bluuebunny/crossref_metadata_2025 huggingface dataset:
Meta-analysis of machine learning models for the diagnosis of central precocious puberty based on clinical, hormonal (laboratory) and imaging data
Authors: Chen Yilin , Huang Xueqin , Tian Lu
Published: March 2024

Background

Central precocious puberty (CPP) is a common endocrine disorder in children, and its diagnosis primarily relies on the gonadotropin-releasing hormone (GnRH) stimulation test, which is expensive and time-consuming. With the widespread application of artificial intelligence in medicine, some studies have utilized clinical, hormonal (laboratory) and imaging data-based machine learning (ML) models to identify CPP. However, the results of these studies varied widely and were challenging to directly compare, mainly due to diverse ML methods. Therefore, the diagnostic value of clinical, hormonal (laboratory) and imaging data-based ML models for CPP remains elusive. The aim of this study was to investigate the diagnostic value of ML models based on clinical, hormonal (laboratory) and imaging data for CPP through a meta-analysis of existing studies.

Methods

We conducted a comprehensive search for relevant English articles on clinical, hormonal (laboratory) and imaging data-based ML models for diagnosing CPP, covering the period from the database creation date to December 2023. Pooled sensitivity, specificity, positive likelihood ratio (LR+), negative likelihood ratio (LR-), summary receiver operating characteristic (SROC) curve, and area under the curve (AUC) were calculated to assess the diagnostic value of clinical, hormonal (laboratory) and imaging data-based ML models for diagnosing CPP. The I2 test was employed to evaluate heterogeneity, and the source of heterogeneity was investigated through meta-regression analysis. Publication bias was assessed using the Deeks funnel plot asymmetry test.

Results

Six studies met the eligibility criteria. The pooled sensitivity and specificity were 0.82 (95% confidence interval (CI) 0.62-0.93) and 0.85 (95% CI 0.80-0.90), respectively. The LR+ was 6.00, and the LR- was 0.21, indicating that clinical, hormonal (laboratory) and imaging data-based ML models exhibited an excellent ability to confirm or exclude CPP. Additionally, the SROC curve showed that the AUC of the clinical, hormonal (laboratory) and imaging data-based ML models in the diagnosis of CPP was 0.90 (95% CI 0.87-0.92), demonstrating good diagnostic value for CPP.

Conclusion

Based on the outcomes of our meta-analysis, clinical and imaging data-based ML models are excellent diagnostic tools with high sensitivity, specificity, and AUC in the diagnosis of CPP. Despite the geographical limitations of the study findings, future research endeavors will strive to address these issues to enhance their applicability and reliability, providing more precise guidance for the differentiation and treatment of CPP.
Losses in fishery ecosystem services of the Dnipro river Delta and the Kakhovske reservoir area caused by military actions in Ukraine
Authors: Novitskyi Roman , Hapich Hennadii , Maksymenko Maksym , Kutishchev Pavlo , Gasso Viktor
Published: March 2024

We studied the development of commercial and recreational fishing on the Kakhovske Reservoir (aka Kakhovka) and the Dnipro (aka Dnieper) River lowlands in 2020–2023. The fish assemblage of the Kakhovske Reservoir is under consideration for the period 1956–2021. The dynamics of the fish population transformation, species extinction, and the emergence of new invasive species are given. The losses in Kakhovske Reservoir’s ecosystem services as a result of the Kakhovska Hydroelectric Power Plant’s (HPP) Dam explosion in June 2023 are analyzed. The states and prospects for local recreational and commercial fishing development are assessed. By field research and monitoring observations of the Kakhovske Reservoir and the Dnipro River lowland using the Earth remote sensing data, it was established that 2 months after the accident, the area of the remained reservoir water surface was ∼430 km2 (about 19% of the initial, including the restored Dnipro River bed). The newly formed shallow waterbodies, which do not have a water connection between each other, occupy an area of about 300 km2. These areas continue to dry out, shrink, and become overgrown with vegetation. The draining of the Kakhovske Reservoir caused an ecological disaster for about 40 species and subspecies of fish. The total monetary losses of commercial fishing are about $5.5 million annually. Losses in fishery from the vanishing of spawning grounds are estimated at 20,000 tons of fish resources (∼$40 million). The negative consequences of the loss of the Kakhovske Reservoir aquatic ecosystems will affect the socio-economic development of the entire South of Ukraine for a long time. Among the major ecosystem services lost is the cessation of water supply. Ukraine’s priority issues are the post-war rehabilitation of the country, its degraded lands, territories, and water areas, and ensuring water and food security. One of the urgent problems will be the feasibility of reconstruction of the Kakhovska HPP’s Dam and restoration of the Reservoir, renovation of water supply, fishery, navigation, energy, and recreation. Biodiversity is a basis for the efficient and sustainable ecosystem functions that provide many ecosystem services, and it should be considered for the post-war recovery and development of Ukraine.
The threat of a major tree pathogen to forest soil mesofauna food webs and ecosystem functioning
Authors: Struijk Marijke , Stavert Jamie R. , Le Grice Rebecca J. , Schwendenmann Luitgard , Romera Poppy Joaquina , Mitchell Grace , Sünnemann Marie , Yang Jaynie , Hjelm Fredrik , Barnes Andrew D.
Published: March 2024

Tree pathogens threaten the survival of many forest foundation tree species worldwide. However, there is limited knowledge of how dieback of foundation tree species may threaten other components of forest ecosystems, such as soil biodiversity and associated ecosystem functions. Kauri (Agathis australis), threatened by the root-borne pathogen Phytophthora agathidicida, are culturally and ecologically significant tree species that exert great influence on soil properties. We aimed to characterise soil mesofauna community structure and energy fluxes in kauri forests and assess the potential threat that tree pathogens such as P. agathidicida pose to belowground ecosystems. We sampled soil mesofauna communities and identified specimens to functional feeding groups at 24 pairs of kauri and adjacent broadleaf trees in sites across the Waitākere Ranges Regional Park, Aotearoa – New Zealand. We attributed kauri canopy health scores, measured tree diameter, slope, forest floor depth, and soil carbon dioxide efflux. We also analysed soil samples for P. agathidicida presence, total carbon, and total nitrogen. We constructed soil mesofauna food webs associated with kauri and broadleaf trees, and assessed the uniqueness of food webs associated with kauri and the impacts of P. agathidicida on density, biomass, mean body mass, and energy fluxes of mesofauna taxonomic and trophic groups. We found omnivores with larger body mass at kauri where P. agathidicida was detected (i.e., P. agathidicida-positive soils). Compared to broadleaf trees, mesofauna density and biomass were lower in soils under kauri, and body masses of Symphyla and omnivores were smaller in soils under kauri. Differences in mesofauna community response variables between tree types were mainly modulated by the soil C:N ratio, which had positive effects under broadleaf and neutral to negative effects under kauri. Energy fluxes to detritivores and fungivores were greater under larger trees, regardless of tree type or P. agathidicida detection status. Our findings suggest that kauri support soil mesofauna food webs that are distinctly different from those found under broadleaf trees in the same habitat. A decreased presence of this foundation species may be linked to future impacts on soil mesofauna in this forest ecosystem with increasingly advanced stages of kauri dieback.
Radial growth response of Pinus Yunnanensis to climate in high mountain forests of northwestern Yunnan, southwestern China
Authors: Xie Siyu , Yan Tao , Sun Xueyi , Chen Hai , Sun Mei , Zhang Yun
Published: March 2024

Understanding the relationship between tree growth and environmental conditions is essential to elucidating the impact of global climate change on forest ecosystems. We used the dendrochronology method to examine the growth sensitivity of a typical conifer to climate change in mountain forests of Central Hengduan Mountain. The study involved the establishment of tree ring width chronologies of Pinus yunnanensis in both Haba Snow Mountain (HB) and Yulong Snow Mountain (YL) in northwestern Yunnan, enabling the detection of the relationship between its radial growth and climates, i.e., monthly total precipitation, monthly temperatures (average minimum, mean and maximum) and monthly Palmer Drought Severity Index (PDSI). Response function and redundancy analysis (RDA) were used to identify correlations between climate variables and radial growth, and moving interval analysis was applied to determine the stability of climate-growth relationship. The findings demonstrated that the growth of P. yunnanensis had similar response patterns to climate change at two sites, exhibiting growth synchronization and common signals. Specifically, the radial growth of P. yunnanensis was negatively correlated with May temperature, while temperature in current October significantly promoted radial growth. Precipitation in June was the common climate variable with inverse effects between two sites, with positive impacts on YL and negative impacts on HB. The results of moving interval analysis were consistent with response function and RDA, presenting significant correlations in many years for those climatic variables significantly affecting tree growth. Stability analysis also revealed that the climate-growth relationship could fluctuate over a small range of time scales, induced by an abrupt change in climate. A forecast of strengthen in growth of P. yunnanensis forests was expected, since increases in precipitation and temperature of most months would benefit tree growth, and negative impacts of May temperature would be offset by the increase of precipitation in the corresponding month. These results could provide a basis for developing sustainable strategies of forest management under the climate change.
IL-22 signaling promotes sorafenib resistance in hepatocellular carcinoma via STAT3/CD155 signaling axis
Authors: Chen Junzhang , Sun Shiran , Li Hui , Cai Xiong , Wan Chidan
Published: March 2024

Introduction

Sorafenib is currently the first-line treatment for patients with advanced hepatocellular carcinoma (HCC). Nevertheless, sorafenib resistance remains a huge challenge in the clinic. Therefore, it is urgent to elucidate the mechanisms underlying sorafenib resistance for developing novel treatment strategies for advanced HCC. In this study, we aimed to investigate the role and mechanisms of interleukin-22 (IL-22) in sorafenib resistance in HCC.

Methods

The in vitro experiments using HCC cell lines and in vivo studies with a nude mouse model were used. Calcium staining, chromatin immunoprecipitation, lactate dehydrogenase release and luciferase reporter assays were employed to explore the expression and roles of IL-22, STAT3 and CD155 in sorafenib resistance.

Results

Our clinical results demonstrated a significant correlation between elevated IL-22 expression and poor prognosis in HCC. Analysis of transcriptomic data from the phase-3 STORM-trial (BIOSTORM) suggested that STAT3 signaling activation and natural killer (NK) cell infiltration may associate sorafenib responses. STAT3 signaling could be activated by IL-22 administration in HCC cells, and then enhanced sorafenib resistance in HCC cells by promoting cell proliferation and reducing apoptosis in vitro and in vivo. Further, we found IL-22/STAT3 axis can transcriptionally upregulate CD155 expression in HCC cells, which could significantly reduce NK cell-mediated HCC cell lysis in a co-culture system.

Conclusions

Collectively, IL-22 could contribute to sorafenib resistance in HCC by activating STAT3/CD155 signaling axis to decrease the sensitivities of tumor cells to sorafenib-mediated direct cytotoxicity and NK cell-mediated lysis. These findings deepen the understanding of how sorafenib resistance develops in HCC in terms of IL-22/STAT3 signaling pathway, and provide potential targets to overcome sorafenib resistance in patients with advanced HCC.
Long-term sediment organic carbon remineralization in different seagrass and macroalgae habitats: implication for blue carbon storage
Authors: Yamuza-Magdaleno Alba , Jiménez-Ramos Rocío , Casal-Porras Isabel , Brun Fernando G. , Egea Luis G.
Published: March 2024

Seagrass and macroalgae beds are key blue carbon ecosystems in the ocean. However, coastal development and climate change are sparking a growing concern about the vulnerability of sediment organic carbon (OC) to remineralization after macrophyte perturbation. Thus, the aim of this study was to assess the potential of long-term remineralization of sediment OC stocks (1 year) in coastal vegetated habitats (i.e., seagrasses Zostera noltei and Cymodocea nodosa, macroalgae Caulerpa prolifera and unvegetated sediment) after complete disturbance of macrophyte meadows under conducive conditions to microorganisms growth (i.e., oxygen saturated, non-nutrient limitation, turbulence and dark). Leached dissolved organic carbon (DOC) from particulate organic carbon (POC) remineralization, carbonate dissolution and photo-reactivity of long-term persistent DOC were also evaluated. Our results evidenced that, sediment OC from Z. noltei and unvegetated habitats were entirely remineralized to CO2. However, sediment OC from C. nodosa and C. prolifera communities exhibited a significant fraction of recalcitrant OC, and therefore, a 42 and 46% of the sediment OC still remained after 1 year of culture, respectively. POC remineralization released relevant amounts of both labile and recalcitrant DOC, which showed low photo-reactivity. Finally, we discuss that the main argument to promote management, monitoring, and restoration programs for macrophytes is usually based on their sediment OC deposit, which favor larger species. The study presented here adds arguments to also include small macrophyte species, since their sediment OC may be highly labile and entirely remineralized to CO2 once these habitats are disturbed.
Analyzing resistome in soil and Human gut: a study on the characterization and risk evaluation of antimicrobial peptide resistance
Authors: Zhao Chongyi , Yan Shuo , Luo Ying , Song Yuzhu , Xia Xueshan
Published: March 2024

Objective

The limited existing knowledge regarding resistance to antimicrobial peptides (AMPs) is hindering their broad utilization. The aim of this study is to enhance the understanding of AMP resistance, a pivotal factor in the exploration of alternative drug development in response to the escalating challenge of antibiotic resistance.

Methods

We utilized metagenomic functional selection to analyze genes resistant to AMPs, with a specific focus on the microbiota in soil and the human gut. Through a combination of experimental methods and bioinformatics analyses, our investigation delved into the possibilities of the evolution of resistance to AMPs, as well as the transfer or interchange of resistance genes among the environment, the human body, and pathogens. Additionally, we examined the cross-resistance between AMPs and evaluated interactions among AMPs and conventional antibiotics.

Results

The presence of AMP resistance, including various resistance mechanisms, was observed in both soil and the human gut microbiota, as indicated by our findings. Significantly, the study underscored the facile evolution of AMP resistance and the potential for gene sharing or exchange among different environments. Notably, cross-resistance among AMPs was identified as a phenomenon, while cross-resistance between AMPs and antibiotics was found to be relatively infrequent.

Conclusion

The results of our study highlight the significance of taking a cautious stance when considering the extensive application of AMPs. It is imperative to thoroughly assess potential resistance risks, with a particular focus on the development of resistance to AMPs across diverse domains. A comprehensive grasp of these aspects is essential for making well-informed decisions and ensuring the responsible utilization of AMPs in the ongoing fight against antibiotic resistance.
Mode of administration influences plasma levels of active Centella asiatica compounds in 5xFAD mice while markers of neuroinflammation remain unaltered
Authors: Speers Alex B. , Wright Kirsten M. , Brandes Mikah S. , Kedjejian Nareg , Matthews Donald G. , Caruso Maya , Harris Christopher J. , Koike Seiji , Nguyen Thuan , Quinn Joseph F. , Soumyanath Amala , Gray Nora E.
Published: March 2024

Introduction

A water extract of Centella asiatica (L.) Urban [Apiaceae] (CAW) has demonstrated cognitive-enhancing effects in mouse models of Alzheimer’s disease and aging, the magnitude of which is influenced by whether CAW is delivered in the drinking water or the diet. These cognitive benefits are accompanied by improvements in oxidative stress and mitochondrial function in the brain, two pathways related to the neuroinflammatory response. The effect of CAW on neuroinflammation, however, has not been directly studied. Here, we investigated the effect of CAW on neuroinflammation in 5xFAD mice and compared plasma levels of CAW’s active compounds following two modes of CAW administration.

Methods

Eight-to-nine-month-old male and female 5xFAD mice and their wild-type littermates were administered CAW in their diet or drinking water (0 or 1,000 mg/kg/day) for five weeks. Immunohistochemistry was performed for β-amyloid (Aβ), glial fibrillary acidic protein (GFAP), and Griffonia simplicifolia lectin I (GSL I) in the cortex and hippocampus. Gene expression of inflammatory mediators (IL-6, TNFα, IL-1β, TREM2, AIF1, CX3CR1, CX3CL1, CD36, C3AR1, RAGE, CCR6, CD3E) was measured in the deep grey matter.

Results

CAW decreased cortical Aβ plaque burden in female 5xFAD mice administered CAW in the drinking water but had no effect on Aβ plaques in other treatment groups. CAW did not impact elevated levels of GFAP or GSL I in 5xFAD mice, regardless of sex, brain region, or mode of CAW administration. In the deep grey matter, CAW increased C3AR1 expression in 5xFAD females administered CAW in the drinking water and decreased IL-1β expression in 5xFAD males administered CAW in the diet. CAW had no effect, however, on gene expression levels of any other inflammatory mediator in the deep grey, for either sex or mode of CAW administration. Mice administered CAW in the drinking water versus the diet had significantly higher plasma levels of CAW compounds.

Discussion

CAW had little impact on the neuroinflammatory markers selected for evaluation in the present study, suggesting that the cognitive benefits of CAW may not be mediated by an anti-inflammatory effect or that additional molecular markers are needed to fully characterize the effect of CAW on neuroinflammation.
Development of a highly sensitive colloidal gold semiquantitative method for the determination of difenoconazole residues in citrus
Authors: Wang Ruobing , Gong Min , Liu Yang , Zhu Weiran , Zhang Kai , Zhao Yidi , Yin Chen , Liu Yuan , Wang Jian , Wan Yuping
Published: March 2024

Introduction

Difenoconazole (DIFE) is a common pesticide used in citrus cultivation; excessive intake can cause neurological damage to the organism, and the existing colloidal gold immunochromatographic test strips cannot meet the requirements for the detection of citrus samples.

Methods

Difenoconazole test strip was prepared based on the colloidal gold immunochromatographic technique (GICT), and its application in citrus samples was investigated; with colloidal gold (CG) as the probe, the optimization of GICT parameters, and the determination of reaction method, the immunochromatographic test strips for the detection of DIFE in citrus was developed, and the limit of detection (LOD), specificity, accuracy, and stability of the test strips were verified.

Results

The results showed that the visual detection limit of the prepared colloidal gold immunochromatographic test strips was 0.2 mg/kg and the quantitative range was 0.06–0.6 mg/kg, and the test strips could specifically identify DIFE and have no cross-reaction with other common triazole pesticides. The detection method established in this study was verified by the GC–MS method, and the detection results achieved good consistency (R2 > 0.98).

Conclusion

The test strips developed in this study have good performance and can be used for highly sensitive detection of citrus samples.
PIAS family in cancer: from basic mechanisms to clinical applications
Authors: Li Xiaomeng , Rasul Azhar , Sharif Farzana , Hassan Mudassir
Published: March 2024

Protein inhibitors of activated STATs (PIAS) are proteins for cytokine signaling that activate activator-mediated gene transcription. These proteins, as versatile cellular regulators, have been described as regulators of approximately 60 proteins. Dysregulation of PIAS is associated with inappropriate gene expression that promotes oncogenic signaling in multiple cancers. Multiple lines of evidence have revealed that PIAS family members show modulated expressions in cancer cells. Most frequently reported PIAS family members in cancer development are PIAS1 and PIAS3. SUMOylation as post-translational modifier regulates several cellular machineries. PIAS proteins as SUMO E3 ligase factor promotes SUMOylation of transcription factors tangled cancer cells for survival, proliferation, and differentiation. Attenuated PIAS-mediated SUMOylation mechanism is involved in tumorigenesis. This review article provides the PIAS/SUMO role in the modulation of transcriptional factor control, provides brief update on their antagonistic function in different cancer types with particular focus on PIAS proteins as a bonafide therapeutic target to inhibit STAT pathway in cancers, and summarizes natural activators that may have the ability to cure cancer.
Pan-cancer and single-cell analyses identify CD44 as an immunotherapy response predictor and regulating macrophage polarization and tumor progression in colorectal cancer
Authors: Zhang Qian , Wang Xinyu , Liu Yang , Xu Hao , Ye Chun
Published: March 2024

Introduction

Cluster of differentiation (CD) 44 is a non-kinase cell surface transmembrane glycoprotein critical for tumor maintenance and progression.

Methods

We conducted a systematic analysis of the expression profile and genomic alteration profile of CD44 in 33 types of cancer. The immune characteristics of CD44 were comprehensively explored by TIMER2.0 and CIBERSORT. In addition, the CD44 transcriptional landscape was examined at the single-cell level. Then, Pseudotime trajectory analysis of CD44 gene expression was performed using Monocle 2, and CellChat was utilized to compare the crosstalk differences between CD44+monocytes and CD44- monocytes. Tumor immune dysfunction and exclusion (TIDE) was used to evaluate the predictive ability of CD44 for immune checkpoint blockade (ICB) responses. The effects of CD44 on colorectal cancer (CRC) and macrophage polarization were investigated by knocking down the expression of CD44 in HCT-116 cell and macrophages in vitro.

Results

The expression of CD44 elevated in most cancers, predicting unfavorable prognosis. In addditon, CD44 was correlation with immune cell infiltration and key immune regulators. CD44+ monocytes had a higher information flow intensity than CD44- monocytes. CD44 had good predictive ability for immune checkpoint blockade responses. Knockdown of CD44 inhibited the proliferation, migration, and invasion of HCT-116 cell in vitro. Knockdown of CD44 inhibited M2 macrophage polarization.

Discussion

These findings suggest that CD44 is involved in regulating tumor development, macrophage polarization, and has certain predictive value for patient clinical prognosis and response to immunotherapy.
Impact of bariatric surgery on cytochrome P 450 enzyme activity
Authors: Pham Anna , Chan Patrick , Mercado Angela , Wang Jeffrey , Wang Zhijun , Ibrahim Hajer , Gogineni Hyma , Huang Ying
Published: March 2024

Bariatric surgeries are becoming more prevalent as obesity rates continue to rise. Being that it is an effective weight-loss procedure, it can induce significant anatomical, physiological, and metabolic alterations, which affect the pharmacokinetics of various medications. Cytochrome (CYP) P450 is a group of enzymes that are primarily responsible for metabolizing most medications. Bariatric surgery may affect CYP activity and consequently alter metabolism of various medications, and the resulting weight loss may influence the metabolism of various drugs. This study investigates the impact of bariatric surgery on which CYP enzymes are affected and their effects medications. Authors of this study did an extensive literature review and research in databases including PubMed and EMBASE. The evidence was gathered for medication efficacy influenced by enzyme fluctuations to advocate for further studies for patients that undergo bariatric surgery. The search was limited to English-language results and is deemed up to date as of September 2023. There are numerous studies that indicated alterations of the CYP enzyme activity, which affects the pharmacokinetics of medications used to treat acute and chronic conditions after bariatric surgery. There are various mechanisms involved in CYP enzyme activity leading to fluctuations and the clearance of medications and subsequently compromising the efficacy and safety of these agents. It is imperative to conduct more prospective randomized control studies with longer duration to guide clinicians on how to manage medications with various CYP activity for patients’ post-bariatric surgery.
Genome-wide analysis of NPR1-like genes in citrus species and expression analysis in response to citrus canker (Xanthomonas axonopodis pv. citri)
Authors: Ali Mobeen , Shafiq Muhammad , Haider Muhammad Zeshan , Sami Adnan , Alam Pravej , Albalawi Thamir , Kamran Zuha , Sadiq Saleh , Hussain Mujahid , Shahid Muhammad Adnan , Jeridi Mouna , Ashraf Ghulam Abbas , Manzoor Muhammad Aamir , Sabir Irfan Ali
Published: March 2024

Citrus fruits, revered for their nutritional value, face significant threats from diseases like citrus canker, particularly impacting global citrus cultivation, notably in Pakistan. This study delves into the critical role of NPR1-like genes, the true receptors for salicylic acid (SA), in the defense mechanisms of citrus against Xanthomonas axonopodis pv. citri (Xcc). By conducting a comprehensive genome-wide analysis and phylogenetic study, the evolutionary dynamics of Citrus limon genes across diverse citrus cultivars are elucidated. Structural predictions unveil conserved domains, such as the BTB domain and ankyrin repeat domains, crucial for the defense mechanism. Motif analysis reveals essential conserved patterns, while cis-regulatory elements indicate their involvement in transcription, growth, response to phytohormones, and stress. The predominantly cytoplasmic and nuclear localization of NPR1-like genes underscores their pivotal role in conferring resistance to various citrus species. Analysis of the Ks/Ka ratio indicates a purifying selection of NPR1-like genes, emphasizing their importance in different species. Synteny and chromosomal mapping provide insights into duplication events and orthologous links among citrus species. Notably, Xac infection stimulates the expression of NPR1-like genes, revealing their responsiveness to pathogenic challenges. Interestingly, qRT-PCR profiling post-Xac infection reveals cultivar-specific alterations in expression within susceptible and resistant citrus varieties. Beyond genetic factors, physiological parameters like peroxidase, total soluble protein, and secondary metabolites respond to SA-dependent PR genes, influencing plant characteristics. Examining the impact of defense genes (NPR1) and plant characteristics on disease resistance in citrus, this study marks the inaugural investigation into the correlation between NPR1-associated genes and various plant traits in both susceptible and resistant citrus varieties to citrus bacterial canker.
Development and validation of the perceived restorative soundscape scale for children
Authors: Qin Jinhui , Zhao Xiaochen , He Jinlong , Jia Xiaohu , Zhang Bo
Published: March 2024

Introduction

Prolonged exposure to noise environments can induce stress and fatigue, even impacting individuals’ physical and mental health. Conversely, positive soundscapes can have a beneficial impact on health by alleviating stress and fatigue, promoting psychological recovery. To assess the restorative potential of soundscapes, various scales have been developed to create environments conducive to recovery. However, current research on perceptual restorativeness soundscape scales primarily focuses on adults, lacking a dedicated scale for children to evaluate the restorative potential of their surrounding acoustic environments from their perspective.

Methods

Therefore, this study introduces the development and validation process of the Perceived Restorativeness of Soundscapes Scale for Children (PRSS-C) using survey questionnaires and data statistical analysis.

Results

The study comprises two experiments. Experiment one aims to develop an effective PRSS-C, evaluating the restorative potential of soundscapes in different environments (urban center, urban suburb, and urban peripheral forest) among 185 children aged 10-12. Through a series of analyses, a dual-factor structure scale consisting of 15 items is developed, revealing that the restorative potential of soundscapes is lower in urban centers than in urban suburbs and lower in urban suburbs than in urban peripheral forests. Experiment two aims to further validate the effectiveness of PRSS-C. 244 children aged 10-12 assess the restorative potential of soundscapes in similar environments (two city parks) using the PRSS-C developed in experiment one. Factor analysis confirms the dual-factor structure, with assessment results indicating that the restorative potential of soundscapes in Temple of Heaven Park is lower than in the National Botanical Garden. This suggests that PRSS-C enables children to differentiate the restorative potential of soundscapes in similar environments within the same city, further confirming its effectiveness.

Discussion

This study successfully develops and validates the PRSS-C through two experiments. The use of this scale allows for the assessment of the restorative potential of acoustic environments surrounding children, providing an effective tool for evaluating and creating positive soundscapes for children.
Functional connectivity of the sensorimotor cerebellum in autism: associations with sensory over-responsivity
Authors: Cakar Melis E. , Okada Nana J. , Cummings Kaitlin K. , Jung Jiwon , Bookheimer Susan Y. , Dapretto Mirella , Green Shulamite A.
Published: March 2024

The cerebellum has been consistently shown to be atypical in autism spectrum disorder (ASD). However, despite its known role in sensorimotor function, there is limited research on its association with sensory over-responsivity (SOR), a common and impairing feature of ASD. Thus, this study sought to examine functional connectivity of the sensorimotor cerebellum in ASD compared to typically developing (TD) youth and investigate whether cerebellar connectivity is associated with SOR. Resting-state functional connectivity of the sensorimotor cerebellum was examined in 54 ASD and 43 TD youth aged 8-18 years. Using a seed-based approach, connectivity of each sensorimotor cerebellar region (defined as lobules I-IV, V-VI and VIIIA&B) with the whole brain was examined in ASD compared to TD youth, and correlated with parent-reported SOR severity. Across all participants, the sensorimotor cerebellum was functionally connected with sensorimotor and visual regions, though the three seed regions showed distinct connectivity with limbic and higher-order sensory regions. ASD youth showed differences in connectivity including atypical connectivity within the cerebellum and increased connectivity with hippocampus and thalamus compared to TD youth. More severe SOR was associated with stronger connectivity with cortical regions involved in sensory and motor processes and weaker connectivity with cognitive and socio-emotional regions, particularly prefrontal cortex. These results suggest that atypical cerebellum function in ASD may play a role in sensory challenges in autism.
Does nature-based social prescription improve mental health outcomes? A systematic review and meta-analysis
Authors: Menhas Rashid , Yang Lili , Saqib Zulkaif Ahmed , Younas Muhammad , Saeed Muhammad Muddasar
Published: March 2024

Background

A nature-based social prescription (NBSP) is an approach to improving mental health outcomes that involves prescribing nature-based interventions as complementary or alternative therapy to traditional ones. A variety of advantages are available from NBSP for people looking to enhance their mental well-being. The effect size of the nature-based social prescriptions (NBSPs) has not been thoroughly evaluated by systematic reviews and meta-analyses.

Objectives

The current study aimed to analyze existing studies and conduct a meta-analysis to determine the overall effect size of the nature-based social prescriptions (NBSP’s) outcomes on mental health.

Methods

By choosing the relevant papers from among those that were available, a meta-analysis was carried out in the current study. A systematic search of electronic databases (Pub Med, Web of Science, Scopus, Cochrane Library, Embase, CINAHL, and PsychINFO) was conducted to identify relevant studies. Studies were included if they evaluated the effects of NBSP on mental health outcomes. Effect sizes were calculated using the random effects model.

Results

Meta-analysis of interventions statistics shows that CBT (SMD −0.0035; 95% CI: [−0.5090; 0.5020]; Tau^2: 0.1011; Tau: 0.318), digital intervention (SMD −0.3654; 95% CI: [−0.5258; 1.2566]; Tau^2: 0.2976, Tau: 0.5455), music intervention (SMD −2.1281; 95% CI: [−0.4659; 4.7221]; Tau^2: 3.4046; Tau:1.8452), and psychological interventions (SMD −0.8529; 95% CI: [0.3051; 1.4007]; Tau^2: 0.1224; Tau: 0.3499) do not significantly impact. The other interventions [social belongingness, communication training, blue intervention, nature-based education, cognitive behavior group therapy (CBGT), social prescribing coordinator, self-help intervention, participatory, organizational intervention, inpatient services, brief diet, internet-based intervention, prenatal intervention, yoga and meditation, ergonomics training program, yoga nidra intervention, and storytelling] highlighted above are significant.

Conclusion

The conclusion of the meta-analysis supports the idea that incorporating nature-based social prescription interventions into mental healthcare plans can effectively complement traditional therapies and improve mental health outcomes.

Systematic review registration

https://www.crd.york.ac.uk/prospero/display_record.php?ID=CRD42023412458, CRD42023412458.
Embodied, visible, and courteous: exploring robotic social touch with virtual idols
Authors: Onishi Yuya , Ogawa Kosuke , Tanaka Kazuaki , Nakanishi Hideyuki
Published: March 2024

In recent years, virtual idols have garnered considerable attention because they can perform activities similar to real idols. However, as they are fictitious idols with nonphysical presence, they cannot perform physical interactions such as handshake. Combining a robotic hand with a display showing virtual idols is the one of the methods to solve this problem. Nonetheless a physical handshake is possible, the form of handshake that can effectively induce the desirable behavior is unclear. In this study, we adopted a robotic hand as an interface and aimed to imitate the behavior of real idols. To test the effects of this behavior, we conducted step-wise experiments. The series of experiments revealed that the handshake by the robotic hand increased the feeling of intimacy toward the virtual idol, and it became more enjoyable to respond to a request from the virtual idol. In addition, viewing the virtual idols during the handshake increased the feeling of intimacy with the virtual idol. Moreover, the method of the hand-shake peculiar to idols, which tried to keep holding the user’s hand after the conversation, increased the feeling of intimacy to the virtual idol.
Mathematical modeling of temperature-induced circadian rhythms
Authors: Lu Lingjun , Li Yannuo , Schloss Rene , Androulakis Ioannis P.
Published: March 2024

The central circadian pacemaker in the suprachiasmatic nuclei (SCN) aligns the phase and period of autonomous molecular oscillators in peripheral cells to daily light/dark cycles via physiological, neuronal, hormonal, and metabolic signals. Among different entrainment factors, temperature entrainment has been proposed as an essential alternative for inducing and sustaining circadian rhythms in vitro. While the synchronization mechanisms for hormones such as glucocorticoids have been widely studied, little is known about the crucial role of body temperature as a systemic cue. In this work, we develop a semi-mechanistic mathematical model describing the entrainment of peripheral clocks to temperature rhythms. The model incorporates a temperature sensing-transduction cascade involving a heat shock transcription factor-1 (HSF1) and heat shock response (HSR) pathway to simulate the entrainment of clock genes. The model is used to investigate the mammalian temperature entrainment and synchronization of cells subject to temperature oscillations of different amplitudes and magnitudes and examine the effects of transitioning between temperature schedules. Our computational analyses of the system’s dynamic responses reveal that 1) individual cells gradually synchronize to the rhythmic temperature signal by resetting their intrinsic phases to achieve coherent dynamics while oscillations are abolished in the absence of temperature rhythmicity; 2) alterations in the amplitude and period of temperature rhythms impact the peripheral synchronization behavior; 3) personalized synchronization strategies allow for differential, adaptive responses to temperature rhythms. Our results demonstrate that temperature can be a potent entrainer of circadian rhythms. Therefore, in vitro systems subjected to temperature modulation can serve as a potential tool for studying the adjustment or disruption of circadian rhythms.
Development of Novel Hydraulic 3D Printed Actuator Using Electrorheological Fluid for Robotic Endoscopy
Authors: Sadi Fabian , Holthausen Jan , Stallkamp Jan , Siegfarth Marius
Published: March 2024

Endoscopy has made a significant and noteworthy contribution to the field of medical science and technology. Nevertheless, its potential remains constrained due to the limited availability of rigid or flexible endoscopes. This paper introduces a novel hydraulic actuator based on electrorheological fluid (ERF) as a pivotal advancement in bridging the existing gap within the realm of endoscopy. Following a comprehensive introduction that briefly outlines the electrorheological effect, the subsequent section is dedicated to the elucidation of the actuator’s development process. Challenges arise, particularly in terms of miniaturization and the realization of a hydraulically sealed system with integrated valve electrodes. An internal electrorheological valve system consisting of four valves that are controlled using a pulse-width modulated high voltage was suitable for position control of the antagonistic hydraulic actuators. High-precision stereolithography (SLA) printing has proven practical for manufacturing actuator components. For functional testing, a test bench was set up in which the actuator follows a setpoint through a PI control loop. The control deviation ranged from 0.6 to 1 degree, with a response time between 6 and 8 s. The experiments have demonstrated that through the use of ERF and integrated valve electrodes, a miniaturized functional actuator can be constructed.
Analysis of Various Machine Learning Algorithms for Using Drone Images in Livestock Farms
Authors: Gao Jerry , Bambrah Charanjit Kaur , Parihar Nidhi , Kshirsagar Sharvaree , Mallarapu Sruthi , Yu Hailong , Wu Jane , Yang Yunyun
Published: March 2024

With the development of artificial intelligence, the intelligence of agriculture has become a trend. Intelligent monitoring of agricultural activities is an important part of it. However, due to difficulties in achieving a balance between quality and cost, the goal of improving the economic benefits of agricultural activities has not reached the expected level. Farm supervision requires intensive human effort and may not produce satisfactory results. In order to achieve intelligent monitoring of agricultural activities and improve economic benefits, this paper proposes a solution that combines unmanned aerial vehicles (UAVs) with deep learning models. The proposed solution aims to detect and classify objects using UAVs in the agricultural industry, thereby achieving independent agriculture without human intervention. To achieve this, a highly reliable target detection and tracking system is developed using Unmanned Aerial Vehicles. The use of deep learning methods allows the system to effectively solve the target detection and tracking problem. The model utilizes data collected from DJI Mirage 4 unmanned aerial vehicles to detect, track, and classify different types of targets. The performance evaluation of the proposed method shows promising results. By combining UAV technology and deep learning models, this paper provides a cost-effective solution for intelligent monitoring of agricultural activities. The proposed method offers the potential to improve the economic benefits of farming while reducing the need for intensive hum.
Integrating Biological Control Agents for Enhanced Management of Apple Scab (Venturia inaequalis): Insights, Risks, Challenges, and Prospects
Authors: Okoro Chisom Augusta , El-Hasan Abbas , Voegele Ralf T.
Published: March 2024

Apple scab incited by the ascomycete Venturia inaequalis poses a significant threat to apple cultivation, necessitating a reassessment of existing disease management strategies. Attempts to manage apple scab include diverse approaches like developing disease forecasting models and the extensive application of synthetic chemical fungicides. However, the efficacy of these methods is compromised by inconsistencies, environmental concerns, and the pathogen’s resistance, necessitating the exploration of alternative sustainable strategies. Addressing the challenges associated with apple scab management, this review strongly supports a shift towards the integration of biological control agents (BCAs). Emphasising the transformative synergy between BCAs and their bioactive secondary metabolites, we highlight their efficacy in advancing precision disease control through innovative and sustainable solutions. The review effectively presents a strong justification for the integration of BCAs and their by-products into apple scab management, offering insights into associated benefits, risks, and challenges while outlining promising prospects. Ultimately, it is expected to drive the adoption of environmentally conscious practices for effective apple scab management.
Distinguishing Abiotic from Biotic Stressors in Perennial Grain Crops: Nutrient Deficiency Symptoms in Silphium integrifolium and Thinopyrum intermedium
Authors: Brekalo Angela , Ravetta Damian , Thompson Yvonne , Turner M. Kathryn
Published: March 2024

Perennial grains have been proposed as a soil-healthy alternative to annual grains. Intermediate wheatgrass (Thinopyrum intermedium), whose seed is currently sold under the trade name Kernza®, and silflower (Silphium integrifolium), which is in the early stages of domestication at The Land Institute in Central Kansas, lack characterization for their deficiency symptoms. This has complicated attempts to assess the causes of visible stress on plants in the field and the greenhouse. By growing Th. intermedium and S. integrifolium in a set of hydroponic solutions, each containing all but one selected nutrient—including nitrogen, phosphorous, potassium, calcium, magnesium, sulfur, iron, boron, zinc, copper, molybdenum, and manganese—we were able to assess the effects of twelve different nutrient deficiencies across the two species. Visible symptoms were described and documented via photographs. The effects of the deficiencies on height, leaf biomass, root biomass, gas exchange and photosynthesis (silflower), and resin production (silflower) were measured. Calcium, nitrogen, and potassium were found to alter growth responses in intermediate wheatgrass; in silflower, growth, resin production, and photosynthetic traits were affected by many nutrient deficient treatments. Our results suggest that further work addressing how symptoms might look at the time of flowering, seed production, and in the field at different concentrations of key nutrients would help ongoing plant-breeding efforts.
Variation in Viral Tolerance of 21 Grapevine Rootstocks
Authors: Zhao Mei , Peng Lixia , Agüero Cecilia B. , Liu Gengsen , Zhang Yuefeng , Walker Andrew M. , Cui Zhenhua
Published: March 2024

Grapevine is one of the most economically important fruit crops cultivated worldwide. However, grapevine is highly susceptible to virus infections and exposed to the most diverse forms of viral diseases compared to other fruit crops, and virus-induced incompatibility affects plant growth to different degrees ranging from decline to death. The influence of virus-induced incompatibility could be mitigated to an acceptable level by using appropriate rootstocks. However, the viral tolerance of various grapevine rootstocks with diverse genetic backgrounds remains unclear, along with the identification of the specific viral tolerance factors. In this study, the viral tolerance of 21 grapevine rootstocks was evaluated in a green grafting system. Cabernet Franc varieties infected with a single virus [grapevine leafroll associated virus-1 (GLRaV-1)], a co-infection of two viruses (GLRaV-1 plus grapevine virus A—GVA), and no infection were used as the scions, respectively. The vegetative growth and photosynthetic function of the grafts were analyzed 4 months after grafting. The results indicated that some rootstocks could alleviate the influence of the virus infection, with vegetative growth and photosynthetic function sustained at a normal level, whereas other rootstocks were susceptible to the virus infection, resulting in a decline in the growth and photosynthetic function of the grafts. Our research provides evidence for the existence and diversity of viral tolerance among grapevine rootstocks, offering important information for appropriate rootstock selection in the establishment of new vineyards and in the breeding of grapevine rootstocks with enhanced viral tolerance.