bluuebunny/crossref_metadata_2025 huggingface dataset:
Extent and Characteristics of a Newly Discovered Unique Bryozoan Biogenic Reef Complex
Authors: Dutka Travis Luke , Fejer Alex J. , Williams Tim , Donnelly David M. , Flynn Adrian J.
Published: February 2022

Using multibeam echosounding (R2Sonic, Austin, Texas) combined with underwater observation and imagery surveys, this study sought to estimate the size and describe the typology of newly discovered biogenic bryozoan reefs in Western Port (VIC, Australia). The bryozoan species forming the biogenic structure are Triphyllozoon moniliferum, T. munitum (both fenestrate forms and dominant on the reef) and Celleporaria (non-fenestrate form and sub-dominant). The bryozoan biogenic reefs occupy a total area of 1.74 km2. Their distribution appears to be geomorphically and depth-controlled, which might limit their maximum possible extent. The Western Port bryozoan reefs are unique and globally significant because they: (1) occur in shallow water (typically 5–10 m), (2) are dominated by delicate fenestrate colonies of T. moniliferum and T. munitum, (3) have two distinct morphologies (linear and patch-like), (4) form continuous rows of reef interspersed with fine sediment, and (5) the size and vertical relief (up to approximately 1.5 m) are among the largest recorded in the world. In Western Port, these bryozoan reefs are habitat-forming and may represent sites of enhanced biodiversity, which is currently being investigated in another separate study and are likely important habitat utilised by commercially and recreationally fished species. The bryozoan biogenic reefs are a previously unrecognised feature of conservation significance in this Ramsar site. The reefs are potentially vulnerable to physical damage from recreational fishing practices, sediment smothering and scouring, algal encroachment and hydrological alteration. Recommendations for monitoring and potential management of this unique biotope are made.
Clearance of Chronic Actinic Dermatitis With Dupilumab Therapy in Chinese Patients: A Case Series
Authors: Ali Kamran , Wu Liming , Lou HaiYue , Zhong Jianbo , Qiu YunMi , Da JiaYang , Shan JingPeng , Lu KaiNing
Published: February 2022

Chronic actinic dermatitis (CAD) is a rare chronic immunological photo-dermatosis resulting in pruritic eczematous eruption on sun-exposed skin to ultraviolet (UV) light. The disease mechanism may include a delay-type hypersensitivity reaction to an endogenous photo-induced antigen, postulated to be UVR-altered DNA, but the exact pathophysiology is unknown. Minimum erythema dosing and patch testing are diagnostic tools of CAD. There are limited safe and effective treatment options for CAD. Herein, a case series of three patients with severe recalcitrant CAD is presented after being treated with dupilumab off-label. The patients in this study had persistent severe disease and taken the first-line management plan, which consists of topical calcineurin inhibitors (TCI), topical corticosteroids (TCS), and strict photoprotection. However, the above treatment options were not able to control the symptoms. The patients were treated with dupilumab 600 mg first dose, 300 mg biweekly subcutaneously (SC), and hydroxychloroquine. Dupilumab showed excellent clinical benefits, including safe and well-tolerated in chronic actinic dermatitis. Further studies are required to be carried out before being applied in clinical practice.
Mortality Among Hospitalized Patients With Pleural Effusions. A Multicenter, Observational, Prospective Study
Authors: Markatis Eleftherios , Perlepe Garifallia , Afthinos Andreas , Pagkratis Konstantinos , Varsamas Charalampos , Chaini Eleftheria , Papanikolaou Ilias C. , Gourgoulianis Konstantinos I.
Published: February 2022

Background

Data regarding the prognostic significance of pleural effusion (PE) are scarce.

Objective

Explore the impact of PE on mortality among hospitalized patients.

Methods

Multicenter prospective observational study. Patients that underwent computed tomography (thorax and/or abdomen) and in which PE was detected, were admitted to the study. PE was classified by size on CT, anatomical distribution, diagnosis, and Light's criteria. Charlson comorbidity index (CCI), APACHE II, and SOFA score were calculated. Mortality at 1 month and 1 year were recorded.

Results

Five hundred and eight subjects, mean age 78 years. Overall mortality was 22.6% at 1 month and 49.4% at 1 year. Bilateral effusions were associated with higher mortality than unilateral effusions at 1 month (32 vs. 13.3%, p = 0.005) and large effusions with higher mortality than small effusions at 1 year (66.6 vs. 43.3%, p < 0.01). On multivariate analysis age, CCI, APACHE II, SOFA score, and bilateral distribution were associated with short-term mortality, while long-term significant predictors were CCI, APACHE II, SOFA, and malignant etiology. Exudates (excluding MPE) exhibited a survival benefit at both 1 month and 1 year but due to the smaller sample, fluid characteristics were not included in the multivariate analysis.

Conclusions

Pleural effusion is a marker of advanced disease. Mortality is higher within the first month in patients with PEs related to organ failure, while patients with MPE have the worst long-term outcome. Independent predictors of mortality, apart from CCI, APACHE II, and SOFA scores, are age and bilateral distribution in the short-term, and malignancy in the long-term.
Allergic Bronchopulmonary Mycosis Caused by Mucor Overlapping With Invasive Pulmonary Mucormycosis: A Case Report
Authors: Zhang Ruhui , Jin Ge , Zhan Yasheng , Shen Lisha , Yao Yake , Gao Qiqi , Yang Qing , Zhou Jianying , Zhou Hua
Published: February 2022

Mucormycosis is a rare and invasive fungal infection with high mortality. Cases of invasive pulmonary mucormycosis that involve allergic reactions such as allergic bronchopulmonary mycosis are rarely reported. Herein, we describe a case of invasive pulmonary mucormycosis overlapping with allergic diseases in a patient who presented with eosinophilia and high total plasma immunoglobulin E (IgE). The patient was successfully treated with systemic corticosteroids (initial dose of prednisolone approximately 0.5 mg/kg per day, total duration less than 3 months) combined with posaconazole antifungal therapy. The treatment resulted in recovery of peripheral-blood eosinophil count and total plasma IgE, and significant reduction in lung lesions. A subsequent lobectomy was performed. The findings in this case indicate that systemic corticosteroid therapy may contribute to the treatment of pulmonary mucormycosis combined with allergic factors.
Vaginal Exposure to Candida albicans During Early Gestation Results in Adverse Pregnancy Outcomes via Inhibiting Placental Development
Authors: Dong Zhiyong , Fan Chong , Hou Wenwen , Rui Can , Wang Xinyan , Fan Yuru , Zhao Ling , Wang Qing , Wang Zhichong , Zeng Xin , Feng Shanwu , Li Ping
Published: February 2022

Vulvovaginal candidiasis (VVC) is considered the second most common cause of vaginitis after bacterial vaginosis and the most common lower genital tract infection during pregnancy. Candida albicans (C. albicans), an opportunistic pathogen, is the major species causing VVC. Recently, increasing researches have shown that lower reproductive tract infection during pregnancy can lead to various adverse pregnancy outcomes. However, the underlying mechanisms are not fully understood. Hence, we successfully established a mouse model of vaginal C. albicans infection and characterized the adverse pregnancy outcomes. C. albicans infection strikingly increased abortion rate and decreased litter size. Further analysis of placental development demonstrated that placental structure was abnormal, including that the area of spongiotrophoblast (Spo) and labyrinth (Lab) was reduced, and the formation of placental vessel was decreased in Lab zone. Accordingly, the expression of marker genes during placental development was downregulated. Collectively, the above findings revealed that vaginal C. albicans infection during pregnancy can inhibit placental development and ultimately lead to adverse pregnancy outcomes. This study enhances our comprehension of the effect of VVC on pregnancy, and placental dysplasia as a feasible orientation to explore VVC during pregnancy.
Processing and Subcellular Localization of the Hepatitis E Virus Replicase: Identification of Candidate Viral Factories
Authors: Metzger Karoline , Bentaleb Cyrine , Hervouet Kévin , Alexandre Virginie , Montpellier Claire , Saliou Jean-Michel , Ferrié Martin , Camuzet Charline , Rouillé Yves , Lecoeur Cécile , Dubuisson Jean , Cocquerel Laurence , Aliouat-Denis Cécile-Marie
Published: February 2022

Hepatitis E virus (HEV) is the major cause of acute hepatitis worldwide. HEV is a positive-sense RNA virus expressing three open reading frames (ORFs). ORF1 encodes the ORF1 non–structural polyprotein, the viral replicase which transcribes the full-length genome and a subgenomic RNA that encodes the structural ORF2 and ORF3 proteins. The present study is focused on the replication step with the aim to determine whether the ORF1 polyprotein is processed during the HEV lifecycle and to identify where the replication takes place inside the host cell. As no commercial antibody recognizes ORF1 in HEV-replicating cells, we aimed at inserting epitope tags within the ORF1 protein without impacting the virus replication efficacy. Two insertion sites located in the hypervariable region were thus selected to tolerate the V5 epitope while preserving HEV replication efficacy. Once integrated into the infectious full-length Kernow C-1 p6 strain, the V5 epitopes did neither impact the replication of genomic nor the production of subgenomic RNA. Also, the V5-tagged viral particles remained as infectious as the wildtype particles to Huh-7.5 cells. Next, the expression pattern of the V5-tagged ORF1 was compared in heterologous expression and replicative HEV systems. A high molecular weight protein (180 kDa) that was expressed in all three systems and that likely corresponds to the unprocessed form of ORF1 was detected up to 25 days after electroporation in the p6 cell culture system. Additionally, less abundant products of lower molecular weights were detected in both in cytoplasmic and nuclear compartments. Concurrently, the V5-tagged ORF1 was localized by confocal microscopy inside the cell nucleus but also as compact perinuclear substructures in which ORF2 and ORF3 proteins were detected. Importantly, using in situ hybridization (RNAScope ®), positive and negative-strand HEV RNAs were localized in the perinuclear substructures of HEV-producing cells. Finally, by simultaneous detection of HEV genomic RNAs and viral proteins in these substructures, we identified candidate HEV factories.
The Role of Deubiquitinases in Virus Replication and Host Innate Immune Response
Authors: Zhang Qinglin , Jia Qizhen , Gao Wenying , Zhang Wenyan
Published: February 2022

As a critical post-translational modification, ubiquitination is known to affect almost all the cellular processes including immunity, signaling pathways, cell death, cancer development, and viral infection by controlling protein stability. Deubiquitinases (DUBs) cleave ubiquitin from proteins and reverse the process of ubiquitination. Thus, DUBs play an important role in the deubiquitination process and serve as therapeutic targets for various diseases. DUBs are found in eukaryotes, bacteria, and viruses and influence various biological processes. Here, we summarize recent findings on the function of DUBs in modulating viral infection, the mechanism by which viral DUBs regulate host innate immune response, and highlight those DUBs that have recently been discovered as antiviral therapeutic targets.
High-Density, Actively Multiplexed µECoG Array on Reinforced Silicone Substrate
Authors: Rachinskiy Iakov , Wong Liane , Chiang Chia-Han , Wang Charles , Trumpis Michael , Ogren John I. , Hu Zhe , McLaughlin Bryan , Viventi Jonathan
Published: February 2022

Simultaneous interrogation of electrical signals from wide areas of the brain is vital for neuroscience research and can aid in understanding the mechanisms of brain function and treatments for neurological disorders. There emerges a demand for development of devices with highly conformal interfaces that can span large cortical regions, have sufficient spatial resolution, and chronic recording capability while keeping a small implantation footprint. In this work, we have designed 61 channel and 48 channel high-density, cortical, micro-electrocorticographic electrode arrays with 400 µm pitch on an ultra-soft but durable substrate. We have also developed a custom multiplexing integrated circuit (IC), methods for packaging the IC in a water-tight liquid crystal polymer casing, and a micro-bonding method for attaching the electronics package to the electrode array. With the integrated multiplexer, the number of external wire connections can be reduced to 16 wires, thereby diminishing the invasive footprint of the device. Both the electrode array and IC were tested in vivo in a rat model to demonstrate the ability to sense finely-localized electrophysiological signals.
An Interplay Between Post-Traumatic Epilepsy and Associated Cognitive Decline: A Systematic Review
Authors: Ngadimon Irma Wati , Aledo-Serrano Angel , Arulsamy Alina , Mohan Devi , Khoo Ching Soong , Cheong Wing Loong , Shaikh Mohd. Farooq
Published: February 2022

Background

Post-traumatic epilepsy (PTE) is a devastating neurological outcome of traumatic brain injury (TBI), which may negatively impact the quality of life of patients with TBI, and may impose a huge socioeconomic burden. This burden may be due to long-term functional outcomes associated with PTE, particularly cognitive dysfunction. To date, the relationship between TBI and PTE remains unclear, with little known about how the effect of their link on cognitive function as well.

Objective

Thus, this systematic review aimed at elucidating the relationship between PTE and cognitive impairment in adults after TBI based on available clinical studies, in hopes to aid in the development of therapeutic strategies for PTE.

Methods

A systematic literature search was performed using 6 databases; MEDLINE, Embase, CINAHL, Psych INFO, Web of Science, and Cochrane to retrieve relevant clinical studies investigating the link between PTE and cognition in the context of TBI. The Newcastle-Ottawa Scale (NOS) was used to assess the methodological quality of relevant studies.

Results

A total of six eligible studies were included for critical appraisal in this review after performing the inclusion and exclusion criteria, which involved 1,100 individuals, from 1996 to 2021. The selected studies were derived from the civilian and military population, with a follow-up period that ranged from 6 months to 35 years. The average quality of the involved studies was moderate (6.6, SD = 1.89). Five out of six studies found poorer cognitive performance in people with PTE, compared with those without PTE. Although the association between PTE and cognitive impairment was insignificant after controlling for specific covariates, there was a statistical trend toward significance.

Conclusion

This systematic review suggests that there may be a possible link between PTE and cognitive decline in TBI patients, with the latter being reported to occur up to 35 years post injury. Variations in sample sizes, follow-up periods, and neuropsychological assessment tools may be the limitations affecting the interpretation and significance of this relationship. Therefore, future studies with standard cognitive assessment tools may be warranted to solidify the link between TBI-PTE-cognitive dysfunction, prior to the development of therapeutic strategies.

Systematic Review Registration:https://www.crd.york.ac.uk/prospero/display_record.php?ID=CRD42020221702, prospero identifier: CRD42020221702.
Investigating the Precise Localization of the Grasping Action in the Mid-Cingulate Cortex and Future Directions
Authors: Rahman Zebunnessa , Murray Nicholas W. G. , Sala-Padró Jacint , Bartley Melissa , Dexter Mark , Fung Victor S. C. , Mahant Neil , Bleasel Andrew Fabian , Wong Chong H.
Published: February 2022

Objective

To prospectively study the cingulate cortex for the localization and role of the grasping action in humans during electrical stimulation of depth electrodes.

Methods

All the patients (n= 23) with intractable focal epilepsy and a depth electrode stereotactically placed in the cingulate cortex, as part of their pre-surgical epilepsy evaluation from 2015 to 2017, were included. Cortical stimulation was performed and examined for grasping actions. Post-implantation volumetric T1 MRIs were co-registered to determine the exact electrode position.

Results

Five patients (male: female 4:1; median age 31) exhibited contralateral grasping actions during electrical stimulation. All patients had electrodes implanted in the ventral bank of the right cingulate sulcus adjacent to the vertical anterior commissure (VAC) line. Stimulation of other electrodes in adjacent regions did not elicit grasping.

Conclusion

Grasping action elicited from a localized region in the mid-cingulate cortex (MCC) directly supports the concept of the cingulate cortex being crucially involved in the grasping network. This opens an opportunity to explore this region with deep brain stimulation as a motor neuromodulation target for treatment in specific movement disorders or neurorehabilitation.
LMO1 Plays an Oncogenic Role in Human Glioma Associated With NF-kB Pathway
Authors: Gao Lei , Wu Jia , Wang Hai , Yang Yongyu , Zheng Zongliao , Ni Bowen , Wang Xiran , Peng Yuping , Li Yaomin
Published: February 2022

Background

LIM domain only protein1(LMO1), a nuclear transcription coregulator, is implicated in the pathogenesis of T-cell acute lymphoblastic leukemia and neuroblastoma. However, the clinical significance and potential mechanism of LMO1 in human gliomas remain to be determined.

Methods

In this study, expression level data and clinical information were obtained via three databases. The Cox proportional hazards regression model was used to predict outcomes for glioma patients. In vitro and in vivo assays were used to explore the function of LMO1 in human glioma. Gene set enrichment analysis (GSEA), RNA-seq and western blot were used to explore the potential molecular mechanisms. A prognostic model was built for predicting the overall survival(OS) of human glioma patients.

Results

High LMO1 expression was associated with a high tumor grade and a poor prognosis in patients. High levels of LMO1 mRNA were correlated with poor prognosis in patients with isocitrate dehydrogenase (IDH)-wild-type (wt) and 1p/19q non-codeletion gliomas. Gene silencing of LMO1 significantly inhibited tumor growth, invasion and migration in vitro. In contrast, LMO1 over-expression promoted tumor growth, invasion and migration. Mechanically, LMO1 may positively regulate the level of NGFR mRNA and protein. NGFR mediated the regulation between LMO1 and NF-kB activation. Consistently, the nude mice study further confirmed that knockdown of LMO1 blocked tumor growth via NGFR-NF-kB axis. Finally, The nomogram based on the LMO1 signature for overall survival (OS) prediction in human glioma patients exhibited good performance in the individual mortality risk.

Conclusion

This study provides new insights and evidences that high level expression of LMO1 is significantly correlated with progression and prognosis in human gliomas. LMO1 played a critical role in tumorigenesis and progression. The present study first investigated the LMO1–NGFR–NF-kB axis regulate cell growth and invasion in human glioma cells, whereby targeting this pathway may be a therapeutic target for glioma.
Butorphanol Suppresses the Proliferation and Migration of Osteosarcoma by Promoting the Expression of piRNA hsa_piR_006613
Authors: Cui Pengfei , Xin Deqian , Li Fu , Deng Lin , Gao Yujie
Published: February 2022

Butorphanol, a partial agonist of opioid receptor κ 1 receptor, can and is widely used as an analgesic drug to relieve moderate and severe pain in clinic. Osteosarcoma is one of the most common malignant bone tumor in adolescents under the age of 20. To our knowledge no study has investigated the effect of butorphanol on the proliferation of osteosarcoma cells. In this study, The proliferation of osteosarcoma cells was measured by CCK-8 and colony formation assays, and the migration of osteosarcoma cells were detected by scratch and transwell assays. The expression of piRNA was detected by RNA sequencing and real-time PCR. PiRNA mimics or inhibitors have been used to upregulate or inhibit piRNA expression in osteosarcoma cells, respectively. We found that butorphanol, at the concentration of 10ug/ml or higher, could significantly inhibit the proliferation and migration of osteosarcoma cells. Our resuslts indicated that butorphanol promoted the expression of piRNA hsa_piR_006613 and overexpression of piRNA hsa_piR_006613 inhibited the proliferation and migration of osteosarcoma cells. our study also showed that inhibition of the expression of piRNA hsa_piR_006613 could promote the proliferation and migration of osteosarcoma cells. Butorphanol played the regulatory role on osteosarcoma cells in dependent of piRNA hsa_piR_006613. Butorphanol was found to inhibit the proliferation and migration of osteosarcoma cells by promoting piRNA hsa_piR_006613 expression. Bioinformatics analysis showed that hsa_piR_006613 downregulated FN1 protein expression by binding with 3’-UTR of FN1 mRNA. In all, the present research indicated that butorphanol suppresses the proliferation of osteosarcoma by promoting the expression of piRNA hsa_piR_006613, which downregulated the expression of FN1. Has_piR_006613 may become a new therapeutic target for osteosarcoma.
The Clinical and Prognostic Impact of the Choice of Surgical Approach to Fourth Ventricular Tumors in a Single-Center, Single-Surgeon Cohort of 92 Consecutive Pediatric Patients
Authors: Onorini Nicola , Spennato Pietro , Orlando Valentina , Savoia Fabio , Calì Camilla , Russo Carmela , De Martino Lucia , de Santi Maria Serena , Mirone Giuseppe , Ruggiero Claudio , Quaglietta Lucia , Cinalli Giuseppe
Published: February 2022

Objective

A single-institution cohort of 92 consecutive pediatric patients harboring tumors involving the fourth ventricle, surgically treatedviathe telovelar or transvermian approach, was retrospectively reviewed in order to analyze the impact of surgical route on surgery-related outcomes and cumulative survival.

Methods

Clinical, radiological, surgical, and pathology details were retrospectively analyzed. We selected n = 6 surgery-related clinical and radiological outcomes: transient and permanent neurological deficits, duration of assisted ventilation, postoperative new onset medical events, postoperative cerebellar mutism, and extent of resection. We built univariate and multivariate logistic models to analyze the significance of relationships between the surgical routes and the outcomes. Cumulative survival (CS) was estimated by the cohort approach.

Results

There were 53 girls and 39 boys (mean age, 83 months). Telovelar approach was performed in 51 cases and transvermian approach in 41 cases. Early postoperative MRI studies showed complete removal in 57 cases (62%) and measurable residual tumor in 35 cases (38%). The average tumor residual volume was 1,316 cm3(range, 0.016–4.231 cm3; median value, 0.9875 cm3). Residual disease was more often detected on immediate postop MRI after telovelar approach, but the difference was not significant. Cerebellar mutism was observed in 10 cases (11%). No significant difference in the onset of cerebellar mutism was detected between telovelar and transvermian approach. The choice of surgical approach did not significantly modify any other postoperative outcome and 1-/3-year CS of high-grade surgically treated tumors.

Conclusions

With the limitation of a single-center, single-surgeon retrospective series, our findings offer significant data to reconsider the real impact of the choice of the surgical route to the fourth ventricle on the incidence of cerebellar mutism and surgery-related morbidity. This seems to be in line with some recent reports in the literature. Surgical approach to the fourth ventricle should be individualized according to the location of the tumor, degree of vermian infiltration, and lateral and upward extension. Telovelar and transvermian approaches should not be considered alternative but complementary. Pediatric neurosurgeons should fully master both approaches and choose the one that they consider the best for the patient based on a thorough and careful evaluation of pre-operative imaging.
Complex Crystal Structure Determination of Hsp90N-NVP-AUY922 and In Vitro Anti-NSCLC Activity of NVP-AUY922
Authors: He Chun-Xia , Lv You , Guo Meng , Zhou Huan , Qin Wei , Zhao Dong , Li Hui-Jin , Xing Lu , Zhou Xin , Li Peng-Quan , Yu Feng , He Jian-Hua , Cao Hui-Ling
Published: February 2022

New targeted chemotherapy agents greatly improved five-year survival in NSCLC patients, but which were susceptible to drug resistance. NVP-AUY922, terminated in phase II clinical trials, exhibited promising anti-NSCLC (non-small-cell lung cancer) activity targeting to Hsp90N (heat shock protein), which demonstrated advantages in overcoming drug resistance as a broad-spectrum anti-cancer target. It was expected to develop novel anti-NSCLC drugs to overcome drug resistance by the structural optimization of NVP-AUY922. However, the absence of high-resolution complex crystal structure of Hsp90N-NVP-AUY922 blocked the way. Herein, 1.59 Å-resolution complex crystal structure of Hsp90N-NVP-AUY922 (PDB ID 6LTI) was successfully determined by X-ray diffraction. Meanwhile, there was a strong binding capability between NVP-AUY922 and its target Hsp90N verified by TSA (ΔTm, −15.56 ± 1.78°C) and ITC (Kd, 5.10 ± 2.10 nM). Results by the complex crystal structure, TSA and ITC verified that NVP-AUY922 well accommodated in the ATP-binding pocket of Hsp90N to disable the molecular chaperone activity of Hsp90. Therefore, NVP-AUY922 exhibited approving inhibitory activity on NSCLC cell line H1299 (IC50, 2.85 ± 0.06 μM) by inhibiting cell proliferation, inducing cell cycle arrest and promoting cell apoptosis. At the basis of the complex crystal structure and molecular interaction analysis, thirty-two new NVP-AUY922 derivatives were further designed, and among which twenty-eight new ones display enhanced binding force with Hsp90N by molecular docking evaluation. The results would promote anti-NSCLC new drug development to overcome drug resistance based on the lead compound NVP-AUY922.
Case Report: Metagenomic Next-Generation Sequencing Can Contribute to the Diagnosis and Treatment of Disseminated Visceral Kaposi Sarcoma Following Allogeneic Haematopoietic Stem Cell Transplantation
Authors: Zhou Kuangguo , Xu Jinhuan , Shang Zhen , Sun Hanying , Shen Kefeng , Xiao Yi
Published: February 2022

Disseminated visceral Kaposi sarcoma (KS) following allogeneic haematopoietic stem cell transplantation (HSCT) is a rare but life-threatening posttransplant complication. A suitable management strategy for disseminated KS involvement in transplant patients is unclear. Here, we reported a patient who developed disseminated visceral KS following HSCT, which was the first detailed report documenting the relationship among KS development, delayed immune reconstitution, and HHV-8 DNA levels by metagenomic next-generation sequencing (mNGS). The HHV-8 viral load peaked at 2071 sequence reads with an absolute lymphocyte count of 0.17×109/L on day +242. On day +536, the HHV-8 viral load became undetectable, with an absolute lymphocyte count of 1.06×109/L and the KS disappearance. HHV-8 load in blood detected by mNGS may be used as an early prediction marker for KS, a guide for early withdrawal of immunosuppression, and a tool to monitor KS treatment response in the setting of HSCT, especially in patients with CMV-seropositive or graft failure postengraftment. Through whole-exome sequencing, we explored the molecular mechanism underlying the patient’s longer latency of haematopoietic or immune reconstitution and recurrent infections. Germline mutations in the FANCI and RAD51 genes might impair the patient’s DNA repair ability, leading to a degree of immunodeficiency and tumour susceptibility. We strongly recommended evaluating the clinical history of the donor and investigating whether there were possible germline mutations suspected for immunodeficiency or familial neoplasms. Disseminated visceral KS patients could likely benefit from chemotherapy, especially if the disease appears to be aggressive.
Specific Premature Groups Have Better Benefits When Treating Apnea With Caffeine Than Aminophylline/Theophylline
Authors: Lin Yi-Chieh , Tan Yin-Ling , Yen Ting-An , Chen Chien-Yi , Tsao Po-Nien , Chou Hung-Chieh
Published: February 2022

Background

Methylxanthines (caffeine; aminophylline/theophylline) are commonly used for apnea of prematurity (AOP) treatment. We aimed to compare the efficacy and adverse effects of caffeine and aminophylline/theophylline.

Methods

A retrospective case–control gestational age-matched study investigates patients born between January 2017 and December 2018, 23–35 weeks gestation with birth weights >500 g treating AOP with caffeine or aminophylline/theophylline.

Results

There were 144 cases (48 in caffeine group and 96 in aminophylline/theophylline group). The median treatment durations were 11 and 17 days in caffeine and aminophylline/theophyllinegroup (p = 0.002). When tachycardia is defined as heart rate ≥160 bpm, the rates were 8.3 and 34.4% in caffeine and control group (p = 0.001). When tachycardia is defined as 10 bpm over baseline heart rate, the rates were 41.7 and 63.5% in caffeine and aminophylline/theophylline group (p = 0.01). Stratified by gestational age and sex, significant reductions in tachycardia rates with caffeine than with theophylline were limited to male infants and infants born at <30 weeks gestation.

Conclusions

For apnea treatment, caffeine has greater efficacy and fewer tachycardia than aminophylline/theophylline, especially in male infants and infants born at <30 weeks gestation.
Case Report: COVID-19 Pandemic Exacerbates Eating Disorder by Social and Intrafamilial Isolation
Authors: Katsumi Yoshiki , Kodo Kazuki , Goto Sachiko
Published: February 2022

The coronavirus disease-2019 (COVID-19) pandemic has increased the stress levels of children and their parents and diagnoses of eating disorders (EDs), irritable bowel syndrome, migraines, tension headaches, orthostatic dysregulation, and/or school refusal has increased among children. We present a case of a nine-year old girl, which rapidly worsened due to stress and isolation related to the COVID-19 pandemic. The patient's father noted her rapid weight loss due to poor oral intake. While she had already stopped gaining weight before the pandemic, her weight rapidly decreased to 22 kg during the pandemic. We diagnosed her with an ED and administrated nasogastric tube feeding. We postulated that not only social isolation, but also the disruption in her relationship with her parents, due to the pandemic, contributed to her ED. During a family meeting, she revealed that she felt more anxious during the pandemic. After the meeting, her parents rescheduled their jobs so that the family can have dinner together every night. The patient started eating sufficiently and weighed 31.8 kg at the one-year follow-up. The proportion of children with ED increased during the pandemic; their symptoms worsened because they felt lonely due to social and intrafamilial isolation. While parents have themselves experienced more stress during the pandemic, children, including those with ED, have experienced increased stress related directly to the pandemic, as well as indirectly from their parents. Pediatricians should consider the impact of stress on children, especially from social and intrafamilial isolation, both during and after the pandemic.
Reynoutria japonica Houtt for Acute Respiratory Tract Infections in Adults and Children: A Systematic Review
Authors: Wang Zhi-Jie , Trill Jeanne , Tan Lin-Lin , Chang Wen-Jing , Zhang Yu , Willcox Merlin , Xia Ru-Yu , Jiang Yue , Moore Michael , Liu Jian-Ping , Hu Xiao-Yang
Published: February 2022

Introduction: Respiratory tract infections (RTIs) are a major cause of morbidity and mortality in some high-risk groups including children and older adults. There is evidence that Chinese herbal medicine has an effect on RTIs. Reynoutria japonica Houtt (better known under its synonym Fallopia japonica (Houtt.) Ronse Decr.) (F. japonica), a commonly used Chinese herbal medicine, has a high content of resveratrol and glycosides. In traditional Chinese medicine theory, F. japonica has the effect of clearing heat in the body, improving blood and qi circulation, eliminating phlegm, and relieving cough, so it may have an effect on RTIs.

Methods: This systematic review was registered under PROSPERO CRD42020188604. Databases were searched for randomized controlled trials of F. japonica as a single herb, or as a component of a complex herbal formula for RTIs. Quality of methodology was assessed by two reviewers independently using the Cochrane Risk of Bias Tool. The primary outcome was symptom improvement rate. The secondary outcome measures were fever clearance time, Murray lung injury score and incidence of adverse effects. The extracted data were pooled and meta-analysed by RevMan 5.3 software.

Results: Eight RCTs with 1,123 participants with acute RTIs were included in this systematic review, and all the RCTs used F. japonica as part of a herbal mixture. Only one included trial used F. japonica in a herbal mixture without antibiotics in the treatment group. The findings showed that herbal remedies that included F. japonica could increase the symptom improvement rate (risk ratio 1.14, 95% confidence intervals [1.09, 1.20], I2 = 0%, p < 0.00001, n = 7 trials, 1,013 participants), shorten fever duration, reduce Murray lung injury score and did not increase adverse events (RR 0.33, 95% CI [0.11, 1.00], I2 = 0%, p = 0.05, n = 5 trials, 676 participants).

Conclusion: There is limited but some evidence that F. japonica as part of a herbal mixture may be an effective and safe intervention for acute RTIs in clinical practice. In future studies it would be preferable to evaluate the effectiveness and safety of using F. japonica without antibiotics for acute RTIs.
Driving an Oxidative Phenotype Protects Myh4 Null Mice From Myofiber Loss During Postnatal Growth
Authors: Zeng Caiyun , Shi Hao , Kirkpatrick Laila T. , Ricome Aymeric , Park Sungkwon , Scheffler Jason M. , Hannon Kevin M. , Grant Alan L. , Gerrard David E.
Published: February 2022

Postnatal muscle growth is accompanied by increases in fast fiber type compositions and hypertrophy, raising the possibility that a slow to fast transition may be partially requisite for increases in muscle mass. To test this hypothesis, we ablated the Myh4 gene, and thus myosin heavy chain IIB protein and corresponding fibers in mice, and examined its consequences on postnatal muscle growth. Wild-type and Myh4–/– mice had the same number of muscle fibers at 2 weeks postnatal. However, the gastrocnemius muscle lost up to 50% of its fibers between 2 and 4 weeks of age, though stabilizing thereafter. To compensate for the lack of functional IIB fibers, type I, IIA, and IIX(D) fibers increased in prevalence and size. To address whether slowing the slow-to-fast fiber transition process would rescue fiber loss in Myh4–/– mice, we stimulated the oxidative program in muscle of Myh4–/– mice either by overexpression of PGC-1α, a well-established model for fast-to-slow fiber transition, or by feeding mice AICAR, a potent AMP kinase agonist. Forcing an oxidative metabolism in muscle only partially protected the gastrocnemius muscle from loss of fibers in Myh4–/– mice. To explore whether traditional means of stimulating muscle hypertrophy could overcome the muscling deficits in postnatal Myh4–/– mice, myostatin null mice were bred with Myh4–/– mice, or Myh4–/– mice were fed the growth promotant clenbuterol. Interestingly, both genetic and pharmacological stimulations had little impact on mice lacking a functional Myh4 gene suggesting that the existing muscle fibers have maximized its capacity to enlarge to compensate for the lack of its neighboring IIB fibers. Curiously, however, cell signaling events responsible for IIB fiber formation remained intact in the tissue. These findings further show disrupting the slow-to-fast transition of muscle fibers compromises muscle growth postnatally and suggest that type IIB myosin heavy chain expression and its corresponding fiber type may be necessary for fiber maintenance, transition and hypertrophy in mice. The fact that forcing muscle metabolism toward a more oxidative phenotype can partially compensates for the lack of an intact Myh4 gene provides new avenues for attenuating the loss of fast-twitch fibers in aged or diseased muscles.
NLIMED: Natural Language Interface for Model Entity Discovery in Biosimulation Model Repositories
Authors: Munarko Yuda , Sarwar Dewan M. , Rampadarath Anand , Atalag Koray , Gennari John H. , Neal Maxwell L. , Nickerson David P.
Published: February 2022

Semantic annotation is a crucial step to assure reusability and reproducibility of biosimulation models in biology and physiology. For this purpose, the COmputational Modeling in BIology NEtwork (COMBINE) community recommends the use of the Resource Description Framework (RDF). This grounding in RDF provides the flexibility to enable searching for entities within models (e.g., variables, equations, or entire models) by utilizing the RDF query language SPARQL. However, the rigidity and complexity of the SPARQL syntax and the nature of the tree-like structure of semantic annotations, are challenging for users. Therefore, we propose NLIMED, an interface that converts natural language queries into SPARQL. We use this interface to query and discover model entities from repositories of biosimulation models. NLIMED works with the Physiome Model Repository (PMR) and the BioModels database and potentially other repositories annotated using RDF. Natural language queries are first “chunked” into phrases and annotated against ontology classes and predicates utilizing different natural language processing tools. Then, the ontology classes and predicates are composed as SPARQL and finally ranked using our SPARQL Composer and our indexing system. We demonstrate that NLIMED's approach for chunking and annotating queries is more effective than the NCBO Annotator for identifying relevant ontology classes in natural language queries.Comparison of NLIMED's behavior against historical query records in the PMR shows that it can adapt appropriately to queries associated with well-annotated models.
Validity of Velocity Measurements of a Motorized Resistance Device During Change of Direction
Authors: Eriksrud Ola , Ahlbeck Fredrik , Harper Damian , Gløersen Øyvind
Published: February 2022

The aim of this study was to determine validity of velocity measurements of a motorized resistance device (MRD) during change of direction (CoD). Eight male (age: 22.1 ± 4.2 yrs; weight: 83.3 ± 17.1 kg; height: 181.6 ± 12.6 cm) and three female participants (age: 21.7 ± 1.5 yrs; mass: 69.7 ± 2.4 kg; height: 167.0 ± 3.6 cm) completed the modified 505 CoD test (m505) with turning off the left and right foot while exposed to external loads (3, 6, and 9 kg) provided by the MRD. Three-dimensional kinematic data were measured (200 Hz) for all tests using a full-body marker set with an additional marker placed on the pulley used to attach the carabiner (CAR) at the end of the line from the MRD to the participant. Average velocity of overall center of mass (COMvel), pelvis (COMpelvis_vel), and pulley (CARvel) was then calculated and compared to the velocity measured by MRD (MRDvel) in 0.5 s intervals 1.5 s before and after CoD. Average velocities from these intervals were then compared using correlational, Bland–Altman analysis, coefficient of variation (CV), and statistical parametric mapping (SPM). Mostly, excellent correlations were observed and ranged from 0.93 to 1.00, 0.53 to 1.00 and 0.93 to 1.00 for the 3, 6, and 9 kg load conditions, respectively. CV values ranged from 0.3 to 3.2%, 0.8 to 4.3%, and 1.5 to 7.7% for the CARvel, COMpelvis_vel, and COMvel comparisons, respectively. The biases for CARvel comparisons ranged from −0.027 to 0.05 m/s, −0.246 to 0.128 m/s and −0.486 to 0.082 m/s across all load conditions and time intervals for the CARvel, COMpelvis_vel, and COMvel comparisons, respectively. SPM analysis indicated significant differences between MRDvel and COMvel and COMpelvis_vel over short time periods during the CoD, but no difference between MRDvel and CARvel. The velocity measurements obtained by a MRD during a m505 test are valid as low biases, low CV’s, and high correlations are observed for the MRDvel to CARvel comparison. As single points of measurement (i.e., laser) has been proven useful to assess other athletic tasks (i.e., sprint running), the single point CARvel comparison is an appropriate comparison for validating MRDvel measurements during the m505 test.
Phenotypic Characterization, Genetic Diversity Assessment in 6,778 Accessions of Barley (Hordeum vulgare L. ssp. vulgare) Germplasm Conserved in National Genebank of India and Development of a Core Set
Authors: Kaur Vikender , Aravind J. , Manju  , Jacob Sherry R. , Kumari Jyoti , Panwar Bhopal S. , Pal Narendra , Rana Jai C. , Pandey Anjula , Kumar Ashok
Published: February 2022

The entire collection of cultivated barley germplasm accessions conserved in the Indian National Genebank (INGB) was characterized for nine qualitative and 8 quantitative traits to assess the nature and magnitude of prevailing genetic variability and to develop a core set. A wide range of variability was observed for days to spike emergence (51–139 days), days to physiological maturity (100–152 days), plant height (45.96–171.32 cm), spike length (3.44–13.73 cm), grain number/spike (10.48–82.35), and 100-grain weight (1.20–6.86 g). Initially, seven independent core sets were derived using 3 core construction tools– MSTRAT, PowerCore, and Core Hunter 3 by employing the maximization method, heuristic sampling, and optimisation of average genetic distances, respectively. The core set-3 generated by Core Hunter 3 by simultaneous optimisation of diversity and representativeness, captured maximum genetic diversity of the whole collection as evident from the desirable genetic distance, variance difference percentage (VD; 87.5%), coincidence rate of range (CR; 94.27%) and variable rate of coefficient of variance (VR; 113.8%), which were more than threshold value of VD (80%), CR (80%), and VR (100%) required for good core collection. The coefficient of variation and Shannon–Weaver diversity indices were increased in the core set as compared with the whole collection. The low value of Kullback-Leibler distance (0.024–0.071) for all traits and quantile-quantile plots revealed a negligible difference between trait distribution patterns among the core set and entire assembly. Correlogram revealed that trait associations and their magnitude were conserved for most of the traits after sampling of the core set. The extraction of the INGB barley core set and identification of promising accessions for agronomically important traits in different genetic backgrounds will pave the way for expedited access to genetically diverse and agronomically important germplasm for barley breeding.
Applying Plant Hydraulic Physiology Methods to Investigate Desiccation During Prolonged Cold Storage of Horticultural Trees
Authors: Sheridan Rebecca A. , Nackley Lloyd L.
Published: February 2022

Plant nursery production systems are a multi-billion-dollar, international, and horticultural industry that depends on storing and shipping live plants. The storage environment represents potentially desiccating and even fatal conditions for dormant, bareroot, and deciduous horticulture crops, like orchard trees, forestry trees, ornamental trees, and grapevines. When tree mortality is considered within a plant hydraulic framework, plants experiencing water stress are thought to ultimately die from hydraulic failure or carbon starvation. We hypothesized that the hydraulic framework can be applied to stored crops to determine if hydraulic failure or carbon starvation could be attributed to mortality. We used deciduous trees as model species because they are important horticultural crops and provide a diversity of hydraulic strategies. We selected cultivars from six genera: Acer, Amelanchier, Gleditsia, Gymnocladus, Malus, and Quercus. For each cultivar, we measured stem hydraulic conductance and vulnerability to embolism. On a weekly basis for 14 weeks (March–June), we removed trees of each cultivar from cold storage (1–2°C). Each week and for each cultivar, we measured stem water potential and water content (n = 7) and planted trees to track survival and growth (n = 10). At three times during this period, we also measured non-structural carbohydrates. Our results showed that for four cultivars (Acer, Amelanchier, Malus, and Quercus), the stem water potentials measured in trees removed from storage did not exceed stem P50, the water potential at which 50% of stem hydraulic conductivity is lost. This suggests that the water transport system remains intact during storage. For two cultivars (Gleditsia and Gymnocladus), the water potential measured on trees out of storage exceeded stem P50, yet planted trees from all weeks survived and grew. In the 14 weeks, there were no significant changes or directional trends in stem water potential, water content, or NSC for most cultivars, with a few exceptions. Overall, the results show that the trees did not experience detrimental water relations or carbon starvation thresholds. Our results suggest that many young deciduous trees are resilient to conditions caused by prolonged dormancy and validate the current storage methods. This experiment provides an example of how a mechanistically based understanding of physiological responses can inform cold storage regimes in nursery tree production.