bluuebunny/crossref_metadata_2025 huggingface dataset:
Congratulations! You are severely underweight—Exploring negative consequences of persuasive system design
Authors: Harr Rikard , Öhlund Linnea
Published: September 2023

Personal health and wellbeing have grown as an object of study within HCI research and many individuals undergoing weight loss journeys use persuasive systems, such as weight loss apps, to guide them. These systems rely on various principles to persuade users toward their health goal and have in much research been considered having positive effects. There are however also parallel findings indicating unwanted effects. To explore the effects of persuasive system design, we conduct a longitudinal exploratory expert evaluation of 10 free weight loss tracking apps by emulating drastic weight loss for an extended period of time. The objective of the exploration is to unravel potential negative effects of using such systems. Our findings highlight risks of negative effects as some apps take a passive stance toward drastic weight loss, while others actively encourage it through design. We contribute to a growing strand of health related HCI research by mapping out the relation between design and negative consequences of persuasive system use.
The importance of identifying and protecting coastal wildness
Authors: Gleason Mary G. , Reynolds Mark D. , Heady Walter N. , Easterday Kelly , Morrison Scott A.
Published: September 2023

Conservation of coastal biodiversity and associated ecosystem services requires protection and management for attributes of coastal wildness, which we define to include physical and ecological intactness and connectivity, native species and habitat diversity, and limited human disturbance. Coastal wildness is threatened by high demand for access to and development of coastal margins; sea level rise exacerbates this threat. As a case study, California (USA), a biodiversity hotspot, has a network of marine and terrestrial protected areas along the coast and strong coastal policy. While 35% of California’s coast has wildness attributes, only 9% of California’s coast is characterized as wild and also protected on both land and in the adjacent waters. A multi-tiered approach is needed to incorporate wild coast attributes into conservation planning and protection of coastal areas. A coastal wildness designation is needed, as well as policies that manage for wildness attributes in existing protected areas.
Effect of concurrent mitral valve surgery for secondary mitral regurgitation upon mortality after aortic valve replacement or coronary artery bypass surgery
Authors: Asher Shyamal R. , Ong Chin Siang , Malapero Raymond J. , Heydarpour Mahyar , Malzberg Gregory W. , Shahram Jasmine T. , Nguyen Thy B. , Shook Douglas C. , Shernan Stanton K. , Shekar Prem , Kaneko Tsuyoshi , Citro Rodolfo , Muehlschlegel Jochen D. , Body Simon C.
Published: September 2023

Objectives

It is uncertain whether concurrent mitral valve repair or replacement for moderate or greater secondary mitral regurgitation at the time of coronary artery bypass graft or aortic valve replacement surgery improves long-term survival.

Methods

Patients undergoing coronary artery bypass graft and/or aortic valve replacement surgery with moderate or greater secondary mitral regurgitation were reviewed. The effect of concurrent mitral valve repair or replacement upon long-term mortality was assessed while accounting for patient and operative characteristics and mitral regurgitation severity.

Results

Of 1,515 patients, 938 underwent coronary artery bypass graft or aortic valve replacement surgery alone and 577 underwent concurrent mitral valve repair or replacement. Concurrent mitral valve repair or replacement did not alter the risk of postoperative mortality for patients with moderate mitral regurgitation (hazard ratio = 0.93; 0.75–1.17) or more-than-moderate mitral regurgitation (hazard ratio = 1.09; 0.74–1.60) in multivariable regression. Patients with more-than-moderate mitral regurgitation undergoing coronary artery bypass graft-only surgery had a survival advantage from concurrent mitral valve repair or replacement in the first two postoperative years (P = 0.028) that did not persist beyond that time. Patients who underwent concurrent mitral valve repair or replacement had a higher rate of later mitral valve operation or reoperation over the five subsequent years (1.9% vs. 0.2%; P = 0.0014) than those who did not.

Conclusions

These observations suggest that mitral valve repair or replacement for more-than-moderate mitral regurgitation at the time of coronary artery bypass grafting may be reasonable in a suitably selected coronary artery bypass graft population but not for aortic valve replacement, with or without coronary artery bypass grafting. Our findings are supportive of 2021 European guidelines that severe secondary mitral regurgitation “should” or be “reasonabl[y]” intervened upon at the time of coronary artery bypass grafting but do not support 2020 American guidelines for performing mitral valve repair or replacement concurrent with aortic valve replacement, with or without coronary artery bypass grafting.
Impact of a heart failure multidisciplinary clinic on the reduction of healthcare-related events and costs: the GEstIC study
Authors: Rego Rita , Pereira Nuno , Pinto António , Pereira Sofia , Marques Irene
Published: September 2023

Introduction

Heart failure (HF) is the leading cause of hospitalization in the elderly in developed countries and significantly impacts public health expenditures. Patients with HF usually have associated comorbidities that require multidisciplinary management. This study aims to demonstrate the benefits of a multidisciplinary clinic in reducing all-cause hospitalizations and HF events (HF hospitalizations and urgent HF visits) in a real-world setting. Finally, the study evaluates the associated costs of HF events.

Methods

This observational study included patients admitted to GEstIC, a multidisciplinary Portuguese HF clinic, from January 2013 to February 2019, who had one-year follow-up. Hospitalizations and HF events, total days spent in the hospital during HF hospitalizations, and HF events-related costs, in the year before and the year after GEstIC admission, were compared.

Results

Of the 487 patients admitted to the GEstIC, 287 were eligible for the study sample. After one year of HF patients' multidisciplinary management at GEstIC, there was a 53.7% reduction in all-cause hospitalizations (462 vs. 214), a 71.7% reduction in HF hospitalizations (392 vs. 111), and a 39.1% reduction in urgent HF visits (87 vs. 53). As a result, there was a significant decrease of 12.6 days in the length of hospital stay due to HF per patient (15.6 vs. 3.0, p < 0.001). This translated into the release of 9.9 hospital beds in the year following admission to GEstIC. The average total savings associated with the reduction of HF events was €5,439.77 per patient (6,774.15 vs. 1,334.38, p < 0.001), representing a total cost reduction of €1,561,213. Furthermore, the significant reduction in the number of all events was independent of the patient's left ventricular ejection fraction (LVEF).

Discussion

Significant reductions in all-cause and HF hospitalizations and urgent HF visits were observed with the implementation of this multidisciplinary clinic for HF patients' management. This was particularly important for patients with LVEF >40%. Before GEstIC, there was no medical intervention to improve the prognosis of these patients. The reduction of over one million euros in health-related costs after only one year of person-centered multidisciplinary management highlights the need to replicate this approach in other national healthcare institutions.
A retrospective audit of young adults who received permanent pacemakers at a teaching hospital in the Western Cape, South Africa
Authors: Hugo Elrike , Doubell Anton , Steyn Jan , Moses Jane
Published: September 2023

Introduction

While most pacemaker implantations occur in older individuals, younger patients also receive pacemakers. In these, degenerative conduction system disease is less likely to be the cause of atrioventricular block (AVB), with other diseases being more common. There is, however, a paucity of data on this group as well as on younger pacemaker recipients that have undergone pacemaker implantation for reasons other than AVB. The aim of this study was to perform an audit of young adult permanent pacemaker recipients.

Method

This was a retrospective record review, conducted in the Division of Cardiology at Tygerberg Hospital, Cape Town, South Africa. We included 169 adult patients between the ages of 18 and 60, who received permanent pacemakers between 2010 and 2020. A subgroup analysis of patients 55 years and younger was also performed.

Results

Third degree AVB was the most common indication for pacemaker implantation (n = 115; 68%), followed by high degree AVB (n = 23; 13.6%) and sick sinus syndrome (SSS; n = 14; 8.3%). A specific underlying cause for conduction system abnormalities was found in only 25.4% of patients (n = 43), with most of them being 55 years or younger (n = 32; 30.8% of patients ≤ 55 years). Specific causes that were identified included prosthetic valve implantation and/or valve repair (n = 14; 8.3%), myocardial infarction (n = 6; 3.6%), cardiac sarcoidosis (n = 5; 3.0%), coronary artery bypass grafting (n = 3; 1.8%), cardiomyopathy (n = 2; 1.2%), muscular dystrophy (n = 2; 1.2%), congenital heart disease (ventricular septal defect; atrioventricular septal defect; Tetralogy of Fallot; bicuspid aortic valve; n = 6; 3.6%), acute myocarditis (n = 1; 0.6%), atrial myxoma removal (n = 1; 0.6%), planned AV node ablation (n = 2; 1.2%), and following a previous stab in the chest (n = 1; 0.6%).

Conclusion

Given that the mean age of our study population was high, the low number of identified underlying causes in the whole cohort (≤60 years) may reflect some AVB due to age related degeneration of the conductions system in the patients 56 to 60 years age, but also raises the possibility that these patients may be less likely to be extensively investigated for an underlying cause than those ≤55 years, where diseases such as sarcoidosis were more readily confirmed. As access to advanced diagnostic tools improves, the percentage of young pacemaker recipients with an underlying cause identified may increase.
Clinical outcomes of takotsubo syndrome in patients with cancer: a systematic review and meta-analysis
Authors: Osawa Takumi , Tajiri Kazuko , Ieda Masaki , Ishizu Tomoko
Published: September 2023

Background

Recent studies suggested a relationship between Takotsubo syndrome (TTS) and malignancy. However, clinical outcomes of TTS associated with cancer have not been assessed completely. This study was aimed to investigate the outcomes of patients with TTS and cancer.

Methods

We performed a systematic review and meta-analysis to evaluate the clinical outcomes of TTS in patients with and without malignancy. We systematically reviewed and analyzed 14 studies (189,210 patients) published in PubMed and Cochrane Library databases until December 2022. The primary outcome was all-cause mortality at the longest follow-up.

Results

The prevalence of current or previous malignancy in patients with TTS was 8.7% (16,461 patients). Patients with TTS and malignancy demonstrated a higher risk of mortality at the longest follow-up than those with TTS alone (odds ratio [OR], 2.41; 95% confidence interval [CI]; 1.95–2.98; P < 0.001). Moreover, cancer was significantly associated with an increased risk of in-hospital or 30-day mortality (OR 2.36; 95% CI, 1.67–3.33; P < 0.001), shock (OR 1.42; 95% CI, 1.30–1.55; P < 0.001), mechanical respiratory support (OR 1.68; 95% CI, 1.59–1.77; P < 0.001), arrhythmia (OR 1.27; 95% CI, 1.21–1.34; P < 0.001), and major adverse cardiac events (OR 1.69; 95% CI, 1.18–2.442; P < 0.001).

Conclusions

This study revealed significant associations between previous or active cancer and an increased risk of all-cause mortality and in-hospital adverse events in patients with TTS.
The environmental footprint of Holocene societies: a multi-temporal study of trails in the Judean Desert, Israel
Authors: Nir Nadav , Davidovich Uri , Ullman Micka , Schütt Brigitta , Stahlschmidt Mareike C.
Published: September 2023

The global distribution of footpaths and their inferred antiquity implies that they are widespread spatial and temporal anthropogenic landscape units. Arid environments are of special interest for investigating historically used footpaths, as older routes may preserve better due to minimal modern impact and slower pedogenic processes. Here we examine footpaths in the Judean Desert of the southern Levant, a human hotspot throughout the Holocene. We studied one modern and two archaeological footpaths (one attributed to the Early Bronze Age and one to the Roman period) using micromorphology, bulk samples laboratory analysis, and remote sensing. Field observations and color analysis indicate that footpaths in the studied arid limestone environment can result in brighter surface color than their non-path surroundings. Similar color changes are reflected using both laboratory analysis and high-resolution remote sensing, where the difference is also significant. Microscopically, the footpaths studied tend to be less porous and with fewer biogenic activities when compared to their non-path controls. However, the two ancient footpaths studied do exhibit minimal indicators of biogenic activities that are not detectable in the modern footpath sample. Our study shows that high-resolution remote sensing coupled with micromorphology, while using appropriate local modern analogies, can help to locate and assess both the environmental effect and the antiquity of footpaths.
Design of integral sliding mode control and fuzzy adaptive PI control for voltage stability in DC microgrid
Authors: Zhang Xinyu , Zhao Yan , Jiang He , Wei Mofan
Published: September 2023

This paper introduces a novel control strategy that merges integral sliding mode control with fuzzy adaptive PI control. This hybrid approach maximizes the benefits of both techniques to ensure voltage stability in DC microgrid. Firstly, a mathematical model characterizes the DC–DC boost converter. Subsequently, a sliding surface, incorporating an integral term, is employed to regulate the converter’s output voltage and current errors. To address uncertainties stemming from factors like input inductance and output capacitance, a dynamic sliding mode controller is formulated. The proposed sliding mode control scheme significantly reduces the time required for voltage stability, curbs system oscillations, and showcases robustness. Furthermore, the inclusion of fuzzy adaptive PI control aids in refining the voltage deviation signal and droop resistance. This enhancement improves the precision of the error tracking system. Finally, the effectiveness of this strategy is demonstrated through MATLAB simulations, supported by experimental validation and analysis. The findings reveal that this control strategy efficiently accelerates the convergence of DC microgrid voltage to a stable state.
A genome-wide association study coupled with machine learning approaches to identify influential demographic and genomic factors underlying Parkinson’s disease
Authors: Rahman Md Asad , Liu Jinling
Published: September 2023

Background: Despite the recent success of genome-wide association studies (GWAS) in identifying 90 independent risk loci for Parkinson’s disease (PD), the genomic underpinning of PD is still largely unknown. At the same time, accurate and reliable predictive models utilizing genomic or demographic features are desired in the clinic for predicting the risk of Parkinson’s disease.

Methods: To identify influential demographic and genomic factors associated with PD and to further develop predictive models, we utilized demographic data, incorporating 200 variables across 33,473 participants, along with genomic data involving 447,089 SNPs across 8,840 samples, both derived from the Fox Insight online study. We first applied correlation and GWAS analyses to find the top demographic and genomic factors associated with PD, respectively. We further developed and compared a variety of machine learning (ML) models for predicting PD. From the developed ML models, we performed feature importance analysis to reveal the predictability of each demographic or the genomic input feature for PD. Finally, we performed gene set enrichment analysis on our GWAS results to identify PD-associated pathways.

Results: In our study, we identified both novel and well-known demographic and genetic factors (along with the enriched pathways) related to PD. In addition, we developed predictive models that performed robustly, with AUC = 0.89 for demographic data and AUC = 0.74 for genomic data. Our GWAS analysis identified several novel and significant variants and gene loci, including three intron variants in LMNA (p-values smaller than 4.0e-21) and one missense variant in SEMA4A (p-value = 1.11e-26). Our feature importance analysis from the PD-predictive ML models highlighted some significant and novel variants from our GWAS analysis (e.g., the intron variant rs1749409 in the RIT1 gene) and helped identify potentially causative variants that were missed by GWAS, such as rs11264300, a missense variant in the gene DCST1, and rs11584630, an intron variant in the gene KCNN3.

Conclusion: In summary, by combining a GWAS with advanced machine learning models, we identified both known and novel demographic and genomic factors as well as built well-performing ML models for predicting Parkinson’s disease.
Melanin: a unifying theory of disease as exemplified by Parkinson’s, Alzheimer’s, and Lewy body dementia
Authors: Berg Stacie Z. , Berg Jonathan
Published: September 2023

Melanin, a ubiquitous dark pigment, plays important roles in the immune system, including scavenging reactive oxygen species formed in response to ultraviolet radiation absorption, absorbing metals, thermal regulation, drug uptake, innate immune system functions, redox, and energy transduction. Many tissue types, including brain, heart, arteries, ovaries, and others, contain melanin. Almost all cells contain precursors to melanin. A growing number of diseases in which there is a loss of melanin and/or neuromelanin are increasingly thought to have infectious etiologies, for example, Alzheimer’s disease (AD), Parkinson’s disease (PD), Lewy Body Dementia (LBD), and vitiligo. AD, PD, LBD, and vitiligo have been linked with herpesvirus, which enters melanosomes and causes apoptosis, and with gut dysbiosis and inflammation. Herpesvirus is also linked with gut dysbiosis and inflammation. We theorize that under normal healthy states, melanin retains some of the energy it absorbs from electromagnetic radiation, which is then used to fuel cells, and energy from ATP is used to compliment that energy supply. We further theorize that loss of melanin reduces the energy supply of cells, which in the case of AD, PD, and LBD results in an inability to sustain immune system defenses and remove the plaques associated with the disease, which appear to be part of the immune system’s attempt to eradicate the pathogens seen in these neurodegenerative diseases. In addition, in an attempt to explain why removing these plaques does not result in improvements in cognition and mood and why cognitions and moods in these individuals have ebbs and flows, we postulate that it is not the plaques that cause the cognitive symptoms but, rather, inflammation in the brain resulting from the immune system's response to pathogens. Our theory that energy retained in melanin fuels cells in an inverse relationship with ATP is supported by studies showing alterations in ATP production in relationship to melanin levels in melanomas, vitiligo, and healthy cells. Therefore, alteration of melanin levels may be at the core of many diseases. We propose regulating melanin levels may offer new avenues for treatment development.
A brain tumor computer-aided diagnosis method with automatic lesion segmentation and ensemble decision strategy
Authors: Yu Liheng , Yu Zekuan , Sun Linlin , Zhu Li , Geng Daoying
Published: September 2023

Objectives

Gliomas and brain metastases (Mets) are the most common brain malignancies. The treatment strategy and clinical prognosis of patients are different, requiring accurate diagnosis of tumor types. However, the traditional radiomics diagnostic pipeline requires manual annotation and lacks integrated methods for segmentation and classification. To improve the diagnosis process, a gliomas and Mets computer-aided diagnosis method with automatic lesion segmentation and ensemble decision strategy on multi-center datasets was proposed.

Methods

Overall, 1,022 high-grade gliomas and 775 Mets patients’ preoperative MR images were adopted in the study, including contrast-enhanced T1-weighted (T1-CE) and T2-fluid attenuated inversion recovery (T2-flair) sequences from three hospitals. Two segmentation models trained on the gliomas and Mets datasets, respectively, were used to automatically segment tumors. Multiple radiomics features were extracted after automatic segmentation. Several machine learning classifiers were used to measure the impact of feature selection methods. A weight soft voting (RSV) model and ensemble decision strategy based on prior knowledge (EDPK) were introduced in the radiomics pipeline. Accuracy, sensitivity, specificity, and the area under the receiver operating characteristic curve (AUC) were used to evaluate the classification performance.

Results

The proposed pipeline improved the diagnosis of gliomas and Mets with ACC reaching 0.8950 and AUC reaching 0.9585 after automatic lesion segmentation, which was higher than those of the traditional radiomics pipeline (ACC:0.8850, AUC:0.9450).

Conclusion

The proposed model accurately classified gliomas and Mets patients using MRI radiomics. The novel pipeline showed great potential in diagnosing gliomas and Mets with high generalizability and interpretability.
Long-term impacts of conservation pasture management in manuresheds on system-level microbiome and antibiotic resistance genes
Authors: Seyoum Mitiku Mihiret , Ashworth Amanda J. , Feye Kristina M. , Ricke Steven C. , Owens Phillip R. , Moore Philip A. , Savin Mary
Published: September 2023

Animal manure improves soil fertility and organic carbon, but long-term deposition may contribute to antibiotic resistance genes (ARGs) entering the soil-water environment. Additionally, long-term impacts of applying animal manure to soil on the soil-water microbiome, a crucial factor in soil health and fertility, are not well understood. The aim of this study is to assess: (1) impacts of long-term conservation practices on the distribution of ARGs and microbial dynamics in soil, and runoff; and (2) associations between bacterial taxa, heavy metals, soil health indicators, and ARGs in manures, soils, and surface runoff in a study following 15 years of continuous management. This management strategy consists of two conventional and three conservation systems, all receiving annual poultry litter. High throughput sequencing of the 16S ribosomal RNA was carried out on samples of cattle manure, poultry litter, soil, and runoff collected from each manureshed. In addition, four representative ARGs (intl1, sul1, ermB, and blactx-m-32) were quantified from manures, soil, and runoff using quantitative PCR. Results revealed that conventional practice increased soil ARGs, and microbial diversity compared to conservation systems. Further, ARGs were strongly correlated with each other in cattle manure and soil, but not in runoff. After 15-years of conservation practices, relationships existed between heavy metals and ARGs. In the soil, Cu, Fe and Mn were positively linked to intl1, sul1, and ermB, but trends varied in runoff. These findings were further supported by network analyses that indicated complex co-occurrence patterns between bacteria taxa, ARGs, and physicochemical parameters. Overall, this study provides system-level linkages of microbial communities, ARGs, and physicochemical conditions based on long-term conservation practices at the soil-water-animal nexus.
Genomic insights into antimicrobial potential and optimization of fermentation conditions of pig-derived Bacillus subtilis BS21
Authors: Wu Di , Fu Linglong , Cao Yunhe , Dong Na , Li Defa
Published: September 2023

Bacillus spp. have been widely used as probiotic supplements in animal feed as alternatives to antibiotics. In the present study, we screened a Bacillus subtilis strain named BS21 from pig feces. Antimicrobial activities, whole genome mining and UHPLC-MS/MS analysis were used to explore its antimicrobial mechanism. Strain BS21 showed Significant growth inhibition against a variety of animal pathogens, including Escherichia coli, Salmonella enterica Pullorum, Salmonella enterica Typhimurium, Citrobacter rodentium, Shigella flexneri and Staphylococcus aureus. Seven gene clusters involved in antimicrobial biosynthesis of secondary metabolites were encoded by strain BS21 genome, including four non-ribosomal peptides (bacillibactin, fengycin, surfactin and zwittermicin A), one ribosomal peptide (subtilosin A), one dipeptide (bacilysin) and one polyketide (bacillaene). Among them, production of surfactin, fengycin, bacillibactin, bacilysin and bacillaene was detected in the supernatant of B. subtilis strain BS21. To develop the potential application of BS21 in animal production, medium components and fermentation parameters optimization was carried out using response surface methodology (RSM). Production of antimicrobial secondary metabolites of strain BS21 was increased by 43.4%, and the best medium formula after optimization was corn flour 2%, soybean meal 1.7% and NaCl 0.5% with optimum culture parameters of initial pH 7.0, temperature 30°C, rotating speed at 220 rpm for 26 h. Our results suggested that strain BS21 has the potential for large-scale production and application as a potential source of probiotics and alternative to antibiotics for animal production.
Novel strains of a pandemic plant virus, tomato spotted wilt orthotospovirus, increase vector fitness and modulate virus transmission in a resistant host
Authors: Chinnaiah Senthilraja , Gautam Saurabh , Herron Benjamin , Workneh Fekede , Rush Charles M. , Gadhave Kiran R.
Published: September 2023

Tomato spotted wilt orthotospovirus (TSWV) is one of the most successful pandemic agricultural pathogens transmitted by several species of thrips in a persistent propagative manner. Current management strategies for TSWV heavily rely on growing single-gene resistant cultivars of tomato (“Sw-5b” gene) and pepper (“Tsw” gene) deployed worldwide. However, the emergence of resistance-breaking strains (RB) in recent years has compounded the threat of TSWV to agricultural production worldwide. Despite this, an extensive study on the thrips transmission biology of RB strains is currently lacking. It is also unclear whether mutualistic TSWV-thrips interactions vary across different novel strains with disparate geographical origins. To address both critical questions, we studied whether and how four novel RB strains of TSWV (two sympatric and two allopatric), along with a non-RB strain, impact western flower thrips (WFT) fitness and whether this leads to differences in TSWV incidence, symptom severity (virulence), and virus accumulation in two differentially resistant tomato cultivars. Our findings show that all RB strains increased WFT fitness by prolonging the adult period and increasing fecundity compared to non-RB and non-viruliferous controls, regardless of the geographical origin of strains or the TSWV titers in individual thrips, which were substantially low in allopatric strains. TSWV accumulation in thrips varied at different developmental stages and was unrelated to the infected tissues from which thrips acquired the virus. However, it was significantly positively correlated to that in WFT-inoculated susceptible plants, but not the resistant ones. The TSW incidences were high in tomato plants infected with all RB strains, ranging from 80% to 90% and 100% in resistant and susceptible plants, respectively. However, TSW incidence in the non-RB-infected susceptible tomato plants was 80%. Our findings provide new insights into how novel strains of TSWV, by selectively offering substantial fitness benefits to vectors, modulate transmission and gain a potential epidemiological advantage over non-RB strains. This study presents the first direct evidence of how vector-imposed selection pressure, besides the one imposed by resistant cultivars, may contribute to the worldwide emergence of RB strains.
Genome-wide transcriptional analyses of Clarireedia jacksonii isolates associated with multi-drug resistance
Authors: Huangwei Zhang , Peiyuan Jin , Yixuan Kong , Zhimin Yang , Yuxin Zhou , Geunhwa Jung , Jian Hu
Published: September 2023

Emerging multidrug resistance (MDR) in Clarireedia spp. is a huge challenge to the management of dollar spot (DS) disease on turfgrass. Insight into the molecular basis of resistance mechanisms may help identify key molecular targets for developing novel effective chemicals. Previously, a MDR isolate (LT586) of C. jacksonii with significantly reduced sensitivities to propiconazole, boscalid, and iprodione, and a fungicide-sensitive isolate (LT15) of the same species were isolated from creeping bentgrass (Agrostis stolonifera L.). The present study aimed to further explore the molecular mechanisms of resistance by using genome-wide transcriptional analyses of the two isolates. A total of 619 and 475 differentially expressed genes (DEGs) were significantly down and upregulated in the MDR isolate LT586, compared with the sensitive isolate LT15 without fungicide treatment. Three hundreds and six and 153 DEGs showed significantly lower and higher expression in the MDR isolate LT586 than those in the sensitive isolate LT15, which were commonly induced by the three fungicides. Most of the 153 upregulated DEGs were xenobiotic detoxification-related genes and genes with transcriptional functions. Fifty and 17 upregulated DEGs were also commonly observed in HRI11 (a MDR isolate of the C. jacksonii) compared with the HRS10 (a fungicide-sensitive isolate of same species) from a previous study without and with the treatment of propiconazole, respectively. The reliability of RNA-seq data was further verified by qRT-PCR method using a few select potentially MDR-related genes. Results of this study indicated that there were multiple uncharacterized genes, possibly responsible for MDR phenotypes in Clarireedia spp., which may have important implications in understanding the molecular mechanisms underlying MDR resistance.
Behavioral and neuropathological characterization over the adult lifespan of the human tau knock-in mouse
Authors: Benskey Matthew J. , Panoushek Spencer , Saito Takashi , Saido Takaomi C. , Grabinski Tessa , Kanaan Nicholas M.
Published: September 2023

Tau is a microtubule-associated protein with a diverse functional repertoire linked to neurodegenerative disease. Recently, a human tau knock-in (MAPT KI) mouse was developed that may overcome many limitations associated with current animal models used to study tau. In MAPT KI mice, the entire murine Mapt gene was replaced with the human MAPT gene under control of the endogenous Mapt promoter. This model represents an ideal in vivo platform to study the function and dysfunction of human tau protein. Accordingly, a detailed understanding of the effects MAPT KI has on structure and function of the CNS is warranted. Here, we provide a detailed behavioral and neuropathological assessment of MAPT KI mice. We compared MAPT KI to wild-type (WT) C57BL/6j mice in behavioral assessments of anxiety, attention, working memory, spatial memory, and motor performance from 6 to 24 months (m) of age. Using immunohistological and biochemical assays, we quantified markers of glia (microglia, astrocytes and oligodendrocytes), synaptic integrity, neuronal integrity and the cytoskeleton. Finally, we quantified levels of total tau, tau isoforms, tau phosphorylation, and tau conformations. MAPT KI mice show normal cognitive and locomotor behavior at all ages, and resilience to mild age-associated locomotor deficits observed in WT mice. Markers of neuronal and synaptic integrity are unchanged in MAPT KI mice with advancing age. Glial markers are largely unchanged in MAPT KI mice, but glial fibrillary acidic protein is increased in the hippocampus of WT and MAPT KI mice at 24 m. MAPT KI mice express all 6 human tau isoforms and levels of tau remain stable throughout adulthood. Hippocampal tau in MAPT KI and WT mice is phosphorylated at serine 396/404 (PHF1) and murine tau in WT animals displays more PHF1 phosphorylation at 6 and 12 m. Lastly, we extended previous reports showing that MAPT KI mice do not display overt pathology. No evidence of other tau phosphorylation residues (AT8, pS422) or abnormal conformations (TNT2 or TOC1) associated with pathogenic tau were detected. The lack of overt pathological changes in MAPT KI mice make this an ideal platform for future investigations into the function and dysfunction of tau protein in vivo.
Case report: Giant atypical granular cell tumor of the median nerve
Authors: Liu Jun-Peng , Song Ling-Xie , Xu Zi-Yu , Wu Yue , Yao Xing-Chen , Li Meng , Du Xin-Ru
Published: September 2023

Granular cell tumors are extremely uncommon soft tissue neoplasms that mostly occur in the head and neck regions. Granular cell tumors are generally benign, asymptomatic, and rarely involve the median nerve. Due to the lack of awareness about granular cell tumors, they are easily misdiagnosed and mistreated in primary hospitals. Here, we report a giant atypical granular cell tumor located on the median nerve, approximately 12 cm in size, with unusual symptoms of median nerve damage. Magnetic resonance imaging revealed a fusiform mass that was hyperintense on T2-weighted images and iso-hypointense on T1-weighted images. The mass was subsequently biopsied and found to be a granular cell tumor. The tumor was resected, and a pathological examination was performed. Pathological examination revealed necrotic foci, abundant eosinophilic granules, pustular ovoid bodies, and multiple mitoses. Immunohistochemical staining revealed that the tumor cells were positive for S-100, CD68, SMA, SOX-10, Calretinin, and TFE3. The integrated diagnosis was an atypical granular cell tumor. To the best of our knowledge, this is the first report of an atypical granular cell tumor involving the median nerve. Furthermore, we comprehensively reviewed the existing literature to provide a concise summary of the diagnostic criteria, imaging findings, and pathological features of granular cell tumors. Given the high recurrence and metastasis rates of this disease, granular cell tumors of the median nerve should be considered when a patient presents with symptoms of median nerve impairment. The diagnosis of atypical granular cell tumors relies on pathological examination. In addition, extensive resection and long-term follow-up are necessary to improve prognosis.
The impact of automated writing evaluation on second language writing skills of Chinese EFL learners: a randomized controlled trial
Authors: Wei Ping , Wang Xiaosai , Dong Hui
Published: September 2023

Introduction

In the context of the burgeoning field of second language (L2) education, where proficient writing plays an integral role in effective language acquisition and communication, the ever-increasing technology development has influenced the trajectory of L2 writing development.

Methods

To address the need for enhanced writing skills among English as a Foreign Language (EFL) learners, this study investigates the efficacy of Automated Writing Evaluation (AWE) training. A randomized controlled trial employing repeated measures was conducted, involving a participant pool of 190 Chinese EFL students. The study comprehensively assessed the effects of AWE training, utilizing the Grammarly platform—an AI-driven program—on various dimensions of writing skills, encompassing task achievement, coherence and cohesion, lexicon, and grammatical accuracy. Control variables included writing self-efficacy and global English proficiency. Writing skills were evaluated through the administration of an International English Language Testing System (IELTS) writing sample test.

Results

The results unequivocally demonstrate that the experimental group consistently exhibited superior performance across all facets of writing skills compared to the control group. Furthermore, the predictive influence of pre-test scores was pronounced in task achievement, coherence and cohesion, and lexicon, highlighting the pivotal role of learners’ initial proficiency levels in shaping subsequent writing outcomes. Notably, the emergence of writing self-efficacy as a significant predictor of task achievement and coherence and cohesion underscores the role of learners’ beliefs and confidence in shaping their writing abilities.

Discussion

These findings conclusively suggest that Artificial Intelligence-based instructional programs, specifically AWE, hold the potential to effectively enhance second language writing skills, especially among learners with lower proficiency levels. This study carries crucial implications for EFL educators and researchers, advocating for the seamless integration of AWE into pedagogical strategies to foster a marked improvement in writing competence.
Neutral is not fair enough: testing the efficiency of different language gender-fair strategies
Authors: Spinelli Elsa , Chevrot Jean-Pierre , Varnet Léo
Published: September 2023

In many languages with grammatical gender, the use of masculine forms as a generic reference has been associated with a bias favoring masculine-specific representations. This article examines the efficiency of gender-fair forms, specifically gender-unmarked forms (neutralization strategy, e.g., “l'enfant”) and contracted double forms (re-feminization strategy, e.g., “un·e enfant”), in reducing gender biases in language. Extensive empirical research has shown that gender-fair forms have the potential to promote more gender-balanced representations. However, the relative efficiency of these strategies remains a subject of debate in the scientific literature. In order to explore these questions, two experiments were conducted in French. We analyzed the response times and percent correct scores using a sentence evaluation paradigm, where the participants had to decide whether a second sentence starting with a gendered personal pronoun (“il” or “elle”) was a sensible continuation of the first sentence written in a gender-fair form. Experiment 1 confirmed that gender-unmarked forms are not fully effective in neutralizing the masculine bias. In Experiment 2, a comparison was made between gender-unmarked forms and contracted double forms, to assess their respective abilities to generate more balanced representations. The findings indicated that contracted double forms are more effective in promoting gender balance compared to gender-unmarked forms. This study contributes to the existing scientific literature by shedding light on the relative efficiency of neutralization and re-feminization strategies in reducing gender biases in language. These results have implications for informing efforts to promote more inclusive and unbiased language practices.
The cognitive adaptability and resiliency employment screener (CARES): tool development and testing
Authors: Torralba Wilfredo Manuel R. , Savio Marlyn Thomas , Huang Xieyining , Manchanda Priyanka , Steiger Miriah , Bharucha Timir , López María Martín , Joyner Keanan J. , Guevara Rachel Lutz
Published: September 2023

Introduction

To decrease psychological risk for content moderators, the study initiated the first steps of developing a robust employment screening tool, namely, the Cognitive Adaptability and Resiliency Employment Screener.

Method

The study consisted of three phases with 4,839 total participants.

Results

In Phase 1, a set of 75 items were developed and tested via exploratory factor analysis, yielding three factors (i.e., Psychological Perseverance & Agility, Rumination & Emotional Lingering, and Expressiveness & Sociability) and also reducing the scale to 67 items. In Phase 2 through confirmatory factor analysis, the three-factor structure showed good fit (CFI = .93, RMSEA = .05) and demonstrated sufficient overall reliability. In Phase 3, the convergent validity and divergent validity of the tool were established relative to constructs such as resilience, cognitive control and flexibility, emotion regulation, and optimism.

Discussion

Altogether, the findings revealed that the scale demonstrated good psychometric properties that, pending future studies, may serve as a promising employment screener for content moderators.
Cross-sectional Ct distributions from qPCR tests can provide an early warning signal for the spread of COVID-19 in communities
Authors: Sharmin Mahfuza , Manivannan Mani , Woo David , Sorel Océane , Auclair Jared R. , Gandhi Manoj , Mujawar Imran
Published: September 2023

Background

SARS-CoV-2 PCR testing data has been widely used for COVID-19 surveillance. Existing COVID-19 forecasting models mainly rely on case counts obtained from qPCR results, even though the binary PCR results provide a limited picture of the pandemic trajectory. Most forecasting models have failed to accurately predict the COVID-19 waves before they occur. Recently a model utilizing cross-sectional population cycle threshold (Ct—the number of cycles required for the fluorescent signal to cross the background threshold) values obtained from PCR tests (Ct-based model) was developed to overcome the limitations of using only binary PCR results. In this study, we aimed to improve on COVID-19 forecasting models using features derived from the Ct-based model, to detect epidemic waves earlier than case-based trajectories.

Methods

PCR data was collected weekly at Northeastern University (NU) between August 2020 and January 2022. Campus and county epidemic trajectories were generated from case counts. A novel forecasting approach was developed by enhancing a recent deep learning model with Ct-based features and applied in Suffolk County and NU campus. For this, cross-sectional Ct values from PCR data were used to generate Ct-based epidemic trajectories, including effective reproductive rate (Rt) and incidence. The improvement in forecasting performance was compared using absolute errors and residual squared errors with respect to actual observed cases at the 7-day and 14-day forecasting horizons. The model was also tested prospectively over the period January 2022 to April 2022.

Results

Rt curves estimated from the Ct-based model indicated epidemic waves 12 to 14 days earlier than Rt curves from NU campus and Suffolk County cases, with a correlation of 0.57. Enhancing the forecasting models with Ct-based information significantly decreased absolute error (decrease of 49.4 and 221.5 for the 7 and 14-day forecasting horizons) and residual squared error (40.6 and 217.1 for the 7 and 14-day forecasting horizons) compared to the original model without Ct features.

Conclusion

Ct-based epidemic trajectories can herald an earlier signal for impending epidemic waves in the community and forecast transmission peaks. Moreover, COVID-19 forecasting models can be enhanced using these Ct features to improve their forecasting accuracy. In this study, we make the case that public health agencies should publish Ct values along with the binary positive/negative PCR results. Early and accurate forecasting of epidemic waves can inform public health policies and countermeasures which can mitigate spread.
The Budyko shape parameter as a descriptive index for streamflow loss
Authors: Tran Hoang , Yang Chen , Condon Laura E. , Maxwell Reed M.
Published: September 2023

Increases in evapotranspiration (ET) from global warming are decreasing streamflow in headwater basins worldwide. However, these streamflow losses do not occur uniformly due to complex topography. To better understand the heterogeneity of streamflow loss, we use the Budyko shape parameter (ω) as a diagnostic tool. We fit ω to 37-year of hydrologic simulation output in the Upper Colorado River Basin (UCRB), an important headwater basin in the US. We split the UCRB into two categories: peak watersheds with high elevation and steep slopes, and valley watersheds with lower elevation and gradual slopes. Our results demonstrate a relationship between streamflow loss and ω. The valley watersheds with greater streamflow loss have ω higher than 3.1, while the peak watersheds with less streamflow loss have an average ω of 1.3. This work highlights the use of ω as an indicator of streamflow loss and could be generalized to other headwater basin systems.
A comparative metabolomics analysis of domestic yak (Bos grunniens) milk with human breast milk
Authors: Li Wenhao , Zeng Weike , Zhang Yanping , Ma Zhijie , Fang Xingyan , Han Yingcang , Sun Yonggang , Jin Xiayang , Ma Liuyin
Published: September 2023

Yaks are tough animals living in Tibet’s hypoxic stress environment. However, the metabolite composition of yak milk and its role in hypoxic stress tolerance remains largely unexplored. The similarities and differences between yak and human milk in hypoxic stress tolerance are also unclear. This study explored yak colostrum (YC) and yak mature milk (YMM) using GC–MS, and 354 metabolites were identified in yak milk. A comparative metabolomic analysis of yak and human milk metabolites showed that over 70% of metabolites were species-specific. Yak milk relies mainly on essential amino acids- arginine and essential branched-chain amino acids (BCAAs): L-isoleucine, L-leucine, and L-valine tolerate hypoxic stress. To slow hypoxic stress, human breast milk relies primarily on the neuroprotective effects of non-essential amino acids or derivates, such as citrulline, sarcosine, and creatine. In addition, metabolites related to hypoxic stress were significantly enriched in YC than in YMM. These results reveal the unique metabolite composition of yak and human milk and provide practical information for applying yak and human milk to hypoxic stress tolerance.
Biological and molecular interactions between bell pepper endornavirus and two tobamoviruses
Authors: Escalante Cesar , Khankhum Surasak , Valverde Rodrigo A.
Published: September 2023

Peppers (Capsicum spp.) are native plants to the Americas. They are cultivated worldwide for direct human consumption and industrial purposes. Peppers can be infected by acute plant viruses, which cause a variety of diseases and crop losses. However, many Capsicum species can also be infected by persistent viruses. These are emerging viruses and they do not cause apparent disease and are transmitted only vertically. Using two near-isogenic lines of bell pepper cv. Marengo, biological and molecular interactions between the persistent virus bell pepper endornavirus (BPEV) and two acute viruses, pepper mild mottle virus (PMMoV) and tobacco mild green mosaic virus (TMGMV), were evaluated by symptom expression, enzyme-linked immunosorbent assay, and RT-qPCR. The relative titer of BPEV decreased at least two-fold at 14 days after infection when BPEV-infected plants were single infected with TMGMV or in mixed infection of PMMoV and TMGMV. The presence of BPEV was associated with symptom reduction in pepper plants infected with single and mixed infections of PMMoV and TMGMV. This suggests that the ubiquitous infection of BPEV may trigger the plant immune response, and therefore, BPEV is active when the plant is infected with PMMoV and/or TMGMV.