bluuebunny/crossref_metadata_2025 huggingface dataset:
Table S3 from Cell of Origin Influences Pancreatic Cancer Subtype
Authors: Flowers Brittany M. , Xu Hang , Mulligan Abigail S. , Hanson Kathryn J. , Seoane Jose A. , Vogel Hannes , Curtis Christina , Wood Laura D. , Attardi Laura D.
Published: April 2023

Phenotypes in ductal cell-of-origin mouse cohorts
Supplementary Fig 4 from HER2-Mediated Internalization of Cytotoxic Agents in ERBB2 Amplified or Mutant Lung Cancers
Authors: Li Bob T. , Michelini Flavia , Misale Sandra , Cocco Emiliano , Baldino Laura , Cai Yanyan , Shifman Sophie , Tu Hai-Yan , Myers Mackenzie L. , Xu Chongrui , Mattar Marissa , Khodos Inna , Little Megan , Qeriqi Besnik , Weitsman Gregory , Wilhem Clare J. , Lalani Alshad S. , Diala Irmina , Freedman Rachel A. , Lin Nancy U. , Solit David B. , Berger Michael F. , Barber Paul R. , Ng Tony , Offin Michael , Isbell James M. , Jones David R. , Yu Helena A. , Thyparambil Sheeno , Liao Wei-Li , Bhalkikar Anuja , Cecchi Fabiola , Hyman David M. , Lewis Jason S. , Buonocore Darren J. , Ho Alan L. , Makker Vicky , Reis-Filho Jorge S. , Razavi Pedram , Arcila Maria E. , Kris Mark G. , Poirier John T. , Shen Ronglai , Tsurutani Junji , Ulaner Gary A. , de Stanchina Elisa , Rosen Neal , Rudin Charles M. , Scaltriti Maurizio
Published: April 2023

Supplementary Fig 4
Supplementary Fig 3 from HER2-Mediated Internalization of Cytotoxic Agents in ERBB2 Amplified or Mutant Lung Cancers
Authors: Li Bob T. , Michelini Flavia , Misale Sandra , Cocco Emiliano , Baldino Laura , Cai Yanyan , Shifman Sophie , Tu Hai-Yan , Myers Mackenzie L. , Xu Chongrui , Mattar Marissa , Khodos Inna , Little Megan , Qeriqi Besnik , Weitsman Gregory , Wilhem Clare J. , Lalani Alshad S. , Diala Irmina , Freedman Rachel A. , Lin Nancy U. , Solit David B. , Berger Michael F. , Barber Paul R. , Ng Tony , Offin Michael , Isbell James M. , Jones David R. , Yu Helena A. , Thyparambil Sheeno , Liao Wei-Li , Bhalkikar Anuja , Cecchi Fabiola , Hyman David M. , Lewis Jason S. , Buonocore Darren J. , Ho Alan L. , Makker Vicky , Reis-Filho Jorge S. , Razavi Pedram , Arcila Maria E. , Kris Mark G. , Poirier John T. , Shen Ronglai , Tsurutani Junji , Ulaner Gary A. , de Stanchina Elisa , Rosen Neal , Rudin Charles M. , Scaltriti Maurizio
Published: April 2023

Supplementary Fig 3
Supplementary Fig 2 from HER2-Mediated Internalization of Cytotoxic Agents in ERBB2 Amplified or Mutant Lung Cancers
Authors: Li Bob T. , Michelini Flavia , Misale Sandra , Cocco Emiliano , Baldino Laura , Cai Yanyan , Shifman Sophie , Tu Hai-Yan , Myers Mackenzie L. , Xu Chongrui , Mattar Marissa , Khodos Inna , Little Megan , Qeriqi Besnik , Weitsman Gregory , Wilhem Clare J. , Lalani Alshad S. , Diala Irmina , Freedman Rachel A. , Lin Nancy U. , Solit David B. , Berger Michael F. , Barber Paul R. , Ng Tony , Offin Michael , Isbell James M. , Jones David R. , Yu Helena A. , Thyparambil Sheeno , Liao Wei-Li , Bhalkikar Anuja , Cecchi Fabiola , Hyman David M. , Lewis Jason S. , Buonocore Darren J. , Ho Alan L. , Makker Vicky , Reis-Filho Jorge S. , Razavi Pedram , Arcila Maria E. , Kris Mark G. , Poirier John T. , Shen Ronglai , Tsurutani Junji , Ulaner Gary A. , de Stanchina Elisa , Rosen Neal , Rudin Charles M. , Scaltriti Maurizio
Published: April 2023

Supplementary Fig 2
Figure S3 from Cell of Origin Influences Pancreatic Cancer Subtype
Authors: Flowers Brittany M. , Xu Hang , Mulligan Abigail S. , Hanson Kathryn J. , Seoane Jose A. , Vogel Hannes , Curtis Christina , Wood Laura D. , Attardi Laura D.
Published: April 2023

Analysis of pancreatic cancer development from adult mouse ductal cells
Figure S2 from Cell of Origin Influences Pancreatic Cancer Subtype
Authors: Flowers Brittany M. , Xu Hang , Mulligan Abigail S. , Hanson Kathryn J. , Seoane Jose A. , Vogel Hannes , Curtis Christina , Wood Laura D. , Attardi Laura D.
Published: April 2023

Analysis of p53 missense mutants in acinar cell-derived pancreatic cancer development
Figure S1 from Cell of Origin Influences Pancreatic Cancer Subtype
Authors: Flowers Brittany M. , Xu Hang , Mulligan Abigail S. , Hanson Kathryn J. , Seoane Jose A. , Vogel Hannes , Curtis Christina , Wood Laura D. , Attardi Laura D.
Published: April 2023

Analysis of pancreatic cancer development from adult mouse acinar cells
Supplementary Methods from Epigenetic Suppression of Transgenic T-cell Receptor Expression via Gamma-Retroviral Vector Methylation in Adoptive Cell Transfer Therapy
Authors: Nowicki Theodore S. , Farrell Colin , Morselli Marco , Rubbi Liudmilla , Campbell Katie M. , Macabali Mignonette H. , Berent-Maoz Beata , Comin-Anduix Begoña , Pellegrini Matteo , Ribas Antoni
Published: April 2023

Supplementary Methods
Supplementary Figure S6 from Circadian Regulator CLOCK Recruits Immune-Suppressive Microglia into the GBM Tumor Microenvironment
Authors: Chen Peiwen , Hsu Wen-Hao , Chang Andrew , Tan Zhi , Lan Zhengdao , Zhou Ashley , Spring Denise J. , Lang Frederick F. , Wang Y. Alan , DePinho Ronald A.
Published: April 2023

Figure S6 shows that CLOCK depletion inhibits GSC stemness and microglia infiltration, but promotes apoptosis in tumors.
Supplementary Movie 1 (SM1) from Changes in Aged Fibroblast Lipid Metabolism Induce Age-Dependent Melanoma Cell Resistance to Targeted Therapy via the Fatty Acid Transporter FATP2
Authors: Alicea Gretchen M. , Rebecca Vito W. , Goldman Aaron R. , Fane Mitchell E. , Douglass Stephen M. , Behera Reeti , Webster Marie R. , Kugel Curtis H. , Ecker Brett L. , Caino M. Cecilia , Kossenkov Andrew V. , Tang Hsin-Yao , Frederick Dennie T. , Flaherty Keith T. , Xu Xiaowei , Liu Qin , Gabrilovich Dmitry I. , Herlyn Meenhard , Blair Ian A. , Schug Zachary T. , Speicher David W. , Weeraratna Ashani T.
Published: April 2023

Young BODIPY-C12 fibroblasts with GFP-Tagged melanoma cells showing lipid uptake
Appendix.pdf from Personalized Antibodies for Gastroesophageal Adenocarcinoma (PANGEA): A Phase II Study Evaluating an Individualized Treatment Strategy for Metastatic Disease
Authors: Catenacci Daniel V.T. , Moya Stephanie , Lomnicki Samantha , Chase Leah M. , Peterson Bryan F. , Reizine Natalie , Alpert Lindsay , Setia Namrata , Xiao Shu-Yuan , Hart John , Siddiqui Uzma D. , Hogarth D. Kyle , Eng Oliver S. , Turaga Kiran , Roggin Kevin , Posner Mitchell C. , Chang Paul , Narula Sunil , Rampurwala Murtuza , Ji Yuan , Karrison Theodore , Liao Chih-Yi , Polite Blase N. , Kindler Hedy L.
Published: April 2023

Appendix
Supplementary Data from TBK1 Is a Synthetic Lethal Target in Cancer with VHL Loss
Authors: Hu Lianxin , Xie Haibiao , Liu Xijuan , Potjewyd Frances , James Lindsey I. , Wilkerson Emily M. , Herring Laura E. , Xie Ling , Chen Xian , Cabrera Johnny Castillo , Hong Kai , Liao Chengheng , Tan Xianming , Baldwin Albert S. , Gong Kan , Zhang Qing
Published: April 2023

Extended methods and supplementary figures
Supplementary Data Table S3 from Somatic HLA Class I Loss Is a Widespread Mechanism of Immune Evasion Which Refines the Use of Tumor Mutational Burden as a Biomarker of Checkpoint Inhibitor Response
Authors: Montesion Meagan , Murugesan Karthikeyan , Jin Dexter X. , Sharaf Radwa , Sanchez Nora , Guria Ameet , Minker Max , Li Gerald , Fisher Virginia , Sokol Ethan S. , Pavlick Dean C. , Moore Jay A. , Braly Alan , Singal Gaurav , Fabrizio David , Comment Leah A. , Rizvi Naiyer A. , Alexander Brian M. , Frampton Garrett M. , Hegde Priti S. , Albacker Lee A.
Published: April 2023

EGFR and ALK mutations used for exclusion in the MSK clinical cohort
Supplementary Data Figure S5 from Somatic HLA Class I Loss Is a Widespread Mechanism of Immune Evasion Which Refines the Use of Tumor Mutational Burden as a Biomarker of Checkpoint Inhibitor Response
Authors: Montesion Meagan , Murugesan Karthikeyan , Jin Dexter X. , Sharaf Radwa , Sanchez Nora , Guria Ameet , Minker Max , Li Gerald , Fisher Virginia , Sokol Ethan S. , Pavlick Dean C. , Moore Jay A. , Braly Alan , Singal Gaurav , Fabrizio David , Comment Leah A. , Rizvi Naiyer A. , Alexander Brian M. , Frampton Garrett M. , Hegde Priti S. , Albacker Lee A.
Published: April 2023

Effects of hybridization on HLA baiting efficiency
Video from Inhibition of Nuclear Pore Complex Formation Selectively Induces Cancer Cell Death
Authors: Sakuma Stephen , Raices Marcela , Borlido Joana , Guglielmi Valeria , Zhu Ethan Y.S. , D'Angelo Maximiliano A.
Published: April 2023

Supplementary Movie
Supplementary Tables from Resistance Mechanisms to SYK Inhibition in Acute Myeloid Leukemia
Authors: Cremer Anjali , Ellegast Jana M. , Alexe Gabriela , Frank Elizabeth S. , Ross Linda , Chu S. Haihua , Pikman Yana , Robichaud Amanda , Goodale Amy , Häupl Björn , Mohr Sebastian , Rao Arati V. , Walker Alison R. , Blachly James S. , Piccioni Federica , Armstrong Scott A. , Byrd John C. , Oellerich Thomas , Stegmaier Kimberly
Published: April 2023

IC50, pYome results in MV4-11 and MOLM14, ORF-Screen Data in MV4-11 and MOLM14 and merged hits, SNV indels and copy number alteration of MV4-11 naive and resistant cells
Supplementary Table 5 from Distinct Colorectal Cancer–Associated APC Mutations Dictate Response to Tankyrase Inhibition
Authors: Schatoff Emma M. , Goswami Sukanya , Zafra Maria Paz , Foronda Miguel , Shusterman Michael , Leach Benjamin I. , Katti Alyna , Diaz Bianca J. , Dow Lukas E.
Published: April 2023

Results of statistical tests
Supplementary Table 3 from Distinct Colorectal Cancer–Associated APC Mutations Dictate Response to Tankyrase Inhibition
Authors: Schatoff Emma M. , Goswami Sukanya , Zafra Maria Paz , Foronda Miguel , Shusterman Michael , Leach Benjamin I. , Katti Alyna , Diaz Bianca J. , Dow Lukas E.
Published: April 2023

Genotypes of founder Apc.1405 mice
Supplementary Table 1 from Distinct Colorectal Cancer–Associated APC Mutations Dictate Response to Tankyrase Inhibition
Authors: Schatoff Emma M. , Goswami Sukanya , Zafra Maria Paz , Foronda Miguel , Shusterman Michael , Leach Benjamin I. , Katti Alyna , Diaz Bianca J. , Dow Lukas E.
Published: April 2023

Differentially expressed genes compared to wildtype organoids
Supplementary Data from Phase I Trial of the PARP Inhibitor Olaparib and AKT Inhibitor Capivasertib in Patients with BRCA1/2- and Non–BRCA1/2-Mutant Cancers
Authors: Yap Timothy A. , Kristeleit Rebecca , Michalarea Vasiliki , Pettitt Stephen J. , Lim Joline S.J. , Carreira Suzanne , Roda Desamparados , Miller Rowan , Riisnaes Ruth , Miranda Susana , Figueiredo Ines , Rodrigues Daniel Nava , Ward Sarah , Matthews Ruth , Parmar Mona , Turner Alison , Tunariu Nina , Chopra Neha , Gevensleben Heidrun , Turner Nicholas C. , Ruddle Ruth , Raynaud Florence I. , Decordova Shaun , Swales Karen E. , Finneran Laura , Hall Emma , Rugman Paul , Lindemann Justin P.O. , Foxley Andrew , Lord Christopher J. , Banerji Udai , Plummer Ruth , Basu Bristi , Lopez Juanita S. , Drew Yvette , de Bono Johann S.
Published: April 2023

Supplementary Tables 1-7; Supplementary Figures 1-2; Supplementary Methods
Supplementary Data from Unique Neoantigens Arise from Somatic Mutations in Patients with Gastrointestinal Cancers
Authors: Parkhurst Maria R. , Robbins Paul F. , Tran Eric , Prickett Todd D. , Gartner Jared J. , Jia Li , Ivey Gabriel , Li Yong F. , El-Gamil Mona , Lalani Almin , Crystal Jessica S. , Sachs Abraham , Groh Eric , Ray Satyajit , Ngo Lien T. , Kivitz Scott , Pasetto Anna , Yossef Rami , Lowery Frank J. , Goff Stephanie L. , Lo Winifred , Cafri Gal , Deniger Drew C. , Malekzadeh Parisa , Ahmadzadeh Mojgan , Wunderlich John R. , Somerville Robert P.T. , Rosenberg Steven A.
Published: April 2023

Supplementary Table 2
Supplementary Data from Unique Neoantigens Arise from Somatic Mutations in Patients with Gastrointestinal Cancers
Authors: Parkhurst Maria R. , Robbins Paul F. , Tran Eric , Prickett Todd D. , Gartner Jared J. , Jia Li , Ivey Gabriel , Li Yong F. , El-Gamil Mona , Lalani Almin , Crystal Jessica S. , Sachs Abraham , Groh Eric , Ray Satyajit , Ngo Lien T. , Kivitz Scott , Pasetto Anna , Yossef Rami , Lowery Frank J. , Goff Stephanie L. , Lo Winifred , Cafri Gal , Deniger Drew C. , Malekzadeh Parisa , Ahmadzadeh Mojgan , Wunderlich John R. , Somerville Robert P.T. , Rosenberg Steven A.
Published: April 2023

Supplementary Tables 4-10
Supplementary Data from Genetic Ancestry Contributes to Somatic Mutations in Lung Cancers from Admixed Latin American Populations
Authors: Carrot-Zhang Jian , Soca-Chafre Giovanny , Patterson Nick , Thorner Aaron R. , Nag Anwesha , Watson Jacqueline , Genovese Giulio , Rodriguez July , Gelbard Maya K. , Corrales-Rodriguez Luis , Mitsuishi Yoichiro , Ha Gavin , Campbell Joshua D. , Oxnard Geoffrey R. , Arrieta Oscar , Cardona Andres F. , Gusev Alexander , Meyerson Matthew
Published: April 2023

Supplementary Figures
Figure S8 from Polyunsaturated Fatty Acids from Astrocytes Activate PPARγ Signaling in Cancer Cells to Promote Brain Metastasis
Authors: Zou Yongkang , Watters Andrea , Cheng Nan , Perry Caroline E. , Xu Ke , Alicea Gretchen M. , Parris Joshua L.D. , Baraban Ezra , Ray Pulak , Nayak Anupma , Xu Xiaowei , Herlyn Meenhard , Murphy Maureen E. , Weeraratna Ashani T. , Schug Zachary T. , Chen Qing
Published: April 2023

Figure S8 shows reagents used in the studies
Supplementary Tables and Figures from Deep Learning to Estimate RECIST in Patients with NSCLC Treated with PD-1 Blockade
Authors: Arbour Kathryn C. , Luu Anh Tuan , Luo Jia , Rizvi Hira , Plodkowski Andrew J. , Sakhi Mustafa , Huang Kevin B. , Digumarthy Subba R. , Ginsberg Michelle S. , Girshman Jeffrey , Kris Mark G. , Riely Gregory J. , Yala Adam , Gainor Justin F. , Barzilay Regina , Hellmann Matthew D.
Published: April 2023

Supplementary Tables and Figures
Figure S3 from β-Catenin Activation Promotes Immune Escape and Resistance to Anti–PD-1 Therapy in Hepatocellular Carcinoma
Authors: Ruiz de Galarreta Marina , Bresnahan Erin , Molina-Sánchez Pedro , Lindblad Katherine E. , Maier Barbara , Sia Daniela , Puigvehi Marc , Miguela Verónica , Casanova-Acebes María , Dhainaut Maxime , Villacorta-Martin Carlos , Singhi Aatur D. , Moghe Akshata , von Felden Johann , Tal Grinspan Lauren , Wang Shuang , Kamphorst Alice O. , Monga Satdarshan P. , Brown Brian D. , Villanueva Augusto , Llovet Josep M. , Merad Miriam , Lujambio Amaia
Published: April 2023

Figure S3
Table S1 from Interferon Signaling Is Diminished with Age and Is Associated with Immune Checkpoint Blockade Efficacy in Triple-Negative Breast Cancer
Authors: Sceneay Jaclyn , Goreczny Gregory J. , Wilson Kristin , Morrow Sara , DeCristo Molly J. , Ubellacker Jessalyn M. , Qin Yuanbo , Laszewski Tyler , Stover Daniel G. , Barrera Victor , Hutchinson John N. , Freedman Rachel A. , Mittendorf Elizabeth A. , McAllister Sandra S.
Published: April 2023

Supplementary Table 1 provides a list of the antibodies used in this study
Supplementary Data from First-in-Human Phase I Study of Fisogatinib (BLU-554) Validates Aberrant FGF19 Signaling as a Driver Event in Hepatocellular Carcinoma
Authors: Kim Richard D. , Sarker Debashis , Meyer Tim , Yau Thomas , Macarulla Teresa , Park Joong-Won , Choo Su Pin , Hollebecque Antoine , Sung Max W. , Lim Ho-Yeong , Mazzaferro Vincenzo , Trojan Joerg , Zhu Andrew X. , Yoon Jung-Hwan , Sharma Sunil , Lin Zhong-Zhe , Chan Stephen L. , Faivre Sandrine , Feun Lynn G. , Yen Chia-Jui , Dufour Jean-Francois , Palmer Daniel H. , Llovet Josep M. , Manoogian Melissa , Tugnait Meera , Stransky Nicolas , Hagel Margit , Kohl Nancy E. , Lengauer Christoph , Sherwin Cori Ann , Schmidt-Kittler Oleg , Hoeflich Klaus P. , Shi Hongliang , Wolf Beni B. , Kang Yoon-Koo
Published: April 2023

Supplement
Supplementary Figure S7 from Intraductal Transplantation Models of Human Pancreatic Ductal Adenocarcinoma Reveal Progressive Transition of Molecular Subtypes
Authors: Miyabayashi Koji , Baker Lindsey A. , Deschênes Astrid , Traub Benno , Caligiuri Giuseppina , Plenker Dennis , Alagesan Brinda , Belleau Pascal , Li Siran , Kendall Jude , Jang Gun Ho , Kawaguchi Risa Karakida , Somerville Tim D.D. , Tiriac Hervé , Hwang Chang-Il , Burkhart Richard A. , Roberts Nicholas J. , Wood Laura D. , Hruban Ralph H. , Gillis Jesse , Krasnitz Alexander , Vakoc Christopher R. , Wigler Michael , Notta Faiyaz , Gallinger Steven , Park Youngkyu , Tuveson David A.
Published: April 2023

KRAS activation promotes a more basal-like phenotype in vitro.
Supplementary Figure S5 from Intraductal Transplantation Models of Human Pancreatic Ductal Adenocarcinoma Reveal Progressive Transition of Molecular Subtypes
Authors: Miyabayashi Koji , Baker Lindsey A. , Deschênes Astrid , Traub Benno , Caligiuri Giuseppina , Plenker Dennis , Alagesan Brinda , Belleau Pascal , Li Siran , Kendall Jude , Jang Gun Ho , Kawaguchi Risa Karakida , Somerville Tim D.D. , Tiriac Hervé , Hwang Chang-Il , Burkhart Richard A. , Roberts Nicholas J. , Wood Laura D. , Hruban Ralph H. , Gillis Jesse , Krasnitz Alexander , Vakoc Christopher R. , Wigler Michael , Notta Faiyaz , Gallinger Steven , Park Youngkyu , Tuveson David A.
Published: April 2023

Copy number analysis of invasive and intraductal regions of tumors derived from IGO transplants of clonal and Autobow organoids
Supplementary Table S4 from Durable Suppression of Acquired MEK Inhibitor Resistance in Cancer by Sequestering MEK from ERK and Promoting Antitumor T-cell Immunity
Authors: Hong Aayoung , Piva Marco , Liu Sixue , Hugo Willy , Lomeli Shirley H. , Zoete Vincent , Randolph Christopher E. , Yang Zhentao , Wang Yan , Lee Jordan J. , Lo Skylar J. , Sun Lu , Vega-Crespo Agustin , Garcia Alejandro J. , Shackelford David B. , Dubinett Steven M. , Scumpia Philip O. , Byrum Stephanie D. , Tackett Alan J. , Donahue Timothy R. , Michielin Olivier , Holmen Sheri L. , Ribas Antoni , Moriceau Gatien , Lo Roger S.
Published: April 2023

Supplementary Table S4
Supplementary Figures S1-S9, Supplementary Table S1 from Limited Environmental Serine and Glycine Confer Brain Metastasis Sensitivity to PHGDH Inhibition
Authors: Ngo Bryan , Kim Eugenie , Osorio-Vasquez Victoria , Doll Sophia , Bustraan Sophia , Liang Roger J. , Luengo Alba , Davidson Shawn M. , Ali Ahmed , Ferraro Gino B. , Fischer Grant M. , Eskandari Roozbeh , Kang Diane S. , Ni Jing , Plasger Ariana , Rajasekhar Vinagolu K. , Kastenhuber Edward R. , Bacha Sarah , Sriram Roshan K. , Stein Benjamin D. , Bakhoum Samuel F. , Snuderl Matija , Cotzia Paolo , Healey John H. , Mainolfi Nello , Suri Vipin , Friedman Adam , Manfredi Mark , Sabatini David M. , Jones Drew R. , Yu Min , Zhao Jean J. , Jain Rakesh K. , Keshari Kayvan R. , Davies Michael A. , Vander Heiden Matthew G. , Hernando Eva , Mann Matthias , Cantley Lewis C. , Pacold Michael E.
Published: April 2023

Supplementary Figures and a Supplementary Table
Supplementary Table 2 from Targeting Mitochondrial Structure Sensitizes Acute Myeloid Leukemia to Venetoclax Treatment
Authors: Chen Xufeng , Glytsou Christina , Zhou Hua , Narang Sonali , Reyna Denis E. , Lopez Andrea , Sakellaropoulos Theodore , Gong Yixiao , Kloetgen Andreas , Yap Yoon Sing , Wang Eric , Gavathiotis Evripidis , Tsirigos Aristotelis , Tibes Raoul , Aifantis Iannis
Published: April 2023

CLPB interacting mitochondrial proteins in AML
Supplementary Figure from An Empirical Antigen Selection Method Identifies Neoantigens That Either Elicit Broad Antitumor T-cell Responses or Drive Tumor Growth
Authors: Lam Hubert , McNeil Lisa K. , Starobinets Hanna , DeVault Victoria L. , Cohen Roger B. , Twardowski Przemyslaw , Johnson Melissa L. , Gillison Maura L. , Stein Mark N. , Vaishampayan Ulka N. , DeCillis Arthur P. , Foti James J. , Vemulapalli Vijetha , Tjon Emily , Ferber Kyle , DeOliveira Daniel B. , Broom Wendy , Agnihotri Parul , Jaffee Elizabeth M. , Wong Kwok-Kin , Drake Charles G. , Carroll Pamela M. , Davis Thomas A. , Flechtner Jessica Baker
Published: April 2023

Supplementary Figure from An Empirical Antigen Selection Method Identifies Neoantigens That Either Elicit Broad Antitumor T-cell Responses or Drive Tumor Growth
Table S1 from Radiotherapy and Immunotherapy Promote Tumoral Lipid Oxidation and Ferroptosis via Synergistic Repression of SLC7A11
Authors: Lang Xueting , Green Michael D. , Wang Weimin , Yu Jiali , Choi Jae Eun , Jiang Long , Liao Peng , Zhou Jiajia , Zhang Qiang , Dow Ania , Saripalli Anjali L. , Kryczek Ilona , Wei Shuang , Szeliga Wojciech , Vatan Linda , Stone Everett M. , Georgiou George , Cieslik Marcin , Wahl Daniel R. , Morgan Meredith A. , Chinnaiyan Arul M. , Lawrence Theodore S. , Zou Weiping
Published: April 2023

Table S1 shows the information on the antagonists and agonists used in this study
Supplementary Data from Clinicogenomic Analysis of FGFR2-Rearranged Cholangiocarcinoma Identifies Correlates of Response and Mechanisms of Resistance to Pemigatinib
Authors: Silverman Ian M. , Hollebecque Antoine , Friboulet Luc , Owens Sherry , Newton Robert C. , Zhen Huiling , Féliz Luis , Zecchetto Camilla , Melisi Davide , Burn Timothy C.
Published: April 2023

Supplemental tables and figures
Figure S1 from Radiotherapy and Immunotherapy Promote Tumoral Lipid Oxidation and Ferroptosis via Synergistic Repression of SLC7A11
Authors: Lang Xueting , Green Michael D. , Wang Weimin , Yu Jiali , Choi Jae Eun , Jiang Long , Liao Peng , Zhou Jiajia , Zhang Qiang , Dow Ania , Saripalli Anjali L. , Kryczek Ilona , Wei Shuang , Szeliga Wojciech , Vatan Linda , Stone Everett M. , Georgiou George , Cieslik Marcin , Wahl Daniel R. , Morgan Meredith A. , Chinnaiyan Arul M. , Lawrence Theodore S. , Zou Weiping
Published: April 2023

Figure S1 shows that radiotherapy can induce tumor cell ferroptosis
Table S8 from Aging Human Hematopoietic Stem Cells Manifest Profound Epigenetic Reprogramming of Enhancers That May Predispose to Leukemia
Authors: Adelman Emmalee R. , Huang Hsuan-Ting , Roisman Alejandro , Olsson André , Colaprico Antonio , Qin Tingting , Lindsley R. Coleman , Bejar Rafael , Salomonis Nathan , Grimes H. Leighton , Figueroa Maria E.
Published: April 2023

Overlap with aging signatures
Table S11 from Aging Human Hematopoietic Stem Cells Manifest Profound Epigenetic Reprogramming of Enhancers That May Predispose to Leukemia
Authors: Adelman Emmalee R. , Huang Hsuan-Ting , Roisman Alejandro , Olsson André , Colaprico Antonio , Qin Tingting , Lindsley R. Coleman , Bejar Rafael , Salomonis Nathan , Grimes H. Leighton , Figueroa Maria E.
Published: April 2023

Oligonucleotides
Table S1 from Aging Human Hematopoietic Stem Cells Manifest Profound Epigenetic Reprogramming of Enhancers That May Predispose to Leukemia
Authors: Adelman Emmalee R. , Huang Hsuan-Ting , Roisman Alejandro , Olsson André , Colaprico Antonio , Qin Tingting , Lindsley R. Coleman , Bejar Rafael , Salomonis Nathan , Grimes H. Leighton , Figueroa Maria E.
Published: April 2023

Donor information
Supplementary Data from Aging Human Hematopoietic Stem Cells Manifest Profound Epigenetic Reprogramming of Enhancers That May Predispose to Leukemia
Authors: Adelman Emmalee R. , Huang Hsuan-Ting , Roisman Alejandro , Olsson André , Colaprico Antonio , Qin Tingting , Lindsley R. Coleman , Bejar Rafael , Salomonis Nathan , Grimes H. Leighton , Figueroa Maria E.
Published: April 2023

Supplementary Figures
Table S2 from RBMS1 Suppresses Colon Cancer Metastasis through Targeted Stabilization of Its mRNA Regulon
Authors: Yu Johnny , Navickas Albertas , Asgharian Hosseinali , Culbertson Bruce , Fish Lisa , Garcia Kristle , Olegario John Paolo , Dermit Maria , Dodel Martin , Hänisch Benjamin , Luo Yikai , Weinberg Ethan M. , Dienstmann Rodrigo , Warren Robert S. , Mardakheh Faraz K. , Goodarzi Hani
Published: April 2023

CoIP-MS and TMT-MS/MS data
Table S1 from RBMS1 Suppresses Colon Cancer Metastasis through Targeted Stabilization of Its mRNA Regulon
Authors: Yu Johnny , Navickas Albertas , Asgharian Hosseinali , Culbertson Bruce , Fish Lisa , Garcia Kristle , Olegario John Paolo , Dermit Maria , Dodel Martin , Hänisch Benjamin , Luo Yikai , Weinberg Ethan M. , Dienstmann Rodrigo , Warren Robert S. , Mardakheh Faraz K. , Goodarzi Hani
Published: April 2023

RBMS1 putative regulons, RBMS1 target list, RBMS1 80-gene signature list
Supplementary Table 6 from Mechanisms of Lymphoma Clearance Induced by High-Dose Alkylating Agents
Authors: Lossos Chen , Liu Yunpeng , Kolb Kellie E. , Christie Amanda L. , Van Scoyk Alexandria , Prakadan Sanjay M. , Shigemori Kay , Stevenson Kristen E. , Morrow Sara , Plana Olivia D. , Fraser Cameron , Jones Kristen L. , Liu Huiyun , Pallasch Christian P. , Modiste Rebecca , Nguyen Quang-De , Craig Jeffrey W. , Morgan Elizabeth A. , Vega Francisco , Aster Jon C. , Sarosiek Kristopher A. , Shalek Alex K. , Hemann Michael T. , Weinstock David M.
Published: April 2023

Supplementary Table 6
Supplementary Methods from RBMS1 Suppresses Colon Cancer Metastasis through Targeted Stabilization of Its mRNA Regulon
Authors: Yu Johnny , Navickas Albertas , Asgharian Hosseinali , Culbertson Bruce , Fish Lisa , Garcia Kristle , Olegario John Paolo , Dermit Maria , Dodel Martin , Hänisch Benjamin , Luo Yikai , Weinberg Ethan M. , Dienstmann Rodrigo , Warren Robert S. , Mardakheh Faraz K. , Goodarzi Hani
Published: April 2023

Supplementary Methods
Supplementary Table 5 from Mechanisms of Lymphoma Clearance Induced by High-Dose Alkylating Agents
Authors: Lossos Chen , Liu Yunpeng , Kolb Kellie E. , Christie Amanda L. , Van Scoyk Alexandria , Prakadan Sanjay M. , Shigemori Kay , Stevenson Kristen E. , Morrow Sara , Plana Olivia D. , Fraser Cameron , Jones Kristen L. , Liu Huiyun , Pallasch Christian P. , Modiste Rebecca , Nguyen Quang-De , Craig Jeffrey W. , Morgan Elizabeth A. , Vega Francisco , Aster Jon C. , Sarosiek Kristopher A. , Shalek Alex K. , Hemann Michael T. , Weinstock David M.
Published: April 2023

Supplementary Table 5
Supplementary Material 2 from RBMS1 Suppresses Colon Cancer Metastasis through Targeted Stabilization of Its mRNA Regulon
Authors: Yu Johnny , Navickas Albertas , Asgharian Hosseinali , Culbertson Bruce , Fish Lisa , Garcia Kristle , Olegario John Paolo , Dermit Maria , Dodel Martin , Hänisch Benjamin , Luo Yikai , Weinberg Ethan M. , Dienstmann Rodrigo , Warren Robert S. , Mardakheh Faraz K. , Goodarzi Hani
Published: April 2023

The description of benchmarking PRADA
Supplementary Table 4 from Mechanisms of Lymphoma Clearance Induced by High-Dose Alkylating Agents
Authors: Lossos Chen , Liu Yunpeng , Kolb Kellie E. , Christie Amanda L. , Van Scoyk Alexandria , Prakadan Sanjay M. , Shigemori Kay , Stevenson Kristen E. , Morrow Sara , Plana Olivia D. , Fraser Cameron , Jones Kristen L. , Liu Huiyun , Pallasch Christian P. , Modiste Rebecca , Nguyen Quang-De , Craig Jeffrey W. , Morgan Elizabeth A. , Vega Francisco , Aster Jon C. , Sarosiek Kristopher A. , Shalek Alex K. , Hemann Michael T. , Weinstock David M.
Published: April 2023

Supplementary Table 4
Supplementary Material 1 from RBMS1 Suppresses Colon Cancer Metastasis through Targeted Stabilization of Its mRNA Regulon
Authors: Yu Johnny , Navickas Albertas , Asgharian Hosseinali , Culbertson Bruce , Fish Lisa , Garcia Kristle , Olegario John Paolo , Dermit Maria , Dodel Martin , Hänisch Benjamin , Luo Yikai , Weinberg Ethan M. , Dienstmann Rodrigo , Warren Robert S. , Mardakheh Faraz K. , Goodarzi Hani
Published: April 2023

The schematics of the data flow used for analysis
Figure S7 from RBMS1 Suppresses Colon Cancer Metastasis through Targeted Stabilization of Its mRNA Regulon
Authors: Yu Johnny , Navickas Albertas , Asgharian Hosseinali , Culbertson Bruce , Fish Lisa , Garcia Kristle , Olegario John Paolo , Dermit Maria , Dodel Martin , Hänisch Benjamin , Luo Yikai , Weinberg Ethan M. , Dienstmann Rodrigo , Warren Robert S. , Mardakheh Faraz K. , Goodarzi Hani
Published: April 2023

Supplementary Figure 7
Figure S6 from RBMS1 Suppresses Colon Cancer Metastasis through Targeted Stabilization of Its mRNA Regulon
Authors: Yu Johnny , Navickas Albertas , Asgharian Hosseinali , Culbertson Bruce , Fish Lisa , Garcia Kristle , Olegario John Paolo , Dermit Maria , Dodel Martin , Hänisch Benjamin , Luo Yikai , Weinberg Ethan M. , Dienstmann Rodrigo , Warren Robert S. , Mardakheh Faraz K. , Goodarzi Hani
Published: April 2023

Supplementary Figure 6
Supplementary Table 1 from Mechanisms of Lymphoma Clearance Induced by High-Dose Alkylating Agents
Authors: Lossos Chen , Liu Yunpeng , Kolb Kellie E. , Christie Amanda L. , Van Scoyk Alexandria , Prakadan Sanjay M. , Shigemori Kay , Stevenson Kristen E. , Morrow Sara , Plana Olivia D. , Fraser Cameron , Jones Kristen L. , Liu Huiyun , Pallasch Christian P. , Modiste Rebecca , Nguyen Quang-De , Craig Jeffrey W. , Morgan Elizabeth A. , Vega Francisco , Aster Jon C. , Sarosiek Kristopher A. , Shalek Alex K. , Hemann Michael T. , Weinstock David M.
Published: April 2023

Supplementary Table 1
Figure S2 from RBMS1 Suppresses Colon Cancer Metastasis through Targeted Stabilization of Its mRNA Regulon
Authors: Yu Johnny , Navickas Albertas , Asgharian Hosseinali , Culbertson Bruce , Fish Lisa , Garcia Kristle , Olegario John Paolo , Dermit Maria , Dodel Martin , Hänisch Benjamin , Luo Yikai , Weinberg Ethan M. , Dienstmann Rodrigo , Warren Robert S. , Mardakheh Faraz K. , Goodarzi Hani
Published: April 2023

Supplementary Figure 2
Figure S1 from RBMS1 Suppresses Colon Cancer Metastasis through Targeted Stabilization of Its mRNA Regulon
Authors: Yu Johnny , Navickas Albertas , Asgharian Hosseinali , Culbertson Bruce , Fish Lisa , Garcia Kristle , Olegario John Paolo , Dermit Maria , Dodel Martin , Hänisch Benjamin , Luo Yikai , Weinberg Ethan M. , Dienstmann Rodrigo , Warren Robert S. , Mardakheh Faraz K. , Goodarzi Hani
Published: April 2023

Supplementary Figure 1
Clinical Trial Protocol from Combination Olaparib and Temozolomide in Relapsed Small-Cell Lung Cancer
Authors: Farago Anna F. , Yeap Beow Y. , Stanzione Marcello , Hung Yin P. , Heist Rebecca S. , Marcoux J. Paul , Zhong Jun , Rangachari Deepa , Barbie David A. , Phat Sarah , Myers David T. , Morris Robert , Kem Marina , Dubash Taronish D. , Kennedy Elizabeth A. , Digumarthy Subba R. , Sequist Lecia V. , Hata Aaron N. , Maheswaran Shyamala , Haber Daniel A. , Lawrence Michael S. , Shaw Alice T. , Mino-Kenudson Mari , Dyson Nicholas J. , Drapkin Benjamin J.
Published: April 2023

Clinical trial protocol
Table S5 from Immune Surveillance in Clinical Regression of Preinvasive Squamous Cell Lung Cancer
Authors: Pennycuick Adam , Teixeira Vitor H. , AbdulJabbar Khalid , Raza Shan E. Ahmed , Lund Tom , Akarca Ayse U. , Rosenthal Rachel , Kalinke Lukas , Chandrasekharan Deepak P. , Pipinikas Christodoulos P. , Lee-Six Henry , Hynds Robert E. , Gowers Kate H.C. , Henry Jake Y. , Millar Fraser R. , Hagos Yeman B. , Denais Celine , Falzon Mary , Moore David A. , Antoniou Sophia , Durrenberger Pascal F. , Furness Andrew J. , Carroll Bernadette , Marceaux Claire , Asselin-Labat Marie-Liesse , Larson William , Betts Courtney , Coussens Lisa M. , Thakrar Ricky M. , George Jeremy , Swanton Charles , Thirlwell Christina , Campbell Peter J. , Marafioti Teresa , Yuan Yinyin , Quezada Sergio A. , McGranahan Nicholas , Janes Sam M.
Published: April 2023

Pathway analysis comparing the illumina and Affymetrix datasets as described in Supplementary Methods.
Table S4 from Immune Surveillance in Clinical Regression of Preinvasive Squamous Cell Lung Cancer
Authors: Pennycuick Adam , Teixeira Vitor H. , AbdulJabbar Khalid , Raza Shan E. Ahmed , Lund Tom , Akarca Ayse U. , Rosenthal Rachel , Kalinke Lukas , Chandrasekharan Deepak P. , Pipinikas Christodoulos P. , Lee-Six Henry , Hynds Robert E. , Gowers Kate H.C. , Henry Jake Y. , Millar Fraser R. , Hagos Yeman B. , Denais Celine , Falzon Mary , Moore David A. , Antoniou Sophia , Durrenberger Pascal F. , Furness Andrew J. , Carroll Bernadette , Marceaux Claire , Asselin-Labat Marie-Liesse , Larson William , Betts Courtney , Coussens Lisa M. , Thakrar Ricky M. , George Jeremy , Swanton Charles , Thirlwell Christina , Campbell Peter J. , Marafioti Teresa , Yuan Yinyin , Quezada Sergio A. , McGranahan Nicholas , Janes Sam M.
Published: April 2023

Gene lists used in this analysis.
Supplementary Figures and Tables from A TLR3 Ligand Reestablishes Chemotherapeutic Responses in the Context of FPR1 Deficiency
Authors: Le Naour Julie , Liu Peng , Zhao Liwei , Adjemian Sandy , Sztupinszki Zsofia , Taieb Julien , Mulot Claire , Silvin Aymeric , Dutertre Charles-Antoine , Ginhoux Florent , Sauvat Allan , Cerrato Giulia , Castoldi Francesca , Martins Isabelle , Stoll Gautier , Paillet Juliette , Mangane Khady , Richter Cornelia , Kepp Oliver , Maiuri Maria Chiara , Pietrocola Federico , Vandenabeele Peter , André Fabrice , Delaloge Suzette , Szallasi Zoltan , Laurent-Puig Pierre , Zucman-Rossi Jessica , Zitvogel Laurence , Pol Jonathan G. , Vacchelli Erika , Kroemer Guido
Published: April 2023

Supplementary Figures and Tables
Table S3 from Immune Surveillance in Clinical Regression of Preinvasive Squamous Cell Lung Cancer
Authors: Pennycuick Adam , Teixeira Vitor H. , AbdulJabbar Khalid , Raza Shan E. Ahmed , Lund Tom , Akarca Ayse U. , Rosenthal Rachel , Kalinke Lukas , Chandrasekharan Deepak P. , Pipinikas Christodoulos P. , Lee-Six Henry , Hynds Robert E. , Gowers Kate H.C. , Henry Jake Y. , Millar Fraser R. , Hagos Yeman B. , Denais Celine , Falzon Mary , Moore David A. , Antoniou Sophia , Durrenberger Pascal F. , Furness Andrew J. , Carroll Bernadette , Marceaux Claire , Asselin-Labat Marie-Liesse , Larson William , Betts Courtney , Coussens Lisa M. , Thakrar Ricky M. , George Jeremy , Swanton Charles , Thirlwell Christina , Campbell Peter J. , Marafioti Teresa , Yuan Yinyin , Quezada Sergio A. , McGranahan Nicholas , Janes Sam M.
Published: April 2023

Immune cell deconvolution from molecular data. Relative proportions of immune cell subtypes are predicted from gene expression data using the Danaher method, and from methylation data using methylCIBERSORT. Differences between progressive and regressive groups are reported here.
Supplementary Data from Immune Surveillance in Clinical Regression of Preinvasive Squamous Cell Lung Cancer
Authors: Pennycuick Adam , Teixeira Vitor H. , AbdulJabbar Khalid , Raza Shan E. Ahmed , Lund Tom , Akarca Ayse U. , Rosenthal Rachel , Kalinke Lukas , Chandrasekharan Deepak P. , Pipinikas Christodoulos P. , Lee-Six Henry , Hynds Robert E. , Gowers Kate H.C. , Henry Jake Y. , Millar Fraser R. , Hagos Yeman B. , Denais Celine , Falzon Mary , Moore David A. , Antoniou Sophia , Durrenberger Pascal F. , Furness Andrew J. , Carroll Bernadette , Marceaux Claire , Asselin-Labat Marie-Liesse , Larson William , Betts Courtney , Coussens Lisa M. , Thakrar Ricky M. , George Jeremy , Swanton Charles , Thirlwell Christina , Campbell Peter J. , Marafioti Teresa , Yuan Yinyin , Quezada Sergio A. , McGranahan Nicholas , Janes Sam M.
Published: April 2023

Supplementary Methods
Supplementary Table 3 from Identification of Novel Therapeutic Targets for Fibrolamellar Carcinoma Using Patient-Derived Xenografts and Direct-from-Patient Screening
Authors: Lalazar Gadi , Requena David , Ramos-Espiritu Lavoisier , Ng Denise , Bhola Patrick D. , de Jong Ype P. , Wang Ruisi , Narayan Nicole J.C. , Shebl Bassem , Levin Solomon , Michailidis Eleftherios , Kabbani Mohammad , Vercauteren Koen O.A. , Hurley Arlene M. , Farber Benjamin A. , Hammond William J. , Saltsman James A. , Weinberg Ethan M. , Glickman J. Fraser , Lyons Barbara A. , Ellison Jessica , Schadde Erik , Hertl Martin , Leiting Jennifer L. , Truty Mark J. , Smoot Rory L. , Tierney Faith , Kato Tomoaki , Wendel Hans-Guido , LaQuaglia Michael P. , Rice Charles M. , Letai Anthony , Coffino Philip , Torbenson Michael S. , Ortiz Michael V. , Simon Sanford M.
Published: April 2023

List of compounds in the primary screen
Supplementary Figures and Data from Identification of Novel Therapeutic Targets for Fibrolamellar Carcinoma Using Patient-Derived Xenografts and Direct-from-Patient Screening
Authors: Lalazar Gadi , Requena David , Ramos-Espiritu Lavoisier , Ng Denise , Bhola Patrick D. , de Jong Ype P. , Wang Ruisi , Narayan Nicole J.C. , Shebl Bassem , Levin Solomon , Michailidis Eleftherios , Kabbani Mohammad , Vercauteren Koen O.A. , Hurley Arlene M. , Farber Benjamin A. , Hammond William J. , Saltsman James A. , Weinberg Ethan M. , Glickman J. Fraser , Lyons Barbara A. , Ellison Jessica , Schadde Erik , Hertl Martin , Leiting Jennifer L. , Truty Mark J. , Smoot Rory L. , Tierney Faith , Kato Tomoaki , Wendel Hans-Guido , LaQuaglia Michael P. , Rice Charles M. , Letai Anthony , Coffino Philip , Torbenson Michael S. , Ortiz Michael V. , Simon Sanford M.
Published: April 2023

Supplementary Figure 1 - 6 and Supplementary Tables 1, 2, and 4
Supplementary Table from Splicing Patterns in SF3B1-Mutated Uveal Melanoma Generate Shared Immunogenic Tumor-Specific Neoepitopes
Authors: Bigot Jeremy , Lalanne Ana I. , Lucibello Francesca , Gueguen Paul , Houy Alexandre , Dayot Stephane , Ganier Olivier , Gilet Jules , Tosello Jimena , Nemati Fariba , Pierron Gaelle , Waterfall Joshua J. , Barnhill Raymond , Gardrat Sophie , Piperno-Neumann Sophie , Popova Tatiana , Masson Vanessa , Loew Damarys , Mariani Pascale , Cassoux Nathalie , Amigorena Sebastian , Rodrigues Manuel , Alsafadi Samar , Stern Marc-Henri , Lantz Olivier
Published: April 2023

Supplementary Table from Splicing Patterns in SF3B1-Mutated Uveal Melanoma Generate Shared Immunogenic Tumor-Specific Neoepitopes
Supplementary Data from Integrative Bulk and Single-Cell Profiling of Premanufacture T-cell Populations Reveals Factors Mediating Long-Term Persistence of CAR T-cell Therapy
Authors: Chen Gregory M. , Chen Changya , Das Rajat K. , Gao Peng , Chen Chia-Hui , Bandyopadhyay Shovik , Ding Yang-Yang , Uzun Yasin , Yu Wenbao , Zhu Qin , Myers Regina M. , Grupp Stephan A. , Barrett David M. , Tan Kai
Published: April 2023

Supplementary tables 1-4 and figures 1-11
Supplementary Figures from Integrated Genomic Analysis Identifies Driver Genes and Cisplatin-Resistant Progenitor Phenotype in Pediatric Liver Cancer
Authors: Hirsch Theo Z. , Pilet Jill , Morcrette Guillaume , Roehrig Amélie , Monteiro Benedict J.E. , Molina Laura , Bayard Quentin , Trépo Eric , Meunier Léa , Caruso Stefano , Renault Victor , Deleuze Jean-François , Fresneau Brice , Chardot Christophe , Gonzales Emmanuel , Jacquemin Emmanuel , Guerin Florent , Fabre Monique , Aerts Isabelle , Taque Sophie , Laithier Véronique , Branchereau Sophie , Guettier Catherine , Brugières Laurence , Rebouissou Sandra , Letouzé Eric , Zucman-Rossi Jessica
Published: April 2023

All 17 supplementary figures and legends in a pdf file
Supplementary Figure from Splicing Patterns in SF3B1-Mutated Uveal Melanoma Generate Shared Immunogenic Tumor-Specific Neoepitopes
Authors: Bigot Jeremy , Lalanne Ana I. , Lucibello Francesca , Gueguen Paul , Houy Alexandre , Dayot Stephane , Ganier Olivier , Gilet Jules , Tosello Jimena , Nemati Fariba , Pierron Gaelle , Waterfall Joshua J. , Barnhill Raymond , Gardrat Sophie , Piperno-Neumann Sophie , Popova Tatiana , Masson Vanessa , Loew Damarys , Mariani Pascale , Cassoux Nathalie , Amigorena Sebastian , Rodrigues Manuel , Alsafadi Samar , Stern Marc-Henri , Lantz Olivier
Published: April 2023

Supplementary Figure from Splicing Patterns in SF3B1-Mutated Uveal Melanoma Generate Shared Immunogenic Tumor-Specific Neoepitopes
Supplementary Tables and Figure Legends from Reducing Skin Toxicities from EGFR Inhibitors with Topical BRAF Inhibitor Therapy
Authors: Lacouture Mario E. , Wainberg Zev A. , Patel Anisha B. , Anadkat Milan J. , Stemmer Salomon M. , Shacham-Shmueli Einat , Medina Egmidio , Zelinger Galit , Shelach Noa , Ribas Antoni
Published: April 2023

Supplementary Tables and Figure Legends
Supplementary Data from Overcoming Resistance to Tumor-Targeted and Immune-Targeted Therapies
Authors: Aldea Mihaela , Andre Fabrice , Marabelle Aurelien , Dogan Semih , Barlesi Fabrice , Soria Jean-Charles
Published: April 2023

Supplementary Tables
Supplementary Data from Leukocyte Heterogeneity in Pancreatic Ductal Adenocarcinoma: Phenotypic and Spatial Features Associated with Clinical Outcome
Authors: Liudahl Shannon M. , Betts Courtney B. , Sivagnanam Shamilene , Morales-Oyarvide Vicente , da Silva Annacarolina , Yuan Chen , Hwang Samuel , Grossblatt-Wait Alison , Leis Kenna R. , Larson William , Lavoie Meghan B. , Robinson Padraic , Dias Costa Andressa , Väyrynen Sara A. , Clancy Thomas E. , Rubinson Douglas A. , Link Jason , Keith Dove , Horton Wesley , Tempero Margaret A. , Vonderheide Robert H. , Jaffee Elizabeth M. , Sheppard Brett , Goecks Jeremy , Sears Rosalie C. , Park Byung S. , Mori Motomi , Nowak Jonathan A. , Wolpin Brian M. , Coussens Lisa M.
Published: April 2023

File contains supplementary Materials & Methods, supplementary References, and Supplementary Tables S1-S10.
Figure S2 from Leukocyte Heterogeneity in Pancreatic Ductal Adenocarcinoma: Phenotypic and Spatial Features Associated with Clinical Outcome
Authors: Liudahl Shannon M. , Betts Courtney B. , Sivagnanam Shamilene , Morales-Oyarvide Vicente , da Silva Annacarolina , Yuan Chen , Hwang Samuel , Grossblatt-Wait Alison , Leis Kenna R. , Larson William , Lavoie Meghan B. , Robinson Padraic , Dias Costa Andressa , Väyrynen Sara A. , Clancy Thomas E. , Rubinson Douglas A. , Link Jason , Keith Dove , Horton Wesley , Tempero Margaret A. , Vonderheide Robert H. , Jaffee Elizabeth M. , Sheppard Brett , Goecks Jeremy , Sears Rosalie C. , Park Byung S. , Mori Motomi , Nowak Jonathan A. , Wolpin Brian M. , Coussens Lisa M.
Published: April 2023

Figure S2 is related to Figure 2 and contains data from global unsupervised clustering analysis of treatment naive PDACs. Data include cell densities of leukocyte subpopulations by cluster, quantification of tissue area evaluated in patients within each cluster, and t-SNE representations showing leukocyte density within regions of interest.
Mutant p53-associated genes from Oncogenic KRAS Recruits an Expansive Transcriptional Network through Mutant p53 to Drive Pancreatic Cancer Metastasis
Authors: Kim Michael P. , Li Xinqun , Deng Jenying , Zhang Yun , Dai Bingbing , Allton Kendra L. , Hughes Tara G. , Siangco Christian , Augustine Jithesh J. , Kang Ya'an , McDaniel Joy M. , Xiong Shunbin , Koay Eugene J. , McAllister Florencia , Bristow Christopher A. , Heffernan Timothy P. , Maitra Anirban , Liu Bin , Barton Michelle C. , Wasylishen Amanda R. , Fleming Jason B. , Lozano Guillermina
Published: April 2023

Mutant p53-associated genes
Figure S5 from Oncogenic KRAS Recruits an Expansive Transcriptional Network through Mutant p53 to Drive Pancreatic Cancer Metastasis
Authors: Kim Michael P. , Li Xinqun , Deng Jenying , Zhang Yun , Dai Bingbing , Allton Kendra L. , Hughes Tara G. , Siangco Christian , Augustine Jithesh J. , Kang Ya'an , McDaniel Joy M. , Xiong Shunbin , Koay Eugene J. , McAllister Florencia , Bristow Christopher A. , Heffernan Timothy P. , Maitra Anirban , Liu Bin , Barton Michelle C. , Wasylishen Amanda R. , Fleming Jason B. , Lozano Guillermina
Published: April 2023

Supplementary Figure 5
Supplementary Table S1 from Selective Modulation of a Pan-Essential Protein as a Therapeutic Strategy in Cancer
Authors: Malone Clare F. , Dharia Neekesh V. , Kugener Guillaume , Forman Alexandra B. , Rothberg Michael V. , Abdusamad Mai , Gonzalez Alfredo , Kuljanin Miljan , Robichaud Amanda L. , Conway Amy Saur , Dempster Joshua M. , Paolella Brenton R. , Dumont Nancy , Hovestadt Volker , Mancias Joseph D. , Younger Scott T. , Root David E. , Golub Todd R. , Vazquez Francisca , Stegmaier Kimberly
Published: April 2023

CRISPR guide sequences
Supplementary Figure S5 from Selective Modulation of a Pan-Essential Protein as a Therapeutic Strategy in Cancer
Authors: Malone Clare F. , Dharia Neekesh V. , Kugener Guillaume , Forman Alexandra B. , Rothberg Michael V. , Abdusamad Mai , Gonzalez Alfredo , Kuljanin Miljan , Robichaud Amanda L. , Conway Amy Saur , Dempster Joshua M. , Paolella Brenton R. , Dumont Nancy , Hovestadt Volker , Mancias Joseph D. , Younger Scott T. , Root David E. , Golub Todd R. , Vazquez Francisca , Stegmaier Kimberly
Published: April 2023

Differential NXT2 expression in neuroblastoma cell lines
Figure S1 from Oncogenic KRAS Recruits an Expansive Transcriptional Network through Mutant p53 to Drive Pancreatic Cancer Metastasis
Authors: Kim Michael P. , Li Xinqun , Deng Jenying , Zhang Yun , Dai Bingbing , Allton Kendra L. , Hughes Tara G. , Siangco Christian , Augustine Jithesh J. , Kang Ya'an , McDaniel Joy M. , Xiong Shunbin , Koay Eugene J. , McAllister Florencia , Bristow Christopher A. , Heffernan Timothy P. , Maitra Anirban , Liu Bin , Barton Michelle C. , Wasylishen Amanda R. , Fleming Jason B. , Lozano Guillermina
Published: April 2023

Supplementary Figure 1
Supplementary Figure S3 from Selective Modulation of a Pan-Essential Protein as a Therapeutic Strategy in Cancer
Authors: Malone Clare F. , Dharia Neekesh V. , Kugener Guillaume , Forman Alexandra B. , Rothberg Michael V. , Abdusamad Mai , Gonzalez Alfredo , Kuljanin Miljan , Robichaud Amanda L. , Conway Amy Saur , Dempster Joshua M. , Paolella Brenton R. , Dumont Nancy , Hovestadt Volker , Mancias Joseph D. , Younger Scott T. , Root David E. , Golub Todd R. , Vazquez Francisca , Stegmaier Kimberly
Published: April 2023

NXT2 loss leads to loss of NXF1
Supplementary Figure S2 from Selective Modulation of a Pan-Essential Protein as a Therapeutic Strategy in Cancer
Authors: Malone Clare F. , Dharia Neekesh V. , Kugener Guillaume , Forman Alexandra B. , Rothberg Michael V. , Abdusamad Mai , Gonzalez Alfredo , Kuljanin Miljan , Robichaud Amanda L. , Conway Amy Saur , Dempster Joshua M. , Paolella Brenton R. , Dumont Nancy , Hovestadt Volker , Mancias Joseph D. , Younger Scott T. , Root David E. , Golub Todd R. , Vazquez Francisca , Stegmaier Kimberly
Published: April 2023

NXT1 is a selective and lethal dependency in neuroblastoma
Supplemental Figure S1 from Selective Modulation of a Pan-Essential Protein as a Therapeutic Strategy in Cancer
Authors: Malone Clare F. , Dharia Neekesh V. , Kugener Guillaume , Forman Alexandra B. , Rothberg Michael V. , Abdusamad Mai , Gonzalez Alfredo , Kuljanin Miljan , Robichaud Amanda L. , Conway Amy Saur , Dempster Joshua M. , Paolella Brenton R. , Dumont Nancy , Hovestadt Volker , Mancias Joseph D. , Younger Scott T. , Root David E. , Golub Todd R. , Vazquez Francisca , Stegmaier Kimberly
Published: April 2023

CRISPR screens prioritize rapidly lethal in vivo relevant dependencies
Table S7 from Anti-Inflammatory Drugs Remodel the Tumor Immune Environment to Enhance Immune Checkpoint Blockade Efficacy
Authors: Pelly Victoria S. , Moeini Agrin , Roelofsen Lisanne M. , Bonavita Eduardo , Bell Charlotte R. , Hutton Colin , Blanco-Gomez Adrian , Banyard Antonia , Bromley Christian P. , Flanagan Eimear , Chiang Shih-Chieh , Jørgensen Claus , Schumacher Ton N. , Thommen Daniela S. , Zelenay Santiago
Published: April 2023

Table S7
Table S6 from Anti-Inflammatory Drugs Remodel the Tumor Immune Environment to Enhance Immune Checkpoint Blockade Efficacy
Authors: Pelly Victoria S. , Moeini Agrin , Roelofsen Lisanne M. , Bonavita Eduardo , Bell Charlotte R. , Hutton Colin , Blanco-Gomez Adrian , Banyard Antonia , Bromley Christian P. , Flanagan Eimear , Chiang Shih-Chieh , Jørgensen Claus , Schumacher Ton N. , Thommen Daniela S. , Zelenay Santiago
Published: April 2023

Table S6
Table S2 from Anti-Inflammatory Drugs Remodel the Tumor Immune Environment to Enhance Immune Checkpoint Blockade Efficacy
Authors: Pelly Victoria S. , Moeini Agrin , Roelofsen Lisanne M. , Bonavita Eduardo , Bell Charlotte R. , Hutton Colin , Blanco-Gomez Adrian , Banyard Antonia , Bromley Christian P. , Flanagan Eimear , Chiang Shih-Chieh , Jørgensen Claus , Schumacher Ton N. , Thommen Daniela S. , Zelenay Santiago
Published: April 2023

Table S2
Supplementary Table S5 from Discovery of Candidate DNA Methylation Cancer Driver Genes
Authors: Pan Heng , Renaud Loïc , Chaligne Ronan , Bloehdorn Johannes , Tausch Eugen , Mertens Daniel , Fink Anna Maria , Fischer Kirsten , Zhang Chao , Betel Doron , Gnirke Andreas , Imielinski Marcin , Moreaux Jérôme , Hallek Michael , Meissner Alexander , Stilgenbauer Stephan , Wu Catherine J. , Elemento Olivier , Landau Dan A.
Published: April 2023

MethSig DNAme drivers enriched pathways.