bluuebunny/crossref_metadata_2025 huggingface dataset:
Sequence-Based Explainable Hybrid Song Recommendation
Authors: Damak Khalil , Nasraoui Olfa , Sanders William Scott
Published: July 2021

Despite advances in deep learning methods for song recommendation, most existing methods do not take advantage of the sequential nature of song content. In addition, there is a lack of methods that can explain their predictions using the content of recommended songs and only a few approaches can handle the item cold start problem. In this work, we propose a hybrid deep learning model that uses collaborative filtering (CF) and deep learning sequence models on the Musical Instrument Digital Interface (MIDI) content of songs to provide accurate recommendations, while also being able to generate a relevant, personalized explanation for each recommended song. Compared to state-of-the-art methods, our validation experiments showed that in addition to generating explainable recommendations, our model stood out among the top performers in terms of recommendation accuracy and the ability to handle the item cold start problem. Moreover, validation shows that our personalized explanations capture properties that are in accordance with the user’s preferences.
Orbital Influence on Precipitation, Fire, and Grass Community Composition From 1.87 to 1.38 Ma in the Turkana Basin, Kenya
Authors: Yost Chad L. , Lupien Rachel L. , Beck Catherine , Feibel Craig S. , Archer Steven R. , Cohen Andrew S.
Published: July 2021

The Turkana Basin in northern Kenya and southern Ethiopia has yielded hundreds of hominin fossils and is among the most important localities in the world for studying human origins. High resolution climate and vegetation reconstructions from this region can elucidate potential linkages between hominin evolution and environmental change. Microcharcoal and phytoliths were examined from a 216 m (1.87–1.38 Ma) drill core (WTK13), which targeted paleo-Lake Lorenyang sediments from the Nachukui Formation of the Turkana Basin. A total of 287 samples were analyzed at ∼32–96 cm intervals, providing millennial-scale temporal resolution. To better understand how basin sediments record fire and vegetation from the watershed, the paleorecord was compared with nine modern sediment samples collected from Lake Turkana along a transect of increasing distance from the 1978 to 1979 shoreline. This included vegetation surveys and phytolith production data for species from areas proximal to the basin. We found that phytolith and microcharcoal concentrations decreased predictably moving off shore. However, phytoliths from plants sourced in the Ethiopian Highlands increased moving off shore, likely the result of increased exposure to the Omo River sediment plume. In our down-core study, microcharcoal was well-preserved but phytolith preservation was poor below ∼60 m (∼1.50 Ma). Spectral analysis revealed that microcharcoal often varied at precessional (∼21 kyr) periodicities, and through a correlation with δDwax, linked orbitally forced peaks in precipitation with elevated fire on the landscape. Phytoliths revealed that alternating mesic C4 versus xeric C4 grass dominance likely varied at precessional periodicities as well, but that grass community composition was also mediated by basin geometry. Two high eccentricity intervals of particularly high amplitude and abrupt environmental change were centered at ∼1.72 and 1.50 Ma, with the intervening period experiencing high fire variability. With the switch from lacustrine to fluvial-deltaic deposition at the core site by 1.5 Ma, mesic C4 grasses dominated and fire activity was high. This upper interval correlated to the time interval from which Nariokotome Boy (Homo erectus/ergaster) was discovered 3 km east of our drill site. Phytoliths indicated a seasonally wet and open landscape dominated by xeric C4 grasses, sedges, and other herbaceous plants.
Electrofusion Stimulation Is an Independent Factor of Chromosome Abnormality in Mice Oocytes Reconstructed via Spindle Transfer
Authors: Wang Wei , Shao Suxia , Chen Wei , Wang Weizhou , Chuai Yunhai , Li Yunfei , Guo Yiming , Han Shujie , Shu Mingming , Wang Qihang , Zhang Lei , Shang Wei
Published: July 2021

Oocytes reconstructed by spindle transfer (ST) are prone to chromosome abnormality, which is speculated to be caused by mechanical interference or premature activation, the mechanism is controversial. In this study, C57BL/6N oocytes were used as the model, and electrofusion ST was performed under normal conditions, Ca2+ free, and at room temperature, respectively. The effect of enucleation and electrofusion stimulation on MPF activity, spindle morphology, γ-tubulin localization and chromosome arrangement was compared. We found that electrofusion stimulation could induce premature chromosome separation and abnormal spindle morphology and assembly by decreasing the MPF activity, leading to premature activation, and thus resulting in chromosome abnormality in oocytes reconstructed via ST. Electrofusion stimulation was an independent factor of chromosome abnormality in oocytes reconstructed via ST, and was not related to enucleation, fusion status, temperature, or Ca2+. The electrofusion stimulation number should be minimized, with no more than 2 times being appropriate. As the electrofusion stimulation number increased, several typical abnormalities in chromosome arrangement and spindle assembly occurred. Although blastocyst culture could eliminate embryos with chromosomal abnormalities, it would significantly decrease the number of normal embryos and reduce the availability of embryos. The optimum operating condition for electrofusion ST was the 37°C group without Ca2+.
The Protective Effect of Metformin on Abdominal Aortic Aneurysm: A Systematic Review and Meta-Analysis
Authors: Yuan Zhen , Heng Zhijian , Lu Yi , Wei Jia , Cai Zhejun
Published: July 2021

Background

Type 2 diabetes mellitus (T2DM) patients have a lower risk of abdominal aortic aneurysm (AAA) and its comorbidities, which might be associated with the usage of metformin. The objective of the study was to evaluate the role of metformin in the process of AAA development.

Method

PubMed, Embase and Cochrane Library were searched up to May 15th, 2021. We implemented several methods including the risk of bias graph, GRADE system and funnel plot to assess the quality and possible bias of this study. Subgroup analysis and sensitivity analysis were applied to address quality differences and validate the robustness of the final results.

Result

Ten articles were enrolled after screening 151 articles searched from databases. The pooled results showed that, compared with T2DM patients without metformin, metformin prescription was associated with a slower annual growth rate of the aneurysm (mean difference (MD) -0.67 cm [95% confidence interval (CI) -1.20 ~ -0.15 cm]). Besides, metformin exposure was associated with a lower frequency of AAA events (odds ratio (OR) 0.61 [95% CI 0.41-0.92]).

Conclusion

Metformin alleviated both annual expansion rate and aneurysm rupture frequency in AAA patients with T2DM.

Systematic Review Registration

PROSPERO, identifier https://www.crd.york.ac.uk/PROSPERO/display_record.php?RecordID=217859 (CRD42020217859).
A High-Precision and Wideband Fundamental Frequency Measurement Method for Synchronous Sampling Used in the Power Analyzer
Authors: Wang Yifan , Chen Kai , Gou Xuan , He Renjun , Zhou Wenjian , Yang Sheng , Qiu Gen
Published: July 2021

In the dedicated high-precision power quality analyzer, synchronous sampling is required to reduce the effect of spectrum leakage produced by the discrete Fourier transform process. Thus, accurate fundamental frequency measurement is urgently needed. However, due to the harmonics and noise in the power signal, it is difficult to achieve the accurate fundamental frequency measurement. Moreover, with the wide application of high-frequency programmable power supply, the fundamental frequency is gradually increasing, which requires power analyzers to have the abilities of both high precision and a wide range of the fundamental frequency measurement. To solve these issues, a new fundamental frequency measurement architecture used in synchronous sampling is proposed. This architecture consists of a small-point fast Fourier transform module, spectrum refinement algorithm, and a multimodal optimization method to calculate the accurate fundamental frequency under large harmonic conditions. In the practical hardware platform results, this architecture has a large fundamental frequency measurement range from 20 Hz to 200 kHz with a relative error which is <0.004%. The wideband fundamental frequency measurement structure proposed in this article achieves high measurement accuracy.
Torrefied Biomass and Where Is the Sector Currently Standing in Terms of Research, Technology Development, and Implementation
Authors: Wild Michael , Calderón Cristina
Published: July 2021

Torrefaction is a thermal conversion method of biomass used to produce a high-quality solid biofuel that can be used for combustion, gasification, and additional non–energy-related applications. Torrefied biomass has numerous advantages above today’s standard biomass fuels like log wood, wood chips, and white wood pellets (WWPs). This is known and promoted for long, and has been proven in numerous research and demonstration projects; however, large-scale industrial proof is still underway only in these days. First, project implementations with name plate capacity of 100 kmt/a or higher are in construction or hot commissioning. In this review, the main advantages of torrefaction are shortly described, and the latest industry developments and future opportunities for the products as well as areas of need for further R&D are presented.
Spatial Scale Dependence of Ecological Factors That Regulate Functional and Phylogenetic Assembly in a Mediterranean High Mountain Grassland
Authors: Pescador David S. , de Bello Francesco , López-Angulo Jesús , Valladares Fernando , Escudero Adrián
Published: July 2021

Understanding how functional and phylogenetic patterns vary among scales and along ecological gradients within a given species pool is critical for inferring community assembly processes. However, we lack a clear understanding of these patterns in stressful habitats such as Mediterranean high mountains where ongoing global warming is expected to affect species fitness and species interactions, and subsequently species turnover. In this study, we investigated 39 grasslands with the same type of plant community and very little species turnover across an elevation gradient above the treeline at Sierra de Guadarrama National Park in central Spain. In particular, we assessed functional and phylogenetic patterns, including functional heterogeneity, using a multi-scale approach (cells, subplots, and plots) and determined the relevance of key ecological factors (i.e., elevation, potential solar radiation, pH, soil organic carbon, species richness, and functional heterogeneity) that affect functional and phylogenetic patterns at each spatial scale. Overall, at the plot scale, coexisting species tended to be more functionally and phylogenetically similar. By contrast, at the subplot and cell scales, species tended to be more functionally different but phylogenetically similar. Functional heterogeneity at the cell scale was comparable to the variation across plots along the gradient. The relevance of ecological factors that regulate diversity patterns varied among spatial scales. An increase in elevation resulted in functional clustering at larger scales and phylogenetic overdispersion at a smaller scale. The soil pH and organic carbon levels exhibited complex functional patterns, especially at small spatial scales, where an increase in pH led to clustering patterns for the traits related to the leaf economic spectrum (i.e., foliar thickness, specific leaf area, and leaf dry matter content). Our findings confirm the presence of primary environmental filters (coldness and summer drought at our study sites) that constrain the regional species pool, suggesting the presence of additional assembly mechanisms that act at the smallest scale (e.g., micro-environmental gradients and/or species interactions). Functional and phylogenetic relatedness should be determined using a multi-scale approach to help interpret community assembly processes and understand the initial community responses to environmental changes, including ongoing global warming.
The Application of High-Throughput Technologies for the Study of Microbiome and Cancer
Authors: Wei Lu Qi , Cheong Io Hong , Yang Guang Huan , Li Xiao Guang , Kozlakidis Zisis , Ding Lei , Liu Ning Ning , Wang Hui
Published: July 2021

Human gut microbiome research, especially gut microbiome, has been developing at a considerable pace over the last decades, driven by a rapid technological advancement. The emergence of high-throughput technologies, such as genomics, transcriptomics, and others, has afforded the generation of large volumes of data, and in relation to specific pathologies such as different cancer types. The current review identifies high-throughput technologies as they have been implemented in the study of microbiome and cancer. Four main thematic areas have emerged: the characterization of microbial diversity and composition, microbial functional analyses, biomarker prediction, and, lastly, potential therapeutic applications. The majority of studies identified focus on the microbiome diversity characterization, which is reaching technological maturity, while the remaining three thematic areas could be described as emerging.
Macrophage Polarization Modulated by Porcine Circovirus Type 2 Facilitates Bacterial Coinfection
Authors: Zhang Wen , Fu Zhendong , Yin Hongyan , Han Qingbing , Fan Wenhui , Wang Fangkun , Shang Yingli
Published: July 2021

Polarization of macrophages to different functional states is important for mounting responses against pathogen infections. Macrophages are the major target cells of porcine circovirus type 2 (PCV2), which is the primary causative agent of porcine circovirus–associated disease (PCVAD) leading to immense economic losses in the global swine industry. Clinically, PCV2 is often found to increase risk of other pathogenic infections yet the underlying mechanisms remain to be elusive. Here we found that PCV2 infection skewed macrophages toward a M1 status through reprogramming expression of a subset of M1-associated genes and M2-associated genes. Mechanistically, induction of M1-associated genes by PCV2 infection is dependent on activation of nuclear factor kappa B (NF-κB) and c-jun N-terminal kinase (JNK) signaling pathways whereas suppression of M2-associated genes by PCV2 is via inhibiting expression of jumonji domain containing-3 (JMJD3), a histone 3 Lys27 (H3K27) demethylase that regulates M2 activation of macrophages. Finally, we identified that PCV2 capsid protein (Cap) directly inhibits JMJD3 transcription to restrain expression of interferon regulatory factor (IRF4) that controls M2 macrophage polarization. Consequently, sustained infection of PCV2 facilitates bacterial infection in vitro. In summary, these findings showed that PCV2 infection functionally modulated M1 macrophage polarization via targeting canonical signals and epigenetic histone modification, which contributes to bacterial coinfection and virial pathogenesis.
High Frequency Occult Hepatitis B Virus Infection Detected in Non-Resolved Donations Suggests the Requirement of Anti-HBc Test in Blood Donors in Southern China
Authors: Ye Xianlin , Zhao Yu , Li Ran , Li Tong , Zheng Xin , Xiong Wen , Zeng Jinfeng , Xu Min , Chen Limin
Published: July 2021

Background

Most Chinese Blood Centers adopted mini pool (MP) nucleic acid testing (NAT) for HBV screening due to high cost of Individual donation (ID) NAT, and different proportions of MP-reactive but ID-non-reactive donations (MP+/ID−, defined as non-resolved donations) have been observed during daily donor screening process. Some of these non-resolved donations are occult HBV infections (OBIs), which pose potential risk of HBV transmission if they are not deferred. This study is aimed to further analyze these non-resolved donations.

Methods

The non-resolved plasma samples were further analyzed by serological tests and various HBV DNA amplification assays including quantitative PCR (qPCR) and nested PCR amplifying the basic core and pre-core promoter regions (BCP/PC; 295 base pairs) and HBsAg (S) region (496 base pairs). Molecular characterizations of HBV DNA+ non-resolved samples were determined by sequencing analysis.

Results

Of 17,226 MPs from 103,356 seronegative blood donations, 98 MPs were detected reactive for HBV. Fifty-six out of these 98 (57.1%) reactive MPs were resolved as HBV DNA+, but the remaining 42 pools (42.9%, 252 donations) were left non-resolved with a high rate (53.2%) of anti-HBc+. Surprisingly, among 42 non-resolved MPs, 17 contained one donation identified as OBIs by alternative NAT assays. Sequence analysis on HBV DNAs extracted from these OBI donations showed some key mutations in the S region that may lead to failure in HBsAg detection and vaccine escape.

Conclusion

A total of 53.2% of the non-resolved donations were anti-HBc+, and OBIs were identified in 40.5% of these non-resolved pools. Therefore, non-resolved donations with anti-HBc+ might pose potential risk for HBV transmission. Our present analysis indicates that anti-HBc testing in non-resolved donations should be used to identify OBIs in order to further increase blood safety in China.
Identification of COVID-19 and Dengue Host Factor Interaction Networks Based on Integrative Bioinformatics Analyses
Authors: Zheng Wenjiang , Wu Hui , Liu Chengxin , Yan Qian , Wang Ting , Wu Peng , Liu Xiaohong , Jiang Yong , Zhan Shaofeng
Published: July 2021

Background

The outbreak of Coronavirus disease 2019 (COVID-19) has become an international public health crisis, and the number of cases with dengue co-infection has raised concerns. Unfortunately, treatment options are currently limited or even unavailable. Thus, the aim of our study was to explore the underlying mechanisms and identify potential therapeutic targets for co-infection.

Methods

To further understand the mechanisms underlying co-infection, we used a series of bioinformatics analyses to build host factor interaction networks and elucidate biological process and molecular function categories, pathway activity, tissue-specific enrichment, and potential therapeutic agents.

Results

We explored the pathologic mechanisms of COVID-19 and dengue co-infection, including predisposing genes, significant pathways, biological functions, and possible drugs for intervention. In total, 460 shared host factors were collected; among them, CCL4 and AhR targets were important. To further analyze biological functions, we created a protein-protein interaction (PPI) network and performed Molecular Complex Detection (MCODE) analysis. In addition, common signaling pathways were acquired, and the toll-like receptor and NOD-like receptor signaling pathways exerted a significant effect on the interaction. Upregulated genes were identified based on the activity score of dysregulated genes, such as IL-1, Hippo, and TNF-α. We also conducted tissue-specific enrichment analysis and found ICAM-1 and CCL2 to be highly expressed in the lung. Finally, candidate drugs were screened, including resveratrol, genistein, and dexamethasone.

Conclusions

This study probes host factor interaction networks for COVID-19 and dengue and provides potential drugs for clinical practice. Although the findings need to be verified, they contribute to the treatment of co-infection and the management of respiratory disease.
Cetaceans Sightings During Research Cruises in Three Remote Atlantic British Overseas Territories
Authors: Martin Stephanie M. , Soeffker Marta , Schofield Andy , Hobbs Rhys , Glass Trevor , Morley Simon A.
Published: July 2021

Marine mammal sightings were recorded during research cruises to three remote, mid-ocean British Overseas Territories in the South Atlantic and Southern Ocean. In March to April 2018 and 2019, the Exclusive Economic Zones (EEZs) of tropical St Helena and temperate Tristan da Cunha were surveyed. The sub-polar waters of South Georgia and the South Sandwich Islands (SGSSI) were surveyed in February to March 2019. At St Helena in 2018, five species were recorded during 11 sightings, and in 2019, four species, with one additional unidentified species, during seven sightings. Most of these sightings were of dolphin species, which are known to be resident around the Island and seamounts. In Tristan da Cunha in 2018, a total of five identified and one unidentified species were recorded during six sightings, half of which were associated with the Islands or seamounts. In 2019, due to rough weather, no sightings were recorded in the Tristan da Cunha waters. Around SGSSI, 162 sightings of 236 cetaceans were made in 2019, mostly of baleen whales, with seven species identified with certainty. Sightings around the southern South Sandwich Islands included beaked whales and large dolphins, whereas baleen whales dominated in the northern South Sandwich Islands. These results provide new data for rarely surveyed regions, helping to build a spatial picture of important areas for marine mammals, which will help inform marine spatial protection strategies.
Assisted Coral Reproduction in the Dominican Republic: A Successful Story to Replicate in the Caribbean
Authors: Sellares-Blasco Rita I. , Villalpando Maria F. , Guendulain-García Sergio D. , Croquer Aldo
Published: July 2021

Coral assisted fertilization, larval rearing and recruit propagation success in significant ecological scales, largely depend on scaling up and replicating these efforts in as many regions as possible. The Dominican Foundation for Marine Studies (FUNDEMAR) has become a pioneer of these efforts in the Dominican Republic, being the first institution to successfully implement coral sexual reproduction techniques in the country and establishing the first mobile larvae culturing facility. Here we share our perspective on three main components behind the success of FUNDEMAR’s program: (1) a self-sustainable program in alliance with local and international organizations, (2) the design and construction of the first Coral Assisted Reproduction Laboratory in the country, and a (3) clearly defined scalable structure for outcome performance. Two years after program implementation, FUNDEMAR has successfully produced an annual regional coral spawning prediction calendar, cultured seven coral species, and seeded over 4,500 substrates with more than 268,200 sexual coral recruits in approximately 1,880 m2 reef areas. Here, we provide a detailed description of a fully functional assisted coral reproduction program, including the lessons learned during its implementation as well as a series of specific solutions. We hope this work will help and inspire other countries and small institutions to replicate FUNDEMAR’s coral assisted reproduction program components and contribute to the expansion of sexual coral restoration efforts in the Caribbean.
Phytoplankton Bloom Dynamics in Incubated Natural Seawater: Predicting Bloom Magnitude and Timing
Authors: Ok Jin Hee , Jeong Hae Jin , You Ji Hyun , Kang Hee Chang , Park Sang Ah , Lim An Suk , Lee Sung Yeon , Eom Se Hee
Published: July 2021

Phytoplankton blooms can cause imbalances in marine ecosystems leading to great economic losses in diverse industries. Better understanding and prediction of blooms one week in advance would help to prevent massive losses, especially in areas where aquaculture cages are concentrated. This study has aimed to develop a method to predict the magnitude and timing of phytoplankton blooms using nutrient and chlorophyll-a concentrations. We explored variations in nutrient and chlorophyll-a concentrations in incubated seawater collected from the coastal waters off Yeosu, South Korea, seven times between May and August 2019. Using the data from a total of seven bottle incubations, four different linear regressions for the magnitude of bloom peaks and four linear regressions for the timing were analyzed. To predict the bloom magnitude, the chlorophyll-a peak or peak-to-initial ratio was analyzed against the initial concentrations of NO3 or the ratio of the initial NO3 to chlorophyll-a. To predict the timing, the chlorophyll-a peak timing or the growth rate against the natural log of NO3 or the natural log of the ratio of the initial NO3 to chlorophyll-a was analyzed. These regressions were all significantly correlated. From these regressions, we developed the best-fit equations to predict the magnitude and timing of the bloom peak. The results from these equations led to the predicted bloom magnitude and timing values showing significant correlations with those of natural seawater in other regions. Therefore, this method can be applied to predict bloom magnitude and timing one week in advance and give aquaculture farmers time to harvest fish in cages early or move the cages to safer regions.
Methane-Derived Authigenic Carbonates on the Seafloor of the Laptev Sea Shelf
Authors: Kravchishina Marina D. , Lein Alla Yu , Flint Mikhail V. , Baranov Boris V. , Miroshnikov Alexey Yu , Dubinina Elena O. , Dara Olga M. , Boev Andrey G. , Savvichev Alexander S.
Published: July 2021

Seafloor authigenic carbonate crusts are widespread in various oceanic and marine settings, excluding high-latitude basins that are corrosive to carbonate precipitation. Newly formed carbonate formations are relatively rare in modern Arctic marine sediments. Although the first-order principles of seep carbonate formation are currently quite well constrained, little is known regarding the duration or mode of carbonate formation in the Siberian Arctic shelf. Large (massive slabs or blocks) and small crusts that were micrite cemented have been recently discovered on the seafloor of the Siberian Arctic seas within the area of known seep activity in the outer Laptev Sea shelf. Cold methane seeps were detected in the area due to the presence of an acoustic anomaly in the water column (gas flares). Microbial mats, methane gas bubbles, and carbonate crusts were observed using a towed camera platform. Here, we report new geochemical and mineralogical data on authigenic shallow Siberian Arctic cold-seep carbonate crusts to elucidate its genesis. The Laptev Sea carbonate crusts mainly consist of high-Mg calcite (up to 23 mol % MgCO3). The δ13C values in carbonates range significantly (from –40.1 to –25.9‰ VPDB), while the δ18O values vary in a narrow range (+4.4 ± 0.2‰ VPDB). The δ13C values of Corg that was determined from carbonates range from –40.2 to –31.1‰ VPDB. Using the isotope data and taking into account the geological setting, we consider that not only microbial but possibly thermogenic methane participated in the authigenic carbonate precipitation. Carbonate crust formation occurred below the water/sediment interface of the shallow Siberian Arctic shelf as a result of gas hydrate dissociation during Holocene warming events. The studied carbonate crusts were exhumated after precipitation into shallow subsurface shelf sediments.
This Review Recent Advances in Chitosan and Alginate‐Based Hydrogels for Wound Healing Application
Authors: Kibungu Cuthbert , Kondiah Pierre P. D. , Kumar Pradeep , Choonara Yahya E.
Published: July 2021

Wound healing is a complicated yet necessary event that takes place in both animals and human beings for the body to repair itself due to injury. Wound healing involves various stages that ensure the restoration of the injured tissue at the end of the process. Wound dressing material acts as a protective extracellular barrier against potential damage to the injury and microbial invasion. Naturally, polysaccharides (chitosan and alginate) have inherent properties that have made them attractive for their usage in wound healing therapy. Alginate and chitosan have been used to develop novel wound healing and smart biomaterials due to various functionalities such as reducing swelling, non-toxic nature, biocompatibility, antimicrobial potential, and maintenance moist environment, ability to absorb wound fluid, and skin regeneration promotion. Functionalization of polysaccharides is one of the many approaches that have been used to modify and enhance the wound healing properties of these biomaterials. Many studies have been done to modify the polysaccharide hydrogels. Some of these are highlighted in this paper. The designing and development of smart hydrogels that react to their environment have recently sparked a significant scientific and pharmaceutical interest. Smart hydrogel development has been the primary focal area for developing highly advanced and sophisticated wound healing therapeutic technologies. This paper seeks to comprehensively shed light on the advancements of functionalized chitosan and alginate-based hydrogels and their applicability in wound healing therapeutics. In addition to this, thus identifying critical drawbacks faced in existing hydrogel systems and how prospective technologies enable digitally controlled bio-platforms coupled with biomaterials to improve wound care. This review hopes to stimulate and encourage researchers to identify future avenues worth investigation.
Basic Research on Tendon Repair: Strategies, Evaluation, and Development
Authors: Li Zhi Jie , Yang Qian Qian , Zhou You Lang
Published: July 2021

Tendon is a fibro-elastic structure that links muscle and bone. Tendon injury can be divided into two types, chronic and acute. Each type of injury or degeneration can cause substantial pain and the loss of tendon function. The natural healing process of tendon injury is complex. According to the anatomical position of tendon tissue, the clinical results are different. The wound healing process includes three overlapping stages: wound healing, proliferation and tissue remodeling. Besides, the healing tendon also faces a high re-tear rate. Faced with the above difficulties, management of tendon injuries remains a clinical problem and needs to be solved urgently. In recent years, there are many new directions and advances in tendon healing. This review introduces tendon injury and sums up the development of tendon healing in recent years, including gene therapy, stem cell therapy, Platelet-rich plasma (PRP) therapy, growth factor and drug therapy and tissue engineering. Although most of these therapies have not yet developed to mature clinical application stage, with the repeated verification by researchers and continuous optimization of curative effect, that day will not be too far away.
Liver Stiffness Is a Predictor of Rebleeding in Patients With Hepatitis B-Related Cirrhosis: A Real-World Cohort Study
Authors: Liu Linxiang , Nie Yuan , Zhang Yue , Liu Qi , Zhu Xuan
Published: July 2021

Background: Esophageal vein rebleeding is a life-threatening complication of liver cirrhosis. However, the role of non-invasive methods that were developed to evaluate the severity of chronic liver disease, especially in rebleeding, remains unclear.

Aims: To evaluate the performance of liver stiffness and non-invasive fibrosis scores in predicting esophageal vein rebleeding in hepatitis B virus (HBV) cirrhotic patients.

Methods: A prospective analysis of 194 HBV patients between 2017 and 2021 was performed. Receiver operating characteristic (ROC) curves and time-dependent ROC curves were used to assess the power for predicting rebleeding with non-invasive fibrosis score and liver stiffness.

Results: During the median follow-up time of 68.28 weeks, 55 patients experienced rebleeding. In the entire cohort, the area under the ROC curve for liver stiffness measurement (LSM) predicting for rebleeding was 0.837, with a cut-off value of 17.79 kPa, and the time-dependent ROC curve also showed stable prediction performance of LSM. The predictive ability of the non-invasive fibrosis score was less than that of LSM, and there were statistical differences. Moreover, patients using non-selective beta-blockers and HBV DNA-negative patients experienced significantly reduced rebleeding.

Conclusions: Compared with non-invasive fibrosis scores, LSM can more simply and accurately predict rebleeding events of hepatitis B liver cirrhosis.
SARS-CoV-2 Spike Protein Extrapolation for COVID Diagnosis and Vaccine Development
Authors: Malik Yashpal S. , Kumar Prashant , Ansari Mohd Ikram , Hemida Maged G. , El Zowalaty Mohamed E. , Abdel-Moneim Ahmed S. , Ganesh Balasubramanian , Salajegheh Sina , Natesan Senthilkumar , Sircar Shubhankar , Safdar Muhammad , Vinodhkumar O. R. , Duarte Phelipe M. , Patel Shailesh K. , Klein Jörn , Rahimi Parastoo , Dhama Kuldeep
Published: July 2021

Severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2) led to coronavirus disease 2019 (COVID-19) pandemic affecting nearly 71.2 million humans in more than 191 countries, with more than 1.6 million mortalities as of 12 December, 2020. The spike glycoprotein (S-protein), anchored onto the virus envelope, is the trimer of S-protein comprised of S1 and S2 domains which interacts with host cell receptors and facilitates virus-cell membrane fusion. The S1 domain comprises of a receptor binding domain (RBD) possessing an N-terminal domain and two subdomains (SD1 and SD2). Certain regions of S-protein of SARS-CoV-2 such as S2 domain and fragment of the RBD remain conserved despite the high selection pressure. These conserved regions of the S-protein are extrapolated as the potential target for developing molecular diagnostic techniques. Further, the S-protein acts as an antigenic target for different serological assay platforms for the diagnosis of COVID-19. Virus-specific IgM and IgG antibodies can be used to detect viral proteins in ELISA and lateral flow immunoassays. The S-protein of SARS-CoV-2 has very high sequence similarity to SARS-CoV-1, and the monoclonal antibodies (mAbs) against SARS-CoV-1 cross-react with S-protein of SARS-CoV-2 and neutralize its activity. Furthermore, in vitro studies have demonstrated that polyclonal antibodies targeted against the RBD of S-protein of SARS-CoV-1 can neutralize SARS-CoV-2 thus inhibiting its infectivity in permissive cell lines. Research on coronaviral S-proteins paves the way for the development of vaccines that may prevent SARS-CoV-2 infection and alleviate the current global coronavirus pandemic. However, specific neutralizing mAbs against SARS-CoV-2 are in clinical development. Therefore, neutralizing antibodies targeting SARS-CoV-2 S-protein are promising specific antiviral therapeutics for pre-and post-exposure prophylaxis and treatment of SARS-CoV-2 infection. We hereby review the approaches taken by researchers across the world to use spike gene and S-glycoprotein for the development of effective diagnostics, vaccines and therapeutics against SARA-CoV-2 infection the COVID-19 pandemic.
Lipopolysaccharide Alters the m6A Epitranscriptomic Tagging of RNAs in Cardiac Tissue
Authors: Han Ye-Chen , Xie Hong-Zhi , Lu Bo , Xiang Ruo-Lan , Zhang Hai-Peng , Li Jing-Yi , Zhang Shu-Yang
Published: July 2021

N6-methyladenosine (m6A) modification plays important roles in the pathology of a variety of diseases. However, the roles of m6A modification in sepsis-induced myocardial dysfunction are not well defined. Rats were divided into control and lipopolysaccharide (LPS)-induced sepsis group. Global m6A levels of left ventricle tissue were measured by LC-MS/MS, and transcriptome-wide m6A modifications were profiled using epitranscriptomic microarrays (mRNAs and lncRNAs). Bioinformatics analysis was conducted to understand the functional implications of m6A modifications during sepsis. Methylated lncRNAs and mRNAs were measured by m6A single-base site qPCR. The global m6A levels in left ventricle tissue were significantly decreased in the LPS group. While 27 transcripts (23 mRNAs and four lncRNAs) were hypermethylated, 46 transcripts (39 mRNAs and 7 lncRNAs) were hypomethylated in the LPS group. The mRNA expression of writers and readers was significantly decreased in the LPS group. The m6A modification of Clec1b, Stk38l and Tnfrsf26 was associated with platelet activation and apoptotic pathways. Moreover, the decrease in m6A modification of lncRNA XR_346,771 may be related to cation import in cardiac tissue. Our data provide novel information regarding changes to m6A modifications in cardiac tissue during sepsis, and m6A modifications might be promising therapeutic targets.
Contribution of Energy Dysfunction to Impaired Protein Translation in Neurodegenerative Diseases
Authors: Liu Yu-Ju , Chern Yijuang
Published: July 2021

Impaired energy homeostasis and aberrant translational control have independently been implicated in the pathogenesis of neurodegenerative diseases. AMP kinase (AMPK), regulated by the ratio of cellular AMP and ATP, is a major gatekeeper for cellular energy homeostasis. Abnormal regulation of AMPK has been reported in several neurodegenerative diseases, including Alzheimer’s disease (AD) and amyotrophic lateral sclerosis (ALS). Most importantly, AMPK activation is known to suppress the translational machinery by inhibiting the mechanistic target of rapamycin complex 1 (mTORC1), activating translational regulators, and phosphorylating nuclear transporter factors. In this review, we describe recent findings on the emerging role of protein translation impairment caused by energy dysregulation in neurodegenerative diseases.
Systematic Review Estimating the Burden of Dementia in the Latin America and Caribbean Region: A Bayesian Approach
Authors: Xiang Yawen , Vilmenay Kimberly , Poon Adrienne N. , Ayanian Shant , Aitken Christopher F. , Chan Kit Yee
Published: July 2021

Background: The global burden of dementia has increasingly shifted to low- and middle-income regions that lack essential data for monitoring epidemiological progression, and policy and planning support. Drawing upon data that have emerged since the last known estimates published in 2015, this study aims to update dementia estimates in the Latin America and Caribbean (LAC) region for the years 2020, 2030, and 2050 through the application of a recently validated Bayesian approach for disease estimates useful when data sources are scarce.

Methods: A comprehensive parallel systematic review of PubMed, EMBASE, PsycINFO, Global Health, and LILACS was conducted to identify prospective population-based epidemiological studies on dementia published in English from 2013 to 2018 in LAC. English and non-English data cited by a recent review on dementia estimates in LAC were also examined for additional data. A Bayesian normal-normal hierarchical model (NNHM) was developed to estimate age-specific and age-adjusted dementia prevalence in people aged 60+. Using age-specific population projections from the UN, the total number of people affected by dementia for the years 2020, 2030, and 2050 were estimated.

Results: 1,414 studies were identified, of which only 7 met the inclusion criteria. The studies had 7,684 participants and 1,191 dementia cases. The age-standardized prevalence of all forms of dementia in LAC was 8% (95% CI: 5–11.5%) in people aged 60+. The estimated prevalence varied with age, increasing from 2.5% (95% CI: 0.08–4.0%) in the 60-69 age group, to 9.4% (95% CI: 5.4–13.2%) in the 70–79 age group and 28.9% (95% CI: 20.3–37.2%) in the ≥80 age group. The number of people age 60 and older living with dementia in LAC in 2020 was estimated at 6.86 (95% CI: 4.3–9.8) million, 9.94 (95% CI: 6.16–14.15) million in 2030, and 19.33 (95% CI: 12.3–13.6) million in 2050.

Conclusion: We project an upward disease trajectory for dementia in LAC countries. The projection is likely an underestimation of the true dementia burden given the underrepresentation of rural and socio-economically deprived populations. More research is urgently needed to improve the accuracy of disease estimates, guide clinicians to improve evaluations for earlier recognition of dementia, and support the development of effective policies for improving dementia prevention, diagnosis and clinical management in LAC's diverse and aging communities.
Coffee and Tea Consumption Impact on Amyotrophic Lateral Sclerosis Progression: A Multicenter Cross-Sectional Study
Authors: Cucovici Aliona , Ivashynka Andrei , Fontana Andrea , Russo Sergio , Mazzini Letizia , Mandrioli Jessica , Lisnic Vitalie , Muresanu Dafin Fior , Leone Maurizio Angelo
Published: July 2021

Background/objectives: Amyotrophic lateral sclerosis (ALS) is a devastating and still untreatable motor neuron disease. The causes of ALS are unknown, but nutritional factors may impact the rate of disease progression. We aimed to ascertain the influence of coffee and tea consumption on ALS progression rate.

Subjects/methods: In this multicenter cross-sectional study, we recruited 241 patients, 96 females, and 145 males; the mean age at onset was 59.9 ± 11.8 years. According to El Escorial criteria, 74 were definite ALS, 77 probable, 55 possible, and 35 suspected; 187 patients had spinal onset and 54 bulbar. Patients were categorized into three groups, according to their ΔFS (derived from ALS Functional Rating Scale-Revised score and disease duration from onset): slow (81), intermediate (80), and fast progressors (80).

Results: Current coffee consumers were 179 (74.3%), 34 (14.1%) were non-consumers, and 22 (9.1%) were former consumers, whereas six (2.5%) consumed decaffeinated coffee only. The log-ΔFS was weakly correlated with the duration of coffee consumption (p = 0.034), but not with the number of cup-years, or the intensity of coffee consumption (cups/day). Current tea consumers were 101 (41.9%), 6 (2.5%) were former consumers, and 134 (55.6%) were non-consumers. Among current and former consumers, 27 (25.2%) consumed only green tea, 51 (47.7%) only black tea, and 29 (27.1%) both. The log-ΔFS was weakly correlated only with the consumption duration of black tea (p = 0.028) but not with the number of cup-years.

Conclusions: Our study does not support the hypothesis that coffee or tea consumption is associated with the ALS progression rate.
Significant Increase of Erectile Dysfunction in Men With Post-stroke: A Comprehensive Review
Authors: Zhao Shankun , Wu Weizhou , Wu Panxing , Ding Chao , Xiao Bingxiang , Xu Zhengbao , Hu Yan , Shen Maolei , Feng Lu
Published: July 2021

Men with erectile dysfunction (ED) are considered to be at risk from stroke events. Conversely, post-stroke patients are also at high risk of ED, whereas a quantitative result from all the relevant studies has not been previously addressed. Therefore, we have performed a comprehensive review and meta-analysis on this issue. This study was registered on PROSPERO (ID No. CRD42021226618). Twenty studies with a total of 3,382 stroke events were included, of which six studies were included for quantitative analysis, and the remaining 14 studies were calculated for the ratio of ED. Synthetic results from four eligible studies providing the ED cases showed that stroke patients were associated with a significantly higher risk of ED than the general population [pooled relative risk (RR) = 3.32, 95% confidence interval (CI): 1.25–8.82, P = 0.016]. Men with stroke were also found to be associated with a significant decline in International Index of Erectile Function −5 (IIEF-5) score as compared with the healthy controls [three studies, standard mean differences (SMD) = −1.8, 95% CI: −2.94 to −0.67, P = 0.002]. The prevalence of ED in post-stroke patients among 14 studies ranged from 32.1 to 77.8%, which was dramatically higher than that of the general population. The result of the GRADE-pro revealed that the quality of the evidence in this study was moderate. The present study has confirmed the high prevalence of ED in men with stroke. ED in stroke patients is a result of both neurological and psychological factors. Rehabilitative interventions rather than phosphodiesterase-5 (PDE-5) inhibitors are recommended to improve the erectile function for those survivors with ED.
Mobile Attention Bias Modification Training Is a Digital Health Solution for Managing Distress in Multiple Sclerosis: A Pilot Study in Pediatric Onset
Authors: Charvet Leigh , George Allan , Cho Hyein , Krupp Lauren B. , Dennis-Tiwary Tracy A.
Published: July 2021

Introduction: Emotional health is important dimension of care for patients living with pediatric onset multiple sclerosis (POMS), but few options are available for stress and anxiety reduction. The high burden of interventions requiring regular in person and onsite visits for treatment are less feasible. Attention bias modification training (ABMT) is effective for anxiety reduction in adult and adolescent populations. We tested the feasibility and preliminary efficacy of ABMT delivered through a mobile gamified version as a digital emotional health tool for patients with POMS.

Methods: Participants with POMS were consecutively recruited from the NYU Langone Pediatric MS Care Center and enrolled to complete a 1-month intervention with use of the Personal Zen ABMT app on their mobile personal device. Feasibility was evaluated by use of the 1-month intervention and efficacy was measured by changes in depression, anxiety, and affect.

Results: A total n = 35 patients with POMS were enrolled in the study (Mage = 17.7, SD = 2.2 years, range 14–23). Feasibility criteria were met with 74% completing the full intervention time, and 100% of the sample completing at least 50% of targeted intervention use. Initial efficacy was found for a reduction in negative affect from baseline to intervention end [M = 22.88, SD = 9.95 vs. M = 19.56, SD = 7.37; t(33) = 2.47, p = 0.019]. Anxiety also significantly decreased from pre to post-intervention in adults [M = 11.82, SD = 9.90 vs. M = 7.29, SD = 7.17; t(16) = 3.88, p = 0.001] and youth [M = 51.14, SD = 19.66 vs. M = 40.86, SD = 27.48; t(13) = 3.17, p = 0.007].

Conclusion: Mobile ABMT with the Personal Zen app is a feasible and accessible digital emotional health tool for patients with POMS and may have broader application for managing distress across chronic neurological conditions.
Action Sounds Informing Own Body Perception Influence Gender Identity and Social Cognition
Authors: Clausen Sünje , Tajadura-Jiménez Ana , Janssen Christian P. , Bianchi-Berthouze Nadia
Published: July 2021

Sensory information can temporarily affect mental body representations. For example, in Virtual Reality (VR), visually swapping into a body with another sex can temporarily alter perceived gender identity. Outside of VR, real-time auditory changes to walkers’ footstep sounds can affect perceived body weight and masculinity/femininity. Here, we investigate whether altered footstep sounds also impact gender identity and relation to gender groups. In two experiments, cisgender participants (26 females, 26 males) walked with headphones which played altered versions of their own footstep sounds that sounded more typically male or female. Baseline and post-intervention measures quantified gender identity [Implicit Association Test (IAT)], relation to gender groups [Inclusion of the Other-in-the-Self (IOS)], and perceived masculinity/femininity. Results show that females felt more feminine and closer to the group of women (IOS) directly after walking with feminine sounding footsteps. Similarly, males felt more feminine after walking with feminine sounding footsteps and associated themselves relatively stronger with “female” (IAT). The findings suggest that gender identity is temporarily malleable through auditory-induced own body illusions. Furthermore, they provide evidence for a connection between body perception and an abstract representation of the Self, supporting the theory that bodily illusions affect social cognition through changes in the self-concept.