bluuebunny/crossref_metadata_2025 huggingface dataset:
Supplementary Figure S6 from Rapalogs Efficacy Relies on the Modulation of Antitumor T-cell Immunity
Authors: Beziaud Laurent , Mansi Laura , Ravel Patrice , Marie-Joseph Elodie Lauret , Laheurte Caroline , Rangan Laurie , Bonnefoy Francis , Pallandre Jean-René , Boullerot Laura , Gamonet Clémentine , Vrecko Sindy , Queiroz Lise , Maurina Tristan , Mouillet Guillaume , Hon Thierry Nguyen Tan , Curtit Elsa , Royer Bernard , Gaugler Béatrice , Bayry Jagadeesh , Tartour Eric , Thiery-Vuillemin Antoine , Pivot Xavier , Borg Christophe , Godet Yann , Adotévi Olivier
Published: April 2023

This file contains in vivo studies in renal and mammary tumor models: Supplementary figure 6
Supplementary Figure S8 from Upregulation of Cytosolic Phosphoenolpyruvate Carboxykinase Is a Critical Metabolic Event in Melanoma Cells That Repopulate Tumors
Authors: Li Yong , Luo Shunqun , Ma Ruihua , Liu Jing , Xu Pingwei , Zhang Huafeng , Tang Ke , Ma Jingwei , Zhang Yi , Liang Xiaoyu , Sun Yanling , Ji Tiantian , Wang Ning , Huang Bo
Published: April 2023

Supplementary Figure S8. A schematic was drawn to show metabolic pathway in melanoma TRCs.
Supplementary Figure S1 from Rapalogs Efficacy Relies on the Modulation of Antitumor T-cell Immunity
Authors: Beziaud Laurent , Mansi Laura , Ravel Patrice , Marie-Joseph Elodie Lauret , Laheurte Caroline , Rangan Laurie , Bonnefoy Francis , Pallandre Jean-René , Boullerot Laura , Gamonet Clémentine , Vrecko Sindy , Queiroz Lise , Maurina Tristan , Mouillet Guillaume , Hon Thierry Nguyen Tan , Curtit Elsa , Royer Bernard , Gaugler Béatrice , Bayry Jagadeesh , Tartour Eric , Thiery-Vuillemin Antoine , Pivot Xavier , Borg Christophe , Godet Yann , Adotévi Olivier
Published: April 2023

this file contains the gating strategy: Supplementary figure 1
Supplementary Tables S1-S4 from The Proliferative Activity of Mammary Epithelial Cells in Normal Tissue Predicts Breast Cancer Risk in Premenopausal Women
Authors: Huh Sung Jin , Oh Hannah , Peterson Michael A. , Almendro Vanessa , Hu Rong , Bowden Michaela , Lis Rosina L. , Cotter Maura B. , Loda Massimo , Barry William T. , Polyak Kornelia , Tamimi Rulla M.
Published: April 2023

The percentage of p27+ cells by breast tissue type (S1); The percentage of ER+ cells by breast tissue type (S2); The percentage of Ki67+ cells by breast tissue type (S3); Spearman correlations between markers in normal breast tissue in the Nurses' Health Study and the Nurses' Health Study II (S4).
Supplementary Materials and Methods, Supplementary Tables 1 and 2, and Supplementary Figures 1 through 3 from Deguelin Analogue SH-1242 Inhibits Hsp90 Activity and Exerts Potent Anticancer Efficacy with Limited Neurotoxicity
Authors: Lee Su-Chan , Min Hye-Young , Choi Hoon , Bae Song Yi , Park Kwan Hee , Hyun Seung Yeob , Lee Ho Jin , Moon Jayoung , Park Shin-Hyung , Kim Jun Yong , An Hongchan , Park So-Jung , Seo Ji Hae , Lee Seungbeom , Kim Young-Myeong , Park Hyun-Ju , Lee Sang Kook , Lee Jeewoo , Lee Jeeyeon , Kim Kyu-Won , Suh Young-Ger , Lee Ho-Young
Published: April 2023

Supplementary Materials and Methods. Supplementary Table 1. The acquisition of drug resistance in several drug resistant cells (designated '/R') upon corresponding anticancer drug treatment. Supplementary Table 2. Docking and scoring known Hsp90 inhibitors into the C-terminal ATP binding pocket of Hsp90. Supplementary Figure 1. Chemical structure of SH-1242. Supplementary Figure 2. Inhibitory effect of SH-1242 on the viability of a panel of human lung cancer cells with or without anticancer drug resistance. Supplementary Figure 3. Minimal involvement of ROS in the regulation of Akt phosphorylation and apoptosis induction mediated by SH-1242 treatment.
Supplemental figures from The E3-ligase E6AP Represses Breast Cancer Metastasis via Regulation of ECT2-Rho Signaling
Authors: Mansour Mariam , Haupt Sue , Chan Ai-Leen , Godde Nathan , Rizzitelli Alexandra , Loi Sherene , Caramia Franco , Deb Siddhartha , Takano Elena A. , Bishton Mark , Johnstone Cameron , Monahan Brendon , Levav-Cohen Yarra , Jiang Yong-Hui , Yap Alpha S. , Fox Stephen , Bernard Ora , Anderson Robin , Haupt Ygal
Published: April 2023

supplemental figures
Tables S1-S3 from Therapeutic Targeting of Tumor-Derived R-Spondin Attenuates β-Catenin Signaling and Tumorigenesis in Multiple Cancer Types
Authors: Chartier Cecile , Raval Janak , Axelrod Fumiko , Bond Chris , Cain Jennifer , Dee-Hoskins Cristina , Ma Shirley , Fischer Marcus M. , Shah Jalpa , Wei Jie , Ji May , Lam Andrew , Stroud Michelle , Yen Wan-Ching , Yeung Pete , Cancilla Belinda , O'Young Gilbert , Wang Min , Kapoun Ann M. , Lewicki John , Hoey Timothy , Gurney Austin
Published: April 2023

Supplemental Tables include a list and brief description of xenograft models used in the study, the RSPO1-4 gene expression profile and beta-catenin activation status of all xenograft models, and the microarray analysis for 4 CRC xenograft models after treatment with anti-RSPO3 antibody.
Suppl. materials from Non–Small Cell Lung Cancer Cells Acquire Resistance to the ALK Inhibitor Alectinib by Activating Alternative Receptor Tyrosine Kinases
Authors: Isozaki Hideko , Ichihara Eiki , Takigawa Nagio , Ohashi Kadoaki , Ochi Nobuaki , Yasugi Masayuki , Ninomiya Takashi , Yamane Hiromichi , Hotta Katsuyuki , Sakai Katsuya , Matsumoto Kunio , Hosokawa Shinobu , Bessho Akihiro , Sendo Toshiaki , Tanimoto Mitsune , Kiura Katsuyuki
Published: April 2023

Suppl. materials
Supplemental Figure Legends from Cdx2 Expression and Intestinal Metaplasia Induced by H. pylori Infection of Gastric Cells Is Regulated by NOD1-Mediated Innate Immune Responses
Authors: Asano Naoki , Imatani Akira , Watanabe Tomohiro , Fushiya Jun , Kondo Yutaka , Jin Xiaoyi , Ara Nobuyuki , Uno Kaname , Iijima Katsunori , Koike Tomoyuki , Strober Warren , Shimosegawa Tooru
Published: April 2023

Supplementary Figure Legends
Supplementary Figure S2 from Hypoxia-Induced Epithelial-to-Mesenchymal Transition in Hepatocellular Carcinoma Induces an Immunosuppressive Tumor Microenvironment to Promote Metastasis
Authors: Ye Long-Yun , Chen Wei , Bai Xue-Li , Xu Xing-Yuan , Zhang Qi , Xia Xue-Feng , Sun Xu , Li Guo-Gang , Hu Qi-Da , Fu Qi-Han , Liang Ting-Bo
Published: April 2023

CCL20 and HIF-1α are expressed at higher levels at the tumor edge.
Table S1 from Formation of Renal Cysts and Tumors in Vhl/Trp53-Deficient Mice Requires HIF1α and HIF2α
Authors: Schönenberger Désirée , Harlander Sabine , Rajski Michal , Jacobs Robert A. , Lundby Anne-Kristine , Adlesic Mojca , Hejhal Tomas , Wild Peter J. , Lundby Carsten , Frew Ian J.
Published: April 2023

Lists of Hif1a and Hif2a dependent genes induced by Vhl deletion in primary renal epithelial cells
Supplementary Table 10 from MCAM and LAMA4 Are Highly Enriched in Tumor Blood Vessels of Renal Cell Carcinoma and Predict Patient Outcome
Authors: Wragg Joseph W. , Finnity Jonathan P. , Anderson Jane A. , Ferguson Henry J.M. , Porfiri Emilio , Bhatt Rupesh I. , Murray Paul G. , Heath Victoria L. , Bicknell Roy
Published: April 2023

Supplementary Table 10: Key clinical data for clear cell RCC cohort 3 showing overall survival (OS).
Supplementary Table S2 from Measurement of Endogenous versus Exogenous Formaldehyde–Induced DNA–Protein Crosslinks in Animal Tissues by Stable Isotope Labeling and Ultrasensitive Mass Spectrometry
Authors: Lai Yongquan , Yu Rui , Hartwell Hadley J. , Moeller Benjamin C. , Bodnar Wanda M. , Swenberg James A.
Published: April 2023

2 ppm Rat Exposure Results.
Table S1 from Molecular Pathology of Patient Tumors, Patient-Derived Xenografts, and Cancer Cell Lines
Authors: Guo Sheng , Qian Wubin , Cai Jie , Zhang Likun , Wery Jean-Pierre , Li Qi-Xiang
Published: April 2023

Table S1. List of cell lines mentioned/described in this study
Supplementary Figures S1-S5 from A Myc Activity Signature Predicts Poor Clinical Outcomes in Myc-Associated Cancers
Authors: Jung MoonSun , Russell Amanda J. , Liu Bing , George Joshy , Liu Pei Yan , Liu Tao , DeFazio Anna , Bowtell David D.L. , Oberthuer André , London Wendy B. , Fletcher Jamie I. , Haber Michelle , Norris Murray D. , Henderson Michelle J.
Published: April 2023

Comparison of MYCN and MYC expression levels between MYCN amplified and non-MYCN amplified (non-MNA) neuroblastomas (S1); Prognostic significance of MYCN and MYC genes in non-MYCN amplified neuroblastoma (S2); Relationship between signature score and MYCN protein expression in neuroblastoma (S3); Comparison of signature score between normal and cancerous tissues (S4); Expression of MYCN and signature score in molecular subtypes of HG-SOC (S5).
Supplementary Methods S1 from A Three-Dimensional Organoid Culture System Derived from Human Glioblastomas Recapitulates the Hypoxic Gradients and Cancer Stem Cell Heterogeneity of Tumors Found In Vivo
Authors: Hubert Christopher G. , Rivera Maricruz , Spangler Lisa C. , Wu Qiulian , Mack Stephen C. , Prager Briana C. , Couce Marta , McLendon Roger E. , Sloan Andrew E. , Rich Jeremy N.
Published: April 2023

Extended Organoid Culture Methods
Supplementary Figure Legends from A Three-Dimensional Organoid Culture System Derived from Human Glioblastomas Recapitulates the Hypoxic Gradients and Cancer Stem Cell Heterogeneity of Tumors Found In Vivo
Authors: Hubert Christopher G. , Rivera Maricruz , Spangler Lisa C. , Wu Qiulian , Mack Stephen C. , Prager Briana C. , Couce Marta , McLendon Roger E. , Sloan Andrew E. , Rich Jeremy N.
Published: April 2023

Supplementary Figure Legends for Supplemental Figures 1-5
Supplementary Figure Legend from Tyrosine Phosphatase PTPRJ/DEP-1 Is an Essential Promoter of Vascular Permeability, Angiogenesis, and Tumor Progression
Authors: Fournier Patrick , Dussault Sylvie , Fusco Alfredo , Rivard Alain , Royal Isabelle
Published: April 2023

Legend to Supp. Fig. S1
Supplementary Figure S1 from Increased Expression of miR-23a Mediates a Loss of Expression in the RAF Kinase Inhibitor Protein RKIP
Authors: Hatzl Stefan , Geiger Olivia , Kuepper Maja Kim , Caraffini Veronica , Seime Till , Furlan Tobias , Nussbaumer Erika , Wieser Rotraud , Pichler Martin , Scheideler Marcel , Nowek Katarzyna , Jongen-Lavrencic Mojca , Quehenberger Franz , Wölfler Albert , Troppmair Jakob , Sill Heinz , Zebisch Armin
Published: April 2023

Definition of RKIP loss.
Supplementary Figure Legends from Increased Expression of miR-23a Mediates a Loss of Expression in the RAF Kinase Inhibitor Protein RKIP
Authors: Hatzl Stefan , Geiger Olivia , Kuepper Maja Kim , Caraffini Veronica , Seime Till , Furlan Tobias , Nussbaumer Erika , Wieser Rotraud , Pichler Martin , Scheideler Marcel , Nowek Katarzyna , Jongen-Lavrencic Mojca , Quehenberger Franz , Wölfler Albert , Troppmair Jakob , Sill Heinz , Zebisch Armin
Published: April 2023

Supplementary Figure Legends
SUPPLEMENTAL METHODS from Cancer Therapy Directed by Comprehensive Genomic Profiling: A Single Center Study
Authors: Wheler Jennifer J. , Janku Filip , Naing Aung , Li Yali , Stephen Bettzy , Zinner Ralph , Subbiah Vivek , Fu Siqing , Karp Daniel , Falchook Gerald S. , Tsimberidou Apostolia M. , Piha-Paul Sarina , Anderson Roosevelt , Ke Danxia , Miller Vincent , Yelensky Roman , Lee J. Jack , Hong David S. , Kurzrock Razelle
Published: April 2023

SUPPLEMENTAL METHODS
Table S1 from Noninvasive In Vivo Imaging and Biologic Characterization of Thyroid Tumors by ImmunoPET Targeting of Galectin-3
Authors: D'Alessandria Calogero , Braesch-Andersen Sten , Bejo Kristel , Reder Sybille , Blechert Birgit , Schwaiger Markus , Bartolazzi Armando
Published: April 2023

Biodistribution analysis of 89Zr-labelled anti-Gal3 mAb in FRO82-1 tumor bearing mice as selected model.
Supp Table 2 from Pexmetinib: A Novel Dual Inhibitor of Tie2 and p38 MAPK with Efficacy in Preclinical Models of Myelodysplastic Syndromes and Acute Myeloid Leukemia
Authors: Bachegowda Lohith , Morrone Kerry , Winski Shannon L. , Mantzaris Ioannis , Bartenstein Matthias , Ramachandra Nandini , Giricz Orsi , Sukrithan Vineeth , Nwankwo George , Shahnaz Samira , Bhagat Tushar D. , Bhattacharyya Sanchari , Assal Amer , Shastri Aditi , Gordon-Mitchell Shanisha , Pellagatti Andrea , Boultwood Jacqueline , Schinke Carolina , Yu Yiting , Guha Chandan , Rizzi James , Garrus Jennifer , Brown Suzy , Wollenberg Lance , Hogeland Grant , Wright Dale , Munson Mark , Rodriguez Mareli , Gross Stefan , Chantry David , Zou Yiyu , Platanias Leonidas C. , Burgess Laurence E. , Pradhan Kith , Steidl Ulrich , Verma Amit
Published: April 2023

MDS Patient Characteristics
Supp Table 1 from Pexmetinib: A Novel Dual Inhibitor of Tie2 and p38 MAPK with Efficacy in Preclinical Models of Myelodysplastic Syndromes and Acute Myeloid Leukemia
Authors: Bachegowda Lohith , Morrone Kerry , Winski Shannon L. , Mantzaris Ioannis , Bartenstein Matthias , Ramachandra Nandini , Giricz Orsi , Sukrithan Vineeth , Nwankwo George , Shahnaz Samira , Bhagat Tushar D. , Bhattacharyya Sanchari , Assal Amer , Shastri Aditi , Gordon-Mitchell Shanisha , Pellagatti Andrea , Boultwood Jacqueline , Schinke Carolina , Yu Yiting , Guha Chandan , Rizzi James , Garrus Jennifer , Brown Suzy , Wollenberg Lance , Hogeland Grant , Wright Dale , Munson Mark , Rodriguez Mareli , Gross Stefan , Chantry David , Zou Yiyu , Platanias Leonidas C. , Burgess Laurence E. , Pradhan Kith , Steidl Ulrich , Verma Amit
Published: April 2023

Gene sets differentially expressed in Angpt-1 high MDS samples
Supplementary Table S2 from Multivalent Peptoid Conjugates Which Overcome Enzalutamide Resistance in Prostate Cancer Cells
Authors: Wang Yu , Dehigaspitiya Dilani C. , Levine Paul M. , Profit Adam A. , Haugbro Michael , Imberg-Kazdan Keren , Logan Susan K. , Kirshenbaum Kent , Garabedian Michael J.
Published: April 2023

Primer sequences for qRT-PCR.
Supplementary Methods, Supplementary Figure Legends, Supplementary Table, Supplementary Figures 1 through 7 from Anticancer Effects of Mesothelin-Targeted Immunotoxin Therapy Are Regulated by Tyrosine Kinase DDR1
Authors: Ali-Rahmani Fatima , FitzGerald David J. , Martin Scott , Patel Paresma , Prunotto Marco , Ormanoglu Pinar , Thomas Craig , Pastan Ira
Published: April 2023

Supplementary Methods Supplementary Reference Supplementary Figure Legends Supplementary Table Supplementary Figures Suppl Fig 1. Effect of DDR1 knockdown on internalization of alexa-647 labeled RG7787 Fig S2. Effect of DDR1 knockdown on mesothelin expression Fig S3. KB or A431/H9 cells were transfected with control siRNA or DDR1 siRNAs Fig S4. Effect of collagen I on DDR1 kinase activation in A) A431/H9 and B) KLM1 Fig S5. Nilotinib enhances cytotoxicity of RG7787 Fig S6. Combination of 7rh enhances cytotoxicity of native PE and HB21 Fig S7. 7rh inhibits DDR1 phosphorylation in A431/H9 tumors Table S1. siRNA and primer sequences used in this study
Supplementary Table S2 from An Epigenetic Reprogramming Strategy to Resensitize Radioresistant Prostate Cancer Cells
Authors: Peitzsch Claudia , Cojoc Monica , Hein Linda , Kurth Ina , Mäbert Katrin , Trautmann Franziska , Klink Barbara , Schröck Evelin , Wirth Manfred P. , Krause Mechthild , Stakhovsky Eduard A. , Telegeev Gennady D. , Novotny Vladimir , Toma Marieta , Muders Michael , Baretton Gustavo B. , Frame Fiona M. , Maitland Norman J. , Baumann Michael , Dubrovska Anna
Published: April 2023

Gene set enrichment analysis (GSEA) for DU145 radioresistant (RR) cells versus DU145 parental (P) cells, NOM p value < 0.05.
Supplementary figures 2-4 from CRISPR/Cas9-Mediated Trp53 and Brca2 Knockout to Generate Improved Murine Models of Ovarian High-Grade Serous Carcinoma
Authors: Walton Josephine , Blagih Julianna , Ennis Darren , Leung Elaine , Dowson Suzanne , Farquharson Malcolm , Tookman Laura A. , Orange Clare , Athineos Dimitris , Mason Susan , Stevenson David , Blyth Karen , Strathdee Douglas , Balkwill Frances R. , Vousden Karen , Lockley Michelle , McNeish Iain A.
Published: April 2023

Figures S2-S4: Transcription of Cdkn1a in CRISPR control clones; Sanger sequencing of Brca2 exon 3; RAD51 focus formation following irradiation
Supplementary Table S2 from Deep Sequencing Reveals a Novel miR-22 Regulatory Network with Therapeutic Potential in Rhabdomyosarcoma
Authors: Bersani Francesca , Lingua Marcello Francesco , Morena Deborah , Foglizzo Valentina , Miretti Silvia , Lanzetti Letizia , Carrà Giovanna , Morotti Alessandro , Ala Ugo , Provero Paolo , Chiarle Roberto , Singer Samuel , Ladanyi Marc , Tuschl Thomas , Ponzetto Carola , Taulli Riccardo
Published: April 2023

Top 5 muscle-enriched miRNAs.
Figure S6 from UGT2B17 Expedites Progression of Castration-Resistant Prostate Cancers by Promoting Ligand-Independent AR Signaling
Authors: Li Haolong , Xie Ning , Chen Ruiqi , Verreault Mélanie , Fazli Ladan , Gleave Martin E. , Barbier Olivier , Dong Xuesen
Published: April 2023

Figure S6: UGT2B17 enhances VCaP cell growth and invasion after prolonged androgen deprivation
Supplementary Table 5 from Integrative Genomic Analysis Identifies the Core Transcriptional Hallmarks of Human Hepatocellular Carcinoma
Authors: Allain Coralie , Angenard Gaëlle , Clément Bruno , Coulouarn Cédric
Published: April 2023

Exhaustive data mining of up- and down-regulated genes of the core human HCC signature using Enrichr algorithm.
Supplementary Table S1 from Histone H3K27 Trimethylation Modulates 5-Fluorouracil Resistance by Inhibiting PU.1 Binding to the DPYD Promoter
Authors: Wu Rentian , Nie Qian , Tapper Erin E. , Jerde Calvin R. , Dunlap Garrett S. , Shrestha Shikshya , Elraiyah Tarig A. , Offer Steven M. , Diasio Robert B.
Published: April 2023

Real-time PCR primers list.
Supplementary Figure S3 from ERK and p38 MAPK Activities Determine Sensitivity to PI3K/mTOR Inhibition via Regulation of MYC and YAP
Authors: Muranen Taru , Selfors Laura M. , Hwang Julie , Gallegos Lisa L. , Coloff Jonathan L. , Thoreen Carson C. , Kang Seong A. , Sabatini David M. , Mills Gordon B. , Brugge Joan S.
Published: April 2023

PI3K/mTOR inhibition leads to p38 activation and DNA damage response, which is suppressed in drug resistant cell lines.
Supplementary Figure Legends from Ablation of miR-10b Suppresses Oncogene-Induced Mammary Tumorigenesis and Metastasis and Reactivates Tumor-Suppressive Pathways
Authors: Kim Jongchan , Siverly Ashley N. , Chen Dahu , Wang Min , Yuan Yuan , Wang Yumeng , Lee Hyemin , Zhang Jinsong , Muller William J. , Liang Han , Gan Boyi , Yang Xianbin , Sun Yutong , You M. James , Ma Li
Published: April 2023

Legends for Supplementary Figures S1-S11
Supplementary Figure 1 from Protective Role for TWEAK/Fn14 in Regulating Acute Intestinal Inflammation and Colitis-Associated Tumorigenesis
Authors: Di Martino Luca , Dave Maneesh , Menghini Paola , Xin Wei , Arseneau Kristen O. , Pizarro Theresa T. , Cominelli Fabio
Published: April 2023

This supplementary figure describes the effects of DSS administration in TWEAK deficient mice compared to wild type littermates.
Supplementary Figures from Melanoma Lesions Independently Acquire T-cell Resistance during Metastatic Latency
Authors: Zhao Fang , Sucker Antje , Horn Susanne , Heeke Christina , Bielefeld Nicola , Schrörs Barbara , Bicker Anne , Lindemann Monika , Roesch Alexander , Gaudernack Gustav , Stiller Mathias , Becker Jürgen C. , Lennerz Volker , Wölfel Thomas , Schadendorf Dirk , Griewank Klaus , Paschen Annette
Published: April 2023

Supplementary Figures S1-S6. Supplementary Fig. S1, localization of T cells in the periphery of metastasis Ma-Mel-86f. Supplementary Fig. S2, re-expression of HLA class I on B2M-transfected melanoma cells. Supplementary Fig. S3, no enrichment of CD4+ T cells and NK cells in metastasis Ma-Mel-86f. Supplementary Fig. S4, similar PD-L1 expression on Ma-Mel-86a and Ma-Mel-86c cells. Supplementary Fig. S5, autologous CD8+ T cells kill Ma-Mel-86c cells. Supplementary Fig. S6, autologous CD8+ T cells kill Ma-Mel-86a cells.
Supplementary Figure Legends from Cell-Cycle Regulation Accounts for Variability in Ki-67 Expression Levels
Authors: Sobecki Michal , Mrouj Karim , Colinge Jacques , Gerbe François , Jay Philippe , Krasinska Liliana , Dulic Vjekoslav , Fisher Daniel
Published: April 2023

Detailed legends for Supplementary Figures S1-S6.
Supplementary Methods from Decreased Mitochondrial Mutagenesis during Transformation of Human Breast Stem Cells into Tumorigenic Cells
Authors: Ahn Eun Hyun , Lee Seung Hyuk , Kim Joon Yup , Chang Chia-Cheng , Loeb Lawrence A.
Published: April 2023

Supplementary methods
Suppmentary Materials and Methods and Supplementary Figures 1 through 6 from Destabilization of Fatty Acid Synthase by Acetylation Inhibits De Novo Lipogenesis and Tumor Cell Growth
Authors: Lin Huai-Peng , Cheng Zhou-Li , He Ruo-Yu , Song Lei , Tian Meng-Xin , Zhou Li-Sha , Groh Beezly S. , Liu Wei-Ren , Ji Min-Biao , Ding Chen , Shi Ying-Hong , Guan Kun-Liang , Ye Dan , Xiong Yue
Published: April 2023

Supplementary experimental procedures; Figure S1. Acetylation promotes polyubiquitylation and protein degradation of FASN; Figure S2. KAT3A, KAT3B and HAT1 do not interact with FASN; Figure S3. HDAC3 regulates acetylation and protein stability of FASN; Figure S4. TRIM21 interacts and promotes polyubiquitylation of FASN; Figure S5. Raman spectra of lipid and protein signals in the cell; Figure S6. Clinical cases with decreased FASN acetylation, increased FASN and HDAC3 poteins, as well as a moderate increase in TRIM21 protein in human hepatocellular cancer tissues.
Supplementary Figure 3 from AIMP2 Controls Intestinal Stem Cell Compartments and Tumorigenesis by Modulating Wnt/β-Catenin Signaling
Authors: Yum Min Kyu , Kang Jong-Seol , Lee Al-Eum , Jo Young-Woo , Seo Ji-Yun , Kim Hyun-A , Kim Yoon-Young , Seong Jinwoo , Lee Eun Byul , Kim Ji-Hoon , Han Jung Min , Kim Sunghoon , Kong Young-Yun
Published: April 2023

AIMP2 interacts with the DIX domain of DVL and modulate Wnt/β-catenin signaling in an Aimp2 gene dosage dependent manner
A microarray analysis of E13.5 WT spheres and E13.5 TH-MYCN spheres from PRC2-Mediated Transcriptomic Alterations at the Embryonic Stage Govern Tumorigenesis and Clinical Outcome in MYCN-Driven Neuroblastoma
Authors: Tsubota Shoma , Kishida Satoshi , Shimamura Teppei , Ohira Miki , Yamashita Satoshi , Cao Dongliang , Kiyonari Shinichi , Ushijima Toshikazu , Kadomatsu Kenji
Published: April 2023

A microarray analysis of E13.5 WT spheres and E13.5 TH-MYCN spheres. The table contains data processing, probe information, and the list of up- and downregulated genes, and the results of gene ontology analysis for the up- and downregulated genes.
Figures S1, S2, S3, S4, S5 from Mismatch Repair Proteins Initiate Epigenetic Alterations during Inflammation-Driven Tumorigenesis
Authors: Maiuri Ashley R. , Peng Michael , Podicheti Ram , Sriramkumar Shruthi , Kamplain Caitlin M. , Rusch Douglas B. , DeStefano Shields Christina E. , Sears Cynthia L. , O'Hagan Heather M.
Published: April 2023

Figure S1 provides additional analysis of DMRs, including genic location, bivalent status, methylation validation, and IPA analysis. Figure S2 provides evidence supporting the finding that oxidative damage-induced gene expression changes occur in epithelial cells. Figure S3 demonstrates that the inflammatory response to ETBF is similar in WT and Msh2 deficient mice. Figure S4 demonstrates that Msh2 deficient Min mice have higher CFU/g of ETBF in their stool than WT Min mice. Figure S5 provides DNA methylation validation for MBD-seq data presented in Figure 5.
Supplementary Tables 1 and 2 from ZIC5 Drives Melanoma Aggressiveness by PDGFD-Mediated Activation of FAK and STAT3
Authors: Satow Reiko , Nakamura Tomomi , Kato Chiaki , Endo Miku , Tamura Mana , Batori Ryosuke , Tomura Shiori , Murayama Yumi , Fukami Kiyoko
Published: April 2023

Table S1. List of siRNA Screening Library Sequences. Table S2. Identification of PDGFD as a ZIC5 Downstream Factor
Supplementary Table 3 from Genomic Alterations in Circulating Tumor DNA from Diverse Cancer Patients Identified by Next-Generation Sequencing
Authors: Schwaederle Maria , Chattopadhyay Ranajoy , Kato Shumei , Fanta Paul T. , Banks Kimberly C. , Choi In Sil , Piccioni David E. , Ikeda Sadakatsu , Talasaz AmirAli , Lanman Richard B. , Bazhenova Lyudmila , Kurzrock Razelle
Published: April 2023

70 gene panel (ctDNA) (N = 120 patients)
Figure S6 from Androgen Receptor Variants Mediate DNA Repair after Prostate Cancer Irradiation
Authors: Yin Yi , Li Rui , Xu Kangling , Ding Sentai , Li Jeffrey , Baek GuemHee , Ramanand Susmita G. , Ding Sam , Liu Zhao , Gao Yunpeng , Kanchwala Mohammed S. , Li Xiangyi , Hutchinson Ryan , Liu Xihui , Woldu Solomon L. , Xing Chao , Desai Neil B. , Feng Felix Y. , Burma Sandeep , de Bono Johann S. , Dehm Scott M. , Mani Ram S. , Chen Benjamin P.C. , Raj Ganesh V.
Published: April 2023

Differential IR-induced interactions between ARfl and ARVs with DNA-PKc.
Supplementary Figure 4 from ARHGAP18 Downregulation by miR-200b Suppresses Metastasis of Triple-Negative Breast Cancer by Enhancing Activation of RhoA
Authors: Humphries Brock , Wang Zhishan , Li Yunfei , Jhan Jing-Ru , Jiang Yiguo , Yang Chengfeng
Published: April 2023

ARHGAP18 expression levels are significantly higher in TNBC tumors than other subtypes of breast cancer and higher ARHGAP18 levels in breast tumors are associated with poorer metastasis free survival.
Supplementary Figure 3 from ARHGAP18 Downregulation by miR-200b Suppresses Metastasis of Triple-Negative Breast Cancer by Enhancing Activation of RhoA
Authors: Humphries Brock , Wang Zhishan , Li Yunfei , Jhan Jing-Ru , Jiang Yiguo , Yang Chengfeng
Published: April 2023

SiRNA knocking down ARHGAP18 expression alters the actin cytoskeleton reorganization pattern and RhoA and Rac1activation
Figure S2 from Androgen Receptor Variants Mediate DNA Repair after Prostate Cancer Irradiation
Authors: Yin Yi , Li Rui , Xu Kangling , Ding Sentai , Li Jeffrey , Baek GuemHee , Ramanand Susmita G. , Ding Sam , Liu Zhao , Gao Yunpeng , Kanchwala Mohammed S. , Li Xiangyi , Hutchinson Ryan , Liu Xihui , Woldu Solomon L. , Xing Chao , Desai Neil B. , Feng Felix Y. , Burma Sandeep , de Bono Johann S. , Dehm Scott M. , Mani Ram S. , Chen Benjamin P.C. , Raj Ganesh V.
Published: April 2023

ARV mediates DDR and clonogenic survival.
Supplementary Figure 2 from ARHGAP18 Downregulation by miR-200b Suppresses Metastasis of Triple-Negative Breast Cancer by Enhancing Activation of RhoA
Authors: Humphries Brock , Wang Zhishan , Li Yunfei , Jhan Jing-Ru , Jiang Yiguo , Yang Chengfeng
Published: April 2023

Inhibition of Rac1 by treating cells with a PKCalpha inhibitor does not affect RhoA activation
Figure S1 from Androgen Receptor Variants Mediate DNA Repair after Prostate Cancer Irradiation
Authors: Yin Yi , Li Rui , Xu Kangling , Ding Sentai , Li Jeffrey , Baek GuemHee , Ramanand Susmita G. , Ding Sam , Liu Zhao , Gao Yunpeng , Kanchwala Mohammed S. , Li Xiangyi , Hutchinson Ryan , Liu Xihui , Woldu Solomon L. , Xing Chao , Desai Neil B. , Feng Felix Y. , Burma Sandeep , de Bono Johann S. , Dehm Scott M. , Mani Ram S. , Chen Benjamin P.C. , Raj Ganesh V.
Published: April 2023

ADT increases the ARV expression in ex vivo cultures of primary PCa tissues
Figure S1 from TP53INP1 Downregulation Activates a p73-Dependent DUSP10/ERK Signaling Pathway to Promote Metastasis of Hepatocellular Carcinoma
Authors: Ng Kai-Yu , Chan Lok-Hei , Chai Stella , Tong Man , Guan Xin-Yuan , Lee Nikki P , Yuan Yunfei , Xie Dan , Lee Terence K , Dusetti Nelson J , Carrier Alice , Ma Stephanie
Published: April 2023

Mitomycin C studies show TP53INP1-mediated migration and invasion is not a result of the cells' altered ability to proliferate.
Supplementary Tables S1-S7 from Genomic Profiling of a Large Set of Diverse Pediatric Cancers Identifies Known and Novel Mutations across Tumor Spectra
Authors: Chmielecki Juliann , Bailey Mark , He Jie , Elvin Julia , Vergilio Jo-Anne , Ramkissoon Shakti , Suh James , Frampton Garrett M. , Sun James X. , Morley Samantha , Spritz Daniel , Ali Siraj , Gay Laurie , Erlich Rachel L. , Ross Jeffrey S. , Buxhaku Joana , Davies Hilary , Faso Vinny , Germain Alexis , Glanville Blair , Miller Vincent A. , Stephens Philip J. , Janeway Katherine A. , Maris John M. , Meshinchi Soheil , Pugh Trevor J. , Shern Jack F. , Lipson Doron
Published: April 2023

Gene lists for Version 1 of the FoundationOne Assay (S1); Gene lists for Version 2 of the FoundationOne Assay (S2); Gene lists for Version 3 of the FoundationOne Assay (S3); Gene lists for Version 4 of the FoundationOne Assay (S4); Gene lists for Version 5 of the FoundationOne Assay (S5); Distribution of samples across different FoundationOne assays (S6); Filtered variants of unknown significance (S7).
Supplementary Figure S3 from Autocrine BMP-4 Signaling Is a Therapeutic Target in Colorectal Cancer
Authors: Yokoyama Yuichiro , Watanabe Toshiaki , Tamura Yusuke , Hashizume Yoshinobu , Miyazono Kohei , Ehata Shogo
Published: April 2023

Regulation of DUSP5 and Erk by BMP signaling (related to Figure 5).
Supplementary Figures S1-S9 from [18F]fluorothymidine PET Informs the Synergistic Efficacy of Capecitabine and Trifluridine/Tipiracil in Colon Cancer
Authors: Kim Seog-Young , Jung Jin Hwa , Lee Haeng Jung , Soh Hyunsu , Lee Sang Ju , Oh Seung Jun , Chae Sun Young , Lee Jai Hyuen , Lee Seung Jin , Hong Yong Sang , Kim Tae Won , Moon Dae Hyuk
Published: April 2023

Figure S1 shows IC50 of 5-fluorouracil in cell lines. Figure S2 shows mRNA expression of ENT1, TK1, TS, TP, and DPD in human colon cancer cell lines. Table S3 shows relationship between 5-fluorouracil sensitivity (IC50) and mRNA expression of 5-fluorouracil transporter or metabolic enzymes. Figure S4 shows correlation of capecitabine sensitivity in human colon cancer xenografts (%TGI) with 5-fluorouracil sensitivity (IC50) in vitro. Figure S5 shows correlation of capecitabine sensitivity in human colon cancer xenografts (%TGI) with the maximal SUV (SUVmax) of [18F]FLT PET. Figure S6 shows capecitabine induced changes in TK1 activity of ex vivo tumor tissues on day 4 in HCT8, HT29, and HCT116 human colon cancer xenografts. Figure S7 and S8 show immunohistochemical evaluation of ENT1 and TP expression in ex vivo xenografts and correlation with %TGI by capecitabine. Figure S9 shows correlation of capecitabine sensitivity in human colon cancer xenografts (%TGI) with ex vivo mRNA expression of 5-fluorouracil transporter and metabolic enzymes.
Supplemental Table 5 from Phosphoproteomic Profiling Reveals ALK and MET as Novel Actionable Targets across Synovial Sarcoma Subtypes
Authors: Fleuren Emmy D.G. , Vlenterie Myrella , van der Graaf Winette T.A. , Hillebrandt-Roeffen Melissa H.S. , Blackburn James , Ma Xiuquan , Chan Howard , Magias Mandy C. , van Erp Anke , van Houdt Laurens , Cebeci Sabri A.S. , van de Ven Amy , Flucke Uta E. , Heyer Erin E. , Thomas David M. , Lord Christopher J. , Marini Kieren D. , Vaghjiani Vijesh , Mercer Tim R. , Cain Jason E. , Wu Jianmin , Versleijen-Jonkers Yvonne M.H. , Daly Roger J.
Published: April 2023

Protein-protein network analysis
Supplementary Figures S1-S7 from Crystal Structure of the Emerging Cancer Target MTHFD2 in Complex with a Substrate-Based Inhibitor
Authors: Gustafsson Robert , Jemth Ann-Sofie , Gustafsson Nina M.S. , Färnegårdh Katarina , Loseva Olga , Wiita Elisée , Bonagas Nadilly , Dahllund Leif , Llona-Minguez Sabin , Häggblad Maria , Henriksson Martin , Andersson Yasmin , Homan Evert , Helleday Thomas , Stenmark Pål
Published: April 2023

Purified MTHFD2 (S1); Luminescence signals for MTHFD2 vs background (S2); Target engagement for LY345899 in intact cells and resazurin viability assay using several cell lines (S3); Size exclusion chromatography of MTHFD2 (S4); Schematic representation of the binding sites of NAD+, inorganic phosphate and LY345899 (S5); Synthesis of LY345899 (S6); Sequence alignment of MTHFD1, MTHFD2, and MTHFD2L was performed using Clustal Omega v 1.2.1 (S7).
Supplementary Figures and Legends from A Naturally Generated Decoy of the Prostate Apoptosis Response-4 Protein Overcomes Therapy Resistance in Tumors
Authors: Hebbar Nikhil , Burikhanov Ravshan , Shukla Nidhi , Qiu Shirley , Zhao Yanming , Elenitoba-Johnson Kojo S.J. , Rangnekar Vivek M.
Published: April 2023

SUPPLEMENTARY DATA (1) Figure S1 shows that Paclitaxel induces paracrine apoptosis in Paclitaxel-resistant cells by inducing the secretion of a Par-4-like secreted factor. (2) Figure S2 shows that Par-4 is cleaved to produce the 15 kDa fragment. (3) Figure S3 shows that the 15 kDa fragment is produced by cleavage of Par-4 at D131. (4) Figure S4 shows that Par-4 cleavage occurs at the D131 residue in a caspase-dependent manner. (5) Figure S5 shows that PAF induces apoptosis specifically in cancer cells and not in normal cells. (6) Figure S6 shows that PAF induced apoptosis is dependent on caspase 8 and caspase 3. (7) Figure S7 shows the structure-function analysis for the minimum domain of PAF essential for apoptosis induction. (8) Figure S8 shows that extracellular PAF selectively enters cancer cells, not normal cells. (9) Figure S9 shows the reproducibility of cell death/apoptosis assays.
Table S1, Table S2, Table S3, Table S4, Table S5 from Identification of New Tumor Suppressor Genes in Triple-Negative Breast Cancer
Authors: Rangel Roberto , Guzman-Rojas Liliana , Kodama Takahiro , Kodama Michiko , Newberg Justin Y. , Copeland Neal G. , Jenkins Nancy A.
Published: April 2023

Table S1. siRNA oligos of the candidate cancer genes. Table S2. List of lentivirus shRNA clones. Table S3. Primer sets used in the ChIP assay. Table S4. List of TaqMan probes. Table S5. Candidate cancer genes were screen in four TNBC cell lines using siRNA oligos.
Supplementary Figures from Vitamin D3 Prevents Calcium-Induced Progression of Early-Stage Prostate Tumors by Counteracting TRPC6 and Calcium Sensing Receptor Upregulation
Authors: Bernichtein Sophie , Pigat Natascha , Barry Delongchamps Nicolas , Boutillon Florence , Verkarre Virginie , Camparo Philippe , Reyes-Gomez Edouard , Méjean Arnaud , Oudard Stéphane M. , Lepicard Eve M. , Viltard Mélanie , Souberbielle Jean-Claude , Friedlander Gérard , Capiod Thierry , Goffin Vincent
Published: April 2023

This file contains supplementary figures showing prostate tumor kinetics (Fig S1) and histology (Fig S2) for the two mouse models, the validation of regimens (Fig S3 and S4), the effects of diets (Fig S5) and aging (Fig S6) on cancer hallmarks, and the results of cell studies complementary to main Figures 3 and 4.
Supplementary Tables from Integrative Comparison of mRNA Expression Patterns in Breast Cancers from Caucasian and Asian Americans with Implications for Precision Medicine
Authors: Shi Yanxia , Steppi Albert , Cao Ye , Wang Jianan , He Max M. , Li Liren , Zhang Jinfeng
Published: April 2023

Tables showing differentially expressed genes that we found. Table S1 shows some differentially expressed genes found in the overall comparison between Asian American and Caucasian American cancer tissue. Table S2 lists differentially expressed genes for comparisons blocked according to stage and subtype. Each of tables S1 and S2 contain brief descriptions explaining possible relevance of the listed genes to breast cancer along with references. Tables S3 through S8 list all of the differentially expressed genes found between the two ethnic groups, defined as those genes with absolute value of log fold change greater than 1 and adjusted p-value less than 0.05.
Supplementary Figure 2 from Integrative Comparison of mRNA Expression Patterns in Breast Cancers from Caucasian and Asian Americans with Implications for Precision Medicine
Authors: Shi Yanxia , Steppi Albert , Cao Ye , Wang Jianan , He Max M. , Li Liren , Zhang Jinfeng
Published: April 2023

Figure S2: Figure showing the overwhelming down-regulation of cancer pathways in Asian American breast cancer compared to Caucasian American breast cancer.
Supplementary Figure Legends from A Metastatic Mouse Model Identifies Genes That Regulate Neuroblastoma Metastasis
Authors: Seong Bo Kyung A. , Fathers Kelly E. , Hallett Robin , Yung Christina K. , Stein Lincoln D. , Mouaaz Samar , Kee Lynn , Hawkins Cynthia E. , Irwin Meredith S. , Kaplan David R.
Published: April 2023

Legends for Supplementary figures are provided
Supplementary Materials and Methods and Supplementary Figure Legends from Long Noncoding RNA MALAT1 Promotes Hepatocellular Carcinoma Development by SRSF1 Upregulation and mTOR Activation
Authors: Malakar Pushkar , Shilo Asaf , Mogilevsky Adi , Stein Ilan , Pikarsky Eli , Nevo Yuval , Benyamini Hadar , Elgavish Sharona , Zong Xinying , Prasanth Kannanganattu V. , Karni Rotem
Published: April 2023

Supplementary information text: Methods and figure legends
Supplementary methods and results from Genetic and Environmental Determinants of Immune Response to Cutaneous Melanoma
Authors: Poźniak Joanna , Nsengimana Jérémie , Laye Jonathan P. , O’Shea Sally J. , Diaz Joey Mark S. , Droop Alastair P. , Filia Anastasia , Harland Mark , Davies John R. , Mell Tracey , Randerson-Moor Juliette A. , Muralidhar Sathya , Hogan Sabrina A. , Freiberger Sandra Nicole , Levesque Mitchell P. , Cook Graham P. , Bishop D. Timothy , Newton-Bishop Julia
Published: April 2023

Additional information on methods used and supplementary figures and tables. Figure S1: Schematic summary of consensus clustering; Figure S2: Comparison of the newly obtained immune subgroups with two published melanoma molecular signatures; Figure S3: Whole transcriptome differences among the three immune subgroups; Figure S4: Association of GPR15 gene expression, smoking and the three immune subgroups; Table S1: Survival analysis for the immune cell scores in our data (LMC) and TCGA datasets; Table S2: Association between clinico-pathological characteristics and the three immune subgroups in the LMC; Table S3: Differences in the immune cell scores between ever and never smokers in the High Immune Subgroup; Table S4: Association between smoking and tumor histological features in the High Immune Subgroup.
Supplementary Data 2 from Genetic and Environmental Determinants of Immune Response to Cutaneous Melanoma
Authors: Poźniak Joanna , Nsengimana Jérémie , Laye Jonathan P. , O’Shea Sally J. , Diaz Joey Mark S. , Droop Alastair P. , Filia Anastasia , Harland Mark , Davies John R. , Mell Tracey , Randerson-Moor Juliette A. , Muralidhar Sathya , Hogan Sabrina A. , Freiberger Sandra Nicole , Levesque Mitchell P. , Cook Graham P. , Bishop D. Timothy , Newton-Bishop Julia
Published: April 2023

List of 70 genes shared between the signature used to generate the three immune subgroups in this study and the TCGA signature as well as tables of additional results from the analysis of the 3 immune subgroups: Genes and pathways upregulated in the High and Low Immune Subgroups; List of genes significantly correlating with MYC in melanoma cell lines; Results of copy number data analysis for MYC, NF-kappa B and IFN-gamma pathways; Results of the survival analyses of environmental and clinico-pathological factors with alternative definitions of smoking variable.
Figure S3 from LPA Induces Metabolic Reprogramming in Ovarian Cancer via a Pseudohypoxic Response
Authors: Ha Ji Hee , Radhakrishnan Rangasudhagar , Jayaraman Muralidharan , Yan Mingda , Ward Jeremy D. , Fung Kar-Ming , Moxley Katherine , Sood Anil K. , Isidoro Ciro , Mukherjee Priyabrata , Song Yong Sang , Dhanasekaran Danny N.
Published: April 2023

Regulation of aerobic glycolysis by LPA involving the Rac1-NOX-ROS network
Figure S1 from LPA Induces Metabolic Reprogramming in Ovarian Cancer via a Pseudohypoxic Response
Authors: Ha Ji Hee , Radhakrishnan Rangasudhagar , Jayaraman Muralidharan , Yan Mingda , Ward Jeremy D. , Fung Kar-Ming , Moxley Katherine , Sood Anil K. , Isidoro Ciro , Mukherjee Priyabrata , Song Yong Sang , Dhanasekaran Danny N.
Published: April 2023

LPA-induced glycolysis is mediated through its cognate receptors
Supplementary Tables from Breast Cancer Risk and Insulin Resistance: Post Genome-Wide Gene–Environment Interaction Study Using a Random Survival Forest
Authors: Jung Su Yon , Papp Jeanette C. , Sobel Eric M. , Yu Herbert , Zhang Zuo-Feng
Published: April 2023

Supplementary Tables S1 to S10: S1.Allele frequencies of insulin resistance-relevant SNPs. S2.Predictive values of variable in active group from the second stage of RSF. S3. Predictive values of variable in inactive group from the second stage of RSF. S4. Predictive values of variable in lower SFA-intake group from the second stage of RSF. S5. Predictive values of variable in higher SFA-intake group from the second stage of RSF. S6. Multivariate regression. S7. Overall analysis: single SNPs. S8. Physical activity-stratified analysis: single SNPs. S9 SFA-stratified analysis: single SNPs. S10. Overall analysis: combined effect of SNPs and behaviors.
Supplementary Figures from Breast Cancer Risk and Insulin Resistance: Post Genome-Wide Gene–Environment Interaction Study Using a Random Survival Forest
Authors: Jung Su Yon , Papp Jeanette C. , Sobel Eric M. , Yu Herbert , Zhang Zuo-Feng
Published: April 2023

Supplementary Figures S1 to S12. S1. Pathways of IR SNPs, phenotypes, breast cancer modified by lifestyles. S2.Flow diagram of analytic cohort. S3. The first stage of random survival forest analysis. S4. Physical activity-stratified analysis (active Group): the second stage of RSF. VIMP. S5. Physical activity-stratified analysis (active Group): the second stage of RSF. OOB. S6. Physical activity-stratified analysis (inactive Group): the second stage of RSF. VIMP. S7. Physical activity-stratified analysis (inactive Group): the second stage of RSF. OOB. S8. Saturated fatty acids (SFA)-stratified analysis (low fat diet group): the second stage of RSF.VIMP. S9. Saturated fatty acids (SFA)-stratified analysis (low fat diet group): the second stage of RSF.OOB. S10. Saturated fatty acids (SFA)-stratified analysis (high fat diet group): the second stage of RSF.VIMP. S11. Saturated fatty acids (SFA)-stratified analysis (high fat diet group): the second stage of RSF.OOB. S12. Contour plot by SFA consumption.
Supplementary Table 5 from Oncogenic Properties of NEAT1 in Prostate Cancer Cells Depend on the CDC5L–AGRN Transcriptional Regulation Circuit
Authors: Li Xin , Wang Xianteng , Song Wanlu , Xu Hui , Huang Rongyao , Wang Yuting , Zhao Wenwei , Xiao Zhengtao , Yang Xuerui
Published: April 2023

Binding targets of CDC5L as identified by MACS.
Supplementary Table 4 from Oncogenic Properties of NEAT1 in Prostate Cancer Cells Depend on the CDC5L–AGRN Transcriptional Regulation Circuit
Authors: Li Xin , Wang Xianteng , Song Wanlu , Xu Hui , Huang Rongyao , Wang Yuting , Zhao Wenwei , Xiao Zhengtao , Yang Xuerui
Published: April 2023

DNA binding regions identified by CDC5L ChIP-seq.
Supplementary Table 2 from Oncogenic Properties of NEAT1 in Prostate Cancer Cells Depend on the CDC5L–AGRN Transcriptional Regulation Circuit
Authors: Li Xin , Wang Xianteng , Song Wanlu , Xu Hui , Huang Rongyao , Wang Yuting , Zhao Wenwei , Xiao Zhengtao , Yang Xuerui
Published: April 2023

Results of functional enrichment analysis with differentially expressed genes upon silencing of NEAT1.
Figure S8 from FOXO Transcription Factors Both Suppress and Support Breast Cancer Progression
Authors: Hornsveld Marten , Smits Lydia M.M. , Meerlo Maaike , van Amersfoort Miranda , Groot Koerkamp Marian J.A. , van Leenen Dik , Kloet David E.A. , Holstege Frank C.P. , Derksen Patrick W.B. , Burgering Boudewijn M.T. , Dansen Tobias B.
Published: April 2023

FOXOs mediated gene expression influences a plethora of cellular processes.
Supplement Table 2 from Diabetes Treatments and Risks of Adverse Breast Cancer Outcomes among Early-Stage Breast Cancer Patients: A SEER-Medicare Analysis
Authors: Chen Lu , Chubak Jessica , Boudreau Denise M. , Barlow William E. , Weiss Noel S. , Li Christopher I.
Published: April 2023

Patterns of diabetes medication use among women with diabetes during study follow up
Figure S4-S5 from FOXO Transcription Factors Both Suppress and Support Breast Cancer Progression
Authors: Hornsveld Marten , Smits Lydia M.M. , Meerlo Maaike , van Amersfoort Miranda , Groot Koerkamp Marian J.A. , van Leenen Dik , Kloet David E.A. , Holstege Frank C.P. , Derksen Patrick W.B. , Burgering Boudewijn M.T. , Dansen Tobias B.
Published: April 2023

3D Spheroid formation of human breast cancer cells / Expression of catalase and Sod2 in mILC1
Supplementary Table S1 from Novel SEC61G–EGFR Fusion Gene in Pediatric Ependymomas Discovered by Clonal Expansion of Stem Cells in Absence of Exogenous Mitogens
Authors: Servidei Tiziana , Meco Daniela , Muto Valentina , Bruselles Alessandro , Ciolfi Andrea , Trivieri Nadia , Lucchini Matteo , Morosetti Roberta , Mirabella Massimiliano , Martini Maurizio , Caldarelli Massimo , Lasorella Anna , Tartaglia Marco , Riccardi Riccardo
Published: April 2023

Fusion transcripts identified by ChimeraScan in EPP-MI line
Supplementary Table S1, S2, S3 from Integrative Genome-Wide Analysis of Long Noncoding RNAs in Diverse Immune Cell Types of Melanoma Patients
Authors: Wang Lei , Felts Sara J. , Van Keulen Virginia P. , Scheid Adam D. , Block Matthew S. , Markovic Svetomir N. , Pease Larry R. , Zhang Yuji
Published: April 2023

Table S1: The information of RNA-seq samples and lncRNAs. Table S2: The bed file of expressed lncRNAs. Table S3: The bed file of putative novel lncRNAs.
Supplementary Figure S1, S2, S3, S4, S5, S6 from Integrative Genome-Wide Analysis of Long Noncoding RNAs in Diverse Immune Cell Types of Melanoma Patients
Authors: Wang Lei , Felts Sara J. , Van Keulen Virginia P. , Scheid Adam D. , Block Matthew S. , Markovic Svetomir N. , Pease Larry R. , Zhang Yuji
Published: April 2023

Figure S1: The cell-/tissue-specificity of lncRNA expression. Figure S2: The co-expression modules analyses in CD4+, CD8+, and CD14+ PBCs. Figure S3: The lncRNAs associated with PD-1 checkpoint pathways. Figure S4: The histogram of the number of lncRNAs marked with same number of random chosen H3K4me3 and H3K36me3 marks by the permutation test. Figure S5: The hierarchical cluster analysis and the principal component analysis of mRNAs. Figure S6: The hierarchical cluster analysis, the principal component analysis, and the correlation analysis of lncRNAs.
Suppl Figure 8 from BET Inhibition Overcomes Receptor Tyrosine Kinase–Mediated Cetuximab Resistance in HNSCC
Authors: Leonard Brandon , Brand Toni M. , O'Keefe Rachel A. , Lee Eliot D. , Zeng Yan , Kemmer Jacquelyn D. , Li Hua , Grandis Jennifer R. , Bhola Neil E.
Published: April 2023

Evaluation of RTK and BRD4 expression from clinical HNSCC datasets
Video 1. SlicerDMRI Quick Tutorial from SlicerDMRI: Open Source Diffusion MRI Software for Brain Cancer Research
Authors: Norton Isaiah , Essayed Walid Ibn , Zhang Fan , Pujol Sonia , Yarmarkovich Alex , Golby Alexandra J. , Kindlmann Gordon , Wassermann Demian , Estepar Raul San Jose , Rathi Yogesh , Pieper Steve , Kikinis Ron , Johnson Hans J. , Westin Carl-Fredrik , O'Donnell Lauren J.
Published: April 2023

Video 1. This video demonstrates the installation, one-click download of sample data, and basic usage of SlicerDMRI.
Supplemental Figures 8 and 9 from Specific Targeting of MTAP-Deleted Tumors with a Combination of 2′-Fluoroadenine and 5′-Methylthioadenosine
Authors: Tang Baiqing , Lee Hyung-Ok , An Serim S. , Cai Kathy Q. , Kruger Warren D.
Published: April 2023

Survival of mice treated with 2FA and 2FA+MTA.
Supplementary Figure S4 from TNFRSF19 Inhibits TGFβ Signaling through Interaction with TGFβ Receptor Type I to Promote Tumorigenesis
Authors: Deng Chengcheng , Lin Yu-Xin , Qi Xue-Kang , He Gui-Ping , Zhang Yuchen , Zhang Hao-Jiong , Xu Miao , Feng Qi-Sheng , Bei Jin-Xin , Zeng Yi-Xin , Feng Lin
Published: April 2023

Supplementary Figure S4 from TNFRSF19 Inhibits TGFβ Signaling through Interaction with TGFβ Receptor Type I to Promote Tumorigenesis
Supplementary Data from TNFRSF19 Inhibits TGFβ Signaling through Interaction with TGFβ Receptor Type I to Promote Tumorigenesis
Authors: Deng Chengcheng , Lin Yu-Xin , Qi Xue-Kang , He Gui-Ping , Zhang Yuchen , Zhang Hao-Jiong , Xu Miao , Feng Qi-Sheng , Bei Jin-Xin , Zeng Yi-Xin , Feng Lin
Published: April 2023

Supplementary Data from TNFRSF19 Inhibits TGFβ Signaling through Interaction with TGFβ Receptor Type I to Promote Tumorigenesis