bluuebunny/crossref_metadata_2025 huggingface dataset:
Portuguese Artisanal Fishers’ Knowledge About Elasmobranchs—A Case Study
Authors: Silva Priscila M. , Teixeira Célia M. , Pita Cristina , Cabral Henrique N. , França Susana
Published: September 2021

The high economic value of fisheries was historically associated to commercial teleost fishes. Since the 1970s, despite some elasmobranchs becoming an important target or a bycatch, relatively little research has been carried out on this group because of their low economic value. Due to their specific life history characteristics, sharks and rays are particularly vulnerable to overexploitation, taking several decades to recover after reaching an overexploitation status. In Portugal elasmobranch fishery results mainly from targeted longlining and bycatch from different fishing gears. During the last decade, the Total Allowable Catches (TACs) of rays have been decreasing, the European Union (EU) banned the capture of some ray species, the Portuguese government implemented both a closed season and a minimum landing size for some rays, and the EU prohibited target fishing for sharks. All these measures may have been highly responsible for the national and local landings reduction. Official landings from the last decade were analyzed, the landed species conservation status was consulted, and structured interviews using a questionnaire were conducted in the most important fishing port in the Portuguese mainland, the port of Sesimbra. Results led us to conclude that fishers’ answers and landings data did not match. It also revealed a lack of awareness by fishers about the state of shark and ray populations, and about some aspects of their biology and ecology, like reproduction season and method. The present study highlights the need to fill in this existing gap in knowledge through the transfer of scientific knowledge and sharing of management responsibilities. Also, we aimed to demonstrate the necessity for awareness and education activities within fishing communities, an essential step to elasmobranch conservation.
Why Are Barnacles Common on Intertidal Rocks but Rare in Rock Pools? Effect of Water Temperature, Salinity, and Continuous Submergence on Barnacle Survival in Indian Ocean Rock Pools
Authors: Buasakaew Nutcha , Chan Benny K. K. , Wangkulangkul Kringpaka
Published: September 2021

Barnacles are less common in rock pools of the rocky intertidal zone than on open rock surfaces adjacent to those pools. Rock pools on the Andaman coastlines of Thailand showed diurnal variations in water temperature, salinity, pH, and dissolved oxygen level, peaking in the afternoon. Multivariate analysis showed that water temperature and salinity (not pH and dissolved oxygen) can affect barnacle abundance in rock pools. The present study tests the hypothesis that a lack of recruitment or pool environmental conditions (continuous submergence, water temperature, and salinity extremes) affect the abundance of barnacles (Chthamalus malayensis and Amphibalanus amphitrite) in rock pools. During the recruitment season, recruits were found in a number of rock pools, but at significantly lower abundances than those in adjacent open rock surfaces. In a laboratory experiment, C. malayensis and A. amphitrite that were continuously submerged had a lower survival (80%) than the controls (simulated tide conditions; >90% survivals). Under different water temperature and salinities treatments, barnacles had low survival (<50%) in the low salinity (0‰) and high temperature treatment (40°C). The present study suggests that C. malayensis and A. amphitrite can recruit into rock pools, and the interplay of continuous submergence, high water temperature and low salinity in rock pools can bring about mortality in barnacles.
Safe in My Garden: Reduction of Mainstream Flow and Turbulence by Macroalgal Assemblages and Implications for Refugia of Calcifying Organisms From Ocean Acidification
Authors: Kregting Louise , Britton Damon , Mundy Craig N. , Hurd Catriona L.
Published: September 2021

Macroalgae, with their various morphologies, are ubiquitous throughout the world’s oceans and provide ecosystem services to a multitude of organisms. Water motion is a fundamental physical parameter controlling the mass transfer of dissolved carbon and nutrients to and from the macroalgal surface, but measurements of flow speed and turbulence within and above macroalgal canopies are lacking. This information is becoming increasingly important as macroalgal canopies may act as refugia for calcifying organisms from ocean acidification (OA); and the extent to which they act as refugia is driven by water motion. Here we report on a field campaign to assess the flow speed and turbulence within and above natural macroalgal canopies at two depths (3 and 6 m) and two sites (Ninepin Point and Tinderbox) in Tasmania, Australia in relation to the canopy height and % cover of functional forms. Filamentous groups made up the greatest proportion (75%) at both sites and depth while foliose groups were more prevalent at 3 than at 6 m. Irrespective of background flows, depth or site, flow speeds within the canopies were <0.03 m s–1 – a ∼90% reduction in flow speeds compared to above the canopy. Turbulent kinetic energy (TKE) within the canopies was up to two orders of magnitude lower (<0.008 m2 s–2) than above the canopies, with higher levels of TKE within the canopy at 3 compared to 6 m. The significant damping effect of flow and turbulence by macroalgae highlights the potential of these ecosystems to provide a refugia for vulnerable calcifying species to OA.
Diets and Seasonal Ingestion Rates of Aurelia coerulea (Cnidaria: Scyphozoa) Polyps by in situ Feeding Experiments in Jiaozhou Bay, China
Authors: Pengpeng Wang , Fang Zhang , Dongjie Guo , Song Sun
Published: September 2021

The benthic scyphopolyp population is an important stage in the scyphozoan lifecycle. Nevertheless, few studies have detailed the natural feeding and quantified the energy flux of polyps based on field research. To better understand the scyphopolyp natural diet and seasonal variation patterns in the ingestion rate, in situ feeding experiments were conducted on Aurelia coerulea polyps in Jiaozhou Bay, China from August 2018 to April 2019. The diet of A. coerulea polyps was determined by gut content analysis. Digestion rates were also measured. Ingestion rates, based on the gut contents and digestion rates, were assessed monthly. Copepods, copepod nauplii, and ciliates were identified in the guts of A. coerulea polyps. Copepods with the bulk of total prey intake in number are an important source of nutrition for A. coerulea polyps in Jiaozhou Bay. Prey capture of A. coerulea polyps (prey polyp–1) varied among months, and was highly dependent upon the abundance of planktonic prey in the habitat. Copepods and copepod nauplii were digested more rapidly as temperature increased. Carbon weight-specific ingestion rate exhibited an obvious seasonal change, with the mean value of 0.13 ± 0.12 μg C μg C–1 d–1. More rapid digestion of prey at higher temperatures and larger prey availability would cause a higher ingestion rate in polyps. Scyphopolyps are widely distributed predators in littoral ecosystems and they may play an important role in plankton–benthos coupling by transferring energy from the water column to the benthos. Massive scyphopolyps blooms may influence pelagic ecosystems.
Correlation: Between Autochthonous Microbial Diversity and Volatile Metabolites During the Fermentation of Nongxiang Daqu
Authors: Deng Yuke , Huang Dan , Han Baolin , Ning Xinqian , Yu Dong , Guo Huixiang , Zou Yufang , Jing Wen , Luo Huibo
Published: September 2021

Daqu is an important saccharifying and fermenting agent. It provides various microorganisms and enzymes for the fermentation of Baijiu and plays a vital role in the formation of Baijiu flavor. However, it is difficult to obtain information on microbial growth and metabolism in time for Daqu production. Therefore, the “Qu Xiang” obtained by smelling is an important index in the traditional production process to evaluate the microbial fermentation in the process of Daqu-making, “Qu Xiang” mainly represents the volatile flavor compounds in Daqu. The microbial diversity and volatile metabolites on 0, 6, 16, and 29 days of the fermentation process were measured using high-throughput sequencing and gas chromatography–mass spectrometry. Significant differences were found in the composition of the microbial community. Pseudomonas, Weissella, Bacillus, and Pelomonas were the main bacterial genera. Alternaria, Rhizopus, and Pichia are the main fungal genera. A total of 32 differential volatile metabolites were detected in samples at four time points using differential metabolic analysis. The correspondence of prevailing microorganisms with differential metabolites distinguished by Spearman correlation and two-way orthogonal partial least square analysis show that Saccharopolyspora exhibited a significant connection for the 12 differential metabolites. A significant positive correlation was observed between Rhizomucor and 13 different metabolites. These findings further understanding of the metabolism of microorganisms in Daqu fermentation and also help to control the microorganisms in the Daqu-making process, to obtain more stable Baijiu products.
Zinc Deficiency, Plasma Fatty Acid Profile and Desaturase Activities in Hemodialysis Patients: Is Supplementation Necessary?
Authors: Takic Marija , Zekovic Milica , Terzic Brankica , Stojsavljevic Aleksandar , Mijuskovic Mirjana , Radjen Slavica , Ristic-Medic Danijela
Published: September 2021

Background: Desaturation and elongation are critical processes in endogenous metabolic fatty acid pathways. Zinc (Zn) is a cofactor for desaturases and elongases enzymes. There is limited evidence regarding the relationships between biomarkers of Zn status, nutritional intake, plasma phospholipid fatty acid profile and clinical outcomes among patients undergoing hemodialysis (HD).

Objective: To examine the relationships between dietary and serum levels of Zn and Cu/Zn ratio and to explore associations of these micronutrients with PUFA profile and estimated desaturase and elongase enzyme activities in serum phospholipids among HD patients.

Methods: This study included 40 adult patients undergoing hemodialysis treatment. Repeated 24-h recalls were applied for dietary intake assessment. Serum concentration of Zn and Cu were determined using inductively coupled plasma mass spectrometry and fatty acid composition by gas-liquid chromatography. Desaturase and elongase activities were calculated from product-precursor fatty acid ratios.

Results: Inadequate dietary Zn intake was found in 55% of HD patients. They all had serum Zn concentration below the reference value of 60 μg/dL (mean 38.8 ± 7.72 μg/dL). Adequate zinc intake was accompanied with significantly higher intake of energy, total fats, SFA, MUFA and proteins. There was no correlation between Zn serum status and Zn intake estimates. Serum Cu/Zn ratio was high, (2.76 ± 0.68), directly and significantly associated with HD period, CRP, BMI, VFA, and inversely with Kt/V, albumin, iron, and iPTH. The n-6/n-3 ratio in plasma phospholipids was elevated (12.25 ± 3.45) and patients with inadequate Zn intake had lower n-3 PUFA intake and status compared to those with adequate intake. Serum Zn concentrations were inversely correlated with linoleic/dihomo-γ-linolenic acid ratio (LA/DGLA) (p = 0.037), related to D6-desaturase activity (p = 0.033) and directly with DGLA relative abundances (p = 0.024). Cu status was inversely associated with EPA level (p = 0.03) and estimates of elongase activity (p = 0.001). Furthermore, positive relationship was found between the Cu/Zn ratio and determined elongase value (p = 0.01).

Conclusion: Findings of this study underpin the high prevalence of Zn deficiency and inadequate n-3 PUFA intake and status among subjects undergoing HD. The results obtained indicate that the assessment of Zn status should be a standard parameter of nutritional status screening in HD patients while emphasizing the importance of Cu/Zn determination. Although further research is warranted, Zn and-n-3 PUFA supplementation in HD patients might be beneficial for the prevention and attenuation of adverse health outcomes
Mechanisms Governing Metabolic Heterogeneity in Breast Cancer and Other Tumors
Authors: Patra Sayani , Elahi Naveed , Armorer Aaron , Arunachalam Swathi , Omala Joshua , Hamid Iman , Ashton Anthony W. , Joyce David , Jiao Xuanmao , Pestell Richard G.
Published: September 2021

Reprogramming of metabolic priorities promotes tumor progression. Our understanding of the Warburg effect, based on studies of cultured cancer cells, has evolved to a more complex understanding of tumor metabolism within an ecosystem that provides and catabolizes diverse nutrients provided by the local tumor microenvironment. Recent studies have illustrated that heterogeneous metabolic changes occur at the level of tumor type, tumor subtype, within the tumor itself, and within the tumor microenvironment. Thus, altered metabolism occurs in cancer cells and in the tumor microenvironment (fibroblasts, immune cells and fat cells). Herein we describe how these growth advantages are obtained through either “convergent” genetic changes, in which common metabolic properties are induced as a final common pathway induced by diverse oncogene factors, or “divergent” genetic changes, in which distinct factors lead to subtype-selective phenotypes and thereby tumor heterogeneity. Metabolic heterogeneity allows subtyping of cancers and further metabolic heterogeneity occurs within the same tumor mass thought of as “microenvironmental metabolic nesting”. Furthermore, recent findings show that mutations of metabolic genes arise in the majority of tumors providing an opportunity for the development of more robust metabolic models of an individual patient’s tumor. The focus of this review is on the mechanisms governing this metabolic heterogeneity in breast cancer.
Recent Advances in Experimental Dendritic Cell Vaccines for Cancer
Authors: Filin Ivan Y. , Kitaeva Kristina V. , Rutland Catrin S. , Rizvanov Albert A. , Solovyeva Valeriya V.
Published: September 2021

The development of immunotherapeutic methods for the treatment of oncological diseases have made it possible to improve the effectiveness of standard therapies. There was no breakthrough after first using of personalized therapeutic vaccines based on dendritic cells in clinical practice. A deeper study of the biology of dendritic cells, as well as the use of new approaches and agents for antigenic work, have made it possible to expand the field of application of dendritic cell (DC) vaccines and improve the indicators of cancer patients. In addition, the low toxicity of DC vaccines in clinical trials makes it possible to use promising predictions of their applicability in wider clinical practice. This review examines new approaches and recent advances of the DC vaccine in clinical trials.
Immunotherapy in Adolescents and Young Adults: What Remains in Cancer Survivors?
Authors: Tanda Enrica Teresa , Croce Elena , Spagnolo Francesco , Zullo Lodovica , Spinaci Stefano , Genova Carlo , Rossi Giovanni
Published: September 2021

Immunotherapy has changed the landscape of treatments for advanced disease in multiple neoplasms. More and more patients are long survivors from a metastatic disease. Most recently, the extension of indications and evidence of efficacy in early disease settings, such as the adjuvant and neoadjuvant setting in breast cancer, lung cancer, glioma, and gastric cancer, places more attention on what happens to patients who survive cancer. In particular, we evaluated what happens in young patients, a population in whom some immune-related effects are still poorly described. Immunotherapy is already a reality in early disease settings and the scientific community is lagging in describing what to expect in adolescent and young adult (AYA) patients. For instance, the impact of these therapies on female and male fertility is not clear, similarly to the interaction that may occur between these drugs and pregnancy. This review aims to highlight these little-known topics that are difficult to evaluate in ad hoc studies.
PPAR-γ Modulators as Current and Potential Cancer Treatments
Authors: Chi Tiange , Wang Mina , Wang Xu , Yang Ke , Xie Feiyu , Liao Zehuan , Wei Peng
Published: September 2021

Worldwide, cancer has become one of the leading causes of mortality. Peroxisome Proliferator-Activated Receptors (PPARs) is a family of critical sensors of lipids as well as regulators of diverse metabolic pathways. They are also equipped with the capability to promote eNOS activation, regulate immunity and inflammation response. Aside from the established properties, emerging discoveries are also made in PPAR’s functions in the cancer field. All considerations are given, there exists great potential in PPAR modulators which may hold in the management of cancers. In particular, PPAR-γ, the most expressed subtype in adipose tissues with two isoforms of different tissue distribution, has been proven to be able to inhibit cell proliferation, induce cell cycle termination and apoptosis of multiple cancer cells, promote intercellular adhesion, and cripple the inflamed state of tumor microenvironment, both on transcriptional and protein level. However, despite the multi-functionalities, the safety of PPAR-γ modulators is still of clinical concern in terms of dosage, drug interactions, cancer types and stages, etc. This review aims to consolidate the functions of PPAR-γ, the current and potential applications of PPAR-γ modulators, and the challenges in applying PPAR-γ modulators to cancer treatment, in both laboratory and clinical settings. We sincerely hope to provide a comprehensive perspective on the prospect of PPAR-γ applicability in the field of cancer treatment.
Prior Compensation Algorithm for Cerenkov Luminescence Tomography From Single-View Measurements
Authors: Wang Lin , He Xiaowei , Yu Jingjing
Published: September 2021

Cerenkov luminescence tomography (CLT) has attracted much attention because of the wide clinically-used probes and three-dimensional (3D) quantification ability. However, due to the serious morbidity of 3D optical imaging, the reconstructed images of CLT are not appreciable, especially when single-view measurements are used. Single-view CLT improves the efficiency of data acquisition. It is much consistent with the actual imaging environment of using commercial imaging system, but bringing the problem that the reconstructed results will be closer to the animal surface on the side where the single-view image is collected. To avoid this problem to the greatest extent possible, we proposed a prior compensation algorithm for CLT reconstruction based on depth calibration strategy. This method takes full account of the fact that the attenuation of light in the tissue will depend heavily on the depth of the light source as well as the distance between the light source and the detection plane. Based on this consideration, a depth calibration matrix was designed to calibrate the attenuation between the surface light flux and the density of the internal light source. The feature of the algorithm was that the depth calibration matrix directly acts on the system matrix of CLT reconstruction, rather than modifying the regularization penalty items. The validity and effectiveness of the proposed algorithm were evaluated with a numerical simulation and a mouse-based experiment, whose results illustrated that it located the radiation sources accurately by using single-view measurements.
Immune Checkpoint Inhibitor–Associated Tumor Lysis Syndrome: A Real-World Pharmacovigilance Study
Authors: Wang Li , Li Xiaolin , Zhao Bin , Mei Dan , Jiang Jiandong , Duan Jingli
Published: September 2021

Introduction: Immune checkpoint inhibitors (ICIs) have substantially improved the clinical outcomes of various malignancies. However, the adverse event of tumor lysis syndrome (TLS) has not been included in the National Comprehensive Cancer Network guidelines or drug inserts. In this study, we aimed to establish the relationship between ICI therapies and TLS events using data from a real-world pharmacovigilance database.

Methods: The MedDRA terms of TLS and both generic and brand names of ICIs were retrieved from the FDA Adverse Event Reporting System. Four frequentist algorithms were employed to confirm the association between the TLS and the ICI regimens, involving anti-cytotoxic T lymphocyte antigen-4 (anti-CTLA-4), anti–programmed death receptor-1 (PD-1)/programmed cell death 1 ligand 1 (PD-L1), and anti-(CTLA-4 + PD-1). A descriptive and statistical analysis was performed according to the case information.

Results: One hundred sixty-four TLS cases, where patients underwent anti-CTLA-4 (n = 14), anti-(PD-1)/(PD-L1) (n = 113), or anti-(CTLA-4 + PD-1) (n = 37) therapies, were collected between the first quarter of 2004 and the fourth quarter of 2020. The most coverage-reporting year, age-group, sex, reporter, region, country, and indication were 2020 (n = 62), 60–74 years (n = 65), males (n = 105), physician (n = 66), Asia (n = 80), Japan (n = 67), and lung and thymus malignancies (n = 40), respectively. The median TLS onset time associated with anti-CTLA-4, anti-(PD-1)/(PD-L1), and anti-(CTLA-4 + PD-1) therapies was 6 (IQR: 2–39.5), 9 (IQR: 2–40), and 20 (IQR: 7.5–37.75) days, respectively. Mortality distribution of 71 reported death outcomes among three groups was statistically significant. All four algorithm signal values of anti-(CTLA-4 + PD-1) were higher than those of anti-CTLA-4 and anti-(PD-1)/(PD-L1).

Conclusion: Elderly male patients with lung and thymus malignancies are frequently predisposed to TLS. ICI therapies could induce TLS in both solid and hematological malignancies. The rapid onset time and poor outcomes of patients prompt caution from health-care professionals.
Research Progress About Glioma Stem Cells in the Immune Microenvironment of Glioma
Authors: Li Xiangyu , Liu Ming , Zhao Junfeng , Ren Tong , Yan Xin , Zhang Lijun , Wang Xun
Published: September 2021

Gliomas are the most common primary tumors of the central nervous system. Due to the existence of the blood-brain barrier and its unique regional immune characteristics, the study of the immune microenvironment of gliomas is particularly important. Glioma stem cells are an important cause of initiating glioma, promoting tumor progression and leading to tumor recurrence. Immunotherapeutic strategies targeting glioma stem cells have become the focus of current research. This paper will focus on the research progress of glioma stem cells in the immune microenvironment of glioma to provide the basis for the immunotherapy of glioma.
Enhanced Raman Spectra in Femtosecond Laser Inscribed Yb:YVO4 Channel Waveguides
Authors: Bao Yi-Fei , Liu Tao , Kong Wei-Jin , Luo Hao-Qi , Liu Yong , Liu Fei-Ran , Cheng Lin
Published: September 2021

The femtosecond laser writing with double-line technique was employed to fabricate buried channel waveguides with different widths in Yb:YVO4 crystal. Model profiles of the waveguides were captured using the endface coupling setup at the wavelength of 633 nm under TE and TM polarization. Furthermore, the confocal micro-Raman spectra in bulk and waveguide areas were studied at the wavelength of 633 nm. The enhanced Raman intensity were performed in waveguide areas.
Genotyping-by-Sequencing Based Genetic Mapping Identified Major and Consistent Genomic Regions for Productivity and Quality Traits in Peanut
Authors: Jadhav Mangesh P. , Gangurde Sunil S. , Hake Anil A. , Yadawad Arati , Mahadevaiah Supriya S. , Pattanashetti Santosh K. , Gowda M. V. Channabyre , Shirasawa Kenta , Varshney Rajeev K. , Pandey Manish K. , Bhat Ramesh S.
Published: September 2021

With an objective of identifying the genomic regions for productivity and quality traits in peanut, a recombinant inbred line (RIL) population developed from an elite variety, TMV 2 and its ethyl methane sulfonate (EMS)-derived mutant was phenotyped over six seasons and genotyped with genotyping-by-sequencing (GBS), Arachis hypogaea transposable element (AhTE) and simple sequence repeats (SSR) markers. The genetic map with 700 markers spanning 2,438.1 cM was employed for quantitative trait loci (QTL) analysis which identified a total of 47 main-effect QTLs for the productivity and oil quality traits with the phenotypic variance explained (PVE) of 10–52% over the seasons. A common QTL region (46.7–50.1 cM) on Ah02 was identified for the multiple traits, such as a number of pods per plant (NPPP), pod weight per plant (PWPP), shelling percentage (SP), and test weight (TW). Similarly, a QTL (7.1–18.0 cM) on Ah16 was identified for both SP and protein content (PC). Epistatic QTL (epiQTL) analysis revealed intra- and inter-chromosomal interactions for the main-effect QTLs and other genomic regions governing these productivity traits. The markers identified by a single marker analysis (SMA) mapped to the QTL regions for most of the traits. Among the five potential candidate genes identified for PC, SP and oil quality, two genes (Arahy.7A57YA and Arahy.CH9B83) were affected by AhMITE1 transposition, and three genes (Arahy.J5SZ1I, Arahy.MZJT69, and Arahy.X7PJ8H) involved functional single nucleotide polymorphisms (SNPs). With major and consistent effects, the genomic regions, candidate genes, and the associated markers identified in this study would provide an opportunity for gene cloning and genomics-assisted breeding for increasing the productivity and enhancing the quality of peanut.
The Expression of IbMYB1 Is Essential to Maintain the Purple Color of Leaf and Storage Root in Sweet Potato [Ipomoea batatas (L.) Lam]
Authors: Zhang Daowei , Tan Yongjun , Dong Fang , Zhang Ya , Huang Yanlan , Zhou Yizhou , Zhao ZhiJian , Yin Qin , Xie Xuehua , Gao Xiewang , Zhang Chaofan , Tu Naimei
Published: September 2021

IbMYB1 was one of the major anthocyanin biosynthesis regulatory genes that has been identified and utilized in purple-fleshed sweet potato breeding. At least three members of this gene, namely, IbMYB1-1, -2a, and -2b, have been reported. We found that IbMYB1-2a and -2b are not necessary for anthocyanin accumulation in a variety of cultivated species (hexaploid) with purple shoots or purplish rings/spots of flesh. Transcriptomic and quantitative reverse transcription PCR (RT-qPCR) analyses revealed that persistent and vigorous expression of IbMYB1 is essential to maintain the purple color of leaves and storage roots in this type of cultivated species, which did not contain IbMYB1-2 gene members. Compared with IbbHLH2, IbMYB1 is an early response gene of anthocyanin biosynthesis in sweet potato. It cannot exclude the possibility that other MYBs participate in this gene regulation networks. Twenty-two MYB-like genes were identified from 156 MYBs to be highly positively or negatively correlated with the anthocyanin content in leaves or flesh. Even so, the IbMYB1 was most coordinately expressed with anthocyanin biosynthesis genes. Differences in flanking and coding sequences confirm that IbMYB2s, the highest similarity genes of IbMYB1, are not the members of IbMYB1. This phenomenon indicates that there may be more members of IbMYB1 in sweet potato, and the genetic complementation of these members is involved in the regulation of anthocyanin biosynthesis. The 3′ flanking sequence of IbMYB1-1 is homologous to the retrotransposon sequence of TNT1-94. Transposon movement is involved in the formation of multiple members of IbMYB1. This study provides critical insights into the expression patterns of IbMYB1, which are involved in the regulation of anthocyanin biosynthesis in the leaf and storage root. Notably, our study also emphasized the presence of a multiple member of IbMYB1 for genetic improvement.
Genetic Gain in Yield and Associated Changes in Agronomic Traits in Wheat Cultivars Developed Between 1900 and 2016 for Irrigated Ecosystems of Northwestern Plain Zone of India
Authors: Yadav Rajbir , Gupta Soma , Gaikwad Kiran B. , Bainsla Naresh Kumar , Kumar Manjeet , Babu Prashanth , Ansari Rihan , Dhar Narain , Dharmateja Palaparthi , Prasad Rajender
Published: September 2021

Knowledge about the yield gain over the years due to associated changes in the yield component traits is essential for a critical understanding of yield-limiting factors. To estimate genetic gain in grain yield (GY) and component agronomic traits of wheat varieties released between 1900 and 2016 for northwestern plain zone (NWPZ) of India and to identify agronomic and/or genetic basis of the realized gains, two sets of wheat varieties comprising mega varieties and two recently developed varieties were evaluated under timely sown, tilled, and early sown conservation agriculture (CA) conditions for four consecutive years under irrigated conditions. The average annual genetic gain in GY since 1,905 under timely sown irrigated conditions was found to be 0.544% yr−1over the average of all varieties and 0.822% yr−1(24.27 kg ha−1yr−1) over the first released variety, NP4. The realized mean yield increased from 2,950 kg ha−1of the variety NP4 released in 1,905–5,649 kg ha−1of HD3086 released in 2014. Regression analysis revealed a linear reduction in height and peduncle length (PL) over the years with a simultaneous and linear increase in biomass at the rate of 43.9 kg ha−1yr−1or relatively at 0.368% yr−1mainly because of delayed heading and increased crop duration. Regression analysis showed no linear trend for tiller number and thousand-grain weight (TGW). Though harvest index (HI) was found to linearly increase relatively at the rate of 0.198% per annum, polynomial regression improved the fitness of data with the indication of no increase in HI since 1982. Interestingly, genetic gain evaluation under early sown CA conditions for 4 years showed similar relative gain (RG) [a relative improvement in varieties across breeding periods (BP)] (0.544% yr−1) but with a higher absolute value (29.28 kg ha−1yr−1). Major mega varieties like Kalyan Sona, HD2009, PBW 343, HD2967, and HD3086, which occupied a comparatively larger area, were found highly plastic to the improvements in the production environment under timely sown conditions.
Novel Expressed Sequence Tag-Derived and Other Genomic Simple Sequence Repeat Markers Revealed Genetic Diversity in Ethiopian Finger Millet Landrace Populations and Cultivars
Authors: Brhane Haftom , Haileselassie Teklehaimanot , Tesfaye Kassahun , Hammenhag Cecilia , Ortiz Rodomiro , Abreha Kibrom B. , Geleta Mulatu
Published: September 2021

Finger millet (Eleusine coracana (L.) Geartn.) is a self-pollinating amphidiploid crop cultivated with minimal input for food and feed, as well as a source of income for small-scale farmers. To efficiently assess its genetic diversity for conservation and use in breeding programs, polymorphic DNA markers that represent its complex tetraploid genome have to be developed and used. In this study, 13 new expressed sequence tag-derived simple sequence repeat (EST-SSR) markers were developed based on publicly available finger millet ESTs. Using 10 polymorphic SSR markers (3 genomic and 7 novel EST-derived), the genetic diversity of 55 landrace accessions and 5 cultivars of finger millet representing its major growing areas in Ethiopia was assessed. In total, 26 alleles were detected across the 10 loci, and the average observed number of alleles per locus was 5.6. The polymorphic information content (PIC) of the loci ranged from 0.045 (Elco-48) to 0.71 (UGEP-66). The level of genetic diversity did not differ much between the accessions with the mean gene diversity estimates ranging only from 0.44 (accession 216054) to 0.68 (accession 237443). Similarly, a narrow range of variation was recorded at the level of regional states ranging from 0.54 (Oromia) to 0.59 (Amhara and Tigray). Interestingly, the average gene diversity of the landrace accessions (0.57) was similar to that of the cultivars (0.58). The analysis of molecular variance (AMOVA) revealed significant genetic variation both within and among accessions. The variation among the accessions accounted for 18.8% of the total variation (FST = 0.19; P < 0.001). Similarly, significant genetic variation was obtained among the geographic regions, accounting for 6.9% of the total variation (P < 0.001). The results of the cluster, principal coordinate, and population structure analyses suggest a poor correlation between the genetic makeups of finger millet landrace populations and their geographic regions of origin, which in turn suggests strong gene flow between populations within and across geographic regions. This study contributed novel EST-SSR markers for their various applications, and those that were monomorphic should be tested in more diverse finger millet genetic resources.
Xylan Is Critical for Proper Bundling and Alignment of Cellulose Microfibrils in Plant Secondary Cell Walls
Authors: Crowe Jacob D. , Hao Pengchao , Pattathil Sivakumar , Pan Henry , Ding Shi-You , Hodge David B. , Jensen Jacob Krüger
Published: September 2021

Plant biomass represents an abundant and increasingly important natural resource and it mainly consists of a number of cell types that have undergone extensive secondary cell wall (SCW) formation. These cell types are abundant in the stems of Arabidopsis, a well-studied model system for hardwood, the wood of eudicot plants. The main constituents of hardwood include cellulose, lignin, and xylan, the latter in the form of glucuronoxylan (GX). The binding of GX to cellulose in the eudicot SCW represents one of the best-understood molecular interactions within plant cell walls. The evenly spaced acetylation and 4-O-methyl glucuronic acid (MeGlcA) substitutions of the xylan polymer backbone facilitates binding in a linear two-fold screw conformation to the hydrophilic side of cellulose and signifies a high level of molecular specificity. However, the wider implications of GX–cellulose interactions for cellulose network formation and SCW architecture have remained less explored. In this study, we seek to expand our knowledge on this by characterizing the cellulose microfibril organization in three well-characterized GX mutants. The selected mutants display a range of GX deficiency from mild to severe, with findings indicating even the weakest mutant having significant perturbations of the cellulose network, as visualized by both scanning electron microscopy (SEM) and atomic force microscopy (AFM). We show by image analysis that microfibril width is increased by as much as three times in the severe mutants compared to the wild type and that the degree of directional dispersion of the fibrils is approximately doubled in all the three mutants. Further, we find that these changes correlate with both altered nanomechanical properties of the SCW, as observed by AFM, and with increases in enzymatic hydrolysis. Results from this study indicate the critical role that normal GX composition has on cellulose bundle formation and cellulose organization as a whole within the SCWs.
Nonhuman and Nonhuman-Human Communication: Some Issues and Questions
Authors: Pepperberg Irene M.
Published: September 2021

Deciphering nonhuman communication – particularly nonhuman vocal communication – has been a longstanding human quest. We are, for example, fascinated by the songs of birds and whales, the grunts of apes, the barks of dogs, and the croaks of frogs; we wonder about their potential meaning and their relationship to human language. Do these utterances express little more than emotional states, or do they convey actual bits and bytes of concrete information? Humans’ numerous attempts to decipher nonhuman systems have, however, progressed slowly. We still wonder why only a small number of species are capable of vocal learning, a trait that, because it allows for innovation and adaptation, would seem to be a prerequisite for most language-like abilities. Humans have also attempted to teach nonhumans elements of our system, using both vocal and nonvocal systems. The rationale for such training is that the extent of success in instilling symbolic reference provides some evidence for, at the very least, the cognitive underpinnings of parallels between human and nonhuman communication systems. However, separating acquisition of reference from simple object-label association is not a simple matter, as reference begins with such associations, and the point at which true reference emerges is not always obvious. I begin by discussing these points and questions, predominantly from the viewpoint of someone studying avian abilities. I end by examining the question posed by Premack: do nonhumans that have achieved some level of symbolic reference then process information differently from those that have not? I suggest the answer is likely “yes,” giving examples from my research on Grey parrots (Psittacus erithacus).
Assessing Lexical Psychological Properties in Second Language Production: A Dynamic Semantic Similarity Approach
Authors: Sun Kun , Lu Xiaofei
Published: September 2021

Previous studies of the lexical psycholinguistic properties (LPPs) in second language (L2) production have assessed the degree of an LPP dimension of an L2 corpus by computing the mean ratings of unique content words in the corpus for that dimension, without considering the possibility that learners at different proficiency levels may perceive the degree of that dimension of the same words differently. This study extended a dynamic semantic similarity algorithm to estimate the degree of five different LPP dimensions of several sub-corpora of the Education First-Cambridge Open Language Database representing L2 English learners at different proficiency levels. Our findings provide initial evidence for the validity of the algorithm for assessing the LPPs in L2 production and contribute useful insights into between-proficiency relationships and cross-proficiency differences in the LPPs in L2 production as well as the relationships among different LPP dimensions.
An Exploration of the Application of Step Counter-Based Physical Activity Promotion Programs in Patients With Chronic Obstructive Pulmonary Disease: A Systematic Review
Authors: Han Xiaoyu , Li Peijun , Yang Yahui , Liu Xiaodan , Xia Jun , Wu Weibing
Published: September 2021

Objective: This paper aimed to systematically review the application methods and components of step counter-based physical activity (PA) promotion programs in patients with chronic obstructive pulmonary disease (COPD). The effects of longer-duration (≥12 weeks) programs on PA, exercise capacity, quality of life, and dyspnea were discussed.

Methods: This review was performed in accordance with the preferred reporting items for systematic reviews and meta-analysis. Online data resources PubMed, Web of Science, Embase, and EBSCO were searched. The publication year was limited between January 2000 to August 2020. All randomized controlled trials with ≥12-week duration of step counter-based PA promotion programs of COPD were included. Two researchers independently assessed the quality of the included studies and extracted their characteristics.

Results: Nine studies involving 1,450 participants were included. Step counters, counseling, exercise goals, diaries, and tele-communicational approaches were common components of these programs. The PA feedback tools were mostly pedometers (n = 8), whereas accelerometers were often used as assessment tools of PA (n = 5). All studies implemented counseling: five applied behavioral change theories, and three reported motivational interview techniques simultaneously. Six studies reported detailed exercise goals. The usual exercise goal was to reach a total of 8,000–10,000 steps/day. Three research studies used diaries, and five applied tele-communication approaches to deliver interventions. The programs could be implemented alone (n = 4), in combination with exercise training (n = 2), or with pulmonary rehabilitation (n = 2). All studies showed a significant increase in the PA (≥793 steps/day). Three studies observed a significant improvement in exercise capacity (≥13.4 m), and two reported a significant increase in the quality of life (p < 0.05). No study showed significant between-group differences in dyspnea.

Conclusion: There are a few studies assessing the impact of long-duration (≥12 weeks) step counter-based interventions in COPD, with different methodologies, although all studies included counseling and exercise goal setting. These interventions seem to have a positive effect on PA. A few studies also showed benefit on exercise capacity and quality of life.
Comparing Fear of COVID-19 and Preventive COVID-19 Infection Behaviors Between Iranian and Taiwanese Older People: Early Reaction May Be a Key
Authors: Pakpour Amir H. , Liu Chieh-hsiu , Hou Wen-Li , Chen Yu-Pin , Li Yueh-Ping , Kuo Yi-Jie , Lin Chung-Ying , Scarf Damian
Published: September 2021

This study assessed fear of the novel coronavirus-2019 (COVID-19), preventive COVID-19 infection behaviors, and the association between fear of COVID-19 and preventive COVID-19 infection behaviors among older people in Iran and Taiwan. Older people aged over 60 years (n= 144 for Iranians and 139 for Taiwanese) completed the Fear of COVID-19 Scale (FCV-19S) and two items on preventive COVID-19 infection behaviors (i.e., hand washing and mouth covering when sneezing). Iranian older people had a significantly higher level of fear of COVID-19 than did Taiwanese older people. Moreover, Iranian older people had significantly lower frequencies of preventive COVID-19 infection behaviors than did Taiwanese older people. Different timings in implementing COVID-19 infection control policies in Iran and Taiwan may explain why Iranian older people had greater fear of COVID-19 and lower preventive COVID-19 infection behaviors than did Taiwanese older people.
A Comprehensive Review of Nuclear-Renewable Hybrid Energy Systems: Status, Operation, Configuration, Benefit, and Feasibility
Authors: Arefin Md Arman , Islam Mohammad Towhidul , Rashid Fazlur , Mostakim Khodadad , Masuk Nahid Imtiaz , Islam Md. Hasan Ibna
Published: September 2021

One of the biggest concerns of the present century is energy security and climate change. Further, studies suggest that there would be a huge lack of fossil fuels in near future. Moreover, in terms of cleaner production, the most popular and practiced way of power generation is renewable energy sources which are intermittent in nature, require large land area, and also dependent on geographic positions and climatic conditions. Besides, nuclear energy is also having some limitations including government policies and public apprehensions. To overcome these hurdles, these two carbon-free technologies can be integrated and form a nuclear-renewable hybrid energy system (N-R-HES). Literature related to the proposed systems is extremely rare and the systems are not yet well-developed. Keeping that into concern, this paper discusses the operation, status, prospects, and benefits of N-R-HES. Various possible integration techniques along with their operation are discussed in detail. Moreover, six aspects of interconnections are identified: electrical, thermal, chemical, mechanical, hydrogen, and information. The paper also discusses the reactor licensing, permitting procedures along the different benefits of N-R-HES. Additionally, research limitations and needs are identified for further exploration of the topic throughout the paper.
Consumer Perceptions, Behaviors, and Knowledge of Food Waste in a Rural American State
Authors: Ahmed Selena , Stewart Alyssa , Smith Erin , Warne Teresa , Byker Shanks Carmen
Published: September 2021

Understanding consumer knowledge, attitudes, and behaviors towards food waste is critical for informing evidence-based programs to advance sustainable food systems. A lack of knowledge regarding consumer food waste at the local level limits the ability to inform place-based solutions that are locally relevant. We administered an online survey to examine consumer perceptions, behaviors, and knowledge of food waste at the household level in Montana, a rural state in the United States. The majority of surveyed participants (58%) reported that they waste 10% or less of procured food. Almost half the participants (48%) are willing to take additional action to reduce food waste. Social factors including guilt and setting a good example were found to be greater motivators for reducing food waste compared to economic and environmental factors. Most survey participants (80%) perceive it would not be difficult to notably reduce their household's food waste. Overall, participants' reporting of their household's food waste quantity is lower than national quantities while their willingness to reduce food waste was higher than findings from a national survey. This study highlights the need for place-based solutions that are locally relevant to reduce household food waste towards enhancing the sustainability of food systems for supporting planetary health.
Trace Mineral Nutrition of Grazing Beef Cattle
Authors: Arthington John D. , Ranches Juliana
Published: September 2021

The trace mineral requirements of grazing beef cattle are often complicated by different environmental factors, such as the lack of specific trace minerals or the presence of trace mineral antagonists in forage. Nearly every region of the world has specific implications related to trace mineral nutrition of grazing cattle. Since forage is the most significant contributor to trace mineral nutrition, it is important to consider the concentrations of trace minerals and antagonists and how they may impact the performance of cattle consuming them. This review attempts to provide an update on the trace minerals commonly found to be inadequate in forage, supplementation strategies to address deficiency including a discussion on supplemental trace mineral source, and the complications presented by mineral antagonists. Although the review focuses on beef cattle grazing systems of the United States, the information herein is derived from both extensive native range and intensive planted pasture.
Polyphenols and IUGR Pregnancies: Intrauterine Growth Restriction and Hydroxytyrosol Affect the Development and Neurotransmitter Profile of the Hippocampus in a Pig Model
Authors: Yeste Natalia , Gómez Néstor , Vázquez-Gómez Marta , García-Contreras Consolación , Pumarola Martí , González-Bulnes Antonio , Bassols Anna
Published: September 2021

Intrauterine growth restriction (IUGR) refers to poor growth of a fetus during pregnancy due to deficient maternal nutrition or oxygen supply. Supplementation of a mother’s diet with antioxidants, such as hydroxytyrosol (HTX), has been proposed to ameliorate the adverse phenotypes of IUGR. In the present study, sows were treated daily with or without 1.5 mg of HTX per kilogram of feed from day 35 of pregnancy (at 30% of the total gestational period), and fetuses were sampled at day 100 of gestation. Fetuses were classified as normal body weight (NBW) or low body weight (LBW) as a consequence of IUGR, constituting four groups: NBW-Control, NBW-HTX, LBW-Control, and LBW-HTX. The brain was removed, and the hippocampus, amygdala, and prefrontal cortex were rapidly dissected. Neuronal markers were studied by immunohistochemistry, and a decrease in the number of mature neurons in the hippocampal Cornu Ammonis subfield 1 (CA1) and the Dentate Gyrus (DG) regions was observed in LBW fetuses together with a higher number of immature neurons and other alterations in neuronal morphology. Furthermore, IUGR conditions altered the neurotransmitter (NT) profile, since an increase in the serotonin (5-HT) pathway was observed in LBW fetuses. Supplementation with HTX was able to reverse the morphological and neurochemical changes, leading both characteristics to values similar to those of NBW fetuses.