bluuebunny/crossref_metadata_2025 huggingface dataset:
Native T1 Mapping in Assessing Kidney Fibrosis for Patients With Chronic Glomerulonephritis
Authors: Wu Jianhua , Shi Zhaoyu , Zhang Yuan , Yan Jiaxin , Shang Fangfang , Wang Yao , Lu Huijian , Gu Hongmei , Dou Weiqiang , Wang Xinquan , Yuan Li
Published: October 2021

Purpose: To assess the utility of non-contrast enhanced native T1 mapping of the renal cortex in assessing renal fibrosis for patients with chronic glomerulonephritis (CGN).

Methods: A total of 119 patients with CGN and 19 healthy volunteers (HVs) were recruited for this study. Among these patients, 43 had undergone kidney biopsy measurements. Clinical information and biopsy pathological scores were collected. According to the results of the renal biopsy, the patients were classified into the high (25–50%), low (<25%) and no renal interstitial fibrosis (IF) (0%) groups. The correlations between the T1 value in the renal cortex and each of the clinical parameters were separately analyzed. The relationships between each fibrosis group and the T1 value were also evaluated and compared between groups. Binary logistic regression analysis was further used to determine the relationship between the T1 value and renal fibrosis. Receiver operating characteristic (ROC) curves were plotted to analyze the diagnostic value of the T1 value for renal fibrosis.

Results: Compared with those of the HVs, the T1 values were significantly higher in patients at all stages of chronic kidney disease (CKD) (all p < 0.05). Significant T1 differences were also revealed between patients with different stages of CKD (p < 0.05). Additionally, the T1 value correlated well with CKD stage (p < 0.05), except between CKD 2 and 3. In addition, the T1 value was positively correlated with cystatin C, neutrophil gelatinase-associated lipocalin, and serum creatinine and negatively correlated with hemoglobin, kidney length, estimated glomerular filtration rate and hematocrit (all p < 0.05). Compared with those of the no IF group, the T1 values were increased in the low- and high-IF groups (both p < 0.05). Logistic regression analysis showed that an elevated T1 value was an independent risk factor for renal fibrosis. ROC analysis suggested that the optimal critical value of T1 for predicting renal fibrosis was 1,695 ms, with a specificity of 0.778 and a sensitivity of 0.625.

Conclusion: Native T1 mapping demonstrated good diagnostic performance in evaluating renal function and was an effective noninvasive method for detecting renal fibrosis in CGN patients.
Metagenomics Analysis Reveals Compositional and Functional Differences in the Gut Microbiota of Red Swamp Crayfish, Procambarus clarkii, Grown on Two Different Culture Environments
Authors: Chen Xi , Fan Limin , Qiu Liping , Dong Xinxu , Wang Qing , Hu Gengdong , Meng Shunlong , Li Dandan , Chen Jiazhang
Published: October 2021

The structure and function of intestinal microorganisms are closely related to host metabolism, development, physiology, and health. The red swamp crayfish, Procambarus clarkii, is an important farmed aquatic species in China, which is grown in aquaculture ponds and rice paddy fields. Since these are two distinct cultivation environments with important differences in nutrient input and ecological community composition, we hypothesized that they may have different effects on the gut microbiota of the crayfish. Here, we sought to examine this hypothesis. To that aim, metagenomics analyses were applied to unveil the taxonomic composition and functional diversity of the microbiota in the intestines of red swamp crayfish grown in aquaculture ponds and rice-crayfish cultivation environments. The results showed that Firmicutes and Proteobacteria were the two most abundant microbial components. In addition, the relative abundance of bacterial and archaeal communities, but not that of fungal and viral communities, significantly differed between the two environments. The abundance of genes involved in pathways related to genetic information processing and human diseases was lower in the guts of red swamp crayfish grown in rice-crayfish cultivation environments. In particular, the abundance of two gene sets, K13730 and K08303, which are related to epithelial cell invasion by Listeria monocytogenes and Helicobacter pylori, respectively, decreased in this culture environment. In addition, the samples from rice-crayfish cultivation environments tended to have lower relative abundance of glycosyltransferases (GTs), which were the most abundant carbohydrate-active enzymes in the samples from both groups, higher abundance of glycoside hydrolases, and lower abundance of GT2.
Emerging Severe Acute Respiratory Syndrome Coronavirus 2 Mutation Hotspots Associated With Clinical Outcomes and Transmission
Authors: Pang Xianwu , Li Pu , Zhang Lifeng , Que Lusheng , Dong Min , Xie Bo , Wang Qihui , Wei Yinfeng , Xie Xing , Li Lanxiang , Yin Chunyue , Wei Liuchun , Huang Kexin , Hua Yiming , Zhou Qingniao , Li Yingfang , Yu Lei , Li Weidong , Mo Zengnan , Zhang Maosheng , Leng Jing , Hu Yanling
Published: October 2021

Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is the cause of the ongoing coronavirus disease 2019 (COVID-19) pandemic. Understanding the influence of mutations in the SARS-CoV-2 gene on clinical outcomes is critical for treatment and prevention. Here, we analyzed all high-coverage complete SARS-CoV-2 sequences from GISAID database from January 1, 2020, to January 1, 2021, to mine the mutation hotspots associated with clinical outcome and developed a model to predict the clinical outcome in different epidemic strains. Exploring the cause of mutation based on RNA-dependent RNA polymerase (RdRp) and RNA-editing enzyme, mutation was more likely to occur in severe and mild cases than in asymptomatic cases, especially A > G, C > T, and G > A mutations. The mutations associated with asymptomatic outcome were mainly in open reading frame 1ab (ORF1ab) and N genes; especially R6997P and V30L mutations occurred together and were correlated with asymptomatic outcome with high prevalence. D614G, Q57H, and S194L mutations were correlated with mild and severe outcome with high prevalence. Interestingly, the single-nucleotide variant (SNV) frequency was higher with high percentage of nt14408 mutation in RdRp in severe cases. The expression of ADAR and APOBEC was associated with clinical outcome. The model has shown that the asymptomatic percentage has increased over time, while there is high symptomatic percentage in Alpha, Beta, and Gamma. These findings suggest that mutation in the SARS-CoV-2 genome may have a direct association with clinical outcomes and pandemic. Our result and model are helpful to predict the prevalence of epidemic strains and to further study the mechanism of mutation causing severe disease.
Effective Plug-Ins for Reducing Inference-Latency of Spiking Convolutional Neural Networks During Inference Phase
Authors: Chen Xuan , Yuan Xiaopeng , Fu Gaoming , Luo Yuanyong , Yue Tao , Yan Feng , Wang Yuxuan , Pan Hongbing
Published: October 2021

Convolutional Neural Networks (CNNs) are effective and mature in the field of classification, while Spiking Neural Networks (SNNs) are energy-saving for their sparsity of data flow and event-driven working mechanism. Previous work demonstrated that CNNs can be converted into equivalent Spiking Convolutional Neural Networks (SCNNs) without obvious accuracy loss, including different functional layers such as Convolutional (Conv), Fully Connected (FC), Avg-pooling, Max-pooling, and Batch-Normalization (BN) layers. To reduce inference-latency, existing researches mainly concentrated on the normalization of weights to increase the firing rate of neurons. There are also some approaches during training phase or altering the network architecture. However, little attention has been paid on the end of inference phase. From this new perspective, this paper presents 4 stopping criterions as low-cost plug-ins to reduce the inference-latency of SCNNs. The proposed methods are validated using MATLAB and PyTorch platforms with Spiking-AlexNet for CIFAR-10 dataset and Spiking-LeNet-5 for MNIST dataset. Simulation results reveal that, compared to the state-of-the-art methods, the proposed method can shorten the average inference-latency of Spiking-AlexNet from 892 to 267 time steps (almost 3.34 times faster) with the accuracy decline from 87.95 to 87.72%. With our methods, 4 types of Spiking-LeNet-5 only need 24–70 time steps per image with the accuracy decline not more than 0.1%, while models without our methods require 52–138 time steps, almost 1.92 to 3.21 times slower than us.
Co-Occurrence of Myeloid and Lymphoid Neoplasms: Clinical Characterization and Impact on Outcome. A Single-Center Cohort Study
Authors: Bucelli Cristina , Fattizzo Bruno , Cattaneo Daniele , Giannotta Juri Alessandro , Barbullushi Kordelia , Pasquale Raffaella , Barozzi Enrico , Barbanti Maria Chiara , Pettine Loredana , Rossi Francesca Gaia , Reda Gianluigi , Cassin Ramona , Barcellini Wilma , Baldini Luca , Iurlo Alessandra
Published: October 2021

The co-occurrence of myeloid neoplasms and lymphoproliferative diseases (LPDs) has been epidemiologically described, particularly in myeloproliferative neoplasms (MPNs). However, the clinical features of these patients are poorly known. In this study, we evaluated a single-center cohort of 44 patients with a diagnosis of myeloid and LPD focusing on clinical features, therapy requirement, and outcome. The two diagnoses were concomitant in 32% of patients, while myeloid disease preceded LPD in 52% of cases (after a median of 37 months, 6–318), and LPD preceded myeloid neoplasm in 16% (after a median of 41 months, 5–242). The most prevalent LPD was non-Hodgkin lymphoma (50%), particularly lymphoplasmacytic lymphoma (54.5%), followed by chronic lymphocytic leukemia (27%), plasma cell dyscrasias (18.2%), and rarer associations such as Hodgkin lymphoma and Erdheim–Chester disease. Overall, 80% of BCR-ABL1-negative MPN patients required a myeloid-specific treatment and LPD received therapy in 45.5% of cases. Seven subjects experienced vascular events, 13 a grade >/= 3 infectious episode (9 pneumonias, 3 urinary tract infection, and 1 sepsis), and 9 developed a solid tumor. Finally, nine patients died due to solid tumor (four), leukemic progression (two), infectious complications (two), and brain bleeding (one). Longer survival was observed in younger patients (p = 0.001), with better performance status (p = 0.02) and in the presence of driver mutations (p = 0.003). Contrarily, a worse survival was significantly associated with the occurrence of infections (p < 0.0001). These data suggest that in subjects with co-occurrence of myeloid and lymphoid neoplasms, high medical surveillance for infectious complications is needed, along with patient education, since they may negatively impact outcome.
Analysis of Prognostic Alternative Splicing Reveals the Landscape of Immune Microenvironment in Thyroid Cancer
Authors: Wu Jian , Sun Yifang , Li Junzheng , Ai Maomao , You Lihua , Shi Jianbo , Yu Feng
Published: October 2021

Background

The incidence of thyroid cancer (THCA) continues to increase in recent decades. Accumulating evidence showed that the unbalanced alternative splicing (AS) promotes the occurrence of cancers and leads to poor prognosis of patients. However, the research on alternative splicing events in THCA is lacking, and its underlying mechanism is not fully understood. This study identifies a novel prognostic signature based on AS events to reveal the relationship of AS with tumor immune microenvironment.

Methods

Based on the AS data, transcriptional data, and clinical information, the differentially expressed alternative splicings (DEASs) were screened out. Least absolute shrinkage and selection operator (LASSO) regression and multi-Cox regression analyses were employed to identify prognostic results related to AS events and establish a prognostic signature. The predictive ability of the signature was assessed by Kaplan-Meier (K-M) survival curve, risk plots, and receiver operating characteristic (ROC) curves. Furthermore, correlations between tumor-infiltrating immune cells, immune checkpoints, immune score and prognostic signature were analyzed.

Results

According to the LASSO regression analysis, a total of five AS events were selected to construct the signature. K-M survival curve showed that the higher the risk score, the worse the OS of the patients. Risk plots further confirmed this result. ROC curves indicated the high predictive efficiency of the prognostic signature. As for tumor immune microenvironment, patients in the high-risk group had a higher proportion of immune cells, including plasma cell, CD8+ T cell, macrophages (M0 and M2), and activated dendritic cell. Immune checkpoint proteins, such as PDCD1LG2, HAVCR2, CD274, etc., were significantly higher in the high-risk group. We also found that the ESTIMATE score, stromal score, and immune score were lower in the high-risk group, while the result of tumor purity was the opposite.

Conclusions

Collectively, a prognostic signature consisting of five AS events in THCA was established. Furthermore, there was an inextricable correlation between immune cell infiltration, immune checkpoint proteins, and AS events. This study will provide a basis for THCA immunotherapy in the future.
Factors Influencing the Acceptance of Pediatric Telemedicine Services in China: A Cross-Sectional Study
Authors: Shi Jingjin , Yan Xueming , Wang Miao , Lei Ping , Yu Guangjun
Published: October 2021

Background: Pediatrician workforce shortages have aroused great attention from health authorities in China. Telemedicine services have been known to enhance the management of children's health, yet the rate of adoption and usage in Chinese hospitals still at a quite low level, and the factors influencing the acceptance of telemedicine services remains unclear.

Objective: The purpose of this empirical study was to evaluate the reliability and validity of a technology acceptance measurement instrument applied in healthcare, to investigate the perception of telemedicine services on the provider-side and demand-side, and to determine the factors that may drive individuals to adopt telemedicine services.

Methods: A cross-sectional survey study based at Shanghai Children's Hospital, Shanghai Jiao Tong University, was conducted in March 2020. A total of 456 valid responses were obtained by convenience sampling. The internal consistency of items was assessed by Cronbach's alpha (α), composite reliability (CR) and average variance extracted (AVE) to evaluate both the reliability and validity of the questionnaire. Structural equation modeling analysis was used to test and verify the interrelationships among relevant variables.

Results: Price value is the strongest predictor (β = 0.30, p = 0.02), facilitating conditions (β = 0.28, p = 0.01) and hedonic motivation (β = 0.13, p = 0.04) also have significantly positive direct effects on telemedicine acceptance. The results showed the perception of child patients' families were significantly more acceptable to telemedicine services than pediatricians (t = −2.99, p < 0.01). Participants with no prior experience and lower education may be more willing to adopt telemedicine.

Conclusion: Telemedicine will likely continue to have an integral role in pediatric health care delivery, and the findings can assist policy makers and hospital administrators in determining the more valued characteristics of telemedicine services from a behavioral perspective. Future attention will be paid to the pricing, training and service quality of telemedicine in China.
Protective Effect of Oxytocin on Ventilator-Induced Lung Injury Through NLRP3-Mediated Pathways
Authors: Yang Xiaomei , An Xiaona , Wang Cheng , Gao Feng , Lin Yicheng , Chen Wenjing , Deng Qiming , Xu Dongsheng , Li Shengqiang , Zhang Peng , Sun Baozhu , Hou Yuedong , Wu Jianbo
Published: October 2021

Mechanical ventilation is an indispensable life-support treatment for acute respiratory failure in critically ill patients, which is generally believed to involve uncontrolled inflammatory responses. Oxytocin (OT) has been reported to be effective in animal models of acute lung injury. However, it is not clear whether Oxytocin has a protective effect on ventilator-induced lung injury (VILI). Therefore, in this study, we aimed to determine whether OT can attenuate VILI and explore the possible mechanism of this protection. To this end, a mouse VILI model was employed. Mice were pretreated with OT 30 min before the intraperitoneal injection of saline or nigericin and ventilation for 4 h, after which they were euthanized. Pathological changes, lung wet/dry (W/D) weight ratio, myeloperoxidase (MPO) activity, the levels of inflammatory cytokines [i.e., interleukin (IL)-1β, IL-6, and IL-18] in lung tissues and bronchoalveolar lavage fluid (BALF), and expression of NLRP3, Toll-like receptor 4 (TLR4), caspase-1, nuclear factor (NF)-κB, and GSDMD in lung tissues were measured. OT treatment could reduce pathological injury, the W/D ratio, and MPO activity in VILI mice. Our data also indicated that OT administration alleviated the expression of TLR4/My-D88 and the activation of NF-κB, NLRP3, and caspase-1 in lung tissues from the VILI mice model. Furthermore, OT also decreased the levels of IL-1β, IL-6, and IL-18 in the bronchoalveolar lavage fluid. Moreover, the OT administration may alleviate the activation of GSDMD partially through its effects on the NLRP3-mediated pathway. Collectively, OT exerted a beneficial effect on VILI by downregulating TLR4-and NLRP3-mediated inflammatory pathways.
Evaluation of CML TKI Induced Cardiovascular Toxicity and Development of Potential Rescue Strategies in a Zebrafish Model
Authors: Cheng Shan , Jin Pan , Li Heying , Pei Duanqing , Shu Xiaodong
Published: October 2021

Tyrosine kinase inhibitors (TKIs) to BCR-ABL1 have been successfully used to treat chronic myeloid leukemia (CML), however, multiple TKI-associated adverse events have been reported and become an emerging problem in patients. The mechanisms of TKI-induced toxicity are not fully understood and it remains challenging to predict potential cardiovascular toxicity of a compound. In this study, we established a zebrafish model to evaluate potential in vivo cardiovascular toxicity of TKIs. We treated the endothelium labeled Tg(kdrl:EGFP) transgenic zebrafish embryos with TKIs then performed confocal imaging to evaluate their vascular structure and function. We found that among FDA approved CML TKIs, ponatinib (the only approved TKI that is efficacious to T315I mutation) is the most toxic one. We then evaluated safety profiles of several clinical stage kinase inhibitors that can target T315I and found that HQP1351 treatment leads to vasculopathies similar to those induced by ponatinib while the allosteric ABL inhibitor asciminib does not induce noticeable cardiovascular defects, indicating it could be a promising therapeutic reagent for patients with T315I mutation. We then performed proof-of-principle study to rescue those TKI-induced cardiovascular toxicities and found that, among commonly used anti-hypertensive drugs, angiotensin receptor blockers such as azilsartan and valsartan are able to reduce ponatinib or HQP1351 induced cardiovascular toxicities. Together, this study establishes a zebrafish model that can be useful to evaluate cardiovascular toxicity of TKIs as well as to develop strategies to minimize TKI-induced adverse events.
Absolute and Relative Judgment Accuracy: Early Childhood Teachers' Competence to Evaluate Children's Mathematical Skills
Authors: Hosoya Georg , Blömeke Sigrid , Eilerts Katja , Jenßen Lars , Eid Michael
Published: October 2021

This study examined absolute and relative judgment accuracies of German early childhood (EC) teachers with respect to the mathematical skills of the children under their supervision. The two types of judgment accuracies are crucial prerequisites for pacing activities in EC education and offering differentiated educational activities adapted to individual skill levels of children. Data from 39 EC teachers and 268 children were analyzed using multilevel modeling. Teachers rated the skills of children on a structured observation instrument (“Kinder Diagnose Tool,” KiDiT). Children were assessed on their mathematical skills with a standardized test (“Mathematische Basiskompetenzen im Kindesalter,” MBK-0). On average, 65% of the variation in judgments of teachers on the KiDiT could be explained by MBK-0 scores of children, which suggest that teachers are—on average—able to rank children within their groups. Teachers were also able to judge the mathematical level of skills of children as assessed by the MBK-0. Neither mathematical content knowledge (MCK) of teachers nor their mathematics pedagogical content knowledge (MPCK) or general pedagogical knowledge (GPK) moderated the relationship between judgments of teachers and test scores of children or the relationship between the level of the judgments and the level of test scores. Conclusions for future research and practice are drawn.
Influence of the GABA Receptor Subunit Gene Polymorphism and Childhood Sexual Abuse on Processing Speed in Major Depression and Suicide Attempt
Authors: Yin Honglei , Guo Jia , Xin Qianqian , Zheng Shuqiong , Xue Xiang , Li Enze , Liu Ting , Yan Na , Keilp John , Mann J. John
Published: October 2021

Background: Suicide is moderately heritable and also more common in those who report childhood abuse. Previously, it was found that allele A of GABRG2 (GABA A receptor subunit gamma2) polymorphism rs211034 was protective in a suicide attempt (SA). Hence, it was proposed that rs211034 may interact with childhood trauma to influence cognitive deficits related to SA or depression risk. Genetic variants may predict the benefits of certain cognitive treatments.

Methods: A total of 52 individuals who had attempted suicide, 59 individuals with major depressive disorder (MDD) or bipolar depression who had not previously attempted suicide, and 90 healthy volunteers were subjected to the modified Suicide Stroop task and were clinically assessed using the Childhood Trauma Questionnaire (CTQ) and Hamilton Depression Scale-24 items (HAMD-24). rs211034 was genotyped using Sanger sequencing.

Results: After correcting for covariates, depressed participants displayed longer reaction times for all emotional conditions, including suicide-related words, compared with healthy controls. Depressed suicide attempters displayed longer reaction times for negative words than depressed non-attempters. Depressed non-attempters displayed higher interference scores for negative words compared with healthy controls. There was an interaction between rs211034 risk allele and the effects of reported childhood sexual abuse (CSA) on reaction time for all emotional words and suicide-related words. Carriers of the rs211034 risk allele A exhibited shorter reaction times, but the protective effects of this allele were eliminated in those exposed to reported CSA.

Conclusion: Only limited results were found regarding effects of a past suicide attempt on response times to emotional and suicide-related words, but there was an overall effect of major depression on slower response time. Protective genetic effects of the rs211034 A allele on this slowing were eliminated in those with a history of sexual abuse during childhood. Further research is needed to better characterize the mechanisms underlying the effects of childhood trauma on these genetic effects.
Is Weekly Frequency of Yoga Practice Sufficient? Physiological Effects of Hatha Yoga Among Healthy Novice Women
Authors: Csala Barbara , Szemerszky Renáta , Körmendi János , Köteles Ferenc , Boros Szilvia
Published: October 2021

Beneficial physical and physiological health outcomes of yoga practice are well-supported by empirical data. However, whether weekly frequency of training is sufficient to evoke positive changes, is still an open question. The present intervention study investigated the effects of 10 weekly sessions of beginner level hatha yoga with respect to indicators of physical fitness and physiological markers. 82 young women (mean age of 22.0 ± 3.83 years) participated in the study. The yoga group (N = 49) attended a yoga course consisting of 10 sessions (1.5 h each) on a weekly basis. The control group (N = 33) did not receive any intervention. BMI, body fat percentage, balance (one-leg-stand test with open and closed eyes, functional reach test), flexibility (side bend test, modified sit and reach test) core muscle strength (plank test) as well as resting heart rate (HR), and heart rate variability (HRV) were assessed 1 week before and after the course. Both frequentist and Bayesian analysis showed an improvement in flexibility and balance in the yoga group compared to the control group. The yoga group showed also increased core muscle strength. No changes with respect to BMI, body fat percentage, resting HR and HRV were found. Ninety minute beginner level hatha yoga classes were characterized by 93.39 HR and 195 kcal energy consumption on average. The present findings suggest that weekly setting of a 10-session long hatha yoga training leads to improvements in balance, flexibility and core muscle strength among healthy young women. However, for changes in BMI, body fat percentage, resting HR and HRV longer, and/or more intense interventions are needed.
Different Methods for Determining the Dimensionality of Multivariate Models
Authors: Rutledge Douglas N. , Roger Jean-Michel , Lesnoff Matthieu
Published: October 2021

A tricky aspect in the use of all multivariate analysis methods is the choice of the number of Latent Variables to use in the model, whether in the case of exploratory methods such as Principal Components Analysis (PCA) or predictive methods such as Principal Components Regression (PCR), Partial Least Squares regression (PLS). For exploratory methods, we want to know which Latent Variables deserve to be selected for interpretation and which contain only noise. For predictive methods, we want to ensure that we include all the variability of interest for the prediction, without introducing variability that would lead to a reduction in the quality of the predictions for samples other than those used to create the multivariate model.
Local Excision ± Chemoradiotherapy vs. Total Mesorectal Excision for Early Rectal Cancer: Case-Matched Analysis of Long-Term Results
Authors: Pacevicius Julius , Petrauskas Vidas , Pilipavicius Lukas , Dulskas Audrius
Published: October 2021

Background: Our aim was to compare the bowel function and oncologic outcomes following these two treatment modalities.

Materials and methods: This was a single-center study with 67 patients included between 2009 and 2018. A total of 32 patients underwent total mesorectal excision (TME) group and 35 transanal local excisions (LE) ± chemoradiation. We performed a case-matched analysis: we matched the patients by age, cancer stage, and comorbidities. Duration of operation, postoperative complications, length of hospital stay, and long-term functional and oncological outcomes were compared. We calculated oncological outcomes using Kaplan–Meier Cox diagrams. In addition, we used a low anterior resection syndrome (LARS) score for the bowel function assessment.

Results: Mean operation time in the LE group was 58.8 ± 45 min compared with the TME group that was 121.1 ± 42 min (p = 0.032). Complications were seen in 5.7% in LE group and 15.62% in TME group (p = 0.043). ~85.2% of the patients had no LARS in LE group compared with 54.5% in TME group (p = 0.018). Minor LARS was 7.4% in LE group compared with 31.8% in TME group (p = 0.018); major LARS was 7.4 and 13.7%, respectively (p = 0.474). Hospital stay was 2.77 days in LE group compared with 9.21 days in TME group (p = 0.036). The overall survival was 68.78 months in LE group compared with 74.81 months in TME group (p = 0.964).

Conclusion: Our results of a small sample size showed that local excision ± chemoradiation is a rather safe method for early rectal cancer compared with gold standard treatment. In addition, better bowel function is preserved with less postoperative complications and shorter hospital stays.
Interaction Between Florfenicol and Doxycycline Involving Cytochrome P450 3A in Goats (Capra hricus)
Authors: Wang Xiaojing , Yang Yaqin , Martínez María-Aránzazu , Martínez Marta , Lopez-Torres Bernardo , Martínez-Larrañaga María-Rosa , Wang Xu , Anadón Arturo , Ares Irma
Published: October 2021

When two drugs are combined, drug-drug interactions (DDI) often occur. Metabolic DDI usually occur due to inhibition of the metabolism of one drug by the other. This leads to an increase in the plasma concentration of the drug whose metabolism is inhibited. The objective of this research study was to verify the DDI risk of two antibacterial, florfenicol (FF) and doxycycline (DOX) due to metabolism. Because food containing residues of any pharmacologically active substance could potentially constitute a public health hazard, we selected a food producing animal, goat, goat liver microsomes and recombinant metabolic enzymes, for in vivo and in vitro metabolism studies. In vitro experiments showed that CYP3A was the key enzyme subfamily in FF metabolism, DOX slowed down FF metabolism and R440 was possibly the key amino acid in the metabolic interaction between FF and DOX. In vivo studies in the goats showed that DOX inhibited up-regulation of CYP3A24 gene expression produced by FF; in liver and kidney, DOX slightly slowed down FF metabolism. Quantitative prediction of DDI risk suggest that when DOX is used in combination with FF in veterinary medicine, may result in a clinical significant increase of FF plasma and tissue concentrations, resulting a prevalence of harmful tissue residues of medicinal products in the food chain. Through our experimentation, when DOX is used in combination with FF, the withdrawal period of FF in the kidney was extended by 1 day. Otherwise, an appropriate withdrawal period (20 days) of FF was established for FF and DOX combined use to ensure that the animal can be safely slaughtered for food.
Incidence and Risk Factors for Surgical Site Infections Following Oromaxillofacial Oncologic Surgery in Dogs
Authors: Rigby Brittney E. , Malott Kevin , Hetzel Scott J. , Soukup Jason W.
Published: October 2021

Antibiotic stewardship in veterinary medicine is essential to help prevent resistant bacterial infections. Critical evaluation into the benefits of prophylactic use of antibiotics during veterinary surgical procedures is under reported and additional investigation is warranted. The objectives of this paper were to determine the incidence of surgical site infection in dogs that underwent oromaxillofacial oncologic surgery and to identify risk factors for the development of surgical site infection. In this retrospective cohort study including 226 dogs surgically treated for oromaxillofacial tumors between January 1, 1997 and December 31, 2018, the incidence of surgical site infection was determined to be 7.5%. Univariable logistical regression models were used to evaluate potential risk factors for development of surgical site infections including signalment, tumor type, antibiotic protocol, time under anesthesia, location of surgical procedure (dental suite vs. sterile operating room), specific comorbidities, and surgical margins obtained. Anesthetic events lasting greater than 6 h were significantly associated with development of infection. Signalment, comorbidities, administration of anti-inflammatory and immunosuppressive medications, tumor type, histological margin evaluation, surgical procedure location, and antibiotic protocols were not significant contributors to development of infection. Use of antibiotic therapy in this cohort was not protective against development of infection and may not be routinely indicated for all oromaxillofacial oncologic surgeries despite common promotion of its use and the contaminated nature of the oral cavity. Anesthetic time significantly contributed towards the development of infection and use of perioperative antibiotics for surgical procedures lasting >6 h may be routinely warranted.
Co-Application of Charcoal and Wood Ash to Improve Potassium Availability in Tropical Mineral Acid Soils
Authors: Paramisparam Puvan , Ahmed Osumanu Haruna , Omar Latifah , Ch’ng Huck Ywih , Johan Prisca Divra , Hamidi Nur Hidayah
Published: October 2021

Potassium (K) is a macronutrient required by plants for energy production, enzyme activation, formation of cell wall, production of protein, and photosynthesis. However, K in the soil solution is leached from the rhizosphere before it interacts with soil colloids because of the abundance of kaolinite clay minerals in mineral acid soils such as Ultisols and Oxisols. These soils are highly weathered, low in organic matter, low in pH, but high aluminium (Al), and iron (Fe) ions. As a result, K becomes unavailable for plants, and this affects crop production and farmers’ profitability. This problem has steered the attention to the application of amendments to minimise K loss. Animal manures, plant residues, and composts applications are some of the corrective measures taken to improve the K availability in tropical acid soils. However, there is dearth of information on co-application of charcoal and wood ash as soil amendments to improve the K availability and the changes they cause to the dynamic equilibrium of K in mineral acid soils. Hence, this review discusses the dynamics, availability of K, and proposed mechanisms involved when charcoal and wood ash are used to amend tropical acid soils. The optimisation and understanding of the role of charcoal and wood ash co-application as soil amendments have potential benefits to improve the K availability and physicochemical properties of mineral acid soils.
Calystegia soldanella Extract Exerts Anti-Oxidative and Anti-Inflammatory Effects via the Regulation of the NF-κB/Nrf-2 Pathways in Mouse Macrophages
Authors: Eom Taekil , Kim In-Hye , Kim Hyung-Joo , Choi YounHee , Nam Taek-Jeong
Published: October 2021

Plant polyphenols are widely used to treat various inflammatory diseases, owing to their ability to suppress reactive oxygen species production and the expression of inflammatory cytokines. Herein, we investigated phenolic compounds from Calystegia soldanella using UPLC Q-TOF MS/MS and their antioxidative and anti-inflammatory activities were analyzed. The C. soldanella ethyl acetate fraction (CsEF) had the strongest antioxidative activity, given its high polyphenol compound content. It also exhibited anti-inflammatory effects, inhibiting the production of inflammatory cytokines such as NO, PGE2, IL-1β, IL-6, and TNF-α in LPS-stimulated mouse macrophages. CsEF activated the nuclear transcription factor Nrf-2, thereby upregulating antioxidant enzymes such as HO-1 and NQO-1 and inhibiting NF-κB expression, which in turn, suppressed the expression of COX-2, iNOS, and inflammatory cytokines, ultimately exerting anti-inflammatory effects. Further, UPLC-Q-TOF-MS/MS was used to analyze the polyphenol compound contents in CsEF. The quercetin glycosides isoquercitrin and quercitrin were the primary flavonoid compounds, while the caffeic acid derivatives, chlorogenic acid and dicaffeoylquinic acid, were the primary phenolic acids. Thus, C. soldanella, which had only a limited use thus far as a medicinal plant, may serve as a natural medicinal resource for treating inflammatory diseases.
Effects of Introducing Rest Intervals in Functional Fitness Training
Authors: Hernández-Lougedo Juan , Cimadevilla-Pola Eduardo , Fernández-Rodríguez Tomás , Guodemar-Pérez Jesús , Otero-Campos Álvaro , del Carmen Lozano-Estevan María , Cañuelo-Márquez Ana María , de Jesús-Franco Fernando , Garnacho-Castaño Manuel V. , García-Fernández Pablo , Maté-Muñoz José Luis
Published: October 2021

Background: Functional Fitness Training (FFT) is a new exercise modality prioritizing functional multi-joint movements executed at high intensity as a circuit. Objective: To examine the impacts of introducing rest intervals in a FFT workout compared to “rounds for time” (RFT) FFT. Materials and Methods: Participants were 25 resistance-trained adults who completed two FFT workouts 1 week apart. The study design was crossover such that in a given session half the participants completed the standard and the other half the adapted FFT (FFTadapted). The workouts consisted of the same exercises (circuit of four rounds of exercises), but one (FFTadapted) included preset rest intervals (three sets of 1 min after each completed round). Before and after the workouts, countermovement jump ability and blood lactate were measured. Heart rate (HR) and ratings of perceived exertion (RPE) were measured post-exercise. Results: For both the standard and adapted protocols, mean HR was 90% age-predicted maximum. Final RPE was also similar for both workouts (~15–15.5) and indicated a “hard” work intensity. Both FFTs took the same time to complete (~13 min). Furthermore, no significant differences were observed in jump ability between FFTs. In contrast, lactate (15.11 ± 3.64 vs. 13.48 ± 3.64 mmol·L−1, p < 0.05), measured 3 min post-exercise, was significantly lower in FFTadapted. Conclusions: In FFTadapted, there was a significant reduction in RPE and blood lactate concentrations after exercise, while there were no significant differences in either HR or jumping ability, compared to a FFT workout in RFT methodology.
HinPhish: An Effective Phishing Detection Approach Based on Heterogeneous Information Networks
Authors: Guo Bingyang , Zhang Yunyi , Xu Chengxi , Shi Fan , Li Yuwei , Zhang Min
Published: October 2021

Internet users have suffered from phishing attacks for a long time. Attackers deceive users through malicious constructed phishing websites to steal sensitive information, such as bank account numbers, website usernames, and passwords. In recent years, many phishing detection solutions have been proposed, which mainly leverage whitelists or blacklists, website content, or side channel-based techniques. However, with the continuous improvement of phishing technology, current methods have difficulty in achieving effective detection. Hence, in this paper, we propose an effective phishing website detection approach, which we call HinPhish. HinPhish extracts various link relationships from webpages and uses domains and resource objects to construct a heterogeneous information network. HinPhish applies a modified algorithm to leverage the characteristics of different link types in order to calculate the phish-score of the target domain on the webpage. Moreover, HinPhish not only improves the accuracy of detection, but also can increase the phishing cost for attackers. Extensive experimental results demonstrate that HinPhish can achieve an accuracy of 0.9856 and F1-score of 0.9858.
Bioactive Metabolites Produced by Cyanobacteria for Growth Adaptation and Their Pharmacological Properties
Authors: Nandagopal Pavitra , Steven Anthony Nyangson , Chan Liong-Wai , Rahmat Zaidah , Jamaluddin Haryati , Mohd Noh Nur Izzati
Published: October 2021

Cyanobacteria are the most abundant oxygenic photosynthetic organisms inhabiting various ecosystems on earth. As with all other photosynthetic organisms, cyanobacteria release oxygen as a byproduct during photosynthesis. In fact, some cyanobacterial species are involved in the global nitrogen cycles by fixing atmospheric nitrogen. Environmental factors influence the dynamic, physiological characteristics, and metabolic profiles of cyanobacteria, which results in their great adaptation ability to survive in diverse ecosystems. The evolution of these primitive bacteria resulted from the unique settings of photosynthetic machineries and the production of bioactive compounds. Specifically, bioactive compounds play roles as regulators to provide protection against extrinsic factors and act as intracellular signaling molecules to promote colonization. In addition to the roles of bioactive metabolites as indole alkaloids, terpenoids, mycosporine-like amino acids, non-ribosomal peptides, polyketides, ribosomal peptides, phenolic acid, flavonoids, vitamins, and antimetabolites for cyanobacterial survival in numerous habitats, which is the focus of this review, the bioactivities of these compounds for the treatment of various diseases are also discussed.
Chronic Study on Brainwave Authentication in a Real-Life Setting: An LSTM-Based Bagging Approach
Authors: Yang Liuyin , Libert Arno , Van Hulle Marc M.
Published: October 2021

With the advent of the digital age, concern about how to secure authorized access to sensitive data is increasing. Besides traditional authentication methods, there is an interest in biometric traits such as fingerprints, the iris, facial characteristics, and, recently, brainwaves, primarily based on electroencephalography (EEG). Current work on EEG-based authentication focuses on acute recordings in laboratory settings using high-end equipment, typically equipped with 64 channels and operating at a high sampling rate. In this work, we validated the feasibility of EEG-based authentication in a real-world, out-of-laboratory setting using a commercial dry-electrode EEG headset and chronic recordings on a population of 15 healthy people. We used an LSTM-based network with bootstrap aggregating (bagging) to decode our recordings in response to a multitask scheme consisting of performed and imagined motor tasks, and showed that it improved the performance of the standard LSTM approach. We achieved an authentication accuracy, false acceptance rate (FAR), and false rejection rate (FRR) of 92.6%, 2.5%, and 5.0% for the performed motor task; 92.5%, 2.6%, and 4.9% for the imagined motor task; and 93.0%, 1.9%, and 5.1% for the combined tasks, respectively. We recommend the proposed method for time- and data-limited scenarios.
Combining Hypermethylated RASSF1A Detection Using ddPCR with miR-371a-3p Testing: An Improved Panel of Liquid Biopsy Biomarkers for Testicular Germ Cell Tumor Patients
Authors: Lobo João , van Zogchel Lieke M. J. , Nuru Mohammed G. , Gillis Ad J. M. , van der Schoot C. Ellen , Tytgat Godelieve A. M. , Looijenga Leendert H. J.
Published: October 2021

The classical serum tumor markers used routinely in the management of testicular germ cell tumor (TGCT) patients—alpha fetoprotein (AFP) and human chorionic gonadotropin (HCG)—show important limitations. miR-371a-3p is the most recent promising biomarker for TGCTs, but it is not sufficiently informative for detection of teratoma, which is therapeutically relevant. We aimed to test the feasibility of hypermethylated RASSF1A (RASSF1AM) detected in circulating cell-free DNA as a non-invasive diagnostic marker of testicular germ cell tumors, combined with miR-371a-3p. A total of 109 serum samples of patients and 29 sera of healthy young adult males were included, along with representative cell lines and tumor tissue samples. We describe a novel droplet digital polymerase chain reaction (ddPCR) method for quantitatively assessing RASSF1AM in liquid biopsies. Both miR-371a-3p (sensitivity = 85.7%) and RASSF1AM (sensitivity = 86.7%) outperformed the combination of AFP and HCG (sensitivity = 65.5%) for TGCT diagnosis. RASSF1AM detected 88% of teratomas. In this representative cohort, 14 cases were negative for miR-371a-3p, all of which were detected by RASSF1AM, resulting in a combined sensitivity of 100%. We have described a highly sensitive and specific panel of biomarkers for TGCT patients, to be validated in the context of patient follow-up and detection of minimal residual disease.
Oncomine™ Comprehensive Assay v3 vs. Oncomine™ Comprehensive Assay Plus
Authors: Vestergaard Lau K. , Oliveira Douglas N. P. , Poulsen Tim S. , Høgdall Claus K. , Høgdall Estrid V.
Published: October 2021

The usage of next generation sequencing in combination with targeted gene panels has enforced a better understanding of tumor compositions. The identification of key genomic biomarkers underlying a disease are crucial for diagnosis, prognosis, treatment and therapeutic responses. The Oncomine™ Comprehensive Assay v3 (OCAv3) covers 161 cancer-associated genes and is routinely employed to support clinical decision making for a therapeutic course. An improved version, Oncomine™ Comprehensive Assay Plus (OCA-Plus), has been recently developed, covering 501 genes (144 overlapping with OCAv3) in addition to microsatellite instability (MSI) and tumor mutational burden (TMB) assays in one workflow. The validation of MSI and TMB was not addressed in the present study. However, the implementation of new assays must be validated and confirmed across multiple samples before it can be introduced into a clinical setting. Here, we report the comparison of DNA sequencing results from 50 ovarian cancer formalin-fixed, paraffin-embedded samples subjected to OCAv3 and OCA-Plus. A validation assessment of gene mutations identified using OCA-Plus was performed on the 144 overlapping genes and 313,769 intersecting nucleotide positions of the OCAv3 and the OCA-Plus. Our results showed a 91% concordance within variants classified as likely-pathogenic or pathogenic. Moreover, results showed that a region of PTEN is poorly covered by the OCA-Plus assay, hence, we implemented rescue filters for those variants. In conclusion, the OCA-Plus can reflect the mutational profile of genomic variants compared with OCAv3 of 144 overlapping genes, without compromising performance.
Facile Preparation of Carbon Nitride-ZnO Hybrid Adsorbent for CO2 Capture: The Significant Role of Amine Source to Metal Oxide Ratio
Authors: Anuar Siti Aishah , Ahmad Khairul Naim , Al-Amiery Ahmed , Masdar Mohd Shahbudin , Wan Isahak Wan Nor Roslam
Published: October 2021

The presence of CO2 in gaseous fuel and feedstock stream of chemical reaction was always considered undesirable. High CO2 content will decrease quality and heating value of gaseous fuel, such as biohydrogen, which needs a practical approach to remove it. Thus, this work aims to introduce the first C3N4-metal oxide hybrid for the CO2 cleaning application from a mixture of CO2-H2 gas. The samples were tested for their chemical and physical properties, using field emission scanning electron microscopy (FESEM), transmission electron microscopy (TEM), physical adsorption analysis (BET), fourier-transform infrared (FTIR), x-ray diffraction (XRD), and x-ray photoelectron spectroscopy (XPS). The CO2 capacity test was carried out by means of a breakthrough test at 1 atm and 25° C using air as a desorption system. Among the samples, amine/metal oxide mass ratio of 2:1 (CNHP500-2(2-1)) showed the best performance of 26.9 wt. % (6.11 mmol/g), with a stable capacity over 6 consecutive cycles. The hybrid sample also showed 3 times better performance than the raw C3N4. In addition, it was observed that the hydrothermal C3N4 synthesis method demonstrated improved chemical properties and adsorption performance than the conventional dry pyrolysis method. In summary, the performance of hybrid samples depends on the different interactive factors of surface area, pore size and distribution, basicity, concentration of amine precursors, ratio of amines precursors to metal oxide, and framework stability.