bluuebunny/crossref_metadata_2025 huggingface dataset:
Supplementary Figure S1 from Tumor Tissue- versus Plasma-based Genotyping for Selection of Matched Therapy and Impact on Clinical Outcomes in Patients with Metastatic Breast Cancer
Authors: Vidula Neelima , Niemierko Andrzej , Malvarosa Giuliana , Yuen Megan , Lennerz Jochen , Iafrate A. John , Wander Seth A. , Spring Laura , Juric Dejan , Isakoff Steven , Younger Jerry , Moy Beverly , Ellisen Leif W. , Bardia Aditya
Published: April 2023

Supplemental Figure S1. Consort diagram of patients included in this study.
Supplementary Tables from Next-Generation Sequencing of 487 Esophageal Adenocarcinomas Reveals Independently Prognostic Genomic Driver Alterations and Pathways
Authors: Sihag Smita , Nussenzweig Samuel C. , Walch Henry S. , Hsu Meier , Tan Kay See , Sanchez-Vega Francisco , Chatila Walid K. , De La Torre Sergio A. , Patel Assem , Janjigian Yelena Y. , Maron Steven , Ku Geoffrey Y. , Tang Laura H. , Hechtman Jaclyn , Shah Pari M. , Wu Abraham J. , Jones David R. , Molena Daniela , Solit David B. , Schultz Nikolaus , Berger Michael F.
Published: April 2023

Supplementary Tables 1 and 2
Table S1 from Clinical Validation of a Machine-learning–derived Signature Predictive of Outcomes from First-line Oxaliplatin-based Chemotherapy in Advanced Colorectal Cancer
Authors: Abraham Jim P. , Magee Daniel , Cremolini Chiara , Antoniotti Carlotta , Halbert David D. , Xiu Joanne , Stafford Phillip , Berry Donald A. , Oberley Matthew J. , Shields Anthony F. , Marshall John L. , Salem Mohamed E. , Falcone Alfredo , Grothey Axel , Hall Michael J. , Venook Alan P. , Lenz Heinz-Josef , Helmstetter Anthony , Korn W. Michael , Spetzler David B.
Published: April 2023

Demographics of the cases used in algorithm training.
Supplementary Figure 1 from Next-Generation Sequencing of 487 Esophageal Adenocarcinomas Reveals Independently Prognostic Genomic Driver Alterations and Pathways
Authors: Sihag Smita , Nussenzweig Samuel C. , Walch Henry S. , Hsu Meier , Tan Kay See , Sanchez-Vega Francisco , Chatila Walid K. , De La Torre Sergio A. , Patel Assem , Janjigian Yelena Y. , Maron Steven , Ku Geoffrey Y. , Tang Laura H. , Hechtman Jaclyn , Shah Pari M. , Wu Abraham J. , Jones David R. , Molena Daniela , Solit David B. , Schultz Nikolaus , Berger Michael F.
Published: April 2023

Alterations in esophageal adenocarcinoma in the TCGA dataset, and mapping of alterations onto the RTK-RAS and Cell Cycle pathways.
Supplementary Methods from Genomic Characterization of de novo Metastatic Breast Cancer
Authors: Garrido-Castro Ana C. , Spurr Liam F. , Hughes Melissa E. , Li Yvonne Y. , Cherniack Andrew D. , Kumari Priti , Lloyd Maxwell R. , Bychkovsky Brittany , Barroso-Sousa Romualdo , Di Lascio Simona , Jain Esha , Files Janet , Mohammed-Abreu Ayesha , Krevalin Max , MacKichan Colin , Barry William T. , Guo Hao , Xia Daniel , Cerami Ethan , Rollins Barrett J. , MacConaill Laura E. , Lindeman Neal I. , Krop Ian E. , Johnson Bruce E. , Wagle Nikhil , Winer Eric P. , Dillon Deborah A. , Lin Nancy U.
Published: April 2023

Supplementary Methods
Supplementary Figures from Genomic Characterization of de novo Metastatic Breast Cancer
Authors: Garrido-Castro Ana C. , Spurr Liam F. , Hughes Melissa E. , Li Yvonne Y. , Cherniack Andrew D. , Kumari Priti , Lloyd Maxwell R. , Bychkovsky Brittany , Barroso-Sousa Romualdo , Di Lascio Simona , Jain Esha , Files Janet , Mohammed-Abreu Ayesha , Krevalin Max , MacKichan Colin , Barry William T. , Guo Hao , Xia Daniel , Cerami Ethan , Rollins Barrett J. , MacConaill Laura E. , Lindeman Neal I. , Krop Ian E. , Johnson Bruce E. , Wagle Nikhil , Winer Eric P. , Dillon Deborah A. , Lin Nancy U.
Published: April 2023

Figures S1-S14
Supplementary Materials IV: Supplementary Figures S71-106 from Discrimination of Breast Cancer from Healthy Breast Tissue Using a Three-component Diffusion-weighted MRI Model
Authors: Andreassen Maren M. Sjaastad , Rodríguez-Soto Ana E. , Conlin Christopher C. , Vidić Igor , Seibert Tyler M. , Wallace Anne M. , Zare Somaye , Kuperman Joshua , Abudu Boya , Ahn Grace S. , Hahn Michael , Jerome Neil P. , Østlie Agnes , Bathen Tone F. , Ojeda-Fournier Haydee , Goa Pål Erik , Rakow-Penner Rebecca , Dale Anders M.
Published: April 2023

Probability density colormaps for the three-component model given C1 and C2 for all voxels per patient for (A.) cancer (cancer ROI) and (B.) healthy breast tissue (control ROI).
Figure S6 from Exposure–Toxicity Association of Cyclophosphamide and Its Metabolites in Infants and Young Children with Primary Brain Tumors: Implications for Dosing
Authors: Campagne Olivia , Zhong Bo , Nair Sreenath , Lin Tong , Huang Jie , Onar-Thomas Arzu , Robinson Giles , Gajjar Amar , Stewart Clinton F.
Published: April 2023

Correlation between drug exposures at 24h and total drug exposures
Supplementary File 1 from Using Machine Learning Algorithms to Predict Immunotherapy Response in Patients with Advanced Melanoma
Authors: Johannet Paul , Coudray Nicolas , Donnelly Douglas M. , Jour George , Illa-Bochaca Irineu , Xia Yuhe , Johnson Douglas B. , Wheless Lee , Patrinely James R. , Nomikou Sofia , Rimm David L. , Pavlick Anna C. , Weber Jeffrey S. , Zhong Judy , Tsirigos Aristotelis , Osman Iman
Published: April 2023

Deidentified patient clinical and demographic characteristics
Supplementary Data from Comparison of Haploidentical Bone Marrow versus Matched Unrelated Donor Peripheral Blood Stem Cell Transplantation with Posttransplant Cyclophosphamide in Patients with Acute Leukemia
Authors: Nagler Arnon , Labopin Myriam , Dholaria Bhagirathbhai , Angelucci Emanuele , Afanasyev Boris , Cornelissen Jan J. , Sica Simona , Meijer Ellen , Ciceri Fabio , Van Gorkom Gwendolyn , Kröger Nicolaus , Martin Hans , Pioltelli Pietro , Risitano Antonio , Canaani Jonathan , Savani Bipin N. , Sanz Jaime , Mohty Mohamad
Published: April 2023

Supplementary Data
Supplementary Figure S2 from Inhibition of MDSC Trafficking with SX-682, a CXCR1/2 Inhibitor, Enhances NK-Cell Immunotherapy in Head and Neck Cancer Models
Authors: Greene Sarah , Robbins Yvette , Mydlarz Wojciech K. , Huynh Angel P. , Schmitt Nicole C. , Friedman Jay , Horn Lucas A. , Palena Claudia , Schlom Jeffrey , Maeda Dean Y. , Zebala John A. , Clavijo Paul E. , Allen Clint
Published: April 2023

Supplemental Figure S2. PMN-MDSC can be isolated from tumor single cell suspensions
Supplementary Table S2 from FGFR Inhibition Overcomes Resistance to EGFR-targeted Therapy in Epithelial-like Cutaneous Carcinoma
Authors: Bernat-Peguera Adrià , Navarro-Ventura Juan , Lorenzo-Sanz Laura , da Silva-Diz Victoria , Bosio Mattia , Palomero Luis , Penin Rosa M. , Pérez Sidelnikova Diana , Bermejo Josep Oriol , Taberna Miren , Vilariño Noelia , Piulats Josep M. , Mesia Ricard , Viñals Joan Maria , González-Suárez Eva , Capella-Gutierrez Salvador , Villanueva Alberto , Viñals Francesc , Muñoz Purificación
Published: April 2023

Summary of the mutational state of the expressed genes in each control SCC-PDX, and the acquired mutations in GefR and GefT SCC-PDXs, as compared to their respective control PDXs
Supplementary Data from BRAF-Mutant Transcriptional Subtypes Predict Outcome of Combined BRAF, MEK, and EGFR Blockade with Dabrafenib, Trametinib, and Panitumumab in Patients with Colorectal Cancer
Authors: Middleton Gary , Yang Yiqun , Campbell Catarina D. , André Thierry , Atreya Chloe E. , Schellens Jan H.M. , Yoshino Takayuki , Bendell Johanna C. , Hollebecque Antoine , McRee Autumn J. , Siena Salvatore , Gordon Michael S. , Tabernero Josep , Yaeger Rona , O'Dwyer Peter J. , De Vos Filip , Van Cutsem Eric , Millholland John M. , Brase Jan C. , Rangwala Fatima , Gasal Eduard , Corcoran Ryan B.
Published: April 2023

Supplementary Data
Supplementary Table S1 from FGFR Inhibition Overcomes Resistance to EGFR-targeted Therapy in Epithelial-like Cutaneous Carcinoma
Authors: Bernat-Peguera Adrià , Navarro-Ventura Juan , Lorenzo-Sanz Laura , da Silva-Diz Victoria , Bosio Mattia , Palomero Luis , Penin Rosa M. , Pérez Sidelnikova Diana , Bermejo Josep Oriol , Taberna Miren , Vilariño Noelia , Piulats Josep M. , Mesia Ricard , Viñals Joan Maria , González-Suárez Eva , Capella-Gutierrez Salvador , Villanueva Alberto , Viñals Francesc , Muñoz Purificación
Published: April 2023

This table summarizes clinical information of patient cSCC samples used for PDXs generation, and results of the analysis of Gene expression changes in GefR SCC-PDXs vs control SCC-PDXs.
Supplementary Data from FGFR Inhibition Overcomes Resistance to EGFR-targeted Therapy in Epithelial-like Cutaneous Carcinoma
Authors: Bernat-Peguera Adrià , Navarro-Ventura Juan , Lorenzo-Sanz Laura , da Silva-Diz Victoria , Bosio Mattia , Palomero Luis , Penin Rosa M. , Pérez Sidelnikova Diana , Bermejo Josep Oriol , Taberna Miren , Vilariño Noelia , Piulats Josep M. , Mesia Ricard , Viñals Joan Maria , González-Suárez Eva , Capella-Gutierrez Salvador , Villanueva Alberto , Viñals Francesc , Muñoz Purificación
Published: April 2023

Supplementary Figures and legend figures Supplementary Methods
Supplementary Figure 3 from Angiokines Associated with Targeted Therapy Outcomes in Patients with Non–Clear Cell Renal Cell Carcinoma
Authors: Armstrong Andrew J. , Nixon Andrew B. , Carmack Andrea , Yang Qian , Eisen Tim , Stadler Walter M. , Jones Robert J. , Garcia Jorge A. , Vaishampayan Ulka N. , Picus Joel , Hawkins Robert E. , Hainsworth John D. , Kollmannsberger Christian K. , Logan Theodore F. , Puzanov Igor , Pickering Lisa M. , Ryan Christopher W. , Protheroe Andrew , George Daniel J. , Halabi Susan
Published: April 2023

Supplementary Figure 3. Kaplan-Meier OS curves by dichotomized angiokines: VEGF-D, VEGF, VEGF-R1, PDGF-AA, TGF-b1, VEGF-R3, HER-3, BMP-9, CD-73, VEGF-R2, TGF-b2, SDF-1, PDGF-BB, and TGFb-R3
Supplementary Figure 6 from AMG 757, a Half-Life Extended, DLL3-Targeted Bispecific T-Cell Engager, Shows High Potency and Sensitivity in Preclinical Models of Small-Cell Lung Cancer
Authors: Giffin Michael J. , Cooke Keegan , Lobenhofer Edward K. , Estrada Juan , Zhan Jinghui , Deegen Petra , Thomas Melissa , Murawsky Christopher M. , Werner Jonathan , Liu Siyuan , Lee Fei , Homann Oliver , Friedrich Matthias , Pearson Joshua T. , Raum Tobias , Yang Yajing , Caenepeel Sean , Stevens Jennitte , Beltran Pedro J. , Canon Jude , Coxon Angela , Bailis Julie M. , Hughes Paul E.
Published: April 2023

Supplementary Figure 6 A, Expression of human CD25, CD69, PD-1, and 4-1BB on human CD4+ T cells isolated from mouse lungs harboring SHP-77 tumors 168 hours after treatment with AMG 757 or a control HLE BiTE® molecule. B, Expression of human CD25, CD69, PD-1, and 4-1BB on human CD8+ T cells isolated from mouse lungs harboring SHP-77 tumors 168 hours after treatment with either AMG 757 or a control HLE BiTE® molecule. *P < 0.05; **P < 0.01; *** P< 0.001;
Supplementary Figure 5 from AMG 757, a Half-Life Extended, DLL3-Targeted Bispecific T-Cell Engager, Shows High Potency and Sensitivity in Preclinical Models of Small-Cell Lung Cancer
Authors: Giffin Michael J. , Cooke Keegan , Lobenhofer Edward K. , Estrada Juan , Zhan Jinghui , Deegen Petra , Thomas Melissa , Murawsky Christopher M. , Werner Jonathan , Liu Siyuan , Lee Fei , Homann Oliver , Friedrich Matthias , Pearson Joshua T. , Raum Tobias , Yang Yajing , Caenepeel Sean , Stevens Jennitte , Beltran Pedro J. , Canon Jude , Coxon Angela , Bailis Julie M. , Hughes Paul E.
Published: April 2023

Supplementary Figure 5 A, DLL3 RNA expression levels in a panel of SCLC patient-derived xenograft (PDX) models compared with positive (NCI-H82) and negative (NCI-H460) control SCLC cell lines. Data are reported as relative quantification normalized to NCI-H460 cell line expression. B, DLL3 protein expression levels in a panel of SCLC PDX models compared with positive (NCI-H82) and negative (NCI-H460) control SCLC cell lines. GAPDH, glyceraldehyde 3-phosphate dehydrogenase.
Supplementary Table 1 from Targeting DNA Repair to Drive Immune Responses: It's Time to Reconsider the Strategy for Clinical Translation
Authors: Takahashi Nobuyuki , Surolia Ira , Thomas Anish
Published: April 2023

Trials of PARPi, ICB, and the combination
Supplementary Methods from Safety and Immunogenicity of LY3415244, a Bispecific Antibody Against TIM-3 and PD-L1, in Patients With Advanced Solid Tumors
Authors: Hellmann Matthew D. , Bivi Nicoletta , Calderon Boris , Shimizu Toshio , Delafontaine Brant , Liu Zhuqing Tina , Szpurka Anna M. , Copeland Victoria , Hodi F. Stephen , Rottey Sylvie , Aftimos Philippe , Piao Yongzhe , Gandhi Leena , Galvao Violeta Regnier , Leow Ching Ching , Doi Toshihiko
Published: April 2023

Supplemental methods describing immunogenicity testing and epitope specificity methods.
Supplemental Table 4 from Safety and Immunogenicity of LY3415244, a Bispecific Antibody Against TIM-3 and PD-L1, in Patients With Advanced Solid Tumors
Authors: Hellmann Matthew D. , Bivi Nicoletta , Calderon Boris , Shimizu Toshio , Delafontaine Brant , Liu Zhuqing Tina , Szpurka Anna M. , Copeland Victoria , Hodi F. Stephen , Rottey Sylvie , Aftimos Philippe , Piao Yongzhe , Gandhi Leena , Galvao Violeta Regnier , Leow Ching Ching , Doi Toshihiko
Published: April 2023

This table describes details of the anti-drug antibody epitope specificity analysis.
Supplementary Methods from Relevance of Molecular Groups in Children with Newly Diagnosed Atypical Teratoid Rhabdoid Tumor: Results from Prospective St. Jude Multi-institutional Trials
Authors: Upadhyaya Santhosh A. , Robinson Giles W. , Onar-Thomas Arzu , Orr Brent A. , Johann Pascal , Wu Gang , Billups Catherine A. , Tatevossian Ruth G. , Dhanda Sandeep Kumar , Srinivasan Ashok , Broniscer Alberto , Qaddoumi Ibrahim , Vinitsky Anna , Armstrong Gregory T. , Bendel Anne E. , Hassall Tim , Partap Sonia , Fisher Paul G. , Crawford John R. , Chintagumpala Murali , Bouffet Eric , Gururangan Sridharan , Mostafavi Roya , Sanders Robert P. , Klimo Paul , Patay Zoltan , Indelicato Daniel J. , Nichols Kim E. , Boop Frederick A. , Merchant Thomas E. , Kool Marcel , Ellison David W. , Gajjar Amar
Published: April 2023

Germline methodology
Table S2 from Comparative Genomics Reveals Distinct Immune-oncologic Pathways in African American Men with Prostate Cancer
Authors: Awasthi Shivanshu , Berglund Anders , Abraham-Miranda Julieta , Rounbehler Robert J. , Kensler Kevin , Serna Amparo , Vidal Adriana , You Sungyong , Freeman Michael R. , Davicioni Elai , Liu Yang , Karnes R. Jeffrey , Klein Eric A. , Den Robert B. , Trock Bruce J. , Campbell Joshua D. , Einstein David J. , Gupta Raavi , Balk Steven , Lal Priti , Park Jong Y. , Cleveland John L. , Rebbeck Timothy R. , Freedland Stephen J. , Yamoah Kosj
Published: April 2023

Table S2
Figure S3 from Comparative Genomics Reveals Distinct Immune-oncologic Pathways in African American Men with Prostate Cancer
Authors: Awasthi Shivanshu , Berglund Anders , Abraham-Miranda Julieta , Rounbehler Robert J. , Kensler Kevin , Serna Amparo , Vidal Adriana , You Sungyong , Freeman Michael R. , Davicioni Elai , Liu Yang , Karnes R. Jeffrey , Klein Eric A. , Den Robert B. , Trock Bruce J. , Campbell Joshua D. , Einstein David J. , Gupta Raavi , Balk Steven , Lal Priti , Park Jong Y. , Cleveland John L. , Rebbeck Timothy R. , Freedland Stephen J. , Yamoah Kosj
Published: April 2023

Association of ICS subtypes and race in A. Discovery, B. DVAHS validation and C. TCGA dataset.
Supplementary Data from Proteogenomic Analysis of Salivary Adenoid Cystic Carcinomas Defines Molecular Subtypes and Identifies Therapeutic Targets
Authors: Ferrarotto Renata , Mitani Yoshitsugu , McGrail Daniel J. , Li Kaiyi , Karpinets Tatiana V. , Bell Diana , Frank Steven J. , Song Xingzhi , Kupferman Michael E. , Liu Bin , Lee J. Jack , Glisson Bonnie S. , Zhang Jianhua , Aster Jon C. , Lin Shiaw-Yih , Futreal P. Andrew , Heymach John V. , El-Naggar Adel K.
Published: April 2023

1 supplementary method, 3 supplementary tables and 7 supplementary figures
Supplementary Appendix from Capecitabine and Temozolomide versus FOLFIRI in RAS-Mutated, MGMT-Methylated Metastatic Colorectal Cancer
Authors: Pietrantonio Filippo , Lobefaro Riccardo , Antista Maria , Lonardi Sara , Raimondi Alessandra , Morano Federica , Mosconi Stefania , Rimassa Lorenza , Murgioni Sabina , Sartore-Bianchi Andrea , Tomasello Gianluca , Longarini Raffaella , Farina Gabriella , Petrelli Fausto , Gori Stefania , Randon Giovanni , Corallo Salvatore , Pagani Filippo , Guarini Vincenzo , Palermo Federica , Martinetti Antonia , Macagno Marco , Barault Ludovic , Perrone Federica , Tamborini Elena , Milione Massimo , Di Nicolantonio Federica , Di Maio Massimo , Fucà Giovanni , Di Bartolomeo Maria , de Braud Filippo
Published: April 2023

Supplementary Appendix S1 Supplementary Appendix S2
Supplementary Methods and Tables from The PSMA-targeting Half-life Extended BiTE Therapy AMG 160 has Potent Antitumor Activity in Preclinical Models of Metastatic Castration-resistant Prostate Cancer
Authors: Deegen Petra , Thomas Oliver , Nolan-Stevaux Olivier , Li Shyun , Wahl Joachim , Bogner Pamela , Aeffner Famke , Friedrich Matthias , Liao Michael Z. , Matthes Katja , Rau Doris , Rattel Benno , Raum Tobias , Kufer Peter , Coxon Angela , Bailis Julie M.
Published: April 2023

Supplementary methods, tables, and references.
Table S2 from Genomic Analysis of Circulating Tumor DNA in 3,334 Patients with Advanced Prostate Cancer Identifies Targetable BRCA Alterations and AR Resistance Mechanisms
Authors: Tukachinsky Hanna , Madison Russell W. , Chung Jon H. , Gjoerup Ole V. , Severson Eric A. , Dennis Lucas , Fendler Bernard J. , Morley Samantha , Zhong Lei , Graf Ryon P. , Ross Jeffrey S. , Alexander Brian M. , Abida Wassim , Chowdhury Simon , Ryan Charles J. , Fizazi Karim , Golsorkhi Tony , Watkins Simon P. , Simmons Andrew , Loehr Andrea , Venstrom Jeffrey M. , Oxnard Geoffrey R.
Published: April 2023

Frequency of genomic alterations in all baited genes for all three datasets.
Table S1 from Genomic Analysis of Circulating Tumor DNA in 3,334 Patients with Advanced Prostate Cancer Identifies Targetable BRCA Alterations and AR Resistance Mechanisms
Authors: Tukachinsky Hanna , Madison Russell W. , Chung Jon H. , Gjoerup Ole V. , Severson Eric A. , Dennis Lucas , Fendler Bernard J. , Morley Samantha , Zhong Lei , Graf Ryon P. , Ross Jeffrey S. , Alexander Brian M. , Abida Wassim , Chowdhury Simon , Ryan Charles J. , Fizazi Karim , Golsorkhi Tony , Watkins Simon P. , Simmons Andrew , Loehr Andrea , Venstrom Jeffrey M. , Oxnard Geoffrey R.
Published: April 2023

Regions of the genome baited in the two liquid biopsy assays, FoundationACT and FoundationOne Liquid.
Figure S9 from Genomic Analysis of Circulating Tumor DNA in 3,334 Patients with Advanced Prostate Cancer Identifies Targetable BRCA Alterations and AR Resistance Mechanisms
Authors: Tukachinsky Hanna , Madison Russell W. , Chung Jon H. , Gjoerup Ole V. , Severson Eric A. , Dennis Lucas , Fendler Bernard J. , Morley Samantha , Zhong Lei , Graf Ryon P. , Ross Jeffrey S. , Alexander Brian M. , Abida Wassim , Chowdhury Simon , Ryan Charles J. , Fizazi Karim , Golsorkhi Tony , Watkins Simon P. , Simmons Andrew , Loehr Andrea , Venstrom Jeffrey M. , Oxnard Geoffrey R.
Published: April 2023

Distribution of estimated tumor fractions in samples with or without detected copy number amplifications in AR.
Supplementary Figure S3 from The PSMA-targeting Half-life Extended BiTE Therapy AMG 160 has Potent Antitumor Activity in Preclinical Models of Metastatic Castration-resistant Prostate Cancer
Authors: Deegen Petra , Thomas Oliver , Nolan-Stevaux Olivier , Li Shyun , Wahl Joachim , Bogner Pamela , Aeffner Famke , Friedrich Matthias , Liao Michael Z. , Matthes Katja , Rau Doris , Rattel Benno , Raum Tobias , Kufer Peter , Coxon Angela , Bailis Julie M.
Published: April 2023

Figure S3. PSMA-11 does not compete with AMG 160 for PSMA binding.
Supplementary Figure S1 from The PSMA-targeting Half-life Extended BiTE Therapy AMG 160 has Potent Antitumor Activity in Preclinical Models of Metastatic Castration-resistant Prostate Cancer
Authors: Deegen Petra , Thomas Oliver , Nolan-Stevaux Olivier , Li Shyun , Wahl Joachim , Bogner Pamela , Aeffner Famke , Friedrich Matthias , Liao Michael Z. , Matthes Katja , Rau Doris , Rattel Benno , Raum Tobias , Kufer Peter , Coxon Angela , Bailis Julie M.
Published: April 2023

Figure S1. AMG 160 has high binding affinity.
Figure S5 from Genomic Analysis of Circulating Tumor DNA in 3,334 Patients with Advanced Prostate Cancer Identifies Targetable BRCA Alterations and AR Resistance Mechanisms
Authors: Tukachinsky Hanna , Madison Russell W. , Chung Jon H. , Gjoerup Ole V. , Severson Eric A. , Dennis Lucas , Fendler Bernard J. , Morley Samantha , Zhong Lei , Graf Ryon P. , Ross Jeffrey S. , Alexander Brian M. , Abida Wassim , Chowdhury Simon , Ryan Charles J. , Fizazi Karim , Golsorkhi Tony , Watkins Simon P. , Simmons Andrew , Loehr Andrea , Venstrom Jeffrey M. , Oxnard Geoffrey R.
Published: April 2023

Distribution of estimated tumor fractions in samples with or without detected copy number amplifications.
Supplementary Data from A Prospective Validation and Observer Performance Study of a Deep Learning Algorithm for Pathologic Diagnosis of Gastric Tumors in Endoscopic Biopsies
Authors: Park Jeonghyuk , Jang Bo Gun , Kim Yeong Won , Park Hyunho , Kim Baek-hui , Kim Myeung Ju , Ko Hyungsuk , Gwak Jae Moon , Lee Eun Ji , Chung Yul Ri , Kim Kyungdoc , Myung Jae Kyung , Park Jeong Hwan , Choi Dong Youl , Jung Chang Won , Park Bong-Hee , Jung Kyu-Hwan , Kim Dong-Il
Published: April 2023

Supplementary Figure S1-8, Supplementary Table S1-9
Figure S11 from Genomic Analysis of Circulating Tumor DNA in 3,334 Patients with Advanced Prostate Cancer Identifies Targetable BRCA Alterations and AR Resistance Mechanisms
Authors: Tukachinsky Hanna , Madison Russell W. , Chung Jon H. , Gjoerup Ole V. , Severson Eric A. , Dennis Lucas , Fendler Bernard J. , Morley Samantha , Zhong Lei , Graf Ryon P. , Ross Jeffrey S. , Alexander Brian M. , Abida Wassim , Chowdhury Simon , Ryan Charles J. , Fizazi Karim , Golsorkhi Tony , Watkins Simon P. , Simmons Andrew , Loehr Andrea , Venstrom Jeffrey M. , Oxnard Geoffrey R.
Published: April 2023

AR variants of unknown significance and concordance of detection between tissue/liquid.
Supplementary information from Discovery of a Novel CIP2A Variant (NOCIVA) with Clinical Relevance in Predicting TKI Resistance in Myeloid Leukemias
Authors: Mäkelä Eleonora , Pavic Karolina , Varila Taru , Salmenniemi Urpu , Löyttyniemi Eliisa , Nagelli Srikar G. , Ammunét Tea , Kähäri Veli-Matti , Clark Richard E. , Elo Laura L. , Bachanaboyina Venkata Kumari , Lucas Claire M. , Itälä-Remes Maija , Westermarck Jukka
Published: April 2023

Supplementary tables S1-S5 and supplementary figures S1-S5
Supplementary Data from Combining Nivolumab and Ipilimumab with Infliximab or Certolizumab in Patients with Advanced Melanoma: First Results of a Phase Ib Clinical Trial
Authors: Montfort Anne , Filleron Thomas , Virazels Mathieu , Dufau Carine , Milhès Jean , Pagès Cécile , Olivier Pascale , Ayyoub Maha , Mounier Muriel , Lusque Amélie , Brayer Stéphanie , Delord Jean-Pierre , Andrieu-Abadie Nathalie , Levade Thierry , Colacios Céline , Ségui Bruno , Meyer Nicolas
Published: April 2023

This file contains supplemental tables and figures and their legends.
Supplemental Table S1 from Plasma KIM-1 Is Associated with Recurrence Risk after Nephrectomy for Localized Renal Cell Carcinoma: A Trial of the ECOG-ACRIN Research Group (E2805)
Authors: Xu Wenxin , Puligandla Mäneka , Halbert Brian , Haas Naomi B. , Flaherty Keith T. , Uzzo Robert G. , Dutcher Janice P. , DiPaola Robert S. , Sabbisetti Venkata , Bhatt Rupal S.
Published: April 2023

Sensitivity analysis AFT model for DFS with imputation of KIM-1 levels below lower limit of detection (9.1 pg/mL)
Supplemental Figure S6 from Plasma KIM-1 Is Associated with Recurrence Risk after Nephrectomy for Localized Renal Cell Carcinoma: A Trial of the ECOG-ACRIN Research Group (E2805)
Authors: Xu Wenxin , Puligandla Mäneka , Halbert Brian , Haas Naomi B. , Flaherty Keith T. , Uzzo Robert G. , Dutcher Janice P. , DiPaola Robert S. , Sabbisetti Venkata , Bhatt Rupal S.
Published: April 2023

Modeled relationship between KIM-1 and overall survival
Supplemental Figure S5 from Plasma KIM-1 Is Associated with Recurrence Risk after Nephrectomy for Localized Renal Cell Carcinoma: A Trial of the ECOG-ACRIN Research Group (E2805)
Authors: Xu Wenxin , Puligandla Mäneka , Halbert Brian , Haas Naomi B. , Flaherty Keith T. , Uzzo Robert G. , Dutcher Janice P. , DiPaola Robert S. , Sabbisetti Venkata , Bhatt Rupal S.
Published: April 2023

Modelled relationship between KIM-1 and disease free survival
Supplemental Figure S4 from Plasma KIM-1 Is Associated with Recurrence Risk after Nephrectomy for Localized Renal Cell Carcinoma: A Trial of the ECOG-ACRIN Research Group (E2805)
Authors: Xu Wenxin , Puligandla Mäneka , Halbert Brian , Haas Naomi B. , Flaherty Keith T. , Uzzo Robert G. , Dutcher Janice P. , DiPaola Robert S. , Sabbisetti Venkata , Bhatt Rupal S.
Published: April 2023

Kaplan-Meier curves of disease-free survival by baseline KIM-1 stratified by nodal involvement at nephrectomy
Supplementary Data from Impact of Baseline and On-Treatment Glycemia on Everolimus-Exemestane Efficacy in Patients with Hormone Receptor–Positive Advanced Breast Cancer (EVERMET)
Authors: Vernieri Claudio , Nichetti Federico , Lalli Luca , Moscetti Luca , Giorgi Carlo Alberto , Griguolo Gaia , Marra Antonio , Randon Giovanni , Rea Carmen G. , Ligorio Francesca , Scagnoli Simone , De Angelis Claudia , Molinelli Chiara , Fabbri Agnese , Ferraro Emanuela , Trapani Dario , Milani Andrea , Agostinetto Elisa , Bernocchi Ottavia , Catania Giovanna , Vantaggiato Amelia , Palleschi Michela , Moretti Anna , Basile Debora , Cinausero Marika , Ajazi Arta , Castagnoli Lorenzo , Lo Vullo Salvatore , Gerratana Lorenzo , Puglisi Fabio , La Verde Nicla , Arpino Grazia , Rocca Andrea , Ciccarese Mariangela , Pedersini Rebecca , Fabi Alessandra , Generali Daniele , Losurdo Agnese , Montemurro Filippo , Curigliano Giuseppe , Del Mastro Lucia , Michelotti Andrea , Cortesi Enrico , Guarneri Valentina , Pruneri Giancarlo , Mariani Luigi , de Braud Filippo
Published: April 2023

Supplementary Tables and Figures
Figure S8 from A Small Hypoxia Signature Predicted pCR Response to Bevacizumab in the Neoadjuvant GeparQuinto Breast Cancer Trial
Authors: Karn Thomas , Meissner Tobias , Weber Karsten E. , Solbach Christine , Denkert Carsten , Engels Knut , Fasching Peter A. , Sinn Bruno V. , Schrader Iris , Budczies Jan , Marmé Frederik , Müller Volkmar , Holtrich Uwe , Gerber Bernd , Schem Christian , Young Brandon M. , Hanusch Claus , Stickeler Elmar , Huober Jens , van Mackelenbergh Marion , Leyland-Jones Brian , Fehm Tanja , Nekljudova Valentina , Untch Michael , Loibl Sibylle
Published: April 2023

Hypoxia signature and response by treatment arm
Table S6 from An Fc-free EGFR-specific 4-1BB-agonistic Trimerbody Displays Broad Antitumor Activity in Humanized Murine Cancer Models without Toxicity
Authors: Compte Marta , Harwood Seandean L. , Erce-Llamazares Ainhoa , Tapia-Galisteo Antonio , Romero Eduardo , Ferrer Irene , Garrido-Martin Eva M. , Enguita Ana B. , Ochoa Maria C. , Blanco Belén , Oteo Marta , Merino Nekane , Nehme-Álvarez Daniel , Hangiu Oana , Domínguez-Alonso Carmen , Zonca Manuela , Ramírez-Fernández Angel , Blanco Francisco J. , Morcillo Miguel A. , Muñoz Ines G. , Melero Ignacio , Rodriguez-Peralto José L. , Paz-Ares Luis , Sanz Laura , Alvarez-Vallina Luis
Published: April 2023

Pharmacokinetic parameters.
Figure S6 from A Small Hypoxia Signature Predicted pCR Response to Bevacizumab in the Neoadjuvant GeparQuinto Breast Cancer Trial
Authors: Karn Thomas , Meissner Tobias , Weber Karsten E. , Solbach Christine , Denkert Carsten , Engels Knut , Fasching Peter A. , Sinn Bruno V. , Schrader Iris , Budczies Jan , Marmé Frederik , Müller Volkmar , Holtrich Uwe , Gerber Bernd , Schem Christian , Young Brandon M. , Hanusch Claus , Stickeler Elmar , Huober Jens , van Mackelenbergh Marion , Leyland-Jones Brian , Fehm Tanja , Nekljudova Valentina , Untch Michael , Loibl Sibylle
Published: April 2023

Correlation of proliferation signature and histological grade
Table S4 from An Fc-free EGFR-specific 4-1BB-agonistic Trimerbody Displays Broad Antitumor Activity in Humanized Murine Cancer Models without Toxicity
Authors: Compte Marta , Harwood Seandean L. , Erce-Llamazares Ainhoa , Tapia-Galisteo Antonio , Romero Eduardo , Ferrer Irene , Garrido-Martin Eva M. , Enguita Ana B. , Ochoa Maria C. , Blanco Belén , Oteo Marta , Merino Nekane , Nehme-Álvarez Daniel , Hangiu Oana , Domínguez-Alonso Carmen , Zonca Manuela , Ramírez-Fernández Angel , Blanco Francisco J. , Morcillo Miguel A. , Muñoz Ines G. , Melero Ignacio , Rodriguez-Peralto José L. , Paz-Ares Luis , Sanz Laura , Alvarez-Vallina Luis
Published: April 2023

SAXS Data Collection and derived parameters
Figure S3 from A Small Hypoxia Signature Predicted pCR Response to Bevacizumab in the Neoadjuvant GeparQuinto Breast Cancer Trial
Authors: Karn Thomas , Meissner Tobias , Weber Karsten E. , Solbach Christine , Denkert Carsten , Engels Knut , Fasching Peter A. , Sinn Bruno V. , Schrader Iris , Budczies Jan , Marmé Frederik , Müller Volkmar , Holtrich Uwe , Gerber Bernd , Schem Christian , Young Brandon M. , Hanusch Claus , Stickeler Elmar , Huober Jens , van Mackelenbergh Marion , Leyland-Jones Brian , Fehm Tanja , Nekljudova Valentina , Untch Michael , Loibl Sibylle
Published: April 2023

Correlation of Affymetrix microarray expression data and IHC scoring of three genes in independent TNBC dataset
Figure S5 from An Fc-free EGFR-specific 4-1BB-agonistic Trimerbody Displays Broad Antitumor Activity in Humanized Murine Cancer Models without Toxicity
Authors: Compte Marta , Harwood Seandean L. , Erce-Llamazares Ainhoa , Tapia-Galisteo Antonio , Romero Eduardo , Ferrer Irene , Garrido-Martin Eva M. , Enguita Ana B. , Ochoa Maria C. , Blanco Belén , Oteo Marta , Merino Nekane , Nehme-Álvarez Daniel , Hangiu Oana , Domínguez-Alonso Carmen , Zonca Manuela , Ramírez-Fernández Angel , Blanco Francisco J. , Morcillo Miguel A. , Muñoz Ines G. , Melero Ignacio , Rodriguez-Peralto José L. , Paz-Ares Luis , Sanz Laura , Alvarez-Vallina Luis
Published: April 2023

Experimental and theoretical SAXS scattering.
Supplementary Video 2 from A Self-Assembling and Disassembling (SADA) Bispecific Antibody (BsAb) Platform for Curative Two-step Pretargeted Radioimmunotherapy
Authors: Santich Brian H. , Cheal Sarah M. , Ahmed Mahiuddin , McDevitt Michael R. , Ouerfelli Ouathek , Yang Guangbin , Veach Darren R. , Fung Edward K. , Patel Mitesh , Burnes Vargas Daniela , Malik Aiza A. , Guo Hong-Fen , Zanzonico Pat B. , Monette Sebastien , Michel Adam O. , Rudin Charles M. , Larson Steven M. , Cheung Nai K.
Published: April 2023

3-step IgG-PRIT imaging by PET/CT
Figure S4 from An Fc-free EGFR-specific 4-1BB-agonistic Trimerbody Displays Broad Antitumor Activity in Humanized Murine Cancer Models without Toxicity
Authors: Compte Marta , Harwood Seandean L. , Erce-Llamazares Ainhoa , Tapia-Galisteo Antonio , Romero Eduardo , Ferrer Irene , Garrido-Martin Eva M. , Enguita Ana B. , Ochoa Maria C. , Blanco Belén , Oteo Marta , Merino Nekane , Nehme-Álvarez Daniel , Hangiu Oana , Domínguez-Alonso Carmen , Zonca Manuela , Ramírez-Fernández Angel , Blanco Francisco J. , Morcillo Miguel A. , Muñoz Ines G. , Melero Ignacio , Rodriguez-Peralto José L. , Paz-Ares Luis , Sanz Laura , Alvarez-Vallina Luis
Published: April 2023

Analysis by SAXS of the arrangement in solution of the 4-1BBN trimerbody.
Figure S3 from An Fc-free EGFR-specific 4-1BB-agonistic Trimerbody Displays Broad Antitumor Activity in Humanized Murine Cancer Models without Toxicity
Authors: Compte Marta , Harwood Seandean L. , Erce-Llamazares Ainhoa , Tapia-Galisteo Antonio , Romero Eduardo , Ferrer Irene , Garrido-Martin Eva M. , Enguita Ana B. , Ochoa Maria C. , Blanco Belén , Oteo Marta , Merino Nekane , Nehme-Álvarez Daniel , Hangiu Oana , Domínguez-Alonso Carmen , Zonca Manuela , Ramírez-Fernández Angel , Blanco Francisco J. , Morcillo Miguel A. , Muñoz Ines G. , Melero Ignacio , Rodriguez-Peralto José L. , Paz-Ares Luis , Sanz Laura , Alvarez-Vallina Luis
Published: April 2023

Structural characterization of 4-1BBN and 4-1BBN/CEGFR trimerbodies.
Supplementary Data from A Self-Assembling and Disassembling (SADA) Bispecific Antibody (BsAb) Platform for Curative Two-step Pretargeted Radioimmunotherapy
Authors: Santich Brian H. , Cheal Sarah M. , Ahmed Mahiuddin , McDevitt Michael R. , Ouerfelli Ouathek , Yang Guangbin , Veach Darren R. , Fung Edward K. , Patel Mitesh , Burnes Vargas Daniela , Malik Aiza A. , Guo Hong-Fen , Zanzonico Pat B. , Monette Sebastien , Michel Adam O. , Rudin Charles M. , Larson Steven M. , Cheung Nai K.
Published: April 2023

Supplementary Data (Tables and Figure legends)
Figure S4 from A Self-Assembling and Disassembling (SADA) Bispecific Antibody (BsAb) Platform for Curative Two-step Pretargeted Radioimmunotherapy
Authors: Santich Brian H. , Cheal Sarah M. , Ahmed Mahiuddin , McDevitt Michael R. , Ouerfelli Ouathek , Yang Guangbin , Veach Darren R. , Fung Edward K. , Patel Mitesh , Burnes Vargas Daniela , Malik Aiza A. , Guo Hong-Fen , Zanzonico Pat B. , Monette Sebastien , Michel Adam O. , Rudin Charles M. , Larson Steven M. , Cheung Nai K.
Published: April 2023

summary of toxicity data from 225Ac SADA-PRIT experiment against a neuroblastoma PDX
Supplementary Tables 1-4 from Effects of HER Family–targeting Tyrosine Kinase Inhibitors on Antibody-dependent Cell-mediated Cytotoxicity in HER2-expressing Breast Cancer
Authors: Collins Denis M. , Madden Stephen F. , Gaynor Nicola , AlSultan Dalal , Le Gal Marion , Eustace Alex J. , Gately Kathy A. , Hughes Clare , Davies Anthony M. , Mahgoub Thamir , Ballot Jo , Toomey Sinead , O'Connor Darran P. , Gallagher William M. , Holmes Frankie A. , Espina Virginia , Liotta Lance , Hennessy Bryan T. , O'Byrne Kenneth J. , Hasmann Max , Bossenmaier Birgit , O'Donovan Norma , Crown John
Published: April 2023

Flow cytometry MFI and % positive cells data for fluorescently labelled trastuzumab and pertuzumab in SKBR3, HCC1954, T47D and MCF-7 treated with TKIs
Supplementary Figure 3 from Effects of HER Family–targeting Tyrosine Kinase Inhibitors on Antibody-dependent Cell-mediated Cytotoxicity in HER2-expressing Breast Cancer
Authors: Collins Denis M. , Madden Stephen F. , Gaynor Nicola , AlSultan Dalal , Le Gal Marion , Eustace Alex J. , Gately Kathy A. , Hughes Clare , Davies Anthony M. , Mahgoub Thamir , Ballot Jo , Toomey Sinead , O'Connor Darran P. , Gallagher William M. , Holmes Frankie A. , Espina Virginia , Liotta Lance , Hennessy Bryan T. , O'Byrne Kenneth J. , Hasmann Max , Bossenmaier Birgit , O'Donovan Norma , Crown John
Published: April 2023

Densitometry for Figure 1D
Supplementary Figure S2 from A Phase II Trial of 5-Day Neoadjuvant Radiotherapy for Patients with High-Risk Primary Soft Tissue Sarcoma
Authors: Kalbasi Anusha , Kamrava Mitchell , Chu Fang-I , Telesca Donatello , Van Dams Ritchell , Yang Yingli , Ruan Dan , Nelson Scott D. , Dry Sarah M. , Hernandez Jackie , Chmielowski Bartosz , Singh Arun S. , Bukata Susan V. , Bernthal Nicholas M. , Steinberg Michael L. , Weidhaas Joanne B. , Eilber Fritz C.
Published: April 2023

Figure S2 - Patient and physician reported functional outcomes after 5-day preoperative RT and surgery.
Supplementary Data Figure 1 from Effects of HER Family–targeting Tyrosine Kinase Inhibitors on Antibody-dependent Cell-mediated Cytotoxicity in HER2-expressing Breast Cancer
Authors: Collins Denis M. , Madden Stephen F. , Gaynor Nicola , AlSultan Dalal , Le Gal Marion , Eustace Alex J. , Gately Kathy A. , Hughes Clare , Davies Anthony M. , Mahgoub Thamir , Ballot Jo , Toomey Sinead , O'Connor Darran P. , Gallagher William M. , Holmes Frankie A. , Espina Virginia , Liotta Lance , Hennessy Bryan T. , O'Byrne Kenneth J. , Hasmann Max , Bossenmaier Birgit , O'Donovan Norma , Crown John
Published: April 2023

Rituximab ADCC negative control
Supplementary Table 1 from Hematopoietic Stem Cell Transplantation Positively Affects the Natural History of Cancer in Nijmegen Breakage Syndrome
Authors: Wolska-Kusnierz Beata , Pastorczak Agata , Fendler Wojciech , Wakulinska Anna , Dembowska-Baginska Bozena , Heropolitanska-Pliszka Edyta , Piątosa Barbara , Pietrucha Barbara , Kałwak Krzysztof , Ussowicz Marek , Pieczonka Anna , Drabko Katarzyna , Lejman Monika , Koltan Sylwia , Gozdzik Jolanta , Styczynski Jan , Fedorova Alina , Miakova Natalia , Deripapa Elena , Kostyuchenko Larysa , Krenova Zdenka , Hlavackova Eva , Gennery Andrew R. , Sykora Karl-Walter , Ghosh Sujal , Albert Michael H. , Balashov Dmitry , Eapen Mary , Svec Peter , Seidel Markus G. , Kilic Sara S. , Tomaszewska Agnieszka , Wiesik-Szewczyk Ewa , Kreins Alexandra , Greil Johann , Buechner Jochen , Lund Bendik , Gregorek Hanna , Chrzanowska Krystyna , Mlynarski Wojciech
Published: April 2023

Supplementary Table 1
Table S1 from Investigation of Antigen-Specific T-Cell Receptor Clusters in Human Cancers
Authors: Zhang Hongyi , Liu Longchao , Zhang Jian , Chen Jiahui , Ye Jianfeng , Shukla Sachet , Qiao Jian , Zhan Xiaowei , Chen Hao , Wu Catherine J. , Fu Yang-Xin , Li Bo
Published: April 2023

Gene-Ontology enrichment analysis.
Supplementary Data legend from Hematopoietic Stem Cell Transplantation Positively Affects the Natural History of Cancer in Nijmegen Breakage Syndrome
Authors: Wolska-Kusnierz Beata , Pastorczak Agata , Fendler Wojciech , Wakulinska Anna , Dembowska-Baginska Bozena , Heropolitanska-Pliszka Edyta , Piątosa Barbara , Pietrucha Barbara , Kałwak Krzysztof , Ussowicz Marek , Pieczonka Anna , Drabko Katarzyna , Lejman Monika , Koltan Sylwia , Gozdzik Jolanta , Styczynski Jan , Fedorova Alina , Miakova Natalia , Deripapa Elena , Kostyuchenko Larysa , Krenova Zdenka , Hlavackova Eva , Gennery Andrew R. , Sykora Karl-Walter , Ghosh Sujal , Albert Michael H. , Balashov Dmitry , Eapen Mary , Svec Peter , Seidel Markus G. , Kilic Sara S. , Tomaszewska Agnieszka , Wiesik-Szewczyk Ewa , Kreins Alexandra , Greil Johann , Buechner Jochen , Lund Bendik , Gregorek Hanna , Chrzanowska Krystyna , Mlynarski Wojciech
Published: April 2023

Supplementary Data legend
Supplementary Table 1 and Supplementary figure legends from Early 3+3 Trial Dose-Escalation Phase I Clinical Trial Design and Suitability for Immune Checkpoint Inhibitors
Authors: Rahma Osama E. , Reuss Joshua E. , Giobbie-Hurder Anita , Shoja E Razavi Ghazaleh , Abu-Shawer Osama , Mehra Pooja , Gupta Seema , Simon Richard , Khleif Samir N.
Published: April 2023

Supplementary table 1 and Supplementary figure legends.
Supplementary Data 2 from Investigation of Antigen-Specific T-Cell Receptor Clusters in Human Cancers
Authors: Zhang Hongyi , Liu Longchao , Zhang Jian , Chen Jiahui , Ye Jianfeng , Shukla Sachet , Qiao Jian , Zhan Xiaowei , Chen Hao , Wu Catherine J. , Fu Yang-Xin , Li Bo
Published: April 2023

TCR clusters obtained from the most abundant clonotypes of 666 HCMV cohort.
Supplementary Figures from Comprehensive Molecular Characterization and Response to Therapy in Fumarate Hydratase–Deficient Renal Cell Carcinoma
Authors: Gleeson Jack P. , Nikolovski Ines , Dinatale Renzo , Zucker Mark , Knezevic Andrea , Patil Sujata , Ged Yasser , Kotecha Ritesh R. , Shapnik Natalie , Murray Samuel , Russo Paul , Coleman Jonathan , Lee Chung Han , Stadler Zsofia K. , Hakimi A. Ari , Feldman Darren R. , Motzer Robert J. , Reznik Ed , Voss Martin H. , Chen Ying-Bei , Carlo Maria I.
Published: April 2023

Supplementary Figures S1 and S2
Tables S1-S13 from Integrative Genomic Analysis of Gemcitabine Resistance in Pancreatic Cancer by Patient-derived Xenograft Models
Authors: Yang Gang , Guan Wenfang , Cao Zhe , Guo Wenbo , Xiong Guangbing , Zhao Fangyu , Feng Mengyu , Qiu Jiangdong , Liu Yueze , Zhang Michael Q. , You Lei , Zhang Taiping , Zhao Yupei , Gu Jin
Published: April 2023

Tables S1-S13
Figure S5 from Integrative Genomic Analysis of Gemcitabine Resistance in Pancreatic Cancer by Patient-derived Xenograft Models
Authors: Yang Gang , Guan Wenfang , Cao Zhe , Guo Wenbo , Xiong Guangbing , Zhao Fangyu , Feng Mengyu , Qiu Jiangdong , Liu Yueze , Zhang Michael Q. , You Lei , Zhang Taiping , Zhao Yupei , Gu Jin
Published: April 2023

Protein-protein interaction (PPI) network of DEmRNAs of PDXs before and after gemcitabine
Supplementary Table S1 from Single-cell Spatial Proteomic Revelations on the Multiparametric MRI Heterogeneity of Clinically Significant Prostate Cancer
Authors: Pachynski Russell K. , Kim Eric H. , Miheecheva Natalia , Kotlov Nikita , Ramachandran Akshaya , Postovalova Ekaterina , Galkin Ilia , Svekolkin Viktor , Lyu Yang , Zou Qiong , Cao Dengfeng , Gaut Joseph , Ippolito Joseph E. , Bagaev Alexander , Bruttan Maria , Gancharova Olga , Nomie Krystle , Tsiper Maria , Andriole Gerald L. , Ataullakhanov Ravshan , Hsieh James J.
Published: April 2023

Supplementary Table S1. Clinicopathologic characteristics of each mpMRI-invisible and -visible PCa tumor.
Figure S3 from Integrative Genomic Analysis of Gemcitabine Resistance in Pancreatic Cancer by Patient-derived Xenograft Models
Authors: Yang Gang , Guan Wenfang , Cao Zhe , Guo Wenbo , Xiong Guangbing , Zhao Fangyu , Feng Mengyu , Qiu Jiangdong , Liu Yueze , Zhang Michael Q. , You Lei , Zhang Taiping , Zhao Yupei , Gu Jin
Published: April 2023

The analysis of correlation between drug responses and the highly mutated genes
Figure S1 from Integrative Genomic Analysis of Gemcitabine Resistance in Pancreatic Cancer by Patient-derived Xenograft Models
Authors: Yang Gang , Guan Wenfang , Cao Zhe , Guo Wenbo , Xiong Guangbing , Zhao Fangyu , Feng Mengyu , Qiu Jiangdong , Liu Yueze , Zhang Michael Q. , You Lei , Zhang Taiping , Zhao Yupei , Gu Jin
Published: April 2023

Concordance and percent of the primary tumor mutations found in the PDX samples
Supplementary Figure S1 from Single-cell Spatial Proteomic Revelations on the Multiparametric MRI Heterogeneity of Clinically Significant Prostate Cancer
Authors: Pachynski Russell K. , Kim Eric H. , Miheecheva Natalia , Kotlov Nikita , Ramachandran Akshaya , Postovalova Ekaterina , Galkin Ilia , Svekolkin Viktor , Lyu Yang , Zou Qiong , Cao Dengfeng , Gaut Joseph , Ippolito Joseph E. , Bagaev Alexander , Bruttan Maria , Gancharova Olga , Nomie Krystle , Tsiper Maria , Andriole Gerald L. , Ataullakhanov Ravshan , Hsieh James J.
Published: April 2023

Supplementary Figure S1. AI-based analysis uncovers differences in stromal distribution using software-generated masks between mpMRI-invisible and -visible PCa. Upper, Middle, quantification of stromal distribution in non-malignant and malignant compartments. Bottom, the kernel density estimations (stromal distribution) between malignant and non-malignant compartments (Wasserstein distance) were calculated for each mpMRI-invisible and -visible PCa tumor.
Supplementary Data from Delving into Early-onset Pancreatic Ductal Adenocarcinoma: How Does Age Fit In?
Authors: Tsang Erica S. , Topham James T. , Karasinska Joanna M. , Lee Michael K.C. , Williamson Laura M. , Mendis Shehara , Denroche Robert E. , Jang Gun Ho , Kalloger Steve E. , Moore Richard A. , Mungall Andrew J. , Bathe Oliver F. , Tang Patricia A. , Notta Faiyaz , Wilson Julie M. , Laskin Janessa , O'Kane Grainne M. , Knox Jennifer J. , Goodwin Rachel A. , Loree Jonathan M. , Jones Steven J.M. , Marra Marco A. , Gallinger Steven , Schaeffer David F. , Renouf Daniel J.
Published: April 2023

Supplemental Tables and Figures
Supplementary Material 2 from Clinical Impact of Presurgery Circulating Tumor DNA after Total Neoadjuvant Treatment in Locally Advanced Rectal Cancer: A Biomarker Study from the GEMCAD 1402 Trial
Authors: Vidal Joana , Casadevall David , Bellosillo Beatriz , Pericay Carles , Garcia-Carbonero Rocio , Losa Ferran , Layos Laia , Alonso Vicente , Capdevila Jaume , Gallego Javier , Vera Ruth , Salud Antonieta , Martin-Richard Marta , Nogué Miguel , Cillán Elena , Maurel Joan , Faull Iris , Raymond Victoria , Fernández-Martos Carlos , Montagut Clara
Published: April 2023

Calculation of the neoadjuvant rectal (NAR) score.
Supplementary Material 1 from Clinical Impact of Presurgery Circulating Tumor DNA after Total Neoadjuvant Treatment in Locally Advanced Rectal Cancer: A Biomarker Study from the GEMCAD 1402 Trial
Authors: Vidal Joana , Casadevall David , Bellosillo Beatriz , Pericay Carles , Garcia-Carbonero Rocio , Losa Ferran , Layos Laia , Alonso Vicente , Capdevila Jaume , Gallego Javier , Vera Ruth , Salud Antonieta , Martin-Richard Marta , Nogué Miguel , Cillán Elena , Maurel Joan , Faull Iris , Raymond Victoria , Fernández-Martos Carlos , Montagut Clara
Published: April 2023

Study protocol
Supplementary Data from Neoadjuvant Chemoradiotherapy Combined with Atezolizumab for Resectable Esophageal Adenocarcinoma: A Single-arm Phase II Feasibility Trial (PERFECT)
Authors: van den Ende Tom , de Clercq Nicolien C. , van Berge Henegouwen Mark I. , Gisbertz Suzanne S. , Geijsen E.D. , Verhoeven R.H.A. , Meijer Sybren L. , Schokker Sandor , Dings M.P.G. , Bergman Jacques J.G.H.M. , Haj Mohammad Nadia , Ruurda Jelle P. , van Hillegersberg Richard , Mook Stella , Nieuwdorp Max , de Gruijl Tanja D. , Soeratram Tanya T.D. , Ylstra Bauke , van Grieken Nicole C.T. , Bijlsma Maarten F. , Hulshof Maarten C.C.M. , van Laarhoven H.W.M.
Published: April 2023

Figure S4. Cytotoxic lymphocytes between baseline and on-treatment.
Supplementary Tables 1-3 from B7-H3: An Attractive Target for Antibody-based Immunotherapy
Authors: Kontos Filippos , Michelakos Theodoros , Kurokawa Tomohiro , Sadagopan Ananthan , Schwab Joseph H. , Ferrone Cristina R. , Ferrone Soldano
Published: April 2023

Supplementary Tables 1-3
Supplementary information from A Clinically Applicable 24-Protein Model for Classifying Risk Subgroups in Pancreatic Ductal Adenocarcinomas using Multiple Reaction Monitoring-Mass Spectrometry
Authors: Son Minsoo , Kim Hongbeom , Han Dohyun , Kim Yoseop , Huh Iksoo , Han Youngmin , Hong Seung-Mo , Kwon Wooil , Kim Haeryoung , Jang Jin-Young , Kim Youngsoo
Published: April 2023

Supplementary materials
Supplemental figure 1 from High-dose per Fraction Radiotherapy Induces Both Antitumor Immunity and Immunosuppressive Responses in Prostate Tumors
Authors: Lin Lin , Kane Nathanael , Kobayashi Naoko , Kono Evelyn A. , Yamashiro Joyce M. , Nickols Nicholas G. , Reiter Robert E.
Published: April 2023

Supplemental 1. RT 2x 8Gy inhibited tumor growth in MycCap animals
Figure S5 from A Somatostatin Receptor Subtype-3 (SST3) Peptide Agonist Shows Antitumor Effects in Experimental Models of Nonfunctioning Pituitary Tumors
Authors: Vázquez-Borrego Mari C. , Gupta Vandana , Ibáñez-Costa Alejandro , Gahete Manuel D. , Venegas-Moreno Eva , Toledano-Delgado Álvaro , Cano David A. , Blanco-Acevedo Cristóbal , Ortega-Salas Rosa , Japón Miguel A. , Barrera-Martín Ana , Vasiljevic Alexandre , Hill Jason , Zhang Shengwen , Halem Heather , Solivera Juan , Raverot Gérald , Gálvez María A. , Soto-Moreno Alfonso , Paez-Pereda Marcelo , Culler Michael D. , Castaño Justo P. , Luque Raúl M.
Published: April 2023

ROC-curve analyses to determine the accuracy of SSTs expression levels to discriminate between responsive and unresponsive NFPTs.
Supplementary Data from Role of Tumor-Infiltrating B Cells in Clinical Outcome of Patients with Melanoma Treated With Dabrafenib Plus Trametinib
Authors: Brase Jan C. , Walter Robert F.H. , Savchenko Alexander , Gusenleitner Daniel , Garrett James , Schimming Tobias , Varaljai Renata , Castelletti Deborah , Kim Ju , Dakappagari Naveen , Schultz Ken , Robert Caroline , Long Georgina V. , Nathan Paul D. , Ribas Antoni , Flaherty Keith T. , Karaszewska Boguslawa , Schachter Jacob , Sucker Antje , Schmid Kurt W. , Zimmer Lisa , Livingstone Elisabeth , Gasal Eduard , Schadendorf Dirk , Roesch Alexander
Published: April 2023

Supplementary Data from Role of Tumor-Infiltrating B Cells in Clinical Outcome of Patients with Melanoma Treated With Dabrafenib Plus Trametinib
Figure S8 from Deep Learning for Fully Automated Prediction of Overall Survival in Patients with Oropharyngeal Cancer Using FDG-PET Imaging
Authors: Cheng Nai-Ming , Yao Jiawen , Cai Jinzheng , Ye Xianghua , Zhao Shilin , Zhao Kui , Zhou Wenlan , Nogues Isabella , Huo Yuankai , Liao Chun-Ta , Wang Hung-Ming , Lin Chien-Yu , Lee Li-Yu , Xiao Jing , Lu Le , Zhang Ling , Yen Tzu-Chen
Published: April 2023

KM analyses by HPV- and cTNM, DeepPET-OPSCC risk category, entire cohort