bluuebunny/crossref_metadata_2025 huggingface dataset:
Supplementary Table S5 from Discovery and Validation of Biomarkers That Distinguish Mucinous and Nonmucinous Pancreatic Cysts
Authors: Park Jisook , Yun Hwan Sic , Lee Kwang Hyuck , Lee Kyu Taek , Lee Jong Kyun , Lee Soo-Youn
Published: April 2023

The evaluation of diagnostic performance with the diagnostic probability score (PS).
Supplementary Figure S3 from Metastatic Competence Can Emerge with Selection of Preexisting Oncogenic Alleles without a Need of New Mutations
Authors: Jacob Leni S. , Vanharanta Sakari , Obenauf Anna C. , Pirun Mono , Viale Agnes , Socci Nicholas D. , Massagué Joan
Published: April 2023

Supplementary Figure S3. Pairwise comparisons of allele frequencies between independently derived metastatic populations.
Supplementary Figure S1 from Metastatic Competence Can Emerge with Selection of Preexisting Oncogenic Alleles without a Need of New Mutations
Authors: Jacob Leni S. , Vanharanta Sakari , Obenauf Anna C. , Pirun Mono , Viale Agnes , Socci Nicholas D. , Massagué Joan
Published: April 2023

Supplementary Figure S1. Mutational spectra of xenograft models and metastatic derivatives.
Supplemental Figure S8 from Syntheses and Discovery of a Novel Class of Cinnamic Hydroxamates as Histone Deacetylase Inhibitors by Multimodality Molecular Imaging in Living Subjects
Authors: Chan C.T. , Qi J. , Smith W. , Paranol R. , Mazitschek R. , West N. , Reeves R. , Chiosis G. , Schreiber S.L. , Bradner J.E. , Paulmurugan R. , Gambhir S.S.
Published: April 2023

Supplemental Figure S8. Analyses of HDAC biomarkers in tumor xenografts in mice treated with 1A12.
Supplemental video 2 from ITPR1 Protects Renal Cancer Cells against Natural Killer Cells by Inducing Autophagy
Authors: Messai Yosra , Noman Muhammad Zaeem , Hasmim Meriem , Janji Bassam , Tittarelli Andrés , Boutet Marie , Baud Véronique , Viry Elodie , Billot Katy , Nanbakhsh Arash , Ben Safta Thouraya , Richon Catherine , Ferlicot Sophie , Donnadieu Emmanuel , Couve Sophie , Gardie Betty , Orlanducci Florence , Albiges Laurence , Thiery Jerome , Olive Daniel , Escudier Bernard , Chouaib Salem
Published: April 2023

Supplemental video 2. 786-0 cells described in Figure 3B were recorded by time-lapse video microscopy
Supplementary Figure Legends from CASC15-S Is a Tumor Suppressor lncRNA at the 6p22 Neuroblastoma Susceptibility Locus
Authors: Russell Mike R. , Penikis Annalise , Oldridge Derek A. , Alvarez-Dominguez Juan R. , McDaniel Lee , Diamond Maura , Padovan Olivia , Raman Pichai , Li Yimei , Wei Jun S. , Zhang Shile , Gnanchandran Janahan , Seeger Robert , Asgharzadeh Shahab , Khan Javed , Diskin Sharon J. , Maris John M. , Cole Kristina A.
Published: April 2023

Supplementary Figure Legends
Supplementary Table S5 from Adaptive Responses to Dasatinib-Treated Lung Squamous Cell Cancer Cells Harboring DDR2 Mutations
Authors: Bai Yun , Kim Jae-Young , Watters January M. , Fang Bin , Kinose Fumi , Song Lanxi , Koomen John M. , Teer Jamie K. , Fisher Kate , Chen Yian Ann , Rix Uwe , Haura Eric B.
Published: April 2023

Supplementary Table S5. Bliss analysis summary of drug combinations with dasatinib in DDR2-mutant squamous cell carcinoma cells.
Supplementary Table S4 from Adaptive Responses to Dasatinib-Treated Lung Squamous Cell Cancer Cells Harboring DDR2 Mutations
Authors: Bai Yun , Kim Jae-Young , Watters January M. , Fang Bin , Kinose Fumi , Song Lanxi , Koomen John M. , Teer Jamie K. , Fisher Kate , Chen Yian Ann , Rix Uwe , Haura Eric B.
Published: April 2023

Supplementary Table S4. Raw heatmap excel spread sheet file for Fig. 4A.
Supplementary Figure 2 from CASC15-S Is a Tumor Suppressor lncRNA at the 6p22 Neuroblastoma Susceptibility Locus
Authors: Russell Mike R. , Penikis Annalise , Oldridge Derek A. , Alvarez-Dominguez Juan R. , McDaniel Lee , Diamond Maura , Padovan Olivia , Raman Pichai , Li Yimei , Wei Jun S. , Zhang Shile , Gnanchandran Janahan , Seeger Robert , Asgharzadeh Shahab , Khan Javed , Diskin Sharon J. , Maris John M. , Cole Kristina A.
Published: April 2023

Bioinformatical support for CASC15-S as a long noncoding transcript.
Supplementary Figures S1-S5 from Adaptive Responses to Dasatinib-Treated Lung Squamous Cell Cancer Cells Harboring DDR2 Mutations
Authors: Bai Yun , Kim Jae-Young , Watters January M. , Fang Bin , Kinose Fumi , Song Lanxi , Koomen John M. , Teer Jamie K. , Fisher Kate , Chen Yian Ann , Rix Uwe , Haura Eric B.
Published: April 2023

Supplementary Figures S1-S5. Quantification of Western blotting bands (S1); LC-MRM analysis of IGF-1R and EGFR tyrosine phosphorylation (S2); Validation of drug effect (S3); Dasatinib-based drug combinations in DDR2-mutant squamous cell lung carcinoma cells (S4); Validation of ligand effects (S5).
Supplementary Materials and Methods from PAD2 Overexpression in Transgenic Mice Promotes Spontaneous Skin Neoplasia
Authors: McElwee John L. , Mohanan Sunish , Horibata Sachi , Sams Kelly L. , Anguish Lynne J. , McLean Dalton , Cvitaš Iva , Wakshlag Joseph J. , Coonrod Scott A.
Published: April 2023

Supplementary Materials and Methods
Supplementary Materials and Methods from CD38-Expressing Myeloid-Derived Suppressor Cells Promote Tumor Growth in a Murine Model of Esophageal Cancer
Authors: Karakasheva Tatiana A. , Waldron Todd J. , Eruslanov Evgeniy , Kim Sang-Bae , Lee Ju-Seog , O'Brien Shaun , Hicks Philip D. , Basu Devraj , Singhal Sunil , Malavasi Fabio , Rustgi Anil K.
Published: April 2023

Supplementary materials and methods
Supplementary Figures S1-S7 from Interleukin-6 Stimulates Defective Angiogenesis
Authors: Gopinathan Ganga , Milagre Carla , Pearce Oliver M.T. , Reynolds Louise E. , Hodivala-Dilke Kairbaan , Leinster David A. , Zhong Haihong , Hollingsworth Robert E. , Thompson Richard , Whiteford James R. , Balkwill Frances
Published: April 2023

Supplementary Figures S1-S7. Western blot quantification of pERK and pSTAT3 from aortic lysates (S1); Western blot quantification of pERK and pSTAT3 from MLEC lysates (S2); Western blot analysis and quantification of pERK and pSTAT3 from HUVEC lysates (S3); IL-6 reduces the expression of NG2 in the aortic ring vessels (S4); Regulation of Notch signaling and Angiopoietin2 by VEGF and IL-6 (S5); Effects of VEGF and IL-6 treatment on HUVEC (S6); Effects of anti-IL-6 antibody on in vivo IGROV-1 vasculature (S7).
Supplementary Figure Legends from Curcumin Promotes Autophagic Survival of a Subset of Colon Cancer Stem Cells, Which Are Ablated by DCLK1-siRNA
Authors: Kantara Carla , O'Connell Malaney , Sarkar Shubhashish , Moya Stephanie , Ullrich Robert , Singh Pomila
Published: April 2023

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Supplementary Fig 2 from Naturally Occurring Mutations in the MPS1 Gene Predispose Cells to Kinase Inhibitor Drug Resistance
Authors: Gurden Mark D. , Westwood Isaac M. , Faisal Amir , Naud Sébastien , Cheung Kwai-Ming J. , McAndrew Craig , Wood Amy , Schmitt Jessica , Boxall Kathy , Mak Grace , Workman Paul , Burke Rosemary , Hoelder Swen , Blagg Julian , Van Montfort Rob L.M. , Linardopoulos Spiros
Published: April 2023

Expression of the p.M600T, p.Y568C and p.C604W MPS1 mutant constructs in DLD1 Flp-In TRex cells recues the spindle assembly checkpoint defect following AZ3146 treatment.
Supplementary Figure S1 from Tristetraprolin Limits Inflammatory Cytokine Production in Tumor-Associated Macrophages in an mRNA Decay–Independent Manner
Authors: Kratochvill Franz , Gratz Nina , Qualls Joseph E. , Van De Velde Lee-Ann , Chi Hongbo , Kovarik Pavel , Murray Peter J.
Published: April 2023

Representative Flow Cytometry plots for the detection of cytokine positive CD11b+ TAMs from WT and p38aÎ”H mice as analyzed in Fig. 6C.
Supplementary Materials and Methods from Selective Inhibition of Parallel DNA Damage Response Pathways Optimizes Radiosensitization of Glioblastoma Stem-like Cells
Authors: Ahmed Shafiq U. , Carruthers Ross , Gilmour Lesley , Yildirim Salih , Watts Colin , Chalmers Anthony J.
Published: April 2023

Supplementary Materials and Methods
Supplementary Figure 2 from STAT3 Blockade Inhibits Radiation-Induced Malignant Progression in Glioma
Authors: Lau Jasmine , Ilkhanizadeh Shirin , Wang Susan , Miroshnikova Yekaterina A. , Salvatierra Nicolas A. , Wong Robyn A. , Schmidt Christin , Weaver Valerie M. , Weiss William A. , Persson Anders I.
Published: April 2023

Figure S2: Fractionated doses of radiation extend survival and induce a PMT in proneural HGG murine model.
Supplementary Figure S2 from Neuroendocrine Transdifferentiation in Human Prostate Cancer Cells: An Integrated Approach
Authors: Cerasuolo Marianna , Paris Debora , Iannotti Fabio A. , Melck Dominique , Verde Roberta , Mazzarella Enrico , Motta Andrea , Ligresti Alessia
Published: April 2023

Supplementary Figure S2. PCA derived scores and loadings plot displaying sample projections of (A) NMR polar spectra, (B) NMR lipid extracts and (C) PCR transcripts values.
Supplementary Figure 2 from Breast Cancer Detection by B7-H3–Targeted Ultrasound Molecular Imaging
Authors: Bachawal Sunitha V. , Jensen Kristin C. , Wilson Katheryne E. , Tian Lu , Lutz Amelie M. , Willmann Jürgen K.
Published: April 2023

Supplementary Figure 2. Microvessel density in whole tissue breast cancer samples.
Supplementary Figures S1-S5 from TUSC4 Functions as a Tumor Suppressor by Regulating BRCA1 Stability
Authors: Peng Yang , Dai Hui , Wang Edward , Lin Curtis Chun-Jen , Mo Wei , Peng Guang , Lin Shiaw-Yih
Published: April 2023

Supplementary Figures S1-S5. NPRL2/TUSC4 up-regulation doesn't correlate with patient survival (S1); Microarray analysis of NPRL2/TUSC4 knockdown cells (S2); The expression of NPRL2/TUSC4-deficient genes are correlated with canonical pathways changes (S3); Histogram of cell cycle distribution for control and NPRL2/TUSC4-deficiency cells (S4); Colony formation assay of NPRL2/TUSC4 overexpression and NPRL2/TUSC4 knockdown cells (S5).
Supplementary Figure Legend from TUSC4 Functions as a Tumor Suppressor by Regulating BRCA1 Stability
Authors: Peng Yang , Dai Hui , Wang Edward , Lin Curtis Chun-Jen , Mo Wei , Peng Guang , Lin Shiaw-Yih
Published: April 2023

Legend for Supplementary Figures S1-S5.
Supplementary Figures S1-S5 from Mast Cells Infiltrating Inflamed or Transformed Gut Alternatively Sustain Mucosal Healing or Tumor Growth
Authors: Rigoni Alice , Bongiovanni Lucia , Burocchi Alessia , Sangaletti Sabina , Danelli Luca , Guarnotta Carla , Lewis Amy , Rizzo Aroldo , Silver Andrew R. , Tripodo Claudio , Colombo Mario P.
Published: April 2023

Supplementary Figures S1-S5. Colon length in wild-type and KitW-sh mice during colitis progression (S1); Il22 and Il22bp relative expression in colon in wild-type and KitW-sh mice (S2); Polyps count in colon of WT and KitW-sh mice (S3); Colorectal cancer development in WT, KitW-sh and KitW-sh REC mice (S4); Summary of MC activity in intestinal mucosal healing and in transformation toward malignancy (S5).
Supplementary Table S7 from Activation Status of the Pregnane X Receptor Influences Vemurafenib Availability in Humanized Mouse Models
Authors: MacLeod A. Kenneth , McLaughlin Lesley A. , Henderson Colin J. , Wolf C. Roland
Published: April 2023

Pharmacokinetic parameters of MBP vemurafenib in huPXR/huCAR/huCYP3A4/3A7 mice.
Supplementary Table S2 from Activation Status of the Pregnane X Receptor Influences Vemurafenib Availability in Humanized Mouse Models
Authors: MacLeod A. Kenneth , McLaughlin Lesley A. , Henderson Colin J. , Wolf C. Roland
Published: April 2023

Spearman's rank correlation of OH-vemurafenib formation with probe substrate activities in a panel of HLM.
Supplementary Figure 4 from Tumor-Induced Pressure in the Bone Microenvironment Causes Osteocytes to Promote the Growth of Prostate Cancer Bone Metastases
Authors: Sottnik Joseph L. , Dai Jinlu , Zhang Honglai , Campbell Brittany , Keller Evan T.
Published: April 2023

Supplementary Figure 4: CCL5 promotes migration and invasion of PCa. A) CCL5 was measured in CM from non-pressurized MLO-Y4 cells after normalization by protein concentration. B) MLO-Y4 CM was incubated with neutralizing antibody (1 µg/ml) against CCL5 and isotype control antibody (1 µg/ml) before being used as a chemoattractant for PCa cell lines. Neutralization of CM derived CCL5 significantly inhibited PCa migration and invasion. C) Based upon measurements of CCL5 produced by OCy at 0 and 40 mmHg, recombinant CCL5 was added to 0 mmHg CM and used in migration and invasion assays. ELISA data was analyzed using Student's two-tailed unpaired t-test. All other data was analyzed by One-way ANOVA with Bonferroni post-test. All bars represent significant relationships of p<0.05.
Supplemental Figures 1 - 5, Figure Legends and Methods from Metabolic Signature Identifies Novel Targets for Drug Resistance in Multiple Myeloma
Authors: Maiso Patricia , Huynh Daisy , Moschetta Michele , Sacco Antonio , Aljawai Yosra , Mishima Yuji , Asara John M. , Roccaro Aldo M. , Kimmelman Alec C. , Ghobrial Irene M.
Published: April 2023

Supplemental Figure 1. Hypoxia-induced drug resistance on MM cells. Supplemental Figure 2. HK2, PFKFB3, PFKFB4 and LDHA expression in MM cell lines. Supplemental Figure 3. (A-B) HIF1A expression in MM1S-shHIF1A. (C) HIF2A expression in MM1S-shHIF2A. (D) Stable knockdown of HIF1A restores the effect of melphalan under hypoxic conditions. (E) HIF1A expression in MM1S-shHIF1A. Supplemental Figure 4. (A-B) HK2 and LDHA expression in MM1S-shHK2, MM1S-shLDHA. (C) Relative mRNA levels of HK2 and LDHA in CD138 + cells 3 from normal donors bone marrow, MGUS, Smoldering myeloma and newly diagnosed myeloma (GSE6477). (D) Stable knockdown of LDHA partially restore the effect of melphalan under hypoxic conditions. (E) PDK1 expression in MM1S-PDK1 expressing cells. (F) Stable overexpression of PDK1 induces resistance to bortezomib in MM1S cells. Supplemental Figure 5. LDHA and HIF1A expression in ANBL6-BRshLDHA, MM1S-HIF1A OE and in MM1S-LDHA OE cells.
Supplementary Table S2 from Hepatocellular Shuttling and Recirculation of Sorafenib-Glucuronide Is Dependent on Abcc2, Abcc3, and Oatp1a/1b
Authors: Vasilyeva Aksana , Durmus Selvi , Li Lie , Wagenaar Els , Hu Shuiying , Gibson Alice A. , Panetta John C. , Mani Sridhar , Sparreboom Alex , Baker Sharyn D. , Schinkel Alfred H.
Published: April 2023

Sorafenib and SG pharmacokinetic parameters in mice and rats.
Supplementary Table S1 from Mdm2 and Aurora Kinase A Inhibitors Synergize to Block Melanoma Growth by Driving Apoptosis and Immune Clearance of Tumor Cells
Authors: Vilgelm Anna E. , Pawlikowski Jeff S. , Liu Yan , Hawkins Oriana E. , Davis Tyler A. , Smith Jessica , Weller Kevin P. , Horton Linda W. , McClain Colt M. , Ayers Gregory D. , Turner David C. , Essaka David C. , Stewart Clinton F. , Sosman Jeffrey A. , Kelley Mark C. , Ecsedy Jeffrey A. , Johnston Jeffrey N. , Richmond Ann
Published: April 2023

Supplementary Table S1. Parameter estimates and interindividual variability for the (â€�)â€�Nutlinâ€�3 pharmacokinetic model.
Supplementary Table S1 from Hepatocellular Shuttling and Recirculation of Sorafenib-Glucuronide Is Dependent on Abcc2, Abcc3, and Oatp1a/1b
Authors: Vasilyeva Aksana , Durmus Selvi , Li Lie , Wagenaar Els , Hu Shuiying , Gibson Alice A. , Panetta John C. , Mani Sridhar , Sparreboom Alex , Baker Sharyn D. , Schinkel Alfred H.
Published: April 2023

Expression of hepatic transporters in various knockout mouse models.
Supplementary Tables S1 and S2 from Dll4 Blockade in Stromal Cells Mediates Antitumor Effects in Preclinical Models of Ovarian Cancer
Authors: Kuhnert Frank , Chen Guoying , Coetzee Sandra , Thambi Nithya , Hickey Carlos , Shan Jing , Kovalenko Pavel , Noguera-Troise Irene , Smith Eric , Fairhurst Jeanette , Andreev Julian , Kirshner Jessica R. , Papadopoulos Nicholas , Thurston Gavin
Published: April 2023

Supplementary Table S1: Dll4 Ab REGN421 binds human and monkey Dll4 with high affinity Supplementary Table S2: Combined blockade of Dll4 and VEGF signaling results in enhanced inhibition of A2780 ovarian tumors
Supplementary Figure Legend from JAK Inhibition Impairs NK Cell Function in Myeloproliferative Neoplasms
Authors: Schönberg Kathrin , Rudolph Janna , Vonnahme Maria , Parampalli Yajnanarayana Sowmya , Cornez Isabelle , Hejazi Maryam , Manser Angela R. , Uhrberg Markus , Verbeek Walter , Koschmieder Steffen , Brümmendorf Tim H. , Brossart Peter , Heine Annkristin , Wolf Dominik
Published: April 2023

Supplementary Figure Legend
Supplemental Methods and References from Oncogenic Transformation Can Orchestrate Immune Evasion and Inflammation in Human Mesenchymal Stem Cells Independently of Extrinsic Immune-Selective Pressure
Authors: Miranda Alex , Funes Juan M. , Sánchez Nilda , Limia Celia M. , Mesa Mónica , Quezada Sergio A. , Pérez Rolando , de León Joel
Published: April 2023

Supplemental Methods and References. Description of additional methods and procedures used in the study. Also includes Supplemental References.
Supplementary Figure S6 from HSP90 Supports Tumor Growth and Angiogenesis through PRKD2 Protein Stabilization
Authors: Azoitei Ninel , Diepold Kristina , Brunner Cornelia , Rouhi Arefeh , Genze Felicitas , Becher Alexander , Kestler Hans , van Lint Johan , Chiosis Gabriela , Koren John , Fröhling Stefan , Scholl Claudia , Seufferlein Thomas
Published: April 2023

Supplementary Figure S6. Proliferation of colon and breast tumors xenografted in nude mice treated with PU-H71 is restored in a PRKD2-dependent manner.
Supplementary Figure 2 from Mitochondrial DNA Copy Number in Peripheral Blood Cells and Risk of Developing Breast Cancer
Authors: Lemnrau Alina , Brook Mark N. , Fletcher Olivia , Coulson Penny , Tomczyk Katarzyna , Jones Michael , Ashworth Alan , Swerdlow Anthony , Orr Nick , Garcia-Closas Montserrat
Published: April 2023

Supplementary Figure 2. Odds ratios and 95% confidence intervals for the association between decides of mtDNA copy number and breast cancer risk
Supplemental Methods and Figure Legends from The Neuronal Pentraxin-2 Pathway Is an Unrecognized Target in Human Neuroblastoma, Which Also Offers Prognostic Value in Patients
Authors: Bartolini Alice , Di Paolo Daniela , Noghero Alessio , Murgia Daniele , Sementa Angela R. , Cilli Michele , Pasqualini Renata , Arap Wadih , Bussolino Federico , Ponzoni Mirco , Pastorino Fabio , Marchiò Serena
Published: April 2023

Supplemental Methods and Figure Legends
Supplementary Figure S2 from A Polymer-Based Antibody–Vinca Drug Conjugate Platform: Characterization and Preclinical Efficacy
Authors: Yurkovetskiy Alexander V. , Yin Mao , Bodyak Natalya , Stevenson Cheri A. , Thomas Joshua D. , Hammond Charles E. , Qin LiuLiang , Zhu Bangmin , Gumerov Dmitry R. , Ter-Ovanesyan Elena , Uttard Alex , Lowinger Timothy B.
Published: April 2023

Sensorgrams of trastuzumab binding the hErbB2 surfaces, ~420 RU (top) and ~1320 RU (bottom).
Supplemental Figure 2 from The Neuronal Pentraxin-2 Pathway Is an Unrecognized Target in Human Neuroblastoma, Which Also Offers Prognostic Value in Patients
Authors: Bartolini Alice , Di Paolo Daniela , Noghero Alessio , Murgia Daniele , Sementa Angela R. , Cilli Michele , Pasqualini Renata , Arap Wadih , Bussolino Federico , Ponzoni Mirco , Pastorino Fabio , Marchiò Serena
Published: April 2023

Supplemental Figure 2: expression levels of NPTX2 and NPTXR in vitro and in vivo
Supplementary Figures S1-S14 from Minor Changes in Expression of the Mismatch Repair Protein MSH2 Exert a Major Impact on Glioblastoma Response to Temozolomide
Authors: McFaline-Figueroa José L. , Braun Christian J. , Stanciu Monica , Nagel Zachary D. , Mazzucato Patrizia , Sangaraju Dewakar , Cerniauskas Edvinas , Barford Kelly , Vargas Amanda , Chen Yimin , Tretyakova Natalia , Lees Jacqueline A. , Hemann Michael T. , White Forest M. , Samson Leona D.
Published: April 2023

Supplementary Figures S1-S14. p53 levels in p53 knockdown GBM cells (S1); TMZR3 cells obtained from a p53 deficient background display increased ploidy (S2); H2AX activation in temozolomide treated parental and TMZR3 GBM cells (S3); In-cell Host cell reactivation (HCR) assays used to assess the MGMT and MMR repair capacity of GBM cells (S4); MSH6 and MSH2 levels in MSH6 and MSH2 knockdown GBM cells (S5); Cell cycle profiles and quantitation of cell cycle changes in TMZ-treated MSH6 knockdown cells two cell cycle times post-TMZ treatment (S6); Cell cycle profiles and quantitation of cell cycle changes in TMZ-treated MSH2 knockdown cells two cell cycle times post-TMZ treatment (S7); Minor decreases in MSH2 levels correlate with acquired TMZ resistance in LN229 and A172 GBM cells (S8); Effects of MSH6 or MSH2 knockdown on the protein level of its dimerization partner (S9); Msh2 knockdown in GL261 glioblastoma cells (S10); Moderate decreases in Msh2 confer a growth advantage to GL261 GBM cells after TMZ, but not BCNU, exposure in vitro (S11); Distribution of patient survival in TMZ treated TCGA GBM patients and effects of MSH2 transcript levels on the survival of TMZ treated patients in the 95th percentile for patient survival after TMZ therapy (S12); Overall survival of GBM patients stratified by MSH3, MLH1 and PMS2 tumor transcript levels (S13); PMS2 transcript levels correlate with increased chromosome 7 copy number (S14).
Supplemental Figure 2 from Evaluating Robustness and Sensitivity of the NanoString Technologies nCounter Platform to Enable Multiplexed Gene Expression Analysis of Clinical Samples
Authors: Veldman-Jones Margaret H. , Brant Roz , Rooney Claire , Geh Catherine , Emery Hollie , Harbron Chris G. , Wappett Mark , Sharpe Alan , Dymond Michael , Barrett J. Carl , Harrington Elizabeth A. , Marshall Gayle
Published: April 2023

Heatmap showing unsupervised hierarchical clustering of matching clinical DLBCL Fresh, Frozen and FFPE tissues with a CodeSet consisting of 320 genes including 33 housekeeping genes. Genes below the LOD were omitted from the analysis.
Supplementary Figure S7 from Blocking Tumor Necrosis Factor α Enhances CD8 T-cell–Dependent Immunity in Experimental Melanoma
Authors: Bertrand Florie , Rochotte Julia , Colacios Céline , Montfort Anne , Tilkin-Mariamé Anne-Françoise , Touriol Christian , Rochaix Philippe , Lajoie-Mazenc Isabelle , Andrieu-Abadie Nathalie , Levade Thierry , Benoist Hervé , Ségui Bruno
Published: April 2023

Supplementary Figure S7. Effect of Etanercept injection in mice.
Supplementary Figure S6 from Blocking Tumor Necrosis Factor α Enhances CD8 T-cell–Dependent Immunity in Experimental Melanoma
Authors: Bertrand Florie , Rochotte Julia , Colacios Céline , Montfort Anne , Tilkin-Mariamé Anne-Françoise , Touriol Christian , Rochaix Philippe , Lajoie-Mazenc Isabelle , Andrieu-Abadie Nathalie , Levade Thierry , Benoist Hervé , Ségui Bruno
Published: April 2023

Supplementary Figure S6. Accumulation of CD8+ TIL in TNF-R1-deficient mice.
Supplementary Figure S4 from Blocking Tumor Necrosis Factor α Enhances CD8 T-cell–Dependent Immunity in Experimental Melanoma
Authors: Bertrand Florie , Rochotte Julia , Colacios Céline , Montfort Anne , Tilkin-Mariamé Anne-Françoise , Touriol Christian , Rochaix Philippe , Lajoie-Mazenc Isabelle , Andrieu-Abadie Nathalie , Levade Thierry , Benoist Hervé , Ségui Bruno
Published: April 2023

Supplementary Figure S4. Analysis of the immune response in draining lymph nodes from WT and TNF-deficient mice.
Supplementary Figure S3 from Blocking Tumor Necrosis Factor α Enhances CD8 T-cell–Dependent Immunity in Experimental Melanoma
Authors: Bertrand Florie , Rochotte Julia , Colacios Céline , Montfort Anne , Tilkin-Mariamé Anne-Françoise , Touriol Christian , Rochaix Philippe , Lajoie-Mazenc Isabelle , Andrieu-Abadie Nathalie , Levade Thierry , Benoist Hervé , Ségui Bruno
Published: April 2023

Supplementary Figure S3. Analysis of the immune response in spleen from WT and TNF-deficient mice.
Supplementary Table Legends from SOCS2 Controls Proliferation and Stemness of Hematopoietic Cells under Stress Conditions and Its Deregulation Marks Unfavorable Acute Leukemias
Authors: Vitali Caterina , Bassani Claudia , Chiodoni Claudia , Fellini Elisa , Guarnotta Carla , Miotti Silvia , Sangaletti Sabina , Fuligni Fabio , De Cecco Loris , Piccaluga Pier P. , Colombo Mario P. , Tripodo Claudio
Published: April 2023

Supplementary Table Legends. Legends for Supplementary Tables S1-S10.
Supplementary Figures S1-S7 from SOCS2 Controls Proliferation and Stemness of Hematopoietic Cells under Stress Conditions and Its Deregulation Marks Unfavorable Acute Leukemias
Authors: Vitali Caterina , Bassani Claudia , Chiodoni Claudia , Fellini Elisa , Guarnotta Carla , Miotti Silvia , Sangaletti Sabina , Fuligni Fabio , De Cecco Loris , Piccaluga Pier P. , Colombo Mario P. , Tripodo Claudio
Published: April 2023

Supplementary Figures S1-S7. SOCS2 is dispensable for basal hematopoietic functions (S1); Histological examination of spleen sections from recipients of I BMT 10 weeks after reconstitution (S2); Composition of the Lin-c-kit+Sca-1- fraction along with serial transplantation (S3); Progressive SOCS2 upregulation in CML patients along with disease progression (S4); IKZF1/Ikaros and MEF2C regulated networks share significative overlap (S5); GSEA enrichment map using C2 curated gene sets collection (S6); qPCR check of the lentiviral transduction of BM Lincells (S7).
Supplementary Tables S1-S3 from Targeting Mitochondria with Avocatin B Induces Selective Leukemia Cell Death
Authors: Lee Eric A. , Angka Leonard , Rota Sarah-Grace , Hanlon Thomas , Mitchell Andrew , Hurren Rose , Wang Xiao Ming , Gronda Marcela , Boyaci Ezel , Bojko Barbara , Minden Mark , Sriskanthadevan Shrivani , Datti Alessandro , Wrana Jeffery L. , Edginton Andrea , Pawliszyn Janusz , Joseph Jamie W. , Quadrilatero Joe , Schimmer Aaron D. , Spagnuolo Paul A.
Published: April 2023

Supplementary Tables S1-S3. Summary of EC50 values for avocatin B in a panel of AML cell lines (S1); AML patient sample details used for annexin/PI (S2); AML patient sample details used for colony formation assays (S3).
Supplementary Figure Legends from SOCS2 Controls Proliferation and Stemness of Hematopoietic Cells under Stress Conditions and Its Deregulation Marks Unfavorable Acute Leukemias
Authors: Vitali Caterina , Bassani Claudia , Chiodoni Claudia , Fellini Elisa , Guarnotta Carla , Miotti Silvia , Sangaletti Sabina , Fuligni Fabio , De Cecco Loris , Piccaluga Pier P. , Colombo Mario P. , Tripodo Claudio
Published: April 2023

Supplementary Figure Legends. Legends for Supplementary Figures S1-S7.
Supplementary Table S3 from Nitrostyrene Derivatives Act as RXRα Ligands to Inhibit TNFα Activation of NF-κB
Authors: Zeng Zhiping , Sun Zhe , Huang Mingfeng , Zhang Weidong , Liu Jie , Chen Liqun , Chen Fan , Zhou Yuqi , Lin Jiacheng , Huang Fengyu , Xu Lin , Zhuang Zixing , Guo Shangjie , Alitongbieke Gulimiran , Xie Guobin , Xu Yang , Lin Bingzhen , Cao Xihua , Su Ying , Zhang Xiao-kun , Zhou Hu
Published: April 2023

Supplementary Table S3. Z-10 and its derivatives.
Supplementary Table S2 from Nitrostyrene Derivatives Act as RXRα Ligands to Inhibit TNFα Activation of NF-κB
Authors: Zeng Zhiping , Sun Zhe , Huang Mingfeng , Zhang Weidong , Liu Jie , Chen Liqun , Chen Fan , Zhou Yuqi , Lin Jiacheng , Huang Fengyu , Xu Lin , Zhuang Zixing , Guo Shangjie , Alitongbieke Gulimiran , Xie Guobin , Xu Yang , Lin Bingzhen , Cao Xihua , Su Ying , Zhang Xiao-kun , Zhou Hu
Published: April 2023

Supplementary Table S2. Z compounds and their carboxyl derivatives.
Supplemental Figure S3 from Metastatic Heterogeneity of Breast Cancer Cells Is Associated with Expression of a Heterogeneous TGFβ-Activating miR424–503 Gene Cluster
Authors: Li Yun , Li Wei , Ying Zhe , Tian Han , Zhu Xun , Li Jun , Li Mengfeng
Published: April 2023

Supplemental Figure S3. Expression of miR-424 or miR-503 in cells transfected with antagomir-424 or antagomir-503.
Supplementary Table S4 from A Molecular Portrait of High-Grade Ductal Carcinoma In Situ
Authors: Abba Martin C. , Gong Ting , Lu Yue , Lee Jaeho , Zhong Yi , Lacunza Ezequiel , Butti Matias , Takata Yoko , Gaddis Sally , Shen Jianjun , Estecio Marcos R. , Sahin Aysegul A. , Aldaz C. Marcelo
Published: April 2023

Supplementary Table S4: Comparison of deregulated long non-coding RNAs and their co-regulated coding transcripts with the list of potentially relevant lncRNAs generated by Su et al.(38)
Supplemental Figure S2 from KRAS Genomic Status Predicts the Sensitivity of Ovarian Cancer Cells to Decitabine
Authors: Stewart Michelle L. , Tamayo Pablo , Wilson Andrew J. , Wang Stephanie , Chang Yun Min , Kim Jong W. , Khabele Dineo , Shamji Alykhan F. , Schreiber Stuart L.
Published: April 2023

A, cell viability after treatment with decitabine (AUC, x-axis) was plotted against the doubling time for each cell line (y-axis) as measured over nine days in 384-well plates at each cell line's optimized density. B, cell viability was measured after treatment with decitabine for nine days in four KRAS-mutant pancreatic cell lines. Data are representative of two independent experiments (14 replicates, mean {plus minus} SD). C, cell viability was measured after treatment with decitabine for nine days in KRAS-mutant (purple) or KRASÃ‚Â¬Ã‚Â¬Ã‚Â¬-wild type colon (gray) cancer cell lines. Data are representative of two independent experiments. Data are representative of two independent experiments (14 replicates, mean {plus minus} SD).
Supplementary Figure S1 from A Molecular Portrait of High-Grade Ductal Carcinoma In Situ
Authors: Abba Martin C. , Gong Ting , Lu Yue , Lee Jaeho , Zhong Yi , Lacunza Ezequiel , Butti Matias , Takata Yoko , Gaddis Sally , Shen Jianjun , Estecio Marcos R. , Sahin Aysegul A. , Aldaz C. Marcelo
Published: April 2023

Supplementary Figure S1: Chromosome regions more frequently affected in DCIS samples as determined by Exome-Seq data analysis using Control-FREEC software.
Supplementary Table 1 from CRMP5 Controls Glioblastoma Cell Proliferation and Survival through Notch-Dependent Signaling
Authors: Moutal Aubin , Honnorat Jérôme , Massoma Patrick , Désormeaux Pauline , Bertrand Caroline , Malleval Céline , Watrin Chantal , Chounlamountri Naura , Mayeur Marie-Eve , Besançon Roger , Naudet Nicolas , Magadoux Léa , Khanna Rajesh , Ducray François , Meyronet David , Thomasset Nicole
Published: April 2023

Clinicopathological characteristics of patients according to CRMP5 status
Supplementary Table and Figure Legends from G-CSF Promotes Neuroblastoma Tumorigenicity and Metastasis via STAT3-Dependent Cancer Stem Cell Activation
Authors: Agarwal Saurabh , Lakoma Anna , Chen Zaowen , Hicks John , Metelitsa Leonid S. , Kim Eugene S. , Shohet Jason M.
Published: April 2023

Supplementary Table and Figure Legends. Legend for Supplementary Tables S1-S3 and Supplementary Figures S1-S7.
Supplemental Figure S7 from CRMP5 Controls Glioblastoma Cell Proliferation and Survival through Notch-Dependent Signaling
Authors: Moutal Aubin , Honnorat Jérôme , Massoma Patrick , Désormeaux Pauline , Bertrand Caroline , Malleval Céline , Watrin Chantal , Chounlamountri Naura , Mayeur Marie-Eve , Besançon Roger , Naudet Nicolas , Magadoux Léa , Khanna Rajesh , Ducray François , Meyronet David , Thomasset Nicole
Published: April 2023

Working model of CRMP5 mechanism to control Notch signaling pathway and cellular proliferation in GBM. (1) Notch receptors are expressed in GBM and activated by interaction with their ligands (2) After activation, notch is cleaved by the γ-secretase complex and (3) the Notch intracellular domain (NICD) is translocated in the nucleus. (4) activates its target genes (hes1, hey1) promoting tumor cells proliferation. Notch activates, by an unknown mechanism, Akt which is another event increasing GBM proliferation and survival and leading to poor patient survival. (6) Notch signaling pathway inhibition is mediated by the E3 ubiquitin ligase (Itch) recruitment which (7) targets the Notch receptors into lysosomal degradation, resulting in Notch signaling pathway inhibition. These events are correlated with increased survival of patients. (8) CRMP5 is expressed in GBM and promotes the Notch signaling pathway over Itch-induced degradation of the Notch receptors thereby leading to sustained activation of the Notch signaling pathway, increased proliferation resulting in decreased overall survival of patients
Supplementary Figure S2 from G-CSF Promotes Neuroblastoma Tumorigenicity and Metastasis via STAT3-Dependent Cancer Stem Cell Activation
Authors: Agarwal Saurabh , Lakoma Anna , Chen Zaowen , Hicks John , Metelitsa Leonid S. , Kim Eugene S. , Shohet Jason M.
Published: April 2023

Supplementary Figure S2. Phospho-flow assay in response to G-CSF, Stattic and anti-G-CSF treatment.
Supplementary Table 5 from Preclinical Characterization of Novel Chordoma Cell Systems and Their Targeting by Pharmocological Inhibitors of the CDK4/6 Cell-Cycle Pathway
Authors: von Witzleben Adrian , Goerttler Lukas T. , Marienfeld Ralf , Barth Holger , Lechel André , Mellert Kevin , Böhm Michael , Kornmann Marko , Mayer-Steinacker Regine , von Baer Alexandra , Schultheiss Markus , Flanagan Adrienne M. , Möller Peter , Brüderlein Silke , Barth Thomas F.E.
Published: April 2023

Results of the single tandem repeats analysis of the cell lines U-CH1, U-CH2, UCH3, UCH6, UCH7, U-CH10, U-CH11 and UCH12. The results of the sex typing marker AMEL and the detected alleles for the markers D3S1358, D1S1656, D2S441, D10S1248, D13S317, Penta E, D16S539, D18S51, D2S1338, CSF1PO, Penta D, TH01, vWA, D21S11, D7S820, D5S818, TPOX, D8S1179, D12S391, D19S433, FGA, D22S1045 are given.
Supplementary Methods, Figures 1 - 3, Table 1 from Quantitative In Vivo Immunohistochemistry of Epidermal Growth Factor Receptor Using a Receptor Concentration Imaging Approach
Authors: Samkoe Kimberley S. , Tichauer Kenneth M. , Gunn Jason R. , Wells Wendy A. , Hasan Tayyaba , Pogue Brian W.
Published: April 2023

Figure S1. The average dissociation constant (kD) for EGFR and anti-EGFR affibody for each tumor line was found using flow cytometry. Figure S2. A representative Western blot demonstrating the wide range of expression levels produced by the tumors analyzed. Figure S3. The in vivo binding potential of EGFR in four tumor models was determined using the RCI method with two different targeted tracers: human EGF (1) and anti-EGF Affibody. Table S1. The hyperbola fitting parameters determined for each dissociation constant trial.
Supplemental Figure S1 from Endothelial ALK1 Is a Therapeutic Target to Block Metastatic Dissemination of Breast Cancer
Authors: Cunha Sara I. , Bocci Matteo , Lövrot John , Eleftheriou Nikolas , Roswall Pernilla , Cordero Eugenia , Lindström Linda , Bartoschek Michael , Haller B. Kristian , Pearsall R. Scott , Mulivor Aaron W. , Kumar Ravindra , Larsson Christer , Bergh Jonas , Pietras Kristian
Published: April 2023

ALK1 expression is endothelial cell-exclusive in mammary tumors from MMTV-PyMT mice.
Supplemental Tables S1-S6 from NUP160–SLC43A3 Is a Novel Recurrent Fusion Oncogene in Angiosarcoma
Authors: Shimozono Naoki , Jinnin Masatoshi , Masuzawa Mamiko , Masuzawa Mikio , Wang Zhongzhi , Hirano Ayaka , Tomizawa Yukiko , Etoh-Kira Tomomi , Kajihara Ikko , Harada Miho , Fukushima Satoshi , Ihn Hironobu
Published: April 2023

Supplementary tables S1-S6: The results of the gene expression analysis as determined by the paired-end transcriptome sequences (S1); The results of the expression analysis of angiogenesis-related genes as determined by the paired-end transcriptome sequences (S2); The putative point mutations in the angiosarcoma cell line (S3); The fusion gene candidates identified by the transcriptome analysis (S4); The clinical and pathological data for the angiosarcoma patients with and without the NUP160-SLC43A3 fusion gene (S5); The expression profiles of the angiogenesis-related genes in the presence or absence of the NUP160-SLC43A3 fusion gene as measured by PCR array in HDMECs (S6).
Supplementary Figure 1 from Manic Fringe Promotes a Claudin-Low Breast Cancer Phenotype through Notch-Mediated PIK3CG Induction
Authors: Zhang Shubing , Chung Wen-Cheng , Wu Guanming , Egan Sean E. , Miele Lucio , Xu Keli
Published: April 2023

Supplementary Figure 1. Generation of the Mfng mutant mice and expression analysis of Mfng in the mouse mammary gland
Supplemental Figure S4 from Oncogenic HRAS Activates Epithelial-to-Mesenchymal Transition and Confers Stemness to p53-Deficient Urothelial Cells to Drive Muscle Invasion of Basal Subtype Carcinomas
Authors: He Feng , Melamed Jonathan , Tang Moon-shong , Huang Chuanshu , Wu Xue-Ru
Published: April 2023

Supplemental Figure S4. Activation of the AKT-β-catenin-ZEB2 signaling axis in muscle-invasive urothelial carcinoma of the bladder.
Table S2 from Interleukin-6 Prevents the Initiation but Enhances the Progression of Lung Cancer
Authors: Qu Zhaoxia , Sun Fan , Zhou Jingjiao , Li Liwen , Shapiro Steven D. , Xiao Gutian
Published: April 2023

Primer pairs used for real-time PCR in the study
Supplementary methods from miR-21 Inhibition Reduces Liver Fibrosis and Prevents Tumor Development by Inducing Apoptosis of CD24+ Progenitor Cells
Authors: Zhang Jing , Jiao Jingjing , Cermelli Silvia , Muir Kyle , Jung Kwang Hwa , Zou Ruhai , Rashid Asif , Gagea Mihai , Zabludoff Sonya , Kalluri Raghu , Beretta Laura
Published: April 2023

this file provide detail methods information that used in the study.
Supplementary Figure 2 from HTLV-1 bZIP Factor RNA and Protein Impart Distinct Functions on T-cell Proliferation and Survival
Authors: Mitobe Yuichi , Yasunaga Jun-ichirou , Furuta Rie , Matsuoka Masao
Published: April 2023

Effects of spliced TTG (sTTG) and unspliced TTG (usTTG) on apoptosis and proliferation
Supplementary Figure legends from miR-21 Inhibition Reduces Liver Fibrosis and Prevents Tumor Development by Inducing Apoptosis of CD24+ Progenitor Cells
Authors: Zhang Jing , Jiao Jingjing , Cermelli Silvia , Muir Kyle , Jung Kwang Hwa , Zou Ruhai , Rashid Asif , Gagea Mihai , Zabludoff Sonya , Kalluri Raghu , Beretta Laura
Published: April 2023

Supplementary Figure legends. this file provide figure legenDs for three supplementary figures
Supplementary Figure S3 from miR-21 Inhibition Reduces Liver Fibrosis and Prevents Tumor Development by Inducing Apoptosis of CD24+ Progenitor Cells
Authors: Zhang Jing , Jiao Jingjing , Cermelli Silvia , Muir Kyle , Jung Kwang Hwa , Zou Ruhai , Rashid Asif , Gagea Mihai , Zabludoff Sonya , Kalluri Raghu , Beretta Laura
Published: April 2023

Supplementary Figure S3. Model diagram of the study results.
Supplementary Figure S2 from miR-21 Inhibition Reduces Liver Fibrosis and Prevents Tumor Development by Inducing Apoptosis of CD24+ Progenitor Cells
Authors: Zhang Jing , Jiao Jingjing , Cermelli Silvia , Muir Kyle , Jung Kwang Hwa , Zou Ruhai , Rashid Asif , Gagea Mihai , Zabludoff Sonya , Kalluri Raghu , Beretta Laura
Published: April 2023

Supplementary Figure S2. Effect of anti-miR-21 treatment on tumor phenotype.
Supplementary Figure S5 from Suppressing TGFβ Signaling in Regenerating Epithelia in an Inflammatory Microenvironment Is Sufficient to Cause Invasive Intestinal Cancer
Authors: Oshima Hiroko , Nakayama Mizuho , Han Tae-Su , Naoi Kuniko , Ju Xiaoli , Maeda Yusuke , Robine Sylvie , Tsuchiya Kiichiro , Sato Toshiro , Sato Hiroshi , Taketo Makoto Mark , Oshima Masanobu
Published: April 2023

Supplementary Figure S5. Representative photographs of the whole intestine of X-ray irradiated wild-type and Tgfbr2ÃŽ?IEC mice.
Supplementary Figure Legends from Suppressing TGFβ Signaling in Regenerating Epithelia in an Inflammatory Microenvironment Is Sufficient to Cause Invasive Intestinal Cancer
Authors: Oshima Hiroko , Nakayama Mizuho , Han Tae-Su , Naoi Kuniko , Ju Xiaoli , Maeda Yusuke , Robine Sylvie , Tsuchiya Kiichiro , Sato Toshiro , Sato Hiroshi , Taketo Makoto Mark , Oshima Masanobu
Published: April 2023

Legends for Supplementary Figures S1-S6.
Figure S1 from A Sucrose-Enriched Diet Promotes Tumorigenesis in Mammary Gland in Part through the 12-Lipoxygenase Pathway
Authors: Jiang Yan , Pan Yong , Rhea Patrea R. , Tan Lin , Gagea Mihai , Cohen Lorenzo , Fischer Susan M. , Yang Peiying
Published: April 2023

Mouse body weight was not affected by high sugar diets.
Supplementary Table S5 from Molecular Portraits of Epithelial, Mesenchymal, and Hybrid States in Lung Adenocarcinoma and Their Relevance to Survival
Authors: Schliekelman Mark J. , Taguchi Ayumu , Zhu Jun , Dai Xudong , Rodriguez Jaime , Celiktas Muge , Zhang Qing , Chin Alice , Wong Chee-Hong , Wang Hong , McFerrin Lisa , Selamat Suhaida A. , Yang Chenchen , Kroh Evan M. , Garg Kavita S. , Behrens Carmen , Gazdar Adi F. , Laird-Offringa Ite A. , Tewari Muneesh , Wistuba Ignacio I. , Thiery Jean P. , Hanash Samir M.
Published: April 2023

Supplementary Table S5. Differentially expressed proteins and gene ontology after TGFB treatment.
Supplementary Table S1 from Molecular Portraits of Epithelial, Mesenchymal, and Hybrid States in Lung Adenocarcinoma and Their Relevance to Survival
Authors: Schliekelman Mark J. , Taguchi Ayumu , Zhu Jun , Dai Xudong , Rodriguez Jaime , Celiktas Muge , Zhang Qing , Chin Alice , Wong Chee-Hong , Wang Hong , McFerrin Lisa , Selamat Suhaida A. , Yang Chenchen , Kroh Evan M. , Garg Kavita S. , Behrens Carmen , Gazdar Adi F. , Laird-Offringa Ite A. , Tewari Muneesh , Wistuba Ignacio I. , Thiery Jean P. , Hanash Samir M.
Published: April 2023

Supplementary Table S1. Proteomic analysis in 38 NSCLC cell lines.
Supplementary Figure S5 from Long Noncoding RNA HULC Modulates Abnormal Lipid Metabolism in Hepatoma Cells through an miR-9–Mediated RXRA Signaling Pathway
Authors: Cui Ming , Xiao Zelin , Wang Yue , Zheng Minying , Song Tianqiang , Cai Xiaoli , Sun Baodi , Ye Lihong , Zhang Xiaodong
Published: April 2023

Supplementary Figure S5. The product cholesterol of ACSL1 is able to up-regulate HULC by activating RXRA in hepatoma cells, Related to Figure 5.
Supplementary Figure S4 from Long Noncoding RNA HULC Modulates Abnormal Lipid Metabolism in Hepatoma Cells through an miR-9–Mediated RXRA Signaling Pathway
Authors: Cui Ming , Xiao Zelin , Wang Yue , Zheng Minying , Song Tianqiang , Cai Xiaoli , Sun Baodi , Ye Lihong , Zhang Xiaodong
Published: April 2023

Supplementary Figure S4. HULC down-regulates miR-9 through inducing methylation of CpG islands in its promoter, Related to Figure 4.
Supplementary Figure S1 from Long Noncoding RNA HULC Modulates Abnormal Lipid Metabolism in Hepatoma Cells through an miR-9–Mediated RXRA Signaling Pathway
Authors: Cui Ming , Xiao Zelin , Wang Yue , Zheng Minying , Song Tianqiang , Cai Xiaoli , Sun Baodi , Ye Lihong , Zhang Xiaodong
Published: April 2023

Supplementary Figure S1. HULC is positively correlated with ACSL1 in clinical HCC tissues and up-regulates ACSL1 in hepatoma cells, Related to Figure 1.
Supplementary Materials, Figures S1-4, Table S1 from IL17 Promotes Mammary Tumor Progression by Changing the Behavior of Tumor Cells and Eliciting Tumorigenic Neutrophils Recruitment
Authors: Benevides Luciana , da Fonseca Denise Morais , Donate Paula Barbim , Tiezzi Daniel Guimarães , De Carvalho Daniel D. , de Andrade Jurandyr M. , Martins Gislaine A. , Silva João S.
Published: April 2023

Supplementary Materials, Figures S1-4, Table S1: Supplementary materials and methods Supplementary Fig. S1. Treatment with anti-IL-17 antibodies inhibits the growth of murine TC-1 tumors. Supplementary Fig. S2. Blockade of IL-17 does not alter the expression of IFN-γ in animals with metastatic mammary tumor. Supplementary Fig. S3. Expression of IL-17A in the tumor tissue of the mice treated or not with anti-Ly6G or anti-IL-6 mAbs. Supplementary Fig. S4. Gene expression profiles of samples from patients with invasive breast tumor. Supplementary Table S1. Primer sequences used in the study.
Supplementary Table S5 from Transcriptome Sequencing Reveals PCAT5 as a Novel ERG-Regulated Long Noncoding RNA in Prostate Cancer
Authors: Ylipää Antti , Kivinummi Kati , Kohvakka Annika , Annala Matti , Latonen Leena , Scaravilli Mauro , Kartasalo Kimmo , Leppänen Simo-Pekka , Karakurt Serdar , Seppälä Janne , Yli-Harja Olli , Tammela Teuvo L.J. , Zhang Wei , Visakorpi Tapio , Nykter Matti
Published: April 2023

Results of the pathway analysis for PCAT5-silenced cells.
Supplementary Figure S2 from Tumorigenic Activity of Merkel Cell Polyomavirus T Antigens Expressed in the Stratified Epithelium of Mice
Authors: Spurgeon Megan E. , Cheng Jingwei , Bronson Roderick T. , Lambert Paul F. , DeCaprio James A.
Published: April 2023

Supplementary Figure S2. Histological abnormalities develop in the lens epithelium of the eye in K14Cre-MCPyV168 mice.
Supplementary Figure Legends from Tumorigenic Activity of Merkel Cell Polyomavirus T Antigens Expressed in the Stratified Epithelium of Mice
Authors: Spurgeon Megan E. , Cheng Jingwei , Bronson Roderick T. , Lambert Paul F. , DeCaprio James A.
Published: April 2023

Supplementary Figure Legends. Legends for Supplementary Figures S1-S2.
Supplementary Materials and Methods from Elevated Expression of the C-Type Lectin CD93 in the Glioblastoma Vasculature Regulates Cytoskeletal Rearrangements That Enhance Vessel Function and Reduce Host Survival
Authors: Langenkamp Elise , Zhang Lei , Lugano Roberta , Huang Hua , Elhassan Tamador Elsir Abu , Georganaki Maria , Bazzar Wesam , Lööf Johan , Trendelenburg George , Essand Magnus , Pontén Fredrik , Smits Anja , Dimberg Anna
Published: April 2023

Description of additional methods and procedures used in the study.
Supplemental Figure S3 from Induction of Vasculogenic Mimicry Overrides VEGF-A Silencing and Enriches Stem-like Cancer Cells in Melanoma
Authors: Schnegg Caroline I. , Yang Moon Hee , Ghosh Subrata K. , Hsu Mei-Yu
Published: April 2023

Supplemental Figure S3. VEGF-A KD does not modulate VM formation or MSLC subpopulations in C8161 or A2058 melanoma xenografts.
Supplemental Figure Legend from Induction of Vasculogenic Mimicry Overrides VEGF-A Silencing and Enriches Stem-like Cancer Cells in Melanoma
Authors: Schnegg Caroline I. , Yang Moon Hee , Ghosh Subrata K. , Hsu Mei-Yu
Published: April 2023

Legends for Supplemental Figures S1-S4.
Supplemental Table S3 from The Distinctive Mutational Spectra of Polyomavirus-Negative Merkel Cell Carcinoma
Authors: Harms Paul William , Vats Pankaj , Verhaegen Monique Elise , Robinson Dan R. , Wu Yi-Mi , Dhanasekaran Saravana Mohan , Palanisamy Nallasivam , Siddiqui Javed , Cao Xuhong , Su Fengyun , Wang Rui , Xiao Hong , Kunju Lakshmi P. , Mehra Rohit , Tomlins Scott A. , Fullen Douglas Randall , Bichakjian Christopher Keram , Johnson Timothy M. , Dlugosz Andrzej Antoni , Chinnaiyan Arul M.
Published: April 2023

Supplemental Table S3. MCPyV detection in MCC tumors by qPCR, immunohistochemistry, and transcriptome sequencing
Supplemental Table S1 from The Distinctive Mutational Spectra of Polyomavirus-Negative Merkel Cell Carcinoma
Authors: Harms Paul William , Vats Pankaj , Verhaegen Monique Elise , Robinson Dan R. , Wu Yi-Mi , Dhanasekaran Saravana Mohan , Palanisamy Nallasivam , Siddiqui Javed , Cao Xuhong , Su Fengyun , Wang Rui , Xiao Hong , Kunju Lakshmi P. , Mehra Rohit , Tomlins Scott A. , Fullen Douglas Randall , Bichakjian Christopher Keram , Johnson Timothy M. , Dlugosz Andrzej Antoni , Chinnaiyan Arul M.
Published: April 2023

Supplemental Table S1. Clinical parameters, MCPyV status, and next-generation sequencing analyses
Supplemental Figure S1 from The Distinctive Mutational Spectra of Polyomavirus-Negative Merkel Cell Carcinoma
Authors: Harms Paul William , Vats Pankaj , Verhaegen Monique Elise , Robinson Dan R. , Wu Yi-Mi , Dhanasekaran Saravana Mohan , Palanisamy Nallasivam , Siddiqui Javed , Cao Xuhong , Su Fengyun , Wang Rui , Xiao Hong , Kunju Lakshmi P. , Mehra Rohit , Tomlins Scott A. , Fullen Douglas Randall , Bichakjian Christopher Keram , Johnson Timothy M. , Dlugosz Andrzej Antoni , Chinnaiyan Arul M.
Published: April 2023

Supplemental Figure S1. Mutational signatures of Merkel cell polyomavirus-negative Merkel cell carcinomas
Supplemental Figure S1 from A Urokinase Receptor–Bim Signaling Axis Emerges during EGFR Inhibitor Resistance in Mutant EGFR Glioblastoma
Authors: Wykosky Jill , Hu Jingjing , Gomez German G. , Taylor Tiffany , Villa Genaro R. , Pizzo Donald , VandenBerg Scott R. , Thorne Amy Haseley , Chen Clark C. , Mischel Paul S. , Gonias Steven L. , Cavenee Webster K. , Furnari Frank B.
Published: April 2023

Supplemental Figure S1. Generation of EGFR TKi resistant glioma cells
Supplementary Figure S7 from PIK3CAH1047R Accelerates and Enhances KRASG12D-Driven Lung Tumorigenesis
Authors: Green Shon , Trejo Christy L. , McMahon Martin
Published: April 2023

In vitro proliferation and cell signaling of lung tumor derived cell lines of defined Kras or Pik3ca genotype.