bluuebunny/crossref_metadata_2025 huggingface dataset:
Localised granulomatosis with polyangiitis in an older patient with rheumatoid arthritis
Authors: Capdevila-Reniu Aina , Rodríguez-Garcia Sebastian De la Cruz , Grafia Ignacio , Sanchez Marcelo , Martínez Daniel , Navarro-López Margarita , Prieto-González Sergio
Published: September 2019

New onset of granulomatosis with polyangiitis (GPA) occurring in patients previously diagnosed with rheumatoid arthritis (RA) is very uncommon. In older individuals, this condition is associated with high mortality, especially in those with renal involvement. We describe the first case of GPA in a patient older than 65 years diagnosed with RA without exposure to biologic disease-modifying anti-rheumatic drugs, presenting with pulmonary nodules due to a limited form of anti-neutrophil cytoplasmic antibody-negative GPA.
Hospitalization Pattern, Inpatient Service Utilization and Quality of Care in Patients With Alcohol Use Disorder: A Sequence Analysis of Discharge Medical Records
Authors: Han Xueyan , Jiang Feng , Zhou Huixuan , Needleman Jack , Guo Moning , Chen Yin , Liu Yuanli , Tang Yilang
Published: September 2019

Aims

To identify and group hospitalization trajectory of alcohol use disorder (AUD) patients and its associations with service utilization, healthcare quality and hospital-level variations.

Methods

Inpatients with AUD as the primary diagnosis from 2012 to 2014 in Beijing, China, were identified. Their discharge medical records were extracted and analyzed using the sequence analysis and the cluster analysis.

Results

Eight-hundred thirty-one patients were included, and their hospitalization patterns were grouped into four clusters: short stay (n = 565 (67.99%)), mean psychiatric length of stay in 3 years: (32.25 ± 18.69), repeated short stay (n = 211 (25.39%), 137.76 ± 88.8 days), repeated long stay (n = 41 (4.93%), 405.44 ± 146.54 days), permanent stay (n = 14 (1.68%), 818.14 ± 225.22 days). The latter two clusters (6.61% patients) used 37.26% of the total psychiatric hospital days and 33.65% of the total psychiatric hospitalization expenses. All the patients in the permanent stay cluster and 41.77% of the patients in the short stay cluster were readmitted at least once within 3 years. Two-hundred thirty-four patients (28.16%) were admitted at least once for non-psychiatric reasons, primarily for diseases of circulatory and digestive systems. Cluster composition varied significantly among different hospitals.

Conclusion

Hospitalization pattern of patients with AUD varies greatly, and while most (>2/3) hospitalizations were short stay, those with repeated long stay and permanent stay used more than one third of the hospital days and expenses. Our findings suggest interventions targeting at certain patients may be more effective in reducing resource utilization.
XMAn v2—a database of Homo sapiens mutated peptides
Authors: Flores Marcela Aguilera , Lazar Iulia M
Published: September 2019

The ‘Unknown Mutation Analysis (XMAn)’ database is a compilation of Homo sapiens mutated peptides in FASTA format, that was constructed for facilitating the identification of protein sequence alterations by tandem mass spectrometry detection. The database comprises 2 539 031 non-redundant mutated entries from 17 599 proteins, of which 2 377 103 are missense and 161 928 are nonsense mutations. It can be used in conjunction with search engines that seek the identification of peptide amino acid sequences by matching experimental tandem mass spectrometry data to theoretical sequences from a database.

Availability and implementation

XMAn v2 can be accessed from github.com/lazarlab/XMAnv2.

Supplementary information

Supplementary data are available at Bioinformatics online.
NERDD: a web portal providing access to in silico tools for drug discovery
Authors: Stork Conrad , Embruch Gerd , Šícho Martin , de Bruyn Kops Christina , Chen Ya , Svozil Daniel , Kirchmair Johannes
Published: September 2019

The New E-Resource for Drug Discovery (NERDD) is a quickly expanding web portal focused on the provision of peer-reviewed in silico tools for drug discovery. NERDD currently hosts tools for predicting the sites of metabolism (FAME) and metabolites (GLORY) of small organic molecules, for flagging compounds that are likely to interfere with biological assays (Hit Dexter), and for identifying natural products and natural product derivatives in large compound collections (NP-Scout). Several additional models and components are currently in development.

Availability and implementation

The NERDD web server is available at https://nerdd.zbh.uni-hamburg.de. Most tools are also available as software packages for local installation.
Protein–protein interaction site prediction through combining local and global features with deep neural networks
Authors: Zeng Min , Zhang Fuhao , Wu Fang-Xiang , Li Yaohang , Wang Jianxin , Li Min
Published: September 2019

Motivation

Protein–protein interactions (PPIs) play important roles in many biological processes. Conventional biological experiments for identifying PPI sites are costly and time-consuming. Thus, many computational approaches have been proposed to predict PPI sites. Existing computational methods usually use local contextual features to predict PPI sites. Actually, global features of protein sequences are critical for PPI site prediction.

Results

A new end-to-end deep learning framework, named DeepPPISP, through combining local contextual and global sequence features, is proposed for PPI site prediction. For local contextual features, we use a sliding window to capture features of neighbors of a target amino acid as in previous studies. For global sequence features, a text convolutional neural network is applied to extract features from the whole protein sequence. Then the local contextual and global sequence features are combined to predict PPI sites. By integrating local contextual and global sequence features, DeepPPISP achieves the state-of-the-art performance, which is better than the other competing methods. In order to investigate if global sequence features are helpful in our deep learning model, we remove or change some components in DeepPPISP. Detailed analyses show that global sequence features play important roles in DeepPPISP.

Availability and implementation

The DeepPPISP web server is available at http://bioinformatics.csu.edu.cn/PPISP/. The source code can be obtained from https://github.com/CSUBioGroup/DeepPPISP.

Supplementary information

Supplementary data are available at Bioinformatics online.
Reconstructing the ancestral phenotypes of great apes and humans (Homininae) using subspecies-level phylogenies
Authors: Yaxley Keaghan J , Foley Robert A
Published: September 2019

Owing to their close affinity, the African great apes are of interest in the study of human evolution. Although numerous researchers have described the ancestors we share with these species with reference to extant great apes, few have done so with phylogenetic comparative methods. One obstacle to the application of these techniques is the within-species phenotypic variation found in this group. Here, we leverage this variation, modelling common ancestors using ancestral state reconstructions (ASRs) with reference to subspecies-level trait data. A subspecies-level phylogeny of the African great apes and humans was estimated from full-genome mitochondrial DNA sequences and used to implement ASRs for 14 continuous traits known to vary between great ape subspecies. Although the inclusion of within-species phenotypic variation increased the phylogenetic signal for our traits and improved the performance of our ASRs, whether this was done through the inclusion of subspecies phylogeny or through the use of existing methods made little difference. Our ASRs corroborate previous findings that the last common ancestor of humans, chimpanzees and bonobos was a chimp-like animal, but also suggest that the last common ancestor of humans, chimpanzees, bonobos and gorillas was an animal unlike any extant African great ape.
Historical biogeography of Trigonostemon and Dimorphocalyx (Euphorbiaceae)
Authors: Yu Ren-Yong , Van Welzen Peter C
Published: September 2019

Trigonostemon and Dimorphocalyx are two morphologically similar genera in tropical Asia. We estimated their divergence times through a Bayesian clock analysis and reconstructed the historical biogeography using a likelihood analysis under the dispersal-extinction-cladogenesis (DEC) model and a statistical dispersal-vicariance analysis (S-DIVA). We have found that the two genera differ in their historical biogeography: Trigonostemon originated on the South-East Asian mainland, but one section dispersed to the Malay Peninsula and Borneo, where rapid speciation events occurred during the Pleistocene, whereas Dimorphocalyx originated on and extended to its current distribution from Borneo. The dispersal routes of both genera are well supported by the tectonic history and are comparable to the conclusions in previous case studies. Long-distance dispersals across Wallace’s line are of particular interest in biogeography. We compared the patterns of historical distribution and dispersal of our taxa and other comparable taxa in this area. Our data support the hypothesis that the Philippines is the most common stepping stone for crossing Wallace’s line. Furthermore, we consider that the frequent change of sea levels during the Pleistocene propelled the diversification of Trigonostemon section Trigonostemon in Borneo and the Malay Peninsula.
Antemortem volume loss mirrors TDP-43 staging in older adults with non-frontotemporal lobar degeneration
Authors: Bejanin Alexandre , Murray Melissa E , Martin Peter , Botha Hugo , Tosakulwong Nirubol , Schwarz Christopher G , Senjem Matthew L , Chételat Gael , Kantarci Kejal , Jack Clifford R , Boeve Bradley F , Knopman David S , Petersen Ronald C , Giannini Caterina , Parisi Joseph E , Dickson Dennis W , Whitwell Jennifer L , Josephs Keith A
Published: September 2019

The specific effect of TDP-43 pathology on grey matter volume in individuals without frontotemporal lobar degeneration is unclear. Bejanin et al. reveal a major and independent contribution of TDP-43 to neurodegeneration and shed light on the regional distribution of TDP-43-related atrophy in older adults.
A quantitative neuropathological assessment of translocator protein expression in multiple sclerosis
Authors: Nutma Erik , Stephenson Jodie A , Gorter Rianne P , de Bruin Joy , Boucherie Deirdre M , Donat Cornelius K , Breur Marjolein , van der Valk Paul , Matthews Paul M , Owen David R , Amor Sandra
Published: September 2019

Radioligands targeting the 18 kDa translocator protein (TSPO) are increasingly used to visualise inflammation in the brain. Nutma et al. report that TSPO expression in multiple sclerosis lesions originates mainly from astrocytes and microglia, but is not restricted to cells with a specific pro-inflammatory phenotype.
Sequence-Based Prediction of Olfactory Receptor Responses
Authors: Chepurwar Shashank , Gupta Abhishek , Haddad Rafi , Gupta Nitin
Published: September 2019

Computational prediction of how strongly an olfactory receptor (OR) responds to various odors can help in bridging the widening gap between the large number of receptors that have been sequenced and the small number of experiments measuring their responses. Previous efforts in this area have predicted the responses of a receptor to some odors, using the known responses of the same receptor to other odors. Here, we present a method to predict the responses of a receptor without any known responses by using available data about the responses of other conspecific receptors and their sequences. We applied this method to ORs in insects Drosophila melanogaster (both adult and larva) and Anopheles gambiae and to mouse and human ORs. We found the predictions to be in significant agreement with the experimental measurements. The method also provides clues about the response-determining positions within the receptor sequences.
The Effect of Exposure to Fear-Related Body Odorants on Anxiety and Interpersonal Trust Toward a Virtual Character
Authors: Quintana Pamela , Nolet Kévin , Baus Oliver , Bouchard Stéphane
Published: September 2019

A growing body of literature documents how exposure to another person's fear-related body odorants can increase one's own anxiety and interfere with processing of social information, such as facial expression and impression formation. Building on these results, we aimed to 1) test the hypothesis that exposure to fear-related odorant would affect impression formation through fear contagion and 2) verify whether these effects can be observed in an ecologically valid (i.e., virtual) environment. We proposed that exposure to fear-related odorant would cause receivers to feel more anxious, which in turn would lead them to report less trust toward an unknown virtual character. This study had 2 distinct phases. First, we collected perspiration odorants from the armpits of 12 male senders (i.e., the source of the odorant) during the viewing of either fear or joy inducing film clips. In the second phase, 53 women receivers were exposed to either a fear, joy, or neutral odorant (i.e., between-subjects design) by breathing through a gauze attached to a disposable respirator mask while immersed in a virtual bar. As expected, receivers exposed to fear odorants felt significantly more stressed. Mediation analysis also revealed an indirect effect of exposure on trust through anxiety. More specifically, the more anxious the receiver felt, the less she trusted the virtual character. Our results show for the first time that the impact of exposure to fear-related body odorants on negative interpersonal impression formation is mediated by the anxiety induced in the receiver.
The Invisible Burden: Diagnosing and Combatting Typhoid Fever in Asia and Africa
Authors: Pitzer Virginia E , Meiring James , Martineau Frederick P , Watson Conall H , Kang Gagandeep , Basnyat Buddha , Baker Stephen
Published: September 2019

Measuring the burden of typhoid fever and developing effective strategies to reduce it require a surveillance infrastructure that is currently lacking in many endemic countries. Recent efforts and partnerships between local and international researchers have helped to provide new data on the incidence and control of typhoid in parts of Asia and Africa. Here, we highlight examples from India, Nepal, Vietnam, Fiji, Sierra Leone, and Malawi that summarize past and present experiences with the diagnosis, treatment, and prevention of typhoid fever in different locations with endemic disease. While there is no validated road map for the elimination of typhoid, the lessons learned in studying the epidemiology and control of typhoid in these settings can provide insights to guide future disease control efforts.
Epidemiology and Diagnostics of Carbapenem Resistance in Gram-negative Bacteria
Authors: Nordmann Patrice , Poirel Laurent
Published: September 2019

Carbapenem resistance in gram-negative bacteria has caused a global epidemic that continues to grow. Although carbapenemase-producing Enterobacteriaceae have received the most attention because resistance was first reported in these pathogens in the early 1990s, there is increased awareness of the impact of carbapenem-resistant nonfermenting gram-negative bacteria, such as Acinetobacter baumannii, Pseudomonas aeruginosa, and Stenotrophomonas maltophilia. Moreover, evaluating the problem of carbapenem resistance requires the consideration of both carbapenemase-producing bacteria as well as bacteria with other carbapenem resistance mechanisms. Advances in rapid diagnostic tests to improve the detection of carbapenem resistance and the use of large, population-based datasets to capture a greater proportion of carbapenem-resistant organisms can help us gain a better understanding of this urgent threat and enable physicians to select the most appropriate antibiotics.
Impact of a Telehealth-Based Antimicrobial Stewardship Program in a Community Hospital Health System
Authors: Shively Nathan R , Moffa Matthew A , Paul Kathleen T , Wodusky Eric J , Schipani Beth Ann , Cuccaro Susan L , Harmanos Mark S , Cratty Michael S , Chamovitz Bruce N , Walsh Thomas L
Published: September 2019

Background

Data on antimicrobial stewardship programs (ASPs) facilitated via telehealth in the community hospital setting are limited.

Methods

A telehealth-based ASP was implemented in 2 community hospitals (285 and 176 beds). Local pharmacists without residency or prior antimicrobial stewardship training were trained to conduct prospective audit and feedback. For approximately 60 minutes 3 times weekly at the 285-bed hospital and 2 times weekly at the 176-bed hospital, infectious diseases (ID) physicians remotely reviewed patients on broad-spectrum antibiotics and those admitted with lower respiratory tract infections and skin and soft tissue infections with local pharmacists. Recommendations for ASP interventions made by ID physicians were relayed to primary teams and tracked by local pharmacists. Antimicrobial utilization was collected in days of therapy (DOT) per 1000 patient-days (PD) for a 12-month baseline and 6-month intervention period, and analyzed with segmented linear regression analysis. Local ID consultations were tracked and antimicrobial cost savings were estimated.

Results

During the 6-month intervention period, 1419 recommendations were made, of which 1262 (88.9%) were accepted. Compared to the baseline period, broad-spectrum antibiotic utilization decreased by 24.4% (342.1 vs 258.7 DOT/1000 PD; P < .001) during the intervention period. ID consultations increased by 40.2% (15.4 consultations per 1000 PD vs 21.5 consultations per 1000 PD; P = .001). Estimated annualized savings on antimicrobial expenditures were $142 629.83.

Conclusions

An intense ASP model, facilitated in the community hospital setting via telehealth, led to reduced broad-spectrum antimicrobial utilization, increased ID consultations, and reduced antimicrobial expenditures.
Kinship alters the effects of forced cohabitation on body weight, mate choice and fitness in the rat-like hamster Tscheskia triton
Authors: Rao Xiaoping , Zhang Jian-Xu , Liu Dingzhen , Cong Lin
Published: September 2019

It has been documented that social isolation imparts deleterious effects on gregarious rodents species, but caging in group imparts such effects on solitary rodents. This study was attempted at examining how kinship to affect body weight, behavioral interaction, mate choice and fitness when we caged male and female rat-like hamsters Tscheskia triton in pair, a solitary species. We found that females paired with nonsibling males became heavier than the females paired with sibling males, but both agonistic and amicable behavior between paired males and females did not differ between sibling and nonsibling groups. This indicated that kinship might reduce females’ obesity in response to forced cohabitation, and dissociation might exist between physiological and behavioral responses. Furthermore, binary choice tests revealed that social familiarity between either siblings or nonsiblings decreased their investigating time spent in opposite sex conspecific of cage mates and/ or their scents as compared with those of non-mates, suggesting effects of social association on mate and kin selection of the hamsters. On the other side, both females and males caged in pair with siblings show a preference between unfamiliar siblings or their scents and the counterparts of nonsiblings after two month separation, indicating that the kin recognition of the hamsters might also rely on phenotype matching. In addition, cohabitation (or permanent presence of fathers) elicited a lower survival of pups in nonsibling pairs than sibling pairs, but did not affect litter size, suggesting that kinship affects fitness when housing male and female ratlike hamsters together. Therefore, inbreeding might be adapted for rare and endangered animals.
Activity budgets in a group of Sichuan snub-nosed monkeys in Shennongjia Nature Reserve, China
Authors: Li Yiming
Published: September 2019

We examined time allocation by Sichuan snub-nosed monkeys Rhinopithecus roxellana in the montane, temperate and highly seasonal forests of the Shennongjia Nature Reserve in China, in order to improve our understanding of the ecological and social influences on monkey behavior. We collected data on activity budgets in relation to food availability in a group of monkeys from July 2003 to September 2004 (except February 2004), using instantaneous scan samples. The monkeys spent 36.21% of daytime moving (n = 2l, 269 records), 24.39% foraging, 9.33% inactive, 11.7% performing social behaviors, and 18.38% performing other behaviors. There were seasonal and annual variations in the proportions of time devoted to some activities. These variations were largely attributed to seasonal or annual fluctuations in the distribution and quality of food resources. Adult males spent more time moving, searching, and displaying other behaviors' but less time feeding and performing social behaviors than adult females. Adults performed other behaviors more often and moving less often than juveniles. These differences in activity budgets may reflect fundamental differences in reproductive biology, parental investment, and development among the different age/sex classes.
Adaptive changes of gastro-entero-pancreatic system endocrine cells in the black-spotted pond frog Rana nigromaculata after fasting
Authors: Pan Hongzhen , Chen Honghong , Zhu Lianjiu , Li Yang , Li Changchun , Zhang Shengzhou
Published: September 2019

Changes in distribution density, morphology and secretory content of endocrine cells in the gastro- entero-pancreatic system of black-spotted frogs Rana nigromaculata before and after fasting were investigated using immunohistochemistry and antisera to six gut hormones. Six types of endocrine cells were detected in the digestive tract of Rana nigromaculata, including 5-hydroxytryptamine (5-HT), gastrin (GAS), somatostatin (SOM), glucagon (GLU), pancreatic polypeptide (PP) and vasoactive intestinal polypeptide (VIP) cells. After fasting, the density of 5-HT cells in the esophagus, cardia and fundus, GAS cells in the fundus and pylorus, PP cells in the fundus decreased significantly (P < 0.01), while SOM cells in the cardia, GLU cells in the rectum increased significantly (P < 0.01). The cytoplasmic processes of 5-HT cells became shorter or not detectable. The secretory content of GAS cells reduced in the cardia. The positive immunostaining reaction in the perinuclear region of SOM cells in the cardia, fundus and pylorus became weaker, while the staining intensity in the periphery of these cells became stronger. VIP cells were not detectable in the whole digestive tract after fasting. Five types of endocrine cells were found in the pancreas of Rana nigromaculata, including 5-HT, GAS, SOM, GLU and PP cells. After fasting, the density of 5-HT cells decreased slightly (P > 0.05), while SOM, GAS, GLU and PP cells increased significantly (P < 0.01). Furthermore, the secretory content of GLU cells increased significantly. Considering their functionalities, our results indicate that the changes of GEP endocrine cells in Rana nigromaculata responded adaptively to starvation-induced stress.
Variation in the timing of river entry of Atlantic salmon (Salmo salar L.) in the Baltic
Authors: Kuparinen Anna , Merilä Juha
Published: September 2019

The timing of river entry in the Atlantic salmon is known to depend on genetic, demographic and environmental factors, but little is known about the relative magnitude of among population and among year variation and covariation in this respect in natural state Atlantic salmon rives. To investigate this, variability in the timing of river entry in three historical Finnish Atlantic salmon populations were analyzed using salmon trap data collected during 1870 - 1902. The analyses reveled that 1) the timing of river entry differed substantially and consistently among the rivers, and that 2) variation among the rivers was much larger than variation among years. Annual variations were not explained by regional environmental conditions, whereas in one river the timing of the local flood peak was a significant predictor of the timing of river entry. Differences in the timing of salmon entry to geographically closely situated rivers suggests that a regionally fixed opening date for coastal fisheries might not be the best management strategy as it may lead to uneven exploitation of salmon populations from different rivers
Breeding strategy of Acrossocheilus fasciatus in the Puxi Stream of the Huangshan Mountain
Authors: Yan Yunzhi , Guo Lili , Xiang Xiuying , Xi Yilong , Chen Yifeng
Published: September 2019

Breeding strategies of Acrossocheilus fasciatus were studied from 592 specimens collected monthly during May 2007 and April 2008 in the Puxi Stream of the Huangshan Mountain. Sex ratio of the studied population was 0.90 : 1 (♀ : ♂), not significantly different from 1:1. Both sexes reached their first sexual maturity at age 2 (the second calendar year of their birth). Fifty percent of females and males reached maturity at a total length of 69.75 mm and 69.36 mm respectively, and the minimum total length was 61.54 mm and 58.96 mm, respectively. Based on the monthly changes in gonado-somatic index and egg-development process, the breeding season of the population was from May to August, with one obvious interval (in June) occurring in the breeding activity for the females. The nonsynchronous development of oocytes observed in mature ovaries indicated that A. fasciatus is a batch spawner. Absolute fecundity of A. fasciatus ranged from 308 to 2002 eggs with a mean of 857 eggs, increased significantly with total length, and was significantly different among three age groups. Relative fecundity ranged from 38.63 to 71.70 egg/g with a mean of 53.29 egg/ g, and was not significantly different among the three age groups. It was suggested that these reproductive characteristics were adaptive strategies for A. fasciatus to acclimatize to lotic water where environmental factors were unstable but predictable.
Using endocarp-remains of seeds of wild apricot Prunus armeniaca to identify rodent seed predators
Authors: Zhang Hongmao , Wang Wei
Published: September 2019

Some rodent-dispersed seeds have a hard seed-coat (e.g.woody endocarp). Specific scrapes or dental marks on the hard seed-coat left by rodents when they eat these seeds can be used to identify seed predators. In this study we measured the morphological traits of endocarp-remains of seeds of wild apricot Prunus armeniaca used by Chinese white-bellied rats Niviventor confucianus and Korean field mice Apodemus peninsulae. We established their Fisher’s linear discriminant functions to separate endocarp-remains between the two predators. A total of 90.0% of the endocarp-remains left by Korean field mice and 88.0% of those left by Chinese white-bellied rats were correctly classified. The overall percentage of correct classification was 89.0%. One hundred and sixty endocarp-remains of unknown what species predated them were classified using the functions. The method may allow more reliable quantitative studies of the effects of Chinese white-bellied rats and Korean field mice on seed consumption and dispersal of wild apricot and this study might be used for reference in other studies of seed predators identification on hard seeds.
Fuel load and flight ranges of blackcaps Sylvia atricapilla in northern Iberia during autumn and spring migrations
Authors: Arizaga Juan , Barba Emilio
Published: September 2019

Fuel accumulation, mainly as fatty acids, is one of the main characteristics of migratory birds. Studying to what extent each population or species manages fuel load and how it varies along routes of migration or between seasons (autumn and spring migrations) is crucial to our understanding of bird migration strategies. Our aim here was to analyse whether migratory blackcaps Sylvia atricapilla passing through northern Iberia differ in their mean fuel loads, rate of fuel accumulation and ‘potential’ flight ranges between migration seasons. Blackcaps were mist netted for 4 h-periods beginning at dawn from 16 September to 15 November 2003 - 2005, and from 1 March to 30 April 2004 - 2006 in a European Atlantic hedgerow at Loza, northern Iberia. Both fuel load and fuel deposition rate (this latter assessed with difference in body mass of within-season recaptured individuals) were higher in autumn than in spring. Possible hypotheses explaining these results could be seasonal-associated variations in food availability (likely lower during spring than during autumn), the fact that a fraction of the migrants captured in spring could breed close to the study area and different selective pressures for breeding and wintering.
The advertisement call of the giant spiny frog Paa spinosa
Authors: Yu Baogen , Zheng Rongquan
Published: September 2019

We analyzed the advertisement call of Paa spinosa at Yuliang Mountain, Lanxi, Zhejiang Province, in eastern China. Temporal and spectral call parameters were analyzed, along with call intensity. Calls comprised of three to seven notes, the last of which had the longest duration. Three formants (harmonics) were clearly distinguishable from the audio spectrogram. The dominant frequency ranged from 411 - 1534 Hz, and was either the first or the second formant. The number of notes within a call was positively correlated to air temperature, so that calls contained more notes during the day. Also, the dominant frequency appeared to be lower at the highest temperature.
Shark scavenging behavior in the presence of competition
Authors: Gerry Shannon P. , Scott Andrea J.
Published: September 2019

The distribution of organisms within a community can often be determined by the degree of plasticity or degree of specialization of resource acquisition. Resource acquisition is often based on the morphology of an organism, behavior, or a combination of both. Performance tests of feeding can identify the possible interactions that allow one species to better exploit a prey item. Scavenging behaviors in the presence or absence of a competitor were investigated by quantifying prey selection in a trophic generalist, spiny dogfish Squalus acanthias, and a trophic specialist, smooth-hounds Mustelus canis, in order to determine if each shark scavenged according to its jaw morphology. The diet of dogfish consists of small fishes, squid, ctenophores, and bivalves; they are expected to be nonselective predators. Smooth-hounds primarily feed on crustaceans; therefore, they are predicted to select crabs over other prey types. Prey selection was quantified by ranking each prey item according to the order it was consumed. Dietary shifts were analyzed by comparing the percentage of each prey item selected during solitary versus competitive scavenging. When scavenging alone, dogfish prefer herring and squid, which are easily handled by the cutting dentition of dogfish. Dogfish shift their diet to include a greater number of prey types when scavenging with a competitor. Smooth-hounds scavenge on squid, herring, and shrimp when alone, but increase the number of crabs in the diet when scavenging competitively. Competition causes smooth-hounds to scavenge according to their jaw morphology and locomotor abilities, which enables them to feed on a specialized resource.
Effects of excluding bottom-disturbing mobile fishing gear on abundance and biomass of groundfishes in the Stellwagen Bank National Marine Sanctuary, USA
Authors: Brown Briana K. , Soule Elizabeth , Kaufman Les
Published: September 2019

The Stellwagen Bank National Marine Sanctuary (southern Gulf of Maine, northwest Atlantic) is partially overlapped by the Western Gulf of Maine Closure Area (WGMCA). This is a region in which mobile, bottom-disturbing fishing gear has been banned by the New England Fishery Management Council to facilitate the rebuilding of depleted groundfish populations. We assessed the effects and effectiveness of the WGMCA on groundfish assemblages using habitat-stratified (gravel, sand, mixed benthic habitats) sampling by means of a commercial trawler, inside and outside of the WGMCA. Sampling occurred over three month-long sampling periods in 2004-2005, two during the spring seasons and one during the fall season. A total of 18 species were analyzed for protection effects. After controlling for substratum, location and sampling season, eight groundfish species exhibited higher mean proportional abundance inside than outside the WGMCA while two were proportionally more abundant on average outside of the closure. Four species had higher mean proportional biomasses on average inside the closure and three outside. We conclude that the WGMCA may be achieving its goal of rebuilding abundance and biomass for some commercially targeted groundfishes but not all. This study, six to seven years post-closure establishment, reveals fine-scale spatial and taxonomic complexity which will require a very different monitoring protocol than the one currently in place if adaptive management is to be successful in the region.
Postconflict behavior among female Sichuan snub-nosed monkeys Rhinopithecus roxellana within one-male units in the Qinling Mountains, China
Authors: Zhang Jian , Zhao Dapeng , Li Baoguo
Published: September 2019

For group-living primates, the information on postconflict management is crucial for understanding primate competition and cooperation. However, such information is poorly known for snub-nosed monkeys, especially for wild populations. In this study, from September 2007 to June 2008, we investigated postconflict behavior among adult females Sichuan snub-nosed monkeys Rhinopithecus roxellana within one-male units in a wild, provisioned group in the Qinling Mountains of China by means of the time-rule method and the PC-MC method. We obtained a total of 81 PC-MC pairs and each individual was involved in only 0.004 aggressive behavior per observation hour. The first affiliative behavior was more likely to occur within the first minute after a conflict. The postconflict affiliative behaviors most often seen were contact-sit, embrace and grooming. The affiliative contacts between adult females occur due to selective attraction, i.e. reconciliation. The pattern of postconflict affiliation demonstrates that the R. roxellana belongs to a tolerant species.
First evidence of prey capture and meat eating by wild Yunnan snub-nosed monkeys Rhinopithecus bieti in Yunnan, China
Authors: Ren Baoping , Li Dayong , Liu Zhijin , Li Baoguo , Wei Fuwen , Li Ming
Published: September 2019

Most extant nonhuman primates occasionally prey on fast-moving, warm-blooded animals; however, Indriidae, Lepilemuridae, and Colobinae either scavenged for meat or did not eat meat at all. Here we report six cases of animal consumption by the snub-nosed monkey Rhinopithecus bieti in a wild, habituated group between 2004 and 2009 in Yunnan, China. At present, only males in an all-male unit within the study group were involved in active hunting. Such a male-biased activity may be related to the group structure and spatial spread of R. bieti. Two females were observed eating freshly killed birds. The findings confirmed that R. bieti engaged in scavenging and, when hunting, employed a cranio-cervical bite to kill their prey. Meat eating is likely a nutrient maximization feeding strategy in R. bieti, especially in males. A begging behavior occurred after successful prey capture. Although begging was observed, no sharing of the meat was seen. The present findings illuminate the dietary diversity of R. bieti and their ability to expand their dietary spectrum.
Vigilance behavior of pyrenean chamois Rupicapra pyrenaica pyrenaica: Effect of sex and position in the herd
Authors: Dalmau Antoni , Ferret Alfred , Manteca Xavier
Published: September 2019

The Pyrenean chamois Rupicapra pyrenaica pyrenaica is a mountain-dwelling ungulate with an extensive presence in open areas. Optimal group size results from the trade off between advantages (a reduction in the risk of predation) and disadvantages (competition between members of the herd) of group living. In addition, advantages and disadvantages of group living may vary depending on the position of each individual within the herd. Our objective was to study the effect of central vs. peripheral position in the herd on feeding and vigilance behavior in male and female Pyrenean chamois and to ascertain if a group size effect existed. We used focal animal sampling and recorded social interactions when a focal animal was involved. With males, vigilance rate was higher in the central part of the group than at the periphery, probably due to a higher density of animals in the central part of the herd and a higher probability of being disturbed by conspecifics. With females, vigilance rate did not differ according to position in the herd. Females spent more time feeding than males, and males showed a higher frequency of the vigilance behavior than females. We did not observe a clear relationship between group size and vigilance behavior. The differences in vigilance behavior might be due to social interactions.
Comparative studies on storage cells in tardigrades during starvation and anhydrobiosis
Authors: Reuner Andy , Hengherr Steffen , Brümmer Franz , Schill Ralph O.
Published: September 2019

The impact of starvation and anhydrobiosis on the number and size of the storage cells in the tardigrade species Milnesium tardigradum, Paramacrobiotus tonollii and Macrobiotus sapiens was investigated to gain more insight on the energetic side of anhydrobiosis. Storage cells are free floating cells within the body cavity of tardigrades and are presumed to store and release energy in form of glycogen, protein and fat to maintain a constant nutrient regime for the other tissues. The body size of the animals was not correlated with the size of the storage cells, however, M. tardigradum the largest species analysed also had the largest storage cells. A reduction in the size of the storage cells is apparent in all three species after seven days of starvation. A seven-day period of anhydrobiosis leads to a decrease in cell size in M. tardigradum but not in P. tonollii and M. sapiens. Although M. sapiens was raised on green algae, and M. tardigradum and P. tonollii were fed with rotifers and nematodes this difference in nourishment was not reflected in the response of the storage cells to anhydrobiosis.
Influence of social upbringing on the activity pattern of captive lion Panthera leo cubs: Benefits of behavior enrichment
Authors: Ncube Sibonokuhle , Ndagurwa Hilton Garikai Taambuka
Published: September 2019

The influence of social upbringing on the activity pattern of lion Panthera leo cubs was investigated at three sites. In this study, stimulus objects such as sticks, grass, fresh dung (elephant Loxondota africana, zebra Equus quagga, impala Aepyceros melampus, duiker Sylvicapra grimmia, kudu Tragelaphus strepsiceros, giraffe Giraffa camelopardalis and wildebeest Connochaetes taurinus) and cardboard boxes, were utilized in an enrichment program aimed at encouraging active behaviors of captive lion cubs at Antelope Park and Masuwe. Lion cubs at Chipangali were not behaviorally enriched. Activity patterns were recorded for 10 days at each site. We recorded moving, resting, playing, grooming, visual exploration and display of hunting instincts. We found that behavioral enrichment enhanced the active behaviors of captive lion cubs. Orphan-raised cubs spent more time moving, playing and displaying hunting instincts than mother-raised cubs, but the time spent grooming was similar across areas and suggests that grooming is not influenced by enrichment. Mother-raised cubs spent more time engaged in visual exploration than orphan-raised cubs and this could be a behavior acquired from mothers or a result of confidence to explore because of their presence. Activity patterns were different among time treatments across our three study sites. Based on these findings, we suggest that lion cubs raised in captivity could benefit from behavioral enrichment to encourage active behaviors essential for eventual reintroduction into the wild.
Pelage color of red bats Lasiurus borealis varies with body size: An image analysis of museum specimens
Authors: Davis Andrew K. , Castleberry Steven B.
Published: September 2019

Mammalian pelage color can vary among individuals of many species, although this intraspecific variation is often overlooked by researchers, perhaps because of its sometimes subtle nature and difficulty in assessing it quantitatively. Thus, such variation is rarely studied in mammals, and this is especially true within the order Chiroptera, where there has been very little empirical research. We examined museum specimens of red bats (Lasiurus borealis, family Vespertilionidae) from Georgia, USA, to determine the extent of sexual dimorphism in pelage color and to explore possible associations between body size and pelage color. We photographed 54 specimens under uniform lighting, and used an image analysis program to measure pelage hue on the uropatagium region, which is fully furred in members of the genus Lasiurus. Statistical analyses of pelage hue scores showed males had significantly redder pelage than females when considered alone, but when examined together with effects of body size and collection year, sex was not significant, and collection year and body size were. More recent specimens tended to be less red than older specimens, which might indicate a wearing of the buffy tips of hairs from older specimens, and smaller bats of both sexes tended to be more red. These interesting findings are encouraging and we suggest that future explorations into intraspecific variation in pelage color of bats using this or similar approaches are warranted to clarify the significance of the patterns. This study also demonstrated that care must be taken in analyses of mammalian pelage color from older museum skins, or at least that researchers must take into account the age of the specimens.
Circatidal rhythms of locomotion in the American horseshoe crab Limulus polyphemus: Underlying mechanisms and cues that influence them
Authors: Chabot Christopher C. , Watson Winsor H.
Published: September 2019

While eye sensitivity in the American horseshoe crab Limulus polyphemus has long been known to be under the control of an endogenous circadian clock, only recently has horseshoe crab locomotion been shown to be controlled by a separate clock system. In the laboratory, this system drives clear activity rhythms throughout much of the year, not just during the mating season when horseshoe crabs express clear tidal rhythms in the field. Water temperature is a key factor influencing the expression of these rhythms: at 17̊C tidal rhythms are expressed by most animals, while at 11̊C expression of circatidal rhythms is rarely seen, and at 4̊C rhythms are suppressed. Neither long (16:8 Light:Dark) nor short (8:16) photoperiods modify this behavior at any of these temperatures. Synchronization of these circatidal rhythms can be most readily effected by water pressure cycles both in situ and in the lab, while temperature and current cycles play lesser, but possibly contributory, roles. Interestingly, Light:Dark cycles appear to have synchronizing as well as “masking” effects in some individuals. Evidence that each of two daily bouts of activity are independent suggests that the Limulus circatidal rhythm of locomotion is driven by two (circalunidian) clocks, each with a period of 24.8h. While the anatomical locations of either the circadian clock, that drives fluctuations in visual sensitivity, or the circatidal clock, that controls tidal rhythms of locomotion, are currently unknown, preliminary molecular analyses have shown that a 71 kD protein that reacts with antibodies directed against the Drosophila PERIOD (PER) protein is found in both the protocerebrum and the subesophageal ganglion.
Seasonal movement of the American horseshoe crab Limulus polyphemus in a semi-enclosed bay on Cape Cod, Massachusetts (USA) as determined by acoustic telemetry
Authors: James-Pirri Mary-Jane
Published: September 2019

American horseshoe crabs Limulus polyphemus were tracked using acoustic telemetry and traditional tagging in a semi-enclosed bay on Cape Cod (Pleasant Bay), Massachusetts, USA, to determine seasonal movement patterns. Fifty-five actively spawning females were fitted with transmitters in 2008 and 2009 and were tracked using acoustic telemetry from May 2008 through July 2010. Fifteen crabs with transmitters also had archive depth-temperature tags attached. In addition, over 2000 spawning crabs (males and females) were tagged with US Fish and Wildlife (USFWS) button tags over the same period. Ninety-one percent of the crabs with transmitters were detected during this study. In the spring, crabs were primarily located in the northern section of the bay near spawning beaches, whereas in the fall crabs moved towards the deeper portions of the bay, and some may have overwintered in the bay. There was evidence that a majority (58%–71%) of the females with transmitters spawned in two sequential seasons. One archive tag was recovered resulting in a year-long continuous record of depth and temperature data that, when integrated with telemetry data, indicated that the crab overwintered in the bay. The live recapture rate of crabs with USFWS button tags was 11%, with all re-sighted crabs except one observed inside Pleasant Bay. Eighty-three percent of recaptures were found within 2.5km of the tagging location, and 51% were observed at the same beach where they were tagged. This study provides further evidence that horseshoe crabs in Pleasant Bay may be philopatric to this embayment.
Intensive use of an intertidal mudflat by foraging adult American horseshoe crabs Limulus polyphemus in the Great Bay estuary, New Hampshire
Authors: Lee Wan-Jean
Published: September 2019

Although concerns about harvesting levels of the American Horseshoe Crab, Limulus polyphemus have prompted increased research into its ecology, current understanding of the species’ foraging ecology is mostly limited to mid-Atlantic populations. This study elucidates the spatial and temporal pattern of Limulus foraging on an intertidal mudflat of a northern New England estuary. A novel survey method was used to monitor Limulus foraging activity without disturbing the sediment. A fixed 50 m×2 m transect was monitored with monthly surveys of the number of Limulus feeding pits from June to October 2009, May and June 2010. Snorkelling surveys were also carried out to observe individual behavior and examine the spatial scale of activity of individual animals. Results showed frequent and intensive use of the mudflat by foraging Limulus. Limulus were actively foraging within the survey area during all months surveyed. Foraging patterns exhibited a seasonal pattern with activity levels peaking in August 2009 and increased significantly towards the end of the study in June 2010. It was also shown that Limulus intertidal foraging persisted and peaked after the spring breeding season. Observations of foraging Limulus revealed that individual predators dig multiple pits within a single high tide, with little disturbance to the sediment in between. In addition to altering the perception of Limulus as a subtidal predator outside of the breeding season, findings from this study suggests a segregation of spawning and feeding habitats, thus underscoring the need to consider a wider range of critical habitats in the management of Limulus populations.