bluuebunny/crossref_metadata_2025 huggingface dataset:
Absolute Configuration of Mycosporine-Like Amino Acids, Their Wound Healing Properties and In Vitro Anti-Aging Effects
Authors: Orfanoudaki Maria , Hartmann Anja , Alilou Mostafa , Gelbrich Thomas , Planchenault Patricia , Derbré Séverine , Schinkovitz Andreas , Richomme Pascal , Hensel Andreas , Ganzera Markus
Published: January 2020

Mycosporine-like amino acids (MAAs) are water-soluble metabolites, reported to exhibit strong UV-absorbing properties. They have been found in a wide range of marine organisms, especially those that are exposed to extreme levels of sunlight, to protect them against solar radiation. In the present study, the absolute configuration of 14 mycosporine-like-amino acids was determined by combining the results of electronic circular dichroism (ECD) experiments and that of advanced Marfey’s method using LC-MS. The crystal structure of a shinorine hydrate was determined from single crystal X-ray diffraction data and its absolute configuration was established from anomalous-dispersion effects. Furthermore, the anti-aging and wound-healing properties of these metabolites were evaluated in three different assays namely the inhibition of collagenase, inhibition of advanced glycation end products (AGEs) and wound healing assay (scratch assay).
Dynamic Steady State by Unlimited Unidirectional Plastic Deformation of Crystalline Materials Deforming by Dislocation Glide at Low to Moderate Temperatures
Authors: Gil Sevillano Javier
Published: January 2020

This paper presents an outline of the quest for the mechanical steady state that an unlimited unidirectional plastic strain applied at low to moderate temperature is presumed to develop in single-phase crystalline materials deforming by dislocation glide, with particular emphasis on its athermal strength limit. Fifty years ago, the study of crystalline plasticity was focused on the strain range covered by tensile tests, i.e., on true strains less than unity; the canonic stress–strain behavior was the succession of stages I, II, and III, the latter supposedly leading to a steady state defining a temperature and strain rate-dependent flow stress limit. The experimentally available strain range was increased up to Von Mises equivalent strains as high as 10 by the extensive use of torsion tests or by combinations of intermittent deformations by wire drawing or rolling with tensile tests during the 1970s. The assumed exhaustion of the strain-hardening rate was not verified; new deformation stages, IV and V, were proposed, and the predicted strength limit for deformed materials was nearly doubled. Since the advent of severe plastic deformation techniques in the 1980s, such a range was still significantly augmented. Strains of the order of several hundreds were routinely reached, but former conclusions relative to the limit of the flow stress were not substantially changed. However, very recently, the plastic strain range has allegedly been expanded to 105 true strain units by using torsion under high pressure (HPT), surprisingly for some common metals, without experimental confirmation of having reached any steady state. This overview has been motivated by the scientific and technological interest of such an open-ended story. A tentative explanation for the newly proposed ultra-severe hardening deformation stage is given.
Quantitative Relationships between Mechanical Properties and Microstructure of Ti17 Alloy after Thermomechanical Treatment
Authors: Han Yan , Zhao Fei , Liu Yuan , Huang Chaowen
Published: January 2020

In this paper, the relationships between the thermomechanical treatments (TMT), the microstructural evolution the mechanical properties of Ti17 alloy were investigated. The results indicate the coarsening behavior of lamellar α was sensitive to the aging temperature during the process of TMT. The thickness of lamellar α changed from 0.19 to 0.38 μm with an increase in the aging temperature. Moreover, both tensile properties and impact toughness vary with the thickness of lamellar α. The tensile strength increases with the increase of the thickness of lamellar α the plasticity and impact toughness the opposite trend. The quantitative investigations found that there is a linear relationship between the tensile properties and the thickness of lamellar α the tensile properties could be adjusted in the range of 1191~1062 MPa and 1163~1039 MPa to obtain ultimate tensile strength and yield strength as well as 11~16% elongation and 23~33% reduction of area by varying the thickness of lamellar α. Meanwhile, the impact toughness could be adjusted in the range of 46 ~53 J/cm2. The high correlation coefficients imply that the linear equation is reliable to describe the relationships between the mechanical properties and the thickness of lamellar α for Ti17 alloy.
Cold-Rolling Strain Hardening Effect on the Microstructure, Serration-Flow Behaviour and Dislocation Density of Friction Stir Welded AA5083
Authors: Sajuri Zainuddin , Mohamad Selamat Nor Fazilah , Baghdadi Amir Hossein , Rajabi Armin , Omar Mohd Zaidi , Kokabi Amir Hossein , Syarif Junaidi
Published: January 2020

5083 aluminium (Al) alloy materials have extensive structural applications in transportation industries because of their high strength-to-weight ratio and corrosion resistance. However, under conventional fusion weldings, these materials are limited by their porosity, hot cracking, and distortion. Herein, friction stir welding (FSW) was performed to join a similar AA5083 alloy. A post-weld cold-rolling (PWCR) process was applied on joint samples at different thickness-reduction percentages (i.e., 10%, 20%, and 40%) to identify the effect of strain hardening on the microstructure and mechanical properties of the friction-stir-welded joint of AA5083 while considering the serration-flow behaviour at stress–strain curves and dislocation density of the post-weld cold-rolled (PWCRed) samples. FSW induced a 20% reduction in the tensile strength of the joint samples relative to the base metal. PWCR also reduced the average grain size at the nugget zone and base metal because of the increase in plastic deformation imposed on the samples. Furthermore, PWCR increased the dislocation density because of the interaction among dislocation stress fields. Consequently, the tensile strength of the friction-stir-welded joint increased with the increased cold-rolling percentage and peaked at 403 MPa for PWCRed–40%, which significantly improved the serration-flow behaviour of stress–strain and welding efficiency up to 123%.
The Significance of Central Segregation of Continuously Cast Billet on Banded Microstructure and Mechanical Properties of Section Steel
Authors: Guo Fujian , Wang Xuelin , Wang Jingliang , Misra R. D. K. , Shang Chengjia
Published: January 2020

The solidification structure and segregation of continuously cast billets produced by different continuous casting processes are investigated to elucidate their effect on segregated bands in hot-rolled section steel. It suggested that segregated spots are mainly observed in the equiaxed crystal zone of a billet. The solidification structure is directly related to superheating and the intensities of secondary cooling. To a certain extent, the ratio of the columnar crystal increases with the increase of superheating and secondary cooling. Moreover, the number of spot segregations decreases with the decrease of the equiaxed crystal ratio. After hot rolling, the segregation spots are deformed to form segregated bands in steels. The severe segregation of Mn in segregated bands corresponds with that in the segregation spots. The elongation ratio and low temperature toughness deteriorate significantly by a high fraction of degenerate pearlite caused by central segregation. With a decrease of central segregation, the total elongation is increased by 10% and the ductile–brittle transition temperature (DBTT) is also reduced from −10 to −40 °C. According to the experimental results, columnar crystal in billets is preferred to effectively reduce the degree of central segregation and further improve low temperature toughness and the elongation ratio.
Characteristic Microbiomes Correlate with Polyphosphate Accumulation of Marine Sponges in South China Sea Areas
Authors: Ou Huilong , Li Mingyu , Wu Shufei , Jia Linli , Hill Russell T. , Zhao Jing
Published: January 2020

Some sponges have been shown to accumulate abundant phosphorus in the form of polyphosphate (polyP) granules even in waters where phosphorus is present at low concentrations. But the polyP accumulation occurring in sponges and their symbiotic bacteria have been little studied. The amounts of polyP exhibited significant differences in twelve sponges from marine environments with high or low dissolved inorganic phosphorus (DIP) concentrations which were quantified by spectral analysis, even though in the same sponge genus, e.g., Mycale sp. or Callyspongia sp. PolyP enrichment rates of sponges in oligotrophic environments were far higher than those in eutrophic environments. Massive polyP granules were observed under confocal microscopy in samples from very low DIP environments. The composition of sponge symbiotic microbes was analyzed by high-throughput sequencing and the corresponding polyphosphate kinase (ppk) genes were detected. Sequence analysis revealed that in the low DIP environment, those sponges with higher polyP content and enrichment rates had relatively higher abundances of cyanobacteria. Mantel tests and canonical correspondence analysis (CCA) examined that the polyP enrichment rate was most strongly correlated with the structure of microbial communities, including genera Synechococcus, Rhodopirellula, Blastopirellula, and Rubripirellula. About 50% of ppk genes obtained from the total DNA of sponge holobionts, had above 80% amino acid sequence similarities to those sequences from Synechococcus. In general, it suggested that sponges employed differentiated strategies towards the use of phosphorus in different nutrient environments and the symbiotic Synechococcus could play a key role in accumulating polyP.
Lactic Acid Bacteria Isolation from Spontaneous Sourdough and Their Characterization Including Antimicrobial and Antifungal Properties Evaluation
Authors: Bartkiene Elena , Lele Vita , Ruzauskas Modestas , Domig Konrad J. , Starkute Vytaute , Zavistanaviciute Paulina , Bartkevics Vadims , Pugajeva Iveta , Klupsaite Dovile , Juodeikiene Grazina , Mickiene Ruta , Rocha João Miguel
Published: January 2020

This research effort aimed at isolating and phenotypically characterizing lactic acid bacteria (LAB) isolates from a spontaneous rye sourdough manufactured following traditional protocols, as well as at evaluating their antimicrobial and antifungal properties as key features for future industrial applications. Thirteen LAB strains of potential industrial interest were isolated and identified to species-level via PCR. Most of the sourdough isolates showed versatile carbohydrate metabolisms. The Leuconostoc mesenteroides No. 242 and Lactobacillus brevis No. 173 demonstrated to be gas producers; thus, revealing their heterofermenter or facultative homofermenter features. Viable counts higher than 7.0 log10 (CFU/mL) were observed for Lactobacillus paracasei No. 244, Lactobacillus casei No. 210, L. brevis No. 173, Lactobacillus farraginis No. 206, Pediococcus pentosaceus No. 183, Lactobacillus uvarum No. 245 and Lactobacillus plantarum No. 135 strains, after exposure at pH 2.5 for 2 h. Moreover, L. plantarum No. 122, L. casei No. 210, Lactobacillus curvatus No. 51, L. paracasei No. 244, and L. coryniformins No. 71 showed growth inhibition properties against all the tested fifteen pathogenic strains. Finally, all LAB isolates showed antifungal activities against Aspergillus nidulans, Penicillium funiculosum, and Fusarium poae. These results unveiled the exceptionality of spontaneous sourdough as a source of LAB with effective potential to be considered in the design of novel commercial microbial single/mixed starter cultures, intended for application in a wide range of agri-food industries, where the antimicrobial and antifungal properties are often sought and necessary. In addition, metabolites therefrom may also be considered as important functional and bioactive compounds with high potential to be employed in food and feed, as well as cosmetic and pharmaceutical applications.
Antifungal Activity of Beauveria bassiana Endophyte against Botrytis cinerea in Two Solanaceae Crops
Authors: Barra-Bucarei Lorena , France Iglesias Andrés , Gerding González Macarena , Silva Aguayo Gonzalo , Carrasco-Fernández Jorge , Castro Jean Franco , Ortiz Campos Javiera
Published: January 2020

Botrytis cinerea causes substantial losses in tomato and chili pepper crops worldwide. Endophytes have shown the potential for the biological control of diseases. The colonization ability of native endophyte strains of Beauveria bassiana and their antifungal effect against B. cinerea were evaluated in Solanaceae crops. Root drenching with B. bassiana was applied, and endophytic colonization capacity in roots, stems, and leaves was determined. The antagonistic activity was evaluated using in vitro dual culture and also plants by drenching the endophyte on the root and by pathogen inoculation in the leaves. Ten native strains were endophytes of tomato, and eight were endophytes of chili pepper. All strains showed significant in vitro antagonism against B. cinerea (30–36%). A high antifungal effect was observed, and strains RGM547 and RGM644 showed the lowest percentage of the surface affected by the pathogen. Native strains of B. bassiana colonized tomato and chili pepper tissues and provided important levels of antagonism against B. cinerea.
Enhancing the 1-Aminocyclopropane-1-Carboxylate Metabolic Rate of Pseudomonas sp. UW4 Intensifies Chemotactic Rhizocompetence
Authors: Gao Xiyang , Li Tao , Liu Wenliang , Zhang Yan , Shang Di , Gao Yuqian , Qi Yuancheng , Qiu Liyou
Published: January 2020

1-aminocyclopropane-1-carboxylic acid (ACC) is a strong metabolism-dependent chemoattractant for the plant beneficial rhizobacterium Pseudomonas sp. UW4. It is unknown whether enhancing the metabolic rate of ACC can intensify the chemotaxis activity towards ACC and rhizocompetence. In this study, we selected four promoters to transcribe the UW4 ACC deaminase (AcdS) gene in the UW4 ΔAcdS mutant. PA is the UW4 AcdS gene promoter, PB20, PB10 and PB1 are synthetic promoters. The order of the AcdS gene expression level and AcdS activity of the four strains harboring the promoters were PB20 > PA > PB10 > PB1. Interestingly, the AcdS activity of the four strains and their parent strain UW4 was significantly positively correlated with their chemotactic activity towards ACC, rhizosphere colonization, roots elongation and dry weight promotion. The results released that enhancing the AcdS activity of PGPRenable them to achieve strong chemotactic responses to ACC, rhizocompetence and plant growth promotion.
Candida albicans Ubiquitin and Heat Shock Factor-Type Transcriptional Factors Are Involved in 2-Dodecenoic Acid-Mediated Inhibition of Hyphal Growth
Authors: Yang Dongliang , Hu Yanling , Yin Zixin , Gao Qianru , Zhang Yuqian , Chan Fong Yee , Zeng Guisheng , Weng Lixing , Wang Lianhui , Wang Yue
Published: January 2020

Cis-2-dodecenoic acid (i.e., Burkholderia cenocepacia Diffusible Signal Factor, BDSF), a signaling molecule produced by Burkholderia cenocepacia but not by Candida albicans, can prevent Candida albicans hyphal formation. The mechanism by which BDSF controls the morphological switch of C. albicans is still unknown. To address this issue, we used the cDNA microarray method to investigate the differential expression of genes in C. albicans in the presence and absence of BDSF. The microarray result indicated that 305 genes were significantly different in the expression level. This included the downregulation of 75 genes and the upregulation of 230 genes. Based on the microarray data, a mutant library was screened to search for genes, once mutated, conferred insensitivity to BDSF. The results showed that the repressors (Ubi4 and Sfl1 proteins) and the activator (Sfl2 protein) of filamentous growth are involved in the BDSF regulation of hyphal morphogenesis. Ubi4, an ubiquitin polypeptide that participates in ubiquitin-mediated protein turnover, is the protein required for the degradation of Sfl2. Sfl1 and Sfl2 proteins antagonistically control C. albicans morphogenesis. In the hyphal induction condition, the amount of Ubi4 and Sfl1 protein increased rapidly with the exogenous addition of BDSF. As a result, the protein level of the activator of filamentous growth, Sfl2, decreased correspondingly, thereby facilitating the C. albicans cells to remain in the yeast form.
Pharmacological and Nutritional Modulation of Vascular Calcification
Authors: Vossen Liv M. , Kroon Abraham A. , Schurgers Leon J. , de Leeuw Peter W.
Published: January 2020

Vascular calcification is an independent predictor of cardiovascular disease, and therefore, inhibition or regression of this processes is of clinical importance. The standard care regarding prevention and treatment of cardiovascular disease at this moment mainly depends on drug therapy. In animal and preclinical studies, various forms of cardiovascular drug therapy seem to have a positive effect on vascular calcification. In particular, calcium channel blockers and inhibitors of the renin–angiotensin–aldosteron system slowed down arterial calcification in experimental animals. In humans, the results of trials with these drugs are far less pronounced and often contradictory. There is limited evidence that the development of new atherosclerotic lesions may be retarded in patients with coronary artery disease, but existing lesions can hardly be influenced. Although statin therapy has a proven role in the prevention and treatment of cardiovascular morbidity and mortality, it is associated with both regression and acceleration of the vascular calcification process. Recently, nutritional supplements have been recognized as a potential tool to reduce calcification. This is particularly true for vitamin K, which acts as an inhibitor of vascular calcification. In addition to vitamin K, other dietary supplements may also modulate vascular function. In this narrative review, we discuss the current state of knowledge regarding the pharmacological and nutritional possibilities to prevent the development and progression of vascular calcification.
Using Sensory Cues to Optimise the Satiety Value of a Reduced-Calorie Product Labelled ‘Healthier Choice’
Authors: McCrickerd Keri , Tay Priscilla Pei Sian , Tang Claudia Shuning , Forde Ciarán Gerard
Published: January 2020

Reformulation strategies to reduce the energy density of commonly consumed foods and beverages are intended to support weight management, but expectations generated by labelling these as ‘healthier’ alternatives can have unintended effects on the product’s sensory evaluations and consumption behaviours. We compared the impact of four different strategies for presenting a lower-calorie beverage to consumers on product perceptions, short-term appetite and energy intake. Participants (N = 112) consumed higher- (211 kcal/portion) and lower-calorie (98 kcal/portion) fixed-portion soymilks in the morning across two test days, with the lower-calorie version presented in one of four contexts varying in label information and sensory quality: (1) sensory-matched/unlabelled, (2) sensory-matched/labelled, (3) sensory-reduced (less sweet and creamy)/labelled, and (4) sensory-enhanced (sweeter and creamier)/labelled. The label was Singapore’s Healthier Choice Symbol, which also highlighted that the soymilk was lower calorie. Changes in reported appetite, ad libitum lunch intake, and self-reported intake for the rest of the text day were recorded. Results indicated that total energy intake was consistently lower on the days the lower calorie beverages were consumed, regardless of how they were presented. However, the ‘healthier choice’ label increased hunger prior to lunch and reduced the soymilks’ perceived thickness and sweetness compared to the same unlabelled version. Increasing the product’s sensory intensity successfully maintained liking, experienced sensory quality and appetite. Results suggest that food companies wanting to explicitly label product reformulations could combine messages of ‘lower calorie’ and ‘healthier choice’ with appropriate taste and texture enhancements to maintain acceptance and avoid negative effects on appetite.
Benefits and Risks of Moderate Alcohol Consumption on Cardiovascular Disease: Current Findings and Controversies
Authors: Chiva-Blanch Gemma , Badimon Lina
Published: January 2020

Alcohol has a hormetic physiological behavior that results in either increased or decreased cardiovascular risk depending on the amount consumed, drinking frequency, pattern of consumption, and the outcomes under study or even the type of alcoholic beverage consumed. However, the vast majority of studies elucidating the role of alcohol in cardiovascular and in the global burden of disease relies on epidemiological studies of associative nature which carry several limitations. This is why the cardiovascular benefits of low–moderate alcohol consumption are being questioned and perhaps might have been overestimated. Thus, the aim of this review was to critically discuss the current knowledge on the relationship between alcohol intake and cardiovascular disease. Besides new evidence associating low and moderate alcohol consumption with decreased risk of cardiovascular disease, several questions remain unanswered related to the concrete amount of safe consumption, the type of alcoholic beverage, and the age-, sex-, and genetic/ethnical-specific differences in alcohol consumption.
Determinants and Suitability of Carotenoid Reflection Score as a Measure of Carotenoid Status
Authors: Rush Elaine , Amoah Isaac , Diep Tung , Jalili-Moghaddam Shabnam
Published: January 2020

Carotenoids, orange-coloured pigments found in vegetables, fruit, eggs and dairy foods, act as antioxidants and vitamin A precursors in the human body. Skin carotenoid concentration is a biomarker of vegetable and fruit intake. The aim was to identify determinants of skin carotenoid concentration by measuring “Veggie Meter™” carotenoid reflection spectroscopy scores (CRS) from the fingertip of adults with a range of ages, ethnicity and body size. Frequencies of daily intake of vegetables and fruit and weekly intake of pumpkin and carrot, dark green leafy vegetables (DGLV), eggs (yolk), and dairy were determined from a self-completed food-frequency-questionnaire. A total of 571 (324 Women, 247 Men) adults, aged 16 to 85 years, completed measurements. The CRS ranged from 83 to 769, with a median of 327. Women and men did not score differently. For all participants there were negative correlations of CRS with weight (r = −0.312) and BMI (r = −0.338) and positive correlations with weekly intakes of DGLV (r = 0.242) and carrots and pumpkin (r = 0.202). Based on a review of health outcomes associated with plasma carotenoids, 82% of the participants in the current study are at moderate risk, or more, of negative health outcomes. Determinants of carotenoid status were body size, intake of DGLV, carrots and pumpkin, and ethnicity.
Effects of Probiotics on Metabolic Syndrome: A Systematic Review of Randomized Clinical Trials
Authors: Tenorio-Jiménez Carmen , Martínez-Ramírez María José , Gil Ángel , Gómez-Llorente Carolina
Published: January 2020

The aim of this systematic review is to evaluate whether the use of probiotics has any effect on the components of metabolic syndrome (MetS) before patients develop type 2 diabetes. A qualitative systematic review, following the Cochrane methodology, and a comprehensive literature search of randomized controlled trials (RCTs) were conducted in PubMed and Scopus from inception until 4 July 2019. According to our inclusion criteria, nine clinical studies were finally analyzed, corresponding to six RCTs. Probiotics intake in patients with MetS resulted in improvements in body mass index, blood pressure, glucose metabolism, and lipid profile in some studies. Regarding inflammatory biomarkers, probiotics also positively affected the soluble vascular cell adhesion molecule 1 (sVCAM-1), interleukine-6 (IL-6), tumor necrosis factor α (TNF-α), vascular endothelial growth factor (VEGF), and thrombomodulin. Despite the diversity of the published studies, the intake of probiotics for patients with MetS may offer a discrete improvement in some of the clinical characteristics of the MetS and a decrease in inflammatory biomarkers. Nevertheless, these beneficial effects seem to be marginal compared to drug therapy and a healthy lifestyle and clinically non-relevant.
Association of Sleep Quality and Macronutrient Distribution: A Systematic Review and Meta-Regression
Authors: Sutanto Clarinda Nataria , Wang Min Xian , Tan Denise , Kim Jung Eun
Published: January 2020

Sleep is involved in metabolic, emotional and cognitive regulation and is therefore an essential part of our health. Although an association between sleep quality and macronutrient intake has been reported, studies on the effect of macronutrient distribution with sleep quality are limited, and available results are inconsistent. In this study, we aim to assess the association between sleep quality and macronutrient distribution in healthy adults from systematically reviewed cross-sectional studies and randomized controlled trials (RCTs). A total of 19 relevant articles were selected and it was observed that good sleepers (sleep duration ≥ 7 h, global sleep score ≤ 5, sleep latency ≤ 30 min and sleep efficiency >85%) had a higher energy distribution from dietary protein than poor sleepers. On the other hand, good sleepers showed a relatively lower percentage of energy from dietary carbohydrate and fat than poor sleepers. However, meta-regression analysis revealed no dose-dependent association between the macronutrient distributions and sleep duration. These results suggest that consuming a greater proportion of dietary protein may benefit on improving sleep quality in healthy adults. However, findings may be susceptible to reverse causality and additional RCTs are needed.
Gastroesophageal Reflux Disease and Probiotics: A Systematic Review
Authors: Cheng Jing , Ouwehand Arthur C.
Published: January 2020

Probiotic is little known for its benefits on upper gastrointestinal health. The objective of this systematic review was to examine the efficacy of probiotics in alleviating the frequency and severity of symptoms in gastroesophageal reflux disease (GERD) in the general adult population. The PubMed and Web of Science databases were searched for prospective studies on GERD, heartburn, regurgitation, and dyspepsia, without any limitation on sample size. The Jadad scale was used to evaluate the quality of randomized controlled trials. In total, 13 prospective studies that were published in 12 articles were included in the analysis and scored per the Jadad scale as high- (five studies), medium- (two), and low- (six) quality. One article reported on two probiotic groups; thus, 14 comparisons were included in the selected studies, of which 11 (79%) reported positive benefits of probiotics on symptoms of GERD. Five out of 11 positive outcomes (45%) noted benefits on reflux symptoms: three noted reduced regurgitation; improvements in reflux or heartburn were seen in one study; five (45%) saw improvements in dyspepsia symptoms; and nine (81%) saw improvements in other upper gastrointestinal symptoms, such as nausea (three studies), abdominal pain (five), and gas-related symptoms (four), such as belching, gurgling, and burping. In conclusion, probiotic use can be beneficial for GERD symptoms, such as regurgitation and heartburn. However, proper placebo-controlled, randomized, and double-blinded clinical trials with a sufficient number of participants are warranted to confirm its efficacy in alleviating these symptoms. Further, interventions with longer durations and an intermediate analysis of endpoints should be considered to determine the proper therapeutic window.
Membrane Binding, Cellular Cholesterol Content and Resealing Capacity Contribute to Epithelial Cell Damage Induced by Suilysin of Streptococcus suis
Authors: Vötsch Désirée , Willenborg Maren , Oelemann Walter M.R. , Brogden Graham , Valentin-Weigand Peter
Published: January 2020

Streptococcus (S.) suis is a major cause of economic losses in the pig industry worldwide and is an emerging zoonotic pathogen. One important virulence-associated factor is suilysin (SLY), a toxin that belongs to the family of cholesterol-dependent pore-forming cytolysins (CDC). However, the precise role of SLY in host–pathogen interactions is still unclear. Here, we investigated the susceptibility of different respiratory epithelial cells to SLY, including immortalized cell lines (HEp-2 and NPTr cells), which are frequently used in in vitro studies on S. suis virulence mechanisms, as well as primary porcine respiratory cells, which represent the first line of barrier during S. suis infections. SLY-induced cell damage was determined by measuring the release of lactate dehydrogenase after infection with a virulent S. suis serotype 2 strain, its isogenic SLY-deficient mutant strain, or treatment with the recombinant protein. HEp-2 cells were most susceptible, whereas primary epithelial cells were hardly affected by the toxin. This prompted us to study possible explanations for these differences. We first investigated the binding capacity of SLY using flow cytometry analysis. Since binding and pore-formation of CDC is dependent on the membrane composition, we also determined the cellular cholesterol content of the different cell types using TLC and HPLC. Finally, we examined the ability of those cells to reseal SLY-induced pores using flow cytometry analysis. Our results indicated that the amount of membrane-bound SLY, the cholesterol content of the cells, as well as their resealing capacity all affect the susceptibility of the different cells regarding the effects of SLY. These findings underline the differences of in vitro pathogenicity models and may further help to dissect the biological role of SLY during S. suis infections.
Adhesion-Regulating Molecule from Haemonchus contortus: Potential Antigen for Diagnosis of Early Infection in Goats
Authors: Aimulajiang Kalibixiati , Naqvi Muhammad Ali-ul-Husnain , Chu Wen , Lu Mingmin , Tian Xiaowei , Bu Yongqian , Memon Muhammad Ali , Li Xiangrui , Xu Lixin , Song Xiaokai , Yan Ruofeng
Published: January 2020

Haemonchus contortus, a blood-sucking nematode of ruminants, causes large economic losses worldwide. Diagnosis of infection mainly depends on the evaluation of clinical signs and fecal examination. However, this has limitations for the diagnosis of early or light infections, where serological diagnosis seems to be more accurate and reliable. In this study, the recombinant H. contortus adhesion-regulating molecule protein (rHCADRM) was expressed and purified, and its diagnostic potential was evaluated. Serum samples from goats experimentally infected with H. contortus (n = 5) were collected at 0 (before infection, negative control), 7, 14, 21, 35, 49, 63, 85, and 103 days post-infection (DPI). The reactions between rHcADRM and goat serum were tested using Western blot (WB) analysis. The results show that rHcADRM can be recognized in the serum as early as 14 DPI, and the antibody against rHcADRM in infected goat could be maintained for over 89 days. No reaction was found between rHcADRM and antibodies against Trichinella spiralis, Fasciola hepatica, or Toxoplasma gondii. An indirect enzyme-linked immune sorbent assay (ELISA) was developed based on rHcADRM. The optimal coating antigen (279 ng of rHcADRM/well) and serum dilutions (1:50) were determined by checkerboard titration. A total of 64 serum samples, including 32 from H. contortus infection goats and 32 from helminth-free goats, were used to determine the positive (0.362) and negative (0.306) cut-off values for the ELISA. The results show this serological diagnosis method is highly sensitive (90.6%) and specific (93.75%). The coefficient of variation within run and between runs was less than 11%. To apply this indirect ELISA during field examination, 51 serum samples were randomly collected from goat farms and tested using this method. The result showed that 19.6% (10/51) of goats were infected with H. contortus, which was 100% consistent with the necropsy result, higher than that of fecal examination (15.7%, 8/51). These results indicate that rHcADRM could be a potential antigen for diagnosis of H. contortus infection in goats.
The Xylella fastidiosa-Resistant Olive Cultivar “Leccino” Has Stable Endophytic Microbiota during the Olive Quick Decline Syndrome (OQDS)
Authors: Vergine Marzia , Meyer Joana B. , Cardinale Massimiliano , Sabella Erika , Hartmann Martin , Cherubini Paolo , De Bellis Luigi , Luvisi Andrea
Published: January 2020

Xylella fastidiosa is a highly virulent pathogen that causes Olive Quick Decline Syndrome (OQDS), which is currently devastating olive plantations in the Salento region (Apulia, Southern Italy). We explored the microbiome associated with X. fastidiosa-infected (Xf-infected) and -uninfected (Xf-uninfected) olive trees in Salento, to assess the level of dysbiosis and to get first insights into the potential role of microbial endophytes in protecting the host from the disease. The resistant cultivar “Leccino” was compared to the susceptible cultivar “Cellina di Nardò”, in order to identify microbial taxa and parameters potentially involved in resistance mechanisms. Metabarcoding of 16S rRNA genes and fungal ITS2 was used to characterize both total and endophytic microbiota in olive branches and leaves. “Cellina di Nardò” showed a drastic dysbiosis after X. fastidiosa infection, while “Leccino” (both infected and uninfected) maintained a similar microbiota. The genus Pseudomonas dominated all “Leccino” and Xf-uninfected “Cellina di Nardò” trees, whereas Ammoniphilus prevailed in Xf-infected “Cellina di Nardò”. Diversity of microbiota in Xf-uninfected “Leccino” was higher than in Xf-uninfected “Cellina di Nardò”. Several bacterial taxa specifically associated with “Leccino” showed potential interactions with X. fastidiosa. The maintenance of a healthy microbiota with higher diversity and the presence of cultivar-specific microbes might support the resistance of “Leccino” to X. fastidiosa. Such beneficial bacteria might be isolated in the future for biological treatment of the OQDS.
The Hematopoietic Cell Transplant Pharmacist: A Call to Action
Authors: Clemmons Amber
Published: January 2020

Recently, the required training and credentials for as well as the various roles of the hematopoietic cell transplant (HCT) pharmacist have been endorsed by the leading organizations in cellular therapy, the American Society of Transplant and Cellular Therapy and the European Society of Blood and Bone Marrow Transplantation. While these documents establish the roles a HCT pharmacist can fulfill within the multi-disciplinary team, few reports have evaluated the impact of the HCT pharmacist on clinical, financial, or quality outcomes. Further, a paucity of information has been reported on types of practice models, such as the use of collaborative practice agreements, or described effective methods to overcome the barriers to the increased utilization of HCT pharmacists. Herein, a brief summary of available information is provided to aid readers in understanding the state of the science for pharmacists practicing in this specialty with the goal to stimulate further research to justify the roles of HCT pharmacists and the correlation of such research to various outcome measures. Practitioners are encouraged to build upon this existing knowledge to create the novel integration and elevation of pharmacy practice to improve outcomes for patients, providers, and payors.
Changes in an Arbuscular Mycorrhizal Fungi Community Along an Environmental Gradient
Authors: Vieira Larissa Cardoso , Silva Danielle Karla Alves da , Escobar Indra Elena Costa , Silva Julyana Maria da , Moura Ingrid Andrêssa de , Oehl Fritz , Silva Gladstone Alves da
Published: January 2020

Gradual environmental changes are determining factors in the disposition of plants and associated organisms, such as arbuscular mycorrhizal fungi (AMF). The objective of this study was to evaluate the AMF species communities in a tropical semi-arid region of NE Brazil under decreasing clay content at a mountain top area forming a vegetative mosaic of dry forests, savanna-like shrubland and humid montane forests. Through field and trap culture samples, 80 species of AMF were identified belonging to 25 genera, of which Acaulospora and Glomus were the most representative. In general, representatives of the order Gigasporales were indicators of sites with lower clay content and showed greater abundance in these sites. As expected, less richness was found in the site with higher clay content, but there was no variation in the Shannon-Weaver index in the gradient studied. The areas showed different assemblies of AMF among the sites with higher and lower clay content, and the main factors structuring the species were carbon, clay and potential acidity. In addition, field samples and trap cultures showed different assemblies; through the use of cultures it was possible to detect additional species. Soil properties have been found to be determinants for the distribution of these microorganisms and further studies in different vegetation types can help to understand the ecological preferences of AMF species.
Functional Diversity and Invasive Species Influence Soil Fertility in Experimental Grasslands
Authors: Teixeira Leonardo H. , Yannelli Florencia A. , Ganade Gislene , Kollmann Johannes
Published: January 2020

Ecosystem properties can be positively affected by plant functional diversity and compromised by invasive alien plants. We performed a community assembly study in mesocosms manipulating different functional diversity levels for native grassland plants (communities composed by 1, 2 or 3 functional groups) to test if functional dispersion could constrain the impacts of an invasive alien plant (Solidago gigantea) on soil fertility and plant community biomass via complementarity. Response variables were soil nutrients, soil water nutrients and aboveground biomass. We applied linear mixed-effects models to assess the effects of functional diversity and S. gigantea on plant biomass, soil and soil water nutrients. A structural equation model was used to evaluate if functional diversity and invasive plants affect soil fertility directly or indirectly via plant biomass and soil pH. Invaded communities had greater total biomass but less native plant biomass than uninvaded ones. While functional diversity increased nutrient availability in the soil solution of uninvaded communities, invasive plants reduced nutrient concentration in invaded soils. Functional diversity indirectly affected soil water but not soil nutrients via plant biomass, whereas the invader reduced native plant biomass and disrupted the effects of diversity on nutrients. Moreover, invasive plants reduced soil pH and compromised phosphate uptake by plants, which can contribute to higher phosphate availability and its possible accumulation in invaded soils. We found little evidence for functional diversity to constrain invasion impacts on nutrients and plant biomass. Restoration of such systems should consider other plant community features than plant trait diversity to reduce establishment of invasive plants.
The Development of Crassulacean Acid Metabolism (CAM) Photosynthesis in Cotyledons of the C4 Species, Portulaca grandiflora (Portulacaceae)
Authors: Guralnick Lonnie J. , Gilbert Kate E. , Denio Diana , Antico Nicholas
Published: January 2020

Portulaca grandiflora simultaneously utilizes both the C4 and Crassulacean acid metabolism (CAM) photosynthetic pathways. Our goal was to determine whether CAM developed and was functional simultaneously with the C4 pathway in cotyledons of P. grandiflora. We studied during development whether CAM would be induced with water stress by monitoring the enzyme activity, leaf structure, JO2 (rate of O2 evolution calculated by fluorescence analysis), and the changes in titratable acidity of 10 and 25 days old cotyledons. In the 10 days old cotyledons, C4 and CAM anatomy were evident within the leaf tissue. The cotyledons showed high titratable acid levels but a small CAM induction. In the 25 days old cotyledons, there was a significant acid fluctuation under 7 days of water stress. The overall enzyme activity was reduced in the 10 days old plants, while in the 25 days old plants CAM activity increased under water-stressed conditions. In addition to CAM, the research showed the presence of glycine decarboxylase in the CAM tissue. Thus, it appears both pathways develop simultaneously in the cotyledons but the CAM pathway, due to anatomical constraints, may be slower to develop than the C4 pathway. Cotyledons showed the ancestral Atriplicoid leaf anatomy, which leads to the question: Could a CAM cell be the precursor to the C4 pathway? Further study of this may lead to understanding into the evolution of C4 photosynthesis in the Portulaca.
A Cytosolic Protein Kinase STY46 in Arabidopsis thaliana Is Involved in Plant Growth and Abiotic Stress Response
Authors: Dong Shaoyun , Zhang Fenglan , Beckles Diane M.
Published: January 2020

Starch provides plants with carbon and energy during stressful periods; however, relatively few regulators of starch metabolism under stress-induced carbon starvation have been discovered. We studied a protein kinase Ser/Thr/Tyr (STY) 46, identified by gene co-expression network analysis as a potential regulator of the starch starvation response in Arabidopsis thaliana. We showed that STY46 was induced by (1) abscisic acid and prolonged darkness, (2) by abiotic stressors, including salinity and osmotic stress, and (3) by conditions associated with carbon starvation. Characterization of STY46 T-DNA knockout mutants indicated that there was functional redundancy among the STY gene family, as these genotypes did not show strong phenotypes. However, Arabidopsis with high levels of STY46 transcripts (OE-25) grew faster at the early seedling stage, had higher photosynthetic rates, and more carbon was stored as protein in the seeds under control conditions. Further, OE-25 source leaf accumulated more sugars under 100 mM NaCl stress, and salinity also accelerated root growth, which is consistent with an adaptive response. Salt-stressed OE-25 partitioned 14C towards sugars and amino acids, and away from starch and protein in source leaves. Together, these findings suggested that STY46 may be part of the salinity stress response pathway that utilizes starch during early plant growth.
PAST: The Pathway Association Studies Tool to Infer Biological Meaning from GWAS Datasets
Authors: Thrash Adam , Tang Juliet D. , DeOrnellis Mason , Peterson Daniel G. , Warburton Marilyn L.
Published: January 2020

In recent years, a bioinformatics method for interpreting genome-wide association study (GWAS) data using metabolic pathway analysis has been developed and successfully used to find significant pathways and mechanisms explaining phenotypic traits of interest in plants. However, the many scripts implementing this method were not straightforward to use, had to be customized for each project, required user supervision, and took more than 24 h to process data. PAST (Pathway Association Study Tool), a new implementation of this method, has been developed to address these concerns. PAST has been implemented as a package for the R language. Two user-interfaces are provided; PAST can be run by loading the package in R and calling its methods, or by using an R Shiny guided user interface. In testing, PAST completed analyses in approximately half an hour to one hour by processing data in parallel and produced the same results as the previously developed method. PAST has many user-specified options for maximum customization. Thus, to promote a powerful new pathway analysis methodology that interprets GWAS data to find biological mechanisms associated with traits of interest, we developed a more accessible, efficient, and user-friendly tool. These attributes make PAST accessible to researchers interested in associating metabolic pathways with GWAS datasets to better understand the genetic architecture and mechanisms affecting phenotypes.
Complete Chloroplast Genome of Paphiopedilum delenatii and Phylogenetic Relationships among Orchidaceae
Authors: Vu Huyen-Trang , Tran Ngan , Nguyen Thanh-Diem , Vu Quoc-Luan , Bui My-Huyen , Le Minh-Tri , Le Ly
Published: January 2020

Paphiopedilum delenatii is a native orchid of Vietnam with highly attractive floral traits. Unfortunately, it is now listed as a critically endangered species with a few hundred individuals remaining in nature. In this study, we performed next-generation sequencing of P. delenatii and assembled its complete chloroplast genome. The whole chloroplast genome of P. delenatii was 160,955 bp in size, 35.6% of which was GC content, and exhibited typical quadripartite structure of plastid genomes with four distinct regions, including the large and small single-copy regions and a pair of inverted repeat regions. There were, in total, 130 genes annotated in the genome: 77 coding genes, 39 tRNA genes, 8 rRNA genes, and 6 pseudogenes. The loss of ndh genes and variation in inverted repeat (IR) boundaries as well as data of simple sequence repeats (SSRs) and divergent hotspots provided useful information for identification applications and phylogenetic studies of Paphiopedilum species. Whole chloroplast genomes could be used as an effective super barcode for species identification or for developing other identification markers, which subsequently serves the conservation of Paphiopedilum species.
Stomatal and Photosynthetic Traits Are Associated with Investigating Sodium Chloride Tolerance of Brassica napus L. Cultivars
Authors: Mohamed Ibrahim A. A. , Shalby Nesma , Bai Chenyang , Qin Meng , Agami Ramadan A. , Jie Kuai , Wang Bo , Zhou Guangsheng
Published: January 2020

The negative effects of salt stress vary among different rapeseed cultivars. In this study, we investigated the sodium chloride tolerance among 10 rapeseed cultivars based on membership function values (MFV) and Euclidean cluster analyses by exposing seedlings to 0, 100, or 200 mM NaCl. The NaCl toxicity significantly reduced growth, biomass, endogenous K+ levels, relative water content and increased electrolyte leakage, soluble sugar levels, proline levels, and antioxidant enzyme activities. SPAD values were highly variable among rapeseed cultivars. We identified three divergent (tolerant, moderately tolerant, and sensitive) groups. We found that Hua6919 and Yunyoushuang2 were the most salt-tolerant cultivars and that Zhongshuang11 and Yangyou9 were the most salt-sensitive cultivars. The rapeseed cultivars were further subjected to photosynthetic gas exchange and anatomical trait analyses. Among the photosynthetic gas exchange and anatomical traits, the stomatal aperture was the most highly correlated with salinity tolerance in rapeseed cultivars and thus, is important for future studies that aim to improve salinity tolerance in rapeseed. Thus, we identified and characterized two salt-tolerant cultivars that will be useful for breeding programs that aim to develop salt-tolerant rapeseed.