bluuebunny/crossref_metadata_2025 huggingface dataset:
Table S7 from Correlates of Prenatal and Early-Life Tobacco Smoke Exposure and Frequency of Common Gene Deletions in Childhood Acute Lymphoblastic Leukemia
Authors: de Smith Adam J. , Kaur Maneet , Gonseth Semira , Endicott Alyson , Selvin Steve , Zhang Luoping , Roy Ritu , Shao Xiaorong , Hansen Helen M. , Kang Alice Y. , Walsh Kyle M. , Dahl Gary V. , McKean-Cowdin Roberta , Metayer Catherine , Wiemels Joseph L.
Published: March 2023

Association analyses of joint effects of prenatal and postnatal tobacco smoke exposures on the number of deletions in the child's leukemia using multivariable Poisson regressions.
Supplementary materials and methods from S100A4 Elevation Empowers Expression of Metastasis Effector Molecules in Human Breast Cancer
Authors: Ismail Thamir M. , Bennett Daimark , Platt-Higgins Angela M. , Al-Medhity Morteta , Barraclough Roger , Rudland Philip S.
Published: March 2023

supplemental materials and methods.
Table S3 from Correlates of Prenatal and Early-Life Tobacco Smoke Exposure and Frequency of Common Gene Deletions in Childhood Acute Lymphoblastic Leukemia
Authors: de Smith Adam J. , Kaur Maneet , Gonseth Semira , Endicott Alyson , Selvin Steve , Zhang Luoping , Roy Ritu , Shao Xiaorong , Hansen Helen M. , Kang Alice Y. , Walsh Kyle M. , Dahl Gary V. , McKean-Cowdin Roberta , Metayer Catherine , Wiemels Joseph L.
Published: March 2023

Association analyses between tobacco smoke exposures and the number of deletions in the child's leukemia using multivariable Poisson regressions, stratified by B-ALL and cytogenetic subtypes ETV6-RUNX1 fusion and high hyperdiploidy.
Supplemental Table S2 from Correlates of Prenatal and Early-Life Tobacco Smoke Exposure and Frequency of Common Gene Deletions in Childhood Acute Lymphoblastic Leukemia
Authors: de Smith Adam J. , Kaur Maneet , Gonseth Semira , Endicott Alyson , Selvin Steve , Zhang Luoping , Roy Ritu , Shao Xiaorong , Hansen Helen M. , Kang Alice Y. , Walsh Kyle M. , Dahl Gary V. , McKean-Cowdin Roberta , Metayer Catherine , Wiemels Joseph L.
Published: March 2023

Distribution of deletions by gene and race/ethnicity in childhood ALL cases from the CCLS.
Supplementary Table S2 from Extracellular Matrix Receptor Expression in Subtypes of Lung Adenocarcinoma Potentiates Outgrowth of Micrometastases
Authors: Stevens Laura E. , Cheung William K.C. , Adua Sally J. , Arnal-Estapé Anna , Zhao Minghui , Liu Zongzhi , Brewer Kelly , Herbst Roy S. , Nguyen Don X.
Published: March 2023

Predicted HMMR targeting miRNAs. Results are from the combined Cbio and MIRANDA correlation analysis. Provided as Excel file.
Supplemental Material from Correlates of Prenatal and Early-Life Tobacco Smoke Exposure and Frequency of Common Gene Deletions in Childhood Acute Lymphoblastic Leukemia
Authors: de Smith Adam J. , Kaur Maneet , Gonseth Semira , Endicott Alyson , Selvin Steve , Zhang Luoping , Roy Ritu , Shao Xiaorong , Hansen Helen M. , Kang Alice Y. , Walsh Kyle M. , Dahl Gary V. , McKean-Cowdin Roberta , Metayer Catherine , Wiemels Joseph L.
Published: March 2023

Revised Supplemental Material
Supplementary Table S1 from Extracellular Matrix Receptor Expression in Subtypes of Lung Adenocarcinoma Potentiates Outgrowth of Micrometastases
Authors: Stevens Laura E. , Cheung William K.C. , Adua Sally J. , Arnal-Estapé Anna , Zhao Minghui , Liu Zongzhi , Brewer Kelly , Herbst Roy S. , Nguyen Don X.
Published: March 2023

Extended list of genes (overall FDR p-value<0.05) from ToppGene network analysis from Figure 1. Score=-log p-value; +/- based on fold change.
Supplementary Tables from Mathematical Modeling of Tumor–Tumor Distant Interactions Supports a Systemic Control of Tumor Growth
Authors: Benzekry Sebastien , Lamont Clare , Barbolosi Dominique , Hlatky Lynn , Hahnfeldt Philip
Published: March 2023

Table S1: models equations. Table S2: goodness-of-fit metrics of these three single tumor growth models. Table S3: parameter values and identifiability of the Gompertz, power law and ``proliferation inhibition" model for the single tumor growth fits
Supplementary Figures 6-10 from Mathematical Modeling of Tumor–Tumor Distant Interactions Supports a Systemic Control of Tumor Growth
Authors: Benzekry Sebastien , Lamont Clare , Barbolosi Dominique , Hlatky Lynn , Hahnfeldt Philip
Published: March 2023

Additional double-tumors models fits and residuals analysis
Supplementary Figure 11 from Mathematical Modeling of Tumor–Tumor Distant Interactions Supports a Systemic Control of Tumor Growth
Authors: Benzekry Sebastien , Lamont Clare , Barbolosi Dominique , Hlatky Lynn , Hahnfeldt Philip
Published: March 2023

Additional fits of 10 remaining animals of the control group under the "proliferation inhibition" model
Supplementary Figure 1 from Mathematical Modeling of Tumor–Tumor Distant Interactions Supports a Systemic Control of Tumor Growth
Authors: Benzekry Sebastien , Lamont Clare , Barbolosi Dominique , Hlatky Lynn , Hahnfeldt Philip
Published: March 2023

Figure S1: plot of all tumor volumes for double and single (control) tumor groups
Supplementary Tables 1 and 2 from Plk4 Promotes Cancer Invasion and Metastasis through Arp2/3 Complex Regulation of the Actin Cytoskeleton
Authors: Kazazian Karineh , Go Christopher , Wu Hannah , Brashavitskaya Olga , Xu Roland , Dennis James W. , Gingras Anne-Claude , Swallow Carol J.
Published: March 2023

Supplementary Table 1. siRNA Supplementary Table 2. RT-PCR primers
Supplementary Table 1 from Role of Megakaryocytes in Breast Cancer Metastasis to Bone
Authors: Jackson Walter , Sosnoski Donna M. , Ohanessian Sara E. , Chandler Paige , Mobley Adam , Meisel Kacey D. , Mastro Andrea M.
Published: March 2023

MKs in metastatic breast cancer patients and matched samples
Supplementary Figure 4 from Role of Megakaryocytes in Breast Cancer Metastasis to Bone
Authors: Jackson Walter , Sosnoski Donna M. , Ohanessian Sara E. , Chandler Paige , Mobley Adam , Meisel Kacey D. , Mastro Andrea M.
Published: March 2023

Quantitation of mouse megakaryocyte progenitors in the presence of cancer cell and osteoblast conditioned medium.
Supplementary Figure 3 from Role of Megakaryocytes in Breast Cancer Metastasis to Bone
Authors: Jackson Walter , Sosnoski Donna M. , Ohanessian Sara E. , Chandler Paige , Mobley Adam , Meisel Kacey D. , Mastro Andrea M.
Published: March 2023

Ploidy patterns determined by flow cytometry of MEG-01 cells treated with various cancer cell and osteoblast cell conditioned media.
Supplementary Figures 7-9 from Plk4 Promotes Cancer Invasion and Metastasis through Arp2/3 Complex Regulation of the Actin Cytoskeleton
Authors: Kazazian Karineh , Go Christopher , Wu Hannah , Brashavitskaya Olga , Xu Roland , Dennis James W. , Gingras Anne-Claude , Swallow Carol J.
Published: March 2023

Fig S7. Plk4 knockdown in MDA-MB-231, HeLa and MDA-MB-435 cancer cell lines. Fig S8. Plk4 interacts physically with Arp2. Fig S9. Arp2 regulates cancer cell spreading and migration.
Supplementary Figure 1 from Role of Megakaryocytes in Breast Cancer Metastasis to Bone
Authors: Jackson Walter , Sosnoski Donna M. , Ohanessian Sara E. , Chandler Paige , Mobley Adam , Meisel Kacey D. , Mastro Andrea M.
Published: March 2023

TPO knockout mouse genotyping
Supplementary figure legend from Suppression of Type I IFN Signaling in Tumors Mediates Resistance to Anti-PD-1 Treatment That Can Be Overcome by Radiotherapy
Authors: Wang Xiaohong , Schoenhals Jonathan E. , Li Ailin , Valdecanas David R. , Ye Huiping , Zang Fenglin , Tang Chad , Tang Ming , Liu Chang-Gong , Liu Xiuping , Krishnan Sunil , Allison James P. , Sharma Padmanee , Hwu Patrick , Komaki Ritsuko , Overwijk Willem W. , Gomez Daniel R. , Chang Joe Y. , Hahn Stephen M. , Cortez Maria Angelica , Welsh James W.
Published: March 2023

All the figure legend for supplementary figures
Supplementary Figures 1-3 from Plk4 Promotes Cancer Invasion and Metastasis through Arp2/3 Complex Regulation of the Actin Cytoskeleton
Authors: Kazazian Karineh , Go Christopher , Wu Hannah , Brashavitskaya Olga , Xu Roland , Dennis James W. , Gingras Anne-Claude , Swallow Carol J.
Published: March 2023

Fig S1. Plk4 knockdown in cancer cell lines does not significantly alter viability or proliferation. Fig S2. Plk4 regulates cancer cell migration. Fig S3. Plk4 overexpression increases HeLa migration.
Figure S3. Immune suppressive MDSCs and regulatory T cell percentages in parental and anti-PD-1 resistant tumor models. from Suppression of Type I IFN Signaling in Tumors Mediates Resistance to Anti-PD-1 Treatment That Can Be Overcome by Radiotherapy
Authors: Wang Xiaohong , Schoenhals Jonathan E. , Li Ailin , Valdecanas David R. , Ye Huiping , Zang Fenglin , Tang Chad , Tang Ming , Liu Chang-Gong , Liu Xiuping , Krishnan Sunil , Allison James P. , Sharma Padmanee , Hwu Patrick , Komaki Ritsuko , Overwijk Willem W. , Gomez Daniel R. , Chang Joe Y. , Hahn Stephen M. , Cortez Maria Angelica , Welsh James W.
Published: March 2023

This figure shows that the immune suppressive MDSCs and regulatory T cell percentages in parental and anti-PD-1 resistant tumor models.
Figure S2. Downregulation of MHC class I on CD11b+Gr-1+ cells from anti-PD-1 resistant tumors. from Suppression of Type I IFN Signaling in Tumors Mediates Resistance to Anti-PD-1 Treatment That Can Be Overcome by Radiotherapy
Authors: Wang Xiaohong , Schoenhals Jonathan E. , Li Ailin , Valdecanas David R. , Ye Huiping , Zang Fenglin , Tang Chad , Tang Ming , Liu Chang-Gong , Liu Xiuping , Krishnan Sunil , Allison James P. , Sharma Padmanee , Hwu Patrick , Komaki Ritsuko , Overwijk Willem W. , Gomez Daniel R. , Chang Joe Y. , Hahn Stephen M. , Cortez Maria Angelica , Welsh James W.
Published: March 2023

This figure shows that CD11b+Gr-1+ cells from anti-PD-1 resistant tumors also show downregulation of MHC class I molecules
Supplemental Table S4 from Modeling Alveolar Soft Part Sarcoma Unveils Novel Mechanisms of Metastasis
Authors: Tanaka Miwa , Homme Mizuki , Yamazaki Yukari , Shimizu Rikuka , Takazawa Yutaka , Nakamura Takuro
Published: March 2023

Genes upregulated in eMCs expressing ASPSCR1-TFE3.
Supplementary Tables S1-S5 from Transcriptional Regulator CNOT3 Defines an Aggressive Colorectal Cancer Subtype
Authors: Cejas Paloma , Cavazza Alessia , Yandava C.N. , Moreno Victor , Horst David , Moreno-Rubio Juan , Burgos Emilio , Mendiola Marta , Taing Len , Goel Ajay , Feliu Jaime , Shivdasani Ramesh A.
Published: March 2023

Genetic characteristics of CRC specimens used for histone ChIPseq and of the resulting ChIP-seq libraries (S1); Ontology of genes enriched for CNOT3 binding within 30 kb of the transcription start site (S2); Gene sets used for GSEA analysis (S3); TF binding sites in given gene sets relative to the background of all bound genes (S4); Features of CRC specimens used for IHC and survival analyses (S5).
Supplemental Table S2 from Modeling Alveolar Soft Part Sarcoma Unveils Novel Mechanisms of Metastasis
Authors: Tanaka Miwa , Homme Mizuki , Yamazaki Yukari , Shimizu Rikuka , Takazawa Yutaka , Nakamura Takuro
Published: March 2023

Upregulated genes in ASPS tumors and eMCs expressing ASPSCR1-TFE3.
Supplementary Figures S1-S5 from Transcriptional Regulator CNOT3 Defines an Aggressive Colorectal Cancer Subtype
Authors: Cejas Paloma , Cavazza Alessia , Yandava C.N. , Moreno Victor , Horst David , Moreno-Rubio Juan , Burgos Emilio , Mendiola Marta , Taing Len , Goel Ajay , Feliu Jaime , Shivdasani Ramesh A.
Published: March 2023

Profiles of marked nucleosomes in Ad-Ca pairs (S1); Expression of CNOT3 and TRIM28 in CRC and normal colon epithelium (S2); Expression and requirements for CNOT3 in CRC cell lines (S3); Features of CNOT3 chromatin immunoprecipitation (S4); Clinical significance of CRCs with high CNOT3+ cell fractions or TRIM28 overexpression (S5).
Supplemental Table S1 from Modeling Alveolar Soft Part Sarcoma Unveils Novel Mechanisms of Metastasis
Authors: Tanaka Miwa , Homme Mizuki , Yamazaki Yukari , Shimizu Rikuka , Takazawa Yutaka , Nakamura Takuro
Published: March 2023

The list of primers used.
Supplemental Figures S1-S4 from Modeling Alveolar Soft Part Sarcoma Unveils Novel Mechanisms of Metastasis
Authors: Tanaka Miwa , Homme Mizuki , Yamazaki Yukari , Shimizu Rikuka , Takazawa Yutaka , Nakamura Takuro
Published: March 2023

Development of the mouse ASPS model (S1); Anti-FLAG immunostaining of tumor emboli covered with non-neoplastic cells (S2); eMCs transduced with ASPSCR1 fusion genes (S3); Genes involved in the phagosome maturation pathway are upregulated in ASPS tumors and eMCs expressing ASPSCR1-TFE3 (S4).
Supplementary Table S4 from Cic Loss Promotes Gliomagenesis via Aberrant Neural Stem Cell Proliferation and Differentiation
Authors: Yang Rui , Chen Lee H. , Hansen Landon J. , Carpenter Austin B. , Moure Casey J. , Liu Heng , Pirozzi Christopher J. , Diplas Bill H. , Waitkus Matthew S. , Greer Paula K. , Zhu Huishan , McLendon Roger E. , Bigner Darell D. , He Yiping , Yan Hai
Published: March 2023

Microarray profile of HOG isogenic cell lines
Supplementary Video S1 from Cellular and Molecular Identity of Tumor-Associated Macrophages in Glioblastoma
Authors: Chen Zhihong , Feng Xi , Herting Cameron J. , Garcia Virginia Alvarez , Nie Kai , Pong Winnie W. , Rasmussen Rikke , Dwivedi Bhakti , Seby Sandra , Wolf Susanne A. , Gutmann David H. , Hambardzumyan Dolores
Published: March 2023

Dynamic modulation of CCR2 and CX3CR1 in myeloid cells isolated from tumors. With the decrease of Ly6C intensity, the cells present increased CX3CR1-GFP intensity but decreased CCR2-RFP intensity.
Supplementary Table S3 from Cic Loss Promotes Gliomagenesis via Aberrant Neural Stem Cell Proliferation and Differentiation
Authors: Yang Rui , Chen Lee H. , Hansen Landon J. , Carpenter Austin B. , Moure Casey J. , Liu Heng , Pirozzi Christopher J. , Diplas Bill H. , Waitkus Matthew S. , Greer Paula K. , Zhu Huishan , McLendon Roger E. , Bigner Darell D. , He Yiping , Yan Hai
Published: March 2023

David analysis of Cic-regulated genes.
Supplementary Table S2 from Cic Loss Promotes Gliomagenesis via Aberrant Neural Stem Cell Proliferation and Differentiation
Authors: Yang Rui , Chen Lee H. , Hansen Landon J. , Carpenter Austin B. , Moure Casey J. , Liu Heng , Pirozzi Christopher J. , Diplas Bill H. , Waitkus Matthew S. , Greer Paula K. , Zhu Huishan , McLendon Roger E. , Bigner Darell D. , He Yiping , Yan Hai
Published: March 2023

Genes that are regulated by Cic and/or EGF.
Supplementary Table 7 from Somatic Ephrin Receptor Mutations Are Associated with Metastasis in Primary Colorectal Cancer
Authors: Mathot Lucy , Kundu Snehangshu , Ljungström Viktor , Svedlund Jessica , Moens Lotte , Adlerteg Tom , Falk-Sörqvist Elin , Rendo Verónica , Bellomo Claudia , Mayrhofer Markus , Cortina Carme , Sundström Magnus , Micke Patrick , Botling Johan , Isaksson Anders , Moustakas Aristidis , Batlle Eduard , Birgisson Helgi , Glimelius Bengt , Nilsson Mats , Sjöblom Tobias
Published: March 2023

All somatic mutations found in the study.
Supplementary Table S1 from Cic Loss Promotes Gliomagenesis via Aberrant Neural Stem Cell Proliferation and Differentiation
Authors: Yang Rui , Chen Lee H. , Hansen Landon J. , Carpenter Austin B. , Moure Casey J. , Liu Heng , Pirozzi Christopher J. , Diplas Bill H. , Waitkus Matthew S. , Greer Paula K. , Zhu Huishan , McLendon Roger E. , Bigner Darell D. , He Yiping , Yan Hai
Published: March 2023

Primer list.
Figure S6 to S9 from Cic Loss Promotes Gliomagenesis via Aberrant Neural Stem Cell Proliferation and Differentiation
Authors: Yang Rui , Chen Lee H. , Hansen Landon J. , Carpenter Austin B. , Moure Casey J. , Liu Heng , Pirozzi Christopher J. , Diplas Bill H. , Waitkus Matthew S. , Greer Paula K. , Zhu Huishan , McLendon Roger E. , Bigner Darell D. , He Yiping , Yan Hai
Published: March 2023

Fig S6, QPCR validation of microarray. Fig S7 and S8, strategy of generating HOG isogenic cell lines and CHIP assay using these cell lines, Fig S9, Gross distribution of signature genes for CIC-/- human ODs.
Figure S3 to S5 from Cic Loss Promotes Gliomagenesis via Aberrant Neural Stem Cell Proliferation and Differentiation
Authors: Yang Rui , Chen Lee H. , Hansen Landon J. , Carpenter Austin B. , Moure Casey J. , Liu Heng , Pirozzi Christopher J. , Diplas Bill H. , Waitkus Matthew S. , Greer Paula K. , Zhu Huishan , McLendon Roger E. , Bigner Darell D. , He Yiping , Yan Hai
Published: March 2023

Fig S3, proliferation assay. Fig S4 and S5, differentiation assay of Cic+/+ and Cic-/- NSCs.
Figure S1_S2 from Cic Loss Promotes Gliomagenesis via Aberrant Neural Stem Cell Proliferation and Differentiation
Authors: Yang Rui , Chen Lee H. , Hansen Landon J. , Carpenter Austin B. , Moure Casey J. , Liu Heng , Pirozzi Christopher J. , Diplas Bill H. , Waitkus Matthew S. , Greer Paula K. , Zhu Huishan , McLendon Roger E. , Bigner Darell D. , He Yiping , Yan Hai
Published: March 2023

Fig S1, Genotyping Cic mice and NSCs by PCR. Fig S2, Ki67 expression in mouse brains by immunofluorescent staining.
Supplementary Figure S1,Figure S2,Figure S3,Table S1ï¼ŒTable S2ï¼ŒTable S3ï¼Œand Table S4. from MPO Promoter Polymorphism rs2333227 Enhances Malignant Phenotypes of Colorectal Cancer by Altering the Binding Affinity of AP-2α
Authors: Meng Qingtao , Wu Shenshen , Wang Yajie , Xu Jin , Sun Hao , Lu Runze , Gao Na , Yang Hongbao , Li Xiaobo , Tang Boping , Aschner Michael , Chen Rui
Published: March 2023

Supplementary Figure S1,Figure S2,Figure S3,Table S1ï¼ŒTable S2ï¼ŒTable S3ï¼Œand Table S4.
Supplemental Figure 4 from CD40 Signaling Drives Potent Cellular Immune Responses in Heterologous Cancer Vaccinations
Authors: Nimanong Supot , Ostroumov Dmitrij , Wingerath Jessica , Knocke Sarah , Woller Norman , Gürlevik Engin , Falk Christine S. , Manns Michael P. , Kühnel Florian , Wirth Thomas C.
Published: March 2023

In this figure, the liver damage induced by heterologous, DC-based immune responses is illustrated. Mice were primed with dendritic cells and subjected to different booster immunizations consisting of variable combinations of anti-CD40, Poly I:C and peptide antigen. Liver damage was assessed via ALT measurements 24 and 72h after booste immunizations
Supplemental Figure 3 from CD40 Signaling Drives Potent Cellular Immune Responses in Heterologous Cancer Vaccinations
Authors: Nimanong Supot , Ostroumov Dmitrij , Wingerath Jessica , Knocke Sarah , Woller Norman , Gürlevik Engin , Falk Christine S. , Manns Michael P. , Kühnel Florian , Wirth Thomas C.
Published: March 2023

This figure demonstrates the magnitude of DC/CoAT vaccinations induced with different agonistic antibodies (anti-CD40, anti-CD137 and anti-OX40)
Supplemental Figure 2 from CD40 Signaling Drives Potent Cellular Immune Responses in Heterologous Cancer Vaccinations
Authors: Nimanong Supot , Ostroumov Dmitrij , Wingerath Jessica , Knocke Sarah , Woller Norman , Gürlevik Engin , Falk Christine S. , Manns Michael P. , Kühnel Florian , Wirth Thomas C.
Published: March 2023

This figure demonstrates the spectrum of secreted cytokines in CD8 T cells induced by DC/CoAT vaccinations
Supplemental Figures from LIGHT Elevation Enhances Immune Eradication of Colon Cancer Metastases
Authors: Qiao Guilin , Qin Jianzhong , Kunda Nicholas , Calata Jed F. , Mahmud Dolores L. , Gann Peter , Fu Yang-Xin , Rosenberg Steven A. , Prabhakar Bellur S. , Maker Ajay V.
Published: March 2023

Supplemental figure 1 presents proliferation, apoptosis, and migration assays demonstrating that LIGHT expressing colon cancer cell lines maintain wild-type characteristics. Supplemental figure 2 provides evidence that LIGHT expressing colorectal liver metastases demonstrate increased dendritic cell infiltration and increased immunocyte homing signals.
Supplementary Methods from Combined CDK4/6 and PI3Kα Inhibition Is Synergistic and Immunogenic in Triple-Negative Breast Cancer
Authors: Teo Zhi Ling , Versaci Stephanie , Dushyanthen Sathana , Caramia Franco , Savas Peter , Mintoff Chris P. , Zethoven Magnus , Virassamy Balaji , Luen Stephen J. , McArthur Grant A. , Phillips Wayne A. , Darcy Phillip K. , Loi Sherene
Published: March 2023

Additional information on Materials and Methods including details of antibodies and reagents.
Supplemental Figure Legend from LIGHT Elevation Enhances Immune Eradication of Colon Cancer Metastases
Authors: Qiao Guilin , Qin Jianzhong , Kunda Nicholas , Calata Jed F. , Mahmud Dolores L. , Gann Peter , Fu Yang-Xin , Rosenberg Steven A. , Prabhakar Bellur S. , Maker Ajay V.
Published: March 2023

Supplemental Figure Legend from LIGHT Elevation Enhances Immune Eradication of Colon Cancer Metastases
Table S2 from A Potent, Metabolically Stable Tubulin Inhibitor Targets the Colchicine Binding Site and Overcomes Taxane Resistance
Authors: Arnst Kinsie E. , Wang Yuxi , Hwang Dong-Jin , Xue Yi , Costello Terry , Hamilton David , Chen Qiang , Yang Jinliang , Park Frank , Dalton James T. , Miller Duane D. , Li Wei
Published: March 2023

Resistance index values of DJ101 measured in drug sensitive PC-3 and DU-145 and their corresponding taxane resistant sublines.
Supplementary Methods from Genomic Landscape of Atypical Adenomatous Hyperplasia Reveals Divergent Modes to Lung Adenocarcinoma
Authors: Sivakumar Smruthy , Lucas F. Anthony San , McDowell Tina L. , Lang Wenhua , Xu Li , Fujimoto Junya , Zhang Jianjun , Futreal P. Andrew , Fukuoka Junya , Yatabe Yasushi , Dubinett Steven M. , Spira Avrum E. , Fowler Jerry , Hawk Ernest T. , Wistuba Ignacio I. , Scheet Paul , Kadara Humam
Published: March 2023

Supplementary methods including detailed methods on specimen collection and evaluation; DNA and RNA isolation; deep DNA targeted sequencing and transcriptome sequencing; identification and validation of somatic mutations; and expression analysis.
Figure S1 from A Potent, Metabolically Stable Tubulin Inhibitor Targets the Colchicine Binding Site and Overcomes Taxane Resistance
Authors: Arnst Kinsie E. , Wang Yuxi , Hwang Dong-Jin , Xue Yi , Costello Terry , Hamilton David , Chen Qiang , Yang Jinliang , Park Frank , Dalton James T. , Miller Duane D. , Li Wei
Published: March 2023

NCI-60 screening data for DJ101
Supplementary figures from Recommended Guidelines for Validation, Quality Control, and Reporting of TP53 Variants in Clinical Practice
Authors: Leroy Bernard , Ballinger Mandy L. , Baran-Marszak Fanny , Bond Gareth L. , Braithwaite Antony , Concin Nicole , Donehower Lawrence A. , El-Deiry Wafik S. , Fenaux Pierre , Gaidano Gianluca , Langerød Anita , Hellstrom-Lindberg Eva , Iggo Richard , Lehmann-Che Jacqueline , Mai Phuong L. , Malkin David , Moll Ute M. , Myers Jeffrey N. , Nichols Kim E. , Pospisilova Sarka , Ashton-Prolla Patricia , Rossi Davide , Savage Sharon A. , Strong Louise C. , Tonin Patricia N. , Zeillinger Robert , Zenz Thorsten , Fraumeni Joseph F. , Taschner Peter E.M. , Hainaut Pierre , Soussi Thierry
Published: March 2023

Supplementary figures 1, 2 and 3
Figure S8 from Proinflammatory CXCL12–CXCR4/CXCR7 Signaling Axis Drives Myc-Induced Prostate Cancer in Obese Mice
Authors: Saha Achinto , Ahn Songyeon , Blando Jorge , Su Fei , Kolonin Mikhail G. , DiGiovanni John
Published: March 2023

CXCR7 knockdown attenuates activation of STAT3, ERK and JNK signaling in HMVP2 cells
Figure S7 from Proinflammatory CXCL12–CXCR4/CXCR7 Signaling Axis Drives Myc-Induced Prostate Cancer in Obese Mice
Authors: Saha Achinto , Ahn Songyeon , Blando Jorge , Su Fei , Kolonin Mikhail G. , DiGiovanni John
Published: March 2023

CXCR4 knockdown attenuates activation of NFκB, STAT3 and JNK signaling in HMVP2 cells
Supplementary figure-2 from Mutant IDH1 Cooperates with ATRX Loss to Drive the Alternative Lengthening of Telomere Phenotype in Glioma
Authors: Mukherjee Joydeep , Johannessen Tor-Christian , Ohba Shigeo , Chow Tracy T. , Jones Lindsey , Pandita Ajay , Pieper Russell O.
Published: March 2023

Mutant IDH1 expression is associated with down- regulation of RAP1 and XRCC1
Supplementary figure-1 from Mutant IDH1 Cooperates with ATRX Loss to Drive the Alternative Lengthening of Telomere Phenotype in Glioma
Authors: Mukherjee Joydeep , Johannessen Tor-Christian , Ohba Shigeo , Chow Tracy T. , Jones Lindsey , Pandita Ajay , Pieper Russell O.
Published: March 2023

Schematics of ATRX CRISPR vector, verification of different cell lines for ALT associated characteristics, in-vivo growth and screening of off-target CRISPR effect
Figure S4 from Proinflammatory CXCL12–CXCR4/CXCR7 Signaling Axis Drives Myc-Induced Prostate Cancer in Obese Mice
Authors: Saha Achinto , Ahn Songyeon , Blando Jorge , Su Fei , Kolonin Mikhail G. , DiGiovanni John
Published: March 2023

CXCR4 and CXCR7 knockdown in HMVP2 cells
Figure S2 from Proinflammatory CXCL12–CXCR4/CXCR7 Signaling Axis Drives Myc-Induced Prostate Cancer in Obese Mice
Authors: Saha Achinto , Ahn Songyeon , Blando Jorge , Su Fei , Kolonin Mikhail G. , DiGiovanni John
Published: March 2023

CXCL12 induced migration of HMVP2 PCa cells but not normal mouse (NMVP) prostate epithelial cells.
Figure S1 from Proinflammatory CXCL12–CXCR4/CXCR7 Signaling Axis Drives Myc-Induced Prostate Cancer in Obese Mice
Authors: Saha Achinto , Ahn Songyeon , Blando Jorge , Su Fei , Kolonin Mikhail G. , DiGiovanni John
Published: March 2023

Increased mRNA expression in the SVF of obese HiMyc mice and expression of CXCL12 in cultured mASC.
Supplementary Table 1 from Mouse Models of Pediatric Supratentorial High-grade Glioma Reveal How Cell-of-Origin Influences Tumor Development and Phenotype
Authors: Sreedharan Smitha , Maturi Naga Prathyusha , Xie Yuan , Sundström Anders , Jarvius Malin , Libard Sylwia , Alafuzoff Irina , Weishaupt Holger , Fryknäs Mårten , Larsson Rolf , Swartling Fredrik J. , Uhrbom Lene
Published: March 2023

Table S1, related to Table 2. Mean AUC values were calculated from all dose-response curves generated for each group.
Supplementary Information from Loss of FOXO1 Cooperates with TMPRSS2–ERG Overexpression to Promote Prostate Tumorigenesis and Cell Invasion
Authors: Yang Yinhui , Blee Alexandra M. , Wang Dejie , An Jian , Pan Yunqian , Yan Yuqian , Ma Tao , He Yundong , Dugdale Joseph , Hou Xiaonan , Zhang Jun , Weroha S. John , Zhu Wei-Guo , Wang Y. Alan , DePinho Ronald A. , Xu Wanhai , Huang Haojie
Published: March 2023

Supplementary Information. File containing Materials and Methods, references for Materials and Methods, a table of PCR primers for genotyping and RT-qPCR studies, and Supplementary Figure legends.
Supplementary Figure 4 from Mouse Models of Pediatric Supratentorial High-grade Glioma Reveal How Cell-of-Origin Influences Tumor Development and Phenotype
Authors: Sreedharan Smitha , Maturi Naga Prathyusha , Xie Yuan , Sundström Anders , Jarvius Malin , Libard Sylwia , Alafuzoff Irina , Weishaupt Holger , Fryknäs Mårten , Larsson Rolf , Swartling Fredrik J. , Uhrbom Lene
Published: March 2023

Figure S4, related to Figure 4. Characterization of mouse neural stem cell cultures CCG/tv-a and CCC/tv-a.
Figure S2 from Loss of FOXO1 Cooperates with TMPRSS2–ERG Overexpression to Promote Prostate Tumorigenesis and Cell Invasion
Authors: Yang Yinhui , Blee Alexandra M. , Wang Dejie , An Jian , Pan Yunqian , Yan Yuqian , Ma Tao , He Yundong , Dugdale Joseph , Hou Xiaonan , Zhang Jun , Weroha S. John , Zhu Wei-Guo , Wang Y. Alan , DePinho Ronald A. , Xu Wanhai , Huang Haojie
Published: March 2023

Supplementary Figure S2. In panel A, immunohistochemistry for ERG in wild-type, Foxo1pc-/-, Pb-ERG and Foxo1pc-/-; Pb-ERG mouse prostates. In panel B, immunohistochemistry for FOXO1 in wild-type, Foxo1pc-/-, Pb-ERG and Foxo1pc-/-; Pb-ERG mouse prostates. ERG and FOXO1 are localized to the nucleus in mice where expression is expected.
Supplementary Figure 3 from Mouse Models of Pediatric Supratentorial High-grade Glioma Reveal How Cell-of-Origin Influences Tumor Development and Phenotype
Authors: Sreedharan Smitha , Maturi Naga Prathyusha , Xie Yuan , Sundström Anders , Jarvius Malin , Libard Sylwia , Alafuzoff Irina , Weishaupt Holger , Fryknäs Mårten , Larsson Rolf , Swartling Fredrik J. , Uhrbom Lene
Published: March 2023

Figure S3, related to Figure 4E. Representative photographs of double immunofluorescence stainings of GCs cultured in presence or absence of serum for 7 days.
Supplementary Data - containing figures and tables with their legends from Survival Outcomes in Cancer Patients Predicted by a Partial EMT Gene Expression Scoring Metric
Authors: George Jason T. , Jolly Mohit Kumar , Xu Shengnan , Somarelli Jason A. , Levine Herbert
Published: March 2023

This file contains the SI, including: TableS1 - evidence that our model outperforms random models); FigureS1 - additional examples of normalization applied to relevant datasets; TableS2 - additional EMT score categorizations on samples with a priori known phenotypes; FigureS2 - qPCR for relevant transcription factors for cell lines that were predicted to be hybrid E/M by our model; FigureS3 - A second experimental sample for flow cytometric cell sorting of cells that were predicted to be hybrid E/M by our model; FigureS4 - Survival analysis via separation of patients based on median VIM/CDH1 levels applied to samples detected with significant difference by our original model; FigureS5 - Survival analysis using a similar model as ours with only CDH1 and VIM as predictors applied to samples detected with significant difference by our original model; FigureS6 - Empirical EMT score distributions for large sample datasets.
Additional Supplementary Data File from Survival Outcomes in Cancer Patients Predicted by a Partial EMT Gene Expression Scoring Metric
Authors: George Jason T. , Jolly Mohit Kumar , Xu Shengnan , Somarelli Jason A. , Levine Herbert
Published: March 2023

This file contains the Supplementary Data not to be included in the SI as a separate figure, but as a data file which can be downloaded and accessed. Sheet 1 contains a list of EMT-relevant gene products created by a review of the literature. Genes are organized into columns based on the relevant citation last name on the top of each column. Those entries in color represent either epithelial (peach) or mesenchymal (blue) genes. Sheet 2 contains the total (non-redundant) list of possible predictors, along with ratios of two predictors for prominent EMT-related genes. For example, VIM/CDH1. Sheet 3 includes the top 50 normalizers selected based on their inability to resolve E,E/M and M groups (i.e. the EMT-independent normalization gene signature). Sheet 4 contains the regression coefficients for the top model CLDN7, VIM/CDH1 as used in Equations 2-4. Sheet 5 contains the primer design used in Figure S2.
Supplementary Figure 2 from Mouse Models of Pediatric Supratentorial High-grade Glioma Reveal How Cell-of-Origin Influences Tumor Development and Phenotype
Authors: Sreedharan Smitha , Maturi Naga Prathyusha , Xie Yuan , Sundström Anders , Jarvius Malin , Libard Sylwia , Alafuzoff Irina , Weishaupt Holger , Fryknäs Mårten , Larsson Rolf , Swartling Fredrik J. , Uhrbom Lene
Published: March 2023

Figure S2, related to Figure 2. Comparison of glioma development induced in neonatal and adult G/tv-a and C/tv-a wt mice.
Supplementary materials and methods from miRNA-520f Reverses Epithelial-to-Mesenchymal Transition by Targeting ADAM9 and TGFBR2
Authors: van Kampen Jasmijn G.M. , van Hooij Onno , Jansen Cornelius F. , Smit Frank P. , van Noort Paula I. , Schultz Iman , Schaapveld Roel Q.J. , Schalken Jack A. , Verhaegh Gerald W.
Published: March 2023

The supplementary materials and methods file contains a more detailed description of methods (cell culture, real-time and stem loop RT-PCR, Western blot analysis, and 3'-UTR reporter assays) that are described in the main text in brief. Methods that have not been described in the main text, because the data are not shown or only provided in the supplementary figures (Sanger DNA sequence analysis, phase-contrast imaging, and immunocytochemisty) are also described here.
Supplementary Table S1 to S7 from Clonality, Heterogeneity, and Evolution of Synchronous Bilateral Ovarian Cancer
Authors: Yin Xia , Jing Ying , Cai Mei-Chun , Ma Pengfei , Zhang Yi , Xu Cong , Zhang Meiying , Di Wen , Zhuang Guanglei
Published: March 2023

Supplementary Table S1. Clinical characteristics of unilateral and bilateral ovarian cancer patients.Supplementary Table S2: Sequencing statistics.Supplementary Table S3: All somatic exonic alterations.Supplementary Table S4: Sanger sequencing validation of mutations in SBOCs.Supplementary Table S5: Predisposition genes.Supplementary Table S6: Driver mutation analysis.Supplementary Table S7: Clonal numbers inferred by PyClone or SciClone analyses.
Supplementary Tables from miRNA-520f Reverses Epithelial-to-Mesenchymal Transition by Targeting ADAM9 and TGFBR2
Authors: van Kampen Jasmijn G.M. , van Hooij Onno , Jansen Cornelius F. , Smit Frank P. , van Noort Paula I. , Schultz Iman , Schaapveld Roel Q.J. , Schalken Jack A. , Verhaegh Gerald W.
Published: March 2023

The supplementary table file contains a table with the names and origin of the cell lines used in this study (Suppl. Table S1). It also contains four tables with nucleotide sequences of primers and oligonucleotides used for qPCR and DNA sequence analysis, and for vector cloning (Suppl. Tables S2, S3, S5 and S6), and a table describing the origin of the miRNA mimics and siRNAs used in this study (Suppl. Table S4).
Supplementary Figure 2 from ERβ-Mediated Alteration of circATP2B1 and miR-204-3p Signaling Promotes Invasion of Clear Cell Renal Cell Carcinoma
Authors: Han Zhenwei , Zhang Yong , Sun Yin , Chen Jiaqi , Chang Chawnshang , Wang Xiaolu , Yeh Shuyuan
Published: March 2023

ERβ-mediated circATP2B1 and miR-204-3p signals regulate ccRCC invasion using 3D invasion assays
Suppl Figure 1 from ERβ-Mediated Alteration of circATP2B1 and miR-204-3p Signaling Promotes Invasion of Clear Cell Renal Cell Carcinoma
Authors: Han Zhenwei , Zhang Yong , Sun Yin , Chen Jiaqi , Chang Chawnshang , Wang Xiaolu , Yeh Shuyuan
Published: March 2023

Two different shERβs, shERβ#1 and shERβ#2, can independently and effectively knock down ERβ and regulate ERβ downstream signals in RCC cells.
Supplementary Table S2 from Circadian Clock Gene Bmal1 Inhibits Tumorigenesis and Increases Paclitaxel Sensitivity in Tongue Squamous Cell Carcinoma
Authors: Tang Qingming , Cheng Bo , Xie Mengru , Chen Yatao , Zhao Jiajia , Zhou Xin , Chen Lili
Published: March 2023

Primers sequences used in qRT-PCR, CHIP analysis, target genes knockdown and overexpression
Supplementary Material and Methods from Circadian Clock Gene Bmal1 Inhibits Tumorigenesis and Increases Paclitaxel Sensitivity in Tongue Squamous Cell Carcinoma
Authors: Tang Qingming , Cheng Bo , Xie Mengru , Chen Yatao , Zhao Jiajia , Zhou Xin , Chen Lili
Published: March 2023

Supplementary Material and Methods
Supplementary Figure S3 from Circadian Clock Gene Bmal1 Inhibits Tumorigenesis and Increases Paclitaxel Sensitivity in Tongue Squamous Cell Carcinoma
Authors: Tang Qingming , Cheng Bo , Xie Mengru , Chen Yatao , Zhao Jiajia , Zhou Xin , Chen Lili
Published: March 2023

Knockdown of TERT increases paclitaxel sensitivity in SCC9 cells
Supplementary Video S7 from Mitosis-Mediated Intravasation in a Tissue-Engineered Tumor–Microvessel Platform
Authors: Wong Andrew D. , Searson Peter C.
Published: March 2023

Tumor cell mitosis at the ECM-vessel interface without intravasation.
Supplementary Video S6 from Mitosis-Mediated Intravasation in a Tissue-Engineered Tumor–Microvessel Platform
Authors: Wong Andrew D. , Searson Peter C.
Published: March 2023

Tumor cell rounding and intravasation.
Supplementary Video S5 from Mitosis-Mediated Intravasation in a Tissue-Engineered Tumor–Microvessel Platform
Authors: Wong Andrew D. , Searson Peter C.
Published: March 2023

Mitosis-mediated intravasation.
Supplementary Video S3 from Mitosis-Mediated Intravasation in a Tissue-Engineered Tumor–Microvessel Platform
Authors: Wong Andrew D. , Searson Peter C.
Published: March 2023

Entry and exit from the ECM-vessel interface of MDA-MB-231 breast cancer cells (BCC).
Supplementary Table S4-S8 from Multiscale Modeling of Inflammation-Induced Tumorigenesis Reveals Competing Oncogenic and Oncoprotective Roles for Inflammation
Authors: Guo Yucheng , Nie Qing , MacLean Adam L. , Li Yanda , Lei Jinzhi , Li Shao
Published: March 2023

Supporting Tables includes: Table S4: Cancer risks obtained from model simulation with inflammation score from 0 to 15 and duration from 1 to 30 years after inflammation. Table S5: Differentially expression genes from chronic inflammation to cancer. Table S6: Effects of gene mutation to the biological processes included in the model based on literature study. Table S7: High mutation genes associated with differentially expression genes. Table S8: GO term mutation rate of high mutation genes.
Supplementary Table S3 from Germline Lysine-Specific Demethylase 1 (LSD1/KDM1A) Mutations Confer Susceptibility to Multiple Myeloma
Authors: Wei Xiaomu , Calvo-Vidal M. Nieves , Chen Siwei , Wu Gang , Revuelta Maria V. , Sun Jian , Zhang Jinghui , Walsh Michael F. , Nichols Kim E. , Joseph Vijai , Snyder Carrie , Vachon Celine M. , McKay James D. , Wang Shu-Ping , Jayabalan David S. , Jacobs Lauren M. , Becirovic Dina , Waller Rosalie G. , Artomov Mykyta , Viale Agnes , Patel Jayeshkumar , Phillip Jude , Chen-Kiang Selina , Curtin Karen , Salama Mohamed , Atanackovic Djordje , Niesvizky Ruben , Landgren Ola , Slager Susan L. , Godley Lucy A. , Churpek Jane , Garber Judy E. , Anderson Kenneth C. , Daly Mark J. , Roeder Robert G. , Dumontet Charles , Lynch Henry T. , Mullighan Charles G. , Camp Nicola J. , Offit Kenneth , Klein Robert J. , Yu Haiyuan , Cerchietti Leandro , Lipkin Steven M.
Published: March 2023

1. RNAseq DESeq2 differentially expressed gene list for mouse GSK-LSD1 treated and control plasma cells; 2. The compiled list of differentially expressed genes from 1000 permutation analyses; comparing KDM1A mutation carrier MM tumors and randomly picked MM tumors from KDM1A wild-type patients. 3. Genes up- or downregulated in common between GSK-LSD1 mouse plasma cells and MMRF MM tumors from KDM1A mutation carriers; 4. ClueGo pathway analysis.
Supplementary Video S12 from Mitosis-Mediated Intravasation in a Tissue-Engineered Tumor–Microvessel Platform
Authors: Wong Andrew D. , Searson Peter C.
Published: March 2023

Tumor cell unable to perform transendothelial migration sheds portions or blebs into vessel flow.
Supplementary Video S11 from Mitosis-Mediated Intravasation in a Tissue-Engineered Tumor–Microvessel Platform
Authors: Wong Andrew D. , Searson Peter C.
Published: March 2023

Multiple tumor cells detaching into vessel flow following mitosis.
Supplementary Table S2 from Germline Lysine-Specific Demethylase 1 (LSD1/KDM1A) Mutations Confer Susceptibility to Multiple Myeloma
Authors: Wei Xiaomu , Calvo-Vidal M. Nieves , Chen Siwei , Wu Gang , Revuelta Maria V. , Sun Jian , Zhang Jinghui , Walsh Michael F. , Nichols Kim E. , Joseph Vijai , Snyder Carrie , Vachon Celine M. , McKay James D. , Wang Shu-Ping , Jayabalan David S. , Jacobs Lauren M. , Becirovic Dina , Waller Rosalie G. , Artomov Mykyta , Viale Agnes , Patel Jayeshkumar , Phillip Jude , Chen-Kiang Selina , Curtin Karen , Salama Mohamed , Atanackovic Djordje , Niesvizky Ruben , Landgren Ola , Slager Susan L. , Godley Lucy A. , Churpek Jane , Garber Judy E. , Anderson Kenneth C. , Daly Mark J. , Roeder Robert G. , Dumontet Charles , Lynch Henry T. , Mullighan Charles G. , Camp Nicola J. , Offit Kenneth , Klein Robert J. , Yu Haiyuan , Cerchietti Leandro , Lipkin Steven M.
Published: March 2023

Coding region variants that are shared by Family I affected members III:6 and III:7
Supplementary Video S10 from Mitosis-Mediated Intravasation in a Tissue-Engineered Tumor–Microvessel Platform
Authors: Wong Andrew D. , Searson Peter C.
Published: March 2023

Exposed tumor cell detaching into vessel flow following mitosis.
Supplementary Figures, Legends, and Code from Mitosis-Mediated Intravasation in a Tissue-Engineered Tumor–Microvessel Platform
Authors: Wong Andrew D. , Searson Peter C.
Published: March 2023

Legends and still images for Supplemental Videos 1-13. Figure S1 provides a schematic illustration and images of device fabrication and setup. Figure S2 provides still images that summarize all intravasation events. Figure S3 provides still images of additional representative non-intravasation events following tumor cell division at the ECM-vessel interface. Figure S4 summarizes circularity and width measurements for all intravasation and non-intravasation events displayed in Figures S2 and S3. Figure S5 reveals anchored processes left behind after tumor cell intravasation. Figure S6 depicts multi-day tumor cell interactions at the ECM-vessel interface. Figure S7 shows a lack of tumor stem cell markers expressed by MDA-MB-231. Custom ImageJ code provided for quantifying maximum width of traced tumor cells.
Supplementary Data from Germline Lysine-Specific Demethylase 1 (LSD1/KDM1A) Mutations Confer Susceptibility to Multiple Myeloma
Authors: Wei Xiaomu , Calvo-Vidal M. Nieves , Chen Siwei , Wu Gang , Revuelta Maria V. , Sun Jian , Zhang Jinghui , Walsh Michael F. , Nichols Kim E. , Joseph Vijai , Snyder Carrie , Vachon Celine M. , McKay James D. , Wang Shu-Ping , Jayabalan David S. , Jacobs Lauren M. , Becirovic Dina , Waller Rosalie G. , Artomov Mykyta , Viale Agnes , Patel Jayeshkumar , Phillip Jude , Chen-Kiang Selina , Curtin Karen , Salama Mohamed , Atanackovic Djordje , Niesvizky Ruben , Landgren Ola , Slager Susan L. , Godley Lucy A. , Churpek Jane , Garber Judy E. , Anderson Kenneth C. , Daly Mark J. , Roeder Robert G. , Dumontet Charles , Lynch Henry T. , Mullighan Charles G. , Camp Nicola J. , Offit Kenneth , Klein Robert J. , Yu Haiyuan , Cerchietti Leandro , Lipkin Steven M.
Published: March 2023

Additional methods, statistical and resource information to assist readers about how experiments and analyses were conducted.
Supplementary Tables from Mutation Profiling of Key Cancer Genes in Primary Breast Cancers and Their Distant Metastases
Authors: Schrijver Willemijne A.M.E. , Selenica Pier , Lee Ju Youn , Ng Charlotte K.Y. , Burke Kathleen A. , Piscuoglio Salvatore , Berman Samuel H. , Reis-Filho Jorge S. , Weigelt Britta , van Diest Paul J. , Moelans Cathy B.
Published: March 2023

Supplementary Table S1. Clinico-pathologic characteristics of primary breast cancers from our series and the METABRIC study and comparative analyses of the frequencies of somatic mutations found in the 341 genes analyzed. Supplementary Table S2. TP53 Sanger sequencing primers used in this study. Supplementary Table S3. Sequencing statistics Supplementary Table S4. Somatic mutations identified in 17 pairs of primary breast cancers and matched metastases using targeted massively parallel sequencing. Supplementary Table S5. Gene copy number alterations identified in the primary breast cancers and paired metastases. Supplementary Table S6. Pathway analyses of mutations and copy number aberrations that were enriched in metastases vs paired primary tumors per subtype Supplementary Table S7. Potentially targetable genetic alterations identified in primary breast cancers and matched metastases.
Supplementary Figure S1 from Mutation Profiling of Key Cancer Genes in Primary Breast Cancers and Their Distant Metastases
Authors: Schrijver Willemijne A.M.E. , Selenica Pier , Lee Ju Youn , Ng Charlotte K.Y. , Burke Kathleen A. , Piscuoglio Salvatore , Berman Samuel H. , Reis-Filho Jorge S. , Weigelt Britta , van Diest Paul J. , Moelans Cathy B.
Published: March 2023

A. Correlations between concordance percentage of mutations and time between primary tumor and paired metastases B. Influence of different adjuvant treatments on percentage of concordant, primary only or metastasis only mutations.
Figure S1 from Astrocytes Promote Medulloblastoma Progression through Hedgehog Secretion
Authors: Liu Yongqiang , Yuelling Larra W. , Wang Yuan , Du Fang , Gordon Renata E. , O'Brien Jenny A. , Ng Jessica M.Y. , Robins Shannon , Lee Eric H. , Liu Hailong , Curran Tom , Yang Zeng-Jie
Published: March 2023

Astrocytes are present in Shh type MB
Figure S5 from Secretory Autophagy in Cancer-Associated Fibroblasts Promotes Head and Neck Cancer Progression and Offers a Novel Therapeutic Target
Authors: New Jacob , Arnold Levi , Ananth Megha , Alvi Sameer , Thornton Mackenzie , Werner Lauryn , Tawfik Ossama , Dai Hongying , Shnayder Yelizaveta , Kakarala Kiran , Tsue Terance T. , Girod Douglas A. , Ding Wen-Xing , Anant Shrikant , Thomas Sufi Mary
Published: March 2023

Autophagy inhibition reduces HNSCC in combination therapy, and does not affect CAF proliferation
SuppFigures from Immune Toxicities Elicted by CTLA-4 Blockade in Cancer Patients Are Associated with Early Diversification of the T-cell Repertoire
Authors: Oh David Y. , Cham Jason , Zhang Li , Fong Grant , Kwek Serena S. , Klinger Mark , Faham Malek , Fong Lawrence
Published: March 2023

The supplementary file contains 3 supplemental figures. Supplementary Figure S1 shows the kinetics of Ki67 expression by CD4 and CD8 T cells following treatment with ipilimumab. Supplementary Figure S2 shows the change in TCR clonality over time following treatment with ipilimumab. Supplementary Figure S3 shows the changes in clonotype frequencies of sorted CD4+ and CD8+ T cells with ipilimumab.
Figure S3 from Secretory Autophagy in Cancer-Associated Fibroblasts Promotes Head and Neck Cancer Progression and Offers a Novel Therapeutic Target
Authors: New Jacob , Arnold Levi , Ananth Megha , Alvi Sameer , Thornton Mackenzie , Werner Lauryn , Tawfik Ossama , Dai Hongying , Shnayder Yelizaveta , Kakarala Kiran , Tsue Terance T. , Girod Douglas A. , Ding Wen-Xing , Anant Shrikant , Thomas Sufi Mary
Published: March 2023

IL-6 and IL-8 induce fibroblast autophagy
Supplementary Figure S1 from Bone Pain Induced by Multiple Myeloma Is Reduced by Targeting V-ATPase and ASIC3
Authors: Hiasa Masahiro , Okui Tatsuo , Allette Yohance M. , Ripsch Matthew S. , Sun-Wada Ge-Hong , Wakabayashi Hiroki , Roodman G. David , White Fletcher A. , Yoneda Toshiyuki
Published: March 2023

Characterization of 5TGM1 mouse MM cells in vivo and in vitro.
supplementary figure S1 from Differential PI3Kδ Signaling in CD4+ T-cell Subsets Enables Selective Targeting of T Regulatory Cells to Enhance Cancer Immunotherapy
Authors: Ahmad Shamim , Abu-Eid Rasha , Shrimali Rajeev , Webb Mason , Verma Vivek , Doroodchi Atbin , Berrong Zuzana , Samara Raed , Rodriguez Paulo C. , Mkrtichyan Mikayel , Khleif Samir N.
Published: March 2023

Class IA PI3K is equally express in Tregs and Tconvs.
Supplementary Table S2 from Huwe1 Sustains Normal Ovarian Epithelial Cell Transformation and Tumor Growth through the Histone H1.3-H19 Cascade
Authors: Yang Dong , Sun Bin , Zhang Xiaohong , Cheng Daomei , Yu Xiaoping , Yan Lanzhen , Li Lei , An Sanqi , Jiang Hua , Lasorella Anna , Iavarone Antonio , Zhang Shu , Zou Fangdong , Zhao Xudong
Published: March 2023

Supplementary Table S2 List of antibodies used in this study
Supplementary table 1 from Differential PI3Kδ Signaling in CD4+ T-cell Subsets Enables Selective Targeting of T Regulatory Cells to Enhance Cancer Immunotherapy
Authors: Ahmad Shamim , Abu-Eid Rasha , Shrimali Rajeev , Webb Mason , Verma Vivek , Doroodchi Atbin , Berrong Zuzana , Samara Raed , Rodriguez Paulo C. , Mkrtichyan Mikayel , Khleif Samir N.
Published: March 2023

IC50 values for inhibition of Class IA PI3K isoform
Supplementary figure S7 from Differential PI3Kδ Signaling in CD4+ T-cell Subsets Enables Selective Targeting of T Regulatory Cells to Enhance Cancer Immunotherapy
Authors: Ahmad Shamim , Abu-Eid Rasha , Shrimali Rajeev , Webb Mason , Verma Vivek , Doroodchi Atbin , Berrong Zuzana , Samara Raed , Rodriguez Paulo C. , Mkrtichyan Mikayel , Khleif Samir N.
Published: March 2023

Class IA PI3K isoform differentially regulate the Apoptotic pathway of Tregs and Tconvs.