bluuebunny/crossref_metadata_2025 huggingface dataset:
Supplementary Table 1 from BCL2 Suppresses PARP1 Function and Nonapoptotic Cell Death
Authors: Dutta Chaitali , Day Tovah , Kopp Nadja , van Bodegom Diederik , Davids Matthew S. , Ryan Jeremy , Bird Liat , Kommajosyula Naveen , Weigert Oliver , Yoda Akinori , Fung Hua , Brown Jennifer R. , Shapiro Geoffrey I. , Letai Anthony , Weinstock David M.
Published: April 2023

PDF file - 19K, Peptides recovered from immunprecipitation of BCL2 from the chromatin fraction of irradiated cells that matched PARP1 with at least 99% confidence
Supplementary Table 8 from Novel Theranostic Opportunities Offered by Characterization of Altered Membrane Lipid Metabolism in Breast Cancer Progression
Authors: Hilvo Mika , Denkert Carsten , Lehtinen Laura , Müller Berit , Brockmöller Scarlet , Seppänen-Laakso Tuulikki , Budczies Jan , Bucher Elmar , Yetukuri Laxman , Castillo Sandra , Berg Emilia , Nygren Heli , Sysi-Aho Marko , Griffin Julian L. , Fiehn Oliver , Loibl Sibylle , Richter-Ehrenstein Christiane , Radke Cornelia , Hyötyläinen Tuulia , Kallioniemi Olli , Iljin Kristiina , Orešič Matej
Published: April 2023

Supplementary Table 8 from Novel Theranostic Opportunities Offered by Characterization of Altered Membrane Lipid Metabolism in Breast Cancer Progression
Supplementary Methods, Figures 1-3 from BCL2 Suppresses PARP1 Function and Nonapoptotic Cell Death
Authors: Dutta Chaitali , Day Tovah , Kopp Nadja , van Bodegom Diederik , Davids Matthew S. , Ryan Jeremy , Bird Liat , Kommajosyula Naveen , Weigert Oliver , Yoda Akinori , Fung Hua , Brown Jennifer R. , Shapiro Geoffrey I. , Letai Anthony , Weinstock David M.
Published: April 2023

PDF file - 108K
Supplementary Figure 3 from BCL2 Suppresses PARP1 Function and Nonapoptotic Cell Death
Authors: Dutta Chaitali , Day Tovah , Kopp Nadja , van Bodegom Diederik , Davids Matthew S. , Ryan Jeremy , Bird Liat , Kommajosyula Naveen , Weigert Oliver , Yoda Akinori , Fung Hua , Brown Jennifer R. , Shapiro Geoffrey I. , Letai Anthony , Weinstock David M.
Published: April 2023

PDF file - 12K, Sensitivity of lung cancer cell lines to the PARP1 inhibitor AG014699
Supplementary Table 6 from Novel Theranostic Opportunities Offered by Characterization of Altered Membrane Lipid Metabolism in Breast Cancer Progression
Authors: Hilvo Mika , Denkert Carsten , Lehtinen Laura , Müller Berit , Brockmöller Scarlet , Seppänen-Laakso Tuulikki , Budczies Jan , Bucher Elmar , Yetukuri Laxman , Castillo Sandra , Berg Emilia , Nygren Heli , Sysi-Aho Marko , Griffin Julian L. , Fiehn Oliver , Loibl Sibylle , Richter-Ehrenstein Christiane , Radke Cornelia , Hyötyläinen Tuulia , Kallioniemi Olli , Iljin Kristiina , Orešič Matej
Published: April 2023

Supplementary Table 6 from Novel Theranostic Opportunities Offered by Characterization of Altered Membrane Lipid Metabolism in Breast Cancer Progression
Supplementary Figure 2 from BCL2 Suppresses PARP1 Function and Nonapoptotic Cell Death
Authors: Dutta Chaitali , Day Tovah , Kopp Nadja , van Bodegom Diederik , Davids Matthew S. , Ryan Jeremy , Bird Liat , Kommajosyula Naveen , Weigert Oliver , Yoda Akinori , Fung Hua , Brown Jennifer R. , Shapiro Geoffrey I. , Letai Anthony , Weinstock David M.
Published: April 2023

PDF file - 135K, 293T cells were transfected with empty pcDNA3.1 or pcDNA3.1-HA-BCL2. After 24 hours, cells were harvested and lysates were separated into nuclear (nuc) and cytoplasmic (cyto) fractions. Western blotting was performed using indicated antibodies. Untransfected 293T, OCI-LY1 and OCI-LY8 cells were collected while in exponential culture
Supplementary Table 4 from Novel Theranostic Opportunities Offered by Characterization of Altered Membrane Lipid Metabolism in Breast Cancer Progression
Authors: Hilvo Mika , Denkert Carsten , Lehtinen Laura , Müller Berit , Brockmöller Scarlet , Seppänen-Laakso Tuulikki , Budczies Jan , Bucher Elmar , Yetukuri Laxman , Castillo Sandra , Berg Emilia , Nygren Heli , Sysi-Aho Marko , Griffin Julian L. , Fiehn Oliver , Loibl Sibylle , Richter-Ehrenstein Christiane , Radke Cornelia , Hyötyläinen Tuulia , Kallioniemi Olli , Iljin Kristiina , Orešič Matej
Published: April 2023

Supplementary Table 4 from Novel Theranostic Opportunities Offered by Characterization of Altered Membrane Lipid Metabolism in Breast Cancer Progression
Supplementary Table 3 from Novel Theranostic Opportunities Offered by Characterization of Altered Membrane Lipid Metabolism in Breast Cancer Progression
Authors: Hilvo Mika , Denkert Carsten , Lehtinen Laura , Müller Berit , Brockmöller Scarlet , Seppänen-Laakso Tuulikki , Budczies Jan , Bucher Elmar , Yetukuri Laxman , Castillo Sandra , Berg Emilia , Nygren Heli , Sysi-Aho Marko , Griffin Julian L. , Fiehn Oliver , Loibl Sibylle , Richter-Ehrenstein Christiane , Radke Cornelia , Hyötyläinen Tuulia , Kallioniemi Olli , Iljin Kristiina , Orešič Matej
Published: April 2023

Supplementary Table 3 from Novel Theranostic Opportunities Offered by Characterization of Altered Membrane Lipid Metabolism in Breast Cancer Progression
Supplementary Methods from Novel Theranostic Opportunities Offered by Characterization of Altered Membrane Lipid Metabolism in Breast Cancer Progression
Authors: Hilvo Mika , Denkert Carsten , Lehtinen Laura , Müller Berit , Brockmöller Scarlet , Seppänen-Laakso Tuulikki , Budczies Jan , Bucher Elmar , Yetukuri Laxman , Castillo Sandra , Berg Emilia , Nygren Heli , Sysi-Aho Marko , Griffin Julian L. , Fiehn Oliver , Loibl Sibylle , Richter-Ehrenstein Christiane , Radke Cornelia , Hyötyläinen Tuulia , Kallioniemi Olli , Iljin Kristiina , Orešič Matej
Published: April 2023

Supplementary Methods from Novel Theranostic Opportunities Offered by Characterization of Altered Membrane Lipid Metabolism in Breast Cancer Progression
Supplementary Figures 1-2 from Novel Theranostic Opportunities Offered by Characterization of Altered Membrane Lipid Metabolism in Breast Cancer Progression
Authors: Hilvo Mika , Denkert Carsten , Lehtinen Laura , Müller Berit , Brockmöller Scarlet , Seppänen-Laakso Tuulikki , Budczies Jan , Bucher Elmar , Yetukuri Laxman , Castillo Sandra , Berg Emilia , Nygren Heli , Sysi-Aho Marko , Griffin Julian L. , Fiehn Oliver , Loibl Sibylle , Richter-Ehrenstein Christiane , Radke Cornelia , Hyötyläinen Tuulia , Kallioniemi Olli , Iljin Kristiina , Orešič Matej
Published: April 2023

Supplementary Figures 1-2 from Novel Theranostic Opportunities Offered by Characterization of Altered Membrane Lipid Metabolism in Breast Cancer Progression
Supplementary Figure 1 from FGFR2 Isoforms Support Epithelial–Stromal Interactions in Thyroid Cancer Progression
Authors: Guo Miao , Liu Wei , Serra Stefano , Asa Sylvia L. , Ezzat Shereen
Published: April 2023

PDF file - 622K
Supplementary Figure 2 from The Nedd8-Activating Enzyme Inhibitor MLN4924 Induces Autophagy and Apoptosis to Suppress Liver Cancer Cell Growth
Authors: Luo Zhongguang , Yu Guangyang , Lee Hyuk Woo , Li Lihui , Wang Lingyan , Yang Dongqin , Pan Yongfu , Ding Chan , Qian Jing , Wu Lijun , Chu Yiwei , Yi Jing , Wang Xiangdong , Sun Yi , Jeong Lak Shin , Liu Jie , Jia Lijun
Published: April 2023

PDF file - 979K, MLN4924-induced autophagy was partially rescued by N-Acetyl-L-cysteine (NAC)
Supplementary Figure 5 from Activation of Robo1 Signaling of Breast Cancer Cells by Slit2 from Stromal Fibroblast Restrains Tumorigenesis via Blocking PI3K/Akt/β-Catenin Pathway
Authors: Chang Po-Hao , Hwang-Verslues Wendy W. , Chang Yi-Cheng , Chen Chun-Chin , Hsiao Michael , Jeng Yung-Ming , Chang King-Jen , Lee Eva Y.-H.P. , Shew Jin-Yuh , Lee Wen-Hwa
Published: April 2023

PDF file, 23K, Comparable total B-catenin protein expressions in shCtrl and shRobo1 MDA-MB-231 cells.
Supplementary Figure 3 from Activation of Robo1 Signaling of Breast Cancer Cells by Slit2 from Stromal Fibroblast Restrains Tumorigenesis via Blocking PI3K/Akt/β-Catenin Pathway
Authors: Chang Po-Hao , Hwang-Verslues Wendy W. , Chang Yi-Cheng , Chen Chun-Chin , Hsiao Michael , Jeng Yung-Ming , Chang King-Jen , Lee Eva Y.-H.P. , Shew Jin-Yuh , Lee Wen-Hwa
Published: April 2023

PDF file, 26K, Co-staining of Slit2 and (alpha)-SMA expression in fibroblasts of breast cancer specimen.
Supplementary Movie 4 from Intravital FLIM-FRET Imaging Reveals Dasatinib-Induced Spatial Control of Src in Pancreatic Cancer
Authors: Nobis Max , McGhee Ewan J. , Morton Jennifer P. , Schwarz Juliane P. , Karim Saadia A. , Quinn Jean , Edward Mike , Campbell Andrew D. , McGarry Lynn C. , Evans T.R. Jeffry , Brunton Valerie G. , Frame Margaret C. , Carragher Neil O. , Wang Yingxiao , Sansom Owen J. , Timpson Paul , Anderson Kurt I.
Published: April 2023

Supplementary Movie 4 - WMV file 1818K, Representative maximum projection SHG image of fibrillar collagen I used for GLCM analysis, control
Supplementary Figure 5 from Transcription Factor YY1 Contributes to Tumor Growth by Stabilizing Hypoxia Factor HIF-1α in a p53-Independent Manner
Authors: Wu Shourong , Kasim Vivi , Kano Mitsunobu R. , Tanaka Sayaka , Ohba Shinsuke , Miura Yutaka , Miyata Kanjiro , Liu Xueying , Matsuhashi Ako , Chung Ung-il , Yang Li , Kataoka Kazunori , Nishiyama Nobuhiro , Miyagishi Makoto
Published: April 2023

PDF file - 113K, YY1-silencing suppresses the hypoxia-induced HIF-1α protein accumulation
Supplementary Figure 2 from Transcription Factor YY1 Contributes to Tumor Growth by Stabilizing Hypoxia Factor HIF-1α in a p53-Independent Manner
Authors: Wu Shourong , Kasim Vivi , Kano Mitsunobu R. , Tanaka Sayaka , Ohba Shinsuke , Miura Yutaka , Miyata Kanjiro , Liu Xueying , Matsuhashi Ako , Chung Ung-il , Yang Li , Kataoka Kazunori , Nishiyama Nobuhiro , Miyagishi Makoto
Published: April 2023

PDF file - 141K, The proliferation property of the A549-luc stable cells
Supplementary Figure 1 from Transcription Factor YY1 Contributes to Tumor Growth by Stabilizing Hypoxia Factor HIF-1α in a p53-Independent Manner
Authors: Wu Shourong , Kasim Vivi , Kano Mitsunobu R. , Tanaka Sayaka , Ohba Shinsuke , Miura Yutaka , Miyata Kanjiro , Liu Xueying , Matsuhashi Ako , Chung Ung-il , Yang Li , Kataoka Kazunori , Nishiyama Nobuhiro , Miyagishi Makoto
Published: April 2023

PDF file - 127K, shYY1 vectors significantly silence YY1 expression
Supplementary Table 1 from Dithiolethiones Inhibit NF-κB Activity via Covalent Modification in Human Estrogen Receptor–Negative Breast Cancer
Authors: Switzer Christopher H. , Cheng Robert Y.-S. , Ridnour Lisa A. , Murray Margaret C. , Tazzari Valerio , Sparatore Anna , Del Soldato Piero , Hines Harry B. , Glynn Sharon A. , Ambs Stefan , Wink David A.
Published: April 2023

PDF file - 94K
Supplementary Figure S3 from Intravital FLIM-FRET Imaging Reveals Dasatinib-Induced Spatial Control of Src in Pancreatic Cancer
Authors: Nobis Max , McGhee Ewan J. , Morton Jennifer P. , Schwarz Juliane P. , Karim Saadia A. , Quinn Jean , Edward Mike , Campbell Andrew D. , McGarry Lynn C. , Evans T.R. Jeffry , Brunton Valerie G. , Frame Margaret C. , Carragher Neil O. , Wang Yingxiao , Sansom Owen J. , Timpson Paul , Anderson Kurt I.
Published: April 2023

Supplementary Figure S3 - PDF file 150K, SHG identification of invasive border versus tumour centre
Supplementary Figure 4 from GF-15, a Novel Inhibitor of Centrosomal Clustering, Suppresses Tumor Cell Growth In Vitro and In Vivo
Authors: Raab Marc S. , Breitkreutz Iris , Anderhub Simon , Rønnest Mads H. , Leber Blanka , Larsen Thomas O. , Weiz Ludmila , Konotop Gleb , Hayden Patrick J. , Podar Klaus , Fruehauf Johannes , Nissen Felix , Mier Walter , Haberkorn Uwe , Ho Anthony D. , Goldschmidt Hartmut , Anderson Kenneth C. , Clausen Mads H. , Krämer Alwin
Published: April 2023

PDF file - 69K, GF-15 decreases tumor growth in a HT29 xenograft mouse model
Supplementary Figure 1 from Cytomegalovirus Infection Leads to Pleomorphic Rhabdomyosarcomas in Trp53+/− Mice
Authors: Price Richard L. , Bingmer Katherine , Harkins Lualhati , Iwenofu O. Hans , Kwon Chang-Hyuk , Cook Charles , Pelloski Christopher , Chiocca E. Antonio
Published: April 2023

PDF file - 60K, Analysis for MCMV DNA and RNA in muscle and connective tissue in mice infected with MCMV at 4 weeks of age.
Supplementary Table 3 from An Integrated Genomic Screen Identifies LDHB as an Essential Gene for Triple-Negative Breast Cancer
Authors: McCleland Mark L. , Adler Adam S. , Shang Yonglei , Hunsaker Thomas , Truong Tom , Peterson David , Torres Eric , Li Li , Haley Benjamin , Stephan Jean-Philippe , Belvin Marcia , Hatzivassiliou Georgia , Blackwood Elizabeth M. , Corson Laura , Evangelista Marie , Zha Jiping , Firestein Ron
Published: April 2023

XLSX file - 25K, RNAi optimization and screening conditions
Supplementary Methods from Bone Marrow Stromal Cells Create a Permissive Microenvironment for Myeloma Development: A New Stromal Role for Wnt Inhibitor Dkk1
Authors: Fowler Jessica A. , Mundy Gregory R. , Lwin Seint T. , Edwards Claire M.
Published: April 2023

PDF file - 66K
Supplementary Table 1 from An Integrated Genomic Screen Identifies LDHB as an Essential Gene for Triple-Negative Breast Cancer
Authors: McCleland Mark L. , Adler Adam S. , Shang Yonglei , Hunsaker Thomas , Truong Tom , Peterson David , Torres Eric , Li Li , Haley Benjamin , Stephan Jean-Philippe , Belvin Marcia , Hatzivassiliou Georgia , Blackwood Elizabeth M. , Corson Laura , Evangelista Marie , Zha Jiping , Firestein Ron
Published: April 2023

XLSX file - 31K, Results from the RNAi screen and identification of hits
Supplementary Figures 1-8 from Bone Marrow Stromal Cells Create a Permissive Microenvironment for Myeloma Development: A New Stromal Role for Wnt Inhibitor Dkk1
Authors: Fowler Jessica A. , Mundy Gregory R. , Lwin Seint T. , Edwards Claire M.
Published: April 2023

PDF file - 6.4MB
Supplementary Materials and Methods from Antitumor Activity of a Humanized, Bivalent Immunotoxin Targeting Fn14-Positive Solid Tumors
Authors: Zhou Hong , Hittelman Walter N. , Yagita Hideo , Cheung Lawrence H. , Martin Stuart S. , Winkles Jeffrey A. , Rosenblum Michael G.
Published: April 2023

Supplementary Materials and Methods - PDF file 76K, Additional experimental procedures including Fluorescence dye labeling and Apoptosis Assay
Supplementary Figures S1-S4 from Antitumor Activity of a Humanized, Bivalent Immunotoxin Targeting Fn14-Positive Solid Tumors
Authors: Zhou Hong , Hittelman Walter N. , Yagita Hideo , Cheung Lawrence H. , Martin Stuart S. , Winkles Jeffrey A. , Rosenblum Michael G.
Published: April 2023

Supplementary Figures S1-S4 - PDF file 821K, confocal immunofluorescence microscopy, cell viability assay by crystal violet staining and apoptosis assay (s1); effect of hsgz combined with various chemotherapeutic agents on mda-mb-435 melanoma cells (s2); labeling hsgz with irdye 800 cw & representative nir and bli images & the tissue-to-muscle ratio (s3); immunofluorescence staining of mda-mb-231/luc tumor samples for rgel colocalization (s4)
Supplementary Table 1 from STAT5 Is Crucial to Maintain Leukemic Stem Cells in Acute Myelogenous Leukemias Induced by MOZ-TIF2
Authors: Tam Winnie F. , Hähnel Patricia S. , Schüler Andrea , Lee Benjamin H. , Okabe Rachel , Zhu Nan , Pante Saskia V. , Raffel Glen , Mercher Thomas , Wernig Gerlinde , Bockamp Ernesto , Sasca Daniel , Kreft Andreas , Robinson Gertraud W. , Hennighausen Lothar , Gilliland D. Gary , Kindler Thomas
Published: April 2023

PDF file - 66K, phenotype of leukemic mice (liver, spleen weight, etc.)
Supplementary Figure 4 from STAT5 Is Crucial to Maintain Leukemic Stem Cells in Acute Myelogenous Leukemias Induced by MOZ-TIF2
Authors: Tam Winnie F. , Hähnel Patricia S. , Schüler Andrea , Lee Benjamin H. , Okabe Rachel , Zhu Nan , Pante Saskia V. , Raffel Glen , Mercher Thomas , Wernig Gerlinde , Bockamp Ernesto , Sasca Daniel , Kreft Andreas , Robinson Gertraud W. , Hennighausen Lothar , Gilliland D. Gary , Kindler Thomas
Published: April 2023

PDF file - 190K, JAK2-inhibitor trial (proliferation assay, colony assay)
Supplementary Figure 1 from STAT5 Is Crucial to Maintain Leukemic Stem Cells in Acute Myelogenous Leukemias Induced by MOZ-TIF2
Authors: Tam Winnie F. , Hähnel Patricia S. , Schüler Andrea , Lee Benjamin H. , Okabe Rachel , Zhu Nan , Pante Saskia V. , Raffel Glen , Mercher Thomas , Wernig Gerlinde , Bockamp Ernesto , Sasca Daniel , Kreft Andreas , Robinson Gertraud W. , Hennighausen Lothar , Gilliland D. Gary , Kindler Thomas
Published: April 2023

PDF file - 58K, Colony assay with and without cytokines
Supplementary Methods from Real-time Monitoring of In Vivo Acute Necrotic Cancer Cell Death Induced by Near Infrared Photoimmunotherapy Using Fluorescence Lifetime Imaging
Authors: Nakajima Takahito , Sano Kohei , Mitsunaga Makoto , Choyke Peter L. , Kobayashi Hisataka
Published: April 2023

PDF file - 85K
Supplementary Figure 5 from Real-time Monitoring of In Vivo Acute Necrotic Cancer Cell Death Induced by Near Infrared Photoimmunotherapy Using Fluorescence Lifetime Imaging
Authors: Nakajima Takahito , Sano Kohei , Mitsunaga Makoto , Choyke Peter L. , Kobayashi Hisataka
Published: April 2023

PDF file - 93K, Verification of the expected effects of p65 or I�B� overexpression on NFkappaB transcriptional activity in breast cancer cells
Supplementary Figure 4 from Real-time Monitoring of In Vivo Acute Necrotic Cancer Cell Death Induced by Near Infrared Photoimmunotherapy Using Fluorescence Lifetime Imaging
Authors: Nakajima Takahito , Sano Kohei , Mitsunaga Makoto , Choyke Peter L. , Kobayashi Hisataka
Published: April 2023

PDF file - 45K, ABT-888 reduces levels of the NF�B regulated protein cMyc
Supplementary Figure 2 from Real-time Monitoring of In Vivo Acute Necrotic Cancer Cell Death Induced by Near Infrared Photoimmunotherapy Using Fluorescence Lifetime Imaging
Authors: Nakajima Takahito , Sano Kohei , Mitsunaga Makoto , Choyke Peter L. , Kobayashi Hisataka
Published: April 2023

PDF file - 25K, Homologous recombination repair capacity in MCF7 cells
Supplementary Figure 2 from Chromatin Remodeling Underlies the Senescence-Associated Secretory Phenotype of Tumor Stromal Fibroblasts That Supports Cancer Progression
Authors: Pazolli Ermira , Alspach Elise , Milczarek Agnieszka , Prior Julie , Piwnica-Worms David , Stewart Sheila A.
Published: April 2023

PDF file - 1.2MB
Supplementary Figure 2 from The Mixed Lineage Leukemia (MLL) Fusion–Associated Gene AF4 Promotes CD133 Transcription
Authors: Mak Anthony B. , Nixon Allison M.L. , Moffat Jason
Published: April 2023

PDF file - 126K
Supplementary Table 6 from DNA Methylation Biomarkers Offer Improved Diagnostic Efficiency in Lung Cancer
Authors: Nikolaidis Georgios , Raji Olaide Y. , Markopoulou Soultana , Gosney John R. , Bryan Julie , Warburton Chris , Walshaw Martin , Sheard John , Field John K. , Liloglou Triantafillos
Published: April 2023

PDF file - 37K, Comparison of internal classification and prediction accuracies and cross-validation consistency of Best multi-marker MDR models identified using the training dataset
Supplementary Figure 4 from Inhibiting Interactions of Lysine Demethylase LSD1 with Snail/Slug Blocks Cancer Cell Invasion
Authors: Ferrari-Amorotti Giovanna , Fragliasso Valentina , Esteki Roza , Prudente Zelia , Soliera Angela Rachele , Cattelani Sara , Manzotti Gloria , Grisendi Giulia , Dominici Massimo , Pieraccioli Marco , Raschellà Giuseppe , Chiodoni Claudia , Colombo Mario Paolo , Calabretta Bruno
Published: April 2023

PDF file - 146K, Effect of TAT-SNAG peptide on migration, invasion and proliferation of p53-null HCT116 cells
Supplementary Figure Legends 1-2 from A Retinoic Acid—Rich Tumor Microenvironment Provides Clonal Survival Cues for Tumor-Specific CD8+ T Cells
Authors: Guo Yanxia , Pino-Lagos Karina , Ahonen Cory A. , Bennett Kathy A. , Wang Jinshan , Napoli Joseph L. , Blomhoff Rune , Sockanathan Shanthini , Chandraratna Roshantha A. , Dmitrovsky Ethan , Turk Mary Jo , Noelle Randolph J.
Published: April 2023

PDF file - 113K
Supplementary Methods from An Integrated Genome-Wide Approach to Discover Tumor-Specific Antigens as Potential Immunologic and Clinical Targets in Cancer
Authors: Xu Qing-Wen , Zhao Wei , Wang Yue , Sartor Maureen A. , Han Dong-Mei , Deng Jixin , Ponnala Rakesh , Yang Jiang-Ying , Zhang Qing-Yun , Liao Guo-Qing , Qu Yi-Mei , Li Lu , Liu Fang-Fang , Zhao Hong-Mei , Yin Yan-Hui , Chen Wei-Feng , Zhang Yu , Wang Xiao-Song
Published: April 2023

PDF file - 179K, Includes HEPA analysis data, Calculation of DP score, and supplementary references
Supplementary Methods, Tables 1-3, Figures 1-4 from Hedgehog Overexpression Is Associated with Stromal Interactions and Predicts for Poor Outcome in Breast Cancer
Authors: O'Toole Sandra A. , Machalek Dorothy A. , Shearer Robert F. , Millar Ewan K.A. , Nair Radhika , Schofield Peter , McLeod Duncan , Cooper Caroline L. , McNeil Catriona M. , McFarland Andrea , Nguyen Akira , Ormandy Christopher J. , Qiu Min Ru , Rabinovich Brian , Martelotto Luciano G. , Vu Duc , Hannigan Gregory E. , Musgrove Elizabeth A. , Christ Daniel , Sutherland Robert L. , Watkins D. Neil , Swarbrick Alexander
Published: April 2023

Supplementary Methods, Tables 1-3, Figures 1-4 from Hedgehog Overexpression Is Associated with Stromal Interactions and Predicts for Poor Outcome in Breast Cancer
Supplementary Figures 1-4 from Methylome Profiling Reveals Distinct Alterations in Phenotypic and Mutational Subgroups of Myeloproliferative Neoplasms
Authors: Nischal Sangeeta , Bhattacharyya Sanchari , Christopeit Maximilian , Yu Yiting , Zhou Li , Bhagat Tushar D. , Sohal Davendra , Will Britta , Mo Yongkai , Suzuki Masako , Pardanani Animesh , McDevitt Michael , Maciejewski Jaroslaw P. , Melnick Ari M. , Greally John M. , Steidl Ulrich , Moliterno Alison , Verma Amit
Published: April 2023

PDF file - 646K, Supp Fig 1: Pathways involved by hypermethylated genes in PV / ET. Supp Fig 2: Validation of HELP assay findings by MassArray bisulfite analysis Supp Fig 3: Pathways involved by genes that are overexpressed and hypomethylated at promoters by the Jak2V617F mutant. Supp Fig 4: Jak2V617F mutation does not have significant effects on global DNA methylation profiles
Supplementary Figure 6 from Cisplatin Selects for Multidrug-Resistant CD133+ Cells in Lung Adenocarcinoma by Activating Notch Signaling
Authors: Liu Yu-Peng , Yang Chih-Jen , Huang Ming-Shyan , Yeh Chi-Tai , Wu Alexander T.H. , Lee Yu-Cheng , Lai Tsung-Ching , Lee Chien-Hsin , Hsiao Ya-Wen , Lu Jean , Shen Chia-Ning , Lu Pei-Jung , Hsiao Michael
Published: April 2023

PDF file - 342K, Inhibition of cisplatin-induced enrichment of CD133+ cells by Notch1 knockdown
Supplementary Table 1, Figures 1-6 from “OA02” Peptide Facilitates the Precise Targeting of Paclitaxel-Loaded Micellar Nanoparticles to Ovarian Cancer In Vivo
Authors: Xiao Kai , Li Yuanpei , Lee Joyce S. , Gonik Abby M. , Dong Tiffany , Fung Gabriel , Sanchez Eduardo , Xing Li , Cheng Holland R. , Luo Juntao , Lam Kit S.
Published: April 2023

PDF file - 539K
Supplementary Figure 2 from Cisplatin Selects for Multidrug-Resistant CD133+ Cells in Lung Adenocarcinoma by Activating Notch Signaling
Authors: Liu Yu-Peng , Yang Chih-Jen , Huang Ming-Shyan , Yeh Chi-Tai , Wu Alexander T.H. , Lee Yu-Cheng , Lai Tsung-Ching , Lee Chien-Hsin , Hsiao Ya-Wen , Lu Jean , Shen Chia-Ning , Lu Pei-Jung , Hsiao Michael
Published: April 2023

PDF file - 287K, Cisplatin-induced enrichment of CD133+ cells
Supplementary Figure 8 from Roles for Endothelin Receptor B and BCL2A1 in Spontaneous CNS Metastasis of Melanoma
Authors: Cruz-Muñoz William , Jaramillo Maria L. , Man Shan , Xu Ping , Banville Myriam , Collins Catherine , Nantel Andre , Francia Giulio , Morgan Sherif S. , Cranmer Lee D. , O'Connor-McCourt Maureen D. , Kerbel Robert S.
Published: April 2023

PDF file - 25K, Examination of the role of BCL2a1 in intracranial tumor growth
Supplementary Table 4 from Molecular Subsets of Mantle Cell Lymphoma Defined by the IGHV Mutational Status and SOX11 Expression Have Distinct Biologic and Clinical Features
Authors: Navarro Alba , Clot Guillem , Royo Cristina , Jares Pedro , Hadzidimitriou Anastasia , Agathangelidis Andreas , Bikos Vasilis , Darzentas Nikos , Papadaki Theodora , Salaverria Itziar , Pinyol Magda , Puig Xavier , Palomero Jara , Vegliante Maria Carmela , Amador Virgina , Martinez-Trillos Alejandra , Stefancikova Lenka , Wiestner Adrian , Wilson Wyndham , Pott Christiane , Calasanz Maria Jose , Trim Nicola , Erber Wendy , Sander Birgitta , Ott German , Rosenwald Andreas , Colomer Dolors , Giné Eva , Siebert Reiner , Lopez-Guillermo Armando , Stamatopoulos Kostas , Beà Sílvia , Campo Elías
Published: April 2023

PDF file - 105K, Biological processes and genes differentially expressed among M-MCL (M) and U-MCL (U) validated genes by qPCR
Supplementary Figure 5 from Roles for Endothelin Receptor B and BCL2A1 in Spontaneous CNS Metastasis of Melanoma
Authors: Cruz-Muñoz William , Jaramillo Maria L. , Man Shan , Xu Ping , Banville Myriam , Collins Catherine , Nantel Andre , Francia Giulio , Morgan Sherif S. , Cranmer Lee D. , O'Connor-McCourt Maureen D. , Kerbel Robert S.
Published: April 2023

PDF file - 39K, Examination of levels of gene expression in modified (induced overexpression and knockdown) melanoma cell lines
Supplementary Figure 4 from Roles for Endothelin Receptor B and BCL2A1 in Spontaneous CNS Metastasis of Melanoma
Authors: Cruz-Muñoz William , Jaramillo Maria L. , Man Shan , Xu Ping , Banville Myriam , Collins Catherine , Nantel Andre , Francia Giulio , Morgan Sherif S. , Cranmer Lee D. , O'Connor-McCourt Maureen D. , Kerbel Robert S.
Published: April 2023

PDF file - 158K, Comparison of EDRNA vs. EDNRB expression and EDNRB immunostaining in clinical samples of primary melanoma and melanoma metastases (lymph node, brain and lung)
Supplementary Table 2 from Molecular Subsets of Mantle Cell Lymphoma Defined by the IGHV Mutational Status and SOX11 Expression Have Distinct Biologic and Clinical Features
Authors: Navarro Alba , Clot Guillem , Royo Cristina , Jares Pedro , Hadzidimitriou Anastasia , Agathangelidis Andreas , Bikos Vasilis , Darzentas Nikos , Papadaki Theodora , Salaverria Itziar , Pinyol Magda , Puig Xavier , Palomero Jara , Vegliante Maria Carmela , Amador Virgina , Martinez-Trillos Alejandra , Stefancikova Lenka , Wiestner Adrian , Wilson Wyndham , Pott Christiane , Calasanz Maria Jose , Trim Nicola , Erber Wendy , Sander Birgitta , Ott German , Rosenwald Andreas , Colomer Dolors , Giné Eva , Siebert Reiner , Lopez-Guillermo Armando , Stamatopoulos Kostas , Beà Sílvia , Campo Elías
Published: April 2023

PDF file - 75K, IGHV, IGHD and IGHJ gene frequencies according to mutational status
Supplementary Table 1 from Molecular Subsets of Mantle Cell Lymphoma Defined by the IGHV Mutational Status and SOX11 Expression Have Distinct Biologic and Clinical Features
Authors: Navarro Alba , Clot Guillem , Royo Cristina , Jares Pedro , Hadzidimitriou Anastasia , Agathangelidis Andreas , Bikos Vasilis , Darzentas Nikos , Papadaki Theodora , Salaverria Itziar , Pinyol Magda , Puig Xavier , Palomero Jara , Vegliante Maria Carmela , Amador Virgina , Martinez-Trillos Alejandra , Stefancikova Lenka , Wiestner Adrian , Wilson Wyndham , Pott Christiane , Calasanz Maria Jose , Trim Nicola , Erber Wendy , Sander Birgitta , Ott German , Rosenwald Andreas , Colomer Dolors , Giné Eva , Siebert Reiner , Lopez-Guillermo Armando , Stamatopoulos Kostas , Beà Sílvia , Campo Elías
Published: April 2023

PDF file - 105K, Normal B-cell types signatures used in the GSEA analysis
Supplementary Figures 1 - 4 from Efficacy and Mechanism-of-Action of a Novel Superagonist Interleukin-15: Interleukin-15 Receptor αSu/Fc Fusion Complex in Syngeneic Murine Models of Multiple Myeloma
Authors: Xu Wenxin , Jones Monica , Liu Bai , Zhu Xiaoyun , Johnson Christopher B. , Edwards Ana C. , Kong Lin , Jeng Emily K. , Han Kaiping , Marcus Warren D. , Rubinstein Mark P. , Rhode Peter R. , Wong Hing C.
Published: April 2023

PDF file - 304K, Growth pattern of 5T33P murine myeloma cells in BM of C57BL/6NHsd mice (S1); ALT-803 activity in murine myeloma models (S2); 5T33P cell apoptosis is not induce culturing with ALT-803 or IFNy (S3); Gating strategy and analysis of donors (S4).
Supplementary Methods from Vaccination with Antigen-Transfected, NKT Cell Ligand–Loaded, Human Cells Elicits Robust In Situ Immune Responses by Dendritic Cells
Authors: Shimizu Kanako , Mizuno Takuya , Shinga Jun , Asakura Miki , Kakimi Kazuhiro , Ishii Yasuyuki , Masuda Kenichi , Maeda Tomoji , Sugahara Hidetoshi , Sato Yusuke , Matsushita Hirokazu , Nishida Keigo , Hanada Kenichi , Dorrie Jan , Schaft Niels , Bickham Kara , Koike Hisashi , Ando Tsuyoshi , Nagai Ryozo , Fujii Shin-ichiro
Published: April 2023

PDF file - 118K
Supplementary Figure 1 from NEDD9 Depletion Destabilizes Aurora A Kinase and Heightens the Efficacy of Aurora A Inhibitors: Implications for Treatment of Metastatic Solid Tumors
Authors: Ice Ryan J. , McLaughlin Sarah L. , Livengood Ryan H. , Culp Mark V. , Eddy Erik R. , Ivanov Alexey V. , Pugacheva Elena N.
Published: April 2023

Supplementary Figure 1 - PDF file 135K
Supplementary Table 1 from Novel HSP90 Inhibitor NVP-HSP990 Targets Cell-Cycle Regulators to Ablate Olig2-Positive Glioma Tumor–Initiating Cells
Authors: Fu Jun , Koul Dimpy , Yao Jun , Wang Shuzhen , Yuan Ying , Colman Howard , Sulman Erik. P. , Lang Frederick. F. , Alfred Yung W.K.
Published: April 2023

XLSX file - 12K, Kaplan-Meier GSC20.
Supplementary Figures 1 - 5 from Novel HSP90 Inhibitor NVP-HSP990 Targets Cell-Cycle Regulators to Ablate Olig2-Positive Glioma Tumor–Initiating Cells
Authors: Fu Jun , Koul Dimpy , Yao Jun , Wang Shuzhen , Yuan Ying , Colman Howard , Sulman Erik. P. , Lang Frederick. F. , Alfred Yung W.K.
Published: April 2023

PDF file - 1108K, HSP990's effect on client proteins, Self renewal. Gene Signature associated with HSP990 response.
Supplementary Methods, Figure Legends 1-4 from IFNβ Produced by TLR4-Activated Tumor Cells Is Involved in Improving the Antitumoral Immune Response
Authors: Núñez Nicolás Gonzalo , Andreani Virginia , Crespo María Inés , Nocera David Andrés , Breser María Laura , Morón Gabriel , Dejager Lien , Libert Claude , Rivero Virginia , Maccioni Mariana
Published: April 2023

PDF file - 110K
Supplementary Figure 2 from PDGF Receptor Alpha Is an Alternative Mediator of Rapamycin-Induced Akt Activation: Implications for Combination Targeted Therapy of Synovial Sarcoma
Authors: Ho Alan L. , Vasudeva Shyamprasad Deraje , Laé Marick , Saito Tsuyoshi , Barbashina Violetta , Antonescu Cristina R. , Ladanyi Marc , Schwartz Gary K.
Published: April 2023

PDF file - 210K, RTK antibody array analysis in SYO-1 cells treated with vehicle or 1 nM rapamycin for 6 hours; RTK array performed upon SYO-1 cells after treatment with vehicle or rapamycin
Supplementary Figure Legends 1-5 from PNUTS Functions as a Proto-Oncogene by Sequestering PTEN
Authors: Kavela Sridhar , Shinde Swapnil R. , Ratheesh Raman , Viswakalyan Kotapalli , Bashyam Murali D. , Gowrishankar Swarnalata , Vamsy Mohana , Pattnaik Sujit , Rao Subramanyeshwar , Sastry Regulagadda A. , Srinivasulu Mukta , Chen Junjie , Maddika Subbareddy
Published: April 2023

PDF file - 88K
Supplementary Figure 2 from NLRR1 Enhances EGF-Mediated MYCN Induction in Neuroblastoma and Accelerates Tumor Growth In Vivo
Authors: Hossain Shamim , Takatori Atsushi , Nakamura Yohko , Suenaga Yusuke , Kamijo Takehiko , Nakagawara Akira
Published: April 2023

PDF file, 69K, siRNA-mediated knockdown of Sp1 reduces endogenous expression of MYCN. Sp1 knock down was confirmed by two specific si-RNAs in cells. Knock down of Sp1 results in the reduction of MYCN expression. Cell proliferation is suppressed in cells after Sp1 knock down.
Supplementary Table 7 from Characterization of Gene–Environment Interactions for Colorectal Cancer Susceptibility Loci
Authors: Hutter Carolyn M. , Chang-Claude Jenny , Slattery Martha L. , Pflugeisen Bethann M. , Lin Yi , Duggan David , Nan Hongmei , Lemire Mathieu , Rangrej Jagadish , Figueiredo Jane C. , Jiao Shuo , Harrison Tabitha A. , Liu Yan , Chen Lin S. , Stelling Deanna L. , Warnick Greg S. , Hoffmeister Michael , Küry Sébastien , Fuchs Charles S. , Giovannucci Edward , Hazra Aditi , Kraft Peter , Hunter David J. , Gallinger Steven , Zanke Brent W. , Brenner Hermann , Frank Bernd , Ma Jing , Ulrich Cornelia M. , White Emily , Newcomb Polly A. , Kooperberg Charles , LaCroix Andrea Z. , Prentice Ross L. , Jackson Rebecca D. , Schoen Robert E. , Chanock Stephen J. , Berndt Sonja I. , Hayes Richard B. , Caan Bette J. , Potter John D. , Hsu Li , Bézieau Stéphane , Chan Andrew T. , Hudson Thomas J. , Peters Ulrike
Published: April 2023

PDF file - 96K, All GxE interactions stratified by cancer site.
Supplementary Figures 1-5, Table 1 from In Vivo Regulation of TGF-β by R-Ras2 Revealed through Loss of the RasGAP Protein NF1
Authors: Patmore Deanna M. , Welch Sara , Fulkerson Patricia C. , Wu Jianqiang , Choi Kwangmin , Eaves David , Kordich Jennifer J. , Collins Margaret H. , Cripe Timothy P. , Ratner Nancy
Published: April 2023

PDF file - 488K, Insertion into the mouse TC21 gene causes a null allele. Supplemental Table 1. Loss of TC21 partially rescues Nf1 mutant embryonic lethality. Supplemental Figure 2: Loss of TC21 decreases the survival of NPCis mice by increasing brain tumors. Supplemental Figure 3. Cell death in spheres and TGFbeta1 expression in sciatic nerves and neurofibromas. Supplemental Figure 4: Nf1-/- DRGs and spheres express high levels of phospho-AKT but not phospho-SMAD2/3. Supplemental Figure 5: Expression of TGFbeta ligands and receptors in mouse MPNST and human MPNST cell lines
Supplementary Table 2 from Characterization of Gene–Environment Interactions for Colorectal Cancer Susceptibility Loci
Authors: Hutter Carolyn M. , Chang-Claude Jenny , Slattery Martha L. , Pflugeisen Bethann M. , Lin Yi , Duggan David , Nan Hongmei , Lemire Mathieu , Rangrej Jagadish , Figueiredo Jane C. , Jiao Shuo , Harrison Tabitha A. , Liu Yan , Chen Lin S. , Stelling Deanna L. , Warnick Greg S. , Hoffmeister Michael , Küry Sébastien , Fuchs Charles S. , Giovannucci Edward , Hazra Aditi , Kraft Peter , Hunter David J. , Gallinger Steven , Zanke Brent W. , Brenner Hermann , Frank Bernd , Ma Jing , Ulrich Cornelia M. , White Emily , Newcomb Polly A. , Kooperberg Charles , LaCroix Andrea Z. , Prentice Ross L. , Jackson Rebecca D. , Schoen Robert E. , Chanock Stephen J. , Berndt Sonja I. , Hayes Richard B. , Caan Bette J. , Potter John D. , Hsu Li , Bézieau Stéphane , Chan Andrew T. , Hudson Thomas J. , Peters Ulrike
Published: April 2023

PDF file - 55K, Study specific definitions of regular aspirin/NSAID use.
Supplementary Table 1 from Hypoxia-Induced Gene Expression in Chemoradioresistant Cervical Cancer Revealed by Dynamic Contrast-Enhanced MRI
Authors: Halle Cathinka , Andersen Erlend , Lando Malin , Aarnes Eva-Katrine , Hasvold Grete , Holden Marit , Syljuåsen Randi G. , Sundfør Kolbein , Kristensen Gunnar B. , Holm Ruth , Malinen Eirik , Lyng Heidi
Published: April 2023

PDF file - 30K, Patient and tumor characteristics
Supplementary Figure S6 from Radioresistant Cancer Cells Can Be Conditioned to Enter Senescence by mTOR Inhibition
Authors: Nam Hae Yun , Han Myung Woul , Chang Hyo Won , Lee Yoon Sun , Lee Myungjin , Lee Hyang Ju , Lee Byoung Wook , Lee Hee Jin , Lee Kyung Eun , Jung Min Kyo , Jeon Hyesung , Choi Seung-Ho , Park Neung Hwa , Kim Sang Yoon , Kim Seong Who
Published: April 2023

Supplementary Figure S6 - PDF file 499K, Inhibition of the mTOR pathway induces cellular senescence in irradiated U-87 cancer cells
Supplementary Figure Legends from Radioresistant Cancer Cells Can Be Conditioned to Enter Senescence by mTOR Inhibition
Authors: Nam Hae Yun , Han Myung Woul , Chang Hyo Won , Lee Yoon Sun , Lee Myungjin , Lee Hyang Ju , Lee Byoung Wook , Lee Hee Jin , Lee Kyung Eun , Jung Min Kyo , Jeon Hyesung , Choi Seung-Ho , Park Neung Hwa , Kim Sang Yoon , Kim Seong Who
Published: April 2023

Supplementary Figure Legends - PDF file 151K, Legend for Supplementary Figures S1-S6
Supplementary Figure 2 from A Survivin-Associated Adaptive Response in Radiation Therapy
Authors: Grdina David J. , Murley Jeffrey S. , Miller Richard C. , Mauceri Helena J. , Sutton Harold G. , Li Jian Jian , Woloschak Gayle E. , Weichselbaum Ralph R.
Published: April 2023

PDF - 53K, The lack of an effect of changes on SOD2 levels and associated cell survival.
Supplementary Figure 1 from A Survivin-Associated Adaptive Response in Radiation Therapy
Authors: Grdina David J. , Murley Jeffrey S. , Miller Richard C. , Mauceri Helena J. , Sutton Harold G. , Li Jian Jian , Woloschak Gayle E. , Weichselbaum Ralph R.
Published: April 2023

PDF - 57K, The effect of treatment on SOD2 activity.
Supplementary Figure 1 from Reciprocal Metabolic Reprogramming through Lactate Shuttle Coordinately Influences Tumor-Stroma Interplay
Authors: Fiaschi Tania , Marini Alberto , Giannoni Elisa , Taddei Maria Letizia , Gandellini Paolo , De Donatis Alina , Lanciotti Michele , Serni Sergio , Cirri Paolo , Chiarugi Paola
Published: April 2023

PDF file - 54K, The Biochemical Recurrence (BCR) free survival was estimated using the Kaplan-Meier method; In figure is represented the BCR free survival curve of patients treated with Radical Prostatectomy for Prostate Cancer. Among all, only one patients presented BCR at ten months, while another one had no PSA decline after surgery. The BCR free survival rates of our study population were 85,5% and 68,6% at one and sixteen months, respectively.
Supplementary Figure 10 from HMGA2 Is a Driver of Tumor Metastasis
Authors: Morishita Asahiro , Zaidi M. Raza , Mitoro Akira , Sankarasharma Devipriya , Szabolcs Matthias , Okada Yasunori , D'Armiento Jeanine , Chada Kiran
Published: April 2023

Supplementary Figure 10 - PDF file 84K, HMGA2 mRNA expression in MCF7 and MDA-MB231 human breast cancer cells treated with TGFBeta 1 as detected by qRT-PCR
Supplementary Figure 3 from Fibulin-3 Promotes Glioma Growth and Resistance through a Novel Paracrine Regulation of Notch Signaling
Authors: Hu Bin , Nandhu Mohan S. , Sim Hosung , Agudelo-Garcia Paula A. , Saldivar Joshua C. , Dolan Claire E. , Mora Maria E. , Nuovo Gerard J. , Cole Susan E. , Viapiano Mariano S.
Published: April 2023

PDF file - 511K, Conditional knockdown of fibulin-3
Supplementary Figure 5 from Strain-Specific Variation in Murine Natural Killer Gene Complex Contributes to Differences in Immunosurveillance for Urethane-Induced Lung Cancer
Authors: Kreisel Daniel , Gelman Andrew E. , Higashikubo Ryuji , Lin Xue , Vikis Haris G. , White J. Michael , Toth Kelsey A. , Deshpande Charuhas , Carreno Beatriz M. , You Ming , Taffner Samantha M. , Yokoyama Wayne M. , Bui Jack D. , Schreiber Robert D. , Krupnick Alexander S.
Published: April 2023

PDF file - 76K, Microsatellite mapping of the 129/SvEv.B6-NKC Rag2-/- mouse
Supplementary Table 2 from BMP4 Administration Induces Differentiation of CD133+ Hepatic Cancer Stem Cells, Blocking Their Contributions to Hepatocellular Carcinoma
Authors: Zhang Lixing , Sun Hefen , Zhao Fangyu , Lu Ping , Ge Chao , Li Hong , Hou Helei , Yan Mingxia , Chen Taoyang , Jiang Guoping , Xie Haiyang , Cui Ying , Huang Xiaowu , Fan Jia , Yao Ming , Li Jinjun
Published: April 2023

PDF file - 47K, Sequences of primers used in this study
Supplementary Figure 8 from Macrophage-Induced Tumor Angiogenesis Is Regulated by the TSC2–mTOR Pathway
Authors: Chen Wei , Ma Tao , Shen Xu-ning , Xia Xue-feng , Xu Guo-dong , Bai Xue-li , Liang Ting-bo
Published: April 2023

PDF file - 2.7MB
Supplementary Figure 7 from Macrophage-Induced Tumor Angiogenesis Is Regulated by the TSC2–mTOR Pathway
Authors: Chen Wei , Ma Tao , Shen Xu-ning , Xia Xue-feng , Xu Guo-dong , Bai Xue-li , Liang Ting-bo
Published: April 2023

PDF file - 6.3MB
Supplementary Figure 4 from RhoB Differentially Controls Akt Function in Tumor Cells and Stromal Endothelial Cells during Breast Tumorigenesis
Authors: Kazerounian Shiva , Gerald Damien , Huang Minzhou , Chin Y. Rebecca , Udayakumar Durga , Zheng Ningning , O'Donnell Rebekah K. , Perruzzi Carole , Mangiante Lee , Pourat Jacob , Phung Thuy L. , Bravo-Nuevo Arturo , Shechter Sharon , McNamara Stephanie , DuHadaway James B. , Kocher Olivier N. , Brown Lawrence F. , Toker Alex , Prendergast George C. , Benjamin Laura E.
Published: April 2023

PDF file - 34K, Level of expression of mRNA of different genes in RhoB+/+ and RhoB-/- mouse tumor cells
Supplementary Figure 3 from RhoB Differentially Controls Akt Function in Tumor Cells and Stromal Endothelial Cells during Breast Tumorigenesis
Authors: Kazerounian Shiva , Gerald Damien , Huang Minzhou , Chin Y. Rebecca , Udayakumar Durga , Zheng Ningning , O'Donnell Rebekah K. , Perruzzi Carole , Mangiante Lee , Pourat Jacob , Phung Thuy L. , Bravo-Nuevo Arturo , Shechter Sharon , McNamara Stephanie , DuHadaway James B. , Kocher Olivier N. , Brown Lawrence F. , Toker Alex , Prendergast George C. , Benjamin Laura E.
Published: April 2023

PDF file - 54K, RhoB is downregulated in MCF7 cells by antisense oligonucleotides
Supplementary Figure 2 from Macrophage-Induced Tumor Angiogenesis Is Regulated by the TSC2–mTOR Pathway
Authors: Chen Wei , Ma Tao , Shen Xu-ning , Xia Xue-feng , Xu Guo-dong , Bai Xue-li , Liang Ting-bo
Published: April 2023

PDF file - 1.6MB
Supplementary Figure 1 from Macrophage-Induced Tumor Angiogenesis Is Regulated by the TSC2–mTOR Pathway
Authors: Chen Wei , Ma Tao , Shen Xu-ning , Xia Xue-feng , Xu Guo-dong , Bai Xue-li , Liang Ting-bo
Published: April 2023

PDF file - 671K
Supplementary Figures 1-6 from Combining Histone Deacetylase Inhibitor Vorinostat with Aurora Kinase Inhibitors Enhances Lymphoma Cell Killing with Repression of c-Myc, hTERT, and microRNA Levels
Authors: Kretzner Leo , Scuto Anna , Dino Pamela M. , Kowolik Claudia M. , Wu Jun , Ventura Patrick , Jove Richard , Forman Stephen J. , Yen Yun , Kirschbaum Mark H.
Published: April 2023

Supplementary Figures 1-6 from Combining Histone Deacetylase Inhibitor Vorinostat with Aurora Kinase Inhibitors Enhances Lymphoma Cell Killing with Repression of c-Myc, hTERT, and microRNA Levels
Supplementary Figure Legends for Table 1 and Figures 1-6 from Combining Histone Deacetylase Inhibitor Vorinostat with Aurora Kinase Inhibitors Enhances Lymphoma Cell Killing with Repression of c-Myc, hTERT, and microRNA Levels
Authors: Kretzner Leo , Scuto Anna , Dino Pamela M. , Kowolik Claudia M. , Wu Jun , Ventura Patrick , Jove Richard , Forman Stephen J. , Yen Yun , Kirschbaum Mark H.
Published: April 2023

Supplementary Figure Legends for Table 1 and Figures 1-6 from Combining Histone Deacetylase Inhibitor Vorinostat with Aurora Kinase Inhibitors Enhances Lymphoma Cell Killing with Repression of c-Myc, hTERT, and microRNA Levels
Supplementary Figures 1-5, Tables 1-2, Table Legends 3-4 from Cisplatin Sensitivity Mediated by WEE1 and CHK1 Is Mediated by miR-155 and the miR-15 Family
Authors: Pouliot Lynn M. , Chen Yu-Chi , Bai Jennifer , Guha Rajarshi , Martin Scott E. , Gottesman Michael M. , Hall Matthew D.
Published: April 2023

PDF file - 4MB, Fig S1: Schematic demonstrating the objective of the high throughput screen Fig S2: Expression of miR family members in KB-3-1 and KB-CP.5 cells Fig S3: Expression of miR family members in KB-3-1 transfected with miR-15a mimic Fig S4: Expression of WEE1, CHEK1 and ATR in KB-CP.5 cells transfected with one of six siRNA against each gene Fig S5: Representative cell viability analysis dot blots of KB-3-1 and KB-CP.5 cells transfected with either siNeg, miR-16 mimic or miR-16 inhibitor alone or in the presence of cisplatin Fig S6: Representative cell cycle analysis histograms of KB-3-1 and KB-CP.5 cells transfected with either siNeg, miR-16 mimic or miR-16 inhibitor alone or in the presence of cisplatin Table S1: Protocol for the high-throughput screens Table S2: Cytotoxicity (IC50) values for KB-3-1 and KB-CP.5 lines with and without miRNA mimics or miRNA siRNA (inhibitors), and challenged with cisplatin
Supplementary Figure 3 from Hedgehog Signaling Blockade Delays Hepatocarcinogenesis Induced by Hepatitis B Virus X Protein
Authors: Arzumanyan Alla , Sambandam Vaishnavi , Clayton Marcia M. , Choi Steve S. , Xie Guanhua , Diehl Anna Mae , Yu Dae-Yeul , Feitelson Mark A.
Published: April 2023

PDF file - 3.6MB
Supplementary Methods, Figure Legends 1-8 from Sef Downregulation by Ras Causes MEK1/2 to Become Aberrantly Nuclear Localized Leading to Polyploidy and Neoplastic Transformation
Authors: Duhamel Stéphanie , Hébert Josée , Gaboury Louis , Bouchard Amélie , Simon Ronald , Sauter Guido , Basik Mark , Meloche Sylvain
Published: April 2023

PDF file - 136K
Supplementary Methods from Dissection of T-cell Antigen Specificity in Human Melanoma
Authors: Andersen Rikke Sick , Thrue Charlotte Albæk , Junker Niels , Lyngaa Rikke , Donia Marco , Ellebæk Eva , Svane Inge Marie , Schumacher Ton N. , thor Straten Per , Hadrup Sine Reker
Published: April 2023

PDF file - 94K
Supplementary Figure Legends 1-3 from 6-Bromoindirubin-3′-Oxime Inhibits JAK/STAT3 Signaling and Induces Apoptosis of Human Melanoma Cells
Authors: Liu Lucy , Nam Sangkil , Tian Yan , Yang Fan , Wu Jun , Wang Yan , Scuto Anna , Polychronopoulos Panos , Magiatis Prokopios , Skaltsounis Leandros , Jove Richard
Published: April 2023

Supplementary Figure Legends 1-3 from 6-Bromoindirubin-3′-Oxime Inhibits JAK/STAT3 Signaling and Induces Apoptosis of Human Melanoma Cells
Supplementary Figure 3 from Tumor-Derived Chemokine CCL5 Enhances TGF-β–Mediated Killing of CD8+ T Cells in Colon Cancer by T-Regulatory Cells
Authors: Chang Li-Yuan , Lin Yung-Chang , Mahalingam Jayashri , Huang Ching-Tai , Chen Ten-Wen , Kang Chiao-Wen , Peng Hui-Min , Chu Yu-Yi , Chiang Jy-Ming , Dutta Avijit , Day Yuan-Ji , Chen Tse-Ching , Yeh Chau-Ting , Lin Chun-Yen
Published: April 2023

PDF file - 119K
Supplementary Figure 4 from Densely Granulated Murine NK Cells Eradicate Large Solid Tumors
Authors: Liu Rebecca B. , Engels Boris , Arina Ainhoa , Schreiber Karin , Hyjek Elizabeth , Schietinger Andrea , Binder David C. , Butz Eric , Krausz Thomas , Rowley Donald A. , Jabri Bana , Schreiber Hans
Published: April 2023

PDF file - 52K
Supplementary Figure 1 from Tumor-Derived Chemokine CCL5 Enhances TGF-β–Mediated Killing of CD8+ T Cells in Colon Cancer by T-Regulatory Cells
Authors: Chang Li-Yuan , Lin Yung-Chang , Mahalingam Jayashri , Huang Ching-Tai , Chen Ten-Wen , Kang Chiao-Wen , Peng Hui-Min , Chu Yu-Yi , Chiang Jy-Ming , Dutta Avijit , Day Yuan-Ji , Chen Tse-Ching , Yeh Chau-Ting , Lin Chun-Yen
Published: April 2023

PDF file - 106K
Supplementary Table 1 from Paracrine Hedgehog Signaling Drives Metabolic Changes in Hepatocellular Carcinoma
Authors: Chan Isaac S. , Guy Cynthia D. , Chen Yuping , Lu Jiuyi , Swiderska-Syn Marzena , Michelotti Gregory A. , Karaca Gamze , Xie Guanhua , Krüger Leandi , Syn Wing-Kin , Anderson Blair R. , Pereira Thiago A. , Choi Steve S. , Baldwin Albert S. , Diehl Anna Mae
Published: April 2023

PDF file - 54K, Related primer sequences
Supplementary Methods, Tables 1-2, Figures 1-4 from Hedgehog Signaling Is a Novel Therapeutic Target in Tamoxifen-Resistant Breast Cancer Aberrantly Activated by PI3K/AKT Pathway
Authors: Ramaswamy Bhuvaneswari , Lu Yuanzhi , Teng Kun-yu , Nuovo Gerard , Li Xiaobai , Shapiro Charles L. , Majumder Sarmila
Published: April 2023

PDF file - 596K, Table S1: Predicted GSK3b phosphorylation sites on SMO. TableS2: Predicted GSK3b phosphorylation sites on SMO. FIG S1: Generation of cell lines resistant to increasing concentration of tamoxifen. FIG S2: Mammosphere formation assay with cells resistant to increasing concentration of tamoxifen. FIG S3: Effect of Gli1 depletion on OHTR and T47D cells. FIG S4: Regulation of GLI1 by PI3k/Akt pathway.
Supplementary Table 1 from Exploiting the Mutanome for Tumor Vaccination
Authors: Castle John C. , Kreiter Sebastian , Diekmann Jan , Löwer Martin , van de Roemer Niels , de Graaf Jos , Selmi Abderraouf , Diken Mustafa , Boegel Sebastian , Paret Claudia , Koslowski Michael , Kuhn Andreas N. , Britten Cedrik M. , Huber Christoph , Türeci Özlem , Sahin Ugur
Published: April 2023

XLS file - 15K
Supplementary Table 1 from The FGFR4-G388R Single-Nucleotide Polymorphism Alters Pancreatic Neuroendocrine Tumor Progression and Response to mTOR Inhibition Therapy
Authors: Serra Stefano , Zheng Lei , Hassan Manal , Phan Alexandria T. , Woodhouse Linda J. , Yao James C. , Ezzat Shereen , Asa Sylvia L.
Published: April 2023

PDF file,76K, Details of pNets studied