bluuebunny/crossref_metadata_2025 huggingface dataset:
Nanomaterial-Driven Precision Immunomodulation: A New Paradigm in Therapeutic Interventions
Authors: Aljabali Alaa A. A. , Obeid Mohammad A. , Gammoh Omar , El-Tanani Mohamed , Mishra Vijay , Mishra Yachana , Kapre Sumedha , Srivatsa Palakurthi Sushesh , Hassan Sk. Sarif , Nawn Debaleena , Lundstrom Kenneth , Hromić-Jahjefendić Altijana , Serrano-Aroca Ángel , Redwan Elrashdy M. , Uversky Vladimir N. , Tambuwala Murtaza M.
Published: May 2024

Immunotherapy is a rapidly advancing field of research in the treatment of conditions such as cancer and autoimmunity. Nanomaterials can be designed for immune system manipulation, with precise targeted delivery and improved immunomodulatory efficacy. Here, we elaborate on various strategies using nanomaterials, including liposomes, polymers, and inorganic NPs, and discuss their detailed design intricacies, mechanisms, and applications, including the current regulatory issues. This type of nanomaterial design for targeting specific immune cells or tissues and controlling release kinetics could push current technological frontiers and provide new and innovative solutions for immune-related disorders and diseases without off-target effects. These materials enable targeted interactions with immune cells, thereby enhancing the effectiveness of checkpoint inhibitors, cancer vaccines, and adoptive cell therapies. Moreover, they allow for fine-tuning of immune responses while minimizing side effects. At the intersection of nanotechnology and immunology, nanomaterial-based platforms have immense potential to revolutionize patient-centered immunotherapy and reshape disease management. By prioritizing safety, customization, and compliance with regulatory standards, these systems can make significant contributions to precision medicine, thereby significantly impacting the healthcare landscape.
NLRX1 Mediates the Disruption of Intestinal Mucosal Function Caused by Porcine Astrovirus Infection via the Extracellular Regulated Protein Kinases/Myosin Light–Chain Kinase (ERK/MLCK) Pathway
Authors: Tao Jie , Cheng Jinghua , Shi Ying , Li Benqiang , Tang Pan , Jiao Jiajie , Liu Huili
Published: May 2024

Porcine astrovirus (PAstV) has a potential zoonotic risk, with a high proportion of co-infection occurring with porcine epidemic diarrhea virus (PEDV) and other diarrheal pathogens. Despite its high prevalence, the cellular mechanism of PAstV pathogenesis is ill–defined. Previous proteomics analyses have revealed that the differentially expressed protein NOD–like receptor X1 (NLRX1) located in the mitochondria participates in several important antiviral signaling pathways in PAstV–4 infection, which are closely related to mitophagy. In this study, we confirmed that PAstV–4 infection significantly up-regulated NLRX1 and mitophagy in Caco–2 cells, while the silencing of NLRX1 or the treatment of mitophagy inhibitor 3–MA inhibited PAstV–4 replication. Additionally, PAstV–4 infection triggered the activation of the extracellular regulated protein kinases/ myosin light-chain kinase (ERK/MLCK) pathway, followed by the down-regulation of tight–junction proteins (occludin and ZO–1) as well as MUC–2 expression. The silencing of NLRX1 or the treatment of 3–MA inhibited myosin light-chain (MLC) phosphorylation and up-regulated occludin and ZO–1 proteins. Treatment of the ERK inhibitor PD98059 also inhibited MLC phosphorylation, while MLCK inhibitor ML-7 mitigated the down-regulation of mucosa-related protein expression induced by PAstV–4 infection. Yet, adding PD98059 or ML–7 did not affect NLRX1 expression. In summary, this study preliminarily explains that NLRX1 plays an important role in the disruption of intestinal mucosal function triggered by PAstV–4 infection via the ERK/MLC pathway. It will be helpful for further antiviral drug target screening and disease therapy.
An Optimized Protocol for the Generation of Alveolospheres from Wild-Type Mice
Authors: Zabihi Mahsa , Khadim Ali , Schäfer Theresa M. , Alexopoulos Ioannis , Bartkuhn Marek , El Agha Elie , Vazquez-Armendariz Ana I. , Herold Susanne
Published: May 2024

Organoid models have become an integral part of the research methodology in the lung field. These systems allow for the study of progenitor and stem cell self-renewal, self-organization, and differentiation. Distinct models of lung organoids mimicking various anatomical regions of mature lungs have emerged in parallel to the increased gain of knowledge regarding epithelial stem and progenitor cell populations and the corresponding mesenchymal cells that populate the in vivo niche. In the distal lung, type 2 alveolar epithelial cells (AEC2s) represent a stem cell population that is engaged in regenerative mechanisms in response to various insults. These cells self-renew and give rise to AEC1s that carry out gas exchange. Multiple experimental protocols allowing the generation of alveolar organoids, or alveolospheres, from murine lungs have been described. Among the drawbacks have been the requirement of transgenic mice allowing the isolation of AEC2s with high viability and purity, and the occasional emergence of bronchiolar and bronchioalveolar organoids. Here, we provide a refined gating strategy and an optimized protocol for the generation of alveolospheres from wild-type mice. Our approach not only overcomes the need for transgenic mice to generate such organoids, but also yields a pure culture of alveolospheres that is devoid of bronchiolar and bronchioalveolar organoids. Our protocol contributes to the standardization of this important research tool.
Lipid Profile and Triglyceride-Glucose Index (TyG) Alterations in a Single-Center Cohort of Children Diagnosed with Central Precocious Puberty
Authors: Sodero Giorgio , Pane Lucia Celeste , Malavolta Elena , Rotunno Giulia , Sessa Linda , Fraccascia Barbara , Candelli Marcello , Rigante Donato , Cipolla Clelia
Published: May 2024

Background: A correlation between plasma lipids and timing of pubertal development has been hypothesized, though lipid influence remains unclear in central precocious puberty (CPP). Aim: To assess any possible alterations in the lipid profile and triglyceride glucose index (TyG) in children diagnosed with CPP. Patients and Methods: Retrospective single-center study conducted on children (aged 6.3 ± 2.1 years) evaluated for the suspicion of CPP. Results: Based on the results of the gonadotropin releasing hormone (GnRH) test, considering 5 IU/L as cut-off of the luteinizing hormone peak, CPP was confirmed in 43 patients (57.3%). Sixteen (37.2%) had a pathologic body mass index (BMI), with 9 (20.9%) being overweight and 7 (16.27%) obese. High total cholesterol was found in 3 patients with CPP (6.97%), high triglycerides were found in 11 patients with CPP (25.58%), high LDL cholesterol was found in 5 patients with CPP (11.62%), low HDL cholesterol was found in 12/43 patients with CPP (27.9%), a pathologic TyG was found in 13/43 patients with CPP (30.23%). No significant association was observed in the lipid profile for patients with or without CPP, except for HDL cholesterol, which was lower in the CPP group (47.1 ± 10.9; p = 0.033). However, the association between serum HDL cholesterol and CPP was not confirmed at the multivariate logistic regression analysis adjusted for patients’ sex and age (p = 0.1; OR: 1.035; 95% CI: 0.993–1.078). Conclusion: The overall lipid profile of our pediatric patients diagnosed with CPP did not differ from patients having idiopathic precocious thelarche or normal variants of puberty development.
Work of Breathing: Physiology, Measurement, and Diagnostic Value in Childhood Pneumonia
Authors: Amirav Israel , Manucot Aleeza , Crawley Jane , Levi Sapir
Published: May 2024

In clinical practice, increased “work of breathing” (WOB) is used to rapidly identify the acutely ill child in need of immediate clinical care, and is commonly used to support a clinical diagnosis of pneumonia. However, this key clinical sign is poorly understood and inconsistently defined. This review discusses the physiology, measurement, and clinical assessment of WOB, highlighting its utility in the recognition of pneumonia in under-resourced settings, where access to diagnostic imaging may be limited.
Effect of the Different Dietary Supplements on the Average Surface Roughness and Color Stability of Direct Restorative Materials Used in Pediatric Dentistry
Authors: Aktaş Nagehan , Akın Yasemin , Bal Cenkhan , Bani Mehmet , Bankoğlu Güngör Merve
Published: May 2024

Increased surface roughness and discoloration of the direct restorative materials used in pediatric patients affect the longevity of restorations and impair children’s oral health. Many factors can alter these properties. One of these factors is the intake of dietary supplements. It is crucial to predict the properties of restorative materials when exposed to dietary supplements to maintain the dental care of children. Thus, this study aimed to investigate the effect of various syrup-formed dietary supplements on the average surface roughness and color stability of current restorative materials used in pediatric dentistry. Seven different restorative materials (conventional glass ionomer [Fuji IX GP], resin-modified glass ionomer, [Fuji II LC], zirconia-reinforced glass ionomer [Zirconomer Improved], polyacid-modified composite resin [Dyract®XTRA], bulk-fill glass hybrid restorative [Equia Forte HT Fill], conventional resin composite [Charisma Smart], and resin composite with reactive glass fillers [Cention N]) were tested. The specimens prepared from each type of restorative material were divided into five subgroups according to dietary supplements (Sambucol Kids, Resverol, Imunol, Umca, and Microfer). These specimens were immersed daily in supplement solution over a period of 28 days. Surface roughness and color difference measurements were performed at baseline and at the 7th and 28th days. The color difference and Ra values showed that there was an interaction among the type of restorative material, type of dietary supplement, and immersion time factors (p < 0.05). Whereas lower Ra values were found in the composite resin group, the highest Ra values were found in the conventional glass ionomer group. All supplements caused increasing color difference values, and Resverol and Umca showed higher discoloration values above the clinically acceptable threshold. The intake of dietary supplement type, the immersion time of the dietary supplement, and the restorative material type affected the surface roughness and color stability of the tested direct restorative materials. All of the experimental groups showed higher Ra values than clinically acceptable surface roughness values (0.2 µm). The color difference values also increased with the immersion time.
Effectiveness of Learning through Play Plus (LTP Plus) Parenting Intervention on Behaviours of Young Children of Depressed Mothers: A Randomised Controlled Trial
Authors: Husain Nusrat , Sattar Rabia , Kiran Tayyeba , Husain Mina , Shakoor Suleman , Suhag Zamir , Zadeh Zainab , Sikander Siham , Chaudhry Nasim
Published: May 2024

Evidence has shown that parenting intervention programmes improve parental knowledge, attitudes, and practices, which helps in promoting child development. This study aims to examine the effectiveness of parenting intervention in improving child behaviours. This is a secondary analysis of data from a cluster-randomised controlled trial with depressed mothers aged 18–44 years with a child aged 0 to 36 months. This paper reports findings from the dataset of participants with a child aged between 24 and 36 months. Villages (n = 120) were randomised into either of two arms: learning through play plus (LTP Plus) or treatment as usual (TAU). LTP Plus is a 10-session, group parenting intervention integrated with cognitive behaviour therapy, delivered over 3 months. This secondary analysis reports findings on the Eyberg Child Behaviour Inventory (ECBI) and the Home Observation for Measurement of the Environment (HOME). Findings show a significant improvement in child behaviour (ECBI) scores (p < 0.011) and HOME scores (p < 0.001) in the intervention group compared to TAU at 3-month follow-up. In a low-resource setting, low-cost group parenting intervention delivered by community health workers has the potential to improve child behaviours and quality of the home environment. Parenting interventions aimed at improving child behavioural problems can have significant implications for the child, family, and broader societal outcomes. Addressing behavioural problems in early years, parenting interventions can potentially reduce long-term consequences and costs associated with untreated child behavioural issues.
Lady’s Mantle Flower as a Biodegradable Plant-Based Corrosion Inhibitor for CO2 Carbon Steel Corrosion
Authors: Žbulj Katarina , Bilić Gordana , Simon Katarina , Hrnčević Lidia
Published: May 2024

Due to issues with the corrosion problem in the petroleum industry and the use of less ecologically acceptable corrosion inhibitors, great emphasis, within research on corrosion inhibitors, is now being put on green corrosion inhibitors (GCIs). In this study, Lady’s mantle flower extract (LMFE) has been observed as a plant-based GCI for carbon steel in a simulated CO2-saturated brine solution. The effectiveness of the inhibitor in static and flow conditions has been determined using potentiodynamic polarization with Tafel extrapolation and electrochemical impedance spectroscopy (EIS). In static conditions, the inhibitor has been tested at concentrations from 1 g/L to 5 g/L with an increment of 1 g/L per measurement, while, in dynamic (flow) conditions, the inhibitor has been tested at concentrations from 3 g/L to 6 g/L with an increment of 1 g/L per measurement. All measurements were performed at room temperature. EIS and potentiodynamic polarization methods showed that LMFE achieves maximum effectiveness in protecting carbon steel from corrosion when added at a concentration of 4 g/L in static conditions and at a concentration of 5 g/L in flow conditions. The test methods proved that the inhibitory effectiveness of LMFE is greater than 90% in both test conditions (static and flow). The inhibitor efficiency was attributed to the adsorption of LMFE on the carbon steel surface, which was demonstrated by Fourier transform infrared spectroscopy (FTIR) and scanning electron microscopy (SEM). A biodegradability of 0.96 and a toxicity of 19.34% for LMFE were determined. The conducted laboratory tests indicate that LMFE could be used as an effective corrosion inhibitor for CO2 carbon steel corrosion.
Numerical Simulation of the Dynamic Behavior Exhibited by Charged Droplets Colliding with Liquid Film
Authors: Wang Jun , Jia Dongzhou , Yang Min , Zhang Yanbin , Qu Da , Lv Zhenlin
Published: May 2024

Since droplet collision with walls has become a research hotspot, scholars have conducted a large number of studies on the dynamic behavior of electrically neutral droplets colliding with dry walls. However, with the rapid development of electrostatic spray technology, there is an increasingly urgent need to study the dynamic process of collision between charged droplets and walls. In this paper, considering the actual working conditions of electrostatic spray, an electric field model is introduced based on the two-phase flow field. Through the coupling of a multiphase flow field and electric field and a multiphysics field, the dynamic numerical calculation method is used to explore the collision electrodynamic behavior of charged droplets and liquid film. The dynamic evolution process of the formation and development of the liquid crown in the collision zone was clarified, and the critical velocity and critical Weber number of the rebound, spreading, and splashing of charged droplets were tracked. The distribution characteristics of electrostatic field, pressure field, and velocity field under different working conditions are analyzed, and the dynamic mechanism of the charged droplet collision liquid film under multi-physics coupling is revealed based on the electro-viscous effect. It is confirmed that the external electric field can increase the critical velocity of droplet splashing and fragmentation and promote the spreading and fusion behavior of droplets and liquid films. The influence of the impact angle of charged droplets on the collision behavior was further explored. It was found that the charged droplets not only have a smaller critical angle for fragmentation and splashing, but also have a faster settling and fusion speed.
Thermal Characterization of [C2Im][NO3] and Multivalent Nitrate Salts Mixtures
Authors: Vallet Pablo , Parajó Juan José , Santiago-Alonso Antía , Villanueva María , Varela Luis Miguel , Salgado Josefa
Published: May 2024

Due to their intrinsic properties, the current applicability of ionic liquids is enormous. In particular, their use in electrochemistry is beyond question. Numerous studies on these compounds and their mixtures, especially with lithium salts, focus on their use as electrolytes for batteries and other energy storage devices. This includes thermal energy storage devices, where 4th generation ionic liquids and their derivatives show a huge potential. Nevertheless, considering the uneven availability of the raw materials, such as lithium, research has extended to mixtures of these compounds with other salts of different metals that are more abundant and widely distributed, such as magnesium or aluminum. This work presents a comprehensive thermal characterization, using differential scanning calorimetry and thermogravimetry, of the protic ionic liquid ethylimidazolium nitrate and its mixture with magnesium and aluminum nitrate salts at different concentrations. Additionally, a comparison between these results and previous studies of mixtures of this ionic liquid with lithium nitrate, as well as mixtures of the protic ionic liquid EAN with the same metal salts, was also performed. The results indicated that the salt addition tends to broaden and reduce crystallization and melting peaks, while the glass transition becomes more visible and shifts to higher temperatures with increasing salt concentration. This is due to the disorder generated by the rearrangement of ions in the polar domains, which erodes the hydrogen bond network of the protic ionic liquid. Nevertheless, the thermal stability of the blended samples does not change significantly compared to the bulk ionic liquid.
Traditional Hands-On Puzzle Method versus Fully Digital Approach in Teaching Tooth Morphology: A Comparative Study of Educational Outcomes
Authors: Sehic Amer , Khan Qalbi
Published: May 2024

Objective: Tooth morphology education is a critical component of dental curricula, providing a foundational understanding of the intricate structural anatomy of teeth. This study evaluates the learning outcomes in relation to tooth morphology of two student cohorts from different academic terms, comparing the traditional ‘tooth puzzle’ method to an alternative fully digital approach. Materials and Methods: Two groups of Master of Dentistry students were retrospectively analyzed. The control group (55 students) was taught via the ‘tooth puzzle’ method in 2021, while the experimental group (55 students) underwent a fully digital course in 2020 due to COVID-19 restrictions. Both groups completed a digital examination involving the identification of 40 teeth, presented as images and videos. Results: In the control group of 55 students, nearly half (49.1%) achieved faultless results, while 65.5% had at most two faults, and 74.5% had no more than four faults. The group had a total of 163 faults, averaging 3.0 per student, with only one student (1.8%) failing the test. In stark contrast, the experimental group had no students without faults, 9.1% had four or fewer faults, and a significant 61.8% made 10 or more faults, with 29.1% failing their first test attempt by exceeding 12 faults. Overall, the experimental group registered 582 faults, averaging 10.6 per student. Conclusions: The ‘tooth puzzle’ method, with its interactive and tactile elements, proved more effective in teaching tooth morphology than the digital-only approach. The increased number of faults and failed tests in the experimental group suggest that while digital tools offer meaningful support in learning tooth morphology, their main advantage is seen when coupled with traditional hands-on techniques, not unassisted and independently.
Reappraising Natures and Perspectives of Wasteland in the Developing World with a Focus on India
Authors: Kar Surajit , Sundberg Trude , Satpati Lakshminarayan , Mukherjee Subham
Published: May 2024

This article seeks to provide an improved and more comprehensive understanding of the concept and theories on wasteland. It achieves this by focusing on the Indian context, allowing us to unpack the importance of including multiple perspectives of wasteland narratives; this means including more positive narratives of the potential of wasteland to inform and improve prospects for land policies in the Global South. Wasteland is commonly recognized as an underutilized category of land that may transform into a valuable resource base with proper management measures. The term waste has multiple angles that carry different notions ranging from fallow to agroforestry land in the Global South and brownfield to green space in the Global North. We conduct a narrative review approach to qualitatively analyze the concept of wastelands, which has been studied in the pre-existing literature from 1970 to the present. This unsystematic literature review approach incorporates multiple elements of wasteland discourse, like understanding the meaning of the term on a global scale, setting out the meaning of the term waste into multiple perspectives explicitly in the Indian context, along with different classes and management approaches to wasteland from a national perspective. The multiple perspectives of wasteland not only generate misconceptions of land resources but spawn difficulties in land-use policy, particularly for the Indian scenario. For sustainable land-use policy, reclaiming wasteland would be the best possible way for India and other countries in the Global South, which requires a comprehensive methodological overview on wasteland narrative.
A Review of Forest Ecosystem Services and Their Spatial Value Characteristics
Authors: Nolander Carl , Lundmark Robert
Published: May 2024

Forests provide a variety of resources and benefits, but only a few, such as timber, are traded on the markets. Ecosystem service valuation is a method for quantifying the non-market benefits of forests to understand the full costs of forest management. This review examines the forest ecosystem service valuations over the past 20 years, with a particular focus on their spatial modeling. The literature review method is designed to provide a systematic, explicit, and reproducible outcome concerning the valuations of forest ecosystem services and the contextual setting of these valuations. The findings suggest that there is a huge variation in the values reported for similar ecosystem services but that carbon sequestration, recreation in forests, and hydrological services, such as watershed protection and flood prevention, are the ecosystem services that are consistently valued highly in the reviewed studies. In the last ten years, studies have more frequently modeled ecosystem services in spatial terms.
Climate–Growth Relationships of Mongolian Pine (Pinussylvestris var. mongholica) along an Altitudinal Gradient of Northeast China
Authors: Wang Xinrui , Wang Zhaopeng , Zhang Dongyou , Luo Taoran , Li Xiangyou , Du Bingyun , Zhong Shubing
Published: May 2024

To study the radial growth of Mongolian pine (Pinus sylvestris var. mongholica, MP) trees in response to climatic factors against the global warming background in the northeast part of the Greater Khingan Mountains (GKM), 101 tree cores were collected at contrasting altitudes (1100 and 650 m) in the Mordoga area, a tree-ring width chronology of MP was established for that region at both altitudes, and the relation between climatic factors and ring width trends at different time scales was investigated. The results revealed four major findings. (1) The ring width chronology of MP in the low-altitude area has better quality. (2) The growth of MP at high (low) altitude was mainly influenced by temperature (precipitation) factors. (3) Before a sudden change in temperature, there was a decreasing trend in the annual indices of MPs at higher altitudes. The chronological coefficients of MPs at both altitudes showed a significant upward trend after the increase in temperature. (4) The sliding analysis results showed that the stability of the relationship between MP growth and its response to climatic factors at both altitudes was also mostly similar. MP growth is relatively stable and sensitive and to climatic factors as temperatures increase.
Framework to Create Inventory Dataset for Disaster Behavior Analysis Using Google Earth Engine: A Case Study in Peninsular Malaysia for Historical Forest Fire Behavior Analysis
Authors: Chew Yee Jian , Ooi Shih Yin , Pang Ying Han , Lim Zheng You
Published: May 2024

This study developed a comprehensive framework using Google Earth Engine to efficiently generate a forest fire inventory dataset, which enhanced data accessibility without specialized knowledge or access to private datasets. The framework is applicable globally, and the datasets generated are freely accessible and shareable. By implementing the framework in Peninsular Malaysia, significant forest fire factors were successfully extracted, including the Keetch–Byram Drought Index (KBDI), soil moisture, temperature, windspeed, land surface temperature (LST), Palmer Drought Severity Index (PDSI), Normalized Vegetation Index (NDVI), landcover, and precipitation, among others. Additionally, this study also adopted large language models, specifically GPT-4 with the Noteable plugin, for preliminary data analysis to assess the dataset’s validity. Although the plugin effectively performed basic statistical analyses and visualizations, it demonstrated limitations, such as selectively dropping or choosing only relevant columns for tests and automatically modifying scales. These behaviors underscore the need for users to perform additional checks on the codes generated to ensure that they accurately reflect the intended analyses. The initial findings indicate that factors such as KBDI, LST, climate water deficit, and precipitation significantly impact forest fire occurrences in Peninsular Malaysia. Future research should explore extending the framework’s application to various regions and further refine it to accommodate a broader range of factors. Embracing and rigorously validating large language model technologies, alongside developing new tools and plugins, are essential for advancing the field of data analysis.
Diets, Condition, and Reproductive Fitness of Slimy Sculpin (Uranidea cognata) after Catastrophic Flooding in Trout Streams in Southeastern Minnesota, USA
Authors: Mundahl Neal D.
Published: May 2024

Slimy sculpin (Uranidea cognata) inhabit coldwater streams in southeastern Minnesota, USA, many of which were subjected to probable 2000-year flood events in August 2007. Floods scoured streambeds, created new stream channels, and greatly reduced benthic invertebrate communities that serve as the primary food resource for sculpin. Diets and Fulton condition of sculpin in Gilmore Creek (with moderate flooding) and Garvin Brook (with very severe flooding) had been examined just prior to flooding and were re-examined 2 weeks after flooding to assess possible diet and condition changes. Diets, body condition, and reproductive fitness of sculpin were examined 7 months post-flood in these same two streams, plus nearby Trout Run (which also experienced very severe flooding). Sculpin condition declined slightly post-flood in Garvin Brook but improved in Gilmore Creek. Prior to spring spawning, the condition of Garvin Brook sculpin had improved, but Gilmore Creek fish condition had worsened. Sculpin diets were more diverse before and after flooding in Gilmore Creek than in Garvin Brook, although the diets of fish from both streams were dominated (>55%) by midge (Diptera: Chironomidae) larvae. Diets remained largely unchanged before versus after flooding in the more severely flooded Garvin Brook, but they changed in Gilmore Creek, becoming more midge-dominated. Prey number per sculpin stomach declined post-flood in Gilmore Creek but not in Garvin Brook, although the dry mass of prey/fish wet mass declined post-flood in both streams. Pre-spawn sculpin displayed no patterns in reproductive fitness (gonadosomatic index, hepatosomatic index, oocyte number) among the three streams that may have been related to flooding severity the previous summer. Sculpin diets and condition were not altered as expected by flooding, and food resource recovery apparently was rapid enough to prevent longer-term impacts on sculpin condition and reproductive fitness in the streams examined.
Characterizations on a GRAS Electrospun Lipid–Polymer Composite Loaded with Tetrahydrocurcumin
Authors: Lin Zhenyu , Li Jun , Huang Qingrong
Published: May 2024

Electrospun/sprayed fiber films and nanoparticles were broadly studied as encapsulation techniques for bioactive compounds. Nevertheless, many of them involved using non-volatile toxic solvents or non-biodegradable polymers that were not suitable for oral consumption, thus rather limiting their application. In this research, a novel electrospun lipid–polymer composite (ELPC) was fabricated with whole generally recognized as safe (GRAS) materials including gelatin, medium chain triglyceride (MCT) and lecithin. A water-insoluble bioactive compound, tetrahydrocurcumin (TC), was encapsulated in the ELPC to enhance its delivery. Confocal laser scanning microscopy (CLSM) was utilized to examine the morphology of this ELPC and found that it was in a status between electrospun fibers and electrosprayed particles. It was able to form self-assembled emulsions (droplets visualized by CLSM) to deliver active compounds. In addition, this gelatin-based ELPC self-assembled emulsion was able to form a special emulsion gel. CLSM observation of this gel displayed that the lipophilic contents of the ELPC were encapsulated within the cluster of the hydrophilic gelatin gel network. The FTIR spectrum of the TC-loaded ELPC did not show the fingerprint pattern of crystalline TC, while it displayed the aliphatic hydrocarbon stretches from MCT and lecithin. The dissolution experiment demonstrated a relatively linear release profile of TC from the ELPC. The lipid digestion assay displayed a rapid digestion of triglycerides in the first 3–6 min, with a high extent of lipolysis. A Caco-2 intestinal monolayer transport study was performed. The ELPC delivered more TC in the upward direction than downwards. MTT study results did not report cytotoxicity for both pure TC and the ELPC-encapsulated TC under 15 μg/mL. Caco-2 cellular uptake was visualized by CLSM and semi-quantified to estimate the accumulation rate of TC in the cells over time.
PVA Hydrogels Supplemented with PLA Mesh for Tissue Regeneration Scaffold
Authors: Seo Young-Ho , Lee Jae-Man , Park Sun-Young , Kim Myung-Hoo , Kim Seon-Beom , Oh Tae-Hwan
Published: May 2024

This study examined the tensile strength and biocompatibility properties of polyvinyl alcohol (PVA) hydrogel tissue regeneration scaffolds with polylactic acid (PLA) mesh fabric added as reinforcement, with a focus on the impact of heat treatment temperature and the number of layers of the PLA mesh fabric. The hydrogel scaffolds were prepared using a freeze–thaw method to create PVA hydrogel, with the PLA mesh fabric placed inside the hydrogel. The swelling ratio of the PVA/PLA hydrogel scaffolds decreased with increasing layer number and heat treatment temperature of the PLA mesh. The gel strength was highest when five layers of PLA mesh fabric were added, heat-treated at 120 °C, and confirmed to be properly placed inside the hydrogel by SEM images. The MTT assay and DAPI staining using HaCaT cells demonstrated that the cell proliferation was uninterrupted throughout the experimental period, confirming the biocompatibility of the scaffold. Therefore, we confirmed the possibility of using PLA mesh fabric as a reinforcement for PVA hydrogel to improve the strength of scaffolds for tissue regeneration, and we confirmed the potential of PLA mesh fabric as a reinforcement for various biomaterials.
Exploring Applications and Preparation Techniques for Cellulose Hydrogels: A Comprehensive Review
Authors: Tang Yanjin , Fang Zhenxing , Lee Hoo-Jeong
Published: May 2024

Cellulose hydrogels, formed either through physical or chemical cross-linking into a three-dimensional network from cellulose or its derivatives, are renowned for their exceptional water absorption capacities and biocompatibility. Rising demands for sustainable materials have spurred interest in cellulose hydrogels, attributed to their abundant supply, biodegradability, and non-toxic nature. These properties highlight their extensive potential across various sectors including biomedicine, the food industry, and environmental protection. Cellulose hydrogels are particularly advantageous in applications such as drug delivery, wound dressing, and water treatment. Recent large-scale studies have advanced our understanding of cellulose preparation and its applications. This review delves into the fundamental concepts, preparation techniques, and current applications of cellulose hydrogels in diverse fields. It also discusses the latest advances in nano-lignin-based hydrogels, providing a comprehensive overview of this promising material and offering insights and guidance for future research and development.
A Comprehensive Review of Fragile X Syndrome and Fragile X Premutation Associated Conditions in Africa
Authors: Mbachu Chioma N. P. , Mbachu Ikechukwu Innocent , Hagerman Randi
Published: May 2024

Fragile X syndrome (FXS) is a genetic disorder caused by a mutation in the fragile X messenger ribonucleoprotein 1 (FMR1) gene and known to be a leading cause of inherited intellectual disability globally. It results in a range of intellectual, developmental, and behavioral problems. Fragile X premutation-associated conditions (FXPAC), caused by a smaller CGG expansion (55 to 200 CGG repeats) in the FMR1 gene, are linked to other conditions that increase morbidity and mortality for affected persons. Limited research has been conducted on the burden, characteristics, diagnosis, and management of these conditions in Africa. This comprehensive review provides an overview of the current literature on FXS and FXPAC in Africa. The issues addressed include epidemiology, clinical features, discrimination against affected persons, limited awareness and research, and poor access to resources, including genetic services and treatment programs. This paper provides an in-depth analysis of the existing worldwide data for the diagnosis and treatment of fragile X disorders. This review will improve the understanding of FXS and FXPAC in Africa by incorporating existing knowledge, identifying research gaps, and potential topics for future research to enhance the well-being of individuals and families affected by FXS and FXPAC.
A Case of Non-Syndromic Congenital Cataracts Caused by a Novel MAF Variant in the C-Terminal DNA-Binding Domain—Case Report and Literature Review
Authors: Zhao Sharon H. , Yap Kai Lee , Allegretti Valerie , Drackley Andy , Ing Alexander , Gordon Adam , Skol Andrew , McMullen Patrick , Bohnsack Brenda L. , Kurup Sudhi P. , Ralay Ranaivo Hantamalala , Rossen Jennifer L.
Published: May 2024

The MAF gene encodes a transcription factor in which pathogenic variants have been associated with both isolated and syndromic congenital cataracts. We aim to review the MAF variants in the C-terminal DNA-binding domain associated with non-syndromic congenital cataracts and describe a patient with a novel, disease-causing de novo missense variant. Published reports of C-terminal MAF variants and their associated congenital cataracts and ophthalmic findings were reviewed. The patient we present and his biological parents had genetic testing via a targeted gene panel followed by trio-based whole exome sequencing. A 4-year-old patient with a history of bilateral nuclear and cortical cataracts was found to have a novel, likely pathogenic de novo variant in MAF, NM_005360.5:c.922A>G (p.Lys308Glu). No syndromic findings or anterior segment abnormalities were identified. We report the novel missense variant, c.922A>G (p.Lys308Glu), in the C-terminal DNA-binding domain of MAF classified as likely pathogenic and associated with non-syndromic bilateral congenital cataracts.
Gene Abnormalities and Modulated Gene Expression Associated with Radionuclide Treatment: Towards Predictive Biomarkers of Response
Authors: Smith Tim A. D.
Published: May 2024

Molecular radiotherapy (MRT), also known as radioimmunotherapy or targeted radiotherapy, is the delivery of radionuclides to tumours by targeting receptors overexpressed on the cancer cell. Currently it is used in the treatment of a few cancer types including lymphoma, neuroendocrine, and prostate cancer. Recently reported outcomes demonstrating improvements in patient survival have led to an upsurge in interest in MRT particularly for the treatment of prostate cancer. Unfortunately, between 30% and 40% of patients do not respond. Further normal tissue exposure, especially kidney and salivary gland due to receptor expression, result in toxicity, including dry mouth. Predictive biomarkers to select patients who will benefit from MRT are crucial. Whilst pre-treatment imaging with imaging versions of the therapeutic agents is useful in demonstrating tumour binding and potentially organ toxicity, they do not necessarily predict patient benefit, which is dependent on tumour radiosensitivity. Transcript-based biomarkers have proven useful in tailoring external beam radiotherapy and adjuvant treatment. However, few studies have attempted to derive signatures for MRT response prediction. Here, transcriptomic studies that have identified genes associated with clinical radionuclide exposure have been reviewed. These studies will provide potential features for seeding multi-component biomarkers of MRT response.
Integrating Bioinformatics and Machine Learning for Genomic Prediction in Chickens
Authors: Li Xiaochang , Chen Xiaoman , Wang Qiulian , Yang Ning , Sun Congjiao
Published: May 2024

Genomic prediction plays an increasingly important role in modern animal breeding, with predictive accuracy being a crucial aspect. The classical linear mixed model is gradually unable to accommodate the growing number of target traits and the increasingly intricate genetic regulatory patterns. Hence, novel approaches are necessary for future genomic prediction. In this study, we used an illumina 50K SNP chip to genotype 4190 egg-type female Rhode Island Red chickens. Machine learning (ML) and classical bioinformatics methods were integrated to fit genotypes with 10 economic traits in chickens. We evaluated the effectiveness of ML methods using Pearson correlation coefficients and the RMSE between predicted and actual phenotypic values and compared them with rrBLUP and BayesA. Our results indicated that ML algorithms exhibit significantly superior performance to rrBLUP and BayesA in predicting body weight and eggshell strength traits. Conversely, rrBLUP and BayesA demonstrated 2–58% higher predictive accuracy in predicting egg numbers. Additionally, the incorporation of suggestively significant SNPs obtained through the GWAS into the ML models resulted in an increase in the predictive accuracy of 0.1–27% across nearly all traits. These findings suggest the potential of combining classical bioinformatics methods with ML techniques to improve genomic prediction in the future.
Knockout Mouse Studies Show That Mitochondrial CLPP Peptidase and CLPX Unfoldase Act in Matrix Condensates near IMM, as Fast Stress Response in Protein Assemblies for Transcript Processing, Translation, and Heme Production
Authors: Key Jana , Gispert Suzana , Auburger Georg
Published: May 2024

LONP1 is the principal AAA+ unfoldase and bulk protease in the mitochondrial matrix, so its deletion causes embryonic lethality. The AAA+ unfoldase CLPX and the peptidase CLPP also act in the matrix, especially during stress periods, but their substrates are poorly defined. Mammalian CLPP deletion triggers infertility, deafness, growth retardation, and cGAS-STING-activated cytosolic innate immunity. CLPX mutations impair heme biosynthesis and heavy metal homeostasis. CLPP and CLPX are conserved from bacteria to humans, despite their secondary role in proteolysis. Based on recent proteomic–metabolomic evidence from knockout mice and patient cells, we propose that CLPP acts on phase-separated ribonucleoprotein granules and CLPX on multi-enzyme condensates as first-aid systems near the inner mitochondrial membrane. Trimming within assemblies, CLPP rescues stalled processes in mitoribosomes, mitochondrial RNA granules and nucleoids, and the D-foci-mediated degradation of toxic double-stranded mtRNA/mtDNA. Unfolding multi-enzyme condensates, CLPX maximizes PLP-dependent delta-transamination and rescues malformed nascent peptides. Overall, their actions occur in granules with multivalent or hydrophobic interactions, separated from the aqueous phase. Thus, the role of CLPXP in the matrix is compartment-selective, as other mitochondrial peptidases: MPPs at precursor import pores, m-AAA and i-AAA at either IMM face, PARL within the IMM, and OMA1/HTRA2 in the intermembrane space.
Genome-Wide Identification of OsZIPs in Rice and Gene Expression Analysis under Manganese and Selenium Stress
Authors: Zeng Xiang , Yang Shaoxia , Li Feng , Yao Yushuang , Wu Zhengwei , Xue Yingbin , Liu Ying
Published: May 2024

Zinc (Zn)- and iron (Fe)-regulating transport-like proteins (ZIPs) are a class of proteins crucial for metal uptake and transport in plants, particularly for Zn and Fe absorption and distribution. These proteins ensure the balance of trace elements essential for plant growth, development, and metabolic activities. However, the role of the rice (Oryza sativa) OsZIP gene family in manganese (Mn) and selenium (Se) transport remains underexplored. This research conducted an all-sided analysis of the rice OsZIPs and identified 16 OsZIP sequences. Phylogenetic analysis categorized the OsZIPs predominantly within the three subfamilies. The expression levels of OsZIPs in rice root and leaf subjected to Mn and Se toxicity stress were examined through quantitative real-time PCR (qRT–PCR). The findings revealed significant differential expression of many OsZIPs under these conditions, indicating a potential regulating effect in the response of rice to Mn and Se toxicity. This work lays a foundation for further functional studies of OsZIPs, enhancing our understanding of the response mechanisms of rice to Mn and Se toxicity and their roles in growth, development, and environmental adaptation.
Identification of Barley yellow mosaic virus Isolates Breaking rym3 Resistance in Japan
Authors: Zhu Hongjing , Okiyama Takeshi , Mishina Kohei , Kikuchi Shinji , Sassa Hidenori , Komatsuda Takao , Kato Tsuneo , Oono Youko
Published: May 2024

In early spring 2018, significant mosaic disease symptoms were observed for the first time on barley leaves (Hordeum vulgare L., cv. New Sachiho Golden) in Takanezawa, Tochigi Prefecture, Japan. This cultivar carries the resistance gene rym3 (rym; resistance to yellow mosaic). Through RNA-seq analysis, Barley yellow mosaic virus (BaYMV-Takanezawa) was identified in the roots of all five plants (T01–T05) in the field. Phylogenetic analysis of RNA1, encompassing known BaYMV pathotypes I through V, revealed that it shares the same origin as isolate pathotype IV (BaYMV-Ohtawara pathotype). However, RNA2 analysis of isolates revealed the simultaneous presence of two distinct BaYMV isolates, BaYMV-Takanezawa-T01 (DRR552862, closely related to pathotype IV) and BaYMV-Takanezawa-T02 (DRR552863, closely related to pathotype III). The amino acid sequences of the BaYMV-Takanezawa isolates displayed variations, particularly in the VPg and N-terminal region of CP, containing mutations not found in other domains of the virus genome. Changes in the CI (RNA1 amino acid residue 459) and CP (RNA1 amino acid residue 2138) proteins correlated with pathogenicity. These findings underscore the importance of monitoring and understanding the genetic diversity of BaYMV for effective disease management strategies in crop breeding.
Assessing myBaits Target Capture Sequencing Methodology Using Short-Read Sequencing for Variant Detection in Oat Genomics and Breeding
Authors: Mahmood Khalid , Sarup Pernille , Oertelt Lukas , Jahoor Ahmed , Orabi Jihad
Published: May 2024

The integration of target capture systems with next-generation sequencing has emerged as an efficient tool for exploring specific genetic regions with a high resolution and facilitating the rapid discovery of novel alleles. Despite these advancements, the application of targeted sequencing methodologies, such as the myBaits technology, in polyploid oat species remains relatively unexplored. In this study, we utilized the myBaits target capture method offered by Daicel Arbor Biosciences to detect variants and assess their reliability for variant detection in oat genomics and breeding. Ten oat genotypes were carefully chosen for targeted sequencing, focusing on specific regions on chromosome 2A to detect variants. The selected region harbors 98 genes. Precisely designed baits targeting the genes within these regions were employed for the target capture sequencing. We employed various mappers and variant callers to identify variants. After the identification of variants, we focused on the variants identified via all variants callers to assess the applicability of the myBaits sequencing methodology in oat breeding. In our efforts to validate the identified variants, we focused on two SNPs, one deletion and one insertion identified via all variant callers in the genotypes KF-318 and NOS 819111-70 but absent in the remaining eight genotypes. The Sanger sequencing of targeted SNPs failed to reproduce target capture data obtained through the myBaits technology. Similarly, the validation of deletion and insertion variants via high-resolution melting (HRM) curve analysis also failed to reproduce target capture data, again suggesting limitations in the reliability of the myBaits target capture sequencing using short-read sequencing for variant detection in the oat genome. This study shed light on the importance of exercising caution when employing the myBaits target capture strategy for variant detection in oats. This study provides valuable insights for breeders seeking to advance oat breeding efforts and marker development using myBaits target capture sequencing, emphasizing the significance of methodological sequencing considerations in oat genomics research.