bluuebunny/crossref_metadata_2025 huggingface dataset:
The Association between TIF1 Family Members and Cancer Stemness in Solid Tumors
Authors: Czerwinska Patrycja , Wlodarczyk Nikola Agata , Jaworska Anna Maria , Mackiewicz Andrzej Adam
Published: March 2021

Cancer progression entails a gradual loss of a differentiated phenotype in parallel with the acquisition of stem cell-like features. Cancer de-differentiation and the acquisition of stemness features are mediated by the transcriptional and epigenetic dysregulation of cancer cells. Here, using publicly available data from The Cancer Genome Atlas (TCGA) and Gene Expression Omnibus (GEO) databases and harnessing several bioinformatic tools, we characterized the association between Transcriptional Intermediary Factor 1 (TIF1) family members and cancer stemness in 27 distinct types of solid tumors. We aimed to define the prognostic value for TIF1 members in predicting a stem cell-like cancer phenotype and patient outcome. Our results demonstrate that high expression of only one member of the TIF1 family, namely TIF1β (also known as Tripartite Motif protein 28, TRIM28) is consequently associated with enriched cancer stemness across the tested solid tumor types, resulting in a worse prognosis for cancer patients. TRIM28 is highly expressed in higher grade tumors that exhibit stem cell-like traits. In contrast to other TIF1 members, only TIF1β/TRIM28-associated gene expression profiles were robustly enriched with stemness markers regardless of the tumor type. Our work demonstrates that TIF1 family members exhibit distinct expression patterns in stem cell-like tumors, despite their structural and functional similarity. Among other TIF1 members, only TRIM28 might serve as a marker of cancer stemness features.
Breast Cancer Patient Prognosis Is Determined by the Interplay between TP53 Mutation and Alternative Transcript Expression: Insights from TP53 Long Amplicon Digital PCR Assays
Authors: Lasham Annette , Knowlton Nicholas , Mehta Sunali Y. , Braithwaite Antony W. , Print Cristin G.
Published: March 2021

The TP53 gene locus is capable of producing multiple RNA transcripts encoding the different p53 protein isoforms. We recently described multiplex long amplicon droplet digital PCR (ddPCR) assays to quantify seven of eight TP53 reference transcripts in human tumors. Here, we describe a new long amplicon ddPCR assay to quantify expression of the eighth TP53 reference transcript encoding ∆40p53α. We then applied these assays, alongside DNA sequencing of the TP53 gene locus, to tumors from a cohort of New Zealand (NZ) breast cancer patients. We found a high prevalence of mutations at TP53 splice sites in the NZ breast cancer cohort. Mutations at TP53 intron 4 splice sites were associated with overexpression of ∆133TP53 transcripts. Cox proportional hazards survival analysis showed that interplay between TP53 mutation status and expression of TP53 transcript variants was significantly associated with patient outcome, over and above standard clinical and pathological information. In particular, patients with no TP53 mutation and a low ratio of TP53 transcripts t2 to t1, which derive from alternative intron 1 acceptor splice sites, had a remarkably good outcome. We suggest that this type of analysis, integrating mutation and transcript expression, provides a step-change in our understanding of TP53 in cancer.
Autoimmune Complications in Hematologic Neoplasms
Authors: Barcellini Wilma , Giannotta Juri Alessandro , Fattizzo Bruno
Published: March 2021

Autoimmune cytopenias (AICy) and autoimmune diseases (AID) can complicate both lymphoid and myeloid neoplasms, and often represent a diagnostic and therapeutic challenge. While autoimmune hemolytic anemia (AIHA) and immune thrombocytopenia (ITP) are well known, other rarer AICy (autoimmune neutropenia, aplastic anemia, and pure red cell aplasia) and AID (systemic lupus erythematosus, rheumatoid arthritis, vasculitis, thyroiditis, and others) are poorly recognized. This review analyses the available literature of the last 30 years regarding the occurrence of AICy/AID in different onco-hematologic conditions. The latter include chronic lymphocytic leukemia (CLL), lymphomas, multiple myeloma, myelodysplastic syndromes (MDS), chronic myelomonocytic leukemia (CMML), myeloproliferative neoplasms, and acute leukemias. On the whole, AICy are observed in up to 10% of CLL and with higher frequencies in certain subtypes of non-Hodgkin lymphoma, whilst they occur in less than 1% of low-risk MDS and CMML. AID are described in up to 30% of myeloid and lymphoid patients, including immune-mediated hemostatic disorders (acquired hemophilia, thrombotic thrombocytopenic purpura, and anti-phospholipid syndrome) that may be severe and fatal. Additionally, AICy/AID are found in about 10% of patients receiving hematopoietic stem cell transplant or treatment with new checkpoint inhibitors. Besides the diagnostic difficulties, these AICy/AID may complicate the clinical management of already immunocompromised patients.
Prospective Validation of Indocyanine Green Lymphangiography Staging of Breast Cancer-Related Lymphedema
Authors: Jørgensen Mads Gustaf , Toyserkani Navid Mohamadpour , Hansen Frederik Christopher Gulmark , Thomsen Jørn Bo , Sørensen Jens Ahm
Published: March 2021

Indocyanine green lymphangiography (ICG-L) allows real-time investigation of lymphatics. Plastic surgeons performing lymphatic reconstruction use the ICG-L for patient selection and stratification using the MD Anderson (MDA) and the Arm Dermal Backflow (ADB) grading systems. However, the applicability of ICG-L in evaluating breast cancer-related lymphedema (BCRL) is sparse and not well established. This study comprehensively examines the usability of ICG-L in the assessment of BCRL. We prospectively performed ICG-L in 237 BCRL patients between January 2019 and February 2020. The aim of this study was to assess the interrater and intrarater agreement and interscale consensus of ratings made using the MDA and ADB scales. Three independent raters performed a total of 2607 ICG-L assessments. The ICG-L stage for each grading system was correlated to the lymphedema volume to assess the agreement between the ICG-L stage and clinical severity. The interrater agreement was near perfect for the MDA scale (kappa 0.82–0.90) and the ADB scale (kappa 0.80–0.91). Similarly, we found a near-perfect intrarater agreement for the MDA scale (kappa 0.84–0.94) and the ADB scale (kappa 0.88–0.89). The agreement between the MDA and the ADB scales was substantial (kappa 0.65–0.68); however, the ADB scale systematically overestimated lower ICG-L stages compared to the MDA scale. The volume of lymphedema correlated slightly with MDA stage (Spearmans rho = 0.44, p < 0.001) and ADB stage (rs = 0.35, p < 0.001). No serious adverse events occurred. The staging of BCRL with ICG-L is reliable, safe, and provides unique disease information unobtainable with clinical measurements alone. The MDA scale seems to provide better disease stratification compared to the ADB scale.
Time to Move to the Single-Cell Level: Applications of Single-Cell Multi-Omics to Hematological Malignancies and Waldenström’s Macroglobulinemia—A Particularly Heterogeneous Lymphoma
Authors: García-Sanz Ramón , Jiménez Cristina
Published: March 2021

Single-cell sequencing techniques have become a powerful tool for characterizing intra-tumor heterogeneity, which has been reflected in the increasing number of studies carried out and reported. We have rigorously reviewed and compiled the information about these techniques inasmuch as they are relative to the area of hematology to provide a practical view of their potential applications. Studies show how single-cell multi-omics can overcome the limitations of bulk sequencing and be applied at all stages of tumor development, giving insights into the origin and pathogenesis of the tumors, the clonal architecture and evolution, or the mechanisms of therapy resistance. Information at the single-cell level may help resolve questions related to intra-tumor heterogeneity that have not been previously explained by other techniques. With that in mind, we review the existing knowledge about a heterogeneous lymphoma called Waldenström’s macroglobulinemia and discuss how single-cell studies may help elucidate the underlying causes of this heterogeneity.
Modulation of Gene Expression in a Sterile Atopic Dermatitis Model and Inhibition of Staphylococcus aureus Adhesion by Fucoidan
Authors: Park Ah Young , Bourtembourg Maureen , Chrétien Aline , Hubaux Roland , Lancelot Céline , Salmon Michel , Fitton J. Helen
Published: March 2021

Atopic dermatitis is a multifactorial pathology that includes perturbations of gene expression and increased adhesion of Staphylococcus aureus. Fucoidans are seaweed-derived sulfated fucose-rich polysaccharides that are known to be anti-inflammatory and may inhibit adhesion of pathogens. Fucoidan was assessed for effects on gene expression of an in vitro 3D model of atopic dermatitis. It was also assessed for inhibitory effects on the adhesion of bacteria onto 3D reconstructed skin. Fucoidan significantly altered gene expression in the atopic dermatitis model, and there was a trend to reduce periostin levels. Fucoidan significantly inhibited the adhesion of Staphylococcus aureus and Cutibacterium acnes but did not affect the adhesion of Staphylococcus epidermidis. Fucoidan may be a useful topical agent to assist in the management of atopic dermatitis.
Optimal Design of A 12-Slot/10-Pole Six-Phase SPM Machine with Different Winding Layouts for Integrated On-Board EV Battery Charging
Authors: Hemeida Ahmed , Metwly Mohamed Y. , Abdel-Khalik Ayman S. , Ahmed Shehab
Published: March 2021

The transition to electric vehicles (EVs) has received global support as initiatives and legislation are introduced in support of a zero-emissions future envisaged for transportation. Integrated on-board battery chargers (OBCs), which exploit the EV drivetrain elements into the charging process, are considered an elegant solution to achieve this widespread adoption of EVs. Surface-mounted permanent-magnet (SPM) machines have emerged as plausible candidates for EV traction due to their nonsalient characteristics and ease of manufacturing. From an electric machine design perspective, parasitic torque ripple and core losses need to be minimized in integrated OBCs during both propulsion and charging modes. The optimal design of EV propulsion motors has been extensively presented in the literature; however, the performance of the optimal traction machine under the charging mode of operation for integrated OBCs has not received much attention in the literature thus far. This paper investigates the optimal design of a six-phase SPM machine employed in an integrated OBC with two possible winding layouts, namely, dual three-phase or asymmetrical six-phase winding arrangements. First, the sizing equation and optimized geometrical parameters of a six-phase 12-slot/10-pole fractional slot concentrated winding (FSCW)-based SPM machine are introduced. Then, variations in the output average torque, parasitic torque ripple, and parasitic core losses with the slot opening width and the PM width-to-pole pitch ratio are further investigated for the two proposed winding layouts under various operation modes. Eventually, the optimally designed machine is simulated using analytical magnetic equivalent circuit (MEC) models. The obtained results are validated using 2D finite element (FE) analysis.
Research on Differential Protection of Generator Based on New Braking Mode
Authors: Xia Jingde , Li Shaozhuo , Gao Shuping , Shao Wenquan , Song Guobing , Chen Changjiang
Published: March 2021

In view of the difficulties in coordination between reliability and sensitivity of conventional generator differential protection, this paper presents a novel generator differential protection scheme based on a new braking method. On the basis of the mathematical model of the field-circuit coupling method and the electrical network cascade characteristics, the stator windings were combined and decoupled by the improved six-sequence component method to eliminate electromagnetic coupling between winding coils. In accordance with the basic characteristics of longitudinal impedance, the function of sub-item discrimination was realized. Numerous simulations and the up-to-date dynamic experiments showed that the proposed method has good state discrimination ability and can effectively resist the influence of current transformer saturation. Thus, it has an excellent prospect for engineering promotion.
Genome-Wide Analyses Reveal Genetic Convergence of Prolificacy between Goats and Sheep
Authors: Tao Lin , He Xiaoyun , Jiang Yanting , Liu Yufang , Ouyang Yina , Shen Yezhen , Hong Qionghua , Chu Mingxing
Published: March 2021

The litter size of domestic goats and sheep is an economically important trait that shows variation within breeds. Strenuous efforts have been made to understand the genetic mechanisms underlying prolificacy in goats and sheep. However, there has been a paucity of research on the genetic convergence of prolificacy between goats and sheep, which likely arose because of similar natural and artificial selection forces. Here, we performed comparative genomic and transcriptomic analyses to identify the genetic convergence of prolificacy between goats and sheep. By combining genomic and transcriptomic data for the first time, we identified this genetic convergence in (1) positively selected genes (CHST11 and SDCCAG8), (2) differentially expressed genes (SERPINA14, RSAD2, and PPIG at follicular phase, and IGF1, GPRIN3, LIPG, SLC7A11, and CHST15 at luteal phase), and (3) biological pathways (genomic level: osteoclast differentiation, ErbB signaling pathway, and relaxin signaling pathway; transcriptomic level: the regulation of viral genome replication at follicular phase, and protein kinase B signaling and antigen processing and presentation at luteal phase). These results indicated the potential physiological convergence and enhanced our understanding of the overlapping genetic makeup underlying litter size in goats and sheep.
Microsatellite DNA Analysis of Genetic Diversity and Parentage Testing in the Popular Dog Breeds in Poland
Authors: Radko Anna , Podbielska Angelika
Published: March 2021

There is growing concern that extreme breed standardization contributes to a reduction of the effective population size and high levels of inbreeding, resulting in the loss of genetic diversity in many breeds. This study examined genetic diversity among eight popular dog breeds in Poland and evaluated the effectiveness of a 21-microsatellite (STR) panel recommended by the International Society for Animal Genetics (ISAG) for parent verification. The following breeds were characterized: German Shepherd, Maltese, Irish Wolfhound, Yorkshire Terrier, Biewer Yorkshire Terrier, Golden Retriever, Labrador Retriever, and French Bulldog. STRUCTURE analysis showed breed distinctiveness among all the dog breeds under study. Reynold’s distance ranged between θw = 0.634 and θw = 0.260. The studied breeds showed a medium level of genetic differentiation; the mean number of alleles per locus ranged from 3.4 to 6.6, and the effective number of alleles from 2.1 to 3.5. The mean degree of heterozygosity varied from 49% to 69% and from 47% to 68% for HO and HE, respectively. The population inbreeding coefficient (FIS) indicated an absence of inbreeding in the studied breeds. The average polymorphism information content (PIC) values for most of the breeds were higher than 0.5. The cumulative power of discrimination (PD) for all the markers in all breeds reached high values (close to 1.0), while the probability of identity (PID) was low, ranging between 10−11 and 10−19. The cumulative exclusion probability when the genotypes of one (PE1) and both parents (PE2) are known and showed that the parentage can be confirmed with a probability of 94.92% to 99.95% and 99.78% to 99.9999%, respectively.
Diverse Regulation but Conserved Function: SOX9 in Vertebrate Sex Determination
Authors: Vining Brittany , Ming Zhenhua , Bagheri-Fam Stefan , Harley Vincent
Published: March 2021

Sex determination occurs early during embryogenesis among vertebrates. It involves the differentiation of the bipotential gonad to ovaries or testes by a fascinating diversity of molecular switches. In most mammals, the switch is SRY (sex determining region Y); in other vertebrates it could be one of a variety of genes including Dmrt1 or dmy. Downstream of the switch gene, SOX9 upregulation is a central event in testes development, controlled by gonad-specific enhancers across the 2 Mb SOX9 locus. SOX9 is a ‘hub’ gene of gonadal development, regulated positively in males and negatively in females. Despite this diversity, SOX9 protein sequence and function among vertebrates remains highly conserved. This article explores the cellular, morphological, and genetic mechanisms initiated by SOX9 for male gonad differentiation.
The Use of Halophytic Companion Plant (Portulaca oleracea L.) on Some Growth, Fruit, and Biochemical Parameters of Strawberry Plants under Salt Stress
Authors: Karakas Sema , Bolat Ibrahim , Dikilitas Murat
Published: March 2021

Strawberry is a salt-sensitive plant adversely affected by slightly or moderately saline conditions. The growth, fruit, and biochemical parameters of strawberry plants grown under NaCl (0, 30, 60, and 90 mmol L−1) conditions with or without a halophytic companion plant (Portulaca oleracea L.) were elucidated in a pot experiment. Salt stress negatively affected the growth, physiological (stomatal conductance and electrolyte leakage), and biochemical parameters such as chlorophyll contents (chl-a and chl-b); proline, hydrogen peroxide, malondialdehyde, catalase, and peroxidase enzyme activities; total soluble solids; and lycopene and vitamin C contents, as well as the mineral uptake, of strawberry plants. The companionship of P. oleracea increased fresh weight, dry weight, and fruit average weight, as well as the total fruit yield of strawberry plants along with improvements of physiological and biochemical parameters. This study showed that the cultivation of P. oleracea with strawberry plants under salt stress conditions effectively increased strawberry fruit yield and quality. Therefore, we suggest that approaches towards the use of P. oleracea could be an environmentally friendly method that should be commonly practiced where salinity is of great concern.
Optimization of Substrate and Nutrient Solution Strength for Lettuce and Chinese Cabbage Seedling Production in the Semi-Arid Environment of Central Myanmar
Authors: Michelon Nicola , Pennisi Giuseppina , Myint Nang , Orsini Francesco , Gianquinto Giorgio
Published: March 2021

The growing population of tropical countries has led to a new awareness of the importance of vegetables as a source of essential foods and nutrients. The success of vegetable cultivation depends to a large extent on high-quality seedlings. This work aimed at evaluating the effects of different substrates and different nutrient solution concentrations on the development of lettuce and Chinese cabbage seedlings in a semi-arid tropical area. Three independent experiments were conducted at the Soil and Water Research Station at Yezin Agriculture University, Myanmar (Myanmar, 19.83° N; 96.27° E). In all experiments a randomized block design was implemented with four treatments and three repetitions. In the first experiment the adaptability of lettuce seedling to two substrates (namely a Hulls Manure mix composed by 50% of mature cattle manure and 50% of carbonized rice husk and a soil based substrate constituted by 70% local soil, 20% burned rice husk, and 10% fresh cattle manure) and two nutrient solutions with different electrical conductivities (ECs) (W0.1, stored rainwater with EC = 0.13 dS m−1 and NS1.2, nutrient solution with EC = 1.20 dS m−1) were tested. In the second and third experiments, two species (lettuce and Chinese cabbage) were assessed for their response to nutrient solution concentrations. In both crops, 4 fertigation treatments (W0.1; NS0.6; NS1.2; and NS1.8) were supplied, by modulating the concentration of a compound mineral fertilizer (15:15:15) in the following ranges: W0.1: 0 g L−1, electrical conductivity (EC) 0.13 dS m−1, NS0.6: 0.3 g L−1, EC of 0.60 dS m−1; NS1.2: 0.6 g L−1, 1.2 dS m−1 EC, and NS1.8: 0.9 g L−1, 1.8 dS m−1 EC. Adopting different substrates and applying different nutrient solutions significantly affected growth (fresh weight and leaf morphology) and some physiological parameters (stomatal conductance, leaf temperature, and leaf chlorophyll content) of lettuce and Chinese cabbage seedling. From the first experiment, the combination of the soil based substrate and NS1.2 treatments allowed us to improve the seedlings’ growth. In the second experiment, highest growth of lettuce and Chinese cabbage seedlings was associated with NS1.2 and NS1.8, respectively. The presented results allow for the optimization of both growing media and nutrient solution management when lettuce and Chinese cabbage seedling are produced in the Central Dry Zone of Myanmar.
Genetic Diversity Analysis of Tomato (Solanum lycopersicum L.) with Morphological, Cytological, and Molecular Markers under Heat Stress
Authors: EL-Mansy Ahmed , Abd El-Moneim Diaa , ALshamrani Salha , Safhi Fatmah , Abdein Mohamed , Ibrahim Amira
Published: March 2021

Tomatoes are usually consumed daily in the human diet. High temperatures reduce the number of tomato yields per year. Heat stress has been considered one of the most prominent causes of alterations in morphological and molecular characteristics in crops that decrease normal growth, production, and yield in diverse plants, including tomatoes (Solanum lycopersicum L.). In this study, we evaluated six tomato lines, namely G1, G2, G3, G4, G5, and G6, at morphological, molecular, and cytological levels under heat stress. The average results of two seasons (2018 and 2019) clarified that the G6, G1, and G2 lines recorded the highest flowering values, as well as some fruit and vegetative growth traits. Furthermore, G6 and G2 had the maximum number of fruits/plant, whereas G2 and G1 produced the highest yield/plant under high temperatures. The number of chromosomes in all lines was 2n = 24, except for G5, in which the number was 2n = 26, whereas chromosome sizes were small, ranging from 323.08 to 464.48 µm. The G1 cultivar was a symmetrical cultivar (primitive), having the highest total form percentage (TF%) and symmetry index (Syi) values and the minimum karyotype asymmetry index (ASK) value, whereas G4 was asymmetrical (advanced). Molecular marker analysis demonstrated that intersimple sequence repeat (ISSR) primers 49A, HB-14, 49A, 49B, and 89B presented the highest values for polymorphism percentage P%, marker index (MI), effective multiplex ratio (EMR), and polymorphism information content (PIC), respectively. In contrast, OP-A3, OP-B3, SCoT 2, and SCoT 12 primers showed the highest PIC, EMR, MI, P%, and resolving power (Rp) values across the studied random amplified polymorphic DNA (RAPD) and start codon-targeted (SCoT) primers. Moreover, ISSR revealed the highest number of unique specific markers (6), followed by RAPD (4) and SCoT (3) markers. Cluster analysis of combined cytological data and data relating to molecular marker attributes separated the G1, G2, and G3 lines into one group, whereas the other lines were clustered in another group. On the whole, the application of combined analysis using morphological, cytological, and molecular genetics techniques could be considered to provide suitable parameters for studying the evolution of the genetic divergence between the studied tomato lines.
Intra-Storm Pattern Recognition through Fuzzy Clustering
Authors: Vantas Konstantinos , Sidiropoulos Epaminondas
Published: March 2021

The identification and recognition of temporal rainfall patterns is important and useful not only for climatological studies, but mainly for supporting rainfall–runoff modeling and water resources management. Clustering techniques applied to rainfall data provide meaningful ways for producing concise and inclusive pattern classifications. In this paper, a timeseries of rainfall data coming from the Greek National Bank of Hydrological and Meteorological Information are delineated to independent rainstorms and subjected to cluster analysis, in order to identify and extract representative patterns. The computational process is a custom-developed, domain-specific algorithm that produces temporal rainfall patterns using common characteristics from the data via fuzzy clustering in which (a) every storm may belong to more than one cluster, allowing for some equivocation in the data, (b) the number of the clusters is not assumed known a priori but is determined solely from the data and, finally, (c) intra-storm and seasonal temporal distribution patterns are produced. Traditional classification methods include prior empirical knowledge, while the proposed method is fully unsupervised, not presupposing any external elements and giving results superior to the former.
Rainfall-Runoff Modeling Using the HEC-HMS Model for the Al-Adhaim River Catchment, Northern Iraq
Authors: Hamdan Ahmed Naseh Ahmed , Almuktar Suhad , Scholz Miklas
Published: March 2021

It has become necessary to estimate the quantities of runoff by knowing the amount of rainfall to calculate the required quantities of water storage in reservoirs and to determine the likelihood of flooding. The present study deals with the development of a hydrological model named Hydrologic Engineering Center (HEC-HMS), which uses Digital Elevation Models (DEM). This hydrological model was used by means of the Geospatial Hydrologic Modeling Extension (HEC-GeoHMS) and Geographical Information Systems (GIS) to identify the discharge of the Al-Adhaim River catchment and embankment dam in Iraq by simulated rainfall-runoff processes. The meteorological models were developed within the HEC-HMS from the recorded daily rainfall data for the hydrological years 2015 to 2018. The control specifications were defined for the specified period and one day time step. The Soil Conservation Service-Curve number (SCS-CN), SCS Unit Hydrograph and Muskingum methods were used for loss, transformation and routing calculations, respectively. The model was simulated for two years for calibration and one year for verification of the daily rainfall values. The results showed that both observed and simulated hydrographs were highly correlated. The model’s performance was evaluated by using a coefficient of determination of 90% for calibration and verification. The dam’s discharge for the considered period was successfully simulated but slightly overestimated. The results indicated that the model is suitable for hydrological simulations in the Al-Adhaim river catchment.
Barriers and Facilitators of Smoking Cessation among Latinos Living with HIV: Perspectives from Key Leaders of Community-Based Organizations and Clinics
Authors: Cartujano-Barrera Francisco , Lee D’Abundo Michelle , Arana-Chicas Evelyn , Chock Surina , Valera Pamela , Kamen Charles S. , Cupertino Ana Paula
Published: March 2021

The purpose of this study was to identify the perspectives from key leaders of community-based organizations (CBOs) and clinics serving people living with HIV on barriers and facilitators of smoking cessation among Latino smokers living with HIV. Semi-structured interviews were conducted in English and Spanish with 10 key leaders. Using a social ecological model, qualitative theoretical analysis was used to analyze the results. Participants identified barriers at the individual (e.g., low education level, HIV, and financial stress), interpersonal (e.g., language barriers, low social support), organizational (e.g., lack of smoking cessation resources and targeted interventions), community (e.g., HIV and mental health stigma), and policy (e.g., paperwork for insurance) level. Participants identified facilitators at the individual (e.g., high participation in trials, good medication adherence), interpersonal (e.g., no smoking in social circles), organizational (e.g., bilingual staff, culturally competent care), community (e.g., providing transportation, the coronavirus disease 2019 as an opportunity for smoking cessation), and policy level (e.g., existence of funding, comprehensive insurance programs). These results provide operational strategies to address smoking disparities among Latino smokers living with HIV. Further research is needed on how to integrate these perspectives into effective smoking cessation interventions.
Association between Dietary Pattern, Lifestyle, Anthropometric Status, and Anemia-Related Biomarkers among Adults: A Population-Based Study from 2001 to 2015
Authors: Paramastri Rathi , Hsu Chien-Yeh , Lee Hsiu-An , Lin Li-Yin , Kurniawan Adi Lukas , Chao Jane C.-J.
Published: March 2021

Inadequate dietary intake, poor nutritional status, heavy smoking, and alcohol consumption are associated with the risk of anemia. The objective of this study was to investigate the associations between dietary patterns, lifestyle, nutritional status, and anemia-related biomarkers among adults using a multivariable regression model. Taiwanese adults aged 20–45 years (n = 118,924, 43,055 men and 75,869 women) were obtained from the Mei Jau Health Management Institution database, between 2001 and 2015, for data analysis. The anemia–inflammation-related dietary pattern was derived by reduced rank regression analysis. Dietary patterns with high intakes of eggs, meat, organ meats, rice or flour products, fried foods, sugary beverages, and processed foods significantly increased the risk of anemia, and was associated with decreased hemoglobin, hematocrit, and red blood cells, but increased white blood cells and C-reactive protein levels. Moreover, current alcohol drinkers, as well as people who were underweight, overweight, obese, and central obese, were more likely to increase their risk of anemia by 46%, 20%, 23%, 34%, and 28%, respectively. Interestingly, participants who are current or past smokers were inversely associated with risk of anemia. In conclusion, adherence to the anemia–inflammation dietary pattern was associated with an increased risk of anemia in Taiwanese adults. Furthermore, abnormal weight status and alcohol drinking were correlated with an increased risk of anemia.
The Therapeutic Relationship in China: A Systematic Review and Meta-Analysis
Authors: Mao Ying , Ning Wei , Zhang Ning , Xie Tao , Liu Jinnan , Lu Yongbo , Zhu Bin
Published: March 2021

With a surge of conflicts between healthcare workers and patients in recent years, the therapeutic relationship (TR) in China is presently in tension. Meanwhile, consequent issues have begun to emerge, such as the distrust between healthcare workers and patients and the decline in the quality of medical services. Although many empirical studies about the TR have been conducted in China, previous studies on TR and its influencing factors have been contradictory. Therefore, this study conducted a systematic review and meta-analysis to assess the current situation of the TR and to identify factors associated with the TR in Chinese hospitals from three perspectives (healthcare worker, patient, and therapeutic interaction). Two reviewers independently searched the literature, selected researches, and extracted data through comprehensively searching of three international electronic databases and three Chinese electronic databases to identify all relevant observational studies on influencing factors for TR in China published in English and Chinese from January 2000 to January 2020. Among the 3290 records initially identified, 11 studies met the selection criteria. A total of 96,906 individuals were included in the review. The results showed that 55.73% of healthcare workers consider the TR to be tense, and 33.7% of patients hold this view. The meta-analysis indicated that healthcare workers who were male, older, less educated, working in a non-surgical department, and had a senior title were more likely to be pessimistic about the TR. Patients who were rural residents, highly educated, and had no medical insurance were more likely to be pessimistic about the TR. Furthermore, the mutual trust could improve rapport between healthcare workers and patients. The 25 other related factors related to the TR were analyzed and described using a narrative approach. The findings might deserve consideration in the design of relative policies to promote harmony between doctors and patients.
The Scenario of Adoption and Foster Care in Relation to the Reproductive Medicine Practice in Asia
Authors: Shiraishi Eriko , Takae Seido , Faizal Ahmad Mohd , Sugimoto Kohei , Okamoto Aikou , Suzuki Nao
Published: March 2021

In vitro fertilization (IVF) is a hallmark of reproductive medicine. However, the inconclusive outcome leads to marital disharmonies; thus, the choices of gamete donation and surrogacy (GD/S) are often offered. In restricted countries, the child-rearing choice through foster/adoption care is promising, but the uptake remains low. We explore the current reproductive services and adoption scenarios in Asian countries to delineate this issue. The web and literature search using PubMed and Ichushi was conducted in Japanese and English using the keywords “adoption”, “foster care”, “reproductive medicine”, including the interview with the respective Asian clinicians. We found that an established adoption system was seen in China, Malaysia, and the Philippines, mainly due to the restriction of GD/S. Although GD/S were allowed in Thailand, Singapore, and India, the different local affordability of IVF cost led to various adoption system scenarios. Nevertheless, the country’s economic aspect does influence the establishment of adoption care, mainly due to financial support from local government. Otherwise, the significant barrier was the cultural/religious background leading to low adoption rates. We concluded that the adoption option should always be highlighted as an alternative strategy as it synergistically contributes to children’s and infertile couples’ welfare.
In Vivo Electrophysiology of Peptidergic Neurons in Deep Layers of the Lumbar Spinal Cord after Optogenetic Stimulation of Hypothalamic Paraventricular Oxytocin Neurons in Rats
Authors: Uta Daisuke , Oti Takumi , Sakamoto Tatsuya , Sakamoto Hirotaka
Published: March 2021

The spinal ejaculation generator (SEG) is located in the central gray (lamina X) of the rat lumbar spinal cord and plays a pivotal role in the ejaculatory reflex. We recently reported that SEG neurons express the oxytocin receptor and are activated by oxytocin projections from the paraventricular nucleus of hypothalamus (PVH). However, it is unknown whether the SEG responds to oxytocin in vivo. In this study, we analyzed the characteristics of the brain–spinal cord neural circuit that controls male sexual function using a newly developed in vivo electrophysiological technique. Optogenetic stimulation of the PVH of rats expressing channel rhodopsin under the oxytocin receptor promoter increased the spontaneous firing of most lamina X SEG neurons. This is the first demonstration of the in vivo electrical response from the deeper (lamina X) neurons in the spinal cord. Furthermore, we succeeded in the in vivo whole-cell recordings of lamina X neurons. In vivo whole-cell recordings may reveal the features of lamina X SEG neurons, including differences in neurotransmitters and response to stimulation. Taken together, these results suggest that in vivo electrophysiological stimulation can elucidate the neurophysiological response of a variety of spinal neurons during male sexual behavior.
Reduced Expression of Urokinase Plasminogen Activator in Brown Adipose Tissue of Obese Mouse Models
Authors: Wu Chung-Ze , Chang Li-Chien , Cheng Chao-Wen , Fang Te-Chao , Lin Yuh-Feng , Pei Dee , Chen Jin-Shuen
Published: March 2021

In recent decades, the obesity epidemic has resulted in morbidity and mortality rates increasing globally. In this study, using obese mouse models, we investigated the relationship among urokinase plasminogen activator (uPA), metabolic disorders, glomerular filtration rate, and adipose tissues. Two groups, each comprised of C57BL/6J and BALB/c male mice, were fed a chow diet (CD) and a high fat diet (HFD), respectively. Within the two HFD groups, half of each group were euthanized at 8 weeks (W8) or 16 weeks (W16). Blood, urine and adipose tissues were collected and harvested for evaluation of the effects of obesity. In both mouse models, triglyceride with insulin resistance and body weight increased with duration when fed a HFD in comparison to those in the groups on a CD. In both C57BL/6J and BALB/c HFD mice, levels of serum uPA initially increased significantly in the W8 group, and then the increment decreased in the W16 group. The glomerular filtration rate declined in both HFD groups. The expression of uPA significantly decreased in brown adipose tissue (BAT), but not in white adipose tissue, when compared with that in the CD group. The results suggest a decline in the expression of uPA in BAT in obese m models as the serum uPA increases. There is possibly an association with BAT fibrosis and dysfunction, which may need further study.
Insights of Phenolic Pathway in Fruits: Transcriptional and Metabolic Profiling in Apricot (Prunus armeniaca)
Authors: Gómez-Martínez Helena , Gil-Muñoz Francisco , Bermejo Almudena , Zuriaga Elena , Badenes Maria L.
Published: March 2021

There is an increasing interest in polyphenols, plant secondary metabolites, in terms of fruit quality and diet, mainly due to their antioxidant effect. However, the identification of key gene enzymes and their roles in the phenylpropanoid pathway in temperate fruits species remains uncertain. Apricot (Prunus armeniaca) is a Mediterranean fruit with high diversity and fruit quality properties, being an excellent source of polyphenol compounds. For a better understanding of the phenolic pathway in these fruits, we selected a set of accessions with genetic-based differences in phenolic compounds accumulation. HPLC analysis of the main phenolic compounds and transcriptional analysis of the genes involved in key steps of the polyphenol network were carried out. Phenylalanine ammonia-lyase (PAL), dihydroflavonol-4-reductase (DFR) and flavonol synthase (FLS) were the key enzymes selected. Orthologous of the genes involved in transcription of these enzymes were identified in apricot: ParPAL1, ParPAL2, ParDFR, ParFLS1 and ParFLS2. Transcriptional data of the genes involved in those critical points and their relationships with the polyphenol compounds were analyzed. Higher expression of ParDFR and ParPAL2 has been associated with red-blushed accessions. Differences in expression between paralogues could be related to the presence of a BOXCOREDCPAL cis-acting element related to the genes involved in anthocyanin synthesis ParFLS2, ParDFR and ParPAL2.
Environmental Enrichment Enhances Cav 2.1 Channel-Mediated Presynaptic Plasticity in Hypoxic–Ischemic Encephalopathy
Authors: Song Suk-Young , Pyo Soonil , Choi Sungchul , Oh Hee Sang , Seo Jung Hwa , Yu Ji Hea , Baek Ahreum , Shin Yoon-Kyum , Lee Hoo Young , Choi Ja Young , Cho Sung-Rae
Published: March 2021

Hypoxic–ischemic encephalopathy (HIE) is a devastating neonatal brain condition caused by lack of oxygen and limited blood flow. Environmental enrichment (EE) is a classic paradigm with a complex stimulation of physical, cognitive, and social components. EE can exert neuroplasticity and neuroprotective effects in immature brains. However, the exact mechanism of EE on the chronic condition of HIE remains unclear. HIE was induced by a permanent ligation of the right carotid artery, followed by an 8% O2 hypoxic condition for 1 h. At 6 weeks of age, HIE mice were randomly assigned to either standard cages or EE cages. In the behavioral assessments, EE mice showed significantly improved motor performances in rotarod tests, ladder walking tests, and hanging wire tests, compared with HIE control mice. EE mice also significantly enhanced cognitive performances in Y-maze tests. Particularly, EE mice showed a significant increase in Cav 2.1 (P/Q type) and presynaptic proteins by molecular assessments, and a significant increase of Cav 2.1 in histological assessments of the cerebral cortex and hippocampus. These results indicate that EE can upregulate the expression of the Cav 2.1 channel and presynaptic proteins related to the synaptic vesicle cycle and neurotransmitter release, which may be responsible for motor and cognitive improvements in HIE.
Structure–Function Relationship of Retinal Ganglion Cells in Multiple Sclerosis
Authors: Al-Nosairy Khaldoon , Horbrügger Marc , Schippling Sven , Wagner Markus , Haghikia Aiden , Pawlitzki Marc , Hoffmann Michael
Published: March 2021

The retinal ganglion cells (RGC) may be considered an easily accessible pathophysiological site of degenerative processes in neurological diseases, such as the RGC damage detectable in multiple sclerosis (MS) patients with (HON) and without a history of optic neuritis (NON). We aimed to assess and interrelate RGC functional and structural damage in different retinal layers and retinal sites. We included 12 NON patients, 11 HON patients and 14 healthy controls for cross-sectional multifocal pattern electroretinography (mfPERG) and optical coherence tomography (OCT) measurements. Amplitude and peak times of the mfPERG were assessed. Macula and disc OCT scans were acquired to determine macular retinal layer and peripapillary retinal nerve fiber layer (pRNFL) thickness. In both HON and NON patients the foveal N2 amplitude of the mfPERG was reduced compared to controls. The parafoveal P1 peak time was significantly reduced in HON only. For OCT, parafoveal (pfGCL) and perifoveal (pGCL) ganglion cell layer thicknesses were decreased in HON vs. controls, while pRNFL in the papillomacular bundle sector (PMB) showed reductions in both NON and HON. As the mfPERG derived N2 originates from RGC axons, these findings suggest foveal axonal dysfunction not only in HON, but also in NON patients.
Configurational Entropy of Folded Proteins and Its Importance for Intrinsically Disordered Proteins
Authors: Liu Meili , Das Akshaya K. , Lincoff James , Sasmal Sukanya , Cheng Sara Y. , Vernon Robert M. , Forman-Kay Julie D. , Head-Gordon Teresa
Published: March 2021

Many pairwise additive force fields are in active use for intrinsically disordered proteins (IDPs) and regions (IDRs), some of which modify energetic terms to improve the description of IDPs/IDRs but are largely in disagreement with solution experiments for the disordered states. This work considers a new direction—the connection to configurational entropy—and how it might change the nature of our understanding of protein force field development to equally well encompass globular proteins, IDRs/IDPs, and disorder-to-order transitions. We have evaluated representative pairwise and many-body protein and water force fields against experimental data on representative IDPs and IDRs, a peptide that undergoes a disorder-to-order transition, for seven globular proteins ranging in size from 130 to 266 amino acids. We find that force fields with the largest statistical fluctuations consistent with the radius of gyration and universal Lindemann values for folded states simultaneously better describe IDPs and IDRs and disorder-to-order transitions. Hence, the crux of what a force field should exhibit to well describe IDRs/IDPs is not just the balance between protein and water energetics but the balance between energetic effects and configurational entropy of folded states of globular proteins.
DFT Studies of Selected Epoxies with Mesogenic Units–Impact of Molecular Structure on Electro-Optical Response
Authors: Włodarska Magdalena , Mossety-Leszczak Beata
Published: March 2021

Theoretical studies of molecular structure and electric charge distribution were carried out for three epoxy compounds with different mesogenic cores. The compounds exhibit a nematic phase and form polymer networks that are potential bases for various composites. Results were compared to analogous materials with non-polar chains. A customized process involving geometry optimization of a series of conformations was employed to greatly increase likelihood of reaching global energy minimum for each molecule. All computations used Density Functional Theory (DFT) electron correlation model with the B3LYP hybrid functional. Molecular structure calculations yielded several parameters, including the magnitude and direction of the dipole moment, polarizability (α), first hyperpolarizability (β), and highest-occupied/lowest-unoccupied molecular orbital (HOMO-LUMO) energies. These parameters can help predict electronic properties of the nematic phase and the polymer network and assess their predisposition for application in electrooptical devices. In particular, the magnitude and direction of the dipole moment determine molecular alignment of liquid crystal phases in electric field, which enables controlling molecular order also in cured networks. Theoretical results were supplemented with observations of the nematics and their behavior in electric field. It was demonstrated for the studied compounds that a change in aliphatic chain polarity helps preserve and reinforce perpendicular alignment of molecules induced by electric field.
Trace Identification and Visualization of Multiple Benzimidazole Pesticide Residues on Toona sinensis Leaves Using Terahertz Imaging Combined with Deep Learning
Authors: Nie Pengcheng , Qu Fangfang , Lin Lei , He Yong , Feng Xuping , Yang Liang , Gao Huaqi , Zhao Lihua , Huang Lingxia
Published: March 2021

Molecular spectroscopy has been widely used to identify pesticides. The main limitation of this approach is the difficulty of identifying pesticides with similar molecular structures. When these pesticide residues are in trace and mixed states in plants, it poses great challenges for practical identification. This study proposed a state-of-the-art method for the rapid identification of trace (10 mg·L−1) and multiple similar benzimidazole pesticide residues on the surface of Toona sinensis leaves, mainly including benzoyl (BNL), carbendazim (BCM), thiabendazole (TBZ), and their mixtures. The new method combines high-throughput terahertz (THz) imaging technology with a deep learning framework. To further improve the model reliability beyond the THz fingerprint peaks (BNL: 0.70, 1.07, 2.20 THz; BCM: 1.16, 1.35, 2.32 THz; TBZ: 0.92, 1.24, 1.66, 1.95, 2.58 THz), we extracted the absorption spectra in frequencies of 0.2–2.2 THz from images as the input to the deep convolution neural network (DCNN). Compared with fuzzy Sammon clustering and four back-propagation neural network (BPNN) models (TrainCGB, TrainCGF, TrainCGP, and TrainRP), DCNN achieved the highest prediction accuracies of 100%, 94.51%, 96.26%, 94.64%, 98.81%, 94.90%, 96.17%, and 96.99% for the control check group, BNL, BCM, TBZ, BNL + BCM, BNL + TBZ, BCM + TBZ, and BNL + BCM + TBZ, respectively. Taking advantage of THz imaging and DCNN, the image visualization of pesticide distribution and residue types on leaves was realized simultaneously. The results demonstrated that THz imaging and deep learning can be potentially adopted for rapid-sensing detection of trace multi-residues on leaf surfaces, which is of great significance for agriculture and food safety.