bluuebunny/crossref_metadata_2025 huggingface dataset:
Neural network analysis of neutron and x-ray reflectivity data: pathological cases, performance and perspectives
Authors: Greco Alessandro , Starostin Vladimir , Hinderhofer Alexander , Gerlach Alexander , Skoda Maximilian W A , Kowarik Stefan , Schreiber Frank
Published: April 2021

Neutron and x-ray reflectometry (NR and XRR) are powerful techniques to investigate the structural, morphological and even magnetic properties of solid and liquid thin films. While neutrons and x-rays behave similarly in many ways and can be described by the same general theory, they fundamentally differ in certain specific aspects. These aspects can be exploited to investigate different properties of a system, depending on which particular questions need to be answered. Having demonstrated the general applicability of neural networks to analyze XRR and NR data before (Greco et al 2019 J. Appl. Cryst.
52 1342), this study discusses challenges arising from certain pathological cases as well as performance issues and perspectives. These cases include a low signal-to-noise ratio, a high background signal (e.g. from incoherent scattering), as well as a potential lack of a total reflection edge (TRE). By dynamically modifying the training data after every mini batch, a fully-connected neural network was trained to determine thin film parameters from reflectivity curves. We show that noise and background intensity pose no significant problem as long as they do not affect the TRE. However, for curves without strong features the prediction accuracy is diminished. Furthermore, we compare the prediction accuracy for different scattering length density combinations. The results are demonstrated using simulated data of a single-layer system while also discussing challenges for multi-component systems.
On the construction of multiresolution analyses associated to general subdivision schemes
Authors: Kui Zhiqing , Baccou Jean , Liandrat Jacques
Published: April 2021

Subdivision schemes are widely used in numerical mathematics such as signal/image approximation, analysis and control of data or numerical analysis. However, to develop their full power, subdivision schemes should be incorporated into a multiresolution analysis that, mimicking wavelet analyses, provides a multi-scale decomposition of a function, a curve, or a surface. The ingredients needed to define a multiresolution analysis associated to a subdivision scheme are a decimation scheme and detail operators. Their construction is not straightforward as soon as the subdivision scheme is non-interpolatory.

This paper is devoted to the construction of decimation schemes and detail operators compatible with general subdivision schemes, including non-linear ones. Analysis of the performances of the constructed analyses is carried out. Some numerical applications are presented in the framework of image approximation.
Eisenstein series of even weight 𝑘≥2 and integral binary quadratic forms
Authors: Mono Andreas
Published: April 2021

We prove a conjecture of Matsusaka on the analytic continuation of hyperbolic Eisenstein series in weight

2
2

on the full modular group

S
L

2

(

Z

)

\mathrm {SL}_{2}(\mathbb {Z})

.
MAT2: manifold alignment of single-cell transcriptomes with cell triplets
Authors: Zhang Jinglong , Zhang Xu , Wang Ying , Zeng Feng , Zhao Xing-Ming
Published: April 2021

Motivation

Aligning single-cell transcriptomes is important for the joint analysis of multiple single-cell RNA sequencing datasets, which in turn is vital to establishing a holistic cellular landscape of certain biological processes. Although numbers of approaches have been proposed for this problem, most of which only consider mutual neighbors when aligning the cells without taking into account known cell type annotations.

Results

In this work, we present MAT2 that aligns cells in the manifold space with a deep neural network employing contrastive learning strategy. Compared with other manifold-based approaches, MAT2 has two-fold advantages. Firstly, with cell triplets defined based on known cell type annotations, the consensus manifold yielded by the alignment procedure is more robust especially for datasets with limited common cell types. Secondly, the batch-effect-free gene expression reconstructed by MAT2 can better help annotate cell types. Benchmarking results on real scRNA-seq datasets demonstrate that MAT2 outperforms existing popular methods. Moreover, with MAT2, the hematopoietic stem cells are found to differentiate at different paces between human and mouse.

Availability and implementation

MAT2 is publicly available at https://github.com/Zhang-Jinglong/MAT2.

Supplementary information

Supplementary data are available at Bioinformatics online.
A STUDY OF LINKAGE DISEQUILIBRIUM IN POPULATIONS OF DROSOPHILA MELANOGASTER
Authors: Charlesworth Brian , Charlesworth Deborah
Published: April 2021

This paper presents the results of a study of linkage disequilibrium between five polymorphic enzyme genes located on chromosome 3 of D. melamgaster. Three sets of chromosomes were examined: two represented samples from successive years of the same natural population, and one came from a large laboratory population. Out of the thirty possible tests for linkage disequilibrium between pairs of loci, two were significant at the 5% level and two at the 1% level. This result cannot reasonably be ascribed to chance alone. The pairs of loci that had a significant correlation in one sample had higher than average correlations in the other samples (though not necessarily in the same direction); this effect was highly significant statistically. There was no tendency for the high correlations to be associated with tightness of linkage between the loci concerned. All five loci were involved in at least one significant effect. It was concluded that these results are difficult to explain on the neutral allele theory of protein polymorphism, but are consistent with the concept of selective control of allele frequencies.
GENETIC HYBRIDIZATION AT THE UNLINKED THY AND STR LOCI OF STREPTOCOCCUS
Authors: Ravin Arnold W , Chakrabarti Tapan
Published: April 2021

The sanguis and pneumoniae species of Streptococcus were used as recipients in transformations from str  + to str-r and from thy  - to thy  +. The str-r mutations in the two species had been previously shown to be allelic. Homology of the thy  - mutations in the two species was demonstrated in the similar phenotypic properties they conferred (death in the absence of thymidine, lack of thymidylate synthetase). The str and thy loci are unlinked in each species.——When the two species are transformed by both homospecific and heterospecific DNA, the efficiency is always lower in the heterospecific cross. The efficiency of heterospecific transformation is considerably lower at the thy than at the str locus. DNA was extracted from recipients that had integrated markers of heterospecific origin. When such hybrid DNA is tested on the original recipient species, the heterospecific markers are usually as efficient as homospecific markers. When tested on the original donor species, however, the hybrid DNA is usually more efficient than heterospecific DNA. This is true for both thy and str transformations.——Forty independent thy  + hybrids were obtained in the cross of sanguis thy  - recipients with pneumoniae thy  + DNA. These hybrids fall into a number of classes based upon the relative efficiency with which their extracted DNA's are able to transfer the thy  + marker into pneumoniae thy  - cells. The most efficient of these DNA's exhibits about 20% of the efficiency of homospecific pneumoniae thy  + DNA and three orders of magnitude greater efficiency than heterospecific sanguis thy  + DNA. Thus, very little of the inefficiency of heterospecific transformation of the thy locus is ascribable to a classic restriction mechanism. Rather, the wild-type thy  + loci in the two species appear to differ at multiple sites, and independent heterospecific transfers result in differential extents of integration of these sites. On this basis, the thy  + loci of the two species differ at a greater number of sites than do the respective str  + loci.
GENETIC CONTROL OF CHROMOSOME ELIMINATION DURING HAPLOID FORMATION IN BARLEY
Authors: Ho K M , Kasha K J
Published: April 2021

Genetic control over chromosome stability in the interspecific hybrid embryos of Hordeum vulgare and H. bulbosum has been hypothesized to reside on specific chromosomes. In this study, crosses between the primary trisomic lines for the seven different H. vulgare chromosomes and tetraploid H. bulbosum revealed that both chromosomes 2 and 3 of H. vulgare were involved in the control of chromosome elimination. Subsequent crosses using the available monotelotrisomics for chromosomes 2 and 3 led to the conclusion that both arms of chromosome 2 and the short arm of chromosome 3 most likely contain major genetic factors.—From the results of this study and the genome balance observed in the interspecific crosses between H. vulgare and H. bulbosum at the diploid and tetraploid cytotypes, it appears that the factors causing the elimination of the bulbosum chromosomes are located on the H. vulgare chromosome. These factors are offset or balanced by factors on the H. bulbosum chromosomes which, when present in sufficient dosage, either neutralize the effects of the vulgare factors or are able to "protect" the bulbosum chromosomes.
DISTRIBUTION AMONG THE CHROMOSOMES OF DROSOPHILA PSEUDOOBSCURA OF THE GENES GOVERNING THE RESPONSE TO LIGHT
Authors: Dobzhansky Theodosius , Pavlovsky Olga , Andregg Michael
Published: April 2021

Most strains of Drosophila pseudoobscura are neutral to light when tested in phototactic mazes. However, clear-cut photopositive and photonegative populations are obtained by selection over a series of generations. The genetic nature of the difference between the positive and negative populations has been studied in crosses in which the three large autosomes carried mutant markers. All chromosomes contain genes which influence the response to light. The third chromosome has the strongest effect, followed by the second, the X, and the fourth chromosomes. This seriation is not in proportion to the relative lengths of the chromosomes. Either the effective genes are not very numerous, or some of them exert stronger influences than others.
STUDIES ON THE NATURE AND FUNCTION OF POLYGENIC LOCI IN DROSOPHILA. III. VEINLET MODIFIERS HAVING REGION-SPECIFIC EFFECTS UPON THE VEIN PATTERN
Authors: Thompson James N
Published: April 2021

olygenic modifiers affecting the expression of the mutant veinlet were studied to determine whether each acts specifically upon one vein or wing region or whether they affect the venation pattern in some general way. Selection experiments showed that the L4 vein can be modified independently of the L2 and L3 veins. Similarly, the L2 vein can be shortened while the L3 is selected to be longer, although there is some interdependence between the L2 and L3 veins. Assays of heterozygous whole chromosome effects show that different chromosomes are involved in the responses of separate veins, and one polygenic locus causing a decrease in L4 vein length has been isolated. Substitutions of whole chromosomes from selection lines into unselected backgrounds of non-homologous mutants demonstrate that the selected modifiers have the same qualitative effects upon other mutants having similar phenotypes. These results support the hypothesis that the polygenic modifiers affecting veinlet expression function independently of the veinlet locus, presumably by influencing common steps in the developmental processes leading to the formation of individual veins.
NATURAL SELECTION FOR WITHIN-GENERATION VARIANCE IN OFFSPRING NUMBER II. DISCRETE HAPLOID MODELS
Authors: Gillespie John H
Published: April 2021

In the classical model of genetic drift in population genetics theory, use is made of a hypothetical "infinite-gametic pool". If, instead, the gametic pool is determined by the random number of offspring per individual, a new form of natural selection acting on the variance in offspring number occurs. A diffusion model of this selection process is derived and some of its properties are explored. It is shown that, independent of the sampling scheme used, the diffusion equation has the drift coefficient M(p) = p(1-p) (µ1-µ2 + σee2  2- σe e1  2) and the diffusion coefficient v(p) = p(1-σ) [pσee 2  2 + (1-σ)σee1  2]. It is also pointed out that the Direct Product Branching process model of genetic drift introduces a non-biological interaction between individuals and is thus inappropriate for modeling natural selection.
GENETIC ANALYSIS OF REGULATORY MUTANTS OF ALKALINE PHOSPHATASE OF E. COLI
Authors: Kreuzer Kenneth , Pratt Charles , Torriani Annamaria
Published: April 2021

A fine structure map of the phoR region of E. coli, mutations of which affect the rate of alkaline phosphatase synthesis, was constructed by Hfr × F- crosses. Mutations causing three different phenotypes (previously reported as phoRa, phoRb, phoRc (Garen and Echols 1962a, b)) are clustered in three closely linked genetic loci. PhoR mutants of all three types, including the phoRb type not previously tested, are recessive to wild-type phoR+. In addition, phoRa and phoRc complement each other, while phoRa and phoRb do not. Our results support the hypothesis of Morris et al. (1974) that phoRc mutants represent a cistron (phoB) different from phoR.
GENETIC MODIFICATION OF RECOMBINATION RATE IN TRIBOLIUM CASTANEUM
Authors: Dewees Andrew A
Published: April 2021

Asymmetrical responses were obtained in a replicated study of 15 generations of two-way selection for recombination rate between the ruby (rb) and jet (j) loci in Tribolium castaneum. Recombination rates in the two replicate high lines increased from an average of 0.22 in the base populations to an average of 0.42 at generation 15. Recombination rate pooled over the 15 generations of selection in each low line was significantly less than the control but there was no clear downward trend in response to selection for decreased recombination rate. The realized heritabilities were 0.16 ± 0.03 and 0.17 ± 0.02 in the two high lines, and were not significantly different from zero in the two low lines. Selection was based on crossing over in cis females only; however, rates measured in cis males after 12 generations showed the same response patterns as female rates. Similar response patterns were also determined for recombination measured in trans males and females at generation 18 following three generations of relaxed selection. The distribution of recombination rates measured in backcross beetles [(H × L) × H and (H × L) × L] at generation 12 indicated polygenic control with those genes decreasing recombination rate being dominant. Detailed analysis of recombination rates in F1's produced by interline crosses at generation 15 confirmed the directional dominance findings. Under a polygenic model of recombination modifiers in which low recombination is dominant to high, average recombination rates will increase as inbreeding progresses, thus providing a mechanism for the production of new gene combinations in small populations.
ISOLATION AND CHARACTERIZATION OF SEX-LINKED FEMALE-STERILE MUTANTS IN DROSOPHILA MELANOGASTER
Authors: Gans Madeleine , Audit Claudie , Masson Michele
Published: April 2021

The purpose of the experiments described was to identify X chromosome genes functioning mainly or exclusively during oogenesis. Two mutagenesis experiments were carried out with ethyl methane sulfonate. Following treatment inducing 60% lethals, 9% of the treated X chromosomes carried a female sterility mutation which did not otherwise seriously affect viability. Among —95 isolated mutants, 19 were heat-sensitive and 5 cold-sensitive. The mutants have been classified as follows: I (16 mutants; 12 complementation groups): the females laid few or no eggs; the defect concerned either ovulation or oogenesis. II (37 mutants; 18 complementation groups): the female laid morphologically abnormal eggs, often with increased membrane permeability. III A (13 mutants; at least 8 complementation groups): the homozygous females were sterile if mated to mutant males; their progeny (homo- and hemizygous) died at a late embryonic stage (11 mutants), at the larval stage (1 mutant) or at the pupal stage (1 mutant). However fertility was partly restored by breeding to wild-type males as shown by survival of some heterozygous descendants. III B (29 mutants; 22 complementation groups): the fertility of the females was not restored by breeding to a wild-type male. Most of the eggs of 13 of the mutants died at a late stage of embryogenesis. The eggs of the others ceased development earlier or, perhaps, remained unfertilized. The distribution of the number of mutants per complementation group led to an estimation of a total of about 150 X-linked genes involved in female fertility. The females of three mutants, heat-sensitive and totally sterile at 29°, produced at a lower temperature descendants morphologically abnormal or deprived of germ cells. Three other mutants not described in detail showed a reduction in female fertility with many descendants lacking germ cells. A desirable mutant which was not recovered was one with normal fertile females producing descendants which, regardless of their genotype, bore specific morphological abnormalities. The value of the mutants isolated for analysis of the complex processes leading to egg formation and initiation of development is discussed.
MUTANTS OF THE KILLER PLASMID OF SACCHAROMYCES CEREVISIAE DEPENDENT ON CHROMOSOMAL DIPLOIDY FOR EXPRESSION AND MAINTENANCE
Authors: Wickner Reed B
Published: April 2021

Mutants of the killer plasmid of Saccharomyecs cerevisiaehave been isolated that depend upon chromosomal diploidy for the expression of plasmid functions and for replication or maintenance of the plasmid itself. These mutants are not defective in any chromosomal gene needed for expression or replication of the killer plasmid.—Haploids carrying these mutant plasmids (called d for diploid-dependent) are either unable to kill or unable to resist being killed or both and show frequent loss of the plasmid. The wild-type phenotype (K+R+) is restored by mating the d plasmid-carrying strain with either (a) a wild-type sensitive strain which apparently has no killer plasmid; (b) a strain which has been cured of the killer plasmid by growth at elevated temperature; (c) a strain which has been cured of the plasmid by growth in the presence of cycloheximide; (d) a strain which has lost the plasmid because it carries a mutation in a chromosomal mak gene; or (e) a strain of the opposite mating type which carries the same d plasmid and has the same defective phenotype, indicating that the restoration of the normal phenotype is not due to recombination between plasmid genomes or complementation of plasmid or chromosomal genes.—Sporulation of the phenotypically K+R+ diploids formed in matings between d and wild-type nonkiller strains yields tetrads, all four of whose haploid spores are defective for killing or resistance or maintenance of the plasmid or a combination of these. Every defective phenotype may be found among the segregants of a single diploid clone carrying a d plasmid. These defective segregants resume the normal killer phenotype in the diploids formed when a second round of mating is performed, and the segregants from a second round of meiosis and sporulation are again defective.
A GENETIC STUDY OF AGGREGATION IN THE CELLULAR SLIME MOULD DICTYOSTELIUM DISCOIDEUM USING COMPLEMENTATION ANALYSIS
Authors: Williams Keith L , Newell Peter C
Published: April 2021

A series of aggregation-deficient (aggregateless) mutants were isolated in genetically marked haploid strains of the cellular slime mould Dictyostelium discoideum. Diploids were produced from pairs of such haploid mutants by a fusion system based on this organism's parasexual cycle. The diploids were isolated from the haploids by using complementation of non-allelic growth-temperature-sensitive mutations and selection at the restrictive temperature. Complementation between the aggregateless mutations was then assessed in 419 diploids so formed. The non-complementing aggregateless mutations fell into five complementation groups (agoA, B, C, D and E) and a dominant aggregation class that allowed little or no aggregation when present in a diploid with any of the other mutations tested or the parental wild type. Complicating factors, including partial dominance, multiple mutations, and possible interallelic complementation, are discussed. Data on the linkage of the aggregateless mutations was obtained by using recessive drug resistance mutations on three linkage groups to segregate haploids from the diploids. Calculations from our results suggest a genetic complexity of about 50 genes that are specific and essential for aggregation.
DISPLACED AND TANDEM DUPLICATIONS IN THE LONG ARM OF CHROMOSOME 10 IN MAIZE
Authors: Dooner H K , Kermicle J L
Published: April 2021

Lc, an anthocyanin pigmenting factor mapping somewhat more than one unit distal to R, is borne on a chromosomal segment which is homologous with part of the R-r:standard duplicated segment. Deficiencies and tandem duplications of the R to Lc region arise from exchanges within these obliquely paired homologous segments. The deficiencies are transmitted with a high, although reduced, frequency by the male gametophyte and are homozygous viable. Yet, the R to Lcregion is not duplicated either proximal to R or distal to Lc. Thus the Lc-marked segment and either the P- or the S-marked segment of R-r constitute a displaced duplication. Such an arrangement can initiate a tandem and displaced duplication cycle.——No evidence was obtained for fractionation of the compound phenotype conditioned by Lc.
GENETICS OF NATURAL POPULATIONS. XLIII. FURTHER STUDIES ON RATES OF DISPERSAL OF DROSOPHILA PSEUDOOBSCURA AND ITS RELATIVES
Authors: Powell Jeffrey R , Dobzhansky Theodosius , Hook James E , Wistrand Harry E
Published: April 2021

The amount of gene flow among local populations of a species is determined by the dispersal capacity of that species. Population samples of Drosophila pseudoobscura, D. persimilis, D. azteca, and D. miranda were collected, marked with ultraviolet fluorescent dusts, and released as soon as possible after capture. One and two days after release, recaptures were made on baits placed at 40-meter intervals in straight lines intersecting the release point. On alternative days, the baits were placed in North-South or in East-West directions. The distribution of the recaptured flies about the release point is very nearly normal. No significant differences between the dispersal rates of the four species are observed; however, males disperse slightly further than females. The variances averaged 50,822 m2 on the first day and 80,048 m2 on the second day and the estimated mean distances from the release point averaged 263 m and 361 m respectively. The genetic implications of the results are discussed.
SUBSTRATE-SPECIFIC ENZYME VARIATION IN NATURAL POPULATIONS OF DROSOPHILA PSEUDOOBSCURA
Authors: Singh Rama S
Published: April 2021

By using a number of different alcohols as substrates, eight alcohol dehydrogenase loci were discovered in Drosophila pseudoobscura. Each of these loci can take more than one substrate. Several of these loci differed in their tissue specificities and activity patterns during development. The genic variation in natural populations was studied at four of these loci and three of them were polymorphic. A quantitative study of substrate-specific differences among alleles of the same locus produced negative results. This result appears to be typical of most studies done on this aspect. From this it was concluded that the substrate specificity for enzymes is not an important factor in determining the greater amount of genic variation at Group II loci than at Group I loci, as proposed by Kojima, Gillespie and Tobari (1970). There are several observations which suggest a different explanation for the differences in the genic variability at Group I and Group II loci: (1) There are, on an average, more isozyme loci (loci with similar substrate specificity) for enzymes in Group II than in Group I; (2) The null alleles are far more common at Group II loci than at Group I loci; (3) There is significant heterogeneity in the number of alleles and the heterozygosities at loci within each of these two groups of enzymes; (4) Relatively higher levels of genic variation are observed at Group II loci even in populations which appear to be living in homogeneous environments; and (5) Some loci (e.g. esterases) are highly polymorphic in most species investigated by gel electrophoresis techniques. Based on these general observations, it is proposed that (1) the substrate-specific differences are between isozyme loci and not between alleles of a given locus, and (2) neutral alleles are proportionately far more common at loci at Group II than at loci in Group I, because the former is under less selection constraint than the latter.
EVIDENCE FOR COADAPTATION: NEGATIVE CORRELATION BETWEEN LETHAL GENES AND POLYMORPHIC INVERSIONS IN DROSOPHILA MELANOGASTER
Authors: Watanabe Takao K , Yamazaki Tsuneyuki
Published: April 2021

Through examination of all available data on lethal and inversion frequencies on the second chromosome in natural populations of Drosophila melanogaster, we have discovered that there is a clear negative correlation between the two quantities. Lethal genes are located more densely on the regions of standard gene arrangement than the inverted regions, and this accounts for the negative correlation. To reveal the underlying mechanism of the phenomena, we have carried out an experiment and found that effect of EMS-induced mutations on the inversion-carrying chromosome is more severe than that on the standard chromosome. We interpret these results as evidence for coadaptation or position-effect within the inversion chromosomes. New mutations within the coadapted gene complex are quickly eliminated from the population and polymorphic inversions are kept free of mutants through selective elimination.
SELECTION IN REFERENCE TO BIOLOGICAL GROUPS. V. ANALYSIS OF FULL-SIB GROUPS
Authors: Griffing B
Published: April 2021

Previous studies in this series have dealt with the consequences of truncation selection operating with respect to random groups within which geno-full-sib group structure. The objective is to compare the results of individual and group selection as these methods operate on populations of random versus typic interaction may exist. The present study deal with a non-random, full-sib groups. In almost all comparisons individual selection is found to be qualitatively and quantitatively superior when used in conjunction with full-sib groups. This is due to the fact that the change in gene frequency for full-sib groups is a function of both direct and associate effects, whereas with random groups it is a function of direct effects only. With regard to group selection the efficiency is invariably superior when selection operates on non-random, full-sib rather than random groups.
NON-MENDELIAN FEMALE STERILITY IN DROSOPHILA MELANOGASTER: HEREDITARY TRANSMISSION OF I FACTOR
Authors: Picard G
Published: April 2021

Systematic crosses between various strains of Drosophila melanogaster lead in some cases to partly sterile F1 females. Two main classes of strains, inducer and reactive, may be recognized on the basis of the fertility of F1 female progeny. Females which may show incomplete sterility (SF ♀) arise only when reactive females are crossed with inducer males, other crosses, including the reciprocal, producing only fertile F1 females.

SF sterility appears as the result of an interaction between two factors, R brought into the initial cross by the reactive mother and maternally inherited, and I brought by the inducer father. The present paper reports on the hereditary transmission of I factor. It is shown that when transmitted through heterozygous males, bearing chromosomes of both inducer and reactive origin, I factor may be strictly linked to any one of the three major chromosomes of inducer strains. Such chromosomes carrying I factor were called inducer chromosomes. When transmitted through heterozygous females, this Mendelian behavior fails to hold, and non-inducer chromosomes coming from reactive strains may become inducer independently of the production of recombined gametes. This phenomenon was called chromosomal contamination. This contamination occurs even between nonhomologous chromosomes.
THE DISTRIBUTION OF ENZYME AND INVERSION POLYMORPHISM OVER THE GENOME OF DROSOPHILA: EVIDENCE AGAINST BALANCING SELECTION
Authors: Zouros E
Published: April 2021

In species of the repleta group of Drosophila about 70% of the electrophoretic variability is absorbed by the same chromosome which absorbs about 70% of the cytological variability of the group. However, this does not imply that inversions are actively involved in the maintenance of protein variation. A comparison of cytological and electrophoretic variation of homologous chromosomes points out that the amount of cytological polymorphism varies greatly over species of Drosophila while electrophoretic variation does not. This suggests that allelozymes do not constitute part of the coadapted complexes of genes characterizing the inversions. Rather, the amount of electrophoretic variation is determined by properties intrinsic to the polypeptide molecule and is largely independent of factors such as background genotype and differences in the environment.
RECOMBINATION MODIFICATION IN A FLUCTUATING ENVIRONMENT
Authors: Charlesworth Brian
Published: April 2021

This paper examines the theory of the evolution of increased recombination between two loci subjected to interactive selection in a temporally fluctuating environment. Both cyclical and stochastic environments are considered. It is shown that temporal variation in the linkage disequilibrium coefficient for the pair of selected loci, due to fluctuations in the selective values of the genotypes at these loci, can give rise to selection in favor of modifier genes increasing recombination. The equilibrium level of recombination established in a given population depends on several factors; it is highest for intermediate values of the environmental periodicity or autocorrelation, for cases when the modifier genes are themselves closely linked to the selected loci, and for high levels of environmental variation. In general, it seems that the rate of modification of recombination values by this process will be low except when the modifiers are tightly linked to the selected loci. The possible evolutionary significance of this process is discussed in relation to observations on genetic systems of plants and animals.
CHROMOSOME REARRANGEMENTS IN CAENORHABDITIS ELEGANS
Authors: Herman Robert K , Albertson Donna G , Brenner Sydney
Published: April 2021

A method for selecting unlinked duplications of a part of the X chromosome of C. elegans is described. Five such duplications have been identified. One of them, Dp(X;V)1, is translocated to linkage group V, where it suppresses crossing over along the left half of linkage group V. Dp(X;V)1 homozygotes grow slowly and are sterile. The other four duplications are associated with chromosome fragments, as observed cytologically by fluorescence microscopy, and tend to be lost. Their frequency of loss is higher in strains homozygous for a mutation that promotes nondisjunction of X chromosomes. The recombination frequencies between two of these duplications and the X have been measured: the frequencies are at least 50 times less than for X-X recombination in the same region. The duplications may prove useful as balancers of recessive lethal mutations.
CHLOROPLAST GENETICS OF CHLAMYDOMONAS. II. MAPPING BY COSEGREGATION FREQUENCY ANALYSIS
Authors: Sager Ruth , Ramanis Zenta
Published: April 2021

This paper presents segregation and cosegregation data for a set of 15 chloroplast genes of Chlamydomonas, and uses these data to generate a linear map of the chloroplast genome. The data were derived from pedigree analysis of a total of 1596 zoospore clones resulting from 12 crosses in each of which 4 to 7 pairs of chloroplast alleles were segregating. The crosses are a subset of those previously described (Sager and Ramanis 1976). By means of pedigree analysis, Type II segregations (nonreciprocal conversion-like events) were distinguished from Type III segregations (reciprocal events). The average frequency of Type II segregation was found to be the same for all 15 genes, indicating randomness of this event with respect to map location (Figure 1). Type III segregations occurred with a different and characteristic frequency for each gene, and were interpreted as a measure of the distance of each gene from the postulated centromere-like attachment point.

Cosegregations, involving two or more genes, occurred with frequencies characteristic of the particular genes and much lower than expected for the product of single-gene events, indicating strong positive interference. Pairwise cosegregation frequencies provided unambiguous data for the gene order, confirmed by cosegregation runs of three or more genes. Apparent lengths of cosegregation runs, as fractions of the total map, indicate much longer stretches of gene conversion-like events than have been reported for other genetic systems. Comparisons of cosegregation frequencies in cross 20 after 15˝, 30˝ and 15˝ UV irradiation of the mt  + before mating, indicate little if any consistent effect of this irradiation on segregation events.
MUTATOR ACTIVITY OF PETITE STRAINS OF SACCHAROMYCES CEREVISIAE
Authors: Flury Fred , von Borstel R C , Williamson D H
Published: April 2021

Petite strains in Saccharomyces exhibit enhanced spontaneous mutation rates of nuclear genes regardless of whether they are cytoplasmically or nuclearly inherited, or whether or not the cytoplasmic petite strains have mitochondrial DNA. In petite strains, the mutation rate for the nonsense allele lys1-1 is enhanced by a factor of 3-6 and for the missense allele his1-7 by a factor of 2 as compared with their grande counterparts. The reversion of a third allele, the putative frameshift mutation, hom3-10, is not enhanced in a petite background. The results indicate that the spontaneous mutation rate of an organism can be altered by indirect intracellular influences.
MAPPING OF TRICHODERMIN RESISTANCE IN SACCHAROMYCES CEREVISIAE: A GENETIC LOCUS FOR A COMPONENT OF THE 60S RIBSOMAL SUBUNIT
Authors: Grant Paul G , Schindler Daniel , Davies Julian E
Published: April 2021

Resistance to the protein synthesis inhibitor trichodermin in Saccharomyces cerevisiae has been studied. A single recessive nuclear gene was responsible for resistance. The resistance locus, tcm1 was found to be closely linked (1 centimorgan) to the locus pet 17 on the right arm of chromosome XV. The mutation to trichodermin resistance conferred resistance to other 12,13-epoxytrichothecenes and to the structurally unrelated antibiotic anisomycin.
INTRAGENIC RECOMBINATION IN MAIZE: POLLEN ANALYSIS METHODS AND THE EFFECT OF PARENTAL Adh1
+ ISOALLELES
Authors: Freeling Michael
Published: April 2021

The ability to stain mature pollen grains for the presence of alcohol dehydrogenase (ADH) activity permits the quantitation of ADH+ gametophytes at frequencies below 10-6. This resolution allows reversion and genetic fine structure analyses. The rationale of pollen analysis follows Nelson's prototype studies with waxy. As with the waxy gene, revertant frequencies for seven Adh1-deficient (Adh1  -) alleles appear to be in excess of microbially derived expectations. Each of the seven Adh1  - alleles were derived from one of three naturally occurring isoalleles. Based on Schwartz's protein level characterizations of the mutants' products, it was anticipated that the seven Adh1  - alleles should recombine to yield ADH+ cistrons in certain pairwise combinations. This expectation was not met. The parental "wild-type" isoalleles from which the mutants were derived appear to be structurally divergent. The discussion interprets these data in view of understanding naturally occurring cistronic variation.
GENETIC ANALYSIS OF THE CENTROMERIC HETEROCHROMATIN OF CHROMOSOME 2 OF DROSOPHILA MELANOGASTER: DEFICIENCY MAPPING OF EMS-INDUCED LETHAL COMPLEMENTATION GROUPS
Authors: Hilliker Arthur J
Published: April 2021

Until recently, little was known of the genetic constitution of the heterochromatic segments of the major autosomes of Drosophila melanogaster. Our previous report described the genetic dissection of the proximal, heterochromatic region of chromosome 2 of Drosophila melanogasterby means of a series of overlapping deficiencies generated by the detachment of compound second autosomes (Hilliker and Holm 1975). Analysis of these deficiencies by inter se complementation, pseudo-dominance tests with proximal mutations and allelism tests with known deficiencies provided evidence for the existence of at least two loci between the centromere and the light locus in 2L and one locus in 2R between the rolled locus and the centromere. These data in conjunction with cytological observations demonstrated that light and rolled and three loci lying between them are located within the proximal heterochromatin of the second chromosome.——The present report describes the further analysis of this region through the induction with ethyl methanesulphonate (EMS) of recessive lethals allelic to the 2L and 2R proximal deficiencies associated with the detachment products. Analysis of the 118 EMS-induced recessive lethals and visible mutations recovered provided evidence for seven loci in the 2L heterochromatin and six loci in the 2R heterochromatin, with multiple alleles being obtained for most sites. Of these loci, one in 2L and two in 2R fall near the heterochromatic-euchromatic junctions of 2L and 2R respectively. None of the 113 EMS lethals behaved as a deficiency, implying that the heterochromatic loci uncovered in this study represent nonrepetitive cistrons. Thus functional genetic loci are found in heterochromatin, albeit at a very low density relative to euchromatin.
DYNAMICS OF CORRELATED GENETIC SYSTEMS. I. SELECTION IN THE REGION OF THE GLUED LOCUS OF DROSOPHILA MELANOGASTER
Authors: Clegg M T , Kidwell J F , Kidwell M G , Daniel N J
Published: April 2021

The dynamical behavior of chromosomal segments undergoing strong selection was investigated in four replicate populations of Drosophila melanogaster. This was accomplished by following the joint behavior of allozyme markers at the loci phosphoglucomutase and esterase C, adjacent to the recessive lethal locus Glued, during and following the course of selection against Glued. The results show strong selection at other loci in the region of the marked segment. Examination of the joint dynamic of the two markers indicates that there must be more than one, and probably several, selected loci in the region under observation, with large epistatic effects. The mode of selection on the segment often results in excess heterozygosity at the markers, but does not appear to be constant in time. It is concluded that the density of selective effects in the region under study is substantial.
ORGANIZATION OF THE ROSY LOCUS IN DROSOPHILA MELANOGASTER: EVIDENCE FOR A CONTROL ELEMENT ADJACENT TO THE XANTHINE DEHYDROGENASE STRUCTURAL ELEMENT
Authors: Chovnick A , Gelbart W , McCarron M , Osmond B , Candido E P M , Baillie D L
Published: April 2021

From a collection of electrophoretic variants of XDH obtained from laboratory strains and natural populations, a stock was isolated that was associated with much greater than normal levels of XDH activity. Preliminary recombination experiments demonstrated that this character maps to the rosy locus. While a series of observations failed to relate this phenotype to alteration in the structure of the XDH polypeptide, kinetic and immunological experiments did succeed in associating this character with variation in number of molecules of XDH/fly. Large scale fine structure recombination experiments locate the genetic basis for this variation in number of molecules of XDH/fly to a site very close to, but definitely outside of, the genetic boundaries of the XDH structural information. Observations are described which eliminate the possibility that we are dealing with a tandem duplication of the XDH structural element. Turning to a regulatory role for this genetic element located adjacent to the XDH structural information, a simple experiment is described which demonstrates that it functions as a "cis-acting" regulator of the XDH structural element.
STUDIES ON THE SEX-SPECIFIC LETHALS OF DROSOPHILA MELANOGASTER. II. FURTHER STUDIES ON A MALE-SPECIFIC LETHAL GENE, MALELESS
Authors: Tanaka Atsumi , Fukunaga Akihiro , Oishi Kugao
Published: April 2021

Effects of a second chromosome male-specific lethal gene, maleless (mle), of Drosophila melanogaster were further studied. It was shown that, although no maternal effect was seen with respect to the male-specific lethality, the lethal stage was influenced by whether parental females were homozygous or heterozygous for mle. Thus, in the former mle/mle males died mostly in the late third instar larval stage, while in the latter practically all males survived to the pupal stage. In the dying mle/mle male pupae complete differentiation of adult external head and thorax structures was often observed but that of abdominal structures was incomplete forming only a few segments in most cases. Imaginal discs from third instar mle/mle male larvae which were produced by mle/mle mothers and were destined to die as larvae were able to differentiate into adult structures upon transplantation into normal third instar larval hosts.—A somewhat elaborated version of the previously presented hypothesis (Fukunaga, Tanaka and Oishi 1975) was discussed as to the possible presence of a class of sex-specific lethals which are not related to the process of primary sex differentiation
DELETION AND AMBER MUTANTS OF fla LOCI IN ESCHERICHIA COLI K-12
Authors: Kondoh Hisato , Ozeki Haruo
Published: April 2021

A rapid screening method for amber fla mutants of E. coli was devised and many mutants were obtained. In addition, strains with deletions of the fla genes in the his-uvrC region were isolated from high-temperature survivors of a λcI857 lysogen in which the prophage is located between his and fla. Utilizing these mutants, eleven fla genes (I-XI) and one hag gene were identified in the his-uvrc region, in the following order: his-supD-I-II-(III, IV)-V-(VI, VII)-VIII-IX-hag-(X, XI)-uvrC. The fla genes X and XI and hag are located at about 42.5 min and the other fla genes at about 43.0 min on the E. coli genetic map (Bachmann, Low and Taylor 1976). Mutants of fla gene X showed a slight sensitivity to chi phage, although they lack the flagellar filament.
ORIENTATION DISRUPTOR (ord): A RECOMBINATION-DEFECTIVE AND DISJUNCTION-DEFECTIVE MEIOTIC MUTANT IN DROSOPHILA MELANOGASTER
Authors: Mason James M
Published: April 2021

The effects of a semidominant autosomal meiotic mutant, orientation disruptor (symbol: ord), located at 2-103.5 on the genetic map and in region 59B-D of the salivary map, have been examined genetically and cytologically. The results are as follows. (1) Crossing over in homozygous females is reduced to about seven percent of controls on all chromosomes, with the reduction greatest in distal regions. (2) Crossing over on different chromosomes is independent. (3) Reductional nondisjunction of any given chromosome is increased to about thirty percent of gametes from homozygous females. The probability of such nondisjunction is the same among exchange and nonexchange tetrads with the exception that a very proximal exchange tends to regularize segregation. (4) Equational nondisjunction of each chromosome is increased to about ten percent of gametes in homozygous females; this nondisjunction is independent of exchange. (5) The distributive pairing system is operative in homozygous females. (6) In homozygous males, reductional nondisjunction of each chromosome is increased to about ten percent, and equational nondisjunction to about twenty percent, of all gametes. (7) Cytologically, two distinct meiotic divisions occur in spermatocytes of homozygous males. The first division looks normal although occasional univalents are present at prophase I and a few lagging chromosomes are seen at anaphase I. However, sister chromatids of most chromosomes have precociously separated by metaphase II. Possible functions of the ord+ gene are considered.
LACK OF GENIC SIMILARITY BETWEEN TWO SIBLING SPECIES OF DROSOPHILA AS REVEALED BY VARIED TECHNIQUES
Authors: Coyne Jerry A
Published: April 2021

Acrylamide gel electrophoresis was performed on the enzyme xanthine dehydrogenase in sixty isochromosomal lines of Drosophila persimilis from three geographic populations. Sequential electrophoretic analysis using varied gel concentrations and buffers revealed twenty-three alleles in this species where only five had been described previously. These new electrophoretic techniques also detected a profound increase in divergence of gene frequencies at this locus between D. persimilis and its sibling species D. pseudoobscura. The implications of these results for questions of speciation and the maintenance of genetic variability are discussed.
THE EFFECT OF LEVEL OF HETEROZYGOSITY ON THE PERFORMANCE OF HYBRIDS BETWEEN ISOGENIC LINES OF BARLEY
Authors: Zali A A , Allard R W
Published: April 2021

Sixteen "isogenic" lines of Atlas 46 barley differing in one to four short chromosome segments, and 16 heterozygotes obtained by crossing these lines to male-sterile Atlas, were used to study the effect of level of heterozygosity on performance. In field tests conducted in four environments (two planting dates in two years) significant differences were found among the homozygous isogenic lines for the traits seed yield, kernel weight, tiller number, plant height, and heading time; thus each of the marked chromosome segments carries genes which, when homozygous, affect these quantitative characters. It was also found that heterozygotes produced more and heavier kernels and were taller and earlier than homozygotes but there was no clear indication that the degree of heterosis increased as the number of heterozygous segments increased from one to five. Degree of heterosis was, however, strongly affected by the environment, by allelic state at each segment (especially the segment marked by the two-row, six-row spike locus), and also by genotype for other marked segments. These results indicate that heterosis in barley has a more complex structure than can be adequately represented by simple models, such as the multiplicative model in which fitnesses are the product of fitnesses at individual loci, or threshold models in which optimum fitness is approached asymptotically as the number of heterozygous loci increases.