bluuebunny/crossref_metadata_2025 huggingface dataset:
Co-feeding glucose with either gluconate or galacturonate during clostridial fermentations provides metabolic fine-tuning capabilities
Authors: Zu Theresah N. K. , Liu Sanchao , Gerlach Elliot S. , Mojadedi Wais , Sund Christian J.
Published: January 2021

Clostridiumacetobutylicum ATCC 824 effectively utilizes a wide range of substrates to produce commodity chemicals. When grown on substrates of different oxidation states, the organism exhibits different recycling needs of reduced intracellular electron carrying co-factors. Ratios of substrates with different oxidation states were used to modulate the need to balance electron carriers and demonstrate fine-tuned control of metabolic output. Three different oxidized substrates were first fed singularly, then in different ratios to three different strains of Clostridium sp. Growth was most robust when fed glucose in exclusive fermentations. However, the use of the other two more oxidized substrates was strain-dependent in exclusive feeds. In glucose-galacturonate mixed fermentation, the main products (acetate and butyrate) were dependant on the ratios of the substrates. Exclusive fermentation on galacturonate was nearly homoacetic. Co-utilization of galacturonate and glucose was observed from the onset of fermentation in growth conditions using both substrates combined, with the proportion of galacturonate present dictating the amount of acetate produced. For all three strains, increasing galacturonate content (%) in a mixture of galacturonate and glucose from 0 to 50, and 100, resulted in a corresponding increase in the amount of acetate produced. For example, C.acetobutylicum increased from ~ 10 mM to ~ 17 mM, and then ~ 23 mM. No co-utilization was observed when galacturonate was replaced with gluconate in the two substrate co-feed.
Surface ocean microbiota determine cloud precursors
Authors: Sellegri Karine , Nicosia Alessia , Freney Evelyn , Uitz Julia , Thyssen Melilotus , Grégori Gérald , Engel Anja , Zäncker Birthe , Haëntjens Nils , Mas Sébastien , Picard David , Saint-Macary Alexia , Peltola Maija , Rose Clémence , Trueblood Jonathan , Lefevre Dominique , D’Anna Barbara , Desboeufs Karine , Meskhidze Nicholas , Guieu Cécile , Law Cliff S.
Published: January 2021

One pathway by which the oceans influence climate is via the emission of sea spray that may subsequently influence cloud properties. Sea spray emissions are known to be dependent on atmospheric and oceanic physicochemical parameters, but the potential role of ocean biology on sea spray fluxes remains poorly characterized. Here we show a consistent significant relationship between seawater nanophytoplankton cell abundances and sea-spray derived Cloud Condensation Nuclei (CCN) number fluxes, generated using water from three different oceanic regions. This sensitivity of CCN number fluxes to ocean biology is currently unaccounted for in climate models yet our measurements indicate that it influences fluxes by more than one order of magnitude over the range of phytoplankton investigated.
Cutaneous T-cell lymphoma in erythrodermic cases may be suspected on the basis of scalp examination with dermoscopy
Authors: Rakowska Adriana , Jasińska Magdalena , Sikora Mariusz , Czuwara Joanna , Gajda-Mróz Patrycja , Warszawik-Hendzel Olga , Kwiatkowska Małgorzata , Waśkiel-Burnat Anna , Olszewska Małgorzata , Rudnicka Lidia
Published: January 2021

Erythrodermic variants of cutaneous T-cell lymphoma (CTLC) are one of the case of erythroderma. The aim of the study was to assess the value of scalp dermoscopy in differentiation between erythrodermic CTCL, psoriasis, and atopic dermatitis. A total of 76 patients were included into the study (16 patients with erythrodermic CTCL, 20 patients with psoriatic erythroderma, 20 with erythrodermic atopic dermatitis, and 20 healthy volunteers). The most common trichoscopic features of erythrodermic CTCL were: numerous pili torti, numerous broken hairs, white thick interfollicular bands, and patchy hyperpigmentation of the background. They were observed in 81% (13/16), 75% (12/16), 56% (9/16), and 37.5% (6/16) of patients with CTCL, respectively (p < 0.001). Other specific features of erythrodermic CTCL were 8-shaped hairs (19%; 3/16) and visible anagen bulbs (12.5%; 2/16) (p < 0.05 and p = 0.052, respectively). The most common vascular pattern of erythrodermic CTCL was perifollicular arrangement of glomerular (50%; 8/16; p < 0.001) or linear vessels (31%; 5/16; p < 0.05). Follicular spicules-like scaling was pathognomonic for erythrodermic CTCL (12%, 2/16) although its presence did not reach statistical significance (p = 0.052). In conclusion, the characteristic trichoscopic findings of erythrodermic CTCL are numerous pili torti, eight-shaped hairs, thick white interfollicular bands, color heterogeneity of the background and perifollicular arrangement of vessels.
CdO/CdCO3 nanocomposite physical properties and cytotoxicity against selected breast cancer cell lines
Authors: Lefojane R. P. , Sone B. T. , Matinise N. , Saleh K. , Direko P. , Mfengwana P. , Mashele S. , Maaza M. , Sekhoacha M. P.
Published: January 2021

Cadmium Oxide nanoparticles have the lowest toxicity when compared to nanoparticles of other semiconductors and they are not detrimental to human and mammalian cells, thereby making them candidates for targeting cancer cells. Synadenium cupulare plant extracts were used to synthesize CdO/CdCO3 nanocomposite using cadmium nitrate tetrahydrate 98% as a precursor salt. The resultant nanoparticles were characterized using scanning electron microscopy (SEM), transmission electron microscopy (TEM), X-ray diffraction (XRD), X-ray photoelectron spectroscopy, ultraviolet visible spectroscopy, and Fourier transform infrared spectroscopy (FTIR). The nanoparticles were then screened for effect on breast cancer cell lines (MCF-7 and MDA MB-231) and Vero cell line to determine their growth inhibition effect. Cytotoxicity effect was evaluated using 3-(4,5-Dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide assay. XRD showed the peaks of monteponite CdO and otavite CdCO3 nanoparticles. TEM results showed irregular and spherical particles of varying sizes, whilst SEM revealed a non-uniform morphology. FTIR results showed peaks of functional groups which are present in some of the phytochemical compounds found in S. cupulare, and point to the presence of CdO. Annealed CdO/CdCO3 NPs showed selectivity for MCF7 and MDA MB231 in comparison to Vero cell line, thereby supporting the hypothesis that cadmium oxide nanoparticles inhibit growth of cancerous cells more than non-cancerous cells.
Sensitivity to haptic sound-localisation cues
Authors: Fletcher Mark D. , Zgheib Jana , Perry Samuel W.
Published: January 2021

Hearing aid and cochlear implant (CI) users often struggle to locate and segregate sounds. The dominant sound-localisation cues are time and intensity differences across the ears. A recent study showed that CI users locate sounds substantially better when these cues are provided through haptic stimulation on each wrist. However, the sensitivity of the wrists to these cues and the robustness of this sensitivity to aging is unknown. The current study showed that time difference sensitivity is much poorer across the wrists than across the ears and declines with age. In contrast, high sensitivity to across-wrist intensity differences was found that was robust to aging. This high sensitivity was observed across a range of stimulation intensities for both amplitude modulated and unmodulated sinusoids and matched across-ear intensity difference sensitivity for normal-hearing individuals. Furthermore, the usable dynamic range for haptic stimulation on the wrists was found to be around four times larger than for CIs. These findings suggest that high-precision haptic sound-localisation can be achieved, which could aid many hearing-impaired listeners. Furthermore, the finding that high-fidelity across-wrist intensity information can be transferred could be exploited in human–machine interfaces to enhance virtual reality and improve remote control of military, medical, or research robots.
Spatial modeling of biological patterns shows multiscale organization of Arabidopsis thaliana heterochromatin
Authors: Arpòn Javier , Sakai Kaori , Gaudin Valérie , Andrey Philippe
Published: January 2021

The spatial organization in the cell nucleus is tightly linked to genome functions such as gene regulation. Similarly, specific spatial arrangements of biological components such as macromolecular complexes, organelles and cells are involved in many biological functions. Spatial interactions among elementary components of biological systems define their relative positioning and are key determinants of spatial patterns. However, biological variability and the lack of appropriate spatial statistical methods and models limit our current ability to analyze these interactions. Here, we developed a framework to dissect spatial interactions and organization principles by combining unbiased statistical tests, multiple spatial descriptors and new spatial models. We used plant constitutive heterochromatin as a model system to demonstrate the potential of our framework. Our results challenge the common view of a peripheral organization of chromocenters, showing that chromocenters are arranged along both radial and lateral directions in the nuclear space and obey a multiscale organization with scale-dependent antagonistic effects. The proposed generic framework will be useful to identify determinants of spatial organizations and to question their interplay with biological functions.
Antagomir-mediated suppression of microRNA-134 reduces kainic acid-induced seizures in immature mice
Authors: Campbell Aoife , Morris Gareth , Heller Janosch P. , Langa Elena , Brindley Elizabeth , Worm Jesper , Jensen Mads Aaboe , Miller Meghan T. , Henshall David C. , Reschke Cristina R.
Published: January 2021

MicroRNAs are short non-coding RNAs that negatively regulate protein levels and perform important roles in establishing and maintaining neuronal network function. Previous studies in adult rodents have detected upregulation of microRNA-134 after prolonged seizures (status epilepticus) and demonstrated that silencing microRNA-134 using antisense oligonucleotides, termed antagomirs, has potent and long-lasting seizure-suppressive effects. Here we investigated whether targeting microRNA-134 can reduce or delay acute seizures in the immature brain. Status epilepticus was induced in 21 day-old (P21) male mice by systemic injection of 5 mg/kg kainic acid. This triggered prolonged electrographic seizures and select bilateral neuronal death within the CA3 subfield of the hippocampus. Expression of microRNA-134 and functional loading to Argonaute-2 was not significantly changed in the hippocampus after seizures in the model. Nevertheless, when levels of microRNA-134 were reduced by prior intracerebroventricular injection of an antagomir, kainic acid-induced seizures were delayed and less severe and mice displayed reduced neuronal death in the hippocampus. These studies demonstrate targeting microRNA-134 may have therapeutic applications for the treatment of seizures in children.
A novel quantitative and reference-free ultrasound analysis to discriminate different concentrations of bone mineral content
Authors: Sorriento A. , Poliziani A. , Cafarelli A. , Valenza G. , Ricotti L.
Published: January 2021

Bone fracture is a continuous process, during which bone mineral matrix evolves leading to an increase in hydroxyapatite and calcium carbonate content. Currently, no gold standard methods are available for a quantitative assessment of bone fracture healing. Moreover, the available tools do not provide information on bone composition. Whereby, there is a need for objective and non-invasive methods to monitor the evolution of bone mineral content. In general, ultrasound can guarantee a quantitative characterization of tissues. However, previous studies required measurements on reference samples. In this paper we propose a novel and reference-free parameter, based on the entropy of the phase signal calculated from the backscattered data in combination with amplitude information, to also consider absorption and scattering phenomena. The proposed metric was effective in discriminating different hydroxyapatite (from 10 to 50% w/v) and calcium carbonate (from 2 to 6% w/v) concentrations in bone-mimicking phantoms without the need for reference measurements, paving the way to their translational use for the diagnosis of tissue healing. To the best of our knowledge this is the first time that the phase entropy of the backscattered ultrasound signals is exploited for monitoring changes in the mineral content of bone-like materials.
Effect of domperidone, ondansetron, olanzapine-containing antiemetic regimen on QTC interval in patients with malignancy: a prospective, observational, single-group, assessor-blinded study
Authors: Kamath Ashwin , Rai K. Maneesh , Shreyas R. , Saxena PU Prakash , Banerjee Sourjya
Published: January 2021

Domperidone, ondansetron and olanzapine can prolong the QT interval. The clinical use of combinations of these drugs is not uncommon. Our study aimed to determine the presence of any QTc prolonging effect of the combination when used as antiemetic in patients receiving cancer chemotherapy. We carried out a prospective, observational study of patients with malignancy who were to receive domperidone, ondansetron and olanzapine-containing antiemetic regimen. Electrocardiograms were recorded before and during the administration of antiemetics, for three consecutive days. A blinded assessor determined the QTc interval using Bazett and Fridericia formulae. Thirty-six patients completed the study; 23 (63.9%) were females. There was a statistically significant change in QTc with time (Fridericia, χ2(4) = 15.629, p = 0.004; Bazett, χ2(4) = 15.910, p = 0.003); QTc on Day 1 was more than that during baseline (p < 0.001); these differences were significant in females (Fridericia, χ2(4) = 13.753, p = 0.008; Bazett, χ2 (4) = 13.278, p = 0.010) but not in males (Fridericia, χ2 (4) = 4.419, p = 0.352; Bazett, χ2(4) = 4.280, p = 0.369). Two female patients had an absolute QTc prolongation (Bazett correction) of > 500 ms. However, no clinically significant adverse events occurred. The findings show that QTc prolongation is a concern with olanzapine alone and in combination with domperidone and ondansetron, and needs to be investigated further.
Oxylipins are implicated as communication signals in tomato–root-knot nematode (Meloidogyne javanica) interaction
Authors: Fitoussi Nathalia , Borrego Eli , Kolomiets Michael V. , Qing Xue , Bucki Patricia , Sela Noa , Belausov Eduard , Braun Miyara Sigal
Published: January 2021

Throughout infection, plant-parasitic nematodes activate a complex host defense response that will regulate their development and aggressiveness. Oxylipins—lipophilic signaling molecules—are part of this complex, performing a fundamental role in regulating plant development and immunity. At the same time, the sedentary root-knot nematodeMeloidogynespp. secretes numerous effectors that play key roles during invasion and migration, supporting construction and maintenance of nematodes' feeding sites. Herein, comprehensive oxylipin profiling of tomato roots, performed using LC–MS/MS, indicated strong and early responses of many oxylipins following root-knot nematode infection. To identify genes that might respond to the lipidomic defense pathway mediated through oxylipins, RNA-Seq was performed by exposingMeloidogyne javanicasecond-stage juveniles to tomato protoplasts and the oxylipin 9-HOT, one of the early-induced oxylipins in tomato roots upon nematode infection. A total of 7512 differentially expressed genes were identified. To target putative effectors, we sought differentially expressed genes carrying a predicted secretion signal peptide. Among these, several were homologous with known effectors in other nematode species; other unknown, potentially secreted proteins may have a role as root-knot nematode effectors that are induced by plant lipid signals. These include effectors associated with distortion of the plant immune response or manipulating signal transduction mediated by lipid signals. Other effectors are implicated in cell wall degradation or ROS detoxification at the plant–nematode interface. Being an integral part of the plant's defense response, oxylipins might be placed as important signaling molecules underlying nematode parasitism.
Quantification of dissolved O2 in bulk aqueous solutions and porous media using NMR relaxometry
Authors: Livo Kurt , Prasad Manika , Graham Trent R.
Published: January 2021

Effects of dissolved paramagnetic oxygen (O2) in water on 1H nuclear magnetic resonance (NMR) Carr-Purcell-Meiboom-Gill (CPMG) experiments is evaluated at a 1H Larmor frequency of 2 MHz. Dissolution of O2 into water significantly reduces the 1H transverse relaxation coefficient (T2). For deoxygenated water, T2 is 3388 ms, water at ambient atmospheric conditions (7.4 mg/L O2) exhibits a T2 of 2465 ms, and dissolution of 2710 mg/L O2 further reduces T2 to 36 ms. The results were fit with an empirical model to facilitate prediction of T2 times for bulk water as a function of paramagnetic oxygen concentrations in solution. Dissolved O2 also greatly influences 1H NMR CPMG experiments of confined water in a model system composed of Berea sandstone. For this system, 90 mg/L O2 in H2O enhances T2 relaxation of bulk water such that the relaxation time is comparable to physically confined water in the sandstone pores. Given the sensitivity of NMR T2 coefficients to paramagnetic oxygen, low-field NMR-based characterization of fluid and porous media structure requires control of dissolved oxygen, as geospatial variation in the partial pressure of O2 alone is expected to perturb fluid and pore relaxation times by up to 60 and 36%, respectively.
Interplay between success and patterns of human collaboration: case study of a Thai Research Institute
Authors: Fiscarelli Antonio Maria , Brust Matthias R. , Bouffanais Roland , Piyatumrong Apivadee , Danoy Grégoire , Bouvry Pascal
Published: January 2021

Networks of collaboration are notoriously complex and the mechanisms underlying their evolution, although of high interest, are still not fully understood. In particular, collaboration networks can be used to model the interactions between scientists and analyze the circumstances that lead to successful research. This task is not trivial and conventional metrics, based on number of publications and number of citations of individual authors, may not be sufficient to provide a deep insight into the factors driving scientific success. However, network analysis techniques based on centrality measures and measures of the structural properties of the network are promising to that effect. In recent years, it has become evident that most successful research works are achieved by teams rather than individual researchers. Therefore, researchers have developed a keen interest in the dynamics of social groups. In this study, we use real world data from a Thai computer technology research center, where researchers collaborate on different projects and team up to produce a range of artifacts. For each artifact, a score that measures quality of research is available and shared between the researchers that contributed to its creation, according to their percentage of contribution. We identify several measures to quantify productivity and quality of work, as well as centrality measures and structural measures. We find that, at individual level, centrality metrics are linked to high productivity and quality of work, suggesting that researchers who cover strategic positions in the network of collaboration are more successful. At the team level, we show that the evolution in time of structural measures are also linked to high productivity and quality of work. This result suggests that variables such as team size, turnover rate, team compactness and team openness are critical factors that must be taken into account for the success of a team. The key findings of this study indicate that the success of a research institute needs to be assessed in the context of not just researcher or team level, but also on how the researchers engage in collaboration as well as on how teams evolve.
Cardioprotective effect of combination therapy by mild hypothermia and local or remote ischemic preconditioning in isolated rat hearts
Authors: Hjortbak Marie V. , Jespersen Nichlas R. , Jensen Rebekka V. , Lassen Thomas R. , Hjort Johanne , Povlsen Jonas A. , Støttrup Nicolaj B. , Hansen Jakob , Hausenloy Derek J. , Bøtker Hans Erik
Published: January 2021

A multitargeted strategy to treat the consequences of ischemia and reperfusion (IR) injury in acute myocardial infarction may add cardioprotection beyond reperfusion therapy alone. We investigated the cardioprotective effect of mild hypothermia combined with local ischemic preconditioning (IPC) or remote ischemic conditioning (RIC) on IR injury in isolated rat hearts. Moreover, we aimed to define the optimum timing of initiating hypothermia and evaluate underlying cardioprotective mechanisms. Compared to infarct size in normothermic controls (56 ± 4%), mild hypothermia during the entire or final 20 min of the ischemic period reduced infarct size (34 ± 2%, p < 0.01; 35 ± 5%, p < 0.01, respectively), while no reduction was seen when hypothermia was initiated at reperfusion (51 ± 4%, p = 0.90). In all groups with effect of mild hypothermia, IPC further reduced infarct size. In contrast, we found no additive effect on infarct size between hypothermic controls (20 ± 3%) and the combination of mild hypothermia and RIC (33 ± 4%, p = 0.09). Differences in temporal lactate dehydrogenase release patterns suggested an anti-ischemic effect by mild hypothermia, while IPC and RIC preferentially targeted reperfusion injury. In conclusion, additive underlying mechanisms seem to provide an additive effect of mild hypothermia and IPC, whereas the more clinically applicable RIC does not add cardioprotection beyond mild hypothermia.
Highly sensitive non-enzymatic electrochemical glucose sensor based on dumbbell-shaped double-shelled hollow nanoporous CuO/ZnO microstructures
Authors: Haghparas Zahra , Kordrostami Zoheir , Sorouri Mohsen , Rajabzadeh Maryam , Khalifeh Reza
Published: January 2021

A high-performance non-enzymatic glucose sensor based on hybrid metal-oxides is proposed. Dumbbell-shaped double-shelled hollow nanoporous CuO/ZnO microstructures (CuO/ZnO-DSDSHNM) were prepared via the hydrothermal method using pluronic F-127 as a surfactant. This structure is studied by various physicochemical characterizations such as scanning electron microscopy, X-ray diffraction spectroscopy, inductively coupled plasma atomic emission spectroscopy, elemental mapping techniques, X-ray photoelectron spectroscopy, and transmission electron microscopy. This unique CuO/ZnO-DSDSHNM provides both a large surface area and an easy penetrable structure facilitating improved electrochemical reactivity toward glucose oxidation. The prepared CuO/ZnO-DSDSHNM was used over the glassy carbon electrode (GCE) as the active material for glucose detection and then coated by Nafion to provide the proposed Nafion/CuO/ZnO-DSDSHNM/GCE. The fabricated glucose sensor exhibits an extremely wide dynamic range from 500 nM to 100 mM, a sensitivity of 1536.80 µA mM−1 cm−2, a low limit of detection of 357.5 nM, and a short response time of 1.60 s. The proposed sensor also showed long-term stability, good reproducibility, favorable repeatability, excellent selectivity, and satisfactory applicability for glucose detection in human serum samples. The achieved high-performance glucose sensing based on Nafion/CuO/ZnO-DSDSHNM/GCE shows that both the material synthesis and the sensor fabrication methods have been promising and they can be used in future researches.
Impacts of monocular, binocular, and functional visual acuity on vision-related quality of life in patients with type 2 diabetes
Authors: Liao Kuo-Meng , Wu Wei-Chi , Jang Yuh , Su Fan-Ya , Tsai Li-Ting
Published: January 2021

Although the association between visual acuity (VA) and vision-related quality of life (VRQoL) has been well reported in patients with type 2 diabetes mellitus (T2DM), little is known about how unilateral and bilateral VA affects daily performance in such patients. For this cross-sectional study, patients were recruited from the Diabetes Shared Care Network of the Division of Endocrinology and Metabolism, Zhong-Xiao Branch, Taipei City Hospital in Taiwan. Ninety patients with T2DM (51 men and 39 women) with a mean age of 60.3 ± 10.5 (standard deviation) years, 47% of whom had diabetic retinopathy, were included. The purposes were to compare the impacts of VA in the better eye, both eyes, and three forms of functional acuity scores (FAS) on VRQoL in patients with T2DM. VRQoL and corrected VA were assessed with the 25-item National Eye Institute Visual Function Questionnaire (NEI VFQ-25) and Early Treatment Diabetic Retinopathy Study (ETDRS) chart, respectively. Three FAS algorithms proposed by Colenbrander and the American Medical Association were used to assess FAS. Regression analyses were performed to determine the correlations among the five types of VA, the original composite scores, and the Rasch-calibrated composite scores of the NEI VFQ-25 on all patients with T2DM and on the same patients stratified by diabetic retinopathy (DR) and no-DR. The VA of both eyes had a higher impact on VRQoL and revealed a lower reduction estimated by the two forms of composite scores than did the VA of the better eye and three FAS algorithms (compared with binocular VA β estimates, − 14.5%, − 15.8%, − 29.3%, and − 11.8% for original composite scores, and − 16.1%, − 14.0%, − 24.6%, and 10.3% for Rasch-calibrated composite scores). When the T2DM group was stratified into DR and no-DR groups, significant associations between VA and VRQoL were observed only in the DR group. The VA of both eyes also had the greatest impact and reduction after stratification. The results indicated that unilateral better-eye VA and VA estimated by the three FAS algorithms seems to underestimate the impact of visual impairment on self-report VRQoL in patients with T2DM. This study provides empirical support for the importance of binocular VA assessment in regular clinical diabetes eye care.
Evaluation of inflammation and follicle depletion during ovarian ageing in mice
Authors: Lliberos Carolina , Liew Seng H. , Zareie Pirooz , La Gruta Nicole L. , Mansell Ashley , Hutt Karla
Published: January 2021

Reproductive ageing in females is defined by a progressive decline in follicle number and oocyte quality. This is a natural process that leads to the loss of fertility and ovarian function, cycle irregularity and eventually menopause or reproductive senescence. The factors that underlie the natural depletion of follicles throughout reproductive life are poorly characterised. It has been proposed that inflammatory processes and fibrosis might contribute to ovarian ageing. To further investigate this possibility, we evaluated key markers of inflammation and immune cell populations in the ovaries of 2, 6, 12 and 18-month-old C57BL/6 female mice. We report that the decrease in follicle numbers over the reproductive lifespan was associated with an increase in the intra-ovarian percentage of CD4 + T cells, B cells and macrophages. Serum concentration and intra-ovarian mRNA levels of several pro-inflammatory cytokines, including IL-1α/β, TNF-α, IL-6, and inflammasome genes ASC and NLRP3, were significantly increased with age. Fibrosis levels, as determined by picrosirius red staining for collagen I and III, were unchanged up to 18 months of age. Collectively, these data suggest that inflammation could be one of the mechanisms responsible for the age-related regulation of follicle number, but the role of fibrosis is unclear. Further studies are now required to determine if there is a causative relationship between inflammation and follicle depletion as females age.
Effects of climate change and land cover on the distributions of a critical tree family in the Philippines
Authors: Pang Sean E. H. , De Alban Jose Don T. , Webb Edward L.
Published: January 2021

Southeast Asian forests are dominated by the tree family Dipterocarpaceae, whose abundance and diversity are key to maintaining the structure and function of tropical forests. Like most biodiversity, dipterocarps are threatened by deforestation and climate change, so it is crucial to understand the potential impacts of these threats on current and future dipterocarp distributions. We developed species distribution models (SDMs) for 19 species of dipterocarps in the Philippines, which were projected onto current and two 2070 representative concentration pathway (RCP) climate scenarios, RCP 4.5 and 8.5. Current land cover was incorporated as a post-hoc correction to restrict projections onto intact habitats. Land cover correction alone reduced current species distributions by a median 67%, and within protected areas by 37%. After land cover correction, climate change reduced distributions by a median 16% (RCP 4.5) and 27% (RCP 8.5) at the national level, with similar losses in protected areas. There was a detectable upward elevation shift of species distributions, consisting of suitable habitat losses below 300 m and gains above 600 m. Species-rich stable areas of continued habitat suitability (i.e., climate macrorefugia) fell largely outside current delineations of protected areas, indicating a need to improve protected area planning. This study highlights how SDMs can provide projections that can inform protected area planning in the tropics.
State-dependent bioelectronic interface to control bladder function
Authors: Hokanson James A. , Langdale Christopher L. , Sridhar Arun , Milliken Phil , Grill Warren M.
Published: January 2021

Electrical stimulation therapies to promote bladder filling and prevent incontinence deliver continuous inhibitory stimulation, even during bladder emptying. However, continuous inhibitory stimulation that increases bladder capacity (BC) can reduce the efficiency of subsequent voiding (VE). Here we demonstrate that state-dependent stimulation, with different electrical stimulation parameters delivered during filling and emptying can increase both BC and VE relative to continuous stimulation in rats and cats of both sexes. We show that continuous 10 Hz pudendal nerve stimulation increased BC (120–180% of control) but decreased VE (12–71%, relative to control). In addition to increasing BC, state-dependent stimulation in both rats and cats increased VE (280–759% relative to continuous stimulation); motor bursting in cats increased VE beyond the control (no stimulation) condition (males: 323%; females: 161%). These results suggest that a bioelectronic bladder pacemaker can treat complex voiding disorders, including both incontinence and retention, which paradoxically are often present in the same individual.
Population history and ecology, in addition to climate, influence human stature and body proportions
Authors: Pomeroy Emma , Stock Jay T. , Wells Jonathan C. K.
Published: January 2021

Worldwide variation in human stature and limb proportions is widely accepted to reflect thermal adaptation, but the contribution of population history to this variation is unknown. Furthermore, stature and relative lower limb length (LLL) show substantial plastic responses to environmental stressors, e.g., nutrition, pathogen load, which covary with climate. Thus ecogeographic patterns may go beyond temperature-based selection. We analysed global variation in stature, sitting height and absolute and relative LLL using large worldwide samples of published anthropometric data from adult male (n = 571) and female (n = 268) populations in relation to temperature, humidity, and net primary productivity (NPP). Population history was modeled using spatial eigenvector mapping based on geographic distances reflecting the hypothesized pattern for the spread of modern humans out of Africa. Regression models account for ~ 50% of variation in most morphological variables. Population history explains slightly more variation in stature, sitting height and LLL than the environmental/climatic variables. After adjusting for population history, associations between (usually maximum) temperature and LLL are consistent with Allen's "rule" and may drive similar relationships with stature. NPP is a consistent negative predictor of anthropometry, which may reflect the growth-limiting effects of lower environmental resource accessibility (inversely related to NPP) and/or pathogen load.
Modeling and analyzing cross-transmission dynamics of related information co-propagation
Authors: Yin Fulian , Shao Xueying , Tang Biao , Xia Xinyu , Wu Jianhong
Published: January 2021

The dissemination of one public hot event is usually affected by some related information, and the implication of co-propagation by different information is critical for the integrated analysis. To help in designing effective communication strategies during the whole event, we propose the cross-transmission susceptible-forwarding-immune (CT-SFI) model to describe the dynamics of co-propagation particularly with focus on the cross-transmission effects. This model is based on the forwarding quantity and takes into account the behavior that users may have a strong attraction or continuous attraction within or without an active time after contacting one information. Data fitting using the real data of Chinese Sina-microblog can accurately parameterize the model and parameter sensitivity analysis gives some strategies for co-propagation.
Pulmonary adiaspiromycosis in armadillos killed by motor vehicle collisions in Brazil
Authors: Navas-Suárez Pedro Enrique , Sacristán Carlos , Díaz-Delgado Josue , Yogui Débora R. , Alves Mario Henrique , Fuentes-Castillo Danny , Ospina-Pinto Catalina , Zamana Roberta Ramblas , Desbiez Arnaud Leonard Jean , Catão-Dias Jose Luiz
Published: January 2021

Knowledge of infectious diseases in wildlife provides important information for preventing potential outbreaks of zoonotic diseases. Adiaspiromycosis is a neglected human disease caused by dimorphic Onygenales fungi. The disease is produced by the inflammatory response against growing adiaspores, leading to granulomatous pneumonia. In humans, adiaspiromycosis is relevant in immunosuppressed patients. In animals, it is associated with pneumonia in fossorial species. Given the potential role of armadillos in the epidemiology of adiaspiromycosis, in this study, we sought to investigate the occurrence and pathological features of adiaspiromycosis in roadkilled armadillos. In total, 54 armadillo carcasses were suitable for postmortem pathologic examinations between February 2017 and 2020. Adiaspores, associated with granulomatous lesions, were observed in ten six-banded (Euphractus sexcinctus) and two southern naked-tailed armadillos (Cabassous unicinctus). A previously uncharacterized Onygenales species was molecularly identified in two E. sexcinctus. In summary, herein we report 12 cases of pulmonary adiaspiromycosis (PA) in two species of free-living armadillos in Brazil. Both, the morphology of the fungus, as well as the histopathological findings (granulomatous inflammatory response to adiaspores) are consistent with PA; however, as the molecular identification differs from the reported species, the potential impact of this fungus for human PA is unknown, and we cannot rule out its impact on public health.
Relationship between distribution and severity of non-perfusion and cytokine levels and macular thickness in branch retinal vein occlusion
Authors: Ryu Gahyung , Noh Donghyoun , van Hemert Jano , Sadda SriniVas R. , Sagong Min
Published: January 2021

We aimed to investigate the relationship between non-perfusion on ultra-widefield angiography (UWF FA) and aqueous cytokine levels and central macular thickness (CMT) in eyes with branch retinal vein occlusion (BRVO). Thirty-five eyes with treatment-naïve BRVO were included. Non-perfusion area (NPA) for partial and complete ischemia was manually segmented and the ischemic index (ISI) for each was calculated using stereographically projected UWF FA for four different retinal zones. Partial and complete ischemia had different regional predominance. Partial ischemia was predominant in the posterior regions, while complete ischemia was predominant in the periphery. And partial ischemic area, located posterior to far periphery, showed significant correlation with central macular thickness and concentrations of angiogenic and inflammatory cytokines, while complete ischemic area showed no correlation with any of the parameters. Taken together, partial but not complete ischemia, particularly in the more posterior retina, was associated with higher cytokine levels and more severe macular edema in eyes with BRVO. These findings would help us to better understand the different clinical significance of ischemia in BRVO depending on the severity and regional distribution.
Searching for a UV-filter in the eyes of high-flying birds
Authors: Zawadzka Malgorzata , Ràcz Beatrix , Ambrosini Dario , Görbitz Carl Henrik , Morth Jens Preben , Wilkins Alistair L. , Østeby Anja , Elgstøen Katja Benedikte Prestø , Lundanes Elsa , Rise Frode , Ringvold Amund , Wilson Steven Ray
Published: January 2021

The eye lens is a unique organ as no cells can be replaced throughout life. This makes it decisive that the lens is protected against damaging UV-radiation. An ultraviolet (UV)-absorbing compound of unknown identity is present in the aqueous humor of geese (wild and domestic) and other birds flying at high altitudes. A goose aqueous humor extract, that was believed to contain the UV protective compound which was designated as “compound X”, was fractionated and examined using a variety of spectroscopic techniques including LC–MS and high field one- and two dimensional-NMR methods. A series of compounds were identified but none of them appeared to be the UV protective “compound X”. It may be that the level of the UV protective compound in goose aqueous humor is much less than the compounds identified in our investigation, or it may have been degraded by the isolation and chromatographic purification protocols used in our investigations.
An atlas for human brain myelin content throughout the adult life span
Authors: Dvorak Adam V. , Swift-LaPointe Taylor , Vavasour Irene M. , Lee Lisa Eunyoung , Abel Shawna , Russell-Schulz Bretta , Graf Carina , Wurl Anika , Liu Hanwen , Laule Cornelia , Li David K. B. , Traboulsee Anthony , Tam Roger , Boyd Lara A. , MacKay Alex L. , Kolind Shannon H.
Published: January 2021

Myelin water imaging is a quantitative neuroimaging technique that provides the myelin water fraction (MWF), a metric highly specific to myelin content, and the intra-/extra-cellular T2 (IET2), which is related to water and iron content. We coupled high-resolution data from 100 adults with gold-standard methodology to create an optimized anatomical brain template and accompanying MWF and IET2 atlases. We then used the MWF atlas to characterize how myelin content relates to demographic factors. In most brain regions, myelin content followed a quadratic pattern of increase during the third decade of life, plateau at a maximum around the fifth decade, then decrease during later decades. The ranking of mean myelin content between brain regions remained consistent across age groups. These openly available normative atlases can facilitate evaluation of myelin imaging results on an individual basis and elucidate the distribution of myelin content between brain regions and in the context of aging.
Serum levels and gene polymorphisms of angiopoietin 2 in systemic lupus erythematosus patients
Authors: Wang Jia-Min , Xu Wang-Dong , Yuan Zhi-Chao , Wu Qian , Zhou Jie , Huang An-Fang
Published: January 2021

This study aimed to discuss association between serum Angiopoietin2 (Ang2) levels, Ang2 gene polymorphisms and systemic lupus erythematosus (SLE) susceptibility. It was carried out by 235 SLE, 342 other inflammatory autoimmune diseases patients and 380 healthy individuals. Serum Ang2 levels was examinated by ELISA, and Ang2 rs12674822, rs1823375, rs1868554, rs2442598, rs3739390 and rs734701 polymorphisms were genotyped using KASP. Increased Ang2 concentrations in SLE patients were observed compared with healthy controls and patients with other inflammatory autoimmune diseases. For allelic contrast, except for rs1823375 (P = 0.058) and rs2442598 (P = 0.523), frequencies of alleles for other polymorphisms were significantly different between SLE patients and controls. Genotypes for rs12674822 (TT), rs1868554 (TT, TA and TT+TA), rs734701 (TT) were negatively correlated with SLE susceptibility (OR = 0.564 for rs12674822; OR = 0.572, OR = 0.625, OR = 0.607 for rs1868554; OR = 0.580 for rs734701). Patients carrying rs1868554 T allele and rs3739390 G allele were more likely to develop hematuria (P = 0.039; P = 0.003). The G allele frequencies of rs12674822 and rs2442598 were higher in SLE patients with proteinuria (P = 0.043; P = 0.043). GC genotype frequency of rs3739390 was higher in patients with ds-DNA (+) (P = 0.024). In summary, SLE had increased serum Ang2, which may be a potential biomarker, and the polymorphisms correlated with SLE.
Online media reveals a global problem of discarded containers as deadly traps for animals
Authors: Kolenda Krzysztof , Pawlik Monika , Kuśmierek Natalia , Smolis Adrian , Kadej Marcin
Published: January 2021

The widespread occurrence of litter is a severe threat to global ecosystems. We have analyzed online media, to assess the diversity of animals that are prone to getting trapped in discarded containers and check which kind of containers is the most common trap for animals. A total of 503 records from around the world (51 countries, 6 continents) have been found. These include invertebrates (17 taxa, ca.1050 dead individuals), and vertebrates (98 taxa, 496 individuals including 44 carcasses). The latter group was most frequently represented by mammals (78.5% of all cases), then reptiles (15.3%), birds (1.2%), fish (1.0%) and amphibians (0.4%). Nearly 12.5% of the determined vertebrates are classified as vulnerable, endangered or critically endangered, according to the IUCN. Although most trapped individuals were smaller animals, bigger ones such as monitor lizards (Varanus spp.) or large carnivores were also recorded. In most cases, animals were trapped in glass or plastic jars (32.4%), drink cans (16.5%), and steel cans (16.3%). Our results demonstrate that discarded containers can be a threat to all major groups of animals. In order to address this phenomenon, it is necessary to decrease a global production of debris, implement container deposit legislation and organize repeatable cleanup actions.
Identifying intracellular signaling modules and exploring pathways associated with breast cancer recurrence
Authors: Chen Xi , Gu Jinghua , Neuwald Andrew F. , Hilakivi-Clarke Leena , Clarke Robert , Xuan Jianhua
Published: January 2021

Exploring complex modularization of intracellular signal transduction pathways is critical to understanding aberrant cellular responses during disease development and drug treatment. IMPALA (Inferred Modularization of PAthway LAndscapes) integrates information from high throughput gene expression experiments and genome-scale knowledge databases to identify aberrant pathway modules, thereby providing a powerful sampling strategy to reconstruct and explore pathway landscapes. Here IMPALA identifies pathway modules associated with breast cancer recurrence and Tamoxifen resistance. Focusing on estrogen-receptor (ER) signaling, IMPALA identifies alternative pathways from gene expression data of Tamoxifen treated ER positive breast cancer patient samples. These pathways were often interconnected through cytoplasmic genes such as IRS1/2, JAK1, YWHAZ, CSNK2A1, MAPK1 and HSP90AA1 and significantly enriched with ErbB, MAPK, and JAK-STAT signaling components. Characterization of the pathway landscape revealed key modules associated with ER signaling and with cell cycle and apoptosis signaling. We validated IMPALA-identified pathway modules using data from four different breast cancer cell lines including sensitive and resistant models to Tamoxifen. Results showed that a majority of genes in cell cycle/apoptosis modules that were up-regulated in breast cancer patients with short survivals (< 5 years) were also over-expressed in drug resistant cell lines, whereas the transcription factors JUN, FOS, and STAT3 were down-regulated in both patient and drug resistant cell lines. Hence, IMPALA identified pathways were associated with Tamoxifen resistance and an increased risk of breast cancer recurrence. The IMPALA package is available at https://dlrl.ece.vt.edu/software/.
Stress reactivity elicits a tissue-specific reduction in telomere length in aging zebrafish (Danio rerio)
Authors: Evans James R. , Torres-Pérez Jose V. , Miletto Petrazzini Maria Elena , Riley Riva , Brennan Caroline H.
Published: January 2021

Individual differences in personality are associated with variation in healthy aging. Health behaviours are often cited as the likely explanation for this association; however, an underlying biological mechanism may also exist. Accelerated leukocyte telomere shortening is implicated in multiple age-related diseases and is associated with chronic activation of the hypothalamus–pituitary–adrenal (HPA) axis, providing a link between stress-related personality differences and adverse health outcomes. However, the effects of the HPA axis are tissue specific. Thus, leukocyte telomere length may not accurately reflect telomere length in disease-relevant tissues. Here, we examined the correlation between stress reactivity and telomere length in heart and brain tissue in young (6–9 month) and aging (18 month) zebrafish. Stress reactivity was assessed by tank diving and through gene expression. Telomere length was assessed using quantitative PCR. We show that aging zebrafish have shorter telomeres in both heart and brain. Telomere length was inversely related to stress reactivity in heart but not brain of aging individuals. These data support the hypotheses that an anxious predisposition contributes to accelerated telomere shortening in heart tissue, which may have important implications for our understanding of age-related heart disease, and that stress reactivity contributes to age-related telomere shortening in a tissue-specific manner.