bluuebunny/crossref_metadata_2025 huggingface dataset:
Investigation into the Phytochemical Composition, Antioxidant Properties, and In-Vitro Anti-Diabetic Efficacy of Ulva lactuca Extracts
Authors: Ouahabi Safae , Daoudi Nour Elhouda , Loukili El Hassania , Asmae Hbika , Merzouki Mohammed , Bnouham Mohamed , Challioui Allal , Hammouti Belkheir , Fauconnier Marie-Laure , Rhazi Larbi , Ayerdi Gotor Alicia , Depeint Flore , Ramdani Mohammed
Published: May 2024

In this research, the chemical compositions of various extracts obtained from Ulva lactuca, a type of green seaweed collected from the Nador lagoon in the northern region of Morocco, were compared. Their antioxidant and anti-diabetic properties were also studied. Using GC–MS technology, the fatty acid content of the samples was analyzed, revealing that palmitic acid, eicosenoic acid, and linoleic acid were the most abundant unsaturated fatty acids present in all samples. The HPLC analysis indicated that sinapic acid, naringin, rutin, quercetin, cinnamic acid, salicylic acid, apigenin, flavone, and flavanone were the most prevalent phenolic compounds. The aqueous extract obtained by maceration showed high levels of polyphenols and flavonoids, with values of 379.67 ± 0.09 mg GAE/g and 212.11 ± 0.11 mg QE/g, respectively. This extract also exhibited an impressive ability to scavenge DPPH radicals, as indicated by its IC50 value of 0.095 ± 0.12 mg/mL. Additionally, the methanolic extract obtained using the Soxhlet method demonstrated antioxidant properties by preventing β-carotene discoloration, with an IC50 of 0.087 ± 0.14 mg/mL. Results from in-vitro studies showed that extracts from U. lactuca were able to significantly inhibit the enzymatic activity of α-amylase and α-glucosidase. Among the various extracts, methanolic extract (S) has been identified as the most potent inhibitor, exhibiting a statistically similar effect to that of acarbose. Furthermore, molecular docking models were used to evaluate the interaction between the primary phytochemicals found in these extracts and the human pancreatic α-amylase and α-glucosidase enzymes. These findings suggest that U. lactuca extracts contain bioactive substances that are capable of reducing enzyme activity more effectively than the commercially available drug, acarbose.
New Naphthalene Derivatives from the Mangrove Endophytic Fungus Daldinia eschscholzii MCZ-18
Authors: Xu Zhiyong , Feng Ting , Wen Zhenchang , Li Qing , Chen Biting , Liu Pinghuai , Xu Jing
Published: May 2024

Five new naphthalene derivatives dalesconosides A–D, F (1–4, 6), a known synthetic analogue named dalesconoside E (5), and eighteen known compounds (7–24) were isolated from Daldinia eschscholzii MCZ-18, which is an endophytic fungus obtained from the Chinese mangrove plant Ceriops tagal. Differing from previously reported naphthalenes, compounds 1 and 2 were bearing a rare ribofuranoside substituted at C-1 and the 5-methyltetrahydrofuran-2,3-diol moiety, respectively. Their structures were determined by detailed nuclear magnetic resonance (NMR) and mass spectroscopic (MS) analyses, while the absolute configurations were established by theoretical electronic circular dichroism (ECD) calculation. Compounds 1, 3, 13–17 and 19 showed broad ranges of antimicrobial spectrum against five indicator test microorganisms (Enterococcus faecalis, Methicillin-resistant Staphylococcus aureus, Escherichia coli, Pseudomonas aeruginosa and Candida albicans); especially, 1, 16 and 17 were most potent. The variations in structure and attendant biological activities provided fresh insights concerning structure−activity relationships for the naphthalene derivatives.
Miniaturized Cultivation Profiling (MATRIX)-Facilitated Discovery of Noonazines A–C and Noonaphilone A from an Australian Marine-Derived Fungus, Aspergillus noonimiae CMB-M0339
Authors: Kankanamge Sarani , Bernhardt Paul V. , Khalil Zeinab G. , Capon Robert J.
Published: May 2024

Subjecting the Australian marine-derived fungus Aspergillus noonimiae CMB-M0339 to cultivation profiling using an innovative miniaturized 24-well plate format (MATRIX) enabled access to new examples of the rare class of 2,6-diketopiperazines, noonazines A–C (1–3), along with the known analogue coelomycin (4), as well as a new azaphilone, noonaphilone A (5). Structures were assigned to 1–5 on the basis of a detailed spectroscopic analysis, and in the case of 1–2, an X-ray crystallographic analysis. Plausible biosynthetic pathways are proposed for 1–4, involving oxidative Schiff base coupling/dimerization of a putative Phe precursor. Of note, 2 incorporates a rare meta-Tyr motif, typically only reported in a limited array of Streptomyces metabolites. Similarly, a plausible biosynthetic pathway is proposed for 5, highlighting a single point for stereo-divergence that allows for the biosynthesis of alternate antipodes, for example, the 7R noonaphilone A (5) versus the 7S deflectin 1a (6).
The Identification of Peptide Inhibitors of the Coronavirus 3CL Protease from a Fucus ceranoides L. Hydroalcoholic Extract Using a Ligand-Fishing Strategy
Authors: Duarte Filho Luiz Antonio Miranda de Souza , Yanaguibashi Leal Cintia Emi , Bodet Pierre-Edouard , Beserra de Alencar Filho Edilson , Almeida Jackson Roberto Guedes da Silva , Porta Zapata Manon , Achour Oussama , Groult Hugo , Gouveia Veloso Carlos Arthur , Viegas Júnior Claudio , Bourgougnon Nathalie , Picot Laurent
Published: May 2024

Brown seaweeds of the Fucus genus represent a rich source of natural antiviral products. In this study, a Fucus ceranoides hydroalcoholic extract (FCHE) was found to inhibit 74.2 ± 1.3% of the proteolytic activity of the free SARS-CoV-2 3CL protease (3CLpro), an enzyme that plays a pivotal role in polyprotein processing during coronavirus replication and has been identified as a relevant drug discovery target for SARS- and MERS-CoVs infections. To purify and identify 3CLpro ligands with potential inhibitory activity using a one-step approach, we immobilized the enzyme onto magnetic microbeads (3CLpro-MPs), checked that the enzymatic activity was maintained after grafting, and used this bait for a ligand-fishing strategy followed by a high-resolution mass spectrometry analysis of the fished-out molecules. Proof of concept for the ligand-fishing capacity of the 3CLpro-MPs was demonstrated by doping the FCHE extract with the substrate peptide TSAVLQ-pNA, resulting in the preferential capture of this high-affinity peptide within the macroalgal complex matrix. Ligand fishing in the FCHE alone led to the purification and identification via high-resolution mass spectrometry (HRMS) of seven hepta-, octa-, and decapeptides in an eluate mix that significantly inhibited the free 3CLpro more than the starting FCHE (82.7 ± 2.2% inhibition). Molecular docking simulations of the interaction between each of the seven peptides and the 3CLpro demonstrated a high affinity for the enzyme’s proteolytic active site surpassing that of the most affine peptide ligand identified so far (a co-crystallographic peptide). Testing of the corresponding synthetic peptides demonstrated that four out of seven significantly inhibited the free 3CLpro (from 46.9 ± 6.4 to 76.8 ± 3.6% inhibition at 10 µM). This study is the first report identifying peptides from Fucus ceranoides with high inhibitory activity against the SARS-CoV-2 3CLprotease which bind with high affinity to the protease’s active site. It also confirms the effectiveness of the ligand-fishing strategy for the single-step purification of enzyme inhibitors from complex seaweed matrices.
An Artificial Neural Network Predicts Gender Differences of Motor and Non-Motor Symptoms of Patients with Advanced Parkinson’s Disease under Levodopa–Carbidopa Intestinal Gel
Authors: Bougea Anastasia , Derikvand Tajedin , Efthimiopoulou Efthymia
Published: May 2024

Background and Objectives: Currently, no tool exists to predict clinical outcomes in patients with advanced Parkinson’s disease (PD) under levodopa–carbidopa intestinal gel (LCIG) treatment. The aim of this study was to develop a novel deep neural network model to predict the clinical outcomes of patients with advanced PD after two years of LCIG therapy. Materials and Methods: This was a longitudinal, 24-month observational study of 59 patients with advanced PD in a multicenter registry under LCIG treatment from September 2019 to September 2021, including 43 movement disorder centers. The data set includes 649 measurements of patients, which make an irregular time series, and they are turned into regular time series during the preprocessing phase. Motor status was assessed with the Unified Parkinson’s Disease Rating Scale (UPDRS) Parts III (off) and IV. The NMS was assessed by the NMS Questionnaire (NMSQ) and the Geriatric Depression Scale (GDS), the quality of life by PDQ-39, and severity by Hoehn and Yahr (HY). Multivariate linear regression, ARIMA, SARIMA, and Long Short-Term Memory–Recurrent NeuralNetwork (LSTM-RNN) models were used. Results: LCIG significantly improved dyskinesia duration and quality of life, with men experiencing a 19% and women a 10% greater improvement, respectively. Multivariate linear regression models showed that UPDRS-III decreased by 1.5 and 4.39 units per one-unit increase in the PDQ-39 and UPDRS-IV indexes, respectively. Although the ARIMA-(2,0,2) model is the best one with AIC criterion 101.8 and validation criteria MAE = 0.25, RMSE = 0.59, and RS = 0.49, it failed to predict PD patients’ features over a long period of time. Among all the time series models, the LSTM-RNN model predicts these clinical characteristics with the highest accuracy (MAE = 0.057, RMSE = 0.079, RS = 0.0053, mean square error = 0.0069). Conclusions: The LSTM-RNN model predicts, with the highest accuracy, gender-dependent clinical outcomes in patients with advanced PD after two years of LCIG therapy.
Stable Ozonides plus Vitamin E Acetate (Ozoile) for Treatment of Genitourinary Syndrome
Authors: Ronsini Carlo , Iavarone Irene , Lacerenza Natalino , Andreoli Giada , Vastarella Maria Giovanna , De Franciscis Pasquale , Passaro Mario , De Simone Raffaella , Giraldi Domenico , Lizza Rosalia , Mainini Giampaolo
Published: May 2024

Background and Objectives: Genitourinary syndrome, previously defined as vulvovaginal atrophy, manifests with signs and symptoms deriving from estrogen diminution in the female genitourinary tract. Stable ozonides are derivatives of artemisinin found to be stable against strong basic and acidic conditions. Vitamin E is an important antioxidant diminishing the output of reactive oxygen species in the oxidation of fats and the emanation of free radicals, reducing cellular injury and aging. The primary aim of the present study was to assess the positive effects of an ozonide plus a vitamin E acetate-based compound (Ozoile) on genitourinary syndrome symptom relief after a maximum of 20 days of treatment. Materials and Methods: The inclusion criteria for patients’ enrollment were women of child-bearing age or in menopause reporting genitourinary syndrome’s related symptoms, such as pain, burning, a bad smell, dyspareunia, dryness, itching, bleeding, and nervousness. The exclusion criteria were Sjogren’s syndrome and patients administered retinoic acid, an agent that causes mucosal dryness. Participants completed a questionnaire before and after 20 days of treatment. Results: The incidence of pain decreased from 16.7% to 11.8% (p-value < 0.0001). In addition, the mean symptom intensity decreased from 2.10 to 0.87 (p-value < 0.0001). Dryness was the most frequent pre-treatment symptom and decreased from 85.5% to 53.8% (p-value < 0.0001) (mean: 2.21 vs. 0.90; p-value < 0.0001). Conclusions: Ozoile was effective in reducing most gynecologic symptoms related to genitourinary syndrome. However, further studies are needed to compare its effect with other standards of care.
Incidence and Outcomes of COVID-19 Vaccine Hypersensitivity Reactions and Success of COVID-19 Vaccine Provocation Tests Post Previous COVID-19 Vaccine Hypersensitivity
Authors: Kurniawan Adi , Koesnoe Sukamto , Yunihastuti Evy , Shatri Hamzah
Published: May 2024

Background: The COVID-19 pandemic has led to high mortality rates. There have been reports of hypersensitivity reactions with mild to severe symptoms. The COVID-19 vaccine provocation test is a vaccination protocol for individuals with a history of hypersensitivity. This study aims to determine the benefits of COVID-19 vaccine provocation tests in patients with a history of hypersensitivity reactions to COVID-19 vaccines and its influencing factors. Objective: To determine the incidence, severity, outcome of hypersensitivity reactions, and success of the COVID-19 vaccine provocation test. Methods: A retrospective cohort study was conducted, using subjects taken from medical record data at the RSCM who had received COVID-19 vaccination with a history of hypersensitivity. Data was taken from the COVID-19 vaccination records at the RSCM, BPJS Health Primary Care application. Results: From a total of 29,036 doses of the COVID-19 vaccine, 44 patients experienced hypersensitivity reactions. As many as 38.64% did not continue vaccination, 2.27% experienced mild hypersensitivity, and 59.44% were successfully vaccinated. Conclusions: People with a history of hypersensitivity reactions to COVID-19 vaccines can still receive subsequent COVID-19 vaccinations at healthcare facilities equipped with anaphylaxis kits and immunology allergists.
Application of Machine Learning in Constitutive Relationship Prediction of Porous Titanium Materials for Artificial Bone
Authors: Tan Chengzhi , Li Chunjin , Liu Zhiqiang
Published: May 2024

Artificial bone porous titanium materials are widely used in orthopedic implants. However, the traditional constitutive model is often limited by the complexity and accuracy of the model, and it is difficult to accurately and efficiently describe the constitutive relationship of porous titanium materials. In this study, structured data were established based on experimental data from published papers, and goodness of fit (R2), mean absolute error (MAE) and mean absolute percentage error (MAPE) were used to evaluate the model. The prediction effect of random forest (RF), multi-layer perceptron (MLPR) and support vector machine (SVR) on the constitutive relationship of porous titanium materials was discussed. Through comprehensive comparison, it can be seen that the RF model with max_depth of 24 and n_estimators of 160 has the best performance in prediction, and the average absolute percentage error is less than 4.4%, which means it can accurately predict the temperature sensitivity and strain rate sensitivity of porous titanium materials. And its predictive ability is better than that of the traditional constitutive model, which provides a new idea and method for the constitutive modeling of porous titanium materials.
Hybrid Zinc Coatings with Improved Corrosion Resistance Based on Chitosan Oligosaccharides
Authors: Boshkova Nelly , Grancharov Georgy , Shipochka Maria , Avdeev Georgy , Atanasova-Vladimirova Stela , Stoilova Olya , Boshkov Nikolai
Published: May 2024

In this paper, hybrid coatings based on ZnO dispersion in water soluble chitosan oligosaccharides (COS) as dispersion medium were prepared. The obtaining procedure of anti-corrosion hybrid zinc-based coatings containing COS coated ZnO particles in the metal matrix has been described. The available ZnO particles coated with COS were observed by TEM and thereafter added to the starting electrolyte for electrodeposition of hybrid zinc coatings on low-carbon steel substrates. The newly developed objects were collated with ordinary zinc coatings concerning the peculiarities of the morphology, topography and hydrophilicity of the surface (SEM and AFM analyses, water contact angle measurements), as well as corrosion behavior and electrochemical characteristics (cyclic voltammetry, potentiodynamic polarization curves, polarization resistance measurements). XRD and XPS methods were applied for studying of the crystallographic structure, as well as chemical and phase composition of the newly appeared corrosion products during the corrosion treatment in the test medium. Protective parameters of the coatings were evaluated in chloride environment of 5% NaCl solution. The results showed the effect of the concentration of the COS coated ZnO particles on the crystallographic structure and on the anticorrosion stability of the hybrid coatings.
Micro- and Nanofluidic pH Sensors Based on Electrodiffusioosmosis
Authors: Takagi Tadashi , Kishimoto Tatsunori , Doi Kentaro
Published: May 2024

Recently, various kinds of micro- and nanofluidic functional devices have been proposed, where a large surface-to-volume ratio often plays an important role in nanoscale ion transport phenomena. Ionic current analysis methods for ions, molecules, nanoparticles, and biological cells have attracted significant attention. In this study, focusing on ionic current rectification (ICR) caused by the separation of cation and anion transport in nanochannels, we successfully induce electrodiffusioosmosis with concentration differences between protons separated by nanochannels. The proton concentration in sample solutions is quantitatively evaluated in the range from pH 1.68 to 10.01 with a slope of 243 mV/pH at a galvanostatic current of 3 nA. Herein, three types of micro- and nanochannels are proposed to improve the stability and measurement accuracy of the current–voltage characteristics, and the ICR effects on pH analysis are evaluated. It is found that a nanochannel filled with polyethylene glycol exhibits increased impedance and an improved ICR ratio. The present principle is expected to be applicable to various types of ions.
Are Mouse Mammary Tumor Virus and Bovine Leukemia Virus Linked to Breast Cancer among Jordanian Women?
Authors: Khasawneh Ashraf I. , Himsawi Nisreen , Sammour Ashraf , Alorjani Mohammed , Al-Momani Hadeel , Shahin Uruk , Alotaibi Moureq R. , Al Shboul Sofian , Saleh Tareq
Published: May 2024

The investigation into the potential association between retroviruses and breast cancer (BC) presents a fascinating area of research. In this study, the focus was on assessing the presence of two retroviruses, Mouse Mammary Tumor Virus (MMTV) and Bovine Leukemia Virus (BLV), in BC samples and exploring their relationship with relevant clinicopathological variables. The study involved analyzing BC samples from 103 Jordanian female patients diagnosed with BC, as well as breast tissue samples from 25 control patients without evidence of breast malignancy. Real-time PCR was used to investigate the evidence of MMTV and BLV infection in these samples, and the findings were then correlated with various clinicopathological characteristics of BC. The results showed that BLV was detected in 19 (18.4%) of the BC samples, while MMTV was detected in only seven (6.8%). Importantly, none of the control samples tested positive for MMTV or BLV. Additionally, MMTV/BLV co-infections were reported in 1.9% of the BC cases. However, the analysis did not reveal any statistically significant associations between the presence of these retroviruses and various clinicopathological variables, such as age, molecular subtypes of BC, stage, grade, lymph node involvement, tumor size, smoking status, or family history. Despite these findings, it is crucial to acknowledge that further investigation with a larger cohort is necessary to establish a clearer association and elucidate the underlying mechanisms that may explain the exact role of retroviruses in breast carcinogenesis. This study provides insights into the potential infection by MMTV and BLV of BC and lays the groundwork for future research in this area.
Feeding Astragalus membranaceus Root Improves the Rumen Fermentation Rate in Housed Goats through the Alteration of the Rumen Community Composition
Authors: Peng Zhaoyu , Fujino Mizuki , Anand Mukul , Uyeno Yutaka
Published: May 2024

Although Astragalus membranaceus root (AMR) has been noted as an ingredient in ruminant feed, the impacts of AMR feeding on rumen fermentation and the microbial community structure within the rumen are yet to be evaluated. This study investigated the effects of AMR supplementation on rumen fermentation characteristics and microbial community structures in goats. In two sets of feeding experiments, four Japanese native goats were fed AMR (10 g/kg DM/day/head) for three weeks per experiment. The rumen fluid samples were analyzed using high-performance liquid chromatography for fermentation products and next-generation sequencing for microbial analysis. The rumen fluid samples in the second experiment were also subject to an in vitro anaerobic fermentation test. The results indicated a significant modification, with a higher volatile fatty acid (VFA) content in the rumen fluid of goats in the feeding period than before feeding (p < 0.01). The microbial analysis revealed a significant increase in community diversity (p < 0.05) following AMR feeding, and the rumen bacterial community increased in two families belonging to the order Oscillospirales in Firmicutes (p < 0.05). The phylum Verrucomicrobiota was observed to be significantly less abundant after AMR feeding than during the control period (p < 0.05). Notably, the linear discriminant analysis revealed that the families with largely unknown functions in the rumen (Oscillospiraceae, Rikenellaceae, Muribaculaceae, and vadinBB97) were the determinants of the community split between control and AMR feeding. Increased fermentation rate by AMR feeding was also supported by an in vitro culture experiment, which resulted in faster VFA production without affecting methane production in total gas production. The study demonstrated that AMR can significantly facilitate change in the bacterial community structure in the goat rumen involving a shift of the favoring fibrolytic bacteria towards VFA production. The long-term effects of AMR supplementation and its applicability across different ruminant species, with potential benefits for animal health and productivity, should be addressed.
Decoding the Gut Microbiota–Gestational Diabetes Link: Insights from the Last Seven Years
Authors: Balleza-Alejandri Luis Ricardo , Peña-Durán Emiliano , Beltrán-Ramírez Alberto , Reynoso-Roa Africa Samantha , Sánchez-Abundis Luis Daniel , García-Galindo Jesús Jonathan , Suárez-Rico Daniel Osmar
Published: May 2024

The human microbiome, a complex ecosystem of bacteria, viruses, and protozoans living in symbiosis with the host, plays a crucial role in human health, influencing everything from metabolism to immune function. Dysbiosis, or an imbalance in this ecosystem, has been linked to various health issues, including diabetes and gestational diabetes (GD). In diabetes, dysbiosis affects the function of adipose tissue, leading to the release of adipokines and cytokines, which increase inflammation and insulin resistance. During pregnancy, changes to the microbiome can exacerbate glucose intolerance, a common feature of GD. Over the past years, burgeoning insights into the gut microbiota have unveiled its pivotal role in human health. This article comprehensively reviews literature from the last seven years, highlighting the association between gut microbiota dysbiosis and GD, as well as the metabolism of antidiabetic drugs and the potential influences of diet and probiotics. The underlying pathophysiological mechanisms discussed include the impact of dysbiosis on systemic inflammation and the interplay with genetic and environmental factors. By focusing on recent studies, the importance of considering microbial health in the prevention and treatment of GD is emphasized, providing insights into future research directions and clinical applications to improve maternal–infant health outcomes.
Pathogenicity and Genomic Characteristics Analysis of Pasteurella multocida Serotype A Isolated from Argali Hybrid Sheep
Authors: Cao Xinyan , Gu Lanying , Gao Zhiyu , Fan Wenyu , Zhang Qinchuan , Sheng Jinliang , Zhang Yanbing , Sun Yanming
Published: May 2024

Respiratory diseases arising from co-infections involving Pasteurella multocida (P. multocida) and Mycoplasma ovipneumoniae (Mo) pose a substantial threat to the sheep industry. This study focuses on the isolation and identification of the P. multocida strain extracted from the lung tissue of an argali hybrid sheep infected with Mo. Kunming mice were used as a model to assess the pathogenicity of P. multocida. Subsequently, whole genome sequencing (WGS) of P. multocida was conducted using the Illumina NovaSeq PE150 platform. The whole genome sequencing analysis involved the construction of an evolutionary tree to depict conserved genes and the generation of a genome circle diagram. P. multocida, identified as serotype A, was named P. multocida SHZ01. Our findings reveal that P. multocida SHZ01 infection induces pathological manifestations, including hemorrhage and edema, in mice. The phylogenetic tree of conserved genes analyzing P. multocida from different countries and different host sources indicates close relatedness between the P. multocida SHZ01 strain and the P. multocida 40540 strain (A:12), originating from turkeys in Denmark. The genome of P. multocida SHZ01 comprises 2,378,508 base pairs (bp) with a GC content of 40.89%. Notably, this strain, designated P. multocida, exhibits two distinct gene islands and harbors a total of 80 effector proteins associated with the Type III Secretion System (T3SS). The P. multocida SHZ01 strain harbors 82 virulence genes and 54 resistance genes. In the P. multocida SHZ01 strain, the proteins, genes, and related GO and KEGG pathways have been annotated. Exploring the relationship between these annotations and the pathogenicity of the P. multocida SHZ01 strain would be valuable. This study holds great significance in further understanding the pathogenesis and genetic characteristics of the sheep-derived P. multocida SHZ01 strain. Additionally, it contributes to our understanding of respiratory diseases in the context of co-infection.
Bacteria, Fungi, and Protists Exhibit Distinct Responses to Managed Vegetation Restoration in the Karst Region
Authors: Xiao Can , Xiao Dan , Sun Mingming , Wang Kelin
Published: May 2024

Bacteria, fungi, and protists occupy a pivotal position in maintaining soil ecology. Despite limited knowledge on their responses to managed vegetation restoration strategies in karst regions, we aimed to study the essential microbial communities involved in the process of vegetation restoration. We compared microbial characteristics in four land use types: planted forests (PF), forage grass (FG), a mixture of plantation forest and forage grass (FF), and cropland (CR) as a reference. Our findings revealed that the richness of bacteria and protists was higher in FF compared to PF, while fungal richness was lower in both PF and FF than in CR. Additionally, the bacterial Shannon index in FF was higher than that in CR and PF, while the fungal and protist Shannon indices were similar across all four land use types. Significant differences were observed in the compositions of bacterial, fungal, and protist communities between FF and the other three land use types, whereas bacterial, fungal, and protist communities were relatively similar in PF and FG. In FF, the relative abundance of bacterial taxa Acidobacteria, Firmicutes, and Gemmatimonadetes was significantly higher than in PF and CR. Fungal communities were dominated by Ascomycota and Basidiomycota, with the relative abundance of Ascomycota significantly higher in FF compared to other land use types. Regarding protistan taxa, the relative abundance of Chlorophyta was higher in FF compared to CR, PF, and FG, while the relative abundance of Apicomplexa was higher in CR compared to FF. Importantly, ammonium nitrogen, total phosphorus, and microbial biomass nitrogen were identified as key soil properties predicting changes in the diversity of bacteria, fungi, and protists. Our results suggest that the microbial community under FF exhibits greater sensitivity to vegetation restoration compared to PF and FG. This sensitivity may stem from differences in soil properties, the formation of biological crusts and root systems, and management activities, resulting in variations in bacterial, fungal, and protist diversity and taxa in PF. As a result, employing a combination restoration strategy involving plantation forest and forage grass proves to be an effective approach to enhance the microbial community and thereby improve ecosystem functionality in ecologically fragile areas.
Possible Role of Cytomegalovirus in Gastric Cancer Development and Recurrent Macrolide-Resistant Campylobacter jejuni Infection in Common Variable Immunodeficiency: A Case Report and Literature Discussion
Authors: Díaz-Alberola Irene , Espuch-Oliver Andrea , Fernández-Segovia Francisco , López-Nevot Miguel Ángel
Published: May 2024

Common variable immunodeficiency (CVID) is the most common symptomatic immunodeficiency in adults. It comprises a group of syndromes whose etiology involves genetic, epigenetic, microbiota, and environmental factors. We present the case of a 46-year-old Caucasian male patient with CVID and an immune dysregulation phenotype. The particular elements of the case consisted of an atypical clinical course, which undoubtedly demonstrates the great variability of clinical manifestations that these types of patients can suffer from, including bacterial and viral infections, autoimmune phenomena, and neoplasia. Notably, the patient suffered from recurrent gastrointestinal infection with macrolide-resistant Campylobacter jejuni and gastroduodenal disease and viraemia by cytomegalovirus (CMV). In addition, CMV was postulated as the main pro-oncogenic factor contributing to the development of early-onset intestinal-type gastric adenocarcinoma, for which the patient underwent gastrectomy. The patient’s evolution was difficult, but finally, as a result of the multidisciplinary approach, clinical stabilization and improvement in his quality of life were achieved. Based on our brief literature review, this is the first reported case of this clinical complexity. Our experience could help with the management of future patients with CVID and may also update current epidemiological data on CVID.
Elizabethkingia anophelis MSU001 Isolated from Anopheles stephensi: Molecular Characterization and Comparative Genome Analysis
Authors: Chen Shicheng , Pham Steven , Terrapon Nicolas , Blom Jochen , Walker Edward D.
Published: May 2024

Elizabethkingia anophelis MSU001, isolated from Anopheles stephensi in the laboratory, was characterized by matrix-assisted laser desorption/ionization time of flight mass spectrometry (MALDI-ToF/MS), biochemical testing, and genome sequencing. Average nucleotide identity analysis revealed 99% identity with the type species E. anophelis R26. Phylogenetic placement showed that it formed a clade with other mosquito-associated strains and departed from a clade of clinical isolates. Comparative genome analyses further showed that it shared at least 98.6% of genes with mosquito-associated isolates (except E. anophelis As1), while it shared at most 88.8% of common genes with clinical isolates. Metabolites from MSU001 significantly inhibited growth of E. coli but not the mosquito gut symbionts Serratia marcescens and Asaia sp. W12. Insect-associated E. anophelis carried unique glycoside hydrolase (GH) and auxiliary activities (AAs) encoding genes distinct from those of clinical isolates, indicating their potential role in reshaping chitin structure and other components involved in larval development or formation of the peritrophic matrix. Like other Elizabethkingia, MSU001 also carried abundant genes encoding two-component system proteins (51), transcription factor proteins (188), and DNA-binding proteins (13). E. anophelis MSU001 contains a repertoire of antibiotic resistance genes and several virulence factors. Its potential for opportunistic infections in humans should be further evaluated prior to implementation as a paratransgenesis agent (by transgenesis of a symbiont of the vector).
Lacticaseibacillus rhamnosus Strains for Alleviation of Irritable Bowel Disease and Chronic Fatigue Syndrome
Authors: Zhang Liang , Ni Xue , Jiang Minzhi , Du Mengxuan , Zhang Shuwen , Jiang He , Liu Chang , Liu Shuangjiang
Published: May 2024

Lacticaseibacillus rhamnosus is applied as a probiotic to alleviate various metabolic, gastrointestinal, and psychological symptoms and diseases, and its probiotic effectiveness is strain-specific. In this study, we obtained 21 strains of Ls. rhamnosus, and their genomes were sequenced. We defined the pan- and core-genomes of Ls. rhamnosus. Phenotypes such as the assimilation of carbohydrates and antibiotic resistance were experimentally characterized and associated with genome annotations. Nine strains were selected and tested for growth rates, tolerance to acidity/alkalinity and bile acids, the production of short-chain fatty acids, and competition with pathogenic microbes. Strains WL11 and WL17 were targeted as potential probiotics and were applied in mouse model tests for the alleviation of chronic fatigue syndrome (CFS) and irritable bowel syndrome (IBS). The results showed that WL11 and WL17 effectively alleviated slow body weight gain, anxiety, poor memory, and cognitive impairment in CFS mouse models. They also reduced the expression of pro-inflammatory factors, such as TNF-α and IL-6, and alleviated intestinal peristalsis, visceral hypersensitivity, and anxiety-like behavior in IBS mouse models. This study reports new Ls. rhamnosus strain resources and their effect on alleviation of both IBS and CFS symptoms with mouse models; the probiotic functions of those strains in human patients remain to be further tested.
The Effect of Two Siderophore-Producing Bacillus Strains on the Growth Promotion of Perennial Ryegrass under Cadmium Stress
Authors: Wu Lingling , Xie Yongli , Li Junxi , Han Mingrong , Yang Xue , Chang Feifei
Published: May 2024

Cadmium (Cd) is a highly toxic and cumulative environmental pollutant. Siderophores are heavy metal chelators with high affinity to heavy metals, such as Cd. Ryegrass (Lolium perenne L.) has a potential remediation capacity for soils contaminated by heavy metals. Consequently, using ryegrass alongside beneficial soil microorganisms that produce siderophores may be an effective means to remediate soils contaminated with Cd. In this study, the Bacillus strains WL1210 and CD303, which were previously isolated from the rhizospheres of Nitraria tangutorum in Wulan and Peganum harmala L. in Dachaidan, Qinghai, China, respectively, both arid and sandy environments, were evaluated for heavy metal pollution mitigation. Our quantitative analyses have discerned that the two bacterial strains possess commendable attributes of phosphorus (P) solubilization and potassium (K) dissolution, coupled with the capacity to produce phytohormones. To assess the heavy metal stress resilience of these strains, they were subjected to a cadmium concentration gradient, revealing their incremental growth despite cadmium presence, indicative of a pronounced tolerance threshold. The subsequent phylogenetic analysis, bolstered by robust genomic data from conserved housekeeping genes, including 16S rDNA, gyr B gene sequencing, as well as dnaK and recA, delineated a species-level phylogenetic tree, thereby confirming the strains as Bacillus atrophaeus. Additionally, we identified the types of iron-carrier-producing strains as catechol (WL1210) and carboxylic acid ferrophilin (CD303). A genomic analysis uncovered functional genes in strain CD303 associated with plant growth and iron carrier biosynthesis, such as fnr and iscA. Ryegrass seed germination assays, alongside morphological and physiological evaluations under diverse heavy metal stress, underscored the strains’ potential to enhance ryegrass growth under high cadmium stress when treated with bacterial suspensions. This insight probes the strains’ utility in leveraging alpine microbial resources and promoting ryegrass proliferation.
Insights into Effects of Combined Capric and Lauric Acid on Rumen Bacterial Composition
Authors: Vadroňová Mariana , Šťovíček Adam , Výborná Alena , Tyrolová Yvona , Tichá Denisa , Joch Miroslav
Published: May 2024

This study used next-generation sequencing to assess the impact of combined capric acid (C10) and lauric acid (C12) on the ruminal bacterial composition. Eight Holstein cows were randomly assigned to two groups using a cross-over design. The cows were fed two silage-based diets with the addition of either 100 g of stearic acid per cow per day (control), or 50 g of capric acid and 50 g of lauric acid per cow per day (C10 + C12). On day 18, 250 mL of rumen fluid was collected from each cow, and DNA was isolated, amplified, and sequenced. Treatment did not alter bacterial diversity indices, the relative abundance of archaea, nor the fiber-degrading microorganisms, except for a decrease in Fibrobacter (from 2.9% to 0.7%; p = 0.04). The relative abundance of Prevotellaceae decreased (from 39.9% to 29.6%; p = 0.009), which is notable because some members help to efficiently utilize ammonia by releasing it slowly into the rumen. Furthermore, the relative abundance of Clostridia increased (from 28.4% to 41.5%; p = 0.008), which may have aided the increased ammonia–nitrogen levels in the rumen, as this class contains hyperammonia-producing members. Our study reveals alterations in bacterial abundances with implications for rumen ammonia levels, offering insights into potential strategies for modulating rumen fermentation processes and methane production in ruminant livestock.
High-Accuracy Image Segmentation Based on Hybrid Attention Mechanism for Sandstone Analysis
Authors: Dong Lanfang , Gui Hao , Yu Xiaolu , Zhang Xinming , Xu Mingyang
Published: May 2024

Mineral image segmentation based on computer vision is vital to realize automatic mineral analysis. However, current image segmentation methods still cannot effectively solve the problem of sandstone grains that are adjoined and concealed by leaching processes, and the segmentation performance of small and irregular grains still needs to be improved. This investigation explores and designs a Mask R-CNN-based sandstone image segmentation model, including a hybrid attention mechanism, loss function construction, and receptive field enlargement. Simultaneously, we propose a high-quality sandstone dataset with abundant labels named SMISD to facilitate comprehensive training of the model. The experimental results show that the proposed segmentation model has excellent segmentation performance, effectively solving adhesion and overlap between adjacent grains without affecting the classification accuracy. The model has comparable performance to other models on the COCO dataset, and performs better on SMISD than others.
Till Geochemistry as a Vector to Metasomatic Iron and Alkali-Calcic Systems and Associated Deposits in the Great Bear Magmatic Zone, Northwest Territories, Canada
Authors: Normandeau Philippe X. , McMartin Isabelle , Corriveau Louise
Published: May 2024

Recent advances in the characterization of metasomatic iron and alkali-calcic (MIAC) systems with associated iron-oxide apatite (IOA) prospects and iron-oxide–copper–gold (IOCG) and metasomatic cobalt deposits of the Great Bear magmatic zone were used to determine if the geochemistry of glacial sediments can unveil pathfinder elements indicative of mineralization and associated alteration. Analysis of variance within bedrock lithogeochemical (n = 707 samples) and till geochemical datasets (n = 92 samples) are compared. Results show that Fe, Co, Ni, Cu, As, Mo, Bi, La, Th, U, and W were identified as potential vectoring elements in different fractions of till due to their anomalous concentrations down-ice of various mineralized outcrops within the study area. For instance, Fe, Co, Cu, and Mo were established as the most useful vectoring elements in the locally derived till (<2 km down-ice) near the Sue Dianne IOCG deposit, and Fe, Co, Ni, Cu, Mo, W, Bi, and U near the Fab IOCG prospect. At the Sue Dianne deposit, the ratios of near-total (4-acid digestion) versus partial (modified aqua regia digestion) concentrations in the silt + clay-sized till fraction (<0.063 mm) for both La and Th reflect the mineralization alteration signature and define a more consistent dispersal train from mineralization compared to element concentrations mapped alone. Additional testing in an area of continuous till cover near an isolated point source is recommended to further develop the elemental ratio method for exploration of MIAC systems.
Textures and Chemical Compositions of Magnetite from Zhibo Submarine Volcanic Iron Oxide Deposit, Xinjiang, China: Implications for Re-Equilibration Processes
Authors: Wu Yang , Shen Ping , Feng Haoxuan , Li Changhao , Zhao Jiayu , Luo Yaoqing , Li Wenguang
Published: May 2024

The Awulale Iron Metallogenic Belt (AIMB) has developed many medium–large iron deposits, of which the Zhibo iron deposit is selected as the research object in this paper. The Zhibo deposit’s ore primarily consists of magnetite as the main mineral, accompanied by extensive epidotization. The mineral assemblage includes diopside, albite, actinolite, epidote, chlorite, K-feldspar, quartz, calcite, chalcopyrite, and pyrite. Magnetite is classified into two groups based on sulfide content and mineral assemblage (MagI for sulfide-free and MagII for sulfide-rich ores). Two-stage mineralization of magnetite has been identified based on mineral assemblages and paragenesis, including the magmatic stage MagI and hydrothermal stage MagII. Mag I shows inhomogeneous backscattered electron (BSE) textures and consists of BSE-light and -dark domains (Mag I-L and MagI-D). Seven subtypes of magnetite have been recognized in this deposit. MagI-L and MagI-D have formed in the magmatic stage and show BSE images in light and dark colors, respectively. MagI-L is anhedral to subhedral and is inclusion-free. MagI-D has mainly replaced MagI-L along fractures and contains inclusions and pores. MagII has formed in the hydrothermal stage and is characterized by coupled dissolution–reprecipitation (DRP) textures. It can be divided into five sub-generations, that is, MagII-1, MagII-2, MagII-3, MagII-L, and MagII-D. MagII-1, MagII-2, and MagII-3 comprise the core–mantle–rim texture, while MagII-L and MagII-D comprise the core–rim texture. MagII-1 is BSE-light and is enriched with inclusions and pores. MagII-2 has partly replaced MagII-1 and exhibits oscillatory zoning under BSE imaging. It also contains inclusions. BSE-light MagII-3 occurs as overgrowth along MagII-2 margins and is inclusion-free. MagI magnetite is enriched with V, Cr, and Ni, whereas MagII is enriched with W, Ta, Nb, Sr, Sb, Sn, Y, Zr, Mg, Al, and Ti, indicating a decreased temperature of magnetite formation. MagI-L crystallizes from the original magma, while MagI-D is formed from the residual magma enriched with incompatible elements. MagII crystallizes from later multiple hydrothermal activities through the dissolution of early magnetite and the re-precipitation of later magnetite or from MagI-D which has later undergone a hydrothermal overprinting process. According to the texture and chemical composition of magnetite from the Zhibo deposit, we suggest that the Zhibo iron deposit was formed from the initial magmatic origin and then underwent a hydrothermal overprinting process.
The Occurrence and Distribution of Nitrogen in Coal of Different Ranks and Densities
Authors: Liu Dongna , Zhang Qi , Zhao Fenghua , Liu Xile , Zhang Shangqing
Published: May 2024

Nitrogen is one of the significant pollutants emitted from coal combustion, and the study of its distribution and occurrence is very important for the efficient and clean utilization of coal resources. Four kinds of coal with different metamorphic ranks from major coal-producing provinces of China were studied. A gravity float-and-sink experiment was applied to obtain coal samples with different densities from Shanxi Province. The microscope optical method, Kjeldahl method, and X-ray photoelectron spectroscopy (XPS) were used to assess the occurrence, form, and distribution of nitrogen in the coal. The results show that the nitrogen content was about 0.47%–1.85%, and the maximum nitrogen content was positively correlated with the rank of coal, but the difference was not obvious. In the low-rank coal, the nitrogen content was mainly related to vitrinite and inertinite, while in the middle–high-rank coal, the nitrogen content was mainly related to inertinite and minerals. Pyrrolic (N-5) and pyridinic (N-6) were the main forms of nitrogen in the low-rank coal. The contents of N-6 and N-5 decreased with increases in the coal density, but the contents of quaternary N-Q1 and quaternary N-Q2 increased. N-Q2 mainly comes from fixed ammonia nitrogen in minerals, and vitrinite and liptinite contain more N-6 and less N-Q1 than inertinite. This research provides valuable evaluation guidance for the efficient utilization of coal.
Transformation of Silicate Ions into Silica under the Influence of Acid on the Structure of Serpentinite
Authors: Auyeshov Abdrazak , Arynov Kazhymuhan , Yeskibayeva Chaizada , Dikanbayeva Aizhan , Auyeshov Darkhan , Raiymbekov Yerkebulan
Published: May 2024

The process of transformation of the silicate components of the crystal lattice structure of chrysotile during its quantitative interaction with aqueous solutions containing various stoichiometrically required amounts of sulfuric acid (SRA H2SO4) calculated with respect to the magnesium content in the composition of chrysotile is investigated. It has been shown by IR spectroscopic, X-ray phase, thermal and chemical methods of investigation and analysis that, with quantitative interactions of chrysotile and sulfuric acid, first of all, the “brucite layer” of the molecular structural structure of chrysotile is exposed to acid at SRA H2SO4 = 0.1–0.3. As a result of ion exchange processes, acidic silanol (≡Si–O–H) or disilanol (=Si=(O–H)2) bonds are formed. These acid groups form one-dimensional silicate chains with transverse bridges (≡Si–O–Si≡), where the angles (Si–O–Si = 180 °C) straighten, which are recorded in the IR spectra in the region of characteristic absorption of 1220–1250 cm−1 silica. The association of the resulting acid groups into silicate chains, dimers, and trimers with transverse bridges, leads to the appearance of colloidal silica particles in the system, which cause some inhibition of the dissolution of layered magnesium hydrosilicate in sulfuric acid solutions containing H2SO4 ˃ 0.3 SRA.
Baicalin and Baicalein Enhance Cytotoxicity, Proapoptotic Activity, and Genotoxicity of Doxorubicin and Docetaxel in MCF-7 Breast Cancer Cells
Authors: Bernasinska-Slomczewska Joanna , Hikisz Pawel , Pieniazek Anna , Koceva-Chyla Aneta
Published: May 2024

Breast cancer is a major health concern and the leading cause of death among women worldwide. Standard treatment often involves surgery, radiotherapy, and chemotherapy, but these come with side effects and limitations. Researchers are exploring natural compounds like baicalin and baicalein, derived from the Scutellaria baicalensis plant, as potential complementary therapies. This study investigated the effects of baicalin and baicalein on the cytotoxic, proapoptotic, and genotoxic activity of doxorubicin and docetaxel, commonly used chemotherapeutic drugs for breast cancer. The analysis included breast cancer cells (MCF-7) and human endothelial cells (HUVEC-ST), to assess potential effects on healthy tissues. We have found that baicalin and baicalein demonstrated cytotoxicity towards both cell lines, with more potent effects observed in baicalein. Both flavonoids, baicalin (167 µmol/L) and baicalein (95 µmol/L), synergistically enhanced the cytotoxic, proapoptotic, and genotoxic activity of doxorubicin and docetaxel in breast cancer cells. In comparison, their effects on endothelial cells were mixed and depended on concentration and time. The results suggest that baicalin and baicalein might be promising complementary agents to improve the efficacy of doxorubicin and docetaxel anticancer activity. However, further research is needed to validate their safety and efficacy in clinical trials.