bluuebunny/crossref_metadata_2025 huggingface dataset:
Supplementary Tables 3-21 from Analysis of the Mechanisms Mediating Tumor-Specific Changes in Gene Expression in Human Liver Tumors
Authors: Acevedo Luis G. , Bieda Mark , Green Roland , Farnham Peggy J.
Published: March 2023

Supplementary Tables 3-21 from Analysis of the Mechanisms Mediating Tumor-Specific Changes in Gene Expression in Human Liver Tumors
Supplementary File 3 from Genome-Wide Functional Synergy between Amplified and Mutated Genes in Human Breast Cancer
Authors: Nikolsky Yuri , Sviridov Evgeny , Yao Jun , Dosymbekov Damir , Ustyansky Vadim , Kaznacheev Valery , Dezso Zoltan , Mulvey Laura , Macconaill Laura E. , Winckler Wendy , Serebryiskaya Tatiana , Nikolskaya Tatiana , Polyak Kornelia
Published: March 2023

Supplementary File 3 from Genome-Wide Functional Synergy between Amplified and Mutated Genes in Human Breast Cancer
Supplementary Figure 2 from Multipotent CD15+ Cancer Stem Cells in Patched-1–Deficient Mouse Medulloblastoma
Authors: Ward Ryan J. , Lee Lilian , Graham Kevin , Satkunendran Thevagi , Yoshikawa Koichi , Ling Erick , Harper Lauren , Austin Ryan , Nieuwenhuis Erica , Clarke Ian D. , Hui Chi-chung , Dirks Peter B.
Published: March 2023

Supplementary Figure 2 from Multipotent CD15+ Cancer Stem Cells in Patched-1–Deficient Mouse Medulloblastoma
Supplementary Figure 1 from Sprouty2 Association with B-Raf Is Regulated by Phosphorylation and Kinase Conformation
Authors: Brady Suzanne C. , Coleman Mathew L. , Munro June , Feller Stephan M. , Morrice Nicolas A. , Olson Michael F.
Published: March 2023

Supplementary Figure 1 from Sprouty2 Association with B-Raf Is Regulated by Phosphorylation and Kinase Conformation
Supplementary Figure Legends 1-2 from The Dendritic Cell–like Functions of IFN-Producing Killer Dendritic Cells Reside in the CD11b+ Subset and Are Licensed by Tumor Cells
Authors: Terme Magali , Mignot Grégoire , Ullrich Evelyn , Bonmort Mathieu , Minard-Colin Véronique , Jacquet Alexandra , Schultze Joachim L. , Kroemer Guido , Leclerc Claude , Chaput Nathalie , Zitvogel Laurence
Published: March 2023

Supplementary Figure Legends 1-2 from The Dendritic Cell–like Functions of IFN-Producing Killer Dendritic Cells Reside in the CD11b+ Subset and Are Licensed by Tumor Cells
Supplementary Figure 4 from The Vascular Endothelial Growth Factor Receptor Inhibitor PTK787/ZK222584 Inhibits Aromatase
Authors: Banerjee Susana , Zvelebil Marketa , Furet Pascal , Mueller-Vieira Ursula , Evans Dean B. , Dowsett Mitch , Martin Lesley-Ann
Published: March 2023

Supplementary Figure 4 from The Vascular Endothelial Growth Factor Receptor Inhibitor PTK787/ZK222584 Inhibits Aromatase
Supplementary Figure 1 from The Vascular Endothelial Growth Factor Receptor Inhibitor PTK787/ZK222584 Inhibits Aromatase
Authors: Banerjee Susana , Zvelebil Marketa , Furet Pascal , Mueller-Vieira Ursula , Evans Dean B. , Dowsett Mitch , Martin Lesley-Ann
Published: March 2023

Supplementary Figure 1 from The Vascular Endothelial Growth Factor Receptor Inhibitor PTK787/ZK222584 Inhibits Aromatase
Supplementary Figures 3-4 from Immunity to Murine Prostatic Tumors: Continuous Provision of T-Cell Help Prevents CD8 T-Cell Tolerance and Activates Tumor-Infiltrating Dendritic Cells
Authors: Shafer-Weaver Kimberly A. , Watkins Stephanie K. , Anderson Michael J. , Draper Lauren J. , Malyguine Anatoli , Alvord W. Gregory , Greenberg Norman M. , Hurwitz Arthur A.
Published: March 2023

Supplementary Figures 3-4 from Immunity to Murine Prostatic Tumors: Continuous Provision of T-Cell Help Prevents CD8 T-Cell Tolerance and Activates Tumor-Infiltrating Dendritic Cells
Supplementary Figures 1-2 from Immunity to Murine Prostatic Tumors: Continuous Provision of T-Cell Help Prevents CD8 T-Cell Tolerance and Activates Tumor-Infiltrating Dendritic Cells
Authors: Shafer-Weaver Kimberly A. , Watkins Stephanie K. , Anderson Michael J. , Draper Lauren J. , Malyguine Anatoli , Alvord W. Gregory , Greenberg Norman M. , Hurwitz Arthur A.
Published: March 2023

Supplementary Figures 1-2 from Immunity to Murine Prostatic Tumors: Continuous Provision of T-Cell Help Prevents CD8 T-Cell Tolerance and Activates Tumor-Infiltrating Dendritic Cells
Supplementary Figure 5 from A Novel Lung Metastasis Signature Links Wnt Signaling with Cancer Cell Self-Renewal and Epithelial-Mesenchymal Transition in Basal-like Breast Cancer
Authors: DiMeo Theresa A. , Anderson Kristen , Phadke Pushkar , Feng Chang , Perou Charles M. , Naber Steven , Kuperwasser Charlotte
Published: March 2023

Supplementary Figure 5 from A Novel Lung Metastasis Signature Links Wnt Signaling with Cancer Cell Self-Renewal and Epithelial-Mesenchymal Transition in Basal-like Breast Cancer
Supplementary Tables 1-3, Figure 1 from A Novel Type of p53 Pathway Dysfunction in Chronic Lymphocytic Leukemia Resulting from Two Interacting Single Nucleotide Polymorphisms within the p21 Gene
Authors: Johnson Gillian G. , Sherrington Paul D. , Carter Anthony , Lin Ke , Liloglou Triantafillos , Field John K. , Pettitt Andrew R.
Published: March 2023

Supplementary Tables 1-3, Figure 1 from A Novel Type of p53 Pathway Dysfunction in Chronic Lymphocytic Leukemia Resulting from Two Interacting Single Nucleotide Polymorphisms within the p21 Gene
Supplementary Figures 7-10 from Helicobacter pylori Cytotoxin-Associated Gene A Activates the Signal Transducer and Activator of Transcription 3 Pathway In vitro and In vivo
Authors: Bronte-Tinkew Dana M. , Terebiznik Mauricio , Franco Aime , Ang Michelle , Ahn Diane , Mimuro Hitomi , Sasakawa Chihiro , Ropeleski Mark J. , Peek Richard M. , Jones Nicola L.
Published: March 2023

Supplementary Figures 7-10 from Helicobacter pylori Cytotoxin-Associated Gene A Activates the Signal Transducer and Activator of Transcription 3 Pathway In vitro and In vivo
Commentary on this Article from T-Regulatory Cells Shift from a Protective Anti-Inflammatory to a Cancer-Promoting Proinflammatory Phenotype in Polyposis
Authors: Gounaris Elias , Blatner Nichole R. , Dennis Kristen , Magnusson Fay , Gurish Michael F. , Strom Terry B. , Beckhove Philipp , Gounari Fotini , Khazaie Khashayarsha
Published: March 2023

Commentary on this Article from T-Regulatory Cells Shift from a Protective Anti-Inflammatory to a Cancer-Promoting Proinflammatory Phenotype in Polyposis
Supplementary Methods and Figure Legends (Fig. S2 legend revised 8/31/09) from Multimodal Assessment of Protein Functional Deficiency Supports Pathogenicity of BRCA1 p.V1688del
Authors: De Nicolo Arcangela , Parisini Emilio , Zhong Quan , Dalla Palma Maurizia , Stoeckert Kathryn A. , Domchek Susan M. , Nathanson Katherine L. , Caligo Maria A. , Vidal Marc , Cusick Michael E. , Garber Judy E.
Published: March 2023

Supplementary Methods and Figure Legends (Fig. S2 legend revised 8/31/09) from Multimodal Assessment of Protein Functional Deficiency Supports Pathogenicity of BRCA1 p.V1688del
Supplementary Figures 1-3, Tables 1-2 from Epigenetic Loss of Mucosa-Associated Lymphoid Tissue 1 Expression in Patients with Oral Carcinomas
Authors: Chiba Tadashige , Maeda Genta , Kawashiri Shuichi , Kato Koroku , Imai Kazushi
Published: March 2023

Supplementary Figures 1-3, Tables 1-2 from Epigenetic Loss of Mucosa-Associated Lymphoid Tissue 1 Expression in Patients with Oral Carcinomas
Supplementary Figure 1 from Multimodal Assessment of Protein Functional Deficiency Supports Pathogenicity of BRCA1 p.V1688del
Authors: De Nicolo Arcangela , Parisini Emilio , Zhong Quan , Dalla Palma Maurizia , Stoeckert Kathryn A. , Domchek Susan M. , Nathanson Katherine L. , Caligo Maria A. , Vidal Marc , Cusick Michael E. , Garber Judy E.
Published: March 2023

Supplementary Figure 1 from Multimodal Assessment of Protein Functional Deficiency Supports Pathogenicity of BRCA1 p.V1688del
Supplementary Figure 5 from miR-15a and miR-16 Are Implicated in Cell Cycle Regulation in a Rb-Dependent Manner and Are Frequently Deleted or Down-regulated in Non–Small Cell Lung Cancer
Authors: Bandi Nora , Zbinden Samuel , Gugger Mathias , Arnold Marlene , Kocher Verena , Hasan Lara , Kappeler Andreas , Brunner Thomas , Vassella Erik
Published: March 2023

Supplementary Figure 5 from miR-15a and miR-16 Are Implicated in Cell Cycle Regulation in a Rb-Dependent Manner and Are Frequently Deleted or Down-regulated in Non–Small Cell Lung Cancer
Supplementary Figure Legends 1-4 from Inhibitors of Deacetylases Suppress Oncogenic KIT Signaling, Acetylate HSP90, and Induce Apoptosis in Gastrointestinal Stromal Tumors
Authors: Mühlenberg Thomas , Zhang Yixiang , Wagner Andrew J. , Grabellus Florian , Bradner James , Taeger Georg , Lang Hauke , Taguchi Takahiro , Schuler Martin , Fletcher Jonathan A. , Bauer Sebastian
Published: March 2023

Supplementary Figure Legends 1-4 from Inhibitors of Deacetylases Suppress Oncogenic KIT Signaling, Acetylate HSP90, and Induce Apoptosis in Gastrointestinal Stromal Tumors
Supplementary Figure Legends 1-7 from Sin3B Expression Is Required for Cellular Senescence and Is Up-regulated upon Oncogenic Stress
Authors: Grandinetti Kathryn B. , Jelinic Petar , DiMauro Teresa , Pellegrino Jessica , Fernández Rodríguez Rubén , Finnerty Patricia M. , Ruoff Rachel , Bardeesy Nabeel , Logan Susan K. , David Gregory
Published: March 2023

Supplementary Figure Legends 1-7 from Sin3B Expression Is Required for Cellular Senescence and Is Up-regulated upon Oncogenic Stress
Supplementary Figure 4 from Inhibitors of Deacetylases Suppress Oncogenic KIT Signaling, Acetylate HSP90, and Induce Apoptosis in Gastrointestinal Stromal Tumors
Authors: Mühlenberg Thomas , Zhang Yixiang , Wagner Andrew J. , Grabellus Florian , Bradner James , Taeger Georg , Lang Hauke , Taguchi Takahiro , Schuler Martin , Fletcher Jonathan A. , Bauer Sebastian
Published: March 2023

Supplementary Figure 4 from Inhibitors of Deacetylases Suppress Oncogenic KIT Signaling, Acetylate HSP90, and Induce Apoptosis in Gastrointestinal Stromal Tumors
Supplementary Figure 1 from Melanoma Antigen-11 Inhibits the Hypoxia-Inducible Factor Prolyl Hydroxylase 2 and Activates Hypoxic Response
Authors: Aprelikova Olga , Pandolfi Silvia , Tackett Sean , Ferreira Mark , Salnikow Konstantin , Ward Yvona , Risinger John I. , Barrett J. Carl , Niederhuber John
Published: March 2023

Supplementary Figure 1 from Melanoma Antigen-11 Inhibits the Hypoxia-Inducible Factor Prolyl Hydroxylase 2 and Activates Hypoxic Response
Supplementary Figure 1 from p38δ Mitogen-Activated Protein Kinase Is Essential for Skin Tumor Development in Mice
Authors: Schindler Eva M. , Hindes Anna , Gribben Erin L. , Burns Carole J. , Yin Yan , Lin Meei-Hua , Owen Robert J. , Longmore Gregory D. , Kissling Grace E. , Arthur J. Simon C. , Efimova Tatiana
Published: March 2023

Supplementary Figure 1 from p38δ Mitogen-Activated Protein Kinase Is Essential for Skin Tumor Development in Mice
Supplementary Figures 1-2 from Contribution of Granulocyte Colony-Stimulating Factor to the Acute Mobilization of Endothelial Precursor Cells by Vascular Disrupting Agents
Authors: Shaked Yuval , Tang Terence , Woloszynek Jill , Daenen Laura G. , Man Shan , Xu Ping , Cai Shi-Rong , Arbeit Jeffrey M. , Voest Emile E. , Chaplin David J. , Smythe Jon , Harris Adrian , Nathan Paul , Judson Ian , Rustin Gordon , Bertolini Francesco , Link Daniel C. , Kerbel Robert S.
Published: March 2023

Supplementary Figures 1-2 from Contribution of Granulocyte Colony-Stimulating Factor to the Acute Mobilization of Endothelial Precursor Cells by Vascular Disrupting Agents
Supplementary Tables 1-5 from The Development of a Selective Cyclin-Dependent Kinase Inhibitor That Shows Antitumor Activity
Authors: Ali Simak , Heathcote Dean A. , Kroll Sebastian H.B. , Jogalekar Ashutosh S. , Scheiper Bodo , Patel Hetal , Brackow Jan , Siwicka Alekasandra , Fuchter Matthew J. , Periyasamy Manikandan , Tolhurst Robert S. , Kanneganti Seshu K. , Snyder James P. , Liotta Dennis C. , Aboagye Eric O. , Barrett Anthony G.M. , Coombes R. Charles
Published: March 2023

Supplementary Tables 1-5 from The Development of a Selective Cyclin-Dependent Kinase Inhibitor That Shows Antitumor Activity
Supplementary Figure 4 from Cyclophosphamide Augments Antitumor Immunity: Studies in an Autochthonous Prostate Cancer Model
Authors: Wada Satoshi , Yoshimura Kiyoshi , Hipkiss Edward L. , Harris Tim J. , Yen Hung-Rong , Goldberg Monica V. , Grosso Joseph F. , Getnet Derese , Demarzo Angelo M. , Netto George J. , Anders Robert , Pardoll Drew M. , Drake Charles G.
Published: March 2023

Supplementary Figure 4 from Cyclophosphamide Augments Antitumor Immunity: Studies in an Autochthonous Prostate Cancer Model
Supplementary Table 1 from Secretion of Tumor-Specific Antigen by Myeloma Cells Is Required for Cancer Immunosurveillance by CD4+ T Cells
Authors: Corthay Alexandre , Lundin Katrin U. , Lorvik Kristina Berg , Hofgaard Peter O. , Bogen Bjarne
Published: March 2023

Supplementary Table 1 from Secretion of Tumor-Specific Antigen by Myeloma Cells Is Required for Cancer Immunosurveillance by CD4+ T Cells
Supplementary Figure 3 from Secretion of Tumor-Specific Antigen by Myeloma Cells Is Required for Cancer Immunosurveillance by CD4+ T Cells
Authors: Corthay Alexandre , Lundin Katrin U. , Lorvik Kristina Berg , Hofgaard Peter O. , Bogen Bjarne
Published: March 2023

Supplementary Figure 3 from Secretion of Tumor-Specific Antigen by Myeloma Cells Is Required for Cancer Immunosurveillance by CD4+ T Cells
Supplementary Figure Legends 1-6 from RETRACTED: Differential Effects of VEGFR-1 and VEGFR-2 Inhibition on Tumor Metastases Based on Host Organ Environment
Authors: Lee Yoon-Jin , Karl Daniel L. , Maduekwe Ugwuji N. , Rothrock Courtney , Ryeom Sandra , D'Amore Patricia A. , Yoon Sam S.
Published: March 2023

Supplementary Figure Legends 1-6 from RETRACTED: Differential Effects of VEGFR-1 and VEGFR-2 Inhibition on Tumor Metastases Based on Host Organ Environment
Supplementary References from Multikinase Inhibitors Induce Cutaneous Toxicity through OAT6-Mediated Uptake and MAP3K7-Driven Cell Death
Authors: Zimmerman Eric I. , Gibson Alice A. , Hu Shuiying , Vasilyeva Aksana , Orwick Shelley J. , Du Guoqing , Mascara Gerard P. , Ong Su Sien , Chen Taosheng , Vogel Peter , Inaba Hiroto , Maitland Michael L. , Sparreboom Alex , Baker Sharyn D.
Published: March 2023

Supplementary References used.
Figure S3 from Multikinase Inhibitors Induce Cutaneous Toxicity through OAT6-Mediated Uptake and MAP3K7-Driven Cell Death
Authors: Zimmerman Eric I. , Gibson Alice A. , Hu Shuiying , Vasilyeva Aksana , Orwick Shelley J. , Du Guoqing , Mascara Gerard P. , Ong Su Sien , Chen Taosheng , Vogel Peter , Inaba Hiroto , Maitland Michael L. , Sparreboom Alex , Baker Sharyn D.
Published: March 2023

Evaluation of MKI kinase targets in human primary keratinocytes
Supplementary Figure S4 from Genetic and Pharmacologic Inhibition of eIF4E Reduces Breast Cancer Cell Migration, Invasion, and Metastasis
Authors: Pettersson Filippa , del Rincon Sonia V. , Emond Audrey , Huor Bonnie , Ngan Elaine , Ng Jonathan , Dobocan Monica C. , Siegel Peter M. , Miller Wilson H.
Published: March 2023

Supplementary Figure S4. Knockdown of murine and human eIF4E suppresses TGF-B induction of vimentin and Snail.
Supplemental Table 6 from Host Age Is a Systemic Regulator of Gene Expression Impacting Cancer Progression
Authors: Beheshti Afshin , Benzekry Sébastien , McDonald J. Tyson , Ma Lili , Peluso Michael , Hahnfeldt Philip , Hlatky Lynn
Published: March 2023

Supplemental Table 6. The nine hallmarks of aging and the association to the analyzed gene array data
Supplementary Figure S4 from PI3K/mTOR Dual Inhibitor VS-5584 Preferentially Targets Cancer Stem Cells
Authors: Kolev Vihren N. , Wright Quentin G. , Vidal Christian M. , Ring Jennifer E. , Shapiro Irina M. , Ricono Jill , Weaver David T. , Padval Mahesh V. , Pachter Jonathan A. , Xu Qunli
Published: March 2023

Supplementary Figure S4. Representative images of tumorspheres formed by SUM159 and MCF7 cells.
Supplementary Figure Legends from Disrupting Hypoxia-Induced Bicarbonate Transport Acidifies Tumor Cells and Suppresses Tumor Growth
Authors: McIntyre Alan , Hulikova Alzbeta , Ledaki Ioanna , Snell Cameron , Singleton Dean , Steers Graham , Seden Peter , Jones Dylan , Bridges Esther , Wigfield Simon , Li Ji-Liang , Russell Angela , Swietach Pawel , Harris Adrian L.
Published: March 2023

Detailed Supplementary Figure Legends
Supplementary Figure 5 from Disrupting Hypoxia-Induced Bicarbonate Transport Acidifies Tumor Cells and Suppresses Tumor Growth
Authors: McIntyre Alan , Hulikova Alzbeta , Ledaki Ioanna , Snell Cameron , Singleton Dean , Steers Graham , Seden Peter , Jones Dylan , Bridges Esther , Wigfield Simon , Li Ji-Liang , Russell Angela , Swietach Pawel , Harris Adrian L.
Published: March 2023

Validation of HIF1α and HIF2α knockdown by quantitative-PCR in Ls174T.
Supplementary Figure 4 from Disrupting Hypoxia-Induced Bicarbonate Transport Acidifies Tumor Cells and Suppresses Tumor Growth
Authors: McIntyre Alan , Hulikova Alzbeta , Ledaki Ioanna , Snell Cameron , Singleton Dean , Steers Graham , Seden Peter , Jones Dylan , Bridges Esther , Wigfield Simon , Li Ji-Liang , Russell Angela , Swietach Pawel , Harris Adrian L.
Published: March 2023

Hypoxic induction of SLC4A4, SLC4A5 and SLC4A9 at 1% oxygen in Ls174T, U87 and MDA-MB-231 between 24 and 72 hours.
Supplementary Figure 3 from Disrupting Hypoxia-Induced Bicarbonate Transport Acidifies Tumor Cells and Suppresses Tumor Growth
Authors: McIntyre Alan , Hulikova Alzbeta , Ledaki Ioanna , Snell Cameron , Singleton Dean , Steers Graham , Seden Peter , Jones Dylan , Bridges Esther , Wigfield Simon , Li Ji-Liang , Russell Angela , Swietach Pawel , Harris Adrian L.
Published: March 2023

Hypoxic induction of bicarbonate transporters in U87 between 24 and 96 hours and in DLD-1 at 72 hours.
Supplementary Materials and Mehtods from Novel Morphologic and Genetic Analysis of Cancer Cells in a 3D Microenvironment Identifies STAT3 as a Regulator of Tumor Permeability Barrier Function
Authors: Park Min Chul , Jeong Hyobin , Son Sung Hwa , Kim YounHa , Han Daeyoung , Goughnour Peter C. , Kang Taehee , Kwon Nam Hoon , Moon Hyo Eun , Paek Sun Ha , Hwang Daehee , Seol Ho Jun , Nam Do-Hyun , Kim Sunghoon
Published: March 2023

Supplementary Materials and Mehtods
Supplementary figure 4 from SKAP2 Promotes Podosome Formation to Facilitate Tumor-Associated Macrophage Infiltration and Metastatic Progression
Authors: Tanaka Masamitsu , Shimamura Shintaro , Kuriyama Sei , Maeda Daichi , Goto Akiteru , Aiba Namiko
Published: March 2023

Metastasis assay of B16BL6 melanoma cells.
Supplemental Figure 2 from Endoplasmic Reticulum Stress Protein GRP78 Modulates Lipid Metabolism to Control Drug Sensitivity and Antitumor Immunity in Breast Cancer
Authors: Cook Katherine L. , Soto-Pantoja David R. , Clarke Pamela A.G. , Cruz M. Idalia , Zwart Alan , Wärri Anni , Hilakivi-Clarke Leena , Roberts David D. , Clarke Robert
Published: March 2023

A. Heat map of lipid metabolites in LCC1 and LCC9 cells transfected with control or GRP78 siRNA and treated with or without TAM. n=6. B. Relative levels of oleic ethanolamide and palmitoyl ethanolamide in LCC1 and LCC9 cells treated with vehicle, TAM, GRP78 siRNA or GRP78 siRNA+TAM. n=6. C. LCC9 cells were treated with 10 nM -1 microM oleic ethanolamide (OEA), and/or various doses (vehicle, 10 nM, 100 nM, 1000 nM) TAM for 6 days. Relative cell density was determined by crystal violet assay. n=4, *p<0.01.
Supplemental Figures from A Novel IL6 Antibody Sensitizes Multiple Tumor Types to Chemotherapy Including Trastuzumab-Resistant Tumors
Authors: Zhong Haihong , Davis April , Ouzounova Maria , Carrasco Rosa A. , Chen Cui , Breen Shannon , Chang Yong S. , Huang Jiaqi , Liu Zheng , Yao Yihong , Hurt Elaine , Moisan Jacques , Fung Michael , Tice David A. , Clouthier Shawn G. , Xiao Zhan , Wicha Max S. , Korkaya Hasan , Hollingsworth Robert E.
Published: March 2023

Supplemental Figures
Supplementary Table S2 from Deletion of Interstitial Genes between TMPRSS2 and ERG Promotes Prostate Cancer Progression
Authors: Linn Douglas E. , Penney Kathryn L. , Bronson Roderick T. , Mucci Lorelei A. , Li Zhe
Published: March 2023

Supplementary Table S2. Gene sets significantly (FDR q-val<0.25) enriched in T-delta-Erg/Pten-null HG-PINs compared to Pten-null HG-PINs.
Supplementary Figure Legends from miR-1298 Inhibits Mutant KRAS-Driven Tumor Growth by Repressing FAK and LAMB3
Authors: Zhou Ying , Dang Jason , Chang Kung-Yen , Yau Edwin , Aza-Blanc Pedro , Moscat Jorge , Rana Tariq M.
Published: March 2023

Legend for Supplementary Figures S1-S8
Supplementary Figure Legends from PRC2 Epigenetically Silences Th1-Type Chemokines to Suppress Effector T-Cell Trafficking in Colon Cancer
Authors: Nagarsheth Nisha , Peng Dongjun , Kryczek Ilona , Wu Ke , Li Wei , Zhao Ende , Zhao Lili , Wei Shuang , Frankel Timothy , Vatan Linda , Szeliga Wojciech , Dou Yali , Owens Scott , Marquez Victor , Tao Kaixiong , Huang Emina , Wang Guobin , Zou Weiping
Published: March 2023

This file contains the legends for the supplementary figures.
Supplemental Table S3 from JARID1D Is a Suppressor and Prognostic Marker of Prostate Cancer Invasion and Metastasis
Authors: Li Na , Dhar Shilpa S. , Chen Tsai-Yu , Kan Pu-Yeh , Wei Yongkun , Kim Jae-Hwan , Chan Chia-Hsin , Lin Hui-Kuan , Hung Mien-Chie , Lee Min Gyu
Published: March 2023

Top 150 genes up-regulated by JARID1D knockdown in DU145 cells.
Suppl. Figure 6 from Non–Small Cell Lung Cancer Cells Acquire Resistance to the ALK Inhibitor Alectinib by Activating Alternative Receptor Tyrosine Kinases
Authors: Isozaki Hideko , Ichihara Eiki , Takigawa Nagio , Ohashi Kadoaki , Ochi Nobuaki , Yasugi Masayuki , Ninomiya Takashi , Yamane Hiromichi , Hotta Katsuyuki , Sakai Katsuya , Matsumoto Kunio , Hosokawa Shinobu , Bessho Akihiro , Sendo Toshiaki , Tanimoto Mitsune , Kiura Katsuyuki
Published: March 2023

External HGF and conditioned medium leads to alectinib resistance in the EML4-ALK-positive cell line.
Supplemental Table from GON4L Drives Cancer Growth through a YY1–Androgen Receptor–CD24 Axis
Authors: Agarwal Neeraj , Dancik Garrett M. , Goodspeed Andrew , Costello James C. , Owens Charles , Duex Jason E. , Theodorescu Dan
Published: March 2023

The table shows qRT-PCR data for the knockdown of candidate genes in different bladder cancer cell lines transduced with shRNA containing lentivirus.
Supplemental figure 2 from An Imbalance in TAZ and YAP Expression in Hepatocellular Carcinoma Confers Cancer Stem Cell–like Behaviors Contributing to Disease Progression
Authors: Hayashi Hiromitsu , Higashi Takaaki , Yokoyama Naomi , Kaida Takayoshi , Sakamoto Keita , Fukushima Yukiko , Ishimoto Takatsugu , Kuroki Hideyuki , Nitta Hidetoshi , Hashimoto Daisuke , Chikamoto Akira , Oki Eiji , Beppu Toru , Baba Hideo
Published: March 2023

Changes in cyclin D1 mRNA expression by TAZ knockdown in HCC cells
Supplemental figure 1 from An Imbalance in TAZ and YAP Expression in Hepatocellular Carcinoma Confers Cancer Stem Cell–like Behaviors Contributing to Disease Progression
Authors: Hayashi Hiromitsu , Higashi Takaaki , Yokoyama Naomi , Kaida Takayoshi , Sakamoto Keita , Fukushima Yukiko , Ishimoto Takatsugu , Kuroki Hideyuki , Nitta Hidetoshi , Hashimoto Daisuke , Chikamoto Akira , Oki Eiji , Beppu Toru , Baba Hideo
Published: March 2023

Knockdown of TAZ or YAP expression by siRNA duplex oligonucleotides.
Supplementary Fig. 7 from APOBEC3A and APOBEC3B Activities Render Cancer Cells Susceptible to ATR Inhibition
Authors: Buisson Rémi , Lawrence Michael S. , Benes Cyril H. , Zou Lee
Published: March 2023

A figure that shows the cell cycle profiles and the induction of ssDNA in ATRi-treated cancer cell lines. It is supplementary to the main figure 7.
Supplemental Figures 1-4 from NF1+/− Hematopoietic Cells Accelerate Malignant Peripheral Nerve Sheath Tumor Development without Altering Chemotherapy Response
Authors: Dodd Rebecca D. , Lee Chang-Lung , Overton Tess , Huang Wesley , Eward William C. , Luo Lixia , Ma Yan , Ingram Davis R. , Torres Keila E. , Cardona Diana M. , Lazar Alexander J. , Kirsch David G.
Published: March 2023

Supplemental Figures 1-4
Supplementary Materials and Methods, and Legends from Resistance to the Antibody–Drug Conjugate T-DM1 Is Based in a Reduction in Lysosomal Proteolytic Activity
Authors: Ríos-Luci Carla , García-Alonso Sara , Díaz-Rodríguez Elena , Nadal-Serrano Mercedes , Arribas Joaquín , Ocaña Alberto , Pandiella Atanasio
Published: March 2023

Supplementary Materials and Methods, and Supplementary Legends
Supplemental Figures from Correlates of Prenatal and Early-Life Tobacco Smoke Exposure and Frequency of Common Gene Deletions in Childhood Acute Lymphoblastic Leukemia
Authors: de Smith Adam J. , Kaur Maneet , Gonseth Semira , Endicott Alyson , Selvin Steve , Zhang Luoping , Roy Ritu , Shao Xiaorong , Hansen Helen M. , Kang Alice Y. , Walsh Kyle M. , Dahl Gary V. , McKean-Cowdin Roberta , Metayer Catherine , Wiemels Joseph L.
Published: March 2023

Supplemental Figures S1-S7
Figure S1 to S8 from Copper Chelation Inhibits BRAFV600E-Driven Melanomagenesis and Counters Resistance to BRAFV600E and MEK1/2 Inhibitors
Authors: Brady Donita C. , Crowe Matthew S. , Greenberg Danielle N. , Counter Christopher M.
Published: March 2023

Compiled Supplementary Figures
Supplemental Figure 1 from CD40 Signaling Drives Potent Cellular Immune Responses in Heterologous Cancer Vaccinations
Authors: Nimanong Supot , Ostroumov Dmitrij , Wingerath Jessica , Knocke Sarah , Woller Norman , Gürlevik Engin , Falk Christine S. , Manns Michael P. , Kühnel Florian , Wirth Thomas C.
Published: March 2023

This figure demonstrates the ability of CD8 T cells induced by DC/CoAT immunizations to migrate to the bronchoalveolar space
Supplementary Figures from miRNA-520f Reverses Epithelial-to-Mesenchymal Transition by Targeting ADAM9 and TGFBR2
Authors: van Kampen Jasmijn G.M. , van Hooij Onno , Jansen Cornelius F. , Smit Frank P. , van Noort Paula I. , Schultz Iman , Schaapveld Roel Q.J. , Schalken Jack A. , Verhaegh Gerald W.
Published: March 2023

The supplementary figures file contains additional data that are not provided in the main text (because of space constraints). Fig. S1, Data on the miR-520f expression models, incl. phase-contrast images; Fig. S2, Schematic representation of SOEing PCR; Fig. S3, Reporter and cell line models to study EMT-reversal; Fig. S4, Membranous E-cadherin staining in PANC-1 cells; Fig. S5, Overview of the 3'-UTR reporter vectors; Fig. S6, Additional data on the in vivo (mouse) experiments.
Supplementary Table S1 from Circadian Clock Gene Bmal1 Inhibits Tumorigenesis and Increases Paclitaxel Sensitivity in Tongue Squamous Cell Carcinoma
Authors: Tang Qingming , Cheng Bo , Xie Mengru , Chen Yatao , Zhao Jiajia , Zhou Xin , Chen Lili
Published: March 2023

The clinical characteristics subjects in patient tissue samples
Supplementary Video S9 from Mitosis-Mediated Intravasation in a Tissue-Engineered Tumor–Microvessel Platform
Authors: Wong Andrew D. , Searson Peter C.
Published: March 2023

Transendothelial migration of an MDA-MB-231 breast cancer cell (BCC) following cell division without detaching into vessel flow.
Supplementary Table S9 from Multiscale Modeling of Inflammation-Induced Tumorigenesis Reveals Competing Oncogenic and Oncoprotective Roles for Inflammation
Authors: Guo Yucheng , Nie Qing , MacLean Adam L. , Li Yanda , Lei Jinzhi , Li Shao
Published: March 2023

Classification of GO terms. Based on the biological processes and key words, the GO pathways are classified into 20 classes.
Supplementary Video S2 from Mitosis-Mediated Intravasation in a Tissue-Engineered Tumor–Microvessel Platform
Authors: Wong Andrew D. , Searson Peter C.
Published: March 2023

Extended protrusions/invadopodia from an MDA-MB-231 breast cancer cell (BCC) are stabilized at the ECM-vessel interface.
Supplementary Video S1 from Mitosis-Mediated Intravasation in a Tissue-Engineered Tumor–Microvessel Platform
Authors: Wong Andrew D. , Searson Peter C.
Published: March 2023

Collective migration and invasion of breast cancer cells into the ECM-vessel interface.
Supplementary Figure S1 from Germline Lysine-Specific Demethylase 1 (LSD1/KDM1A) Mutations Confer Susceptibility to Multiple Myeloma
Authors: Wei Xiaomu , Calvo-Vidal M. Nieves , Chen Siwei , Wu Gang , Revuelta Maria V. , Sun Jian , Zhang Jinghui , Walsh Michael F. , Nichols Kim E. , Joseph Vijai , Snyder Carrie , Vachon Celine M. , McKay James D. , Wang Shu-Ping , Jayabalan David S. , Jacobs Lauren M. , Becirovic Dina , Waller Rosalie G. , Artomov Mykyta , Viale Agnes , Patel Jayeshkumar , Phillip Jude , Chen-Kiang Selina , Curtin Karen , Salama Mohamed , Atanackovic Djordje , Niesvizky Ruben , Landgren Ola , Slager Susan L. , Godley Lucy A. , Churpek Jane , Garber Judy E. , Anderson Kenneth C. , Daly Mark J. , Roeder Robert G. , Dumontet Charles , Lynch Henry T. , Mullighan Charles G. , Camp Nicola J. , Offit Kenneth , Klein Robert J. , Yu Haiyuan , Cerchietti Leandro , Lipkin Steven M.
Published: March 2023

PCA and gene based rare synonymous variant comparison analyses of European ancestry Multiple Myeloma cases and controls
Supplementary Figures from MALT1 Inhibition Is Efficacious in Both Naïve and Ibrutinib-Resistant Chronic Lymphocytic Leukemia
Authors: Saba Nakhle S. , Wong Deanna H. , Tanios Georges , Iyer Jessica R. , Lobelle-Rich Patricia , Dadashian Eman L. , Liu Delong , Fontan Lorena , Flemington Erik K. , Nichols Cydney M. , Underbayev Chingiz , Safah Hana , Melnick Ari , Wiestner Adrian , Herman Sarah E. M.
Published: March 2023

Supp. Fig. S1: MI-2 causes a dose- and time-dependent apoptotic induction selectively in primary CLL cells with minimal toxicity to normal B cells. Supp. Fig. S2: Sensitivity to MI-2 is independent of clinical or biological features classically associated with poor outcomes in CLL. Supp Fig. S3: Changes in ALC of patients being treated with ibrutinib
Supplementary Figures S1-S5 from DDB2 Is a Novel Regulator of Wnt Signaling in Colon Cancer
Authors: Huang Shuo , Fantini Damiano , Merrill Bradley J. , Bagchi Srilata , Guzman Grace , Raychaudhuri Pradip
Published: March 2023

Figure S1: DDB2 is required for the activation of Rnf43 mRNA expression (Related to Figure 1). Figure S2: mRNA expression of RNF43 decreases from Grade 2 to Grade 3 in human patient colon adenocarcinoma samples. Figure S3: DDB2 specifically binds with P2 region on Rnf43 regulatory region. Figure S4: CRISPR/Cas9 system was used to deleted DDB2 binding site on RNF43 upstream regulatory region (Related to Figure 2). Figure S5: HT-29 cells with deleted DDB2 binding motif showed decreased protein expression of RNF43 (Related to Figure 2).
Table S1 from Mesenchymal Stem Cells Promote Hepatocarcinogenesis via lncRNA–MUF Interaction with ANXA2 and miR-34a
Authors: Yan Xinlong , Zhang Dongdong , Wu Wei , Wu Shuheng , Qian Jingfeng , Hao Yajing , Yan Fang , Zhu Pingping , Wu Jiayi , Huang Guanling , Huang Yinghui , Luo Jianjun , Liu Xinhui , Liu Benyu , Chen Xiaomin , Du Ying , Chen Runsheng , Fan Zusen
Published: March 2023

LncRNA and mRNA transcripts are differentially expressed in three different HCC cells when cocultured with HCC-MSCs.
Figure S5 and Legend from MUC1-C Induces PD-L1 and Immune Evasion in Triple-Negative Breast Cancer
Authors: Maeda Takahiro , Hiraki Masayuki , Jin Caining , Rajabi Hasan , Tagde Ashujit , Alam Maroof , Bouillez Audrey , Hu Xiufeng , Suzuki Yozo , Miyo Masaaki , Hata Tsuyoshi , Hinohara Kunihiko , Kufe Donald
Published: March 2023

This file contains results showing that treatment of Eo771/MUC1-C tumors with GO-203/NPs increases CD69 (S5A) and granzyme B (S5B) expression in tumor cells.
Supplemental Table S2 from The NCI-60 Methylome and Its Integration into CellMiner
Authors: Reinhold William C. , Varma Sudhir , Sunshine Margot , Rajapakse Vinodh , Luna Augustin , Kohn Kurt W. , Stevenson Holly , Wang Yonghong , Heyn Holger , Nogales Vanesa , Moran Sebastian , Goldstein David J. , Doroshow James H. , Meltzer Paul S. , Esteller Manel , Pommier Yves
Published: March 2023

Correlations between expression and DNA methylation for 17,144 transcripts.
Supplementary Tables 6 through 14 from Cell-Specific Computational Modeling of the PIM Pathway in Acute Myeloid Leukemia
Authors: Silverbush Dana , Grosskurth Shaun , Wang Dennis , Powell Francoise , Gottgens Berthold , Dry Jonathan , Fisher Jasmin
Published: March 2023

The following tables are supplied in the excel file due to their sizes: Table S6. Phosphosite Overlap. PhosphoScan mass-spectrometry in MOLM16 cells after 3 hour treatment with AZD1208 Table S7. Literature Entries. Full literature entries. Table S8. Model Target Functions. Target functions for AML general model and cell specific calibrated AML model. Table S9. AML genotype state. Nodes settings for model initialization for each cell-specific state. Table S10. Immediate downstream effect of modelled AML genotypes. Direct modelled effect of each genotype. Table S11. Cell-specific AML network model replicates response to treatments reported in external publications. Summary of experimental conclusions compared to model predictions. Table S12. Combination strategy. showing predicted activity for combinations of PI3K inhibitor, AKT inhibitor, MEK inhibitor, and AKT inhibitor with the PIM inhibitor AZD1208 across the 4 AML cell lines. Table S13. MOLM16_Res_DNAseq. Whole exome DNA-seq for PIM inhibition resistant populations of MOLM16 cell line. Table S14. BIOGRID Interactions. BIOGRID interactions between putative resistant deriving genes to the RAS/PI3K and/or the AKT/MTOR signaling pathways.
Figure S3 from Activation of the Receptor Tyrosine Kinase AXL Regulates the Immune Microenvironment in Glioblastoma
Authors: Sadahiro Hirokazu , Kang Kyung-Don , Gibson Justin T. , Minata Mutsuko , Yu Hai , Shi Junfeng , Chhipa Rishi , Chen Zhihong , Lu Songjian , Simoni Yannick , Furuta Takuya , Sabit Hemragul , Zhang Suojun , Bastola Soniya , Yamaguchi Shinobu , Alsheikh Hebaallah , Komarova Svetlana , Wang Jun , Kim Sung-Hak , Hambardzumyan Dolores , Lu Xinghua , Newell Evan W. , DasGupta Biplab , Nakada Mitsutoshi , Lee L. James , Nabors Burt , Norian Lyse A. , Nakano Ichiro
Published: March 2023

Supplementary Figure S3. PROS1 is located in GSCs.
Supplementary data from Localized Synchrotron Irradiation of Mouse Skin Induces Persistent Systemic Genotoxic and Immune Responses
Authors: Ventura Jessica , Lobachevsky Pavel N. , Palazzolo Jason S. , Forrester Helen , Haynes Nicole M. , Ivashkevich Alesia , Stevenson Andrew W. , Hall Christopher J. , Ntargaras Andreas , Kotsaris Vasilis , Pollakis Gerasimos Ch. , Potsi Gianna , Skordylis Konstantinos , Terzoudi Georgia , Pateras Ioannis S. , Gorgoulis Vassilis G. , Georgakilas Alexandros G. , Sprung Carl N. , Martin Olga A.
Published: March 2023

Supplementary Data include: 1) extended methodology and additional references, 2) tables related to the experimental design, 3) figures: S1 (experimental design) and S2-S8 (related to additional analysis of DNA damage, other genotoxic markers and immune markers in off-target and target tissues)
Supplemental Table 1 from Complement Activation via a C3a Receptor Pathway Alters CD4+ T Lymphocytes and Mediates Lung Cancer Progression
Authors: Kwak Jeff W. , Laskowski Jennifer , Li Howard Y. , McSharry Maria V. , Sippel Trisha R. , Bullock Bonnie L. , Johnson Amber M. , Poczobutt Joanna M. , Neuwelt Alexander J. , Malkoski Stephen P. , Weiser-Evans Mary C. , Lambris John D. , Clambey Eric T. , Thurman Joshua M. , Nemenoff Raphael A.
Published: March 2023

This shows the efficiency of immuodepletion experiments
Figure S4 from The FACT inhibitor CBL0137 Synergizes with Cisplatin in Small-Cell Lung Cancer by Increasing NOTCH1 Expression and Targeting Tumor-Initiating Cells
Authors: De Sarmishtha , Lindner Daniel J. , Coleman Claire J. , Wildey Gary , Dowlati Afshin , Stark George R.
Published: March 2023

Supplementary Fig S4. FACT is involved in the expression of regulatory stem cell transcription factors in TICs. A and B, CD44high cells derived from H446 and CD133high cells derived from H526 were treated with 500 nM (H446) or 1ÂµM (H526) CBL0137 for 24 h. The mRNA levels of SOX2 were analyzed by qPCR (A), and SOX2 protein levels were determined by Western analysis (B).
Table S8 from Genomic and Epigenomic Signatures in Ovarian Cancer Associated with Resensitization to Platinum Drugs
Authors: Fang Fang , Cardenas Horacio , Huang Hao , Jiang Guanglong , Perkins Susan M. , Zhang Chi , Keer Harold N. , Liu Yunlong , Nephew Kenneth P. , Matei Daniela
Published: March 2023

Table S8. deconvolution_results
Figure S3 from A Subpopulation of Stromal Cells Controls Cancer Cell Homing to the Bone Marrow
Authors: Rossnagl Stephanie , Ghura Hiba , Groth Christopher , Altrock Eva , Jakob Franz , Schott Sarah , Wimberger Pauline , Link Theresa , Kuhlmann Jan Dominik , Stenzl Arnulf , Hennenlotter Jörg , Todenhöfer Tilmann , Rojewski Markus , Bieback Karen , Nakchbandi Inaam A.
Published: March 2023

Supplementary-Figure 3 Correlations between MSCs, CFU-f and homing (A) The percentage of detected MSCs in vivo in control mice and after PTH/ZA treatment correlates negatively with the number of detected tumor cells in the bone marrow, n=40, Pearson''s correlation r=-0.59. (B) The percentage of detected MSCs in vivo in control mice and after PTH/ZA treatment correlates positively with the number of CFU-fs in vitro. (n=27; Pearson correlation r=0.57). (C) In the absence of tumor cells, the combination of PTH/ZA diminishes the MSC subpopulation. Please compare to Fig. 1G obtained in the presence of cancer cells, n=9/12/9/9 in three experiments. Apoptosis after PTH/ZA treatment (D) Apoptosis in CD45- Ter119- CD31+ cells increased after treatment with PTH/ZA and ZA alone, whereas apoptosis in CD45- Ter119- CD146+ cells only increased in the PTH/ZA-treated group, n=10/12/7/7 in 3 experiments.
Supplemental Data Table 1 from Coactivation of Estrogen Receptor and IKKβ Induces a Dormant Metastatic Phenotype in ER-Positive Breast Cancer
Authors: El-Shennawy Lamiaa , Dubrovskyi Oleksii , Kastrati Irida , Danes Jeanne M. , Zhang Yiqun , Whiteley Herbert E. , Creighton Chad J. , Frasor Jonna
Published: March 2023

This file contains gene expression profiling data for MCF-7-CA-IKKβ cells treated with E2, DOX, E2+DOX.
Supplemental Table 2 from Comparative Transcriptome Analysis Quantifies Immune Cell Transcript Levels, Metastatic Progression, and Survival in Osteosarcoma
Authors: Scott Milcah C. , Temiz Nuri A. , Sarver Anne E. , LaRue Rebecca S. , Rathe Susan K. , Varshney Jyotika , Wolf Natalie K. , Moriarity Branden S. , O'Brien Timothy D. , Spector Logan G. , Largaespada David A. , Modiano Jaime F. , Subramanian Subbaya , Sarver Aaron L.
Published: March 2023

Tumor Counts, number of Outcome events and GCESS Outcome threshold values
Supplemental Table S2 from MBD2 Ablation Impairs Lymphopoiesis and Impedes Progression and Maintenance of T-ALL
Authors: Zhou Mi , Zhou Kuangguo , Cheng Ling , Chen Xing , Wang Jue , Wang Xiao-Min , Zhang Yingchi , Yu Qilin , Zhang Shu , Wang Di , Huang Liang , Huang Mei , Ma Ding , Cheng Tao , Wang Cong-Yi , Yuan Weiping , Zhou Jianfeng
Published: March 2023

This table shows the sequences of primers used in ChIP assays.
Supplementary data from Cancer-Associated MORC2-Mutant M276I Regulates an hnRNPM-Mediated CD44 Splicing Switch to Promote Invasion and Metastasis in Triple-Negative Breast Cancer
Authors: Zhang Fang-Lin , Cao Jin-Ling , Xie Hong-Yan , Sun Rui , Yang Li-Feng , Shao Zhi-Ming , Li Da-Qiang
Published: March 2023

The supplementary information includes 9 supplementary Figures and 8 supplementary tables: Figure S1. Analysis of MORC2 mutational frequency in human cancer from the cBioPortal for Cancer Genomics database. Figure S2. Analysis of MORC2 mutational frequency in various types of human cancer in the COSMIC database. Figure S3. The mutational patterns of MORC2 in breast cancer. Figure S4. Clinical information of the TNBC patient harboring the M276I mutation. Figure S5. Detection of the MORC2 M276I mutation in TNBC cell lines by targeted exon sequencing. Figure S6. Schematic representation of the structural domains of human MORC2 protein. Figure S7. The M276I mutation does not affect cell proliferation and cell-cycle progression. Figure S8. The M276I mutation enhances migratory and invasive potential of TNBC cells. Figure S9. Both WT and M276I mutant MORC2 do not interact with hnRNPA1 and hnRNPL. Table S1. Information for the expression vectors used in this study. Table S2. Primers used for molecular cloning of expression vectors. Table S3. siRNA target sequences for hnRNPL. Table S4. Primary antibodies and antibody-conjugated magnetic beads used in this study. Table S5. Primers for qPCR analysis. Table S6. Primers used for targeted exon sequencing of MORC2-M276 mutation in TNBC cell lines. Table S7. The list of 48 proteins that interact with both WT and mutant M276I MORC2. Table S8. The GO molecular functions analyses of 48 proteins that interact with both WT and mutant M276I MORC2 using the PANTHER program.
Supplementary Figure S7 from Myeloid Cells That Impair Immunotherapy Are Restored in Melanomas with Acquired Resistance to BRAF Inhibitors
Authors: Steinberg Shannon M. , Shabaneh Tamer B. , Zhang Peisheng , Martyanov Viktor , Li Zhenghui , Malik Brian T. , Wood Tamara A. , Boni Andrea , Molodtsov Aleksey , Angeles Christina V. , Curiel Tyler J. , Whitfield Michael L. , Turk Mary Jo
Published: March 2023

BRAFi responsiveness and resistance kinetics in RAG -/- and CD8 -/- versus wild-type mice.
Supplementary Figure S3 from Myeloid Cells That Impair Immunotherapy Are Restored in Melanomas with Acquired Resistance to BRAF Inhibitors
Authors: Steinberg Shannon M. , Shabaneh Tamer B. , Zhang Peisheng , Martyanov Viktor , Li Zhenghui , Malik Brian T. , Wood Tamara A. , Boni Andrea , Molodtsov Aleksey , Angeles Christina V. , Curiel Tyler J. , Whitfield Michael L. , Turk Mary Jo
Published: March 2023

Heat maps depicting individual gene expression changes following extended BRAFi treatment in individual mice.
Supplementary Table.1 from TGFβ Promotes Genomic Instability after Loss of RUNX3
Authors: Krishnan Vaidehi , Chong Yu Lin , Tan Tuan Zea , Kulkarni Madhura , Bin Rahmat Muhammad Bakhait , Tay Lavina Sierra , Sankar Haresh , Jokhun Doorgesh S. , Ganesan Amudha , Chuang Linda Shyue Huey , Voon Dominic C. , Shivashankar GV , Thiery Jean-Paul , Ito Yoshiaki
Published: March 2023

Supplementary Table 1 shows the differential expression analysis of RNA sequencing data. A list of genes that are differentially expressed upon TGF-beta treatment as well as upon RUNX3-Knockdown are shown.
Supplementary Materials from Tumor-Associated Fatigue in Cancer Patients Develops Independently of IL1 Signaling
Authors: Grossberg Aaron J. , Vichaya Elisabeth G. , Christian Diana L. , Molkentine Jessica M. , Vermeer Daniel W. , Gross Phillip S. , Vermeer Paola D. , Lee John H. , Dantzer Robert
Published: March 2023

This file contains methods and references for data presented in the supplement and legends for Supplementary Figures S1-S4
Supplementary Figure S5 from LSD1 Stimulates Cancer-Associated Fibroblasts to Drive Notch3-Dependent Self-Renewal of Liver Cancer Stem–like Cells
Authors: Liu Chungang , Liu Limei , Chen Xuejiao , Cheng Jiamin , Zhang Heng , Zhang Chengcheng , Shan Juanjuan , Shen Junjie , Qian Cheng
Published: March 2023

Notch signaling transcription regulates SIRT1 to modulate LSD1 expression.
Supplementary Figure S1 from LSD1 Stimulates Cancer-Associated Fibroblasts to Drive Notch3-Dependent Self-Renewal of Liver Cancer Stem–like Cells
Authors: Liu Chungang , Liu Limei , Chen Xuejiao , Cheng Jiamin , Zhang Heng , Zhang Chengcheng , Shan Juanjuan , Shen Junjie , Qian Cheng
Published: March 2023

LSD1 regulates liver CSCs tumour growth.
Supplementary Figure Legends, Methods and References from LSD1 Stimulates Cancer-Associated Fibroblasts to Drive Notch3-Dependent Self-Renewal of Liver Cancer Stem–like Cells
Authors: Liu Chungang , Liu Limei , Chen Xuejiao , Cheng Jiamin , Zhang Heng , Zhang Chengcheng , Shan Juanjuan , Shen Junjie , Qian Cheng
Published: March 2023

Legends for Supplementary Figure S1-S7, and description of additional methods used in our study. Also includs Supplementary References.
Figure S4 from Mutational Mechanisms That Activate Wnt Signaling and Predict Outcomes in Colorectal Cancer Patients
Authors: Hankey William , McIlhatton Michael A. , Ebede Kenechi , Kennedy Brian , Hancioglu Baris , Zhang Jie , Brock Guy N. , Huang Kun , Groden Joanna
Published: March 2023

Overexpression of MAP6, MSRB3 or PXDC1 in human colorectal tumors correlates with shorter disease-free survival (TCGA Provisional dataset).
Figure S3 from Inhibition of Translesion DNA Synthesis as a Novel Therapeutic Strategy to Treat Brain Cancer
Authors: Choi Jung-Suk , Kim Casey Seol , Berdis Anthony
Published: March 2023

Michaelis-Menten plots for the utilization of dATP catalyzed by pol eta during the replication of an abasic site.
Supplementary Table 2 from WNT/β-Catenin Directs Self-Renewal Symmetric Cell Division of hTERThigh Prostate Cancer Stem Cells
Authors: Zhang Kai , Guo Yanjing , Wang Xue , Zhao Huifang , Ji Zhongzhong , Cheng Chaping , Li Li , Fang Yuxiang , Xu Dawei , Zhu Helen He , Gao Wei-Qiang
Published: March 2023

Supplementary Table 2: Primer sequences used in the qRT-PCR experiment
Supplementary Information from Attenuated TRAF3 Fosters Activation of Alternative NF-κB and Reduced Expression of Antiviral Interferon, TP53, and RB to Promote HPV-Positive Head and Neck Cancers
Authors: Zhang Jialing , Chen Tony , Yang Xinping , Cheng Hui , Späth Stephan S. , Clavijo Paul E. , Chen Jianhong , Silvin Christopher , Issaeva Natalia , Su Xiulan , Yarbrough Wendell G. , Annunziata Christina M. , Chen Zhong , Van Waes Carter
Published: March 2023

Supplementary Methods, related references, and Figures: S1, 2 Effects TRAF3 on alternate pathway proteins; S2, Effects TRAF3 on alternate pathway proteins; S3, Effects of TNF/LTB on NF-kB reporter activity and TRAF3 siRNA on alternate pathway; S4, Effects TRAF3 on cisplatin and anti-apoptotic genes; S5, TRAF3 loss with passage; S6-8, TRAF3 effects on IRF expression; S9, TRAF3 effects on TP53, RB, p21; S10, TRAF3 effects on E6; S11, Diagram illustrating the genetic and cellular mechanisms linked to deficient TRAF3 in HPV+ HNSCC.
Supplementary Fig 7 related to Fig 7 from WNT/β-Catenin Directs Self-Renewal Symmetric Cell Division of hTERThigh Prostate Cancer Stem Cells
Authors: Zhang Kai , Guo Yanjing , Wang Xue , Zhao Huifang , Ji Zhongzhong , Cheng Chaping , Li Li , Fang Yuxiang , Xu Dawei , Zhu Helen He , Gao Wei-Qiang
Published: March 2023

Supplementary Fig 7 related to Fig 7: Validation of beta-catenin knockdown efficiency in PCa cells
Supplementary Fig 6 related to Fig 6 from WNT/β-Catenin Directs Self-Renewal Symmetric Cell Division of hTERThigh Prostate Cancer Stem Cells
Authors: Zhang Kai , Guo Yanjing , Wang Xue , Zhao Huifang , Ji Zhongzhong , Cheng Chaping , Li Li , Fang Yuxiang , Xu Dawei , Zhu Helen He , Gao Wei-Qiang
Published: March 2023

Supplementary Fig 6 related to Fig 6: PCa tissues with elevated WNT signaling activation express higher level of hTERT
Supplementary Fig 3 related to Fig 3 from WNT/β-Catenin Directs Self-Renewal Symmetric Cell Division of hTERThigh Prostate Cancer Stem Cells
Authors: Zhang Kai , Guo Yanjing , Wang Xue , Zhao Huifang , Ji Zhongzhong , Cheng Chaping , Li Li , Fang Yuxiang , Xu Dawei , Zhu Helen He , Gao Wei-Qiang
Published: March 2023

Supplementary Fig 3 related to Fig 3: hTERT enhances the holoclone formation capacity of PCa cells
Supplementary Methods from Kindlin-1 Promotes Pulmonary Breast Cancer Metastasis
Authors: Sarvi Sana , Patel Hitesh , Li Jun , Dodd Georgia L. , Creedon Helen , Muir Morwenna , Ward Jocelyn , Dawson John C. , Lee Martin , Culley Jayne , Salter Donald M. , Sims Andrew H. , Byron Adam , Brunton Valerie G.
Published: March 2023

Additional methods for experiments shown in the supplementary figures