bluuebunny/crossref_metadata_2025 huggingface dataset:
Identification of novel androgen-responsive genes by sequencing of LongSAGE libraries
Authors: Romanuik Tammy L , Wang Gang , Holt Robert A , Jones Steven JM , Marra Marco A , Sadar Marianne D
Published: October 2009

Background

The development and maintenance of the prostate is dependent on androgens and the androgen receptor. The androgen pathway continues to be important in prostate cancer. Here, we evaluated the transcriptome of prostate cancer cells in response to androgen using long serial analysis of gene expression (LongSAGE) libraries.

Results

There were 131 tags (87 genes) that displayed statistically significant (p ≤ 0.001) differences in expression in response to androgen. Many of the genes identified by LongSAGE (35/87) have not been previously reported to change expression in the direction or sense observed. In regulatory regions of the promoter and/or enhancer regions of some of these genes there are confirmed or potential androgen response elements (AREs). The expression trends of 24 novel genes were validated using quantitative real time-polymerase chain reaction (qRT-PCR). These genes were: ARL6IP5, BLVRB, C19orf48, C1orf122, C6orf66, CAMK2N1, CCNI, DERA, ERRFI1, GLUL, GOLPH3, HM13, HSP90B1, MANEA, NANS, NIPSNAP3A, SLC41A1, SOD1, SVIP, TAOK3, TCP1, TMEM66, USP33, and VTA1. The physiological relevance of these expression trends was evaluated in vivo using the LNCaP Hollow Fibre model. Novel androgen-responsive genes identified here participate in protein synthesis and trafficking, response to oxidative stress, transcription, proliferation, apoptosis, and differentiation.

Conclusion

These processes may represent the molecular mechanisms of androgen-dependency of the prostate. Genes that participate in these pathways may be targets for therapies or biomarkers of prostate cancer.
Comprehensive analysis of the pseudogenes of glycolytic enzymes in vertebrates: the anomalously high number of GAPDH pseudogenes highlights a recent burst of retrotrans-positional activity
Authors: Liu Yuen-Jong , Zheng Deyou , Balasubramanian Suganthi , Carriero Nicholas , Khurana Ekta , Robilotto Rebecca , Gerstein Mark B
Published: October 2009

Background

Pseudogenes provide a record of the molecular evolution of genes. As glycolysis is such a highly conserved and fundamental metabolic pathway, the pseudogenes of glycolytic enzymes comprise a standardized genomic measuring stick and an ideal platform for studying molecular evolution. One of the glycolytic enzymes, glyceraldehyde-3-phosphate dehydrogenase (GAPDH), has already been noted to have one of the largest numbers of associated pseudogenes, among all proteins.

Results

We assembled the first comprehensive catalog of the processed and duplicated pseudogenes of glycolytic enzymes in many vertebrate model-organism genomes, including human, chimpanzee, mouse, rat, chicken, zebrafish, pufferfish, fruitfly, and worm (available at http://pseudogene.org/glycolysis/). We found that glycolytic pseudogenes are predominantly processed, i.e. retrotransposed from the mRNA of their parent genes. Although each glycolytic enzyme plays a unique role, GAPDH has by far the most pseudogenes, perhaps reflecting its large number of non-glycolytic functions or its possession of a particularly retrotranspositionally active sub-sequence. Furthermore, the number of GAPDH pseudogenes varies significantly among the genomes we studied: none in zebrafish, pufferfish, fruitfly, and worm, 1 in chicken, 50 in chimpanzee, 62 in human, 331 in mouse, and 364 in rat. Next, we developed a simple method of identifying conserved syntenic blocks (consistently applicable to the wide range of organisms in the study) by using orthologous genes as anchors delimiting a conserved block between a pair of genomes. This approach showed that few glycolytic pseudogenes are shared between primate and rodent lineages. Finally, by estimating pseudogene ages using Kimura's two-parameter model of nucleotide substitution, we found evidence for bursts of retrotranspositional activity approximately 42, 36, and 26 million years ago in the human, mouse, and rat lineages, respectively.

Conclusion

Overall, we performed a consistent analysis of one group of pseudogenes across multiple genomes, finding evidence that most of them were created within the last 50 million years, subsequent to the divergence of rodent and primate lineages.
The VEGF -634G>C promoter polymorphism is associated with risk of gastric cancer
Authors: Guan Xiaoxiang , Zhao Hui , Niu Jiangong , Tang Dongfeng , Ajani Jaffer A , Wei Qingyi
Published: October 2009

Background

Both TGF-β1 and VEGF play a critic role in the multiple-step process of tumorgenesis of gastric cancer. Single nucleotide polymorphisms (SNPs) of theTGFB1andVEGFgenes have been associated with risk and progression of many cancers. In this study, we investigated the association between potentially functional SNPs of these two genes and risk of gastric cancer in a US population.

Methods

The risk associated with genotypes and haplotypes of fourTGFB1SNPs and fourVEGFSNPs were determined by multivariate logistic regression analysis in 171 patients with gastric cancer and 353 cancer-free controls frequency-matched by age, sex and ethnicity.

Results

Compared with theVEGF-634GG genotype, the -634CG genotype and the combined -634CG+CC genotypes were associated with a significantly elevated risk of gastric cancer (adjusted OR = 1.88, 95% CI = 1.24-2.86 and adjusted OR = 1.56, 95% CI = 1.07-2.27, respectively). However, none of otherTGFB1andVEGFSNPs was associated with risk of gastric cancer.

Conclusion

Our data suggested that theVEGF-634G>C SNP may be a marker for susceptibility to gastric cancer, and this finding needs to be validated in larger studies.
Hypomethylation and expression of BEX2, IGSF4 and TIMP3 indicative of MLL translocations in Acute Myeloid Leukemia
Authors: Röhrs Sonja , Dirks Wilhelm G , Meyer Claus , Marschalek Rolf , Scherr Michaela , Slany Robert , Wallace Andrew , Drexler Hans G , Quentmeier Hilmar
Published: October 2009

Background

Translocations of the Mixed Lineage Leukemia (MLL) gene occur in a subset (5%) of acute myeloid leukemias (AML), and in mixed phenotype acute leukemias in infancy - a disease with extremely poor prognosis. Animal model systems show that MLL gain of function mutations may contribute to leukemogenesis. Wild-type (wt) MLL possesses histone methyltransferase activity and functions at the level of chromatin organization by affecting the expression of specific target genes. While numerous MLL fusion proteins exert a diverse array of functions, they ultimately serve to induce transcription of specific genes. Hence, acute lymphoblastic leukemias (ALL) with MLL mutations (MLL mu) exhibit characteristic gene expression profiles including high-level expression of HOXA cluster genes. Here, we aimed to relate MLL mutational status and tumor suppressor gene (TSG) methylation/expression in acute leukemia cell lines.

Results

Using MS-MLPA (methylation-specific multiplex ligation-dependent probe amplification assay), methylation of 24 different TSG was analyzed in 28 MLL mu and MLL wt acute leukemia cell lines. On average, 1.8/24 TSG were methylated in MLL mu AML cells, while 6.2/24 TSG were methylated in MLL wt AML cells. Hypomethylation and expression of the TSG BEX2, IGSF4 and TIMP3 turned out to be characteristic of MLL mu AML cell lines. MLL wt AML cell lines displayed hypermethylated TSG promoters resulting in transcriptional silencing. Demethylating agents and inhibitors of histone deacetylases restored expression of BEX2, IGSF4 and TIMP3, confirming epigenetic silencing of these genes in MLL wt cells. The positive correlation between MLL translocation, TSG hypomethylation and expression suggested that MLL fusion proteins were responsible for dysregulation of TSG expression in MLL mu cells. This concept was supported by our observation that Bex2 mRNA levels in MLL-ENL transgenic mouse cell lines required expression of the MLL fusion gene.

Conclusion

These results suggest that the conspicuous expression of the TSG BEX2, IGSF4 and TIMP3 in MLL mu AML cell lines is the consequence of altered epigenetic properties of MLL fusion proteins.
Lactobacillus casei modulates the inflammation-coagulation interaction in a pneumococcal pneumonia experimental model
Authors: Haro Cecilia , Villena Julio , Zelaya Hortensia , Alvarez Susana , Agüero Graciela
Published: October 2009

Background

We have previously demonstrated that Lactobacillus casei CRL 431 administration improved the resistance to pneumococcal infection in a mouse model.

Methods

This study examined the effects of the oral administration of Lactobacillus casei CRL 431 (L. casei) on the activation of coagulation and fibrinolytic systems as well as their inhibitors during a Streptococcus pneumoniae infection in mice.

Results

The alveolo-capillary membrane was damaged and the coagulation system was also activated by the infection. As a consequence, we could see fibrin(ogen) deposits in lung histological slices, increased levels of thrombin-antithrombin complex (TATc) in bronchoalveolar lavage (BAL) and plasma, decrease in prothrombin activity (PT) and prolonged activated partial thromboplastin time test (APTT) values. Factor VII (FVII) and factor X (FX) were decreased in plasma, whereas fibrinogen (F) and factor VIII (FVIII) were increased. The low levels of protein C (PC) in BAL and plasma proved damage on inhibitory activity. The infected animals showed reduced fibrinolytic activity, evidenced by an increase in plasminogen activation inhibitor-1 (PAI-1) in BAL and plasma. The pathogen induced an increase of TNF-α, IL-1β and IL-6 in BAL and serum a few hours after challenge followed by a significant decrease until the end of the assayed period. IL-4 and IL-10 in BAL and serum were also augmented, especially at the end of the experiment. The animals treated with L. casei showed an improvement of alveolo-capillary membrane, lower fibrin(ogen) deposits in lung and decrease in TATc. APTT test and PT, FVII and FX activity were normalized. L. casei group showed lower F levels than control during whole experiment. In the present study no effect of L. casei on the recovery of the inhibitory activity was detected. However, L. casei was effective in reducing PAI-1 levels in BAL and in increasing anti-inflammatory ILs concentration.

Conclusion

L. casei proved effective to regulate coagulation activation and fibrinolysis inhibition during infection, leading to a decrease in fibrin deposits in lung. This protective effect of L. casei would be mediated by the induction of higher levels of IL-4 and IL-10 which could regulate the anti-inflammatory, procoagulant and antifibrinolytic effects of TNF-α, IL-1β and IL-6.
Herpes simplex virus type 2 tegument protein UL56 relocalizes ubiquitin ligase Nedd4 and has a role in transport and/or release of virions
Authors: Ushijima Yoko , Goshima Fumi , Kimura Hiroshi , Nishiyama Yukihiro
Published: October 2009

Background

The ubiquitin system functions in a variety of cellular processes including protein turnover, protein sorting and trafficking. Many viruses exploit the cellular ubiquitin system to facilitate viral replication. In fact, herpes simplex virus (HSV) encodes a ubiquitin ligase (E3) and a de-ubiquitinating enzyme to modify the host's ubiquitin system. We have previously reported HSV type 2 (HSV-2) tegument protein UL56 as a putative adaptor protein of neuronal precursor cell-expressed developmentally down-regulated 4 (Nedd4) E3 ligase, which has been shown to be involved in protein sorting and trafficking.

Results

In this study, we visualized and characterized the dynamic intracellular localization of UL56 and Nedd4 using live-cell imaging and immunofluorescence analysis. UL56 was distributed to cytoplasmic vesicles, primarily to the trans-Golgi network (TGN), and trafficked actively throughout the cytoplasm. Moreover, UL56 relocalized Nedd4 to the vesicles in cells transiently expressing UL56 and in cells infected with HSV-2. We also investigated whether UL56 influenced the efficiency of viral replication, and found that extracellular infectious viruses were reduced in the absence of UL56.

Conclusion

These data suggest that UL56 regulates Nedd4 and functions to facilitate the cytoplasmic transport of virions from TGN to the plasma membrane and/or release of virions from the cell surface.
Minimally invasive application of botulinum toxin A in patients with idiopathic rhinitis
Authors: Rohrbach Saskia , Junghans Katharina , Köhler Sibylle , Laskawi Rainer
Published: October 2009

Background

Nasal hypersecretion due to idiopathic rhinitis can often not be treated sufficiently by conventional medication. Botulinum toxin A (BTA) has been injected into the nasal mucosa in patients with nasal hypersecretion with a reduction of rhinorrhea lasting for about 4 to 8 weeks. Since the nasal mucosa is well supplied with glands and vessels, the aim of this study was to find out if the distribution of BTA in the nasal mucosa and a reduction of nasal hypersecretion can also be reached by a minimally invasive application by sponges without an injection.

Methods

Patients were randomly divided into two groups. The effect of BTA (group A, C, D) or saline as placebo (group B) was investigated in 20 patients with idiopathic rhinitis by applying it with a sponge soaked with BTA (40 units each nostril) or saline. Subgroups C and D contained these patients of group A and B who did not improve in symptoms one week after the original treatment (either BTA or saline) who then received the alternative medication. Changes of symptoms (rhinorrhea, nasal obstruction) were scored by the patients in a four point scale and counted (consumption of tissues, sneezing) in a diary. The patients were followed up weeks 1, 2, 4, 8 and 12.

Results

There was a clear reduction of the amount of secretion in group A compared to group B, C and D. This did not correlate with the tissue consumption, which was comparably reduced in group A and B, but reduced less in group C and D. Sneezing was clearly reduced in group A but comparably unchanged in group B and C and increased in group D. Nasal congestion remained unchanged.

Conclusion

In some patients with therapy-resistant idiopathic rhinitis BTA applied with a sponge is a long-lasting and minimal invasive therapy to reduce nasal hypersecretion.
Development of monoclonal antibodies and quantitative ELISAs targeting insulin-degrading enzyme
Authors: DelleDonne Anthony , Kouri Naomi , Reinstatler Lael , Sahara Tomoko , Li Lilin , Zhao Ji , Dickson Dennis W , Ertekin-Taner Nilufer , Leissring Malcolm A
Published: October 2009

Background

Insulin-degrading enzyme (IDE) is a widely studied zinc-metalloprotease implicated in the pathogenesis of type 2 diabetes mellitus, Alzheimer disease (AD) and varicella zoster virus infection. Despite more than six decades of research on IDE, progress has been hampered by the lack of well-characterized reagents targeting this biomedically important protease. To address this important need, we generated and characterized new mouse monoclonal antibodies (mAbs) targeting natively folded human and rodent IDE.

Results

Eight monoclonal hybridoma cell lines were derived in house from mice immunized with full-length, natively folded, recombinant human IDE. The mAbs derived from these lines were shown to detect IDE selectively and sensitively by a wide range of methods. Two mAbs in particular—designated 6A1 and 6H9—proved especially selective for IDE in immunocytochemical and immunohistochemical applications. Using a variety of methods, we show that 6A1 selectively detects both human and rodent IDE, while 6H9 selectively detects human, but not rodent, IDE, with both mAbs showing essentially no cross reactivity with other proteins in these applications. Using these novel anti-IDE mAbs, we also developed sensitive and quantitative sandwich ELISAs capable of quantifying IDE levels present in human brain extracts.

Conclusion

We succeeded in developing novel mAbs that selectively detect rodent and/or human IDE, which we have shown to be suitable for a wide range of applications, including western blotting, immunoprecipitation, immunocytochemistry, immunohistochemistry, and quantitative sandwich ELISAs. These novel anti-IDE mAbs and the assays derived from them constitute important new tools for addressing many unresolved questions about the basic biology of IDE and its role in multiple highly prevalent human diseases.
Fluorometric determination of ethidium bromide efflux kinetics in Escherichia coli
Authors: Paixão Laura , Rodrigues Liliana , Couto Isabel , Martins Marta , Fernandes Pedro , de Carvalho Carla CCR , Monteiro Gabriel A , Sansonetty Filipe , Amaral Leonard , Viveiros Miguel
Published: October 2009

Background

Efflux pump activity has been associated with multidrug resistance phenotypes in bacteria, compromising the effectiveness of antimicrobial therapy. The development of methods for the early detection and quantification of drug transport across the bacterial cell wall is a tool essential to understand and overcome this type of drug resistance mechanism. This approach was developed to study the transport of the efflux pump substrate ethidium bromide (EtBr) across the cell envelope of Escherichia coli K-12 and derivatives, differing in the expression of their efflux systems.

Results

EtBr transport across the cell envelope of E. coli K-12 and derivatives was analysed by a semi-automated fluorometric method. Accumulation and efflux of EtBr was studied under limiting energy supply (absence of glucose and low temperature) and in the presence and absence of the efflux pump inhibitor, chlorpromazine. The bulk fluorescence variations were also observed by single-cell flow cytometry analysis, revealing that once inside the cells, leakage of EtBr does not occur and that efflux is mediated by active transport. The importance of AcrAB-TolC, the main efflux system of E. coli, in the extrusion of EtBr was evidenced by comparing strains with different levels of AcrAB expression. An experimental model was developed to describe the transport kinetics in the three strains. The model integrates passive entry (influx) and active efflux of EtBr, and discriminates different degrees of efflux between the studied strains that vary in the activity of their efflux systems, as evident from the calculated efflux rates: "Equation missing" = 0.0173 ± 0.0057 min-1; "Equation missing" = 0.0106 ± 0.0033 min-1; and "Equation missing" = 0.0230 ± 0.0075 min-1.

Conclusion

The combined use of a semi-automated fluorometric method and an experimental model allowed quantifying EtBr transport in E. coli strains that differ in their overall efflux activity. This methodology can be used for the early detection of differences in the drug efflux capacity in bacteria accounting for antibiotic resistance, as well as for expedite screening of new drug efflux inhibitors libraries and transport studies across the bacterial cell wall.
Enrichment of sequencing targets from the human genome by solution hybridization
Authors: Tewhey Ryan , Nakano Masakazu , Wang Xiaoyun , Pabón-Peña Carlos , Novak Barbara , Giuffre Angelica , Lin Eric , Happe Scott , Roberts Doug N , LeProust Emily M , Topol Eric J , Harismendy Olivier , Frazer Kelly A
Published: October 2009

To exploit fully the potential of current sequencing technologies for population-based studies, one must enrich for loci from the human genome. Here we evaluate the hybridization-based approach by using oligonucleotide capture probes in solution to enrich for approximately 3.9 Mb of sequence target. We demonstrate that the tiling probe frequency is important for generating sequence data with high uniform coverage of targets. We obtained 93% sensitivity to detect SNPs, with a calling accuracy greater than 99%.
The Cytokine Gene CXCL14 Restricts Human Trophoblast Cell Invasion by Suppressing Gelatinase Activity
Authors: Kuang HaiBin , Chen Qi , Zhang Ying , Zhang Li , Peng HongYing , Ning LiNa , Cao Yujing , Duan EnKui
Published: October 2009

Well-controlled trophoblast invasion into uterine decidua is a critical process for the normal development of placenta, which is tightly regulated by various factors produced within the trophoblast-endometrial microenvironment. CXCL14 is involved in tumor growth and metastasis, and its expression in placenta is temporally regulated during pregnancy. However, the role of CXCL14 in trophoblast function during human pregnancy is not clear. In this study, by using RT-PCR through human pregnancy, we found that CXCL14 was selectively expressed at early but not late pregnancy. Immunostaining revealed that CXCL14 proteins were strongly expressed in villous cytotrophoblasts and moderately in decidualized stromal cells but very weakly in syncytiotrophoblasts and extravillous trophoblasts. The effect of CXCL14 on trophoblast invasion were examined by using human villous explants cultured on Matrigel and further proved by invasion and migration assay of primary trophoblast cells and trophoblast cell line HTR-8/SVneo. Our data showed that CXCL14 significantly inhibited outgrowth of villous explant in vitro; this effect is due to suppression of trophoblast invasion and migration through regulating matrix metalloproteinases activities, whereas the trophoblast proliferation was not affected. Moreover, because a receptor for CXCL14 has not been identified, we performed further cell-specific CXCL14 binding activities with regard to different cell types within the maternal-fetal interface. Our data revealed that CXCL14 could specifically bind to trophoblast cells but not decidual cells from the maternal-fetal interface. These results suggest that CXCL14 plays an important role in regulating trophoblast invasion through an autocrine/paracrine manner during early pregnancy.
Radio frequency magnetic fields disrupt magnetoreception in American cockroach
Authors: Vácha Martin , Půžová Tereza , Kvíćalová Markéta
Published: October 2009

The sense that allows birds to orient themselves by the Earth's magnetic field can be disabled by an oscillating magnetic field whose intensity is just a fraction of the geomagnetic field intensity and whose oscillations fall into the medium or high frequency radio wave bands. This remarkable phenomenon points very clearly at one of two existing alternative magnetoreception mechanisms in terrestrial animals, i.e. the mechanism based on the radical pair reactions of specific photosensitive molecules. As the first such study in invertebrates, our work offers evidence that geomagnetic field reception in American cockroach is sensitive to a weak radio frequency field. Furthermore,we show that the `deafening' effect at Larmor frequency 1.2 MHz is stronger than at different frequencies. The parameter studied was the rise in locomotor activity of cockroaches induced by periodic changes in the geomagnetic North positions by 60 deg. The onset of the disruptive effect of a 1.2 MHz field was found between 12 nT and 18 nT whereas the threshold of a doubled frequency field 2.4 MHz fell between 18 nT and 44 nT. A 7 MHz field showed no impact even in maximal 44 nT magnetic flux density. The results indicate resonance effects rather than non-specific bias of procedure itself and suggest that insects may be equipped with the same magnetoreception system as the birds.
Allometry of skeletal muscle fine structure allows maintenance of aerobic capacity during ontogenetic growth
Authors: Young Steven , Egginton Stuart
Published: October 2009

Controversy exists over the scaling of oxygen consumption with body mass in vertebrates. A combination of biochemical and structural analyses were used to examine whether individual elements influencing oxygen delivery and demand within locomotory muscle respond similarly during ontogenetic growth of striped bass. Mass-specific metabolic enzyme activity confirmed that glycolytic capacity scaled positively in deep white muscle (regression slope, b=0.1 to 0.8) over a body mass range of ∼20–1500 g, but only creatine phosphokinase showed positive scaling in lateral red muscle(b=0.5). Although oxidative enzymes showed negative allometry in red muscle (b=–0.01 to –0.02), mass-specific myoglobin content scaled positively (b=0.7). Capillary to fibre ratio of red muscle was higher in larger (1.42±0.15) than smaller (1.20±0.15)fish, suggesting progressive angiogenesis. By contrast, capillary density decreased (1989±161 vs 2962±305 mm–2)as a result of larger fibre size (658±31 vs 307±24μm2 in 1595 g and 22.9 g fish, respectively). Thus, facilitated and convective delivery of O2 show opposite allometric trends. Relative mitochondrial content of red muscle (an index of O2demand) varied little with body mass overall, but declined from ∼40% fibre volume in the smallest to ∼30% in the largest fish. However, total content per fibre increased, suggesting that mitochondrial biogenesis supported aerobic capacity during fibre growth. Heterogeneous fibre size indicates both hypertrophic and hyperplastic growth, although positive scaling of fibre myofibrillar content (b=0.085) may enhance specific force generation in larger fish. Modelling intracellular PO2distribution suggests such integrated structural modifications are required to maintain adequate oxygen delivery (calculated PO2 5.15±0.02 kPa and 5.21±0.01 kPa in small and large fish, respectively).
Barnacle cement: a polymerization model based on evolutionary concepts
Authors: Dickinson Gary H. , Vega Irving E. , Wahl Kathryn J. , Orihuela Beatriz , Beyley Veronica , Rodriguez Eva N. , Everett Richard K. , Bonaventura Joseph , Rittschof Daniel
Published: October 2009

Enzymes and biochemical mechanisms essential to survival are under extreme selective pressure and are highly conserved through evolutionary time. We applied this evolutionary concept to barnacle cement polymerization, a process critical to barnacle fitness that involves aggregation and cross-linking of proteins. The biochemical mechanisms of cement polymerization remain largely unknown. We hypothesized that this process is biochemically similar to blood clotting, a critical physiological response that is also based on aggregation and cross-linking of proteins. Like key elements of vertebrate and invertebrate blood clotting, barnacle cement polymerization was shown to involve proteolytic activation of enzymes and structural precursors,transglutaminase cross-linking and assembly of fibrous proteins. Proteolytic activation of structural proteins maximizes the potential for bonding interactions with other proteins and with the surface. Transglutaminase cross-linking reinforces cement integrity. Remarkably, epitopes and sequences homologous to bovine trypsin and human transglutaminase were identified in barnacle cement with tandem mass spectrometry and/or western blotting. Akin to blood clotting, the peptides generated during proteolytic activation functioned as signal molecules, linking a molecular level event (protein aggregation) to a behavioral response (barnacle larval settlement). Our results draw attention to a highly conserved protein polymerization mechanism and shed light on a long-standing biochemical puzzle. We suggest that barnacle cement polymerization is a specialized form of wound healing. The polymerization mechanism common between barnacle cement and blood may be a theme for many marine animal glues.
Limits to sustained energy intake. XI. A test of the heat dissipation limitation hypothesis in lactating Brandt's voles (Lasiopodomys brandtii)
Authors: Wu Su-Hui , Zhang Li-Na , Speakman John R. , Wang De-Hua
Published: October 2009

The maximum rate of sustained energy intake (SusEI) may limit reproductive effort, thermoregulatory capability and other aspects of an animal's energy expenditure. Consequently, factors that limit SusEI are of interest. The `heat dissipation limitation hypothesis' suggests that maximum SusEI during lactation is limited by the capacity to dissipate body heat generated as a by-product of processing food and producing milk. In the present study, we tested the heat dissipation limitation hypothesis in lactating Brandt's voles(Lasiopodomys brandtii). Female voles were mated and pregnant at 21(±1)°C. A random sample of animals was transferred into a hot room 30(±1)°C on the day of parturition. The energy intake of lactating voles at 30°C was always lower than that at 21°C. At peak lactation food intake was 3.3 g day–1 lower at 30°C than at 21°C. There was no significant difference in digestibility. With similar mean litter sizes (7.26±0.46 pups at 21°C and 7.78±0.39 pups at 30°C at the beginning of parturition,6.83±0.51 pups at 21°C and 7.73±0.50 pups at 30°C at weaning), the milk energy output of mothers, evaluated from the difference between metabolizable energy intake and daily energy expenditure measured by doubly labelled water, at 30°C was 23.3 kJ day–1 lower than that at 21°C on days 14–16 of lactation. As for reproductive performance, there was a difference in the response to the higher temperature between mothers raising large and those raising small litters. For small litters (<7) there was no significant change in litter mass, but for large litters (<7) there was a significant decrease at the higher temperature. On average, in larger litters the pups were 15.5 g heavier on day 12 of lactation when raised at 21°C. Our data from Brandt's voles support the suggestion that SusEI at peak lactation is limited by heat dissipation capacity,particularly for those voles raising large litters. In smaller litters the peripheral limitation hypothesis may be more relevant. The importance of heat dissipation limits in species raising exclusively small litters needs to be investigated.
Expression of calsequestrin in atrial and ventricular muscle of thermally acclimated rainbow trout
Authors: Korajoki Hanna , Vornanen Matti
Published: October 2009

Calsequestrin (CASQ) is the main Ca2+ binding protein within the sarcoplasmic reticulum (SR) of the vertebrate heart. The contribution of SR Ca2+ stores to contractile activation is larger in atrial than ventricular muscle, and in ectothermic fish hearts acclimation to low temperatures increases the use of SR Ca2+ in excitation–contraction coupling. The hypotheses that chamber-specific and temperature-induced differences in SR function are due to the increased SR CASQ content were tested in rainbow trout (Oncorhynchus mykiss)acclimated at either 4°C (cold acclimation, CA) or 18°C (warm acclimation, WA). To this end, the trout cardiac CASQ (omCASQ2) was cloned and sequenced. The omCASQ2 consists of 1275 nucleotides encoding a predicted protein of 425 amino acids (54 kDa in molecular mass, MM)with a high (75–87%) sequence similarity to other vertebrate cardiac CASQs. The transcript levels of the omCASQ2 were 1.5–2 times higher in CA than WA fish and about 2.5 times higher in the atrium than ventricle (P<0.001). The omCASQ2 protein was measured from western blots using a polyclonal antibody against the amino acid sequence 174–315 of the omCASQ2. Unlike the omCASQ2 transcripts, no differences were found in the abundance of the omCASQ2 protein between CA and WA fish, nor between the atrium and ventricle (P>0.05). However, a prominent qualitative difference appeared between the acclimation groups: two CASQ isoforms with apparent MMs of 54 and 59 kDa, respectively, were present in atrial and ventricular muscle of the WA trout whereas only the 54 kDa protein was clearly expressed in the CA heart. The 59 kDA isoform was a minor CASQ component representing 22% and 13% of the total CASQ proteins in the atrium and ventricle of the WA fish, respectively. In CA hearts, the 59 kDa protein was present in trace amounts (1.5–2.4%). Collectively, these findings indicate that temperature-related and chamber-specific differences in trout cardiac SR function are not related to the abundance of luminal Ca2+ buffering by cardiac CASQ.
Auditory mechanics and sensitivity in the tropical butterfly Morpho peleides (Papilionoidea, Nymphalidae)
Authors: Lucas Kathleen M. , Windmill James F. C. , Robert Daniel , Yack Jayne E.
Published: October 2009

The ears of insects exhibit a broad functional diversity with the ability to detect sounds across a wide range of frequencies and intensities. In tympanal ears, the membrane is a crucial step in the transduction of the acoustic stimulus into a neural signal. The tropical butterfly Morpho peleides has an oval-shaped membrane at the base of the forewing with an unusual dome in the middle of the structure. We are testing the hypothesis that this unconventional anatomical arrangement determines the mechanical tuning properties of this butterfly ear. Using microscanning laser Doppler vibrometry to measure the vibrational characteristics of this novel tympanum,the membrane was found to vibrate in two distinct modes, depending on the frequency range: at lower frequencies (1–5 kHz) the vibration was focused at the proximal half of the posterior side of the outer membrane,while at higher frequencies (5–20 kHz) the entire membrane contributed to the vibration. The maximum deflection points of the two vibrational modes correspond to the locations of the associated chordotonal organs, suggesting that M. peleides has the capacity for frequency partitioning because of the different vibrational properties of the two membrane components. Extracellular nerve recordings confirm that the innervating chordotonal organs respond to the same frequency range of 1–20 kHz, and are most sensitive between 2 and 4 kHz, although distinct frequency discrimination was not observed. We suggest that this remarkable variation in structure is associated with function that provides a selective advantage, particularly in predator detection.
White-throated sparrows calibrate their magnetic compass by polarized light cues during both autumn and spring migration
Authors: Muheim Rachel , Phillips John B. , Deutschlander Mark E.
Published: October 2009

The interaction and hierarchy of celestial and magnetic compass cues used by migratory songbirds for orientation has long been the topic of an intense debate. We have previously shown that migratory Savannah sparrows, Passerculus sandwichensis, use polarized light cues near the horizon at sunrise and sunset to recalibrate their magnetic compass. Birds exposed to a ±90 deg. shifted artificial polarization pattern at sunrise or sunset recalibrated their magnetic compass, but only when given full access to celestial cues, including polarized light cues near the horizon. In the current study, we carried out cue conflict experiments with white-throated sparrows, Zonotrichia albicollis, during both spring and autumn migration in a transition zone between the species' breeding and wintering areas on the south shore of Lake Ontario. We show that white-throated sparrows also recalibrate their magnetic compass by polarized light cues at sunrise and sunset. Sunrise exposure to an artificial polarization pattern shifted relative to the natural magnetic field or exposure to a shift of the magnetic field relative to the natural sky both led to recalibration of the magnetic compass, demonstrating that artificial polarizing filters do not create an anomalous, unnatural orientation response. Our results further indicate that there is no evidence for a difference in compass hierarchy between different phases of migration, confirming previous work showing that polarized light cues near the horizon at sunrise and sunset provide the primary calibration reference both in the beginning and at the end of migration.
Potential mechanism of sound production in Oreochromis niloticus(Cichlidae)
Authors: Longrie Nicolas , Van Wassenbergh Sam , Vandewalle Pierre , Mauguit Quentin , Parmentier Eric
Published: October 2009

Although acoustic communication is an integral part of cichlid behaviour,its mechanism has never been identified before. In the present study, a combination of approaches was used to investigate the sound-producing mechanism of Oreochromis niloticus. Synchronisation of high-speed video data (500 frames s–1) and cineradiographies (250 frames s–1) with the sound recordings made it possible to locate the different body parts involved in sound production in territorial males. Sounds are made during a backward movement of the pelvic and pectoral girdles and a forward movement of the second pterygiophore of the anal fin. Various electrostimulation experiments, dissections and observation of histological cross-sections revealed a set of bundles (that we call the vesica longitudinalis) situated in the hypaxial musculature, ventro-laterally to the swimbladder. Contraction of these bundles should result in compression of the rib cage and also of the swimbladder, because of its close association with the serosa and ribs. Deflation of the swimbladder resulted in a reduced sound intensity.
Waveform diversity of electric organ discharges: the role of electric organ auto-excitability inGymnotusspp.
Authors: Rodríguez-Cattáneo Alejo , Caputi Angel Ariel
Published: October 2009

This article shows that differences in the waveforms of the electric organ discharges (EODs) from two taxa are due to the different responsiveness of their electric organs (EOs) to their previous activity (auto-excitability). We compared Gymnotus omarorum endemic to Uruguay (35° South, near a big estuary), which has four components in the head to tail electric field(V1 to V4), with Gymnotus sp. endemic to the south of Brazil, Paraguay and Argentinean Mesopotamia (25° South, inland),which shows a fifth component in addition to the others (V5). We found that: (a) the innervation pattern of the electrocytes, (b) the three earlier, neurally driven, EOD components (V1 to V3), and(c) their remnants after curarisation were almost identical in the two taxa. The equivalent electromotive forces of late components (V4 and V5) increased consistently as a function of the external current associated with the preceding component and were abolished by partial curarisation in both taxa. Taken together these data suggest that these components are originated in the responses of the electrocytes to longitudinal currents through the EO. By using a differential load procedure we showed that V4 in G. omarorum responded to experimental changes in its excitation current with larger amplitude variations than V4 in Gymnotus sp. We conclude that the differences in the EOD phenotype of the two studied taxa are due to the different EO auto-excitability. This, in turn, is caused either by the different expression of a genetic repertoire of conductance in the electrocyte membrane or in the wall of the tubes forming the EO.
Insect eggs protected from high temperatures by limited homeothermy of plant leaves
Authors: Potter Kristen , Davidowitz Goggy , Woods H. Arthur
Published: October 2009

Virtually all aspects of insect biology are affected by body temperature,and many taxa have evolved sophisticated temperature-control mechanisms. All insects, however, begin life as eggs and lack the ability to thermoregulate. Eggs laid on leaves experience a thermal environment, and thus a body temperature, that is strongly influenced by the leaves themselves. Because plants can maintain leaf temperatures that differ from ambient, e.g. by evapotranspiration, plant hosts may protect eggs from extreme ambient temperatures. We examined the degree to which leaves buffer ambient thermal variation and whether that buffering benefits leaf-associated insect eggs. In particular, we: (1) measured temperature variation at oviposition sites in the field, (2) manipulated temperatures in the laboratory to determine the effect of different thermal conditions on embryo development time and survival, and(3) tested embryonic metabolic rates over increasing temperatures. Our results show that Datura wrightii leaves buffer Manduca sexta eggs from fatally high ambient temperatures in the southwestern USA. Moreover, small differences in temperature profiles among leaves can cause large variation in egg metabolic rate and development time. Specifically, large leaves were hotter than small leaves during the day, reaching temperatures that are stressfully high for eggs. This study provides the first mechanistic demonstration of how this type of leaf-constructed thermal refuge interacts with egg physiology.
Acoustical properties of the swimbladder in the oyster toadfish Opsanus tau
Authors: Fine Michael L. , King Charles B. , Cameron Timothy M.
Published: October 2009

Both the swimbladder and sonic muscles of the oyster toadfish Opsanus tau (Linnaeus) increase in size with fish growth making it difficult to distinguish their relative contributions to sound production. We examined acoustics of the swimbladder independent of the sonic muscles by striking it with a piezoelectric impact hammer. Amplitude and timing characteristics of bladder sound and displacement were compared for strikes of different amplitudes. Most of the first cycle of sound occurred during swimbladder compression, indicating that the bladder rapidly contracted and expanded as force increased during the strike. Harder hits were shorter in duration and generated a 30 dB increase in amplitude for a 5-fold or 14 dB range in displacement. For an equivalent strike dominant frequency, damping, bladder displacement and sound amplitude did not change with fish size, i.e. equal input generated equal output. The frequency spectrum was broad, and dominant frequency was driven by the strike and not the natural frequency of the bladder. Bladder displacement decayed rapidly (ζ averaged 0.33,equivalent to an automobile shock absorber), and the bladder had a low Q (sharpness of tuning), averaging 1.8. Sound output of an acoustic source is determined by volume velocity (surface area × velocity), and bladder surface area, muscle dimensions and contraction amplitude increase with fish size. Therefore, larger fish will be capable of producing more intense sound. Because the bladder is a low Q resonator, its output will follow muscle contraction rates independent of its size and natural frequency.
Methionine supplementation influences melanin-based plumage colouration in Eurasian kestrel,Falco tinnunculus, nestlings
Authors: Parejo Deseada , Silva Nadia
Published: October 2009

The extent to which the expression of melanin-based plumage colouration in birds is genetically or environmentally determined is controversial. Here, we performed a between-nest design supplementation with either the sulphur amino acid dl-methionine or with water to investigate the importance of the non-genetic component of melanin-based plumage colouration in the Eurasian kestrel, Falco tinnunculus. Methionine affects growth and immunity,thus we aimed to modify nestling growth and immunity before feather development. Then, we measured the effect of the experiment on colouration of two melanin-based plumage patches of nestling kestrels. We found that methionine slowed down nestling growth through treatment administration and that nestlings compensated by speeding up their growth later. We did not find any effects of methionine on nestling immunity (i.e. lymphocyte counts,natural antibody levels or complement-mediated immunity). Effects on growth seemed to be mirrored by changes in nestling colouration in the two sexes:methionine-nestlings showed less intense brown plumage on their backs compared with control nestlings. These results provide support for a non-genetic determination of a melanin-based plumage patch in the two sexes of nestling kestrels.
Whole limb kinematics are preferentially conserved over individual joint kinematics after peripheral nerve injury
Authors: Chang Young-Hui , Auyang Arick G. , Scholz John P. , Nichols T. Richard
Published: October 2009

Biomechanics and neurophysiology studies suggest whole limb function to be an important locomotor control parameter. Inverted pendulum and mass-spring models greatly reduce the complexity of the legs and predict the dynamics of locomotion, but do not address how numerous limb elements are coordinated to achieve such simple behavior. As a first step, we hypothesized whole limb kinematics were of primary importance and would be preferentially conserved over individual joint kinematics after neuromuscular injury. We used a well-established peripheral nerve injury model of cat ankle extensor muscles to generate two experimental injury groups with a predictable time course of temporary paralysis followed by complete muscle self-reinnervation. Mean trajectories of individual joint kinematics were altered as a result of deficits after injury. By contrast, mean trajectories of limb orientation and limb length remained largely invariant across all animals, even with paralyzed ankle extensor muscles, suggesting changes in mean joint angles were coordinated as part of a long-term compensation strategy to minimize change in whole limb kinematics. Furthermore, at each measurement stage (pre-injury,paralytic and self-reinnervated) step-by-step variance of individual joint kinematics was always significantly greater than that of limb orientation. Our results suggest joint angle combinations are coordinated and selected to stabilize whole limb kinematics against short-term natural step-by-step deviations as well as long-term, pathological deviations created by injury. This may represent a fundamental compensation principle allowing animals to adapt to changing conditions with minimal effect on overall locomotor function.
Surgical removal of right-to-left cardiac shunt in the American alligator(Alligator mississippiensis) causes ventricular enlargement but does not alter apnoea or metabolism during diving
Authors: Eme John , Gwalthney June , Blank Jason M. , Owerkowicz Tomasz , Barron Gildardo , Hicks James W.
Published: October 2009

Crocodilians have complete anatomical separation between the ventricles,similar to birds and mammals, but retain the dual aortic arch system found in all non-avian reptiles. This cardiac anatomy allows surgical modification that prevents right-to-left (R–L) cardiac shunt. A R–L shunt is a bypass of the pulmonary circulation and recirculation of oxygen-poor blood back to the systemic circulation and has often been observed during the frequent apnoeic periods of non-avian reptiles, particularly during diving in aquatic species. We eliminated R–L shunt in American alligators(Alligator mississippiensis) by surgically occluding the left aorta(LAo; arising from right ventricle) upstream and downstream of the foramen of Panizza (FoP), and we tested the hypotheses that this removal of R–L shunt would cause afterload-induced cardiac remodelling and adversely affect diving performance. Occlusion of the LAo both upstream and downstream of the FoP for ∼21 months caused a doubling of RV pressure and significant ventricular enlargement (average ∼65%) compared with age-matched,sham-operated animals. In a separate group of recovered, surgically altered alligators allowed to dive freely in a dive chamber at 23°C, occlusion of the LAo did not alter oxygen consumption or voluntary apnoeic periods relative to sham animals. While surgical removal of R–L shunt causes considerable changes in cardiac morphology similar to aortic banding in mammals, its removal does not affect the respiratory pattern or metabolism of alligators. It appears probable that the low metabolic rate of reptiles, rather than pulmonary circulatory bypass, allows for normal aerobic dives.