bluuebunny/crossref_metadata_2025 huggingface dataset:
Evolution of YidC/Oxa1/Alb3 insertases: three independent gene duplications followed by functional specialization in bacteria, mitochondria and chloroplasts
Authors: Funes Soledad , Kauff Frank , van der Sluis Eli O. , Ott Martin , Herrmann Johannes M.
Published: January 2011

Members of the YidC/Oxa1/Alb3 protein family facilitate the insertion, folding and assembly of proteins of the inner membranes of bacteria and mitochondria and the thylakoid membrane of plastids. All homologs share a conserved hydrophobic core region comprising five transmembrane domains. On the basis of phylogenetic analyses, six subgroups of the family can be distinguished which presumably arose from three independent gene duplications followed by functional specialization. During evolution of bacteria, mitochondria and chloroplasts, subgroup-specific regions were added to the core domain to facilitate the association with ribosomes or other components contributing to the substrate spectrum of YidC/Oxa1/Alb3 proteins.
SLC22 transporter family proteins as targets for cytostatic uptake into tumor cells
Authors: Gupta Shivangi , Burckhardt Gerhard , Hagos Yohannes
Published: January 2011

The response to chemotherapy by tumor cells depends on the concentration of cytostatics accumulated inside the cells. The accumulation of anticancer drugs in tumor cells is mainly dependent on functional expression of efflux and influx transporters and to a minor extent on passive diffusion through the membrane. Efflux transporters of the ABC family are partially responsible for the chemoresistance of cancer cells by secreting these cytostatics. Over the past decades, the role of ABC transporters in the chemoresistance of various malignant tumors has been very well documented. By contrast, very little is known about the impact on tumor therapy of influx transporters belonging to the solute carrier transporters (SLC family). In this review, we focus on the interaction of SLC22 transporters with cytostatics, the expression of these transporters in tumor cells as well as their impact on the chemosensitivity of cancer cells.
Pumping lipids with P4-ATPases
Authors: López-Marqués Rosa L. , Holthuis Joost C.M. , Pomorski Thomas G.
Published: January 2011

While accumulating evidence indicates that P4-ATPases catalyze phospholipid transport across cellular bilayers, their kinship to cation-pumping ATPases has raised fundamental questions concerning the underlying flippase mechanism. Loss of P4-ATPase function perturbs vesicle formation in late secretory and endocytic compartments. An intriguing concept is that P4-ATPases help drive vesicle budding by generating imbalances in transbilayer lipid numbers. Moreover, activation of P4-ATPases by phosphoinositides and other effectors of coat recruitment provide a potential mechanism to confine flippase activity to sites of vesicle biogenesis. These developments have raised considerable interest in understanding the mechanism, regulation and biological implications of P4-ATPase-catalyzed phospholipid transport.
The ugly side of amphetamines: short- and long-term toxicity of 3,4-methylenedioxymethamphetamine (MDMA, ‘Ecstasy’), methamphetamine and d-amphetamine
Authors: Steinkellner Thomas , Freissmuth Michael , Sitte Harald H. , Montgomery Therese
Published: January 2011

Amphetamine (‘Speed’), methamphetamine (‘Ice’) and its congener 3,4-methylenedioxymethamphetamine (MDMA; ‘Ecstasy’) are illicit drugs abused worldwide for their euphoric and stimulant effects. Despite compelling evidence for chronic MDMA neurotoxicity in animal models, the physiological consequences of such toxicity in humans remain unclear. In addition, distinct differences in the metabolism and pharmacokinetics of MDMA between species and different strains of animals prevent the rationalisation of realistic human dose paradigms in animal studies. Here, we attempt to review amphetamine toxicity and in particular MDMA toxicity in the pathogenesis of exemplary human pathologies, independently of confounding environmental factors such as poly-drug use and drug purity.
Transporters, Trojan horses and therapeutics: suitability of bile acid and peptide transporters for drug delivery
Authors: Kramer Werner
Published: January 2011

Membrane transporters are major determinants for the pharmacokinetic, safety and efficacy behavior of drugs. Available technologies to study function and structure of transport proteins has strongly stimulated research in transporter biology and uncovered their importance for the drug discovery and development process, especially for drug absorption and disposition. Physiological transport systems are investigated as potential ferries to improve drug absorption and membrane permeation and to achieve organ-specific drug action. In particular, the bile acid transport systems in the liver and the small intestine and the oligopeptide transporters are of significant importance for molecular drug delivery.
Pathways of transport protein evolution: recent advances
Authors: Lam Vincent H. , Lee Jong-Hoon , Silverio Abe , Chan Henry , Gomolplitinant Kenny M. , Povolotsky Tatyana L. , Orlova Ekaterina , Sun Eric I. , Welliver Carl H. , Saier Milton H.
Published: January 2011

We herein report recent advances in our understanding of transport protein evolution. Numerous families of complex transmembrane transport proteins are believed to have arisen from short channel-forming amphipathic or hydrophobic peptides by various types of intragenic duplication events. Distinct pathways distinguish families, demonstrating independent origins for some, and allowing assignment of others to superfamilies. Some families have diversified in topology, whereas others have remained uniform. An example of ‘retroevolution’ was discovered where a more complex carrier gave rise to a structurally and functionally simpler channel. The results described in this review article expand our understanding of protein evolution.
Myeloperoxidase-catalyzed oxidative inactivation of human kininogens: the impairment of kinin-precursor and prekallikrein-binding functions
Authors: Kozik Andrzej , Golda Anna , Mak Pawel , Suder Piotr , Silberring Jerzy , Barbasz Anna , Rapala-Kozik Maria
Published: January 2011

Bradykinin-related vasoactive peptides (kinins) are important mediators of local and systemic inflammatory reactions. However, at local inflammatory foci, the production of kinins from proteinaceous precursors (kininogens) can be affected by reactive oxygen species released by phagocyte cells. One of the predominant oxidants at these places is hypochlorous acid which is formed from hydrogen peroxide and chloride ions by neutrophil myeloperoxidase. In this study, inactivation of human kininogens after oxidation with the myeloperoxidase-H2O2-chloride system was observed and analyzed by protein chemistry methods. The kinin release from oxidized kininogens by major kinin-producing enzymes, plasma and tissue kallikreins, proceed with a very low rate. This effect was assigned to apparent inability of kallikreins to process the kinin N-terminus owing to the conversion of the adjacent Met-361 residue to methionine sulfoxide. Additionally, the oxidized high-molecular mass kininogen lost its natural ability to bind plasma prekallikrein. This effect was assigned to the oxidation of Trp-569 residue within the prekallikrein-binding region which is subsequently destructed owing to cleavage of the peptide bond after that residue. One possible pathophysiological consequence of the described effects on kininogens could be the impairment of the normal assembly and triggering of the kinin-forming system on defense cell surfaces.
Identification and characterisation of novel Mss4-binding Rab GTPases
Authors: Wixler Viktor , Wixler Ludmilla , Altenfeld Anika , Ludwig Stephan , Goody Roger S. , Itzen Aymelt
Published: January 2011

The Mss4 (mammalian suppressor of yeast Sec4) is an evolutionarily highly conserved protein and is expressed in all mammalian tissues. Although its precise biological function is still elusive, it has been shown to associate with a subset of secretory Rab proteins (Rab1b, Rab3a, Rab8a, Rab10) and to possess a rather low guanine nucleotide exchange factor (GEF) activity towards them in vitro (Rab1, Rab3a and Rab8a). By screening a human placenta cDNA library with Mss4 as bait, we identified several Rab GTPases (Rab12, Rab13 and Rab18) as novel Mss4-binding Rab proteins. Only exocytic but no endocytic Rab GTPases were found in our search. The binding of Mss4 to Rab proteins was confirmed by direct yeast two-hybrid interaction, by co-immunoprecipitation from lysates of mammalian cells, by immunofluorescence colocalisation as well as by direct in vitro binding studies. Analysis of Mss4 catalytic activity towards different Rab substrates confirmed that it is a somewhat inefficient GEF. These data, together with our mutational analysis of Mss4-Rab binding capacity, support the already proposed idea that Mss4 functions rather as a chaperone for exocytic Rab GTPases than as a GEF.
Antiangiogenic kringles derived from human plasminogen and apolipoprotein(a) inhibit fibrinolysis through a mechanism that requires a functional lysine-binding site
Authors: Ahn Jin-Hyung , Lee Ho-Jeong , Lee Eun-Kyoung , Yu Hyun-Kyung , Lee Tae-Ho , Yoon Yeup , Kim Sun-Jin , Kim Jang-Seong
Published: January 2011

Many proteins in the fibrinolysis pathway contain antiangiogenic kringle domains. Owing to the high degree of homology between kringle domains, there has been a safety concern that antiangiogenic kringles could interact with common kringle proteins during fibrinolysis leading to adverse effectsin vivo. To address this issue, we investigated the effects of several antiangiogenic kringle proteins including angiostatin, apolipoprotein(a) kringles IV9-IV10-V (LK68), apolipoprotein(a) kringle V (rhLK8) and a derivative of rhLK8 mutated to produce a functional lysine-binding site (Lys-rhLK8) on the entire fibrinolytic processin vitroand analyzed the role of lysine binding. Angiostatin, LK68 and Lys-rhLK8 increased clot lysis time in a dose-dependent manner, inhibited tissue-type plasminogen activator-mediated plasminogen activation on a thrombin-modified fibrinogen (TMF) surface, showed binding to TMF and significantly decreased the amount of plasminogen bound to TMF. The inhibition of fibrinolysis by these proteins appears to be dependent on their functional lysine-binding sites. However, rhLK8 had no effect on these processes owing to an inability to bind lysine. Collectively, these results indicate that antiangiogenic kringles without lysine binding sites might be safer with respect to physiological fibrinolysis than lysine-binding antiangiogenic kringles. However, the clinical signi-ficance of these findings will require further validationin vivo.
PETIR-001, a dual inhibitor of dipeptidyl peptidase IV (DP IV) and aminopeptidase N (APN), ameliorates experimental autoimmune encephalomyelitis in SJL/J mice
Authors: Reinhold Dirk , Bank Ute , Entz Dominik , Goihl Alexander , Stoye Diana , Wrenger Sabine , Brocke Stefan , Thielitz Anja , Stefin Sofia , Nordhoff Karsten , Heimburg Anke , Täger Michael , Ansorge Siegfried
Published: January 2011

Cellular dipeptidyl peptidase IV (DP IV, CD26) and amino-peptidase N (APN, CD13) play regulatory roles in T cell activation and represent potential targets for treatment of inflammatory disorders. We have developed a novel therapeutic strategy, ‘peptidase-targeted Immunoregulation’ (PETIR™), which simultaneously targets both cellular DP IV and APN via selective binding sites different from the active sites with a single inhibitor. To prove the therapeutic concept of PETIR™ in autoimmunity of the central nervous system (CNS), we evaluated the effect of a single substance, PETIR-001, in an animal model of multiple sclerosis, experimental autoimmune encephalomyelitis (EAE) in SJL/J mice. Administration of PETIR-001 significantly delayed and decreased clinical signs of active EAE, when given in a therapeutic manner intraperitoneally from day 15 to day 24 after induction of EAE. Both the acute phase and the first relapse of EAE were markedly inhibited. Importantly, a similar therapeutic benefit was obtained after oral administration of PETIR-001 from day 12 to day 21 after disease induction. Our results demonstrate that PETIR-001 exhibits a therapeutic effect on EAE in SJL/J mice. Thus, PETIR™ represents a novel and efficient therapeutic approach for immunotherapy of CNS inflammation.
Outside or inside: role of the subcellular localization of DP4-like enzymes for substrate conversion and inhibitor effects
Authors: Bank Ute , Heimburg Anke , Wohlfarth Astrid , Koch Gudrun , Nordhoff Karsten , Julius Heiko , Helmuth Martin , Breyer Doreen , Reinhold Dirk , Täger Michael , Ansorge Siegfried
Published: January 2011

The discovery of the DP4-related enzymes DP8 and DP9 raised controversial discussion regarding the physiological and pathophysiological function of distinct members of the DP4 family. Particularly with regard to their potential relevance in regulating immune functions, it is of interest to know which role the subcellular distribution of the enzymes play. Synthetic substrates as well as low molecular weight inhibitors are widely used as tools, but little is yet known regarding their features in cell experiments, such as their plasma membrane penetration capacity. The fluorogenic substrates Gly-Pro-AMC or (Ala-Pro)2-R110 predominantly detect plasma membrane-bound activities of viable cells (less than 0.1% of fluorochromes R110 or AMC inside viable cells after 1 h incubation). Additionally, the selective and non-selective DP8/9 inhibitors allo-Ile-isoindoline and Lys[Z(NO2)]-pyrrolidide were found to be incapable of passing the plasma membrane easily. This suggests that previously reported cellular effects are not due to inhibition of the cytosolic enzymes DP8 or DP9. Moreover, our enzymatic studies with viable cells provided evidence that DP8 and/or DP9 are also present on the surface of immune cells under certain circumstances and could gain relevance particularly in the absence of DP4 expression. In summary, in cells which do express DP4 on the surface, this archetypical member of the DP4 family is the most relevant peptidase in the regulation of cellular functions.
Revisiting the tubulin folding pathway: new roles in centrosomes and cilia
Authors: Gonçalves João , Tavares Alexandra , Carvalhal Sara , Soares Helena
Published: January 2011

Centrosomes and cilia are critical eukaryotic organelles which have been in the spotlight in recent years given their implication in a myriad of cellular and developmental processes. Despite their recognized importance and intense study, there are still many open questions about their biogenesis and function. In the present article, we review the existing data concerning members of the tubulin folding pathway and related proteins, which have been identified at centrosomes and cilia and were shown to have unexpected roles in these structures.
Effect of periodate on lignin for wood adhesive application
Authors: Gosselink Richard J.A. , van Dam Jan E.G. , de Jong Ed , Gellerstedt Göran , Scott Elinor L. , Sanders Johan P.M.
Published: January 2011

Development of eco-friendly binders with no harmful emission during its complete life cycle is of high interest for the wood-based industry. In this paper, a fully renewable binder based on activated lignin and poly-furfuryl alcohol and a partly renewable lignin based phenol-formaldehyde (PF) binder were evaluated. Activation of kraft and soda lignins, isolated respectively from softwood and non-woods, by periodate oxidation was performed to improve lignin reactivity and application in wood adhesives. Periodate oxidation of lignin leads to higher lignin acidity, formation of quinonoid groups under more severe conditions, higher molar mass and higher reactivity towards the curing of furfuryl alcohol within a temperature range currently used in industry. Comparison of a 100% furan-based glue with a furan-based glue substituted by 10% lignin yields comparable product properties. However, periodate-activated lignin leads to lower wood failure, which might be caused by incompletely solubilised lignin particles in the acidic formulation disturbing crosslinking of the furan resin. Unmodified softwood kraft lignin performs well in a PF resin formulation at substitution levels up to 30% (w/w). Periodate oxidation of soda lignins enhances the glue performance because higher wood failure is attained. The higher molar mass after periodate treatment could be an important parameter for development of a stronger wood binder.
Unbiased Relatedness Estimation in Structured Populations
Authors: Wang Jinliang
Published: January 2011

Knowledge of the genetic relatedness between individuals is important in many research areas in quantitative genetics, conservation genetics, forensics, evolution, and ecology. In the absence of pedigree records, relatedness can be estimated from genetic marker data using a number of estimators. These estimators, however, make the critical assumption of a large random mating population without genetic structures. The assumption is frequently violated in the real world where geographic/social structures or nonrandom mating usually lead to genetic structures. In this study, I investigated two approaches to the estimation of relatedness between a pair of individuals from a subpopulation due to recent common ancestors (i.e., relatedness is defined and measured with the current focal subpopulation as reference). The indirect approach uses the allele frequencies of the entire population with and without accounting for the population structure, and the direct approach uses the allele frequencies of the current focal subpopulation. I found by simulations that currently widely applied relatedness estimators are upwardly biased under the indirect approach, but can be modified to become unbiased and more accurate by using Wright's Fst to account for population structures. However, the modified unbiased estimators under the indirect approach are clearly inferior to the unmodified original estimators under the direct approach, even when small samples are used in estimating both allele frequencies and relatedness.
High-Confidence Discovery of Genetic Network Regulators in Expression Quantitative Trait Loci Data
Authors: Duarte Christine W , Zeng Zhao-Bang
Published: January 2011

Expression QTL (eQTL) studies involve the collection of microarray gene expression data and genetic marker data from segregating individuals in a population to search for genetic determinants of differential gene expression. Previous studies have found large numbers of trans-regulated genes (regulated by unlinked genetic loci) that link to a single locus or eQTL “hotspot,” and it would be desirable to find the mechanism of coregulation for these gene groups. However, many difficulties exist with current network reconstruction algorithms such as low power and high computational cost. A common observation for biological networks is that they have a scale-free or power-law architecture. In such an architecture, highly influential nodes exist that have many connections to other nodes. If we assume that this type of architecture applies to genetic networks, then we can simplify the problem of genetic network reconstruction by focusing on discovery of the key regulatory genes at the top of the network. We introduce the concept of “shielding” in which a specific gene expression variable (the shielder) renders a set of other gene expression variables (the shielded genes) independent of the eQTL. We iteratively build networks from the eQTL to the shielder down using tests of conditional independence. We have proposed a novel test for controlling the shielder false-positive rate at a predetermined level by requiring a threshold number of shielded genes per shielder. Using simulation, we have demonstrated that we can control the shielder false-positive rate as well as obtain high shielder and edge specificity. In addition, we have shown our method to be robust to violation of the latent variable assumption, an important feature in the practical application of our method. We have applied our method to a yeast expression QTL data set in which microarray and marker data were collected from the progeny of a backcross of two species of Saccharomyces cerevisiae (Bremet al. 2002). Seven genetic networks have been discovered, and bioinformatic analysis of the discovered regulators and corresponding regulated genes has generated plausible hypotheses for mechanisms of regulation that can be tested in future experiments.
A Hierarchical Bayesian Model for Next-Generation Population Genomics
Authors: Gompert Zachariah , Buerkle C Alex
Published: January 2011

The demography of populations and natural selection shape genetic variation across the genome and understanding the genomic consequences of these evolutionary processes is a fundamental aim of population genetics. We have developed a hierarchical Bayesian model to quantify genome-wide population structure and identify candidate genetic regions affected by selection. This model improves on existing methods by accounting for stochastic sampling of sequences inherent in next-generation sequencing (with pooled or indexed individual samples) and by incorporating genetic distances among haplotypes in measures of genetic differentiation. Using simulations we demonstrate that this model has a low false-positive rate for classifying neutral genetic regions as selected genes (i.e., ϕST outliers), but can detect recent selective sweeps, particularly when genetic regions in multiple populations are affected by selection. Nonetheless, selection affecting just a single population was difficult to detect and resulted in a high false-negative rate under certain conditions. We applied the Bayesian model to two large sets of human population genetic data. We found evidence of widespread positive and balancing selection among worldwide human populations, including many genetic regions previously thought to be under selection. Additionally, we identified novel candidate genes for selection, several of which have been linked to human diseases. This model will facilitate the population genetic analysis of a wide range of organisms on the basis of next-generation sequence data.
Hormonal Contraception and Thrombotic Risk: A Multidisciplinary Approach
Authors: Trenor Cameron C. , Chung Richard J. , Michelson Alan D. , Neufeld Ellis J. , Gordon Catherine M. , Laufer Marc R. , Emans S. Jean
Published: January 2011

Heightened publicity about hormonal contraception and thrombosis risk and the publication of new guidelines by the World Health Organization in 2009 and the Centers for Disease Control and Prevention in 2010 addressing this complex issue have led to multidisciplinary discussions on the special issues of adolescents cared for at our pediatric hospital. In this review of the literature and new guidelines, we have outlined our approach to the complex patients referred to our center. The relative risk of thrombosis on combined oral contraception is three- to fivefold, whereas the absolute risk for a healthy adolescent on this therapy is only 0.05% per year. This thrombotic risk is affected by estrogen dose, type of progestin, mechanism of delivery, and length of therapy. Oral progestin-only contraceptives and transdermal estradiol used for hormone replacement carry minimal or no thrombotic risk. Transdermal, vaginal, or intrauterine contraceptives and injectable progestins need further study. A personal history of thrombosis, persistent or inherited thrombophilia, and numerous lifestyle choices also influence thrombotic risk. In this summary of one hospital's approach to hormone therapies and thrombosis risk, we review relative-risk data and discuss the application of absolute risk to individual patient counseling. We outline our approach to challenging patients with a history of thrombosis, known thrombophilia, current anticoagulation, or family history of thrombosis or thrombophilia. Our multidisciplinary group has found that knowledge of the guidelines and individualized management plans have been particularly useful for informing discussions about hormonal and nonhormonal options across varied indications.
Fish-Oil Fat Emulsion Supplementation May Reduce the Risk of Severe Retinopathy in VLBW Infants
Authors: Pawlik Dorota , Lauterbach Ryszard , Turyk Ewa
Published: January 2011

OBJECTIVE:

The retina contains rods and cones that have membranes highly enriched with docosahexaenoic acid (DHA). Infants born prematurely are at risk of DHA insufficiency, because they may not have benefited from a full third trimester of the mother's lipid stores. Moreover, within the first 2 to 3 weeks of life, the main sources of lipids for premature infants are fat emulsions, which do not contain DHA.

PATIENTS AND METHODS:

This observational study was designed to compare the safety and efficacy outcomes of an intravenous fat emulsion that consists of fish-oil emulsion (contains DHA) with soybean and olive oil, administered from the first day of life to 40 infants who weighed <1250 g; results were obtained from a historical cohort of 44 preterm neonates who were given an emulsion of soybean and olive oil. The primary study outcomes were the occurrence of retinopathy and need for laser therapy and cholestasis. Infants in the 2 groups were comparable with regard to demographic and clinical characteristics and were subjected to the same conventional therapy.

RESULTS:

There was a significantly lower risk of laser therapy for infants who received an emulsion of soybean, olive oil, and fish oil (P = .023). No significant differences were found in acuity and latency of visual evoked potentials between infants in the 2 groups. There was no infant with cholestasis among those who received fish-oil emulsion, and there were 5 subjects with cholestasis in the historical group (P = .056).

CONCLUSION:

Fish-oil–based fat emulsion administered from the first day of life may be effective in the prophylaxis of severe retinopathy.
Drinking water quality and protection of resources
Authors: Fettig J.
Published: January 2011

The structure of public water supply in Germany and the water resources used are briefly described. An overview over the legal requirements for drinking water is given, and the sources for contaminants are outlined. Then the multiple-barrier approach is discussed with respect to the resources groundwater and spring water, lake and reservoir water, and river water. Examples for treatment schemes are given and the principle of subsurface transport of river water as a first treatment step is described.
Capital social em um consórcio de pesquisa
Authors: Araújo Uajara Pessoa , Antonialli Luiz Marcelo , Brito Mozar J. de , Guerrini Fábio Müller
Published: January 2011

Capital social é discutido no âmbito do Consórcio Brasileiro de Pesquisa e Desenvolvimento de Café. O objetivo é investigar a viabilidade de utilizar o capital social como instrumento para explicar o gradiente de recursos do consórcio de que os pesquisadores conseguem se apropriar para seus projetos de pesquisa. Foi desenvolvida e aplicada uma métrica de capital social para testar a existência de correlação entre volume de recursos captado e volume de capital social. A análise sociométrica de escolhas preferenciais dos pesquisadores e a quantificação da participação desses cientistas em projetos do consórcio permitiram o cômputo de uma grandeza - capital social - que poderia vir a explicar metade da variação da verba obtida pelos cientistas responsáveis por projetos de pesquisa na rede.
Envenomation by Micrurus coral snakes in the Brazilian Amazon region: report of two cases
Authors: Pardal Pedro Pereira de Oliveira , Pardal Joseana Silva de Oliveira , Gadelha Maria Apolônia da Costa , Rodrigues Líliam da Silva , Feitosa Darlan Tavares , Prudente Ana Lúcia da Costa , Fan Hui Wen
Published: January 2011

Two cases of proven coral snake bites were reported in Belém, Pará State, Brazil. The first case was a severe one caused by Micrurus surinamensis. The patient required mechanical ventilation due to acute respiratory failure. The second case showed just mild signs of envenomation caused by Micrurus filiformis. Both patients received specific Micrurus antivenom and were discharged without further complications. Coral snake bites are scarcely reported in the Amazon region and there is a broad spectrum of clinical manifestations, varying from extremely mild to those which may rapidly lead to death if the patient is not treated as soon as possible.
Comparações florísticas e estruturais entre comunidades de palmeiras em fragmentos de floresta primária e secundária da Área de Proteção Ambiental Raimundo Irineu Serra - Rio Branco, Acre, Brasil
Authors: Carvalho Anelena Lima de , Ferreira Evandro José Linhares , Lima Joanna Marie Tucker
Published: January 2011

O presente estudo compara a composição e estrutura das comunidades de palmeiras da Área de Proteção Ambiental Raimundo Irineu Serra - APARIS, localizada no perímetro urbano do Município de Rio Branco-Acre. Foram selecionadas três áreas de floresta secundária em estágios sucessionais distintos: 7,5 anos, 27,5 anos, 37,5 anos de idade, e um fragmento de floresta primária. Em cada área foram instaladas cinco parcelas de 20 X 20m, onde foram analisadas a composição florística, estrutura horizontal e estrutura populacional das palmeiras. Foram identificados 1.034 indivíduos, incluídos em 12 gêneros e 19 espécies de palmeiras. A área de floresta primária apresentou maior diversidade. Na análise da estrutura populacional de cada área, comprovamos a existência de uma escassez de plântulas (≤ 50 cm de altura) e adultos reprodutivos. A fragmentação alterou a composição e diminuiu a riqueza e a diversidade de palmeiras na área da APARIS, enquanto, está favorecendo a dominância de certas espécies como A. phalerata.
Método QFD como Ferramenta para Desenvolvimento Conceitual de Produtos de Madeiras da Amazônia
Authors: Lucas Filho Fernando Cardoso , Pio Nabor da Silveira , Ferreira Daniel Rodrigues
Published: January 2011

O setor moveleiro caracteriza-se como um segmento que oferta produtos de diferentes formas e matérias-primas e estes produtos precisam ter diferenciais para se destacar e atrair o interesse do consumidor. Em Manaus, o comércio de moveis encontra-se num estágio considerado em evolução, podendo notar nos produtos ofertados, a total ausência de características que despertem o interesse de compra nos consumidores. Seguindo este contexto, este artigo tem como objetivo apresentar preferências em termos de produtos de madeiras da Amazônia dos consumidores de três classes econômicas - A1, B2 e C residentes na cidade de Manaus e a aplicação da primeira matriz (casa da qualidade) do método QFD para definição dos conceitos dos produtos identificados como preferidos pelas classes econômicas analisadas. Os resultados revelaram que há pouca variação nas preferências por tipos de produtos por classe econômica, propondo-se conceitualmente que os produtos incorporem os atributos tidos como preferidos por cada uma das classes econômicas analisada. Conclusões importantes: bom acabamento; design - estilo contemporâneo; preferência por madeira maciça e não por painéis (MDF).
Chemical constituents from the stem of Brosimum potabile (Moraceae)
Authors: Abreu Viviane Gomes da Costa , Silva Marilda Conceição da , Magalhães Rozângela Manfrini , Piló-Veloso Dorila , Xavier Izelene Felício da Silva , Oliveira Patrícia Machado , Alcântra Antônio Flávio de Carvalho
Published: January 2011

Three coumarins, 5-methoxypsoralene, xanthyletin, and (-)-marmesin, have been isolated from the ethanolic extract of the stem of the Amazonian plant Brosimum potabile. The structures were determined on the basis of NMR analyses and by comparison with spectroscopic data in the literature. The analysis of the hexane fractions by GC-MS in EIMS mode suggested the presence of (1-methylpentyl)-benzene; α,α-dimethyl-4-(1-methylethyl)-benzenemethanol; 1-methyl-3,5-bis(1-methylethyl)-benzene; urs-12-ene; chola-5,22-dien-3β-ol; cholesta-4,6-dien-3β-ol; sitosteryl 9(Z)-octadecenoate; cholesta-5,22-dien-3β-ol; cholesta-4,6,22-trien-3-one; and cholesta-4,22-dien-3-one. NMR data of other hexane fractions indicated the presence of 3β-acetoxy-lup-12,20(29)-diene; 3β-acetoxy-olean-12-ene; 3β-acetoxy-urs-12-ene; and adian-5-ene. All these compounds are first described in B. potabile.
Variabilidade genética da raça Brahman no Brasil detectada por meio de análise de pedigree
Authors: Faria Lydio Cosac de , Queiroz Sandra Aidar de , Vozzi Pedro Alejandro , Lôbo Raysildo Barbosa , Magnabosco Cláudio de Ulhôa , Oliveira João Ademir de
Published: January 2011

O objetivo deste trabalho foi analisar a variabilidade genética da raça Brahman no Brasil, por meio da análise de 15.851 pedigrees. O arquivo de dados foi dividido em dois períodos: 1998-2001 e 2002-2005. A variabilidade genética foi avaliada por parâmetros baseados na probabilidade de origem do gene: número efetivo de ancestrais, número efetivo de fundadores, número efetivo de genomas remanescentes e coeficientes de parentesco e de endogamia. Os valores encontrados quanto ao número de fundadores mostraram que a população está em expansão, embora o número efetivo de fundadores tenha diminuído de um período para outro. Os resultados foram diferentes em relação ao número de ancestrais e genomas remanescentes, que apresentaram crescimento de 23% nos períodos avaliados. O coeficiente de endogamia diminuiu nos períodos estudados, porém o coeficiente de parentesco "inter se" cresceu. Poucos ancestrais apresentaram grande contribuição genética para a população, o que evidencia a utilização de poucos indivíduos na reprodução. A raça Brahman, no Brasil, encontra-se em expansão, caracterizada pela diminuição do coeficiente de endogamia e aumento nos números efetivos de fundadores e de genótipos remanescentes. Entretanto, a variabilidade genética da raça mostra aumento do parentesco "inter se" e grande concentração do patrimônio genético de poucos indivíduos na população.
Utilización de compost agotado de champiñón como capa de coberturas en nuevos ciclos de producción
Authors: Pardo-Giménez Arturo , Zied Diego Cunha , Pardo-González José Emilio
Published: January 2011

El objetivo de este trabajo fue evaluar el comportamiento agronómico de seis mezclas de cobertura, elaboradas a partir de sustrato postcultivo del champiñón Agaricus bisporus, en nuevos ciclos de cultivo. Los resultados obtenidos mostraron la viabilidad de la reintroducción del sustrato en nuevos ciclos de cultivo, ya sea como material de base único, si se somete a un proceso de lavado para eliminar sales solubles, o bien mezclado con otros materiales de baja conductividad, como es el caso de la turba rubia o la fibra de coco. Se destacan los altos valores de eficiencia biológica registrados, que llegaron hasta los 100 kg kg-1 de compost, similares a los proporcionados por los testigos, y los altos valores relativos observados (con respecto a los testigos) en el contenido en materia seca de los carpóforos cosechados con algunas de las nuevas coberturas elaboradas. Esta reutilización del compost constituye una alternativa interesante, con vistas a reemplazar a las tierras y a los sustratos orgánicos utilizados habitualmente como cobertura, con la doble ventaja de disminuir los costos de elaboración y el impacto ambiental.
Characterization of rambutan (Nephelium lappaceum) fruits from outstanding mexican selections
Authors: Arenas Marian Guadalupe Hernández , Angel Daniel Nieto , Damian María Teresa Martínez , Ortiz Daniel Teliz , Díaz Cristian Nava , Martinez Nestor Bautista
Published: January 2011

Fruits of five regional selections of rambutan (Nephelium lappaceum L.) were characterized to identify those with international marketing quality to promote their propagation in Mexico, improvement and conservation in germoplasm bank. The fruits were harvested in June, July, and August 2008 and, after each harvest, were assessed for shape (length/diameter), firmness, fruit weight, number of fruits per kilogram, weight and percentage of pericarp, seed and aril, total soluble solids, total sugars, vitamin C content, pH, and titratable acidity. In addition, a sensorial evaluation was carried out with 31 panelists who graded each selection for color, sweetness, and acidity. Fruits of five selections were ovoid, and with the following characteristics: firmness values from 43.7 to 51.0 N, fruit weight ranged from 22.4 to 34.7 g, registering from 28.9 to 45.0 fruits per kg; pericarp weight from 10.5 to 17.3 g (45.9 to 49.9% of the total fruit weight); total seed weight from 2.2 to 2.5 g (7.0 to 10.0%); average arils weight from 8.9 to 13.1 g (37.5 to 41.4%). The fruits had high contents of total soluble solids (17.8 to 20.4 ºBrix), total sugars (211.95 to 242.70 mg/100g in the edible portion), vitamin C (37.9 to 69.1 mg/100 g), pH 5.0, and titratable acidity of 0.20 to 0.28%. The fruits from the RT-01 and RT-05 selections had better attributes in fruit weight, total soluble solids and titratable acidity and were better accepted by the panelists. Harvest date significantly affects rambutan fruit quality; at the middle and end of the season harvested fruits had better qualitative characteristics for the marketing.
Infiltração de água no solo em áreas cultivadas com cana-de-açúcar sob diferentes sistemas de colheita e modelos de ajustes de equações de infiltração
Authors: Tomasini Bruno A. , Vitorino Antonio C. T. , Garbiate Marcos V. , Souza Cristiano M. A. de , A. Sobrinho Teodorico
Published: January 2011

As técnicas de colheita da cultura de cana nem sempre seguem preceitos conservacionistas, fato que pode influenciar atributos físicos do solo com consequente alteração da velocidade de infiltração de água no solo. O trabalho realizado teve como objetivo avaliar o efeito de diferentes sistemas de colheita (manual e mecanizada) da cana-de-açúcar (crua e queimada), sobre as características de infiltração e verificar a adequação de modelos matemáticos para a estimativa da taxa de infiltração de água no solo. Foi utilizado um simulador de chuva portátil calibrado para aplicar uma precipitação de 60 mm h-1. Os testes de infiltração de água no solo foram realizados em três sistemas de colheita: colheita manual de cana queimada, colheita mecanizada de cana crua e colheita mecanizada de cana queimada. A qualidade do ajuste dos modelos foi avaliada por meio de regressões não lineares entre os valores estimados e os valores médios observados em cada tratamento estudado. Nos tratamentos onde foi empregada a colheita mecânica, observou-se uma redução da taxa de infiltração final em relação à área sob colheita manual de cana queimada. A equação de Horton foi a mais adequada para a estimativa da taxa de infiltração de água no solo estudado.
Agricultural engineering at UNICAMP: undergraduate student dropout analysis
Authors: Testezlaf Roberto
Published: January 2011

Nowadays, dropping out in B.Sc. courses practically occurs in all Universities of the contemporary world. Undergraduate student withdraw could means several losses as, to the student, not to graduate, to the teacher, for not accomplishing his goal as educator, to the university, for not attending its mission, to the society, economic and social losses and also to the family for unfulfilling the dreams. The objective of this research is to present a quantitative study on the dropping out rate in the Agricultural Engineering B.Sc. program (BSAGENG) at State University of Campinas (UNICAMP), seeking to contribute to the understanding of this issue. It has been determined the dropping out rate from 1995 to 2006 based on the university official data, by employing four different methods of calculation. Three of the methods revealed that dropping out rate is very close to the graduation index, i.e., close to 50%. Regardless of the adopted method for the dropping rate estimation and the statistics demonstrating that the agricultural engineering undergraduate course at UNICAMP figures falls within similar courses normality in Brazil, it should be recognized that a public institution of education should be concerned in presenting such figures. A detailed and deep analysis must be outlined in further studies seeking for specific actions aiming to reduce dropping out process.
Aspectos clínico-patológicos e controle da paratuberculose em rebanho bovino leiteiro
Authors: Yamasaki Elise M , Tokarnia Carlos H , Galvão Alexandre , Gomes Marcos J.P , Chies José A.B , Veit Tiago Degani , Aragão Ana Paula , Brito Marilene F
Published: January 2011

A paratuberculose ou doença de Johne é uma enterite granulomatosa causada por Mycobacterium avium subsp. paratuberculosis. Descrevem-se os aspectos epidemiológicos, clínico-patológicos e laboratoriais da paratuberculose em rebanho bovino leiteiro no município de Rio Claro, região Sul do Estado do Rio de Janeiro. No período de 2006 a 2009, oito vacas adultas da raça Girolanda apresentaram diarreia crônico-intermitente e perda progressiva de peso. À necropsia, observaram-se linfonodos mesentéricos aumentados de volume e úmidos ao corte, vasos linfáticos subserosos das alças intestinais proeminentes, serosa do intestino com aspecto anelado e cerebroide e a mucosa espessada, pregueada e com aspecto microgranular. À microscopia havia, desde o duodeno até o reto, inflamação granulomatosa difusa, marcada dilatação dos vasos linfáticos no ápice das vilosidades, linfangiectasia e linfangite granulomatosa na submucosa, muscular e serosa. A inflamação granulomatosa também foi vista nos linfonodos mesentéricos. A coloração de Ziehl-Neelsen revelou variável quantidade de bacilos álcool-ácido resistentes no interior de macrófagos, de células gigantes de Langhans e livres na mucosa e submucosa dos intestinos delgado e grosso e em linfonodos mesentéricos. Em alguns animais, a lâmina própria da mucosa, principalmente do jejuno e íleo exibia acentuada hipertrofia. Mycobacterium avium subsp. paratuberculosis foi isolado em cultivo bacteriano de Herrold com micobactina, a partir de amostras de fezes, de raspado de mucosa intestinal e de leite e identificado pela técnica de PCR IS900. Através da avaliação sorológica semestral, foram analisadas 298 vacas do mesmo rebanho a partir de três anos de idade, observou-se cerca de 40% de animais reagentes ao teste ELISA indireto no período estudado. O diagnóstico da paratuberculose foi baseado nos dados clínico-patológicos, na sorologia, no isolamento e identificação do agente através de cultivo bacteriano e PCR IS900. Após implementação de medidas de controle, tais como eliminação de animais doentes, abate seletivo dos animais soropositivos, separação dos bezerros ao nascer e utilização de banco de colostro, observou-se, nos três anos de estudo, diminuição da ocorrência de casos clínicos no rebanho, de seis casos por ano para cerca de um caso por ano.
Surtos por Stomoxys calcitrans em gado de corte no Mato Grosso do Sul
Authors: Barros Antonio Thadeu M , Koller Wilson W , Catto João B , Soares Cleber O
Published: January 2011

A expansão da indústria sucroalcooleira tem levado à instalação de usinas de álcool em áreas tradicionalmente ocupadas pela pecuária de corte na região Centro-Oeste do País. Surtos pela mosca-dos-estábulos (Stomoxys calcitrans) em bovinos Nelore têm sido relatados nos últimos dois anos em Mato Grosso do Sul, associados a estas usinas. Visitas em propriedades pecuárias e usinas foram realizadas em meados de novembro 2009, ao final de surtos por S. calcitrans ocorridos nos municípios de Angélica e Ponta Porã, MS. Entrevistas, observações e coletas de imaturos de dípteros foram realizadas nos locais e o material entomológico coletado foi levado ao laboratório para posterior emergência. Elevadas infestações pela mosca-dos-estábulos e comportamento de agrupamento dos bovinos foram observados. Sítios de reprodução foram encontrados nos locais e a emergência de S. calcitrans foi constatada nas amostras coletadas tanto nas fazendas como nas usinas. O conjunto de informações, observações in loco e resultados das amostragens possibilitaram realizar uma abordagem epidemiológica preliminar sobre a dinâmica dos referidos surtos por S. calcitrans e discutir potenciais fatores de risco.
Intoxicação por Indigofera suffruticosa (Leg. Papilionoideae) em bovinos
Authors: Salvador Islaine de Souza , Medeiros Rosane M.T , Pessoa Clarice R.M , Dantas Antônio F.M , Sucupira Júnior Gerôncio , Riet-Correa Franklin
Published: January 2011

Em uma propriedade do Município de Aparecida, no sertão da Paraíba, foi diagnosticada intoxicação por Indigofera suffruticosa em um rebanho de 25 vacas e um boi que foram colocados em um piquete que continha predominantemente I. suffruticosa onde permaneceram durante 10 dias. No quinto dia de pastejo o proprietário observou urina com coloração vermelho escura em uma vaca e ao final de dez dias de pastejo havia seis vacas doentes apresentando hemoglobinúria e diminuição na produção leiteira. No quinto dia após serem retiradas do pasto uma vaca apresentou agressividade e no sétimo dia foi encontrada morta pela manhã. Na necropsia o fígado apresentava coloração amarelada com pontos avermelhados e aumento do padrão lobular. A bexiga encontrava- se repleta com urina de cor vermelho escura. Os rins estavam escuros e com áreas hemorrágicas, de até 2mm, que se estendiam radialmente para dentro do córtex e parte da medula. Na histologia, os rins apresentavam áreas multifocais de necrose tubular isquêmica aguda com deposição de hemoglobina nas células epiteliais e cilindros de hemoglobina nos túbulos. No fígado havia necrose de coagulação difusa paracentral e ocasionalmente centrolobular. Os demais bovinos afetados se recuperaram espontaneamente 3-8 dias após serem retirados da pastagem. Conclui-se que a intoxicação por I. suffruticosa apesar de apresentar recuperação espontânea na maioria dos bovinos, mesmo se estes continuam ingerindo a planta, pode causar a morte de alguns animais por anemia aguda.
Eficiência de uso da água em genótipos de cana-de-açúcar submetidos à aplicação de herbicidas
Authors: Galon L , Concenço G , Ferreira E.A , Aspiazú I , Silva A.F , Ferreira F.A , Silva A.A , Tironi S.P , Freitas M.A.M , Soares E.R
Published: January 2011

Objetivou-se com este trabalho avaliar os efeitos de ametryn e trifloxysulfuronsodium, em aplicações isoladas ou em mistura, sobre as características associadas à eficiência do uso da água em genótipos de cana-de-açúcar. O delineamento experimental foi em blocos casualizados, com quatro repetições, em parcelas subdivididas. As parcelas foram compostas pelos herbicidas ametryn e trifloxysulfuron-sodium e pela mistura formulada de ametryn + trifloxysulfuron-sodium, aplicados aos 65 dias após o plantio, além de uma testemunha sem presença de plantas daninhas; e as subparcelas, pelos genótipos RB72454, RB835486, RB855113, RB867515, RB947520 e SP80-1816. Decorridos 15 dias da aplicação dos herbicidas, foram realizadas as avaliações de condutância estomática de vapores de água (Gs), gradiente entre temperatura da folha e do ar (ΔT) e taxa de transpiração (E), sendo calculada ainda a eficiência do uso da água (WUE). Foi determinada também a matéria seca da parte aérea das plantas. O genótipo RB855113 foi o que apresentou maiores danos à eficiência do uso da água e transpiração, sendo, por isso, considerado o mais sensível aos herbicidas ametryn e trifloxysulfuron-sodium, enquanto os genótipos SP80-1816 e RB867515 estiveram entre os mais tolerantes. Condutância estomática, temperatura da folha, transpiração e eficiência de uso da água são características eficientes para identificar danos de herbicidas a plantas cultivadas, principalmente aqueles com efeito sobre a taxa fotossintética. Os genótipos de cana-de-açúcar avaliados diferiram quanto à sensibilidade aos herbicidas aplicados; as variedades SP80-1816 e RB867515 destacaram-se como as menos afetadas pelo ametryn e trifloxysulfuron-sodium, isolados ou em mistura, enquanto RB855113 foi a mais sensível.