bluuebunny/crossref_metadata_2025 huggingface dataset:
Nitrogen export from a boreal stream network following forest harvesting: seasonal nitrate removal and conservative export of organic forms
Authors: Schelker J. , Sponseller R. , Ring E. , Högbom L. , Löfgren S. , Laudon H.
Published: January 2016

Abstract. Clear-cutting is today the primary driver of large-scale forest disturbance in boreal regions of Fennoscandia. Among the major environmental concerns of this practice for surface waters is the increased mobilization of nutrients, such as dissolved inorganic nitrogen (DIN) into streams. But while DIN loading to first-order streams following forest harvest has been previously described, the downstream fate and impact of these inputs is not well understood. We evaluated the downstream fate of DIN and dissolved organic nitrogen (DON) inputs in a boreal landscape that has been altered by forest harvests over a 10-year period. The small first-order streams indicated substantial leaching of DIN, primarily as nitrate (NO3−) in response to harvests with NO3− concentrations increasing by  ∼  15-fold. NO3− concentrations at two sampling stations further downstream in the network were strongly seasonal and increased significantly in response to harvesting at the mid-sized stream, but not at the larger stream. DIN removal efficiency, Er, calculated as the percentage of "forestry derived" DIN that was retained within the stream network based on a mass-balance model was highest during the snowmelt season followed by the growing season, but declined continuously throughout the dormant season. In contrast, export of DON from the landscape indicated little removal and was essentially conservative. Overall, net removal of DIN between 2008 and 2011 accounted for  ∼  65 % of the total DIN mass exported from harvested patches distributed across the landscape. These results highlight the capacity of nitrogen-limited boreal stream networks to buffer DIN mobilization that arises from multiple clear-cuts within this landscape. Further, these findings shed light on the potential impact of anticipated measures to increase forest yields of boreal forests, such as increased fertilization and shorter forest rotations, which may increase the pressure on boreal surface waters in the future.
Influence of timing of sea ice retreat on phytoplankton size during marginal ice zone bloom period on the Chukchi and Bering shelves
Authors: Fujiwara A. , Hirawake T. , Suzuki K. , Eisner L. , Imai I. , Nishino S. , Kikuchi T. , Saitoh S.-I.
Published: January 2016

Abstract. The size structure and biomass of a phytoplankton community during the spring bloom period can affect the energy use of higher-trophic-level organisms through the predator–prey body size relationships. The timing of the sea ice retreat (TSR) also plays a crucial role in the seasonally ice-covered marine ecosystem, because it is tightly coupled with the timing of the spring bloom. Thus, it is important to monitor the temporal and spatial distributions of a phytoplankton community size structure. Prior to this study, an ocean colour algorithm was developed to derive phytoplankton size index FL, which is defined as the ratio of chlorophyll a (chl a) derived from cells larger than 5 µm to the total chl a, using satellite remote sensing for the Chukchi and Bering shelves. Using this method, we analysed the pixel-by-pixel relationships between FL during the marginal ice zone (MIZ) bloom period and TSR over the period of 1998–2013. The influences of the TSR on the sea surface temperature (SST) and changes in ocean heat content (ΔOHC) during the MIZ bloom period were also investigated. A significant negative relationship between FL and the TSR was widely found in the shelf region during the MIZ bloom season. However, we found a significant positive (negative) relationship between the SST (ΔOHC) and TSR. Specifically, an earlier sea ice retreat was associated with the dominance of larger phytoplankton during a colder and weakly stratified MIZ bloom season, suggesting that the duration of the nitrate supply, which is important for the growth of large-sized phytoplankton in this region (i.e. diatoms), can change according to the TSR. In addition, under-ice phytoplankton blooms are likely to occur in years with late ice retreat, because sufficient light for phytoplankton growth can pass through the ice and penetrate into the water columns as a result of an increase in solar radiation toward the summer solstice. Moreover, we found that both the length of the ice-free season and the annual median of FL positively correlated with the annual net primary production (APP). Thus, both the phytoplankton community composition and growing season are important for the APP in the study area. Our findings showed a quantitative relationship between the interannual variability of FL, the TSR, and the APP, which suggested that satellite remote sensing of the phytoplankton community size structure is suitable to document the impact of a recent rapid sea ice loss on the ecosystem of the study region.
Co-occurrence patterns in aquatic bacterial communities across changing permafrost landscapes
Authors: Comte J. , Lovejoy C. , Crevecoeur S. , Vincent W. F.
Published: January 2016

Abstract. Permafrost thaw ponds and lakes are widespread across the northern landscape and may play a central role in global biogeochemical cycles, yet knowledge about their microbial ecology is limited. We sampled a set of thaw ponds and lakes as well as shallow rock-basin lakes that are located in distinct valleys along a north–south permafrost degradation gradient. We applied high-throughput sequencing of the 16S rRNA gene to determine co-occurrence patterns among bacterial taxa (operational taxonomic units, OTUs), and then analyzed these results relative to environmental variables to identify variables controlling bacterial community structure. Network analysis was applied to identify possible ecological linkages among the bacterial taxa and with abiotic and biotic variables. The results showed an overall high level of shared taxa among bacterial communities within each valley; however, the bacterial co-occurrence patterns were non-random, with evidence of habitat preferences. There were taxonomic differences in bacterial assemblages among the different valleys that were statistically related to dissolved organic carbon concentration, conductivity and phytoplankton biomass. Co-occurrence networks revealed complex interdependencies within the bacterioplankton communities and showed contrasting linkages to environmental conditions among the main bacterial phyla. The thaw pond networks were composed of a limited number of highly connected taxa. This “small world network” property would render the communities more robust to environmental change but vulnerable to the loss of microbial “keystone species”. These highly connected nodes (OTUs) in the network were not merely the numerically dominant taxa, and their loss would alter the organization of microbial consortia and ultimately the food web structure and functioning of these aquatic ecosystems.
Structure and function of nematode communities across the Indian western continental margin and its oxygen minimum zone
Authors: Singh R. , Ingole B. S.
Published: January 2016

Abstract. We studied patterns of nematode distribution along the western Indian continental margin to determine the influence of habitat heterogeneity and low oxygen levels on the community's taxonomic and functional structure. A single transect, perpendicular to the coast at 14° N latitude was sampled from 34 to 2546 m depth for biological and environmental variables during August 2007. The oxygen minimum zone extended from 102 to 1001 m. Nematodes (described and undescribed) were identified to species and classified according to biological and functional traits. A total of 110 nematode species belonging to 24 families were found along the transect. Three depth zones were identified: the shelf (depth range: 34–102 m; highest nematode mean density: 176.6 ± 37 ind 10 cm−2), the slope (525–1524 m; 124.3 ± 16 ind 10 cm−2), and the basin (2001–2546 m; 62.9 ± 2 ind 10 cm−2). Across the entire study area, the dominant species were Terschellingia longicaudata, Desmodora sp. 1, Sphaerolaimus gracilis, and Theristus ensifer; their maximum density was at shelf stations. Nematode communities in different zones differed in species composition. Chromadorita sp. 2 (2.78 %) and Sphaerolaimus gracilis (2.21 %) were dominant on the shelf, whereas Terschellingia longicaudata (4.73 %) and Desmodora sp. 1 (4.42 %) were dominant on the slope, but in the basin, Halalaimus sp. 1(1.11 %) and Acantholaimus elegans (1.11 %) were dominant. The information in a particular functional group was not a simple reflection of the information in species abundance. Ecological information captured by adult length, adult shape, and life-history strategy was less site-specific and thus differed notably from information contained in other taxonomic groups. The functional composition of nematodes was strongly linked to the organic-carbon and dissolved-oxygen concentration. Seven species were found exclusively in the oxygen minimum zone: Pselionema sp. 1, Choanolaimus sp. 2, Halichoanolaimus sp. 1, Cobbia dentata, Daptonema sp. 1, Trissonchulus sp. 1, and Minolaimus sp. 1. Correlation with a number of environmental variables indicated that food quantity (measured as the organic-carbon content and chlorophyll content) and oxygen level were the major factors that influenced nematode community structure and function.
Climate, CO2 and human population impacts on global wildfire emissions
Authors: Knorr W. , Jiang L. , Arneth A.
Published: January 2016

Abstract. Wildfires are by far the largest contributor to global biomass burning and constitute a large global source of atmospheric traces gases and aerosols. Such emissions have a considerable impact on air quality and constitute a major health hazard. Biomass burning also influences the radiative balance of the atmosphere and is thus not only of societal, but also of significant scientific interest. There is a common perception that climate change will lead to an increase in emissions as hot and dry weather events that promote wildfire will become more common. However, even though a few studies have found that the inclusion of CO2 fertilisation of photosynthesis and changes in human population patterns will tend to somewhat lower predictions of future wildfire emissions, no such study has included full ensemble ranges of both climate predictions and population projections, including the effect of different degrees of urbanisation.Here, we present a series of 124 simulations with the LPJ–GUESS–SIMFIRE global dynamic vegetation–wildfire model, including a semi-empirical formulation for the prediction of burned area based on fire weather, fuel continuity and human population density. The simulations use Climate Model Intercomparison Project 5 (CMIP5) climate predictions from eight Earth system models. These were combined with two Representative Concentration Pathways (RCPs) and five scenarios of future human population density based on the series of Shared Socioeconomic Pathways (SSPs) to assess the sensitivity of emissions to the effect of climate, CO2 and humans. In addition, two alternative parameterisations of the semi-empirical burned-area model were applied. Contrary to previous work, we find no clear future trend of global wildfire emissions for the moderate emissions and climate change scenario based on the RCP 4.5. Only historical population change introduces a decline by around 15 % since 1900. Future emissions could either increase for low population growth and fast urbanisation, or continue to decline for high population growth and slow urbanisation. Only for high future climate change (RCP8.5), wildfire emissions start to rise again after ca. 2020 but are unlikely to reach the levels of 1900 by the end of the 21st century. We find that climate warming will generally increase the risk of fire, but that this is only one of several equally important factors driving future levels of wildfire emissions, which include population change, CO2 fertilisation causing woody thickening, increased productivity and fuel load and faster litter turnover in a warmer climate.
Microbial methanogenesis in the sulfate-reducing zone of surface sediments traversing the Peruvian margin
Authors: Maltby J. , Sommer S. , Dale A. W. , Treude T.
Published: January 2016

Abstract. We studied the concurrence of methanogenesis and sulfate reduction in surface sediments (0–25 cm below sea floor) at six stations (70, 145, 253, 407, 990 and 1024 m) along the Peruvian margin (12° S). This oceanographic region is characterized by high carbon export to the seafloor creating an extensive oxygen minimum zone (OMZ) on the shelf, both factors that could favor surface methanogenesis. Sediments sampled along the depth transect traversed areas of anoxic and oxic conditions in the bottom-near water. Net methane production (batch incubations) and sulfate reduction (35S-sulfate radiotracer incubation) were determined in the upper 0–25 cm b.s.f. of multiple cores from all stations, while deep hydrogenotrophic methanogenesis (> 30 cm b.s.f., 14C-bicarbonate radiotracer incubation) was determined in two gravity cores at selected sites (78 and 407 m). Furthermore, stimulation (methanol addition) and inhibition (molybdate addition) experiments were carried out to investigate the relationship between sulfate reduction and methanogenesis.Highest rates of methanogenesis and sulfate reduction in the surface sediments, integrated over 0–25 cm b.s.f., were observed on the shelf (70–253 m, 0.06–0.1 and 0.5-4.7 mmol m−2 d−1, respectively), while lowest rates were discovered at the deepest site (1024 m, 0.03 and 0.2 mmol m−2 d−1, respectively). The addition of methanol resulted in significantly higher surface methanogenesis activity, suggesting that the process was mostly based on non-competitive substrates – i.e., substrates not used by sulfate reducers. In the deeper sediment horizons, where competition was probably relieved due to the decrease of sulfate, the usage of competitive substrates was confirmed by the detection of hydrogenotrophic activity in the sulfate-depleted zone at the shallow shelf station (70 m).Surface methanogenesis appeared to be correlated to the availability of labile organic matter (C ∕ N ratio) and organic carbon degradation (DIC production), both of which support the supply of methanogenic substrates. A negative correlation between methanogenesis rates and dissolved oxygen in the bottom-near water was not obvious; however, anoxic conditions within the OMZ might be advantageous for methanogenic organisms at the sediment-water interface.Our results revealed a high relevance of surface methanogenesis on the shelf, where the ratio between surface to deep (below sulfate penetration) methanogenic activity ranged between 0.13 and 105. In addition, methane concentration profiles indicated a partial release of surface methane into the water column as well as consumption of methane by anaerobic methane oxidation (AOM) in the surface sediment. The present study suggests that surface methanogenesis might play a greater role in benthic methane budgeting than previously thought, especially for fueling AOM above the sulfate–methane transition zone.
Isotopic evidence for biogenic molecular hydrogen production in the Atlantic Ocean
Authors: Walter S. , Kock A. , Steinhoff T. , Fiedler B. , Fietzek P. , Kaiser J. , Krol M. , Popa M. E. , Chen Q. , Tanhua T. , Röckmann T.
Published: January 2016

Abstract. Oceans are a net source of molecular hydrogen (H2) to the atmosphere. The production of marine H2 is assumed to be mainly biological by N2 fixation, but photochemical pathways are also discussed. We present measurements of mole fraction and isotopic composition of dissolved and atmospheric H2 from the southern and northern Atlantic between 2008 and 2010. In total almost 400 samples were taken during 5 cruises along a transect between Punta Arenas (Chile) and Bremerhaven (Germany), as well as at the coast of Mauritania.The isotopic source signatures of dissolved H2 extracted from surface water are highly deuterium-depleted and correlate negatively with temperature, showing δD values of (−629 ± 54) ‰ for water temperatures at (27 ± 3) °C and (−249 ± 88) ‰ below (19 ± 1) °C. The results for warmer water masses are consistent with the biological production of H2. This is the first time that marine H2 excess has been directly attributed to biological production by isotope measurements. However, the isotope values obtained in the colder water masses indicate that beside possible biological production, a significant different source should be considered.The atmospheric measurements show distinct differences between both hemispheres as well as between seasons. Results from the global chemistry transport model TM5 reproduce the measured H2 mole fractions and isotopic composition well. The climatological global oceanic emissions from the GEMS database are in line with our data and previously published flux calculations. The good agreement between measurements and model results demonstrates that both the magnitude and the isotopic signature of the main components of the marine H2 cycle are in general adequately represented in current atmospheric models despite a proposed source different from biological production or a substantial underestimation of nitrogen fixation by several authors.
Multiple soil nutrient competition between plants, microbes, and mineral surfaces: model development, parameterization, and example applications in several tropical forests
Authors: Zhu Q. , Riley W. J. , Tang J. , Koven C. D.
Published: January 2016

Abstract. Soil is a complex system where biotic (e.g., plant roots, micro-organisms) and abiotic (e.g., mineral surfaces) consumers compete for resources necessary for life (e.g., nitrogen, phosphorus). This competition is ecologically significant, since it regulates the dynamics of soil nutrients and controls aboveground plant productivity. Here we develop, calibrate and test a nutrient competition model that accounts for multiple soil nutrients interacting with multiple biotic and abiotic consumers. As applied here for tropical forests, the Nutrient COMpetition model (N-COM) includes three primary soil nutrients (NH4+, NO3− and POx; representing the sum of PO43−, HPO42− and H2PO4−) and five potential competitors (plant roots, decomposing microbes, nitrifiers, denitrifiers and mineral surfaces). The competition is formulated with a quasi-steady-state chemical equilibrium approximation to account for substrate (multiple substrates share one consumer) and consumer (multiple consumers compete for one substrate) effects. N-COM successfully reproduced observed soil heterotrophic respiration, N2O emissions, free phosphorus, sorbed phosphorus and NH4+ pools at a tropical forest site (Tapajos). The overall model uncertainty was moderately well constrained. Our sensitivity analysis revealed that soil nutrient competition was primarily regulated by consumer–substrate affinity rather than environmental factors such as soil temperature or soil moisture. Our results also imply that under strong nutrient limitation, relative competitiveness depends strongly on the competitor functional traits (affinity and nutrient carrier enzyme abundance). We then applied the N-COM model to analyze field nitrogen and phosphorus perturbation experiments in two tropical forest sites (in Hawaii and Puerto Rico) not used in model development or calibration. Under soil inorganic nitrogen and phosphorus elevated conditions, the model accurately replicated the experimentally observed competition among nutrient consumers. Although we used as many observations as we could obtain, more nutrient addition experiments in tropical systems would greatly benefit model testing and calibration. In summary, the N-COM model provides an ecologically consistent representation of nutrient competition appropriate for land BGC models integrated in Earth System Models.
Map-based prediction of organic carbon in headwater streams improved by downstream observations from the river outlet
Authors: Temnerud J. , von Brömssen C. , Fölster J. , Buffam I. , Andersson J.-O. , Nyberg L. , Bishop K.
Published: January 2016

Abstract. In spite of the great abundance and ecological importance of headwater streams, managers are usually limited by a lack of information about water chemistry in these headwaters. In this study we test whether river outlet chemistry can be used as an additional source of information to improve the prediction of the chemistry of upstream headwaters (size < 2 km2), relative to models based on map information alone. We use the concentration of total organic carbon (TOC), an important stream ecosystem parameter, as the target for our study. Between 2000 and 2008, we carried out 17 synoptic surveys in 9 mesoscale catchments (size 32–235 km2). Over 900 water samples were collected in total, primarily from headwater streams but also including each catchment's river outlet during every survey. First we used partial least square regression (PLS) to model the distribution (median, interquartile range (IQR)) of headwater stream TOC for a given catchment, based on a large number of candidate variables including sub-catchment characteristics from GIS, and measured river chemistry at the catchment outlet. The best candidate variables from the PLS models were then used in hierarchical linear mixed models (MM) to model TOC in individual headwater streams. Three predictor variables were consistently selected for the MM calibration sets: (1) proportion of forested wetlands in the sub-catchment (positively correlated with headwater stream TOC), (2) proportion of lake surface cover in the sub-catchment (negatively correlated with headwater stream TOC), and (3) river outlet TOC (positively correlated with headwater stream TOC). Including river outlet TOC improved predictions, with 5–15 % lower prediction errors than when using map information alone. Thus, data on water chemistry measured at river outlets offer information which can complement GIS-based modelling of headwater stream chemistry.
Potential future fisheries yields in shelf waters: a model study of the effects of climate change and ocean acidification
Authors: van Leeuwen S. M. , Le Quesne W. F. , Parker E. R.
Published: January 2016

Abstract. We applied a coupled marine water column model to three sites in the North Sea. The three sites represent different hydrodynamic regimes and are thus representative of a wider area. The model consists of a hydro-biogeochemical model (GOTM-ERSEM-BFM) coupled one way upwards to a size-structured model representing pelagic predators and detritivores (Blanchard et al., 2009). Thus, bottom-up pressures like changing abiotic environment (climate change, chemical cycling) will have an impact on fish biomass across the size spectrum. Here, we studied three different impacts of future conditions on fish yield: climatic impacts (medium emission scenario), abiotic ocean acidification impacts (reduced pelagic nitrification), and biotic ocean acidification impacts (reduced detritivore growth rate). The three impacts were studied separately and combined, and results showed that sites within different hydrodynamic regimes can respond very differently. The seasonally stratified site showed an increase in fish yields (occurring in winter and spring), with acidification effects of the same order of magnitude as climatic effects. The permanently mixed site also showed an increase in fish yield (increase in summer, decrease in winter), due to climatic effects moderated by acidification impacts. The third site, which is characterised by large inter-annual variability in thermal stratification duration, showed a decline in fish yields (occurring in winter) due to decline in the benthic system which forms an important carbon pathway at this site. All sites displayed a shift towards a more pelagic-oriented system.
Ecosystem model-based approach for modeling the dynamics of 137Cs transfer to marine plankton populations: application to the western North Pacific Ocean after the Fukushima nuclear power plant accident
Authors: Belharet M. , Estournel C. , Charmasson S.
Published: January 2016

Abstract. Huge amounts of radionuclides, especially 137Cs, were released into the western North Pacific Ocean after the Fukushima nuclear power plant (FNPP) accident that occurred on 11 March 2011, resulting in contamination of the marine biota. In this study we developed a radioecological model to estimate 137Cs concentrations in phytoplankton and zooplankton populations representing the lower levels of the pelagic trophic chain. We coupled this model to a lower trophic level ecosystem model and an ocean circulation model to take into account the site-specific environmental conditions in the area. The different radioecological parameters of the model were estimated by calibration, and a sensitivity analysis to parameter uncertainties was carried out, showing a high sensitivity of the model results, especially to the 137Cs concentration in seawater, to the rates of accumulation from water and to the radionuclide assimilation efficiency for zooplankton. The results of the 137Cs concentrations in planktonic populations simulated in this study were then validated through comparison with the data available in the region after the accident. The model results have shown that the maximum concentrations in plankton after the accident were about 2 to 4 orders of magnitude higher than those observed before the accident, depending on the distance from FNPP. Finally, the maximum 137Cs absorbed dose rate for phyto- and zooplankton populations was estimated to be about 5  ×  10−2 µGy h−1, and was, therefore, lower than the predicted no-effect dose rate (PNEDR) value of 10 µGy h−1 defined in the ERICA assessment approach.
Greenhouse gas balance of cropland conversion to bioenergy poplar short-rotation coppice
Authors: Sabbatini S. , Arriga N. , Bertolini T. , Castaldi S. , Chiti T. , Consalvo C. , Njakou Djomo S. , Gioli B. , Matteucci G. , Papale D.
Published: January 2016

Abstract. The production of bioenergy in Europe is one of the strategies conceived to reduce greenhouse gas (GHG) emissions. The suitability of the land use change from a cropland (REF site) to a short-rotation coppice plantation of hybrid poplar (SRC site) was investigated by comparing the GHG budgets of these two systems over 24 months in Viterbo, Italy. This period corresponded to a single rotation of the SRC site. The REF site was a crop rotation between grassland and winter wheat, i.e. the same management of the SRC site before the conversion to short-rotation coppice. Eddy covariance measurements were carried out to quantify the net ecosystem exchange of CO2 (FCO2), whereas chambers were used to measure N2O and CH4 emissions from soil. The measurements began 2 years after the conversion of arable land to SRC so that an older poplar plantation was used to estimate the soil organic carbon (SOC) loss due to SRC establishment and to estimate SOC recovery over time. Emissions from tractors and from production and transport of agricultural inputs (FMAN) were modelled. A GHG emission offset, due to the substitution of natural gas with SRC biomass, was credited to the GHG budget of the SRC site. Emissions generated by the use of biomass (FEXP) were also considered. Suitability was finally assessed by comparing the GHG budgets of the two sites. CO2 uptake was 3512 ± 224 g CO2 m−2 at the SRC site in 2 years, and 1838 ± 107 g CO2 m−2 at the REF site. FEXP was equal to 1858 ± 240 g CO2 m−2 at the REF site, thus basically compensating for FCO2, while it was 1118 ± 521 g CO2 m−2 at the SRC site. The SRC site could offset 379.7 ± 175.1 g CO2eq m−2 from fossil fuel displacement. Soil CH4 and N2O fluxes were negligible. FMAN made up 2 and 4 % in the GHG budgets of SRC and REF sites respectively, while the SOC loss was 455 ± 524 g CO2 m−2 in 2 years. Overall, the REF site was close to neutrality from a GHG perspective (156 ± 264 g CO2eq m−2), while the SRC site was a net sink of 2202 ± 792 g CO2eq m−2. In conclusion the experiment led to a positive evaluation from a GHG viewpoint of the conversion of cropland to bioenergy SRC.
Spaceborne potential for examining taiga-tundra ecotone form and vulnerability
Authors: Montesano P. M. , Sun G. , Dubayah R. O. , Ranson K. J.
Published: January 2016

Abstract. In the taiga-tundra ecotone (TTE), vegetation structure change can be subtle and site-dependent, yet occur across the circumpolar region. This asynchronous change may be related to the horizontal and vertical patterns of vegetation structure such as tree density and height within TTE forest patches (i.e., ecotone form) that is driven by local site conditions and linked to ecotone dynamics. The unique circumstance of subtle, variable and widespread vegetation change warrants the application of spaceborne data including high-resolution (< 5 m) spaceborne imagery (HRSI) across broad scales for examining TTE form and predicting dynamics. Recent work demonstrates the fundamental uncertainty of spaceborne-derived forest structure estimates in sparse boreal forests at the plot-scale. Analyses of forest structure at the patch-scale in the TTE provide a means to examine both vertical and horizontal components of ecotone form, their association with landscape characteristics and environmental factors, and a basis for examining the variation of patch characteristics across sites. In this study we demonstrate the potential of spaceborne data for integrating forest height and density to assess TTE form at the scale of TTE forest patches across the circumpolar biome by (i) mapping forest patches in study sites along the TTE in northern Siberia with a multi-resolution suite of spaceborne data, and (ii) examining the uncertainty of forest patch height from this suite of data across ecotone sites of primarily diffuse TTE forms. Results demonstrate the opportunities for improving patch-scale spaceborne estimates of forest height, the vertical component of TTE form, with HRSI. The distribution of relative maximum height uncertainty based on prediction intervals is centered at ~ 40 %. We discuss this uncertainty in light of a conceptual model of general ecotone forms. We highlight how the uncertainty of spaceborne estimates of height can contribute to the uncertainty in identifying TTE forms. A focus on reducing the uncertainty of height estimates in forest patches may improve depiction of TTE form, which may help explain variable forest responses in the TTE to climate change and the vulnerability of portions of the TTE to forest structure change.
Transfer of diazotroph derived nitrogen towards non-diazotrophic planktonic communities: a comparative study between Trichodesmium erythraeum, Crocosphaera watsonii and Cyanothece sp.
Authors: Berthelot H. , Bonnet S. , Grosso O. , Cornet V. , Barani A.
Published: January 2016

Abstract. Biological dinitrogen (N2) fixation is the major source of new nitrogen (N) for the open ocean, and thus promotes marine productivity, in particular in the vast N-depleted regions of the surface ocean. Yet, the fate of the diazotroph-derived N (DDN) in marine ecosystems is poorly understood and its transfer to auto- and heterotrophic surrounding plankton communities is rarely measured due to technical limitations. Moreover, the different diazotrophs involved in N2 fixation (Trichodesmium spp. vs. UCYN) exhibit distinct patterns of N2 fixation and inhabit different ecological niches, thus having potentially different fates in the marine food webs, that remains to be explored. Here we used nanometer scale secondary ion mass spectrometry (nanoSIMS) coupled with 15N2 isotopic labelling and flow cytometry cell sorting to examine the DDN transfer to specific groups of natural phytoplankton and bacteria during artificially-induced diazotroph blooms in New Caledonia (southwestern Pacific). The fate of the DDN was compared according to the three diazotrophs: the filamentous and colony forming Trichodesmium erythraeum (IMS101), and the unicellular strains Crocosphaera watsonii WH8501 and Cyanothece ATCC51142. After 48 h, 7–17 % of the N2 fixed during the experiment was transferred to the dissolved pool and 6–12 % was transferred to non-diazotrophic plankton. The transfer was twice as high during the T. erythraeum bloom than during the C. watsonii and Cyanothece blooms, arguing that filamentous diazotrophs blooms are more efficient at promoting non-diazotrophic production in N depleted areas. The amount of DDN released in the dissolved pool did not appear as a good indicator of the DDN transfer efficiency towards the non-diazotrophic plankton. In contrast, the 15N-enrichment of the extracellular ammonium (NH4+) pool was a good indicator of the DDN transfer efficiency: it was significantly higher in the T. erythraeum than in unicellular diazotroph blooms, leading to a DDN transfer twice as efficient. This suggests that NH4+ was the main pathway of the DDN transfer from diazotrophs to non-diazotrophs. The three simulated diazotroph blooms led to significant increases in non-diazotrophic plankton biomass. This increase in biomass was first associated with heterotrophic bacteria followed phytoplankton, indicating that heterotrophs took the most advantage of the DDN in this oligotrophic ecosystem.
Biogeochemical fluxes and fate of diazotroph derived nitrogen in the food web after a phosphate enrichment: Modeling of the VAHINE mesocosms experiment
Authors: Gimenez A. , Baklouti M. , Bonnet S. , Moutin T.
Published: January 2016

Abstract. The VAHINE mesocosm experiment in the oligotrophic waters of the Noumea lagoon (New Caledonia) aimed to assess the role of the nitrogen input through N2 fixation on carbon production and export, and to study the fate of diazotroph-derived nitrogen (DDN) throughout the planktonic food web. A 1D-vertical biogeochemical mechanistic model was used in addition to the in situ experiment to complement our comprehension of the dynamics of the planktonic ecosystem and the main biogeochemical carbon (C), nitrogen (N), phosphate (P) fluxes. The mesocosms were intentionally enriched with 0.8 μmol.L−1 of P to trigger the development of diazotrophs and amplify biogeochemical fluxes. Two simulations were run, one with and the other without the phosphate enrichment. In the P-enriched simulation, N2 fixation, primary production and C export increased by 201, 208 and 87 %, respectively, consistent with the observed trends observed in the mesocosms (+ 124 %, + 141 %, + 261 % for N2 fixation, PP and C export, respectively). The increase in primary and export productions became significant 10 days after the DIP enrichment, indicating that i) several days were necessary to obtain a significant response at the population scale, and ii) classical methods (short-term microscosms experiments) used to quantify nutrient limitations of primary production may not be relevant. The model allowed to follow the fate of fixed N2 by providing over time the proportion of DDN in each compartment (mineral and organic) of the model. At the end of the simulation (25 days), 43 % of the DDN was found in the non-diazotroph organisms, 33 % in diazotrophs, 16 % in the dissolved organic nitrogen pool, 3 % in the particulate detrital organic pool and 5 % in traps, indicating that N2 fixation efficiently benefitted to non-diazotrophic organisms and contributed to C export.
Contribution and pathways of diazotroph derived nitrogen to zooplankton during the VAHINE mesocosm experiment in the oligotrophic New Caledonia lagoon
Authors: Hunt B. P. V. , Bonnet S. , Berthelot H. , Conroy B. J. , Foster R. A. , Pagano M.
Published: January 2016

Abstract. In oligotrophic tropical and subtropical oceans, where strong stratification can limit the replenishment of surface nitrate, dinitrogen (N2) fixation by diazotrophs can represent a significant source of nitrogen (N) for primary production. The VAHINE experiment was designed to examine the fate of diazotroph derived nitrogen (DDN) in such ecosystems. In austral summer 2013 three large (~ 50 m3) in situ mesocosms were deployed for 23 days in the New Caledonia lagoon, an ecosystem that typifies the low-nutrient, low-chlorophyll environment, to stimulate diazotroph production. The zooplankton component of the study aimed to measure the incorporation of DDN into zooplankton biomass, and assess the role of direct diazotroph grazing by zooplankton as a DDN uptake pathway. Inside the mesocosms the diatom-diazotroph association (DDA) het-1 predominated during day 5-15 while the unicellular diazotrophic cyanobacteria UCYN-C predominated during day 15-23. A Trichodesmium bloom was observed in the lagoon (outside the mesocosms) towards the end of the experiment. The zooplankton community was dominated by copepods (63 % of total abundance) for the duration of the experiment. Using two source N isotope mixing models we estimated a mean ~ 30 % contribution of DDN to zooplankton biomass at the start of the experiment, indicating that the natural summer peak of N2 fixation in the lagoon was already contributing significantly to the zooplankton. Stimulation of N2 fixation BNF in the mesocosms corresponded with a generally low level enhancement of DDN contribution to zooplankton biomass, but with a peak of ~ 70 % in Mesocosm 1 following the UCYN-C bloom. qPCR analysis targeting four of the common diazotroph groups present in the mesocosms (Trichodesmium, het-1, het-2, UCYN-C) demonstrated that all were ingested by copepod grazers and that target abundance generally corresponded with their in situ abundance. 15N2 labeled grazing experiments provided evidence for direct ingestion and assimilation of UCYN-C-derived N by the zooplankton, but not for het-1 and Trichodesmium, supporting an important role of secondary pathways of DDN to the zooplankton for the latter groups, i.e., DDN contributions to the dissolved N pool and uptake by non-diazotrophs. This study appears to provide the first evidence of direct UCYN-C grazing by zooplankton, and indicates that UCYN-C-derived N contributes significantly to the zooplankton food web in the New Caledonia lagoon though a combination of direct grazing and secondary pathways.
Ecological Controls on N2O Emission in Surface Litter and Near-surface Soil of a Managed Pasture: Modelling and Measurements
Authors: Grant R. F. , Neftel A. , Calanca P.
Published: January 2016

Abstract. Large variability in N2O emissions from managed grasslands may occur because most emissions originate in surface litter or near-surface soil where variability in soil water content (θ) and temperature (Ts) is greatest. To determine whether temporal variability in θ and Ts of surface litter and near-surface soil could explain that in N2O emissions, a simulation experiment was conducted with ecosys, a comprehensive mathematical model of terrestrial ecosystems in which processes governing N2O emissions were represented at high temporal and spatial resolution. Model performance was verified by comparing N2O emissions, CO2 and energy exchange, and θ and Ts modelled by ecosys with those measured by automated chambers, eddy covariance (EC) and soil sensors at an hourly time-scale during several emission events from 2004 to 2009 in an intensively managed pasture at Oensingen, Switzerland. Both modelled and measured events were induced by precipitation following harvesting and subsequent fertilizing or manuring. These events were brief (2 – 5 days) with maximum N2O effluxes that varied from < 1 mg N m-2 h-1 in early spring and autumn to > 3 mg N m-2 h-1 in summer. Only very small emissions were modelled or measured outside these events. In the model, emissions were generated almost entirely in surface litter or near-surface (0 – 2 cm) soil, at rates driven by N availability with fertilization vs. N uptake with grassland regrowth, and by O2 limitation from wetting relative to O2 demand from respiration. In the model, NOx availability relative to O2 limitation governed both the reduction of more oxidized electron acceptors to N2O and the reduction of N2O to N2, so that the magnitude of N2O emissions was not simply related to surface and near-surface θ and Ts. Modelled N2O emissions were found to be sensitive to defoliation intensity and timing (relative to that of fertilization) which controlled plant N uptake and soil θ and Ts prior to and during emission events. In a model sensitivity study, reducing LAI remaining after defoliation to one-half that under current practice and delaying harvesting by 5 days raised N2O emissions by as much as 80% during subsequent events and by an average of 43% annually. The global warming potential from annual N2O emissions in this intensively managed grassland largely offset those from net C uptake in both modelled and field experiments. However model results indicated that this offset could be adversely affected by suboptimal harvest intensity and timing.
Seasonal and diurnal variation in CO fluxes from an agricultural bioenergy crop
Authors: Pihlatie M. , Rannik Ü. , Haapanala S. , Peltola O. , Shurpali N. , Martikainen P. J. , Lind S. , Hyvönen N. , Virkajärvi P. , Zahniser M. , Mammarella I.
Published: January 2016

Abstract. Carbon monoxide (CO) is an important reactive trace gas in the atmosphere, while its sources and sinks in the biosphere are only poorly understood. Emissions of CO have been reported from a wide range of soil-plant systems. However, soils are generally considered as a sink of CO due to microbial oxidation processes. We measured CO fluxes by micrometeorological eddy covariance method from a bioenergy crop (reed canary grass) in Eastern Finland over April to November 2011. Continuous flux measurements allowed us to assess the seasonal and diurnal variability, and to compare the CO fluxes to simultaneously measured CO2, N2O and heat fluxes as well as relevant meteorological, soil and plant variables in order to investigate factors driving the CO exchange. The reed canary grass crop was a net source of CO from mid-April to mid-June, and a net sink throughout the rest of the measurement period from July to November 2011. CO fluxes had a distinct diurnal pattern with a net CO uptake in the night and an emission during the daytime with a maximum emission at noon. This pattern was most pronounced during the spring and early summer, during which the most significant relationships were found between daytime CO fluxes and global radiation, net radiation, sensible heat flux, soil heat flux, relative humidity and net ecosystem exchange. The strong positive correlation between CO fluxes and radiation suggests towards abiotic CO production processes, whereas, the relationship of CO fluxes with net ecosystem exchange indicates towards biotic CO formation during crop growth. The study shows a clear need for detailed process-studies accompanied with continuous flux measurements of CO exchange to improve the understanding of the processes associated with CO exchange.
In situ interactive characteristics of reactive minerals in soil colloids and soil carbon preservation differentially revealed by nanoscale secondary ion mass spectrometry and X-ray absorption fine structure spectroscopy
Authors: Xiao Jian , He Xinhua , Zhou Ying , Zheng Lirong , Hao Jialong , Ran Wei , Shen Qirong , Yu Guanghui
Published: January 2016

Abstract. Mineral binding is a major mechanism for soil carbon (C) stabilization. However, the submicron information about the in situ mechanisms of different fertilization practices affecting organo-mineral complexes and associated C preservation remains unclear. Here, we applied nano-scale 20 secondary ion mass spectrometry (NanoSIMS), X-ray photoelectron spectroscopy (XPS), and X-ray absorption fine structure spectroscopy (XAFS) to examine differentiating effects of inorganic versus organic fertilization on interactions between highly reactive minerals and soil C preservation. To examine such interactions, soils and their extracted colloids were collected during a 24-year long-term fertilization period (1990-2014) (no-fertilization, Control; chemical nitrogen (N), phosphorus (P) and 25 potassium (K) fertilization, NPK; and NPK plus swine manure fertilization, NPKM). The results for different fertilization conditions showed a ranked soil organic matter (SOM) concentration with NPKM > NPK > Control. Meanwhile, oxalate extracted Al (Alo), Fe (Feo), short range ordered (SRO) Al (Alxps), Fe (Fexps), and dissolved organic carbon (DOC) ranked with NPKM > Control > NPK, but ratios of DOC/Alxps and DOC/Fexps ranked with NPKM > NPK > Control. Compared with the NPK 30 treatment, NPKM treatment enhanced the C binding loadings of Al and Fe minerals in soil colloids at the submicron scale. Furthermore, a greater concentration of highly reactive Al and Fe minerals was present under NPKM than under NPK. Together, these submicron scale findings suggest that both reactive mineral species and their associations with C are differentially affected by inorganic and organic fertilization.
Drainage reduces CO2 uptake and increases CO2 efflux by a Siberian floodplain due to shifts in vegetation community and soil thermal characteristics
Authors: Kwon M. J. , Heimann M. , Luus K. A. , Schuur E. A. G. , Zimov N. , Zimov S. A. , Goeckede M.
Published: January 2016

Abstract. With increasing air temperatures and shifts in precipitation patterns forecasted in the Arctic over the coming decades, thawing of ice-rich permafrost is expected to change the hydrological conditions in large parts of the region by creating mosaics of wetter and drier areas. The objective of this study is to investigate how lowered water table depths of formerly wet floodplain ecosystems affect CO2 fluxes measured with a closed chamber syst em, focusing on the roles of changes in vegetation community structure and soil thermal characteristics. We found that a decade-long drainage significantly increased the abundance of shrubs but decreased that of Eriophorum angustifolium, which subsequently made Carex species dominant. These two changes had opposing influences on photosynthetic uptake during the growing season: increased abundance of shrubs slightly increased gross primary production while replacement of Eriophorum by Carex significantly decreased it. Drainage also diminishes the heat capacity and thermal conductivity of soil, leading to increased soil temperatures in shallow layers during the daytime and decreased soil temperatures in deeper layers, and therefore reduced thaw depths. This soil temperature regime can intensify growing-season ecosystem respiration by up to 93 % theoretically. Overall, drainage increased net CO2 uptake (net ecosystem exchange) by 16 % over 20 days in 2013 but decreased it by 37 % over 66 days in 2014. During the frozen season, the drained transect emitted four times more CO2 than the undrained transect. In summary, the net effect of these complex changes recently weakened net CO2 uptake in the drained areas.