bluuebunny/crossref_metadata_2025 huggingface dataset:
How to Capture Thousands of Genotypes—Initiation of Somatic Embryogenesis in Norway Spruce
Authors: Varis Saila , Tikkinen Mikko , Edesi Jaanika , Aronen Tuija
Published: April 2023

Somatic embryogenesis (SE) is considered the most effective method for vegetative propagation of Norway spruce (Picea abies L. Karst). When the aim is commercial production, the process needs scaling up. This includes many initiations to increase the number of available genotypes in the cryo-bank. Numerous genotypes are needed to maintain genetic diversity in reforestation and, at the same time, are a prerequisite for the efficient improvement of breeding traits. Norway spruce is also highly susceptible to Heterobasidion root rot. We analysed the data from the SE initiations of Norway spruce from six different years, including a total of 126 families and almost 13,000 initiations, and used several genetic (including allele PaLAR3B improving Heterobasidion resistance), environmental, and operational variables to explain the initiation success and the number of cryopreserved embryogenic tissue (ET). Overall, the cone collection date was the best and most comprehensive single variable for predicting the initiation success and the number of cryopreserved ET in the logistic regression models. PaLAR3B allele did not interfere with SE initiation or the cryopreservation. In the optimal scenario, according to the current data, Norway spruce cones would be collected in southern Finland during the first two weeks of July (in approximately 800 d.d. accumulation) from the seed orchard or greenhouse and delivered quickly to the laboratory, and the cones would be cold-stored for five days or less before initiations on mLM media. Lower initiation frequencies in some families can be compensated by increasing the number of explants—however, taking operational limitations into account.
Bioinformatic Modeling (In Silico) of Obtaining Bioactive Peptides from the Protein Matrix of Various Types of Milk Whey
Authors: Kruchinin Aleksandr G. , Bolshakova Ekaterina I. , Barkovskaya Irina A.
Published: April 2023

Whey is a by-product of the production of various types of cottage cheese and cheese, casein, and coprecipitates. Conditions of milk coagulation directly affect the physico-chemical properties of whey and the formation of its protein profile. This fact makes it difficult to standardize the protein profile of milk whey for its further processing. Whey proteins have a great potential to release a wide range of bioactive peptides (BAP), capable of reducing the risk of a number of chronic food-related diseases. Computer modeling of an enzymatic hydrolysis of proteins is one of the ways to increase the efficiency of BAP release studies and to reduce the number of labor consuming experiments. This research is aimed at generating a digital model of the peptide complex of different whey types with predicted bioactivity, safety, and sensory properties using bioinformatic modeling approaches. The study was performed with the use of the proteomic databases tools according to the algorithm of hybrid strategy of bioinformatic modeling developed earlier. As a result of the study, taking into account the ranking of the proteins ratio in the protein profile, the hydrolysis by the protease complex chymotrypsin C-subtilisin was characterized as the maximum efficacy method to release peptides with both antioxidant and ACE-inhibitory activity. It was also observed that the bioactive peptides obtained as a result of in silico hydrolysis after GI digestion simulation can be considered safe in terms of allergic reactions and toxicological effects.
Applying Patient Segmentation Using Primary Care Electronic Medical Records to Develop a Virtual Peer-to-Peer Intervention for Patients with Type 2 Diabetes
Authors: Paglialonga Alessia , Theal Rebecca , Knox Bruce , Kyba Robert , Barber David , Guergachi Aziz , Keshavjee Karim
Published: April 2023

The aim of this study was to design a virtual peer-to-peer intervention for patients with type 2 diabetes (T2D) by grouping patients from specific segments using data from primary care electronic medical records (EMRs). Two opposing segments were identified: patients living with diabetes who tend to take several medications (“medication” segment: ~32%) and patients who do not take any diabetes-specific medications (“lifestyle” segment: ~15%). The remaining patients were from two intermediate segments and exhibited medication-taking behavior that placed them midway between the medication and lifestyle segments. Patients were grouped into six workshops (two workshops in each group: medication, lifestyle, and mixed group), including individuals with good and bad control of their disease. Measures of attitudes, learning, and motivation were addressed during and after the workshops. Results showed that patients in the lifestyle segment were more interested in T2D lifestyle control strategies, more satisfied with their in-workshop learning experience, and more motivated to set a goal than those in the medication segment. These results suggest that the proposed intervention may be more viable for patients in the lifestyle segment and that EMR data may be used to tailor behavioral interventions to specific patient groups. Future research is needed to investigate different segmentation approaches (e.g., using data related to smoking, drinking, diet, and physical activity) that could help tailor the intervention more effectively.
Short-Term Effects of Experimental Fire on Physicochemical and Microbial Properties of a Mediterranean Cambisol
Authors: Hrenović Jasna , Kisić Ivica , Delač Domina , Durn Goran , Bogunović Igor , Mikulec Mateja , Pereira Paulo
Published: April 2023

Little is known about the bonfire impact on microbial properties in soil. This work aimed to study moderate- to high-severity experimental burning (250 °C) compared to unburned Cambisol in a natural Mediterranean environment (Croatia) on selected soil properties. The soil was sampled immediately and 1, 2, 4, and 6 months after the fire. The fire increased the mean weight diameter, water stable aggregates, and water repellence in different soil fractions, and the observed effect was the strongest immediately after the fire. It also altered soil pH, electrical conductivity, total nitrogen carbon, and sulphur content, and completely destroyed carbapenem-resistant bacteria, but did not significantly affect the soil’s mineralogical properties. Six months after the fire, most microbial properties (save for pH) returned to near control values. Heterotrophic, sporogenic, and phosphate-solubilising bacteria started to recover after a month, whereas the population of carbapenem-resistant bacteria was destroyed initially, but recovered by the fourth month after the fire. Dehydrogenase activity was not significantly affected, but proper recovery started four months after the fire. Even though Cambisol showed some resilience to fire and its properties mostly returned to normal by the sixth month, and a full recovery is expected to occur later, as vegetation returns.
Spherical Box-Counting: Combining 360° Panoramas with Fractal Analysis
Authors: Kulcke Matthias , Lorenz Wolfgang
Published: April 2023

In this paper, a new box-counting method to achieve a highly specific topological fingerprinting of architecture in relation to the position of the observer and in the context of its surroundings is proposed. Central to this method is the use of 360-degree spherical panoramas as a basis for fractal measurement. Thus, a number of problems of the comparative analysis of the fractal dimension in the field of architecture are explicitly and implicitly addressed, first and foremost being the question of choosing image boundaries while considering adjacent vegetation, urban elements, and other visually present objects for Gestalt analysis of a specific building. Second, the problem of distance and perspective as part of the aesthetic experience based on viewer and object location were taken into account and are addressed. The implications of the use of a spherical perspective as described in this research are also highly relevant for other methods of aesthetic measures in architecture, including those implementing collaborative design processes guided by digital tools and machine learning, among others.
Enhancing the Mathematical Theory of Nabla Tempered Fractional Calculus: Several Useful Equations
Authors: Wei Yiheng , Zhao Linlin , Zhao Xuan , Cao Jinde
Published: April 2023

Although many applications of fractional calculus have been reported in literature, modeling the physical world using this technique is still a challenge. One of the main difficulties in solving this problem is that the long memory property is necessary, whereas the infinite memory is undesirable. To address this challenge, a new type of nabla fractional calculus with a weight function is formulated, which combines the benefits of nabla fractional calculus and its tempered counterpart, making it highly valuable for modeling practical systems. However, many properties of this calculus are still unclear and need to be discovered. Therefore, this paper gives particular emphasis to the topic, developing some remarkable properties, i.e., the equivalence relation, the nabla Taylor formula, and the nabla Laplace transform of such nabla tempered fractional calculus. All the developed properties greatly enrich the mathematical theory of nabla tempered fractional calculus and provide high value and potential for further applications.
Homo- and Copolymer Hydrogels Based on N-Vinylformamide: An Investigation of the Impact of Water Structure on Controlled Release
Authors: Yooyod Maytinee , Ross Sukunya , Phewchan Premchirakorn , Daengmankhong Jinjutha , Pinthong Thanyaporn , Tuancharoensri Nantaprapa , Mahasaranon Sararat , Viyoch Jarupa , Ross Gareth M.
Published: April 2023

This study investigated the performance of novel hydrogels based on poly (N-vinylformamide) (PNVF), copolymers of NVF with N-hydroxyethyl acrylamide (HEA) (P(NVF-co-HEA)), and 2-carboxyethyl acrylate (CEA) (P(NVF-co-CEA)), which were synthesized by photopolymerization using a UVLED light source. The hydrogels were analyzed for important properties such as equilibrium water content (%EWC), contact angle, freezing and non-freezing water, and diffusion-based in vitro release. The results showed that PNVF had an extremely high %EWC of 94.57%, while a decreasing NVF content in the copolymer hydrogels led to a decrease in water content with a linear relationship with HEA or CEA content. Water structuring in the hydrogels showed appreciably more variance, with ratios of free to bound water differing from 16.7:1 (NVF) to 1.3:1 (CEA), corresponding to PNVF having ~67 water molecules per repeat unit. The release studies of different dye molecules followed Higuchi’s model, with the amount of dye released from the hydrogels depending on the amount of free water and the structural interactions between the polymer and the molecule being released. The results suggest that PNVF copolymer hydrogels have potential for controlled drug delivery by altering the polymer composition to govern the amount and ratio of free to bound water contained in the hydrogels.
The Effect of Fetal Bovine Acellular Dermal Matrix Seeded with Wharton’s Jelly Mesenchymal Stem Cells for Healing Full-Thickness Skin Wounds
Authors: Mansour Reyhaneh , Hasanzadeh Elham , Abasi Mozhgan , Gholipourmalekabadi Mazaher , Mellati Amir , Enderami Seyed
Published: April 2023

The treatment of full-thickness skin wounds is a problem in the clinical setting, as they do not heal spontaneously. Extensive pain at the donor site and a lack of skin grafts limit autogenic and allogeneic skin graft availability. We evaluated fetal bovine acellular dermal matrix (FADM) in combination with human Wharton’s jelly mesenchymal stem cells (hWJ-MSCs) to heal full-thickness skin wounds. FADM was prepared from a 6-month-old trauma-aborted fetus. WJ-MSCs were derived from a human umbilical cord and seeded on the FADM. Rat models of full-thickness wounds were created and divided into three groups: control (no treatment), FADM, and FADM-WJMSCs groups. Wound treatment was evaluated microscopically and histologically on days 7, 14, and 21 post-surgery. The prepared FADM was porous and decellularized with a normal range of residual DNA. WJ-MSCs were seeded and proliferated on FADM effectively. The highest wound closure rate was observed in the FADM-WJMSC group on days 7 and 14 post-surgery. Furthermore, this group had fewer inflammatory cells than other groups. Finally, in this study, we observed that, without using the differential cell culture media of fibroblasts, the xenogeneic hWJSCs in combination with FADM could promote an increased rate of full-thickness skin wound closure with less inflammation.
Prenatal Detection of Trisomy 2: Considerations for Genetic Counseling and Testing
Authors: Talantova Olga E. , Koltsova Alla S. , Tikhonov Andrei V. , Pendina Anna A. , Malysheva Olga V. , Tarasenko Olga A. , Vashukova Elena S. , Shabanova Elena S. , Golubeva Arina V. , Chiryaeva Olga G. , Glotov Andrey S. , Bespalova Olesya N. , Efimova Olga A.
Published: April 2023

We report on the case of prenatal detection of trisomy 2 in placental biopsy and further algorithm of genetic counseling and testing. A 29-year-old woman with first-trimester biochemical markers refused chorionic villus sampling and preferred targeted non-invasive prenatal testing (NIPT), which showed low risk for aneuploidies 13, 18, 21, and X. A series of ultrasound examinations revealed increased chorion thickness at 13/14 weeks of gestation and fetal growth retardation, a hyperechoic bowel, challenging visualization of the kidneys, dolichocephaly, ventriculomegaly, increase in placental thickness, and pronounced oligohydramnios at 16/17 weeks of gestation. The patient was referred to our center for an invasive prenatal diagnosis. The patient’s blood and placenta were sampled for whole-genome sequencing-based NIPT and array comparative genomic hybridization (aCGH), respectively. Both investigations revealed trisomy 2. Further prenatal genetic testing in order to confirm trisomy 2 in amniocytes and/or fetal blood was highly questionable because oligohydramnios and fetal growth retardation made amniocentesis and cordocentesis technically unfeasible. The patient opted to terminate the pregnancy. Pathological examination of the fetus revealed internal hydrocephalus, atrophy of brain structure, and craniofacial dysmorphism. Conventional cytogenetic analysis and fluorescence in situ hybridization revealed chromosome 2 mosaicism with a prevalence of trisomic clone in the placenta (83.2% vs. 16.8%) and a low frequency of trisomy 2, which did not exceed 0.6% in fetal tissues, advocating for low-level true fetal mosaicism. To conclude, in pregnancies at risk of fetal chromosomal abnormalities that refuse invasive prenatal diagnosis, whole-genome sequencing-based NIPT, but not targeted NIPT, should be considered. In prenatal cases of trisomy 2, true mosaicism should be distinguished from placental-confined mosaicism using cytogenetic analysis of amniotic fluid cells or fetal blood cells. However, if material sampling is impossible due to oligohydramnios and/or fetal growth retardation, further decisions should be based on a series of high-resolution fetal ultrasound examinations. Genetic counseling for the risk of uniparental disomy in a fetus is also required.
Agronomic Performance and Nutraceutical Quality of a Tomato Germplasm Line Selected under Organic Production System
Authors: Romdhane Amani , Riahi Anissa , Piro Gabriella , Lenucci Marcello Salvatore , Hdider Chafik
Published: April 2023

Organic tomato production is increasing worldwide, thus making necessary the development of varieties adapted to this farming system. It is now well known that the implementation of local tomato plant breeding programs for organic farming is required to increase the performance of varieties in this typology of cultivation regime. In this research, the agronomic performance, nutraceutical contents, and radical scavenging activity of a tomato germplasm line (OSTGL), selected under organically grown conditions, were evaluated for two consecutive years (2018 and 2019) in comparison with the variety ‘Rio Grande’, frequently grown organically in Tunisia. Carotenoids, phenolics, vitamin C, and radical scavenging capacity were assayed spectrophotometrically, while tocopherols were analyzed by HPLC. All data were not affected by year-to-year variability. The OSTGL line showed significantly higher marketable yield, total phenol, flavonoid, vitamin C, α-tocopherol and γ-tocopherol contents, along with radical scavenging activity. The OSTGL red-ripe berries also showed comparable values for average weight, soluble solids, pH, titratable acidity, firmness and coloration, as well as lycopene and β-carotene contents. This open pollinated tomato germplasm line demonstrated to be an effective sustainable variety for improving fruit yield, agronomic, and nutraceutical characteristics under an organic management system.
Reliability and Validity of Six Selected Observational Methods for Risk Assessment of Hand Intensive and Repetitive Work
Authors: Nyman Teresia , Rhén Ida-Märta , Johansson Peter J. , Eliasson Kristina , Kjellberg Katarina , Lindberg Per , Fan Xuelong , Forsman Mikael
Published: April 2023

Risk assessments of hand-intensive and repetitive work are commonly done using observational methods, and it is important that the methods are reliable and valid. However, comparisons of the reliability and validity of methods are hampered by differences in studies, e.g., regarding the background and competence of the observers, the complexity of the observed work tasks and the statistical methodology. The purpose of the present study was to evaluate six risk assessment methods, concerning inter- and intra-observer reliability and concurrent validity, using the same methodological design and statistical parameters in the analyses. Twelve experienced ergonomists were recruited to perform risk assessments of ten video-recorded work tasks twice, and consensus assessments for the concurrent validity were carried out by three experts. All methods’ total-risk linearly weighted kappa values for inter-observer reliability (when all tasks were set to the same duration) were lower than 0.5 (0.15–0.45). Moreover, the concurrent validity values were in the same range with regards to total-risk linearly weighted kappa (0.31–0.54). Although these levels are often considered as being fair to substantial, they denote agreements lower than 50% when the expected agreement by chance has been compensated for. Hence, the risk of misclassification is substantial. The intra-observer reliability was only somewhat higher (0.16–0.58). Regarding the methods ART (Assessment of repetitive tasks of the upper limbs) and HARM (Hand Arm Risk Assessment Method), it is worth noting that the work task duration has a high impact in the risk level calculation, which needs to be taken into account in studies of reliability. This study indicates that when experienced ergonomists use systematic methods, the reliability is low. As seen in other studies, especially assessments of hand/wrist postures were difficult to rate. In light of these results, complementing observational risk assessments with technical methods should be considered, especially when evaluating the effects of ergonomic interventions.
“You Don’t Get That from Professionals”: A Consumer-Led Peer Recovery Program for Families and Friends of Individuals with Alcohol and Other Drugs Use Issues in Darwin
Authors: Tari-Keresztes Noemi , Armstrong Noelene , Smith James A. , Gupta Himanshu , Goding Sam , Endemann Sal-Amanda
Published: April 2023

While there has been a reduction in alcohol consumption among Australians aged 18 years and above, about 25% of people still drink above the recommended limit. The use of alcohol and other drugs is a substantial issue in the Northern Territory; however, there have been significant investments in alcohol reforms over the past few years. This paper reports on a pilot study that involved co-designing, implementing, and evaluating the Circles of Support consumer-led recovery and empowerment program for families and friends of individuals with alcohol and other drugs use issues. The evaluation comprised a mixed-methods approach; however, this article only presents the qualitative component (n = 7). Interview data were thematically analysed, and four main themes were identified: (1) the value of a peer-to-peer approach; (2) facing challenges and distress; (3) adopting self-care strategies; and (4) the development of valuable skills. Participants enjoyed the program content and learning. This involved self-care and communication strategies, boundary setting, service navigation, the concept of post-traumatic growth, the circles of control, and the stages of change model for families. Our findings strongly support the scaling up of the program in Darwin and other locations across the Northern Territory and future program adaptation for different vulnerable target audiences.
“Know Your Children, Who They Are, Their Weakness, and Their Strongest Point”: A Qualitative Study on Diné Parent Experiences Accessing Autism Services for Their Children
Authors: Lindly Olivia J. , Henderson Davis E. , Vining Christine B. , Running Bear Candi L. , Nozadi Sara S. , Bia Shannon
Published: April 2023

Background and Objective: Marked inequities in access to autism services and related health outcomes persist for U.S. children, undermining broader initiatives to advance the population’s health. At the intersection of culture, poverty, and ruralness little remains known about autism in many Indigenous communities. This qualitative study on the lived experiences of Navajo (Diné) parents raising a child with autism sought to identify factors affecting access to services. Methods: A Diné researcher conducted in-depth interviews with 15 Diné parents of children with autism living in or around the Navajo Nation. A directed content analysis approach was used to identify themes, subthemes, and connections between themes. Results: Twelve overarching themes emerged on Diné parents’ experiences accessing autism diagnostic and treatment services, as well as ways access to autism services can be improved. The following themes were related to diagnosis: the diagnostic process was often emotionally fraught; long wait times of up to years for diagnostic services were commonplace; limited clinician training and cultural humility impeded access to diagnostic services; and adequate health insurance, Indian Health Service referrals, care coordination, financial aid for travel, and efficient evaluation facilitated diagnosis. Themes on treatment access were as follows: parent perceptions of the extent to which an autism service helped their child affected access; social support helped parents to access treatment; obtaining referrals and care coordination influenced treatment access; treatment costs affected access; and service availability and geographic proximity impacted treatment access. Themes on ways to improve access to autism services were as follows: greater autism awareness is needed; autism-focused support groups may be helpful; and increased availability and quality of autism services across and around the Navajo Nation is paramount. Conclusions: Diné parents’ access to autism services was dynamically affected by sociocultural factors that must be addressed in future health equity-oriented initiatives.
Retrospective and Comparative Study of Three Molecular Assays for the Macrolide Resistance Detection in Mycoplasma genitalium Positive Urogenital Specimens
Authors: Peris María Paz , Dehesa Blanca , Alonso Henar , Escolar Cristina , Clusa Laura , Latorre-Millán Miriam , Rezusta Antonio , Milagro Ana
Published: April 2023

The capacity of Mycoplasma genitalium to develop resistance to macrolides makes detection of macrolide resistance genes by rapid real-time PCR assays increasingly necessary in clinical diagnostic laboratories so as to initiate appropriate treatment as rapidly as possible. The aim of this retrospective and comparative study was to conduct the clinical evaluation of three commercially available kits for macrolide resistance detection. A total of 111 M. genitalium positive samples analyzed in the Clinical Microbiology Laboratory of the Miguel Servet University Hospital, Zaragoza (Spain) were used. After M. genitalium molecular confirmation, the three assays under study were evaluated and discrepant results were resolved via sequencing. The clinical sensitivity for resistance detection was 83% (95% confidence interval, 69% to 93%) for the ResistancePlus® MG panel kit (SpeeDx Pty Ltd., Sydney, Australia), 95% (84% to 99%) for AllplexTM MG & AziR Assay (Seegene®, Seoul, Korea), and 97% (88% to 99%) for the VIASURE macrolide resistance-associated mutations (23SrRNA) Real time PCR detection kit (Certest Biotec, Zaragoza, Spain). The clinical specificity was 100% (94% to 100%) for Allplex and VIASURE assays and 95% (86% to 99%) for SpeeDx assay. The results arising from this study are cause for strong consideration for the implementation of rapid real-time PCR assays in clinical diagnosis laboratories to eliminate treatment failure and transmission as soon as possible.
Verproside, the Most Active Ingredient in YPL-001 Isolated from Pseudolysimachion rotundum var. subintegrum, Decreases Inflammatory Response by Inhibiting PKCδ Activation in Human Lung Epithelial Cells
Authors: Oh Eun Sol , Ryu Hyung Won , Kim Mun-Ock , Lee Jae-Won , Song Yu Na , Park Ji-Yoon , Kim Doo-Young , Ro Hyunju , Lee Jinhyuk , Kim Tae-Don , Hong Sung-Tae , Lee Su Ui , Oh Sei-Ryang
Published: April 2023

Chronic obstructive pulmonary disease (COPD) is a chronic inflammatory lung disease which causes breathing problems. YPL-001, consisting of six iridoids, has potent inhibitory efficacy against COPD. Although YPL-001 has completed clinical trial phase 2a as a natural drug for COPD treatment, the most effective iridoid in YPL-001 and its mechanism for reducing airway inflammation remain unclear. To find an iridoid most effectively reducing airway inflammation, we examined the inhibitory effects of the six iridoids in YPL-001 on TNF or PMA-stimulated inflammation (IL-6, IL-8, or MUC5AC) in NCI-H292 cells. Here, we show that verproside among the six iridoids most strongly suppresses inflammation. Both TNF/NF-κB-induced MUC5AC expression and PMA/PKCδ/EGR-1-induced IL-6/-8 expression are successfully reduced by verproside. Verproside also shows anti-inflammatory effects on a broad range of airway stimulants in NCI-H292 cells. The inhibitory effect of verproside on the phosphorylation of PKC enzymes is specific to PKCδ. Finally, in vivo assay using the COPD-mouse model shows that verproside effectively reduces lung inflammation by suppressing PKCδ activation and mucus overproduction. Altogether, we propose YPL-001 and verproside as candidate drugs for treating inflammatory lung diseases that act by inhibiting PKCδ activation and its downstream pathways.
Harnessing Epigenetics for Breast Cancer Therapy: The Role of DNA Methylation, Histone Modifications, and MicroRNA
Authors: Szczepanek Joanna , Skorupa Monika , Jarkiewicz-Tretyn Joanna , Cybulski Cezary , Tretyn Andrzej
Published: April 2023

Breast cancer exhibits various epigenetic abnormalities that regulate gene expression and contribute to tumor characteristics. Epigenetic alterations play a significant role in cancer development and progression, and epigenetic-targeting drugs such as DNA methyltransferase inhibitors, histone-modifying enzymes, and mRNA regulators (such as miRNA mimics and antagomiRs) can reverse these alterations. Therefore, these epigenetic-targeting drugs are promising candidates for cancer treatment. However, there is currently no effective epi-drug monotherapy for breast cancer. Combining epigenetic drugs with conventional therapies has yielded positive outcomes and may be a promising strategy for breast cancer therapy. DNA methyltransferase inhibitors, such as azacitidine, and histone deacetylase inhibitors, such as vorinostat, have been used in combination with chemotherapy to treat breast cancer. miRNA regulators, such as miRNA mimics and antagomiRs, can alter the expression of specific genes involved in cancer development. miRNA mimics, such as miR-34, have been used to inhibit tumor growth, while antagomiRs, such as anti-miR-10b, have been used to inhibit metastasis. The development of epi-drugs that target specific epigenetic changes may lead to more effective monotherapy options in the future.
Fingerprinting Evaluation and Gut Microbiota Regulation of Polysaccharides from Jujube (Ziziphus jujuba Mill.) Fruit
Authors: Li Zhenwei , Wu Menglei , Wei Wenlong , An Yaling , Li Yun , Wen Qiuyi , Zhang Daidi , Zhang Jianqing , Yao Changliang , Bi Qirui , Guo De’an
Published: April 2023

Jujube fruit was well-loved and praised by the broad masses due to its delicious taste, abundant nutritional value, and medicinal properties. Few studies reported the quality evaluation and gut microbiota regulation effect of polysaccharides of jujube fruits from different producing areas. In the present study, multi-level fingerprint profiling, including polysaccharides, oligosaccharides, and monosaccharides, was established for the quality evaluation of polysaccharides from jujube fruits. For polysaccharides, the total content in jujube fruits ranged from 1.31% to 2.22%, and the molecular weight distribution (MWD) ranged from 1.14 × 105 to 1.73 × 106 Da. The MWD fingerprint profiling of polysaccharides from eight producing areas was similar, but the profile of infrared spectroscopy (IR) showed differentiation. The characteristic signals were screened and used to establish a discrimination model for the identification of jujube fruits from different areas, and the accuracy of identification reached 100.00%. For oligosaccharides, the main components were galacturonic acid polymers (DP, 2–4), and the profile of oligosaccharides exhibited high similarity. The monosaccharides, GalA, Glc, and Ara, were the primary monosaccharides. Although the fingerprint of monosaccharides was semblable, the composing proportion of monosaccharides revealed significant differences. In addition, the polysaccharides of jujube fruits could regulate the gut microbiota composition and possess potential therapeutic effects on dysentery and nervous system diseases.
NAFLD/MAFLD: New Evidence
Authors: Mantovani Alessandro , Dalbeni Andrea
Published: April 2023

The aim of the second edition of our Special Issue, entitled “Nonalcoholic Fatty Liver Disease/Metabolic Associated Fatty Liver Disease: New Insights 2 [...]
Systematical Characterization of the AT-Hook Gene Family in Juglans regia L. and the Functional Analysis of the JrAHL2 in Flower Induction and Hypocotyl Elongation
Authors: Jia Peng , Liu Jiale , Yan Rui , Yang Kaiyu , Dong Qinglong , Luan Haoan , Zhang Xuemei , Li Han , Guo Suping , Qi Guohui
Published: April 2023

AT-hook motif nuclear localization (AHL) proteins play essential roles in various plant biological processes. Yet, a comprehensive understanding of AHL transcription factors in walnut (Juglans regia L.) is missing. In this study, 37 AHL gene family members were first identified in the walnut genome. Based on the evolutionary analysis, JrAHL genes were grouped into two clades, and their expansion may occur due to segmental duplication. The stress-responsive nature and driving of developmental activities of JrAHL genes were revealed by cis-acting elements and transcriptomic data, respectively. Tissue-specific expression analysis showed that JrAHLs had a profound transcription in flower and shoot tip, JrAHL2 in particular. Subcellular localization showed that JrAHL2 is anchored to the nucleus. Overexpression of JrAHL2 in Arabidopsis adversely affected hypocotyl elongation and delayed flowering. Our study, for the first time, presented a detailed analysis of JrAHL genes in walnut and provided theoretical knowledge for future genetic breeding programs.
Eosinophilic Airway Diseases: From Pathophysiological Mechanisms to Clinical Practice
Authors: Mormile Mauro , Mormile Ilaria , Fuschillo Salvatore , Rossi Francesca Wanda , Lamagna Laura , Ambrosino Pasquale , de Paulis Amato , Maniscalco Mauro
Published: April 2023

Eosinophils play a key role in airway inflammation in many diseases, such as allergic and non-allergic asthma, chronic rhinosinusitis with nasal polyps, and chronic obstructive pulmonary disease. In these chronic disabling conditions, eosinophils contribute to tissue damage, repair, remodeling, and disease persistence through the production a variety of mediators. With the introduction of biological drugs for the treatment of these respiratory diseases, the classification of patients based on clinical characteristics (phenotype) and pathobiological mechanisms (endotype) has become mandatory. This need is particularly evident in severe asthma, where, despite the great scientific efforts to understand the immunological pathways underlying clinical phenotypes, the identification of specific biomarkers defining endotypes or predicting pharmacological response remains unsatisfied. In addition, a significant heterogeneity also exists among patients with other airway diseases. In this review, we describe some of the immunological differences in eosinophilic airway inflammation associated with severe asthma and other airway diseases and how these factors might influence the clinical presentation, with the aim of clarifying when eosinophils play a key pathogenic role and, therefore, represent the preferred therapeutic target.
Natural Isoforms of Listeria monocytogenes Virulence Factor Inlb Differ in c-Met Binding Efficiency and Differently Affect Uptake and Survival Listeria in Macrophage
Authors: Chalenko Yaroslava M. , Slonova Daria A. , Kechko Olga I. , Kalinin Egor V. , Mitkevich Vladimir A. , Ermolaeva Svetlana A.
Published: April 2023

Listeria monocytogenes virulence factor InlB specifically interacts with the receptors c-Met and gC1q-R. Both receptors are present in non-professional and professional phagocytes, including macrophages. Phylogenetically defined InlB isoforms differently support invasion into non-professional phagocytes. This work deals with the effects of InlB isoforms on L. monocytogenes uptake and intracellular proliferation in human macrophages. Three isoforms of the receptor binding domain (idInlB) were derived from phylogenetically distinct L. monocytogenes strains belonging to the highly virulent CC1 (idInlBCC1), medium-virulence CC7 (idInlBCC7), and low-virulence CC9 (idInlBCC9) clonal complexes. The constant dissociation increased in the order idInlBCC1 << idInlBCC7 < idInlBCC9 for interactions with c-Met, and idInlBCC1 ≈ idInlBCC7 < idInlBCC9 for interactions with gC1q-R. The comparison of uptake and intracellular proliferation of isogenic recombinant strains which expressed full-length InlBs revealed that the strain expressing idInlBCC1 proliferated in macrophages twice as efficiently as other strains. Macrophage pretreatment with idInlBCC1 followed by recombinant L. monocytogenes infection disturbed macrophage functions decreasing pathogen uptake and improving its intracellular multiplication. Similar pretreatment with idInlBCC7 decreased bacterial uptake but also impaired intracellular multiplication. The obtained results demonstrated that InlB impaired macrophage functions in an idInlB isoform-dependent manner. These data suggest a novel InlB function in L. monocytogenes virulence.
Derrone Targeting the TGF Type 1 Receptor Kinase Improves Bleomycin-Mediated Pulmonary Fibrosis through Inhibition of Smad Signaling Pathway
Authors: Molagoda Ilandarage Menu Neelaka , Sanjaya Sobarathne Senel , Lee Kyoung Tae , Choi Yung Hyun , Lee Joyce H. , Lee Mi-Hwa , Kang Chang-Hee , Lee Chang-Min , Kim Gi-Young
Published: April 2023

Transforming growth factor-β (TGF-β) has a strong impact on the pathogenesis of pulmonary fibrosis. Therefore, in this study, we investigated whether derrone promotes anti-fibrotic effects on TGF-β1-stimulated MRC-5 lung fibroblast cells and bleomycin-induced lung fibrosis. Long-term treatment with high concentrations of derrone increased the cytotoxicity of MRC-5 cells; however, substantial cell death was not observed at low concentrations of derrone (below 0.05 μg/mL) during a three-day treatment. In addition, derrone significantly decreased the expressions of TGF-β1, fibronectin, elastin, and collagen1α1, and these decreases were accompanied by downregulation of α-SMA expression in TGF-β1-stimulated MRC-5 cells. Severe fibrotic histopathological changes in infiltration, alveolar congestion, and alveolar wall thickness were observed in bleomycin-treated mice; however, derrone supplementation significantly reduced these histological deformations. In addition, intratracheal administration of bleomycin resulted in lung collagen accumulation and high expression of α-SMA and fibrotic genes—including TGF-β1, fibronectin, elastin, and collagen1α1—in the lungs. However, fibrotic severity in intranasal derrone-administrated mice was significantly less than that of bleomycin-administered mice. Molecular docking predicted that derrone potently fits into the ATP-binding pocket of the TGF-β receptor type 1 kinase domain with stronger binding scores than ATP. Additionally, derrone inhibited TGF-β1-induced phosphorylation and nuclear translocations of Smad2/3. Overall, derrone significantly attenuated TGF-β1-stimulated lung inflammation in vitro and bleomycin-induced lung fibrosis in a murine model, indicating that derrone may be a promising candidate for preventing pulmonary fibrosis.
Azido-Ceramides, a Tool to Analyse SARS-CoV-2 Replication and Inhibition—SARS-CoV-2 Is Inhibited by Ceramides
Authors: Brenner Daniela , Geiger Nina , Schlegel Jan , Diesendorf Viktoria , Kersting Louise , Fink Julian , Stelz Linda , Schneider-Schaulies Sibylle , Sauer Markus , Bodem Jochen , Seibel Jürgen
Published: April 2023

Recently, we have shown that C6-ceramides efficiently suppress viral replication by trapping the virus in lysosomes. Here, we use antiviral assays to evaluate a synthetic ceramide derivative α-NH2-ω-N3-C6-ceramide (AKS461) and to confirm the biological activity of C6-ceramides inhibiting SARS-CoV-2. Click-labeling with a fluorophore demonstrated that AKS461 accumulates in lysosomes. Previously, it has been shown that suppression of SARS-CoV-2 replication can be cell-type specific. Thus, AKS461 inhibited SARS-CoV-2 replication in Huh-7, Vero, and Calu-3 cells up to 2.5 orders of magnitude. The results were confirmed by CoronaFISH, indicating that AKS461 acts comparable to the unmodified C6-ceramide. Thus, AKS461 serves as a tool to study ceramide-associated cellular and viral pathways, such as SARS-CoV-2 infections, and it helped to identify lysosomes as the central organelle of C6-ceramides to inhibit viral replication.
Exercise-Induced Fibroblast Growth Factor-21: A Systematic Review and Meta-Analysis
Authors: Kim Hyunjoong , Jung Jihye , Park Sungeon , Joo Younglan , Lee Sangbong , Sim Jeongu , Choi Jinhyeong , Lee Hyun , Hwang Gyujeong , Lee Seungwon
Published: April 2023

This systematic review aimed to synthesize and quantify the results of the studies investigating the changes in fibroblast growth factor-21 (FGF-21) induced by exercise. We searched for studies that did not differentiate between patients and healthy adults but compared them before and after exercise and with and without exercise. For quality assessment, the risk-of-bias assessment tool for nonrandomized studies and the Cochrane risk-of-bias tool were used. A quantitative analysis was performed using the standardized mean difference (SMD) and random-effects model in RevMan 5.4. A total of 94 studies were searched in international electronic databases, and after screening, 10 studies with 376 participants were analyzed. Compared with no exercise, there was a significant increase in the FGF-21 levels from before to after exercise (SMD = 1.05, 95% confidence interval (CI), 0.21 to 1.89). The changes in FGF-21 levels in the exercise group showed a significant difference from the levels in the controls. The results of the random-effects model were as follows: SMD = 1.12; 95% CI, −0.13 to 2.37. While the data on acute exercise were not synthesized in this study, FGF-21 levels generally increased after chronic exercise compared with no exercise.
Integration of mRNA and miRNA Analysis Reveals the Post-Transcriptional Regulation of Salt Stress Response in Hemerocallis fulva
Authors: Zhou Bo , Gao Xiang , Zhao Fei
Published: April 2023

MicroRNAs (miRNAs) belong to non-coding small RNAs which have been shown to take a regulatory function at the posttranscriptional level in plant growth development and response to abiotic stress. Hemerocallis fulva is an herbaceous perennial plant with fleshy roots, wide distribution, and strong adaptability. However, salt stress is one of the most serious abiotic stresses to limit the growth and production of Hemerocallis fulva. To identify the miRNAs and their targets involved in the salt stress resistance, the salt-tolerant H. fulva with and without NaCl treatment were used as materials, and the expression differences of miRNAs–mRNAs related to salt-tolerance were explored and the cleavage sites between miRNAs and targets were also identified by using degradome sequencing technology. In this study, twenty and three significantly differential expression miRNAs (p-value < 0.05) were identified in the roots and leaves of H. fulva separately. Additionally, 12,691 and 1538 differentially expressed genes (DEGs) were also obtained, respectively, in roots and leaves. Moreover, 222 target genes of 61 family miRNAs were validated by degradome sequencing. Among the DE miRNAs, 29 pairs of miRNA targets displayed negatively correlated expression profiles. The qRT-PCR results also showed that the trends of miRNA and DEG expression were consistent with those of RNA-seq. A gene ontology (GO) enrichment analysis of these targets revealed that the calcium ion pathway, oxidative defense response, microtubule cytoskeleton organization, and DNA binding transcription factor responded to NaCl stress. Five miRNAs, miR156, miR160, miR393, miR166, and miR396, and several hub genes, squamosa promoter-binding-like protein (SPL), auxin response factor 12 (ARF), transport inhibitor response 1-like protein (TIR1), calmodulin-like proteins (CML), and growth-regulating factor 4 (GRF4), might play central roles in the regulation of NaCl-responsive genes. These results indicate that non-coding small RNAs and their target genes that are related to phytohormone signaling, Ca2+ signaling, and oxidative defense signaling pathways are involved in H. fulva’s response to NaCl stress.
Catalysis of a Bis-Caffeine Palladium(II) NHC-Pincer Complex
Authors: Bysewski Oliver , Winter Andreas , Schubert Ulrich S.
Published: April 2023

A tridentate bis-NHC Pd complex, based on caffeine, was studied for its catalytic activity. This complex displayed a high catalytic activity in the Suzuki–Miyaura and Mizoroki–Heck cross-coupling reactions of aryl halides. The Sonogashira cross-coupling was also investigated but reveals a fast plateauing of the reaction. Aryl iodides as well as aryl bromides react when equipped with either electron-donating or electron-withdrawing substituents. Aryl chlorides, which contained electron-withdrawing groups, were also reactive under the applied conditions.
Automatic Detection of Moths (Lepidoptera) with a Funnel Trap Prototype
Authors: Flórián Norbert , Jósvai Júlia Katalin , Tóth Zsolt , Gergócs Veronika , Sipőcz László , Tóth Miklós , Dombos Miklós
Published: April 2023

Monitoring insect populations is essential to optimise pest control with the correct protection timing and the avoidance of unnecessary insecticide use. Modern real-time monitoring practices use automatic insect traps, which are expected to be able to estimate the population sizes of pest animals with high species specificity. There are many solutions to overcome this challenge; however, there are only a few data that consider their accuracy under field conditions. This study presents an opto-electronic device prototype (ZooLog VARL) developed by us. A pilot field study evaluated the precision and accuracy of the data filtering using an artificial neural network(ANN) and the detection accuracy of the new probes. The prototype comprises a funnel trap, sensor-ring, and data communication system. The main modification of the trap was a blow-off device that prevented the escape of flying insects from the funnel. These new prototypes were tested in the field during the summer and autumn of 2018, detecting the daily and monthly flight of six moth species (Agrotis segetum, Autographa gamma, Helicoverpa armigera, Cameraria ohridella, Grapholita funebrana, Grapholita molesta). The accuracy of ANN was always higher than 60%. In the case of species with larger body sizes, it reached 90%. The detection accuracy ranged from 84% to 92% on average. These probes detected the real-time catches of the moth species. Therefore, weekly and daily patterns of moth flight activity periods could be compared and displayed for the different species. This device solved the problem of multiple counting and gained a high detection accuracy in target species cases. ZooLog VARL probes provide the real-time, time-series data sets of each monitored pest species. Further evaluation of the catching efficiency of the probes is needed. However, the prototype allows us to follow and model pest dynamics and may make more precise forecasts of population outbreaks.
Optimizing Tracheal Oxygen Tension and Diffusion Ratio When Choosing High-Flow Oxygen Therapy or CPAP for the Treatment of Hypoxemic Respiratory Failure: Insights from Ex Vivo Physiologic Modelling
Authors: Truschel Bill , Polkey Michael I.
Published: April 2023

This article is a review of the physiological and technological processes underpinning high-flow nasal therapy with oxygen (HFNT or HFOT) for the treatment of hypoxemic respiratory failure. A mathematical model was carefully built to represent the relationships between the settings on the HFNT device and the resultant diffusion of oxygen into hypoxemic, arterial blood. The analysis was used to recommend a strategy for setting the flow rate at or above the patient’s peak inspiratory flow when HFNT is used with a blender and equal to the patient’s peak inspiratory rate when bleed-in oxygen is used. The analysis also teaches how to titrate the settings to achieve a desired fraction of inhaled oxygen, (FiO2), in the trachea using a simple ratio when bleed-in oxygen is used. The model was used to compare HFNT as a method to improve oxygen diffusion efficacy with other forms of oxygen therapy. The analysis in this article relates the efficacy of HFOT/HFNT to that of CPAP with supplemental oxygen by computing the diffusion ratio of oxygen therapy versus breathing room air. We predicted that in non-atelectatic lungs, when considering oxygenation, HFNT can be equally effective as CPAP with supplemental oxygen therapy for treating hypoxemic respiratory failure.