bluuebunny/crossref_metadata_2025 huggingface dataset:
Dissolved iron (II) in the Baltic Sea surface water and implications for cyanobacterial bloom development
Authors: Breitbarth E. , Gelting J. , Walve J. , Hoffmann L. J. , Turner D. R. , Hassellöv M. , Ingri J.
Published: April 2010

Abstract. Iron chemistry measurements were conducted during summer 2007 at two distinct locations in the Baltic Sea (Gotland Deep and Landsort Deep) to evaluate the role of iron for cyanobacterial bloom development in these estuarine waters. Depth profiles of Fe(II) were measured by chemiluminescent flow injection analysis (CL-FIA). Up to 0.9 nmol Fe(II) L−1 were detected in light penetrated surface waters, which constitutes up to 20% to the dissolved Fe pool. This bioavailable iron source is a major contributor to the Fe requirements of Baltic Sea phytoplankton and apparently plays a major role for cyanobacterial bloom development during our study. Measured Fe(II) half life times in oxygenated water exceed predicted values and indicate organic Fe(II) complexation. Potential sources for Fe(II) ligands, including rainwater, are discussed. Fe(II) concentrations of up to 1.44 nmol L−1 were detected at water depths below the euphotic zone, but above the oxic anoxic interface. Mixed layer depths after strong wind events are not deep enough in summer time to penetrate the oxic-anoxic boundary layer. However, Fe(II) from anoxic bottom water may enter the sub-oxic zone via diapycnal mixing and diffusion.
Strain-specific responses of Emiliania huxleyi to changing seawater carbonate chemistry
Authors: Langer G. , Nehrke G. , Probert I. , Ly J. , Ziveri P.
Published: April 2010

Abstract. Four strains of the coccolithophore E. huxleyi (RCC1212, RCC1216, RCC1238, RCC1256) were grown in dilute batch culture at four CO2 levels ranging from ~200 μatm to ~1200 μatm. Growth rate, particulate organic carbon content, and particulate inorganic carbon content were measured, and organic and inorganic carbon production calculated. The four strains did not show a uniform response to carbonate chemistry changes in any of the analysed parameters and none of the four strains displayed a response pattern previously described for this species. We conclude that the sensitivity of different strains of E. huxleyi to acidification differs substantially and that this likely has a genetic basis. We propose that this can explain apparently contradictory results reported in the literature.
Rate of Iceland Sea acidification from time series measurements
Authors: Olafsson J. , Olafsdottir S. R. , Benoit-Cattin A. , Danielsen M. , Arnarson T. S. , Takahashi T.
Published: April 2010

Abstract. The Iceland Sea is one part of the Nordic Seas. Cold Arctic Water prevails there and the deep-water is an important source of North Atlantic Deep Water. We have evaluated time series observations of measured pCO2 and total CO2 concentration from discrete seawater samples during 1985–2008 for the surface and 1994–2008 for deep-water, and following changes in response to increasing atmospheric carbon dioxide. The surface pH in winter decreases at a rate of 0.0024 yr−1, which is 50% faster than average yearly rates at two subtropical time series stations, BATS and ESTOC. In the deep-water regime (>1500 m), the rate of pH decline is a quarter of that observed in surface waters. The surface seawater carbonate saturation states (Ω) are about 1.5 for aragonite and 2.5 for calcite, about half of levels found in subtropical surface waters. During 1985–2008, the degree of saturation (Ω) decreased at an average rate of 0.0072 yr−1 for aragonite and 0.012 yr−1 for calcite. The aragonite saturation horizon is currently at 1710 m and shoaling at 4 m yr−1. Based on this rate of shoaling and on the local hypsography, each year another 800 km2 of seafloor becomes exposed to waters that have become undersaturated with respect to aragonite.
Multi-scale comparisons of tree composition in Amazonian terra firme forests
Authors: Honorio Coronado E. N. , Baker T. R. , Phillips O. L. , Pitman N. C. A. , Pennington R. T. , Vásquez Martínez R. , Monteagudo A. , Mogollón H. , Dávila Cardozo N. , Ríos M. , García-Villacorta R. , Valderrama E. , Ahuite M. , Huamantupa I. , Neill D. A. , Laurance W. F. , Nascimento H. E. M. , Soares de Almeida S. , Killeen T. J. , Arroyo L. , Núñez P. , Freitas Alvarado L.
Published: April 2010

Abstract. We explored the floristic composition of terra firme forests across Amazonia using 55 plots. Firstly, we examined the floristic patterns using both genus- and species-level data and found that the species-level analysis more clearly distinguishes among forests. Next, we compared the variation in plot floristic composition at regional- and continental-scales, and found that average among-pair floristic similarity and its decay with distance behave similarly at regional- and continental-scales. Nevertheless, geographical distance had different effects on floristic similarity within regions at distances <100 km, where north-western and south-western Amazonian regions showed greater floristic variation than plots of central and eastern Amazonia. Finally, we quantified the role of environmental factors and geographical distance for determining variation in floristic composition. A partial Mantel test indicated that while geographical distance appeared to be more important at continental scales, soil fertility was crucial at regional scales within western Amazonia, where areas with similar soil conditions were more likely to share a high number of species. Overall, these results suggest that regional-scale variation in floristic composition can rival continental-scale differences within Amazonian terra firme forests, and that variation in floristic composition at both scales is influenced by geographical distance and environmental factors, such as climate and soil fertility. To fully account for regional-scale variation in continental studies of floristic composition, future floristic studies should focus on forest types poorly represented at regional scales in current datasets, such as terra firme forests with high soil fertility in north-western Amazonia.
European emissions of isoprene and monoterpenes from the Last Glacial Maximum to present
Authors: Schurgers G. , Hickler T. , Miller P. A. , Arneth A.
Published: April 2010

Abstract. Biogenic volatile organic compounds (BVOC), such as isoprene and monoterpenes, play an important role in atmospheric processes. BVOC species are oxidized in the atmosphere and influence levels of ozone. The less volatile amongst the BVOC and their oxidation products are important for the formation and growth of secondary biogenic aerosol. In this way, the Earth's radiation balance is affected. Geographic distribution and temporal changes in BVOC emissions are highly uncertain. Here we assessed changes in emission patterns across Europe since the Last Glacial Maximum (LGM) with a dynamic vegetation model. This model reproduces European tree species distribution and includes a process-based algorithm for terpenoid production. In a set of simulations the model was driven with paleoclimate anomalies and reconstructed CO2 concentrations. We quantified three main driving factors for the changes in emissions of isoprene and monoterpenes since the LGM: (1) the changes in climate, with temperature changes as the most important factor affecting plant physiology and terpenoid production in all plant species, (2) a change in species distribution related to the changes in climate, causing local shifts in emission characteristics of the vegetation, and (3) a change in CO2 concentration, causing opposing effects on the availability of different substrates for terpenoid production. The effect of atmospheric CO2 concentration is particularly uncertain, but sensitivity simulations showed an increase in European BVOC emissions in all sensitivity experiments irrespective of the use of a direct inhibition of terpenoid production by CO2. The effects of climate change on physiology and terpenoid production resulted in an overall relatively uniform increase of emissions in Europe over the simulation period, but regionally the effect of changes in species distribution and the related changes in emission capacities resulted in changes of emissions that can dominate over the physiology effects. This may have consequences for regional atmospheric chemistry simulations for the past, that have to rely on suitable geographic patterns of forest emissions.
Fine root dynamics for forests on contrasting soils in the Colombian Amazon
Authors: Jiménez E. M. , Moreno F. H. , Peñuela M. C. , Patiño S. , Lloyd J.
Published: April 2010

Abstract. It has been hypothesized that as soil fertility increases, the amount of carbon allocated to below-ground production (fine roots) should decrease. To evaluate this hypothesis, we measured the standing crop fine root mass and the production of fine roots (<2 mm) by two methods: (1) ingrowth cores and, (2) sequential soil coring, during 2.2 years in two lowland forests growing on different soils types in the Colombian Amazon. Differences of soil resources were defined by the type and physical and chemical properties of soil: a forest on clay loam soil (Endostagnic Plinthosol) at the Amacayacu National Natural Park and, the other on white sand (Ortseinc Podzol) at the Zafire Biological Station, located in the Forest Reservation of the Calderón River. We found that the standing crop fine root mass and the production was significantly different between soil depths (0–10 and 10–20 cm) and also between forests. The loamy sand forest allocated more carbon to fine roots than the clay loam forest with the production in loamy sand forest twice (mean±standard error=2.98±0.36 and 3.33±0.69 Mg C ha−1 yr−1, method 1 and 2, respectively) as much as for the more fertile loamy soil forest (1.51±0.14, method 1, and from 1.03±0.31 to 1.36±0.23 Mg C ha−1 yr−1, method 2). Similarly, the average of standing crop fine root mass was higher in the white-sands forest (10.94±0.33 Mg C ha−1) as compared to the forest on the more fertile soil (from 3.04±0.15 to 3.64±0.18 Mg C ha−1). The standing crop fine root mass also showed a temporal pattern related to rainfall, with the production of fine roots decreasing substantially in the dry period of the year 2005. These results suggest that soil resources may play an important role in patterns of carbon allocation to the production of fine roots in these forests as the proportion of carbon allocated to above- and below-ground organs is different between forest types. Thus, a trade-off between above- and below-ground growth seems to exist with our results also suggesting that there are no differences in total net primary productivity between these two forests, but with higher below-ground production and lower above-ground production for the forest on the nutrient poor soil.
A young afforestation area in Iceland was a moderate sink to CO2 only a decade after scarification and establishment
Authors: Bjarnadottir B. , Sigurdsson B. D. , Lindroth A.
Published: April 2010

Abstract. This study reports on three years (2004–2006) of measurements of net ecosystem exchange (NEE) over a young Siberian larch plantation in Iceland established on previously grazed heathland pasture that had been scarified prior to planting. The study evaluated the variation of NEE and its component fluxes, gross primary production (GPP) and ecosystem respiration (Re), with the aim to clarify how climatic factors controlled the site's carbon balance. The young plantation acted as a relatively strong sink for CO2 during all of the three years, with an annual net sequestration of −102, −154, and −67 g C m−2 for 2004, 2005, and 2006, respectively. This variation was more related to variation in carbon efflux (Re) than carbon uptake (GPP). The abiotic factors that showed the strongest correlation to Re were air temperature during the growing season and soil water potential. The GPP mostly followed the seasonal pattern in irradiance, except in 2005, when the plantation experienced severe spring frost damage that set the GPP back to zero. It was not expected that the rather slow-growing Siberian larch plantation would be such a strong sink for atmospheric CO2 only twelve years after site preparation and afforestation.
Short scale (6 h) temporal variation of sinking fluxes of planktonic and terrigeneous lipids at 200 m in the NW Mediterranean Sea
Authors: Méjanelle L. , Dachs J.
Published: April 2010

Abstract. Drifting sediment trap measurements were carried out at high temporal frequency in the northwestern Mediterranean Sea in the course of the DYNAPROC 2 campaign, during the transition between late summer to autumn conditions. Molecular biomarkers were analyzed in selected subsets of consecutive samples collected for 6 h at 200 m depth. Fluxes of n-alkanes, long-chain alkenones, sterols and steroid ketones show high variability between consecutive 6-h samples, comparable in range to seasonal variability. n-Alkane export ranges from 1.4 to 29.7μg m−2 d−1, fluxes of C37 alkenones varies from 0 to 14.2 μg m−2 d−1. Fluxes of sterols, steroid ketones and C30 alkane diol respectively range from 31 to 377, 2.2 to 46 and 0.3 to 9.3 μg m−2 d−1. Biomarker flux ranges are coherent with the relatively low primary production and the low export ratio encountered during the study. Molecular characteristics of biomarker composition is consistent with reworked algal and zooplanktonic organic matter. Lipid biomarker composition points to the dominance of haptophytes over dinoflagellates in the exported material, and to a minor contribution of diatoms and eustigmatophytes. The intrusion of coastal water at the study site was recorded by an enhanced imprint of higher plant n-alkanes. Two processes can be responsible for the pulses in biomarker flux: changes in the magnitude of particle flux (dry weight mass flux) and changes in the concentration of biomarkers in the particles. Concurrent variability in fluxes, significant Pearson correlations between fluxes of biomarkers of haptophytes, dinoflagellates, eustigmatophytes, zooplankton activity and higher plants (alkenones, dinosterol, alkyl diols, dehydrocholesterol, steroid ketones, p<0.01, n=31, suggest that the short term temporal variability of biomarker export fluxes depends primarily on the intensity of particle dry weight flux. Biomarker concentrations vary on a relatively narrower range than biomarker fluxes, indicating that changes in particle composition (due to degradation or change in source apportionment) has a weaker influence on flux variability. Thus, particle aggregation and sinking are key processes to explain the dynamic of biomarker export at a temporal scale of 6 h. None the less, abrupt changes of OC-normalized concentrations of biomarkers, in the time scale of 6 h, indicate that the exported particles composition also show short-time variability. Highest biomarker flux values recorded by the trap samples from 27 to 29 September correspond to highest values of zooplankton biomass integrated between the surface and 200 m. The decrease in primary production after the October wind events is echoed by minima in biomarker flux values. Despite these correspondences, the coupling between primary production and biomarker export is complex.
Effects of ultraviolet B radiation on (not so) transparent exopolymer particles
Authors: Ortega-Retuerta E. , Passow U. , Duarte C. M. , Reche I.
Published: April 2010

Abstract. Transparent exopolymer particles (TEP) are the most ubiquitous gel particles in the ocean and form abiotically from dissolved precursors. Although these particles can accumulate at the ocean surface, being thus exposed to intense sunlight, the role of solar radiation for the assembly and degradation of TEP is unknown. In this study, we experimentally determined the effects of visible and ultraviolet B (UVB) radiation on (1) TEP degradation (photolysis experiments), (2) TEP assembly from dissolved polymers (photoinhibition experiments) and (3) TEP release by microorganisms. Solar radiation, particularly in the UVB range, caused significant TEP photolysis, with loss rates from 27 to 34% per day. Dissolved polysaccharides did not increase in parallel. No TEP were formed under UVB, visible or dark conditions, indicating that light does not promote TEP assembly. UVB radiation enhanced TEP release by microorganisms, possibly due to cell deaths, or as a protective measure. Increases in UVB may lead to enhanced TEP photolysis in the ocean, with further consequences for TEP dynamics and, ultimately, sea-air gas exchange.
Patterns in planktonic metabolism in the Mediterranean Sea
Authors: Regaudie-de-Gioux A. , Vaquer-Sunyer R. , Duarte C. M.
Published: April 2010

Abstract. Planktonic gross community production (GPP), net community production (NCP) and community respiration (CR) across the Mediterranean Sea was examined in two cruises, Thresholds 2006 and 2007, each crossing the Mediterranean from West to East to test for consistent variation along this longitudinal gradient in late spring to early summer. GPP averaged 2.4±0.4 mmol O2 m−3 d−1, CR averaged 3.8±0.5 mmol O2 m−3 d−1, and NCP averaged – 0.8±0.6 mmol O2 m−3 d−1 across the studied sections, indicative of a tendency for a net heterotrophic metabolism in late spring to early summer, prevalent across studied sections of the Mediterranean Sea as reflected in 70% of negative NCP estimates. The median P/R ratio was 0.6, also indicating a strong prevalence of heterotrophic communities (P/R<1) along the studied sections of the Mediterranean Sea. The communities tended to be net heterotrophic (i.e. P/R<1) at GPP less than 2.8 mmol O2 m−3 d−1. The Western Mediterranean tended to support a higher gross primary production and community respiration than the Eastern basin did, but these differences were not statistically significant (t-test, p>0.05). The net heterotrophy of the studied sections of the Mediterranean Sea indicates that allochthonous carbon should be important to subsidise planktonic metabolism during the late spring.
Dynamics of ammonia exchange with cut grassland: strategy and implementation of the GRAMINAE Integrated Experiment
Authors: Sutton M. A. , Nemitz E. , Theobald M. R. , Milford C. , Dorsey J. R. , Gallagher M. W. , Hensen A. , Jongejan P. A. C. , Erisman J. W. , Mattsson M. , Schjoerring J. K. , Cellier P. , Loubet B. , Roche R. , Neftel A. , Hermann B. , Jones S. K. , Lehman B. E. , Horvath L. , Weidinger T. , Rajkai K. , Burkhardt J. , Löpmeier F. J. , Daemmgen U.
Published: April 2010

Abstract. A major international experiment on ammonia (NH3) biosphere-atmosphere exchange was conducted over intensively managed grassland at Braunschweig, Germany. The experimental strategy was developed to allow an integrated analysis of different features of NH3 exchange including: a) quantification of nearby emissions and advection effects, b) estimation of net NH3 fluxes with the canopy by a range of micrometeorological measurements, c) analysis of the sources and sinks of NH3 within the plant canopy, including soils and bioassay measurements, d) comparison of the effects of grassland management options on NH3 fluxes and e) assessment of the interactions of NH3 fluxes with aerosol exchange processes. Additional technical objectives included the inter-comparison of different estimates of sensible and latent heat fluxes, as well as continuous-gradient and Relaxed Eddy Accumulation (REA) systems for NH3 fluxes. The prior analysis established the spatial and temporal design of the experiment, allowing significant synergy between these objectives. The measurements were made at 7 measurement locations, thereby quantifying horizontal and vertical profiles, and covered three phases: a) tall grass canopy prior to cutting (7 days), b) short grass after cutting (7 days) and c) re-growing sward following fertilization with ammonium nitrate (10 days). The sequential management treatments allowed comparison of sources-sinks, advection and aerosol interactions under a wide range of NH3 fluxes. This paper describes the experimental strategy and reports the grassland management history, soils, environmental conditions and air chemistry during the experiment, finally summarizing how the results are coordinated in the accompanying series of papers.
Bacterial diversity of autotrophic enriched cultures from remote, glacial Antarctic, Alpine and Andean aerosol, snow and soil samples
Authors: González-Toril E. , Amils R. , Delmas R. J. , Petit J.-R. , Komárek J. , Elster J.
Published: April 2010

Abstract. Four different communities and one culture of autotrophic microbial assemblages were obtained by incubation of samples collected from high elevation snow in the Alps (Mt. Blanc area) and the Andes (Nevado Illimani summit, Bolivia), from Antarctic aerosol (French station Dumont d'Urville) and a maritime Antarctic soil (King George Island, South Shetlands, Uruguay Station Artigas), in a minimal mineral (oligotrophic) media. Molecular analysis of more than 200 16S rRNA gene sequences showed that all cultured cells belong to the Bacteria domain. Phylogenetic comparison with the currently available rDNA database allowed sequences belonging to Proteobacteria Alpha-, Beta- and Gamma-proteobacteria), Actinobacteria and Bacteroidetes phyla to be identified. The Andes snow culture was the richest in bacterial diversity (eight microorganisms identified) and the marine Antarctic soil the poorest (only one). Snow samples from Col du Midi (Alps) and the Andes shared the highest number of identified microorganisms (Agrobacterium, Limnobacter, Aquiflexus and two uncultured Alphaproteobacteria clones). These two sampling sites also shared four sequences with the Antarctic aerosol sample (Limnobacter, Pseudonocardia and an uncultured Alphaproteobacteriaclone). The only microorganism identified in the Antarctica soil (Brevundimonas sp.) was also detected in the Antarctic aerosol. Most of the identified microorganisms had been detected previously in cold environments, marine sediments soils and rocks. Air current dispersal is the best model to explain the presence of very specific microorganisms, like those identified in this work, in environments very distant and very different from each other.
Particle fluxes in the deep Eastern Mediterranean basins: the role of ocean vertical velocities
Authors: Patara L. , Pinardi N. , Corselli C. , Malinverno E. , Tonani M. , Santoleri R. , Masina S.
Published: April 2010

Abstract. This paper analyzes the relationship between deep sedimentary fluxes and ocean current vertical velocities in an offshore area of the Ionian Sea, the deepest basin of the Eastern Mediterranean Sea. Sediment trap data are collected at 500 m and 2800 m depth in two successive moorings covering the period September 1999–May 2001. A tight coupling is observed between the upper and deep traps and the estimated particle sinking rates are more than 200 m day−1. The current vertical velocity field is computed from a 1/16°×1/16° Ocean General Circulation Model simulation and from the wind stress curl. Current vertical velocities are larger and more variable than Ekman vertical velocities, yet the general patterns are alike. Current vertical velocities are generally smaller than 1 m day−1: we therefore exclude a direct effect of downward velocities in determining high sedimentation rates. However we find that upward velocities in the subsurface layers of the water column are positively correlated with deep particle fluxes. We thus hypothesize that upwelling would produce an increase in upper ocean nutrient levels – thus stimulating primary production and grazing – a few weeks before an enhanced vertical flux is found in the sediment traps. High particle sedimentation rates may be attained by means of rapidly sinking fecal pellets produced by gelatinous macro-zooplankton. Other sedimentation mechanisms, such as dust deposition, are also considered in explaining large pulses of deep particle fluxes. The fast sinking rates estimated in this study might be an evidence of the efficiency of the biological pump in sequestering organic carbon from the surface layers of the deep Eastern Mediterranean basins.
Estimating carbon emissions from African wildfires
Authors: Lehsten V. , Tansey K. , Balzter H. , Thonicke K. , Spessa A. , Weber U. , Smith B. , Arneth A.
Published: April 2010

Abstract. We developed a technique for studying seasonal and interannual variation in pyrogenic carbon emissions from Africa using a modelling approach that scales burned area estimates from L3JRC, a map recently generated from remote sensing of burn scars instead of active fires. Carbon fluxes were calculated by the novel fire model SPITFIRE embedded within the dynamic vegetation model framework LPJ-GUESS, using daily climate input. For the time period from 2001 to 2005 an average area of 195.5±24×104 km2 was burned annually, releasing an average of 723±70 Tg C to the atmosphere; these estimates for the biomass burned are within the range of previously published estimates. Despite the fact that the majority of wildfires are ignited by humans, strong relationships between climatic conditions (particularly precipitation), net primary productivity and overall biomass burnt emerged. Our investigation of the relationships between burnt area and carbon emissions and their potential drivers available litter and precipitation revealed uni-modal responses to annual precipitation, with a maximum around 1000 mm for burned area and emissions, or 1200 mm for litter availability. Similar response patterns identified in savannahs worldwide point to precipitation as a chief determinant for short-term variation in fire regime. A considerable variability that cannot be explained by fire-precipitation relationships alone indicates the existence of additional factors that must be taken into account.
Imminent ocean acidification in the Arctic projected with the NCAR global coupled carbon cycle-climate model
Authors: Steinacher M. , Joos F. , Frölicher T. L. , Plattner G.-K. , Doney S. C.
Published: April 2010

Abstract. Ocean acidification from the uptake of anthropogenic carbon is simulated for the industrial period and IPCC SRES emission scenarios A2 and B1 with a global coupled carbon cycle-climate model. Earlier studies identified seawater saturation state with respect to aragonite, a mineral phase of calcium carbonate, as a key variable governing impacts on corals and other shell-forming organisms. Globally in the A2 scenario, water saturated by more than 300%, considered suitable for coral growth, vanishes by 2070 AD (CO2≈630 ppm), and the ocean volume fraction occupied by saturated water decreases from 42% to 25% over this century. The largest simulated pH changes worldwide occur in Arctic surface waters, where hydrogen ion concentration increases by up to 185% (ΔpH=−0.45). Projected climate change amplifies the decrease in Arctic surface mean saturation and pH by more than 20%, mainly due to freshening and increased carbon uptake in response to sea ice retreat. Modeled saturation compares well with observation-based estimates along an Arctic transect and simulated changes have been corrected for remaining model-data differences in this region. Aragonite undersaturation in Arctic surface waters is projected to occur locally within a decade and to become more widespread as atmospheric CO2 continues to grow. The results imply that surface waters in the Arctic Ocean will become corrosive to aragonite, with potentially large implications for the marine ecosystem, if anthropogenic carbon emissions are not reduced and atmospheric CO2 not kept below 450 ppm.
Physical injury stimulates aerobic methane emissions from terrestrial plants
Authors: Wang Z.-P. , Gulledge J. , Zheng J.-Q. , Liu W. , Li L.-H. , Han X.-G.
Published: April 2010

Abstract. Physical injury is common in terrestrial plants as a result of grazing, harvesting, trampling, and extreme weather events. Previous studies demonstrated enhanced emission of non-microbial CH4 under aerobic conditions from plant tissues when they were exposed to increasing UV radiation and temperature. Since physical injury is also a form of environmental stress, we sought to determine whether it would also affect CH4 emissions from plants. Physical injury (cutting) stimulated CH4 emission from fresh twigs of Artemisia species under aerobic conditions. More cutting resulted in more CH4 emissions. Hypoxia also enhanced CH4 emission from both uncut and cut Artemisia frigida twigs. Physical injury typically results in cell wall degradation, which may either stimulate formation of reactive oxygen species (ROS) or decrease scavenging of them. Increased ROS activity might explain increased CH4 emission in response to physical injury and other forms of stress. There were significant differences in CH4 emissions among 10 species of Artemisia, with some species emitting no detectable CH4 under any circumstances. Consequently, CH4 emissions may be species-dependent and therefore difficult to estimate in nature based on total plant biomass. Our results and those of previous studies suggest that a variety of environmental stresses stimulate CH4 emission from a wide variety of plant species. Global change processes, including climate change, depletion of stratospheric ozone, increasing ground-level ozone, spread of plant pests, and land-use changes, could cause more stress in plants on a global scale, potentially stimulating more CH4 emission globally.
Mesoscale modelling of the CO2 interactions between the surface and the atmosphere applied to the April 2007 CERES field experiment
Authors: Sarrat C. , Noilhan J. , Lacarrère P. , Ceschia E. , Ciais P. , Dolman A. J. , Elbers J. A. , Gerbig C. , Gioli B. , Lauvaux T. , Miglietta F. , Neininger B. , Ramonet M. , Vellinga O. , Bonnefond J. M.
Published: April 2010

Abstract. This paper describes a numerical interpretation of the April 2007, CarboEurope Regional Experiment Strategy (CERES) campaign, devoted to the study of the CO2 cycle at the regional scale. Four consecutive clear sky days with intensive observations of CO2 concentration, fluxes at the surface and in the boundary layer have been simulated with the Meso-NH mesoscale model, coupled to ISBA-A-gs land surface model. The main result of this paper is to show how aircraft observations of CO2 concentration have been used to identify surface model errors and to calibrate the CO2 driving component of the surface model. In fact, the comparisons between modelled and observed CO2 concentrations within the Atmospheric Boundary Layer (ABL) allow to calibrate and correct not only the parameterization of respired CO2 fluxes by the ecosystem but also the Leaf Area Index (LAI) of the dominating land cover. After this calibration, the paper describes systematic comparisons of the model outputs with numerous data collected during the CERES campaign, in April 2007. For instance, the originality of this paper is the spatial integration of the comparisons. In fact, the aircraft observations of CO2 concentration and fluxes and energy fluxes are used for the model validation from the local to the regional scale. As a conclusion, the CO2 budgeting approach from the mesoscale model shows that the winter croplands are assimilating more CO2 than the pine forest, at this stage of the year and this case study.
Significant contribution of large particles to optical backscattering in the open ocean
Authors: Dall'Olmo G. , Westberry T. K. , Behrenfeld M. J. , Boss E. , Slade W. H.
Published: April 2010

Abstract. The light scattering properties of oceanic particles have been suggested as an alternative index of phytoplankton biomass than chlorophyll-a concentration (chl-a), with the benefit of being less sensitive to physiological forcings (e.g., light and nutrients) that alter the intracellular pigment concentrations. The drawback of particulate scattering is that it is not unique to phytoplankton. Nevertheless, field studies have demonstrated that, to first order, the particulate beam-attenuation coefficient (cp) can track phytoplankton biomass. The relationship between cp and the particulate backscattering coefficient (bbp), a property retrievable from space, has not been fully evaluated, largely due to a lack of open-ocean field observations. Here, we present extensive data on inherent optical properties from the Equatorial Pacific surface waters and demonstrate a remarkable coherence in bbp and cp. Coincident measurements of particle size distributions (PSDs) and optical properties of size-fractionated samples indicate that this covariance is due to both the conserved nature of the PSD and a greater contribution of phytoplankton-sized particles to bbp than theoretically predicted. These findings suggest that satellite-derived bbpcould provide similar information on phytoplankton biomass in the open ocean as cp.
Effect of CO2 on the properties and sinking velocity of aggregates of the coccolithophore Emiliania huxleyi
Authors: Biermann A. , Engel A.
Published: April 2010

Abstract. Coccolithophores play an important role in organic matter export due to their production of the mineral calcite that can act as ballast. Recent studies indicated that calcification in coccolithophores may be affected by changes in seawater carbonate chemistry. We investigated the influence of CO2 on the aggregation and sinking behaviour of the coccolithophore Emiliania huxleyi (PML B92/11) during a laboratory experiment. The coccolithophores were grown under low (~180 μatm), medium (~380 μatm), and high (~750 μatm) CO2 conditions. Aggregation of the cells was promoted using roller tables. Size and settling velocity of aggregates were determined during the incubation using video image analysis. Our results indicate that aggregate properties are sensitive to changes in the degree of ballasting, as evoked by ocean acidification. Average sinking velocity was highest for low CO2 aggregates (~1292 m d−1) that also had the highest particulate inorganic to particulate organic carbon (PIC/POC) ratio. Lowest PIC/POC ratios and lowest sinking velocity (~366 m d−1) at comparable sizes were observed for aggregates of the high CO2 treatment. Aggregates of the high CO2 treatment showed a 4-fold lower excess density (~4.2×10−4 g cm−3) when compared to aggregates from the medium and low CO2 treatments (~1.7 g×10−3 cm−3). We also observed that more aggregates formed in the high CO2 treatment, and that those aggregates contained more bacteria than aggregates in the medium and low CO2 treatment. If applicable to the future ocean, our findings suggest that a CO2 induced reduction of the calcite content of aggregates could weaken the deep export of organic matter in the ocean, particularly in areas dominated by coccolithophores.
Methane production in aerobic oligotrophic surface water in the central Arctic Ocean
Authors: Damm E. , Helmke E. , Thoms S. , Schauer U. , Nöthig E. , Bakker K. , Kiene R. P.
Published: April 2010

Abstract. A methane surplus relative to the atmospheric equilibrium is a frequently observed feature of ocean surface water. Despite the common fact that biological processes are responsible for its origin, the formation of methane in aerobic surface water is still poorly understood. We report on methane production in the central Arctic Ocean, which was exclusively detected in Pacific derived water but not nearby in Atlantic derived water. The two water masses are distinguished by their different nitrate to phosphate ratios. We show that methane production occurs if nitrate is depleted but phosphate is available as a P source. Apparently the low N:P ratio enhances the ability of bacteria to compete for phosphate while the phytoplankton metabolite dimethylsulfoniopropionate (DMSP) is utilized as a C source. This was verified by experimentally induced methane production in DMSP spiked Arctic sea water. Accordingly we propose that methylated compounds may serve as precursors for methane and thermodynamic calculations show that methylotrophic methanogenesis can provide energy in aerobic environments.
Effects of long-term high CO2 exposure on two species of coccolithophores
Authors: Müller M. N. , Schulz K. G. , Riebesell U.
Published: April 2010

Abstract. The physiological performance of two coccolithophore species, Emiliania huxleyi and Coccolithus braarudii, was investigated during long-term exposure to elevated pCO2 levels. Mono-specific cultures were grown over 152 (E. huxleyi) and 65 (C. braarudii) generations while pCO2 was gradually increased to maximum levels of 1150 μatm (E. huxleyi) and 930 μatm (C. braarudii) and kept constant thereafter. Rates of cell growth and cell quotas of particulate organic carbon (POC), particulate inorganic carbon (PIC) and total particulate nitrogen (TPN) were determined repeatedly throughout the incubation period. Increasing pCO2 caused a decrease in cell growth rate of 9% and 29% in E. huxleyi and C. braarudii, respectively. In both species cellular PIC:TPN and PIC:POC ratios decreased in response to rising pCO2, whereas no change was observed in the POC:TPN ratios of E. huxleyi and C. braarudii. These results are consistent with those obtained in shorter-term high CO2 exposure experiments following abrupt pertubations of the seawater carbonate system and indicate that for the strains tested here a gradual CO2 increase does not alleviate CO2/pH sensitivity.
Assessing variability and long-term trends in burned area by merging multiple satellite fire products
Authors: Giglio L. , Randerson J. T. , van der Werf G. R. , Kasibhatla P. S. , Collatz G. J. , Morton D. C. , DeFries R. S.
Published: April 2010

Abstract. Long term, high quality estimates of burned area are needed for improving both prognostic and diagnostic fire emissions models and for assessing feedbacks between fire and the climate system. We developed global, monthly burned area estimates aggregated to 0.5° spatial resolution for the time period July 1996 through mid-2009 using four satellite data sets. From 2001–2009, our primary data source was 500-m burned area maps produced using Moderate Resolution Imaging Spectroradiometer (MODIS) surface reflectance imagery; more than 90% of the global area burned during this time period was mapped in this fashion. During times when the 500-m MODIS data were not available, we used a combination of local regression and regional regression trees developed over periods when burned area and Terra MODIS active fire data were available to indirectly estimate burned area. Cross-calibration with fire observations from the Tropical Rainfall Measuring Mission (TRMM) Visible and Infrared Scanner (VIRS) and the Along-Track Scanning Radiometer (ATSR) allowed the data set to be extended prior to the MODIS era. With our data set we estimated that the global annual area burned for the years 1997–2008 varied between 330 and 431 Mha, with the maximum occurring in 1998. We compared our data set to the recent GFED2, L3JRC, GLOBCARBON, and MODIS MCD45A1 global burned area products and found substantial differences in many regions. Lastly, we assessed the interannual variability and long-term trends in global burned area over the past 13 years. This burned area time series serves as the basis for the third version of the Global Fire Emissions Database (GFED3) estimates of trace gas and aerosol emissions.
Decadal water balance of a temperate Scots pine forest (Pinus sylvestris L.) based on measurements and modelling
Authors: Gielen B. , Verbeeck H. , Neirynck J. , Sampson D. A. , Vermeiren F. , Janssens I. A.
Published: April 2010

Abstract. We examined the water balance components of an 80-year-old Scots pine (Pinus sylvestris L.) forest stand in the Campine region of Belgium over a ten year period using five very different approaches; our methods ranged from data intensive measurements to process model simulations. Specifically, we used the conservative ion method (CI), the Eddy Covariance technique (EC), an empirical model (WATBAL), and two process models that vary greatly in their temporal and spatial scaling, the ORCHIDEE global land-surface model and SECRETS a stand- to ecosystem-scale biogeochemical process model. Herein we used the EC technique as a standard for the evapotranspiration (ET) estimates. Using and evaluating process based models with data is extremely useful as models are the primary method for integration of small-scale, process level phenomena into comprehensive description of forest stand or ecosystem function. Results demonstrated that the two process models corresponded well to the seasonal patterns and yearly totals of ET from the EC approach. However, both WATBAL and CI approaches overestimated ET when compared to the EC estimates. We found significant relationships between several meteorological variables (i.e., vapour pressure deficit [VPD], mean air temperature [Tair], and global radiation [Rg]) and ET on monthly basis for all approaches. In contrast, few relationships were significant on annual basis. Independent of the method examined, ET exhibited low inter-annual variability. Consequently, drainage fluxes were highly correlated with annual precipitation for all approaches examined, except CI.
Influence of consumer-driven nutrient recycling on primary production and the distribution of N and P in the ocean
Authors: Nugraha A. , Pondaven P. , Tréguer P.
Published: April 2010

Abstract. In this study we investigated the impact of consumer-driven nutrient recycling (CNR) on oceanic primary production and the distribution of nitrogen (N) and phosphorus (P) in the deep ocean. For this purpose, we used and extended two existing models: a 2-box model of N and P cycling in the global ocean (Tyrrell, 1999), and the model of Sterner (1990) which formalised the principles of CNR theory. The resulting model showed that marine herbivores may affect the supply and the stoichiometry of N and P in the ocean, thereby exerting a control on global primary production. The predicted global primary production was higher when herbivores were included in the model, particularly when these herbivores had higher N:P ratios than phytoplankton. This higher primary production was triggered by a low N:P resupply ratio, which, in turn, favoured the P-limited N2-fixation and eventually the N-limited non-fixers. Conversely, phytoplankton with higher N:P ratios increased herbivore yield until phosphorus became the limiting nutrient, thereby favouring herbivores with a low P-requirement. Finally, producer-consumer interactions fed back on the N and P inventories in the deep ocean through differential nutrient recycling. In this model, N deficit or N excess in the deep ocean resulted not only from the balance between N2-fixation and denitrification, but also from CNR, especially when the elemental composition of producers and consumers differed substantially. Although the model is fairly simple, these results emphasize our need for a better understanding of how consumers influence nutrient recycling in the ocean.
Detection of low bottom water oxygen concentrations in the North Sea; implications for monitoring and assessment of ecosystem health
Authors: Greenwood N. , Parker E. R. , Fernand L. , Sivyer D. B. , Weston K. , Painting S. J. , Kröger S. , Forster R. M. , Lees H. E. , Mills D. K. , Laane R. W. P. M.
Published: April 2010

Abstract. This paper presents new results from high temporal resolution observations over two years (2007 and 2008) from instrumented moorings deployed in the central North Sea, at the Oyster Grounds and on the northern slope of Dogger Bank (North Dogger). The water column was stratified in the summer at both sites, leading to limited exchange of the water in the bottom mixed layer. Data from these moorings revealed the variable nature of summer oxygen depletion at the Oyster Grounds. The combination of in situ and ship-based measurements allowed the physical and biological conditions leading to decreasing dissolved oxygen concentrations in bottom water to be examined. In 2007 and 2008, the concentration of dissolved oxygen in the bottom water at both sites was observed to decrease throughout the summer period after the onset of stratification. Depleted dissolved oxygen concentration (6.5 mg l−1, 71% saturation) was measured at the North Dogger, a site which is not significantly influenced by anthropogenic nutrient inputs. Lower oxygen saturation (5.2 mg l−1, 60% saturation) was measured for short durations at the Oyster Grounds. The seasonal increase in bottom water temperature accounted for 55% of the decrease in dissolved oxygen concentration at the Oyster Grounds compared to 10% at North Dogger. Dissolved oxygen concentration in bottom water at the Oyster Grounds was shown to be strongly influenced by short term events including storms and pulses of particulate organic matter input. In contrast, dissolved oxygen concentration in bottom water at the North Dogger reflected longer seasonal processes such as a gradual temperature increase over the summer and a more steady supply of particulate organic matter to the bottom mixed layer. The differences between the study sites shows the need for an improved understanding of the mechanisms driving these processes if the use of oxygen in marine management and ensuring ecosystem health is to be meaningful and successful in the future. These high frequency observations provide greater understanding of the nature of the depletion in bottom oxygen concentration in the North Sea.
Effect of peat quality on microbial greenhouse gas formation in an acidic fen
Authors: Reiche M. , Gleixner G. , Küsel K.
Published: April 2010

Abstract. Peatlands play an important role in the global carbon cycle and represent both an important stock of soil carbon and a substantial natural source of relevant greenhouse gases like CO2 and CH4. While it is known that the quality of organic matter affects microbial degradation and mineralization processes in peatlands, the manner in which the quality of peat organic matter affects the formation of CO2 and CH4 remains unclear. In this study we developed a fast and simple peat quality index in order to estimate its potential greenhouse gas formation by linking the thermo-degradability of peat with potential anaerobic CO2 and CH4 formation rates. Peat samples were obtained at several depths (0–40 cm) at four sampling locations from an acidic fen (pH 4.7). CO2 and CH4 formation rates were highly spatially variable and depended on depth, sampling location, and the composition of pyrolysable organic matter. Peat samples active in CO2 and CH4 formation had a quality index above 1.35, and the fraction of thermally labile pyrolyzable organic matter (comparable to easily available carbon substrates for microbial activity) obtained by thermogravimetry was above 35%. Curie-point pyrolysis-gas chromatography/mass spectrometry mainly identified carbohydrates and lignin as pyrolysis products in these samples, indicating that undecomposed organic matter was found in this fraction. In contrast, lipids and unspecific pyrolysis products, which indicate recalcitrant and highly decomposed organic matter, correlated significantly with lower CO2 formation and reduced methanogenesis. Our results suggest that undecomposed organic matter is a prerequisite for CH4 and CO2 development in acidic fens. Furthermore, the new peat quality index should aide the estimation of potential greenhouse gas formation resulting from peatland restoration and permafrost thawing and help yield more robust models of trace gas fluxes from peatlands for climate change research.