bluuebunny/crossref_metadata_2025 huggingface dataset:
Impact of Seed Transmission on the Infection and Development of Pitch Canker Disease in Pinus radiata
Authors: Evira-Recuenco Margarita , Iturritxa Eugenia , Raposo Rosa
Published: September 2015

The aim of this study was to determine the impact of seed inoculum on subsequent disease development in nurseries, specifically studying incidence of seed infection, transmission rate of seed to seedlings, and rate of disease development from the primary inoculum source. Transmission rate of Fusarium circinatum (F. circinatum) from symptomatic trees of Pinus radiata (P. radiata) to seed was 0.73%, being the fungus mainly on the coat. Seed infection incidence was positively correlated with tree disease severity. Seeds also become contaminated with F. circinatum during storage, where high relative humidity had a great effect regardless of temperature. Transmission rates from seeds to symptomatic seedlings measured at 48 days after seed inoculation with 104 and 106 was 28% and 80%, respectively. Seedlings showed symptoms of wilting and dieback, and eventually died within the total duration of this study (475 days). By this time, there were two remaining symptomless seedlings (1% of the total). F. circinatum was recovered from each of them, demonstrating its persistence in seedlings. Fungus populations in roots were estimated between 105 and 107 cfu/g in symptomatic plants for both inoculum doses and up to 104 cfu/g in asymptomatic plants. Disease infection rate was similar in post-emergence damping-off (up two months growing) and for established seedlings (up to eight months) after seeds were inoculated with 104 spores/mL.
Representing Others in a Public Good Game
Authors: Hauge Karen , Rogeberg Ole
Published: September 2015

In many important public good situations the decision-making power and authority is delegated to representatives who make binding decisions on behalf of a larger group. The purpose of this study is to compare contribution decisions made by individuals with contribution decisions made by group representatives. We present the results from a laboratory experiment that compares decisions made by individuals in inter-individual public good games with decisions made by representatives on behalf of their group in inter-group public good games. Our main finding is that contribution behavior differs between individuals and group representatives, but only for women. While men’s choices are equally self-interested as individuals and group representatives, women make less self-interested choices as group representatives.
Identification of 4CL Genes in Desert Poplars and Their Changes in Expression in Response to Salt Stress
Authors: Zhang Cai-Hua , Ma Tao , Luo Wen-Chun , Xu Jian-Mei , Liu Jian-Quan , Wan Dong-Shi
Published: September 2015

4-Coumarate:CoA ligase (4CL) genes are critical for the biosynthesis of plant phenylpropanoids. Here we identified 20 4CL genes in the genomes of two desert poplars (Populus euphratica and P. pruinosa) and salt-sensitive congener (P. trichocarpa), but 12 in Salix suchowensis (Salix willow). Phylogenetic analyses clustered all Salicaceae 4CL genes into two clades, and one of them (corresponding to the 4CL-like clade from Arabidopsis) showed signals of adaptive evolution, with more genes retained in Populus than Salix and Arabidopsis. We also found that 4CL12 (in 4CL-like clade) showed positive selection along the two desert poplar lineages. Transcriptional profiling analyses indicated that the expression of 4CL2, 4CL11, and 4CL12 changed significantly in one or both desert poplars in response to salt stress compared to that of in P. trichocarpa. Our results suggest that the evolution of the 4CL genes may have contributed to the development of salt tolerance in the two desert poplars.
The Potential of Sequential Extraction in the Characterisation and Management of Wastes from Steel Processing: A Prospective Review
Authors: Rodgers Kiri , Hursthouse Andrew , Cuthbert Simon
Published: September 2015

As waste management regulations become more stringent, yet demand for resources continues to increase, there is a pressing need for innovative management techniques and more sophisticated supporting analysis techniques. Sequential extraction (SE) analysis, a technique previously applied to soils and sediments, offers the potential to gain a better understanding of the composition of solid wastes. SE attempts to classify potentially toxic elements (PTEs) by their associations with phases or fractions in waste, with the aim of improving resource use and reducing negative environmental impacts. In this review we explain how SE can be applied to steel wastes. These present challenges due to differences in sample characteristics compared with materials to which SE has been traditionally applied, specifically chemical composition, particle size and pH buffering capacity, which are critical when identifying a suitable SE method. We highlight the importance of delineating iron-rich phases, and find that the commonly applied BCR (The community Bureau of reference) extraction method is problematic due to difficulties with zinc speciation (a critical steel waste constituent), hence a substantially modified SEP is necessary to deal with particular characteristics of steel wastes. Successful development of SE for steel wastes could have wider implications, e.g., for the sustainable management of fly ash and mining wastes.
The Risk of Reported Cryptosporidiosis in Children Aged <5 Years in Australia is Highest in Very Remote Regions
Authors: Lal Aparna , Fearnley Emily , Kirk Martyn
Published: September 2015

The incidence of cryptosporidiosis is highest in children <5 years, yet little is known about disease patterns across urban and rural areas of Australia. In this study, we examine whether the risk of reported cryptosporidiosis in children <5 years varies across an urban-rural gradient, after controlling for season and gender. Using Australian data on reported cryptosporidiosis from 2001 to 2012, we spatially linked disease data to an index of geographic remoteness to examine the geographic variation in cryptosporidiosis risk using negative binomial regression. The Incidence Risk Ratio (IRR) of reported cryptosporidiosis was higher in inner regional (IRR 1.4 95% CI 1.2–1.7, p < 0.001), and outer regional areas (IRR 2.4 95% CI 2.2–2.9, p < 0.001), and in remote (IRR 5.2 95% CI 4.3–6.2, p < 0.001) and very remote (IRR 8.2 95% CI 6.9–9.8, p < 0.001) areas, compared to major cities. A linear test for trend showed a statistically significant trend with increasing remoteness. Remote communities need to be a priority for future targeted health promotion and disease prevention interventions to reduce cryptosporidiosis in children <5 years.
The Effects of Exercising in Different Natural Environments on Psycho-Physiological Outcomes in Post-Menopausal Women: A Simulation Study
Authors: White Mathew P. , Pahl Sabine , Ashbullby Katherine J. , Burton Francesca , Depledge Michael H.
Published: September 2015

The current study examined potential psycho-physiological benefits from exercising in simulated natural environments among a sample of post-menopausal women using a laboratory based protocol. Participants cycled on a stationary exercise bike for 15 min while facing either a blank wall (Control) or while watching one of three videos: Urban (Grey), Countryside (Green), Coast (Blue). Blood pressure, heart rate and affective responses were measured pre-post. Heart rate, affect, perceived exertion and time perception were also measured at 5, 10 and 15 min during exercise. Experience evaluation was measured at the end. Replicating most earlier findings, affective, but not physiological, outcomes were more positive for exercise in the simulated Green and, for the first time, Blue environment, compared to Control. Moreover, only the simulated Blue environment was associated with shorter perceived exercise duration than Control and participants were most willing to repeat exercise in the Blue setting. The current research extended earlier work by exploring the effects of “blue exercise” and by using a demographic with relatively low average levels of physical activity. That this sample of postmenopausal women were most willing to repeat a bout of exercise in a simulated Blue environment may be important for physical activity promotion in this cohort.
Pharmacogenetics of BCR/ABL Inhibitors in Chronic Myeloid Leukemia
Authors: Polillo Marialuisa , Galimberti Sara , Baratè Claudia , Petrini Mario , Danesi Romano , Di Paolo Antonello
Published: September 2015

Chronic myeloid leukemia was the first haematological neoplasia that benefited from a targeted therapy with imatinib nearly 15 years ago. Since then, several studies have investigated the role of genes, their variants (i.e., polymorphisms) and their encoded proteins in the pharmacokinetics and pharmacodynamics of BCR-ABL1 tyrosine kinase activity inhibitors (TKIs). Transmembrane transporters seem to influence in a significant manner the disposition of TKIs, especially that of imatinib at both cellular and systemic levels. In particular, members of the ATP-binding cassette (ABC) family (namely ABCB1 and ABCG2) together with solute carrier (SLC) transporters (i.e., SLC22A1) are responsible for the differences in drug pharmacokinetics. In the case of the newer TKIs, such as nilotinib and dasatinib, the substrate affinity of these drugs for transporters is variable but lower than that measured for imatinib. In this scenario, the investigation of genetic variants as possible predictive markers has led to some discordant results. With the partial exception of imatinib, these discrepancies seem to limit the application of discovered biomarkers in the clinical settings. In order to overcome these issues, larger prospective confirmative trials are needed.
Reference Genes in the Pathosystem Phakopsora pachyrhizi/ Soybean Suitable for Normalization in Transcript Profiling
Authors: Hirschburger Daniela , Müller Manuel , Voegele Ralf , Link Tobias
Published: September 2015

Phakopsora pachyrhizi is a devastating pathogen on soybean, endangering soybean production worldwide. Use of Host Induced Gene Silencing (HIGS) and the study of effector proteins could provide novel strategies for pathogen control. For both approaches quantification of transcript abundance by RT-qPCR is essential. Suitable stable reference genes for normalization are indispensable to obtain accurate RT-qPCR results. According to the Minimum Information for Publication of Quantitative Real-Time PCR Experiments (MIQE) guidelines and using algorithms geNorm and NormFinder we tested candidate reference genes from P. pachyrhizi and Glycine max for their suitability in normalization of transcript levels throughout the infection process. For P. pachyrhizi we recommend a combination of CytB and PDK or GAPDH for in planta experiments. Gene expression during in vitro stages and over the whole infection process was found to be highly unstable. Here, RPS14 and UbcE2 are ranked best by geNorm and NormFinder. Alternatively CytB that has the smallest Cq range (Cq: quantification cycle) could be used. We recommend specification of gene expression relative to the germ tube stage rather than to the resting urediospore stage. For studies omitting the resting spore and the appressorium stages a combination of Elf3 and RPS9, or PKD and GAPDH should be used. For normalization of soybean genes during rust infection Ukn2 and cons7 are recommended.
Development of Chitosan/Bacterial Cellulose Composite Films Containing Nanodiamonds as a Potential Flexible Platform for Wound Dressing
Authors: Ostadhossein Fatemeh , Mahmoudi Nafiseh , Morales-Cid Gabriel , Tamjid Elnaz , Navas-Martos Francisco , Soriano-Cuadrado Belén , Paniza José , Simchi Abdolreza
Published: September 2015

Chitosan/bacterial cellulose composite films containing diamond nanoparticles (NDs) with potential application as wound dressing are introduced. Microstructural studies show that NDs are uniformly dispersed in the matrix, although slight agglomeration at concentrations above 2 wt % is seen. Fourier transform infrared spectroscopy reveals formation of hydrogen bonds between NDs and the polymer matrix. X-ray diffraction analysis indicates reduced crystallinity of the polymer matrix in the presence of NDs. Approximately 3.5-fold increase in the elastic modulus of the composite film is obtained by the addition of 2 wt % NDs. The results of colorimetric analysis show that the composite films are transparent but turn to gray-like and semitransparent at high ND concentrations. Additionally, a decrease in highest occupied molecular orbital (HOMO) and lowest unoccupied molecular orbital (LUMO) gap is also seen, which results in a red shift and higher absorption intensity towards the visible region. Mitochondrial activity assay using L929 fibroblast cells shows that the nanocomposite films are biocompatible (>90%) after 24 h incubation. Multiple lamellapodia and cell-cell interaction are shown. The results suggest that the developed films can potentially be used as a flexible platform for wound dressing.
Electroactive Shape Memory Property of a Cu-decorated CNT Dispersed PLA/ESO Nanocomposite
Authors: Alam Javed , Khan Aslam , Alam Manawwer , Mohan Raja
Published: September 2015

Shape memory polymer (SMP) nanocomposites with a fast electro-actuation speed were prepared by dispersing Cu-decorated carbon nanotubes (CNTs) (Cu-CNTs, 1 wt %, 2 wt %, and 3 wt %) in a polylactic acid (PLA)/epoxidized soybean oil (ESO) blend matrix. The shape memory effect (SME) induced by an electrical current was investigated by a fold-deploy “U”-shape bending test. In addition, the Cu-CNT dispersed PLA/ESO nanocomposite was characterized by atomic force microscopy (AFM), dynamic mechanical analysis (DMA) and tensile and electrical measurements. The results demonstrated that the SME was dependent on the Cu-CNT content in the nanocomposites. When comparing the SMEs of the nanocomposite specimens with different Cu-CNT contents, the 2 wt % Cu-CNT dispersed system exhibited a shape recovery as high as 98% within 35 s due to its higher electrical conductivity that results from uniform Cu-CNT dispersion. However, the nanocomposites that contained 1 wt % and 3 wt % Cu-CNTs required 75 s and 63 s, respectively, to reach a maximum recovery level. In addition, the specimens exhibited better mechanical properties after the addition of Cu-CNTs.
Liquefied Wood as Inexpensive Precursor-Feedstock for Bio-Mediated Incorporation of (R)-3-Hydroxyvalerate into Polyhydroxyalkanoates
Authors: Koller Martin , Dias Miguel , Rodríguez-Contreras Alejandra , Kunaver Matjaž , Žagar Ema , Kržan Andrej , Braunegg Gerhart
Published: September 2015

Liquefied wood (LW) prepared in a microwave process was applied as a novel; inexpensive precursor feedstock for incorporation of (R)-3-hydroxyvalerate (3HV) into polyhydroxyalkanoate (PHA) biopolyesters in order to improve the biopolyester’s material quality; Cupriavidus necator was applied as microbial production strain. For proof of concept, pre-experiments were carried out on a shake flask scale using different mixtures of glucose and LW as carbon source. The results indicate that LW definitely acts as a 3HV precursor, but, at the same time, displays toxic effects on C. necator at concentrations exceeding 10 g/L. Based on these findings, PHA biosynthesis under controlled conditions was performed using a fed-batch feeding regime on a bioreactor scale. As major outcome, a poly(3HB-co-0.8%-3HV) copolyester was obtained displaying a desired high molar mass of Mw = 5.39 × 105 g/mol at low molar-mass dispersity (ĐM of 1.53), a degree of crystallinity (Xc) of 62.1%, and melting temperature Tm (176.3 °C) slightly lower than values reported for poly([R]-3-hydroxybutyrate) (PHB) homopolyester produced by C. necator; thus, the produced biopolyester is expected to be more suitable for polymer processing purposes.
Achieving Metabolic Flux Analysis for S. cerevisiae at a Genome-Scale: Challenges, Requirements, and Considerations
Authors: Gopalakrishnan Saratram , Maranas Costas
Published: September 2015

Recent advances in 13C-Metabolic flux analysis (13C-MFA) have increased its capability to accurately resolve fluxes using a genome-scale model with narrow confidence intervals without pre-judging the activity or inactivity of alternate metabolic pathways. However, the necessary precautions, computational challenges, and minimum data requirements for successful analysis remain poorly established. This review aims to establish the necessary guidelines for performing 13C-MFA at the genome-scale for a compartmentalized eukaryotic system such as yeast in terms of model and data requirements, while addressing key issues such as statistical analysis and network complexity. We describe the various approaches used to simplify the genome-scale model in the absence of sufficient experimental flux measurements, the availability and generation of reaction atom mapping information, and the experimental flux and metabolite labeling distribution measurements to ensure statistical validity of the obtained flux distribution. Organism-specific challenges such as the impact of compartmentalization of metabolism, variability of biomass composition, and the cell-cycle dependence of metabolism are discussed. Identification of errors arising from incorrect gene annotation and suggested alternate routes using MFA are also highlighted.
Dietary Behaviours, Impulsivity and Food Involvement: Identification of Three Consumer Segments
Authors: Sarmugam Rani , Worsley Anthony
Published: September 2015

This study aims to (1) identify consumer segments based on consumers’ impulsivity and level of food involvement, and (2) examine the dietary behaviours of each consumer segment. An Internet-based cross-sectional survey was conducted among 530 respondents. The mean age of the participants was 49.2 ± 16.6 years, and 27% were tertiary educated. Two-stage cluster analysis revealed three distinct segments; “impulsive, involved” (33.4%), “rational, health conscious” (39.2%), and “uninvolved” (27.4%). The “impulsive, involved” segment was characterised by higher levels of impulsivity and food involvement (importance of food) compared to the other two segments. This segment also reported significantly more frequent consumption of fast foods, takeaways, convenience meals, salted snacks and use of ready-made sauces and mixes in cooking compared to the “rational, health conscious” consumers. They also reported higher frequency of preparing meals at home, cooking from scratch, using ready-made sauces and mixes in cooking and higher vegetable consumption compared to the “uninvolved” consumers. The findings show the need for customised approaches to the communication and promotion of healthy eating habits.
Regulation of Dendritic Cell Function by Vitamin D
Authors: Barragan Myriam , Good Misty , Kolls Jay
Published: September 2015

Studies over the last two decades have revealed profound immunomodulatory aspects of vitamin D on various aspects of the immune system. This review will provide an overview of Vitamin D metabolism, a description of dendritic cell subsets, and highlight recent advances on the effects of vitamin D on dendritic cell function, maturation, cytokine production and antigen presentation. The active form of vitamin D, 1,25(OH)2D3, has important immunoregulatory and anti-inflammatory effects. Specifically, the 1,25(OH)2D3-Vitamin D3 complex can affect the maturation and migration of many dendritic cell subsets, conferring a special immunoregulatory role as well as tolerogenic properties affecting cytokine and chemokine production. Furthermore, there have been many recent studies demonstrating the effects of Vitamin D on allergic disease and autoimmunity. A clear understanding of the effects of the various forms of Vitamin D will provide new opportunities to improve human health.
Dietary Pattern Is Associated with Obesity in Older People in China: Data from China Health and Nutrition Survey (CHNS)
Authors: Xu Xiaoyue , Hall John , Byles Julie , Shi Zumin
Published: September 2015

Background: No studies have been conducted to explore the associations between dietary patterns and obesity among older Chinese people, by considering gender and urbanization level differences. Methods: We analyzed data from the 2009 China Health and Nutrition Survey (2745 individuals, aged ≥ 60 years). Dietary data were obtained using 24 hour-recall over three consecutive days. Height, Body Weight, and Waist Circumference were measured. Exploratory factor analysis was used to identify dietary patterns. Multinomial and Poisson regression models were used to examine the association between dietary patterns and Body Mass Index (BMI) status/central obesity. Results: The prevalence of general and central obesity was 9.5% and 53.4%. Traditional dietary pattern (high intake of rice, pork and vegetables) was inversely associated with general/central obesity; modern dietary pattern (high intake of fruit, fast food, and processed meat) was positively associated with general/central obesity. The highest quartile of traditional dietary pattern had a lower risk of general/central obesity compared with the lowest quartile, while an inverse picture was found for the modern dietary pattern. These associations were consistent by gender and urbanization levels. Conclusions: Dietary patterns are associated with general/central obesity in older Chinese. This study reinforces the importance of a healthy diet in promoting healthy ageing in China.
Magnesium in Prevention and Therapy
Authors: Gröber Uwe , Schmidt Joachim , Kisters Klaus
Published: September 2015

Magnesium is the fourth most abundant mineral in the body. It has been recognized as a cofactor for more than 300 enzymatic reactions, where it is crucial for adenosine triphosphate (ATP) metabolism. Magnesium is required for DNA and RNA synthesis, reproduction, and protein synthesis. Moreover, magnesium is essential for the regulation of muscular contraction, blood pressure, insulin metabolism, cardiac excitability, vasomotor tone, nerve transmission and neuromuscular conduction. Imbalances in magnesium status—primarily hypomagnesemia as it is seen more common than hypermagnesemia—might result in unwanted neuromuscular, cardiac or nervous disorders. Based on magnesium’s many functions within the human body, it plays an important role in prevention and treatment of many diseases. Low levels of magnesium have been associated with a number of chronic diseases, such as Alzheimer’s disease, insulin resistance and type-2 diabetes mellitus, hypertension, cardiovascular disease (e.g., stroke), migraine headaches, and attention deficit hyperactivity disorder (ADHD).
Biocatalytic Self-Cleaning Polymer Membranes
Authors: Schulze Agnes , Stoelzer Astrid , Striegler Karl , Starke Sandra , Prager Andrea
Published: September 2015

Polymer membrane surfaces have been equipped with the digestive enzyme trypsin. Enzyme immobilization was performed by electron beam irradiation in aqueous media within a one-step method. Using this method, trypsin was covalently and side-unspecific attached to the membrane surface. Thus, the use of preceding polymer functionalization and the use of toxic solvents or reagents can be avoided. The resulting membranes showed significantly improved antifouling properties as demonstrated by repeated filtration of protein solutions. Furthermore, the biocatalytic membrane can be simply “switched on” to actively degrade a fouling layer on the membrane surface and regain the initial permeability. The membrane pore structure (pore size and porosity) was neither damaged by the electron beam treatment nor blocked by the enzyme loading, ensuring a stable membrane performance.
Multi-Robot Item Delivery and Foraging: Two Sides of a Coin
Authors: Liemhetcharat Somchaya , Yan Rui , Tee Keng , Lee Matthew
Published: September 2015

Multi-robot foraging has been widely studied in the literature, and the general assumption is that the robots are simple, i.e., with limited processing and carrying capacity. We previously studied continuous foraging with slightly more capable robots, and in this article, we are interested in using similar robots for item delivery. Interestingly, item delivery and foraging are two sides of the same coin: foraging an item from a location is similar to satisfying a demand. We formally define the multi-robot item delivery problem and show that the continuous foraging problem is a special case of it. We contribute distributed multi-robot algorithms that solve the item delivery and foraging problems and describe how our shared world model is synchronized across the multi-robot team. We performed extensive experiments on simulated robots using a Java simulator, and we present our results to demonstrate that we outperform benchmark algorithms from multi-robot foraging.
The Use of Multi-Temporal Landsat Imageries in Detecting Seasonal Crop Abandonment
Authors: Yusoff Noryusdiana , Muharam Farrah
Published: September 2015

Abandonment of agricultural land is a global issue and a waste of resources and brings a negative impact on the local economy. It is also one of the key contributing factors in certain environmental problems, such as soil erosion and carbon sequestration. In order to address such problems related to land abandonment, their spatial distribution must first be precisely identified. Hence, this study proposes the use of multi-temporal Landsat imageries, together with crop phenology information and an object-oriented classification technique, to identify abandoned paddy and rubber areas. Results indicate that Landsat time-series images were highly beneficial and, in fact, essential in identifying abandoned paddy and rubber areas, particularly due to the unique phenology of these seasonal crops. To differentiate between abandoned and non-abandoned paddy areas, a minimum of three time-series images, mainly acquired during the planting seasons is required. For rubber, multi-temporal images should be examined in order to confirm the wintering season. The study demonstrates the advantages of using multi-temporal Landsat imageries in identifying abandoned paddy and rubber areas wherein an accuracy of 93.33% ± 14% and 83.33% ± 1%, respectively, were achieved.
Evaluation of Medium Spatial Resolution BRDF-Adjustment Techniques Using Multi-Angular SPOT4 (Take5) Acquisitions
Authors: Claverie Martin , Vermote Eric , Franch Belen , He Tao , Hagolle Olivier , Kadiri Mohamed , Masek Jeff
Published: September 2015

High-resolution sensor Surface Reflectance (SR) data are affected by surface anisotropy but are difficult to adjust because of the low temporal frequency of the acquisitions and the low angular sampling. This paper evaluates five high spatial resolution Bidirectional Reflectance Distribution Function (BRDF) adjustment techniques. The evaluation is based on the noise level of the SR Time Series (TS) corrected to a normalized geometry (nadir view, 45° sun zenith angle) extracted from the multi-angular acquisitions of SPOT4 over three study areas (one in Arizona, two in France) during the five-month SPOT4 (Take5) experiment. Two uniform techniques (Cst, for Constant, and Av, for Average), relying on the Vermote–Justice–Bréon (VJB) BRDF method, assume no variation in space of the BRDF shape. Two methods (VI-dis, for NDVI-based disaggregation and LC-dis, for Land-Cover based disaggregation) are based on disaggregation of the MODIS-derived BRDF VJB parameters using vegetation index and land cover, respectively. The last technique (LUM, for Look-Up Map) relies on the MCD43 MODIS BRDF products and a crop type data layer. The VI-dis technique produced the lowest level of noise corresponding to the most effective adjustment: reduction from directional to normalized SR TS noises by 40% and 50% on average, for red and near-infrared bands, respectively. The uniform techniques displayed very good results, suggesting that a simple and uniform BRDF-shape assumption is good enough to adjust the BRDF in such geometric configuration (the view zenith angle varies from nadir to 25°). The most complex techniques relying on land cover (LC-dis and LUM) displayed contrasting results depending on the land cover.
Quality Assessment of S-NPP VIIRS Land Surface Temperature Product
Authors: Liu Yuling , Yu Yunyue , Yu Peng , Göttsche Frank , Trigo Isabel
Published: September 2015

The VIIRS Land Surface Temperature (LST) Environmental Data Record (EDR) has reached validated (V1 stage) maturity in December 2014. This study compares VIIRS v1 LST with the ground in situ observations and with heritage LST product from MODIS Aqua and AATSR. Comparisons against U.S. SURFRAD ground observations indicate a similar accuracy among VIIRS, MODIS and AATSR LST, in which VIIRS LST presents an overall accuracy of −0.41 K and precision of 2.35 K. The result over arid regions in Africa suggests that VIIRS and MODIS underestimate the LST about 1.57 K and 2.97 K, respectively. The cross comparison indicates an overall close LST estimation between VIIRS and MODIS. In addition, a statistical method is used to quantify the VIIRS LST retrieval uncertainty taking into account the uncertainty from the surface type input. Some issues have been found as follows: (1) Cloud contamination, particularly the cloud detection error over a snow/ice surface, shows significant impacts on LST validation; (2) Performance of the VIIRS LST algorithm is strongly dependent on a correct classification of the surface type; (3) The VIIRS LST quality can be degraded when significant brightness temperature difference between the two split window channels is observed; (4) Surface type dependent algorithm exhibits deficiency in correcting the large emissivity variations within a surface type.
A Phenology-Based Method for Monitoring Woody and Herbaceous Vegetation in Mediterranean Forests from NDVI Time Series
Authors: Helman David , Lensky Itamar , Tessler Naama , Osem Yagil
Published: September 2015

We present an efficient method for monitoring woody (i.e., evergreen) and herbaceous (i.e., ephemeral) vegetation in Mediterranean forests at a sub pixel scale from Normalized Difference Vegetation Index (NDVI) time series derived from the Moderate Resolution Imaging Spectroradiometer (MODIS). The method is based on the distinct development periods of those vegetation components. In the dry season, herbaceous vegetation is absent or completely dry in Mediterranean forests. Thus the mean NDVI in the dry season was attributed to the woody vegetation (NDVIW). A constant NDVI value was assumed for soil background during this period. In the wet season, changes in NDVI were attributed to the development of ephemeral herbaceous vegetation in the forest floor and its maximum value to the peak green cover (NDVIH). NDVIW and NDVIH agreed well with field estimates of leaf area index and fraction of vegetation cover in two differently structured Mediterranean forests. To further assess the method’s assumptions, understory NDVI was retrieved form MODIS Bidirectional Reflectance Distribution Function (BRDF) data and compared with NDVIH. After calibration, leaf area index and woody and herbaceous vegetation covers were assessed for those forests. Applicability for pre- and post-fire monitoring is presented as a potential use of this method for forest management in Mediterranean-climate regions.
Seasonal Variation of Colored Dissolved Organic Matter in Barataria Bay, Louisiana, Using Combined Landsat and Field Data
Authors: Joshi Ishan , D’Sa Eurico
Published: September 2015

Coastal bays, such as Barataria Bay, are important transition zones between the terrigenous and marine environments that are also optically complex due to elevated amounts of particulate and dissolved constituents. Monthly field data collected over a period of 15 months in 2010 and 2011 in Barataria Bay were used to develop an empirical band ratio algorithm for the Landsat-5 TM that showed a good correlation with the Colored Dissolved Organic Matter (CDOM) absorption coefficient at 355 nm (ag355) (R2 = 0.74). Landsat-derived CDOM maps generally captured the major details of CDOM distribution and seasonal influences, suggesting the potential use of Landsat imagery to monitor biogeochemistry in coastal water environments. An investigation of the seasonal variation in ag355 conducted using Landsat-derived ag355 as well as field data suggested the strong influence of seasonality in the different regions of the bay with the marine end members (lower bay) experiencing generally low but highly variable ag355 and the freshwater end members (upper bay) experiencing high ag355 with low variability. Barataria Bay experienced a significant increase in ag355 during the freshwater release at the Davis Pond Freshwater Diversion (DPFD) following the Deep Water Horizon oil spill in 2010 and following the Mississippi River (MR) flood conditions in 2011, resulting in a weak linkage to salinity in comparison to the other seasons. Tree based statistical analysis showed the influence of high river flow conditions, high- and low-pressure systems that appeared to control ag355 by ~28%, 29% and 43% of the time duration over the study period at the marine end member just outside the bay. An analysis of CDOM variability in 2010 revealed the strong influence of the MR in controlling CDOM abundance in the lower bay during the high flow conditions, while strong winds associated with cold fronts significantly increase CDOM abundance in the upper bay, thus revealing the important role these events play in the CDOM dynamics of the bay.
An Adaptive Low-Cost GNSS/MEMS-IMU Tightly-Coupled Integration System with Aiding Measurement in a GNSS Signal-Challenged Environment
Authors: Zhou Qifan , Zhang Hai , Li You , Li Zheng
Published: September 2015

The main aim of this paper is to develop a low-cost GNSS/MEMS-IMU tightly-coupled integration system with aiding information that can provide reliable position solutions when the GNSS signal is challenged such that less than four satellites are visible in a harsh environment. To achieve this goal, we introduce an adaptive tightly-coupled integration system with height and heading aiding (ATCA). This approach adopts a novel redundant measurement noise estimation method for an adaptive Kalman filter application and also augments external measurements in the filter to aid the position solutions, as well as uses different filters to deal with various situations. On the one hand, the adaptive Kalman filter makes use of the redundant measurement system’s difference sequence to estimate and tune noise variance instead of employing a traditional innovation sequence to avoid coupling with the state vector error. On the other hand, this method uses the external height and heading angle as auxiliary references and establishes a model for the measurement equation in the filter. In the meantime, it also changes the effective filter online based on the number of tracked satellites. These measures have increasingly enhanced the position constraints and the system observability, improved the computational efficiency and have led to a good result. Both simulated and practical experiments have been carried out, and the results demonstrate that the proposed method is effective at limiting the system errors when there are less than four visible satellites, providing a satisfactory navigation solution.
Self-Adaptive Strategy Based on Fuzzy Control Systems for Improving Performance in Wireless Sensors Networks
Authors: Díaz Vicente , Martínez José-Fernán , Martínez Néstor , Del Toro Raúl
Published: September 2015

The solutions to cope with new challenges that societies have to face nowadays involve providing smarter daily systems. To achieve this, technology has to evolve and leverage physical systems automatic interactions, with less human intervention. Technological paradigms like Internet of Things (IoT) and Cyber-Physical Systems (CPS) are providing reference models, architectures, approaches and tools that are to support cross-domain solutions. Thus, CPS based solutions will be applied in different application domains like e-Health, Smart Grid, Smart Transportation and so on, to assure the expected response from a complex system that relies on the smooth interaction and cooperation of diverse networked physical systems. The Wireless Sensors Networks (WSN) are a well-known wireless technology that are part of large CPS. The WSN aims at monitoring a physical system, object, (e.g., the environmental condition of a cargo container), and relaying data to the targeted processing element. The WSN communication reliability, as well as a restrained energy consumption, are expected features in a WSN. This paper shows the results obtained in a real WSN deployment, based on SunSPOT nodes, which carries out a fuzzy based control strategy to improve energy consumption while keeping communication reliability and computational resources usage among boundaries.
Integrated WiFi/PDR/Smartphone Using an Unscented Kalman Filter Algorithm for 3D Indoor Localization
Authors: Chen Guoliang , Meng Xiaolin , Wang Yunjia , Zhang Yanzhe , Tian Peng , Yang Huachao
Published: September 2015

Because of the high calculation cost and poor performance of a traditional planar map when dealing with complicated indoor geographic information, a WiFi fingerprint indoor positioning system cannot be widely employed on a smartphone platform. By making full use of the hardware sensors embedded in the smartphone, this study proposes an integrated approach to a three-dimensional (3D) indoor positioning system. First, an improved K-means clustering method is adopted to reduce the fingerprint database retrieval time and enhance positioning efficiency. Next, with the mobile phone’s acceleration sensor, a new step counting method based on auto-correlation analysis is proposed to achieve cell phone inertial navigation positioning. Furthermore, the integration of WiFi positioning with Pedestrian Dead Reckoning (PDR) obtains higher positional accuracy with the help of the Unscented Kalman Filter algorithm. Finally, a hybrid 3D positioning system based on Unity 3D, which can carry out real-time positioning for targets in 3D scenes, is designed for the fluent operation of mobile terminals.
A Location Method Using Sensor Arrays for Continuous Gas Leakage in Integrally Stiffened Plates Based on the Acoustic Characteristics of the Stiffener
Authors: Bian Xu , Li Yibo , Feng Hao , Wang Jiaqiang , Qi Lei , Jin Shijiu
Published: September 2015

This paper proposes a continuous leakage location method based on the ultrasonic array sensor, which is specific to continuous gas leakage in a pressure container with an integral stiffener. This method collects the ultrasonic signals generated from the leakage hole through the piezoelectric ultrasonic sensor array, and analyzes the space-time correlation of every collected signal in the array. Meanwhile, it combines with the method of frequency compensation and superposition in time domain (SITD), based on the acoustic characteristics of the stiffener, to obtain a high-accuracy location result on the stiffener wall. According to the experimental results, the method successfully solves the orientation problem concerning continuous ultrasonic signals generated from leakage sources, and acquires high accuracy location information on the leakage source using a combination of multiple sets of orienting results. The mean value of location absolute error is 13.51 mm on the one-square-meter plate with an integral stiffener (4 mm width; 20 mm height; 197 mm spacing), and the maximum location absolute error is generally within a ±25 mm interval.
FRET-Based Nanobiosensors for Imaging Intracellular Ca2+ and H+ Microdomains
Authors: Zamaleeva Alsu , Despras Guillaume , Luccardini Camilla , Collot Mayeul , De Waard Michel , Oheim Martin , Mallet Jean-Maurice , Feltz Anne
Published: September 2015

Semiconductor nanocrystals (NCs) or quantum dots (QDs) are luminous point emitters increasingly being used to tag and track biomolecules in biological/biomedical imaging. However, their intracellular use as highlighters of single-molecule localization and nanobiosensors reporting ion microdomains changes has remained a major challenge. Here, we report the design, generation and validation of FRET-based nanobiosensors for detection of intracellular Ca2+ and H+ transients. Our sensors combine a commercially available CANdot®565QD as an energy donor with, as an acceptor, our custom-synthesized red-emitting Ca2+ or H+ probes. These ‘Rubies’ are based on an extended rhodamine as a fluorophore and a phenol or BAPTA (1,2-bis(o-aminophenoxy)ethane-N,N,N′,N′-tetra-acetic acid) for H+ or Ca2+ sensing, respectively, and additionally bear a linker arm for conjugation. QDs were stably functionalized using the same SH/maleimide crosslink chemistry for all desired reactants. Mixing ion sensor and cell-penetrating peptides (that facilitate cytoplasmic delivery) at the desired stoichiometric ratio produced controlled multi-conjugated assemblies. Multiple acceptors on the same central donor allow up-concentrating the ion sensor on the QD surface to concentrations higher than those that could be achieved in free solution, increasing FRET efficiency and improving the signal. We validate these nanosensors for the detection of intracellular Ca2+ and pH transients using live-cell fluorescence imaging.
Combining Low Price, Low Climate Impact and High Nutritional Value in One Shopping Basket through Diet Optimization by Linear Programming
Authors: Van Dooren Corné , Tyszler Marcelo , Kramer Gerard , Aiking Harry
Published: September 2015

Background: This study aims to find diets with low price and low climate impact, yet fulfilling all nutritional requirements. Methods: Optimization by linear programming. The program constrains 33 nutrients to fulfill Dutch dietary requirements. In a second cycle, the upper boundary for climate impact through greenhouse gas emissions (GHGE) is set to 1.6 kg carbon dioxide equivalents/day (CO2eq). In a third cycle, the costs are set on €2.50 as a constraint. The objective function of the optimization maximized the most consumed food products (n = 206) for male and female adults separately (age 31–50). Results: A diet of 63 popular and low priced basic products was found to deliver all required nutrients at an adequate level for both male and female adults. This plant-based, carbohydrate and fiber-rich diet consists mainly of wholegrain bread, potatoes, muesli, open-field vegetables and fruits. The climate impact of this diet is very low (1.59 kg CO2eq/day) compared to the average Dutch diet. By constraining costs, a low carbon diet of €2.59/day is possible. Conclusions: A two-person diet consisting of 63 products and costing €37 per week can simultaneously be healthy and yet have half the average climate impact. Linear programming is a promising tool to combine health and sustainability on both societal and individual levels.
Conformational Masking and Receptor-Dependent Unmasking of Highly Conserved Env Epitopes Recognized by Non-Neutralizing Antibodies That Mediate Potent ADCC against HIV-1
Authors: Lewis George , Finzi Andrés , DeVico Anthony , Pazgier Marzena
Published: September 2015

The mechanism of antibody-mediated protection is a major focus of HIV-1 vaccine development and a significant issue in the control of viremia. Virus neutralization, Fc-mediated effector function, or both, are major mechanisms of antibody-mediated protection against HIV-1, although other mechanisms, such as virus aggregation, are known. The interplay between virus neutralization and Fc-mediated effector function in protection against HIV-1 is complex and only partially understood. Passive immunization studies using potent broadly neutralizing antibodies (bnAbs) show that both neutralization and Fc-mediated effector function provides the widest dynamic range of protection; however, a vaccine to elicit these responses remains elusive. By contrast, active immunization studies in both humans and non-human primates using HIV-1 vaccine candidates suggest that weakly neutralizing or non-neutralizing antibodies can protect by Fc-mediated effector function, albeit with a much lower dynamic range seen for passive immunization with bnAbs. HIV-1 has evolved mechanisms to evade each type of antibody-mediated protection that must be countered by a successful AIDS vaccine. Overcoming the hurdles required to elicit bnAbs has become a major focus of HIV-1 vaccine development. Here, we discuss a less studied problem, the structural basis of protection (and its evasion) by antibodies that protect only by potent Fc-mediated effector function.
Interferon-Free Hepatitis C Treatment before and after Liver Transplantation: The Role of HCV Drug Resistance
Authors: Roche Bruno , Coilly Audrey , Roque-Afonso Anne-Marie , Samuel Didier
Published: September 2015

Hepatitis C virus (HCV) infection is one of the leading causes of end-stage liver disease and the main indication for liver transplantation (LT) in most countries. All patients who undergo LT with detectable serum HCV RNA experience graft reinfection progressing to cirrhosis within five years in 20% to 30% of them. Obtaining a sustained virological response (SVR) greatly improves overall and graft survival. Until 2011, standard antiviral therapy using PEGylated interferon (PEG-IFN) and ribavirin (RBV) was the only effective therapy, with an SVR rate around 30% in this setting. For patients infected with genotype 1, first generation NS3/4A protease inhibitors (PIs), boceprevir (BOC) or telaprevir (TVR), associated with PEG-IFN and RBV for 48 weeks have increased the SVR rates to 60% in non-transplant patients. However, tolerability and drug-drug interactions with calcineurin inhibitors (CNI) are both limiting factors of their use in the liver transplant setting. Over recent years, the efficacy of antiviral C therapy has improved dramatically using new direct-acting antiviral (DAA) agents without PEG-IFN and/or RBV, leading to SVR rates over 90% in non-transplant patients. Results available for transplant patients showed a better efficacy and tolerability and less drug-drug interactions than with first wave PIs. However, some infrequent cases of viral resistance have been reported using PIs or NS5A inhibitors pre- or post-LT that can lead to difficulties in the management of these patients.
Tight Junctions Go Viral!
Authors: Torres-Flores Jesús , Arias Carlos
Published: September 2015

Tight junctions (TJs) are highly specialized membrane domains involved in many important cellular processes such as the regulation of the passage of ions and macromolecules across the paracellular space and the establishment of cell polarity in epithelial cells. Over the past few years there has been increasing evidence that different components of the TJs can be hijacked by viruses in order to complete their infectious cycle. Viruses from at least nine different families of DNA and RNA viruses have been reported to use TJ proteins in their benefit. For example, TJ proteins such as JAM-A or some members of the claudin family of proteins are used by members of the Reoviridae family and hepatitis C virus as receptors or co-receptors during their entry into their host cells. Reovirus, in addition, takes advantage of the TJ protein Junction Adhesion Molecule-A (JAM-A) to achieve its hematogenous dissemination. Some other viruses are capable of regulating the expression or the localization of TJ proteins to induce cell transformation or to improve the efficiency of their exit process. This review encompasses the importance of TJs for viral entry, replication, dissemination, and egress, and makes a clear statement of the importance of studying these proteins to gain a better understanding of the replication strategies used by viruses that infect epithelial and/or endothelial cells.