bluuebunny/crossref_metadata_2025 huggingface dataset:
Phenotypic variation of fruit and ecophysiological traits among maqui (Aristotelia chilensis [Molina] Stuntz) provenances established in a common garden
Authors: Yáñez Marco A. , González Benita , Espinoza Sergio E. , Vogel Hermine , Doll Ursula
Published: January 2022

The domestication of forest species has traditionally relied on productivity issues. However, today there are concerns about the potential responses of natural populations and new cultivars to extreme climatic conditions derived from climate change and how to incorporate this knowledge into the domestication programs.Aristotelia chilensis(Molina) Stuntz (‘Maqui’) is a widely distributed native species in Chile. Its berry is considered a “super fruit” with an increasing interest in the food industry. This study investigated the phenotypic variation of growth, fruit, and ecophysiological traits of 20A. chilensisclones originated from six provenances along the latitudinal gradient and established in a common-garden experiment in the Mediterranean zone of central Chile (center part of the species distribution). Differences among provenances were observed for most of the  traits under study, especially between the northern and southernmost provenances (i.e., San Fernando versus Entre Lagos). Northern provenances showed higher development of vegetative tissue and fruit yield but lower intrinsic water use efficiency (WUEint) compared with southern ones. Clonal variation within provenances was found significant for the ripening index, WUEint, and fruit number and weight but not significant for traits related to the crown and leaf morphology. A genetic differentiation due to latitudinal cline was not evident in this study, but differences among provenances suggest local adaptation for some traits. The genotypic variation in productive traits must be considered in the outgoing domestication of the species and future selection programs.
Performance-based comparison of Yamada–Ota and Hamilton–Crosser hybrid nanofluid flow models with magnetic dipole impact past a stretched surface
Authors: Gul Hina , Ramzan Muhammad , Nisar Kottakkaran Sooppy , Mohamed Roshan Noor , Ghazwani Hassan Ali S.
Published: January 2022

The nanofluid flows play a vital role in many engineering processes owing to their notable industrial usage and excessive heat transfer abilities. Lately, an advanced form of nanofluids namely “hybrid nanofluids” has swapped the usual nanofluid flows to further augment the heat transfer capabilities. The objective of this envisaged model is to compare the performance of two renowned hybrid nanofluid models namely Hamilton–Crosser and Yamada–Ota. The hybrid nanoliquid (TiO2-SiC/DO) flow model is comprised of Titanium oxide (TiO2) and Silicon carbide (SiC) nanoparticles submerged into Diathermic oil (DO). The subject flow is considered over a stretched surface and is influenced by the magnetic dipole. The uniqueness of the fluid model is augmented by considering the modified Fourier law instead of the traditional Fourier law and slip conditions at the boundary. By applying the suitable similarity transformations, the system of ordinary differential equations obtained from the leading partial differential equations is handled by the MATLAB solver bvp4c package to determine the numerical solution. It is divulged that the Yamada–Ota model performs considerably better than the Hamilton–Crosser flow model as far as heat transfer capabilities are concerned. Further, the velocity reduces on increasing hydrodynamic interaction and slip parameters. It is also noted that both temperature profiles increase for higher hydrodynamic interaction and viscous dissipation parameters. The envisioned model is authenticated when compared with an already published result in a limiting case.
Intraoperative hand strength as an indicator of consciousness during awake craniotomy: a prospective, observational study
Authors: Umaba Chinatsu , Mineharu Yohei , Liang Nan , Mizota Toshiyuki , Yamawaki Rie , Ueda Masaya , Yamao Yukihiro , Nankaku Manabu , Miyamoto Susumu , Matsuda Shuichi , Inadomi Hiroyuki , Arakawa Yoshiki
Published: January 2022

Awake craniotomy enables mapping and monitoring of brain functions. For successful procedures, rapid awakening and the precise evaluation of consciousness are required. A prospective, observational study conducted to test whether intraoperative hand strength could be a sensitive indicator of consciousness during the awake phase of awake craniotomy. Twenty-three patients who underwent awake craniotomy were included. Subtle changes of the level of consciousness were assessed by the Japan Coma Scale (JCS). The associations of hand strength on the unaffected side with the predicted plasma concentration (Cp) of propofol, the bispectral index (BIS), and the JCS were analyzed. Hand strength relative to the preoperative maximum hand strength on the unaffected side showed significant correlations with the Cp of propofol (ρ =  − 0.219, p = 0.007), the BIS (ρ = 0.259, p = 0.002), and the JCS (τ =  − 0.508, p = 0.001). Receiver operating characteristic curve analysis for discriminating JCS 0–1 and JCS ≥ 2 demonstrated that the area under the curve was 0.76 for hand strength, 0.78 for Cp of propofol, and 0.66 for BIS. With a cutoff value of 75% for hand strength, the sensitivity was 0.76, and the specificity was 0.67. These data demonstrated that hand strength is a useful indicator for assessing the intraoperative level of consciousness during awake craniotomy.
Distribution and history of extensional stresses on vWF surrogate molecules in turbulent flow
Authors: Pham Oanh L. , Feher Samuel E. , Nguyen Quoc T. , Papavassiliou Dimitrios V.
Published: January 2022

The configuration of proteins is critical for their biochemical behavior. Mechanical stresses that act on them can affect their behavior leading to the development of decease. The von Willebrand factor (vWF) protein circulating with the blood loses its efficacy when it undergoes non-physiological hemodynamic stresses. While often overlooked, extensional stresses can affect the structure of vWF at much lower stress levels than shear stresses. The statistical distribution of extensional stress as it applies on models of the vWF molecule within turbulent flow was examined here. The stress on the molecules of the protein was calculated with computations that utilized a Lagrangian approach for the determination of the molecule trajectories in the flow filed. The history of the stresses on the proteins was also calculated. Two different flow fields were considered as models of typical flows in cardiovascular mechanical devises, one was a Poiseuille flow and the other was a Poiseuille–Couette flow field. The data showed that the distribution of stresses is important for the design of blood flow devices because the average stress can be below the critical value for protein damage, but tails of the distribution can be outside the critical stress regime.
The discrepancy between fire ant recruitment to and performance on rodent carrion
Authors: Lin Constance , Tarone Aaron M. , Eubanks Micky D.
Published: January 2022

Ants have not been considered important in the process of vertebrate carrion decomposition, but a recent literature review reported over 150 carrion-visiting ant species. Though many ant species have been observed to remove carrion tissue and consume carrion-exuded liquids, the significance of ant recruitment to vertebrate carrion is poorly understood. We conducted a combination of field and laboratory experiments to quantify red imported fire ant recruitment to rodent carrion and determine whether consuming rodent carrion is beneficial to ant colony performance. In the field, 100% of rat carcasses were rapidly colonized by fire ants at high abundances. In our laboratory experiment, the performance of mice-fed fire ant colonies was poor when compared to colonies that were fed mice and insects or insects only. Our results suggest that there is a discrepancy between high levels of fire ant recruitment to vertebrate carrion and the poor colony performance when fed carrion. We hypothesize that fire ants are attracted to vertebrate carrion not because it is a high-quality food, but rather because it hosts large numbers of other invertebrates that can serve as prey for fire ants, potentially showcasing an interesting case of tritrophic interaction in carrion ecology.
Cortical diurnal rhythms remain intact with microglial depletion
Authors: Barahona Rocio A. , Morabito Samuel , Swarup Vivek , Green Kim N.
Published: January 2022

Microglia are subject to change in tandem with the endogenously generated biological oscillations known as our circadian rhythm. Studies have shown microglia harbor an intrinsic molecular clock which regulates diurnal changes in morphology and influences inflammatory responses. In the adult brain, microglia play an important role in the regulation of condensed extracellular matrix structures called perineuronal nets (PNNs), and it has been suggested that PNNs are also regulated in a circadian and diurnal manner. We sought to determine whether microglia mediate the diurnal regulation of PNNs via CSF1R inhibitor dependent microglial depletion in C57BL/6J mice, and how the absence of microglia might affect cortical diurnal gene expression rhythms. While we observe diurnal differences in microglial morphology, where microglia are most ramified at the onset of the dark phase, we do not find diurnal differences in PNN intensity. However, PNN intensity increases across many brain regions in the absence of microglia, supporting a role for microglia in the regulation of PNNs. Here, we also show that cortical diurnal gene expression rhythms are intact, with no cycling gene changes without microglia. These findings demonstrate a role for microglia in the maintenance of PNNs, but not in the maintenance of diurnal rhythms.
Unilateral zebrafish corneal injury induces bilateral cell plasticity supporting wound closure
Authors: Ikkala Kaisa , Stratoulias Vassilis , Michon Frederic
Published: January 2022

The cornea, transparent and outermost structure of camera-type eyes, is prone to environmental challenges, but has remarkable wound healing capabilities which enables to preserve vision. The manner in which cell plasticity impacts wound healing remains to be determined. In this study, we report rapid wound closure after zebrafish corneal epithelium abrasion. Furthermore, by investigating the cellular and molecular events taking place during corneal epithelial closure, we show the induction of a bilateral response to a unilateral wound. Our transcriptomic results, together with our TGF-beta receptor inhibition experiments, demonstrate conclusively the crucial role of TGF-beta signaling in corneal wound healing. Finally, our results on Pax6 expression and bilateral wound healing, demonstrate the decisive impact of epithelial cell plasticity on the pace of healing. Altogether, our study describes terminally differentiated cell competencies in the healing of an injured cornea. These findings will enhance the translation of research on cell plasticity to organ regeneration.
Experimental aortic aneurysm severity and growth depend on topical elastase concentration and lysyl oxidase inhibition
Authors: Berman Alycia G. , Romary Daniel J. , Kerr Katherine E. , Gorazd Natalyn E. , Wigand Morgan M. , Patnaik Sourav S. , Finol Ender A. , Cox Abigail D. , Goergen Craig J.
Published: January 2022

Abdominal aortic aneurysm (AAA) formation and expansion is highly complex and multifactorial, and the improvement of animal models is an important step to enhance our understanding of AAA pathophysiology. In this study, we explore our ability to influence aneurysm growth in a topical elastase plus β-Aminopropionitrile (BAPN) mouse model by varying elastase concentration and by altering the cross-linking capability of the tissue. To do so, we assess both chronic and acute effects of elastase concentration using volumetric ultrasound. Our results suggest that the applied elastase concentration affects initial elastin degradation, as well as long-term vessel expansion. Additionally, we assessed the effects of BAPN by (1) removing it to restore the cross-linking capability of tissue after aneurysm formation and (2) adding it to animals with stable aneurysms to interrupt cross-linking. These results demonstrate that, even after aneurysm formation, lysyl oxidase inhibition remains necessary for continued expansion. Removing BAPN reduces the aneurysm growth rate to near zero, resulting in a stable aneurysm. In contrast, adding BAPN causes a stable aneurysm to expand. Altogether, these results demonstrate the ability of elastase concentration and BAPN to modulate aneurysm growth rate and severity. The findings open several new areas of investigation in a murine model that mimics many aspects of human AAA.
Development of high slip-resistant footwear outsole using rubber surface filled with activated carbon/sodium chloride
Authors: Nishi Toshiaki , Yamaguchi Takeshi , Hokkirigawa Kazuo
Published: January 2022

High slip-resistant footwear outsoles can reduce the risk of slip and fall on wet and icy surfaces. Falls on wet and icy surfaces can cause serious life-threatening injuries, especially for older adults. Here we show that footwear outsoles using the rubbers filled with activated carbon or sodium chloride produce higher friction force and reduce the slip rate in walking. We have identified that small depressions were formed on outsole materials filled with activated carbon or sodium chloride during friction between the rubber and surface leading to some air ingress into the interface. While there are air bubbles between the rubber and surface, real contacts are surrounded by water with negative pressure (Laplace pressure). It is considered that the negative pressure promotes real contact formation, which causes high friction. We consider that the outsole materials filled with activated carbon or sodium chloride can reduce the risk of slip-and-fall accidents.
Cholinergic anti-inflammatory pathway ameliorates murine experimental Th2-type colitis by suppressing the migration of plasmacytoid dendritic cells
Authors: Kanauchi Yuya , Yamamoto Takeshi , Yoshida Minako , Zhang Yue , Lee Jaemin , Hayashi Shusaku , Kadowaki Makoto
Published: January 2022

Ulcerative colitis (UC) is a chronic inflammatory bowel disease. Several studies have demonstrated that α7 nicotinic acetylcholine receptors (α7nAChRs) exert anti-inflammatory effects on immune cells and nicotine suppress UC onset and relapse. Plasmacytoid dendritic cells (pDCs) reportedly accumulate in the colon of UC patients. Therefore, we investigated the pathophysiological roles of α7nAChRs on pDCs in the pathology of UC using oxazolone (OXZ)-induced Th2-type colitis with BALB/c mice. 2-deoxy-D-glucose, a central vagal stimulant suppressed OXZ colitis, and nicotine also ameliorated OXZ colitis with suppressing Th2 cytokines, which was reversed by α7nAChR antagonist methyllycaconitine. Additionally, α7nAChRs were expressed on pDCs, which were located very close to cholinergic nerve fibers in the colon of OXZ mice. Furthermore, nicotine suppressed CCL21-induced bone marrow-derived pDC migration due to Rac 1 inactivation, which was reversed by methyllycaconitine, a JAK2 inhibitor AG490 or caspase-3 inhibitor AZ-10417808. CCL21 was mainly expressed in the isolated lymphoid follicles (ILFs) of the colon during OXZ colitis. The therapeutic effect of cholinergic pathway on OXZ colitis probably through α7nAChRs on pDCs were attributed to the suppression of pDC migration toward the ILFs. Therefore, the activation of α7nAChRs has innovative therapeutic potential for the treatment of UC.
Device quantization policy in variation-aware in-memory computing design
Authors: Chang Chih-Cheng , Li Shao-Tzu , Pan Tong-Lin , Tsai Chia-Ming , Wang I-Ting , Chang Tian-Sheuan , Hou Tuo-Hung
Published: January 2022

Device quantization of in-memory computing (IMC) that considers the non-negligible variation and finite dynamic range of practical memory technology is investigated, aiming for quantitatively co-optimizing system performance on accuracy, power, and area. Architecture- and algorithm-level solutions are taken into consideration. Weight-separate mapping, VGG-like algorithm, multiple cells per weight, and fine-tuning of the classifier layer are effective for suppressing inference accuracy loss due to variation and allow for the lowest possible weight precision to improve area and energy efficiency. Higher priority should be given to developing low-conductance and low-variability memory devices that are essential for energy and area-efficiency IMC whereas low bit precision (< 3b) and memory window (< 10) are less concerned.
Correlative imaging of ferroelectric domain walls
Authors: Gaponenko Iaroslav , Cherifi-Hertel Salia , Acevedo-Salas Ulises , Bassiri-Gharb Nazanin , Paruch Patrycja
Published: January 2022

The wealth of properties in functional materials at the nanoscale has attracted tremendous interest over the last decades, spurring the development of ever more precise and ingenious characterization techniques. In ferroelectrics, for instance, scanning probe microscopy based techniques have been used in conjunction with advanced optical methods to probe the structure and properties of nanoscale domain walls, revealing complex behaviours such as chirality, electronic conduction or localised modulation of mechanical response. However, due to the different nature of the characterization methods, only limited and indirect correlation has been achieved between them, even when the same spatial areas were probed. Here, we propose a fast and unbiased analysis method for heterogeneous spatial data sets, enabling quantitative correlative multi-technique studies of functional materials. The method, based on a combination of data stacking, distortion correction, and machine learning, enables a precise mesoscale analysis. When applied to a data set containing scanning probe microscopy piezoresponse and second harmonic generation polarimetry measurements, our workflow reveals behaviours that could not be seen by usual manual analysis, and the origin of which is only explainable by using the quantitative correlation between the two data sets.
BDNF Val66Met gene polymorphism modulates brain activity following rTMS-induced memory impairment
Authors: Abellaneda-Pérez Kilian , Martin-Trias Pablo , Cassé-Perrot Catherine , Vaqué-Alcázar Lídia , Lanteaume Laura , Solana Elisabeth , Babiloni Claudio , Lizio Roberta , Junqué Carme , Bargalló Núria , Rossini Paolo Maria , Micallef Joëlle , Truillet Romain , Charles Estelle , Jouve Elisabeth , Bordet Régis , Santamaria Joan , Rossi Simone , Pascual-Leone Alvaro , Blin Olivier , Richardson Jill , Jovicich Jorge , Bartrés-Faz David
Published: January 2022

The BDNF Val66Met gene polymorphism is a relevant factor explaining inter-individual differences to TMS responses in studies of the motor system. However, whether this variant also contributes to TMS-induced memory effects, as well as their underlying brain mechanisms, remains unexplored. In this investigation, we applied rTMS during encoding of a visual memory task either over the left frontal cortex (LFC; experimental condition) or the cranial vertex (control condition). Subsequently, individuals underwent a recognition memory phase during a functional MRI acquisition. We included 43 young volunteers and classified them as 19 Met allele carriers and 24 as Val/Val individuals. The results revealed that rTMS delivered over LFC compared to vertex stimulation resulted in reduced memory performance only amongst Val/Val allele carriers. This genetic group also exhibited greater fMRI brain activity during memory recognition, mainly over frontal regions, which was positively associated with cognitive performance. We concluded that BDNF Val66Met gene polymorphism, known to exert a significant effect on neuroplasticity, modulates the impact of rTMS both at the cognitive as well as at the associated brain networks expression levels. This data provides new insights on the brain mechanisms explaining cognitive inter-individual differences to TMS, and may inform future, more individually-tailored rTMS interventions.
Spherical harmonics to quantify cranial asymmetry in deformational plagiocephaly
Authors: Grieb Jonas , Barbero-García Inés , Lerma José Luis
Published: January 2022

Cranial deformation and deformational plagiocephaly (DP) in particular affect an important percentage of infants. The assessment and diagnosis of the deformation are commonly carried by manual measurements that provide low interuser accuracy. Another approach is the use of three-dimensional (3D) models. Nevertheless, in most cases, deformation measurements are carried out manually on the 3D model. It is necessary to develop methodologies for the detection of DP that are automatic, accurate and take profit on the high quantity of information of the 3D models. Spherical harmonics are proposed as a new methodology to identify DP from head 3D models. The ideal fitted ellipsoid for each head is computed and the orthogonal distances between head and ellipsoid are obtained. Finally, the distances are modelled using spherical harmonics. Spherical harmonic coefficients of degree 2 and order − 2 are identified as the correct ones to represent the asymmetry characteristic of DP. The obtained coefficient is compared to other anthropometric deformation indexes, such as Asymmetry Index, Oblique Cranial Length Ratio, Posterior Asymmetry Index and Anterior Asymmetry Index. The coefficient of degree 2 and order − 2 with a maximum degree of 4 is found to provide better results than the commonly computed anthropometric indexes in the detection of DP.
Spatial and temporal variation of the ambient noise environment of the Sikkim Himalaya
Authors: Uthaman Mita , Singh Chandrani , Singh Arun , Jana Niptika , Dubey Arun Kumar , Sarkar Sukanta , Tiwari Ashwani Kant
Published: January 2022

Ambient noise characteristics are perused to assess the station performance of 27 newly constructed broadband seismic stations across Sikkim Himalaya and adjoining Himalayan foreland basin, installed to study the seismogenesis and subsurface structure of the region. Power spectral densities obtained at each station, compared against the global noise limits, reveal that observed vertical component noise levels are within the defined global limits. However, the horizontal components marginally overshoot the limits due to the tilt effect. Ambient noise conditions significantly vary with different installation techniques, analysis revealing that seismic sensors buried directly in the ground have reduced long-period noise in comparison to pier installations. Tectonic settings and anthropogenic activities are also noted to cause a significant rise across short-period and microseism noise spectrum, varying spatially and temporally across the region. Day-time records higher cultural noise than night-time, while the microseism noise dominates during the monsoonal season. An assessment of the effect of the nationwide lockdown imposed due to COVID-19 pandemic revealed a significant decrease in the short-period noise levels at stations installed across the foreland basin marked with higher anthropogenic activity. Our study summarizes the overall ambient noise patterns, validating the stability and performance of the seismic stations across the Sikkim Himalayas.
Correlation between gene expression and MRI STIR signals in patients with chronic low back pain and Modic changes indicates immune involvement
Authors: Vigeland Maria Dehli , Flåm Siri Tennebø , Vigeland Magnus Dehli , Espeland Ansgar , Kristoffersen Per Martin , Vetti Nils , Wigemyr Monica , Bråten Lars Christian Haugli , Gjefsen Elisabeth , Schistad Elina Iordanova , Haugen Anne Julsrud , Froholdt Anne , Skouen Jan Sture , Zwart John-Anker , Storheim Kjersti , Pedersen Linda Margareth , Lie Benedicte Alexandra ,   the AIM Study Group, Anke Audny , Winsvold Bendik Slagsvold , Lurud Britt Elin , Hellum Christian , Andersen Erling , Granvigen Fredrik , Marchand Gunn Hege , Kjos Guro , Andersen Hege , Presberg Hilde , Østhus Ida Beate , Brox Jens Ivar , Aßmus Jörg , Gammelsrud Karianne Wiger , Huneide Knut Morten , Grøvle Lars , Rolfsen Mads Peder , Wilhelmsen Maja , Grotle Margreth , Thorsø Marianne , Lutro Olav , Nygaard Øystein Petter , Randen Sigrun , Claussen Siv Krüger , Fors Terese , Kadar Thomas Istvan , Holmgard Thor Einar , Sørensen Veronica , Rao Vidar
Published: January 2022

Disability and distress caused by chronic low back pain (LBP) lacking clear pathoanatomical explanations cause huge problems both for patients and society. A subgroup of patients has Modic changes (MC), identifiable by MRI as vertebral bone marrow lesions. The cause of such changes and their relationship to pain are not yet understood. We explored the pathobiology of these lesions using profiling of gene expression in blood, coupled with an edema-sensitive MRI technique known as short tau inversion recovery (STIR) imaging. STIR images and total RNA from blood were collected from 96 patients with chronic LBP and MC type I, the most inflammatory MC state. We found the expression of 37 genes significantly associated with STIR signal volume, ten genes with edema abundancy (a constructed combination of STIR signal volume, height, and intensity), and one gene with expression levels significantly associated with maximum STIR signal intensity. Gene sets related to interferon signaling, mitochondrial metabolism and defense response to virus were identified as significantly enriched among the upregulated genes in all three analyses. Our results point to inflammation and immunological defense as important players in MC biology in patients with chronic LBP.
Population differences and domestication effects on mating and remating frequencies in Queensland fruit fly
Authors: Ahmed Khandaker Asif , Yeap Heng Lin , Pandey Gunjan , Lee Siu Fai , Taylor Phillip W. , Oakeshott John G.
Published: January 2022

Females of many insect species are unreceptive to remating for a period following their first mating. This inhibitory effect may be mediated by either the female or her first mate, or both, and often reflects the complex interplay of reproductive strategies between the sexes. Natural variation in remating inhibition and how this phenotype responds to captive breeding are largely unexplored in insects, including many pest species. We investigated genetic variation in remating propensity in the Queensland fruit fly,Bactrocera tryoni, using strains differing in source locality and degree of domestication. We found up to threefold inherited variation between strains from different localities in the level of intra-strain remating inhibition. The level of inhibition also declined significantly during domestication, which implied the existence of genetic variation for this trait within the starting populations as well. Inter-strain mating and remating trials showed that the strain differences were mainly due to the genotypes of the female and, to a lesser extent, the second male, with little effect of the initial male genotype. Implications for our understanding of fruit fly reproductive biology and population genetics and the design of Sterile Insect Technique pest management programs are discussed.
Meta-analysis of whole-genome gene expression datasets assessing the effects of IDH1 and IDH2 mutations in isogenic disease models
Authors: Schulten Hans-Juergen , Al-Adwani Fatima , Saddeq Haneen A. Bin , Alkhatabi Heba , Alganmi Nofe , Karim Sajjad , Hussein Deema , Al-Ghamdi Khalid B. , Jamal Awatif , Al-Maghrabi Jaudah , Al-Qahtani Mohammed H.
Published: January 2022

Mutations in isocitrate dehydrogenase 1 (IDH1) and IDH2 are oncogenic drivers to a variable extent in several tumors, including gliomas, acute myeloid leukemia (AML), cholangiocarcinoma, melanoma, and thyroid carcinoma. The pathobiological effects of these mutations vary considerably, impeding the identification of common expression profiles. We performed an expression meta-analysis between IDH-mutant (IDHmut) and IDH-wild-type (IDHwt) conditions in six human and mouse isogenic disease models. The datasets included colon cancer cells, glioma cells, heart tissue, hepatoblasts, and neural stem cells. Among differentially expressed genes (DEGs), serine protease 23 (PRSS23) was upregulated in four datasets, i.e., in human colon carcinoma cells, mouse heart tissue, mouse neural stem cells, and human glioma cells. Carbonic anhydrase 2 (CA2) and prolyl 3-hydroxylase 2 (P3H2) were upregulated in three datasets, and SOX2 overlapping transcript (SOX2-OT) was downregulated in three datasets. The most significantly overrepresented protein class was termed intercellular signal molecules. An additional DEG set contained genes that were both up- and downregulated in different datasets and included oxidases and extracellular matrix structural proteins as the most significantly overrepresented protein classes. In conclusion, this meta-analysis provides a comprehensive overview of the expression effects of IDH mutations shared between different isogenic disease models. The generated dataset includes biomarkers, e.g., PRSS23 that may gain relevance for further research or clinical applications in IDHmut tumors.
Sensory and motor electrophysiological mapping of the cerebellum in humans
Authors: Ashida Reiko , Walsh Peter , Brooks Jonathan C. W. , Cerminara Nadia L. , Apps Richard , Edwards Richard J.
Published: January 2022

Cerebellar damage during posterior fossa surgery in children can lead to ataxia and risk of cerebellar mutism syndrome. Compartmentalisation of sensorimotor and cognitive functions within the cerebellum have been demonstrated in animal electrophysiology and human imaging studies. Electrophysiological monitoring was carried out under general anaesthesia to assess the limb sensorimotor representation within the human cerebellum for assessment of neurophysiological integrity to reduce the incidence of surgical morbidities. Thirteen adult and paediatric patients undergoing posterior fossa surgery were recruited. Sensory evoked field potentials were recorded in response to mapping (n = 8) to electrical stimulation of limb nerves or muscles. For motor mapping (n = 5), electrical stimulation was applied to the surface of the cerebellum and evoked EMG responses were sought in facial and limb muscles. Sensory evoked potentials were found in two patients (25%). Responses were located on the surface of the right inferior posterior cerebellum to stimulation of the right leg in one patient, and on the left inferior posterior lobe in another patient to stimulation of left forearm. No evoked EMG responses were found for the motor mapping. The present study identifies challenges with using neurophysiological methods to map functional organization within the human cerebellum and considers ways to improve success.
Conventional dose versus dose escalated radiotherapy including high-dose-rate brachytherapy boost for patients with Gleason score 9–10 clinical localized prostate cancer
Authors: Yamazaki Hideya , Suzuki Gen , Aibe Norihiro , Shimizu Daisuke , Kimoto Takuya , Masui Koji , Yoshida Ken , Nakamura Satoaki , Okabe Haruumi
Published: January 2022

As several recent researches focus on the importance of Gleason 9–10, we examine the role of radiotherapy dose escalation in those patients. We analyzed 476 patients with Gleason score 9–10 prostate cancer treated with radiotherapy. Of them, 127 patients were treated with conventional-dose external beam radiotherapy (Conv RT) and 349 patients were treated with high-dose radiotherapy (HDRT; 249 patients received high-dose-rate brachytherapy boost + external beam radiotherapy [HDR boost] and 100 patients received intensity-modulated radiotherapy [IMRT]). We compared these treatment groups using multi-institutional retrospective data. The patients had a median follow-up period of 66.3 months. HDRT showed superior biochemical disease-free survival (bDFS) rate (85.2%; HDR boost 84.7% and IMRT 86.6%) to Conv RT (71.1%,p < 0.0001) at 5 years, with a hazard ratio of 0.448. There were borderline difference in prostate cancer-specific mortality (PCSM; 4.3% and 2.75%,p = 0.0581), and distant metastasis-free survival (DMFS; 94.4% and 89.6%,p = 0.0916) rates at 5-years between Conv RT and HDRT group. Dose escalated radiotherapy showed better bDFS, borderline improvement in PCSM, and equivocal outcome in DMFS in with clinically localized Gleason 9–10 prostate cancer.
Use of a language intervention to reduce vaccine hesitancy
Authors: Geipel Janet , Grant Leigh H. , Keysar Boaz
Published: January 2022

Vaccine hesitancy is a major global challenge facing COVID-19 immunization programs. Its main source is low public trust in the safety and effectiveness of the vaccine. In a preregistered experimental study, we investigated how using a foreign language when communicating COVID-19 vaccine information influences vaccine acceptance. Hong Kong Chinese residents (N = 611) received COVID-19 vaccine information either in their native Chinese or in English. English increased trust in the safety and effectiveness of the vaccine and, as a result, reduced vaccine hesitancy. This indicates that language can impact vaccine attitudes and demonstrate the potential of language interventions for a low cost, actionable strategy to curtail vaccine hesitancy amongst bilingual populations. Language interventions could contribute towards achieving the United Nations Sustainable Development Goal of health and well-being.
Humans depart from optimal computational models of interactive decision-making during competition under partial information
Authors: Steixner-Kumar Saurabh , Rusch Tessa , Doshi Prashant , Spezio Michael , Gläscher Jan
Published: January 2022

Decision making under uncertainty in multiagent settings is of increasing interest in decision science. The degree to which human agents depart from computationally optimal solutions in socially interactive settings is generally unknown. Such understanding provides insight into how social contexts affect human interaction and the underlying contributions of Theory of Mind. In this paper, we adapt the well-known ‘Tiger Problem’ from artificial-agent research to human participants in solo and interactive settings. Compared to computationally optimal solutions, participants gathered less information before outcome-related decisions when competing than cooperating with others. These departures from optimality were not haphazard but showed evidence of improved performance through learning. Costly errors emerged under conditions of competition, yielding both lower rates of rewarding actions and accuracy in predicting others. Taken together, this work provides a novel approach and insights into studying human social interaction when shared information is partial.
Two-year quality of life after robot-assisted radical prostatectomy according to pentafecta criteria and cancer of the prostate risk assessment (CAPRA-S)
Authors: Karagiotis Theodoros , Witt Jorn H. , Jankowski Thomas , Mendrek Mikolaj , Wagner Christian , Schuette Andreas , Liakos Nikolaos , Rachubinski Pawel , Urbanova Katarina , Oelke Matthias , Kachanov Mykyta , Leyh-Bannurah Sami-Ramzi
Published: January 2022

The quality of life (QoL) of men with optimal outcomes after robot-assisted radical prostatectomy (RARP) is largely unexplored. Thus we assessed meaningful changes of QoL measured with the EORTC QLQ-C30 24 months after RARP according to postsurgical Cancer of the Prostate Risk Assessment score (CAPRA-S) and pentafecta criteria. 2871 prostate cancer (PCa) patients with completed EORTC QLQ-C30 were stratified according to CAPRA-S, pentafecta (erectile function recovery, urinary continence recovery, biochemical-recurrence-free survival (BFS), negative surgical margins) and 90-day Clavien–Dindo-complications (CDC) ≤ 3a. Multivariable logistic regression analyses (LRM) aimed to predict improvement of EORTC QoL. Mean preoperative QoL values did not significantly differ between CAPRA-S low- (LR) vs. high-risk (HR, 75.7 vs. 75.2; p = 0.7) and pentafecta vs. non-pentafecta groups (75.6 vs. 75.2; p = 0.6). After RARP, stable QoL rates for CAPRA-S LR vs. HR and pentafecta were 30, 26 and 30%, respectively. Corresponding improved QoL rates were 44, 32 and 47%. In LRM, CAPRA-S and pentafecta criteria were independent predictors of improved QoL. We conclude that most favourable combined outcomes after RARP might confer stable or even improved QoL but up to one third of patients might experience deterioration. This warrants further investigation how to capture the underlying cause and to address and potentially solve these perceived negative effects despite successful RARP.
Association of perceived stress and coping strategies with the renal function in middle-aged and older Japanese men and women
Authors: Koga Kayoko , Hara Megumi , Shimanoe Chisato , Nishida Yuichiro , Furukawa Takuma , Iwasaka Chiharu , Tanaka Keitaro , Otonari Jun , Ikezaki Hiroaki , Kubo Yoko , Kato Yasufumi , Tamura Takashi , Hishida Asahi , Matsuo Keitaro , Ito Hidemi , Nakamura Yohko , Kusakabe Miho , Nishimoto Daisaku , Shibuya Keiichi , Suzuki Sadao , Watanabe Miki , Ozaki Etsuko , Matsui Daisuke , Kuriki Kiyonori , Takashima Naoyuki , Kadota Aya , Arisawa Kokichi , Katsuura-Kamano Sakurako , Takeuchi Kenji , Wakai Kenji
Published: January 2022

Elucidating the risk factors for chronic kidney disease is important for preventing end-stage renal disease and reducing mortality. However, little is known about the roles of psychosocial stress and stress coping behaviors in deterioration of the renal function, as measured by the estimated glomerular filtration rate (eGFR). This cross-sectional study of middle-aged and older Japanese men (n = 31,703) and women (n = 38,939) investigated whether perceived stress and coping strategies (emotional expression, emotional support seeking, positive reappraisal, problem solving, and disengagement) were related to the eGFR, with mutual interactions. In multiple linear regression analyses adjusted for age, area, lifestyle factors, and psychosocial variables, we found a significant inverse association between perceived stress and the eGFR in men (Ptrend = 0.02), but not women. This male-specific inverse association was slightly attenuated after adjustment for the history of hypertension and diabetes and was more evident in lower levels of emotional expression (Pinteraction = 0.003). Unexpectedly, problem solving in men (Ptrend < 0.001) and positive reappraisal in women (Ptrend = 0.002) also showed an inverse association with the eGFR. Perceived stress may affect the eGFR, partly through the development of hypertension and diabetes. The unexpected findings regarding coping strategies require the clarification of the underlying mechanisms, including the hormonal and immunological aspects.
Qualitative and quantitative methods detection of SDS based on polyelectrolyte microcapsules
Authors: Kim Aleksandr L. , Musin Egor V. , Dubrovskii Alexey V. , Tikhonenko Sergey A.
Published: January 2022

Sodium dodecyl sulfate (SDS) is the most widely used anionic surfactant. Its frequent use causes environmental pollution and negative effects on living organisms (even at low concentrations ≈ 20 μg/ml). Thus, cheap and fast methods are needed to detect this surfactant in wastewater and surface waters in order to prevent the negative effects of SDS on the environment and human beings. We discovered that sodium dodecyl sulfate is capable of destroying polyelectrolyte microcapsules, which has been demonstrated by the number of sedimented polyelectrolyte microcapsules (PMC) before and after incubation in SDS solution. Therefore, it was proposed to use PMCs to create qualitative and quantitative diagnostic systems for the determination of SDS in solution. The qualitative system is a polyelectrolyte microcapsules containing polyallylamine labeled with a fluorescent dye—FITC. An excess SDS concentration of more than 5 μg/ml in the analyzed medium leads to the destruction of PMC and an increase in the fluorescence intensity of the solution, which is recorded by a fluorometer. The quantitative diagnostic system is based on turbidimetry of the PMC suspension before and after incubation in an anionic surfactant solution. This system has a range of detectable SDS concentrations from 10 to 50 μg/ml, with a standard deviation of no more than 11%.
Automated segmentation of articular disc of the temporomandibular joint on magnetic resonance images using deep learning
Authors: Ito Shota , Mine Yuichi , Yoshimi Yuki , Takeda Saori , Tanaka Akari , Onishi Azusa , Peng Tzu-Yu , Nakamoto Takashi , Nagasaki Toshikazu , Kakimoto Naoya , Murayama Takeshi , Tanimoto Kotaro
Published: January 2022

Temporomandibular disorders are typically accompanied by a number of clinical manifestations that involve pain and dysfunction of the masticatory muscles and temporomandibular joint. The most important subgroup of articular abnormalities in patients with temporomandibular disorders includes patients with different forms of articular disc displacement and deformation. Here, we propose a fully automated articular disc detection and segmentation system to support the diagnosis of temporomandibular disorder on magnetic resonance imaging. This system uses deep learning-based semantic segmentation approaches. The study included a total of 217 magnetic resonance images from 10 patients with anterior displacement of the articular disc and 10 healthy control subjects with normal articular discs. These images were used to evaluate three deep learning-based semantic segmentation approaches: our proposed convolutional neural network encoder-decoder named 3DiscNet (Detection for Displaced articular DISC using convolutional neural NETwork), U-Net, and SegNet-Basic. Of the three algorithms, 3DiscNet and SegNet-Basic showed comparably good metrics (Dice coefficient, sensitivity, and positive predictive value). This study provides a proof-of-concept for a fully automated deep learning-based segmentation methodology for articular discs on magnetic resonance images, and obtained promising initial results, indicating that the method could potentially be used in clinical practice for the assessment of temporomandibular disorders.
Ethanol reduces the minimum alveolar concentration of sevoflurane in rats
Authors: Müller Johannes , Plöchl Walter , Mühlbacher Paul , Graf Alexandra , Kramer Anne-Margarethe , Podesser Bruno Karl , Stimpfl Thomas , Hamp Thomas
Published: January 2022

A high number of trauma patients are under the influence of alcohol. Since many of them need immediate surgical procedures, it is imperative to be aware of the interaction of alcohol with general anesthesia. To counter challenges that arise from clinical studies, we designed an animal experiment in which 48 adult Wistar rats either received 1 g · kg−1 ethanol, 2 g · kg−1 ethanol or placebo via intraperitoneal application. Subsequently, they were anesthetized with an individual concentration of sevoflurane. The minimum alveolar concentration (MAC) of the different groups was assessed using Dixon’s up-and-down design and isotonic regression methods. The bootstrap estimate of the MAC of sevoflurane in the placebo group was 2.24 vol% (95% CI 1.97–2.94 vol%). In the low dose ethanol group, the bootstrap estimate was 1.65 vol% (95% CI 1.40–1.98 vol%), and in the high dose ethanol group, it was 1.08 vol% (95% CI 0.73–1.42 vol%). We therefore report that intraperitoneal application of 1 g · kg−1 or 2 g · kg−1 ethanol both resulted in a significant reduction of the MAC of sevoflurane in adult Wistar rats: by 26.3% and 51.8% respectively as compared to placebo.
Analysis of postures for handwriting on touch screens without using tools
Authors: Marullo Sara , Pozzi Maria , Malvezzi Monica , Prattichizzo Domenico
Published: January 2022

The act of handwriting affected the evolutionary development of humans and still impacts the motor cognition of individuals. However, the ubiquitous use of digital technologies has drastically decreased the number of times we really need to pick a pen up and write on paper. Nonetheless, the positive cognitive impact of handwriting is widely recognized, and a possible way to merge the benefits of handwriting and digital writing is to use suitable tools to write over touchscreens or graphics tablets. In this manuscript, we focus on the possibility of using the hand itself as a writing tool. A novel hand posture named FingerPen is introduced, and can be seen as a grasp performed by the hand on the index finger. A comparison with the most common posture that people tend to assume (i.e. index finger-only exploitation) is carried out by means of a biomechanical model. A conducted user study shows that the FingerPen is appreciated by users and leads to accurate writing traits.
Population-based survival for cancer patients in Saudi Arabia for the years 2005–2009
Authors: Aseafan Mohamed , Devol Edward , AlAhwal Mahmoud , Souissi Riad , Sindi Reham , AlEid Haya , Bazarbashi Shouki
Published: January 2022

The Saudi Cancer Registry reported in 2007 the 5-year observed survival for the most common cancer sites for the years 1994–2004. In this report we looked at the cancer survival in the period 2005–2009 and evaluated the trend over the 15 years period from 1994 to 2009. Cases of the top 14 cancer sites reported by the population based Saudi Cancer Registry from 1 January 2005 to December 31, 2009, were submitted for survival analysis. The vital status of those patients was collected. Analysis of survival for the above period was compared with the prior reported 2 periods (1994–1999, 2000–2004). In addition, analysis was done according to age, sex, disease stage and the province. Data of 25,969 patients of the commonest cancer sites were submitted. Of those 14,146 patients (54%) had complete demographic data available and vital status was reported. Thyroid cancer had the highest 5- year observed survival of 94% (95% confidence interval (CI) 93–95%)), followed by Breast (72%, 95% CI 71–74%). In hematological malignancies, Hodgkin’s Lymphoma had the highest 5-year survival of 86% (95% CI 84–88%). Survival rates has improved in most of the cancers sites for the studied periods except for lung, uterine and Hodgkin’s lymphoma which plateaued. Our study confirms a steady improvement in the 5-year observed survival over time for the majority of cancers. Our survival data were comparable to western countries. This data should be used by policy makers to improve on cancer care in the kingdom.
Stage specific comparative transcriptomic analysis to reveal gene networks regulating iron and zinc content in pearl millet [Pennisetum glaucum (L.) R. Br.]
Authors: Satyavathi C. Tara , Tomar Rukam S. , Ambawat Supriya , Kheni Jasminkumar , Padhiyar Shital M. , Desai Hiralben , Bhatt S. B. , Shitap M. S. , Meena Ramesh Chand , Singhal Tripti , Sankar S. Mukesh , Singh S. P. , Khandelwal Vikas
Published: January 2022

Pearl millet is an important staple food crop of poor people and excels all other cereals due to its unique features of resilience to adverse climatic conditions. It is rich in micronutrients like iron and zinc and amenable for focused breeding for these micronutrients along with high yield. Hence, this is a key to alleviate malnutrition and ensure nutritional security. This study was conducted to identify and validate candidate genes governing grain iron and zinc content enabling the desired modifications in the genotypes. Transcriptome sequencing using ION S5 Next Generation Sequencer generated 43.5 million sequence reads resulting in 83,721 transcripts with N50 of 597 bp and 84.35% of transcripts matched with the pearl millet genome assembly. The genotypes having high iron and zinc showed differential gene expression during different stages. Of which, 155 were up-regulated and 251 were down-regulated while during flowering stage and milking stage 349 and 378 transcripts were differentially expressed, respectively. Gene annotation and GO term showed the presence of transcripts involved in metabolic activities associated with uptake and transport of iron and zinc. Information generated will help in gaining insights into iron and zinc metabolism and develop genotypes with high yield, grain iron and zinc content.