bluuebunny/crossref_metadata_2025 huggingface dataset:
A matter of new life and cell death: programmed cell death in the mammalian ovary
Authors: Chesnokov Mikhail S. , Mamedova Aygun R. , Zhivotovsky Boris , Kopeina Gelina S.
Published: March 2024

Background

The mammalian ovary is a unique organ that displays a distinctive feature of cyclic changes throughout the entire reproductive period. The estrous/menstrual cycles are associated with drastic functional and morphological rearrangements of ovarian tissue, including follicular development and degeneration, and the formation and subsequent atrophy of the corpus luteum. The flawless execution of these reiterative processes is impossible without the involvement of programmed cell death (PCD).

Main text

PCD is crucial for efficient and careful clearance of excessive, depleted, or obsolete ovarian structures for ovarian cycling. Moreover, PCD facilitates selection of high-quality oocytes and formation of the ovarian reserve during embryonic and juvenile development. Disruption of PCD regulation can heavily impact the ovarian functions and is associated with various pathologies, from a moderate decrease in fertility to severe hormonal disturbance, complete loss of reproductive function, and tumorigenesis. This comprehensive review aims to provide updated information on the role of PCD in various processes occurring in normal and pathologic ovaries. Three major events of PCD in the ovary—progenitor germ cell depletion, follicular atresia, and corpus luteum degradation—are described, alongside the detailed information on molecular regulation of these processes, highlighting the contribution of apoptosis, autophagy, necroptosis, and ferroptosis. Ultimately, the current knowledge of PCD aberrations associated with pathologies, such as polycystic ovarian syndrome, premature ovarian insufficiency, and tumors of ovarian origin, is outlined.

Conclusion

PCD is an essential element in ovarian development, functions and pathologies. A thorough understanding of molecular mechanisms regulating PCD events is required for future advances in the diagnosis and management of various disorders of the ovary and the female reproductive system in general.
Evaluation of computed tomography in the diagnosis of ultrasound-proven diaphragm dysfunction
Authors: Lallement Pauline , Boussuges Alain , Habert Paul , Bermudez Julien , Reynaud-Gaubert Martine , Delliaux Stéphane , Bregeon Fabienne , Coiffard Benjamin
Published: March 2024

Introduction

Computed tomography (CT) is routinely employed on the evaluation of dyspnea, yet limited data exist on its assessment of diaphragmatic muscle. This study aimed to determine the capability of CT in identifying structural changes in the diaphragm among patients with ultrasound-confirmed diaphragmatic dysfunction.

Methods

Diaphragmatic ultrasounds conducted between 2018 and 2021 at our center in Marseille, France, were retrospectively collected. Diaphragmatic pillars were measured on CT scans at the L1 level and the celiac artery. Additionally, the difference in height between the two diaphragmatic domes in both diaphragmatic dysfunction cases and controls was measured and compared.

Results

A total of 65 patients were included, comprising 24 with diaphragmatic paralysis, 13 with diaphragmatic weakness, and 28 controls. In the case group (paralysis and weakness) with left dysfunctions (n = 24), the CT thickness of the pillars at the level of L1 and the celiac artery was significantly thinner compared with controls (2.0 mm vs. 7.4 mm and 1.8 mm vs. 3.1 mm, p < 0.001 respectively). Significantly different values were observed for paralysis (but not weakness) in the right dysfunction subgroup (n = 15) (2.6 mm vs. 7.4 mm and 2.2 mm vs. 3.8 mm, p < 0.001 respectively, for paralysis vs. controls). Regardless of the side of dysfunction, a significant difference in diaphragmatic height was observed between cases and controls (7.70 cm vs. 1.16 cm and 5.51 cm vs. 1.16 cm, p < 0.001 for right and left dysfunctions, respectively). Threshold values determined through ROC curve analyses for height differences between the two diaphragmatic domes, indicative of paralysis or weakness in the right dysfunctions, were 4.44 cm and 3.51 cm, respectively. Similarly for left dysfunctions, the thresholds were 2.70 cm and 2.48 cm, respectively, demonstrating good performance (aera under the curve of 1.00, 1.00, 0.98, and 0.79, respectively).

Conclusion

In cases of left diaphragmatic dysfunction, as well as in paralysis associated with right diaphragmatic dysfunction, CT revealed thinner pillars. Additionally, a notable increase in the difference in diaphragmatic height demonstrated a strong potential to identify diaphragmatic dysfunction, with specific threshold values.
SGLT2 inhibition, high-density lipoprotein, and kidney function: a mendelian randomization study
Authors: Wang Zhijuan , Wei Jie , Zhao Wenman , Shi Rui , Zhu Yuyu , Li Xunliang , Wang Deguang
Published: March 2024

Background

Sodium-glucose cotransporter 2 (SGLT2) inhibition is recognized for its evident renoprotective benefits in diabetic renal disease. Recent data suggest that SGLT2 inhibition also slows down kidney disease progression and reduces the risk of acute kidney injury, regardless of whether the patient has diabetes or not, but the mechanism behind these observed effects remains elusive. The objective of this study is to utilize a mendelian randomization (MR) methodology to comprehensively examine the influence of metabolites in circulation regarding the impact of SGLT2 inhibition on kidney function.

Methods

We used a MR study to obtain associations between genetic proxies for SGLT2 inhibition and kidney function. We retrieved the most recent and comprehensive summary statistics from genome-wide association studies (GWAS) that have been previously published and involved kidney function parameters such as estimated glomerular filtration rate (eGFR), urine albumin-to-creatinine ratio (UACR), and albuminuria. Additionally, we included blood metabolite data from 249 biomarkers in the UK Biobank for a more comprehensive analysis. We performed MR analyses to explore the causal relationships between SGLT2 inhibition and kidney function and two-step MR to discover potential mediating metabolites.

Results

The study found that a decrease in HbA1c levels by one standard deviation, which is genetically expected to result in SGLT2 inhibition, was linked to a decreased likelihood of developing type 2 diabetes mellitus (T2DM) (odds ratio [OR] = 0.55 [95% CI 0.35, 0.85],P = 0.007). Meanwhile, SGLT2 inhibition also protects eGFR (β = 0.05 [95% CI 0.03, 0.08],P = 2.45 × 10− 5) and decreased UACR (-0.18 [95% CI -0.33, -0.02],P = 0.025) and albuminuria (-1.07 [95% CI -1.58, -0.57],P = 3.60 × 10− 5). Furthermore, the study found that of the 249 metabolites present in the blood, only one metabolite, specifically the concentration of small high-density lipoprotein (HDL) particles, was significantly correlated with both SGLT2 inhibition and kidney function. This metabolite was found to play a crucial role in mediating the improvement of renal function through the use of SGLT2 inhibition (β = 0.01 [95% CI 0.005, 0.018],P = 0.001), with a mediated proportion of 13.33% (95% CI [5.71%, 26.67%],P = 0.020).

Conclusions

The findings of this investigation provide evidence in favor of a genetically anticipated biological linkage between the inhibition of SGLT2, the presence of circulating metabolites, and renal function. The findings demonstrate that the protective effect of SGLT2 inhibition on renal function is mostly mediated by HDL particle concentrations in circulating metabolites. These results offer significant theoretical support for both the preservation of renal function and a better comprehension of the mechanisms underlying SGLT2 inhibition.
Association between dietary magnesium intake and gallstones: the mediating role of atherogenic index of plasma
Authors: Du Wenyi , Yan Chen , Wang Yinkang , Song Chen , Li Yunfan , Tian Zhiqiang , Liu Yuan , Shen Wei
Published: March 2024

Background

Dyslipidemia and abnormalities in cholesterol metabolism are commonly observed in individuals with gallstone disease. Previous research has demonstrated that dietary magnesium can influence lipid metabolism. The atherogenic index of plasma (AIP) has emerged as a novel lipid marker. This study aimed to examine the possible correlation between dietary magnesium intake and gallstones and the potential mediating role of AIP in US adults.

Methods

A total of 4,841 adults were included in this study from the National Health and Nutrition Examination Survey (NHANES) conducted from 2017 to 2020. A variety of statistical techniques such as logistic regression, subgroup analysis, smoothed curve fitting, and causal mediation analysis were utilized to analyze the information collected from the participants.

Results

In the fully adjusted model, a statistically noteworthy inverse relationship was observed between dietary magnesium intake and the presence of gallstones, as indicated by an odds ratio (OR) of 0.58 and a 95% confidence interval (CI) of (0.42, 0.81). Causal intermediary analysis revealed that the association between magnesium intake and gallstones was partially mediated by AIP, with a mediation ratio of 3.2%.

Conclusion

According to this study, dietary magnesium intake had a significant linear negative association with the prevalence of gallstones, in which AIP played a mediating role. This discovery offers novel perspectives on the prevention and management of gallstones.
Renal damage and old age: risk factors for thrombosis in patients with ANCA-associated vasculitis
Authors: Chen Xin , Zhang Shuo , You Ruilian , Ma Yixin , Xia Peng , Shi Xiaoxiao , Wu Haiting , Zheng Ke , Qin Yan , Tian Xinping , Chen Limeng
Published: March 2024

Introduction

Thrombosis in ANCA-associated vasculitis (AAV) was prevalent and has been neglected in Chinese patients. This study tried to describe the clinical characteristics, identify the risk factors, and investigate the causal relationship between AAV and venous thromboembolism (VTE) by two-sample Mendelian randomization (MR) analysis.

Methods

In this retrospective, observational study, we included all hospitalized AAV patients from Jan 2013 to Apr 2022 in Peking Union Medical College Hospital. We collected their clinical data for multivariate regression analysis to determine the risk factors for thrombosis. The nomogram was constructed by applying these risk factors to predict thrombosis in AAV patients. As for MR analysis, we selected single nucleotide polymorphisms (SNPs) related to AAV from published genome-wide association studies and extracted the outcome data containing deep vein thrombosis (DVT) and pulmonary embolism (PE) from the UK biobank.

Results

1203 primary AAV patients were enrolled, and thrombosis occurred in 11.3%. Multivariate regression suggested that older than 65 years, EGPA, neurological involvement, lung involvement, significantly elevated serum creatinine (> 500µmol/L), and elevated D-dimer were associated with thrombosis in AAV patients. The model demonstrated satisfied discrimination with an AUC of 0.769 (95% CI, 0.726–0.812). MR analysis showed that EGPA could increase the risk of developing DVT and PE (OR = 1.0038, 95%CI = 1.0035–1.0041, P = 0.009).

Conclusion

Thrombosis was not rare in Chinese patients with AAV. Renal damage and old age emerged as critical risk factors for thrombosis. EGPA might have a potential causal relationship with DVT and PE.
Mother adversity and co-residence time impact mother–child similarity in genome-wide and gene-specific methylation profiles
Authors: Labaut Lucía , Lage-Castellanos Agustín , Rodrigo María José , Herrero-Roldán Silvia , Mitchell Colter , Fisher Jonah , León Inmaculada
Published: March 2024

Background

The effects of adverse life events on physical and psychological health, with DNA methylation (DNAm) as a critical underlying mechanism, have been extensively studied. However, the epigenetic resemblance between mother and child in the context of neglectful caregiving, and whether it may be shaped by the emotional impact of maternal stressful events and the duration of co-residence (indexed by child age), remains unknown. The present study examined mother–child similarity in methylation profiles, considering the potential effect of mother adversity, mother empathy, neglect-control group, child age (an index of years of mother–child co-residence), and mother age. Using Illumina Epic arrays, we quantified DNAm in 115 mother–child saliva samples. We obtained a methylation similarity index by computing correlation coefficients between methylation profiles within dyads, for the entire epigenome, and five specific genes related to stress and empathy: NR3C1, FKPB5, OXTR, SCL6A4, and BDNF.

Results

The methylation profiles of the mother–child familial pairs significantly correlated as compared to mother–child random pairs for the entire epigenome and NR3C1, FKBP5, OXTR and BDNF genes. Next, multiple linear regression models observed associations of mother adversity, child age, and neglect-control group on mother–child methylation similarity, only significant in mother–child familial pairs, after correcting for multiple comparisons. Higher mother adversity was associated with lower mother–child methylation similarity for the epigenome-wide analysis, for the BDNF gene, and in the neglect-control group for the OXTR gene. In turn, being an older child (longer co-residence) was associated with higher mother–child methylation similarity.

Conclusions

Mother adversity and co-residence time are modulating factors in the intergenerational methylation process that offer a window into development-dependent adaptations that can be affected by both hereditary and environmental factors, significantly observed only in biological dyads. A twofold implication for child well-being emerges, one is positive in that children of mothers exposed to life adversity or neglect did not necessarily inherit their methylation patterns. The other is concerning due to the influence of time spent living together, which affects similarity with the mother and potentially increases the risk of inheriting an epigenetic profile associated with future dysfunctional parenting patterns. This underscores the importance of the 'the earlier, the better' recommendation by the Child Protection System, which is not always followed.
Abnormal levels of expression of microRNAs in peripheral blood of patients with traumatic brain injury are induced by microglial activation and correlated with severity of injury
Authors: Feng Shuo , Wu Zhangying , Zheng Xianping , Shao Zhiwei , Lin Qiang , Sun Shoutian
Published: March 2024

Background

Microglia play a crucial role in regulating the progression of traumatic brain injury (TBI). In specific, microglia can self-activate and secrete various substances that exacerbate or alleviate the neuroimmune response to TBI. In addition, microRNAs (miRNAs) are involved in the functional regulation of microglia. However, molecular markers that reflect the dynamics of TBI have not yet been found in peripheral tissues.

Methods

Paired samples of peripheral blood were collected from patients with TBI before and after treatment. Next-generation sequencing and bioinformatics analysis were used to identify the main pathways and biological functions of TBI-related miRNAs in the samples. Moreover, lipopolysaccharide-treated human microglia were used to construct a cellular immune-activation model. This was combined with analysis of peripheral blood samples to screen for highly expressed miRNAs derived from activated microglia after TBI treatment. Quantitative reverse-transcriptase polymerase chain reaction was used to determine the expression levels of these miRNAs, allowing their relationship with the severity of TBI to be examined. Receiver operating characteristic (ROC) curves were constructed to analyse the clinical utility of these miRNAs for determining the extent of TBI.

Results

Sequencing results showed that 37 miRNAs were differentially expressed in peripheral blood samples from patients with TBI before and after treatment, with 17 miRNAs being upregulated and 20 miRNAs being downregulated after treatment. The expression profiles of these miRNAs were verified in microglial inflammation models and in the abovementioned peripheral blood samples. The results showed that hsa-miR-122-5p and hsa-miR-193b-3p were highly expressed in the peripheral blood of patients with TBI after treatment and that the expression levels of these miRNAs were correlated with the patients’ scores on the Glasgow Coma Scale. ROC curve analysis revealed that abnormally high levels of expression of hsa-miR-122-5p and hsa-miR-193b-3p in peripheral blood have some clinical utility for distinguishing different extents of TBI and thus could serve as biomarkers of TBI.

Conclusion

Abnormally high levels of expression of hsa-miR-122-5p and hsa-miR-193b-3p in the peripheral blood of patients with TBI were due to the activation of microglia and correlated with the severity of TBI. This discovery may help to increase understanding of the molecular pathology of TBI and guide the development of new strategies for TBI therapy based on microglial function.
Hidden in plain sight: revisiting the synthesis, characterisation, degradation and the intricate relationship between Scheele’s green and Emerald green
Authors: Pantoja Munoz Leonardo
Published: March 2024

Carl Wilhelm Scheele's notorious toxic pigment, commonly referred to as “Scheele's green” often resulted in a mixture of products with unknown chemical composition. Positive identification of the pigment has been limited to Raman spectroscopy and indirect analysis using FTIR and XRD methods. Despite these techniques, reported occurrences of the pigment in heritage samples are scarce, suggesting that Scheele’s green is rarely reported due to challenges in its characterisation rather than infrequent use. Regarding the degradation of Cu-As green pigments, common assumptions suggest dissociation in acidic pH conditions, generating mobile arsenic and copper ions, followed by oxidation to As(V), which can co-precipitate with Fe, Al, and Ca ions. This study reproduces the fabrication of Scheele's green using historical recipes, focusing on maintaining the pH of the arsenite solution at 9.3. The research explores its relationship with Emerald green, the challenges associated with their identification, and addresses common misconceptions about the degradation of such pigments. Maintaining the pH at 9.3 proved influential in obtaining a crystalline product with an intense Raman signal, aligning with the widely accepted spectra of Scheele’s green. However, Raman spectra from amorphous Cu-As samples consistently exhibited broad bands at 288 and 845 cm−1, prompting a proposed modification for a dual representation of the pigment: the “common” form with broad bands and the “uncommon” or crystalline form as reported in the literature. Demonstrating that the crystalline form shares nearly identical Raman and FTIR spectra implies an identical chemical composition to Trippkeite. Evidence presented highlights that Cu-As based pigments contain free copper, arsenite and arsenate ions prone to migration, challenging commonly described degradation pathways. The hypothesis presented here, that Emerald green synthesis may inadvertently yield small amounts of Scheele’s green urges caution in pigment identification using Raman spectroscopy. Additionally, the study reveals, for the first time, the occurrence of Scheele’s green in a book, with particles exhibiting a spherulite form, challenging identification of Emerald green solely based on morphology.
Emergent place-identity: place activation through the architectural restoration of a small Hakka household in the Hong Kong countryside
Authors: Ho Jimmy Tsz-wai
Published: March 2024

This paper discusses the cocreation of an emergent place-identity in a Hakka household in the Hong Kong countryside triggered by architectural restoration. Located in Kuk Po, a quintessential Hakka village that was established over 300 years ago, Yeung House was restored by the research team under a government-funded initiative to regenerate architectural values. Rebuilt in 1967, Yeung House has experienced decay and evolution over the years. It signifies the adaptive lifestyle of Hakka immigrants through its adapted siting, hybrid tectonics and modernised features. After restoration, Yeung House was repurposed into a base for education and research managed by the three house-owning villagers. Different activities were initiated by the villagers and coarranged by the research team. As a serendipitous outcome, the front yard of Yeung House has been activated into a multifunctional communal space. Subsequently, it is argued that a place-identity has emerged in Ng To and is influenced by the distinctiveness of the restored Yeung House and the continuity of the front yard. New meanings of the place have been created by the villagers through the practice of a potential, alternative lifestyle in the rural-urban parallel.
Clinical Characteristics of Adrenal Hemangioma
Authors: Zuo Yuzhi , Liang Zhen , Yang Shengmin , Pan Boju , Cheng Sihang , Zhou Zhien , Feng Tianrui , Yan Weigang , Wu Xingcheng
Published: March 2024

Objective

Adrenal hemangioma (AH) is a rare, benign adrenal tumor often detected incidentally by imaging. This retrospective study aimed to investigate the clinical characteristics of AH, including clinical and diagnostic imaging features, to improve the recognition and understanding of AH.

Methods

We retrospectively analyzed the medical records of patients diagnosed with AH at Peking Union Medical College Hospital between 2008 and 2022. Clinical manifestations, adrenal hormone levels, imaging findings, treatment approaches, and pathological results were collected and analyzed.

Results

Of the 7140 adrenal tumor patients, 40 (0.56%) had AH confirmed postoperatively. The mean age at diagnosis was 53.9 years, with a female predominance. Most (70%) were asymptomatic and diagnosed incidentally. Misdiagnosis before surgery was common, most frequently as pheochromocytoma. Imaging characteristics, especially enhanced computed tomography, revealed distinct features based on tumor size. Surgery was the main treatment, with laparoscopic adrenalectomy preferred.

Conclusion

This study elucidates the clinical characteristics of AH, including demographics, diagnostic challenges, and imaging features. AH often presents incidentally and is frequently misdiagnosed preoperatively. Recognizing distinct imaging characteristics and appropriate surgical management can enable accurate diagnosis and optimal treatment.
Role of the dynamin-related protein 2 family and SH3P2 in clathrin-mediated endocytosis in Arabidopsis thaliana
Authors: Gnyliukh Nataliia , Johnson Alexander , Nagel Marie-Kristin , Monzer Aline , Babić David , Hlavata Annamaria , Alotaibi Saqer S. , Isono Erika , Loose Martin , Friml Jiří
Published: March 2024

Clathrin-mediated endocytosis (CME) is vital for the regulation of plant growth and development through controlling plasma membrane protein composition and cargo uptake. CME relies on the precise recruitment of regulators for vesicle maturation and release. Homologues of components of mammalian vesicle scission are strong candidates to be part of the scission machinery in plants, but the precise roles of these proteins in this process are not fully understood. Here, we characterised the roles of the plant dynamin-related protein 2 (DRP2) family (hereafter DRP2s) and SH3-domain containing protein 2 (SH3P2), the plant homologue to recruiters of dynamins, such as endophilin and amphiphysin, in CME by combining high-resolution imaging of endocytic events in vivo and characterisation of the purified proteins in vitro. Although DRP2s and SH3P2 arrive similarly late during CME and physically interact, genetic analysis of the sh3p123 triple mutant and complementation assays with non-SH3P2-interacting DRP2 variants suggest that SH3P2 does not directly recruit DRP2s to the site of endocytosis. These observations imply that, despite the presence of many well-conserved endocytic components, plants have acquired a distinct mechanism for CME.
Psychological interventions for mood and cognition after stroke and transient ischaemic attack: A protocol for an umbrella review
Authors: Kontou Eirini , Shokraneh Farhad , das Nair Roshan , Quinn Terry , Leonardi-Bee Jo , Thorpe Naomi , Clifford Naomi , Williams Marie , Wydera Sandra , Drummond Avril
Published: March 2024

Background People who have had a stroke or a Transient Ischaemic Attack (TIA) can experience psychological and/or cognitive difficulties. The body of research for psychological and neuropsychological interventions after stroke is growing, however, published systematic reviews vary in scope and methodology, with different types and severity of strokes included, and at times, diverse conclusions drawn about the effectiveness of the interventions evaluated. In this umbrella review, we aim to systematically summarise the existing systematic reviews evaluating psychological interventions for mood and cognition post-stroke/TIA. Methods We will conduct this umbrella review according to the JBI Manual for Evidence Synthesis. The following databases will be searched from inception: Cochrane Database of Systematic Reviews, Database of Reviews of Effects (DARE), MEDLINE, Embase, CINAHL, PsycINFO, and Epistemonikos. Systematic reviews with or without meta-analysis published until the search date will be included. Reviews including psychological interventions addressing mood and/or cognition outcomes for any stroke type or severity will be screened for eligibility. A narrative synthesis, including content analysis, will be used. Each stage of the review will be processed by two independent reviewers and a third reviewer will be considered to resolve disagreements. The methodological quality of the included reviews will be assessed using AMSTAR 2. Discussion Existing systematic reviews provide varied evidence on the effectiveness of psychological interventions post-stroke/TIA. This umbrella review aims to summarise knowledge and evidence on different types of psychological and neuropsychological interventions targeting mood and cognition. Findings will highlight important knowledge gaps and help prioritise future research questions. Systematic Review Registration This protocol was prospectively registered with the International Prospective Register of Systematic Reviews (PROSPERO) on November 15, 2022; PROSPERO CRD42022375947.
Exploring the experiences of minoritised groups at life sciences conferences in the UK: new perspectives and actions to improve inclusivity in the sector
Authors: Dutta Ireena , Bishop Michelle , Rayner Julian C. , Creavin Treasa , Ahmed Saher , Clissold Hayley , Cornish Tinu , Wilson Kathlyn , Christoffersen Ashlee , Prentice Janice , Penda Victor
Published: March 2024

Attending and participating in scientific research meetings and conferences is a key mechanism for researchers to share information and knowledge, build networks, and establish relationships and collaborations to support career development. In the UK, researchers from minoritised or underrepresented groups, may have a different experience at a conference than their peers. As a high profile provider of genomics-focussed life science conferences, Wellcome Connecting Science is committed to ensuring that our events are as inclusive as possible. Here we discuss our commitments to improving access and inclusion for everyone at our scientific conferences and research meetings, and we encourage others in the sector to reflect and consider how they can also support equitable experiences.
Development of Drainage Tools for Facilitating the Creation of Topologically-Sound, Unidirectional Flow Tile Networks
Authors: Falasy Anamelechi , Cooke Richard Andrew
Published: March 2024

Highlights

New publicly accessible drainage design QGIS plugins were developed.

These tools were successfully used to create topologically-sound subsurface drainage layout networks.

The tools are easy to use and reduce the level of expertise required to prepare drainage networks that can be successfully sized and buried.

Abstract. An important step in designing a drainage system is laying out the network. Successful installation and sizing of the system require that the network be topologically sound and unidirectional. Online digitization of drainage systems does not always result in networks that meet these criteria. Tile lines may not be consistently digitized from upstream to downstream, and there may be disconnected segments, dangles, and overshoots. We have developed a set of open-source tools (plugins) in QGIS that convert a series of laterals and mains digitized on a map into a topologically-sound drainage network to facilitate both burying and sizing the drainage lines. Steps include reversing node numbering, if necessary, to ensure that tile nodes are numbered from upstream to downstream, connecting the ends of tile lines that are within a certain tolerance of each other, correcting overshoots, and setting an order for burying or calculating cumulative flow in line segments. An application example is presented using a proposed tile network layout at the university farm to demonstrate the capacity of these new tools to fix topologically disconnected tile lines and generate sound tile networks that can be successfully buried and sized. These easy-to-use tools are compatible with all versions of QGIS3 and may be freely downloaded or installed from the official QGIS Plugin Repository. Keywords: Line Geometry, Plugins, QGIS Software, Tile Layout Routines, Tile Nodes and Lines.
Philosophy's Role in Theorizing Psychopathology
Authors: Gibson Quinn Hiroshi
Published: March 2024

Abstract: It is a mistake to think that any philosophical contribution to the study of psychopathology is otiose. I identify three non-exhaustive roles that philosophy can and does occupy in the study of mental disorder, which I call the agenda-setting role, the synthetic role, and the regulative role. The three roles are illustrated via consideration of the importance of Jaspers' notion of understanding and its application to specific examples of mental disorder, including delusions of reference, Capgras delusion and other monothematic delusions, and clinical depression. Together the three roles assign to philosophy of psychopathology the task of determining how to situate the varieties of mental disorder within the system of interpretive and evaluative concepts that partially make up the dynamic but indispensable manifest image.
General spatial photonic Ising machine based on the interaction matrix eigendecomposition method
Authors: Wang Shaomeng , Zhang Wenjia , Ye Xin , He Zuyuan
Published: March 2024

The spatial photonic Ising machine has achieved remarkable advancements in solving combinatorial optimization problems. However, it still remains a huge challenge to flexibly map an arbitrary problem to the Ising model. In this paper, we propose a general spatial photonic Ising machine based on the interaction matrix eigendecomposition method. The arbitrary interaction matrix can be configured in the two-dimensional Fourier transformation based spatial photonic Ising model by using values generated by matrix eigendecomposition. The error in the structural representation of the Hamiltonian decreases substantially with the growing number of eigenvalues utilized to form the Ising machine. In combination with the optimization algorithm, as low as ∼65% of the eigenvalues are required by intensity modulation to guarantee the best probability of optimal solution for a 20-vertex graph Max-cut problem, and this percentage decreases to below ∼20% for near-zero probability. The 4-spin experiments and error analysis demonstrate the Hamiltonian linear mapping and ergodic optimization. Our work provides a viable approach for spatial photonic Ising machines to solve arbitrary combinatorial optimization problems with the help of the multi-dimensional optical property.
Ultra-broadband multi-tone frequency measurement based on the recirculating frequency shift of a frequency modulated continuous wave
Authors: Xiaoen Chen , Long Wang , Jingbo Li , Jianping Chen , Guiling Wu
Published: March 2024

We proposed an ultra-broadband multi-tone frequency measurement (FM) approach based on frequency modulated continuous wave (FMCW). This work aims to achieve wide-range multi-tone FM without image interference, using electrical components with narrow bandwidth and low sampling rate, while maintaining high FM accuracy. The FM range is largely increased by extending the bandwidth of the optical FMCW through a recirculating frequency shift (RFS) loop, from 0.001 GHz-16 GHz to 0.001 GHz-437.5 GHz. The bandwidth-extended optical FMCW coherently beats with a continuous wave (CW) light modulated by the signal under test (SUT) at the balanced photodetector (BPD). The following low-pass filter (LPF) outputs pulses at the time when the frequencies of FMCW and SUT are equal, constructing frequency-to-time mapping (FTTM). Owing to the zero-intermediate-frequency (zero-IF) architecture, image interference is avoided. In addition, the up- and down-chirps of FMCW are used to achieve self-reference, avoiding the utilizing of reference signals, which realizes high FM accuracy. In the experiment, a FM within 0.1 GHz-43.5 GHz is demonstrated using an available microwave generator (MG) with a maximum output frequency of 43.5 GHz. The FM errors are kept within ±10 MHz for all frequencies with a mean and standard deviation of −0.3 MHz and 3.17 MHz, respectively. The multi-tone resolution is about 60 MHz at the FMCW chirp rate of 3.1998 GHz/μs, which is consistent with the theoretical result. According to the theoretical derivation, the multi-tone resolution can be improved to 1 MHz by lowering the FMCW chirp rate.
Mode-selective power splitters for mode-division multiplexing optical networks
Authors: Gao Yuyang , Cui Jian , Zhou Xian , Chen Zhangyuan , Li Juhao
Published: March 2024

We propose an all-fiber mode-selective power splitter (MSPS) for non-circular-symmetric LP
lm
(l = 1, 2, …) modes, which is suitable for multicasting and optical performance monitoring in mode-division multiplexing optical fiber networks. The MSPSs are asymmetric two-core few-mode directional couplers composed of a few-mode fiber and a two-mode fiber. We theoretically studied the three conditions required by the MSPSs. By carefully choosing the core-to-core distance and coupling length, the MSPS can achieve arbitrary splitting ratio regardless of the modal field orientation of the input non-circular-symmetric LP mode. By using an asymmetric structure, the MSPS can ensure the power splitting only happens on the target non-circular-symmetric LP mode when the phase matching condition is satisfied. In addition, we designed and numerically simulated LP31 MSPSs with four kinds of splitting ratios, among which the one with 90/10 splitting ratio was fabricated based on tapering and polishing method. The fabricated LP31 MSPS is characterized and the results show that its splitting ratio is much more stable than regular LP31 mode-selective coupler.
Wave optical model for tomographic volumetric additive manufacturing
Authors: Wechsler Felix , Gigli Carlo , Madrid-Wolff Jorge , Moser Christophe
Published: March 2024

Tomographic Volumetric Additive Manufacturing (TVAM) allows printing of mesoscopic objects within seconds or minutes. In TVAM, tomographic patterns are illuminated onto a rotating glass vial which contains a photosensitive resin. Current pattern optimization is based on a ray optical assumption which ultimately leads to limited resolution around 20 µm and varying throughout the volume of the 3D object. In this work, we introduce a rigorous wave-based optical amplitude optimization scheme for TVAM which shows that high-resolution printing is theoretically possible over the full volume. The wave optical optimization approach is based on an efficient angular spectrum method of plane waves with custom written memory efficient gradients and allows for optimization of realistic volumes for TVAM such as (100μm)3 or (10 mm)3 with 5503 voxels and 600 angles. Our simulations show that ray-optics start to produce artifacts when the desired features are 20 µm and below and more importantly, the amplitude modulated TVAM can reach sub 20 µm features when optimizing the patterns using a full wave model.
Control of light polarization by optically-induced-chirality in photosensitive nematic fluids
Authors: Hao Luguo , Liang Fei , Jing Hongzhen , Xiang Ying , Salamon Péter , Éber Nándor , Buka Ágnes , Kohout Michal , Chen Jiawen , Pei Yanbo
Published: March 2024

Light polarization rotations, created by applied optical field, are examined experimentally and theoretically in a photosensitive chiral nematic fluid. The polarization rotation of the transmitted beam is initiated by illuminating the sample with uniform UV light. The operation is tunable and reversible, depending on the UV intensity. It was revealed that the rotations can be ascribed to the optical-field-induced chirality effect, where the helical structure in chiral nematics changes in accordance with the UV intensity. The evolution of the helical structure as well as its effect on the light polarization upon illumination by uniform UV light have been monitored experimentally and compared by calculations based on the continuum theory. Our results proved that a polarization field with specific characteristics can be achieved using the remote and precise optical control.
Can linear pre-emphasis mitigate the nonlinear distortion of light-emitting diodes?
Authors: Bojarczuk Juliusz , Marzecki Michal , Stepniak Grzegorz
Published: March 2024

Transmitter pre-emphasis is one of the techniques proposed to improve the relatively poor frequency responses of light-emitting diodes (LEDs) used in visible light communications (VLC) as light sources. However, according to the communications theory in linear channels, pre-emphasis may only be as good as the not particularly efficient feed-forward equalizer (FFE). Given the increase in peak-to-average power ratio (PAPR) caused by pre-emphasis, its use in place of receiver equalization can be considered counterproductive. In this study, we show that the performance of the transmitter pre-emphasis is indeed equivalent to the FFE at low input powers, where the LED is a linear system. However, at higher modulation voltages, the transmitter pre-emphasis has a clear advantage over FFE, as it mitigates the nonlinear distortion of the LED. This mechanism is for the first time to our knowledge explained in both theory and experiment.
DAC-less PAM4 signal generation using a silicon dual-drive push–pull MZI modulator
Authors: Chen Kaizhong , Yue Hengsong , Huang Jing , Chu Tao
Published: March 2024

In this study, we demonstrate DAC-less PAM-4 signal generation by driving a silicon MZI modulator based on a series push–pull configuration with two independent binary signals of varying amplitudes. Such configuration boosts transfer speed between PAM4 levels, leading to enhanced performance metrics compared to the differential driving scheme. Experimentally, our scheme demonstrated a lower bit-error rate compared to the differential scheme, proving its cost-efficiency and feasibility for PAM4 generation.
Fast-tracking action on the Sustainable Development Goals by enhancing national institutional arrangements
Authors: Akhtar-Schuster Mariam , Stringer Lindsay C. , Barger Nichole
Published: March 2024

Six years remain to achieve the Sustainable Development Goals (SDGs). Despite some progress, institutional effectiveness for SDG achievement has not been delivered at a national level. Identification and establishment of an institutional framework to operationalise the 2030 Agenda within national plans, giving science-based coordination of SDG implementation a central role, is urgently required to accelerate progress. This paper tackles this challenge. Drawing on literature analysis, it asks: 1) What are the deficiencies in institutional national arrangements that hinder SDG implementation? 2) How can existing institutional deficiencies in SDG implementation be addressed? and 3) How can institutional changes support fast-tracking of SDG implementation processes at national level? Findings show that country-specific horizontal institutional arrangements are usually advanced. However, national visions to improve mainstreaming across decision-making at different levels to enable whole-of-government and whole-of-society approaches to SDG implementation are commonly under-developed. Deficiencies are due to poor systematic engagement of scientific and technical expertise in operational day-to-day communication, as well as in the design, validation, implementation, monitoring and reporting of domestic SDG-related multi-stakeholder actions. Vertical institutional arrangements are complex, and risk resource-consuming, uncoordinated implementation. Our analyses suggest countries may benefit from establishing a national, centralised independent scientific and technical coordinating body for SDG implementation at national level, within existing science-based institutional arrangements. Such a body would not be led by governmental processes but would provide technical support to government agencies. We argue that scientific and technical skills in data and information management and quality control are central to coordinated and evidence-informed support, and could help to accelerate national SDG implementation. Such a supporting body would also enable a more joined-up approach between stakeholders working in the areas of science and technology, government and practice, improving orchestrated science-based actions and their auditing across sectors and stakeholder communities at national and sub-national levels. It would further guide actions to reduce trade-offs within national sustainable development aspirations, and would facilitate consideration of diverse values in advancing towards a durable and just transformative future. Such efforts are vital given the rapidly closing window of time for SDG achievement.
Effects of osteopathic manipulative treatment on maternal-fetal hemodynamics in third trimester pregnant women: A prospective study
Authors: Arruda Correia Maria Luisa , Peixoto Filho Fernando Maia , Gomes Júnior Saint Clair , de Jesus Guilherme Ramires
Published: March 2024

Objective

To evaluate the maternal-fetal hemodynamic effects after osteopathic manipulative treatment by measuring vital signs and Doppler velocimetry in third-trimester pregnant women.

Materials and methods

This is a prospective study with pregnant women undergoing outpatient follow-up and hospitalized in a ward at Instituto Fernandes Figueira/Fiocruz, between August 2021 to August 2022, during the SARS-CoV-2 pandemic. This study was registered in REBEC under Register Number RBR-9q7kvg and approved by the ethics committee under number 32216620.0.0000.5269. The study population was composed of 51 pregnant women between 28 and 40 weeks of gestation, over 18 years of age, allocated in a single group. Pregnancies with multiple fetuses, malformations, premature rupture of the membrane, and active labor were excluded. The procedures evaluated maternal-fetal hemodynamics using three consecutive measures of ultrasound examination with Doppler velocimetry, and three maternal vital signs measured by an electronic blood pressure monitor.

Results

Most vital signs changed after osteopathic treatment. However, only the systolic blood pressure (109.92 ±14.42 to 110.71±12.8, p = 0.033), diastolic blood pressure (79.8±11.54 to 77.57±9.44, p = 0.018) and heart rate (87.59±11.93 to 81.12±10.26, p = 0.000) in the sitting position, systolic blood pressure (110.75±13.26 to 108.59±13.07; p = 0.034) in the supine, and heart rate (83.22±11.29 to 80.39±11.0; p = 0.013) in left lateral decubitus reached statistical significance. The oximetry measures (98.55±0.64 to 98.67±0.68; p = 0.098) stayed stable during all three positions.

All artery values remained stable after treatment, and no statistically significant difference was recorded in the artery results.

Conclusion

Responses to osteopathic treatment in women in the third trimester of pregnancy did not affect uteroplacental and fetoplacental circulation. However, some maternal vital signs had statistically significant results, with a decrease in diastolic blood pressure and heart rate, and an increase in systolic blood pressure in the sitting position, a decrease of heart rate in the left lateral decubitus position, and systolic blood pressure in the supine position. All the results observed were maintained in the normal parameters. The study responses attest to the safety of using the osteopathic manipulative treatment for the fetus and for pregnant women with comorbidities.
Polyubiquitylated rice stripe virus NS3 translocates to the nucleus to promote cytosolic virus replication via miRNA-induced fibrillin 2 upregulation
Authors: Zhang Lu , Li Yao , Kuhn Jens H. , Zhang Kun , Song Qisheng , Liu Fang
Published: March 2024

Viruses are encapsidated mobile genetic elements that rely on host cells for replication. Several cytoplasmic RNA viruses synthesize proteins and/or RNAs that translocate to infected cell nuclei. However, the underlying mechanisms and role(s) of cytoplasmic—nuclear trafficking are unclear. We demonstrate that infection of small brown planthoppers with rice stripe virus (RSV), a negarnaviricot RNA virus, results in K63-linked polyubiquitylation of RSV’s nonstructural protein 3 (NS3) at residue K127 by the RING ubiquitin ligase (E3) LsRING. In turn, ubiquitylation leads to NS3 trafficking from the cytoplasm to the nucleus, where NS3 regulates primary miRNA pri-miR-92 processing through manipulation of the microprocessor complex, resulting in accumulation of upregulated miRNA lst-miR-92. We show that lst-miR-92 regulates the expression of fibrillin 2, an extracellular matrix protein, thereby increasing RSV loads. Our results highlight the manipulation of intranuclear, cytoplasmic, and extracellular components by an RNA virus to promote its own replication in an insect vector.