bluuebunny/crossref_metadata_2025 huggingface dataset:
Auditory-nerve responses predict pitch attributes related to musical consonance-dissonance for normal and impaired hearing
Authors: Bidelman Gavin M. , Heinz Michael G.
Published: September 2011

Human listeners prefer consonant over dissonant musical intervals and the perceived contrast between these classes is reduced with cochlear hearing loss. Population-level activity of normal and impaired model auditory-nerve (AN) fibers was examined to determine (1) if peripheral auditory neurons exhibit correlates of consonance and dissonance and (2) if the reduced perceptual difference between these qualities observed for hearing-impaired listeners can be explained by impaired AN responses. In addition, acoustical correlates of consonance-dissonance were also explored including periodicity and roughness. Among the chromatic pitch combinations of music, consonant intervals/chords yielded more robust neural pitch-salience magnitudes (determined by harmonicity/periodicity) than dissonant intervals/chords. In addition, AN pitch-salience magnitudes correctly predicted the ordering of hierarchical pitch and chordal sonorities described by Western music theory. Cochlear hearing impairment compressed pitch salience estimates between consonant and dissonant pitch relationships. The reduction in contrast of neural responses following cochlear hearing loss may explain the inability of hearing-impaired listeners to distinguish musical qualia as clearly as normal-hearing individuals. Of the neural and acoustic correlates explored, AN pitch salience was the best predictor of behavioral data. Results ultimately show that basic pitch relationships governing music are already present in initial stages of neural processing at the AN level.
Observationally constrained modeling of sound in curved ocean internal waves: Examination of deep ducting and surface ducting at short range
Authors: Duda Timothy F. , Lin Ying-Tsong , Reeder D. Benjamin
Published: September 2011

A study of 400 Hz sound focusing and ducting effects in a packet of curved nonlinear internal waves in shallow water is presented. Sound propagation roughly along the crests of the waves is simulated with a three-dimensional parabolic equation computational code, and the results are compared to measured propagation along fixed 3 and 6 km source/receiver paths. The measurements were made on the shelf of the South China Sea northeast of Tung-Sha Island. Construction of the time-varying three-dimensional sound-speed fields used in the modeling simulations was guided by environmental data collected concurrently with the acoustic data. Computed three-dimensional propagation results compare well with field observations. The simulations allow identification of time-dependent sound forward scattering and ducting processes within the curved internal gravity waves. Strong acoustic intensity enhancement was observed during passage of high-amplitude nonlinear waves over the source/receiver paths, and is replicated in the model. The waves were typical of the region (35 m vertical displacement). Two types of ducting are found in the model, which occur asynchronously. One type is three-dimensional modal trapping in deep ducts within the wave crests (shallow thermocline zones). The second type is surface ducting within the wave troughs (deep thermocline zones).
Phonation threshold pressure: Comparison of calculations and measurements taken with physical models of the vocal fold mucosa
Authors: Fulcher Lewis P. , Scherer Ronald C.
Published: September 2011

In an important paper on the physics of small amplitude oscillations, Titze showed that the essence of the vertical phase difference, which allows energy to be transferred from the flowing air to the motion of the vocal folds, could be captured in a surface wave model, and he derived a formula for the phonation threshold pressure with an explicit dependence on the geometrical and biomechanical properties of the vocal folds. The formula inspired a series of experiments [e.g., R. Chan and I. Titze, J. Acoust. Soc. Am 119, 2351–2362 (2006)]. Although the experiments support many aspects of Titze’s formula, including a linear dependence on the glottal half-width, the behavior of the experiments at the smallest values of this parameter is not consistent with the formula. It is shown that a key element for removing this discrepancy lies in a careful examination of the properties of the entrance loss coefficient. In particular, measurements of the entrance loss coefficient at small widths done with a physical model of the glottis (M5) show that this coefficient varies inversely with the glottal width. A numerical solution of the time-dependent equations of the surface wave model shows that adding a supraglottal vocal tract lowers the phonation threshold pressure by an amount approximately consistent with Chan and Titze’s experiments.
Soundscape evaluations in two critical healthcare settings with different designs
Authors: Okcu Selen , Ryherd Erica E. , Zimring Craig , Samuels Owen
Published: September 2011

Intensive care units (ICUs) have important but challenging sound environments. Alarms and equipment generate high levels of noise and ICUs are typically designed with hard surfaces. A poor sound environment can add to stress and make auditory tasks more difficult for clinicians. However few studies have linked more detailed analyses of the sound environment to nurse wellbeing and performance. This study is aimed at understanding the relationships between objective acoustic measures and self-reported nurse outcomes. Two 20-bed ICUs with similar patient acuity and treatment models were tested: A recently built neurological ICU and a 1980s-era medical-surgical ICU. The medical-surgical ICU was perceived as louder, more annoying, and having a greater negative impact of noise on work performance, health outcomes, and anxiety as compared to the neurological ICU. Surprisingly, there were little differences between two ICU sound environments based on traditional overall noise measures. The objective differences between the occupied sound environments in the two units only emerged through a more comprehensive analysis of the “occurrence rate” of peak and maximum levels, frequency content, and the speech interference level. Furthermore, mid-level transient sound occurrence rates were significantly and positively correlated to perceived annoyance and loudness levels.
Fluid coupling in a discrete model of cochlear mechanics
Authors: Elliott Stephen J. , Lineton Ben , Ni Guangjian
Published: September 2011

A discrete model of cochlear mechanics is introduced that includes a full, three-dimensional, description of fluid coupling. This formulation allows the fluid coupling and basilar membrane dynamics to be analyzed separately and then coupled together with a simple piece of linear algebra. The fluid coupling is initially analyzed using a wavenumber formulation and is separated into one component due to one-dimensional fluid coupling and one comprising all the other contributions. Using the theory of acoustic waves in a duct, however, these two components of the pressure can also be associated with a far field, due to the plane wave, and a near field, due to the evanescent, higher order, modes. The near field components are then seen as one of a number of sources of additional longitudinal coupling in the cochlea. The effects of non-uniformity and asymmetry in the fluid chamber areas can also be taken into account, to predict both the pressure difference between the chambers and the mean pressure. This allows the calculation, for example, of the effect of a short cochlear implant on the coupled response of the cochlea.
Can basic auditory and cognitive measures predict hearing-impaired listeners’ localization and spatial speech recognition abilities?
Authors: Neher Tobias , Laugesen Søren , Søgaard Jensen Niels , Kragelund Louise
Published: September 2011

This study aimed to clarify the basic auditory and cognitive processes that affect listeners’ performance on two spatial listening tasks: sound localization and speech recognition in spatially complex, multi-talker situations. Twenty-three elderly listeners with mild-to-moderate sensorineural hearing impairments were tested on the two spatial listening tasks, a measure of monaural spectral ripple discrimination, a measure of binaural temporal fine structure (TFS) sensitivity, and two (visual) cognitive measures indexing working memory and attention. All auditory test stimuli were spectrally shaped to restore (partial) audibility for each listener on each listening task. Eight younger normal-hearing listeners served as a control group. Data analyses revealed that the chosen auditory and cognitive measures could predict neither sound localization accuracy nor speech recognition when the target and maskers were separated along the front-back dimension. When the competing talkers were separated along the left-right dimension, however, speech recognition performance was significantly correlated with the attentional measure. Furthermore, supplementary analyses indicated additional effects of binaural TFS sensitivity and average low-frequency hearing thresholds. Altogether, these results are in support of the notion that both bottom-up and top-down deficits are responsible for the impaired functioning of elderly hearing-impaired listeners in cocktail party-like situations.
Acceptable range of speech level in noisy sound fields for young adults and elderly persons
Authors: Sato Hayato , Morimoto Masayuki , Ota Ryo
Published: September 2011

The acceptable range of speech level as a function of background noise level was investigated on the basis of word intelligibility scores and listening difficulty ratings. In the present study, the acceptable range is defined as the range that maximizes word intelligibility scores and simultaneously does not cause a significant increase in listening difficulty ratings from the minimum ratings. Listening tests with young adult and elderly listeners demonstrated the following. (1) The acceptable range of speech level for elderly listeners overlapped that for young listeners. (2) The lower limit of the acceptable speech level for both young and elderly listeners was 65 dB (A-weighted) for noise levels of 40 and 45 dB (A-weighted), a level with a speech-to-noise ratio of +15 dB for noise levels of 50 and 55 dB, and a level with a speech-to-noise ratio of +10 dB for noise levels from 60 to 70 dB. (3) The upper limit of the acceptable speech level for both young and elderly listeners was 80 dB for noise levels from 40 to 55 dB and 85 dB or above for noise levels from 55 to 70 dB.
Perceived tonal continuity through two noise bursts separated by silence
Authors: Haywood Nicholas R. , Julie Chang I-Chu , Ciocca Valter
Published: September 2011

Three experiments measured the perceived continuity of two pure tones “flankers” through a masker containing a silence. Experiment 1 used a 2I-2AFC procedure; one interval contained two noise bursts separated by a silent gap, and the other contained two noise bursts separated by a tone of the same duration as the silence. Discrimination between masker conditions was very accurate when the flankers were absent but was impaired substantially when the flankers were present. This was taken as evidence that illusory flanker continuity during the silent gap was heard as similar to the physical presence of a tone in the gap. In experiment 2, performance remained poor when the flankers were frequency glides aligned along a common trajectory. Performance improved significantly when the flankers were misaligned in trajectory. In experiment 3, listeners rated directly perceived flanker continuity. Strong continuity was reported in the silent gap conditions for which poor performance had been observed in experiments 1 and 2. These findings show that continuity may be heard through a masker that cannot mask a physically continuous tone but can mask the flankers’ offset and onset. The results are explained in terms of the perceptual grouping of onsets and offsets of the flankers.
Second-language experience and speech-in-noise recognition: Effects of talker–listener accent similarity
Authors: Pinet Melanie , Iverson Paul , Huckvale Mark
Published: September 2011

Previous work has shown that the intelligibility of speech in noise is degraded if the speaker and listener differ in accent, in particular when there is a disparity between native (L1) and nonnative (L2) accents. This study investigated how this talker–listener interaction is modulated by L2 experience and accent similarity. L1 Southern British English, L1 French listeners with varying L2 English experience, and French–English bilinguals were tested on the recognition of English sentences mixed in speech-shaped noise that was spoken with a range of accents (French, Korean, Northern Irish, and Southern British English). The results demonstrated clear interactions of accent and experience, with the least experienced French speakers being most accurate with French-accented English, but more experienced listeners being most accurate with L1 Southern British English accents. An acoustic similarity metric was applied to the speech productions of the talkers and the listeners, and significant correlations were obtained between accent similarity and sentence intelligibility for pairs of individuals. Overall, the results suggest that L2 experience affects talker–listener accent interactions, altering both the intelligibility of different accents and the selectivity of accent processing.
Interaction of emitted sonar pulses and simulated echoes in a false killer whale: An evoked-potential study
Authors: Supin Alexander Ya. , Nachtigall Paul E. , Breese Marlee
Published: September 2011

Auditory evoked potentials (AEP) were recorded during echolocation in a false killer whale Pseudorca crassidens. An electronically synthesized and played-back (simulated) echo was triggered by an emitted biosonar pulse, and its intensity was proportional to that of the emitted click. The delay and transfer factor of the echo relative to the emitted click was controlled by the operator. The echo delay varied from 2 to 16 ms (by two-fold steps), and the transfer factor varied within ranges from − 45 to − 30 dB at the 2-ms delay to − 60 to − 45 dB at the 16-ms delay. Echo-related AEPs featured amplitude dependence both on echo delay at a constant transfer factor (the longer the delay, the higher amplitude) and on echo transfer factor at a constant delay (the higher transfer factor, the higher amplitude). Conjunctional variation of the echo transfer factor and delay kept the AEP amplitude constant when the delay to transfer factor trade was from − 7.1 to − 8.4 dB per delay doubling. The results confirm the hypothesis that partial forward masking of the echoes by the preceding emitted sonar pulses serves as a time-varying automatic gain control in the auditory system of echolocating odontocetes.
Fast asymptotic solutions for sound fields above and below a rigid porous ground
Authors: Ming Li Kai , Liu Sheng
Published: September 2011

The current study simultaneously addresses the problem of reflection and refraction of sound from a rigid porous ground surface. A more rigorous approach is used to derive more accurate asymptotic solutions that can be cast in a convenient form for ease of numerical implementations. The solutions provide means for rapid computations of the sound fields above and below the rigid porous ground. The improved asymptotic formulas for both situations agree well with numerical results obtained by other numerical schemes, which are more accurate but computationally more intensive. More importantly, the asymptotic solutions can be written in the well-known form of the Weyl–van der Pol formula, which provides a direct correlation between the reflected wave term for the sound field above the porous ground and the transmitted (refracted) wave term for the sound field below.
Effect of stimulus spectrum on distance perception for nearby sources
Authors: Kopčo Norbert , Shinn-Cunningham Barbara G.
Published: September 2011

The effects of stimulus frequency and bandwidth on distance perception were examined for nearby sources in simulated reverberant space. Sources to the side [containing reverberation-related cues and interaural level difference (ILD) cues] and to the front (without ILDs) were simulated. Listeners judged the distance of noise bursts presented at a randomly roving level from simulated distances ranging from 0.15 to 1.7 m. Six stimuli were tested, varying in center frequency (300–5700 Hz) and bandwidth (200–5400 Hz). Performance, measured as the correlation between simulated and response distances, was worse for frontal than for lateral sources. For both simulated directions, performance was inversely proportional to the low-frequency stimulus cutoff, independent of stimulus bandwidth. The dependence of performance on frequency was stronger for frontal sources. These correlation results were well summarized by considering how mean response, as opposed to response variance, changed with stimulus direction and spectrum: (1) little bias was observed for lateral sources, but listeners consistently overestimated distance for frontal nearby sources; (2) for both directions, increasing the low-frequency cut-off reduced the range of responses. These results are consistent with the hypothesis that listeners used a direction-independent but frequency-dependent mapping of a reverberation-related cue, not the ILD cue, to judge source distance.
Information and linearity of time-domain complex demodulated amplitude and phase data in shallow water
Authors: Sarkar Jit , Cornuelle Bruce D. , Kuperman W. A.
Published: September 2011

Wave-theoretic ocean acoustic propagation modeling is used to derive the sensitivity of pressure, and complex demodulated amplitude and phase, at a receiver to the sound speed of the medium using the Born–Fréchet derivative. Although the procedure can be applied for pressure as a function of frequency instead of time, the time domain has advantages in practical problems, as linearity and signal-to-noise are more easily assigned in the time domain. The linearity and information content of these sensitivity kernels is explored for an example of a 3–4 kHz broadband pulse transmission in a 1 km shallow water Pekeris waveguide. Full-wave observations (pressure as a function of time) are seen to be too nonlinear for use in most practical cases, whereas envelope and phase data have a wider range of validity and provide complementary information. These results are used in simulated inversions with a more realistic sound speed profile, comparing the performance of amplitude and phase observations.
A survey of acoustic conditions in semi-open plan classrooms in the United Kingdom
Authors: Greenland Emma E. , Shield Bridget M.
Published: September 2011

This paper reports the results of a large scale, detailed acoustic survey of 42 open plan classrooms of varying design in the UK each of which contained between 2 and 14 teaching areas or classbases. The objective survey procedure, which was designed specifically for use in open plan classrooms, is described. The acoustic measurements relating to speech intelligibility within a classbase, including ambient noise level, intrusive noise level, speech to noise ratio, speech transmission index, and reverberation time, are presented. The effects on speech intelligibility of critical physical design variables, such as the number of classbases within an open plan unit and the selection of acoustic finishes for control of reverberation, are examined. This analysis enables limitations of open plan classrooms to be discussed and acoustic design guidelines to be developed to ensure good listening conditions. The types of teaching activity to provide adequate acoustic conditions, plus the speech intelligibility requirements of younger children, are also discussed.
High-resolution imaging without iteration: a fast and robust method for breast ultrasound tomography
Authors: Huthwaite P. , Simonetti F.
Published: September 2011

Breast ultrasound tomography has the potential to improve the cost, safety, and reliability of breast cancer screening and diagnosis over the gold-standard of mammography. Vital to achieving this potential is the development of imaging algorithms to unravel the complex anatomy of the breast and its mechanical properties. The solution most commonly relied upon is time-of-flight tomography, but this exhibits low resolution due to the presence of diffraction effects. Iterative full-wave inversion methods present one solution to achieve higher resolution, but these are slow and are not guaranteed to converge to the correct solution. Presented here is HARBUT, the hybrid algorithm for robust breast ultrasound tomography, which utilizes the complementary strengths of time-of-flight and diffraction tomography resulting in a direct, fast, robust and accurate high resolution method of reconstructing the sound speed through the breast. The algorithm is shown to produce accurate reconstructions with realistic data from a complex three-dimensional simulation, with masses as small as 4 mm being clearly visible.
Discrimination between sequential and simultaneous virtual channels with electrical hearing
Authors: Landsberger David , Galvin John J.
Published: September 2011

In cochlear implants (CIs), simultaneous or sequential stimulation of adjacent electrodes can produce intermediate pitch percepts between those of the component electrodes. However, it is unclear whether simultaneous and sequential virtual channels (VCs) can be discriminated. In this study, CI users were asked to discriminate simultaneous and sequential VCs; discrimination was measured for monopolar (MP) and bipolar + 1 stimulation (BP + 1), i.e., relatively broad and focused stimulation modes. For sequential VCs, the interpulse interval (IPI) varied between 0.0 and 1.8 ms. All stimuli were presented at comfortably loud, loudness-balanced levels at a 250 pulse per second per electrode (ppse) stimulation rate. On average, CI subjects were able to reliably discriminate between sequential and simultaneous VCs. While there was no significant effect of IPI or stimulation mode on VC discrimination, some subjects exhibited better VC discrimination with BP + 1 stimulation. Subjects’ discrimination between sequential and simultaneous VCs was correlated with electrode discrimination, suggesting that spatial selectivity may influence perception of sequential VCs. To maintain equal loudness, sequential VC amplitudes were nearly double those of simultaneous VCs, presumably resulting in a broader spread of excitation. These results suggest that perceptual differences between simultaneous and sequential VCs might be explained by differences in the spread of excitation.
Underwater Mach wave radiation from impact pile driving: Theory and observation
Authors: Reinhall Per G. , Dahl Peter H.
Published: September 2011

The underwater noise from impact pile driving is studied using a finite element model for the sound generation and parabolic equation model for propagation. Results are compared with measurements using a vertical line array deployed at a marine construction site in Puget Sound. It is shown that the dominant underwater noise from impact driving is from the Mach wave associated with the radial expansion of the pile that propagates down the pile after impact at supersonic speed. The predictions of vertical arrival angle associated with the Mach cone, peak pressure level as function of depth, and dominant features of the pressure timeseries compare well with corresponding field observations.
Trading detection for resolution in active sonar receivers
Authors: Sharma Nabin S. , Buck John R. , Simmons James A.
Published: September 2011

This paper proposes an active sonar receivers that offers a smooth trade-off between detection and resolution. A matched filter is the optimal detector of known signals in white Gaussian noise but may fail to resolve the targets if the time separation of targets is less than the mainlobe width of the autocorrelation function of the transmitted signal. An inverse filter achieves optimal resolution performance for multiple targets in the absence of noise, but amplifies the noise outside the signal bandwidth in a manner that makes it impractical in many realistic scenarios. The proposed active sonar receiver, the variable resolution and detection receiver (VRDR) combines the matched and inverse filter properties to achieve a smooth trade-off between detection and resolution. Simulated receiver operating characteristics demonstrate that for a range of dipole sonar targets, the performance of the VRDR is superior to the matched and inverse filter, as well as another previously proposed bandlimited inverse filter.
Gain-induced speech distortions and the absence of intelligibility benefit with existing noise-reduction algorithms
Authors: Kim Gibak , Loizou Philipos C.
Published: September 2011

Most noise-reduction algorithms used in hearing aids apply a gain to the noisy envelopes to reduce noise interference. The present study assesses the impact of two types of speech distortion introduced by noise-suppressive gain functions: amplification distortion occurring when the amplitude of the target signal is over-estimated, and attenuation distortion occurring when the target amplitude is under-estimated. Sentences corrupted by steady noise and competing talker were processed through a noise-reduction algorithm and synthesized to contain either amplification distortion, attenuation distortion or both. The attenuation distortion was found to have a minimal effect on speech intelligibility. In fact, substantial improvements (> 80 percentage points) in intelligibility, relative to noise-corrupted speech, were obtained when the processed sentences contained only attenuation distortion. When the amplification distortion was limited to be smaller than 6 dB, performance was nearly unaffected in the steady-noise conditions, but was severely degraded in the competing-talker conditions. Overall, the present data suggest that one reason that existing algorithms do not improve speech intelligibility is because they allow amplification distortions in excess of 6 dB. These distortions are shown in this study to be always associated with masker-dominated envelopes and should thus be eliminated.
Vibrato rate and extent in soprano voice: A survey on one century of singing
Authors: Ferrante Isidoro
Published: September 2011

This work presents a statistical study of vibrato parameters in soprano voices. More than one hundred recordings of the same tone sung by 75 artists have been analyzed. Vibrato rate and extent, tone length and intonation, together with their correlations are the main parameters under examination. The study shows a clear decrease of the mean vibrato rate during the last century (-1.8±0.3 Hz/century), together with an increase of vibrato extent (56.4±0.3cent/century). Vibrato rate and extent show a statistically significant negative correlation (r=-0.62). Vibrato rate increase near the end of the tone has been observed too, in agreement with previous measurements, together with a mean increase of the pitch of the tone. A small positive correlation has been also found among note duration and vibrato extent.
Experimental testing of the noise-canceling processor
Authors: Collins Michael D. , Baer Ralph N. , Simpson Harry J.
Published: September 2011

Signal-processing techniques for localizing an acoustic source buried in noise are tested in a tank experiment. Noise is generated using a discrete source, a bubble generator, and a sprinkler. The experiment has essential elements of a realistic scenario in matched-field processing, including complex source and noise time series in a waveguide with water, sediment, and multipath propagation. The noise-canceling processor is found to outperform the Bartlett processor and provide the correct source range for signal-to-noise ratios below − 10 dB. The multivalued Bartlett processor is found to outperform the Bartlett processor but not the noise-canceling processor.
Effects of locally resonant modes on underwater sound absorption in viscoelastic materials
Authors: Wen Jihong , Zhao Honggang , Lv Linmei , Yuan Bo , Wang Gang , Wen Xisen
Published: September 2011

Recently, by introducing locally resonant scatterers with spherical shape proposed in phononic crystals into design of underwater sound absorption materials, the low-frequency underwater sound absorption phenomenon induced by the localized resonances is observed. To reveal this absorption mechanism, the effect of the locally resonant mode on underwater sound absorption should be studied. In this paper, the finite element method, which is testified efficiently by comparing the calculation results with those of the layer multiple scattering method, is introduced to investigate the dynamic modes and the corresponding sound absorption of localized resonance. The relationship between the resonance modes described with the displacement contours of one unit cell and the corresponding absorption spectra is discussed in detail, which shows that the localized resonance leads to the absorption peak, and the mode conversion from longitudinal to transverse waves at the second absorption peak is more efficient than that at the first one. Finally, to show the modeling capability of FEM and investigate shape effects of locally resonant scatterers on underwater sound absorption, the absorption properties of viscoelastic materials containing locally resonant scatterers with ellipsoidal shape are discussed.
Multiobjective muffler shape optimization with hybrid acoustics modeling
Authors: Airaksinen Tuomas , Heikkola Erkki
Published: September 2011

This paper considers the combined use of a hybrid numerical method for the modeling of acoustic mufflers and a genetic algorithm for multiobjective optimization. The hybrid numerical method provides accurate modeling of sound propagation in uniform waveguides with non-uniform obstructions. It is based on coupling a wave based modal solution in the uniform sections of the waveguide to a finite element solution in the non-uniform component. Finite element method provides flexible modeling of complicated geometries, varying material parameters, and boundary conditions, while the wave based solution leads to accurate treatment of non-reflecting boundaries and straightforward computation of the transmission loss (TL) of the muffler. The goal of optimization is to maximize TL at multiple frequency ranges simultaneously by adjusting chosen shape parameters of the muffler. This task is formulated as a multiobjective optimization problem with the objectives depending on the solution of the simulation model. NSGA-II genetic algorithm is used for solving the multiobjective optimization problem. Genetic algorithms can be easily combined with different simulation methods, and they are not sensitive to the smoothness properties of the objective functions. Numerical experiments demonstrate the accuracy and feasibility of the model-based optimization method in muffler design.
Travel-time tomography in shallow water: Experimental demonstration at an ultrasonic scale
Authors: Roux Philippe , Iturbe Ion , Nicolas Barbara , Virieux Jean , Mars Jérôme I.
Published: September 2011

Acoustic tomography in a shallow ultrasonic waveguide is demonstrated at the laboratory scale between two source–receiver arrays. At a 1/1 000 scale, the waveguide represents a 1.1-km-long, 52-m-deep ocean acoustic channel in the kilohertz frequency range. Two coplanar arrays record the transfer matrix in the time domain of the waveguide between each pair of source–receiver transducers. A time-domain, double-beamforming algorithm is simultaneously performed on the source and receiver arrays that projects the multi-reflected acoustic echoes into an equivalent set of eigenrays, which are characterized by their travel times and their launch and arrival angles. Travel-time differences are measured for each eigenray every 0.1 s when a thermal plume is generated at a given location in the waveguide. Travel-time tomography inversion is then performed using two forward models based either on ray theory or on the diffraction-based sensitivity kernel. The spatially resolved range and depth inversion data confirm the feasibility of acoustic tomography in shallow water. Comparisons are made between inversion results at 1 and 3 MHz with the inversion procedure using ray theory or the finite-frequency approach. The influence of surface fluctuations at the air–water interface is shown and discussed in the framework of shallow-water ocean tomography.
Beamforming with a circular array of microphones mounted on a rigid sphere (L)
Authors: Tiana-Roig Elisabet , Jacobsen Finn , Fernandez-Grande Efren
Published: September 2011

Beamforming with uniform circular microphone arrays can be used for localizing sound sources over 360∘. Typically, the array microphones are suspended in free space or they are mounted on a solid cylinder. However, the cylinder is often considered to be infinitely long because the scattering problem has no exact solution for a finite cylinder. Alternatively one can use a solid sphere. This investigation compares the performance of a circular array mounded on a rigid sphere with that of such an array in free space and mounted on an infinite cylinder, using computer simulations. The examined techniques are delay-and-sum and circular harmonics beamforming, and the results are validated experimentally.
Phonetic variability of stops and flaps in spontaneous and careful speech
Authors: Warner Natasha , Tucker Benjamin V.
Published: September 2011

Variability is perhaps the most notable characteristic of speech, and it is particularly noticeable in spontaneous conversational speech. The current research examines how speakers realize the American English stops /p, k, b, g/ and flaps (ɾ from /t, d/), in casual conversation and in careful speech. Target consonants appear after stressed syllables (e.g., “lobby”) or between unstressed syllables (e.g., “humanity”), in one of six segmental/word-boundary environments. This work documents the degree and types of variability listeners encounter and must parse. Findings show greater reduction in connected and spontaneous speech, greater reduction in high frequency phrases (but not within high frequency words), and greater reduction between unstressed syllables than after a stress. Although highly reduced productions of stops and flaps occur often, with approximant-like tokens even in careful speech, reduction does not lead to a large amount of overlap between phonological categories. Approximant-like realizations of expected stops and flaps in some conditions constitute the majority of tokens. This shows that reduced speech is something that listeners encounter, and must perceive, in a large proportion of the speech they hear.
Range discrimination in ultrasonic vibrometry: Theory and experiment
Authors: Martin J. S. , Rogers P. H. , Gray M. D.
Published: September 2011

A technique has been developed to demodulate periodic broadband ultrasonic interrogation signals that are returned from multiple scattering sites to simultaneously determine the low-frequency displacement time histories of each individual site. The technique employs a broadband periodic transmit signal. The motions of scattering sites are separately determined from the echoed receive signal by an algorithm involving comb filtering and pulse synthesis. This algorithm permits spatial resolution comparable to pulse-echo techniques and displacement sensitivities comparable to pure-tone techniques. A system based on this technique was used to image transient audio-frequency displacements on the order of 1–10 μm peak (≥ 50 nm/Hz) that were produced by propagating shear waves in a tissue phantom. The system used concentric transmitting and receiving transducers and a carrier signal centered at 2.5 MHz with an 800 kHz bandwidth. The system was self-noise-limited and capable of detecting motions of strongly reflecting regions on the order of 1 nm/Hz. System performance is limited by several factors including signal selection, component hardware, and ultrasonic propagation within the media of interest.
Target time smearing with short transmissions and multipath propagation
Authors: Harrison Chris H.
Published: September 2011

In active sonar the target echo level is often estimated with a propagation model that adds all multipath arrivals. If the (post-correlator) transmitted pulse is short compared to the multipath time spread then there is effectively an extra loss (which may be substantial) since only a few of the paths contribute to the target echo at any one instant. This well known “time-smearing” loss is treated in a self-consistent manner with previous calculations of reverberation [Harrison, J. Acoust. Soc. Am. 114, 2744–2756 (2003)] to estimate the target response and the signal-to-reverberation-ratio. Again isovelocity water, Lambert’s law, and reflection loss proportional to angle are assumed. In this important short pulse regime the target response becomes independent of boundary reflection properties but proportional to transmitted pulse length. Thus the signal-to-reverberation-ratio becomes independent of pulse length. The effect on signal-to-ambient-noise is also investigated and the resulting formulas presented in a table.
Generalized acoustic energy density
Authors: Xu Buye , Sommerfeldt Scott D. , Leishman Timothy W.
Published: September 2011

The properties of acoustic kinetic energy density and total energy density of sound fields in lightly damped enclosures have been explored thoroughly in the literature. Their increased spatial uniformity makes them more favorable measurement quantities for various applications than acoustic potential energy density (or squared pressure), which is most often used. In this paper, a generalized acoustic energy density (GED), will be introduced. It is defined by introducing weighting factors into the formulation of total acoustic energy density. With an additional degree of freedom, the GED can conform to the traditional acoustic energy density quantities, or it can be optimized for different applications. The properties of the GED will be explored in this paper for individual room modes, a diffuse sound field, and a sound field below the Schroeder frequency.
Linking Long-Term Dietary Patterns with Gut Microbial Enterotypes
Authors: Wu Gary D. , Chen Jun , Hoffmann Christian , Bittinger Kyle , Chen Ying-Yu , Keilbaugh Sue A. , Bewtra Meenakshi , Knights Dan , Walters William A. , Knight Rob , Sinha Rohini , Gilroy Erin , Gupta Kernika , Baldassano Robert , Nessel Lisa , Li Hongzhe , Bushman Frederic D. , Lewis James D.
Published: September 2011

The basic composition of the human gut microbiome is influenced by long-term diet: high fat and protein versus high fiber.
Implementing the Quantum von Neumann Architecture with Superconducting Circuits
Authors: Mariantoni Matteo , Wang H. , Yamamoto T. , Neeley M. , Bialczak Radoslaw C. , Chen Y. , Lenander M. , Lucero Erik , O’Connell A. D. , Sank D. , Weides M. , Wenner J. , Yin Y. , Zhao J. , Korotkov A. N. , Cleland A. N. , Martinis John M.
Published: September 2011

A quantum version of a central processing unit was created with superconducting circuits and elements.
An Exometabolomics Approach to Monitoring Microbial Contamination in Microalgal Fermentation Processes by Using Metabolic Footprint Analysis
Authors: Sue Tiffany , Obolonkin Victor , Griffiths Hywel , Villas-Bôas Silas Granato
Published: September 2011

The early detection of microbial contamination is crucial to avoid process failure and costly delays in fermentation industries. However, traditional detection methods such as plate counting and microscopy are labor-intensive, insensitive, and time-consuming. Modern techniques that can detect microbial contamination rapidly and cost-effectively are therefore sought. In the present study, we propose gas chromatography-mass spectrometry (GC-MS)-based metabolic footprint analysis as a rapid and reliable method for the detection of microbial contamination in fermentation processes. Our metabolic footprint analysis detected statistically significant differences in metabolite profiles of axenic and contaminated batch cultures of microalgae as early as 3 h after contamination was introduced, while classical detection methods could detect contamination only after 24 h. The data were analyzed by discriminant function analysis and were validated by leave-one-out cross-validation. We obtained a 97% success rate in correctly classifying samples coming from contaminated or axenic cultures. Therefore, metabolic footprint analysis combined with discriminant function analysis presents a rapid and cost-effective approach to monitor microbial contamination in industrial fermentation processes.
Spatial Variations in Archaeal Lipids of Surface Water and Core-Top Sediments in the South China Sea and Their Implications for Paleoclimate Studies
Authors: Wei Yuli , Wang Jinxiang , Liu Jie , Dong Liang , Li Li , Wang Hui , Wang Peng , Zhao Meixun , Zhang Chuanlun L.
Published: September 2011

The South China Sea (SCS) is the largest marginal sea of the western Pacific Ocean, yet little is known about archaeal distributions and TEX
86
-based temperatures in this unique oceanic setting. Here we report findings of abundances in both core lipids (CL) and intact polar lipids (IPL) of
Archaea
from surface water (CL only) and core-top sediments from different regions of the SCS. TEX
86
-derived temperatures were also calculated for these samples. The surface water had extremely low abundances of CL (average of 0.05 ± 0.13 ng/liter;
n
= 75), with higher values present in regions where upwelling is known to occur. The core-top sediments had CL values of 0.1 to 0.9 μg/g, which are on the low end of CL concentrations reported for other marine sediments and may reflect the oligotrophic nature of the open SCS. The IPL of
Archaea
accounted for 6 to 36.4% of total lipids (CL plus IPL), indicating that the majority of archaeal lipids in core-top sediments were derived from nonliving cells. The TEX
86
-based temperatures of surface water were overall lower than satellite-based sea surface temperatures or CTD-measured
in situ
temperatures. The core-top sediment samples, however, had TEX
86
temperatures very close to the mean annual sea surface temperatures, except for samples with water depths of less than 100 m. Our results demonstrated low and heterogeneous distributions of archaeal lipids in surface water and core-top sediments of the SCS, which may reflect local or regional differences in productivity of
Archaea
. While TEX
86
-based temperatures for core-top marine sediments at deep water depths (>100 m) generally reflected mean annual sea surface temperatures, TEX
86
temperatures in surface water varied basin wide and underestimated sea surface temperatures in most locations for the season when surface water samples were collected.
Contribution of a Sodium Ion Gradient to Energy Conservation during Fermentation in the Cyanobacterium Arthrospira (Spirulina) maxima CS-328
Authors: Carrieri Damian , Ananyev Gennady , Lenz Oliver , Bryant Donald A. , Dismukes G. Charles
Published: September 2011

Sodium gradients in cyanobacteria play an important role in energy storage under photoautotrophic conditions but have not been well studied during autofermentative metabolism under the dark, anoxic conditions widely used to produce precursors to fuels. Here we demonstrate significant stress-induced acceleration of autofermentation of photosynthetically generated carbohydrates (glycogen and sugars) to form excreted organic acids, alcohols, and hydrogen gas by the halophilic, alkalophilic cyanobacterium
Arthrospira
(
Spirulina
)
maxima
CS-328. When suspended in potassium versus sodium phosphate buffers at the start of autofermentation to remove the sodium ion gradient, photoautotrophically grown cells catabolized more intracellular carbohydrates while producing 67% higher yields of hydrogen, acetate, and ethanol (and significant amounts of lactate) as fermentative products. A comparable acceleration of fermentative carbohydrate catabolism occurred upon dissipating the sodium gradient via addition of the sodium-channel blocker quinidine or the sodium-ionophore monensin but not upon dissipating the proton gradient with the proton-ionophore dinitrophenol (DNP). The data demonstrate that intracellular energy is stored via a sodium gradient during autofermentative metabolism and that, when this gradient is blocked, the blockage is compensated by increased energy conversion via carbohydrate catabolism.
Microcolony Formation by Single-Cell Synechococcus Strains as a Fast Response to UV Radiation
Authors: Callieri Cristiana , Lami Andrea , Bertoni Roberto
Published: September 2011

UV radiation (UVR) has different effects on prokaryotic cells, such as, for instance, filamentation and aggregation in bacteria. Here we studied the effect of UVR on microcolony formation in two freshwater
Synechococcus
strains of different ribotypes (group B and group I) and phycobiliprotein compositions (phycoerythrin [PE] and phycocyanin [PC]). Each strain was photoacclimated at two light intensities, low light (LL) (10 μmol m
−2
s
−1
) and moderate light (ML) (100 μmol m
−2
s
−1
). The cultures were exposed for 6 days to treatments with UVR or without UVR. PE-rich
Synechococcus
acclimated to LL had a low carotenoid/chlorophyll
a
(car/chl) ratio but responded faster to UVR treatment, producing the highest percentages of microcolonies and of cells in microcolonies. Conversely, the same strain acclimated to ML, with a higher car/chl ratio, did not aggregate significantly. These results suggest that microcolony formation by PE-rich
Synechococcus
is induced by UVR if carotenoid levels are low. PC-rich
Synechococcus
formed a very low percentage of microcolonies in both acclimations even with low car/chl ratio. The different responses of the two
Synechococcus
strains to UVR depend on their pigment compositions. On the other hand, this study does not exclude that UVR-induced microcolony formation could also be related to specific ribotypes.
Identification and Characterization of Sclerotinia sclerotiorum NADPH Oxidases
Authors: Kim Hyo-jin , Chen Changbin , Kabbage Mehdi , Dickman Martin B.
Published: September 2011

Numerous studies have shown both the detrimental and beneficial effects of reactive oxygen species (ROS) in animals, plants, and fungi. These organisms utilize controlled generation of ROS for signaling, pathogenicity, and development. Here, we show that ROS are essential for the pathogenic development of
Sclerotinia sclerotiorum
, an economically important fungal pathogen with a broad host range. Based on the organism's completed genome sequence, we identified two
S. sclerotiorum
NADPH oxidases (SsNox1 and SsNox2), which presumably are involved in ROS generation. RNA interference (RNAi) was used to examine the function of SsNox1 and SsNox2. Silencing of SsNox1 expression indicated a central role for this enzyme in both virulence and pathogenic (sclerotial) development, while inactivation of the SsNox2 gene resulted in limited sclerotial development, but the organism remained fully pathogenic. Δ
Ssnox1
strains had reduced ROS levels, were unable to develop sclerotia, and unexpectedly correlated with significantly reduced oxalate production. These results are in accordance with previous observations indicating that fungal NADPH oxidases are required for pathogenic development and are consistent with the importance of ROS regulation in the successful pathogenesis of
S. sclerotiorum
.
Phage Specificity of the Freshwater Fish Pathogen Flavobacterium columnare
Authors: Laanto Elina , Sundberg Lotta-Riina , Bamford Jaana K. H.
Published: September 2011

Flavobacteria and their phages were isolated from Finnish freshwaters and fish farms. Emphasis was placed on finding phages infecting the fish pathogen
Flavobacterium columnare
for use as phage therapy agents. The host ranges of the flavobacterial phages varied, phages infecting
F. columnare
being more host specific than the other phages.