bluuebunny/crossref_metadata_2025 huggingface dataset:
Supplementary Table 1 from Alcohol Consumption Promotes Diethylnitrosamine-Induced Hepatocarcinogenesis in Male Mice through Activation of the Wnt/β-Catenin Signaling Pathway
Authors: Mercer Kelly E. , Hennings Leah , Sharma Neha , Lai Keith , Cleves Mario A. , Wynne Rebecca A. , Badger Thomas M. , Ronis Martin J.J.
Published: April 2023

PDF file - 180K, List of primer sets used for RNA analysis in the manuscript.
Supplementary Table 1 from Lycopene Metabolite, Apo-10′-Lycopenoic Acid, Inhibits Diethylnitrosamine-Initiated, High Fat Diet–Promoted Hepatic Inflammation and Tumorigenesis in Mice
Authors: Ip Blanche C. , Hu Kang-Quan , Liu Chun , Smith Donald E. , Obin Martin S. , Ausman Lynne M. , Wang Xiang-Dong
Published: April 2023

PDF file - 30K, Supplementary Table S1. High-fat diet composition.
Supplementary Figure Legend from Lycopene Metabolite, Apo-10′-Lycopenoic Acid, Inhibits Diethylnitrosamine-Initiated, High Fat Diet–Promoted Hepatic Inflammation and Tumorigenesis in Mice
Authors: Ip Blanche C. , Hu Kang-Quan , Liu Chun , Smith Donald E. , Obin Martin S. , Ausman Lynne M. , Wang Xiang-Dong
Published: April 2023

PDF file - 54K
Supplementary Figure 2 from Lycopene Metabolite, Apo-10′-Lycopenoic Acid, Inhibits Diethylnitrosamine-Initiated, High Fat Diet–Promoted Hepatic Inflammation and Tumorigenesis in Mice
Authors: Ip Blanche C. , Hu Kang-Quan , Liu Chun , Smith Donald E. , Obin Martin S. , Ausman Lynne M. , Wang Xiang-Dong
Published: April 2023

PDF file - 61K, Supplementary Figure S2. Inhibition of carcinogen-initiated (DEN), HFD-promoted glucose intolerance by APO10LA. Glucose tolerance test was conducted on 6-8 mice/group and calculated for AUC.
Supplementary Table 1 from Breast Cancer Cell Apoptosis with Phytoestrogens Is Dependent on an Estrogen-Deprived State
Authors: Obiorah Ifeyinwa E. , Fan Ping , Jordan V. Craig
Published: April 2023

PDF file - 65K, The sequence of the primers used in the study.
Supplementary Table 6 from A DRD1 Polymorphism Predisposes to Lung Cancer among Those Exposed to Secondhand Smoke during Childhood
Authors: Robles Ana I. , Yang Ping , Jen Jin , McClary Andrew C. , Calhoun Kara , Bowman Elise D. , Vähäkangas Kirsi , Greathouse K. Leigh , Wang Yi , Olivo-Marston Susan , Wenzlaff Angela S. , Deng Bo , Schwartz Ann G. , Ryan Bríd M.
Published: April 2023

Association between rs4809294 and rs2292975 and lung cancer risk stratified by exposure to secondhand smoke during adulthood in the NCI-MD Cohort (European Americans).
Supplementary Table 2 from A DRD1 Polymorphism Predisposes to Lung Cancer among Those Exposed to Secondhand Smoke during Childhood
Authors: Robles Ana I. , Yang Ping , Jen Jin , McClary Andrew C. , Calhoun Kara , Bowman Elise D. , Vähäkangas Kirsi , Greathouse K. Leigh , Wang Yi , Olivo-Marston Susan , Wenzlaff Angela S. , Deng Bo , Schwartz Ann G. , Ryan Bríd M.
Published: April 2023

SNP Selection.
Supplementary Table 1 from A DRD1 Polymorphism Predisposes to Lung Cancer among Those Exposed to Secondhand Smoke during Childhood
Authors: Robles Ana I. , Yang Ping , Jen Jin , McClary Andrew C. , Calhoun Kara , Bowman Elise D. , Vähäkangas Kirsi , Greathouse K. Leigh , Wang Yi , Olivo-Marston Susan , Wenzlaff Angela S. , Deng Bo , Schwartz Ann G. , Ryan Bríd M.
Published: April 2023

Characteristics of cases and controls from three studies combined.
Supplementary Figure Legends from Class I HDACs Are Mediators of Smoke Carcinogen–Induced Stabilization of DNMT1 and Serve as Promising Targets for Chemoprevention of Lung Cancer
Authors: Brodie Seth A. , Li Ge , El-Kommos Adam , Kang Hyunseok , Ramalingam Suresh S. , Behera Madhusmita , Gandhi Khanjan , Kowalski Jeanne , Sica Gabriel L. , Khuri Fadlo R. , Vertino Paula M. , Brandes Johann C.
Published: April 2023

PDF file - 41K
Supplementary Figure S1 from Loss of Inositol Polyphosphate 5-Phosphatase Is an Early Event in Development of Cutaneous Squamous Cell Carcinoma
Authors: Sekulic Aleksandar , Kim Su Y. , Hostetter Galen , Savage Stephanie , Einspahr Janine G. , Prasad Anil , Sagerman Paul , Curiel-Lewandrowski Clara , Krouse Robert , Bowden G. Timothy , Warneke James , Alberts David S. , Pittelkow Mark R. , DiCaudo David , Nickoloff Brian J. , Trent Jeffrey M. , Bittner Michael
Published: April 2023

Supplementary Figure S1 from Loss of Inositol Polyphosphate 5-Phosphatase Is an Early Event in Development of Cutaneous Squamous Cell Carcinoma
Supplementary Data from Heme Iron from Meat and Risk of Colorectal Cancer: A Meta-analysis and a Review of the Mechanisms Involved
Authors: Bastide Nadia M. , Pierre Fabrice H.F. , Corpet Denis E.
Published: April 2023

Supplementary Methods, Table, and Figure
Supplementary Figures 1 - 3 from Widefield Optical Imaging of Changes in Uptake of Glucose and Tissue Extracellular pH in Head and Neck Cancer
Authors: Luo Zhen , Loja Melissa N. , Farwell D. Greg , Luu Quang C. , Donald Paul J. , Amott Deborah , Truong Anh Q. , Gandour-Edwards Regina , Nitin Nitin
Published: April 2023

Figure S1: Average MFI across all cancer and normal biopsy samples before (pre-contrast) and after (post-contrast) topical delivery with 2-NBDG (Black) and Alexa 647-pHLIP (White) Validating uniformity of illumination field. Figure S2: Validating uniformity of the illumination field using the widefield imaging system. (A) Shows the locations at which the model phantom was imaged using the widefield imaging system. (B) Quantification of the mean fluorescence intensity to characterize uniformity of the illumination field Representative images illustrating selection of the region of interest for quantification of the mean fluorescence intensity. Figure S3: Representative images showing the boundaries of the region of interest (ROI) for quantification of the mean fluorescence intensity using the fluorescence imaging data.
Supplementary Figure 4 from Licochalcone A, a Natural Inhibitor of c-Jun N-Terminal Kinase 1
Authors: Yao Ke , Chen Hanyong , Lee Mee-Hyun , Li Haitao , Ma Weiya , Peng Cong , Song Nu Ry , Lee Ki Won , Bode Ann M. , Dong Ziming , Dong Zigang
Published: April 2023

PDF file 126K, Figure S4. Licochalcone A suppresses breast and liver cancer cell proliferation and colony formation mediated through JNK1. (A) Licochalcone A suppresses SK-BR-3 breast cancer and HepG2 liver cancer cell proliferation. SK-BR-3 or HepG2 cells (1 x 103) cells were seeded, cultured overnight, and then treated with different doses of lichochalcone A and proliferation was measured by MTS assay at the indicated time point to assess time- and dose-dependent effects. (B) Licochalcone A suppresses SK-BR-3 breast cancer and HepG2 liver cancer cell anchorage-independent growth. SK-BR-3 or HepG2 cells (8 x 103/mL) were exposed to different doses of lichochalcone A in 1 mL of 0.3% BME agar containing 10% FBS. Each dose was repeated in triplicate wells. The cultures were maintained in a 37{degree sign}C, 5% CO2 incubator for 10 d and then colonies were counted using a microscope and the Image-Pro PLUS (vs. 4) computer software program. (D) JNK1 knockdown in SK-BR-3 breast cancer and HepG2 liver cancer cells suppresses anchorage-independent growth. SK-BR-3 or HepG2 cells stably expressing sh-mock or sh-JNK1 were examined for colony growth under anchorage-independent conditions. Cells (8 � 103/mL) were mixed in 1 mL of 0.3% BME agar containing 10% FBS. The cultures were maintained in a 37{degree sign}C, 5% CO2 incubator for 10 d and then colonies were counted using a microscope and the Image-Pro PLUS (vs. 4) computer software program. For A-C, data are shown as mean values plus-minus S.D. obtained from triplicate experiments. Significant differences were evaluated using factorial ANOVA (Scheffe post hoc) analysis and the asterisks indicate a significant effect (*, p < 0.01)
Supplementary Figure 2 from Licochalcone A, a Natural Inhibitor of c-Jun N-Terminal Kinase 1
Authors: Yao Ke , Chen Hanyong , Lee Mee-Hyun , Li Haitao , Ma Weiya , Peng Cong , Song Nu Ry , Lee Ki Won , Bode Ann M. , Dong Ziming , Dong Zigang
Published: April 2023

PDF file 95K, Figure S2. Licochalcone A (surface representation) binds at the JIP1 binding pocket of JNK1 (A) or JNK2 (B). Enlarged view (right) of licochalcone A binding with JNK1 (A) or JNK2 (B) at the JIP1 binding pocket and hydrogen bonds formed are shown as red lines
Supplementary Table 2 from Energy Balance Modulates Mouse Skin Tumor Promotion through Altered IGF-1R and EGFR Crosstalk
Authors: Moore Tricia , Beltran Linda , Carbajal Steve , Hursting Stephen D. , DiGiovanni John
Published: April 2023

PDF file - 96K, Effect of Dietary Energy Balance on Body Mass and Serum Protein Levels
Supplementary Figure-8 from Novel Evidence for Curcumin and Boswellic Acid–Induced Chemoprevention through Regulation of miR-34a and miR-27a in Colorectal Cancer
Authors: Toden Shusuke , Okugawa Yoshinaga , Buhrmann Constanze , Nattamai Durgha , Anguiano Esperanza , Baldwin Nicole , Shakibaei Mehdi , Boland C. Richard , Goel Ajay
Published: April 2023

Supplementary Figure-8. Comparative gene-expression analysis of FBXW7, cMyc, CDK4, CDK6, Cyclin E1 and Cyclin D1 from xenograft tumors assessed by qRT-PCR.
Related Article from Biomarkers in Exploring the Frontiers of Diagnosis, Prognosis, and Therapy of Barrett's Esophagus
Authors: Yachimski Patrick , Peek Richard M.
Published: April 2023

Related Article from Biomarkers in Exploring the Frontiers of Diagnosis, Prognosis, and Therapy of Barrett's Esophagus
Supplementary Appendix from A Randomized Pilot Trial of Dietary Modification for the Chemoprevention of Noninvasive Bladder Cancer: The Dietary Intervention in Bladder Cancer Study
Authors: Parsons J. Kellogg , Pierce John P. , Natarajan Loki , Newman Vicky A. , Barbier Leslie , Mohler James , Rock Cheryl L. , Heath Dennis D. , Guru Khurshid , Jameson Michael B. , Li Hongying , Mirheydar Hossein , Holmes Michael A. , Marshall James
Published: April 2023

PDF - 94K, Detailed mixed models analysis of self-reported and biomarker data.
Supplementary Figure-3 from Novel Evidence for Curcumin and Boswellic Acid–Induced Chemoprevention through Regulation of miR-34a and miR-27a in Colorectal Cancer
Authors: Toden Shusuke , Okugawa Yoshinaga , Buhrmann Constanze , Nattamai Durgha , Anguiano Esperanza , Baldwin Nicole , Shakibaei Mehdi , Boland C. Richard , Goel Ajay
Published: April 2023

Supplementary Figure-3. Curcumin and AKBA inhibit cellular proliferation in 3D cultures.
Supplementary Figure 3 from DACT2 Is a Candidate Tumor Suppressor and Prognostic Marker in Esophageal Squamous Cell Carcinoma
Authors: Hou Jian , Liao Lian-Di , Xie Yang-Min , Zeng Fa-Min , Ji Xia , Chen Bo , Li Li-Yan , Zhu Meng-Xiao , Yang Cui-Xia , Chen Tao , Xu Xiu-E , Shen Jian , Guo Ming-Zhou , Li En-Min , Xu Li-Yan
Published: April 2023

PDF file - 66K, Response of TopFlash/FOPflash reporter to DACT2.
Supplementary Figure S2 from Genomic Profiling of Human Penile Carcinoma Predicts Worse Prognosis and Survival
Authors: Busso-Lopes Ariane F. , Marchi Fábio A. , Kuasne Hellen , Scapulatempo-Neto Cristovam , Trindade-Filho José Carlos S. , de Jesus Carlos Márcio N. , Lopes Ademar , Guimarães Gustavo C. , Rogatto Silvia R.
Published: April 2023

Supplementary Figure S2. Genomic regions of PPARG and DLC1 genes associated with prognosis.
Supplementary Figure S1 from Genomic Profiling of Human Penile Carcinoma Predicts Worse Prognosis and Survival
Authors: Busso-Lopes Ariane F. , Marchi Fábio A. , Kuasne Hellen , Scapulatempo-Neto Cristovam , Trindade-Filho José Carlos S. , de Jesus Carlos Márcio N. , Lopes Ademar , Guimarães Gustavo C. , Rogatto Silvia R.
Published: April 2023

Supplementary Figure S1. Quantitative gene expression evaluation for chromosome 3 and 8 genes.
Supplementary Figure Legends 1A-B from Dietary Energy Balance Modulates Prostate Cancer Progression in Hi-Myc Mice
Authors: Blando Jorge , Moore Tricia , Hursting Stephen , Jiang Guiyu , Saha Achinto , Beltran Linda , Shen Jianjun , Repass John , Strom Sara , DiGiovanni John
Published: April 2023

PDF file - 81K
Related Article from Hunting for the Causes of Meningioma—Obesity Is a Suspect
Authors: Rajaraman Preetha
Published: April 2023

Related Article from Hunting for the Causes of Meningioma—Obesity Is a Suspect
Supplementary Tables S1-3 from Dietary Patterns after Prostate Cancer Diagnosis in Relation to Disease-Specific and Total Mortality
Authors: Yang Meng , Kenfield Stacey A. , Van Blarigan Erin L. , Batista Julie L. , Sesso Howard D. , Ma Jing , Stampfer Meir J. , Chavarro Jorge E.
Published: April 2023

Supplemental Table S1. Food groupings used in the dietary pattern analysis. Supplemental Table S2. Comparisons of Cox proportional hazards regression model and competing risk model in associations between dietary patterns and prostate cancer-specific mortality among 926 men diagnosed with non-metastatic prostate cancer Supplemental Table S3. Relative risks between food groups with loading factor > 0.3 within each dietary pattern and prostate cancer-specific and all-cause mortality among men with non-metastatic prostate cancer (n=926)a.
Supplementary Table 3 from The Parity-Associated Microenvironmental Niche in the Omental Fat Band Is Refractory to Ovarian Cancer Metastasis
Authors: Cohen Courtney A. , Shea Amanda A. , Heffron C. Lynn , Schmelz Eva M. , Roberts Paul C.
Published: April 2023

PDF file - 99K, Supplementary Table S3. Fold gene expression in the OFB as a result of age or parity. Normalized gene expression (to L19) is expressed as fold gene expression change compared young adult nulliparous mice (yNP). Mature adult nulliparous mice (aNP); mature adult parous mice (aP). *: p<0.05 **: p<0.01 ^: p=0.08-0.05
Supplementary Figure 2 from Eflornithine (DFMO) Prevents Progression of Pancreatic Cancer by Modulating Ornithine Decarboxylase Signaling
Authors: Mohammed Altaf , Janakiram Naveena B. , Madka Venkateshwar , Ritchie Rebekah L. , Brewer Misty , Biddick Laura , Patlolla Jagan Mohan R. , Sadeghi Michael , Lightfoot Stan , Steele Vernon E. , Rao Chinthalapally V.
Published: April 2023

Supplementary Figure 2. Western Immunoblotting for c-Myc, p21 and ODC in MiaPaCa cells
Related Articles from Challenges Related to Developing Serum-Based Biomarkers for Early Ovarian Cancer Detection
Authors: Mai Phuong L. , Wentzensen Nicolas , Greene Mark H.
Published: April 2023

Related Articles from Challenges Related to Developing Serum-Based Biomarkers for Early Ovarian Cancer Detection
Perspective on this Article from Lung Cancer Inhibitory Effect of Epigallocatechin-3-Gallate Is Dependent on Its Presence in a Complex Mixture (Polyphenon E)
Authors: Fu Huijing , He Jun , Mei Fan , Zhang Qi , Hara Yukihiko , Ryota Seto , Lubet Ronald A. , Chen Ruth , Chen Da-Ren , You Ming
Published: April 2023

Perspective on this Article from Lung Cancer Inhibitory Effect of Epigallocatechin-3-Gallate Is Dependent on Its Presence in a Complex Mixture (Polyphenon E)
Supplementary Figure 4 from Divergent Roles of PAX2 in the Etiology and Progression of Ovarian Cancer
Authors: Al-Hujaily Ensaf M. , Tang Yong , Yao De-Sheng , Carmona Euridice , Garson Kenneth , Vanderhyden Barbara C.
Published: April 2023

Western blot analysis showing there is no T-antigen expression in RM tumors.
Supplementary Tables 1 & 2 from Leukoplakia, Oral Cavity Cancer Risk, and Cancer Survival in the U.S. Elderly
Authors: Yanik Elizabeth L. , Katki Hormuzd A. , Silverberg Michael J. , Manos M. Michele , Engels Eric A. , Chaturvedi Anil K.
Published: April 2023

Supplementary Tables 1 & 2. Table 1: Comparison of American Joint Committee on Cancer (AJCC) stage to SEER historic stage within the SEER database. Table 2: Primary treatment for oral cavity cancer cases.
Perspective on This Article from Frequency of Rearrangements in Lynch Syndrome Cases Associated with MSH2: Characterization of a New Deletion Involving both EPCAM and the 5′ Part of MSH2
Authors: Pérez-Cabornero Lucia , Sanz Mar Infante , Sampedro Eladio Velasco , Aras Enrique Lastra , Becares Alberto Acedo , Pino Cristina Miner , Domínguez Mercedes Durán
Published: April 2023

Perspective on This Article from Frequency of Rearrangements in Lynch Syndrome Cases Associated with MSH2: Characterization of a New Deletion Involving both EPCAM and the 5′ Part of MSH2
Supplemental Table S4 from Metabolomic Markers of Altered Nucleotide Metabolism in Early Stage Adenocarcinoma
Authors: Wikoff William R. , Grapov Dmitry , Fahrmann Johannes F. , DeFelice Brian , Rom William N. , Pass Harvey I. , Kim Kyoungmi , Nguyen UyenThao , Taylor Sandra L. , Gandara David R. , Kelly Karen , Fiehn Oliver , Miyamoto Suzanne
Published: April 2023

Supplemental Table S4. Table of measured metabolite metadata, O-PLS-DA loadings for latent variable 1 and proportion of cancer specific increases in paired tissue comparisons.
Figure S2 from Metabolomic Markers of Altered Nucleotide Metabolism in Early Stage Adenocarcinoma
Authors: Wikoff William R. , Grapov Dmitry , Fahrmann Johannes F. , DeFelice Brian , Rom William N. , Pass Harvey I. , Kim Kyoungmi , Nguyen UyenThao , Taylor Sandra L. , Gandara David R. , Kelly Karen , Fiehn Oliver , Miyamoto Suzanne
Published: April 2023

Figure S2. Boxplots for each metabolite comparing the relative intensities of the quantified ion in tumor and control tissues.
Supplementary Figure 9 from Targeted DNA Methylation Screen in the Mouse Mammary Genome Reveals a Parity-Induced Hypermethylation of Igf1r That Persists Long after Parturition
Authors: Katz Tiffany A. , Liao Serena G. , Palmieri Vincent J. , Dearth Robert K. , Pathiraja Thushangi N. , Huo Zhiguang , Shaw Patricia , Small Sarah , Davidson Nancy E. , Peters David G. , Tseng George C. , Oesterreich Steffi , Lee Adrian V.
Published: April 2023

Supplemental Fig S9. Differentially methylated regions of IGF pathway genes align with histone methylation sites. The UCSC Genome Browser was used to align the Irs1, Igf1, and Igfbp4 with other epigenetic modifications. The red bars indicate the regions of differential DNA methylation identified in the SureSelectXT Methyl-Seq Assay. Black bars represent sites of histone methylation, the intensity corresponds to the degree of methylation.
Supplementary Figure 7 from Targeted DNA Methylation Screen in the Mouse Mammary Genome Reveals a Parity-Induced Hypermethylation of Igf1r That Persists Long after Parturition
Authors: Katz Tiffany A. , Liao Serena G. , Palmieri Vincent J. , Dearth Robert K. , Pathiraja Thushangi N. , Huo Zhiguang , Shaw Patricia , Small Sarah , Davidson Nancy E. , Peters David G. , Tseng George C. , Oesterreich Steffi , Lee Adrian V.
Published: April 2023

Supplemental Fig S7. Igf1r is central to a top signaling network in Ingenuity pathway analysis. Ingenuity pathway analysis (IPA) identified this signaling network to be significantly altered by DNA methylation. The hyper and hypomethylated genes identified to be persistently differentially methylated by the meta-analysis were input into IPA (Supplemental Data 1). Red symbols represent hypermethylation, green symbols represent hypomethylation and intensity depicts methylation difference between nulliparous and parous.
Supplementary Figure 5 from Targeted DNA Methylation Screen in the Mouse Mammary Genome Reveals a Parity-Induced Hypermethylation of Igf1r That Persists Long after Parturition
Authors: Katz Tiffany A. , Liao Serena G. , Palmieri Vincent J. , Dearth Robert K. , Pathiraja Thushangi N. , Huo Zhiguang , Shaw Patricia , Small Sarah , Davidson Nancy E. , Peters David G. , Tseng George C. , Oesterreich Steffi , Lee Adrian V.
Published: April 2023

Supplemental Fig S5. Imprinted genes display approximately 50% DNA methylation. Gene regions known to be imprinted were chosen to confirm the validity of the Methyl-Seq assay. For each gene a β value was calculated for each window. The frequency of each particular β value is graphically represented for each gene.
Supplementary Figure 2 from Targeted DNA Methylation Screen in the Mouse Mammary Genome Reveals a Parity-Induced Hypermethylation of Igf1r That Persists Long after Parturition
Authors: Katz Tiffany A. , Liao Serena G. , Palmieri Vincent J. , Dearth Robert K. , Pathiraja Thushangi N. , Huo Zhiguang , Shaw Patricia , Small Sarah , Davidson Nancy E. , Peters David G. , Tseng George C. , Oesterreich Steffi , Lee Adrian V.
Published: April 2023

Supplemental Figure S2. All samples from both time points were used in a hierarchal clustering analysis. 10 samples at the early time point and 11 samples at the late time point were included.(E=early, L=late, P=parous, NP=nulliparous)
Supplementary Data 1 from Targeted DNA Methylation Screen in the Mouse Mammary Genome Reveals a Parity-Induced Hypermethylation of Igf1r That Persists Long after Parturition
Authors: Katz Tiffany A. , Liao Serena G. , Palmieri Vincent J. , Dearth Robert K. , Pathiraja Thushangi N. , Huo Zhiguang , Shaw Patricia , Small Sarah , Davidson Nancy E. , Peters David G. , Tseng George C. , Oesterreich Steffi , Lee Adrian V.
Published: April 2023

Supplemental Data 1. This spreadsheet contains the results of the differential methylation analysis, the meta-analysis and the pathway analysis. In the meta-analysis sheets, the first 3 columns represent the chromosomal locations, followed by the significance level (stat, p-value, and FDR). Weight.1 and weight.2 represent the weight of early and late data respectively. For the meta-analysis we weighted both as 1. The effect size represents the difference in DNA methylation between NP and P at the early and late time points (effect size.1=early, effect size.2=late), and the p-value for each is next depicted. We then filtered the data by trimmed means as in the Materials and Methods section and the new values are listed in columns N and O. We then annotated the gene name, which genomic feature the loci resides in, and the distance to the nearest promoter (distance to feature). We then annotated the mean coverage and the number of CpG sites in the differentially methylated region. The differential methylation sheets include similar data without the columns pertaining to the meta-analysis. The 3Ingenuity Pathway Analysis (IPA) spreadsheets contain the pathway analysis result. The pathway name, followed by the statistical significance, and molecules represented in our data for each pathway are detailed on each sheet. The analysis was first conducted on the hyper and hypomethylated genes separately, then the combined hyper and hypermethylated genes were analyzed together.
Supplementary Table 2 from Curcumin Modulates MicroRNA-203–Mediated Regulation of the Src-Akt Axis in Bladder Cancer
Authors: Saini Sharanjot , Arora Sumit , Majid Shahana , Shahryari Varahram , Chen Yi , Deng Guoren , Yamamura Soichiro , Ueno Koji , Dahiya Rajvir
Published: April 2023

PDF file - 60K
Supplementary Figure 3 from Curcumin Modulates MicroRNA-203–Mediated Regulation of the Src-Akt Axis in Bladder Cancer
Authors: Saini Sharanjot , Arora Sumit , Majid Shahana , Shahryari Varahram , Chen Yi , Deng Guoren , Yamamura Soichiro , Ueno Koji , Dahiya Rajvir
Published: April 2023

PDF file - 425K, MS-PCR analysis of miR-203 promoter methylation in T24 cell line following treatment with epigenetic drugs.
Supplement Table 1 from Chemopreventive Effects of Korean Angelica versus Its Major Pyranocoumarins on Two Lineages of Transgenic Adenocarcinoma of Mouse Prostate Carcinogenesis
Authors: Tang Su-Ni , Zhang Jinhui , Wu Wei , Jiang Peixin , Puppala Manohar , Zhang Yong , Xing Chengguo , Kim Sung-Hoon , Jiang Cheng , Lü Junxuan
Published: April 2023

qRT-PCR primer sequences.
Supplement Figure S1 from Chemopreventive Effects of Korean Angelica versus Its Major Pyranocoumarins on Two Lineages of Transgenic Adenocarcinoma of Mouse Prostate Carcinogenesis
Authors: Tang Su-Ni , Zhang Jinhui , Wu Wei , Jiang Peixin , Puppala Manohar , Zhang Yong , Xing Chengguo , Kim Sung-Hoon , Jiang Cheng , Lü Junxuan
Published: April 2023

Hematoxylin and eosin (H&E) and immuno-histochemical characterization of epithelial lesions, NE-Ca and metastatic lymph nodes.
Supplementary Methods from Assessment of Esophageal Adenocarcinoma Risk Using Somatic Chromosome Alterations in Longitudinal Samples in Barrett's Esophagus
Authors: Li Xiaohong , Paulson Thomas G. , Galipeau Patricia C. , Sanchez Carissa A. , Liu Karen , Kuhner Mary K. , Maley Carlo C. , Self Steven G. , Vaughan Thomas L. , Reid Brian J. , Blount Patricia L.
Published: April 2023

Supplementary Methods from Assessment of Esophageal Adenocarcinoma Risk Using Somatic Chromosome Alterations in Longitudinal Samples in Barrett's Esophagus
Supplementary Figure S4 from Assessment of Esophageal Adenocarcinoma Risk Using Somatic Chromosome Alterations in Longitudinal Samples in Barrett's Esophagus
Authors: Li Xiaohong , Paulson Thomas G. , Galipeau Patricia C. , Sanchez Carissa A. , Liu Karen , Kuhner Mary K. , Maley Carlo C. , Self Steven G. , Vaughan Thomas L. , Reid Brian J. , Blount Patricia L.
Published: April 2023

ROC for combined T1+T2 data. The model was trained by repeatedly using a randomly drawn 2/3 of the combined T1+T2 data for training, and testing on the reserved 1/3 of the data. The average AUC of 10,000 ROC from the reserved test data is AUC=0.86.
Supplemental Figure 2 from Notch1 Mutations Are Drivers of Oral Tumorigenesis
Authors: Izumchenko Evgeny , Sun Kai , Jones Sian , Brait Mariana , Agrawal Nishant , Koch Wayne , McCord Christine L. , Riley David R. , Angiuoli Samuel V. , Velculescu Victor E. , Jiang Wei-Wen , Sidransky David
Published: April 2023

Supplemental Figure 2. List of all NOTCH1 mutations identified in Chinese patients with oral leukoplakia.
Supplemental Figure 1 from Notch1 Mutations Are Drivers of Oral Tumorigenesis
Authors: Izumchenko Evgeny , Sun Kai , Jones Sian , Brait Mariana , Agrawal Nishant , Koch Wayne , McCord Christine L. , Riley David R. , Angiuoli Samuel V. , Velculescu Victor E. , Jiang Wei-Wen , Sidransky David
Published: April 2023

Supplemental Figure 1. List of all NOTCH1 mutations found in Chinese OSCC patients. A. Mutations identified in 22 tumor-normal pairs. B. Mutations found in 28 OSCC samples without matching normal control.
Supplementary Figure S6 from St. John's Wort Attenuates Colorectal Carcinogenesis in Mice through Suppression of Inflammatory Signaling
Authors: Manna Soumen K. , Golla Srujana , Golla Jaya Prakash , Tanaka Naoki , Cai Yan , Takahashi Shogo , Krausz Kristopher W. , Matsubara Tsutomu , Korboukh Ilia , Gonzalez Frank J.
Published: April 2023

Supplementary Figure S6: Extracted and integrated ion chromatograms for quercetin showing the relative abundance (area under the curve of the highlighted peak) do not diminish upon storage of the diet at 4{degree sign}C.
Supplementary Figure S4 from St. John's Wort Attenuates Colorectal Carcinogenesis in Mice through Suppression of Inflammatory Signaling
Authors: Manna Soumen K. , Golla Srujana , Golla Jaya Prakash , Tanaka Naoki , Cai Yan , Takahashi Shogo , Krausz Kristopher W. , Matsubara Tsutomu , Korboukh Ilia , Gonzalez Frank J.
Published: April 2023

Supplementary Figure S4: Extracted and integrated ion chromatograms for hyperforin showing the relative abundance (area under the curve of the highlighted peak) do not diminish upon storage of the diet at 4{degree sign}C.
Supplemental Figure from Effect of Sulforaphane in Men with Biochemical Recurrence after Radical Prostatectomy
Authors: Cipolla Bernard G. , Mandron Eric , Lefort Jean Marc , Coadou Yves , Della Negra Emmanuel , Corbel Luc , Le Scodan Ronan , Azzouzi Abdel Rahmene , Mottet Nicolas
Published: April 2023

Supplemental Figure. Consort diagram highlighting the flow of patients throughout the study
Supplementary Table 1 from Effect of Low-Fat Diets on Plasma Levels of NF-κB–Regulated Inflammatory Cytokines and Angiogenic Factors in Men with Prostate Cancer
Authors: Heymach John V. , Shackleford Terry J. , Tran Hai T. , Yoo Suk-Young , Do Kim-Anh , Wergin Melanie , Saintigny Pierre , Vollmer Robin T. , Polascik Thomas J. , Snyder Denise C. , Ruffin Mack T. , Yan Shaoyu , Dewhirst Mark , Kunnumakkara Ajaikumar B. , Aggarwal Bharat B. , Demark-Wahnefried Wendy
Published: April 2023

PDF file - 146K
Fig S2 from Loss of BRCA1 in the Cells of Origin of Ovarian Cancer Induces Glycolysis: A Window of Opportunity for Ovarian Cancer Chemoprevention
Authors: Chiyoda Tatsuyuki , Hart Peter C. , Eckert Mark A. , McGregor Stephanie M. , Lastra Ricardo R. , Hamamoto Ryuji , Nakamura Yusuke , Yamada S. Diane , Olopade Olufunmilayo I. , Lengyel Ernst , Romero Iris L.
Published: April 2023

Fig S2 shows electron flux analysis of BRCA1 knockdown in IOSE cells shows elevated glycolysis.
Supplementary figure legends from Fixed-Dose Combinations of Pioglitazone and Metformin for Lung Cancer Prevention
Authors: Seabloom Donna E. , Galbraith Arthur R. , Haynes Anna M. , Antonides Jennifer D. , Wuertz Beverly R. , Miller Wendy A. , Miller Kimberly A. , Steele Vernon E. , Miller Mark Steven , Clapper Margie L. , O'Sullivan M. Gerard , Ondrey Frank G.
Published: April 2023

Supplementary figure legends
Supplementary Table 1 from Fixed-Dose Combinations of Pioglitazone and Metformin for Lung Cancer Prevention
Authors: Seabloom Donna E. , Galbraith Arthur R. , Haynes Anna M. , Antonides Jennifer D. , Wuertz Beverly R. , Miller Wendy A. , Miller Kimberly A. , Steele Vernon E. , Miller Mark Steven , Clapper Margie L. , O'Sullivan M. Gerard , Ondrey Frank G.
Published: April 2023

Experimental Group Diet Additions, Treatment Duration and Group Size Microsoft Word Version
Supplementary Figures 1-7 from Unlocking Aspirin's Chemopreventive Activity: Role of Irreversibly Inhibiting Platelet Cyclooxygenase-1
Authors: Lichtenberger Lenard M. , Fang Dexing , Bick Roger J. , Poindexter Brian J. , Phan Tri , Bergeron Angela L. , Pradhan Subhashree , Dial Elizabeth J. , Vijayan K. Vinod
Published: April 2023

Figure S1. Aspirin and Aspirin-PC does not block the release of TGF from platelets following co-culture with colon cancer cells. Figure S2. Aspirin and Aspirin-PC block platelet induced upregulation of the EMT marker SNAIL in MC-26 cells. Figure S3. Aspirin and Aspirin-PC decrease collagen-induced activation of platelets obtained from the AOM/DSS cancer model. Figure S4. Time course of aspirin (ASA) test drugs on body weight in AOM/DSS mouse colon cancer model. Figure S5. Aspirin and Aspirin-PC do not alter changes in body weight induced by AOM/DSS. Figure S6. Effect of aspirin (ASA) test drugs on fecal hemoglobin in AOM/DSS mouse cancer model. Figure S7. Effect of aspirin (ASA) test drugs on hematocrit in AOM/DSS mouse cancer model.
Supplementary Table 2 from JAK3 Variant, Immune Signatures, DNA Methylation, and Social Determinants Linked to Survival Racial Disparities in Head and Neck Cancer Patients
Authors: Guerrero-Preston Rafael , Lawson Fahcina , Rodriguez-Torres Sebastian , Noordhuis Maartje G. , Pirini Francesca , Manuel Laura , Valle Blanca L. , Hadar Tal , Rivera Bianca , Folawiyo Oluwasina , Baez Adriana , Marchionni Luigi , Koch Wayne M. , Westra William H. , Kim Young J. , Eshleman James R. , Sidransky David
Published: April 2023

Mutational profile in Black HNSCC patients by anatomic site
Supplemental Experimental Procedures from JAK3 Variant, Immune Signatures, DNA Methylation, and Social Determinants Linked to Survival Racial Disparities in Head and Neck Cancer Patients
Authors: Guerrero-Preston Rafael , Lawson Fahcina , Rodriguez-Torres Sebastian , Noordhuis Maartje G. , Pirini Francesca , Manuel Laura , Valle Blanca L. , Hadar Tal , Rivera Bianca , Folawiyo Oluwasina , Baez Adriana , Marchionni Luigi , Koch Wayne M. , Westra William H. , Kim Young J. , Eshleman James R. , Sidransky David
Published: April 2023

Supplemental Methods, Figures and Tables
Table S1 from Alcohol-metabolizing Enzymes' Gene Polymorphisms and Susceptibility to Multiple Head and Neck Cancers
Authors: Chien Huei-Tzu , Young Chi-Kuang , Chen Tzu-Ping , Liao Chun-Ta , Wang Hung-Ming , Cheng Sou-De , Huang Shiang-Fu
Published: April 2023

Association between alcohol metabolizing enzymes SNPs and risk of HNCs.
Supplemental Figure 3 from β-Carotene 9′,10′ Oxygenase Modulates the Anticancer Activity of Dietary Tomato or Lycopene on Prostate Carcinogenesis in the TRAMP Model
Authors: Tan Hsueh-Li , Thomas-Ahner Jennifer M. , Moran Nancy E. , Cooperstone Jessica L. , Erdman John W. , Young Gregory S. , Clinton Steven K.
Published: April 2023

Pathological progression in the TRAMP mouse prostate.
Supplemental Figure S3 from Piperlongumine Induces Reactive Oxygen Species (ROS)-Dependent Downregulation of Specificity Protein Transcription Factors
Authors: Karki Keshav , Hedrick Erik , Kasiappan Ravi , Jin Un-Ho , Safe Stephen
Published: April 2023

Quantitative PCR was used to quantitate the relative band intensities of the ChIP assay (results in triplicate) in Figures 6A and 6B.
Supplementary Tables from The Association Between Periodontal Disease and Breast Cancer in a Prospective Cohort Study
Authors: Jia Mengmeng , Wu Zeni , Vogtmann Emily , O'Brien Katie M. , Weinberg Clarice R. , Sandler Dale P. , Gierach Gretchen L.
Published: April 2023

Supplementary Tables S1-S4
Supplemental Table 5 from Influence of Obesity on Breast Density Reduction by Omega-3 Fatty Acids: Evidence from a Randomized Clinical Trial
Authors: Sandhu Narinder , Schetter Susann E. , Liao Jason , Hartman Terryl J. , Richie John P. , McGinley John , Thompson Henry J. , Prokopczyk Bogdan , DuBrock Cynthia , Signori Carina , Hamilton Christopher , Calcagnotto Ana , Trushin Neil , Aliaga Cesar , Demers Laurence M. , El-Bayoumy Karam , Manni Andrea
Published: April 2023

Summary of adverse events.
Supplementary Table 1 from Bacterial Vaginosis Decreases the Risk of Cervical Cytological Abnormalities
Authors: Long Tengfei , Zhang Chao , He Gui , Hu Yue , Lin Zhongqiu , Long Lingli
Published: April 2023

Supplementary Table 1: Cytology results, HPV, VVC and BV infection rates by age distribution
Supplementary Figure 1 from Bacterial Vaginosis Decreases the Risk of Cervical Cytological Abnormalities
Authors: Long Tengfei , Zhang Chao , He Gui , Hu Yue , Lin Zhongqiu , Long Lingli
Published: April 2023

Supplementary Figure 1: Microbiological examinations in ThinPrep cytological tests smears (Pap stain 400×)
Supplementary Data from Breast Cancer Characteristics and Survival among Users versus Nonusers of Raloxifene
Authors: Pinsky Paul F. , Miller Eric A. , Heckman-Stoddard Brandy M. , Minasian Lori
Published: April 2023

Supplemental Table
Supplementary Material from Analysis of the Transcriptome: Regulation of Cancer Stemness in Breast Ductal Carcinoma In Situ by Vitamin D Compounds
Authors: Shan Naing Lin , Minden Audrey , Furmanski Philip , Bak Min Ji , Cai Li , Wernyj Roman , Sargsyan Davit , Cheng David , Wu Renyi , Kuo Hsiao-Chen D. , Li Shanyi N. , Fang Mingzhu , Maehr Hubert , Kong Ah-Ng , Suh Nanjoo
Published: April 2023

Supplementary Tables S1, S2, and Figures S1, S2, S3, S4, S5
Table S2 from A Randomized Phase II Trial of Pioglitazone for Lung Cancer Chemoprevention in High-Risk Current and Former Smokers
Authors: Keith Robert L. , Blatchford Patrick J. , Merrick Daniel T. , Bunn Paul A. , Bagwell Brandi , Dwyer-Nield Lori D. , Jackson Mary K. , Geraci Mark W. , Miller York E.
Published: April 2023

Adverse Events Summary
Table S1 from A Randomized Phase II Trial of Pioglitazone for Lung Cancer Chemoprevention in High-Risk Current and Former Smokers
Authors: Keith Robert L. , Blatchford Patrick J. , Merrick Daniel T. , Bunn Paul A. , Bagwell Brandi , Dwyer-Nield Lori D. , Jackson Mary K. , Geraci Mark W. , Miller York E.
Published: April 2023

Primary Biopsy Analysis
Table S5 from Association of Common Use Pharmaceuticals in Reducing Risk of Esophageal Adenocarcinoma: A SEER–Medicare Analysis
Authors: Loomans-Kropp Holli A. , Chaloux Matthew , Richmond Ellen , Umar Asad
Published: April 2023

Part D claims (2+ on different days) of esophageal adenocarcinoma cases and controls, by year.
Table S4 from Association of Common Use Pharmaceuticals in Reducing Risk of Esophageal Adenocarcinoma: A SEER–Medicare Analysis
Authors: Loomans-Kropp Holli A. , Chaloux Matthew , Richmond Ellen , Umar Asad
Published: April 2023

Charlson and non-Charlson comorbidities of EAC cases and population controls, by BE status.
Supplementary Figure 3 from Stress-induced Norepinephrine Downregulates CCL2 in Macrophages to Suppress Tumor Growth in a Model of Malignant Melanoma
Authors: Steinberger Kayla J. , Bailey Michael T. , Gross Amy C. , Sumner Laura A. , Voorhees Jeffrey L. , Crouser Nisha , Curry Jennifer M. , Wang Yijie , DeVries A. Courtney , Marsh Clay B. , Glaser Ronald , Yang Eric V. , Eubank Timothy D.
Published: April 2023

Neither norepinephrine nor recombinant CCL2 have toxic effects on B16F10 cells.
Table S2 from Association of Common Use Pharmaceuticals in Reducing Risk of Esophageal Adenocarcinoma: A SEER–Medicare Analysis
Authors: Loomans-Kropp Holli A. , Chaloux Matthew , Richmond Ellen , Umar Asad
Published: April 2023

Comorbid conditions and ICD-9-CM/ICD-10 diagnostic codes.
Supplementary Table Legends from Association of Common Use Pharmaceuticals in Reducing Risk of Esophageal Adenocarcinoma: A SEER–Medicare Analysis
Authors: Loomans-Kropp Holli A. , Chaloux Matthew , Richmond Ellen , Umar Asad
Published: April 2023

Supplementary Table Legends
Supplementary Methods and tables from Plasma Inflammatory Markers and Risk of Advanced Colorectal Adenoma in Women
Authors: Song Mingyang , Mehta Raaj S. , Wu Kana , Fuchs Charles S. , Ogino Shuji , Giovannucci Edward L. , Chan Andrew T.
Published: April 2023

This file contains supplementary methods on assessment of dietary and lifestyle factors, and supplementary table 1 (Stratified association of plasma MIC-1 level with risk of advanced colorectal adenomas in the Nurses' Health Study (1990-2008)).
Supplemental Table S1 from Economic Evaluation of Web- versus Telephone-based Interventions to Simultaneously Increase Colorectal and Breast Cancer Screening Among Women
Authors: Huang Danmeng , Lairson David R. , Chung Tong H. , Monahan Patrick O. , Rawl Susan M. , Champion Victoria L.
Published: April 2023

Supplemental Table S1 presents cost-effectiveness results for completing both screening tests from primary ITT analyses and best estimate analysis.
Table S3 from Uptake and Predictors of Opportunistic Salpingectomy for Ovarian Cancer Risk Reduction in the United States
Authors: Karia Pritesh S. , Joshu Corinne E. , Visvanathan Kala
Published: April 2023

This table shows the results of the interrupted time series analysis of tubal ligation, OS for sterilization, hysterectomy, and hysterectomy and OS before and after the clinical practice guideline release.
Table S1 from Uptake and Predictors of Opportunistic Salpingectomy for Ovarian Cancer Risk Reduction in the United States
Authors: Karia Pritesh S. , Joshu Corinne E. , Visvanathan Kala
Published: April 2023

This table shows the International Classification of Diseases and Current Procedural Terminology codes that were used to identify the analytic population.
Figure S1 from Early Exposure to a High Fat/High Sugar Diet Increases the Mammary Stem Cell Compartment and Mammary Tumor Risk in Female Mice
Authors: Lambertz Isabel U. , Luo Linjie , Berton Thomas R. , Schwartz Scott L. , Hursting Stephen D. , Conti Claudio J. , Fuchs-Young Robin
Published: April 2023

Figure S1 shows representative GTT and ITT results of the parents used to produce study animals.
Supplementary Figure from Genetically Predicted Circulating Levels of Antioxidants and Risk of Breast and Ovarian Cancer
Authors: Zhao Huanling , Zhu Jiahao , TSE Lap Ah , Kinra Sanjay , Li Yingjun
Published: April 2023

Supplementary Figure from Genetically Predicted Circulating Levels of Antioxidants and Risk of Breast and Ovarian Cancer
Table S3 from Flaxseed Consumption Inhibits Chemically Induced Lung Tumorigenesis and Modulates Expression of Phase II Enzymes and Inflammatory Cytokines in A/J Mice
Authors: Chikara Shireen , Mamidi Sujan , Sreedasyam Avinash , Chittem Kishore , Pietrofesa Ralph , Zuppa Athena , Moorthy Ganesh , Dyer Neil , Christofidou-Solomidou Melpo , Reindl Katie M.
Published: April 2023

RNA-Seq results for flaxseed normal lung tissue (FN) vs. control normal lung tissue (CN)
Table S2 from Flaxseed Consumption Inhibits Chemically Induced Lung Tumorigenesis and Modulates Expression of Phase II Enzymes and Inflammatory Cytokines in A/J Mice
Authors: Chikara Shireen , Mamidi Sujan , Sreedasyam Avinash , Chittem Kishore , Pietrofesa Ralph , Zuppa Athena , Moorthy Ganesh , Dyer Neil , Christofidou-Solomidou Melpo , Reindl Katie M.
Published: April 2023

List of primers for RT-qPCR
Figure S1 from Flaxseed Consumption Inhibits Chemically Induced Lung Tumorigenesis and Modulates Expression of Phase II Enzymes and Inflammatory Cytokines in A/J Mice
Authors: Chikara Shireen , Mamidi Sujan , Sreedasyam Avinash , Chittem Kishore , Pietrofesa Ralph , Zuppa Athena , Moorthy Ganesh , Dyer Neil , Christofidou-Solomidou Melpo , Reindl Katie M.
Published: April 2023

TP63 protein expression in control and flaxseed-fed mouse lungs. A) TP63 protein expression was determined by western blotting in control (C) and flaxseed (F)-fed mouse lung tissues. B) Densitometry was performed, and TP63 expression was normalized to GAPDH values.
Figure S2 from Upregulation of miR-130b Contributes to Risk of Poor Prognosis and Racial Disparity in African-American Prostate Cancer
Authors: Hashimoto Yutaka , Shiina Marisa , Dasgupta Pritha , Kulkarni Priyanka , Kato Taku , Wong Ryan K. , Tanaka Yuichiro , Shahryari Varahram , Maekawa Shigekatsu , Yamamura Soichiro , Saini Sharanjot , Deng Guoren , Tabatabai Z. Laura , Majid Shahana , Dahiya Rajvir
Published: April 2023

Pearsonâ€™s r correlation heatmap.
Figure S1 from Upregulation of miR-130b Contributes to Risk of Poor Prognosis and Racial Disparity in African-American Prostate Cancer
Authors: Hashimoto Yutaka , Shiina Marisa , Dasgupta Pritha , Kulkarni Priyanka , Kato Taku , Wong Ryan K. , Tanaka Yuichiro , Shahryari Varahram , Maekawa Shigekatsu , Yamamura Soichiro , Saini Sharanjot , Deng Guoren , Tabatabai Z. Laura , Majid Shahana , Dahiya Rajvir
Published: April 2023

ROC analysis of miR-130b expression in the SFVAMC prostate cancer patient cohort.
Supplementary Figure Legends from Combination of Erlotinib and Naproxen Employing Pulsatile or Intermittent Dosing Profoundly Inhibits Urinary Bladder Cancers
Authors: Mohammed Altaf , Miller Mark Steven , Lubet Ronald A. , Suen Chen S. , Sei Shizuko , Shoemaker Robert H. , Juliana Margaret M. , Moeinpour Fariba L. , Grubbs Clinton J.
Published: April 2023

Supplementary Figure Legends
Figure S2 from Combination of Erlotinib and Naproxen Employing Pulsatile or Intermittent Dosing Profoundly Inhibits Urinary Bladder Cancers
Authors: Mohammed Altaf , Miller Mark Steven , Lubet Ronald A. , Suen Chen S. , Sei Shizuko , Shoemaker Robert H. , Juliana Margaret M. , Moeinpour Fariba L. , Grubbs Clinton J.
Published: April 2023

Supplementary Figure 2
Supplementary Table 1 from Sedentary Behavior and Prostate Cancer: A Systematic Review and Meta-Analysis of Prospective Cohort Studies
Authors: Berger Felix F. , Leitzmann Michael F. , Hillreiner Andrea , Sedlmeier Anja M. , Prokopidi-Danisch Maria Eleni , Burger Maximilian , Jochem Carmen
Published: April 2023

Points awarded on the Newcaste-Ottawa Scale for each individual study.
Supplementary Table 5 from Molecular Triage of Premalignant Lesions in Liquid-Based Cervical Cytology and Circulating Cell-Free DNA from Urine, Using a Panel of Methylated Human Papilloma Virus and Host Genes
Authors: Guerrero-Preston Rafael , Valle Blanca L. , Jedlicka Anne , Turaga Nitesh , Folawiyo Oluwasina , Pirini Francesca , Lawson Fahcina , Vergura Angelo , Noordhuis Maartje , Dziedzic Amanda , Pérez Gabriela , Renehan Marisa , Guerrero-Diaz Carolina , De Jesus Rodríguez Edgar , Diaz-Montes Teresa , Rodríguez Orengo José , Méndez Keimari , Romaguera Josefina , Trock Bruce J. , Florea Liliana , Sidransky David
Published: April 2023

Circulating cell free DNA isolation results.
Table S1 from Post Genome-Wide Gene–Environment Interaction Study Using Random Survival Forest: Insulin Resistance, Lifestyle Factors, and Colorectal Cancer Risk
Authors: Jung Su Yon , Papp Jeanette C. , Sobel Eric M. , Zhang Zuo-Feng
Published: April 2023

Allele frequencies of insulin resistance-relevant SNPs, stratified by colorectal cancer
Supplementary Table 2B from Molecular Triage of Premalignant Lesions in Liquid-Based Cervical Cytology and Circulating Cell-Free DNA from Urine, Using a Panel of Methylated Human Papilloma Virus and Host Genes
Authors: Guerrero-Preston Rafael , Valle Blanca L. , Jedlicka Anne , Turaga Nitesh , Folawiyo Oluwasina , Pirini Francesca , Lawson Fahcina , Vergura Angelo , Noordhuis Maartje , Dziedzic Amanda , Pérez Gabriela , Renehan Marisa , Guerrero-Diaz Carolina , De Jesus Rodríguez Edgar , Diaz-Montes Teresa , Rodríguez Orengo José , Méndez Keimari , Romaguera Josefina , Trock Bruce J. , Florea Liliana , Sidransky David
Published: April 2023

Dual Sequence capture of high risk HPV in TrDNA aligned to all high risk HPV types and low risk HPV types from PaVE database.
Supplementary Table 1 from Molecular Triage of Premalignant Lesions in Liquid-Based Cervical Cytology and Circulating Cell-Free DNA from Urine, Using a Panel of Methylated Human Papilloma Virus and Host Genes
Authors: Guerrero-Preston Rafael , Valle Blanca L. , Jedlicka Anne , Turaga Nitesh , Folawiyo Oluwasina , Pirini Francesca , Lawson Fahcina , Vergura Angelo , Noordhuis Maartje , Dziedzic Amanda , Pérez Gabriela , Renehan Marisa , Guerrero-Diaz Carolina , De Jesus Rodríguez Edgar , Diaz-Montes Teresa , Rodríguez Orengo José , Méndez Keimari , Romaguera Josefina , Trock Bruce J. , Florea Liliana , Sidransky David
Published: April 2023

Patient characteristics.
Figure S7 from Post Genome-Wide Gene–Environment Interaction Study Using Random Survival Forest: Insulin Resistance, Lifestyle Factors, and Colorectal Cancer Risk
Authors: Jung Su Yon , Papp Jeanette C. , Sobel Eric M. , Zhang Zuo-Feng
Published: April 2023

Contour plot by physical activity
Supplementary Figure 6B from Molecular Triage of Premalignant Lesions in Liquid-Based Cervical Cytology and Circulating Cell-Free DNA from Urine, Using a Panel of Methylated Human Papilloma Virus and Host Genes
Authors: Guerrero-Preston Rafael , Valle Blanca L. , Jedlicka Anne , Turaga Nitesh , Folawiyo Oluwasina , Pirini Francesca , Lawson Fahcina , Vergura Angelo , Noordhuis Maartje , Dziedzic Amanda , Pérez Gabriela , Renehan Marisa , Guerrero-Diaz Carolina , De Jesus Rodríguez Edgar , Diaz-Montes Teresa , Rodríguez Orengo José , Méndez Keimari , Romaguera Josefina , Trock Bruce J. , Florea Liliana , Sidransky David
Published: April 2023

Scatter plots of HPV 16-L1 methylation in cervical brush (S7a) and urine ccfDNA (S7b). HPV16-L1 qMSP methylation can discriminate bisulfite treated cervical epithelium DNA and urine ccfDNA from patients with normal cytology, from women with dysplastic cytology, and premalignant cervical lesions with high Sensitivity and Specificity.
Figure S2 from Post Genome-Wide Gene–Environment Interaction Study Using Random Survival Forest: Insulin Resistance, Lifestyle Factors, and Colorectal Cancer Risk
Authors: Jung Su Yon , Papp Jeanette C. , Sobel Eric M. , Zhang Zuo-Feng
Published: April 2023

Flow diagram of analytic cohort
Supplementary Figure 3B from Molecular Triage of Premalignant Lesions in Liquid-Based Cervical Cytology and Circulating Cell-Free DNA from Urine, Using a Panel of Methylated Human Papilloma Virus and Host Genes
Authors: Guerrero-Preston Rafael , Valle Blanca L. , Jedlicka Anne , Turaga Nitesh , Folawiyo Oluwasina , Pirini Francesca , Lawson Fahcina , Vergura Angelo , Noordhuis Maartje , Dziedzic Amanda , Pérez Gabriela , Renehan Marisa , Guerrero-Diaz Carolina , De Jesus Rodríguez Edgar , Diaz-Montes Teresa , Rodríguez Orengo José , Méndez Keimari , Romaguera Josefina , Trock Bruce J. , Florea Liliana , Sidransky David
Published: April 2023

Pre- and Post-Capture HPV qPCR results for five TrDNA samples together with HeLa genomic control (dark blue) and No DNA controls (purple).