bluuebunny/crossref_metadata_2025 huggingface dataset:
Research status and trends of the diabetic cardiomyopathy in the past 10 years (2012–2021): A bibliometric analysis
Authors: Wang Sicheng , Tian Chuanxi , Gao Zezheng , Zhang Boxun , Zhao Linhua
Published: October 2022

Background

Diabetic cardiomyopathy is one of the most life-threatening diabetic complications. However, the previous studies only discuss a particular aspect or characteristic of DCM, the current state and trends were explored by limited research. We aimed to perform a systemically bibliometric study of DCM research progress status in the past decade, visualize the internal conceptual structure and potential associations, and further explore the prospective study trends.

Methods

Articles related to DCM published from January 2012 to December 2021 were collected in the Web of Science core collection (WoSCC) database on June 24, 2022. We exported all bibliographic records, including titles, abstracts, keywords, authorship, institutions, addresses, publishing sources, references, citation times, and year of publication. In addition, the journal Impact Factor and Hirsch index were obtained from the Journal Citation Report. We conducted the data screening, statistical analysis, and visualization via the Bibliometrix R package. VOS viewer software was employed to generate the collaboration network map among countries and institutions for better performance in visualization.

Results

In total, 1,887 original research articles from 2012 to 2021 were identified. The number of annual publications rapidly increased from 107 to 278, and a drastic increase in citation times was observed in 2017–2019. As for global contributions, the United States was the most influential country with the highest international collaboration, while China was the most productive country. Professor Cai Lu was the most prolific author. Shandong University published the most articles. Cardiovascular Diabetology journal released the most DCM-related articles. “Metabolic Stress-induced Activation of FoxO1 Triggers Diabetic Cardiomyopathy in Mice” Battiprolu PK et al., J Clin Invest, 2012. was the most top-cited article regarding local citations. The top three keywords in terms of frequency were apoptosis, oxidative stress, and fibrosis. The analysis of future topic trends indicated that “Forkhead box protein O1,” “Heart failure with preserved ejection fraction,” “Dapagliflozin,” “Thioredoxin,” “Mitochondria dysfunction,” “Glucose,” “Pyroptosis,” “Cardiac fibroblast” and “Long non-coding RNA” could be promising hotspots.

Conclusion

This study provides meaningful insights into DCM, which is expected to assist cardiologists and endocrinologists in exploring frontiers and future research directions in the domain through a refined and concise summary.
Levosimendan in acute heart failure with severely reduced kidney function, a propensity score matched registry study
Authors: Rottmann Felix Arne , Breiden Ann Katrin , Bemtgen Xavier , Welte Thomas , Supady Alexander , Wengenmayer Tobias , Staudacher Dawid Leander
Published: October 2022

Background

Patients with heart failure frequently present with kidney dysfunction. Kidney function is relevant, as prognosis declines with reduced kidney function and potentially beneficial drugs like levosimendan are contraindicated for missing safety data.

Materials and methods

A single-center retrospective registry study was conducted including all patients receiving levosimendan on a medical intensive care unit between January 2010 and December 2019. Exclusion criteria were a follow-up less than 24 h or missing glomerular filtration rate (eGFR) before administration of levosimendan. The first course of treatment was evaluated. Patients were stratified by eGFR before drug administration and the primary endpoint was a composite of supraventricular-, ventricular tachycardia and death within 7 days after administration of levosimendan. An internal control group was created by propensity score matching.

Results

A total of 794 patients receiving levosimendan were screened and 368 unique patients were included. Patients were predominantly male (73.6%) and median age was 63 years. Patients were divided by eGFR into three groups: >60 ml/min/1.73 m2 (n = 110), 60–30 ml/min/1.73 m2 (n = 130), and <30 ml/min/1.73 m2 (n = 128). ICU survival was significantly lower in patients with lower eGFR (69.1, 57.7, and 50.8%, respectively, p = 0.016) and patients with lower eGFR were significantly older and had significantly more comorbidities. The primary combined endpoint was reached in 61.8, 63.1, and 69.5% of subjects, respectively (p = 0.396). A multivariate logistic regression model suggested only age (p < 0.020), extracorporeal membrane oxygenation (p < 0.001) or renal replacement therapy (p = 0.028) during day 1–7 independently predict the primary endpoint while kidney function did not (p = 0.835). A propensity score matching of patients with eGFR < 30 and >30 ml/min/1.73 m2 based on these predictors of outcome confirmed the primary endpoint (p = 0.886).

Conclusion

The combined endpoint of supraventricular-, ventricular tachycardia and death within 7 days was reached at a similar rate in patients independently of kidney function. Prospective randomized trials are warranted to clarify if levosimendan can be used safely in severely reduced kidney function.
HRas and Myc synergistically induce cell cycle progression and apoptosis of murine cardiomyocytes
Authors: Boikova Aleksandra , Bywater Megan J. , Quaife-Ryan Gregory A. , Straube Jasmin , Thompson Lucy , Ascanelli Camilla , Littlewood Trevor D. , Evan Gerard I. , Hudson James E. , Wilson Catherine H.
Published: October 2022

Aim

Adult mammalian cardiomyocytes are incapable of significant proliferation, limiting regeneration after myocardial injury. Overexpression of the transcription factor Myc has been shown to drive proliferation in the adult mouse heart, but only when combined with Cyclin T1. As constitutive HRas activity has been shown to stabilise Cyclin T1 in vivo, we aimed to establish whether Myc and HRas could also act cooperatively to induce proliferation in adult mammalian cardiomyocytes in vivo.

Methods and results

Using a genetically modified mouse model, we confirmed that constitutive HRas activity (HRasG12V) increased Cyclin T1 expression. HRasG12V and constitutive Myc expression together co-operate to drive cell-cycle progression of adult mammalian cardiomyocytes. However, stimulation of endogenous cardiac proliferation by the ectopic expression of HRasG12V and Myc also induced cardiomyocyte death, while Myc and Cyclin T1 expression did not.

Conclusion

Co-expression of Cyclin T1 and Myc may be a therapeutically tractable approach for cardiomyocyte neo-genesis post injury, while cell death induced by HRasG12V and Myc expression likely limits this option as a regenerative therapeutic target.
IL6 gene polymorphism association with calcific aortic valve stenosis and influence on serum levels of interleukin-6
Authors: Junco-Vicente Alejandro , Solache-Berrocal Guillermo , del Río-García Álvaro , Rolle-Sóñora Valeria , Areces Sheila , Morís César , Martín María , Rodríguez Isabel
Published: October 2022

Aortic valve stenosis is the most frequent valve disease in developed countries and its prevalence will increase with population aging. There is still no pharmaceutical treatment nor biomarker to determine the susceptibility to develop aortic stenosis. Therefore, we analyzed the association of polymorphisms in risk loci with calcific aortic stenosis. Patients with aortic valve disease were genotyped for PALMD rs6702619, LPA rs10455872, and IL6 rs1800795 polymorphisms and circulating levels of interleukin-6 (IL-6) were measured. Calcium content of leaflets obtained in valve replacement surgeries was determined by micro-computed tomography. In the genotyping of 578 individuals, we found significant association between PALMD and IL6 polymorphisms and aortic stenosis in patients with tricuspid aortic valve, independently of other potentially confounding variables such as age and dyslipidemia. There was no association of these polymorphisms with valve calcium content, but this value correlated with the mean aortic pressure gradient (r = 0.44; P < 0.001). The CC genotype of IL6 polymorphism was associated with higher levels of serum IL-6 compared to other genotypes (23.5 vs. 10.5 pg/ml, respectively; P = 0.029). Therefore, patients carrying the CC genotype of IL6 rs1800795 polymorphism present higher levels of circulating IL-6 and this could contribute to the severity of the aortic valve stenosis. Our results agree with the identification of IL6 as a locus risk for stenosis and also with the intervention of this cytokine in aortic valve calcification. A more exhaustive follow-up of those patients carrying risk genotypes is therefore recommended.
Hemodynamic evaluation of endarterectomy and stenting treatments for carotid web
Authors: Ren Shuqi , Liu Qijia , Chen Zengsheng , Deng Xiaoyan , Sun Anqiang , Luan Jingyuan
Published: October 2022

Background and purpose

A carotid web is a thin, shelf-like luminal protrusion in the internal carotid artery that might cause carotid stenosis and stroke by inducing disturbed flow patterns, thrombosis, and abnormal biomechanical stimulus to the endothelial cells. This study simulated and evaluated how the two main treatments (endarterectomy and stenting) influence hemodynamic environments in the carotid artery and distal carotid siphon arteries, aiming to provide more references for the selection of clinical treatment.

Materials and methods

The carotid web, endarterectomy, and stenting models were reconstructed based on CT images. The blood flow simulations were conducted, and critical parameters related to thrombosis formation and artery remodeling, including swirling strength, wall shear stress (WSS), vortex Q-criterion, and oscillating shear index (OSI), were analyzed.

Results

In the model of the carotid web, obvious recirculation formed distal to the web, accompanied by lower velocity, lower WSS, higher relative resident time (RRT), and higher Q value. While in both two treatment models, the velocity increased and the Q value and RRT decreased at the carotid bifurcation. In addition, both treatments provide more kinetic energy to the distal carotid siphon artery, especially the stenting model.

Conclusion

The carotid web can significantly influence the flow environments in the carotid artery. Both endarterectomy and stenting treatments could significantly diminish the side effects of the web and are feasible choices for web patients in terms of hemodynamics. Besides, the treatments for the carotid web would also influence the flow patterns at the distal carotid siphon, especially for the stenting treatment. But more innovational designs are needed to make the minimally invasive stenting treatment more beneficial.
COVID-19 vaccine booster significantly decreases the risk of intensive care unit hospitalization in heart failure patients during the Omicron variant wave: A population-based study
Authors: Parenica Jiri , Benesova Klara , Radvan Martin , Sanca Ondrej , Hlasensky Jiri , Lokaj Petr , Ondrus Tomas , Helanova Katerina , Kala Petr , Dusek Ladislav , Jarkovsky Jiri
Published: October 2022

Background

Heart failure (HF) patients are at higher risk of severe coronavirus disease 2019 (COVID-19). The Omicron variant has many novel mutations including those in the spike protein, leading to questions about vaccine effectiveness. The aim of this analysis was to evaluate the effectiveness of the COVID-19 vaccine with or without a booster (i.e., after the third dose) during the Omicron variant wave.

Methods

Chronic heart failure patients in the Czech Republic were included in the analysis. COVID-19 infection was monitored from January 1st 2022 to March 31st 2022. The analysis was conducted on data collected in the National Health Information System. Vaccine effectiveness of vaccinated (with or without booster) vs. unvaccinated patients was analyzed for incidence of COVID-19, COVID-19-related hospitalizations, COVID-19 related intensive care unit admissions, and COVID-19 related mechanical ventilation/extracorporeal membrane oxygenation treatment.

Findings

From a total 165,453 HF patients in the Czech Republic, 9,728 contracted COVID-19 (22.9% of them not vaccinated, 23.2% vaccinated and 53.8% vaccinated and boosted). Risk of intensive care unit (ICU) hospitalization was 7.6% in the unvaccinated group, 4.8% in the vaccinated group and 2.9% in the boosted group. The calculated effectiveness of the COVID-19 vaccine in prevention of ICU hospitalization in the vaccinated group was 41.9 and 76.6% in the boosted group.

Interpretation

The results demonstrated moderate vaccine effectiveness in the prevention of severe COVID-19 in vaccinated but not boosted HF patients. Much stronger effectiveness was found in those who were vaccinated and boosted.
Multiple superconducting phases in heavy-fermion metals
Authors: Nica Emilian M. , Ran Sheng , Jiao Lin , Si Qimiao
Published: October 2022

Symmetry breaking beyond a global U(1) phase is the key signature of unconventional superconductors. As prototypical strongly correlated materials, heavy-fermion metals provide ideal platforms for realizing unconventional superconductivity. In this article, we review heavy-fermion superconductivity, with a focus on those materials with multiple superconducting phases. In this context, we highlight the role of orbital-selective (matrix) pairing functions, which are defined as matrices in the space of effective orbital degrees of freedom such as electronic orbitals and sublattices as well as equivalent descriptions in terms of intra- and inter-band pairing components in the band basis. The role of quantum criticality and the associated strange-metal physics in the development of unconventional superconductivity is emphasized throughout. We discuss in some detail the recent experimental observations and theoretical perspectives in the illustrative cases of UTe2, CeRh2As2, and CeCu2Si2, where applied magnetic fields or pressure induce a variety of superconducting phases. We close by providing a brief overview of overarching issues and implications for possible future directions.
Cardiovascular abnormalities and its correlation with genotypes of children with osteogenesis imperfecta
Authors: Zhao Dichen , Liu Yongtai , Liu Jidong , Hu Jing , Zhang Qian , Wang Ou , Jiang Yan , Xia Weibo , Xing Xiaoping , Li Mei
Published: October 2022

Background and objectives

Osteogenesis imperfecta (OI) is a rare disorder of abnormal production or modification of type I collagen, which is caused by mutations in COL1A1, COL1A2 or other genes. We investigate the cardiac abnormalities and its correlation with pathogenic mutations in OI children.

Methods

A cross-sectional comparative study was completed in a relatively large sample of OI children, who were matched in body surface area (BSA) with healthy controls. All echocardiography was performed by experienced cardiologists using Vivid 7 equipment (GE Medical Systems, Horton, Norway). The resting standard 12-lead electrocardiogram (ECG) were obtained in OI patients by FX-8600 machine. Skeletal phenotypes of OI patients were evaluated, including information of bone fractures, deformities, motility, and bone mineral density (BMD). Pathogenic mutations of OI were detected by a next-generation sequencing panel and confirmed by Sanger sequencing.

Results

A total of 69 OI children and 42 healthy children matched in BSA were enrolled. Abnormalities of echocardiography were found in 6 OI children, including enlarged left atrium (n=5), increased internal diameter of the left ventricle (n=1), who all carried the COL1A1 mutation. Mild regurgitation of mitral or tricuspid valves was observed in 26 OI patients. Abnormal ECG manifestations were found in 8 OI children, including deep Q wave, T wave change, premature ventricular complexes, short P-R interval, incomplete bundle branch block and high voltage of left ventricular. Compared with healthy controls, OI children had significant larger values in the main pulmonary artery (1.84 vs 1.60 cm, P < 0.01), left atrial diameter (2.58 vs 2.11 cm, P < 0.001), left ventricular internal dimension at end-diastolic (LVEDd) (3.85 vs 3.50 cm, P < 0.05) and lower left ventricular ejection fraction (LVEF) (68.40% vs 71.74%, P < 0.01). Moreover, OI patients with COL1A1 mutation tended to have greater main pulmonary artery, larger diameters of left atrial and LVEDd, and lower LVEF than healthy controls. COL1A1 mutation was correlated to dilated MPA (β = 1.557, P < 0.01), LAD (β = 3.915, P < 0.001), and LVEDd (β = 2.714, P < 0.01), and decreased LVEF (β = -3.249, P < 0.01).

Conclusions

Cardiovascular alterations were identified in OI children, including increased dimensions of the main pulmonary artery and left chamber, and low LVEF. The cardiovascular abnormalities seemed to be correlated to COL1A1 mutation and defects of type I collagen, which expanded our understandings of the cardiac phenotypes of OI children.
Preventing type 1 diabetes in late-stage pre-diabetic NOD mice with insulin: A central role for alum as adjuvant
Authors: Martens Pieter-Jan , Ellis Darcy , Bruggeman Ylke , Viaene Marijke , Laureys Jos , Teyton Luc , Mathieu Chantal , Gysemans Conny
Published: October 2022

Background

Restoration of immune tolerance to disease-relevant antigens is an appealing approach to prevent or arrest an organ-specific autoimmune disease like type 1 diabetes (T1D). Numerous studies have identified insulin as a key antigen of interest to use in such strategies, but to date, the success of these interventions in humans has been inconsistent. The efficacy of antigen-specific immunotherapy may be enhanced by optimising the dose, timing, and route of administration, and perhaps by the inclusion of adjuvants like alum. The aim of our study was to evaluate the effect of an insulin peptide vaccine formulated with alum to prevent T1D development in female non-obese diabetic (NOD) mice when administered during late-stage pre-diabetes.

Methods

Starting at 10 weeks of age, female NOD mice received four weekly subcutaneous injections of an insulin B:8-24 (InsB:8-24) peptide with (Ins+alum) or without Imject® alum (Ins) as adjuvant. Diabetes incidence was assessed for up to 30 weeks of age. Insulin autoantibodies and C-peptide concentrations were measured in plasma and flow cytometric analysis was performed on pancreatic-draining lymph nodes (PLN) and pancreas using an InsB:12-20-reactive tetramer.

Results

InsB:8-24 peptide formulated in alum reduced diabetes incidence (39%), compared to mice receiving the InsB:8-24 peptide without alum (71%, P < 0.05), mice receiving alum alone (76%, P < 0.01), or mice left untreated (70%, P < 0.01). This was accompanied by reduced insulitis severity, and preservation of C-peptide. Ins+alum was associated with reduced frequencies of pathogenic effector memory CD4+ and CD8+ T cells in the pancreas and increased frequencies of insulin-reactive FoxP3+ Tregs in the PLN. Of interest, insulin-reactive Tregs were enriched amongst populations of Tregs expressing markers indicative of stable FoxP3 expression and enhanced suppressive function.

Conclusion

An InsB:8-24 peptide vaccine prevented the onset of T1D in late-stage pre-diabetic NOD mice, but only when formulated in alum. These findings support the use of alum as adjuvant to optimise the efficacy of antigen-specific immunotherapy in future trials.
HDAC11, an emerging therapeutic target for metabolic disorders
Authors: Chen Huizhen , Xie Chunguang , Chen Qiu , Zhuang Shougang
Published: October 2022

Histone deacetylase 11 (HDAC11) is the only member of the class IV HDAC, and the latest member identified. It is highly expressed in brain, heart, kidney and some other organs, and located in mitochondria, cytoplasm and nuclei, depending on the tissue and cell types. Although studies in HDAC11 total knockout mice suggest its dispensable features for tissue development and life, it participates in diverse pathophysiological processes, such as DNA replication, tumor growth, immune regulation, oxidant stress injury and neurological function of cocaine. Recent studies have shown that HDAC11 is also critically involved in the pathogenesis of some metabolic diseases, including obesity, diabetes and complications of diabetes. In this review, we summarize the recent progress on the role and mechanism of HDAC11 in the regulation of metabolic disorders, with the focus on its regulation on adipogenesis, lipid metabolism, metabolic inflammation, glucose tolerance, immune responses and energy consumption. We also discuss the property and selectivity of HDAC11 inhibitors and their applications in a variety of in vitro and in vivo models of metabolic disorders. Given that pharmacological and genetic inhibition of HDAC11 exerts a beneficial effect on various metabolic disorders, HDAC11 may be a potential therapeutic target to treat chronic metabolic diseases.
Cone-structured seven-level boost inverter topology for improvising power quality using online monitoring controller scheme for DSTATCOM application
Authors: Selvakumar K. , Palanisamy R. , Kannan M. , Selvarajan S. , Selim Ali , Kotb Hossam , Bajaj Mohit , Kamel Salah
Published: October 2022

In this article, a seven-level triple-time voltage-boosting topology (8S7L-TTB) is proposed, which has eight switches as the minimum. This topology is used as DSTATCOM to eliminate power-quality issues. In a three-phase four-wire distribution system, specific unpredictable issues have emerged through the increase of unbalanced linear and non-linear loads, which has caused various drawbacks such as voltage imbalance, poor voltage regulation, increased reactive components, and harmonics generation, through which the life period of the system has been minimized, undesirable heating has been produced, and the RMS voltage has been reduced. Hence, it is highly essential to eliminate the issues as mentioned earlier. In this research, a PV-based DSTATCOM is introduced for online-monitoring adaptive Chebyshev neural network controller with triple-boost inverter topology. The three-phase system’s D-Q components, which have been continuously extracted under instant-loading conditions, and the reference magnitude, have been compared through the proposed controller. The error signal is received from the adaptive Chebyshev neural network controller, through which the proposed inverter-switching devices are triggered with multi-carrier pulse width-modulation technique are used to compute the THD of 2.79%. Furthermore, this proposed seven-level inverter and controller have solved the aforementioned problems and maintained the floating capacitor’s voltage nearly as similar as the source voltage in different loading conditions to ensure the efficiency of the system is at 96.82%. To ensure its suitability in real-time, the proposed controller is simulated with MATLAB software and validated through the downscale experimental setup and the results are observed.
Ambient non-methane hydrocarbons and their contribution to ozone formation potential in a super coal chemical industry in China’s Energy Golden Triangle
Authors: Wang Jinxiang , Ma Jianmin , Liu Panliang
Published: October 2022

Ambient non-methane hydrocarbons (NMHCs) were investigated at Shenhua coal chemical industrial park (SH), and Baofeng coal chemical industrial park (BF) in Ningdong Energy and Chemical Industrial Base (NECIB) in China’s Energy Golden Triangle (EGT). Ambient air samples were collected using pre-evacuated 2-L electro-polished stainless steel canisters at SH and BF from 9:00 a.m. to 9:30 a.m. (UTC+8) from 22 to 31 December 2016. Fifty-seven NMHCs were analyzed using gas chromatography-mass selective detector/flame ionization detector. The average NMHCs mixing ratios were 49.05 ± 44.37 ppbv in SH, and 39.31 ± 18.77 ppbv in BF. Overall, alkanes took up the largest proportion (＞60%), followed by alkenes, acetylene, and aromatics. The propylene-equivalent (Prop-Equiv) concentration and the ozone formation potential (OFP) of NMHCs were calculated to estimate their chemical reactivities. Alkenes played a predominant role in NMHCs reactivity, among which propylene and ethylene were the largest contributors. OFP values show that alkenes and acetylene were the largest contributors (60%) to measured total NMHCs. Ethylene, propylene, m/p-xylene, n-butane, 1-butene, propane and acetylene were the major precursors in ground-level ozone formation in this region, which accounted for 66% and 62% of the total ozone formed by NMHCs at BF and SH, respectively. This study identified that industrial activities were the primary sources of NMHCs, confirmed by the high ratios of benzene to toluene (B/T = 2.23). Therefore, these organic pollutants should be monitored further based on their high toxicities.
Responses of ozone concentrations to the synergistic control of NOx and VOCs emissions in the Chengdu metropolitan area
Authors: Du Xiaohui , Tang Wei , Zhang Zhongzhi , Chen Junhui , Han Li , Yu Yang , Li Yang , Li Yingjie , Li Hong , Chai Fahe , Meng Fan
Published: October 2022

Simulations of 108 emission reduction scenarios for NOx and VOCs using Comprehensive Air Quality Model with Extensions (CAMx) were conducted for eight cities in the Chengdu metropolitan area (CMA). The isopleth diagrams were drawn to explore the responses and differences of ozone (O3) concentrations to NOx and VOCs emission changes under Chengdu, CMA and Sichuan Province emission reduction scenarios. The results show that the O3-sensitive regimes of eight cities may change under different emission reduction scenarios. Under Chengdu emission reduction scenario, the Chengdu city is in the transition regime and O3 formation will shift from transition to VOC-limited when the VOCs emissions decreased by 50%, and the decreases in O3 concentrations caused by VOCs emission reductions are small. For the CMA and Sichuan Province emission reduction scenarios, all cities are NOx-limited in the baseline cases and with at least a 66% and a 77% reduction in NOx emissions, respectively, the daily maximum 8-h average O3 (MDA8) can attain the O3 standard (160 μg m−3). Although reductions in VOCs emissions can also lessen the O3 concentration, the effectiveness is relatively small. The changes in O3 concentrations under different VOCs to NOx emission reduction ratios indicate that all cities achieve a relatively high O3 concentration decrement with low VOCs to NOx emission reduction ratios and that the decreasing O3 concentrations caused by non-local emission reductions are much higher than those achieved by local emission reductions. In addition, the decreases in O3 concentrations in Chengdu are quite close when the total NOx and VOCs emissions reduction percentages are less than 30% under the CMA and Sichuan emission reduction scenarios.
Real-world fuel-based and tillage area-based emission factors of agricultural machines during different tillage processes
Authors: Shen Xianbao , Yu Wenhan , Yao Zhiliang , Kong Lei , Wu Bobo , Xuan Kaijie , Cao Xinyue , Li Xin , Zhang Hanyu , Hao Xuewei , Zhou Qi
Published: October 2022

Emissions of agricultural machines during tillage processes played an important role in severe seasonal pollution events in agricultural areas in China and cannot be ignored. In this study, the CO, NOX, HC and PM2.5 emissions of agricultural machines during real-world tillage processes were tested using a portable emission measurement system (PEMS), and their fuel-based and tillage area-based emission factors were calculated. The CO, NOX, HC and PM2.5 emissions were influenced by emission standards, engine rated power, tillage processes and crops. Only the CO, HC and PM2.5 fuel-based emission factors were reduced from China 0 to China II. For China III agricultural machines, the fuel-based emission factors were higher during plowing and tilling than during harvesting. The tillage area-based CO, NOX, HC and PM2.5 emission factors of corn tillage process were 11.85 ± 8.30, 53.21 ± 48.80, 3.46 ± 3.14 and 1.64 ± 1.33 kg/km2, respectively. The tillage area-based CO, NOX, HC and PM2.5 emission factors of wheat tillage process were 19.69 ± 21.50, 79.98 ± 63.22, 3.90 ± 2.96 and 1.61 ± 2.43 kg/km2, respectively. The tillage area-based emission factors of China III agricultural machines during plowing and tilling were higher than those during harvesting. The fuel consumption per unit tillage area can be used to provide a reference for the interconversion of the two emission factors in future studies. By comparing the fuel-based emission factors in this study with those in the Guidelines and other studies, we observed that the CO, HC and PM2.5 emissions of agricultural machines with corresponding emission standards may be overestimated and the NOX emissions may be underestimated in areas where wheat and corn are mainly grown. Moreover, the pollutant emissions of agricultural machines were regionally different. These results could help elucidate the pollution contribution of agricultural machines in China.
Does environmental regulation promote green merger and acquisition? Evidence from the implementation of China’s newly revised Environmental Protection Law
Authors: Han Zhijie , Wang Yuwei , Pang Jing
Published: October 2022

Green merger and acquisition (Green M&A) is one of the ways of corporate environmental investment, which is vital for their green transformation and sustainable development. With the implementation of the newly revisedEnvironmental Protection Lawin 2015, this paper investigates the impact of environmental regulation on corporate green M&A using the Difference-in-Difference method with a sample of Chinese listed companies from 2007 to 2020. We found that firms’ green M&A increases significantly after the implementation of the new Environmental Protection Law. The promotion effect is more pronounced when the firm is state-owned or faces lower financing constraints. Further analysis reveals that green M&A significantly reduces firms’ environmental management costs, enhances green innovation, and has no effect on market performance. This result confirms that after the implementation of the newEnvironmental Protection Law, companies engage in green M&A for cost and innovation motives rather than market motives.
Alleviating impacts of climate change on fishing communities using weather information to improve fishers’ resilience
Authors: Okeke-Ogbuafor Nwamaka , Taylor Andrea , Dougill Andrew , Stead Selina , Gray Tim
Published: October 2022

This study contributes new knowledge in evaluating actions aimed at alleviating impacts of climate change on small-scale fishers and enhancing resilience in their households in West Africa. Evidence of the damage caused by climate change to the artisanal fisheries sector in West African countries is accumulating. Current measures in place for artisanal fishers to adapt to these changes include broad long-term pro-poor strategies designed to manage the persistent problem of overfishing and declining fish stocks. However, one immediate coping strategy is beginning to emerge, the more active use of reliable weather information. Based on 80 semi-structured interviews conducted in Senegal, Ghana, and Nigeria between 2021 and 2022, this study investigates claims that the use of weather information (WI) is helping West African artisanal fishers and those involved in secondary fishery activities to build more climate-resilient household income and food security. Unlike the long-term measures for mitigating the impact of climate change, results from the study show that by assessing the risk, their marine capture activities using weather information, fishers are immediately benefitting. Using the diffusion of the innovation theory to investigate the pattern of fishers’ adoption and usage of weather information, we found that Senegalese marine artisanal fishers can be classified as “Early Adopters” of this innovation. However, this is not the case with inland fishers who remain skeptical and will only use weather information if they can ascertain its reliability. West Africa’s inland fisheries sector is often neglected in climate change strategies: there is a lack of coordinated action to understand the weather information needs of these vulnerable fishers in order to coassess and codevelop bespoke weather products that offer benefits to them. However, West Africa’s fisheries, especially those inland, are too important to ignore if the United Nations Sustainable Development Goals (UNSDGs), including no poverty and zero hunger, are to be achieved. To help this sector fully benefit from the use of weather information, this study recommends detailed research into the weather information needs of these fishers and user-friendly ways to engage with the fishers to transmit the information.
Rice farmers’ perceptions about temperature and rainfall variations, respective adaptation measures, and determinants: Implications for sustainable farming systems
Authors: Khan Nasir Abbas , Shah Ashfaq Ahmad , Chowdhury Ataharul , Tariq Muhammad Atiq Ur Rehman , Khanal Uttam
Published: October 2022

In Pakistan, climate change is adversely affecting agricultural production and undermining the food security and subsistence of millions of farm households. Farmers’ understanding of climate change and their adaptation strategies can serve as a useful step to help minimize climate risks. This study explores farmers’ perception of and adaptation strategies to climate change and their determinants in the rice-growing zone of Punjab province, as this region of the country is highly vulnerable to climate change impacts. The multistage stratified-random sampling method was used to select 480 farmers from the four rice districts of the region, and data were collected using a structured questionnaire. Logistic regression and contingency tables are used to analyze the determinants of farmers’ adopted strategies and adaptation extent (number of adopted strategies). Results show that farmers perceived significant changes in the climate, including the rise in average summer and winter temperatures and the decline in overall precipitation. The study further found that farmers’ adopted adaptation strategies include supplementary irrigation, adjustments in rice cultivation dates, crop diversification, use of climate-smart varieties, better fertilizer management, and farm resizing. Logit model showed that farmers’ age, primary occupation, income, landholding, access to irrigation, credit, climate information, and farm advisory appeared to be the significant determinants of their adaptation decision. The adaptation extent strongly correlates with farmers’ education and access to climate information and credit services. Based on these findings, this study suggests the relevant institutions improve farmers’ access to irrigation water, credit, farm advisory, and climate information to improve their adaptation extent and hence resilience of the rice-farming system.
Beyond functional diversity: The importance of trophic position to understanding functional processes in community evolution
Authors: Banker Roxanne M. W. , Dineen Ashley A. , Sorman Melanie G. , Tyler Carrie L. , Roopnarine Peter D.
Published: October 2022

Ecosystem structure—that is the species present, the functions they represent, and how those functions interact—is an important determinant of community stability. This in turn affects how ecosystems respond to natural and anthropogenic crises, and whether species or the ecological functions that they represent are able to persist. Here we use fossil data from museum collections, literature, and the Paleobiology Database to reconstruct trophic networks of Tethyan paleocommunities from the Anisian and Carnian (Triassic), Bathonian (Jurassic), and Aptian (Cretaceous) stages, and compare these to a previously reconstructed trophic network from a modern Jamaican reef community. We generated model food webs consistent with functional structure and taxon richnesses of communities, and compared distributions of guild level parameters among communities, to assess the effect of the Mesozoic Marine Revolution on ecosystem dynamics. We found that the trophic space of communities expanded from the Anisian to the Aptian, but this pattern was not monotonic. We also found that trophic position for a given guild was subject to variation depending on what other guilds were present in that stage. The Bathonian showed the lowest degree of trophic omnivory by top consumers among all Mesozoic networks, and was dominated by longer food chains. In contrast, the Aptian network displayed a greater degree of short food chains and trophic omnivory that we attribute to the presence of large predatory guilds, such as sharks and bony fish. Interestingly, the modern Jamaican community appeared to have a higher proportion of long chains, as was the case in the Bathonian. Overall, results indicate that trophic structure is highly dependent on the taxa and ecological functions present, primary production experienced by the community, and activity of top consumers. Results from this study point to a need to better understand trophic position when planning restoration activities because a community may be so altered by human activity that restoring a species or its interactions may no longer be possible, and alternatives must be considered to restore an important function. Further work may also focus on elucidating the precise roles of top consumers in moderating network structure and community stability.
Computational genomics insights into cold acclimation in wheat
Authors: Pan Youlian , Li Yifeng , Liu Ziying , Zou Jitao , Li Qiang
Published: October 2022

Development of cold acclimation in crops involves transcriptomic reprograming, metabolic shift, and physiological changes. Cold responses in transcriptome and lipid metabolism has been examined in separate studies for various crops. In this study, integrated computational approaches was employed to investigate the transcriptomics and lipidomics data associated with cold acclimation and vernalization in four wheat genotypes of distinct cold tolerance. Differential expression was investigated between cold treated and control samples and between the winter-habit and spring-habit wheat genotypes. Collectively, 12,676 differentially expressed genes (DEGs) were identified. Principal component analysis of these DEGs indicated that the first, second, and third principal components (PC1, PC2, and PC3) explained the variance in cold treatment, vernalization and cold hardiness, respectively. Differential expression feature extraction (DEFE) analysis revealed that the winter-habit wheat genotype Norstar had high number of unique DEGs (1884 up and 672 down) and 63 winter-habit genes, which were clearly distinctive from the 64 spring-habit genes based on PC1, PC2 and PC3. Correlation analysis revealed 64 cold hardy genes and 39 anti-hardy genes. Cold acclimation encompasses a wide spectrum of biological processes and the involved genes work cohesively as revealed through network propagation and collective association strength of local subnetworks. Integration of transcriptomics and lipidomics data revealed that the winter-habit genes, such as COR413-TM1, CIPKs and MYB20, together with the phosphatidylglycerol lipids, PG(34:3) and PG(36:6), played a pivotal role in cold acclimation and coordinated cohesively associated subnetworks to confer cold tolerance.
Transcriptome analysis revealed potential genes involved in thermogenesis in muscle tissue in cold-exposed lambs
Authors: Ji Kaixi , Jiao Dan , Yang Guo , Degen Abraham Allan , Zhou Jianwei , Liu Hu , Wang Wenqiang , Cong Haitao
Published: October 2022

Cold tolerance is an important trait for sheep raised at high altitudes. Muscle tissue, comprising 30–40% of the total body mass, produces heat during cold exposure. However, little is known about the genetic mechanisms of this tissue and its role in thermogenesis in lambs. We examined genes in skeletal muscle tissue in a cold-adapted sheep breed, Altay, and a cold-intolerant sheep breed, Hu, when exposed to low air temperature. Three ewe-lambs of each breed were maintained at −5°C and three ewe-lambs of each breed were maintained at 20°C. After cold exposure for 25 days, the longissimus dorsi of each lamb was collected, and transcriptome profiles were sequenced and analyzed. The results of RNA-seq showed that the average reads among the four groups were 11.0 Gbase. The genome mapping rate averaged 88.1% and the gene mapping rate averaged 82.5%. The analysis of differentially expressed genes (DEGs) indicated that the peroxisome proliferator-activated receptors (PPAR), cAMP, and calcium signaling pathways and muscle contraction in muscle tissue were linked to thermogenesis in cold-exposed lambs. Furthermore, PCK1 (phosphoenolpyruvate carboxykinase1) increased glyceroneogenesis in cold-exposed Altay lambs, and APOC3 (apolipoprotein C3), LPL (lipoprotein lipase), and FABP4 (fatty acid binding protein 4, adipocyte) were involved in the intake and transport of free fatty acids. In Hu sheep, cAMP biosynthesis from ATP hydrolysis was regulated by ADCY10 (adenylate cyclase) and ADORA2a (adenosine A2a receptor). Skeletal muscle contraction was regulated by MYL2 (myosin light chain 2). In conclusion, cold exposure altered the expression level of genes involved in heat production in muscle tissue. Some potential mechanisms were revealed, including calcium ion transport in the calcium signaling pathway, fatty acid metabolism in the PPAR signaling pathway, and cAMP biosynthesis in the cAMP signaling pathway. This study implied that skeletal muscle plays an important role in thermoregulation in lambs.
Identifying lncRNA–disease association based on GAT multiple-operator aggregation and inductive matrix completion
Authors: Zhang Yi , Wang Yu , Li Xin , Liu Yarong , Chen Min
Published: October 2022

Computable models as a fundamental candidate for traditional biological experiments have been applied in inferring lncRNA–disease association (LDA) for many years, without time-consuming and laborious limitations. However, sparsity inherently existing in known heterogeneous bio-data is an obstacle to computable models to improve prediction accuracy further. Therefore, a new computational model composed of multiple mechanisms for lncRNA–disease association (MM-LDA) prediction was proposed, based on the fusion of the graph attention network (GAT) and inductive matrix completion (IMC). MM-LDA has two key steps to improve prediction accuracy: first, a multiple-operator aggregation was designed in the n-heads attention mechanism of the GAT. With this step, features of lncRNA nodes and disease nodes were enhanced. Second, IMC was introduced into the enhanced node features obtained in the first step, and then the LDA network was reconstructed to solve the cold start problem when data deficiency of the entire row or column happened in a known association matrix. Our MM-LDA achieved the following progress: first, using the Adam optimizer that adaptively adjusted the model learning rate could increase the convergent speed and not fall into local optima as well. Second, more excellent predictive ability was achieved against other similar models (with an AUC value of 0.9395 and an AUPR value of 0.8057 obtained from 5-fold cross-validation). Third, a 6.45% lower time cost was consumed against the advanced model GAMCLDA. In short, our MM-LDA achieved a more comprehensive prediction performance in terms of prediction accuracy and time cost.
Calreticulin as a prognostic biomarker and correlated with immune infiltrate in kidney renal clear cell carcinoma
Authors: Sun Ming , Qi Shanshan , Wu Min , Xia Wei , Xiong Hao
Published: October 2022

Background: Calreticulin (CALR) has been investigated in several malignant diseases and is associated with immune-cell infiltration. However, the prognostic value of CALR in kidney renal clear cell carcinoma (KIRC) is still unknown.

Methods: Based on the computational analysis, data from 530 KIRC cases and 72 normal kidney samples from The Cancer Genome Atlas (TGCA-KIRC) database were analyzed in this study. The expression of CALR mRNA in pan-cancer and immune infiltrates was analyzed using the Tumor Immune Estimation Resource (TIMER) database. The CALR protein expression was obtained from the UALCAN and Human Protein Atlas (HPA) databases. Survival, functional, and statistical analyses were conducted using R software.

Results: The CALR expression was higher in KIRC cases than in normal kidneys. A high CALR expression was correlated with TNM stage, pathological stage, and histological grade. Kaplan–Meier survival analysis showed that a high CALR expression was associated with poor overall survival, disease-specific survival, and progression-free interval. Gene set enrichment analysis (GSEA) indicated that CALR was enriched in IL-6 and IL-2 signaling, interferon signaling, TNF signaling, inflammatory response, apoptosis, and the p53 pathway. CALR is correlated with immune-infiltrating cells. A significant correlation was observed between CALR expression and immunomodulators.

Conclusion: We identified CALR as a prognostic biomarker of KIRC. Meanwhile, the CALR expression associated with immune infiltration indicated that CALR might be a potential immunotherapy target for patients with KIRC.
Inhibition of ABL1 by tyrosine kinase inhibitors leads to a downregulation of MLH1 by Hsp70-mediated lysosomal protein degradation
Authors: Daniels Hannah G. , Knicely Breanna G. , Miller Anna Kristin , Thompson Ana , Plattner Rina , Goellner Eva M.
Published: October 2022

The DNA mismatch repair (MMR) pathway and its regulation are critical for genomic stability. Mismatch repair (MMR) follows replication and repairs misincorporated bases and small insertions or deletions that are not recognized and removed by the proofreading polymerase. Cells deficient in MMR exhibit an increased overall mutation rate and increased expansion and contraction of short repeat sequences in the genome termed microsatellite instability (MSI). MSI is often a clinical measure of genome stability in tumors and is used to determine the course of treatment. MMR is also critical for inducing apoptosis after alkylation damage from environmental agents or DNA-damaging chemotherapy. MLH1 is essential for MMR, and loss or mutation of MLH1 leads to defective MMR, increased mutation frequency, and MSI. In this study, we report that tyrosine kinase inhibitors, imatinib and nilotinib, lead to decreased MLH1 protein expression but not decreased MLH1 mRNA levels. Of the seven cellular targets of Imatinib and nilotinib, we show that silencing of ABL1 also reduces MLH1 protein expression. Treatment with tyrosine kinase inhibitors or silencing of ABL1 results in decreased apoptosis after treatment with alkylating agents, suggesting the level of MLH1 reduction is sufficient to disrupt MMR function. We also report MLH1 is tyrosine phosphorylated by ABL1. We demonstrate that MLH1 downregulation by ABL1 knockdown or inhibition requires chaperone protein Hsp70 and that MLH1 degradation can be abolished with the lysosomal inhibitor bafilomycin. Taken together, we propose that ABL1 prevents MLH1 from being targeted for degradation by the chaperone Hsp70 and that in the absence of ABL1 activity at least a portion of MLH1 is degraded through the lysosome. This study represents an advance in understanding MMR pathway regulation and has important clinical implications as MMR status is used in the clinic to inform patient treatment, including the use of immunotherapy.