bluuebunny/crossref_metadata_2025 huggingface dataset:
Fig. S6 from Targeting STAT5 Signaling Overcomes Resistance to IDH Inhibitors in Acute Myeloid Leukemia through Suppression of Stemness
Authors: Liu Alex C.H. , Cathelin Severine , Yang Yitong , Dai David L. , Ayyathan Dhanoop Manikoth , Hosseini Mohsen , Minden Mark D. , Tierens Anne , Chan Steven M.
Published: April 2023

Supplementary Figure 6 and legend
Fig. S4 from Targeting STAT5 Signaling Overcomes Resistance to IDH Inhibitors in Acute Myeloid Leukemia through Suppression of Stemness
Authors: Liu Alex C.H. , Cathelin Severine , Yang Yitong , Dai David L. , Ayyathan Dhanoop Manikoth , Hosseini Mohsen , Minden Mark D. , Tierens Anne , Chan Steven M.
Published: April 2023

Supplementary Figure 4 and legend
Fig. S2 from Targeting STAT5 Signaling Overcomes Resistance to IDH Inhibitors in Acute Myeloid Leukemia through Suppression of Stemness
Authors: Liu Alex C.H. , Cathelin Severine , Yang Yitong , Dai David L. , Ayyathan Dhanoop Manikoth , Hosseini Mohsen , Minden Mark D. , Tierens Anne , Chan Steven M.
Published: April 2023

Supplementary Figure 2 and legend
Fig. S1 from Targeting STAT5 Signaling Overcomes Resistance to IDH Inhibitors in Acute Myeloid Leukemia through Suppression of Stemness
Authors: Liu Alex C.H. , Cathelin Severine , Yang Yitong , Dai David L. , Ayyathan Dhanoop Manikoth , Hosseini Mohsen , Minden Mark D. , Tierens Anne , Chan Steven M.
Published: April 2023

Supplementary Figure 1 and legend
Data file S3 from Targeting STAT5 Signaling Overcomes Resistance to IDH Inhibitors in Acute Myeloid Leukemia through Suppression of Stemness
Authors: Liu Alex C.H. , Cathelin Severine , Yang Yitong , Dai David L. , Ayyathan Dhanoop Manikoth , Hosseini Mohsen , Minden Mark D. , Tierens Anne , Chan Steven M.
Published: April 2023

OCImIDH1N-R WES exonic nonsynonymous variants (DP>100)
Data file S2 from Targeting STAT5 Signaling Overcomes Resistance to IDH Inhibitors in Acute Myeloid Leukemia through Suppression of Stemness
Authors: Liu Alex C.H. , Cathelin Severine , Yang Yitong , Dai David L. , Ayyathan Dhanoop Manikoth , Hosseini Mohsen , Minden Mark D. , Tierens Anne , Chan Steven M.
Published: April 2023

CRISPR screen results
Supplementary Data from Aberrant L-Fucose Accumulation and Increased Core Fucosylation Are Metabolic Liabilities in Mesenchymal Glioblastoma
Authors: Pieri Valentina , Gallotti Alberto L. , Drago Denise , Cominelli Manuela , Pagano Ilaria , Conti Valentina , Valtorta Silvia , Coliva Angela , Lago Sara , Michelatti Daniela , Massimino Luca , Ungaro Federica , Perani Laura , Spinelli Antonello , Castellano Antonella , Falini Andrea , Zippo Alessio , Poliani Pietro L. , Moresco Rosa Maria , Andolfo Annapaola , Galli Rossella
Published: April 2023

Supplementary Figures and Tables
Supplementary Figures from MYC Overexpression Drives Immune Evasion in Hepatocellular Carcinoma That Is Reversible through Restoration of Proinflammatory Macrophages
Authors: Dhanasekaran Renumathy , Hansen Aida S. , Park Jangho , Lemaitre Lea , Lai Ian , Adeniji Nia , Kuruvilla Sibu , Suresh Akanksha , Zhang Josephine , Swamy Varsha , Felsher Dean W.
Published: April 2023

Supp Figures 1-14
Supplementary Figure from KDM6A Loss Recruits Tumor-Associated Neutrophils and Promotes Neutrophil Extracellular Trap Formation in Pancreatic Cancer
Authors: Yang Jing , Jin Lin , Kim Hong Sun , Tian Feng , Yi Zhujun , Bedi Karan , Ljungman Mats , Pasca di Magliano Marina , Crawford Howard , Shi Jiaqi
Published: April 2023

Supplementary Figure from KDM6A Loss Recruits Tumor-Associated Neutrophils and Promotes Neutrophil Extracellular Trap Formation in Pancreatic Cancer
Supplementary Table S1 from Racial Differences in the Association Between Preoperative Serum Cholesterol and Prostate Cancer Recurrence: Results from the SEARCH Database
Authors: Allott Emma H. , Howard Lauren E. , Aronson William J. , Terris Martha K. , Kane Christopher J. , Amling Christopher L. , Cooperberg Matthew R. , Freedland Stephen J.
Published: April 2023

Characteristics of men excluded due to preoperative statin use, versus our study population
Supplementary Table 6 from Common Breast Cancer Susceptibility Variants in LSP1 and RAD51L1 Are Associated with Mammographic Density Measures that Predict Breast Cancer Risk
Authors: Vachon Celine M. , Scott Christopher G. , Fasching Peter A. , Hall Per , Tamimi Rulla M. , Li Jingmei , Stone Jennifer , Apicella Carmel , Odefrey Fabrice , Gierach Gretchen L. , Jud Sebastian M. , Heusinger Katharina , Beckmann Matthias W. , Pollan Marina , Fernández-Navarro Pablo , Gonzalez-Neira Anna , Benitez Javier , van Gils Carla H. , Lokate Mariëtte , Onland-Moret N. Charlotte , Peeters Petra H.M. , Brown Judith , Leyland Jean , Varghese Jajini S. , Easton Douglas F. , Thompson Deborah J. , Luben Robert N. , Warren Ruth M.L. , Wareham Nicholas J. , Loos Ruth J.F. , Khaw Kay-Tee , Ursin Giske , Lee Eunjung , Gayther Simon A. , Ramus Susan J. , Eeles Rosalind A. , Leach Martin O. , Kwan-Lim Gek , Couch Fergus J. , Giles Graham G. , Baglietto Laura , Krishnan Kavitha , Southey Melissa C. , Le Marchand Loic , Kolonel Laurence N. , Woolcott Christy , Maskarinec Gertraud , Haiman Christopher A. , Walker Kate , Johnson Nichola , McCormack Valeria A. , Biong Margarethe , Alnaes Grethe I.G. , Gram Inger Torhild , Kristensen Vessela N. , Børresen-Dale Anne-Lise , Lindström Sara , Hankinson Susan E. , Hunter David J. , Andrulis Irene L. , Knight Julia A. , Boyd Norman F. , Figuero Jonine D. , Lissowska Jolanta , Wesolowska Ewa , Peplonska Beata , Bukowska Agnieszka , Reszka Edyta , Liu JianJun , Eriksson Louise , Czene Kamila , Audley Tina , Wu Anna H. , Pankratz V. Shane , Hopper John L. , dos-Santos-Silva Isabel
Published: April 2023

PDF file, 133KB, Supplemental Table 6a. Per-Allele Association (SE) of Breast Cancer Susceptibility Variants with Mammographic Percent Density Stratifying by Case Status, BMI, Menopausal Status and PMH Use. Supplemental Table 6b. Per-Allele Associations (SE) of Breast Cancer Susceptibility Variants with Adjusted Mammographic Dense Area Stratifying by Case Status, BMI Menopausal Status and PMH Use. Supplemental Table 6c. Per-Allele Associations (SE) of Breast Cancer Susceptibility Variants with Adjusted Mammographic Non Dense Area Stratifying by Case Status, BMI Menopausal Status and PMH Use.
Supplementary Table S5 from Characterizing Genetic Susceptibility to Breast Cancer in Women of African Ancestry
Authors: Feng Ye , Rhie Suhn Kyong , Huo Dezheng , Ruiz-Narvaez Edward A. , Haddad Stephen A. , Ambrosone Christine B. , John Esther M. , Bernstein Leslie , Zheng Wei , Hu Jennifer J. , Ziegler Regina G. , Nyante Sarah , Bandera Elisa V. , Ingles Sue A. , Press Michael F. , Deming Sandra L. , Rodriguez-Gil Jorge L. , Zheng Yonglan , Yao Song , Han Yoo-Jeong , Ogundiran Temidayo O. , Rebbeck Timothy R. , Adebamowo Clement , Ojengbede Oladosu , Falusi Adeyinka G. , Hennis Anselm , Nemesure Barbara , Ambs Stefan , Blot William , Cai Qiuyin , Signorello Lisa , Nathanson Katherine L. , Lunetta Kathryn L. , Sucheston-Campbell Lara E. , Bensen Jeannette T. , Chanock Stephen J. , Marchand Loic Le , Olshan Andrew F. , Kolonel Laurence N. , Conti David V. , Coetzee Gerhard A. , Stram Daniel O. , Olopade Olufunmilayo I. , Palmer Julie R. , Haiman Christopher A.
Published: April 2023

Supplementary Table S5, a. Associations with better markers in African Americans. b. Associations with Secondary Signals in African Americans.
Supplementary Table S4 from Characterizing Genetic Susceptibility to Breast Cancer in Women of African Ancestry
Authors: Feng Ye , Rhie Suhn Kyong , Huo Dezheng , Ruiz-Narvaez Edward A. , Haddad Stephen A. , Ambrosone Christine B. , John Esther M. , Bernstein Leslie , Zheng Wei , Hu Jennifer J. , Ziegler Regina G. , Nyante Sarah , Bandera Elisa V. , Ingles Sue A. , Press Michael F. , Deming Sandra L. , Rodriguez-Gil Jorge L. , Zheng Yonglan , Yao Song , Han Yoo-Jeong , Ogundiran Temidayo O. , Rebbeck Timothy R. , Adebamowo Clement , Ojengbede Oladosu , Falusi Adeyinka G. , Hennis Anselm , Nemesure Barbara , Ambs Stefan , Blot William , Cai Qiuyin , Signorello Lisa , Nathanson Katherine L. , Lunetta Kathryn L. , Sucheston-Campbell Lara E. , Bensen Jeannette T. , Chanock Stephen J. , Marchand Loic Le , Olshan Andrew F. , Kolonel Laurence N. , Conti David V. , Coetzee Gerhard A. , Stram Daniel O. , Olopade Olufunmilayo I. , Palmer Julie R. , Haiman Christopher A.
Published: April 2023

Supplementary Table S4. Associations with 74 Breast Cancer Risk Variants in African Americans by Estrogen Receptor (ER) Status.
Supplementary Tables from Potential Susceptibility Loci Identified for Renal Cell Carcinoma by Targeting Obesity-Related Genes
Authors: Shu Xiang , Purdue Mark P. , Ye Yuanqing , Tu Huakang , Wood Christopher G. , Tannir Nizar M. , Wang Zhaoming , Albanes Demetrius , Gapstur Susan M. , Stevens Victoria L. , Rothman Nathaniel , Chanock Stephen J. , Wu Xifeng
Published: April 2023

Table S1. Obesity relevant pathways selected from Biocarta, KEGG and Reactome pathway databases Table S2. Meta-analysis of 21 SNPs in phase I MDA-GWAS and phase II NCI-GWAS Table S3. Validation of 19 SNPs in phase III MDA-Oncoarray Table S4. Enhancer and Dnase enrichment analysis for rs4601989 Table S5. Association of previous GWAS identified susceptibility loci in the current study
Supplementary Figure 1 from Potential Susceptibility Loci Identified for Renal Cell Carcinoma by Targeting Obesity-Related Genes
Authors: Shu Xiang , Purdue Mark P. , Ye Yuanqing , Tu Huakang , Wood Christopher G. , Tannir Nizar M. , Wang Zhaoming , Albanes Demetrius , Gapstur Susan M. , Stevens Victoria L. , Rothman Nathaniel , Chanock Stephen J. , Wu Xifeng
Published: April 2023

Meta-analysis of 3 SNPs
Supplementary Table S1 from Characterizing Genetic Susceptibility to Breast Cancer in Women of African Ancestry
Authors: Feng Ye , Rhie Suhn Kyong , Huo Dezheng , Ruiz-Narvaez Edward A. , Haddad Stephen A. , Ambrosone Christine B. , John Esther M. , Bernstein Leslie , Zheng Wei , Hu Jennifer J. , Ziegler Regina G. , Nyante Sarah , Bandera Elisa V. , Ingles Sue A. , Press Michael F. , Deming Sandra L. , Rodriguez-Gil Jorge L. , Zheng Yonglan , Yao Song , Han Yoo-Jeong , Ogundiran Temidayo O. , Rebbeck Timothy R. , Adebamowo Clement , Ojengbede Oladosu , Falusi Adeyinka G. , Hennis Anselm , Nemesure Barbara , Ambs Stefan , Blot William , Cai Qiuyin , Signorello Lisa , Nathanson Katherine L. , Lunetta Kathryn L. , Sucheston-Campbell Lara E. , Bensen Jeannette T. , Chanock Stephen J. , Marchand Loic Le , Olshan Andrew F. , Kolonel Laurence N. , Conti David V. , Coetzee Gerhard A. , Stram Daniel O. , Olopade Olufunmilayo I. , Palmer Julie R. , Haiman Christopher A.
Published: April 2023

Supplementary Table S1. Associations of Overall Breast Cancer Risk with 74 Breast Cancer Risk Variants in African Americans with Study-specific Results.
Supplementary Figure S2 from Characterizing Genetic Susceptibility to Breast Cancer in Women of African Ancestry
Authors: Feng Ye , Rhie Suhn Kyong , Huo Dezheng , Ruiz-Narvaez Edward A. , Haddad Stephen A. , Ambrosone Christine B. , John Esther M. , Bernstein Leslie , Zheng Wei , Hu Jennifer J. , Ziegler Regina G. , Nyante Sarah , Bandera Elisa V. , Ingles Sue A. , Press Michael F. , Deming Sandra L. , Rodriguez-Gil Jorge L. , Zheng Yonglan , Yao Song , Han Yoo-Jeong , Ogundiran Temidayo O. , Rebbeck Timothy R. , Adebamowo Clement , Ojengbede Oladosu , Falusi Adeyinka G. , Hennis Anselm , Nemesure Barbara , Ambs Stefan , Blot William , Cai Qiuyin , Signorello Lisa , Nathanson Katherine L. , Lunetta Kathryn L. , Sucheston-Campbell Lara E. , Bensen Jeannette T. , Chanock Stephen J. , Marchand Loic Le , Olshan Andrew F. , Kolonel Laurence N. , Conti David V. , Coetzee Gerhard A. , Stram Daniel O. , Olopade Olufunmilayo I. , Palmer Julie R. , Haiman Christopher A.
Published: April 2023

Supplementary Figure S2. Supplementary Figure S2. Genome browser views of 3p24, 11q13, 12p11, 14q13, 16q12/TOX3, 16q12/FTO,16q23, and 19p13.
Supplementary Figure S1 from Characterizing Genetic Susceptibility to Breast Cancer in Women of African Ancestry
Authors: Feng Ye , Rhie Suhn Kyong , Huo Dezheng , Ruiz-Narvaez Edward A. , Haddad Stephen A. , Ambrosone Christine B. , John Esther M. , Bernstein Leslie , Zheng Wei , Hu Jennifer J. , Ziegler Regina G. , Nyante Sarah , Bandera Elisa V. , Ingles Sue A. , Press Michael F. , Deming Sandra L. , Rodriguez-Gil Jorge L. , Zheng Yonglan , Yao Song , Han Yoo-Jeong , Ogundiran Temidayo O. , Rebbeck Timothy R. , Adebamowo Clement , Ojengbede Oladosu , Falusi Adeyinka G. , Hennis Anselm , Nemesure Barbara , Ambs Stefan , Blot William , Cai Qiuyin , Signorello Lisa , Nathanson Katherine L. , Lunetta Kathryn L. , Sucheston-Campbell Lara E. , Bensen Jeannette T. , Chanock Stephen J. , Marchand Loic Le , Olshan Andrew F. , Kolonel Laurence N. , Conti David V. , Coetzee Gerhard A. , Stram Daniel O. , Olopade Olufunmilayo I. , Palmer Julie R. , Haiman Christopher A.
Published: April 2023

Supplementary Figure S1, Supplementary Figure S1. Regional plots of 3p24, 11q13, 12p11, 14q13, 16q12/TOX3, 16q12/FTO, 16q23, and 19p13.
Supplementary Fig Leg from Characterizing Genetic Susceptibility to Breast Cancer in Women of African Ancestry
Authors: Feng Ye , Rhie Suhn Kyong , Huo Dezheng , Ruiz-Narvaez Edward A. , Haddad Stephen A. , Ambrosone Christine B. , John Esther M. , Bernstein Leslie , Zheng Wei , Hu Jennifer J. , Ziegler Regina G. , Nyante Sarah , Bandera Elisa V. , Ingles Sue A. , Press Michael F. , Deming Sandra L. , Rodriguez-Gil Jorge L. , Zheng Yonglan , Yao Song , Han Yoo-Jeong , Ogundiran Temidayo O. , Rebbeck Timothy R. , Adebamowo Clement , Ojengbede Oladosu , Falusi Adeyinka G. , Hennis Anselm , Nemesure Barbara , Ambs Stefan , Blot William , Cai Qiuyin , Signorello Lisa , Nathanson Katherine L. , Lunetta Kathryn L. , Sucheston-Campbell Lara E. , Bensen Jeannette T. , Chanock Stephen J. , Marchand Loic Le , Olshan Andrew F. , Kolonel Laurence N. , Conti David V. , Coetzee Gerhard A. , Stram Daniel O. , Olopade Olufunmilayo I. , Palmer Julie R. , Haiman Christopher A.
Published: April 2023

Supplementary Fig Leg
Supplementary Table 2 from Reallocating Time to Sleep, Sedentary Time, or Physical Activity: Associations with Waist Circumference and Body Mass Index in Breast Cancer Survivors
Authors: Boyle Terry , Vallance Jeff K. , Buman Matthew P. , Lynch Brigid M.
Published: April 2023

Supplementary Table 2. Associations between prolonged sedentary bouts, non-prolonged sedentary bouts, light-intensity physical activity (LPA) and moderate-to-vigorous physical activity (MVPA) with waist circumference and body mass index when reallocating 30 minutes of one activity to 30 minutes of another activity in a sample of breast cancer survivors.
Supplemental Table 2. Average BMIs in the ANECS, SEARCH and iCOGS endometrial cancer datasets. from Genetic Risk Score Mendelian Randomization Shows that Obesity Measured as Body Mass Index, but not Waist:Hip Ratio, Is Causal for Endometrial Cancer
Authors: Painter Jodie N. , O'Mara Tracy A. , Marquart Louise , Webb Penelope M. , Attia John , Medland Sarah E. , Cheng Timothy , Dennis Joe , Holliday Elizabeth G. , McEvoy Mark , Scott Rodney J. , Ahmed Shahana , Healey Catherine S. , Shah Mitul , Gorman Maggie , Martin Lynn , Hodgson Shirley V. , Beckmann Matthias W. , Ekici Arif B. , Fasching Peter A. , Hein Alexander , Rübner Matthias , Czene Kamila , Darabi Hatef , Hall Per , Li Jingmei , Dörk Thilo , Dürst Matthias , Hillemanns Peter , Runnebaum Ingo B. , Amant Frederic , Annibali Daniela , Depreeuw Jeroen , Lambrechts Diether , Neven Patrick , Cunningham Julie M. , Dowdy Sean C. , Goode Ellen L. , Fridley Brooke L. , Winham Stacey J. , Njølstad Tormund S. , Salvesen Helga B. , Trovik Jone , Werner Henrica M.J. , Ashton Katie A. , Otton Geoffrey , Proietto Anthony , Mints Miriam , Tham Emma , Bolla Manjeet K. , Michailidou Kyriaki , Wang Qin , Tyrer Jonathan P. , Hopper John L. , Peto Julian , Swerdlow Anthony J. , Burwinkel Barbara , Brenner Hermann , Meindl Alfons , Brauch Hiltrud , Lindblom Annika , Chang-Claude Jenny , Couch Fergus J. , Giles Graham G. , Kristensen Vessela N. , Cox Angela , Pharoah Paul D.P. , Tomlinson Ian , Dunning Alison M. , Easton Douglas F. , Thompson Deborah J. , Spurdle Amanda B.
Published: April 2023

Excel file detailing average BMI per study population
Supplemental Table from A Comparison of Human Papillomavirus Genotype-Specific DNA and E6/E7 mRNA Detection to Identify Anal Precancer among HIV-Infected Men Who Have Sex with Men
Authors: Castle Philip E. , Follansbee Stephen , Borgonovo Sylvia , Tokugawa Diane , Schwartz Lauren M. , Lorey Thomas S. , LaMere Brandon , Gage Julia C. , Fetterman Barbara , Darragh Teresa M. , Rodriguez Ana Cecilia , Wentzensen Nicolas
Published: April 2023

Study population
Supplemental Table 2 from Depressive Symptoms and Short Telomere Length Are Associated with Increased Mortality in Bladder Cancer Patients
Authors: Lin Jie , Blalock Janice A. , Chen Meng , Ye Yuanqing , Gu Jian , Cohen Lorenzo , Cinciripini Paul M. , Wu Xifeng
Published: April 2023

Supplemental Table 2. Univariate and adjusted associations between demographic, clinical variables, depression, and recurrence/progression in patients with superficial bladder cancer
Supplemental Table 1 from Depressive Symptoms and Short Telomere Length Are Associated with Increased Mortality in Bladder Cancer Patients
Authors: Lin Jie , Blalock Janice A. , Chen Meng , Ye Yuanqing , Gu Jian , Cohen Lorenzo , Cinciripini Paul M. , Wu Xifeng
Published: April 2023

Supplemental Table 1. Association between telomere length and mortality in bladder cancer patients in univariate and multivariate Cox regression analyses
Supplementary Data from Composite Three-Marker Assay for Early Detection of Kidney Cancer
Authors: Su Kim Dong , Choi Young Deuk , Moon Mihyang , Kang Suki , Lim Jong-Baeck , Kim Kyung Min , Park Kyung Mok , Cho Nam Hoon
Published: April 2023

PDF - 547KB, Supplementary Data
Supplementary Table 1 from Seroprevalence of Human Papillomavirus (HPV) Type 6 and 16 Vary by Anatomic Site of HPV Infection in Men
Authors: Lu Beibei , Viscidi Raphael P. , Wu Yougui , Nyitray Alan G. , Villa Luisa L. , Lazcano-Ponce Eduardo , Carvalho da Silva Roberto J. , Baggio Maria Luiza , Quiterio Manuel , Salmerón Jorge , Smith Danelle C. , Abrahamsen Martha , Papenfuss Mary , Giuliano Anna R.
Published: April 2023

PDF file, 85K, Participant characteristics in the current analysis versus the full HIM study cohort.
Supplementary Data from Composite Three-Marker Assay for Early Detection of Kidney Cancer
Authors: Su Kim Dong , Choi Young Deuk , Moon Mihyang , Kang Suki , Lim Jong-Baeck , Kim Kyung Min , Park Kyung Mok , Cho Nam Hoon
Published: April 2023

PDF - 547KB, Supplementary Data.
Supplementary Table S1. City A survey respondents' awareness of health disparities and ratings of whether factors have a strong effect on health, by local newspaper readershipa from Prevalence and Framing of Health Disparities in Local Print News: Implications for Multilevel Interventions to Address Cancer Inequalities
Authors: Nagler Rebekah H. , Bigman Cabral A. , Ramanadhan Shoba , Ramamurthi Divya , Viswanath K.
Published: April 2023

Supplementary Table S1. City A survey respondents' awareness of health disparities and ratings of whether factors have a strong effect on health, by local newspaper readership.
Supplementary Table 1 from Evaluation of Glycomic Profiling as a Diagnostic Biomarker for Epithelial Ovarian Cancer
Authors: Kim Kyoungmi , Ruhaak L. Renee , Nguyen Uyen Thao , Taylor Sandra L. , Dimapasoc Lauren , Williams Cynthia , Stroble Carol , Ozcan Sureyya , Miyamoto Suzanne , Lebrilla Carlito B. , Leiserowitz Gary S.
Published: April 2023

XLSX file - 15KB, This is the source file of Suppl. Table 1. Description of Table content: Confirmation of candidate individual glycans using (a) a subset of the OC1 training set not used during training through leave-one-out cross validation and (b) an independent OC2 test set. Classification performance was measured in terms of overall accuracy, sensitivity, specificity, and area under the curve (AUC) of each of the individual top 20 most significant glycans for comparing healthy controls to the various tumor groups. Order Enter gives the order in which each glycan entered the multiple marker classifier and Cut-off Threshold gives the threshold value used to classify samples in testing for each glycan.
Supplementary Methods, Figures 1 - 5, Tables 1 - 4 from Peripheral Blood Immune Cell Methylation Profiles Are Associated with Nonhematopoietic Cancers
Authors: Koestler Devin C. , Marsit Carmen J. , Christensen Brock C. , Accomando William , Langevin Scott M. , Houseman E. Andres , Nelson Heather H. , Karagas Margaret R. , Wiencke John K. , Kelsey Karl T.
Published: April 2023

PDF file, 437KB, Supplementary Table 1: Characteristics of the leukocyte subtype study population.Supplementary Table 2: Characteristics of the study population in the HNSCC data set. Supplementary Table 3: Characteristics of the study population in the Bladder cancer data set. Supplementary Table 4: The top 50 differentially methylated regions (DMRs) among the leukocyte subtypes (false discovery rate q-values < 0.001 for all). Supplementary Figure 1: Diagram illustrating Semi-Supervised Recursively Partitioned Mixture Models (SS-RPMM). Supplementary Figure 2: Diagram representing the analytic workflow the HNSCC data set. Supplementary Figure 3: Diagrams representing the analytic workflow the ovarian cancer data set. Supplementary Figure 4: Diagrams representing the analytic workflow the bladder cancer data set. Supplementary Figure 5: Results from the SS-RPMM analysis of the Ovarian cancer data set.
Supplementary Tables S1-S4 from Postmenopausal Hormone Therapy and Breast Cancer Prognostic Characteristics: A Linkage between Nationwide Registries
Authors: Román Marta , Graff-Iversen Sidsel , Weiderpass Elisabete , Vangen Siri , Sakshaug Solveig , Hofvind Solveig , Ursin Giske
Published: April 2023

Supplementary Table 1. Risk of invasive breast cancer by current use of different types of oral hormone therapy for all breast cancer cases, screen detected cases and non-screen detected cases. Supplementary Table 2. Risk of invasive breast cancer by current use of different types of oral hormone therapy and histological grade for all breast cancer cases, screen detected cases and nonscreen detected cases. Supplementary Table 3. Risk of invasive breast cancer by current use of different types of oral hormone therapy and lymph node involvement for all breast cancer cases, screen detected cases and non-screen detected cases. Supplementary Table 4. Risk of invasive breast cancer by current use of different types of oral hormone therapy and tumor size for all breast cancer cases, screen detected cases and non-screen detected cases
Supplementary Figure 1, Tables 1 - 2 from Circadian Variation of Melatonin, Light Exposure, and Diurnal Preference in Day and Night Shift Workers of Both Sexes
Authors: Papantoniou Kyriaki , Pozo Oscar J. , Espinosa Ana , Marcos Josep , Castaño-Vinyals Gemma , Basagaña Xavier , Ribas Ferran Calduch , Mirabent Joan , Martín Jordi , Carenys Gemma , Martín Celia Reyes , Middleton Benita , Skene Debra J. , Kogevinas Manolis
Published: April 2023

PDF file - 196KB, Table 1. Estimated aMT6s mesor (circadian mean) and acrophase (peak time) by night shift work (shift status, night shift workers' diurnal preference, nights worked over the past 2 weeks and total years worked in night shift). Table 2. Estimated aMT6s mesor (circadian mean) and acrophase (peak time) by light exposure among night shift workers (tertiles of mean light exposure from 24:00 to 05:00 h and over the night shift). Figure 1. Directed Acyclic Graph (DAG) for the selection of confounders (ancestor of exposure and outcome) using DAGitty (http://www.dagitty.net) for the association between night shift work and aMT6s (levels and time of peak).
Supplemental tables 1 and 2 from Inflammatory Markers and Risk of Epithelial Ovarian Cancer by Tumor Subtypes: The EPIC Cohort
Authors: Ose Jennifer , Schock Helena , Tjønneland Anne , Hansen Louise , Overvad Kim , Dossus Laure , Clavel-Chapelon Françoise , Baglietto Laura , Boeing Heiner , Trichopolou Antonia , Benetou Vassiliki , Lagiou Pagona , Masala Giovanna , Tagliabue Giovanna , Tumino Rosario , Sacerdote Carlotta , Mattiello Amalia , Bueno-de-Mesquita H. B(as). , Peeters Petra H. M. , Onland-Moret N. Charlotte , Weiderpass Elisabete , Gram Inger T. , Sánchez Soledad , Obon-Santacana Mireia , Sànchez-Pérez Maria-José , Larrañaga Nerea , Castaño José María Huerta , Ardanaz Eva , Brändstedt Jenny , Lundin Eva , Idahl Annika , Travis Ruth C. , Khaw Kay-Tee , Rinaldi Sabina , Romieu Isabelle , Merritt Melissa A. , Gunter Marc J. , Riboli Elio , Kaaks Rudolf , Fortner Renée T.
Published: April 2023

Supplemental tables 1 and 2. Supplementary Table 1. Odds ratios (95% CI) for ovarian cancer by tertile concentrations and for doubling in CRP and IL-6 by menopausal status, age at diagnosis and HRT use at blood donation. Supplementary Table 2. Odds ratios (95% CI) for ovarian cancer for doubling in CRP and IL-6 by BMI categories and waist circumference, mutual adjusted for IL-6 and CRP.
Supplementary Table 1 from Indoor Tanning Dependence in Young Adult Women
Authors: Mays Darren , Atkins Michael B. , Ahn Jaeil , Tercyak Kenneth P.
Published: April 2023

Adjusted logistic regression model of correlates of indoor tanning (IT) dependence including all variables
Supplemental Tables 1-3 from Cancer Risk and Subsequent Survival after Hospitalization for Intermittent Claudication
Authors: Onega Tracy , Baron John A. , Johnsen Søren P. , Pedersen Lars , Farkas Dóra K. , Sørensen Henrik T.
Published: April 2023

Supplemental Tables 1-3. Supplementary Table 1. Codes used to identify conditions of interest in the Danish study population. Supplementary Table 2. Tobacco-related cancers according to the International Agency for Research on Cancer (IARC).24 Supplementary Table 3. Standardized incidence ratios (SIRs) for selected cancers among patients (n=53,762) with intermittent claudication in Denmark from 1980-2011.
Supplementary Table S2. Agreement between IHC-based and intrinsic subtype, using dichotomous biomarker IHC status from Performance of Three-Biomarker Immunohistochemistry for Intrinsic Breast Cancer Subtyping in the AMBER Consortium
Authors: Allott Emma H. , Cohen Stephanie M. , Geradts Joseph , Sun Xuezheng , Khoury Thaer , Bshara Wiam , Zirpoli Gary R. , Miller C. Ryan , Hwang Helena , Thorne Leigh B. , O'Connor Siobhan , Tse Chiu-Kit , Bell Mary B. , Hu Zhiyuan , Li Yan , Kirk Erin L. , Bethea Traci N. , Perou Charles M. , Palmer Julie R. , Ambrosone Christine B. , Olshan Andrew F. , Troester Melissa A.
Published: April 2023

Agreement between IHC-based and RNA-based intrinsic subtyping
Supplementary Tables 1 - 2 from Predictors of the Occurrence of Smoking Discontinuation in Novice Adolescent Smokers
Authors: O'Loughlin Jennifer L. , Sylvestre Marie-Pierre , Dugas Erika N. , Karp Igor
Published: April 2023

PDF file - 118K, Supplementary Table I. Description of potential predictors. Supplementary Table II: Number of missing values for each of the variables by survey.
Supplementary Table S1. Core level agreement between automated and manual scoring of central tissue microarrays from Performance of Three-Biomarker Immunohistochemistry for Intrinsic Breast Cancer Subtyping in the AMBER Consortium
Authors: Allott Emma H. , Cohen Stephanie M. , Geradts Joseph , Sun Xuezheng , Khoury Thaer , Bshara Wiam , Zirpoli Gary R. , Miller C. Ryan , Hwang Helena , Thorne Leigh B. , O'Connor Siobhan , Tse Chiu-Kit , Bell Mary B. , Hu Zhiyuan , Li Yan , Kirk Erin L. , Bethea Traci N. , Perou Charles M. , Palmer Julie R. , Ambrosone Christine B. , Olshan Andrew F. , Troester Melissa A.
Published: April 2023

Agreement between manual and automated methods for quantification of biomarker expression data in tissue microarrays.
Supplementary Materials and Methods. Immunohistochemical staining and automated analysis methods from Performance of Three-Biomarker Immunohistochemistry for Intrinsic Breast Cancer Subtyping in the AMBER Consortium
Authors: Allott Emma H. , Cohen Stephanie M. , Geradts Joseph , Sun Xuezheng , Khoury Thaer , Bshara Wiam , Zirpoli Gary R. , Miller C. Ryan , Hwang Helena , Thorne Leigh B. , O'Connor Siobhan , Tse Chiu-Kit , Bell Mary B. , Hu Zhiyuan , Li Yan , Kirk Erin L. , Bethea Traci N. , Perou Charles M. , Palmer Julie R. , Ambrosone Christine B. , Olshan Andrew F. , Troester Melissa A.
Published: April 2023

This file describes immunohistochemistry staining for ER, PR and HERs in tissue microarrays, in addition to automated quantification of staining.
Supplementary Table 1 from The Association of High-Density Lipoprotein Cholesterol with Cancer Incidence in Type II Diabetes: A Case of Reverse Causality?
Authors: Morton Jamie , Ng Martin K.C. , Chalmers John , Woodward Mark , Mancia Giuseppe , Poulter Neil R. , Marre Michel , Cooper Mark E. , Zoungas Sophia
Published: April 2023

PDF file - 85K, Baseline characteristics stratified by subsequent cancer cases versus non-cases.
Supplementary Table 2 from Diagnostic Delay and Sociodemographic Predictors of Stage at Diagnosis and Mortality in Unilateral and Bilateral Retinoblastoma
Authors: Ramírez-Ortiz Marco A. , Ponce-Castañeda M. Veronica , Cabrera-Muñoz M. Lourdes , Medina-Sansón Aurora , Liu Xinhua , Orjuela Manuela A.
Published: April 2023

PDF file - 43K, Supplementary Table 2: Mean scores for Clinical Staging shown by prenatal living conditions.
Supplementary Table 1 from Diagnostic Delay and Sociodemographic Predictors of Stage at Diagnosis and Mortality in Unilateral and Bilateral Retinoblastoma
Authors: Ramírez-Ortiz Marco A. , Ponce-Castañeda M. Veronica , Cabrera-Muñoz M. Lourdes , Medina-Sansón Aurora , Liu Xinhua , Orjuela Manuela A.
Published: April 2023

PDF file - 44K, Supplementary Table 1: Spearman correlation coefficient for bivariate associations of predictors.
Table S1 from Use of Antihypertensive Medications and Risk of Adverse Breast Cancer Outcomes in a SEER–Medicare Population
Authors: Chen Lu , Chubak Jessica , Boudreau Denise M. , Barlow William E. , Weiss Noel S. , Li Christopher I.
Published: April 2023

Select characteristics of women included and excluded from the study
Figure S1 from Use of Antihypertensive Medications and Risk of Adverse Breast Cancer Outcomes in a SEER–Medicare Population
Authors: Chen Lu , Chubak Jessica , Boudreau Denise M. , Barlow William E. , Weiss Noel S. , Li Christopher I.
Published: April 2023

Study population inclusion/exclusion flow chart
Supplementary Figure 5 from Glomerular Function Time Trends in Long-Term Survivors of Childhood Cancer: A Longitudinal Study
Authors: Mulder Renée L. , Knijnenburg Sebastiaan L. , Geskus Ronald B. , van Dalen Elvira C. , van der Pal Helena J.H. , Koning Caro C.E. , Bouts Antonia H. , Caron Huib N. , Kremer Leontien C.M.
Published: April 2023

PDF - 189KB, Glomerular filtration rate of 1403 individual childhood cancer survivors.
Supplementary Tables 1 and 2 from Non-Hodgkin Lymphoma, Body Mass Index, and Cytokine Polymorphisms: A Pooled Analysis from the InterLymph Consortium
Authors: Kane Eleanor , Skibola Christine F. , Bracci Paige M. , Cerhan James R. , Costas Laura , Smedby Karin Ekström , Holly Elizabeth A. , Maynadié Marc , Novak Anne J. , Lightfoot Tracy J. , Ansell Stephen M. , Smith Alex G. , Liebow Mark , Melbye Mads , Morton Lindsay , de Sanjosé Silvia , Slager Susan L. , Wang Sophia S. , Zhang Yawei , Zheng Tongzhang , Roman Eve
Published: April 2023

Supplementary Tables 1 and 2. Joint associations and relative excess risks due to interaction between BMI and cytokine polymorphisms for lymphoid neoplasms
Supplementary Figure 4 from Glomerular Function Time Trends in Long-Term Survivors of Childhood Cancer: A Longitudinal Study
Authors: Mulder Renée L. , Knijnenburg Sebastiaan L. , Geskus Ronald B. , van Dalen Elvira C. , van der Pal Helena J.H. , Koning Caro C.E. , Bouts Antonia H. , Caron Huib N. , Kremer Leontien C.M.
Published: April 2023

PDF - 209KB, Predicted time trends in glomerular dysfunction probability among 1122 adult survivors of childhood cancer by cumulative ifosfamide and cisplatin dose measured by the multivariable logistic regression model.
Supplementary Figure 1 from TLE3 Expression Is Associated with Sensitivity to Taxane Treatment in Ovarian Carcinoma
Authors: Samimi Goli , Ring Brian Z. , Ross Doug T. , Seitz Robert S. , Sutherland Robert L. , O'Brien Philippa M. , Hacker Neville F. , Huh Warner K.
Published: April 2023

PDF file - 18K
Supplementary Figure 3 from Glomerular Function Time Trends in Long-Term Survivors of Childhood Cancer: A Longitudinal Study
Authors: Mulder Renée L. , Knijnenburg Sebastiaan L. , Geskus Ronald B. , van Dalen Elvira C. , van der Pal Helena J.H. , Koning Caro C.E. , Bouts Antonia H. , Caron Huib N. , Kremer Leontien C.M.
Published: April 2023

PDF - 159KB, Predicted time trends in glomerular filtration rate among 1122 adult survivors of childhood cancer by nephrectomy and age at diagnosis measured by the multivariable linear random effects model.
Supplemental Tables from Prediagnostic Smoking Is Associated with Binary and Quantitative Measures of ER Protein and ESR1 mRNA Expression in Breast Tumors
Authors: Butler Eboneé N. , Bensen Jeannette T. , Chen Mengjie , Conway Kathleen , Richardson David B. , Sun Xuezheng , Geradts Joseph , Olshan Andrew F. , Troester Melissa A.
Published: April 2023

Supplemental Table 1. Estimated biomarker expression values for the effect of categorical smoking measures among all cases; Supplemental Table 2. Estimated biomarker expression values for the effect of categorical smoking measures among ER+ cases.
Supplemental Figures from Prediagnostic Smoking Is Associated with Binary and Quantitative Measures of ER Protein and ESR1 mRNA Expression in Breast Tumors
Authors: Butler Eboneé N. , Bensen Jeannette T. , Chen Mengjie , Conway Kathleen , Richardson David B. , Sun Xuezheng , Geradts Joseph , Olshan Andrew F. , Troester Melissa A.
Published: April 2023

Supplemental Figure Legends
Supplementary Table S1 from Dense and Nondense Mammographic Area and Risk of Breast Cancer by Age and Tumor Characteristics
Authors: Bertrand Kimberly A. , Scott Christopher G. , Tamimi Rulla M. , Jensen Matthew R. , Pankratz V. Shane , Norman Aaron D. , Visscher Daniel W. , Couch Fergus J. , Shepherd John , Chen Yunn-Yi , Fan Bo , Wu Fang-Fang , Ma Lin , Beck Andrew H. , Cummings Steven R. , Kerlikowske Karla , Vachon Celine M.
Published: April 2023

Characteristics of the study populations.
Supplemental Figure 1 from Prediagnostic Smoking Is Associated with Binary and Quantitative Measures of ER Protein and ESR1 mRNA Expression in Breast Tumors
Authors: Butler Eboneé N. , Bensen Jeannette T. , Chen Mengjie , Conway Kathleen , Richardson David B. , Sun Xuezheng , Geradts Joseph , Olshan Andrew F. , Troester Melissa A.
Published: April 2023

Supplemental Figure 1. The association between smoking and ER-defined breast cancer subtypes.
Supplementary Table and Figures from Changes in the Glycosylation of Kininogen and the Development of a Kininogen-Based Algorithm for the Early Detection of HCC
Authors: Wang Mengjun , Sanda Miloslav , Comunale Mary Ann , Herrera Harmin , Swindell Charles , Kono Yuko , Singal Amit G. , Marrero Jorge , Block Timothy , Goldman Radoslav , Mehta Anand
Published: April 2023

Supplementary Table S1. Patient Characteristics for patients from the University of California at San Diego; Supplementary Table S2. Fitness of algorithms; Supplementary Table S3. Cross validations of potential models; Supplementary Table S4. Statistical inference of comparing models; Supplementary Figure S1. Scheme of study design;Supplementary Figure S2. Scatter plot; Supplementary Figure S3. AUROC for the individual components analyzed; Supplementary Figure S4. MALDI-TOF analysis of low molecular weight kininogen; Supplementary Figure S5. Glycopeptide analysis of tryptic glycopeptide 44-58; Supplementary Figure S6. Glycopeptide analysis of tryptic glycopeptide 197-208 showing identification of fucosylated glycopeptides; Supplementary Figure S7. Glycopeptide analysis of tryptic glycopeptide 289-300;
Supplementary Table 1 from Age-Associated Gene Expression in Normal Breast Tissue Mirrors Qualitative Age-at-Incidence Patterns for Breast Cancer
Authors: Pirone Jason R. , D'Arcy Monica , Stewart Delisha A. , Hines William C. , Johnson Melissa , Gould Michael N. , Yaswen Paul , Jerry D. Joseph , Schneider Sallie Smith , Troester Melissa A.
Published: April 2023

PDF file, 59K, The complete list of genes significantly associated with age are given along with the average fold change comparing the median centered data for the youngest patients (<30, n=20) to that of the oldest patients (>49, n=6).
Supplementary Table 1 from No Association between Ovarian Cancer Susceptibility Variants and Breast Cancer Risk among Chinese Women
Authors: Ma Xiangyu , Cai Qiuyin , Delahanty Ryan J. , Shu Xiao-Ou , Zhang Ben , Lu Wei , Gao Yu-Tang , Zheng Wei , Long Jirong , Beeghly-Fadiel Alicia
Published: April 2023

PDF file - 79K, Supplemental Table 1. Ovarian Cancer Susceptibility Variants and Breast Cancer Risk among Chinese Women
Supplementary Tables from Identification of Novel Variants in Colorectal Cancer Families by High-Throughput Exome Sequencing
Authors: DeRycke Melissa S. , Gunawardena Shanaka R. , Middha Sumit , Asmann Yan W. , Schaid Daniel J. , McDonnell Shannon K. , Riska Shaun M. , Eckloff Bruce W. , Cunningham Julie M. , Fridley Brooke L. , Serie Daniel J. , Bamlet William R. , Cicek Mine S. , Jenkins Mark A. , Duggan David J. , Buchanan Daniel , Clendenning Mark , Haile Robert W. , Woods Michael O. , Gallinger Steven N. , Casey Graham , Potter John D. , Newcomb Polly A. , Le Marchand Loïc , Lindor Noralane M. , Thibodeau Stephen N. , Goode Ellen L.
Published: April 2023

Supplementary Tables - PDF file 193K, File contains Tables S1-S11
Supplementary Table 2 from Factorial Validity and Invariance of Four Psychosocial Constructs of Colorectal Cancer Screening: Does Screening Experience Matter?
Authors: Murphy Caitlin C. , McQueen Amy , Bartholomew L. Kay , del Junco Deborah J. , Coan Sharon P. , Vernon Sally W.
Published: April 2023

PDF - 133KB, Covariance matrix for overdue subgroup (n=418).
Description of supplementary files from Identification of Novel Variants in Colorectal Cancer Families by High-Throughput Exome Sequencing
Authors: DeRycke Melissa S. , Gunawardena Shanaka R. , Middha Sumit , Asmann Yan W. , Schaid Daniel J. , McDonnell Shannon K. , Riska Shaun M. , Eckloff Bruce W. , Cunningham Julie M. , Fridley Brooke L. , Serie Daniel J. , Bamlet William R. , Cicek Mine S. , Jenkins Mark A. , Duggan David J. , Buchanan Daniel , Clendenning Mark , Haile Robert W. , Woods Michael O. , Gallinger Steven N. , Casey Graham , Potter John D. , Newcomb Polly A. , Le Marchand Loïc , Lindor Noralane M. , Thibodeau Stephen N. , Goode Ellen L.
Published: April 2023

Description of supplementary files - PDF file 44K, File contains description of supplementary files.
Supplementary Figure 1 from Impact of Treatment Exposures on Cardiovascular Risk and Insulin Resistance in Childhood Cancer Survivors
Authors: Baker K. Scott , Chow Eric J. , Goodman Pamela J. , Leisenring Wendy M. , Dietz Andrew C. , Perkins Joanna L. , Chow Lisa , Sinaiko Alan , Moran Antoinette , Petryk Anna , Steinberger Julia
Published: April 2023

PDF - 26KB, Consort Diagram of study participants.
Supplemental Tables S1-S4 from Chronic Recreational Physical Inactivity and Epithelial Ovarian Cancer Risk: Evidence from the Ovarian Cancer Association Consortium
Authors: Cannioto Rikki , LaMonte Michael J. , Risch Harvey A. , Hong Chi-Chen , Sucheston-Campbell Lara E. , Eng Kevin H. , Brian Szender J. , Chang-Claude Jenny , Schmalfeldt Barbara , Klapdor Ruediger , Gower Emily , Minlikeeva Albina N. , Zirpoli Gary R. , Bandera Elisa V. , Berchuck Andrew , Cramer Daniel , Doherty Jennifer A. , Edwards Robert P. , Fridley Brooke L. , Goode Ellen L. , Goodman Marc T. , Hogdall Estrid , Hosono Satoyo , Jensen Allan , Jordan Susan , Kjaer Susanne K. , Matsuo Keitaro , Ness Roberta B. , Olsen Catherine M. , Olson Sara H. , Leigh Pearce Celeste , Pike Malcolm C. , Anne Rossing Mary , Szamreta Elizabeth A. , Thompson Pamela J. , Tseng Chiu-Chen , Vierkant Robert A. , Webb Penelope M. , Wentzensen Nicolas , Wicklund Kristine G. , Winham Stacey J. , Wu Anna H. , Modugno Francesmary , Schildkraut Joellen M. , Terry Kathryn L. , Kelemen Linda E. , Moysich Kirsten B.
Published: April 2023

Supplemental Table S1. Pooled Odds Ratios and 95% Confidence Intervals Representing the Association Between Physical Inactivity and Epithelial Ovarian Cancer by Menopause Status. Supplemental Table S2. Age-Adjusted And Multivariable-Adjusted Pooled Odds Ratios And 95% Confidence Intervals (CI) Representing The Association Between Physical Inactivity And Epithelial Ovarian Cancer By Race. Supplemental Table S3. Pooled odds ratios and 95% confidence intervals representing the association between physical inactivity and epithelial ovarian cancer by standard BMI classification. Supplemental Table S4. Pooled odds ratios and 95% confidence intervals representing the association between physical inactivity and epithelial ovarian cancer by dichotomous BMI classification
Associations between statin use, dose and type and prostate cancer aggressiveness, overall and stratified by race, excluding men who were using non-statin cholesterol-lowering drugs. from Statin Use and Prostate Cancer Aggressiveness: Results from the Population-Based North Carolina–Louisiana Prostate Cancer Project
Authors: Allott Emma H. , Farnan Laura , Steck Susan E. , Arab Lenore , Su L. Joseph , Mishel Merle , Fontham Elizabeth T.H. , Mohler James L. , Bensen Jeannette T.
Published: April 2023

Logistic regression analysis of associations between statin use and prostate cancer aggressiveness, excluding men using non-statin cholesterol-lowering drugs.
Supplementary Table 4 from Adolescents and Young Adults with Acute Lymphoblastic Leukemia and Acute Myeloid Leukemia: Impact of Care at Specialized Cancer Centers on Survival Outcome
Authors: Wolfson Julie , Sun Can-Lan , Wyatt Laura , Stock Wendy , Bhatia Smita
Published: April 2023

Hazard of Death: Excluding Mixed Practice Sites
Supplementary Figure 1 from Adolescents and Young Adults with Acute Lymphoblastic Leukemia and Acute Myeloid Leukemia: Impact of Care at Specialized Cancer Centers on Survival Outcome
Authors: Wolfson Julie , Sun Can-Lan , Wyatt Laura , Stock Wendy , Bhatia Smita
Published: April 2023

Description of Practice Sites
Supplementary tables 1-3. Supplementary figures 1-4. from PIWI-Interacting RNAs in Gliomagenesis: Evidence from Post-GWAS and Functional Analyses
Authors: Jacobs Daniel I. , Qin Qin , Lerro Michael C. , Fu Alan , Dubrow Robert , Claus Elizabeth B. , DeWan Andrew T. , Wang Guilin , Lin Haifan , Zhu Yong
Published: April 2023

Supplementary Table 1. Primers used for qPCR reactions and piRNA mimics used for in vitro functional analyses.Supplementary Table 2. Characteristics of GliomaScan subjects included in piRNA SNP imputation and association analysis. Supplementary Table 3. Differentially expressed transcripts 24-hours post piR-598-WT or NC transfection in U87 (FDR-adjusted P < 0.05) by fold-change. Supplementary Figure 1. Flowchart of piRNA SNP selection, imputation, and analysis for association study. Supplementary Figure 2. Quantile-quantile (QQ) plot of observed vs. expected chi-square distribution from association analysis of input genotyping data. Supplementary Figure 3. piR-18913, piR-598, piR-11714, and piR-3266 expression in U87, A172, and NHA cell lines by qPCR. Supplementary Figure 4. Expression array validation results. Five genes were selected for validation of expression array results by qPCR.
Supplementary Materials and Methods from The Cumulative Risk of False-Positive Fecal Occult Blood Test after 10 Years of Colorectal Cancer Screening
Authors: Hubbard Rebecca A. , Johnson Eric , Hsia Raymond , Rutter Carolyn M.
Published: April 2023

PDF - 98K, We used a censoring-bias adjusted discrete survival model for cumulative false positive probability that allows for variation in false-positive risk as a function of covariates, screening round number, and round at which a subject was censored.
Supplementary materials (clean version) from A Pilot Randomized Controlled Trial of the Feasibility, Acceptability, and Impact of Giving Information on Personalized Genomic Risk of Melanoma to the Public
Authors: Smit Amelia K. , Espinoza David , Newson Ainsley J. , Morton Rachael L. , Fenton Georgina , Freeman Lucinda , Dunlop Kate , Butow Phyllis N. , Law Matthew H. , Kimlin Michael G. , Keogh Louise A. , Dobbinson Suzanne J. , Kirk Judy , Kanetsky Peter A. , Mann Graham J. , Cust Anne E.
Published: April 2023

Supplementary file (clean version) including Supplementary text on Materials and Methods, and the following tables: Supplementary Table 1. Genomic variants included in the genomic risk estimates and their published associations with melanoma. Supplementary Table 2. Sun Protection Index: Individual items. Supplementary Table 3. Preliminary effect of the intervention on resource use and costs at 3-months.
Personalised risk booklet - an example from A Pilot Randomized Controlled Trial of the Feasibility, Acceptability, and Impact of Giving Information on Personalized Genomic Risk of Melanoma to the Public
Authors: Smit Amelia K. , Espinoza David , Newson Ainsley J. , Morton Rachael L. , Fenton Georgina , Freeman Lucinda , Dunlop Kate , Butow Phyllis N. , Law Matthew H. , Kimlin Michael G. , Keogh Louise A. , Dobbinson Suzanne J. , Kirk Judy , Kanetsky Peter A. , Mann Graham J. , Cust Anne E.
Published: April 2023

A copy of a booklet communicating personalised risk of melanoma.
Supplementary Table 1 from Fine-mapping of the 5p15.33, 6p22.1-p21.31, and 15q25.1 Regions Identifies Functional and Histology-Specific Lung Cancer Susceptibility Loci in African-Americans
Authors: Walsh Kyle M. , Gorlov Ivan P. , Hansen Helen M. , Wu Xifeng , Spitz Margaret R. , Zhang Huifeng , Lu Emily Y. , Wenzlaff Angela S. , Sison Jennette D. , Wei Chongjuan , Lloyd Stacy M. , Chen Wei , Frazier Marsha L. , Seldin Michael F. , Bierut Laura J. , Bracci Paige M. , Wrensch Margaret R. , Schwartz Ann G. , Wiencke John K. , Amos Christopher I.
Published: April 2023

PDF file - 67K, Imputed SNP associations from the case-control analysis of lung cancer (by histology) in African-Americans (P<0.01)
Supplementary Figure Legend from Fine-mapping of the 5p15.33, 6p22.1-p21.31, and 15q25.1 Regions Identifies Functional and Histology-Specific Lung Cancer Susceptibility Loci in African-Americans
Authors: Walsh Kyle M. , Gorlov Ivan P. , Hansen Helen M. , Wu Xifeng , Spitz Margaret R. , Zhang Huifeng , Lu Emily Y. , Wenzlaff Angela S. , Sison Jennette D. , Wei Chongjuan , Lloyd Stacy M. , Chen Wei , Frazier Marsha L. , Seldin Michael F. , Bierut Laura J. , Bracci Paige M. , Wrensch Margaret R. , Schwartz Ann G. , Wiencke John K. , Amos Christopher I.
Published: April 2023

PDF file - 57K
Supplementary Figure 3 from Fine-mapping of the 5p15.33, 6p22.1-p21.31, and 15q25.1 Regions Identifies Functional and Histology-Specific Lung Cancer Susceptibility Loci in African-Americans
Authors: Walsh Kyle M. , Gorlov Ivan P. , Hansen Helen M. , Wu Xifeng , Spitz Margaret R. , Zhang Huifeng , Lu Emily Y. , Wenzlaff Angela S. , Sison Jennette D. , Wei Chongjuan , Lloyd Stacy M. , Chen Wei , Frazier Marsha L. , Seldin Michael F. , Bierut Laura J. , Bracci Paige M. , Wrensch Margaret R. , Schwartz Ann G. , Wiencke John K. , Amos Christopher I.
Published: April 2023

PDF file - 559K, Association of SNPs on chromosome 15q25.1 with lung cancer, with and without adjustment for pack-years smoked. Black circles depict association of SNPs with lung cancer, adjusted for sex, age, study site, % African ancestry, % European ancestry, and number of pack-years smoked. Open squares depict association of SNPs with lung cancer, adjusted for sex, age, study site, and % African ancestry, % European ancestry, but NOT number of pack-years smoked.