bluuebunny/crossref_metadata_2025 huggingface dataset:
Protectability of IBMQ Qubits by Dynamical Decoupling Technique
Authors: Mena López Arturo , Wu Lian-Ao
Published: December 2022

We study the current effectiveness of the dynamical decoupling technique on a publicly accessible IBM quantum computer (IBMQ). This technique, also known as bang-bang decoupling or dynamical symmetrization, consists of applying sequences of pulses for protecting a qubit from decoherence by symmetrizing the qubit–environment interactions. Works in the field have studied sequences with different symmetries and carried out tests on IBMQ devices typically considering single-qubit states. We show that the simplest universal sequences can be interesting for preserving two-qubit states on the IBMQ device. For this, we considered a collection of single-qubit and two-qubit states. The results indicate that a simple dynamical decoupling approach using available IBMQ pulses is not enough for protecting a general single-qubit state without further care. Nevertheless, the technique is beneficial for the Bell states. This encouraged us to study logical qubit encodings such as |0⟩L≡|01⟩,|1⟩L≡|10⟩, where a quantum state has the form |ψab⟩=a|0⟩L+b|1⟩L. Thus, we explored the effectiveness of dynamical decoupling with a large set of two-qubit |ψab⟩ states, where a and b are real amplitudes. With this, we also determined that the |ψab⟩ states most benefiting from this dynamical decoupling approach and slowed down the decay of their survival probability.
Fast Calculation of the Derivatives of Bessel Functions with Respect to the Parameter and Applications
Authors: Li Aijuan , Qin Huizeng
Published: December 2022

In this paper, the fast algorithms of the derivatives of Bessel functions with respect to the parameter are obtained. Based on these fast algorithms, we discuss the calculations of the derivatives of the functions related to the heterogeneous Bessel differential equation, such as Anger, Weber, Struve and modified Struve functions. In addition, the fast calculation of some integrals related to these functions are obtained. At last, numerical examples show the algorithms given in this paper are fast and high precision.
NikshayChain: A Blockchain-Based Proposal for Tuberculosis Data Management in India
Authors: Hiwale Madhuri , Varadarajan Vijayakumar , Walambe Rahee , Kotecha Ketan
Published: December 2022

A recent development in the Internet of Things (IoT) has accelerated the application of IoT-based solutions in healthcare. Next-Gen networks and IoT, supported by the development of technologies such as Artificial Intelligence (AI) and blockchain, have propelled the growth of e-health applications. However, there are some unique challenges in the widespread acceptance of IoT in healthcare. Safe storage, transfer, authorized access control, and the privacy and security aspects of patient data management are crucial barriers to the widespread adoption of IoT in healthcare. This makes it necessary to identify current issues in the various health data management systems to develop novel healthcare solutions. As a case study, this work considers a scheme launched by the Government of India for tuberculosis care called Nikshay Poshan Yojana (NPY). It is a web-based Direct Benefit Transfer scheme to provide a nutritional incentive of INR 500/- per month to all tuberculosis patients. The main objective of this work is to identify the current implementation challenges of the NPY scheme from patient and healthcare stakeholder perspectives and proposes a blockchain-based architecture called NikshayChain for sharing patient medical reports and bank details among several healthcare stakeholders within or across Indian cities. The proposed architecture accelerates healthcare stakeholder productivity by reducing workload and overall costs while ensuring effective data management. This architecture can significantly improve medical care, incentive transfer, and data verification, propelling the use of e-health applications.
Spirolides in Bivalve Mollusk of the Galician (NW Spain) Coast: Interspecific, Spatial, Temporal Variation and Presence of an Isomer of 13-Desmethyl Spirolide C
Authors: Blanco Juan , Arévalo Fabiola , Moroño Ángeles , Correa Jorge , Rossignoli Araceli E. , Lamas Juan Pablo
Published: December 2022

Spirolides are cyclic imines whose risks to human health have not been sufficiently evaluated. To determine the possible impact of these compounds in Galicia (NW Spain), their presence and concentration in bivalve mollusk were studied from 2014 to 2021. Only 13-desmethyl spirolide C (13desmSPXC) and an isomer have been detected, and always at low concentrations. Mussel, Mytilus galloprovincialis, was the species which accumulated more spirolides, but the presence of its isomer was nearly restricted to cockle, Cerastoderma edule, and two clam species, Venerupis corrugata and Polititapes rhomboides. On average, the highest 13desmSPXC levels were found in autumn-winter, while those of its isomer were recorded in spring-summer. Both compounds showed decreasing trends during the study period. Geographically, the concentration tends to decrease from the southern to the north-eastern locations, but temporal variability predominates over spatial variability.
Shear Wave Velocity to Evaluate the Effect of Botulinum Toxin on Post-Stroke Spasticity of the Lower Limb
Authors: Hasegawa Yuki , Niimi Masachika , Hara Takatoshi , Sakurai Yoshihiro , Soshi Shigeru , Udaka Jun , Abo Masahiro
Published: December 2022

(1) Background: The evaluation of muscles with spasticity using ultrasound elastography has attracted attention recently, and the shear wave velocity (SWV) technique can measure the mechanical properties of tissues objectively and quantitatively. The purpose of this study was to evaluate the effect of using SWV to assess the effect of Botulinum toxin type A (BoNT-A) treatment in adult patients with post-stroke lower limb spasticity. (2) Methods: We assessed the modified Ashworth Scale, the modified Tardieu Scale, and SWV at rest and after stretching before and at 1 month after BoNT-A treatment in 10 adult participants with post-stroke lower limb spasticity. (3) Results: Significant changes in SWV of the ankle joint in maximum dorsiflexion to the extent possible (SWV stretched) were observed after BoNT-A treatment. SWV stretched was positively correlated with joint range of motion. Participants whose joint range of motion did not improve (i.e., gastrocnemius medialis muscle (GCM) extension distance did not change) had significantly more reductions in SWV stretched after BoNT-A treatment. (4) Conclusions: Our results suggest that the SWV measurements may serve as a quantitative assessment to determine the effect of the BoNT-A treatment in adult stroke patients. SWV measurements to assess GCM spasticity should consider the effects of tension, material properties and activation level of muscles. The challenge is to measure SWV with matching limb positions in patients without contractures.
The Effective Fluid Approach for Modified Gravity and Its Applications
Authors: Nesseris Savvas
Published: December 2022

In this review, we briefly summarize the so-called effective fluid approach, which is a compact framework that can be used to describe a plethora of different modified gravity models as general relativity (GR) and a dark energy (DE) fluid. This approach, which is complementary to the cosmological effective field theory, has several benefits, as it allows for the easier inclusion of most modified gravity models into the state-of-the-art Boltzmann codes that are typically hard-coded for GR and DE. Furthermore, it can also provide theoretical insights into their behavior since in linear perturbation theory it is easy to derive physically motivated quantities such as the DE anisotropic stress or the DE sound speed. We also present some explicit applications of the effective fluid approach with f(R), Horndeski and scalar–vector–tensor models, namely, how this approach can be used to easily solve the perturbation equations and incorporate the aforementioned modified gravity models into Boltzmann codes so as to obtain cosmological constraints using Monte Carlo analyses.
Analysis of Template Variations on RNA Synthesis by Respiratory Syncytial Virus Polymerase
Authors: Cao Dongdong , Gooneratne Inesh , Mera Cristopher , Vy Jenny , Royal Maurice , Huang Bozun , Park Yuri , Manjunath Ambika , Liang Bo
Published: December 2022

Respiratory syncytial virus (RSV) is a significant threat to infants and elderly individuals globally. Currently, there are no effective therapies or treatments for RSV infection because of an insufficient understanding of the RSV viral machinery. In this study, we investigated the effects of the template variations on RNA synthesis by the RSV polymerase through in vitro RNA synthesis assays. We confirmed the previously reported back-priming activity of the RSV polymerase, which is likely due to the secondary structure of the RNA template. We found that the expansion of the hairpin loop size of the RNA template abolishes the RSV polymerase back-priming activity. At the same time, it seemingly does not affect the de novo RNA synthesis activities of the RSV polymerase. Interestingly, our results show that the RSV polymerase also has a new primer-based terminal extension activity that adds nucleotides to the template and primer in a nonspecific manner. We also mapped the impact of the RNA 5′ chemical group on its mobility in a urea-denaturing RNA gel shift assay. Overall, these results enhance our knowledge about the RNA synthesis processes of the RSV polymerase and may guide future therapeutic efforts to develop effective antiviral drugs for RSV treatment.
Understanding the Biology and Immune Pathogenesis of Chikungunya Virus Infection for Diagnostic and Vaccine Development
Authors: Hakim Mohamad S. , Aman Abu T.
Published: December 2022

Chikungunya virus, the causative agent of chikungunya fever, is generally characterized by the sudden onset of symptoms, including fever, rash, myalgia, and headache. In some patients, acute chikungunya virus infection progresses to severe and chronic arthralgia that persists for years. Chikungunya infection is more commonly identified in tropical and subtropical regions. However, recent expansions and epidemics in the temperate regions have raised concerns about the future public health impact of chikungunya diseases. Several underlying factors have likely contributed to the recent re-emergence of chikungunya infection, including urbanization, human travel, viral adaptation to mosquito vectors, lack of effective control measures, and the spread of mosquito vectors to new regions. However, the true burden of chikungunya disease is most likely to be underestimated, particularly in developing countries, due to the lack of standard diagnostic assays and clinical manifestations overlapping with those of other endemic viral infections in the regions. Additionally, there have been no chikungunya vaccines available to prevent the infection. Thus, it is important to update our understanding of the immunopathogenesis of chikungunya infection, its clinical manifestations, the diagnosis, and the development of chikungunya vaccines.
Genetic Diversity and Expanded Host Range of J Paramyxovirus Detected in Wild Small Mammals in China
Authors: Zhang Yunfa , Zhang Jingtao , Wang Yuna , Tian Feng , Zhang Xiaolong , Wang Gang , Li Shuang , Ding Heng , Hu Zhenyu , Liu Wei , Zhang Xiaoai
Published: December 2022

J paramyxovirus (JPV) is a rodent-borne Jeilongvirus isolated from moribund mice (Mus musculus) with hemorrhagic lung lesions trapped in the 1972 in northern Queensland, Australia. The JPV antibodies have been detected in wild mice, wild rats, pigs, and human populations in Australia. Here, by next-generation sequencing (NGS), we detected JPV from M. musculus in Shandong Province of China. Molecular detection of JPV was performed to survey to survey the infection among 66 species of wild small mammals collected from six eco-climate regions in China by applying JPV specific RT-PCR and sequencing. Altogether, 21 out of 3070 (0.68%) wild small mammals of four species were positive for JPV, including 5.26% (1/19) of Microtus fortis, 3.76% (17/452) of M. musculus, 1.67% (1/60) of Apodemus peninsulae, and 0.48% (2/421) of Apodemus agrarius, which captured three eco-climate regions of China (northeastern China, northern China, and Inner Mongolia-Xinjiang). Sequence analysis revealed the currently identified JPV was clustered with other 14 Jeilongvirus members, and shared 80.2% and 89.2% identity with Australia’s JPV partial RNA polymerase (L) and glycoprotein (G) genes, respectively. Phylogenetic analysis demonstrated the separation of three lineages of the current JPV sequences. Our results show three new hosts (A. agrarius, A. peninsulae, and M. fortis) for JPV, most of which were widely distributed in China, and highlight the potential zoonotic transmission of JPV in humans. The detection of JPV in wild small mammals in China broaden the viral diversity, geographical distribution, and reservoir types of JPV. Future studies should prioritize determining the epidemiological characteristics of JPV, so that potential risks can be mitigated.
The Indirect ELISA and Monoclonal Antibody against African Swine Fever Virus p17 Revealed Efficient Detection and Application Prospects
Authors: Li Liwei , Qiao Sina , Li Guoxin , Tong Wu , Dong Shishan , Liu Jiachen , Guo Ziqiang , Zheng Haihong , Zhao Ran , Tong Guangzhi , Zhou Yanjun , Gao Fei
Published: December 2022

Since 2018, the outbreak and prevalence of the African swine fever virus (ASFV) in China have caused huge economic losses. Less virulent ASFVs emerged in 2020, which led to difficulties and challenges for early diagnosis and control of African swine fever (ASF) in China. An effective method of monitoring ASFV antibodies and specific antibodies against ASFV to promote the development of prevention techniques are urgently needed. In the present study, ASFV p17 was successfully expressed in CHO cells using a suspension culture system. An indirect enzyme-linked immunosorbent assay (ELISA) based on purified p17 was established and optimized. The monoclonal antibody (mAb) against p17 recognized a conservative linear epitope (3TETSPLLSH11) and exhibited specific reactivity, which was conducive to the identification of recombinant porcine reproductive and respiratory syndrome virus (PRRSV) expressing p17. The ELISA method efficiently detected clinical ASFV infection and effectively monitored the antibody levels in vivo after recombinant PRRSV live vector virus expressing p17 vaccination. Overall, the determination of the conserved linear epitope of p17 would contribute to the in-depth exploration of the biological function of the ASFV antigen protein. The indirect ELISA method and mAb against ASFV p17 revealed efficient detection and promising application prospects, making them ideal for epidemiological surveillance and vaccine research on ASF.
Parent tRNA Modification Status Determines the Induction of Functional tRNA-Derived RNA by Respiratory Syncytial Virus Infection
Authors: Choi Eun-Jin , Wu Wenzhe , Zhang Ke , Yuan Xiaohong , Deng Junfang , Ismail Deena , Buck Darby L. , Thomason Kerrie S. , Garofalo Roberto P. , Zhang Shenglong , Bao Xiaoyong
Published: December 2022

tRNA-derived RNA fragments (tRFs) are a recently discovered family of small noncoding RNAs (sncRNAs). We previously reported that respiratory syncytial virus (RSV) infection induces functional tRFs, which are derived from a limited subset of parent tRNAs, in airway epithelial cells. Such induction is also observed in nasopharyngeal wash samples from RSV patients and correlates to RSV genome copies, suggesting a clinical significance of tRFs in RSV infection. This work also investigates whether the modification of parent tRNAs is changed by RSV to induce tRFs, using one of the most inducible tRFs as a model. We discovered that RSV infection changed the methylation modification of adenine at position 57 in tRNA glutamic acid, with a codon of CTC (tRNA-GluCTC), and the change is essential for its cleavage. AlkB homolog 1, a previously reported tRNA demethylase, appears to remove methyladenine from tRNA-GluCTC, prompting the subsequent production of tRFs from the 5′-end of tRNA-GluCTC, a regulator of RSV replication. This study demonstrates for the first time the importance of post-transcriptional modification of tRNAs in tRF biogenesis following RSV infection, providing critical insights for antiviral strategy development.
Endogenous Retrovirus Elements Are Co-Expressed with IFN Stimulation Genes in the JAK–STAT Pathway
Authors: Wang Yanglan , Liu Mengying , Guo Xing , Zhang Bohan , Li Hanping , Liu Yongjian , Han Jingwan , Jia Lei , Li Lin
Published: December 2022

Background: Endogenous retrovirus (ERV) elements can act as proximal regulatory elements in promoting interferon (IFN) responses. Previous relevant studies have mainly focused on IFN-stimulated genes (ISGs). However, the role of ERV elements as cis-regulatory motifs in regulating genes of the JAK–STAT pathway remains poorly understood. In our study, we analyzed the changes in ERV elements and genes under both IFN stimulation and blockade of the signaling pathway. Methods: The effects of interferon on cells under normal conditions and knockout of the receptor were compared based on the THP1_IFNAR1_KO and THP1_IFNAR2_mutant cell lines. The correlation between differentially expressed ERVs (DHERVs) and differentially expressed genes (DEGs) as DEHERV-G pairs was explored with construction of gene regulatory networks related to ERV and induced by proinflammatory cytokines. Results: A total of 430 DEHERV loci and 190 DEGs were identified in 842 DEHERV-G pairs that are common to the three groups. More than 87% of DEHERV-G pairs demonstrated a consistent expression pattern. ISGs such as AIM2, IFIT1, IFIT2, IFIT3, STAT1, and IRF were activated via the JAK–STAT pathway in response to interferon stimulation. Thus, STAT1, STAT2, and IRF1 appear to play core roles in regulatory networks and are closely associated with ERVs. Conclusions: The RNA expression of ISGs and ERV elements is correlated, indicating that ERV elements are closely linked to host innate immune responses.
Hepatitis E Virus (HEV) Synopsis: General Aspects and Focus on Bangladesh
Authors: Aziz Asma Binte , Øverbø Joakim , Dudman Susanne , Julin Cathinka Halle , Kwon Yoon Jeong Gabby , Jahan Yasmin , Ali Mohammad , Dembinski Jennifer L.
Published: December 2022

HEV is the most common cause of acute hepatitis globally. This review summarizes the latest knowledge on the epidemiology, clinical characteristics, testing, and treatment of HEV infection. We also focused on Bangladesh to highlight the distinct challenges and the possible remedies. In low-income settings, the virus is mainly transmitted between people by fecal contamination of drinking water causing large outbreaks, and sporadic cases. The disease is usually mild and self-limiting acute hepatitis. Still, pregnant women and their offspring in low-income countries are at particular risk for severe disease, with up to 20% maternal mortality. Despite the high burden of the disease, HEV remains a relatively neglected virus, with detection hampered by costly tests and a lack of suitable treatments. Molecular PCR diagnostics, together with ELISA antibody tests, remain the preferred methods for diagnosis of HEV; however, rapid bedside diagnostics are available and could offer a practical alternative, especially in low-income countries. One vaccine (HEV 239) is only available in China and Pakistan, as efficacy against the other genotypes remains uncertain. The effectiveness trial conducted in Bangladesh might lead the way in gathering more efficacy data and could, together with improved surveillance and raised awareness, dramatically reduce the global burden of HEV.
Insights into HIV-1 Transmission Dynamics Using Routinely Collected Data in the Mid-Atlantic United States
Authors: Kassaye Seble G. , Grossman Zehava , Vengurlekar Priyanka , Chai William , Wallace Megan , Rhee Soo-Yon , Meyer William A. , Kaufman Harvey W. , Castel Amanda , Jordan Jeanne , Crandall Keith A. , Kang Alisa , Kumar Princy , Katzenstein David A. , Shafer Robert W. , Maldarelli Frank
Published: December 2022

Background: Molecular epidemiological approaches provide opportunities to characterize HIV transmission dynamics. We analyzed HIV sequences and virus load (VL) results obtained during routine clinical care, and individual’s zip-code location to determine utility of this approach. Methods: HIV-1 pol sequences aligned using ClustalW were subtyped using REGA. A maximum likelihood (ML) tree was generated using IQTree. Transmission clusters with ≤3% genetic distance (GD) and ≥90% bootstrap support were identified using ClusterPicker. We conducted Bayesian analysis using BEAST to confirm transmission clusters. The proportion of nucleotides with ambiguity ≤0.5% was considered indicative of early infection. Descriptive statistics were applied to characterize clusters and group comparisons were performed using chi-square or t-test. Results: Among 2775 adults with data from 2014–2015, 2589 (93%) had subtype B HIV-1, mean age was 44 years (SD 12.7), 66.4% were male, and 25% had nucleotide ambiguity ≤0.5. There were 456 individuals in 193 clusters: 149 dyads, 32 triads, and 12 groups with ≥ four individuals per cluster. More commonly in clusters were males than females, 349 (76.5%) vs. 107 (23.5%), p < 0.0001; younger individuals, 35.3 years (SD 12.1) vs. 44.7 (SD 12.3), p < 0.0001; and those with early HIV-1 infection by nucleotide ambiguity, 202/456 (44.3%) vs. 442/2133 (20.7%), p < 0.0001. Members of 43/193 (22.3%) of clusters included individuals in different jurisdictions. Clusters ≥ four individuals were similarly found using BEAST. HIV-1 viral load (VL) ≥3.0 log10 c/mL was most common among individuals in clusters ≥ four, 18/21, (85.7%) compared to 137/208 (65.8%) in clusters sized 2–3, and 927/1169 (79.3%) who were not in a cluster (p < 0.0001). Discussion: HIV sequence data obtained for HIV clinical management provide insights into regional transmission dynamics. Our findings demonstrate the additional utility of HIV-1 VL data in combination with phylogenetic inferences as an enhanced contact tracing tool to direct HIV treatment and prevention services. Trans-jurisdictional approaches are needed to optimize efforts to end the HIV epidemic.
On the Evolutionary Trajectory of SARS-CoV-2: Host Immunity as a Driver of Adaptation in RNA Viruses
Authors: Warger Jacob , Gaudieri Silvana
Published: December 2022

Host immunity can exert a complex array of selective pressures on a pathogen, which can drive highly mutable RNA viruses towards viral escape. The plasticity of a virus depends on its rate of mutation, as well as the balance of fitness cost and benefit of mutations, including viral adaptations to the host’s immune response. Since its emergence, SARS-CoV-2 has diversified into genetically distinct variants, which are characterised often by clusters of mutations that bolster its capacity to escape human innate and adaptive immunity. Such viral escape is well documented in the context of other pandemic RNA viruses such as the human immunodeficiency virus (HIV) and influenza virus. This review describes the selection pressures the host’s antiviral immunity exerts on SARS-CoV-2 and other RNA viruses, resulting in divergence of viral strains into more adapted forms. As RNA viruses obscure themselves from host immunity, they uncover weak points in their own armoury that can inform more comprehensive, long-lasting, and potentially cross-protective vaccine coverage.
Efficacy and Safety of COVID-19 Vaccination in Older Adults: A Systematic Review and Meta-Analysis
Authors: Zhang Lei , Jiang Lihong , Tian Tian , Li Wenjing , Pan Yonghui , Wang Yongchen
Published: December 2022

Objective: To analyze the differences in efficacy and safety of different types of novel coronavirus pneumonia (COVID-19) vaccines in different age groups (young adults and elderly). Methods: Randomized controlled trials (RCTs) on COVID-19 vaccine in PubMed, Embase, Web of Science, and Cochrane library were searched by computer, and eight eligible studies were analyzed. Meta-analysis was performed using Stata 16.0 and RevMan5.4 software. Results: The mean geometric titer (GMT) of the virus in the elderly was significantly higher than that in the placebo group (SMD = 0.91, 95% CI (0.68, 1.15), p < 0.01), presenting no obvious difference compared with the young adults (SMD = 0.19, 95% CI (0.38, 0.01), p = 0.06). Meanwhile, the effect of multiple vaccinations was better than that of single vaccination (SMD = 0.83, 95% CI (0.33, 1.34), p < 0.01). However, the number of adverse events (AEs) in the elderly was lower than that in the young adults (OR = 0.35, 95% CI (0.29, 0.42), p < 0.01). Conclusions: The immunization effect of COVID-19 vaccine in the elderly is obvious, especially after multiple vaccinations, and the incidence of AEs in the elderly is low, which proves that the vaccination of the elderly is safe and effective.
Performance Comparison of Recombinant Baculovirus and Rabies Virus-like Particles production Using Two Culture Platforms
Authors: Guardalini Luis Giovani Oliveira , Cavalcante Paulo Eduardo da Silva , Leme Jaci , Mello Renata Gois de , Bernardino Thaissa Consoni , Jared Simone Gonçalves Silva , Antoniazzi Marta Maria , Astray Renato Mancini , Tonso Aldo , Fernández Núñez Eutimio Gustavo , Jorge Soraia Attie Calil
Published: December 2022

This work aimed to assess, following upstream optimization in Schott flasks, the scalability from this culture platform to a stirred-tank bioreactor in order to yield rabies-recombinant baculovirus, bearing genes of G (BVG) and M (BVM) proteins, and to obtain rabies virus-like particles (VLP) from them, using Sf9 insect cells as a host. Equivalent assays in Schott flasks and a bioreactor were performed to compare both systems and a multivariate statistical approach was also carried out to maximize VLP production as a function of BVG and BVM’s multiplicity of infection (MOI) and harvest time (HT). Viable cell density, cell viability, virus titer, BVG and BVM quantification by dot-blot, and BVG quantification by Enzyme-Linked Immunosorbent Assay (ELISA) were monitored throughout the assays. Furthermore, transmission electron microscopy was used to characterize rabies VLP. The optimal combination for maximum VLP expression was BVG and BVM MOI of 2.3 pfu/cell and 5.1 pfu/cell, respectively, and 108 h of harvest time. The current study confirmed that the utilization of Schott flasks and a benchtop bioreactor under the conditions applied herein are equivalent regarding the cell death kinetics corresponding to the recombinant baculovirus infection process in Sf9 cells. According to the results, the hydrodynamic and chemical differences in both systems seem to greatly affect the virus and VLP integrity after release.
Unglycosylated Soluble SARS-CoV-2 Receptor Binding Domain (RBD) Produced in E. coli Combined with the Army Liposomal Formulation Containing QS21 (ALFQ) Elicits Neutralizing Antibodies against Mismatched Variants
Authors: Balasubramaniyam Arasu , Ryan Emma , Brown Dallas , Hamza Therwa , Harrison William , Gan Michael , Sankhala Rajeshwer S. , Chen Wei-Hung , Martinez Elizabeth J. , Jensen Jaime L. , Dussupt Vincent , Mendez-Rivera Letzibeth , Mayer Sandra , King Jocelyn , Michael Nelson L. , Regules Jason , Krebs Shelly , Rao Mangala , Matyas Gary R. , Joyce M. Gordon , Batchelor Adrian H. , Gromowski Gregory D. , Dutta Sheetij
Published: December 2022

The emergence of novel potentially pandemic pathogens necessitates the rapid manufacture and deployment of effective, stable, and locally manufacturable vaccines on a global scale. In this study, the ability of the Escherichia coli expression system to produce the receptor binding domain (RBD) of the SARS-CoV-2 spike protein was evaluated. The RBD of the original Wuhan-Hu1 variant and of the Alpha and Beta variants of concern (VoC) were expressed in E. coli, and their biochemical and immunological profiles were compared to RBD produced in mammalian cells. The E. coli-produced RBD variants recapitulated the structural character of mammalian-expressed RBD and bound to human angiotensin converting enzyme (ACE2) receptor and a panel of neutralizing SARS-CoV-2 monoclonal antibodies. A pilot vaccination in mice with bacterial RBDs formulated with a novel liposomal adjuvant, Army Liposomal Formulation containing QS21 (ALFQ), induced polyclonal antibodies that inhibited RBD association to ACE2 in vitro and potently neutralized homologous and heterologous SARS-CoV-2 pseudoviruses. Although all vaccines induced neutralization of the non-vaccine Delta variant, only the Beta RBD vaccine produced in E. coli and mammalian cells effectively neutralized the Omicron BA.1 pseudovirus. These outcomes warrant further exploration of E. coli as an expression platform for non-glycosylated, soluble immunogens for future rapid response to emerging pandemic pathogens.
Web-Based Reporting of Post-Vaccination Symptoms for Inactivated COVID-19 Vaccines in Jordan: A Cross-Sectional Study
Authors: Nassar Razan I. , Barakat Muna , Thiab Samar , El-Hajji Feras , Barqawi Hiba , El-Huneidi Waseem , Basheti Iman A. , Abu-Gharbieh Eman
Published: December 2022

Background: The perception of COVID-19 vaccines as being unsafe is a major barrier to receiving the vaccine. Providing the public with accurate data regarding the vaccines would reduce vaccine hesitancy. Methods: A cross-sectional study was conducted to collect data on the side effects experienced by the vaccinated population to assess the safety of the inactivated COVID-19 vaccine. Results: The majority of the study participants (n = 386) were female (71.9%), and 38.6% of them were under 30 years old. Around half of the participants (52.8%) reported side effects after receiving the inactivated COVID-19 vaccine. Fatigue (85.1%), a sore arm at the site of the injection (82.1%), and discomfort (67.2%) were the most commonly reported side effects after the first dose. Reporting side effects was significantly associated with the female sex (p-value = 0.027). Significant associations between being female and experiencing chills, muscle or joint pain, anorexia, drowsiness, and hair loss were also found, as well as being above the age of 30 and experiencing a cough. Being a smoker was significantly associated with experiencing a cough, and a headache. Furthermore, chills, and a sore throat were significantly associated with individuals who had not been infected before. Conclusion: Mild side effects were reported after receiving the inactivated COVID-19 vaccine. Fatigue was the most commonly reported side effect. Females, older adults, smokers, and those who had never been infected with COVID-19 had a greater susceptibility to certain side effects.
Increase in the Immune Response in Balb/c Mice after the Co-Administration of a Vector-Based COVID-19 Vaccine with Cytosine Phosphoguanine Oligodeoxynucleotide
Authors: Celise Divine Ainee , Kimotho James , Kimani Josephine W. , Muriithi Alex Kigundu , Odari Eddy Okoth
Published: December 2022

The effects of cytosine phosphoguanine oligodeoxynucleotides (CPG ODNs) on immune response have been demonstrated for different vaccines; however, such information is limited for the vector-based Coronavirus disease 2019 (COVID-19). This paper aims to demonstrate the potential effect of CPG ODNs on immunological response against the vector-based COVID-19 vaccine on Balb/c mice using a JNJ-78436735 Ad26.COV2-S recombinant as a model vaccine. A total of 18 BALB/c mice clustered into six groups were used. All groups were observed for 14- and 28-days post immunization. Qualitative determination of IgG was performed using indirect Enzyme-Linked Immunosorbent Assay (ELISA) and qPCR for cytokine profiling. A significant (p ≤ 0.001) rise in antibody response was observed for groups 3 and 4, who also showed increased expression levels of Tumor Necrosis Factor (TNF) and Interferon Gamma (IFN-γ). Immunological parameters for toxicity were normal in all treatment groups. We conclude that supplementing vector-based COVID-19 vaccines with CpG ODNs has the potential to boost the body’s immune responses to severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infection.
Immunogenicity of BNT162b2, BBIBP-CorV, Gam-COVID-Vac and ChAdOx1 nCoV-19 Vaccines Six Months after the Second Dose: A Longitudinal Prospective Study
Authors: Petrović Vladimir , Vuković Vladimir , Patić Aleksandra , Marković Miloš , Ristić Mioljub
Published: December 2022

Many available SARS-CoV-2 vaccines demonstrated good humoral response, but studies directly comparing their immunogenicity in the general population are lacking. We evaluated the medium–term kinetics of anti-S SARS-CoV-2 antibodies (Abs) at one and six months after the second dose of BNT162b2, BBIBP-CorV, and Gam-COVID-Vac. Immunogenicity at six months was directly compared between BNT162b2, BBIBP-CorV, Gam-COVID-Vac, and ChAdOx1 nCoV-19. Participants ≥ 20 years old from Novi Sad, Serbia, without prior SARS-CoV-2 infection, were included. Anti S1/S2 IgG antibodies were measured using quantitative LIAISON SARS-CoV-2 assay. A total of 368 participants were included: 231 (62.77%) had sera collected at two time points. Two doses of BNT162b2 were received by 37.50% of participants, followed by BBIBP-CorV (22.01%), Gam-COVID-Vac (21.47%), and ChAdOx1 nCoV-19 (19.02%). Mean Ab levels at the 28th day and 6 months were 216.55 (SD = 105.73) AU/mL and 75.68 (SD = 57.30) for BNT162b2, 194.38 (SD = 140.24) and 90.53 (SD = 111.30) for Gam-COVID-Vac, and 72.74 (SD = 80.04) and 24.43 (SD = 38.43) for BBIBP-CorV group (p < 0.01, between two time points across all three groups), with a significant difference between women and men (p < 0.01, for both sexes). At the sixth month post-vaccination, the highest mean Ab level was detected in Gam-COVID-Vac group (91.28 AU/mL, SD = 95.96), followed by BNT162b2 (85.25 AU/mL, SD = 60.02), ChAdOx1 nCoV-19 (64.22 AU/mL, SD = 65.30), and BBIBP-CorV (25.26 AU/mL, SD = 36.92) (p < 0.01). Anti-spike IgG persistence was demonstrated six months post-vaccination with a significant decline in Ab levels. These results suggest a lower protection against SARS-CoV-2 over time. Our findings support the introduction of additional (booster) doses.
Analysis of Antibody Neutralisation Activity against SARS-CoV-2 Variants and Seasonal Human Coronaviruses NL63, HKU1, and 229E Induced by Three Different COVID-19 Vaccine Platforms
Authors: Cantoni Diego , Siracusano Gabriel , Mayora-Neto Martin , Pastori Claudia , Fantoni Tobia , Lytras Spyros , Di Genova Cecilia , Hughes Joseph ,   on behalf of the Ambulatorio Medico San Luca Villanuova Group, Lopalco Lucia , Temperton Nigel
Published: December 2022

Coronaviruses infections, culminating in the recent severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) pandemic beginning in 2019, have highlighted the importance of effective vaccines to induce an antibody response with cross-neutralizing activity. COVID-19 vaccines have been rapidly developed to reduce the burden of SARS-CoV-2 infections and disease severity. Cross-protection from seasonal human coronaviruses (hCoVs) infections has been hypothesized but is still controversial. Here, we investigated the neutralizing activity against ancestral SARS-CoV-2 and the variants of concern (VOCs) in individuals vaccinated with two doses of either BNT162b2, mRNA-1273, or AZD1222, with or without a history of SARS-CoV-2 infection. Antibody neutralizing activity to SARS-CoV-2 and the VOCs was higher in BNT162b2-vaccinated subjects who were previously infected with SARS-CoV-2 and conferred broad-spectrum protection. The Omicron BA.1 variant was the most resistant among the VOCs. COVID-19 vaccination did not confer protection against hCoV-HKU1. Conversely, antibodies induced by mRNA-1273 vaccination displayed a boosting in their neutralizing activity against hCoV-NL63, whereas AZD1222 vaccination increased antibody neutralization against hCoV-229E, suggesting potential differences in antigenicity and immunogenicity of the different spike constructs used between various vaccination platforms. These data would suggest that there may be shared epitopes between the HCoVs and SARS-CoV-2 spike proteins.
Hemorrhage and Sudden Death in a Cat with Pancreatic Hemangiosarcoma
Authors: Toma Corina , Popa Roxana , Haralambie Mara-Georgiana , Haralambie Oana-Roxana , Marica Raluca
Published: December 2022

A 15-year-old female, indoor, spayed, domestic shorthair cat was presented for post-mortem evaluation with a history of sudden death. A red-brown 3 cm x 4 cm neoplastic mass was identified within the body of the pancreas, along with multiple similar nodular structures within the omentum and liver. Associated lesions included hemoperitoneum, yellow discoloration of the peritoneal wall, and severe anemia. Spindle-shaped neoplastic cells exhibiting malignancy features, which occasionally contained within the cytoplasm haematoidin crystals and/or red blood cells, were observed during cytological examination. Histologically, the neoplastic cells were organized in short streams forming vascular spaces filled with erythrocytes. Immunohistochemically, the neoplastic cells were immunolabeled for vimentin and CD31, supporting the diagnosis of hemangiosarcoma. This report offers a complete post-mortem and histological evaluation of a rare tumor in cats with an unusual location and a comparative assessment of 3 anti-CD31 antibodies.
Maternal Behavior in Beef Cattle: The Physiology, Assessment and Future Directions—A Review
Authors: Nevard Rory P. , Pant Sameer D. , Broster John C. , Norman Scott T. , Stephen Cyril P.
Published: December 2022

Bovine maternal behavior is known to be influenced by a variety of factors including hormonal mediation, breed, age, parity, host genetics and general management practices. Following centuries of varying levels of domestication processes, the behavior of the bovine cow has altered from that of her original wild ungulate ancestors, although many maternal instincts have remained unchanged. The influence of maternal behavior on calf health and performance is of interest to cow-calf beef production operations, as in most instances, the cow is solely responsible for rearing the calf until weaning. However, investigating the magnitude of this influence is challenging, in part because objective measurement of behavioral traits is difficult, particularly in extensive settings. In recent years, while a number of remote monitoring devices have been developed that afford opportunities for objective measurement of behavioral traits in livestock, characterization of physiological mechanisms that underlie superior maternal behavior, including identification of potential biomarkers remains elusive in cattle. Hormonal profiles during the periparturient period have been shown to influence behavioral patterns in both current and future generations in other mammalian species and may provide insights into the physiology of bovine maternal behavior. Therefore, the aim of this review is to describe general characteristics of bovine maternal behavior and the factors known to influence it, including hormonal drivers, through which cross-reference to other species is made. Current methods of measuring and assessing behavior that may also be applicable to most production settings have also been reviewed. At present, there is no known hormonal assay that can be used to measure and/or reliably predict bovine maternal behavior post-calving or across generations. Being able to objectively assess superior maternal behavior, whether that be through remote monitoring, hormonal profiling or indirectly through measuring calf performance will be beneficial to livestock industries in the future.
Derivation of the Omega-3 Index from EPA and DHA Analysis of Dried Blood Spots from Dogs and Cats
Authors: Harris William , Jackson Kristina , Carlson Heather , Hoem Nils , Dominguez Tonje , Burri Lena
Published: December 2022

The Omega-3 Index (O3I) is the red blood cell (RBC) eicosapentaenoic acid (EPA) plus docosahexaenoic acid (DHA) content expressed as a percentage of total RBC fatty acids. Although a validated biomarker of omega-3 status in humans, little is known about the O3I status of dogs and cats; species in which omega-3 fatty acids have known health benefits. The purpose of this study was to develop equations to predict the O3I in these species from a dried blood spot (DBS) analysis. Random blood samples from 33 dogs and 10 cats were obtained from a community veterinary clinic. DBS and RBC samples were analyzed for fatty acid composition. For both species, the R2 between the DBS EPA + DHA value and the O3I was >0.96 (p < 0.001). The O3I was roughly 75% lower in dogs and cats than in humans. We conclude that the O3I can be estimated from a DBS sample, and the convenience of DBS collection should facilitate omega-3 research in these companion animals.
Global Maps of Avian Leukosis Viruses: Research Trends and Themes Based on Networking
Authors: Zaib Gul , Hu Xuming , Cui Hengmi
Published: December 2022

Avian leukosis virus (ALV) has a tremendous adverse impact on the poultry industry. Since its discovery, research on different aspects of ALV have been published. Due to the vast academic emphasis and economic importance of the ALV infection in poultry worldwide, this bibliometric analysis explored the scientific output associated with ALV utilizing the Web of Science (Core Collection) database. The relevant data were collected using the search query “AVIAN LEUKOSIS VIRUS”, further refined by document types (article, book chapter, and proceedings paper). Finally, 1060 items with full records were imported in Plaintext and tab-delimited formats. The data analysis was carried out using MS Excel, VOS viewer, and R (Biblioshiny) software. Chinese and American research institutions produced the majority of papers during study time period. The Journal of Virology and Avian Diseases appeared as the favorite journal/source for publications. Apart from the avian leukosis virus and the ALV-J, the important keywords mentioned included avian leukosis virus subgroup j, chicken, and retrovirus. The analysis revealed substantial findings on ALV research, with a strong research response from the USA and China.
A Preliminary Approximation to Microbiological Beach Sand Quality along the Coast of the Department of Atlántico (Caribbean Sea of Colombia): Influence of the Magdalena River
Authors: Bolívar-Anillo Hernando José , Soto-Varela Zamira E. , Sánchez Moreno Hernando , Villate Daza Diego Andrés , Rosado-Porto David , Vega Benites Shersy , Pichón González Camila , Anfuso Giorgio
Published: December 2022

Beaches represent important economic resources linked to “Sun, Sea and Sand” tourism and, therefore, their water quality constitutes an issue of great relevance especially in developing countries. The main objective of this work was to determine the microbial quality of beach sediments along the Caribbean coast of the Department of Atlántico (Colombia) and its relationships with the existence of local sources of contamination (e.g., streams containing wastewaters), beach exposition to waves, the quantity of beach visitors—which is reflected by beach typology (e.g., urban, rural, etc.), the presence of tourist activities/infrastructures and the beach sand sedimentological characteristics. Along the study area, samples of beach sediments were gathered in beach face and backshore areas at 11 sectors and the microbiological counts of three faecal indicator bacteria, i.e., Escherichia coli, Enterococcus spp. and Clostridium perfringens, were determined. A homogeneous distribution was recorded along the coast of Escherichia coli and Clostridium perfringens in both beach face and backshore sediments, in the order of 5 and 2 log CFU/100 mL, respectively; Enterococcus spp. was, at places, not observed in backshore sediments. No relationships existed between, on one side, the counts of the faecal indicator bacteria considered and, on the other side, the presence of streams and tourist activities/infrastructures, beach typology, exposition to waves and the sedimentological characteristics of beach sands. Such results suggest a chronic contamination of beach face and backshore sediments linked to the heavily polluted sedimentological load of the Magdalena River.
Removal of Molybdenum from Contaminated Groundwater Using Carbide-Derived Carbon
Authors: Manawi Yehia , Simson Simjo , Lawler Jenny , Kochkodan Viktor
Published: December 2022

In the present work, the removal of Mo from aqueous solutions and real groundwater by using the novel high-surface-area adsorbent carbide-derived carbon (CDC) was performed. The adsorbent was characterized using X-ray photoelectron spectroscopy (XPS), X-ray powder diffraction (XRD), scanning electron microscopy (SEM), transmission electron microscopy (TEM), energy-dispersive X-ray spectroscopy (EDS), Brunauer, Emmett, and Teller (BET) surface area analysis, and Fourier-transform infrared spectroscopy (FTIR). The effect of the operational parameters (contact time, CDC loading, Mo concentration, and pH) on the adsorptive performance of the sorbent in the batch adsorption mode was studied. The experimental work revealed that the adsorption of Mo onto CDC is a very fast process and provides 99% Mo removal in less than 30 min. The adsorption process was pH-dependent, achieving the maximum adsorptive removal at a pH range of 3–5. The highest adsorption capacity corresponded to 16.24 mg/g at a Mo concentration of 10 ppm, adsorbent loading of 0.6 g/L, and pH 3. Four models were used to analyze the adsorption isotherms of Mo onto CDC, which were Freundlich, Langmuir, Temkin, and Sips. The obtained adsorption results were also processed using four adsorption kinetic models: intra-particle diffusion, Elovich, second-order, and pseudo-first-order. The adsorption of Mo onto CDC was found to fit the Freundlich isotherm model, as confirmed by the highest R2 values (0.9118) and lowest SSE (0.4777), indicating the heterogeneous multilayer adsorption of Mo onto CDC. Likewise, the experimental adsorption data were found to be more consistent with the pseudo-second-order model. The main adsorption mechanisms contributing to Mo adsorption were found to be electrostatic interactions and ligand–ligand exchange, in addition to surface complexation or ion exchange between Mo ions and oxygen-containing groups on the CDC’s surface. Moreover, the removal efficiency under acidic conditions (pH: 3) was found to be stable and high (>99%), regardless of the Mo concentration (0.5–10 ppm) due to the characteristic PZC corresponding to CDC (pH 9.9). A performance test of the CDC using both real groundwater and GW spiked with 570 µg/L Mo showed an almost complete removal of Mo from GW. The regeneration tests confirmed that adsorbed Mo can be recovered from CDC by pH adjustment and the regenerated CDC can be reused.