bluuebunny/crossref_metadata_2025 huggingface dataset:
Supplementary Figure Legends 1-10 from Metastasis Suppressor NM23-H1 Promotes Repair of UV-Induced DNA Damage and Suppresses UV-Induced Melanomagenesis
Authors: Jarrett Stuart G. , Novak Marian , Dabernat Sandrine , Daniel Jean-Yves , Mellon Isabel , Zhang Qingbei , Harris Nathan , Ciesielski Michael J. , Fenstermaker Robert A. , Kovacic Diane , Slominski Andrzej , Kaetzel David M.
Published: April 2023

PDF file - 111K
Supplementary Figure 8 from Metastasis Suppressor NM23-H1 Promotes Repair of UV-Induced DNA Damage and Suppresses UV-Induced Melanomagenesis
Authors: Jarrett Stuart G. , Novak Marian , Dabernat Sandrine , Daniel Jean-Yves , Mellon Isabel , Zhang Qingbei , Harris Nathan , Ciesielski Michael J. , Fenstermaker Robert A. , Kovacic Diane , Slominski Andrzej , Kaetzel David M.
Published: April 2023

PDF file - 62K
Supplementary Figure 6 from Metastasis Suppressor NM23-H1 Promotes Repair of UV-Induced DNA Damage and Suppresses UV-Induced Melanomagenesis
Authors: Jarrett Stuart G. , Novak Marian , Dabernat Sandrine , Daniel Jean-Yves , Mellon Isabel , Zhang Qingbei , Harris Nathan , Ciesielski Michael J. , Fenstermaker Robert A. , Kovacic Diane , Slominski Andrzej , Kaetzel David M.
Published: April 2023

PDF file - 109K
Supplementary Figure 4 from Critical Function for Nuclear Envelope Protein TMEM209 in Human Pulmonary Carcinogenesis
Authors: Fujitomo Takashi , Daigo Yataro , Matsuda Koichi , Ueda Koji , Nakamura Yusuke
Published: April 2023

PDF file - 61K, Expression of CDC25A and CDK1 in clinical lung cancer samples
Supplementary Figure Legend from Cancer Angiogenesis Induced by Kaposi Sarcoma–Associated Herpesvirus Is Mediated by EZH2
Authors: He Meilan , Zhang Wei , Bakken Thomas , Schutten Melissa , Toth Zsolt , Jung Jae U. , Gill Parkash , Cannon Mark , Gao Shou-Jiang
Published: April 2023

PDF file - 32K
Supplementary Figure 1 from Receptor Tyrosine Kinase Genes Amplified in Glioblastoma Exhibit a Mutual Exclusivity in Variable Proportions Reflective of Individual Tumor Heterogeneity
Authors: Little Suzanne E. , Popov Sergey , Jury Alexa , Bax Dorine A. , Doey Lawrence , Al-Sarraj Safa , Jurgensmeier Juliane M. , Jones Chris
Published: April 2023

PDF file - 2.6MB
Supplementary Figures 1-11 from Mitochondria-Targeted Drugs Synergize with 2-Deoxyglucose to Trigger Breast Cancer Cell Death
Authors: Cheng Gang , Zielonka Jacek , Dranka Brian P. , McAllister Donna , Mackinnon A. Craig , Joseph Joy , Kalyanaraman Balaraman
Published: April 2023

PDF file - 990K
Supplementary Figure 3 from Interleukin-17 Promotes Formation and Growth of Prostate Adenocarcinoma in Mouse Models
Authors: Zhang Qiuyang , Liu Sen , Ge Dongxia , Zhang Qingsong , Xue Yun , Xiong Zhenggang , Abdel-Mageed Asim B. , Myers Leann , Hill Steven M. , Rowan Brian G. , Sartor Oliver , Melamed Jonathan , Chen Zhenbang , You Zongbing
Published: April 2023

PDF file - 7.6MB, A. Thickness of stroma surrounding each gland in different mouse postatic lobes. B. MMP7 staining in the dorsal prostatic lobes.
Supplementary Figure Legend from Reprogramming Tumor-Associated Dendritic Cells In Vivo Using miRNA Mimetics Triggers Protective Immunity against Ovarian Cancer
Authors: Cubillos-Ruiz Juan R. , Baird Jason R. , Tesone Amelia J. , Rutkowski Melanie R. , Scarlett Uciane K. , Camposeco-Jacobs Ana L. , Anadon-Arnillas Jorge , Harwood Noah M. , Korc Murray , Fiering Steven N. , Sempere Lorenzo F. , Conejo-Garcia Jose R.
Published: April 2023

PDF file - 76K
Supplementary Table 1 from Functional Interaction between Responses to Lactic Acidosis and Hypoxia Regulates Genomic Transcriptional Outputs
Authors: Tang Xiaohu , Lucas Joseph E. , Chen Julia Ling-Yu , LaMonte Gregory , Wu Jianli , Wang Michael Changsheng , Koumenis Constantinos , Chi Jen-Tsan
Published: April 2023

XLS file - 84K
Supplementary Methods, Legends for Figures 1-4, Tables 1-5 from Functional Interaction between Responses to Lactic Acidosis and Hypoxia Regulates Genomic Transcriptional Outputs
Authors: Tang Xiaohu , Lucas Joseph E. , Chen Julia Ling-Yu , LaMonte Gregory , Wu Jianli , Wang Michael Changsheng , Koumenis Constantinos , Chi Jen-Tsan
Published: April 2023

PDf file - 74K
Supplementary Figure 6 from Perturbation of Rb, p53, and Brca1 or Brca2 Cooperate in Inducing Metastatic Serous Epithelial Ovarian Cancer
Authors: Szabova Ludmila , Yin Chaoying , Bupp Sujata , Guerin Theresa M. , Schlomer Jerome J. , Householder Deborah B. , Baran Maureen L. , Yi Ming , Song Yurong , Sun Wenping , McDunn Jonathan E. , Martin Philip L. , Van Dyke Terry , Difilippantonio Simone
Published: April 2023

PDF file - 267K, Widespread metabolomic alterations consistent with tumor development are found in blood of SEOC mice compared to wild type mice
Supplementary Figure 4 from Mesenchymal Stromal Cell Mutations and Wound Healing Contribute to the Etiology of Desmoid Tumors
Authors: Carothers Adelaide M. , Rizvi Hira , Hasson Rian M. , Heit Yvonne I. , Davids Jennifer S. , Bertagnolli Monica M. , Cho Nancy L.
Published: April 2023

PDf file - 2.4MB, DT-derived MSCs expressed TGFβ1, 2, 3, active β integrin, and displayed a prominent filamentous actin cytoskeleton. Fluorescent immunohistochemistry of DT-derived MSCs showed predominantly cell surface and cytoplasmic staining for TGFβ1, 2, 3 (top, red), and the active form of β1 integrin (bottom, red) (A). Alexa Fluor 568-labeled phalloidin, which binds to F-actin, showed that DT-derived MSCs are characterized by a prominent cytoskeleton (B). Original magnification for TGFβ1, 2, 3 was 40X. Images for active β1 integrin and phalloidin were taken at 60X.
Supplementary Figures 1-2 from Kidney Tumor Biomarkers Revealed by Simultaneous Multiple Matrix Metabolomics Analysis
Authors: Ganti Sheila , Taylor Sandra L. , Abu Aboud Omran , Yang Joy , Evans Christopher , Osier Michael V. , Alexander Danny C. , Kim Kyoungmi , Weiss Robert H.
Published: April 2023

PDF file - 74K, The PPAR-alpha agonist Wy-14,643 decreases tryptophan and increases nicotinamide levels in vitro 2. The IDO inhibitor 1-MT increases tryptophan levels in vitro
Supplementary Figure 2 from Primary Tumor Hypoxia Recruits CD11b+/Ly6Cmed/Ly6G+ Immune Suppressor Cells and Compromises NK Cell Cytotoxicity in the Premetastatic Niche
Authors: Sceneay Jaclyn , Chow Melvyn T. , Chen Anna , Halse Heloise M. , Wong Christina S.F. , Andrews Daniel M. , Sloan Erica K. , Parker Belinda S. , Bowtell David D. , Smyth Mark J. , Möller Andreas
Published: April 2023

PDF file - 221K, A) Pre-metastatic niche induced by hypoxia increases melanoma metastasis. B) Factors identified in HCM of breast cancer cells
Supplementary Table 1 from Suppression of Tak1 Promotes Prostate Tumorigenesis
Authors: Wu Min , Shi Lihong , Cimic Adela , Romero Lina , Sui Guangchao , Lees Cynthia J. , Cline J. Mark , Seals Darren F. , Sirintrapun Joseph S. , McCoy Thomas P. , Liu Wennuan , Kim Jin Woo , Hawkins Gregory A. , Peehl Donna M. , Xu Jianfeng , Cramer Scott D.
Published: April 2023

PDF file - 139K, Expression of Tak1 is progressively lost with increasing Gleason grade both within each cancer and across cancers.
Supplementary Methods, Legends for Tables 1-2, Figures 1-4 from Suppression of Tak1 Promotes Prostate Tumorigenesis
Authors: Wu Min , Shi Lihong , Cimic Adela , Romero Lina , Sui Guangchao , Lees Cynthia J. , Cline J. Mark , Seals Darren F. , Sirintrapun Joseph S. , McCoy Thomas P. , Liu Wennuan , Kim Jin Woo , Hawkins Gregory A. , Peehl Donna M. , Xu Jianfeng , Cramer Scott D.
Published: April 2023

PDF file - 110K
Supplementary Figure 4 from Suppression of Tak1 Promotes Prostate Tumorigenesis
Authors: Wu Min , Shi Lihong , Cimic Adela , Romero Lina , Sui Guangchao , Lees Cynthia J. , Cline J. Mark , Seals Darren F. , Sirintrapun Joseph S. , McCoy Thomas P. , Liu Wennuan , Kim Jin Woo , Hawkins Gregory A. , Peehl Donna M. , Xu Jianfeng , Cramer Scott D.
Published: April 2023

PDF file - 1MB, Complete lineage differentiation of shControl cells in vivo.
Supplementary Figure 2 from Suppression of Tak1 Promotes Prostate Tumorigenesis
Authors: Wu Min , Shi Lihong , Cimic Adela , Romero Lina , Sui Guangchao , Lees Cynthia J. , Cline J. Mark , Seals Darren F. , Sirintrapun Joseph S. , McCoy Thomas P. , Liu Wennuan , Kim Jin Woo , Hawkins Gregory A. , Peehl Donna M. , Xu Jianfeng , Cramer Scott D.
Published: April 2023

PDF file - 1MB, Hemizygous deletion of MAP3K7 in human prostatic tumorigenic cell lines.
Supplementary Figure 2 from Antigen Shedding May Improve Efficiencies for Delivery of Antibody-Based Anticancer Agents in Solid Tumors
Authors: Pak Youngshang , Zhang Yujian , Pastan Ira , Lee Byungkook
Published: April 2023

PDF file - 66K, Kinetic steps that control the surface receptor concentration
Supplementary Figure Legends 1-7 from ATR–ATRIP Kinase Complex Triggers Activation of the Fanconi Anemia DNA Repair Pathway
Authors: Shigechi Tomoko , Tomida Junya , Sato Koichi , Kobayashi Masahiko , Eykelenboom John K. , Pessina Fabio , Zhang Yanbin , Uchida Emi , Ishiai Masamichi , Lowndes Noel F. , Yamamoto Kenichi , Kurumizaka Hitoshi , Maehara Yoshihiko , Takata Minoru
Published: April 2023

PDF file - 98K
Supplementary Methods, Figure Legends 1-4 from AMPK Promotes p53 Acetylation via Phosphorylation and Inactivation of SIRT1 in Liver Cancer Cells
Authors: Lee Chi-Wai , Wong Leo Lap-Yan , Tse Edith Yuk-Ting , Liu Heong-Fai , Leong Veronica Yee-Law , Lee Joyce Man-Fong , Hardie D. Grahame , Ng Irene Oi-Lin , Ching Yick-Pang
Published: April 2023

PDF file - 105K
Supplementary Figure 1 from AMPK Promotes p53 Acetylation via Phosphorylation and Inactivation of SIRT1 in Liver Cancer Cells
Authors: Lee Chi-Wai , Wong Leo Lap-Yan , Tse Edith Yuk-Ting , Liu Heong-Fai , Leong Veronica Yee-Law , Lee Joyce Man-Fong , Hardie D. Grahame , Ng Irene Oi-Lin , Ching Yick-Pang
Published: April 2023

PDF file - 28K, Underexpression of AMPK-lowercase alpha2 protein in HCC samples
sSupplementary Figure Legends 1-3 from Accumulation of Multipotent Progenitors with a Basal Differentiation Bias during Aging of Human Mammary Epithelia
Authors: Garbe James C. , Pepin Francois , Pelissier Fanny A. , Sputova Klara , Fridriksdottir Agla J. , Guo Diana E. , Villadsen Rene , Park Morag , Petersen Ole W. , Borowsky Alexander D. , Stampfer Martha R. , LaBarge Mark A.
Published: April 2023

PDF file - 62K
Supplementary Table 2 from Ribonucleotide Reductase Small Subunit M2B Prognoses Better Survival in Colorectal Cancer
Authors: Liu Xiyong , Lai Lily , Wang Xiaochen , Xue Lijun , Leora Sofia , Wu Jun , Hu Shuya , Zhang Keqiang , Kuo Mei-Ling , Zhou Lun , Zhang Hang , Wang Yafan , Wang Yan , Zhou Bingsen , Nelson Rebecca A. , Zheng Shu , Zhang Suzhan , Chu Peiguo , Yen Yun
Published: April 2023

Supplementary Table 2 from Ribonucleotide Reductase Small Subunit M2B Prognoses Better Survival in Colorectal Cancer
Supplementary Figure 2 from Fibroblast-Derived Dermal Matrix Drives Development of Aggressive Cutaneous Squamous Cell Carcinoma in Patients with Recessive Dystrophic Epidermolysis Bullosa
Authors: Ng Yi-Zhen , Pourreyron Celine , Salas-Alanis Julio C. , Dayal Jasbani H.S. , Cepeda-Valdes Rodrigo , Yan Wenfei , Wright Sheila , Chen Mei , Fine Jo-David , Hogg Fiona J. , McGrath John A. , Murrell Dedee F. , Leigh Irene M. , Lane E. Birgit , South Andrew P.
Published: April 2023

PDF file - 190K, A: RDEBSCCF derived matrix promotes adhesion of keratinocytes compared with matrix derived from other fibroblast groups (* = p<0.01). All data normalized to collagen I adhesion, results are the mean of three separate experiments performed in quintuplicate �SD, n=3-5 per fibroblast sample group. B-E: Keratinocyte adhesion to cell derived matrix from the indicated fibroblast samples. Each graph combines the results from up to three experiments for each keratinocyte group as indicated, mean �SD performed in quintuplicate. NHK = immortalized normal keratinocyte lines (NHK38 spontaneous immortalized foreskin, Thai5 HPV immortalized axilla), UVSCCK = spontaneously immortalized UV cSCC keratinocytes (6), RDEBK = HPV immortalized RDEB keratinocytes, RDEBSCCK = spontaneously immortalized RDEB cSCC keratinocytes (6). Fibroblast sample details are given in Supplementary Data Table 1.
Supplementary Figure 1 from Fibroblast-Derived Dermal Matrix Drives Development of Aggressive Cutaneous Squamous Cell Carcinoma in Patients with Recessive Dystrophic Epidermolysis Bullosa
Authors: Ng Yi-Zhen , Pourreyron Celine , Salas-Alanis Julio C. , Dayal Jasbani H.S. , Cepeda-Valdes Rodrigo , Yan Wenfei , Wright Sheila , Chen Mei , Fine Jo-David , Hogg Fiona J. , McGrath John A. , Murrell Dedee F. , Leigh Irene M. , Lane E. Birgit , South Andrew P.
Published: April 2023

PDF file - 56K, Unsupervised clustering of the core serum response gene set is able to cluster NHF but not RDEBSCCF sample groups in culture
Supplementary Figure 1 from FLT-PET Is Superior to FDG-PET for Very Early Response Prediction in NPM-ALK-Positive Lymphoma Treated with Targeted Therapy
Authors: Li Zhoulei , Graf Nicolas , Herrmann Ken , Jünger Alexandra , Aichler Michaela , Feuchtinger Annette , Baumgart Anja , Walch Axel , Peschel Christian , Schwaiger Markus , Buck Andreas , Keller Ulrich , Dechow Tobias
Published: April 2023

PDF file - 96K, FLT uptake is a sensitive measure for response to HSP90 inhibition in NPM-ALK overexpressing lymphoma cells in vitro
Supplementary Figure Legends 1-6 from BRAF Inhibitor Vemurafenib Improves the Antitumor Activity of Adoptive Cell Immunotherapy
Authors: Koya Richard C. , Mok Stephen , Otte Nicholas , Blacketor Kevin J. , Comin-Anduix Begonya , Tumeh Paul C. , Minasyan Aspram , Graham Nicholas A. , Graeber Thomas G. , Chodon Thinle , Ribas Antoni
Published: April 2023

PDF file - 66K
Supplementary Figure 3 from Clusterin Mediates TGF-β–Induced Epithelial–Mesenchymal Transition and Metastasis via Twist1 in Prostate Cancer Cells
Authors: Shiota Masaki , Zardan Anousheh , Takeuchi Ario , Kumano Masafumi , Beraldi Eliana , Naito Seiji , Zoubeidi Amina , Gleave Martin E.
Published: April 2023

PDF file - 48K, PC-3 cells were transfected with 40 nmol/L of the indicated siRNA. At 48 h after transfection, the media was changed to serum-free media +/- 0.1 ng/mL TGF-beta, and incubated for 24 h. Whole-cell extracts were analyzed by SDS-PAGE and western blot analysis with specified antibodies
Supplementary Figure 4 from BRAF Inhibitor Vemurafenib Improves the Antitumor Activity of Adoptive Cell Immunotherapy
Authors: Koya Richard C. , Mok Stephen , Otte Nicholas , Blacketor Kevin J. , Comin-Anduix Begonya , Tumeh Paul C. , Minasyan Aspram , Graham Nicholas A. , Graeber Thomas G. , Chodon Thinle , Ribas Antoni
Published: April 2023

PDF file - 77K, 18FFAC PET imaging of adoptively transferred splenocytes with or without vemurafenib
Supplementary Table 1 from Collaboration of Kras and Androgen Receptor Signaling Stimulates EZH2 Expression and Tumor-Propagating Cells in Prostate Cancer
Authors: Cai Houjian , Memarzadeh Sanaz , Stoyanova Tanya , Beharry Zanna , Kraft Andrew S. , Witte Owen N.
Published: April 2023

PDF file, 28K, Distinctive features of three tumors derived from mutual synergy of over-expression of AR and activation of Kras and Akt signaling pathways.
Supplementary Figure 1 from BRAF Inhibitor Vemurafenib Improves the Antitumor Activity of Adoptive Cell Immunotherapy
Authors: Koya Richard C. , Mok Stephen , Otte Nicholas , Blacketor Kevin J. , Comin-Anduix Begonya , Tumeh Paul C. , Minasyan Aspram , Graham Nicholas A. , Graeber Thomas G. , Chodon Thinle , Ribas Antoni
Published: April 2023

PDF file - 117K, Analysis of melanoma-like genome-wide DNA copy number alterations in the SM1 cell line
Supplementary Figure 4 from Collaboration of Kras and Androgen Receptor Signaling Stimulates EZH2 Expression and Tumor-Propagating Cells in Prostate Cancer
Authors: Cai Houjian , Memarzadeh Sanaz , Stoyanova Tanya , Beharry Zanna , Kraft Andrew S. , Witte Owen N.
Published: April 2023

PDF file, 152K, Synergy of Kras(G12D) and AR in generating advanced prostate tumors from FACS sorted primary cells.
Supplementary Figure 2 from Collaboration of Kras and Androgen Receptor Signaling Stimulates EZH2 Expression and Tumor-Propagating Cells in Prostate Cancer
Authors: Cai Houjian , Memarzadeh Sanaz , Stoyanova Tanya , Beharry Zanna , Kraft Andrew S. , Witte Owen N.
Published: April 2023

PDF file, 157K, IHC analysis of regenerated tissues.
Supplementary Figure 2 from Identification of an Epigenetic Profile Classifier That Is Associated with Survival in Head and Neck Cancer
Authors: Poage Graham M. , Butler Rondi A. , Houseman E. Andrés , McClean Michael D. , Nelson Heather H. , Christensen Brock C. , Marsit Carmen J. , Kelsey Karl T.
Published: April 2023

PDF file - 44K, Comparison of hyper- and hypomethylated CpG loci among each of the patient methylation subgroups
Supplementary Tables 1-6, Figures 1-4 from N-Myc Regulates Expression of the Detoxifying Enzyme Glutathione Transferase GSTP1, a Marker of Poor Outcome in Neuroblastoma
Authors: Fletcher Jamie I. , Gherardi Samuele , Murray Jayne , Burkhart Catherine A. , Russell Amanda , Valli Emanuele , Smith Janice , Oberthuer André , Ashton Lesley J. , London Wendy B. , Marshall Glenn M. , Norris Murray D. , Perini Giovanni , Haber Michelle
Published: April 2023

PDF file - 318K
Supplementary Methods from Resistance to Selective BRAF Inhibition Can Be Mediated by Modest Upstream Pathway Activation
Authors: Su Fei , Bradley William D. , Wang Qiongqing , Yang Hong , Xu Lizhong , Higgins Brian , Kolinsky Kenneth , Packman Kathryn , Kim Min Jung , Trunzer Kerstin , Lee Richard J. , Schostack Kathleen , Carter Jade , Albert Thomas , Germer Soren , Rosinski Jim , Martin Mitchell , Simcox Mary Ellen , Lestini Brian , Heimbrook David , Bollag Gideon
Published: April 2023

PDF file - 82K
Supplementary Figure Legends 1-3 from Targeting eNOS in Pancreatic Cancer
Authors: Lampson Benjamin L. , Kendall S. DiSean , Ancrile Brooke B. , Morrison Meghan M. , Shealy Michael J. , Barrientos Katharine S. , Crowe Matthew S. , Kashatus David F. , White Rebekah R. , Gurley Susan B. , Cardona Diana M. , Counter Christopher M.
Published: April 2023

PDF file - 57K
Supplementary Figure 4 from Resistance to Selective BRAF Inhibition Can Be Mediated by Modest Upstream Pathway Activation
Authors: Su Fei , Bradley William D. , Wang Qiongqing , Yang Hong , Xu Lizhong , Higgins Brian , Kolinsky Kenneth , Packman Kathryn , Kim Min Jung , Trunzer Kerstin , Lee Richard J. , Schostack Kathleen , Carter Jade , Albert Thomas , Germer Soren , Rosinski Jim , Martin Mitchell , Simcox Mary Ellen , Lestini Brian , Heimbrook David , Bollag Gideon
Published: April 2023

PDF file - 89K
Supplementary Figure 2 from Targeting eNOS in Pancreatic Cancer
Authors: Lampson Benjamin L. , Kendall S. DiSean , Ancrile Brooke B. , Morrison Meghan M. , Shealy Michael J. , Barrientos Katharine S. , Crowe Matthew S. , Kashatus David F. , White Rebekah R. , Gurley Susan B. , Cardona Diana M. , Counter Christopher M.
Published: April 2023

PDF file - 243K, Tumorigenic growth of human pancreatic cancer cell lines treated with L-NAME
Supplementary Figure 1 from Targeting eNOS in Pancreatic Cancer
Authors: Lampson Benjamin L. , Kendall S. DiSean , Ancrile Brooke B. , Morrison Meghan M. , Shealy Michael J. , Barrientos Katharine S. , Crowe Matthew S. , Kashatus David F. , White Rebekah R. , Gurley Susan B. , Cardona Diana M. , Counter Christopher M.
Published: April 2023

PDF file - 243K, eNOS is upregulated in human pancreatic cancers
Supplementary Figures 1-4, Tables 1-3 from Leptin Mediates Tumor–Stromal Interactions That Promote the Invasive Growth of Breast Cancer Cells
Authors: Barone Ines , Catalano Stefania , Gelsomino Luca , Marsico Stefania , Giordano Cinzia , Panza Salvatore , Bonofiglio Daniela , Bossi Gianluca , Covington Kyle R. , Fuqua Suzanne A.W. , Andò Sebastiano
Published: April 2023

PDF file - 285K
Supplementary Figures 1-9 from VEGF Exerts an Angiogenesis-Independent Function in Cancer Cells to Promote Their Malignant Progression
Authors: Cao Ying , E Guangqi , Wang Enfeng , Pal Krishnendu , Dutta Shamit K. , Bar-Sagi Dafna , Mukhopadhyay Debabrata
Published: April 2023

PDF file - 824K, 1) Supplementary Figure S1. VEGF knock down in RCC cells restricted the tumor size and induced a differentiation phenotype in vivo. 2) Supplementary Figure S2. VEGF knock down in RCC cells restricted the tumor phenotypes in vitro. 3) Supplementary Figure S3. VEGF knockdown did not affect 786-O and A-498 cell proliferation and apoptosis. 4) Supplementary Figure S4. Induction of VEGF shRNA ((+)Dox) reduced A-498 cells anchorage independent clonogenic ability. 5) Supplementary Figure S5. Low concentration (0.2ug/ml) Doxycycline did not have a significant effect on A-498 cell proliferation, apoptosis, differentiation, or tumor formation. 6) Supplementary Figure S6. Mouse xenograft model of VEGF in tumorigenesis using a GFP/RFP combination system. 7) Supplementary Figure S7. The distribution of GFP and RFP labeled cells and the vascular densities in the tumor tissue. 8) Supplementary Figure S8. ERK1/2 and AKT were activated by VEGF. 9) Supplementary Figure S9. Knockdown of SOS1/2 induced 786-O cells into a differentiation phenotype.
Supplementary Figure 5 from CCN6 Modulates BMP Signaling via the Smad-Independent TAK1/p38 Pathway, Acting to Suppress Metastasis of Breast Cancer
Authors: Pal Anupama , Huang Wei , Li Xin , Toy Kathy A. , Nikolovska-Coleska Zaneta , Kleer Celina G.
Published: April 2023

PDF file, 12K, CCN6 overexpression significantly decreased tumor growth in vivo.
Supplementary Table 2 from ESE3/EHF Controls Epithelial Cell Differentiation and Its Loss Leads to Prostate Tumors with Mesenchymal and Stem-like Features
Authors: Albino Domenico , Longoni Nicole , Curti Laura , Mello-Grand Maurizia , Pinton Sandra , Civenni Gianluca , Thalmann George , D'Ambrosio Gioacchino , Sarti Manuela , Sessa Fausto , Chiorino Giovanna , Catapano Carlo V. , Carbone Giuseppina M.
Published: April 2023

PDF file - 1MB, Genes differentially expressed in ESE3KD-PrECs compared to control PrECs
Supplementary Figure 2 from CCN6 Modulates BMP Signaling via the Smad-Independent TAK1/p38 Pathway, Acting to Suppress Metastasis of Breast Cancer
Authors: Pal Anupama , Huang Wei , Li Xin , Toy Kathy A. , Nikolovska-Coleska Zaneta , Kleer Celina G.
Published: April 2023

PDF file, 100K, A. Effect of CCN6 KD on P-Smad1, P-Smad5 and total proteins. CCN6 KD increased P-Smad1 while it downregulated P-Smad5. B. Immunoblot showing effective Smad1 siRNA inhibition in HME CCN6 KD and controls. β-Actin was used as loading control. Invasion assays show that Smad1 siRNA has not significant effect on invasion of CCN6 KD or control cells.
Supplementary Figures 1-7 from The T-cell Receptor Repertoire of Tumor-Infiltrating Regulatory T Lymphocytes Is Skewed Toward Public Sequences
Authors: Sainz-Perez Alexander , Lim Annick , Lemercier Brigitte , Leclerc Claude
Published: April 2023

PDF file - 10MB, Figures S1-S5 present the strategy of analysis and purification of tumor-infiltrating Treg and Teff cells as well as their phenotypes and BV - BJ usage. The Figures S6-S7 present the qualitative spectratyping analysis of CDR3 length profiles of T cells obtained from TC-1 and MO-5 tumor-bearing mice.
Supplementary Data 2 from An NMR Metabolomics Approach for the Diagnosis of Leptomeningeal Carcinomatosis
Authors: Cho Hye Rim , Wen He , Ryu Young Jin , An Yong Jin , Kim Hyo Cheol , Moon Woo Kyung , Han Moon Hee , Park Sunghyouk , Choi Seung Hong
Published: April 2023

PDF file - 133K, The OPLS-DA method
Supplementary Table 7 from Novel Theranostic Opportunities Offered by Characterization of Altered Membrane Lipid Metabolism in Breast Cancer Progression
Authors: Hilvo Mika , Denkert Carsten , Lehtinen Laura , Müller Berit , Brockmöller Scarlet , Seppänen-Laakso Tuulikki , Budczies Jan , Bucher Elmar , Yetukuri Laxman , Castillo Sandra , Berg Emilia , Nygren Heli , Sysi-Aho Marko , Griffin Julian L. , Fiehn Oliver , Loibl Sibylle , Richter-Ehrenstein Christiane , Radke Cornelia , Hyötyläinen Tuulia , Kallioniemi Olli , Iljin Kristiina , Orešič Matej
Published: April 2023

Supplementary Table 7 from Novel Theranostic Opportunities Offered by Characterization of Altered Membrane Lipid Metabolism in Breast Cancer Progression
Supplementary Figure Legends 1-6 from Transcriptional Signatures of Ral GTPase Are Associated with Aggressive Clinicopathologic Characteristics in Human Cancer
Authors: Smith Steven C. , Baras Alexander S. , Owens Charles R. , Dancik Garrett , Theodorescu Dan
Published: April 2023

PDF file - 79K
Supplementary Movie 1 from β1 Integrin Targeting Potentiates Antiangiogenic Therapy and Inhibits the Growth of Bevacizumab-Resistant Glioblastoma
Authors: Carbonell W. Shawn , DeLay Michael , Jahangiri Arman , Park Catherine C. , Aghi Manish K.
Published: April 2023

MOV file - 932K, Supplementary Movie 1. Beta1 Integrin Knockdown Impairs BRG Adhesion And Spreading. Related to Figure 2. Timelapse phase-contrast imaging of BRG3 bevacizumab-resistant cells on fibronectin demonstrates rapid adhesion and spreading of control (shCTRL, left) cells within 30 mins of plating. In contrast, significantly fewer beta1 integrin knockdown cells (shB1-c6, right) are able to adhere and spread. A subset of knockdown cells can be seen to float away due to impaired ability to adhere to the fibronectin substrate. Movie images captured with a 40x objective representing approximately 12 hours of imaging, 35 minutes between each frame.
Supplementary Video 10 from Basal but not Luminal Mammary Epithelial Cells Require PI3K/mTOR Signaling for Ras-Driven Overgrowth
Authors: Plichta Kristin A. , Mathers Jessica L. , Gestl Shelley A. , Glick Adam B. , Gunther Edward J.
Published: April 2023

MOV file - 2.4MB, Effects of mTor Inhibitor rapamycin on Ras-driven luminal MEC overgrowth. Representative video depicting an organoid prepared from a Dox-naive luminalRas/GFP (MMTV-rtTA/TGFP/TRAS) mouse cultured in the presence of both Dox and rapamycin in 3D
Supplementary Figure 1, Tables 1-3 from Inactivation of the Dlc1 Gene Cooperates with Downregulation of p15INK4b and p16Ink4a, Leading to Neoplastic Transformation and Poor Prognosis in Human Cancer
Authors: Qian Xiaolan , Durkin Marian E. , Wang Dunrui , Tripathi Brajendra K. , Olson Lyra , Yang Xu-Yu , Vass William C. , Popescu Nicholas C. , Lowy Douglas R.
Published: April 2023

PDF file - 304K, Suppl. Table 1: Validated siRNAs used in the current studies Suppl. Fig. 1 Stress fiber formation in MEFs with or without v-Ras expression. Suppl. Fig. 2 The spontaneous transformation is reproducible using another Adeno-Cre treated MEF line (MEF-B) derived from a different embryo with conditional DLC1 knock-out. Suppl. Fig. 3 The complete sets of Kaplan-Meier Analyses from lung and colon cancers
Supplementary Table 3 from p21-Activated Kinase 1 Is Required for Efficient Tumor Formation and Progression in a Ras-Mediated Skin Cancer Model
Authors: Chow Hoi Yee , Jubb Adrian M. , Koch Jennifer N. , Jaffer Zahara M. , Stepanova Dina , Campbell David A. , Duron Sergio G. , O'Farrell Marie , Cai Kathy Q. , Klein-Szanto Andres J.P. , Gutkind J. Silvio , Hoeflich Klaus P. , Chernoff Jonathan
Published: April 2023

PDF file - 58K, Specificity of Pak inhibitors
Supplementary Figure 1 from Targeting CD4+ T-Helper Cells Improves the Induction of Antitumor Responses in Dendritic Cell–Based Vaccination
Authors: Aarntzen Erik H.J.G. , De Vries I. Jolanda M. , Lesterhuis W. Joost , Schuurhuis Danita , Jacobs Joannes F.M. , Bol Kalijn , Schreibelt Gerty , Mus Roel , De Wilt Johannes H.W. , Haanen John B.A.G. , Schadendorf Dirk , Croockewit Alexandra , Blokx Willeke A.M. , Van Rossum Michelle M. , Kwok William W. , Adema Gosse J. , Punt Cornelis J.A. , Figdor Carl G.
Published: April 2023

PDF file - 51K, CONSORT flow chart
Supplementary Information from Rab25 Is a Tumor Suppressor Gene with Antiangiogenic and Anti-Invasive Activities in Esophageal Squamous Cell Carcinoma
Authors: Tong Man , Chan Kwok Wah , Bao Jessie Y.J. , Wong Kai Yau , Chen Jin-Na , Kwan Pak Shing , Tang Kwan Ho , Fu Li , Qin Yan-Ru , Lok Si , Guan Xin-Yuan , Ma Stephanie
Published: April 2023

PDF file, 153K, Supplementary Materials and Methods, Tables, Figure Legends, References
Supplementary Figures 1-3 from Dysregulation of Ezrin Phosphorylation Prevents Metastasis and Alters Cellular Metabolism in Osteosarcoma
Authors: Ren Ling , Hong Sung-Hyeok , Chen Qing-Rong , Briggs Joseph , Cassavaugh Jessica , Srinivasan Satish , Lizardo Michael M. , Mendoza Arnulfo , Xia Ashley Y. , Avadhani Narayan , Khan Javed , Khanna Chand
Published: April 2023

PDF file - 848K
Supplementary Figure Legends 1-6, Table 1 from DNA Methylation Does Not Stably Lock Gene Expression but Instead Serves as a Molecular Mark for Gene Silencing Memory
Authors: Raynal Noël J.-M. , Si Jiali , Taby Rodolphe F. , Gharibyan Vazganush , Ahmed Saira , Jelinek Jaroslav , Estécio Marcos R.H. , Issa Jean-Pierre J.
Published: April 2023

PDf file - 92K
Supplementary Table 4 from Activation of Robo1 Signaling of Breast Cancer Cells by Slit2 from Stromal Fibroblast Restrains Tumorigenesis via Blocking PI3K/Akt/β-Catenin Pathway
Authors: Chang Po-Hao , Hwang-Verslues Wendy W. , Chang Yi-Cheng , Chen Chun-Chin , Hsiao Michael , Jeng Yung-Ming , Chang King-Jen , Lee Eva Y.-H.P. , Shew Jin-Yuh , Lee Wen-Hwa
Published: April 2023

PDF file, 25K, Characteristics of 162 breast cancer patients in the second cohort used to determine the clinical correlation of Robo1 protein expression (Fig. 6C).
Supplementary Table 3 from Activation of Robo1 Signaling of Breast Cancer Cells by Slit2 from Stromal Fibroblast Restrains Tumorigenesis via Blocking PI3K/Akt/β-Catenin Pathway
Authors: Chang Po-Hao , Hwang-Verslues Wendy W. , Chang Yi-Cheng , Chen Chun-Chin , Hsiao Michael , Jeng Yung-Ming , Chang King-Jen , Lee Eva Y.-H.P. , Shew Jin-Yuh , Lee Wen-Hwa
Published: April 2023

PDF file, 26K, Univariate and multivariate proportional hazards analysis of mortality of breast cancer patients of the second cohort.
Supplementary Figure 5 from DNA Methylation Does Not Stably Lock Gene Expression but Instead Serves as a Molecular Mark for Gene Silencing Memory
Authors: Raynal Noël J.-M. , Si Jiali , Taby Rodolphe F. , Gharibyan Vazganush , Ahmed Saira , Jelinek Jaroslav , Estécio Marcos R.H. , Issa Jean-Pierre J.
Published: April 2023

PDF file - 582K
Supplementary Figure 3 from DNA Methylation Does Not Stably Lock Gene Expression but Instead Serves as a Molecular Mark for Gene Silencing Memory
Authors: Raynal Noël J.-M. , Si Jiali , Taby Rodolphe F. , Gharibyan Vazganush , Ahmed Saira , Jelinek Jaroslav , Estécio Marcos R.H. , Issa Jean-Pierre J.
Published: April 2023

PDF file - 143K
Supplementary Figure Legend from Activation of Robo1 Signaling of Breast Cancer Cells by Slit2 from Stromal Fibroblast Restrains Tumorigenesis via Blocking PI3K/Akt/β-Catenin Pathway
Authors: Chang Po-Hao , Hwang-Verslues Wendy W. , Chang Yi-Cheng , Chen Chun-Chin , Hsiao Michael , Jeng Yung-Ming , Chang King-Jen , Lee Eva Y.-H.P. , Shew Jin-Yuh , Lee Wen-Hwa
Published: April 2023

PDF file, 90K.
Supplementary Figure 2 from DNA Methylation Does Not Stably Lock Gene Expression but Instead Serves as a Molecular Mark for Gene Silencing Memory
Authors: Raynal Noël J.-M. , Si Jiali , Taby Rodolphe F. , Gharibyan Vazganush , Ahmed Saira , Jelinek Jaroslav , Estécio Marcos R.H. , Issa Jean-Pierre J.
Published: April 2023

PDF file - 252K
Supplementary Figure 2 from Activation of Robo1 Signaling of Breast Cancer Cells by Slit2 from Stromal Fibroblast Restrains Tumorigenesis via Blocking PI3K/Akt/β-Catenin Pathway
Authors: Chang Po-Hao , Hwang-Verslues Wendy W. , Chang Yi-Cheng , Chen Chun-Chin , Hsiao Michael , Jeng Yung-Ming , Chang King-Jen , Lee Eva Y.-H.P. , Shew Jin-Yuh , Lee Wen-Hwa
Published: April 2023

PDF file, 44K, Robo2 knockdown did not promote the soft agar colony forming ability of MDA-MB-231 cells when co-cultured with fibroblasts.
Supplementary Video 1 from Unexpected Dissemination Patterns in Lymphoma Progression Revealed by Serial Imaging within a Murine Lymph Node
Authors: Ito Ken , Smith Bryan Ronain , Parashurama Natesh , Yoon Joon-Kee , Song Si Yeol , Miething Cornelius , Mallick Parag , Lowe Scott , Gambhir Sanjiv Sam
Published: April 2023

MOV file - 7.7MB, Procedure of implantation of LNIWC: A 6 week old C57BL/6 mouse was used for this LNIWC implantation
Supplementary Table 1 from Unexpected Dissemination Patterns in Lymphoma Progression Revealed by Serial Imaging within a Murine Lymph Node
Authors: Ito Ken , Smith Bryan Ronain , Parashurama Natesh , Yoon Joon-Kee , Song Si Yeol , Miething Cornelius , Mallick Parag , Lowe Scott , Gambhir Sanjiv Sam
Published: April 2023

PDF file - 69K, Comparison between the LNIWC technique and other common techniques
Supplementary Figures 1, 3 and 4 from Epigenetic Resensitization to Platinum in Ovarian Cancer
Authors: Matei Daniela , Fang Fang , Shen Changyu , Schilder Jeanne , Arnold Alesha , Zeng Yan , Berry William A. , Huang Tim , Nephew Kenneth P.
Published: April 2023

PDF file - 284K, Supplementary Figure 1: LINE-1 demethylation in PBMC (A and B) and tumor biopsies (C) separated by group (PFS>6months or < 6months). Supplementary Figure 2: Full Heat Map shows all 842 unique hypermethylated genes for PFS >6 months and 283 genes for PFS <6 months. Methylation levels are color coded from green, � value =0, to red, � value =1. Supplementary Figure 3: Demethylation induced by decitabine in biopsy samples. (A) A map of enriched functional clusters for genes demethylated by decitabine in biopsy samples based on DAVID functional annotation clustering. The size of the bars and the circles represent the enrichment score and the gene count, respectively. Detailed information regarding lists of gene members of each cluster is provided in Supplementary Table S2. (B) The pathways enriched by unique demethylated genes in the 2 groups. Supplementary Figure 4: HOXA11 methylation levels (A) HOXA11 DNA methylation levels in patient biopsies measured by pyrosequencing on days 1 and 8. Bars/error bars represent mean +/- SD. (B) Treatment induced hypomethylation of HOXA11 in tumor biopsies in patients with PFS >6 months vs. < 6 months (P <0.01). Bars/error bars represent mean +/- SD. (C) Baseline methylation levels of HOXA11 in tumors or ascites correlate with PFS.
Supplementary Figure 2 from Epigenetic Resensitization to Platinum in Ovarian Cancer
Authors: Matei Daniela , Fang Fang , Shen Changyu , Schilder Jeanne , Arnold Alesha , Zeng Yan , Berry William A. , Huang Tim , Nephew Kenneth P.
Published: April 2023

PDF file - 6.4MB, Full Heat Map shows all 842 unique hypermethylated genes for PFS >6 months and 283 genes for PFS < 6 months. Methylation levels are color coded from green, � value =0, to red, � value =1.
Supplementary Figure Legends 1-4 from Inhibiting Interactions of Lysine Demethylase LSD1 with Snail/Slug Blocks Cancer Cell Invasion
Authors: Ferrari-Amorotti Giovanna , Fragliasso Valentina , Esteki Roza , Prudente Zelia , Soliera Angela Rachele , Cattelani Sara , Manzotti Gloria , Grisendi Giulia , Dominici Massimo , Pieraccioli Marco , Raschellà Giuseppe , Chiodoni Claudia , Colombo Mario Paolo , Calabretta Bruno
Published: April 2023

PDF file - 76K
Supplementary Figure 3 from Inhibiting Interactions of Lysine Demethylase LSD1 with Snail/Slug Blocks Cancer Cell Invasion
Authors: Ferrari-Amorotti Giovanna , Fragliasso Valentina , Esteki Roza , Prudente Zelia , Soliera Angela Rachele , Cattelani Sara , Manzotti Gloria , Grisendi Giulia , Dominici Massimo , Pieraccioli Marco , Raschellà Giuseppe , Chiodoni Claudia , Colombo Mario Paolo , Calabretta Bruno
Published: April 2023

PDF file - 5MB, Effect of Slug silencing on invasion and EMT markers expression of HTLA230 cells
Supplementary Methods, Tables 2-3, Figures 1-6 from Molecular Signature of Smoking in Human Lung Tissues
Authors: Bossé Yohan , Postma Dirkje S. , Sin Don D. , Lamontagne Maxime , Couture Christian , Gaudreault Nathalie , Joubert Philippe , Wong Vivien , Elliott Mark , van den Berge Maarten , Brandsma Corry A. , Tribouley Catherine , Malkov Vladislav , Tsou Jeffrey A. , Opiteck Gregory J. , Hogg James C. , Sandford Andrew J. , Timens Wim , Paré Peter D. , Laviolette Michel
Published: April 2023

PDF file - 242K, Table S2. Clinical characteristics of patients in the first replication set (UBC). Table S3. Clinical characteristics of patients in the second replication set (Groningen). Figure S1. Volcano plots showing the impact of smoking, COPD, and lung cancer on gene expression in the lung. Figure S2. Comparison of gene expression recovery following smoking cessation between the discovery set (Laval) and UBC. Figure S3. Comparison of gene expression recovery following smoking cessation between the discovery set (Laval) and Groningen. Figure S4. Expression of SERPIND1 in lung parenchyma of smoker and never-smoker by immunochemistry. Figure S5. Enrichment plot for slowly reversible gene in UBC. Figure S6. Enrichment plot for slowly reversible gene in Groningen
Supplementary Figure 1 from Cisplatin Selects for Multidrug-Resistant CD133+ Cells in Lung Adenocarcinoma by Activating Notch Signaling
Authors: Liu Yu-Peng , Yang Chih-Jen , Huang Ming-Shyan , Yeh Chi-Tai , Wu Alexander T.H. , Lee Yu-Cheng , Lai Tsung-Ching , Lee Chien-Hsin , Hsiao Ya-Wen , Lu Jean , Shen Chia-Ning , Lu Pei-Jung , Hsiao Michael
Published: April 2023

PDF file - 2.1MB, Cell differentiation and migration of GFP+ cells isolated from H460 cell line
Supplementary Table 3 from Molecular Subsets of Mantle Cell Lymphoma Defined by the IGHV Mutational Status and SOX11 Expression Have Distinct Biologic and Clinical Features
Authors: Navarro Alba , Clot Guillem , Royo Cristina , Jares Pedro , Hadzidimitriou Anastasia , Agathangelidis Andreas , Bikos Vasilis , Darzentas Nikos , Papadaki Theodora , Salaverria Itziar , Pinyol Magda , Puig Xavier , Palomero Jara , Vegliante Maria Carmela , Amador Virgina , Martinez-Trillos Alejandra , Stefancikova Lenka , Wiestner Adrian , Wilson Wyndham , Pott Christiane , Calasanz Maria Jose , Trim Nicola , Erber Wendy , Sander Birgitta , Ott German , Rosenwald Andreas , Colomer Dolors , Giné Eva , Siebert Reiner , Lopez-Guillermo Armando , Stamatopoulos Kostas , Beà Sílvia , Campo Elías
Published: April 2023

PDF file - 108K, P-values of the 518 genes differentially expressed between M-MCL and U-MCL
Supplementary Figure 2 from Roles for Endothelin Receptor B and BCL2A1 in Spontaneous CNS Metastasis of Melanoma
Authors: Cruz-Muñoz William , Jaramillo Maria L. , Man Shan , Xu Ping , Banville Myriam , Collins Catherine , Nantel Andre , Francia Giulio , Morgan Sherif S. , Cranmer Lee D. , O'Connor-McCourt Maureen D. , Kerbel Robert S.
Published: April 2023

PDF file - 60K, Examination of gene alterations relevant to spontaneous melanoma brain metastases
Supplementary Figure 1 from Roles for Endothelin Receptor B and BCL2A1 in Spontaneous CNS Metastasis of Melanoma
Authors: Cruz-Muñoz William , Jaramillo Maria L. , Man Shan , Xu Ping , Banville Myriam , Collins Catherine , Nantel Andre , Francia Giulio , Morgan Sherif S. , Cranmer Lee D. , O'Connor-McCourt Maureen D. , Kerbel Robert S.
Published: April 2023

PDF file - 56K, Schematic representation of the protocol used for generating the highly 'visceral' metastatic variants
Supplementary Figure 1 from Molecular Subsets of Mantle Cell Lymphoma Defined by the IGHV Mutational Status and SOX11 Expression Have Distinct Biologic and Clinical Features
Authors: Navarro Alba , Clot Guillem , Royo Cristina , Jares Pedro , Hadzidimitriou Anastasia , Agathangelidis Andreas , Bikos Vasilis , Darzentas Nikos , Papadaki Theodora , Salaverria Itziar , Pinyol Magda , Puig Xavier , Palomero Jara , Vegliante Maria Carmela , Amador Virgina , Martinez-Trillos Alejandra , Stefancikova Lenka , Wiestner Adrian , Wilson Wyndham , Pott Christiane , Calasanz Maria Jose , Trim Nicola , Erber Wendy , Sander Birgitta , Ott German , Rosenwald Andreas , Colomer Dolors , Giné Eva , Siebert Reiner , Lopez-Guillermo Armando , Stamatopoulos Kostas , Beà Sílvia , Campo Elías
Published: April 2023

PDF file - 73K, SOX11 expression evaluated by three different techniques. One-hundred-sixty-one MCL patients were studied, 64 by immunohistochemistry (IHC), 143 by quantitative PCR (qPCR) and 50 by gene expression profiling (GEP). Several samples were evaluated with more than one technique, and 8 patients were assessed by all three methodologies. The results were concordant in all cases
Supplementary Figures 1-3 from PLZF Confers Effector Functions to Donor T Cells That Preserve Graft-versus-Tumor Effects while Attenuating GVHD
Authors: Ghosh Arnab , Holland Amanda M. , Dogan Yildirim , Yim Nury L. , Rao Uttam K. , Young Lauren F. , West Mallory L. , Singer Natalie V. , Lee Hae , Na Il-Kang , Tsai Jennifer J. , Jenq Robert R. , Penack Olaf , Hanash Alan M. , Lezcano Cecilia , Murphy George F. , Liu Chen , Sadelain Michel , Sauer Martin G. , Sant'Angelo Derek , van den Brink Marcel R.M.
Published: April 2023

Supplementary S1: PLZF expression affects CD4+ driven alloreactivity. Supplementary S2: PLZF-TG T cells undergo allo-activation that is similar to donor B6-WT T cells. Supplementary S3: Fewer deaths from GVHD are seen in BMT recipients of PLZF-TG T cells compared to the BMT recipients of B6-WT T cells.
Supplementary Table 2 from Detection of Redundant Fusion Transcripts as Biomarkers or Disease-Specific Therapeutic Targets in Breast Cancer
Authors: Asmann Yan W. , Necela Brian M. , Kalari Krishna R. , Hossain Asif , Baker Tiffany R. , Carr Jennifer M. , Davis Caroline , Getz Julie E. , Hostetter Galen , Li Xing , McLaughlin Sarah A. , Radisky Derek C. , Schroth Gary P. , Cunliffe Heather E. , Perez Edith A. , Thompson E. Aubrey
Published: April 2023

Supplementary Table 2 from Detection of Redundant Fusion Transcripts as Biomarkers or Disease-Specific Therapeutic Targets in Breast Cancer
Supplementary Materials and Methods and Legends from Galectin-3 Contributes to Melanoma Growth and Metastasis via Regulation of NFAT1 and Autotaxin
Authors: Braeuer Russell R. , Zigler Maya , Kamiya Takafumi , Dobroff Andrey S. , Huang Li , Choi Woonyoung , McConkey David J. , Shoshan Einav , Mobley Aaron K. , Song Renduo , Raz Avraham , Bar-Eli Menashe
Published: April 2023

PDF file, 84K
Supplementary Figure 1 from Detection of Redundant Fusion Transcripts as Biomarkers or Disease-Specific Therapeutic Targets in Breast Cancer
Authors: Asmann Yan W. , Necela Brian M. , Kalari Krishna R. , Hossain Asif , Baker Tiffany R. , Carr Jennifer M. , Davis Caroline , Getz Julie E. , Hostetter Galen , Li Xing , McLaughlin Sarah A. , Radisky Derek C. , Schroth Gary P. , Cunliffe Heather E. , Perez Edith A. , Thompson E. Aubrey
Published: April 2023

Supplementary Figure 1 from Detection of Redundant Fusion Transcripts as Biomarkers or Disease-Specific Therapeutic Targets in Breast Cancer
Supplementary Figure 5 from Galectin-3 Contributes to Melanoma Growth and Metastasis via Regulation of NFAT1 and Autotaxin
Authors: Braeuer Russell R. , Zigler Maya , Kamiya Takafumi , Dobroff Andrey S. , Huang Li , Choi Woonyoung , McConkey David J. , Shoshan Einav , Mobley Aaron K. , Song Renduo , Raz Avraham , Bar-Eli Menashe
Published: April 2023

PDF file, 1740K, Microvascular density in A375SM NT and Gal-3 shRNA tumors
Supplementary Figure 4 from Galectin-3 Contributes to Melanoma Growth and Metastasis via Regulation of NFAT1 and Autotaxin
Authors: Braeuer Russell R. , Zigler Maya , Kamiya Takafumi , Dobroff Andrey S. , Huang Li , Choi Woonyoung , McConkey David J. , Shoshan Einav , Mobley Aaron K. , Song Renduo , Raz Avraham , Bar-Eli Menashe
Published: April 2023

PDF file, 227K, Immunohistochemistry of A375SM tumors after silencing galectin-3
Supplementary Figure 2 from Galectin-3 Contributes to Melanoma Growth and Metastasis via Regulation of NFAT1 and Autotaxin
Authors: Braeuer Russell R. , Zigler Maya , Kamiya Takafumi , Dobroff Andrey S. , Huang Li , Choi Woonyoung , McConkey David J. , Shoshan Einav , Mobley Aaron K. , Song Renduo , Raz Avraham , Bar-Eli Menashe
Published: April 2023

PDF file, 1483K, Transcriptional analysis of autotaxin after silencing galectin-3 by nuclear run-on and dual luciferase assays
Supplementary Figure 1 from Galectin-3 Contributes to Melanoma Growth and Metastasis via Regulation of NFAT1 and Autotaxin
Authors: Braeuer Russell R. , Zigler Maya , Kamiya Takafumi , Dobroff Andrey S. , Huang Li , Choi Woonyoung , McConkey David J. , Shoshan Einav , Mobley Aaron K. , Song Renduo , Raz Avraham , Bar-Eli Menashe
Published: April 2023

PDF file, 1628K, Invasion, migration, and soft agar assay of melanoma cells after silencing galectin-3
Supplementary Materials and Methods from miR-124 Inhibits STAT3 Signaling to Enhance T Cell–Mediated Immune Clearance of Glioma
Authors: Wei Jun , Wang Fei , Kong Ling-Yuan , Xu Shuo , Doucette Tiffany , Ferguson Sherise D. , Yang Yuhui , McEnery Kayla , Jethwa Krishan , Gjyshi Olsi , Qiao Wei , Levine Nicholas B. , Lang Frederick F. , Rao Ganesh , Fuller Gregory N. , Calin George A. , Heimberger Amy B.
Published: April 2023

Supplementary Materials and Methods - PDF file 115K, Supplementary Materials and Methods
Supplementary Figure Legends from miR-124 Inhibits STAT3 Signaling to Enhance T Cell–Mediated Immune Clearance of Glioma
Authors: Wei Jun , Wang Fei , Kong Ling-Yuan , Xu Shuo , Doucette Tiffany , Ferguson Sherise D. , Yang Yuhui , McEnery Kayla , Jethwa Krishan , Gjyshi Olsi , Qiao Wei , Levine Nicholas B. , Lang Frederick F. , Rao Ganesh , Fuller Gregory N. , Calin George A. , Heimberger Amy B.
Published: April 2023

Supplementary Figure Legends - PDF file 70K, Supplementary Figure Legends
Supplementary Figure 4 from miR-124 Inhibits STAT3 Signaling to Enhance T Cell–Mediated Immune Clearance of Glioma
Authors: Wei Jun , Wang Fei , Kong Ling-Yuan , Xu Shuo , Doucette Tiffany , Ferguson Sherise D. , Yang Yuhui , McEnery Kayla , Jethwa Krishan , Gjyshi Olsi , Qiao Wei , Levine Nicholas B. , Lang Frederick F. , Rao Ganesh , Fuller Gregory N. , Calin George A. , Heimberger Amy B.
Published: April 2023

Supplementary Figure 4 - PDF file 84K, Ex vivo splenocytes from miR-124 treated intracranial GL261 mice have markedly increased cytotoxicity at 48 hour s after coculture with GL261 cells compared to splenocytes from scramble control oligonucleotide-treated GL261-bearing mice. The ratio of splenocytes to GL261 cells is 100:1. Representative dot plots of duel PI- and CFSE- labeled GL261 cells with splenocytes and the associated gating strategy are shown to demonstrate how the target cells (GL261) are identified and quantified
Supplementary Figures 1-5, Tables 1-5 from A Single-Nucleotide Substitution Mutator Phenotype Revealed by Exome Sequencing of Human Colon Adenomas
Authors: Nikolaev Sergey I. , Sotiriou Sotirios K. , Pateras Ioannis S. , Santoni Federico , Sougioultzis Stavros , Edgren Henrik , Almusa Henrikki , Robyr Daniel , Guipponi Michel , Saarela Janna , Gorgoulis Vassilis G. , Antonarakis Stylianos E. , Halazonetis Thanos D.
Published: April 2023

PDF file - 2600K, Supplementary Figure S1. Statistical analysis for calling single nucleotide substitutions (SNSs). Supplementary Figure S2. Example of LOH affecting the APC gene in a tubulovillous adenoma (TVA) with moderate dysplasia (polyp MS1). Supplementary Figure S3. LOH and copy number alterations (CNAs) for all polyps. The data are shown using circos plots. Supplementary Figure S4. Amplification of the MYC locus in an adenoma with severe dysplasia. Supplementary Figure S5. Calculation of mutation rates in normal colon tissue and adenomas. Supplementary Table S1. Clinical, histopathological and sequence coverage data for the examined polyps. Supplementary Table S2. Statistical analysis of cancer-driver genes. Supplementary Table S4. Coding lengths of 19,075 protein-coding genes distributed in 8 bins according to gene size. Supplementary Table S5. Genomic lengths of 19,075 protein-coding genes distributed in 8 bins according to gene size
Supplementary Figure 4 from PNUTS Functions as a Proto-Oncogene by Sequestering PTEN
Authors: Kavela Sridhar , Shinde Swapnil R. , Ratheesh Raman , Viswakalyan Kotapalli , Bashyam Murali D. , Gowrishankar Swarnalata , Vamsy Mohana , Pattnaik Sujit , Rao Subramanyeshwar , Sastry Regulagadda A. , Srinivasulu Mukta , Chen Junjie , Maddika Subbareddy
Published: April 2023

PDF file - 234K, Effect of PNUTS knock down on Akt signaling in MDA-MB-231 and BPH1 cells