bluuebunny/crossref_metadata_2025 huggingface dataset:
Supplementary Figure S3: Mice receiving allografts from Csf1R-GFP donors maintain their own microglial populations from Deletion of Neuropilin 1 from Microglia or Bone Marrow–Derived Macrophages Slows Glioma Progression
Authors: Miyauchi Jeremy Tetsuo , Caponegro Michael D. , Chen Danling , Choi Matthew K. , Li Melvin , Tsirka Stella E.
Published: March 2023

Iba1 staining on brain tissue and splenic tissue derived from mice which were lethally irradiated and then injected with marrow from Csf1R-GFP donor mice.
Figure S5 from CXCR4 Promotes Neuroblastoma Growth and Therapeutic Resistance through miR-15a/16-1–Mediated ERK and BCL2/Cyclin D1 Pathways
Authors: Klein Shiri , Abraham Michal , Bulvik Baruch , Dery Elia , Weiss Ido D. , Barashi Neta , Abramovitch Rinat , Wald Hanna , Harel Yaniv , Olam Devorah , Weiss Lola , Beider Katia , Eizenberg Orly , Wald Ori , Galun Eithan , Pereg Yaron , Peled Amnon
Published: March 2023

Expression levels of genes in CXCR4 overexpressing cell lines
Figures S8 & S9 from Breast Cancer Targeting through Inhibition of the Endoplasmic Reticulum-Based Apoptosis Regulator Nrh/BCL2L10
Authors: Nougarede Adrien , Popgeorgiev Nikolay , Kassem Loay , Omarjee Soleilmane , Borel Stephane , Mikaelian Ivan , Lopez Jonathan , Gadet Rudy , Marcillat Olivier , Treilleux Isabelle , Villoutreix Bruno O. , Rimokh Ruth , Gillet Germain
Published: March 2023

Fig. S8. Mechanism for irradiation-free dTAT peptide internalization Fig; S9. dTAT peptide treatment increases apoptosis of tumor cells in vivo
Supplementary Figure 1 from Rapid Intraoperative Diagnosis of Pediatric Brain Tumors Using Stimulated Raman Histology
Authors: Hollon Todd C. , Lewis Spencer , Pandian Balaji , Niknafs Yashar S. , Garrard Mia R. , Garton Hugh , Maher Cormac O. , McFadden Kathryn , Snuderl Matija , Lieberman Andrew P. , Muraszko Karin , Camelo-Piragua Sandra , Orringer Daniel A.
Published: March 2023

Random forest model 1. A) Example decision tree from random forest model 1. B) Out-of-bag, normal tissue, and tumor tissue classification error across 500 grown decision trees. C) Image feature importance for model 1.
Supplementary Figure S7 from Fibrinolytic Enzyme Cotherapy Improves Tumor Perfusion and Therapeutic Efficacy of Anticancer Nanomedicine
Authors: Kirtane Ameya R. , Sadhukha Tanmoy , Kim Hyunjoon , Khanna Vidhi , Koniar Brenda , Panyam Jayanth
Published: March 2023

Total fluorescence intensity in various tissues of animals treated with Doxil and Doxil + tPA.
Figure S2 from Reciprocal Regulation of DUSP9 and DUSP16 Expression by HIF1 Controls ERK and p38 MAP Kinase Activity and Mediates Chemotherapy-Induced Breast Cancer Stem Cell Enrichment
Authors: Lu Haiquan , Tran Linh , Park Youngrok , Chen Ivan , Lan Jie , Xie Yangyiran , Semenza Gregg L.
Published: March 2023

Epistasis analysis of the signaling pathway induced by chemotherapy in TNBC cells.
Figure S3 from In Silico Evaluation of Pharmacokinetic Optimization for Antimitogram-Based Clinical Trials
Authors: Haviari Skerdi , You Benoît , Tod Michel
Published: March 2023

Statistical testing: power diagram of the worst-case scenario.
Supplementary Figures from A p53-Responsive miRNA Network Promotes Cancer Cell Quiescence
Authors: La Ting , Liu Guang Zhi , Farrelly Margaret , Cole Nicole , Feng Yu Chen , Zhang Yuan Yuan , Sherwin Simonne K. , Yari Hamed , Tabatabaee Hessam , Yan Xu Guang , Guo Su Tang , Liu Tao , Thorne Rick F. , Jin Lei , Zhang Xu Dong
Published: March 2023

Supplementary Figure 1: MiR-27b-3p and miR-455-3p promote cellular quiescence in B16 mouse melanoma cells. Supplementary Figure 2: miR-27b-3p and miR-455-3p are conserved in various mammal species. Supplementary Figure 3: MiR-27b-3p and miR-455-3p promote p27 stabilization through downregulating Skp2 and promoting p27 phosphorylation at Thr187, respectively. Supplementary Figure 4: MiR-27b-3p and miR-455-3p target Cks1 and CAC1, respectively. Supplementary Figure 5: The genomic locus of miR-27b-3p and miR-455-3p. Supplementary Figure 6: miR-27b-3p and miR-455-3p are p53-responsive miRNAs. Supplementary Figure 7: p53 drives cellular quiescence through miRNA-27b-3p and miRNA-455-3p.
Supplementary Figure S1 from A Galaxy Implementation of Next-Generation Clustered Heatmaps for Interactive Exploration of Molecular Profiling Data
Authors: Broom Bradley M. , Ryan Michael C. , Brown Robert E. , Ikeda Futa , Stucky Mark , Kane David W. , Melott James , Wakefield Chris , Casasent Tod D. , Akbani Rehan , Weinstein John N.
Published: March 2023

Figure showing the NG-CHM Generator in the Galaxy bioinformatics platform.
Supplementary Tables 1-3 from Pyruvate Dehydrogenase PDH-E1β Controls Tumor Progression by Altering the Metabolic Status of Cancer Cells
Authors: Yonashiro Ryo , Eguchi Kayoko , Wake Masaki , Takeda Norihiko , Nakayama Koh
Published: March 2023

Supplementary Table 1: Sequence of the primers used in the study. Supplementary Table 2: 116 metabolites measured in the metabolome analysis. Supplementary Table 3: Source of data used in the PDH expression analyses (Figure 7G).
Table S2 from Combined Mutation of Apc, Kras, and Tgfbr2 Effectively Drives Metastasis of Intestinal Cancer
Authors: Sakai Eri , Nakayama Mizuho , Oshima Hiroko , Kouyama Yuta , Niida Atsushi , Fujii Satoshi , Ochiai Atsushi , Nakayama Keiichi I. , Mimori Koshi , Suzuki Yutaka , Hong Chang Pyo , Ock Chan-Young , Kim Seong-Jin , Oshima Masanobu
Published: March 2023

Gene list of AKT common differentially genes (DEGs)
Figure S3 from Combined Mutation of Apc, Kras, and Tgfbr2 Effectively Drives Metastasis of Intestinal Cancer
Authors: Sakai Eri , Nakayama Mizuho , Oshima Hiroko , Kouyama Yuta , Niida Atsushi , Fujii Satoshi , Ochiai Atsushi , Nakayama Keiichi I. , Mimori Koshi , Suzuki Yutaka , Hong Chang Pyo , Ock Chan-Young , Kim Seong-Jin , Oshima Masanobu
Published: March 2023

Submucosal invasion with desmoplasia and Snail2 expression
Figure S7-S8 from Expression of Adipocyte/Macrophage Fatty Acid–Binding Protein in Tumor-Associated Macrophages Promotes Breast Cancer Progression
Authors: Hao Jiaqing , Yan Fei , Zhang Yuwen , Triplett Ashley , Zhang Ying , Schultz Debra A. , Sun Yanwen , Zeng Jun , Silverstein Kevin A.T. , Zheng Qi , Bernlohr David A. , Cleary Margot P. , Egilmez Nejat K. , Sauter Edward , Liu Shujun , Suttles Jill , Li Bing
Published: March 2023

Figure S7 shows the analysis of miR array between WT and A-FABP-/- macrophages. Figure S8 demonstrates that A-FABP expression in macrophages promotes E0771 tumor lung metastasis
Figure S5-S6 from Expression of Adipocyte/Macrophage Fatty Acid–Binding Protein in Tumor-Associated Macrophages Promotes Breast Cancer Progression
Authors: Hao Jiaqing , Yan Fei , Zhang Yuwen , Triplett Ashley , Zhang Ying , Schultz Debra A. , Sun Yanwen , Zeng Jun , Silverstein Kevin A.T. , Zheng Qi , Bernlohr David A. , Cleary Margot P. , Egilmez Nejat K. , Sauter Edward , Liu Shujun , Suttles Jill , Li Bing
Published: March 2023

Figure S5 analyzes distinct subsets of macrophages in WT and A-FABP-/- mice. Figure S6 shows the impact of A-FABP expression on cytokine expression in different subsets of macrophages.
Suppl Figure 1 from FSTL1 Promotes Metastasis and Chemoresistance in Esophageal Squamous Cell Carcinoma through NFκB–BMP Signaling Cross-talk
Authors: Lau Marco Chi-Chung , Ng Kai Yu , Wong Tin Lok , Tong Man , Lee Terence K. , Ming Xiao-Yan , Law Simon , Lee Nikki P. , Cheung Annie L. , Qin Yan-Ru , Chan Kwok Wah , Ning Wen , Guan Xin-Yuan , Ma Stephanie
Published: March 2023

Representative immunohistochemical staining of high, medium and low FSTL1 in non-neoplastic squamous epithelium (non-tumor) and poorly differentiated ESCC tissue from 6 different patients.
Figure S1 from NFAT1-Mediated Regulation of NDEL1 Promotes Growth and Invasion of Glioma Stem-like Cells
Authors: Jiang Yang , Song Yifu , Wang Run , Hu Tianhao , Zhang Di , Wang Zixun , Tie Xinxin , Wang Minghao , Han Sheng
Published: March 2023

NFAT1 expression is associated with malignant glioma subtypes.
Supplemental Materials from Pharmacological Inhibition of PARP6 Triggers Multipolar Spindle Formation and Elicits Therapeutic Effects in Breast Cancer
Authors: Wang Zebin , Grosskurth Shaun E. , Cheung Tony , Petteruti Philip , Zhang Jingwen , Wang Xin , Wang Wenxian , Gharahdaghi Farzin , Wu Jiaquan , Su Nancy , Howard Ryan T. , Mayo Michele , Widzowski Dan , Scott David A. , Johannes Jeffrey W. , Lamb Michelle L. , Lawson Deborah , Dry Jonathan R. , Lyne Paul D. , Tate Edward W. , Zinda Michael , Mikule Keith , Fawell Stephen E. , Reimer Corinne , Chen Huawei
Published: March 2023

Supplemental materials
Supplementary Tables S1-S4 from KIT Suppresses BRAFV600E-Mutant Melanoma by Attenuating Oncogenic RAS/MAPK Signaling
Authors: Neiswender James V. , Kortum Robert L. , Bourque Caitlin , Kasheta Melissa , Zon Leonard I. , Morrison Deborah K. , Ceol Craig J.
Published: March 2023

Supplementary Table S1 and S2 show the BRET50 data for Supplementary Fig. S5A and S6B, respectively. Supplementary Table S3 and S4 show further analyses of the relationship between KIT expression and several clinical parameters of melanoma progression or tumor suppressor gene alteration.
Table S6 from Hemap: An Interactive Online Resource for Characterizing Molecular Phenotypes across Hematologic Malignancies
Authors: Pölönen Petri , Mehtonen Juha , Lin Jake , Liuksiala Thomas , Häyrynen Sergei , Teppo Susanna , Mäkinen Artturi , Kumar Ashwini , Malani Disha , Pohjolainen Virva , Porkka Kimmo , Heckman Caroline A. , May Patrick , Hautamäki Ville , Granberg Kirsi J. , Lohi Olli , Nykter Matti , Heinäniemi Merja
Published: March 2023

Top 5 pathways per cluster and regulator genes
Supplementary Figures from Clinical Proteomics of Breast Cancer Reveals a Novel Layer of Breast Cancer Classification
Authors: Yanovich Gali , Agmon Hadar , Harel Michal , Sonnenblick Amir , Peretz Tamar , Geiger Tamar
Published: March 2023

Supplementary Fig. S1: Sample preparation and processing workflows. Supplementary Fig. S2: Quantitative assessment of consensus clustering results. Supplementary Fig. S3: 2D enrichment analysis of LumB-related gene sets revealed common enrichment in CC1 when compared to both CC2 and CC3. Supplementary Fig. S4: Clustering of TCGA-RPPA compared to proteomic consensus clusters.
Table S6 from Tau Mutations Serve as a Novel Risk Factor for Cancer
Authors: Rossi Giacomina , Redaelli Veronica , Contiero Paolo , Fabiano Sabrina , Tagliabue Giovanna , Perego Paola , Benussi Luisa , Bruni Amalia C. , Filippini Graziella , Farinotti Mariangela , Giaccone Giorgio , Buiatiotis Simona , Manzoni Claudia , Ferrari Raffaele , Tagliavini Fabrizio
Published: March 2023

Table S6 shows tau's expression in almost all evaluated tissues, according to publicly available RNA/protein expression databases (GTEx; Cancer Atlas; Human Protein Atlas)
Table S2 from Tau Mutations Serve as a Novel Risk Factor for Cancer
Authors: Rossi Giacomina , Redaelli Veronica , Contiero Paolo , Fabiano Sabrina , Tagliabue Giovanna , Perego Paola , Benussi Luisa , Bruni Amalia C. , Filippini Graziella , Farinotti Mariangela , Giaccone Giorgio , Buiatiotis Simona , Manzoni Claudia , Ferrari Raffaele , Tagliavini Fabrizio
Published: March 2023

Table S2 shows in detail the number of subjects and regions of origin of tau-mutated and reference families
Supplementary Tables S1 and S2 from Identification of a Small Molecule That Selectively Inhibits ERG-Positive Cancer Cell Growth
Authors: Mohamed Ahmed A. , Xavier Charles P. , Sukumar Gauthaman , Tan Shyh-Han , Ravindranath Lakshmi , Seraj Nishat , Kumar Vineet , Sreenath Taduru , McLeod David G. , Petrovics Gyorgy , Rosner Inger L. , Srivastava Meera , Strovel Jeffrey , Malhotra Sanjay V. , LaRonde Nicole A. , Dobi Albert , Dalgard Clifton L. , Srivastava Shiv
Published: March 2023

S1. PCR primer list for ERG, S2. IC50 values of Inhibition of ERG protein and cell growth of ERGi-USU on established cell panel
Supplementary figures from In Vitro Priming of Adoptively Transferred T Cells with a RORγ Agonist Confers Durable Memory and Stemness In Vivo
Authors: Hu Xiao , Majchrzak Kinga , Liu Xikui , Wyatt Megan M. , Spooner Chauncey J. , Moisan Jacques , Zou Weiping , Carter Laura L. , Paulos Chrystal M.
Published: March 2023

Supplementary Figure S1 shows that RORgamma agonist treatment does not impact the transduction efficiency of CAR virus. Supplementary Figure S2 shows that RORgamma agonist treatment increases IL-17A secretion from TRP-1 Th0 and Th17 cells. Included in Supplementary Figure S3 are spaghetti plots showing data of individual mice used in main Figure 3 and survival curves of TRP-1 Th17 transferred mice. Supplementary Figure S4 presents bar graphs of memory markers. Graphs in Supplementary Figure S5 showing eradication of primary tumors by Type 17 T cells and the frequency of donor cells after third tumor challenge supplement the data described in Figure 7. Supplementary Figure S6 shows that after adoptive cell transfer, RORgamma agonist primed donor T cells contain fewer Treg cells and express lower levels of PD-1.
Supplementary Information from Heterochromatin Protein 1α Mediates Development and Aggressiveness of Neuroendocrine Prostate Cancer
Authors: Ci Xinpei , Hao Jun , Dong Xin , Choi Stephen Y. , Xue Hui , Wu Rebecca , Qu Sifeng , Gout Peter W. , Zhang Fang , Haegert Anne M. , Fazli Ladan , Crea Francesco , Ong Christopher J. , Zoubeidi Amina , He Housheng H. , Gleave Martin E. , Collins Colin C. , Lin Dong , Wang Yuzhuo
Published: March 2023

Supplementary materials and methods used in this study. Supplementary table with primer sequences. Figure S1, Histological feature of PDX models and heatmaps of PDX and clinical cohorts. Figure S2, IHC staining of HP1α in PDX models, and expression of Hp1α mRNA in NPp53 CRPC GEM models. Figure S3, Additional analyses of HP1α function in NEPC cells. Figure S4, Additional analyses of HP1α function in NE transdifferentiation. Figure S5, Additional analyses of the repressive function of HP1α on AR and REST expression. Figure S6, Additional analyses of the function of HP1α. Supplementary references.
Figure S4 from YAP/TAZ Initiates Gastric Tumorigenesis via Upregulation of MYC
Authors: Choi Wonyoung , Kim Jeongsik , Park Jaeoh , Lee Da-Hye , Hwang Daehee , Kim Jeong-Hwan , Ashktorab Hassan , Smoot Duane , Kim Seon-Young , Choi Chan , Koh Gou Young , Lim Dae-Sik
Published: March 2023

RNA-sequencing of Lats1/2iÎ"Lgr5 mice gastric tumors
Figure S2 from YAP/TAZ Initiates Gastric Tumorigenesis via Upregulation of MYC
Authors: Choi Wonyoung , Kim Jeongsik , Park Jaeoh , Lee Da-Hye , Hwang Daehee , Kim Jeong-Hwan , Ashktorab Hassan , Smoot Duane , Kim Seon-Young , Choi Chan , Koh Gou Young , Lim Dae-Sik
Published: March 2023

Knockout of Lats1 and Lats2 in pyloric stem cells causes progressive gastric dysplasia
Supplementary Figure S3 from HER2/EGFR–AKT Signaling Switches TGFβ from Inhibiting Cell Proliferation to Promoting Cell Migration in Breast Cancer
Authors: Huang Fei , Shi Qiaoni , Li Yuzhen , Xu Linlin , Xu Chi , Chen Fenfang , Wang Hai , Liao Hongwei , Chang Zai , Liu Fang , Zhang Xiang H.-F. , Feng Xin-Hua , Han Jing-Dong J. , Luo Shiwen , Chen Ye-Guang
Published: March 2023

HER2/EGFR signaling enhances Smad3 nuclear accumulation
Supplementary information from Enhanced Glycolysis Supports Cell Survival in EGFR-Mutant Lung Adenocarcinoma by Inhibiting Autophagy-Mediated EGFR Degradation
Authors: Kim Ji Hye , Nam Boas , Choi Yun Jung , Kim Seon Ye , Lee Jung-Eun , Sung Ki Jung , Kim Woo Sung , Choi Chang-Min , Chang Eun-Ju , Koh Jae Soo , Song Joon Seon , Yoon Shinkyo , Lee Jae Cheol , Rho Jin Kyung , Son Jaekyoung
Published: March 2023

Supplementary information contains 8 supplementary figures. Supplementary Figure 1. EGFR knockdown decreases glycolytic gene expression at the transcription level. Supplementary Figure 2. Glucose deprivation renders EGFR-mutant NSCLCs more sensitive to cell growth and death. Supplementary Figure 3. EGFR-mediated enhanced glycolysis is an important TCA cycle fuel source. Supplementary Figure 4. Mitochondrial ATP production is necessary for EGFR stability. Supplementary Figure 5. Anisomycin treatment inhibits the EGFR signaling pathway and activates apoptosis via JNK activation in vivo. Supplementary Figure 6. JNK is a downstream target of ROS. Supplementary Figure 7. Activated autophagy induces apoptotic cell death in EGFR-mutant NSCLCs. Supplementary Figure 8. Glucose deprivation has minimal effect on the growth of EGFR-TKIs-resistant cell lines without EGFR dependency.
Supplementary Figure S2 from Interleukin-30/IL27p28 Shapes Prostate Cancer Stem-like Cell Behavior and Is Critical for Tumor Onset and Metastasization
Authors: Sorrentino Carlo , Ciummo Stefania L. , Cipollone Giuseppe , Caputo Sara , Bellone Matteo , Di Carlo Emma
Published: March 2023

Expression of IL6Ralpha and gp130 in human PIN and prostatic adenocarcinoma (AC). Scale bars: 30 micron.
Figure S4 from The miR-371∼373 Cluster Represses Colon Cancer Initiation and Metastatic Colonization by Inhibiting the TGFBR2/ID1 Signaling Axis
Authors: Ullmann Pit , Rodriguez Fabien , Schmitz Martine , Meurer Steffen K. , Qureshi-Baig Komal , Felten Paul , Ginolhac Aurélien , Antunes Laurent , Frasquilho Sonia , Zügel Nikolaus , Weiskirchen Ralf , Haan Serge , Letellier Elisabeth
Published: March 2023

The miR-371~373 cluster represses colony formation potential of SW620 SCs without affecting cellular proliferation
Figure S3 from The miR-371∼373 Cluster Represses Colon Cancer Initiation and Metastatic Colonization by Inhibiting the TGFBR2/ID1 Signaling Axis
Authors: Ullmann Pit , Rodriguez Fabien , Schmitz Martine , Meurer Steffen K. , Qureshi-Baig Komal , Felten Paul , Ginolhac Aurélien , Antunes Laurent , Frasquilho Sonia , Zügel Nikolaus , Weiskirchen Ralf , Haan Serge , Letellier Elisabeth
Published: March 2023

Lentiviral transduction of miR-371~373 cluster restores miR-371~373 expression in different SCs
Figure S2 from NFATc1 Promotes Antitumoral Effector Functions and Memory CD8+ T-cell Differentiation during Non–Small Cell Lung Cancer Development
Authors: Heim Lisanne , Friedrich Juliane , Engelhardt Marina , Trufa Denis I. , Geppert Carol I. , Rieker Ralf J. , Sirbu Horia , Finotto Susetta
Published: March 2023

Supplementary Figure 2: Cytokines secreted from NFATc1Î"CD4 total lung cells did not influence lung tumour cell growth.
Figure S1 from CDKN2A/p16 Deletion in Head and Neck Cancer Cells Is Associated with CDK2 Activation, Replication Stress, and Vulnerability to CHK1 Inhibition
Authors: Gadhikar Mayur A. , Zhang Jiexin , Shen Li , Rao Xiayu , Wang Jing , Zhao Mei , Kalu Nene N. , Johnson Faye M. , Byers Lauren A. , Heymach John , Hittelman Walter N. , Udayakumar Durga , Pandita Raj K. , Pandita Tej K. , Pickering Curtis R. , Redwood Abena B. , Piwnica-Worms Helen , Schlacher Katharina , Frederick Mitchell J. , Myers Jeffrey N.
Published: March 2023

This file contains data showing phenotypic effects of prexasertib treatment in more sensitive and less sensitive cells, and the impact of high dose prexasertib on the cell cycle of less sensitive cells. This file is linked to main figure 1.
Figure S3 from High USP6NL Levels in Breast Cancer Sustain Chronic AKT Phosphorylation and GLUT1 Stability Fueling Aerobic Glycolysis
Authors: Avanzato Daniele , Pupo Emanuela , Ducano Nadia , Isella Claudio , Bertalot Giovanni , Luise Chiara , Pece Salvatore , Bruna Alejandra , Rueda Oscar M. , Caldas Carlos , Di Fiore Pier Paolo , Sapino Anna , Lanzetti Letizia
Published: March 2023

Effects of USP6NL silencing on receptor downregulation and AKT phosphorylation
Supplemental Info_untracked from UBE2N Promotes Melanoma Growth via MEK/FRA1/SOX10 Signaling
Authors: Dikshit Anushka , Jin Yingai J. , Degan Simone , Hwang Jihwan , Foster Matthew W. , Li Chuan-Yuan , Zhang Jennifer Y.
Published: March 2023

The Supplementary file contains supplementary methods, figures and tables that depict the importance of UBE2N, UBE2V1, and UBE2V2 in melanoma growth and progression.
Supplementary Table S1 from Network Modeling of microRNA–mRNA Interactions in Neuroblastoma Tumorigenesis Identifies miR-204 as a Direct Inhibitor of MYCN
Authors: Ooi Chi Yan , Carter Daniel R. , Liu Bing , Mayoh Chelsea , Beckers Anneleen , Lalwani Amit , Nagy Zsuzsanna , De Brouwer Sara , Decaesteker Bieke , Hung Tzong-Tyng , Norris Murray D. , Haber Michelle , Liu Tao , De Preter Katleen , Speleman Frank , Cheung Belamy B. , Marshall Glenn M.
Published: March 2023

mRNA and miRNA expression in 1 week, 2 week and 6 week wildtype or TH-MYCN+/+ ganglia or tumors
Supplementary Data from MDM2-Recruiting PROTAC Offers Superior, Synergistic Antiproliferative Activity via Simultaneous Degradation of BRD4 and Stabilization of p53
Authors: Hines John , Lartigue Schan , Dong Hanqing , Qian Yimin , Crews Craig M.
Published: March 2023

The Supplementary Materials and Methods describes the organic chemical routes employed to synthesize the PROTACs A1874, A1875 and A743. The procedures are explained in detail and the testing done to validate the chemical structures and purity are disclosed.
Supplementary Table 1 and 2 from Cancer-Associated Fibroblasts Produce Netrin-1 to Control Cancer Cell Plasticity
Authors: Sung Pei-Ju , Rama Nicolas , Imbach Jeromine , Fiore Stephany , Ducarouge Benjamin , Neves David , Chen Huei-Wen , Bernard David , Yang Pan-Chyr , Bernet Agnès , Depil Stephane , Mehlen Patrick
Published: March 2023

-Supplementary Table 1: list of primers -Supplementary Table 2: Tumor intake after engraftment of cancer cells alone or co-cultured with CAFs
Supplementary Figures 1-5 from Cancer-Associated Fibroblasts Produce Netrin-1 to Control Cancer Cell Plasticity
Authors: Sung Pei-Ju , Rama Nicolas , Imbach Jeromine , Fiore Stephany , Ducarouge Benjamin , Neves David , Chen Huei-Wen , Bernard David , Yang Pan-Chyr , Bernet Agnès , Depil Stephane , Mehlen Patrick
Published: March 2023

-Supplementary Fig1: image of co-culture CAF+cancer cells. -Supplementary Fig2: in vivo CLS1+CAF engraftment in response to netrin-1 mAb. -Supplementary Fig3: IL8 expression in co-cultures. -Supplementary Fig4: stemness marker in breast co-culture.. -SupplementaryFig5: ALDHA1 level in colorectal Lovo+CAFs.
Figure S3 from A Gene Expression Classifier from Whole Blood Distinguishes Benign from Malignant Lung Nodules Detected by Low-Dose CT
Authors: Kossenkov Andrew V. , Qureshi Rehman , Dawany Noor B. , Wickramasinghe Jayamanna , Liu Qin , Majumdar R. Sonali , Chang Celia , Widura Sandy , Kumar Trisha , Horng Wen-Hwai , Konnisto Eric , Criner Gerard , Tsay Jun-Chieh J. , Pass Harvey , Yendamuri Sai , Vachani Anil , Bauer Thomas , Nam Brian , Rom William N. , Showe Michael K. , Showe Louise C.
Published: March 2023

Comparison of Illumina and NanoString Classification
Supplementary Video S2_NME1_WT from Metastasis Suppressors NME1 and NME2 Promote Dynamin 2 Oligomerization and Regulate Tumor Cell Endocytosis, Motility, and Metastasis
Authors: Khan Imran , Gril Brunilde , Steeg Patricia S.
Published: March 2023

Endocytosis of pHrodo Red-EGF in NME1 (WT) expressing cells
Figure S1 from LINC00261 Is an Epigenetically Regulated Tumor Suppressor Essential for Activation of the DNA Damage Response
Authors: Shahabi Shandy , Kumaran Vishaly , Castillo Jonathan , Cong Zhengmin , Nandagopal Gopika , Mullen Daniel J. , Alvarado Alexander , Correa Michele Ramos , Saizan Autumn , Goel Riya , Bhat Amrita , Lynch Sean K. , Zhou Beiyun , Borok Zea , Marconett Crystal N.
Published: March 2023

Figure S1. Bioinformatic analysis of differential lncRNA expression in LUAD. A. Table of samples included in the initial analysis. AEC = Alveolar Epithelial Cells. B. Volcano plot of differential analysis for lncRNA expression.
Supplementary Data from Metastasis Suppressors NME1 and NME2 Promote Dynamin 2 Oligomerization and Regulate Tumor Cell Endocytosis, Motility, and Metastasis
Authors: Khan Imran , Gril Brunilde , Steeg Patricia S.
Published: March 2023

Supplementary methods and legends
Figure S2 from Mutant IDH Sensitizes Gliomas to Endoplasmic Reticulum Stress and Triggers Apoptosis via miR-183-Mediated Inhibition of Semaphorin 3E
Authors: Zhang Ying , Pusch Stefan , Innes James , Sidlauskas Kastytis , Ellis Matthew , Lau Joanne , El-Hassan Tedani , Aley Natasha , Launchbury Francesca , Richard-Loendt Angela , deBoer Jasper , Chen Sheng , Wang Lei , von Deimling Andreas , Li Ningning , Brandner Sebastian
Published: March 2023

Mutant IDH1 reduces expansion of stem cells in vivo
Supplementary Figure 4 from miR-450a Acts as a Tumor Suppressor in Ovarian Cancer by Regulating Energy Metabolism
Authors: Muys Bruna Rodrigues , Sousa Josane F. , Plaça Jessica Rodrigues , de Araújo Luíza Ferreira , Sarshad Aishe A. , Anastasakis Dimitrios G. , Wang Xiantao , Li Xiao Ling , de Molfetta Greice Andreotti , Ramão Anelisa , Lal Ashish , Vidal Daniel Onofre , Hafner Markus , Silva Wilson A.
Published: March 2023

Supplementary Figure 4. miR-450a effects on glutamine uptake and glutamate production.
Supplementary Figure 2 from miR-450a Acts as a Tumor Suppressor in Ovarian Cancer by Regulating Energy Metabolism
Authors: Muys Bruna Rodrigues , Sousa Josane F. , Plaça Jessica Rodrigues , de Araújo Luíza Ferreira , Sarshad Aishe A. , Anastasakis Dimitrios G. , Wang Xiantao , Li Xiao Ling , de Molfetta Greice Andreotti , Ramão Anelisa , Lal Ashish , Vidal Daniel Onofre , Hafner Markus , Silva Wilson A.
Published: March 2023

Supplementary Figure 2. miR-450b similar seed sequence and effects after its overexpression.
Supplementary Table S4 from tRNA Fragments Show Intertwining with mRNAs of Specific Repeat Content and Have Links to Disparities
Authors: Telonis Aristeidis G. , Loher Phillipe , Magee Rogan , Pliatsika Venetia , Londin Eric , Kirino Yohei , Rigoutsos Isidore
Published: March 2023

This file contains the significant correlations of nuclear tRFs with mRNAs.
Supplemental Fig. 3 from Inactivation of Bap1 Cooperates with Losses of Nf2 and Cdkn2a to Drive the Development of Pleural Malignant Mesothelioma in Conditional Mouse Models
Authors: Kukuyan Anna-Mariya , Sementino Eleonora , Kadariya Yuwaraj , Menges Craig W. , Cheung Mitchell , Tan Yinfei , Cai Kathy Q. , Slifker Michael J. , Peri Suraj , Klein-Szanto Andres J. , Rauscher Frank J. , Testa Joseph R.
Published: March 2023

RT-PCR analysis was performed on 13 of 16 PRC2 target genes indicated in the heatmap derived from the RNA-seq analysis of genes differentially expressed between malignant mesotheliomas (MMs) from Nf2;Cdkn2a double-CKO mice and Bap1;Nf2;Cdkn2a triple-CKO mice (Figure 6B). Four genes upregulated in MMs from Bap1;Nf2;Cdkn2a triple-CKO mice validated by RT-PCR are presented here, and 3 other genes up- or downregulated in these tumors are shown in Figure 6C.
Supplemental Fig. 1 from Inactivation of Bap1 Cooperates with Losses of Nf2 and Cdkn2a to Drive the Development of Pleural Malignant Mesothelioma in Conditional Mouse Models
Authors: Kukuyan Anna-Mariya , Sementino Eleonora , Kadariya Yuwaraj , Menges Craig W. , Cheung Mitchell , Tan Yinfei , Cai Kathy Q. , Slifker Michael J. , Peri Suraj , Klein-Szanto Andres J. , Rauscher Frank J. , Testa Joseph R.
Published: March 2023

Characterization of malignant mesothelioma (MM) from Bap1f/f mouse, which was detected 45 weeks after intrathoracic injection of Adeno-Cre virus. A, Immunoblot confirming loss of Bap1 expression in MM from Bap1 conditional knockout mouse 526, with tumor also showing greatly reduced expression of Nf2 and p16Ink4a as well as Akt activation when compared to normal mesothelial cells (NMC). B, Immunoblots of same lysates as in panel A showing Bap1-related loss of deubiquitination activity in MM 526, as indicated by presence of Ub-H2A in tumor but not in NMC, along with overexpression of product of PRC2 target gene Aldh1a2. In addition to acquired loss of Nf2 expression (panel A), MM 526 shows loss of p-Yap activity, indicative of aberrant Hippo signaling. C, Demonstration that loss of expression of Nf2 and p16Ink4a is acquired, not due to excision of floxed Nf2 and Cdkn2a alleles. Control WT and control Î"/Î" lanes depict sizes of wild type and homozygously floxed (Î"/Î") Bap1, Nf2, and Cdkn2a alleles. DNA from Bap1Î"/Î" mouse tail and matching MM from animal 526 verify that Bap1, but not Nf2 or Cdkn2a, has floxed alleles. Note that the primers used to detect mutant Bap1 allele were designed to bind outside the flox sites, such that a smaller band is seen when Cre recombinase excises Bap1 exon 7.
Supplementary Materials and Methods from Disruption of the Scaffolding Function of mLST8 Selectively Inhibits mTORC2 Assembly and Function and Suppresses mTORC2-Dependent Tumor Growth In Vivo
Authors: Hwang Yoonha , Kim Laura C. , Song Wenqiang , Edwards Deanna N. , Cook Rebecca S. , Chen Jin
Published: March 2023

Supplementary Materials and Methods
Supplementary Data from APE1 Upregulates MMP-14 via Redox-Sensitive ARF6-Mediated Recycling to Promote Cell Invasion of Esophageal Adenocarcinoma
Authors: Lu Heng , Bhat Ajaz A. , Peng Dunfa , Chen Zheng , Zhu Shoumin , Hong Jun , Maacha Selma , Yan Jin , Robbins David J. , Washington M. Kay , Belkhiri Abbes , El-Rifai Wael
Published: March 2023

Supplementary File containing supplementary Table 1 and five supplementary figures.
Table S3 from APC/C-CDH1–Regulated IDH3β Coordinates with the Cell Cycle to Promote Cell Proliferation
Authors: Wu Qingnan , Zhang Weimin , Xue Liyan , Wang Yan , Fu Ming , Ma Liying , Song Yongmei , Zhan Qi-Min
Published: March 2023

Supplementary Table S3 The clinicopathological characteristics of 340 ESCC samples.
Supplementary Figure 3 from Loss of the BCR-FGFR1 GEF Domain Suppresses RHOA Activation and Enhances B-Lymphomagenesis in Mice
Authors: Hu Tianxiang , Chong Yating , Lu Sumin , Qin Haiyan , Ren Mingqiang , Savage Natasha M. , Chang Chang-Sheng , Cowell John K
Published: March 2023

Representative flow cytometric analysis of GFP+ cells from the spleens of mice transplanted with cells transduced with either the empty vector (MIG), full length BCR-FGFR1 chimeric kinase or GEF deletion construct.
Supplementary Figure 1 from Loss of the BCR-FGFR1 GEF Domain Suppresses RHOA Activation and Enhances B-Lymphomagenesis in Mice
Authors: Hu Tianxiang , Chong Yating , Lu Sumin , Qin Haiyan , Ren Mingqiang , Savage Natasha M. , Chang Chang-Sheng , Cowell John K
Published: March 2023

Representative examples of flow cytometric analysis of successful engraftment after 2 weeks in four mice with bone marrow cells transduced with either the empty vector (MIG), full-length BCR-FGFR1 or the deletion GEF construct.
Figure S4 from Remodeling the Tumor Microenvironment Sensitizes Breast Tumors to Anti-Programmed Death-Ligand 1 Immunotherapy
Authors: Clift Renee , Souratha Jennifer , Garrovillo Sheryl A. , Zimmerman Susan , Blouw Barbara
Published: March 2023

Pegvorhyaluronidase alfa increased density of T-cells and NK cells and decreased the proportion of Gr1+ myeloid-derived suppressor cells in 4T1/HAS3 orthotopic breast tumors
Table S2 from Glutamate Decarboxylase 65 Signals through the Androgen Receptor to Promote Castration Resistance in Prostate Cancer
Authors: Gao Yi , Chen Lu , Du ZunGuo , Gao WenChao , Wu ZhengMing , Liu XiuJuan , Huang Hai , Xu DanFeng , Li QingQuan
Published: March 2023

Table S2 shows the AR interacting proteins in PC-CR4 cells
Supplementary Materials and Methods from Glutamate Decarboxylase 65 Signals through the Androgen Receptor to Promote Castration Resistance in Prostate Cancer
Authors: Gao Yi , Chen Lu , Du ZunGuo , Gao WenChao , Wu ZhengMing , Liu XiuJuan , Huang Hai , Xu DanFeng , Li QingQuan
Published: March 2023

Supplementary Materials and Methods shows the Extended materials and methods used in this study
Figure S3 from Glutamate Decarboxylase 65 Signals through the Androgen Receptor to Promote Castration Resistance in Prostate Cancer
Authors: Gao Yi , Chen Lu , Du ZunGuo , Gao WenChao , Wu ZhengMing , Liu XiuJuan , Huang Hai , Xu DanFeng , Li QingQuan
Published: March 2023

Figure S3 shows the impact of GAD65 knockdown on ATP levels or lipid/RNA biosynthesis of CRPC
Table S2 from Genetic Variants of VEGFA and FLT4 Are Determinants of Survival in Renal Cell Carcinoma Patients Treated with Sorafenib
Authors: Crona Daniel J. , Skol Andrew D. , Leppänen Veli-Matti , Glubb Dylan M. , Etheridge Amy S. , Hilliard Eleanor , Peña Carol E. , Peterson Yuri K. , Klauber-DeMore Nancy , Alitalo Kari K. , Innocenti Federico
Published: March 2023

Bioinformatic analyses.
Supplementary Data from A Multigene Assay Determines Risk of Recurrence in Patients with Triple-Negative Breast Cancer
Authors: Stewart Rachel L. , Updike Katherine L. , Factor Rachel E. , Henry N. Lynn , Boucher Kenneth M. , Bernard Philip S. , Varley Katherine E.
Published: March 2023

Supplementary Tables 1 and 2 include MHCII Immune Activation Assay Probe Sequences and Patient Demographic Data and Disease Characteristics
Supplementary Table 1 from Gene Editing of α6 Integrin Inhibits Muscle Invasive Networks and Increases Cell–Cell Biophysical Properties in Prostate Cancer
Authors: Rubenstein Cynthia S. , Gard Jaime M.C. , Wang Mengdie , McGrath Julie E. , Ingabire Nadia , Hinton James P. , Marr Kendra D. , Simpson Skyler J. , Nagle Raymond B. , Miranti Cindy K. , Warfel Noel A. , Garcia Joe G.N. , Arif-Tiwari Hina , Cress Anne E.
Published: March 2023

Integrin mutant increases cell-cell biophysical features
Supplemental Table 1 from Stearoyl-CoA Desaturase 1 Protects Ovarian Cancer Cells from Ferroptotic Cell Death
Authors: Tesfay Lia , Paul Bibbin T. , Konstorum Anna , Deng Zhiyong , Cox Anderson O. , Lee Jingyun , Furdui Cristina M. , Hegde Poornima , Torti Frank M. , Torti Suzy V.
Published: March 2023

Supplemental Table 1
Supplementary Table S1 and S2 from Chromosome 12p Amplification in Triple-Negative/BRCA1-Mutated Breast Cancer Associates with Emergence of Docetaxel Resistance and Carboplatin Sensitivity
Authors: Gómez-Miragaya Jorge , Díaz-Navarro Ander , Tonda Raul , Beltran Sergi , Palomero Luis , Palafox Marta , Dobrolecki Lacey E. , Huang Chen , Vasaikar Suhas , Zhang Bing , Wulf Gerburg M. , Collado-Sole Alejandro , Trinidad Eva M. , Muñoz Purificación , Paré Laia , Prat Aleix , Bruna Alejandra , Caldas Carlos , Arribas Joaquín , Soler-Monso María Teresa , Petit Anna , Balmaña Judith , Cruz Cristina , Serra Violeta , Pujana Miguel Angel , Lewis Michael T. , Puente Xose S. , González-Suárez Eva
Published: March 2023

Supplementary Table S1. Models, point mutations and CNA Supplementary Table S2. Differentially expressed genes, pathways and co-occurrence
Supplemental Figure 4 from Stearoyl-CoA Desaturase 1 Protects Ovarian Cancer Cells from Ferroptotic Cell Death
Authors: Tesfay Lia , Paul Bibbin T. , Konstorum Anna , Deng Zhiyong , Cox Anderson O. , Lee Jingyun , Furdui Cristina M. , Hegde Poornima , Torti Frank M. , Torti Suzy V.
Published: March 2023

Synergistic effect of SCD1 inhibitors and a ferroptosis inducer
Table S1-S4 and Figure S1-S4 from MALAT1 rs664589 Polymorphism Inhibits Binding to miR-194-5p, Contributing to Colorectal Cancer Risk, Growth, and Metastasis
Authors: Wu Shenshen , Sun Hao , Wang Yajie , Yang Xi , Meng Qingtao , Yang Hongbao , Zhu Haitao , Tang Weiyan , Li Xiaobo , Aschner Michael , Chen Rui
Published: March 2023

Table S1: Stratified analysis of MALAT1 rs664589 genotypes associated with colorectal cancer risk; Table S2: Association between MALAT1 rs664589 genotypes and colorectal cancer patient's survival; Table S3: Stratified analysis of MALAT1 rs664589 genotypes associated with colorectal cancer patient's survival; Table S4: Multivariate Cox regression analysis of MALAT1 expression and selected clinic pathologic variables with colorectal cancer survival. Figure S1: CRC cell lines with indicated genotypes were generated via CRISPR/cas9 strategy; Figure S2: MALAT1 rs664589 G allele associates with high MALAT level and poor survival of CRC patients; Figure S3: The predicted spatial structures of MALAT1 with indicated genotypes and Levels of miR-194-5p in CRC cells; Figure S4: Cellular distribution of MALAT1 was analyzed by in situ hybridization (ISH) of fresh paraffin-embedded sections
Supplementary Methods from A Model System for Studying the DNMT3A Hotspot Mutation (DNMT3AR882) Demonstrates a Causal Relationship between Its Dominant-Negative Effect and Leukemogenesis
Authors: Lu Rui , Wang Jun , Ren Zhihong , Yin Jiekai , Wang Yinsheng , Cai Ling , Wang Gang Greg
Published: March 2023

This document includes sections of Supplementary Methods and Material, Supplementary Figures Legends and related references
Supplementary Data from Upregulation of Myt1 Promotes Acquired Resistance of Cancer Cells to Wee1 Inhibition
Authors: Lewis Cody W. , Bukhari Amirali B. , Xiao Edric J. , Choi Won-Shik , Smith Joanne D. , Homola Ellen , Mackey John R. , Campbell Shelagh D. , Gamper Armin M. , Chan Gordon K.
Published: March 2023

figure legend for Suppl Figure 1-6; supple tables 1-3
Figure S5 from SIX2 Mediates Late-Stage Metastasis via Direct Regulation of SOX2 and Induction of a Cancer Stem Cell Program
Authors: Oliphant Michael U.J. , Vincent Melanie Y. , Galbraith Matthew D. , Pandey Ahwan , Zaberezhnyy Vadym , Rudra Pratyaydipta , Johnson Katherine R. , Costello James C. , Ghosh Debashis , DeGregori James , Espinosa Joaquin M. , Ford Heide L.
Published: March 2023

Six2 and Sox2 mRNA positively correlate in breast cancer patient samples and upregulates genes associated with stemness and poorer prognosis
Supplementary Figure 2 and 3 from Local Delivery of Ox40l, Cd80, and Cd86 mRNA Kindles Global Anticancer Immunity
Authors: Haabeth Ole Audun Werner , Blake Timothy R. , McKinlay Colin J. , Tveita Anders A. , Sallets Adrienne , Waymouth Robert M. , Wender Paul A. , Levy Ronald
Published: March 2023

Supplementary Figure S2. OX40L, CD80 and CD86 mRNA-CART treatment induce long lasting protection against re-challenge with the same tumor cell line. Supplementary Figure S3. OX40L, CD80 and CD86 mRNA-CART treatment do not result in long term elevated levels of pro-inflammatory cytokines in serum of treated mice.
Supplementary Figs 1-7 from Tumor-Derived Thymic Stromal Lymphopoietin Expands Bone Marrow B-cell Precursors in Circulation to Support Metastasis
Authors: Ragonnaud Emeline , Moritoh Kanako , Bodogai Monica , Gusev Fedor , Garaud Soizic , Chen Chen , Wang Xin , Baljinnyam Tuvshintugs , Becker Kevin G. , Maul Robert W. , Willard-Gallo Karen , Rogaev Evgeny , Biragyn Arya
Published: March 2023

Suppl. Fig. 1-7
Figure S1 from Identification of Coding and Long Noncoding RNAs Differentially Expressed in Tumors and Preferentially Expressed in Healthy Tissues
Authors: Unfried Juan P. , Serrano Guillermo , Suárez Beatriz , Sangro Paloma , Ferretti Valeria , Prior Celia , Boix Loreto , Bruix Jordi , Sangro Bruno , Segura Víctor , Fortes Puri
Published: March 2023

Analysis of the absolute fold change of the top deregulated candidates. A. Percentage of upregulated and downregulated coding and long non-coding transcripts versus the total number of coding and long non-coding transcripts, respectively, deregulated in each tumor. B. Absolute fold change (log2) of the top 100 coding and non-coding transcripts upregulated or downregulated in the indicated tumor. The mean is indicated with a red (upregulated) or a blue (downregulated) line. Statistical analysis was done with ANOVA-test followed by Dunn's multiple comparisons test. C. The mean of the absolute fold change (log 2) of the top 100 coding (COD) and long non-coding (LNC) transcripts is indicated for each tumor.
Figure S5 from Diminished AHR Signaling Drives Human Acute Myeloid Leukemia Stem Cell Maintenance
Authors: Ly Michelle , Rentas Stefan , Vujovic Ana , Wong Nicholas , Moreira Steven , Xu Joshua , Holzapfel Nicholas , Bhatia Sonam , Tran Damian , Minden Mark D. , Draper Jonathan S. , Hope Kristin J.
Published: March 2023

This figure shows the expression of Cyp1b1 as a function of xenograft responsiveness to FICZ and the anti-correlation of Cyp1b1 and MSI2 expression across primary AMLs
Figure S4 from A Microbial Siderophore-Inspired Self-Gelling Hydrogel for Noninvasive Anticancer Phototherapy
Authors: Ko Seungbeom , Park Joo Yeon , Oh Yu-Kyoung
Published: March 2023

Retention of hydrogel
Figure S2 from A Microbial Siderophore-Inspired Self-Gelling Hydrogel for Noninvasive Anticancer Phototherapy
Authors: Ko Seungbeom , Park Joo Yeon , Oh Yu-Kyoung
Published: March 2023

Synthesis of HA-GA
Figure S6 from The Highly Recurrent PP2A Aα-Subunit Mutation P179R Alters Protein Structure and Impairs PP2A Enzyme Function to Promote Endometrial Tumorigenesis
Authors: Taylor Sarah E. , O'Connor Caitlin M. , Wang Zhizhi , Shen Guobo , Song Haichi , Leonard Daniel , Sangodkar Jaya , LaVasseur Corinne , Avril Stefanie , Waggoner Steven , Zanotti Kristine , Armstrong Amy J. , Nagel Christa , Resnick Kimberly , Singh Sareena , Jackson Mark W. , Xu Wenqing , Haider Shozeb , DiFeo Analisa , Narla Goutham
Published: March 2023

Supplemental data for the investigations of tumorigenic phenotypes in the UT89 and UT42 isogenic cell line model systems
Figure S1 from Metformin Inhibits Progression of Head and Neck Squamous Cell Carcinoma by Acting Directly on Carcinoma-Initiating Cells
Authors: Wu Xingyu , Yeerna Huwate , Goto Yusuke , Ando Toshinori , Wu Victoria H. , Zhang Xuefeng , Wang Zhiyong , Amornphimoltham Panomwat , Murphy Anne N. , Tamayo Pablo , Chen Qianming , Lippman Scott M. , Gutkind J. Silvio
Published: March 2023

The inhibitory effect of metformin on mTOR signaling and cell viability in CAL27 and SCC47 cells.
Supplementary Fig S4 from Metastatic Tumor-in-a-Dish, a Novel Multicellular Organoid to Study Lung Colonization and Predict Therapeutic Response
Authors: Ramamoorthy Prabhu , Thomas Sufi Mary , Kaushik Gaurav , Subramaniam Dharmalingam , Chastain Katherine M. , Dhar Animesh , Tawfik Ossama , Kasi Anup , Sun Weijing , Ramalingam Satish , Gunewardena Sumedha , Umar Shahid , Mammen Joshua M. , Padhye Subhash B. , Weir Scott J. , Jensen Roy A. , Sittampalam G. Sitta , Anant Shrikant
Published: March 2023

The mTiD platform can be used to assess prevention of lung colonization by tumor cells.
Figure S6 from ERRα Expression in Bone Metastases Leads to an Exacerbated Antitumor Immune Response
Authors: Bouchet Mathilde , Lainé Alexandra , Boyault Cyril , Proponnet-Guerault Mathilde , Meugnier Emmanuelle , Bouazza Lamia , Kan Casina W.S. , Geraci Sandra , El-Moghrabi Soumaya , Hernandez-Vargas Hector , Benetollo Claire , Yoshiko Yuji , Duterque-Coquillaud Martine , Clézardin Philippe , Marie Julien C. , Bonnelye Edith
Published: March 2023

ChIP-seq data analysis for ERRa binding sites
Table S1 from EZH2 Inhibitor GSK126 Suppresses Antitumor Immunity by Driving Production of Myeloid-Derived Suppressor Cells
Authors: Huang Shuo , Wang Zhongyu , Zhou Jie , Huang Jiani , Zhou Li , Luo Jing , Wan Yisong Y. , Long Haixia , Zhu Bo
Published: March 2023

List of antibodies and primers used in the study
Figure S3 from Targeting APLN/APLNR Improves Antiangiogenic Efficiency and Blunts Proinvasive Side Effects of VEGFA/VEGFR2 Blockade in Glioblastoma
Authors: Mastrella Giorgia , Hou Mengzhuo , Li Min , Stoecklein Veit M. , Zdouc Nina , Volmar Marie N.M. , Miletic Hrvoje , Reinhard Sören , Herold-Mende Christel C. , Kleber Susanne , Eisenhut Katharina , Gargiulo Gaetano , Synowitz Michael , Vescovi Angelo L. , Harter Patrick N. , Penninger Josef M. , Wagner Ernst , Mittelbronn Michel , Bjerkvig Rolf , Hambardzumyan Dolores , Schüller Ulrich , Tonn Jörg-Christian , Radke Josefine , Glass Rainer , Kälin Roland E.
Published: March 2023

APLNR expression is upregulated in the infiltrating tumor zone in glioblastoma.
Supplementary Figure 2 from Natural Killer–Derived Exosomal miR-186 Inhibits Neuroblastoma Growth and Immune Escape Mechanisms
Authors: Neviani Paolo , Wise Petra M. , Murtadha Mariam , Liu Cathy W. , Wu Chun-Hua , Jong Ambrose Y. , Seeger Robert C. , Fabbri Muller
Published: March 2023

Predicted target genes of miR-186 and their validation
Supplementary Data from p53-Suppressed Oncogene TET1 Prevents Cellular Aging in Lung Cancer
Authors: Filipczak Piotr T. , Leng Shuguang , Tellez Carmen S. , Do Kieu C. , Grimes Marcie J. , Thomas Cynthia L. , Walton-Filipczak Stephanie R. , Picchi Maria A. , Belinsky Steven A.
Published: March 2023

Fig. S6. Growth inhibition and senescence induced in p53 mutated NSCLC cells by TET1 depletion in conjunction with chemotherapy.
Supplementary Tables 5-9 from Nod1 Imprints Inflammatory and Carcinogenic Responses toward the Gastric Pathogen Helicobacter pylori
Authors: Suarez Giovanni , Romero-Gallo Judith , Piazuelo Maria B. , Sierra Johanna C. , Delgado Alberto G. , Washington M. Kay , Shah Shailja C. , Wilson Keith T. , Peek Richard M.
Published: March 2023

Mouse NF-kB RT2 profiler PCR array of gastroids following infection with either H. pylori strain PMSS1 or 7.13.
Supplementary Figure 1 from Nod1 Imprints Inflammatory and Carcinogenic Responses toward the Gastric Pathogen Helicobacter pylori
Authors: Suarez Giovanni , Romero-Gallo Judith , Piazuelo Maria B. , Sierra Johanna C. , Delgado Alberto G. , Washington M. Kay , Shah Shailja C. , Wilson Keith T. , Peek Richard M.
Published: March 2023

RT2 profiler PCR array analysis for NF-kB gene targets in primary gastric epithelial cell organoids induced by strain 7.13
Supplementary Table 4 from MDH1 and MPP7 Regulate Autophagy in Pancreatic Ductal Adenocarcinoma
Authors: New Maria , Van Acker Tim , Sakamaki Jun-Ichi , Jiang Ming , Saunders Rebecca E. , Long Jaclyn , Wang Victoria M.-Y. , Behrens Axel , Cerveira Joana , Sudhakar Padhmanand , Korcsmaros Tamas , Jefferies Harold B.J. , Ryan Kevin M. , Howell Michael , Tooze Sharon A.
Published: March 2023

LC3 puncta parameters in PK-1 cells
Supplementary table 1 from RIPK3-Induced Inflammation by I-MDSCs Promotes Intestinal Tumors
Authors: Jayakumar Asha , Bothwell Alfred L.M.
Published: March 2023

Tumor conditioned medium and GM-CSF contribute to features of I-MDSCs
Supplementary methods from RIPK3-Induced Inflammation by I-MDSCs Promotes Intestinal Tumors
Authors: Jayakumar Asha , Bothwell Alfred L.M.
Published: March 2023

Supplementary methods
Supplementary figure 6 from RIPK3-Induced Inflammation by I-MDSCs Promotes Intestinal Tumors
Authors: Jayakumar Asha , Bothwell Alfred L.M.
Published: March 2023

TLR expression on MDSCs and viability
Supplementary Figure 3 from MDH1 and MPP7 Regulate Autophagy in Pancreatic Ductal Adenocarcinoma
Authors: New Maria , Van Acker Tim , Sakamaki Jun-Ichi , Jiang Ming , Saunders Rebecca E. , Long Jaclyn , Wang Victoria M.-Y. , Behrens Axel , Cerveira Joana , Sudhakar Padhmanand , Korcsmaros Tamas , Jefferies Harold B.J. , Ryan Kevin M. , Howell Michael , Tooze Sharon A.
Published: March 2023

Levels of MDH1, MPP7 and downstream autophagy regulators ULK1 and YAP1 affect PDAC cell survival
Supplementary figure 4 from RIPK3-Induced Inflammation by I-MDSCs Promotes Intestinal Tumors
Authors: Jayakumar Asha , Bothwell Alfred L.M.
Published: March 2023

Suppressive function and surface marker analysis of BM-MDSCs
Supplementary Data 1 from RUNX1 Is a Driver of Renal Cell Carcinoma Correlating with Clinical Outcome
Authors: Rooney Nicholas , Mason Susan M. , McDonald Laura , Däbritz J. Henry M. , Campbell Kirsteen J. , Hedley Ann , Howard Steven , Athineos Dimitris , Nixon Colin , Clark William , Leach Joshua D.G. , Sansom Owen J. , Edwards Joanne , Cameron Ewan R. , Blyth Karen
Published: March 2023

RNAseq data set
Supplementary Methods on Data Analysis from MDM2 and MDM4 Are Therapeutic Vulnerabilities in Malignant Rhabdoid Tumors
Authors: Howard Thomas P. , Arnoff Taylor E. , Song Melinda R. , Giacomelli Andrew O. , Wang Xiaofeng , Hong Andrew L. , Dharia Neekesh V. , Wang Su , Vazquez Francisca , Pham Minh-Tam , Morgan Ann M. , Wachter Franziska , Bird Gregory H. , Kugener Guillaume , Oberlick Elaine M. , Rees Matthew G. , Tiv Hong L. , Hwang Justin H. , Walsh Katherine H. , Cook April , Krill-Burger John M. , Tsherniak Aviad , Gokhale Prafulla C. , Park Peter J. , Stegmaier Kimberly , Walensky Loren D. , Hahn William C. , Roberts Charles W.M.
Published: March 2023

Expanded methodological detail on large-scale data analysis (RNAi, CRISPR-Cas9, p53 status annotations, RNA-seq, and primary tumor expression).
Supplementary Figure 1 from Biophysicochemical Motifs in T-cell Receptor Sequences Distinguish Repertoires from Tumor-Infiltrating Lymphocyte and Adjacent Healthy Tissue
Authors: Ostmeyer Jared , Christley Scott , Toby Inimary T. , Cowell Lindsay G.
Published: March 2023

HLA information for crystal structures