppresses SREBP1c-Dependent Lipid Metabolism and Prostate Tumorigenesis
Table S1 from A Dual PI3K/HDAC Inhibitor Induces Immunogenic Ferroptosis to Potentiate Cancer Immune Checkpoint Therapy
Authors: Fan Fushun , Liu Pei , Bao Rudi , Chen Jian , Zhou Minhua , Mo Zhenxian , Ma Yaru , Liu Haiqi , Zhou Yiping , Cai Xiong , Qian Changgeng , Liu Xinjian
Published: April 2023

Oligonucleotides (primers) used in the study
Figure S5 from Targeting the IRE1α/XBP1 Endoplasmic Reticulum Stress Response Pathway in ARID1A-Mutant Ovarian Cancers
Authors: Zundell Joseph A. , Fukumoto Takeshi , Lin Jianhuang , Fatkhudinov Nail , Nacarelli Timothy , Kossenkov Andrew V. , Liu Qin , Cassel Joel , Hu Chih-Chi Andrew , Wu Shuai , Zhang Rugang
Published: April 2023

Figure S5 shows that B-I09 is not effective against ARID1A wildtype OCCCs.
Supplementary Table 8 from Reorganization of the 3D Genome Pinpoints Noncoding Drivers of Primary Prostate Tumors
Authors: Hawley James R. , Zhou Stanley , Arlidge Christopher , Grillo Giacomo , Kron Ken J. , Hugh-White Rupert , van der Kwast Theodorus H. , Fraser Michael , Boutros Paul C. , Bristow Robert G. , Lupien Mathieu
Published: April 2023

H3K27ac peaks identified in each of the 12 primary PCa patients. Raw sequencing data as previously published was remapped to the hg38 reference genome.
Supplementary Table 6 from Reorganization of the 3D Genome Pinpoints Noncoding Drivers of Primary Prostate Tumors
Authors: Hawley James R. , Zhou Stanley , Arlidge Christopher , Grillo Giacomo , Kron Ken J. , Hugh-White Rupert , van der Kwast Theodorus H. , Fraser Michael , Boutros Paul C. , Bristow Robert G. , Lupien Mathieu
Published: April 2023

SV breakpoints detected by Hi-C in each tumour sample.
Supplementary Table 1 from Reorganization of the 3D Genome Pinpoints Noncoding Drivers of Primary Prostate Tumors
Authors: Hawley James R. , Zhou Stanley , Arlidge Christopher , Grillo Giacomo , Kron Ken J. , Hugh-White Rupert , van der Kwast Theodorus H. , Fraser Michael , Boutros Paul C. , Bristow Robert G. , Lupien Mathieu
Published: April 2023

Clinical information of samples involved in this study.
Supplementary Figure 1 from Reorganization of the 3D Genome Pinpoints Noncoding Drivers of Primary Prostate Tumors
Authors: Hawley James R. , Zhou Stanley , Arlidge Christopher , Grillo Giacomo , Kron Ken J. , Hugh-White Rupert , van der Kwast Theodorus H. , Fraser Michael , Boutros Paul C. , Bristow Robert G. , Lupien Mathieu
Published: April 2023

Sample processing and TAD similarity between samples.
Supplementary Figure from JNK Signaling Promotes Bladder Cancer Immune Escape by Regulating METTL3-Mediated m6A Modification of PD-L1 mRNA
Authors: Ni Zegui , Sun Pengli , Zheng Jin , Wu Mingqing , Yang Congcong , Cheng Maosheng , Yin Mingwei , Cui Chengying , Wang Guangxian , Yuan Lin , Gao Qian , Li Yang
Published: April 2023

Supplementary Figure from JNK Signaling Promotes Bladder Cancer Immune Escape by Regulating METTL3-Mediated m6A Modification of PD-L1 mRNA
Supplementary Table 2 from EGFR Inhibition Enhances the Cellular Uptake and Antitumor-Activity of the HER3 Antibody–Drug Conjugate HER3–DXd
Authors: Haikala Heidi M. , Lopez Timothy , Köhler Jens , Eser Pinar O. , Xu Man , Zeng Qing , Teceno Tyler J. , Ngo Kenneth , Zhao Yutong , Ivanova Elena V. , Bertram Arrien A. , Leeper Brittaney A. , Chambers Emily S. , Adeni Anika E. , Taus Luke J. , Kuraguchi Mari , Kirschmeier Paul T. , Yu Channing , Shiose Yoshinobu , Kamai Yasuki , Qiu Yang , Paweletz Cloud P. , Gokhale Prafulla C. , Jänne Pasi A.
Published: April 2023

Summary of EGFR inhibitor resistant patient-derived xenografts.
Supplementary Data from Oncogenic circRNA C190 Promotes Non–Small Cell Lung Cancer via Modulation of the EGFR/ERK Pathway
Authors: Ishola Afeez Adekunle , Chien Chian-Shiu , Yang Yi-Ping , Chien Yueh , Yarmishyn Aliaksandr A. , Tsai Ping-Hsing , Chen Jerry Chieh-Yu , Hsu Po-Kuei , Luo Yung-Hung , Chen Yuh-Min , Liang Kung-Hou , Lan Yuan-Tzu , Huo Teh-Ia , Ma Hsin-I. , Chen Ming-Teh , Wang Mong-Lien , Chiou Shih-Hwa
Published: April 2023

List of differentially expressed genes from RNA-seq
Supplementary Table from Inhibition of PIM Kinases in DLBCL Targets MYC Transcriptional Program and Augments the Efficacy of Anti-CD20 Antibodies
Authors: Szydłowski Maciej , Garbicz Filip , Jabłońska Ewa , Górniak Patryk , Komar Dorota , Pyrzyńska Beata , Bojarczuk Kamil , Prochorec-Sobieszek Monika , Szumera-Ciećkiewicz Anna , Rymkiewicz Grzegorz , Cybulska Magdalena , Statkiewicz Małgorzata , Gajewska Marta , Mikula Michał , Gołas Aniela , Domagała Joanna , Winiarska Magdalena , Graczyk-Jarzynka Agnieszka , Białopiotrowicz Emilia , Polak Anna , Barankiewicz Joanna , Puła Bartosz , Pawlak Michał , Nowis Dominika , Golab Jakub , Tomirotti Andrea M. , Brzózka Krzysztof , Pacheco-Blanco Mariana , Kupcova Kristyna , Green Michael R. , Havranek Ondrej , Chapuy Bjoern , Juszczyński Przemysław
Published: April 2023

Supplemental Table 1
Supplementary Data from Rab13 Sustains Breast Cancer Stem Cells by Supporting Tumor–Stroma Cross-talk
Authors: Wang Hui , Xu Haibo , Chen Wei , Cheng Mei , Zou Li , Yang Qin , Chan Chi Bun , Zhu Hao , Chen Ceshi , Nie Jianyun , Jiao Baowei
Published: April 2023

Supplementary Data from Rab13 Sustains Breast Cancer Stem Cells by Supporting Tumor–Stroma Cross-talk
Supplementary Figure from Disrupting Circadian Rhythm via the PER1–HK2 Axis Reverses Trastuzumab Resistance in Gastric Cancer
Authors: Wang Jiao , Huang Qiong , Hu Xingbin , Zhang Shuyi , Jiang Yu , Yao Guangyu , Hu Kongzhen , Xu Xin , Liang Bishan , Wu Qijing , Ma Zhenfeng , Wang Yawen , Wang Chunlin , Wu Zhenzhen , Rong Xiaoxiang , Liao Wangjun , Shi Min
Published: April 2023

Supplementary Figure from Disrupting Circadian Rhythm via the PER1–HK2 Axis Reverses Trastuzumab Resistance in Gastric Cancer
Supplementary Figure from Integrated Metabolic Profiling and Transcriptional Analysis Reveals Therapeutic Modalities for Targeting Rapidly Proliferating Breast Cancers
Authors: Liao Chengheng , Glodowski Cherise Ryan , Fan Cheng , Liu Juan , Mott Kevin R. , Kaushik Akash , Vu Hieu , Locasale Jason W. , McBrayer Samuel K. , DeBerardinis Ralph J. , Perou Charles M. , Zhang Qing
Published: April 2023

Supplementary Figure from Integrated Metabolic Profiling and Transcriptional Analysis Reveals Therapeutic Modalities for Targeting Rapidly Proliferating Breast Cancers
Supplemental Tables S1-S12 from Genomic and Transcriptomic Analysis of Relapsed and Refractory Childhood Solid Tumors Reveals a Diverse Molecular Landscape and Mechanisms of Immune Evasion
Authors: Byron Sara A. , Hendricks William P.D. , Nagulapally Abhinav B. , Kraveka Jacqueline M. , Ferguson William S. , Brown Valerie I. , Eslin Don E. , Mitchell Deanna , Cornelius Albert , Roberts William , Isakoff Michael S. , Oesterheld Javier E. , Wada Randal K. , Rawwas Jawhar , Neville Kathleen , Zage Peter E. , Harrod Virginia L. , Bergendahl Genevieve , VanSickle Elizabeth , Dykema Karl , Bond Jeffrey , Chou Hsien-Chao , Wei Jun S. , Wen Xinyu , Reardon Hue V. , Roos Alison , Nasser Sara , Izatt Tyler , Enriquez Daniel , Hegde Apurva M. , Cisneros Faith , Christofferson Austin , Turner Bryce , Szelinger Szabolcs , Keats Jonathan J. , Halperin Rebecca F. , Khan Javed , Saulnier Sholler Giselle L. , Trent Jeffrey M.
Published: April 2023

Table S1. Extended Cohort Annotations. Table S2. Mutational Signatures. Table S3. GISTIC Copy Number Analysis. Table S4. Somatic Variants in Relapsed/Refractory Childhood Solid Tumors (n=184 Patients with T/N WES). Table S5. Clinvar Pathogenic and Likely Pathogenic Germline Variants in Relapsed/Refractory Childhood Solid Tumors(n=184 Patients with T/N WES). Table S6. Gene Lists. Table S7. Log2(TPM+1) Values for the 2,199 Most Variable Genes Expressed Across the Cohort of Relapsed/Refractory Childhood Solid Tumors with RNA-seq (n=245). Table S8. Differential Expression Analysis of 2,199 Most Variable Genes Among Clusters. Table S9. Genes Filtered for COSMIC, Transcription Factors and Potential Drug Targets from Table S8 with log2FC greater than or equal to 2. Table S10. Differential Expression Analysis Among C3a, C3b, and C3c Subclusters. Table S11. Samples Falling in Clusters C3a-C3c and Genes that are Uniformly Highly Expressed in the Clusters. Table S12. Longitudinal Samples.
Supplementary Data from Comprehensive Analysis of Metabolic Isozyme Targets in Cancer
Authors: Marczyk Michal , Gunasekharan Vignesh , Casadevall David , Qing Tao , Foldi Julia , Sehgal Raghav , Shan Naing Lin , Blenman Kim R.M. , O'Meara Tess A. , Umlauf Sheila , Surovtseva Yulia V. , Muthusamy Viswanathan , Rinehart Jesse , Perry Rachel J. , Kibbey Richard , Hatzis Christos , Pusztai Lajos
Published: April 2023

Supplementary Data from Comprehensive Analysis of Metabolic Isozyme Targets in Cancer
Supplementary Data from Aberrant RNA Splicing Is a Primary Link between Genetic Variation and Pancreatic Cancer Risk
Authors: Tian Jianbo , Chen Can , Rao Meilin , Zhang Ming , Lu Zequn , Cai Yimin , Ying Pingting , Li Bin , Wang Haoxue , Wang Lu , Li Yao , Huang Jinyu , Fan Linyun , Cai Xiaomin , Ning Caibo , Li Yanmin , Zhang Fuwei , Wang Wenzhuo , Jiang Yuan , Liu Yizhuo , Wang Min , Li Heng , Huang Chaoqun , Yang Zhiyong , Chang Jiang , Zhu Ying , Yang Xiaojun , Miao Xiaoping
Published: April 2023

Supplementary Data from Aberrant RNA Splicing Is a Primary Link between Genetic Variation and Pancreatic Cancer Risk
Supplementary Table from Concurrent Activation of Kras and Canonical Wnt Signaling Induces Premalignant Lesions That Progress to Extrahepatic Biliary Cancer in Mice
Authors: Nagao Munemasa , Fukuda Akihisa , Omatsu Mayuki , Namikawa Mio , Sono Makoto , Fukunaga Yuichi , Masuda Tomonori , Araki Osamu , Yoshikawa Takaaki , Ogawa Satoshi , Masuo Kenji , Goto Norihiro , Hiramatsu Yukiko , Muta Yu , Tsuda Motoyuki , Maruno Takahisa , Nakanishi Yuki , Taketo Makoto Mark , Ferrer Jorge , Tsuruyama Tatsuaki , Nakanuma Yasuni , Taura Kojiro , Uemoto Shinji , Seno Hiroshi
Published: April 2023

Supplementary Table from Concurrent Activation of Kras and Canonical Wnt Signaling Induces Premalignant Lesions That Progress to Extrahepatic Biliary Cancer in Mice
Supplementary Data from Concurrent Activation of Kras and Canonical Wnt Signaling Induces Premalignant Lesions That Progress to Extrahepatic Biliary Cancer in Mice
Authors: Nagao Munemasa , Fukuda Akihisa , Omatsu Mayuki , Namikawa Mio , Sono Makoto , Fukunaga Yuichi , Masuda Tomonori , Araki Osamu , Yoshikawa Takaaki , Ogawa Satoshi , Masuo Kenji , Goto Norihiro , Hiramatsu Yukiko , Muta Yu , Tsuda Motoyuki , Maruno Takahisa , Nakanishi Yuki , Taketo Makoto Mark , Ferrer Jorge , Tsuruyama Tatsuaki , Nakanuma Yasuni , Taura Kojiro , Uemoto Shinji , Seno Hiroshi
Published: April 2023

Supplementary Data from Concurrent Activation of Kras and Canonical Wnt Signaling Induces Premalignant Lesions That Progress to Extrahepatic Biliary Cancer in Mice
Supplementary Data from Mapping the Immune Landscape in Metastatic Melanoma Reveals Localized Cell–Cell Interactions That Predict Immunotherapy Response
Authors: Antoranz Asier , Van Herck Yannick , Bolognesi Maddalena M. , Lynch Seodhna M. , Rahman Arman , Gallagher William M. , Boecxstaens Veerle , Marine Jean-Christophe , Cattoretti Giorgio , van den Oord Joost J. , De Smet Frederik , Bechter Oliver , Bosisio Francesca M.
Published: April 2023

Supplementary Data from Mapping the Immune Landscape in Metastatic Melanoma Reveals Localized Cell–Cell Interactions That Predict Immunotherapy Response
Supplementary Data from Targeting BCAT1 Combined with α-Ketoglutarate Triggers Metabolic Synthetic Lethality in Glioblastoma
Authors: Zhang Bo , Peng Hui , Zhou Mi , Bao Lei , Wang Chenliang , Cai Feng , Zhang Hongxia , Wang Jennifer E. , Niu Yanling , Chen Yan , Wang Yijie , Hatanpaa Kimmo J. , Copland John A. , DeBerardinis Ralph J. , Wang Yingfei , Luo Weibo
Published: April 2023

Supplementary Data from Targeting BCAT1 Combined with α-Ketoglutarate Triggers Metabolic Synthetic Lethality in Glioblastoma
Supplementary Data from Sustained Oncogenic Signaling in the Cytostatic State Enables Targeting of Nonproliferating Persistent Cancer Cells
Authors: Kim Lisa M. , Kim Paul Y. , Gebreyohannes Yemarshet K. , Leung Cheuk T.
Published: April 2023

Supplementary Data from Sustained Oncogenic Signaling in the Cytostatic State Enables Targeting of Nonproliferating Persistent Cancer Cells
Supplementary Figure from Squalene Epoxidase Metabolic Dependency Is a Targetable Vulnerability in Castration-Resistant Prostate Cancer
Authors: Shangguan Xun , Ma Zehua , Yu Minghao , Ding Jie , Xue Wei , Qi Jun
Published: April 2023

Supplementary Figure from Squalene Epoxidase Metabolic Dependency Is a Targetable Vulnerability in Castration-Resistant Prostate Cancer
Supplementary Data from A First-in-Class Inhibitor of ER Coregulator PELP1 Targets ER+ Breast Cancer
Authors: Altwegg Kristin A. , Viswanadhapalli Suryavathi , Mann Monica , Chakravarty Dimple , Krishnan Samaya , Liu Zexuan , Liu Junhao , Pratap Uday P. , Ebrahimi Behnam , Sanchez John R. , Li Xiaonan , Ma Shihong , Park Ben H. , Santhamma Bindu , Chen Yidong , Lai Zhao , Raj Ganesh V. , Yuan Yaxia , Zhou Daohong , Sareddy Gangadhara R. , Tekmal Rajeshwar R. , McHardy Stan , Huang Tim H.-M. , Rao Manjeet K. , Vankayalapati Hariprasad , Vadlamudi Ratna K.
Published: April 2023

Supplementary Data from A First-in-Class Inhibitor of ER Coregulator PELP1 Targets ER+ Breast Cancer
Supplementary Data from Imaging Glioblastoma Response to Radiotherapy Using 2H Magnetic Resonance Spectroscopy Measurements of Fumarate Metabolism
Authors: Hesse Friederike , Wright Alan J. , Somai Vencel , Bulat Flaviu , Kreis Felix , Brindle Kevin M.
Published: April 2023

Supplementary Data from Imaging Glioblastoma Response to Radiotherapy Using 2H Magnetic Resonance Spectroscopy Measurements of Fumarate Metabolism
Supplementary Data from A Distinct Chromatin State Drives Therapeutic Resistance in Invasive Lobular Breast Cancer
Authors: Nardone Agostina , Qiu Xintao , Spisak Sandor , Nagy Zsuzsanna , Feiglin Ariel , Feit Avery , Cohen Feit Gabriela , Xie Yingtian , Font-Tello Alba , Guarducci Cristina , Hermida-Prado Francisco , Syamala Sudeepa , Lim Klothilda , Munoz Gomez Miguel , Pun Matthew , Cornwell MacIntosh , Liu Weihan , Ors Aysegul , Mohammed Hisham , Cejas Paloma , Brock Jane B. , Freedman Matthew L. , Winer Eric P. , Fu Xiaoyong , Schiff Rachel , Long Henry W. , Metzger Filho Otto , Jeselsohn Rinath
Published: April 2023

Supplementary Data from A Distinct Chromatin State Drives Therapeutic Resistance in Invasive Lobular Breast Cancer
Supplementary Data from MAB21L4 Deficiency Drives Squamous Cell Carcinoma via Activation of RET
Authors: Srivastava Ankit , Tommasi Cristina , Sessions Dane , Mah Angela , Bencomo Tomas , Garcia Jasmine M. , Jiang Tiffany , Lee Michael , Shen Joseph Y. , Seow Lek Wei , Nguyen Audrey , Rajapakshe Kimal , Coarfa Cristian , Tsai Kenneth Y. , Lopez-Pajares Vanessa , Lee Carolyn S.
Published: April 2023

Supplementary Data from MAB21L4 Deficiency Drives Squamous Cell Carcinoma via Activation of RET
Table S5 from The RNA m6A Reader YTHDF1 Is Required for Acute Myeloid Leukemia Progression
Authors: Hong Yun-Guang , Yang Zhigang , Chen Yan , Liu Tian , Zheng Yuyuan , Zhou Chun , Wu Guo-Cai , Chen Yinhui , Xia Juan , Wen Ruiting , Liu Wenxin , Zhao Yi , Chen Jin , Gao Xiangwei , Chen Zhanghui
Published: April 2023

Table S5
Table S4 from The RNA m6A Reader YTHDF1 Is Required for Acute Myeloid Leukemia Progression
Authors: Hong Yun-Guang , Yang Zhigang , Chen Yan , Liu Tian , Zheng Yuyuan , Zhou Chun , Wu Guo-Cai , Chen Yinhui , Xia Juan , Wen Ruiting , Liu Wenxin , Zhao Yi , Chen Jin , Gao Xiangwei , Chen Zhanghui
Published: April 2023

Table S4
Table S1 from The RNA m6A Reader YTHDF1 Is Required for Acute Myeloid Leukemia Progression
Authors: Hong Yun-Guang , Yang Zhigang , Chen Yan , Liu Tian , Zheng Yuyuan , Zhou Chun , Wu Guo-Cai , Chen Yinhui , Xia Juan , Wen Ruiting , Liu Wenxin , Zhao Yi , Chen Jin , Gao Xiangwei , Chen Zhanghui
Published: April 2023

Table S1
Supplementary Figure from Lipid-Associated Macrophages Are Induced by Cancer-Associated Fibroblasts and Mediate Immune Suppression in Breast Cancer
Authors: Timperi Eleonora , Gueguen Paul , Molgora Martina , Magagna Ilaria , Kieffer Yann , Lopez-Lastra Silvia , Sirven Philemon , Baudrin Laura G. , Baulande Sylvain , Nicolas André , Champenois Gabriel , Meseure Didier , Vincent-Salomon Anne , Tardivon Anne , Laas Enora , Soumelis Vassili , Colonna Marco , Mechta-Grigoriou Fatima , Amigorena Sebastian , Romano Emanuela
Published: April 2023

Supplementary Figure from Lipid-Associated Macrophages Are Induced by Cancer-Associated Fibroblasts and Mediate Immune Suppression in Breast Cancer
Supplementary Figures from JAK–STAT Signaling in Inflammatory Breast Cancer Enables Chemotherapy-Resistant Cell States
Authors: Stevens Laura E. , Peluffo Guillermo , Qiu Xintao , Temko Daniel , Fassl Anne , Li Zheqi , Trinh Anne , Seehawer Marco , Jovanović Bojana , Alečković Maša , Wilde Callahan M. , Geck Renee C. , Shu Shaokun , Kingston Natalie L. , Harper Nicholas W. , Almendro Vanessa , Pyke Alanna L. , Egri Shawn B. , Papanastasiou Malvina , Clement Kendell , Zhou Ningxuan , Walker Sarah , Salas Jacqueline , Park So Yeon , Frank David A. , Meissner Alexander , Jaffe Jacob D. , Sicinski Piotr , Toker Alex , Michor Franziska , Long Henry W. , Overmoyer Beth A. , Polyak Kornelia
Published: April 2023

Supplementary Figures
Supplementary Figure from VRK1 Is a Synthetic–Lethal Target in VRK2-Deficient Glioblastoma
Authors: Shields Julie A. , Meier Samuel R. , Bandi Madhavi , Mulkearns-Hubert Erin E. , Hajdari Nicole , Ferdinez Maria Dam , Engel Justin L. , Silver Daniel J. , Shen Binzhang , Zhang Wenhai , Hubert Christopher G. , Mitchell Kelly , Shakya Sajina , Zhao Shan-Chuan , Bejnood Alborz , Zhang Minjie , Tjin Tham Sjin Robert , Wilker Erik , Lathia Justin D. , Andersen Jannik N. , Chen Yingnan , Li Fang , Weber Barbara , Huang Alan , Emmanuel Natasha
Published: April 2023

Supplementary Figure from VRK1 Is a Synthetic–Lethal Target in VRK2-Deficient Glioblastoma
Supplementary Data from β-Catenin Up-Regulates the Expression of the Urokinase Plasminogen Activator in Human Colorectal Tumors
Authors: Hiendlmeyer Elke , Regus Susanne , Wassermann Stella , Hlubek Falk , Haynl Angela , Dimmler Arno , Koch Claudia , Knoll Claudia , van Beest Moniek , Reuning Ute , Brabletz Thomas , Kirchner Thomas , Jung Andreas
Published: April 2023

Materials and Methods, 6 Tables, and 1 Figure
Figure S5 page1 from Combination Therapies with CDK4/6 Inhibitors to Treat KRAS-Mutant Pancreatic Cancer
Authors: Goodwin Craig M. , Waters Andrew M. , Klomp Jennifer E. , Javaid Sehrish , Bryant Kirsten L. , Stalnecker Clint A. , Drizyte-Miller Kristina , Papke Bjoern , Yang Runying , Amparo Amber M. , Ozkan-Dagliyan Irem , Baldelli Elisa , Calvert Valerie , Pierobon Mariaelena , Sorrentino Jessica A. , Beelen Andrew P. , Bublitz Natalie , Lüthen Mareen , Wood Kris C. , Petricoin Emanuel F. , Sers Christine , McRee Autumn J. , Cox Adrienne D. , Der Channing J.
Published: April 2023

Figure S5 page1
Figure S4 page1 from Combination Therapies with CDK4/6 Inhibitors to Treat KRAS-Mutant Pancreatic Cancer
Authors: Goodwin Craig M. , Waters Andrew M. , Klomp Jennifer E. , Javaid Sehrish , Bryant Kirsten L. , Stalnecker Clint A. , Drizyte-Miller Kristina , Papke Bjoern , Yang Runying , Amparo Amber M. , Ozkan-Dagliyan Irem , Baldelli Elisa , Calvert Valerie , Pierobon Mariaelena , Sorrentino Jessica A. , Beelen Andrew P. , Bublitz Natalie , Lüthen Mareen , Wood Kris C. , Petricoin Emanuel F. , Sers Christine , McRee Autumn J. , Cox Adrienne D. , Der Channing J.
Published: April 2023

Figure S4 page1
Figure S3 page1 from Combination Therapies with CDK4/6 Inhibitors to Treat KRAS-Mutant Pancreatic Cancer
Authors: Goodwin Craig M. , Waters Andrew M. , Klomp Jennifer E. , Javaid Sehrish , Bryant Kirsten L. , Stalnecker Clint A. , Drizyte-Miller Kristina , Papke Bjoern , Yang Runying , Amparo Amber M. , Ozkan-Dagliyan Irem , Baldelli Elisa , Calvert Valerie , Pierobon Mariaelena , Sorrentino Jessica A. , Beelen Andrew P. , Bublitz Natalie , Lüthen Mareen , Wood Kris C. , Petricoin Emanuel F. , Sers Christine , McRee Autumn J. , Cox Adrienne D. , Der Channing J.
Published: April 2023

Figure S3 page1
Table S2, S4, S5, S6 and S7 from Single-Cell Analysis Reveals a CD4+ T-cell Cluster That Correlates with PD-1 Blockade Efficacy
Authors: Kagamu Hiroshi , Yamasaki Satoshi , Kitano Shigehisa , Yamaguchi Ou , Mouri Atsuto , Shiono Ayako , Nishihara Fuyumi , Miura Yu , Hashimoto Kosuke , Imai Hisao , Kaira Kyoichi , Kobayashi Kunihiko , Kanai Yae , Shibata Tatsuhiro , Horimoto Katsuhisa
Published: April 2023

Supplementary Table 2, 4, 5, 6, 7.
Data file S5 from Targeting STAT5 Signaling Overcomes Resistance to IDH Inhibitors in Acute Myeloid Leukemia through Suppression of Stemness
Authors: Liu Alex C.H. , Cathelin Severine , Yang Yitong , Dai David L. , Ayyathan Dhanoop Manikoth , Hosseini Mohsen , Minden Mark D. , Tierens Anne , Chan Steven M.
Published: April 2023

Characteristics of the primary AML samples
Supplementary Tables from MYC Overexpression Drives Immune Evasion in Hepatocellular Carcinoma That Is Reversible through Restoration of Proinflammatory Macrophages
Authors: Dhanasekaran Renumathy , Hansen Aida S. , Park Jangho , Lemaitre Lea , Lai Ian , Adeniji Nia , Kuruvilla Sibu , Suresh Akanksha , Zhang Josephine , Swamy Varsha , Felsher Dean W.
Published: April 2023

Supp Tables
Supplementary Table 3: Association of 77 body mass index (BMI) SNPs with endometrial cancer risk and BMI in the endometrial cancer dataset from Genetic Risk Score Mendelian Randomization Shows that Obesity Measured as Body Mass Index, but not Waist:Hip Ratio, Is Causal for Endometrial Cancer
Authors: Painter Jodie N. , O'Mara Tracy A. , Marquart Louise , Webb Penelope M. , Attia John , Medland Sarah E. , Cheng Timothy , Dennis Joe , Holliday Elizabeth G. , McEvoy Mark , Scott Rodney J. , Ahmed Shahana , Healey Catherine S. , Shah Mitul , Gorman Maggie , Martin Lynn , Hodgson Shirley V. , Beckmann Matthias W. , Ekici Arif B. , Fasching Peter A. , Hein Alexander , Rübner Matthias , Czene Kamila , Darabi Hatef , Hall Per , Li Jingmei , Dörk Thilo , Dürst Matthias , Hillemanns Peter , Runnebaum Ingo B. , Amant Frederic , Annibali Daniela , Depreeuw Jeroen , Lambrechts Diether , Neven Patrick , Cunningham Julie M. , Dowdy Sean C. , Goode Ellen L. , Fridley Brooke L. , Winham Stacey J. , Njølstad Tormund S. , Salvesen Helga B. , Trovik Jone , Werner Henrica M.J. , Ashton Katie A. , Otton Geoffrey , Proietto Anthony , Mints Miriam , Tham Emma , Bolla Manjeet K. , Michailidou Kyriaki , Wang Qin , Tyrer Jonathan P. , Hopper John L. , Peto Julian , Swerdlow Anthony J. , Burwinkel Barbara , Brenner Hermann , Meindl Alfons , Brauch Hiltrud , Lindblom Annika , Chang-Claude Jenny , Couch Fergus J. , Giles Graham G. , Kristensen Vessela N. , Cox Angela , Pharoah Paul D.P. , Tomlinson Ian , Dunning Alison M. , Easton Douglas F. , Thompson Deborah J. , Spurdle Amanda B.
Published: April 2023

Excel file detailing single BMI SNP associations with EC risk and BMI
Supplementary Table 1 from Reallocating Time to Sleep, Sedentary Time, or Physical Activity: Associations with Waist Circumference and Body Mass Index in Breast Cancer Survivors
Authors: Boyle Terry , Vallance Jeff K. , Buman Matthew P. , Lynch Brigid M.
Published: April 2023

Supplementary Table 1. Table 1. Associations between sleep, prolonged sedentary bouts, non-prolonged sedentary bouts, light-intensity physical activity (LPA) and moderate-to-vigorous physical activity (MVPA) with waist circumference and body mass index when reallocating 30 minutes of one activity to 30 minutes of another activity in a sample of breast cancer survivors, in participants with fewer than 21 hours of â€˜total time.
Supplementary Figure Legends from Dense and Nondense Mammographic Area and Risk of Breast Cancer by Age and Tumor Characteristics
Authors: Bertrand Kimberly A. , Scott Christopher G. , Tamimi Rulla M. , Jensen Matthew R. , Pankratz V. Shane , Norman Aaron D. , Visscher Daniel W. , Couch Fergus J. , Shepherd John , Chen Yunn-Yi , Fan Bo , Wu Fang-Fang , Ma Lin , Beck Andrew H. , Cummings Steven R. , Kerlikowske Karla , Vachon Celine M.
Published: April 2023

Supplementary Figure Legends from Dense and Nondense Mammographic Area and Risk of Breast Cancer by Age and Tumor Characteristics
Supplementary Table 3 from Factorial Validity and Invariance of Four Psychosocial Constructs of Colorectal Cancer Screening: Does Screening Experience Matter?
Authors: Murphy Caitlin C. , McQueen Amy , Bartholomew L. Kay , del Junco Deborah J. , Coan Sharon P. , Vernon Sally W.
Published: April 2023

PDF - 134KB, Covariance matrix for never screened subgroup (n=1,277).
Supplementary Tables 1 and 2 from Impact of Treatment Exposures on Cardiovascular Risk and Insulin Resistance in Childhood Cancer Survivors
Authors: Baker K. Scott , Chow Eric J. , Goodman Pamela J. , Leisenring Wendy M. , Dietz Andrew C. , Perkins Joanna L. , Chow Lisa , Sinaiko Alan , Moran Antoinette , Petryk Anna , Steinberger Julia
Published: April 2023

PDF - 55KB, Supplementary Table S1. Number (N) and percent (%) of therapeutic exposures used in the development of the tree model within each final treatment combination category. Supplementary Table S2: Cumulative dose categories of chemotherapy agents.
Associations between statin use and prostate cancer aggressiveness, overall and stratified by race and additionally adjusted for education, income and family history of prostate cancer. from Statin Use and Prostate Cancer Aggressiveness: Results from the Population-Based North Carolina–Louisiana Prostate Cancer Project
Authors: Allott Emma H. , Farnan Laura , Steck Susan E. , Arab Lenore , Su L. Joseph , Mishel Merle , Fontham Elizabeth T.H. , Mohler James L. , Bensen Jeannette T.
Published: April 2023

Logistic regression analysis of associations between statin use and prostate cancer aggressiveness, additionally adjusted for education, income and family history of prostate cancer.
Supplementary Table 1 from Mammographic Screening and Breast Cancer Mortality: A Case–Control Study and Meta-analysis
Authors: Nickson Carolyn , Mason Kate E. , English Dallas R. , Kavanagh Anne M.
Published: April 2023

PDF file - 109K, Summary of reasons for exclusion for all papers that were shortlisted by one or both assessors based on titles and abstracts