bluuebunny/crossref_metadata_2025 huggingface dataset:
Spatial patterns of reef fishes and corals in the thermally extreme waters of Qatar
Authors: Bouwmeester Jessica , Ben-Hamadou Radhouane , Range Pedro , Al Jamali Fahad , Burt John A.
Published: September 2022

The Persian Gulf is a thermally extreme environment in which reef corals have adapted to survive through temperature ranges that would be lethal to corals from other regions. Despite offering a unique opportunity to better understand how corals from other regions may adapt in the future, through a changing climate, much of the Gulf coral and fish communities remain to be described. In the southwestern Gulf nation of Qatar few reef sites have been described to date. We here characterize reef communities from 16 sites around the Qatar Peninsula, encompassing depths from 3 to 25m. We found the healthiest coral reef communities to be in deeper offshore reefs, with high coral and fish species richness and high coral abundance, likely a result of their occurrence below summer thermocline depths and distance from urban pressures. In contrast, we found shallow reefs, both nearshore and offshore, to have low species richness and abundance relative to deeper reefs, presumably due to impacts from recurrent bleaching events and development pressures over recent decades. The results of this work underscore the Qatar Peninsula as being at the biogeographic epicenter of the wider Gulf. However, further temperature increases may push both fishes and corals over their physiological limits. Management efforts at both the regional and global level are needed to reduce thermal stressors and preserve the rich reef ecosystems found in the waters surrounding Qatar.
Post-harvest cultivation with seafood process waters improves protein levels of Ulva fenestrata while retaining important food sensory attributes
Authors: Stedt Kristoffer , Steinhagen Sophie , Trigo João P. , Kollander Barbro , Undeland Ingrid , Toth Gunilla B. , Wendin Karin , Pavia Henrik
Published: September 2022

Seaweed aquaculture can provide the growing human population with a sustainable source of proteins. Sea-based cultivation is an effective method for farming seaweeds on a large scale and can yield high biomass output. However, the quality and biochemical composition of the biomass is seasonally dependent, which limits the harvests to certain periods of the year. Here we show the possibility to extend the sea-based cultivation season of Ulva fenestrata when aiming for high protein levels, by post-harvest treatment in herring production process waters. We harvested U. fenestrata at an optimal period in terms of yield, but suboptimal in terms of protein content. We then cultivated the seaweed in onshore tank systems with the nutrient-rich process waters for 14 days. We monitored biomass yield, crude protein content, amino acid composition, and content of the health concerning metals arsenic, mercury, lead, and cadmium, as well as the sensory properties of the dried biomass. After cultivation in the process waters, biomass yields were 30 - 40% higher (210 – 230 g fresh weight) compared to in seawater (160 g fresh weight). Also, the crude protein and amino acid content increased three to five times in the process waters, reaching 12 - 17 and 15 – 21% dry weight, respectively. The protein enriched biomass followed food graded standards for heavy metal content, and consumption of the biomass does not exceed health based reference points. Additionally, no sensory attributes regarded as negative were found. This rapid, post-harvest treatment can help extend the cultivation season of sea-based seaweed farms, maximizing their output of sustainable proteins.
Forced vibration analysis of inhomogeneous quasicrystal coating in a thermal environment
Authors: Feng Xin , Zhang Liangliang , Zhu Zhaowei , Li Yang , Gao Yang
Published: September 2022

The tremendous attention of researchers has been attracted to the unusual properties of quasicrystals in coatings. In this paper, the exact solutions of the functionally graded multilayered two-dimensional quasicrystal coating structures in a thermal environment are derived for advanced boundary-value problems with mixed boundary conditions. The state space method is formulated to the thermal coupling with quasicrystal linear elastic theory that derives the state equations for functionally graded quasicrystal coating structures along the thickness direction. The mixed supported boundary conditions in the x-direction and the simply supported boundary conditions in the y-direction are subjected to time-harmonic temperature loadings, which are represented by means of the differential quadrature technique and Fourier series expansions, respectively. Traction on both the bottom and top surfaces is free, and perfect thermal and mechanical contacts between constituents are incorporated at the internal interfaces. A global propagator matrix, which connects the field variables at the top interface to those at the bottom interface for the whole coating structure, is further completed by joint coupling matrices to overcome the numerical instabilities. Finally, three application examples are proposed to throw light on various effects of the power law index, frequency, and different boundary conditions on the field variables in three-layer coating structures. The present solution can serve as a benchmark for the modeling of functionally graded quasicrystal coating structures based on various numerical methods.
Understanding efficacy-safety balance of biologics in moderate-to-severe pediatric psoriasis
Authors: Golhen Klervi , Winskill Carolyn , Theiler Martin , Buettcher Michael , Yeh Yu-Hsin , Zhang Nancy , Welzel Tatjana , Pfister Marc
Published: September 2022

Background

Psoriasis is a chronic immune-mediated inflammatory skin disease affecting both adults and children. To better understand the efficacy-safety profile of biologics in children with moderate-to-severe psoriasis, this study aimed to analyze efficacy and safety data of randomized controlled trials (RCTs) performed in pediatric psoriasis and to compare efficacy outcomes in children with those in adults.

Methods

RCTs investigating biologics in children with moderate-to-severe psoriasis were identified in a systematic literature review. PASI75/90 treatment responses at weeks 11/12 were analyzed comparing biologics with control arms. Serious adverse events (SAEs) were analyzed at the end of each study. Efficacy data from RCTs in adults with psoriasis were selected for the same biologics. Risk ratios (RR) of selected RCTs were pooled together in a statistical random effects model using the inverse variance method.

Results

For children, there were 1 etanercept, 2 secukinumab, 1 ixekizumab and 1 ustekinumab placebo-controlled RCTs and 1 adalimumab RCT using methotrexate as reference arm at weeks 11/12. For adults, out of 263 RCTs, 7 adalimumab and 15 etanercept (TNF inhibitors) and 4 ixekizumab and 12 ustekinumab (IL-17 and IL-12/23 inhibitors) RCTs reported PASI75/90 efficacy responses at weeks 11/12. Regarding efficacy, all biologics showed improved PASI responses over control arms. RRs ranges were 2.02–7.45 in PASI75 and 4.10–14.50 in PASI90. The highest PASI75 responses were seen for ustekinumab 0.375 mg/kg (RR = 7.25, 95% CI 2.83–18.58) and ustekinumab 0.75 mg/kg (RR = 7.45, 95% CI 2.91–19.06) in the CADMUS study. The highest PASI90 response was seen for ixekizumab (RR = 14.50, 95% CI 4.82–43.58) in the IXORA-PEDS study. SAE incidences in pediatric and adult arms with biologics were 0 to 3% except for a pediatric arm with adalimumab 0.40 mg/kg (8%). For adults, pooled RR also showed improved PASI responses over placebo for all biologics, with highest PASI75 response observed for ixekizumab (pooled RR = 16.18, 95% CI 11.83–22.14).

Conclusion

Both adults and children with psoriasis show superior efficacy with biologics compared to control arms after 3 months of treatment with SAE incidences in the low percentages. Additional longer-term clinical studies are warranted to fully understand the overall efficacy-safety profile of biologics in children with moderate-to-severe psoriasis.
COVID-19 and rheumatic diseases: A mini-review
Authors: Roseti Livia , Grigolo Brunella
Published: September 2022

Joint pain and arthralgia can be manifestations of COVID-19, and studies evaluating long COVID symptoms identified the persistence of these disorders. Moreover, some case reports highlighted the development of new inflammatory arthritis in patients with COVID-19, suggesting a possible relation. Viral infections and rheumatic diseases share a documented relationship; they have been associated with genetic and environmental risk factors responsible for some of them. There is crosstalk between viruses and the immune system during the development of several rheumatic diseases. Moreover, infections may participate in the pathogenesis of autoimmune rheumatic diseases and contribute to patient mortality. Therefore, it is crucial to provide a clearer insight into the interaction between viral infections and rheumatic diseases. Here, we provide a mini-review of the current literature with the aim of shedding light on the relationship between COVID-19 and rheumatic or musculoskeletal diseases, which is still unclear. Specifically, we examined several aspects: risk for the rheumatic population of acquiring the virus or developing severe symptoms, similarities of COVID-19 and arthritis, the possible rheumatic consequence of COVID-19, of rheumatic drugs and vaccines, and COVID-19 prevention in rheumatic patients through vaccination.
Metagenomic analysis of the soil microbial composition and salt tolerance mechanism in Yuncheng Salt Lake, Shanxi Province
Authors: Zeng Feifeng , Zhu Yonghong , Zhang Dongling , Zhao Zengqiang , Li Quansheng , Ma Panpan , Zhang Guoli , Wang Yuan , Wu Shenjie , Guo Sandui , Sun Guoqing
Published: September 2022

The soil in Yuncheng Salt Lake has serious salinization and the biogeographic environment affects the composition and distribution of special halophilic and salt-tolerant microbial communities in this area. Therefore, this study collected soils at distances of 15, 30, and 45 m from the Salt Lake and used non-saline soil (60 m) as a control to explore the microbial composition and salt tolerance mechanisms using metagenomics technology. The results showed that the dominant species and abundance of salt-tolerant microorganisms changed gradually with distance from Salt Lake. The salt-tolerant microorganisms can increase the expression of the Na+/H+ antiporter by upregulating the Na+/H+ antiporter subunit mnhA-G to respond to salt stress, simultaneously upregulating the genes in the betaine/proline transport system to promote the conversion of choline into betaine, while also upregulating the trehalose/maltose transport system encode genes to promote the synthesis of trehalose to resist a high salt environment.
Intestinal microbial diversity in female rhesus (Macaca mulatta) at different physiological periods
Authors: Li Yanyan , Yang Fengmei , Chen Lixiong , Duan Suqin , Jin Weihua , Liu Quan , Xu Hongjie , Zhang Wei , Li Yongjie , Wang Junbin , He Zhanlong , Zhao Yuan
Published: September 2022

To explore the relationship between the changes in the physiological period and the fecal microbial population of female rhesus monkeys by measuring microbial composition of fecal samples and the serum hormones. Blood and fecal samples were collected from six female adult rhesus monkeys during the menstrual period (MP), ovulation period (OP), and Luteal period (LP). Serum estradiol (E2) and progesterone (P) levels were determined by the chemiluminescence method and the stool samples were subjected to high-throughput 16S rRNA sequencing. The highest level of E2 and P secretions were during the MP, and LP, respectively. Stool samples produced valid sequences and the number of operational taxonomic unit/OTU was: 810056/3756 (MP), 845242/4159 (OP), 881560/3970 (LP). At the phylum level, the three groups of Firmicutes and Bacteroides accounted for > 95%. The dominant flora at the LP was Bacteroides (53.85%), the dominant flora at the MP and OP was Firmicutes, 64.08 and 56.53%, respectively. At the genus level, the dominant genus at the LP was Prevotella, the dominant genera at the MP were Prevotella, Oncococcus, Streptococcus, and Kurtella. The dominant genera at OP were Prevotella and Nocococcus. At the phylum level, P levels were negatively correlated to Firmicutes, Actinomycetes Actinobacteria, and Fibrobacteres, but positively correlated to Bacteroidetes. Likewise, E2 was positively correlated to Proteobacteria but negatively correlated to Euryarchaeota. At the genus level, P hormone showed a significant correlation with 16 bacterial species, and E2 was significantly correlated to seven bacterial species. Function prediction analysis revealed a high similarity between the MP and OP with six differentially functional genes (DFGs) between them and 11 DFGs between OP and LP (P < 0.05). Fecal microbiota types of female rhesus monkeys varied with different stages of the menstrual cycle, possibly related to changes in hormone levels.
Cytoplasmic tail determines the membrane trafficking and localization of SARS-CoV-2 spike protein
Authors: Li Qinlin , Liu Yihan , Zhang Leiliang
Published: September 2022

The spike (S) glycoprotein of SARS-CoV-2 mediates viral entry through associating with ACE2 on host cells. Intracellular trafficking and palmitoylation of S protein are required for its function. The short cytoplasmic tail of S protein plays a key role in the intracellular trafficking, which contains the binding site for the host trafficking proteins such as COPI, COPII and SNX27. This cytoplasmic tail also contains the palmitoylation sites of S protein. Protein palmitoylation modification of S protein could be catalyzed by a family of zinc finger DHHC domain-containing protein palmitoyltransferases (ZDHHCs). The intracellular trafficking and membrane location facilitate surface expression of S protein and assembly of progeny virions. In this review, we summarize the function of S protein cytoplasmic tail in transportation and localization. S protein relies on intracellular trafficking pathways and palmitoylation modification to facilitate the life cycle of SARS-CoV-2, meanwhile it could interfere with the host transport pathways. The interplay between S protein and intracellular trafficking proteins could partially explain the acute symptoms or Long-COVID complications in multiple organs of COVID-19 patients.
Pleiotropic effects of DCLK1 in cancer and cancer stem cells
Authors: Chhetri Dibyashree , Vengadassalapathy Srinivasan , Venkadassalapathy Santhosh , Balachandran Varadharaju , Umapathy Vidhya Rekha , Veeraraghavan Vishnu Priya , Jayaraman Selvaraj , Patil Shankargouda , Iyaswamy Ashok , Palaniyandi Kanagaraj , Gnanasampanthapandian Dhanavathy
Published: September 2022

Doublecortin-like kinase 1 (DCLK1), a protein molecule, has been identified as a tumor stem cell marker in the cancer cells of gastrointestinal, pancreas, and human colon. DCLK1 expression in cancers, such as breast carcinoma, lung carcinoma, hepatic cell carcinoma, tuft cells, and human cholangiocarcinoma, has shown a way to target theDCLK1gene and downregulate its expression. Several studies have discussed the inhibition of tumor cell proliferation along with neoplastic cell arrest when theDCLK1gene, which is expressed in both cancer and normal cells, was targeted successfully. In addition, previous studies have shown that DCLK1 plays a vital role in various cancer metastases. The correlation of DCLK1 with numerous stem cell receptors, signaling pathways, and genes suggests its direct or an indirect role in promoting tumorigenesis. Moreover, the impact of DCLK1 was found to be related to the functioning of an oncogene. The downregulation of DCLK1 expression by using targeted strategies, such as embracing the use of siRNA, miRNA, CRISPR/Cas9 technology, nanomolecules, specific monoclonal antibodies, and silencing the pathways regulated by DCLK1, has shown promising results in bothin vitroandin vivostudies on gastrointestinal (GI) cancers. In this review, we will discuss about the present understanding of DCLK1 and its role in the progression of GI cancer and metastasis.
Ischemia as a common trigger for Alzheimer’s disease
Authors: Elman-Shina Karin , Efrati Shai
Published: September 2022

Alzheimer’s disease has various potential etiologies, all culminating in the accumulation of beta -amyloid derivatives and significant cognitive decline. Vascular-related pathology is one of the more frequent etiologies, especially in persons older than 65 years, as vascular risk factors are linked to both cerebrovascular disease and the development of AD. The vascular patho-mechanism includes atherosclerosis, large and small vessel arteriosclerosis, cortical and subcortical infarcts, white matter lesions, and microbleeds. These insults cause hypoperfusion, tissue ischemia, chronic inflammation, neuronal death, gliosis, cerebral atrophy, and accumulation of beta-amyloid and phosphorylated tau proteins. In preclinical studies, hyperbaric oxygen therapy has been shown to reverse brain ischemia, and thus alleviate inflammation, reverse the accumulation of beta-amyloid, induce regeneration of axonal white matter, stimulate axonal growth, promote blood–brain barrier integrity, reduce inflammatory reactions, and improve brain performance. In this perspective article we will summarize the patho-mechanisms induced by brain ischemia and their contribution to the development of AD. We will also review the potential role of interventions that aim to reverse brain ischemia, and discuss their relevance for clinical practice.
The role of autophagic kinases in regulation of axonal function
Authors: Berth Sarah H. , Rich Dominick J. , Lloyd Thomas E.
Published: September 2022

Autophagy is an essential process for maintaining cellular homeostasis. Highlighting the importance of proper functioning of autophagy in neurons, disruption of autophagy is a common finding in neurodegenerative diseases. In recent years, evidence has emerged for the role of autophagy in regulating critical axonal functions. In this review, we discuss kinase regulation of autophagy in neurons, and provide an overview of how autophagic kinases regulate axonal processes, including axonal transport and axonal degeneration and regeneration. We also examine mechanisms for disruption of this process leading to neurodegeneration, focusing on the role of TBK1 in pathogenesis of Amyotrophic Lateral Sclerosis.
Magnetic resonance imaging of endolymphatic hydrops in Ménière's disease: A comparison of the diagnostic value of multiple scoring methods
Authors: Xiao Heng , Guo Xiaojing , Cai Huimin , Lin Jianwei , Lin Chenxin , Fang Zheming , Ye Shengnan
Published: September 2022

Objectives

To compare three methods of scoring endolymphatic hydrops in patients with Ménière's disease in order to assess the correlation between endolymphatic hydrops and auditory characteristics.

Methods

A retrospective study of 97 patients with unilateral definite Ménière's disease (DMD) who underwent contrast-enhanced three-dimensional fluid attenuated inversion recovery (3D FLAIR) MRI. Each patient was scored by the Inner Ear Structural Assignment Method (IESAM), the Saccule to utricle area ratio (SURI), and the Four Stage Vestibular Hydrops Grading (FSVH), according to their corresponding axial images. Cohen's Kappa and intra-class correlation coefficient were used for consistency testing, combined with binary logistic regression analysis, to compare the sensitivity and specificity of the three methods. The degree of hydrops in different stages of MD was compared. The correlation between endolymphatic hydrops in the inner ear sub-units and hearing thresholds was further analyzed.

Results

The intra- and inter-reader reliability for the scoring of endolymphatic hydrops were excellent. The IESAM had a high diagnostic value for identifying definite Ménière's disease (sensitivity: 86.6%, specificity: 97.9%). The hearing thresholds were correlated with the degree of endolymphatic hydrops. Stages 3 and 4 were more significant for the severity of hydrops than stage 1. Within the subgroups of the Ménière's disease patients, compared with the non-hydrops group and the pure vestibular hydrops (V group), the cochlear combined vestibular hydrops group (CV group) had significantly higher auditory thresholds. The amplitude ratio of electrocochleogram was significantly higher in the affected ear than in the healthy ear.

Conclusion

The IESAM is a more sensitive and specific diagnostic scoring method for the diagnosis of DMD. Diagnostic imaging may improve the detection of inner ear hydrops which is correlated with severity of hearing loss. A comprehensive evaluation of the inner ear sub-unit structures maybe necessary.
The correlation between tinnitus-specific and quality of life questionnaires to assess the impact on the quality of life in tinnitus patients
Authors: Van Hoof Lauren , Kleinjung Tobias , Cardon Emilie , Van Rompaey Vincent , Peter Nicole
Published: September 2022

Introduction

Subjective tinnitus is often associated with a reduction in health-related quality of life (HRQoL). The HRQoL represents the impact of tinnitus on an individual's life by addressing the physical, social, and psychological domains of 1. A limited amount of studies has investigated the association between tinnitus and HRQoL questionnaires. The aim of this study was to examine the correlation between tinnitus-specific and HRQoL questionnaires in order to shorten fulfilling questionnaires, as it is often time-consuming.

Material and method

Eighty-five patients with tinnitus as primary complaint completed five questionnaires, including one general, two tinnitus-specific, and two generic HRQoL questionnaires: Tinnitus Sample Case History Questionnaire (TSCHQ), Tinnitus Functional Index (TFI), Tinnitus Handicap Inventory (THI), short version of World Health Organization Quality of Life (WHOQOL-BREF), and the eight-item Short-Form (SF-8). Four simple linear regression models were used to analyze the relationship between the THI and TFI and the WHOQOL-BREF and SF-8.

Results

A negative and strong correlation was found between the tinnitus questionnaires and the SF-8. More than half of the variability in the SF-8 scores could be explained by the TFI and THI, respectively 50.6 and 54.4% (all p < 0.001). A strong negative regression was also found between the WHOQOL-BREF and the THI and TFI with a decrease in the determination coefficient of approximately 10% compared with the SF-8. The weakest correlation (regression coefficient of 0.628, p < 0.001) was observed between the WHOQOL-BREF and the TFI, indicating that the WHOQOL-BREF mean score explained 39.4% of the TFI. When looking at the subdomain scores, a strong correlation was observed between the QoL subdomain of the TFI and a combination of the physical and psychological subdomain of the WHOQOL-BREF (r = −0.627, p < 0.001).

Conclusion

The QoL subdomain of the TFI gives good information about the physical and psychological health. Thus, the TFI is suitable to assess both tinnitus severity and the HRQoL. The coefficients of determination of the WHOQOL-BREF were significantly lower compared to the SF-8, suggesting that the WHOQOL-BREF provides more specific information about HRQoL. If more specific information on HRQoL, such as “environment” and “social relationships”, is required, it is recommended to use the WHOQOL-BREF.
Oscillatory beta/alpha band modulations: A potential biomarker of functional language and motor recovery in chronic stroke?
Authors: Ulanov Maxim , Shtyrov Yury
Published: September 2022

Stroke remains one of the leading causes of various disabilities, including debilitating motor and language impairments. Though various treatments exist, post-stroke impairments frequently become chronic, dramatically reducing daily life quality, and requiring specific rehabilitation. A critical goal of chronic stroke rehabilitation is to induce, usually through behavioral training, experience-dependent plasticity processes in order to promote functional recovery. However, the efficiency of such interventions is typically modest, and very little is known regarding the neural dynamics underpinning recovery processes and possible biomarkers of their efficiency. Some studies have emphasized specific alterations of excitatory–inhibitory balance within distributed neural networks as an important recovery correlate. Neural processes sensitive to these alterations, such as task-dependent oscillatory activity in beta as well as alpha bands, may be candidate biomarkers of chronic stroke functional recovery. In this review, we discuss the results of studies on motor and language recovery with a focus on oscillatory processes centered around the beta band and their modulations during functional recovery in chronic stroke. The discussion is based on a framework where task-dependent modulations of beta and alpha oscillatory activity, generated by the deep cortical excitatory–inhibitory microcircuits, serve as a neural mechanism of domain-general top-down control processes. We discuss the findings, their limitations, and possible directions for future research.
A guide for researchers seeking training in retrospective data harmonization for population neuroscience studies of Alzheimer's disease and related dementias
Authors: Shaaban C. Elizabeth , Tudorascu Dana L. , Glymour M. Maria , Cohen Ann D. , Thurston Rebecca C. , Snyder Heather M. , Hohman Timothy J. , Mukherjee Shubhabrata , Yu Lan , Snitz Beth E.
Published: September 2022

Due to needs surrounding rigor and reproducibility, subgroup specific disease knowledge, and questions of external validity, data harmonization is an essential tool in population neuroscience of Alzheimer's disease and related dementias (ADRD). Systematic harmonization of data elements is necessary to pool information from heterogeneous samples, and such pooling allows more expansive evaluations of health disparities, more precise effect estimates, and more opportunities to discover effective prevention or treatment strategies. The key goal of this Tutorial in Population Neuroimaging Curriculum, Instruction, and Pedagogy article is to guide researchers in creating a customized population neuroscience of ADRD harmonization training plan to fit their needs or those of their mentees. We provide brief guidance for retrospective data harmonization of multiple data types in this area, including: (1) clinical and demographic, (2) neuropsychological, and (3) neuroimaging data. Core competencies and skills are reviewed, and resources are provided to fill gaps in training as well as data needs. We close with an example study in which harmonization is a critical tool. While several aspects of this tutorial focus specifically on ADRD, the concepts and resources are likely to benefit population neuroscientists working in a range of research areas.
Combined brain-derived neurotrophic factor and neurotrophin-3 treatment is preferred over either one separately in the preservation of the auditory nerve in deafened guinea pigs
Authors: Vink Henk A. , Ramekers Dyan , Thomeer Hans G. X. M. , Versnel Huib
Published: September 2022

Severe hearing loss or deafness is often caused by cochlear hair cell loss and can be mitigated by a cochlear implant (CI). CIs target the auditory nerve, consisting of spiral ganglion cells (SGCs), which degenerate gradually, following hair cell loss. In animal models, it has been established that treatment with the neurotrophins brain-derived neurotrophic factor (BDNF) and neurotrophin-3 (NT-3) reduce SGC degeneration. In this study, we aimed to investigate whether treatment with both BDNF and NT-3 (Cocktail) is superior to treatment with each neurotrophin separately regarding cell preservation and neural responsiveness to electrical stimulation. To this end, deafened guinea pigs received neurotrophic treatment in their right ear via a gelatin sponge on the perforated round window membrane, followed by cochlear implantation 4 weeks later in the same ear for electrophysiological recordings to various stimulation paradigms. Normal-hearing and deafened untreated guinea pigs were included as positive and negative controls, respectively. Substantial SGC loss occurred in all deafened animals. Each of the neurotrophic treatments led to enhanced SGC survival mainly in the basal turn of the cochlea, gradually decreasing toward the apex. The Cocktail treatment resulted in the highest SGC survival in the treated ear, followed by BDNF, with the least protection of SGCs following NT-3 treatment. Survival of the SGC’s peripheral processes (PPs) followed the same trend in response to the treatment. However, survival of SGCs and PPs in the contralateral untreated ears was also highest in the Cocktail group. Consequently, analysis of the ratio between the treated and untreated ears showed that the BDNF group, which showed low SGC survival in the untreated ear, had the highest relative SGC survival of the three neurotrophin-treated groups. Neurotrophic treatment had positive effects in part of the electrically evoked compound action-potential recording paradigms. These effects were only observed for the BDNF or Cocktail treatment. We conclude that treatment with either BDNF or a cocktail of BDNF and NT-3 is preferred to NT-3 alone. Furthermore, since the Cocktail treatment resulted in better electrophysiological responsiveness and overall higher SGC survival than BDNF alone, we are inclined to recommend the Cocktail treatment rather than BDNF alone.
Causal relationship between tea intake and cardiovascular diseases: A Mendelian randomization study
Authors: Gao Ning , Ni Ming , Song Jiangwei , Kong Minjian , Wei Dongdong , Dong Aiqiang
Published: September 2022

Background

Although studies suggest that tea consumption is associated with a reduced risk of cardiovascular disease (CVD). There is no unified conclusion about the potential relationship between tea drinking and CVD. We used a two-sample Mendelian randomized (MR) analysis to systematically explore the causal relationship between tea intake and CVD subtypes for the first time. Furthermore the mediating effect of hypertension was also explored by a two-step MR.

Methods

Genetic instruments for tea intake were identified from a genome-wide association studies (GWAS) involving 447,485 people. Summary data on cardio-vascular disease came from different GWAS meta-analysis studies. In the first step we explored the causal effect of tea intake and CVD. In the second step, we examined the association of hypertension with heart failure and ischemic stroke and estimated the mediating effect of hypertension. Inverse variance weighted MR analysis was used as the primary method for causal analysis. A further sensitivity analysis was performed to ensure robustness of the results.

Results

One standard deviation increase in tea intake was associated with a 25% (OR = 0.75, 95%CI = 0.61–0.91, p = 0.003) lower risk of hypertension, a 28% (OR = 0.72, 95%CI = 0.58–0.89, p = 0.002) lower risk of heart failure, and a 29% (OR = 0.71, 95%CI = 0.55–0.92, p = 0.008) lower risk of ischemic stroke, respectively. And the association between tea drinking and the risk of heart failure and ischemic stroke may be mediated by hypertension. Sensitivity analyses found little evidence of pleiotropy.

Conclusion

Our two-sample MR analysis provided genetic evidence that tea intake was significantly associated with a reduced risk of hypertension, heart failure, and ischemic stroke, and that hypertension may be a potential mediator. Further large randomized controlled trials should be conducted to confirm the causal effect of tea consumption on cardiovascular disease risk.
Production of an ultrasound-assisted biosurfactant postbiotic from agro-industrial wastes and its activity against Newcastle virus
Authors: Behzadnia Asma , Moosavi-Nasab Marzieh , Mohammadi Ali , Babajafari Siavash , Tiwari Brijesh K.
Published: September 2022

The objective of this study is to optimize the biosurfactant production by Lactobacillus plantarum ATCC 8014 using low-cost substrates from industrial sources applying ultrasonication at 28 kHz frequency (power of 100 W). Given this, whey permeate and sugar cane molasses were screened to continue optimization using a central composite design to improve the production. Then, the effect of ultrasound was examined at different stages of microbial growth. The combination of whey permeate and sugar cane molasses with yeast extract (2.4 g/L) and inoculum size of 4.8% for 26 h of fermentation time significantly influenced biosurfactant production by reducing the surface tension of water (41.86 ± 0.24 mN/m). Moreover, ultrasonication led to the further reduction in surface tension value (39.95 ± 0.35 mN/m). Further, no significant differences were observed between products from synthetic and waste-based media. The biosurfactants exhibited antiviral activity against Newcastle disease virus (NDV) LaSota strain. It was discovered that biosurfactant produced in agro-food wastes with a significant antiviral effectiveness could be used to develop commercial application instead of chemical surfactants and biosurfactants from expensive synthetic media.
Cellular uptake, transport mechanism and anti-inflammatory effect of cyanidin-3-glucoside nanoliposomes in Caco-2/RAW 264.7 co-culture model
Authors: Yang Mengyu , Lu Xiaoqin , Xu Jie , Liu Xiaofeng , Zhang Wei , Guan Rongfa , Zhong Hao
Published: September 2022

Cyanidin-3-glucoside (C3G), which is the widest and richest anthocyanin (ACN) found in the edible fruit and vegetables, has been illustrated to perform a wide range of bioactivities. Nanoliposomes can inhibit C3G degradation and enhance the absorption rate of C3G as tools for conveying materials to particular locations. This experiment aims to study the absorption, transport and anti-inflammatory effects of C3G nanoliposomes in Caco-2/RAW 264.7 co-culture model, which symbolizes an intestinal inflammation system. The results indicated that the uptake and transport of C3G nanoliposomes by Caco-2/RAW 264.7 co-culture model were concentration-dependent as well as affected by temperature (37 and 4°C) and endocytic inhibitors, which revealed C3G nanoliposomes penetrate cells via endocytosis. Moreover, compared with C3G, C3G nanoliposomes significantly decreased pro-inflammatory cytokine expression (tumor necrosis factor (TNF)-α, interleukin (IL)-1β, IL-6, IL-8), suggesting a stronger anti-inflammatory potential. Conclusively, the uptake of C3G nanoliposomes by Caco-2/RAW 264.7 co-culture model is mainly involved in macropinocytosis and endocytosis mediated by carrier protein (clathrin). C3G nanoliposomes may play a better role in the treatment of LPS-induced intestinal inflammation diseases.
A correlation analysis of sacrococcygeal chordoma imaging and clinical characteristics with the prognostic factors
Authors: Zhao Fei , Tian Shujian , Zheng Lei , Li Yue , Zhang Lu , Gao Song
Published: September 2022

Objective

To investigate the imaging and clinical risk factors related to the postoperative recurrence of sacrococcygeal chordoma.

Methods

63 patients of sacrococcygeal chordoma proved by operation and pathology in our hospital from January 2009 to December 2019 were retrospectively analyzed in the related factors of imaging manifestations, pathological type, and extent of surgical resection. The recurrence of sacrococcygeal chordoma was followed up. Univariate Kaplan-Meier survival analysis and multivariate Cox regression analysis were used to analyze the related factors of recurrence.

Results

On plain radiographs and CT scans, chordoma primarily manifested as osteolytic bone loss and uneven soft tissue mass, with typical calcification or ossification (56.1 percent). Numerous chunk nodules with clearly high signal levels and short signal intervals were seen as the “pebble” in MRI characteristics on T2WI. The follow-up period ranged from 20 to 130 months, with a median time of 47.5 months. There were 14 recurrences (22. 2%) during the follow-up period. 13 patients with recurrence underwent surgery again, and 5 of them recurred after surgery (recurrence time range 3 to 97 months, median 38. 5 months). 6 (42.8%), 8 (57. 1%), and 13 (92. 9%) of the 14 patients with recurrence recurred within 2, 3, and 5 years after surgery, respectively. Univariate Kaplan-Meier survival analysis showed that occurred with local infiltration, Low differentiated chordoma, partial resection had a high postoperative recurrence rate, and all differences were statistically significant (P<0.05). Multi-factor Cox regression analysis showed whether local infiltration occurred and the degree of tumor resection were independent risk factors for tumor recurrence.

Conclusion

Sacrococcygeal chordoma has a high tendency of recurrence, and the likelihood of recurrence is higher in tumor occurred with local infiltration, non-complete tumor resection and low differentiated chordoma, which can be considered to shorten the review cycle and complete tumor resection as much as possible during surgery.
Jinghua Weikang capsule for helicobacter pylori eradication: A systematic review and meta-analysis with trial sequential analysis
Authors: Zhao Qian , Wang Wen-jia , Zhou Shui-ping , Su Jing , Sun He , Zhai Jing-bo , Hu Yun-hui
Published: September 2022

Background:Helicobacter pylori (H. pylori) infection is one of the most common chronic bacterial infections worldwide. The resistance of H. pylori to antibiotics may increase the risk of treatment failure. Complementary and alternative regimens are still needed. This study aimed to critically assess the efficacy and safety of Jinghua Weikang capsule (JWC) for H. pylori eradication.

Materials and methods: PubMed, Embase, Web of Science, Cochrane library, China National Knowledge Infrastructure, Wanfang Digital Periodicals, and Chinese Science and Technology Periodicals database were searched from inception to April 2022. Randomized controlled trials (RCTs) comparing a combination of JWC and conventional treatments with conventional treatments alone or combined with a placebo for H. pylori eradication were considered for inclusion. The primary outcome was H. pylori eradication rate. The meta-analysis and trial sequential analysis (TSA) were conducted where possible.

Results: A total of 34 studies were included in the statistical analysis. A pooled result showed that JWC with the duration of 2 weeks combined with the triple/quadruple therapy could significantly increase the H. pylori eradication rate compared with the triple/quadruple therapy alone (RR: 1.13, 95% CI: 1.05 to 1.21, p = 0.0008). However, the evidence of benefit was not confirmed by TSA. Another pooled result showed that JWC with the duration of 4 weeks combined with the triple/quadruple therapy could significantly increase the H. pylori eradication rate compared with the triple/quadruple therapy alone (RR: 1.21, 95% CI: 1.15 to 1.27, p < 0.00001). The evidence of benefit was confirmed by TSA. There were no statistically significant differences in the incidence of adverse reactions between the two groups.

Conclusion: The present study suggests that JWC with the duration of 4 weeks can significantly improve the H. pylori eradication rate and should be considered as a complementary treatment to conventional regimens for H. pylori eradication. However, more high-quality RCTs are still needed to confirm these findings.
PA_CasualLSTM: A new time series prediction network with the physical constraint and adjusted Fourier neural operator for the time-dependent partial differential equation
Authors: Xiao Chaohao , Zhu Xiaoqian , Cao Xiaoqun , Yin Fukang , Nie Jun , Hu Fujia
Published: September 2022

In this work, a new time series prediction network is proposed in the framework of CasualLSTM with physical constraints and an adjusted Fourier neural operator (FNO) for the solution of the time-dependent partial differential equation. The framework of CasualLSTM is employed to learn the time evolution of spatial features which strengthens the extrapolation capability. With the help of adjusted Fourier layers (AFLs), residual connection, and the adaptive time-marching strategy, the network can quickly converge and extrapolate without labeled data by encoding PDE constraints into loss functions. Two examples, namely, Burger’s equation and two-dimensional Navier–Stokes (N-S) equation are used to evaluate the proposed method. Numerical results show that the proposed method has a good performance in solution accuracy and extrapolability.
Adhesion regulation and the control of cellular rearrangements: From emulsions to developing tissues
Authors: Montel Lorraine , Guigue Quentin , Pontani Lea-Laetitia
Published: September 2022

Cell rearrangements are critical for tissue remodeling during diverse biological processes, such as morphogenesis or cancer progression. They control tissue fluidity and can lead to irreversible shape changes in cohesive tissues. However, the completion of such rearrangements is strongly conditioned by intercellular adhesion, that can prevent their completion or conversely promote them along a given pattern. In this review we explore how intercellular adhesion impacts cell rearrangements at the local scale and how it translates into macroscopic mechanical properties in biological tissues. We first describe general principles obtained from the study of dispersed materials, such as emulsions, in which the mechanical properties and interaction potential between individual particles can be described in a quantitative manner. We then review the effect of varying cell-cell adhesion on rearrangements in vitro model tissues, from cell aggregates to 2D epithelial-like cellular layers. We finally consider developing tissues in which adhesion between the cells is strongly tuned and localized in order to allow for function and shape emergence in the embryo.
Component characterization and commissioning of a gamma-PET prototype detector system
Authors: Binder T. M. , Anagnostatou V. , Dedes G. , Kamada K. , Kang H. G. , Lovatti G. , Nitta M. , Safari M.J. , Zoglauer A. , Parodi K. , Yamaya T. , Thirolf P.G.
Published: September 2022

Hybrid imaging systems, comprising PET and Compton camera modules, have recently gained in interest, due to their capability to simultaneously detect positron annihilation photons and γ-rays from single-photon emitting sources as also used in SPECT. A unique feature of such systems, however, is the capability to also be operated in a so called γ-PET mode. Here, specific β+- emitting radioisotopes (such as 44Sc, 1°C or 14O) are used to detect triple-coincidences between two annihilation γ-rays (in PET imaging) and a third, prompt photon (in Compton imaging), that is emitted by the deexcitation of the decay’s daughter nucleus. Consequently, an intersection between the line-of-response (LOR) and the Compton cone can be determined, which (in principle) allows to localize the photons’ emission vertices on a single decay basis. In practice, however, a few tens of events are required to localize a point source, which still results in a considerable sensitivity improvement compared to conventional PET imaging.

For a proof-of-principle study, we used a pixelated GAGG crystal array (16 × 16 crystals; 1.45 × 1.45 × 6 mm3 crystal volume; 25 μm SPAD SiPMs as readout) as Compton camera scatterer and PET detectors, and a three-layered LYSO crystal array (1.2 × 1.2 × 6.66 mm3 crystal volume; 50 μm SPAD SiPMs as readout) as Compton camera absorber. We characterized the individual detector components with regard to their energy resolution and the capability to identify the various scintillator array’s individual crystals. Our first γ-PET prototype was tested in PET-only and Compton-only imaging mode, in which spatial resolutions of 3.2–3.5 mm FWHM (PET-only mode) and 14.4–19.3 mm FWHM (Compton-only mode at 1,274 keV) were achieved, respectively, using a22Na point source and 10 iterations of an ML-EM reconstruction algorithm. By using triple-coincidences in a γ-PET mode (event-wise intersection of the LOR and the Compton cone), we could demonstrate the capability of the prototype to perform a full 3D point source reconstruction using only 77 events.
Energy competition and pairing effect for the fission path with a microscopic model
Authors: Fujio Kazuki , Ebata Shuichiro , Inakura Tsunenori , Ishizuka Chikako , Chiba Satoshi
Published: September 2022

We studied the fission barrier of 236U with a microscopic mean-field model employing Skyrme-type effective interaction. It has been known that the microscopic mean-field calculation had a trend of overestimating the fission barriers derived from the fission cross section, and our results were found to be in accord with it. To reveal a major factor of the discrepancy, we investigated various components of the Skyrme energy-density functional building of the fission barrier height by a static mean-field model, including nuclear pairing correlation. We found that the spin-orbit and pairing terms affected the fine structure of the fission barrier as a function of elongation of the nucleus. Therefore, we investigated the sensitivity of the fission barrier height on the pairing strength, considering the change of level density along the calculated fission path.
Thermal and solutal energy transport analysis in entropy generation of hybrid nanofluid flow over a vertically rotating cylinder
Authors: Ahmad Shafiq , Ahammad N. Ameer , Khan Muhammad Naveed , Algehyne Ebrahem A. , Tag-Eldin Elsayed , Gepreel Khaled A. , Guedri Kamel , Galal Ahmed M.
Published: September 2022

An investigation of an axisymmetric mixed convective boundary layer flow of silver-titanium dioxide/water (Ag−TiO2/H2O) hybrid nanofluid towards vertically and rotating stretching cylinder with entropy generation is conducted. The Cattaneo-Christov theory and joule heating effect are used to analyze the features of thermal energy. Moreover, the magnetic impact and convective boundary conditions on the vertical surface also considered in the current investigation. The developing equations for momentum, energy and entropy generation are modelled and by the usage of similarity variables to transform into the system of nonlinear ordinary differential equations (ODEs). The solutions of nonlinear ODEs are obtained numerically with the assistance of BVP4C MATLAB built-in scheme. The graphical consequences and relevant physical reasoning regarding the velocity, temperature, and concentration profiles are discussed. It is noteworthy that strong estimation of buoyancy ratio and mixed convection parameter enhances axial velocity, but the swirl velocity is diminished. The fluid temperature and concentration both are diminished due to thermal and solutal stratification effects. It is also seen that thermal Biot and Eckert numbers enhance the temperature distribution. Further, the Reynold number improves entropy generation.
Components of aircraft life support systems interact with each other and the user
Authors: Robinson F. Eric , Shykoff Barbara E. , Warkander Dan E.
Published: September 2022

The life support system in a tactical aircraft provides necessary supplemental oxygen to the aircrew. However, interactions among its various components may generate unexpected breathing loads. We focus here on the interactions between a regulator and breathing mask commonly used together in the U.S. Navy, the CRU-103 regulator and MBU 23/P mask, and some effects of the interactions on the user. The data reported were collected during a larger research effort examining potential physiological and cognitive effects of low regulator inlet pressures. Seventeen participants completed a series of tasks under mild exercise while breathing 40% O2(balance N2) from an MBU-23/P mask supplied by a CRU-103 regulator with supply pressures 10, 6, 4, and 2 psig (CRU-103 specifications are for inlet pressures from 5 to 120 psig). Variables measured included flow to the mask and pressures at the regulator supply, in the hose to the mask, and in the mask. In addition to restricting inspiratory flow, low inlet pressure to the CRU-103 caused a counterintuitive overshoot in gas delivery pressure at end-inspiration, a mean increase of 1.5 cm H2O between the 10- and 2 psig conditions. The added pressure to the exhalation valve increased the expiratory threshold, the pressure to start expiratory flow, by approximately 2 cm H2O, increasing the effort needed to exhale.