bluuebunny/crossref_metadata_2025 huggingface dataset:
Table S2-S3 from A Large-Scale, Exome-Wide Association Study of Han Chinese Women Identifies Three Novel Loci Predisposing to Breast Cancer
Authors: Zhang Bo , Chen Men-Yun , Shen Yu-Jun , Zhuo Xian-Bo , Gao Ping , Zhou Fu-Sheng , Liang Bo , Zu Jun , Zhang Qin , Suleman Sufyan , Xu Yi-Hui , Xu Min-Gui , Xu Jin-Kai , Liu Chen-Cheng , Giannareas Nikolaos , Xia Ji-Han , Zhao Yuan , Huang Zhong-Lian , Yang Zhen , Cheng Huai-Dong , Li Na , Hong Yan-Yan , Li Wei , Zhang Min-Jun , Yu Ke-Da , Li Guoliang , Sun Meng-Hong , Chen Zhen-Dong , Wei Gong-Hong , Shao Zhi-Min
Published: March 2023

Table S2-S3 inlcude siRNAs and primers used in this study.
Supplementary Tables 1-10 from Adaptive and Reversible Resistance to Kras Inhibition in Pancreatic Cancer Cells
Authors: Chen Pan-Yu , Muzumdar Mandar Deepak , Dorans Kimberly Judith , Robbins Rebecca , Bhutkar Arjun , del Rosario Amanda , Mertins Philipp , Qiao Jana , Schafer Anette Claudia , Gertler Frank , Carr Steven , Jacks Tyler
Published: March 2023

Detailed information on shRNA and primer sequences, tumor initiating frequency of Kras-inhibited cells, RNA-Seq data, and phosphoproteomic data.
Figures S1 to S7 from Nkx2-2as Suppression Contributes to the Pathogenesis of Sonic Hedgehog Medulloblastoma
Authors: Zhang Yimeng , Wang Ting , Wang Shan , Xiong Yanlu , Zhang Rui , Zhang Xiang , Zhao Jing , Yang An-Gang , Wang Lei , Jia Lintao
Published: March 2023

This file contains supplementary figures showing the survival times of medulloblastoma (MB) model mice used throughout the present study (Fig. S1), a heatmap of differentially expressed genes between CGNPs and MB cells (Fig. S2), the capability of Nkx2-2as to suppress the stem-like properties of MB cells (Fig. S3), bioinformatics prediction of miRNAs potentially bound to Nkx2-2as (Fig. S4) and the candidate targets of these miRNAs (Fig. S5), a ChIP proof for the inability of Gli2 to occupy the Nkx2-2as promoter (Fig. S6), and finally the typical GAB1 staining results to distinguish Shh subtype clinical MBs (Fig. S7).
Supplementary Table S1 from LSR Antibody Therapy Inhibits Ovarian Epithelial Tumor Growth by Inhibiting Lipid Uptake
Authors: Hiramatsu Kosuke , Serada Satoshi , Enomoto Takayuki , Takahashi Yusuke , Nakagawa Satoshi , Nojima Satoshi , Morimoto Akiko , Matsuzaki Shinya , Yokoyama Takuhei , Takahashi Tsuyoshi , Fujimoto Minoru , Takemori Hiroshi , Ueda Yutaka , Yoshino Kiyoshi , Morii Eiichi , Kimura Tadashi , Naka Tetsuji
Published: March 2023

This table shows the list of all the proteins identified by iTRAQ analysis including LSR.
Table S4 from microRNA-1246 Is an Exosomal Biomarker for Aggressive Prostate Cancer
Authors: Bhagirath Divya , Yang Thao Ly , Bucay Nathan , Sekhon Kirandeep , Majid Shahana , Shahryari Varahram , Dahiya Rajvir , Tanaka Yuichiro , Saini Sharanjot
Published: March 2023

Clinicopathologic characteristics of prostate cancer patients
Table S3 from microRNA-1246 Is an Exosomal Biomarker for Aggressive Prostate Cancer
Authors: Bhagirath Divya , Yang Thao Ly , Bucay Nathan , Sekhon Kirandeep , Majid Shahana , Shahryari Varahram , Dahiya Rajvir , Tanaka Yuichiro , Saini Sharanjot
Published: March 2023

Dysregulated pathways in aggressive prostate cancer as compared to BPH
Supplementary Table S1 from ER Stress Signaling Promotes the Survival of Cancer “Persister Cells” Tolerant to EGFR Tyrosine Kinase Inhibitors
Authors: Terai Hideki , Kitajima Shunsuke , Potter Danielle S. , Matsui Yusuke , Quiceno Laura Gutierrez , Chen Ting , Kim Tae-jung , Rusan Maria , Thai Tran C. , Piccioni Federica , Donovan Katherine A. , Kwiatkowski Nicholas , Hinohara Kunihiko , Wei Guo , Gray Nathanael S. , Fischer Eric S. , Wong Kwok-Kin , Shimamura Teppei , Letai Anthony , Hammerman Peter S. , Barbie David A.
Published: March 2023

Sequence of qPCR primers and sgRNAs
Figure S3 from IRAK1 Augments Cancer Stemness and Drug Resistance via the AP-1/AKR1B10 Signaling Cascade in Hepatocellular Carcinoma
Authors: Cheng Bowie Y. , Lau Eunice Y. , Leung Hoi-Wing , Leung Carmen Oi-Ning , Ho Nicole P. , Gurung Shilpa , Cheng Lily K. , Lin Chi Ho , Lo Regina Cheuk-Lam , Ma Stephanie , Ng Irene Oi-Lin , Lee Terence K.
Published: March 2023

Oncomine analysis shows IRAK1 overexpression in cancers of breast, bladder, brain, colon, lung and ovary
Supplemental Fig 1 from Aberrant Phosphorylation of SMAD4 Thr277-Mediated USP9x–SMAD4 Interaction by Free Fatty Acids Promotes Breast Cancer Metastasis
Authors: Wu Yong , Yu Xiaoting , Yi Xianghua , Wu Ke , Dwabe Sami , Atefi Mohammad , Elshimali Yahya , Kemp Kevin T. , Bhat Kruttika , Haro Jesse , Sarkissyan Marianna , Vadgama Jaydutt V.
Published: March 2023

Figure S1 Quantification of Western blot analysis (related to Figure 1) (A-H). Data are presented as mean fold increases ({plus minus}SD) in treated groups over basal values from three independent experiments. *p < 0.01 versus controls; #p < 0.01 versus their corresponding DMSO controls. FFA facilitates TGF-beta-induced ERK activation and SAMD4 nuclear retention, Related to Figure 1. I, Nuclear extracts were made from MDA-MB-231 cells that were treated with 3 ng/ml of TGF-beta for the time points shown. They were analyzed by Western blotting with antibodies against Smad4 or phosphor-ERK and ERK. H3 was used as a loading control for nuclear fractions. We evaluated the cytoplasmic contamination of the nuclear fractions by blotting for α-vinculin. J, Nuclear extracts were made from MDA-MB-231 cells treated with 3 ng/ml of TGF-beta in the presence of palmitate (PA, 400 microM) for the time points shown. Phosphor-ERK and ERK and nuclear SMAD4 were analyzed by Western blotting.
Supplementary Figures 1-7 and Supplementary Methods from PHD3 Controls Lung Cancer Metastasis and Resistance to EGFR Inhibitors through TGFα
Authors: Dopeso Higinio , Jiao Hui-Ke , Cuesta Angel M. , Henze Anne-Theres , Jurida Liane , Kracht Michael , Acker-Palmer Amparo , Garvalov Boyan K. , Acker Till
Published: March 2023

Supplementary Figure S1. Epithelial-mesenchymal transition and PHD3 silencing | Supplementary Figure S2. PHD3 silencing promotes EMT through upregulation of TGFα. | Supplementary Figure S3. EGFR signaling and TGFα mediate the effects of PHD3 silencing on EMT. | Supplementary Figure S4. EMT induced by PHD3 depletion is HIF dependent. | Supplementary Figure S5. PHD3 silencing confers resistance to erlotinib in EGFR mutant lung cancer cells. | Supplementary Figure S6. TGFα activates EGFR signaling in the presence of erlotinib. | Supplementary Figure S7. Resistance to erlotinib is associated with decreased PHD3 expression. | Supplementary Materials and Methods
Table S1 from Antitumor Effects of Blocking Protein Neddylation in T315I-BCR-ABL Leukemia Cells and Leukemia Stem Cells
Authors: Liu Chang , Nie Danian , Li Juan , Du Xin , Lu Yuhong , Li Yangqiu , Zhou Jingfeng , Jin Yanli , Pan Jingxuan
Published: March 2023

Table S1 shows information of antibodies for Western blotting analysis.
Figure S1-S4 from Antitumor Effects of Blocking Protein Neddylation in T315I-BCR-ABL Leukemia Cells and Leukemia Stem Cells
Authors: Liu Chang , Nie Danian , Li Juan , Du Xin , Lu Yuhong , Li Yangqiu , Zhou Jingfeng , Jin Yanli , Pan Jingxuan
Published: March 2023

Figure S1 - p53-Null K562 and KCL-22 cells were resistance to MLN4924; Figure S2 - MLN4924 induces apoptosis in IM-sensitive and -resistant CML cells harboring WT-p53 in a time-dependent fashion; Figure S3 - MLN4924 suppresses survival of BCR-ABL+ CML LSCs in vivo; Figure S4 - p27kip1 knockdown attenuates the effect of MLN4924 on CML LSCs in vivo.
Supplemental Movie from Defining Cancer Subpopulations by Adaptive Strategies Rather Than Molecular Properties Provides Novel Insights into Intratumoral Evolution
Authors: Ibrahim-Hashim Arig , Robertson-Tessi Mark , Enriquez-Navas Pedro M. , Damaghi Mehdi , Balagurunathan Yoganand , Wojtkowiak Jonathan W. , Russell Shonagh , Yoonseok Kam , Lloyd Mark C. , Bui Marilyn M. , Brown Joel S. , Anderson Alexander R.A. , Gillies Robert J. , Gatenby Robert A.
Published: March 2023

Simultaneous video of four simulations of tumor growth with accompanying phenotypic "flow" diagram, Top left: untreated; top right: low dose, early; bottom left: high dose, late; bottom right: low dose, late. The appearance of the white box in each of the treated windows indicates when the buffer treatment was applied (all vessels secrete buffer). In the phenotype flow plot, the cyan dot shows the median phenotype of all tumor cells, black points indicate distribution of phenotypes present in the tumor at each time point. The simulations show that the buffer therapy reverses the evolution towards the glycolytic, acid-resistant phenotype, with early or high dose having the stronger effect. A late, low dose does have an effect on the progression, but the invasive phenotype persists despite the therapy and will eventually dominate.
Supplementary Figure S5 from Fibrinolytic Enzyme Cotherapy Improves Tumor Perfusion and Therapeutic Efficacy of Anticancer Nanomedicine
Authors: Kirtane Ameya R. , Sadhukha Tanmoy , Kim Hyunjoon , Khanna Vidhi , Koniar Brenda , Panyam Jayanth
Published: March 2023

Effect of administration of tPA on plasma D-dimer levels of healthy and tumor bearing mice.
Quantitative comparison of IHC staining from An Image Analysis Resource for Cancer Research: PIIP—Pathology Image Informatics Platform for Visualization, Analysis, and Management
Authors: Martel Anne L. , Hosseinzadeh Dan , Senaras Caglar , Zhou Yu , Yazdanpanah Azadeh , Shojaii Rushin , Patterson Emily S. , Madabhushi Anant , Gurcan Metin N.
Published: March 2023

Description of a use case to illistrate workflow with Sedeen Viewer
Figure S2. from PADI2-Mediated Citrullination Promotes Prostate Cancer Progression
Authors: Wang Lin , Song Guanhua , Zhang Xiang , Feng Tingting , Pan Jihong , Chen Weiwen , Yang Muyi , Bai Xinnuo , Pang Yu , Yu Jindan , Han Jinxiang , Han Bo
Published: March 2023

PADI2 makes no significant effect on the mRNA expression level of AR, but stabilizes AR protein, facilitates its nuclear translocation and activity. PADI2 stabilizes AR at protein, but not mRNA level, and facilitates AR nuclear translocation and activity.
Supplementary Information from Blockade of Myeloid-Derived Suppressor Cell Expansion with All-Trans Retinoic Acid Increases the Efficacy of Antiangiogenic Therapy
Authors: Bauer Raimund , Udonta Florian , Wroblewski Mark , Ben-Batalla Isabel , Santos Ines Miranda , Taverna Federico , Kuhlencord Meike , Gensch Victoria , Päsler Sarina , Vinckier Stefan , Brandner Johanna M. , Pantel Klaus , Bokemeyer Carsten , Vogl Thomas , Roth Johannes , Carmeliet Peter , Loges Sonja
Published: March 2023

The file Supplementary Information contains 9 Supplementary Figures and additional Materials and Methods mainly related to experiments done during the process of the Revision. Here is a short description of each Supplementary Figure: Supplementary Figure S1. Reduction of the DC101 dosage to 10 mg/kg results in a significant, additive treatment effect in the TS/A model when combined with ATRA. Supplementary Figure S2. Growth curves showing tumor kinetics up to 9 days after stopping the treatment with DC101 and ATRA. Supplementary Figure S3. ATRA decreases the DC101-induced expression of the alternative hypoxia marker GLUT1, whereas CD8+ T-cell and NK cell populations in TS/A breast cancer tumors remain unchanged upon treatment. Supplementary Figure S4. Characterization of the proangiogenic phenotype of tumor-infiltrating MDSC. Supplementary Figure S5. Characterization of the matricellular composition in 4T1 tumors. Supplementary Figure S6. In vitro generated MDSC efficiently suppress T cell proliferation. Supplementary Figure S7. (A) Intratumoral S100A8 levels show a strong correlation with FITC-lectin leakage. (B) ATRA has no direct influence on ZO-1 protein levels in vitro. Supplementary Figure S8. The therapeutic efficiency of DC101 is not increased in S100A9 knockout bone marrow transplanted mice, which exhibit tumor-dependent S100A8 recovery. Supplementary Figure S9. Analysis of the Vegf and Fgf expression levels of mast cells and cancer associated fibroblasts in 4T1 tumors. The Supplementary Materials and Methods section contains a description of: used Reagents and proteins, quantitative PCR, sequences of oligonucleotide primers used for quantitative PCR, fluorescence activated cell sorting (FACS) of mast cells and cancer assoicated fibroblasts, bone marrow transplantation, scanning electron microscopy, western blotting, ELISA, allogeneic T cell proliferation assay, metabolomic analysis of 4T1 tumor tissue.
Supplementary Figure 5 from MVisAGe Identifies Concordant and Discordant Genomic Alterations of Driver Genes in Squamous Tumors
Authors: Walter Vonn , Du Ying , Danilova Ludmila , Hayward Michele C. , Hayes D. Neil
Published: March 2023

Comparison of measures of statistical significance using the t-based and permutation-based methods.
Supplemental material from dcmqi: An Open Source Library for Standardized Communication of Quantitative Image Analysis Results Using DICOM
Authors: Herz Christian , Fillion-Robin Jean-Christophe , Onken Michael , Riesmeier Jörg , Lasso Andras , Pinter Csaba , Fichtinger Gabor , Pieper Steve , Clunie David , Kikinis Ron , Fedorov Andriy
Published: March 2023

Background and details about the functionality of the software that could not be included in the main manuscript due to the size constraints.
Figure S1 from LesionTracker: Extensible Open-Source Zero-Footprint Web Viewer for Cancer Imaging Research and Clinical Trials
Authors: Urban Trinity , Ziegler Erik , Lewis Rob , Hafey Chris , Sadow Cheryl , Van den Abbeele Annick D. , Harris Gordon J.
Published: March 2023

Supplementary Figure 1 demonstrates lesion labeling for image assessment in LesionTracker
Table S1 from Expression of Adipocyte/Macrophage Fatty Acid–Binding Protein in Tumor-Associated Macrophages Promotes Breast Cancer Progression
Authors: Hao Jiaqing , Yan Fei , Zhang Yuwen , Triplett Ashley , Zhang Ying , Schultz Debra A. , Sun Yanwen , Zeng Jun , Silverstein Kevin A.T. , Zheng Qi , Bernlohr David A. , Cleary Margot P. , Egilmez Nejat K. , Sauter Edward , Liu Shujun , Suttles Jill , Li Bing
Published: March 2023

Table S1 shows the sequences of PCR primers, siRNAs and miRs used in experiments.
Figure S5 from Discovery of Human-Similar Gene Fusions in Canine Cancers
Authors: Ulvé Ronan , Rault Mélanie , Bahin Mathieu , Lagoutte Laetitia , Abadie Jérôme , De Brito Clotilde , Coindre Jean-Michel , Botherel Nadine , Rousseau Audrey , Wucher Valentin , Cadieu Edouard , Thieblemont Catherine , Hitte Christophe , Cornevin Laurence , Cabillic Florian , Bachelot Laura , Gilot David , Hennuy Benoit , Guillaudeux Thierry , Le Goff Arnaud , Derrien Thomas , Hédan Benoît , André Catherine
Published: March 2023

Characterization of the canine DLBCL.
Supplemental Table 1 from MYD88 L265P Mutation in Lymphoid Malignancies
Authors: Yu Xinfang , Li Wei , Deng Qipan , Li Ling , Hsi Eric D. , Young Ken H. , Zhang Mingzhi , Li Yong
Published: March 2023

Supplemental Table 1 shows detailed MYD88 L265P mutation frequency in B cell neoplasms. Data are summarized from all publications in PUBMED containing "MYD88 L265P".
Supplementary Table 1 from Temozolomide Treatment Induces lncRNA MALAT1 in an NF-κB and p53 Codependent Manner in Glioblastoma
Authors: Voce David J. , Bernal Giovanna M. , Wu Longtao , Crawley Clayton D. , Zhang Wei , Mansour Nassir M. , Cahill Kirk E. , Szymura Szymon J. , Uppal Abhineet , Raleigh David R. , Spretz Ruben , Nunez Luis , Larsen Gustavo , Khodarev Nikolai N. , Weichselbaum Ralph R. , Yamini Bakhtiar
Published: March 2023

Clinical characteristics of patients included in TMA
Supplementary Movie S3. from Actin Cytoskeleton Remodeling Drives Breast Cancer Cell Escape from Natural Killer–Mediated Cytotoxicity
Authors: Al Absi Antoun , Wurzer Hannah , Guerin Coralie , Hoffmann Celine , Moreau Flora , Mao Xianqing , Brown-Clay Joshua , Petrolli Rémi , Casellas Carla Pou , Dieterle Monika , Thiery Jean-Paul , Chouaib Salem , Berchem Guy , Janji Bassam , Thomas Clément
Published: March 2023

Time lapse imaging movie showing typical actin cytoskeleton configurations and dynamics in MDA-MB-231 cells upon NK cell attack. Individual Z stacks were taken every minute over a period of 2 hours. Time lapse movies were assembled from the Z stacks in NIH ImageJ and played at a fast frame rate (5 frames per second). NK cells are stained in red (PKH26) whereas the LifeAct-mEGFP-expressing tumour cell appears in green.
Supplementary Movie S1. from Actin Cytoskeleton Remodeling Drives Breast Cancer Cell Escape from Natural Killer–Mediated Cytotoxicity
Authors: Al Absi Antoun , Wurzer Hannah , Guerin Coralie , Hoffmann Celine , Moreau Flora , Mao Xianqing , Brown-Clay Joshua , Petrolli Rémi , Casellas Carla Pou , Dieterle Monika , Thiery Jean-Paul , Chouaib Salem , Berchem Guy , Janji Bassam , Thomas Clément
Published: March 2023

Typical actin cytoskeleton organization observed in most NK cell-conjugated MDA-MB-231 cells. The cell conjugate was acquired on a LSM880 laser scanning confocal microscope (Carl Zeiss) with Airyscan in the high-resolution mode, and the 3D projection was assembled and animated using Zeiss Zen Software. Then NK cell was stained in red (PKH26) whereas the LifeAct-mEGFP-expressing tumour cell appears in green.
Table S1 from Tau Mutations Serve as a Novel Risk Factor for Cancer
Authors: Rossi Giacomina , Redaelli Veronica , Contiero Paolo , Fabiano Sabrina , Tagliabue Giovanna , Perego Paola , Benussi Luisa , Bruni Amalia C. , Filippini Graziella , Farinotti Mariangela , Giaccone Giorgio , Buiatiotis Simona , Manzoni Claudia , Ferrari Raffaele , Tagliavini Fabrizio
Published: March 2023

Table S1 shows the chromosome aberrations in skin fibroblasts from the patient carrying the MAPT V363A mutation
Figure S1 from Hypoxic Tumor-Derived Exosomal miR-301a Mediates M2 Macrophage Polarization via PTEN/PI3Kγ to Promote Pancreatic Cancer Metastasis
Authors: Wang Xiaofeng , Luo Guangtao , Zhang Kundong , Cao Jun , Huang Chen , Jiang Tao , Liu Bingya , Su Liping , Qiu Zhengjun
Published: March 2023

Figure S1 shows (A) The levels of HIF-1α and HIF-2α transcripts treated with their respective siRNAs. (B) miR-301a levels in PANC-1 cells transfected with HIF siRNA. (C) The levels of HIF-1α in PANC-1 cells transfected with miR-301a minics or sgRNA.
Supplementary Tables 1-3 from Elevation of Stromal-Derived Mediators of Inflammation Promote Prostate Cancer Progression in African-American Men
Authors: Gillard Marc , Javier Rodrigo , Ji Yuan , Zheng S. Lilly , Xu Jianfeng , Brendler Charles B. , Crawford Susan E. , Pierce Brandon L. , Griend Donald J. Vander , Franco Omar E.
Published: March 2023

Clinico-pathological characteristics of PCa patiens selected for IHC and isolation of CAF. DEG genes between PrF-AA and PrF-EA
Table S1 from IDO Immune Status after Chemoradiation May Predict Survival in Lung Cancer Patients
Authors: Wang Weili , Huang Lei , Jin Jian-Yue , Jolly Shruti , Zang Yong , Wu Huanmei , Yan Li , Pi Wenhu , Li Lang , Mellor Andrew L. , Kong Feng-Ming (Spring)
Published: March 2023

Detail of Prospective Clinical Trials.
Supplemental Table 1 from Aberrant FGFR Tyrosine Kinase Signaling Enhances the Warburg Effect by Reprogramming LDH Isoform Expression and Activity in Prostate Cancer
Authors: Liu Junchen , Chen Guo , Liu Zezhen , Liu Shaoyou , Cai Zhiduan , You Pan , Ke Yuepeng , Lai Li , Huang Yun , Gao Hongchang , Zhao Liangcai , Pelicano Helene , Huang Peng , McKeehan Wallace L. , Wu Chin-Lee , Wang Cong , Zhong Weide , Wang Fen
Published: March 2023

Primer sequences
Figure S1 from The miR-371∼373 Cluster Represses Colon Cancer Initiation and Metastatic Colonization by Inhibiting the TGFBR2/ID1 Signaling Axis
Authors: Ullmann Pit , Rodriguez Fabien , Schmitz Martine , Meurer Steffen K. , Qureshi-Baig Komal , Felten Paul , Ginolhac Aurélien , Antunes Laurent , Frasquilho Sonia , Zügel Nikolaus , Weiskirchen Ralf , Haan Serge , Letellier Elisabeth
Published: March 2023

Additional colony formation assays and size measurement of 2D colonies and 3D spheroids
Figure S3 from NFATc1 Promotes Antitumoral Effector Functions and Memory CD8+ T-cell Differentiation during Non–Small Cell Lung Cancer Development
Authors: Heim Lisanne , Friedrich Juliane , Engelhardt Marina , Trufa Denis I. , Geppert Carol I. , Rieker Ralf J. , Sirbu Horia , Finotto Susetta
Published: March 2023

Supplementary Figure 3: Representative dot plots of NFATc1 levels in T cells of lung tumor-bearing B6 WT mice in vivo treated and in vitro re-challenged with Î±PD-1antibodies.
Figure S2 from Metabolic and Physiologic Imaging Biomarkers of the Tumor Microenvironment Predict Treatment Outcome with Radiation or a Hypoxia-Activated Prodrug in Mice
Authors: Matsumoto Shingo , Kishimoto Shun , Saito Keita , Takakusagi Yoichi , Munasinghe Jeeva P. , Devasahayam Nallathamby , Hart Charles P. , Gillies Robert J. , Mitchell James B. , Krishna Murali C.
Published: March 2023

Immunostaining of hypoxia marker pimonidazole of three pancreatic tumors. Representative pictures of whole tumor area were shown.
FigureS6 from Inhibition of Nr4a Receptors Enhances Antitumor Immunity by Breaking Treg-Mediated Immune Tolerance
Authors: Hibino Sana , Chikuma Shunsuke , Kondo Taisuke , Ito Minako , Nakatsukasa Hiroko , Omata-Mise Setsuko , Yoshimura Akihiko
Published: March 2023

Camptothecin and a COX-2 inhibitor induced anti-tumor effects in a MC38 tumor model
Figure S2 from CDKN2A/p16 Deletion in Head and Neck Cancer Cells Is Associated with CDK2 Activation, Replication Stress, and Vulnerability to CHK1 Inhibition
Authors: Gadhikar Mayur A. , Zhang Jiexin , Shen Li , Rao Xiayu , Wang Jing , Zhao Mei , Kalu Nene N. , Johnson Faye M. , Byers Lauren A. , Heymach John , Hittelman Walter N. , Udayakumar Durga , Pandita Raj K. , Pandita Tej K. , Pickering Curtis R. , Redwood Abena B. , Piwnica-Worms Helen , Schlacher Katharina , Frederick Mitchell J. , Myers Jeffrey N.
Published: March 2023

This file contains data showing perturbations in the S phase progression of UMSCC1 cells following prexasertib treatment. This file is linked to main figure 2.
Supplementary Table 4 from SETD2 Is Recurrently Mutated in Whole-Exome Sequenced Canine Osteosarcoma
Authors: Sakthikumar Sharadha , Elvers Ingegerd , Kim Jaegil , Arendt Maja L. , Thomas Rachael , Turner-Maier Jason , Swofford Ross , Johnson Jeremy , Schumacher Steven E. , Alföldi Jessica , Axelsson Erik , Couto C. Guillermo , Kisseberth William C. , Pettersson Mats E. , Getz Gad , Meadows Jennifer R.S. , Modiano Jaime F. , Breen Matthew , Kierczak Marcin , Forsberg-Nilsson Karin , Marinescu Voichita D. , Lindblad-Toh Kerstin
Published: March 2023

File contains genes that have focal somatic copy number amplifications
Table S1, S2, and S3 from Oncogenic Kinase–Induced PKM2 Tyrosine 105 Phosphorylation Converts Nononcogenic PKM2 to a Tumor Promoter and Induces Cancer Stem–like Cells
Authors: Zhou Zhifen , Li Min , Zhang Lin , Zhao Hong , Şahin Özgür , Chen Jing , Zhao Jean J. , Songyang Zhou , Yu Dihua
Published: March 2023

Tyrosine kinases in the array, altered tyrosine kinases in cancer types and cellular glycolytic index of MCF10A sublines
Supplementary Table 14 from SETD2 Is Recurrently Mutated in Whole-Exome Sequenced Canine Osteosarcoma
Authors: Sakthikumar Sharadha , Elvers Ingegerd , Kim Jaegil , Arendt Maja L. , Thomas Rachael , Turner-Maier Jason , Swofford Ross , Johnson Jeremy , Schumacher Steven E. , Alföldi Jessica , Axelsson Erik , Couto C. Guillermo , Kisseberth William C. , Pettersson Mats E. , Getz Gad , Meadows Jennifer R.S. , Modiano Jaime F. , Breen Matthew , Kierczak Marcin , Forsberg-Nilsson Karin , Marinescu Voichita D. , Lindblad-Toh Kerstin
Published: March 2023

File contains list of GISTIC Defined Recurrent SCNA genes that overlap between Humans and Dogs.
Table S6 from RNF6 Promotes Colorectal Cancer by Activating the Wnt/β-Catenin Pathway via Ubiquitination of TLE3
Authors: Liu Lei , Zhang Yanquan , Wong Chi Chun , Zhang Jingwan , Dong Yujuan , Li Xiangchun , Kang Wei , Chan Francis K.L. , Sung Joseph J.Y. , Yu Jun
Published: March 2023

Cox regression analysis of potential poor prognostic factors for patients with colorectal cancer, (Beijing cohort 1, n=111)
Supplementary methods from RNF6 Promotes Colorectal Cancer by Activating the Wnt/β-Catenin Pathway via Ubiquitination of TLE3
Authors: Liu Lei , Zhang Yanquan , Wong Chi Chun , Zhang Jingwan , Dong Yujuan , Li Xiangchun , Kang Wei , Chan Francis K.L. , Sung Joseph J.Y. , Yu Jun
Published: March 2023

Supplementary methods
Figure S3 from RNF6 Promotes Colorectal Cancer by Activating the Wnt/β-Catenin Pathway via Ubiquitination of TLE3
Authors: Liu Lei , Zhang Yanquan , Wong Chi Chun , Zhang Jingwan , Dong Yujuan , Li Xiangchun , Kang Wei , Chan Francis K.L. , Sung Joseph J.Y. , Yu Jun
Published: March 2023

RNF6 depletion arrests cell cycle progression, increases cell apoptosis and inhibits tumor migration.
Figure S1 from High USP6NL Levels in Breast Cancer Sustain Chronic AKT Phosphorylation and GLUT1 Stability Fueling Aerobic Glycolysis
Authors: Avanzato Daniele , Pupo Emanuela , Ducano Nadia , Isella Claudio , Bertalot Giovanni , Luise Chiara , Pece Salvatore , Bruna Alejandra , Rueda Oscar M. , Caldas Carlos , Di Fiore Pier Paolo , Sapino Anna , Lanzetti Letizia
Published: March 2023

USP6NL mRNA expression from METABRIC dataset in Integrative Clusters
Supplementary Table S3 from SATB2-AS1 Suppresses Colorectal Carcinoma Aggressiveness by Inhibiting SATB2-Dependent Snail Transcription and Epithelial–Mesenchymal Transition
Authors: Wang Yi-Qing , Jiang Dong-Mei , Hu Sha-Sha , Zhao Li , Wang Lan , Yang Min-Hui , Ai Mei-Ling , Jiang Hui-Juan , Han Yue , Ding Yan-Qing , Wang Shuang
Published: March 2023

Supplementary Table S3 shows the correlation between the clinicopathological features and SATB2-AS1 expression.
Movie S1 from A Soft Microenvironment Protects from Failure of Midbody Abscission and Multinucleation Downstream of the EMT-Promoting Transcription Factor Snail
Authors: Simi Allison K. , Anlaş Alişya A. , Stallings-Mann Melody , Zhang Sherry , Hsia Tiffaney , Cichon Magdalena , Radisky Derek C. , Nelson Celeste M.
Published: March 2023

Movie S1 shows timelapse of cells undergoing failure of abscission and becoming multinucleated. Nuclei are in red.
Supplementary Data from Targeting the Chromosomal Passenger Complex Subunit INCENP Induces Polyploidization, Apoptosis, and Senescence in Neuroblastoma
Authors: Sun Ming , Veschi Veronica , Bagchi Sukriti , Xu Man , Mendoza Arnulfo , Liu Zhihui , Thiele Carol J.
Published: March 2023

Supplementary Figures with legends- Supplementary Figures S1 through S7. (1) Fig.S1 shows the data about transcriptional regulation of INCENP by MYCN in NB cells and the results of Kaplan-Meier survival probability analysis based on the expression of INCENP in NB tumors in the Kocak cohort. (2) Fig.S2 shows the results of rescue experiment of INCENP knockdown by overexpressing a siRNA resistant form of INCENP and the growth inhibition effects in additional NB cell lines (KCNR and Kelly cells) upon INCENP depletion. (3) Fig.S3 shows the results of colony formation assay and soft agar assay performed using dox inducible shCTRL NB cells. (4) Fig.S4 shows the xenograft growth of shCTRL NB tumors and the murine survival of shCTRL tumor-bearing mice upon dox treatment. (5) Fig. S5 shows the polyploidy phenotypes in SY5Y, 293T, ARPE19 and HeLa cells. (6) Fig.S6 shows the induction of DNA damage response in shINCENP NB cells and the induction of apoptosis in both shINCENP NB cells and INCENP-depleted 293T, ARPE19 an HeLa cells. (7) Fig.S7 shows the cellular senescence phenotypes upon Aurora B inhibition or shINCENP mediated INCENP silencing in NB cells.
Figure S1 from Methylation of C/EBPα by PRMT1 Inhibits Its Tumor-Suppressive Function in Breast Cancer
Authors: Liu Li-Ming , Sun Wen-Zheng , Fan Xue-Zhe , Xu Ya-Li , Cheng Mo-Bin , Zhang Ye
Published: March 2023

Immunochemical staining for a microarray including 103 samples
Supplementary File S1 from A Gene Expression Classifier from Whole Blood Distinguishes Benign from Malignant Lung Nodules Detected by Low-Dose CT
Authors: Kossenkov Andrew V. , Qureshi Rehman , Dawany Noor B. , Wickramasinghe Jayamanna , Liu Qin , Majumdar R. Sonali , Chang Celia , Widura Sandy , Kumar Trisha , Horng Wen-Hwai , Konnisto Eric , Criner Gerard , Tsay Jun-Chieh J. , Pass Harvey , Yendamuri Sai , Vachani Anil , Bauer Thomas , Nam Brian , Rom William N. , Showe Michael K. , Showe Louise C.
Published: March 2023

Ranking of Nanostring Custom panel probes in nPNC classifier
Supplementary Video S1_NME1 from Metastasis Suppressors NME1 and NME2 Promote Dynamin 2 Oligomerization and Regulate Tumor Cell Endocytosis, Motility, and Metastasis
Authors: Khan Imran , Gril Brunilde , Steeg Patricia S.
Published: March 2023

Endocytosis of pHrodo Red-EGF in NME1 expressing cells
Figure S3 from Genetic Ablation of the Cystine Transporter xCT in PDAC Cells Inhibits mTORC1, Growth, Survival, and Tumor Formation via Nutrient and Oxidative Stresses
Authors: Daher Boutaina , Parks Scott K. , Durivault Jerome , Cormerais Yann , Baidarjad Hanane , Tambutte Eric , Pouysségur Jacques , Vučetić Milica
Published: March 2023

Growth, Bodipy and Western Blot
Supplementary Data from Activation of the Unfolded Protein Response via Inhibition of Protein Disulfide Isomerase Decreases the Capacity for DNA Repair to Sensitize Glioblastoma to Radiotherapy
Authors: Liu Yajing , Ji Wenbin , Shergalis Andrea , Xu Jiaqi , Delaney Amy M. , Calcaterra Andrew , Pal Anupama , Ljungman Mats , Neamati Nouri , Rehemtulla Alnawaz
Published: March 2023

Figures and Tables for supplementary data. Supplementary Table 1: Primers used for qPCR analysis of PDIA1, GRP78, RAD51 and GAPDH gene expression; Supplementary Table 2: Antibodies used for western blot and inmmunocytochemistry studies; Supplementary Figure 1: PDIA1 shRNA downregulates RAD51; Supplementary Figure 2: PDI KD leads to reduced RAD51 stability in GBM cells; Supplementary Figure 3: Tunicamycin treatment leads to reduced RAD51 stability in GBM cells; Supplementary Figure 4: Silencing PDIA1 sensitizes GBM cells
Supplementary Data from Activation of the Unfolded Protein Response via Inhibition of Protein Disulfide Isomerase Decreases the Capacity for DNA Repair to Sensitize Glioblastoma to Radiotherapy
Authors: Liu Yajing , Ji Wenbin , Shergalis Andrea , Xu Jiaqi , Delaney Amy M. , Calcaterra Andrew , Pal Anupama , Ljungman Mats , Neamati Nouri , Rehemtulla Alnawaz
Published: March 2023

Figure legends for supplementary data
Supplementary Data from Mutant IDH Sensitizes Gliomas to Endoplasmic Reticulum Stress and Triggers Apoptosis via miR-183-Mediated Inhibition of Semaphorin 3E
Authors: Zhang Ying , Pusch Stefan , Innes James , Sidlauskas Kastytis , Ellis Matthew , Lau Joanne , El-Hassan Tedani , Aley Natasha , Launchbury Francesca , Richard-Loendt Angela , deBoer Jasper , Chen Sheng , Wang Lei , von Deimling Andreas , Li Ningning , Brandner Sebastian
Published: March 2023

Lists of primers, antibodies, miR and survival, Supplemental Table 1.
Figure S4 from Mutant IDH Sensitizes Gliomas to Endoplasmic Reticulum Stress and Triggers Apoptosis via miR-183-Mediated Inhibition of Semaphorin 3E
Authors: Zhang Ying , Pusch Stefan , Innes James , Sidlauskas Kastytis , Ellis Matthew , Lau Joanne , El-Hassan Tedani , Aley Natasha , Launchbury Francesca , Richard-Loendt Angela , deBoer Jasper , Chen Sheng , Wang Lei , von Deimling Andreas , Li Ningning , Brandner Sebastian
Published: March 2023

Generation of IDH mutant tumours with adeno Cre mediated recombination
Supplementary Table 2 from miR-450a Acts as a Tumor Suppressor in Ovarian Cancer by Regulating Energy Metabolism
Authors: Muys Bruna Rodrigues , Sousa Josane F. , Plaça Jessica Rodrigues , de Araújo Luíza Ferreira , Sarshad Aishe A. , Anastasakis Dimitrios G. , Wang Xiantao , Li Xiao Ling , de Molfetta Greice Andreotti , Ramão Anelisa , Lal Ashish , Vidal Daniel Onofre , Hafner Markus , Silva Wilson A.
Published: March 2023

Supplementary Table 2. List of targets from miR-450a derived from PAR-CLIP analysis.
Figure S1 from Mutant IDH Sensitizes Gliomas to Endoplasmic Reticulum Stress and Triggers Apoptosis via miR-183-Mediated Inhibition of Semaphorin 3E
Authors: Zhang Ying , Pusch Stefan , Innes James , Sidlauskas Kastytis , Ellis Matthew , Lau Joanne , El-Hassan Tedani , Aley Natasha , Launchbury Francesca , Richard-Loendt Angela , deBoer Jasper , Chen Sheng , Wang Lei , von Deimling Andreas , Li Ningning , Brandner Sebastian
Published: March 2023

Cloning vector to generate IDH mutant mouse
Supplementary Tables S1-S3 from tRNA Fragments Show Intertwining with mRNAs of Specific Repeat Content and Have Links to Disparities
Authors: Telonis Aristeidis G. , Loher Phillipe , Magee Rogan , Pliatsika Venetia , Londin Eric , Kirino Yohei , Rigoutsos Isidore
Published: March 2023

This file contains the statistics of tRF profiling, His(-1U) and length rations across the 32 cancer types
Supplementary Figure S3 from Psychologic Distress Is Associated with Cancer-Specific Mortality among Patients with Cervical Cancer
Authors: Lu Donghao , Andrae Bengt , Valdimarsdóttir Unnur , Sundström Karin , Fall Katja , Sparén Pär , Fang Fang
Published: March 2023

Associations of psychological distress with the risk of overall mortality, by the timing of the occurrence of distress.
Supplemental Table 3 from Inactivation of Bap1 Cooperates with Losses of Nf2 and Cdkn2a to Drive the Development of Pleural Malignant Mesothelioma in Conditional Mouse Models
Authors: Kukuyan Anna-Mariya , Sementino Eleonora , Kadariya Yuwaraj , Menges Craig W. , Cheung Mitchell , Tan Yinfei , Cai Kathy Q. , Slifker Michael J. , Peri Suraj , Klein-Szanto Andres J. , Rauscher Frank J. , Testa Joseph R.
Published: March 2023

100 of the top gene sets differentially affected (FDR < 0.25) in MMs from triple-CKOa versus those from double-CKO mice by using GSEA applied to MSigDB gene sets.
Supplemental Table 2 from Inactivation of Bap1 Cooperates with Losses of Nf2 and Cdkn2a to Drive the Development of Pleural Malignant Mesothelioma in Conditional Mouse Models
Authors: Kukuyan Anna-Mariya , Sementino Eleonora , Kadariya Yuwaraj , Menges Craig W. , Cheung Mitchell , Tan Yinfei , Cai Kathy Q. , Slifker Michael J. , Peri Suraj , Klein-Szanto Andres J. , Rauscher Frank J. , Testa Joseph R.
Published: March 2023

Differences in survival of mice succumbing to malignant mesothelioma after IT injection with Adeno-Cre in different conditional knockout mouse groups.
Supplementary Table 1 from Measurement of Plasma Cell-Free Mitochondrial Tumor DNA Improves Detection of Glioblastoma in Patient-Derived Orthotopic Xenograft Models
Authors: Mair Richard , Mouliere Florent , Smith Christopher G. , Chandrananda Dineika , Gale Davina , Marass Francesco , Tsui Dana W.Y. , Massie Charles E. , Wright Alan J. , Watts Colin , Rosenfeld Nitzan , Brindle Kevin M.
Published: March 2023

This file presents the raw data for the cell free DNA experiments.
Table S2, Table S4, Table S6, Figure S1, Figure S2, Figure S3, Figure S4, Figure S5, Figure S6, Supplementary Methods from MDM4 Is Targeted by 1q Gain and Drives Disease in Burkitt Lymphoma
Authors: Hüllein Jennifer , Słabicki Mikołaj , Rosolowski Maciej , Jethwa Alexander , Habringer Stefan , Tomska Katarzyna , Kurilov Roma , Lu Junyan , Scheinost Sebastian , Wagener Rabea , Huang Zhiqin , Lukas Marina , Yavorska Olena , Helfrich Hanne , Scholtysik René , Bonneau Kyle , Tedesco Donato , Küppers Ralf , Klapper Wolfram , Pott Christiane , Stilgenbauer Stephan , Burkhardt Birgit , Löffler Markus , Trümper Lorenz H. , Hummel Michael , Brors Benedikt , Zapatka Marc , Siebert Reiner , Kreuz Markus , Keller Ulrich , Huber Wolfgang , Zenz Thorsten
Published: March 2023

Table S2. Genetic characterization of BL cell lines; Table S4. Genetic aberrations in aggressive B-NHL patients from the MMML consortium; Table S5. Annotation of TP53 mutation and MDM4 gain in cell lines from the Achilles project; Figure S1. RNAi screen identifies common and context-specific essential genes; Figure S2. Genes essential in the context of TP53 mutation; Figure S3. p53 reactivation causes cytotoxic effect; Figure S4. Molecular impact of MDM2 or MDM4 knock-down; Figure S5. Genetic profile in TP53wt and TP53mut aggressive B-NHL patients; Figure S6. Basal MDM4 mRNA in aggressive lymphomas stratified by TP53 mutation and 1q status.
Figure S4 from Glutamate Decarboxylase 65 Signals through the Androgen Receptor to Promote Castration Resistance in Prostate Cancer
Authors: Gao Yi , Chen Lu , Du ZunGuo , Gao WenChao , Wu ZhengMing , Liu XiuJuan , Huang Hai , Xu DanFeng , Li QingQuan
Published: March 2023

Figure S4 shows the binding of GABA, the product of GAD65, to AR in CRPC
Figure S1 from Glutamate Decarboxylase 65 Signals through the Androgen Receptor to Promote Castration Resistance in Prostate Cancer
Authors: Gao Yi , Chen Lu , Du ZunGuo , Gao WenChao , Wu ZhengMing , Liu XiuJuan , Huang Hai , Xu DanFeng , Li QingQuan
Published: March 2023

Figure S1 shows increased GABA shunt activity in CRPC
Supplementary Figure S1-S10 from Long Noncoding RNA ELIT-1 Acts as a Smad3 Cofactor to Facilitate TGFβ/Smad Signaling and Promote Epithelial–Mesenchymal Transition
Authors: Sakai Satoshi , Ohhata Tatsuya , Kitagawa Kyoko , Uchida Chiharu , Aoshima Takuya , Niida Hiroyuki , Suzuki Tetsuro , Inoue Yasumichi , Miyazawa Keiji , Kitagawa Masatoshi
Published: March 2023

FS1:Representative photographs of Fig. 1A; FS2:EMT-related gene expression; FS3:Snail induction by TGF-ÃŸ; FS4:Contribution of ELIT-1 on Snail expression; FS5:Effects on cell proliferation; FS6: EMT-related gene expression by ELIT-1; FS7:Smad3 binding to promoters; FS8:Effects of ELIT-1 overexpression (expression); FS9:Effect of ELIT-1 on heterodimer formation and translocation; FS10: Effects of ELIT-1 overexpression (ChIP)
Table S1 from Gaussian Mixture Models for Probabilistic Classification of Breast Cancer
Authors: Prabakaran Indira , Wu Zhengdong , Lee Changgun , Tong Brian , Steeman Samantha , Koo Gabriel , Zhang Paul J. , Guvakova Marina A.
Published: March 2023

Table S1. Patient and tumor characteristics of the study population.
Supplementary Data from Gaussian Mixture Models for Probabilistic Classification of Breast Cancer
Authors: Prabakaran Indira , Wu Zhengdong , Lee Changgun , Tong Brian , Steeman Samantha , Koo Gabriel , Zhang Paul J. , Guvakova Marina A.
Published: March 2023

Figure S1. Bland-Altman plot. It shows the acceptable average of the differences (bias = -0.049; SD = 0.1038) between two image-based methods of measuring the IGF-IR expression levels in IHC stained tissue: ImageJ and COMPAi.
Supplementary Figure 1 from Volumetric Optoacoustic Imaging Unveils High-Resolution Patterns of Acute and Cyclic Hypoxia in a Murine Model of Breast Cancer
Authors: Ron Avihai , Deán-Ben Xosé Luís , Gottschalk Sven , Razansky Daniel
Published: March 2023

Figure S1 shows averaged oxygen saturation profiles for three different tumors.
Supplementary Data from Volumetric Optoacoustic Imaging Unveils High-Resolution Patterns of Acute and Cyclic Hypoxia in a Murine Model of Breast Cancer
Authors: Ron Avihai , Deán-Ben Xosé Luís , Gottschalk Sven , Razansky Daniel
Published: March 2023

All supplementary data
Supplementary Video S2 from Deletion of Calcineurin Promotes a Protumorigenic Fibroblast Phenotype
Authors: Lieberman Allyson , Barrett Richard , Kim Jaewon , Zhang Kathy L. , Avery Diana , Monslow James , Kim Hyunsoo , Kim Bang-Jin , Puré Ellen , Ryeom Sandra
Published: March 2023

Live cell imaging of PDACs on FDMs.
Supplementary Video S1 from Deletion of Calcineurin Promotes a Protumorigenic Fibroblast Phenotype
Authors: Lieberman Allyson , Barrett Richard , Kim Jaewon , Zhang Kathy L. , Avery Diana , Monslow James , Kim Hyunsoo , Kim Bang-Jin , Puré Ellen , Ryeom Sandra
Published: March 2023

Live cell imaging of scratch assays.
Supplementary Figure S5 from Deletion of Calcineurin Promotes a Protumorigenic Fibroblast Phenotype
Authors: Lieberman Allyson , Barrett Richard , Kim Jaewon , Zhang Kathy L. , Avery Diana , Monslow James , Kim Hyunsoo , Kim Bang-Jin , Puré Ellen , Ryeom Sandra
Published: March 2023

Effects of caNFATc1 expression in CN-/- fibroblasts on collagen remodeling.
Supplementary Figure S3 from Deletion of Calcineurin Promotes a Protumorigenic Fibroblast Phenotype
Authors: Lieberman Allyson , Barrett Richard , Kim Jaewon , Zhang Kathy L. , Avery Diana , Monslow James , Kim Hyunsoo , Kim Bang-Jin , Puré Ellen , Ryeom Sandra
Published: March 2023

Effects of caNFATc1 expression in CN-/- fibroblasts on collagenase activity.
Supplementary Figures from Sphingosine Kinase 1 Signaling Promotes Metastasis of Triple-Negative Breast Cancer
Authors: Acharya Sunil , Yao Jun , Li Ping , Zhang Chenyu , Lowery Frank J. , Zhang Qingling , Guo Hua , Qu Jingkun , Yang Fei , Wistuba Ignacio I. , Piwnica-Worms Helen , Sahin Aysegul A. , Yu Dihua
Published: March 2023

SPHK1 expression in TNBC tumors and cell-lines. SPHK1 overexpression increase metastatic related properties. SPHK1 knockdown has no significant difference in cell proliferation but decrease invasion and migration potential in vitro. SPHK1 knockdown has no significant difference in tumor cell proliferation but increase apoptosis. Correlation between SPHK1 and FSCN1 expression. Ectopic expression of FSCN1 rescue the invasive and migrative potential of SPHK1 knockdown cells in vitro. FSCN1 knockdown decreased metastasis related properties in vitro. SPHK1 plays role in increasing the transcriptional rate of the FSCN1 gene transcription but not the mRNA stability. Safingol and Bortezomib treatment on TNBC cells in vitro and in vivo. Inhibition of lung metastasis by safingol plus bortezomib combination treatment when primary tumors were removed at similar sizes.
Supplementary Figure 1 from Activation of Peroxisome Proliferator-Activated Receptors α and δ Synergizes with Inflammatory Signals to Enhance Adoptive Cell Therapy
Authors: Saibil Samuel D. , St. Paul Michael , Laister Robert C. , Garcia-Batres Carlos R. , Israni-Winger Kavita , Elford Alisha R. , Grimshaw Natasha , Robert-Tissot Céline , Roy Dominic G. , Jones Russell G. , Nguyen Linh T. , Ohashi Pamela S.
Published: March 2023

Cpt1a, PPARs and FAO-related gene expression
Supplementary text from Chromosome 12p Amplification in Triple-Negative/BRCA1-Mutated Breast Cancer Associates with Emergence of Docetaxel Resistance and Carboplatin Sensitivity
Authors: Gómez-Miragaya Jorge , Díaz-Navarro Ander , Tonda Raul , Beltran Sergi , Palomero Luis , Palafox Marta , Dobrolecki Lacey E. , Huang Chen , Vasaikar Suhas , Zhang Bing , Wulf Gerburg M. , Collado-Sole Alejandro , Trinidad Eva M. , Muñoz Purificación , Paré Laia , Prat Aleix , Bruna Alejandra , Caldas Carlos , Arribas Joaquín , Soler-Monso María Teresa , Petit Anna , Balmaña Judith , Cruz Cristina , Serra Violeta , Pujana Miguel Angel , Lewis Michael T. , Puente Xose S. , González-Suárez Eva
Published: March 2023

Supplementary methods and legends for supplementary figures
Supplemental Figure 5 from Stearoyl-CoA Desaturase 1 Protects Ovarian Cancer Cells from Ferroptotic Cell Death
Authors: Tesfay Lia , Paul Bibbin T. , Konstorum Anna , Deng Zhiyong , Cox Anderson O. , Lee Jingyun , Furdui Cristina M. , Hegde Poornima , Torti Frank M. , Torti Suzy V.
Published: March 2023

Knockdown of SCD1 increases lipid peroxidation and cell death in cells treated with a ferroptosis inducer
Supplemental Figure 1 from Stearoyl-CoA Desaturase 1 Protects Ovarian Cancer Cells from Ferroptotic Cell Death
Authors: Tesfay Lia , Paul Bibbin T. , Konstorum Anna , Deng Zhiyong , Cox Anderson O. , Lee Jingyun , Furdui Cristina M. , Hegde Poornima , Torti Frank M. , Torti Suzy V.
Published: March 2023

Enlarged image of Figure 1D
Supplementary Table S1 from SRSF3-Regulated RNA Alternative Splicing Promotes Glioblastoma Tumorigenicity by Affecting Multiple Cellular Processes
Authors: Song Xiao , Wan Xuechao , Huang Tianzhi , Zeng Chang , Sastry Namratha , Wu Bingli , James C. David , Horbinski Craig , Nakano Ichiro , Zhang Wei , Hu Bo , Cheng Shi-Yuan
Published: March 2023

Primers and gRNA sequences
Supplementary Figures from Targeting Myeloperoxidase Disrupts Mitochondrial Redox Balance and Overcomes Cytarabine Resistance in Human Acute Myeloid Leukemia
Authors: Hosseini Mohsen , Rezvani Hamid Reza , Aroua Nesrine , Bosc Claudie , Farge Thomas , Saland Estelle , Guyonnet-Dupérat Véronique , Zaghdoudi Sonia , Jarrou Latifa , Larrue Clément , Sabatier Marie , Mouchel Pierre Luc , Gotanègre Mathilde , Piechaczyk Marc , Bossis Guillaume , Récher Christian , Sarry Jean-Emmanuel
Published: March 2023

Supplementary Figures 1-7
Supplementary Data from Targeting Myeloperoxidase Disrupts Mitochondrial Redox Balance and Overcomes Cytarabine Resistance in Human Acute Myeloid Leukemia
Authors: Hosseini Mohsen , Rezvani Hamid Reza , Aroua Nesrine , Bosc Claudie , Farge Thomas , Saland Estelle , Guyonnet-Dupérat Véronique , Zaghdoudi Sonia , Jarrou Latifa , Larrue Clément , Sabatier Marie , Mouchel Pierre Luc , Gotanègre Mathilde , Piechaczyk Marc , Bossis Guillaume , Récher Christian , Sarry Jean-Emmanuel
Published: March 2023

Supplementary Table 1 Clinical and mutational features of AML patient samples used in this study
Supplementary Table 3 from Antitumor Effects of Anti-Semaphorin 4D Antibody Unravel a Novel Proinvasive Mechanism of Vascular-Targeting Agents
Authors: Zuazo-Gaztelu Iratxe , Pàez-Ribes Marta , Carrasco Patricia , Martín Laura , Soler Adriana , Martínez-Lozano Mar , Pons Roser , Llena Judith , Palomero Luis , Graupera Mariona , Casanovas Oriol
Published: March 2023

List of cytokines modified in response to anti-Sema4D treatment (Cytokine array)
Supplementary Figure Legends from Landscape of Germline and Somatic Mitochondrial DNA Mutations in Pediatric Malignancies
Authors: Triska Petr , Kaneva Kristiyana , Merkurjev Daria , Sohail Noor , Falk Marni J. , Triche Timothy J. , Biegel Jaclyn A. , Gai Xiaowu
Published: March 2023

Figure Legends for Supplementary Figures 1-6
Supplementary Figure S6 from A Model System for Studying the DNMT3A Hotspot Mutation (DNMT3AR882) Demonstrates a Causal Relationship between Its Dominant-Negative Effect and Leukemogenesis
Authors: Lu Rui , Wang Jun , Ren Zhihong , Yin Jiekai , Wang Yinsheng , Cai Ling , Wang Gang Greg
Published: March 2023

This file contains Supplementary Figure S6, demonstrating that bromodomain inhibition suppressed AML related to DNMT3A hotspot mutation in murine models.
Supplementary Table S1 from Inactivation of Proprotein Convertases in T Cells Inhibits PD-1 Expression and Creates a Favorable Immune Microenvironment in Colorectal Cancer
Authors: Tomé Mercedes , Pappalardo Angela , Soulet Fabienne , López José Javier , Olaizola Jone , Leger Yannick , Dubreuil Marielle , Mouchard Amandine , Fessart Delphine , Delom Frédéric , Pitard Vincent , Bechade Dominique , Fonck Mariane , Rosado Juan Antonio , Ghiringhelli François , Déchanet-Merville Julie , Soubeyran Isabelle , Siegfried Geraldine , Evrard Serge , Khatib Abdel-Majid
Published: March 2023

Primer sequences
Figure S4 from Diminished AHR Signaling Drives Human Acute Myeloid Leukemia Stem Cell Maintenance
Authors: Ly Michelle , Rentas Stefan , Vujovic Ana , Wong Nicholas , Moreira Steven , Xu Joshua , Holzapfel Nicholas , Bhatia Sonam , Tran Damian , Minden Mark D. , Draper Jonathan S. , Hope Kristin J.
Published: March 2023

This figure displays the synergy of AHR agonism with ATRA in promoting AML cell line differentiation
Figure S1 from A Microbial Siderophore-Inspired Self-Gelling Hydrogel for Noninvasive Anticancer Phototherapy
Authors: Ko Seungbeom , Park Joo Yeon , Oh Yu-Kyoung
Published: March 2023

Photothermal properties of catechol compounds
Supplementary Data S1 from Oncogenic KRAS Sensitizes Lung Adenocarcinoma to GSK-J4–Induced Metabolic and Oxidative Stress
Authors: Hong Beom-Jin , Park Woo-Yong , Kim Hwa-Ryeon , Moon Jin Woo , Lee Ho Yeon , Park Jun Hyung , Kim Seon-Kyu , Oh Youngbin , Roe Jae-Seok , Kim Mi-Young
Published: March 2023

list of genes regulated from RNA sequencing analysis