bluuebunny/crossref_metadata_2025 huggingface dataset:
Supplementary Figure 2 from Analysis of mRNA Profiles after MEK1/2 Inhibition in Human Pancreatic Cancer Cell Lines Reveals Pathways Involved in Drug Sensitivity
Authors: Gysin Stephan , Paquette Jesse , McMahon Martin
Published: April 2023

PDF file, 39K, Fold regulation of c-MYC mRNA in PDA derived cell lines following MEK inhibition with CI-1040.
Supplemental Figures 1 and 2 from Alternative NHEJ Pathway Components Are Therapeutic Targets in High-Risk Neuroblastoma
Authors: Newman Erika A. , Lu Fujia , Bashllari Daniela , Wang Li , Opipari Anthony W. , Castle Valerie P.
Published: April 2023

Supplemental 1: Reporter substrates were utilized for HR and NHEJ quantification analysis. Supplemental 2: Plasmid end-joining errors were detected utilizing pGFP-PEM1 with BsrG1.
Supplementary Tables 1-6 from Single-Cell Transcriptomics Analysis Identifies Nuclear Protein 1 as a Regulator of Docetaxel Resistance in Prostate Cancer Cells
Authors: Schnepp Patricia M. , Shelley Greg , Dai Jinlu , Wakim Nicole , Jiang Hui , Mizokami Atsushi , Keller Evan T.
Published: April 2023

Supplementary Table 1: Differential Gene Expression Analysis in Individual Cell Lines Supplementary Table 2: Genes and ranking based on their single cell expression with probability (Q value) for DU145 resistant versus sensitive cells. Supplementary Table 3: PANTHER Results for Cellular Location for Individual Cell Lines Supplementary Table 4: PANTHER Results for Molecular Function for Individual Cell Lines Supplementary Table 5: IPA Gene Pathway Results Supplementary Table 6: IPA Regulator Results
Supplemental Figure S1 from Elevated Slit2 Activity Impairs VEGF-Induced Angiogenesis and Tumor Neovascularization in EphA2-Deficient Endothelium
Authors: Youngblood Victoria , Wang Shan , Song Wenqiang , Walter Debra , Hwang Yoonha , Chen Jin , Brantley-Sieders Dana M.
Published: April 2023

Supplemental Figure S1: Dose response for Slit2-mediated inhibition of VEGF-induced vascular assembly.
Supplementary Figure 3 from The E6 Oncoprotein from HPV16 Enhances the Canonical Wnt/β-Catenin Pathway in Skin Epidermis In Vivo
Authors: Bonilla-Delgado José , Bulut Gülay , Liu Xuefeng , Cortés-Malagón Enoc M. , Schlegel Richard , Flores-Maldonado Catalina , Contreras Rubén G. , Chung Sang-Hyuk , Lambert Paul F. , Üren Aykut , Gariglio Patricio
Published: April 2023

PDF file - 103K, The E6 oncoprotein interacts with Dvl2 but not with Dvl1 or Dvl3. COS7 cells were transiently transfected with HPV-E6 and one of the Dvl cDNAs. HPV-E6 was tagged with AU1, and the Dvl genes included Flag tags. Cell lysates were prepared 48 h after transfection, and immunoprecipitation was performed with either an anti-flag antibody or anti-AU1 antibody. The immunoprecipitates were separated on a 10% acrylamide gel and transferred to membranes, and western blots were performed using anti-Flag and anti-AU1 antibodies. The Dvl proteins are indicated by arrows and the E6 proteins are indicated by the arrowheads. All three of the Dvl proteins (upper left panel) and HPV-E6 (lower right panel) were expressed at the expected size. The upper-right and lower-left panels show that Dvl2 and E6 may exist in the same protein complex. The first lane on each panel represents the resulting transfection with the empty vector as the negative control.
Supplementary Figure 3 from Prometastatic NEDD9 Regulates Individual Cell Migration via Caveolin-1–Dependent Trafficking of Integrins
Authors: Kozyulina Polina Y. , Loskutov Yuriy V. , Kozyreva Varvara K. , Rajulapati Anuradha , Ice Ryan J. , Jones Brandon C. , Pugacheva Elena N.
Published: April 2023

Supplementary Figure 3. (A). Quantification of volume of early endosomes based on 3D reconstructed confocal images of BT459-siCon, -siN2, -siN3) cells stained with EEA1 antibodies; mean volume (%) normalized to siCon+S.E.M; n=3, 10 cells/treatment; one-way ANOVA: *p<0.0004 for siCon/siN2 or /siN3 (EEA1). (B). Representative confocal images of MDA-MB-231LN-siCon, -siN2) cells stained with anti-EEA1 and anti-Integrin b1 antibodies; inserts-the enlarged areas of individual cells indicated by rectangles in the main panel; scale bar, 10Âµm; (C). WB analysis of lipid raft fractionation of MDA-MB-231 cells constitutively expressing shNEDD9 (N1, N4) with anti-b1 integrin, -transferin receptor (TrfR), -EGFR, -Ras and -caveolin-1 (CAV1) antibodies; (D). Representative confocal images of MDA-MB-231 cells expressing GFP-NEDD9 and stained with Âµ2 AP2; no colocolization found; scale bar, 10Âµm; (E). Western blot analysis of immunoprecipitated (IP) NEDD9 from shNEDD9 (N1)-MDA-MB-231LN cells with or without Nedd9 re-expression (cDNA-Nedd9), non-specific IgG -control; staining for subunits of AP2-complex part of clathrin trafficking machimery: adaptin a and g, pÂµ2 AP2; (F). WB of BT459-siCon and -siN2,-N3 cells with anti-pTyr14-CAV1, -NEDD9 and -GAPDH antibodies. (G). Flow cytometry analysis of integrin b4 surface staining in control (siCon) or siNEDD9 (N2, N3) MDA-MB-231cells treated or untreated with siCaveolin-1 (siCAV1); graphs are mean values of RFU % to siCon (assigned as 100%) +/- S.E.M; one-way ANOVA; *p<0.002 for siCon/siN2 or N3; *p for siCon/siCAV1+siN2 or N3 is not significant (ns).
Supplementary Table S1 from PARP Inhibition Induces Enrichment of DNA Repair–Proficient CD133 and CD117 Positive Ovarian Cancer Stem Cells
Authors: Bellio Chiara , DiGloria Celeste , Foster Rosemary , James Kaitlyn , Konstantinopoulos Panagiotis A. , Growdon Whitfield B. , Rueda Bo R.
Published: April 2023

Supplementary Table S1: p-values of RT-PCR analysis of PROM1 (CD133), KIT (CD117), SOX2 and POU5F1 (OCT4) genes (Supplementary Figure SC).
Supplementary Data from PARP Inhibition Induces Enrichment of DNA Repair–Proficient CD133 and CD117 Positive Ovarian Cancer Stem Cells
Authors: Bellio Chiara , DiGloria Celeste , Foster Rosemary , James Kaitlyn , Konstantinopoulos Panagiotis A. , Growdon Whitfield B. , Rueda Bo R.
Published: April 2023

Supplemental methods and supplementary figure legends
Supplementary Tables 1 - 2 from The Heterochronic microRNA let-7 Inhibits Cell Motility by Regulating the Genes in the Actin Cytoskeleton Pathway in Breast Cancer
Authors: Hu Xiaowen , Guo Jinyi , Zheng Lan , Li Chunsheng , Zheng Tim M. , Tanyi Janos L. , Liang Shun , Benedetto Chiara , Mitidieri Marco , Katsaros Dionyssios , Zhao Xia , Zhang Youcheng , Huang Qihong , Zhang Lin
Published: April 2023

PDF file - 76K, Table. S1. Real-time RT-PCR primer sequences; Table. S2. siRNA sequences.
Supplementary Figure 6 from The Heterochronic microRNA let-7 Inhibits Cell Motility by Regulating the Genes in the Actin Cytoskeleton Pathway in Breast Cancer
Authors: Hu Xiaowen , Guo Jinyi , Zheng Lan , Li Chunsheng , Zheng Tim M. , Tanyi Janos L. , Liang Shun , Benedetto Chiara , Mitidieri Marco , Katsaros Dionyssios , Zhao Xia , Zhang Youcheng , Huang Qihong , Zhang Lin
Published: April 2023

PDF file - 2152K, Fig. S6. The siRNA cocktail of the let-7 target genes phenocopied the effect of the let-7b mimic on cytoskeleton dynamics in breast cancer cells.
Supplemental Figure 6 from Exploitation of Castration-Resistant Prostate Cancer Transcription Factor Dependencies by the Novel BET Inhibitor ABBV-075
Authors: Faivre Emily J. , Wilcox Denise , Lin Xiaoyu , Hessler Paul , Torrent Maricel , He Wei , Uziel Tamar , Albert Daniel H. , McDaniel Keith , Kati Warren , Shen Yu
Published: April 2023

Characterization of MDV_R cell line with acquired resistance to Enzalutamide.
Supplementary Figure 1 from The Heterochronic microRNA let-7 Inhibits Cell Motility by Regulating the Genes in the Actin Cytoskeleton Pathway in Breast Cancer
Authors: Hu Xiaowen , Guo Jinyi , Zheng Lan , Li Chunsheng , Zheng Tim M. , Tanyi Janos L. , Liang Shun , Benedetto Chiara , Mitidieri Marco , Katsaros Dionyssios , Zhao Xia , Zhang Youcheng , Huang Qihong , Zhang Lin
Published: April 2023

PDF file - 1835K, Fig. S1. Summary of the let-7b expression levels in two groups of breast cancer cell lines (invasive cell lines v.s. non/low invasive cell lines).
Supplementary Tables 1-4 from PIK3CA and p53 Mutations Promote 4NQO-Initated Head and Neck Tumor Progression and Metastasis in Mice
Authors: García-Carracedo Darío , Cai Yi , Qiu Wanglong , Saeki Kiyoshi , Friedman Richard A. , Lee Andrew , Li Yinglu , Goldberg Elizabeth M. , Stratikopoulos Elias E. , Parsons Ramon , Lu Chao , Efstratiadis Argiris , Philipone Elizabeth M. , Yoon Angela J. , Su Gloria H.
Published: April 2023

Table S1: List of antibodies used in the study Table S2. Sample size and clonality of RNA-Seq samples Table S3. Numbers of Significant Genes Table S4: Genetic and molecular analysis of the mouse primary SCC cell lines
Supplementary Table 2 from Basal-like Breast Cancer Cells Induce Phenotypic and Genomic Changes in Macrophages
Authors: Stewart Delisha A. , Yang Yinmeng , Makowski Liza , Troester Melissa A.
Published: April 2023

PDF file - 62K, Ingenuity Pathway Analysis on M1- and M2-specific gene clusters from THP-1expression responses to classical stimuli.
Supplementary Table 1 from Basal-like Breast Cancer Cells Induce Phenotypic and Genomic Changes in Macrophages
Authors: Stewart Delisha A. , Yang Yinmeng , Makowski Liza , Troester Melissa A.
Published: April 2023

PDF file - 128K, Control system-generated M1 and M2 macrophage significantly expressed genes involved in macrophage differentiation and polarization defined by 4x44k microarray analysis.
Supplementary Table 2 from Mutant IDH1 Disrupts the Mouse Subventricular Zone and Alters Brain Tumor Progression
Authors: Pirozzi Christopher J. , Carpenter Austin B. , Waitkus Matthew S. , Wang Catherine Y. , Zhu Huishan , Hansen Landon J. , Chen Lee H. , Greer Paula K. , Feng Jie , Wang Yu , Bock Cheryl B. , Fan Ping , Spasojevic Ivan , McLendon Roger E. , Bigner Darell D. , He Yiping , Yan Hai
Published: April 2023

Affymetrix GeneChip Mouse Gene 2.0ST Array used for gene expression profiling. Gene list displays those genes with more than 2-fold change when comparing IDH1LSL:R132H/WT ad-GFP transduced NSCs compared to IDH1LSL:R132H/WT ad-Cre transduced NSCs.
Supplementary Table 1 from Mutant IDH1 Disrupts the Mouse Subventricular Zone and Alters Brain Tumor Progression
Authors: Pirozzi Christopher J. , Carpenter Austin B. , Waitkus Matthew S. , Wang Catherine Y. , Zhu Huishan , Hansen Landon J. , Chen Lee H. , Greer Paula K. , Feng Jie , Wang Yu , Bock Cheryl B. , Fan Ping , Spasojevic Ivan , McLendon Roger E. , Bigner Darell D. , He Yiping , Yan Hai
Published: April 2023

Sequences of primers used for genotyping of animals and for q-RT-PCR.
Supplementary Table 1 from Hypoxia Attenuates Trastuzumab Uptake and Trastuzumab-Emtansine (T-DM1) Cytotoxicity through Redistribution of Phosphorylated Caveolin-1
Authors: Indira Chandran Vineesh , Månsson Ann-Sofie , Barbachowska Magdalena , Cerezo-Magaña Myriam , Nodin Björn , Joshi Bharat , Koppada Neelima , Saad Ola M. , Gluz Oleg , Isaksson Karolin , Borgquist Signe , Jirström Karin , Nabi Ivan Robert , Jernström Helena , Belting Mattias
Published: April 2023

Supplementary Table 1. Patient and tumor characteristics in relation to tumor-specific cytoplasmic intensity of CAV1
Supplementary Fig. 5 from Hypoxia Attenuates Trastuzumab Uptake and Trastuzumab-Emtansine (T-DM1) Cytotoxicity through Redistribution of Phosphorylated Caveolin-1
Authors: Indira Chandran Vineesh , Månsson Ann-Sofie , Barbachowska Magdalena , Cerezo-Magaña Myriam , Nodin Björn , Joshi Bharat , Koppada Neelima , Saad Ola M. , Gluz Oleg , Isaksson Karolin , Borgquist Signe , Jirström Karin , Nabi Ivan Robert , Jernström Helena , Belting Mattias
Published: April 2023

Figure S5. Flow chart of the selection process of patients.
Supplementary Fig. 3 from Hypoxia Attenuates Trastuzumab Uptake and Trastuzumab-Emtansine (T-DM1) Cytotoxicity through Redistribution of Phosphorylated Caveolin-1
Authors: Indira Chandran Vineesh , Månsson Ann-Sofie , Barbachowska Magdalena , Cerezo-Magaña Myriam , Nodin Björn , Joshi Bharat , Koppada Neelima , Saad Ola M. , Gluz Oleg , Isaksson Karolin , Borgquist Signe , Jirström Karin , Nabi Ivan Robert , Jernström Helena , Belting Mattias
Published: April 2023

S3. Cytotoxicity of T-DM1 catabolites is not altered by hypoxia. Dose response curves showing sensitivity of normoxic or hypoxic SKBR3 and BT474 cells treated with T-DM1 catabolites, DM1 (A, D), MCC-DM1 (B, E), and LMCC-DM1 (C, F) for 72 h. Normoxia (black curves) and hypoxia (red curves). Cell viability was measured by MTS assay and expressed as % cell viability of control. Data shown are from at least three independent experiments, each performed in triplicates. NR, not reached.
Supplementary Figure 5 from SUZ12 Promotes Human Epithelial Ovarian Cancer by Suppressing Apoptosis via Silencing HRK
Authors: Li Hua , Cai Qi , Wu Hong , Vathipadiekal Vinod , Dobbin Zachary C. , Li Tianyu , Hua Xiang , Landen Charles N. , Birrer Michael J. , Sánchez-Beato Margarita , Zhang Rugang
Published: April 2023

PDF file - 548K, Knockdown of HRK mRNA by siRNA to the human HRK gene (siHRK)
Supplementary Table 3 from Expression of G Protein-Coupled Receptor 19 in Human Lung Cancer Cells Is Triggered by Entry into S-Phase and Supports G2–M Cell-Cycle Progression
Authors: Kastner Stefan , Voss Tilman , Keuerleber Simon , Glöckel Christina , Freissmuth Michael , Sommergruber Wolfgang
Published: April 2023

PDF file - 253K, Detailed patient information for NSCLC, SCLC and normal lung RNA samples from Origene Technologies
Supplementary Table 1 from Expression of G Protein-Coupled Receptor 19 in Human Lung Cancer Cells Is Triggered by Entry into S-Phase and Supports G2–M Cell-Cycle Progression
Authors: Kastner Stefan , Voss Tilman , Keuerleber Simon , Glöckel Christina , Freissmuth Michael , Sommergruber Wolfgang
Published: April 2023

PDF file - 51K, Detailed cell line information for human NSCLC, SCLC, and normal lung cell lines and HEK-293 cells
Supplementary Figures Legends 1-8 from Inhibition of the Nedd8 System Sensitizes Cells to DNA Interstrand Cross-linking Agents
Authors: Kee Younghoon , Huang Min , Chang Sophia , Moreau Lisa A. , Park Eunmi , Smith Peter G. , D'Andrea Alan D.
Published: April 2023

PDF file - 51K
Supplementary text from Exosomal Annexin II Promotes Angiogenesis and Breast Cancer Metastasis
Authors: Maji Sayantan , Chaudhary Pankaj , Akopova Irina , Nguyen Phung M. , Hare Richard J. , Gryczynski Ignacy , Vishwanatha Jamboor K.
Published: April 2023

Supplementary text
Supplementary Figure 8 from Inhibition of the Nedd8 System Sensitizes Cells to DNA Interstrand Cross-linking Agents
Authors: Kee Younghoon , Huang Min , Chang Sophia , Moreau Lisa A. , Park Eunmi , Smith Peter G. , D'Andrea Alan D.
Published: April 2023

PDF file - 288K
Supplementary Methods from KRASG12D- and BRAFV600E-Induced Transformation of Murine Pancreatic Epithelial Cells Requires MEK/ERK-Stimulated IGF1R Signaling
Authors: Appleman Victoria A. , Ahronian Leanne G. , Cai JiuFeng , Klimstra David S. , Lewis Brian C.
Published: April 2023

PDF file - 73K, Methods and reagents excluded from text due to space constraints
Supplemental figure 4 from Sensitizing B- and T- cell Lymphoma Cells to Paclitaxel/Abraxane–Induced Death by AS101 via Inhibition of the VLA-4–IL10–Survivin Axis
Authors: Danoch Hila , Kalechman Yona , Albeck Michael , Longo Dan L. , Sredni Benjamin
Published: April 2023

Supplemental Figure S4: Chemoresistance of NHL cells induced by BM Stromal cells is abrogated by AS101.
Supplementary Figure Legend from Multiple Functions of Sushi Domain Containing 2 (SUSD2) in Breast Tumorigenesis
Authors: Watson Allison P. , Evans Rick L. , Egland Kristi A.
Published: April 2023

PDF file - 58K
Supplementary Figures 1-5 from Targeting Opsin4/Melanopsin with a Novel Small Molecule Suppresses PKC/RAF/MEK/ERK Signaling and Inhibits Lung Adenocarcinoma Progression
Authors: Wang Qiushi , Zhang Tianshun , Chang Xiaoyu , Wang Keke , Lee Mee-Hyun , Ma Wei-Ya , Liu Kangdong , Dong Zigang
Published: April 2023

Figure S1. OPN4 expression is upregulated in human lung adenocarcinoma. Figure S2. Knockdown of OPN4 inhibits cells growth and induces cells apoptosis in H441 and A549 cells. Figure S3. Loss OPN4 suppresses urethane-induced lung carcinogenesis. Figure S4. Effects of OPN4 antagonist AE 51310 on normal lung cells growth. Figure S5. OPN4 antagonist inhibits tumor growth in lung PDX mouse model.
Supplementary Figure 1 from Src Family Kinases Are Regulated in Multiple Myeloma Cells by Phosphatase of Regenerating Liver-3
Authors: Abdollahi Pegah , Vandsemb Esten N. , Hjort Magnus A. , Misund Kristine , Holien Toril , Sponaas Anne-Marit , Rø Torstein B. , Slørdahl Tobias S. , Børset Magne
Published: April 2023

Confirmation of transduction of INA-6 cells. PRL-3 overexpression was confirmed by A) qRT PCR and B) Immunoblotting for PRL-3. GAPDH was used as loading control. PRL-3 down regulation was confirmed by C) qRT PCR. Expression level is presented as fold change relative to Mock INA-6 and samples were normalized to their GAPDH control. Error bars represent +/- SD of triplicate measurements.
Supplementary Table 1 from Alkylation Sensitivity Screens Reveal a Conserved Cross-species Functionome
Authors: Svilar David , Dyavaiah Madhu , Brown Ashley R. , Tang Jiang-bo , Li Jianfeng , McDonald Peter R. , Shun Tong Ying , Braganza Andrea , Wang Xiao-hong , Maniar Salony , Croix Claudette M. St , Lazo John S. , Pollack Ian F. , Begley Thomas J. , Sobol Robert W.
Published: April 2023

PDF file - 55K, Significantly conserved biological processes as determined by cross-species Functionome Analysis
Supplementary Dataset 6 from Alkylation Sensitivity Screens Reveal a Conserved Cross-species Functionome
Authors: Svilar David , Dyavaiah Madhu , Brown Ashley R. , Tang Jiang-bo , Li Jianfeng , McDonald Peter R. , Shun Tong Ying , Braganza Andrea , Wang Xiao-hong , Maniar Salony , Croix Claudette M. St , Lazo John S. , Pollack Ian F. , Begley Thomas J. , Sobol Robert W.
Published: April 2023

XLS file - 28K, Enriched biological processes and associated genes as determined by Princeton GO Term Finder
Supplementary Dataset 3 from Alkylation Sensitivity Screens Reveal a Conserved Cross-species Functionome
Authors: Svilar David , Dyavaiah Madhu , Brown Ashley R. , Tang Jiang-bo , Li Jianfeng , McDonald Peter R. , Shun Tong Ying , Braganza Andrea , Wang Xiao-hong , Maniar Salony , Croix Claudette M. St , Lazo John S. , Pollack Ian F. , Begley Thomas J. , Sobol Robert W.
Published: April 2023

XLS file - 609K, Third group of genes from the siRNA screen analyzed for gene enrichment using selection criteria of a p-value less than 0.05 and a viability ratio in the lowest 7.5%
Supplementary Table 6 from Identification of Genomic Targets of Transcription Factor Aebp1 and its role in Survival of Glioma Cells
Authors: Ladha Jayashree , Sinha Swati , Bhat Vasudeva , Donakonda Sainitin , Rao Satyanarayana M.R.
Published: April 2023

XLS file - 52K, List of genes related to Apoptosis, Cell Cycle, Cell Proliferation and Cell Differentiation deferentially regulated upon AEBP1 down regulation
Supplementary Table 1 from WNT7A Regulates Tumor Growth and Progression in Ovarian Cancer through the WNT/β-Catenin Pathway
Authors: Yoshioka Shin , King Mandy L. , Ran Sophia , Okuda Hiroshi , MacLean James A. , McAsey Mary E. , Sugino Norihiro , Brard Laurent , Watabe Kounosuke , Hayashi Kanako
Published: April 2023

PDF file - 4MB
Supplementary Figure 3 from WNT7A Regulates Tumor Growth and Progression in Ovarian Cancer through the WNT/β-Catenin Pathway
Authors: Yoshioka Shin , King Mandy L. , Ran Sophia , Okuda Hiroshi , MacLean James A. , McAsey Mary E. , Sugino Norihiro , Brard Laurent , Watabe Kounosuke , Hayashi Kanako
Published: April 2023

PDF file - 3.1K
Supplementary Figure 2 from WNT7A Regulates Tumor Growth and Progression in Ovarian Cancer through the WNT/β-Catenin Pathway
Authors: Yoshioka Shin , King Mandy L. , Ran Sophia , Okuda Hiroshi , MacLean James A. , McAsey Mary E. , Sugino Norihiro , Brard Laurent , Watabe Kounosuke , Hayashi Kanako
Published: April 2023

PDF file - 2.5MB
Supplementary Table 2 from The NSD2 p.E1099K Mutation Is Enriched at Relapse and Confers Drug Resistance in a Cell Context–Dependent Manner in Pediatric Acute Lymphoblastic Leukemia
Authors: Pierro Joanna , Saliba Jason , Narang Sonali , Sethia Gunjan , Saint Fleur-Lominy Shella , Chowdhury Ashfiyah , Qualls Anita , Fay Hannah , Kilberg Harrison L. , Moriyama Takaya , Fuller Tori J. , Teachey David T. , Schmiegelow Kjeld , Yang Jun J. , Loh Mignon L. , Brown Patrick A. , Zhang Jinghui , Ma Xiaotu , Tsirigos Aristotelis , Evensen Nikki A. , Carroll William L.
Published: April 2023

PAWWLL PDX Mutation List
Supplementary Methods and Table S1 from Mesenchymal and MAPK Expression Signatures Associate with Telomerase Promoter Mutations in Multiple Cancers
Authors: Stern Josh Lewis , Hibshman Grace , Hu Kevin , Ferrara Sarah E. , Costello James C. , Kim William , Tamayo Pablo , Cech Thomas R. , Huang Franklin W.
Published: April 2023

Table S1. TERTp mutations included in this study
Supplementary Information from The NSD2 p.E1099K Mutation Is Enriched at Relapse and Confers Drug Resistance in a Cell Context–Dependent Manner in Pediatric Acute Lymphoblastic Leukemia
Authors: Pierro Joanna , Saliba Jason , Narang Sonali , Sethia Gunjan , Saint Fleur-Lominy Shella , Chowdhury Ashfiyah , Qualls Anita , Fay Hannah , Kilberg Harrison L. , Moriyama Takaya , Fuller Tori J. , Teachey David T. , Schmiegelow Kjeld , Yang Jun J. , Loh Mignon L. , Brown Patrick A. , Zhang Jinghui , Ma Xiaotu , Tsirigos Aristotelis , Evensen Nikki A. , Carroll William L.
Published: April 2023

Supplementary materials and methods and supplementary figure legends.
Figure S8 from Drug Targeting the Actin Cytoskeleton Potentiates the Cytotoxicity of Low Dose Vincristine by Abrogating Actin-Mediated Repair of Spindle Defects
Authors: Wang Yao , Stear Jeffrey H. , Swain Ashleigh , Xu Xing , Bryce Nicole S. , Carnell Michael , Alieva Irina B. , Dugina Vera B. , Cripe Timothy P. , Stehn Justine , Hardeman Edna C. , Gunning Peter W.
Published: April 2023

The measurement of spindle length and cell vertical length.
Supplementary Figure 4 from Genetic and Epigenetic Inactivation of Extracellular Superoxide Dismutase Promotes an Invasive Phenotype in Human Lung Cancer by Disrupting ECM Homeostasis
Authors: Teoh-Fitzgerald Melissa L.T. , Fitzgerald Matthew P. , Jensen Taylor J. , Futscher Bernard W. , Domann Frederick E.
Published: April 2023

PDF file - 404KB
Supplemental Tables from MUC1-C Induces the LIN28B→LET-7→HMGA2 Axis to Regulate Self-Renewal in NSCLC
Authors: Alam Maroof , Ahmad Rehan , Rajabi Hasan , Kufe Donald
Published: April 2023

Supplemental Tables
Supplementary Figure 1 from Genetic and Epigenetic Inactivation of Extracellular Superoxide Dismutase Promotes an Invasive Phenotype in Human Lung Cancer by Disrupting ECM Homeostasis
Authors: Teoh-Fitzgerald Melissa L.T. , Fitzgerald Matthew P. , Jensen Taylor J. , Futscher Bernard W. , Domann Frederick E.
Published: April 2023

PDF file - 289KB
Supplementary Figures 1-7, Table 1 from Differential Tumorigenic Potential and Matriptase Activation between PDGF B versus PDGF D in Prostate Cancer
Authors: Najy Abdo J. , Won Joshua J. , Movilla Lisa S. , Kim Hyeong-Reh C.
Published: April 2023

PDF file - 1.7MB, S1 PDGF D is a more effective inducer of prostate epithelial cell migration and invasion than PDGF B. S2 Beta-PDGFR transactivation in NIH3T3 cells using conditioned media derived from PDGF B and PDGF D epithelial cells. S3 PDGFR expression in prostate epithelial cells. S4 Downregulation of Beta-PDGFR attenuates PDGF D-induced prostate epithelial cell migration. S5 Inhibition of JNK abrogates PDGF D-induced prostate epithelial cell motility. S6 The PDGF D/Beta-PDGFR signaling axis supports matriptase activation in prostate epithelial cells. S7 Downregulation of matriptase attenuates PDGF D-mediated cell migration.
Supplementary Figure and Table Legends from Differential Tumorigenic Potential and Matriptase Activation between PDGF B versus PDGF D in Prostate Cancer
Authors: Najy Abdo J. , Won Joshua J. , Movilla Lisa S. , Kim Hyeong-Reh C.
Published: April 2023

PDF file - 93K
Supplementary Table 2 from PRMT6 Promotes Lung Tumor Progression via the Alternate Activation of Tumor-Associated Macrophages
Authors: Avasarala Sreedevi , Wu Pei-Ying , Khan Samia Q. , Yanlin Su , Van Scoyk Michelle , Bao Jianqiang , Di Lorenzo Alessandra , David Odile , Bedford Mark T. , Gupta Vineet , Winn Robert A. , Bikkavilli Rama Kamesh
Published: April 2023

List of primers
Table S1 from Mesothelin Enhances Tumor Vascularity in Newly Forming Pancreatic Peritoneal Metastases
Authors: Avula Leela Rani , Rudloff Michael , El-Behaedi Salma , Arons Danielle , Albalawy Rakan , Chen Xiongfong , Zhang Xianyu , Alewine Christine
Published: April 2023

Primers used for qPCR towards validating transcriptional profiles.
Supplementary Figure 4 from Deletion or Epigenetic Silencing of AJAP1 on 1p36 in Glioblastoma
Authors: Lin Ningjing , Di Chunhui , Bortoff Kathy , Fu Jinrong , Truszkowski Peter , Killela Patrick , Duncan Chris , McLendon Roger , Bigner Darell , Gregory Simon , Adamson David Cory
Published: April 2023

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Figure S3 from Mesothelin Enhances Tumor Vascularity in Newly Forming Pancreatic Peritoneal Metastases
Authors: Avula Leela Rani , Rudloff Michael , El-Behaedi Salma , Arons Danielle , Albalawy Rakan , Chen Xiongfong , Zhang Xianyu , Alewine Christine
Published: April 2023

Successful reconstitution of WT or Y318A MSLN expression in KLM1 KO#2 and over-expression in MIA PaCa-2.
Supplementary Figure 4 from Inhibition of DNA-Dependent Protein Kinase Induces Accelerated Senescence in Irradiated Human Cancer Cells
Authors: Azad Arun , Jackson Susan , Cullinane Carleen , Natoli Anthony , Neilsen Paul M. , Callen David F. , Maira Sauveur-Michel , Hackl Wolfgang , McArthur Grant A. , Solomon Benjamin
Published: April 2023

PDF file - 2MB, IL-8, MIF and PAI-1 levels in supernatant from H460 and A549 cells after 96 hours treatment. Supernatant volumes were normalized to cell number and analyzed using cytokine antibody arrays.
Supplementary Figure 3 from Inhibition of DNA-Dependent Protein Kinase Induces Accelerated Senescence in Irradiated Human Cancer Cells
Authors: Azad Arun , Jackson Susan , Cullinane Carleen , Natoli Anthony , Neilsen Paul M. , Callen David F. , Maira Sauveur-Michel , Hackl Wolfgang , McArthur Grant A. , Solomon Benjamin
Published: April 2023

PDF file - 1.8MB, BEZ235 does not induce abnormal mitoses in irradiated H460 and A549 cells. Number of abnormal mitoses at 48 hours following indicated treatment. An average of 70 cells per group was counted to determine mean +/- SEM.
Supplementary Figure 2 from Inhibition of DNA-Dependent Protein Kinase Induces Accelerated Senescence in Irradiated Human Cancer Cells
Authors: Azad Arun , Jackson Susan , Cullinane Carleen , Natoli Anthony , Neilsen Paul M. , Callen David F. , Maira Sauveur-Michel , Hackl Wolfgang , McArthur Grant A. , Solomon Benjamin
Published: April 2023

PDF file - 7.4MB, TUNEL assay in H460 and A549 cells after 48 hours treatment. H460 cells irradiated with 20 Gy were used as a positive control.
Supplementary Data from Epidermal Growth Factor Receptor–Mediated Membrane Type 1 Matrix Metalloproteinase Endocytosis Regulates the Transition between Invasive versus Expansive Growth of Ovarian Carcinoma Cells in Three-Dimensional Collagen
Authors: Moss Natalie M. , Liu Yueying , Johnson Jeff J. , Debiase Philip , Jones Jonathan , Hudson Laurie G. , Munshi Hidayatullah G. , Stack M. Sharon
Published: April 2023

Supplementary Data from Epidermal Growth Factor Receptor–Mediated Membrane Type 1 Matrix Metalloproteinase Endocytosis Regulates the Transition between Invasive versus Expansive Growth of Ovarian Carcinoma Cells in Three-Dimensional Collagen
Supplementary Figures S1-S5 from Glioma Regression In vitro and In vivo by a Suicide Combined Treatment
Authors: García-Escudero Vega , Gargini Ricardo , Izquierdo Marta
Published: April 2023

Supplementary Figures S1-S5 from Glioma Regression In vitro and In vivo by a Suicide Combined Treatment
Supplementary Data from Targeting Epidermal Growth Factor Receptor–Associated Signaling Pathways in Non–Small Cell Lung Cancer Cells: Implication in Radiation Response
Authors: Choi Eun Jung , Ryu Yun Kyeong , Kim So Yeon , Wu Hong Gyun , Kim Jae Sung , Kim Il Han , Kim In Ah
Published: April 2023

Supplementary Figures S1-S2.
Supplementary Figure 1 from Osteopontin Stimulates Preneoplastic Cellular Proliferation Through Activation of the MAPK Pathway
Authors: Luo Xianmin , Ruhland Megan K. , Pazolli Ermira , Lind Anne C. , Stewart Sheila A.
Published: April 2023

PDF file - 109K
Supplementary Figures S1-S2 from Estradiol-Induced Regression in T47D:A18/PKCα Tumors Requires the Estrogen Receptor and Interaction with the Extracellular Matrix
Authors: Zhang Yiyun , Zhao Huiping , Asztalos Szilard , Chisamore Michael , Sitabkhan Yasmin , Tonetti Debra A.
Published: April 2023

Supplementary Figures S1-S2 from Estradiol-Induced Regression in T47D:A18/PKCα Tumors Requires the Estrogen Receptor and Interaction with the Extracellular Matrix
Supplementary Table 2 from A Sensitized RNA Interference Screen Identifies a Novel Role for the PI3K p110γ Isoform in Medulloblastoma Cell Proliferation and Chemoresistance
Authors: Guerreiro Ana S. , Fattet Sarah , Kulesza Dorota W. , Atamer Abdullah , Elsing Alexandra N. , Shalaby Tarek , Jackson Shaun P. , Schoenwaelder Simone M. , Grotzer Michael A. , Delattre Olivier , Arcaro Alexandre
Published: April 2023

Supplementary Table 2 from A Sensitized RNA Interference Screen Identifies a Novel Role for the PI3K p110γ Isoform in Medulloblastoma Cell Proliferation and Chemoresistance
Supplementary Movie S1A from Oligodendrocyte Lineage Transcription Factor 2 Inhibits the Motility of a Human Glial Tumor Cell Line by Activating RhoA
Authors: Tabu Kouichi , Ohba Yusuke , Suzuki Tadaki , Makino Yoshinori , Kimura Taichi , Ohnishi Akiko , Sakai Mieko , Watanabe Takuya , Tanaka Shinya , Sawa Hirofumi
Published: April 2023

Supplementary Movie S1A from Oligodendrocyte Lineage Transcription Factor 2 Inhibits the Motility of a Human Glial Tumor Cell Line by Activating RhoA
Supplementary Fig 4 from Heme Sequestration Effectively Suppresses the Development and Progression of Both Lung Adenocarcinoma and Squamous Cell Carcinoma
Authors: Dey Sanchareeka , Ashrafi Adnin , Vidal Chantal , Jain Nivesh , Kalainayakan Sarada Preeta , Ghosh Poorva , Alemi Parinaz Sadat , Salamat Narges , Konduri Purna Chaitanya , Kim Jung-whan , Zhang Li
Published: April 2023

Supplementary Figure 4. The effect of HeSP2 treatment on the levels of representative OXPHOS complex subunits. A, Representative IHC images of lung tissue sections from KLLuc mice showing the levels of COX5B. B, Representative IHC images of lung tissue sections from KLLuc mice showing the levels of COX7B. C, Representative IHC images of lung tissue sections from KLLuc mice showing the levels of ATP5F1A. D, Representative IHC images of lung tissue sections from KLLuc mice showing the levels of CYCS. Shown are montage and 10X images of lung tissue sections stained with DAPI (row 1) and antibodies against the indicated protein (row 2). The light green lines in DAPI montages outline the tumors in the lung. The white rectangles denote the regions shown in 10X images. Scale bar, montage, 1mm; 10X, 100Âµm. E, Graph showing quantified levels of COX5B correlating with A. F, Graph showing quantified levels of COX7B correlating with B. G, Graph showing quantified levels of ATP5F1A correlating with C. H, Graph showing quantified levels of CYCS correlating with D. For statistical analysis, the levels in HeSP2-treated tumors were compared with the levels in control tumors with a Welch two-sample t test. **, P < 0.005.
Video 2 from Tumor-Resident Stromal Cells Promote Breast Cancer Invasion through Regulation of the Basal Phenotype
Authors: Hanley Christopher J. , Henriet Elodie , Sirka Orit Katarina , Thomas Gareth J. , Ewald Andrew J.
Published: April 2023

Stromal cells remodel collagen matrix.
Supplementary Table 2 from Tumor-Resident Stromal Cells Promote Breast Cancer Invasion through Regulation of the Basal Phenotype
Authors: Hanley Christopher J. , Henriet Elodie , Sirka Orit Katarina , Thomas Gareth J. , Ewald Andrew J.
Published: April 2023

Correlation of individual genes from the ECM module with the Krt14 gene signature
Supplementary Table S2 from Meta-Analysis and Systematic Review of the Genomics of Mucosal Melanoma
Authors: Broit Natasa , Johansson Peter A. , Rodgers Chloe B. , Walpole Sebastian T. , Newell Felicity , Hayward Nicholas K. , Pritchard Antonia L.
Published: April 2023

Genomic Data and Analysis
Supplementary Figures 1- 7 from ILT3 (LILRB4) Promotes the Immunosuppressive Function of Tumor-Educated Human Monocytic Myeloid-Derived Suppressor Cells
Authors: Singh Latika , Muise Eric S. , Bhattacharya Anannya , Grein Jeff , Javaid Sarah , Stivers Peter , Zhang Jun , Qu Yujie , Joyce-Shaikh Barbara , Loboda Andrey , Zhang Chunsheng , Meehl Michael , Chiang Derek Y. , Ranganath Sheila H. , Rosenzweig Michael , Brandish Philip E.
Published: April 2023

Figure S1A-C - Dot plots and histograms from flow cytometry analysis of SK-MEL-5-educated M-MDSCs and PBMCs cultured in medium alone.

Figure S1D - FACS result of cell surface staining of cytokine-induced M-MDSCs and PBMCs cultured in medium alone.

Figure S1E - Cell surface staining of monocytes cultured in the presence of M-CSF and IL4 and SK-MEL-5-educated M-MDSCs by staining with HLA-DR.

Figure S2 A-B - ILT3 is highly expressed on CD45+CD33+CD14+ myeloid cells in SK-MEL-5 tumor-infiltrating lymphocytes.

Figure S3 - Single-cell RNAseq (scRNAseq) of human immune cells in non-small cell lung cancer (NSCLC) public dataset.

Figure S4 - Association of LILRB4 expression with deconvoluted cell fractions for human tumor types in the TCGA database.

Figure S5 - Suppression of autologous CD8+ T cell proliferation by cytokine-induced M-MDSCs.

Figure S6 - CD33+ cells from PBMCs cultured in medium alone are not suppressive.

Figure S7 - Differentially expressed genes (DEG) between SK-MEL-5 educated M-MDSCs and monocytes.
Supplementary Table 1 from Loss of 9p21 Regulatory Hub Promotes Kidney Cancer Progression by Upregulating HOXB13
Authors: Baietti Maria Francesca , Zhao Peihua , Crowther Jonathan , Sewduth Raj Nayan , De Troyer Linde , Debiec-Rychter Maria , Sablina Anna A.
Published: April 2023

Primers, shQNA, viewpoints, gRNA
Supplementary Data from Deregulation of AKT–mTOR Signaling Contributes to Chemoradiation Resistance in Lung Squamous Cell Carcinoma
Authors: Shen Changxian , Shyu Duan-Liang , Xu Min , Yang Linlin , Webb Amy , Duan Wenrui , Williams Terence M.
Published: April 2023

Supplementary Data from Deregulation of AKT–mTOR Signaling Contributes to Chemoradiation Resistance in Lung Squamous Cell Carcinoma
Supplementary Data from Blocking PI3K p110β Attenuates Development of PTEN-Deficient Castration-Resistant Prostate Cancer
Authors: Gao Xueliang , Wang Yubao , Ribeiro Caroline F. , Manokaran Cherubin , Chang Hyeyoun , Von Thanh , Rodrigues Silvia , Cizmecioglu Onur , Jia Shidong , Korpal Manav , Korn Joshua M. , Wang Zhigang , Schmit Fabienne , Jiang Lan , Pagliarini Raymond , Yang Yi , Sethi Isha , Signoretti Sabina , Yuan Guo-Cheng , Loda Massimo , Zhao Jean J. , Roberts Thomas M.
Published: April 2023

Supplementary Data from Blocking PI3K p110β Attenuates Development of PTEN-Deficient Castration-Resistant Prostate Cancer
Supplementary Tables 1-12, Supplementary Figures 1-2 from The Prostate Stromal Transcriptome in Aggressive and Lethal Prostate Cancer
Authors: Ma Chaoran , Zhou Yinglu , Fanelli Giuseppe Nicolò , Stopsack Konrad H. , Fiorentino Michelangelo , Zadra Giorgia , Mucci Lorelei A. , Loda Massimo , Tyekucheva Svitlana , Penney Kathryn L.
Published: April 2023

Supplementary Table 1. Differentially expressed genes between tumor- and benign-adjacent stroma
Supplementary Table 2. Differentially enriched pathways between tumor- and benign-adjacent stroma
Supplementary Table 3. Differentially expressed genes between high- and low-Gleason score in tumor-adjacent stroma
Supplementary Table 4. Differentially expressed genes between high- and low-Gleason score in benign-adjacent stroma
Supplementary Table 5. Differentially enriched pathways between high- and low-Gleason score in tumor-adjacent stroma
Supplementary Table 6. Differentially enriched pathways between high- and low-Gleason score in benign-adjacent stroma
Supplementary Table 7. Differentially expressed genes between cribriform and non-cribriform patterns
Supplementary Table 8. Differentially enriched pathways between cribriform and non-cribriform patterns
Supplementary Table 9. Differentially expressed genes between lethal and non-lethal cases in tumor-adjacent stroma
Supplementary Table 10. Differentially expressed genes between lethal and non-lethal cases in benign-adjacent stroma
Supplementary Table 11. Differentially enriched pathways between lethal and non-lethal cases in tumor-adjacent stroma
Supplementary Table 12. Differentially enriched pathways between lethal and non-lethal cases in benign-adjacent stroma
Supplementary Figure 1. Single sample gene set enrichment signature scores by Gleason score and lethal outcome in tumor-adjacent stromal samples.
Supplementary Figure 2. Correlation of log2 fold change values between the current data and the LCM data (GSE97284)
Supplementary Figure from Protein Phosphatase 2A–Dependent Mitotic hnRNPA1 Dephosphorylation and TERRA Formation Facilitate Telomere Capping
Authors: Sui Jiang-Dong , Tang Zheng , Chen Benjamin P.C. , Huang Ping , Yang Meng-Qi , Wang Nuo-Han , Yang Hao-Nan , Tu Hong-Lei , Jiang Qing-Ming , Zhang Jing , Wang Ying , Wu Yong-Zhong
Published: April 2023

Supplementary Figure from Protein Phosphatase 2A–Dependent Mitotic hnRNPA1 Dephosphorylation and TERRA Formation Facilitate Telomere Capping
Supplementary Data from Regulation of Cyclin D1 Degradation by Ubiquitin-Specific Protease 27X Is Critical for Cancer Cell Proliferation and Tumor Growth
Authors: Alam Shamshad , Zunic Amanda , Venkat Swati , Feigin Michael E. , Atanassov Boyko S.
Published: April 2023

Supplementary Data from Regulation of Cyclin D1 Degradation by Ubiquitin-Specific Protease 27X Is Critical for Cancer Cell Proliferation and Tumor Growth
Supplementary Data from Vitamin D Receptor Activation Attenuates Hippo Pathway Effectors and Cell Survival in Metastatic Neuroblastoma
Authors: Ladumor Yagnesh , Seong Bo Kyung Alex , Hallett Robin , Valencia-Sama Ivette , Adderley Teresa , Wang Yingying , Kee Lynn , Gont Alexander , Kaplan David R. , Irwin Meredith S.
Published: April 2023

Supplementary Data from Vitamin D Receptor Activation Attenuates Hippo Pathway Effectors and Cell Survival in Metastatic Neuroblastoma
Supplementary Figure from Antizyme Inhibitor 1 Regulates Matrikine Expression and Enhances the Metastatic Potential of Aggressive Primary Prostate Cancer
Authors: Van den Broeck Thomas , Moris Lisa , Gevaert Thomas , Davicioni Elai , Boeckx Bram , Lambrechts Diether , Helsen Christine , Handle Florian , Ghesquière Bart , Soenen Stefaan , Smeets Elien , Eerlings Roy , El Kharraz Sarah , Devlies Wout , Karnes R. Jeffrey , Lotan Tamara , Van Poppel Hendrik , Joniau Steven , Claessens Frank
Published: April 2023

Supplementary Figure from Antizyme Inhibitor 1 Regulates Matrikine Expression and Enhances the Metastatic Potential of Aggressive Primary Prostate Cancer
Supplementary Figure Legends from Curcumin Suppresses Proliferation of Colon Cancer Cells by Targeting CDK2
Authors: Lim Tae-Gyu , Lee Sung-Young , Huang Zunnan , Lim Do Young , Chen Hanyong , Jung Sung Keun , Bode Ann M. , Lee Ki Won , Dong Zigang
Published: April 2023

PDF file - 178KB
Supplementary Figure from Genome-Wide Catalogue of Chromosomal Aberrations in Barrett's Esophagus and Esophageal Adenocarcinoma: A High-Density Single Nucleotide Polymorphism Array Analysis
Authors: Gu Jian , Ajani Jaffer A. , Hawk Ernest T. , Ye Yuanqing , Lee Jeffrey H. , Bhutani Manoop S. , Hofstetter Wayne L. , Swisher Stephen G. , Wang Kenneth K. , Wu Xifeng
Published: April 2023

Supplementary Figure from Genome-Wide Catalogue of Chromosomal Aberrations in Barrett's Esophagus and Esophageal Adenocarcinoma: A High-Density Single Nucleotide Polymorphism Array Analysis
Related Article from Physical Activity and Gastric Cancer: So What? An Epidemiologist's Confession
Authors: Byers Tim
Published: April 2023

Related Article from Physical Activity and Gastric Cancer: So What? An Epidemiologist's Confession
Supplementary Figures 1-7, Tables 1-7 from The Histone Demethylase JMJD2B Plays an Essential Role in Human Carcinogenesis through Positive Regulation of Cyclin-Dependent Kinase 6
Authors: Toyokawa Gouji , Cho Hyun-Soo , Iwai Yukiko , Yoshimatsu Masanori , Takawa Masashi , Hayami Shinya , Maejima Kazuhiro , Shimizu Noriaki , Tanaka Hirotoshi , Tsunoda Tatsuhiko , Field Helen I. , Kelly John D. , Neal David E. , Ponder Bruce A.J. , Maehara Yoshihiko , Nakamura Yusuke , Hamamoto Ryuji
Published: April 2023

PDF file - 491K
Supplementary Table 1 from Ultrasensitive Detection of Unknown Colon Cancer-Initiating Mutations Using the Example of the Adenomatous Polyposis Coli Gene
Authors: Gerecke Christian , Mascher Conny , Gottschalk Uwe , Kleuser Burkhard , Scholtka Bettina
Published: April 2023

PDF - 67K, LNA blocker sequences and reaction conditions for use in Wild-type Blocking (WTB) PCR of selected APC and KRAS segments.
Supplementary Table 1 from A Derivative of Chrysin Suppresses Two-Stage Skin Carcinogenesis by Inhibiting Mitogen- and Stress-Activated Kinase 1
Authors: Liu Haidan , Hwang Joonsung , Li Wei , Choi Tae Woong , Liu Kangdong , Huang Zunnan , Jang Jae-Hyuk , Thimmegowda N.R. , Lee Ki Won , Ryoo In-Ja , Ahn Jong-Seog , Bode Ann M. , Zhou Xinmin , Yang Yifeng , Erikson Raymond L. , Kim Bo-Yeon , Dong Zigang
Published: April 2023

PDF file - 87K, Broad panel kinase selectivity of compound 69407.
Supplementary Table 5 from Aberrant Methylation of RASGRF1 Is Associated with an Epigenetic Field Defect and Increased Risk of Gastric Cancer
Authors: Takamaru Hiroyuki , Yamamoto Eiichiro , Suzuki Hiromu , Nojima Masanori , Maruyama Reo , Yamano Hiro-o , Yoshikawa Kenjiro , Kimura Tomoaki , Harada Taku , Ashida Masami , Suzuki Ryo , Yamamoto Hiroyuki , Kai Masahiro , Tokino Takashi , Sugai Tamotsu , Imai Kohzoh , Toyota Minoru , Shinomura Yasuhisa
Published: April 2023

XLS file - 33K, Correlation between RASGRF1 methylation and clinicopathological features in GC
Supplementary Table 2 from Aberrant Methylation of RASGRF1 Is Associated with an Epigenetic Field Defect and Increased Risk of Gastric Cancer
Authors: Takamaru Hiroyuki , Yamamoto Eiichiro , Suzuki Hiromu , Nojima Masanori , Maruyama Reo , Yamano Hiro-o , Yoshikawa Kenjiro , Kimura Tomoaki , Harada Taku , Ashida Masami , Suzuki Ryo , Yamamoto Hiroyuki , Kai Masahiro , Tokino Takashi , Sugai Tamotsu , Imai Kohzoh , Toyota Minoru , Shinomura Yasuhisa
Published: April 2023

XLS file - 154K, Genes hypermethylated in background gastric mucosae from patients with intestinal type GC
Supplementary Table 1 from Aberrant Methylation of RASGRF1 Is Associated with an Epigenetic Field Defect and Increased Risk of Gastric Cancer
Authors: Takamaru Hiroyuki , Yamamoto Eiichiro , Suzuki Hiromu , Nojima Masanori , Maruyama Reo , Yamano Hiro-o , Yoshikawa Kenjiro , Kimura Tomoaki , Harada Taku , Ashida Masami , Suzuki Ryo , Yamamoto Hiroyuki , Kai Masahiro , Tokino Takashi , Sugai Tamotsu , Imai Kohzoh , Toyota Minoru , Shinomura Yasuhisa
Published: April 2023

PDF file - 5K, Primer sequences used in this study
Supplementary Figure 6 from Dietary Folate Deficiency Blocks Prostate Cancer Progression in the TRAMP Model
Authors: Bistulfi Gaia , Foster Barbara A. , Karasik Ellen , Gillard Bryan , Miecznikowski Jeff , Dhiman Vineet K. , Smiraglia Dominic J.
Published: April 2023

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Perspectives on this Article from Vaccine against MUC1 Antigen Expressed in Inflammatory Bowel Disease and Cancer Lessens Colonic Inflammation and Prevents Progression to Colitis-Associated Colon Cancer
Authors: Beatty Pamela L. , Narayanan Sowmya , Gariépy Jean , Ranganathan Sarangarajan , Finn Olivera J.
Published: April 2023

Perspectives on this Article from Vaccine against MUC1 Antigen Expressed in Inflammatory Bowel Disease and Cancer Lessens Colonic Inflammation and Prevents Progression to Colitis-Associated Colon Cancer
Supplementary Figure Legends 1-3 from Telomere Shortening Alters the Kinetics of the DNA Damage Response after Ionizing Radiation in Human Cells
Authors: Drissi Rachid , Wu Jing , Hu Yafang , Bockhold Carol , Dome Jeffrey S.
Published: April 2023

PDF file - 89K
Supplementary Table 1 from Dietary Fish Oil Promotes Colonic Apoptosis and Mitochondrial Proton Leak in Oxidatively Stressed Mice
Authors: Fan Yang-Yi , Ran Qitao , Toyokuni Shinya , Okazaki Yasumasa , Callaway Evelyn S. , Lupton Joanne R. , Chapkin Robert S.
Published: April 2023

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Supplementary Table 1 from Risk Modification of Colorectal Adenoma by CYP7A1 Polymorphisms and the Role of Bile Acid Metabolism in Carcinogenesis
Authors: Wertheim Betsy C. , Smith Jeffrey W. , Fang Changming , Alberts David S. , Lance Peter , Thompson Patricia A.
Published: April 2023

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Commentaries on this Article from A Novel Combinatorial Nanotechnology-Based Oral Chemopreventive Regimen Demonstrates Significant Suppression of Pancreatic Cancer Neoplastic Lesions
Authors: Grandhi B. Karthik , Thakkar Arvind , Wang Jeffrey , Prabhu Sunil
Published: April 2023

Commentaries on this Article from A Novel Combinatorial Nanotechnology-Based Oral Chemopreventive Regimen Demonstrates Significant Suppression of Pancreatic Cancer Neoplastic Lesions
Supplementary Tables 1-4, Figure 1 from Lung Cancer Risk Prediction to Select Smokers for Screening CT—a Model Based on the Italian COSMOS Trial
Authors: Maisonneuve Patrick , Bagnardi Vincenzo , Bellomi Massimo , Spaggiari Lorenzo , Pelosi Giuseppe , Rampinelli Cristiano , Bertolotti Raffaella , Rotmensz Nicole , Field John K. , DeCensi Andrea , Veronesi Giulia
Published: April 2023

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Supplementary Table S3 from Carcinogen-Induced Skin Tumor Development Requires Leukocytic Expression of the Transcription Factor Runx3
Authors: Bauer Omri , Hantisteanu Shay , Lotem Joseph , Groner Yoram
Published: April 2023

Proteome Profiler Array - analyzed cytokines/chemokines. Colorimetric dot-blot assay profiles of protein level lists the relative levels of 40 murine cytokines/chemokines.
Supplementary table S1 from Epigenetic DNA Methylation of Antioxidative Stress Regulator NRF2 in Human Prostate Cancer
Authors: Khor Tin Oo , Fuentes Francisco , Shu Limin , Paredes-Gonzalez Ximena , Yang Anne Yuqing , Liu Yue , Smiraglia Dominic J. , Yegnasubramanian Srinivasan , Nelson William G. , Kong Ah-Ng Tony
Published: April 2023

Supplementary table S1. Supplementary table S1Primers used for MAQMA, BGS, qPCR and ChIP assay.
Supplementary figure S1 from Epigenetic DNA Methylation of Antioxidative Stress Regulator NRF2 in Human Prostate Cancer
Authors: Khor Tin Oo , Fuentes Francisco , Shu Limin , Paredes-Gonzalez Ximena , Yang Anne Yuqing , Liu Yue , Smiraglia Dominic J. , Yegnasubramanian Srinivasan , Nelson William G. , Kong Ah-Ng Tony
Published: April 2023

Supplementary figure S1. Human NRF2 promoter sequence showing DNA methylation of specific CpG sites analyzed by MAQMA analysis as described in "Materials and Methods Section". Black highlighted regions indicate 213 specific CpG sites predicted using MethPrimer (http://www.urogene.org/methprimer/); wave underlined region indicates PCR amplicon BM-1 containing three specific hypermethylated CpG sites; double underlined region indicates exon 1, and highlighted box indicates translational start site (TSS).
Perspective on This Article from Body Mass Index and the Risk for Developing Invasive Breast Cancer among High-Risk Women in NSABP P-1 and STAR Breast Cancer Prevention Trials
Authors: Cecchini Reena S. , Costantino Joseph P. , Cauley Jane A. , Cronin Walter M. , Wickerham D. Lawrence , Land Stephanie R. , Weissfeld Joel L. , Wolmark Norman
Published: April 2023

Perspective on This Article from Body Mass Index and the Risk for Developing Invasive Breast Cancer among High-Risk Women in NSABP P-1 and STAR Breast Cancer Prevention Trials