bluuebunny/crossref_metadata_2025 huggingface dataset:
Supplemental Figure Legends from Active FOXO1 Is a Key Determinant of Isoform-Specific Progesterone Receptor Transactivation and Senescence Programming
Authors: Diep Caroline H. , Knutson Todd P. , Lange Carol A.
Published: April 2023

Supplemental Figures Legends 1-5
Supplemental Figure 1 from Oncofetal Chondroitin Sulfate Glycosaminoglycans Are Key Players in Integrin Signaling and Tumor Cell Motility
Authors: Clausen Thomas Mandel , Pereira Marina Ayres , Al Nakouzi Nader , Oo Htoo Zarni , Agerbæk Mette Ø , Lee Sherry , Ørum-Madsen Maj Sofie , Kristensen Anders Riis , El-Naggar Amal , Grandgenett Paul M. , Grem Jean L. , Hollingsworth Michael A. , Holst Peter J. , Theander Thor , Sorensen Poul H. , Daugaard Mads , Salanti Ali
Published: April 2023

SiRNA against CSGALNACT1 recapitulates phenotype seen with rVAR2 incubation
Supplemental figures 1-4 from miR-181a Targets RGS16 to Promote Chondrosarcoma Growth, Angiogenesis, and Metastasis
Authors: Sun Xiaojuan , Charbonneau Cherie , Wei Lei , Chen Qian , Terek Richard M.
Published: April 2023

Supplemental figures 1-4. S1. Analysis miR-181a copy numbers in gDNA samples with TaqMan Copy Number Assay. A-D, are representative images for negative control, CS-1, JJ, and Huvec samples. E, miR-181a copy number was calculated from absolute quantification data using RainDance Software for the three samples. S2. ELISA shows VEGF (A) and pro-MMP1 (B) secretion in condition medium in CS-1 and CS-1 transduced with lenti-construct control sequence (Zip-con). There is no significant difference. P>0.05, n=4. S3. RGS16 is a predicted target of miR-181a. S4. Alignment of miR-181a with 3' UTR of RGS16.
Supplementary Figure S2 from FOXO3a and Posttranslational Modifications Mediate Glucocorticoid Sensitivity in B-ALL
Authors: Consolaro Francesca , Ghaem-Maghami Sadaf , Bortolozzi Roberta , Zona Stefania , Khongkow Mattaka , Basso Giuseppe , Viola Giampietro , Lam Eric W.-F.
Published: April 2023

JNK, p38 and ERK inhibitors do not substantially inhibit the cytotoxic and cytostatic function of dexamethasone in B-ALL cell lines REH and RS4;11 cells were treated with a range of concentrations of (0-100μM) of JNK, p38 and ERK inhibitors, SP600125, SB202190 and PD98059 and/or dexamethasone. Cell viability analysis was performed after 72 h using MTT assay.
Supplemental Figure Legends from S1P Stimulates Proliferation by Upregulating CTGF Expression through S1PR2-Mediated YAP Activation
Authors: Cheng Jung-Chien , Wang Evan Y. , Yi Yuyin , Thakur Avinash , Tsai Shu-Huei , Hoodless Pamela A.
Published: April 2023

Supplemental Figure Legends
Figure S2 from S1P Stimulates Proliferation by Upregulating CTGF Expression through S1PR2-Mediated YAP Activation
Authors: Cheng Jung-Chien , Wang Evan Y. , Yi Yuyin , Thakur Avinash , Tsai Shu-Huei , Hoodless Pamela A.
Published: April 2023

S FIG. 2. S1P2 is required for S1P-induced mouse HCC cell proliferation.
Figure S1 from S1P Stimulates Proliferation by Upregulating CTGF Expression through S1PR2-Mediated YAP Activation
Authors: Cheng Jung-Chien , Wang Evan Y. , Yi Yuyin , Thakur Avinash , Tsai Shu-Huei , Hoodless Pamela A.
Published: April 2023

S FIG. 1. S1P treatment induces YAP YAP nuclear translocation in HepG2 and Hepa1-6 cells.
Supplementary figures from RAD51 and BRCA2 Enhance Oncolytic Adenovirus Type 5 Activity in Ovarian Cancer
Authors: Tookman Laura A. , Browne Ashley K. , Connell Claire M. , Bridge Gemma , Ingemarsdotter Carin K. , Dowson Suzanne , Shibata Atsushi , Lockley Michelle , Martin Sarah A. , McNeish Iain A.
Published: April 2023

S1. RAD51 and ï�§H2AX foci in PEO1 and PEO4 cells. S2. Cisplatin and rucaparib dose responses in PEO1 and PEO4 cells. S3. dl922-947 sensitivty in PEO1 and PEO4 cells - clonogenic assays. S4. Long exposure Southern blot for adenovirus type 5 DNA in PEO1 and PEO4. S5. Ad11 and A35 cytotoxicity. S6. Baseline cell cycle status in PEO1 and PEO4 cells. S7. E2DBP and BRCA2 co-localise in TOV21G cells following dl922-947 infection. S8. RAD51 siRNA in PEO1 and PEO4 using second siRNA species. S9. RAD51 siRNA in HeLa cells. S10. RAD51 siRNA in PEO1 and PE4 cells - clonogenic assays. S11. DR-GFP following RAD51 siRNA.
Supplementary Materials and Methods from miR-155 Is Downregulated in Familial Adenomatous Polyposis and Modulates WNT Signaling by Targeting AXIN1 and TCF4
Authors: Prossomariti Anna , Piazzi Giulia , D'Angelo Leonarda , Miccoli Sara , Turchetti Daniela , Alquati Chiara , Montagna Claudio , Bazzoli Franco , Ricciardiello Luigi
Published: April 2023

APC gene target sequencing and in silico analysis
Supplementary Figures 4-5 from Olaparib, Monotherapy or with Ionizing Radiation, Exacerbates DNA Damage in Normal Tissues: Insights from a New p21 Reporter Mouse
Authors: McMahon Michael , Frangova Tania G. , Henderson Colin J. , Wolf C. Roland
Published: April 2023

Figure S4: Beta-gal staining of lung, liver, and kidney sections from untreated and irradiated p21 reporter mice. Figure S5: Beta-gal staining of spleen, thymus, and heart sections from untreated and irradiated p21 reporter mice.
Figure S1 from miR-155 Is Downregulated in Familial Adenomatous Polyposis and Modulates WNT Signaling by Targeting AXIN1 and TCF4
Authors: Prossomariti Anna , Piazzi Giulia , D'Angelo Leonarda , Miccoli Sara , Turchetti Daniela , Alquati Chiara , Montagna Claudio , Bazzoli Franco , Ricciardiello Luigi
Published: April 2023

miR-155-5p levels and transfection efficiency in CRC cell lines.
Supplementary Figure 1 from The Nuclear Pool of Tetraspanin CD9 Contributes to Mitotic Processes in Human Breast Carcinoma
Authors: Rappa Germana , Green Toni M. , Lorico Aurelio
Published: April 2023

Nuclear localization of CD9 in MA-11 and MCF-7 cells.
Supplementary Figure 1 from Methylation of the HOXA10 Promoter Directs miR-196b-5p–Dependent Cell Proliferation and Invasion of Gastric Cancer Cells
Authors: Shao Linlin , Chen Zheng , Peng Dunfa , Soutto Mohammed , Zhu Shoumin , Bates Andreia , Zhang Shutian , El-Rifai Wael
Published: April 2023

miR-196b-5p and HOXA10 mRNA are upregulated in gastric cancer tissue samples and cell lines.
Supplementary ChIP-seq_GENELIST from SMARCB1 Deficiency Integrates Epigenetic Signals to Oncogenic Gene Expression Program Maintenance in Human Acute Myeloid Leukemia
Authors: Chatterjee Shankha Subhra , Biswas Mayukh , Boila Liberalis Debraj , Banerjee Debasis , Sengupta Amitava
Published: April 2023

Supplementary ChIP-seq_GENELIST
Figure S2 from Somatic Hypermutation of the YAP Oncogene in a Human Cutaneous Melanoma
Authors: Zhang Xiaomeng , Tang Jian Zhong , Vergara Ismael A. , Zhang Youfang , Szeto Pacman , Yang Lie , Mintoff Christopher , Colebatch Andrew , McIntosh Lachlan , Mitchell Katrina A. , Shaw Evangeline , Rizos Helen , Long Georgina V. , Hayward Nicholas , McArthur Grant A. , Papenfuss Anthony T. , Harvey Kieran F. , Shackleton Mark
Published: April 2023

Correlation between mRNA expression and copy number (CN) in the 10 most commonly amplified Hippo pathway genes
Figure S4 from Targeting IDH1 as a Prosenescent Therapy in High-grade Serous Ovarian Cancer
Authors: Dahl Erika S. , Buj Raquel , Leon Kelly E. , Newell Jordan M. , Imamura Yuka , Bitler Benjamin G. , Snyder Nathaniel W. , Aird Katherine M.
Published: April 2023

Knockdown of IDH1 decreases expression of genes related to cell cycle and DNA replication but does not lead to compensation of other IDH family members; knockdown or pharmacological inhibition of IDH1 suppresses proliferation of Ovcar10 HGSC cells. Related to Figure 3.
Supplementary Table 7 from ELF4 Is a Target of miR-124 and Promotes Neuroblastoma Proliferation and Undifferentiated State
Authors: Kosti Adam , Du Liqin , Shivram Haridha , Qiao Mei , Burns Suzanne , Garcia Juan Gabriel , Pertsemlidis Alexander , Iyer Vishwanath R. , Kokovay Erzsebet , Penalva Luiz O.F.
Published: April 2023

Table S7. mSigDB analysis of overlap between miR-124 targets and siELF4 downregulated genes.
Supplemental Figures and Legends from Gamma-Glutamyltransferase 1 Promotes Clear Cell Renal Cell Carcinoma Initiation and Progression
Authors: Bansal Ankita , Sanchez Danielle J. , Nimgaonkar Vivek , Sanchez David , Riscal Romain , Skuli Nicolas , Simon M. Celeste
Published: April 2023

Figure S1: Expression of GSH synthesis enzymes in ccRCC tumors and adjacent healthy kidney tissue, demonstrating increased GGT1 levels in ccRCC. Figure S2: GGT1 mRNA and protein abundance in ccRCC and renal epithelial cell lines. Figure S3: GGT1 inhibition results in proliferation defect in ccRCC cells. Figure S4: GGT1 knockdown results in cell cycle arrest in ccRCC cell lines. Figure S5: GSH levels and GSH/GSSG ratios are reduced in GGT1 KD tumor xenografts, relative to controls. Figure S6: GSH pathway inhibition leads to proliferation defects in ccRCC cells.
Figure S1 from Thymidine Kinase 1 Loss Confers Trifluridine Resistance without Affecting 5-Fluorouracil Metabolism and Cytotoxicity
Authors: Edahiro Keitaro , Iimori Makoto , Kobunai Takashi , Morikawa-Ichinose Tomomi , Miura Daisuke , Kataoka Yuki , Niimi Shinichiro , Wakasa Takeshi , Saeki Hiroshi , Oki Eiji , Kitao Hiroyuki , Maehara Yoshihiko
Published: April 2023

Expression of pyrimidine metabolism-related factors in DLD1 and DLD1-FTD.
Supplementary Table S2 from Runx2 Suppression by miR-342 and miR-363 Inhibits Multiple Myeloma Progression
Authors: Gowda Pramod S. , Wildman Benjamin J. , Trotter Timothy N. , Xu Xiaoxuan , Hao Xiaoxiao , Hassan Mohammad Q. , Yang Yang
Published: April 2023

Antibodies used for Western blotting and FACS.
Supplementary Figure S2 from Runx2 Suppression by miR-342 and miR-363 Inhibits Multiple Myeloma Progression
Authors: Gowda Pramod S. , Wildman Benjamin J. , Trotter Timothy N. , Xu Xiaoxuan , Hao Xiaoxiao , Hassan Mohammad Q. , Yang Yang
Published: April 2023

5TGM1 cells stably overexpressing miR-342 and miR-363 were established by lentiviral vector transduction.
Supplementary Table 1 from LINC00152 Promotes Invasion through a 3′-Hairpin Structure and Associates with Prognosis in Glioblastoma
Authors: Reon Brian J. , Takao Real Karia Bruno , Kiran Manjari , Dutta Anindya
Published: April 2023

Fold changes of indicated genes (log 2) after knockdown or overexpression of LINC00152 or M8.
Supplementary Figure 6 from LINC00152 Promotes Invasion through a 3′-Hairpin Structure and Associates with Prognosis in Glioblastoma
Authors: Reon Brian J. , Takao Real Karia Bruno , Kiran Manjari , Dutta Anindya
Published: April 2023

LINC00152 knockdown leads to changes in gene expression. A) Heatmap showing clustering of replicates from the same condition (with or without LINC00152 knockdown) based on differentially regulated genes in U87 cells. Three biological replicates for each condition are shown to cluster together. Bootstrap values based on 1000 repetitions are shown near to the corresponding branches. B-G) LINC00152 knockdown decreases BCL2L11 expression, but overexpression of LINC000152 or the M8 hairpin does not upregulate BC2L11 expression. B) qRT-PCR showing knockdown of LINC00152 after treatment with two different siRNAs. C) and D) qRT-PCR of BCL2L11 using two different primer pairs after LINC00152 knockdown. E) qRT-PCR shows overexpression of full length LINC00152 or the M8 hairpin alone. F) and G) Same as C) and D) except after overexpression of LINC00152 or M8.
Supplementary Figure 1 from LINC00152 Promotes Invasion through a 3′-Hairpin Structure and Associates with Prognosis in Glioblastoma
Authors: Reon Brian J. , Takao Real Karia Bruno , Kiran Manjari , Dutta Anindya
Published: April 2023

LINC00152 expression level in glioma subtypes and association with patient outcome in different cancers. A-B) LINC00152 is not differentially expressed in LGGs globally or between GBM subtypes. A) Boxplot of LINC00152 expression in normal brain tissue, G2 (grade 2 glioma) and G3 (grade 3 glioma). B) Boxplot of LINC00152 expression in GBM subtypes. C-E) High levels of LINC00152 expression is associated with negative patient outcomes in three more cancers. C-D) Kaplan Meier plots of the top third of LINC00152 expressing patients and the bottom third of LINC00152 expressing patients in renal papillary tumor and pancreatic adenocarcinoma, respectively. E) Kaplan Meier plots of the top quarter of LINC00152 expressing patients and the bottom quarter of LINC00152 expressing patients in acute myeloid leukemia. Hazard ratio is indicated as "HR" and the 95% confidence interval is indicated as "CI".
Supplementary Tables S1 - S11 from Genome Sequencing and RNA-Motif Analysis Reveal Novel Damaging Noncoding Mutations in Human Tumors
Authors: Singh Babita , Trincado Juan L. , Tatlow PJ , Piccolo Stephen R. , Eyras Eduardo
Published: April 2023

Excel (xlsx) file with the supplementary tables referred to in the article.
Supplementary Figures S1 - S20 from Genome Sequencing and RNA-Motif Analysis Reveal Novel Damaging Noncoding Mutations in Human Tumors
Authors: Singh Babita , Trincado Juan L. , Tatlow PJ , Piccolo Stephen R. , Eyras Eduardo
Published: April 2023

PDF file with the supplementary figures cited in the article.
Supplementary Table 2 from Network Inference Analysis Identifies SETDB1 as a Key Regulator for Reverting Colorectal Cancer Cells into Differentiated Normal-Like Cells
Authors: Lee Soobeom , Lee Chansu , Hwang Chae Young , Kim Dongsan , Han Younghyun , Hong Sung Noh , Kim Seok-Hyung , Cho Kwang-Hyun
Published: April 2023

Supplementary Table 2. Adult tissues-associated gene sets used for gene set enrichment analysis
Supplementary Information from Network Inference Analysis Identifies SETDB1 as a Key Regulator for Reverting Colorectal Cancer Cells into Differentiated Normal-Like Cells
Authors: Lee Soobeom , Lee Chansu , Hwang Chae Young , Kim Dongsan , Han Younghyun , Hong Sung Noh , Kim Seok-Hyung , Cho Kwang-Hyun
Published: April 2023

Supplementary Materials and Methods, Supplementary References, Supplementary Figures and Figure Legends (S1-S8), Supplementary Tables (S1-S5)(Supplementary Table 2 is provided as a separate file in a spreadsheet format.)
Supplementary Figure 6 from SPHK1 Is a Novel Target of Metformin in Ovarian Cancer
Authors: Hart Peter C. , Chiyoda Tatsuyuki , Liu Xiaojing , Weigert Melanie , Curtis Marion , Chiang Chun-Yi , Loth Rachel , Lastra Ricardo , McGregor Stephanie M. , Locasale Jason W. , Lengyel Ernst , Romero Iris L.
Published: April 2023

Silencing SPHK1 promotes resistance to metformin-induced cytotoxicity.
Supplementary Figure 5 from SPHK1 Is a Novel Target of Metformin in Ovarian Cancer
Authors: Hart Peter C. , Chiyoda Tatsuyuki , Liu Xiaojing , Weigert Melanie , Curtis Marion , Chiang Chun-Yi , Loth Rachel , Lastra Ricardo , McGregor Stephanie M. , Locasale Jason W. , Lengyel Ernst , Romero Iris L.
Published: April 2023

Metformin prevents nuclear localization of HIF1α in Kuramochi cells.
Supplementary Figure 3 from SPHK1 Is a Novel Target of Metformin in Ovarian Cancer
Authors: Hart Peter C. , Chiyoda Tatsuyuki , Liu Xiaojing , Weigert Melanie , Curtis Marion , Chiang Chun-Yi , Loth Rachel , Lastra Ricardo , McGregor Stephanie M. , Locasale Jason W. , Lengyel Ernst , Romero Iris L.
Published: April 2023

SPHK1 promotes proliferation, migration and clonogenicity in a representative HGSOC cell line.
Supplementary Figure S1 from Expression Profiling of Circulating Microvesicles Reveals Intercellular Transmission of Oncogenic Pathways
Authors: Milani Gloria , Lana Tobia , Bresolin Silvia , Aveic Sanja , Pastò Anna , Frasson Chiara , te Kronnie Geertruy
Published: April 2023

MVs FACS analyses after isolation from K562 cell line culture medium.
Supplementary Data from Expression Profiling of Circulating Microvesicles Reveals Intercellular Transmission of Oncogenic Pathways
Authors: Milani Gloria , Lana Tobia , Bresolin Silvia , Aveic Sanja , Pastò Anna , Frasson Chiara , te Kronnie Geertruy
Published: April 2023

Supplementary Data Legends.
Supplementary Data from Interactions with Muscle Cells Boost Fusion, Stemness, and Drug Resistance of Prostate Cancer Cells
Authors: Uygur Berna , Leikina Evgenia , Melikov Kamran , Villasmil Rafael , Verma Santosh K. , Vary Calvin P.H. , Chernomordik Leonid V.
Published: April 2023

Fig. S1. Western blot analysis of expression PTEN, p53 and androgen receptor (AR) in PC3 and pPCa cells. Fig. S2. mMYO cells cause expansion of subpopulations of PCa cells that are capable of generating non-adherent single-cell clones of PCa cells (tumor spheres). Fig. S3. Flow cytometry analysis data for the cell surface CD 133 expression. Fig. S4. Upregulation of CD133 gene expression in pPCa cells induced by muscle cells (A) or by IL-4/IL-13(B) Fig. S5. The effect of muscle cells on drug resistance of cancer cells assayed from counts of live cells (A -D) and on the expression of EMT markers. Fig. S6. The effects of growing PC3 cells in the conditioned media from (A) cocultured with different muscle cells. Fig. S7. IL-4 and IL-13 generated and released by mMYO in the conditioned media from the co-culturing of PC3 cells and mMYO. Fig. S8. Cell fusion and multinucleation of pPCA cells after co-culturing with either hMYO or pSMC. Fig. S9. FdUrd suppresses cell division. Fig. S10. Co-culturing of pPCa cells with either pSMC or hMYO boosts expression of Syns1 and 1 and Anx A5. Fig. S11. IL-4 and IL-13 promote fusion of pPCa cells.
Figure S6 from Antisecretory Factor–Mediated Inhibition of Cell Volume Dynamics Produces Antitumor Activity in Glioblastoma
Authors: Ilkhanizadeh Shirin , Sabelström Hanna , Miroshnikova Yekaterina A. , Frantz Aaron , Zhu Wen , Idilli Aurora , Lakins Jon N. , Schmidt Christin , Quigley David A. , Fenster Trenten , Yuan Edith , Trzeciak Jacqueline R. , Saxena Supna , Lindberg Olle R. , Mouw Janna K. , Burdick Jason A. , Magnitsky Sergey , Berger Mitchel S. , Phillips Joanna J. , Arosio Daniele , Sun Dandan , Weaver Valerie M. , Weiss William A. , Persson Anders I.
Published: April 2023

Fig. S6. AF peptide have no proliferative effect on pNKCC1 expressing human GBM cells under atmospheric pressure. (A) Adherent human GBM cells show immunoreactivity against an antibody recognizing Thr-phosphorylation site on human NKCC1. (B) AF treatment had no proliferative effects on human GBM5 cells grown under atmospheric pressure.
Figure S4 from Antisecretory Factor–Mediated Inhibition of Cell Volume Dynamics Produces Antitumor Activity in Glioblastoma
Authors: Ilkhanizadeh Shirin , Sabelström Hanna , Miroshnikova Yekaterina A. , Frantz Aaron , Zhu Wen , Idilli Aurora , Lakins Jon N. , Schmidt Christin , Quigley David A. , Fenster Trenten , Yuan Edith , Trzeciak Jacqueline R. , Saxena Supna , Lindberg Olle R. , Mouw Janna K. , Burdick Jason A. , Magnitsky Sergey , Berger Mitchel S. , Phillips Joanna J. , Arosio Daniele , Sun Dandan , Weaver Valerie M. , Weiss William A. , Persson Anders I.
Published: April 2023

Fig. S4. AF treatment results in no changes in body weight for mice xenografted with GBM43 cells and resulted in complete tumor regression in an EGFRvIII-expressing GBM allograft model. (A, B) SPC or Salovum treatment had no effect on body weight in GBM43 xenografts (n=7 for control, n=10 for SPC, and n=5 for Salovum). (C) SPC treatment resulted in complete tumor regression in 5/6 FVBn mice allografted with EGFRvIII and mCherry-expressing mouse GBM cells (dotted line; tumor border). Scale bar 2 mm.
Figure S3 from Antisecretory Factor–Mediated Inhibition of Cell Volume Dynamics Produces Antitumor Activity in Glioblastoma
Authors: Ilkhanizadeh Shirin , Sabelström Hanna , Miroshnikova Yekaterina A. , Frantz Aaron , Zhu Wen , Idilli Aurora , Lakins Jon N. , Schmidt Christin , Quigley David A. , Fenster Trenten , Yuan Edith , Trzeciak Jacqueline R. , Saxena Supna , Lindberg Olle R. , Mouw Janna K. , Burdick Jason A. , Magnitsky Sergey , Berger Mitchel S. , Phillips Joanna J. , Arosio Daniele , Sun Dandan , Weaver Valerie M. , Weiss William A. , Persson Anders I.
Published: April 2023

Fig. S3. AF treatment increases drug uptake resulting in increased survival of GBM43 xenografted mice. (A, B) SPC diet increased uptake and reduced clearance of tail-vein injected gadolinium in mice xenografted with GBM43 cells. (C) Treatment regimen with SPC diet and/or Erlotinib for uptake and survival studies in GBM43 xenografts. (D) SPC treatment increased Erlotinib levels in GBM43 tumors 60 min following a single administration of Erlotinib. (n=4 for control and SPC, *P < 0.05; Student's t-test). (E) Kaplan-Meier (n=8 for all groups, **P < 0.01; Log-rank Mantel-Cox test or One way ANOVA) curve increased survival following SPC and Erlotinib treatment versus Erlotinib alone.
Supplementary Fig. S3 from Paracrine Interaction of Cancer Stem Cell Populations Is Regulated by the Senescence-Associated Secretory Phenotype (SASP)
Authors: Lagunas Angelica M. , Francis Marybeth , Maniar Nisha B. , Nikolova Gergana , Wu Jianchun , Crowe David L.
Published: April 2023

Quantitation of telomere ssDNA in Pot1b+/+;p53+/+, Pot1b+/+;p53-/-, Pot1b-/-;p53+/+, and Pot1b-/-;p53-/- SCC.
Supplementary Fig. S2 from Paracrine Interaction of Cancer Stem Cell Populations Is Regulated by the Senescence-Associated Secretory Phenotype (SASP)
Authors: Lagunas Angelica M. , Francis Marybeth , Maniar Nisha B. , Nikolova Gergana , Wu Jianchun , Crowe David L.
Published: April 2023

Increased proliferation and stem cell expansion in Pot1b-/-;p53-/-epithelium.
Figure S1 from Antisecretory Factor–Mediated Inhibition of Cell Volume Dynamics Produces Antitumor Activity in Glioblastoma
Authors: Ilkhanizadeh Shirin , Sabelström Hanna , Miroshnikova Yekaterina A. , Frantz Aaron , Zhu Wen , Idilli Aurora , Lakins Jon N. , Schmidt Christin , Quigley David A. , Fenster Trenten , Yuan Edith , Trzeciak Jacqueline R. , Saxena Supna , Lindberg Olle R. , Mouw Janna K. , Burdick Jason A. , Magnitsky Sergey , Berger Mitchel S. , Phillips Joanna J. , Arosio Daniele , Sun Dandan , Weaver Valerie M. , Weiss William A. , Persson Anders I.
Published: April 2023

Fig. S1. AF treatment increases ADC in tumor tissues. MR imaging showing an increase of (A) ADC in xenografted mice treated with nasal AF or SPC-diet with corresponding (B) T2w images.
Supplementary Fig. S1 from Paracrine Interaction of Cancer Stem Cell Populations Is Regulated by the Senescence-Associated Secretory Phenotype (SASP)
Authors: Lagunas Angelica M. , Francis Marybeth , Maniar Nisha B. , Nikolova Gergana , Wu Jianchun , Crowe David L.
Published: April 2023

Pot1b-/-;p53+/+ and Pot1b-/-;p53-/- epithelium exhibits telomere DNA damage response.
Supplementary Table S1 from Treating Cancer as an Invasive Species
Authors: Noorbakhsh Javad , Zhao Zi-Ming , Russell James C. , Chuang Jeffrey H.
Published: April 2023

Table S1: (A) Summary of success rates for six mammalian invasive species under different eradication strategies. 95% confidence interval (CI) was calculated using binomial proportion CI with Jeffreys prior; (B) Summary of success rates (Kaplan-Meier five-year survival rates) for different tumor types under different treatment options. 95% CI was calculated using exponential Greenwood CI for Kaplan-Meier estimator and beta product procedure.
Supplementary materias from Precision Oncology beyond Targeted Therapy: Combining Omics Data with Machine Learning Matches the Majority of Cancer Cells to Effective Therapeutics
Authors: Ding Michael Q. , Chen Lujia , Cooper Gregory F. , Young Jonathan D. , Lu Xinghua
Published: April 2023

Supplementary figures and list of tables
Supplementary Methods, Figure Legends, Tables S1 - S2 from Cigarette Smoke Induces Metabolic Reprogramming of the Tumor Stroma in Head and Neck Squamous Cell Carcinoma
Authors: Domingo-Vidal Marina , Whitaker-Menezes Diana , Martos-Rus Cristina , Tassone Patrick , Snyder Christopher M. , Tuluc Madalina , Philp Nancy , Curry Joseph , Martinez-Outschoorn Ubaldo
Published: April 2023

This file contains supplementary methods (exclusively from supplementary data results), figure legends from supplementary figures, and supplementary tables. Supplementary Table S1. Baseline characteristics of human head and neck cancer subjects. Supplementary Table S2. Correlation of MCT4 scoring in cancer-associated stroma of human head and neck cancers (n=36) with immune-rich (>50%) versus immune-poor stroma (<50%) as detailed in methods (p<0.015).
Supplementary Figure S1 from Cigarette Smoke Induces Metabolic Reprogramming of the Tumor Stroma in Head and Neck Squamous Cell Carcinoma
Authors: Domingo-Vidal Marina , Whitaker-Menezes Diana , Martos-Rus Cristina , Tassone Patrick , Snyder Christopher M. , Tuluc Madalina , Philp Nancy , Curry Joseph , Martinez-Outschoorn Ubaldo
Published: April 2023

Figure S1 shows the set up for CSE generation and for co-culture and co-injection experiments.
Figure S2 from Genotoxic Damage Activates the AMPK-α1 Isoform in the Nucleus via Ca2+/CaMKK2 Signaling to Enhance Tumor Cell Survival
Authors: Vara-Ciruelos Diana , Dandapani Madhumita , Gray Alexander , Egbani Ejaife O. , Evans A. Mark , Hardie D. Grahame
Published: April 2023

Supplementary Figure S2: Low concentrations of etoposide activates nuclear AMPK in cells with DNA damage.
Supplementary information from The Antitumor Drugs Trabectedin and Lurbinectedin Induce Transcription-Dependent Replication Stress and Genome Instability
Authors: Tumini Emanuela , Herrera-Moyano Emilia , San Martín-Alonso Marta , Barroso Sonia , Galmarini Carlos M. , Aguilera Andrés
Published: April 2023

Supplementary information contains the supplementary material and methods and the legends of the supplemetary figures.
Supplementary Table S1 from Leptin Signaling Mediates Obesity-Associated CSC Enrichment and EMT in Preclinical TNBC Models
Authors: Bowers Laura W. , Rossi Emily L. , McDonell Shannon B. , Doerstling Steven S. , Khatib Subreen A. , Lineberger Claire G. , Albright Jody E. , Tang Xiaohu , deGraffenried Linda A. , Hursting Stephen D.
Published: April 2023

Concentrations of hormones, adipokines, and cytokines in mouse serum.
Figure S5 from The Antitumor Drugs Trabectedin and Lurbinectedin Induce Transcription-Dependent Replication Stress and Genome Instability
Authors: Tumini Emanuela , Herrera-Moyano Emilia , San Martín-Alonso Marta , Barroso Sonia , Galmarini Carlos M. , Aguilera Andrés
Published: April 2023

DNA damage foci and colony survival after trabectedin treatment in RNase H1-overexpressing cells
Table S4 from BRCA1 through Its E3 Ligase Activity Regulates the Transcription Factor Oct1 and Carbohydrate Metabolism
Authors: Vázquez-Arreguín Karina , Maddox Jessica , Kang Jinsuk , Park Dongju , Cano Reuben R. , Factor Rachel E. , Ludwig Thomas , Tantin Dean
Published: April 2023

Oct1 and BRCA1 staining in breast cancer tissues.
Supplementary Data Legends from BRCA1 through Its E3 Ligase Activity Regulates the Transcription Factor Oct1 and Carbohydrate Metabolism
Authors: Vázquez-Arreguín Karina , Maddox Jessica , Kang Jinsuk , Park Dongju , Cano Reuben R. , Factor Rachel E. , Ludwig Thomas , Tantin Dean
Published: April 2023

Legends for Supplementary Figures S1-S13, and Tables S1-S4
Supplementary Figure 4 from Epigenetic Regulation of Dlg1, via Kaiso, Alters Mitotic Spindle Polarity and Promotes Intestinal Tumorigenesis
Authors: Young Madeleine A. , May Stephanie , Damo Angelos , Yoon Young So , Hur Man-Wook , Swat Wojiech , Parry Lee
Published: April 2023

Intestinal samples from Dlg1ï�„IEC/ï�„IEC (black bars) show significantly reduced Dlg1 expression compared to Wildtype (grey bars), but there is no significant changes in expression levels of other Dlg family members.
Supplementary Figure S5 from Functional Toll-like Receptor 4 Overexpression in Papillary Thyroid Cancer by MAPK/ERK–Induced ETS1 Transcriptional Activity
Authors: Peyret Victoria , Nazar Magalí , Martín Mariano , Quintar Amado A. , Fernandez Elmer A. , Geysels Romina C. , Fuziwara Cesar S. , Montesinos María M. , Maldonado Cristina A. , Santisteban Pilar , Kimura Edna T. , Pellizas Claudia G. , Nicola Juan P. , Masini-Repiso Ana M.
Published: April 2023

MAPK/ERK signaling inhibition repressed BRAFV600E-induced TLR4 expression at the plasma membrane.
Supplementary Materials and Methods from Adaptive Protein Translation by the Integrated Stress Response Maintains the Proliferative and Migratory Capacity of Lung Adenocarcinoma Cells
Authors: Albert Alexandra E. , Adua Sally J. , Cai Wesley L. , Arnal-Estapé Anna , Cline Gary W. , Liu Zongzhi , Zhao Minghui , Cao Paul D. , Mariappan Malaiyalam , Nguyen Don X.
Published: April 2023

This file includes text for supplementary materials and Methods.
Supplementary Data, Figure S1 - S3 from The SIAH1–HIPK2–p53ser46 Damage Response Pathway is Involved in Temozolomide-Induced Glioblastoma Cell Death
Authors: He Yang , Roos Wynand P. , Wu Qianchao , Hofmann Thomas G. , Kaina Bernd
Published: April 2023

Figure S1: HIPK2 does not affect TMZ-induced senescence. Figure S2: HIPK2 does not contribute to CCNU-induced apoptosis. Figure S3: Expression of HIPK2 in LN-229 cells following treatment with TMZ in the absence and presence of the ATM inhibitor KU-60019 (AstraZeneca), the ATR inhibitor VE821 (Selleckchem) and both.
Figure S7 from Adaptive Protein Translation by the Integrated Stress Response Maintains the Proliferative and Migratory Capacity of Lung Adenocarcinoma Cells
Authors: Albert Alexandra E. , Adua Sally J. , Cai Wesley L. , Arnal-Estapé Anna , Cline Gary W. , Liu Zongzhi , Zhao Minghui , Cao Paul D. , Mariappan Malaiyalam , Nguyen Don X.
Published: April 2023

This figure shows how dietary asparagine limitation combined with ISR inhibition delays LUAD growth in vivo.
Figure S3 from Deciphering the Role of Protein Kinase D1 (PKD1) in Cellular Proliferation
Authors: Youssef Ilige , Ricort Jean-Marc
Published: April 2023

mRNA level of PKD1 expression from head and neck squamous cell cancer (top) and kidney renal papillary cell cancer (bottom) TCGA data
Figure S2 from Competitive Kinase Enrichment Proteomics Reveals that Abemaciclib Inhibits GSK3β and Activates WNT Signaling
Authors: Cousins Emily M. , Goldfarb Dennis , Yan Feng , Roques Jose , Darr David , Johnson Gary L. , Major Michael B.
Published: April 2023

Abemeciclib competitive MIB/MS TMT dose response
Supplementary Methods from Overt Increase of Oxidative Stress and DNA Damage in Murine and Human Colitis and Colitis-Associated Neoplasia
Authors: Frick Adrian , Khare Vineeta , Paul Gregor , Lang Michaela , Ferk Franziska , Knasmüller Siegfried , Beer Andrea , Oberhuber Georg , Gasche Christoph
Published: April 2023

Supplementary Methods
Supplemental Figure 1 from Clusterin, a Novel DEC1 Target, Modulates DNA Damage–Mediated Cell Death
Authors: Ming Xin , Bao Chenyi , Hong Tao , Yang Ying , Chen Xinbin , Jung Yong-Sam , Qian Yingjuan
Published: April 2023

Figure S1. sCLU contributes to DEC1 inhibition on DNA damage induced cell death. A, Western blot samples were prepared from MCF7-DEC1-6 cells transfected with scramble siRNA or sCLU siRNA for 48 hours then uninduced or induced to express DEC1 for 12 hours along with mock or CPT (1 mM) treatment for 48 hours. B, DNA histogram analysis was performed with MCF7-DEC1-6 cells. The assay is described in Experimental Procedures (mean SD; n=3). Data are representative of three independent experiments performed in triplicate.
Supplemental Figures 1-4 and Supplemental Table 1 from HIF Inactivation of p53 in Ovarian Cancer Can Be Reversed by Topotecan, Restoring Cisplatin and Paclitaxel Sensitivity
Authors: Parmakhtiar Basmina , Burger Robert A. , Kim Jai-Hyun , Fruehauf John P.
Published: April 2023

Supplemental Figure 1. Effect of TPT on VEGF levels in ovarian cancer cell Lines. Supplemental Figure 2. P53 knockdown reverses topotecan effects on downstream levels of p53 target transcripts BAX, CDKN1A, GADD45, and Thbs1. Supplemental Figure 3. TPT dose response for CAOV3, TOV112D, and CAOV4 cells treated with topotecan for 72 hours +/- hypoxia and tested for proliferation inhibition using the XTT assay. Supplemental Figure 4. Confirmation that free TOPO1 bound to HIF-1α mRNA in solution. Supplemental Table 1. OC cell line expression levels of TOPO1 determined by western blotting as the ratio of TOPO1 to actin band density read on a Kodak 2000MM photoimager.
Supplementary Figure S3 from Cortactin Phosphorylation by Casein Kinase 2 Regulates Actin-Related Protein 2/3 Complex Activity, Invadopodia Function, and Tumor Cell Invasion
Authors: Markwell Steven M. , Ammer Amanda G. , Interval Erik T. , Allen Jessica L. , Papenberg Brenen W. , Hames River A. , Castaño Johnathan E. , Schafer Dorothy A. , Weed Scott A.
Published: April 2023

phospho-AKT Western blot analysis in MDA1586, OSC19, and UMSCC1 cells.
Supplementary Figure S1 from Cortactin Phosphorylation by Casein Kinase 2 Regulates Actin-Related Protein 2/3 Complex Activity, Invadopodia Function, and Tumor Cell Invasion
Authors: Markwell Steven M. , Ammer Amanda G. , Interval Erik T. , Allen Jessica L. , Papenberg Brenen W. , Hames River A. , Castaño Johnathan E. , Schafer Dorothy A. , Weed Scott A.
Published: April 2023

Invadopodia analysis of OSC19 and UMSCC1 cells expressing cortactin T24 mutants.
Table S3 from High Prevalence of a Hotspot of Noncoding Somatic Mutations in Intron 6 of GPR126 in Bladder Cancer
Authors: Garinet Simon , Pignot Géraldine , Vacher Sophie , Le Goux Constance , Schnitzler Anne , Chemlali Walid , Sirab Nanor , Barry Delongchamps Nicolas , Zerbib Marc , Sibony Mathilde , Allory Yves , Damotte Diane , Bieche Ivan
Published: April 2023

Relationship between GPR126 transcript level and standard clinical pathological and biological parameters in MIBC
Figure S1 from AP-1 Signaling by Fra-1 Directly Regulates HMGA1 Oncogene Transcription in Triple-Negative Breast Cancers
Authors: Tolza Claire , Bejjani Fabienne , Evanno Emilie , Mahfoud Samantha , Moquet-Torcy Gabriel , Gostan Thierry , Maqbool Muhammad Ahmad , Kirsh Olivier , Piechaczyk Marc , Jariel-Encontre Isabelle
Published: April 2023

Relative Fos family members and HMGA1 mRNAs levels in breast cancer cell lines and relative Fra-1 and Fra-2 protein levels in MDA-MB-231 cells
Figure S7 from Desmoglein 1 Regulates Invadopodia by Suppressing EGFR/Erk Signaling in an Erbin-Dependent Manner
Authors: Valenzuela-Iglesias Alejandra , Burks Hope E. , Arnette Christopher R. , Yalamanchili Amulya , Nekrasova Oxana , Godsel Lisa M. , Green Kathleen J.
Published: April 2023

Supplemental Figure 7: Reduction of Dsg1 mRNA and elevation of Dsg2 mRNA is associated with progression of HNSCC in vivo.
Table S2 from Differential Regulation of LET-7 by LIN28B Isoform–Specific Functions
Authors: Mizuno Rei , Chatterji Priya , Andres Sarah , Hamilton Kathryn , Simon Lauren , Foley Shawn W. , Jeganathan Arjun , Gregory Brian D. , Madison Blair , Rustgi Anil K.
Published: April 2023

Antibody List
Supplementary Figure S1 from Differential Regulation of LET-7 by LIN28B Isoform–Specific Functions
Authors: Mizuno Rei , Chatterji Priya , Andres Sarah , Hamilton Kathryn , Simon Lauren , Foley Shawn W. , Jeganathan Arjun , Gregory Brian D. , Madison Blair , Rustgi Anil K.
Published: April 2023

LIN28B short isoform in Huh7.5 cell
Supplementary Data 2 from Prostate Cancer in World Trade Center Responders Demonstrates Evidence of an Inflammatory Cascade
Authors: Gong Yixuan , Wang Li , Yu Haocheng , Alpert Naomi , Cohen Mitchell D. , Prophete Colette , Horton Lori , Sisco Maureen , Park Sung-Hyun , Lee Hyun-Wook , Zelikoff Judith , Chen Lung-Chi , Hashim Dana , Suarez-Farinas Mayte , Donovan Michael J. , Aaronson Stuart A. , Galsky Matthew , Zhu Jun , Taioli Emanuela , Oh William K.
Published: April 2023

List of genes used in cell type enrichment analysis
Supplementary Data 1 from Prostate Cancer in World Trade Center Responders Demonstrates Evidence of an Inflammatory Cascade
Authors: Gong Yixuan , Wang Li , Yu Haocheng , Alpert Naomi , Cohen Mitchell D. , Prophete Colette , Horton Lori , Sisco Maureen , Park Sung-Hyun , Lee Hyun-Wook , Zelikoff Judith , Chen Lung-Chi , Hashim Dana , Suarez-Farinas Mayte , Donovan Michael J. , Aaronson Stuart A. , Galsky Matthew , Zhu Jun , Taioli Emanuela , Oh William K.
Published: April 2023

Difference in gene expression between archived WTC and non WTC cases
Table S3 from Population-dependent Intron Retention and DNA Methylation in Breast Cancer
Authors: Kim Dongwook , Shivakumar Manu , Han Seonggyun , Sinclair Michael S. , Lee Young-Ji , Zheng Yonglan , Olopade Olufunmilayo I. , Kim Dokyoon , Lee Younghee
Published: April 2023

Fifteen events displaying statistically significant IR expression correlation with methylation
Figure S2 from Population-dependent Intron Retention and DNA Methylation in Breast Cancer
Authors: Kim Dongwook , Shivakumar Manu , Han Seonggyun , Sinclair Michael S. , Lee Young-Ji , Zheng Yonglan , Olopade Olufunmilayo I. , Kim Dokyoon , Lee Younghee
Published: April 2023

Differential expression of 44 significant retained introns between races and four subtypes
Supplemental Data, Figures, and Table from Cyclooxygenase-2 Inhibition Potentiates the Efficacy of Vascular Endothelial Growth Factor Blockade and Promotes an Immune Stimulatory Microenvironment in Preclinical Models of Pancreatic Cancer
Authors: Zhang Yuqing , Kirane Amanda , Huang Huocong , Sorrelle Noah B. , Burrows Francis J. , Dellinger Michael T. , Brekken Rolf A.
Published: April 2023

Supplementary Figure 1. (a) Representative images of metastasis to the liver of control mice in Colo357 model was shown by H&E staining. Total magnifications are 100X and 200X. Scale bar, 50Î¼m. (b) Colo357 human pancreatic cancer cells (1 Ã— 106) were injected orthotopically into the pancreas of SCID mice. Treatment began when the established tumor was visible by ultrasound, and consisted of control (saline, n = 6), gemcitabine 25 mg/kg twice weekly plus erlotinib 100 Î¼g daily (standard of care, n = 6) as described in Kirane et al. (29), or mcr84 plus apricoxib (n = 10) and continued for 3 weeks. Tumor weight was normalized to the control and data from the treatment groups were compared. Data are displayed as mean {plus minus} SEM. *P < 0.05 vs. control, by ANOVA with Dunn's MCT. Supplementary Figure 2. Human pancreatic cancer cell lines, Colo357 (a) and AsPc-1 (b) were plated either under normal conditions or under conditions of forced EMT (treated with 20 ng/mL TGFÎ² on collagen I -coated plates for 72 hours). PGE2 levels were measured by ELISA after 500 nM apricoxib treatment. (c) Colo357 and AsPC-1 cells were plated under normal conditions or conditions of forced EMT (50 ng/ml TGFÎ² on collagen I -coated plates for 24 hours). Lysates were probed for the indicated targets by Western blotting. The induced EMT conditions promoted loss of E-Cadherin, gain of Vimentin expression. In Colo357, the expression of N-Cadherin was also upregulated by collagen I and TGFÎ² stimulation. Î²-actin was used as a loading control. Supplementary Figure 3. Microvessel density is not decreased by COX-2 inhibition. Supplementary Figure 4. KIC pancreatic tissues from the treated mice were subjected to immunohistochemistry Supplementary Figure 5. Anti-VEGF therapy results in reduced microvessel density, hypoxia induced TGFÎ² expression, epithelial plasticity and enhanced collagen deposition Table S1: List of antibodies
Supplemental Table 6 from Epigenetic Targeting of Adipocytes Inhibits High-Grade Serous Ovarian Cancer Cell Migration and Invasion
Authors: Tang Jessica , Pulliam Nicholas , Özeş Ali , Buechlein Aaron , Ding Ning , Keer Harold , Rusch Doug , O'Hagan Heather , Stack M. Sharon , Nephew Kenneth P.
Published: April 2023

RNA-seq IPA analysis and gene list of adipocytes cocultured with OVCAR5-RFP cells
Supplemental Table 2 from Epigenetic Targeting of Adipocytes Inhibits High-Grade Serous Ovarian Cancer Cell Migration and Invasion
Authors: Tang Jessica , Pulliam Nicholas , Özeş Ali , Buechlein Aaron , Ding Ning , Keer Harold , Rusch Doug , O'Hagan Heather , Stack M. Sharon , Nephew Kenneth P.
Published: April 2023

Mecap-Seq genes altered by guadecitabine_FC 10, FDR 0.05
Supplementary Data from Evaluation of Tumor Cell–Tumor Microenvironment Component Interactions as Potential Predictors of Patient Response to Napabucasin
Authors: Chang An-Yun , Hsu Eric , Patel Jaimin , Li Yiqun , Zhang Minjie , Iguchi Haruhisa , Rogoff Harry A.
Published: April 2023

Supplemental Methods
Supplementary Data from GSK2801, a BAZ2/BRD9 Bromodomain Inhibitor, Synergizes with BET Inhibitors to Induce Apoptosis in Triple-Negative Breast Cancer
Authors: Bevill Samantha M. , Olivares-Quintero Jose F. , Sciaky Noah , Golitz Brian T. , Singh Darshan , Beltran Adriana S. , Rashid Naim U. , Stuhlmiller Timothy J. , Hale Andrew , Moorman Nathaniel J. , Santos Charlene M. , Angus Steven P. , Zawistowski Jon S. , Johnson Gary L.
Published: April 2023

Supplemental figures, figure legends, table legends, methods, and references
Supplementary Data File 1 from GSK2801, a BAZ2/BRD9 Bromodomain Inhibitor, Synergizes with BET Inhibitors to Induce Apoptosis in Triple-Negative Breast Cancer
Authors: Bevill Samantha M. , Olivares-Quintero Jose F. , Sciaky Noah , Golitz Brian T. , Singh Darshan , Beltran Adriana S. , Rashid Naim U. , Stuhlmiller Timothy J. , Hale Andrew , Moorman Nathaniel J. , Santos Charlene M. , Angus Steven P. , Zawistowski Jon S. , Johnson Gary L.
Published: April 2023

File contains information on small molecules included in screening library
Table S1 from Elevated miR-182-5p Associates with Renal Cancer Cell Mitotic Arrest through Diminished MALAT-1 Expression
Authors: Kulkarni Priyanka , Dasgupta Pritha , Bhat Nadeem S. , Shahryari Varahram , Shiina Marisa , Hashimoto Yutaka , Majid Shahana , Deng Guoren , Saini Sharanjot , Tabatabai Z. Laura , Yamamura Soichiro , Tanaka Yuichiro , Dahiya Rajvir
Published: April 2023

Table S1 is for primer sequences
Figure S2 from Elevated miR-182-5p Associates with Renal Cancer Cell Mitotic Arrest through Diminished MALAT-1 Expression
Authors: Kulkarni Priyanka , Dasgupta Pritha , Bhat Nadeem S. , Shahryari Varahram , Shiina Marisa , Hashimoto Yutaka , Majid Shahana , Deng Guoren , Saini Sharanjot , Tabatabai Z. Laura , Yamamura Soichiro , Tanaka Yuichiro , Dahiya Rajvir
Published: April 2023

Figure S2 depicts the significantly de-regulated pathways based on KEGG and Reactome
Supplementary Figure S5 from PTEN Regulates Nonhomologous End Joining By Epigenetic Induction of NHEJ1/XLF
Authors: Sulkowski Parker L. , Scanlon Susan E. , Oeck Sebastian , Glazer Peter M.
Published: April 2023

Additional Characterization of PTEN K128R
Supplementary Figure S3 from PTEN Regulates Nonhomologous End Joining By Epigenetic Induction of NHEJ1/XLF
Authors: Sulkowski Parker L. , Scanlon Susan E. , Oeck Sebastian , Glazer Peter M.
Published: April 2023

Additional TGCA Analysis and Additional XLF levels in Melanocytes and HCT116 cells
Figure S2 from CRISPR Editing of Mutant IDH1 R132H Induces a CpG Methylation-Low State in Patient-Derived Glioma Models of G-CIMP
Authors: Moure Casey J. , Diplas Bill H. , Chen Lee H. , Yang Rui , Pirozzi Christopher J. , Wang Zhaohui , Spasojevic Ivan , Waitkus Matthew S. , He Yiping , Yan Hai
Published: April 2023

Supplementary Sanger Traces
Supplementary Statistics from TANKYRASE Inhibition Enhances the Antiproliferative Effect of PI3K and EGFR Inhibition, Mutually Affecting β-CATENIN and AKT Signaling in Colorectal Cancer
Authors: Solberg Nina T. , Waaler Jo , Lund Kaja , Mygland Line , Olsen Petter A. , Krauss Stefan
Published: April 2023

Statistical p-values of the comparisons performed during the in vitro part of the study.
Supplementary Figure 3 from Ovarian Tumor Cell Expression of Claudin-4 Reduces Apoptotic Response to Paclitaxel
Authors: Breed Christopher , Hicks Douglas A. , Webb Patricia G. , Galimanis Carly E. , Bitler Benjamin G. , Behbakht Kian , Baumgartner Heidi K.
Published: April 2023

Annexin V binding in response to CMP and paclitaxel.
Supplementary Table 5 from Outcome-Related Differences in Gene Expression Profiles of High-Grade Serous Ovarian Cancers Following Neoadjuvant Chemotherapy
Authors: Octeau David , Kessous Roy , Klein Kathleen , Kogan Liron , Pelmus Manuella , Ferenczy Alex , Greenwood Celia M.T. , Van Kempen Leon C. , Salvador Shannon , Lau Susie , Tonin Patricia N. , Yasmeen Amber , Gotlieb Walter H.
Published: April 2023

Mutation list
Supplementary Table 4 from Outcome-Related Differences in Gene Expression Profiles of High-Grade Serous Ovarian Cancers Following Neoadjuvant Chemotherapy
Authors: Octeau David , Kessous Roy , Klein Kathleen , Kogan Liron , Pelmus Manuella , Ferenczy Alex , Greenwood Celia M.T. , Van Kempen Leon C. , Salvador Shannon , Lau Susie , Tonin Patricia N. , Yasmeen Amber , Gotlieb Walter H.
Published: April 2023

Differential expression results
Supplementary Table S4 from Nomogram Integrating Genomics with Clinicopathologic Features Improves Prognosis Prediction for Colorectal Cancer
Authors: Xiong Yongfu , You Wenxian , Hou Min , Peng Linglong , Zhou He , Fu Zhongxue
Published: April 2023

Significantly enriched GO and KEGG categories
Supplementary Data Method and Figures from Outcome-Related Differences in Gene Expression Profiles of High-Grade Serous Ovarian Cancers Following Neoadjuvant Chemotherapy
Authors: Octeau David , Kessous Roy , Klein Kathleen , Kogan Liron , Pelmus Manuella , Ferenczy Alex , Greenwood Celia M.T. , Van Kempen Leon C. , Salvador Shannon , Lau Susie , Tonin Patricia N. , Yasmeen Amber , Gotlieb Walter H.
Published: April 2023

Supplementary Figure 1: Log-transformed Quantile-Quantile plots of the Univariate Survival Analysis p-values. P-values derived from the univariate survival analysis of the effects of each individual gene was plotted for each fold in which the analysis took place. The horizontal line at 2.52 represents -log(0.003), which was the cutoff for variable selection in the final modeling of survival in the test cohort. Supplementary Figure 2: Abridged representation of the FOXM1 regulatory network. See references [2-5]
Supplementary Figure S1 and S2 from Nomogram Integrating Genomics with Clinicopathologic Features Improves Prognosis Prediction for Colorectal Cancer
Authors: Xiong Yongfu , You Wenxian , Hou Min , Peng Linglong , Zhou He , Fu Zhongxue
Published: April 2023

Supplementary Figure S1 and S2
Supplementary Table S1 from ETV4 Facilitates Cell-Cycle Progression in Pancreatic Cells through Transcriptional Regulation of Cyclin D1
Authors: Tyagi Nikhil , Deshmukh Sachin K. , Srivastava Sanjeev K. , Azim Shafquat , Ahmad Aamir , AL-Ghadhban Ahmed , Singh Ajay P. , Carter James E. , Wang Bin , Singh Seema
Published: April 2023

List of oligomer sequences.
Table S1 from BRD4 Regulates Metastatic Potential of Castration-Resistant Prostate Cancer through AHNAK
Authors: Shafran Jordan S. , Andrieu Guillaume P. , Györffy Balázs , Denis Gerald V.
Published: April 2023

TCGA repository gene expression data with clinical annotation including pathological TNM, Gleason score and survival times.
Figure S5 from BRD4 Regulates Metastatic Potential of Castration-Resistant Prostate Cancer through AHNAK
Authors: Shafran Jordan S. , Andrieu Guillaume P. , Györffy Balázs , Denis Gerald V.
Published: April 2023

MZ1 at BRD4-selective concentrations does not affect cell viability and inhibits DU 145 cell invasion
Revised Supplementary Tables from ALK Fusion Partners Impact Response to ALK Inhibition: Differential Effects on Sensitivity, Cellular Phenotypes, and Biochemical Properties
Authors: Childress Merrida A. , Himmelberg Stephen M. , Chen Huiqin , Deng Wanleng , Davies Michael A. , Lovly Christine M.
Published: April 2023

Revised Supplementary Tables
Supplementary Table S4 from The Transcription Factor AP4 Promotes Oncogenic Phenotypes and Cisplatin Resistance by Regulating LAPTM4B Expression
Authors: Wang Lu , Meng Yue , Xu Jian-Jun , Zhang Qing-Yun
Published: April 2023

Supplementary Table S4 shows the potential transcription factors binding to the polymorphic region of LAPTM4B*2.
Supplementary Table S3 from The Transcription Factor AP4 Promotes Oncogenic Phenotypes and Cisplatin Resistance by Regulating LAPTM4B Expression
Authors: Wang Lu , Meng Yue , Xu Jian-Jun , Zhang Qing-Yun
Published: April 2023

Supplementary Table S3 shows the potential transcription factors binding to the polymorphic region of LAPTM4B*1.
Supplementary Table 2 from Mitotically-Associated lncRNA (MANCR) Affects Genomic Stability and Cell Division in Aggressive Breast Cancer
Authors: Tracy Kirsten M. , Tye Coralee E. , Ghule Prachi N. , Malaby Heidi L.H. , Stumpff Jason , Stein Janet L. , Stein Gary S. , Lian Jane B.
Published: April 2023

Gene set enrichment analysis of genes differentially expressed between control and MANCR knock down cells, and MCF-10A and MDA-MB-231 cells.