bluuebunny/crossref_metadata_2025 huggingface dataset:
Vertical structure and diurnal variability of ammonia exchange potential within an intensively managed grass canopy
Authors: Herrmann B. , Mattsson M. , Jones S. K. , Cellier P. , Milford C. , Sutton M. A. , Schjoerring J. K. , Neftel A.
Published: April 2010

Abstract. Stomatal ammonia compensation points (χs) of grass species on a mixed fertilized grassland were determined by measurements of apoplastic [NH4+] and [H>+] in the field. Calculated χs values were compared with in-canopy atmospheric NH3 concentration (χa) measurements. Leaf apoplastic [NH4+] increased by a factor of two from the lowest level in the canopy to the top level. Bulk leaf [NH4+] and especially [NO3−] slightly increased at the bottom of the canopy and these concentrations were very high in senescent plant litter. Calculated χs values were below atmospheric χs at all canopy levels measured, indicating that the grassland was characterized by NH3 deposition before cutting. This was confirmed by the χa profile, showing the lowest χa close to the ground (15 cm above soil surface) and an increase in χa with canopy height. Neither χs nor χa could be measured close to the soil surface, however, the [NH4+] in the litter material indicated a high potential for NH3 emission. A diurnal course in apoplastic [NH4+] was seen in the regrowing grass growing after cutting, with highest concentration around noon. Both apoplastic and tissue [NH4+] increased in young grass compared to tall grass. Following cutting, in-canopy gradients of atmospheric χa showed NH3 emission but since calculated χs values of the cut grass were still lower than atmospheric NH3 concentrations, the emissions could not entirely be explained by stomatal NH3 loss. High tissue [NH4+] in the senescent plant material indicated that this fraction constituted an NH3 source. After fertilization, [NH4+] increased both in apoplast and leaf tissue with the most pronounced increase in the former compared to the latter. The diurnal pattern in apoplastic [NH4+] was even more pronounced after fertilization and calculated χs values were generally higher, but remained below atmospheric [NH3].
High frequency Barium profiles in shells of the Great Scallop Pecten maximus: a methodical long-term and multi-site survey in Western Europe
Authors: Barats A. , Amouroux D. , Chauvaud L. , Pécheyran C. , Lorrain A. , Thébault J. , Church T. M. , Donard O. F. X.
Published: April 2010

Abstract. Skeletal barium/calcium ([Ba]/[Ca])shell ratios were measured every third daily striae in 39 flat valves of the Great Scallop Pecten maximus collected in temperate coastal environments of Western Europe. A methodical evaluation of the ([Ba]/[Ca])shell ratio was performed for the first time and demonstrates that ([Ba]/[Ca])shell profiles are reproducible for several scallop individuals from the same population (2-year old; 3 shells/year), over a 7-year period (1998–2004), and from different coastal environments in France (42–49° N). As previously determined in the shells of other bivalve species, ([Ba]/[Ca])shell profiles generally exhibited a background ratio punctuated by two transient maxima occurring in early and late summer. Background partition coefficient (DBa=0.11±0.03, in 2000) was similar to that previously reported in P. maximus shells, suggesting a direct shell uptake of dissolved seawater Ba (Gillikin et al., 2008). The 7-year survey in the Bay of Brest of the high frequency ([Ba]/[Ca])shell profiles in the scallop's shell was exploited to better constrain both the occurrence and the amplitude of the summer Ba relative enrichments as influenced by environmental processes. Seawater Ba contents in 2000 underlined significant particulate Ba inputs at the sediment water interface (SWI) during ([Ba]/[Ca])shell peak events. These Ba inputs are thus suggested to be subsequently induced by a pelagic biogenic process, which mainly occurs under summer post-bloom conditions in relationship to the cycling of particulate organic matter and associated Ba. The long term survey reveals that such pelagic Ba cycling processes are responsible for particulate Ba inputs to the sediment water interface (SWI). Subsequent indirect Ba uptake by the bivalve results in higher ([Ba]/[Ca])shell ratios, in that archived Ba within the shell cannot be used as a direct paleo productivity tracer. Our methodical approach, based on a multi-year and multi-site-survey of ([Ba]/[Ca])shell ratio in Scallop bivalves, allows us to establish the potential application of such high frequency archives for further biogeochemical and ecological investigations of bivalves in the coastal environment.
Spatial distribution and functional significance of leaf lamina shape in Amazonian forest trees
Authors: Malhado A. C. M. , Whittaker R. J. , Malhi Y. , Ladle R. J. , ter Steege H. , Butt N. , Aragão L. E. O. C. , Quesada C. A. , Murakami-Araujo A. , Phillips O. L. , Peacock J. , López-González G. , Baker T. R. , Anderson L. O. , Arroyo L. , Almeida S. , Higuchi N. , Killeen T. J. , Monteagudo A. , Neill D. A. , Pitman N. C. A. , Prieto A. , Salomão R. P. , Vásquez-M. R. , Laurance W. F. , Ramírez A. H.
Published: April 2010

Abstract. Leaves in tropical forests come in an enormous variety of sizes and shapes, each of which can be ultimately viewed as an adaptation to the complex problem of optimising the capture of light for photosynthesis. However, the fact that many different shape "strategies" coexist within a habitat demonstrate that there are many other intrinsic and extrinsic factors involved, such as the differential investment in support tissues required for different leaf lamina shapes. Here, we take a macrogeographic approach to understanding the function of different lamina shape categories. Specifically, we use 106 permanent plots spread across the Amazon rainforest basin to: 1) describe the geographic distribution of some simple metrics of lamina shape in plots from across Amazonia, and; 2) identify and quantify relationships between key environmental parameters and lamina shape in tropical forests. Because the plots are not randomly distributed across the study area, achieving this latter objective requires the use of statistics that can account for spatial auto-correlation. We found that between 60–70% of the 2791 species and 83 908 individual trees in the dataset could be classified as having elliptic leaves (= the widest part of the leaf is on an axis in the middle fifth of the long axis of the leaf). Furthermore, the average Amazonian tree leaf is 2.5 times longer than it is wide and has an entire margin. Contrary to theoretical expectations we found little support for the hypothesis that narrow leaves are an adaptation to dry conditions. However, we did find strong regional patterns in leaf lamina length-width ratios and several significant correlations with precipitation variables suggesting that water availability may be exerting an as yet unrecognised selective pressure on leaf shape of rainforest trees. Some support was found for the hypothesis that narrow leaves are an adaptation to low nutrient soils. Furthermore, we found a strong correlation between the proportion of trees with non-entire laminas (dissected, toothed, etc.) and mean annual temperature once again supporting the well documented association that provides a basis for reconstructing past temperature regimes.
Impact of atmospheric and terrestrial CO2 feedbacks on fertilization-induced marine carbon uptake
Authors: Oschlies A.
Published: April 2010

Abstract. The sensitivity of oceanic CO2 uptake to alterations in the marine biological carbon pump, such as brought about by natural or purposeful ocean fertilization, has repeatedly been investigated by studies employing numerical biogeochemical ocean models. It is shown here that the results of such ocean-centered studies are very sensitive to the assumption made about the response of the carbon reservoirs on the atmospheric side of the sea surface. Assumptions made include prescribed atmospheric pCO2, an interactive atmospheric CO2 pool exchanging carbon with the ocean but not with the terrestrial biosphere, and an interactive atmosphere that exchanges carbon with both oceanic and terrestrial carbon pools. The impact of these assumptions on simulated annual to millennial oceanic carbon uptake is investigated for a hypothetical increase in the C:N ratio of the biological pump and for an idealized enhancement of phytoplankton growth. Compared to simulations with interactive atmosphere, using prescribed atmospheric pCO2 overestimates the sensitivity of the oceanic CO2 uptake to changes in the biological pump, by about 2%, 25%, 100%, and >500% on annual, decadal, centennial, and millennial timescales, respectively. The smaller efficiency of the oceanic carbon uptake under an interactive atmosphere is due to the back flux of CO2 that occurs when atmospheric CO2 is reduced. Adding an interactive terrestrial carbon pool to the atmosphere-ocean model system has a small effect on annual timescales, but increases the simulated fertilization-induced oceanic carbon uptake by about 4%, 50%, and 100% on decadal, centennial, and millennial timescales, respectively, for pCO2 sensitivities of the terrestrial carbon storage in the middle range of the C4MIP models (Friedlingstein et al., 2006). For such sensitivities, a substantial fraction of oceanic carbon uptake induced by natural or purposeful ocean fertilization originates, on timescales longer than decades, not from the atmosphere but from the terrestrial biosphere.
Calcification of the cold-water coral Lophelia pertusa, under ambient and reduced pH
Authors: Maier C. , Hegeman J. , Weinbauer M. G. , Gattuso J.-P.
Published: April 2010

Abstract. The cold-water coral Lophelia pertusa is one of the few species able to build reef-like structures and a 3-dimensional coral framework in the deep oceans. Furthermore, deep cold-water coral bioherms may be among the first marine ecosystems to be affected by ocean acidification. Colonies of L. pertusa were collected during a cruise in 2006 to cold-water coral bioherms of the Mingulay reef complex (Hebrides, North Atlantic). Shortly after sample collection onboard these corals were labelled with calcium-45. The same experimental approach was used to assess calcification rates and how those changed due to reduced pH during a cruise to the Skagerrak (North Sea) in 2007. The highest calcification rates were found in youngest polyps with up to 1% d−1 new skeletal growth and average rates of 0.11±0.02% d−1±S.E.). Lowering pH by 0.15 and 0.3 units relative to the ambient level resulted in calcification being reduced by 30 and 56%. Lower pH reduced calcification more in fast growing, young polyps (59% reduction) than in older polyps (40% reduction). Thus skeletal growth of young and fast calcifying corallites suffered more from ocean acidification. Nevertheless, L. pertusa exhibited positive net calcification (as measured by 45Ca incorporation) even at an aragonite saturation state (Ωa) below 1.
Planktic foraminiferal shell thinning in the Arabian Sea due to anthropogenic ocean acidification?
Authors: de Moel H. , Ganssen G. M. , Peeters F. J. C. , Jung S. J. A. , Kroon D. , Brummer G. J. A. , Zeebe R. E.
Published: April 2010

Abstract. About one third of the anthropogenic carbon dioxide (CO2) released into the atmosphere in the past two centuries has been taken up by the ocean. As CO2 invades the surface ocean, carbonate ion concentrations and pH are lowered. Laboratory studies indicate that this reduces the calcification rates of marine calcifying organisms, including planktic foraminifera. Such a reduction in calcification resulting from anthropogenic CO2 emissions has not been observed, or quantified in the field yet. Here we present the findings of a study in the Western Arabian Sea that uses shells of the surface water dwelling planktic foraminifer Globigerinoides ruber in order to test the hypothesis that anthropogenically induced acidification has reduced shell calcification of this species. We found that light, thin-walled shells from the surface sediment are younger (based on 14C and δ13C measurements) than the heavier, thicker-walled shells. Shells in the upper, bioturbated, sediment layer were significantly lighter compared to shells found below this layer. These observations are consistent with a scenario where anthropogenically induced ocean acidification reduced the rate at which foraminifera calcify, resulting in lighter shells. On the other hand, we show that seasonal upwelling in the area also influences their calcification and the stable isotope (δ13C and δ18O) signatures recorded by the foraminifera shells. Plankton tow and sediment trap data show that lighter shells were produced during upwelling and heavier ones during non-upwelling periods. Seasonality alone, however, cannot explain the 14C results, or the increase in shell weight below the bioturbated sediment layer. We therefore must conclude that probably both the processes of acidification and seasonal upwelling are responsible for the presence of light shells in the top of the sediment and the age difference between thick and thin specimens.
On observational and modelling strategies targeted at regional carbon exchange over continents
Authors: Gerbig C. , Dolman A. J. , Heimann M.
Published: April 2010

Abstract. Estimating carbon exchange at regional scales is paramount to understanding feedbacks between climate and the carbon cycle, but also to verifying climate change mitigation such as emission reductions and strategies compensating for emissions such as carbon sequestration. This paper discusses evidence for a number of important shortcomings of current generation modelling frameworks designed to provide regional scale budgets from atmospheric observations. Current top-down and bottom-up approaches targeted at deriving consistent regional scale carbon exchange estimates for biospheric and anthropogenic sources and sinks are hampered by a number of issues: we show that top-down constraints using point measurements made from tall towers, although sensitive to larger spatial scales, are however influenced by local areas much more strongly than previously thought. On the other hand, classical bottom-up approaches using process information collected at the local scale, such as from eddy covariance data, need up-scaling and validation on larger scales. We therefore argue for a combination of both approaches, implicitly providing the important local scale information for the top-down constraint, and providing the atmospheric constraint for up-scaling of flux measurements. Combining these data streams necessitates quantifying their respective representation errors, which are discussed. The impact of these findings on future network design is highlighted, and some recommendations are given.
Diagenetic changes in Concholepas concholepas shells (Gastropoda, Muricidae) in the hyper-arid conditions of Northern Chile – implications for palaeoenvironmental reconstructions
Authors: Guzmán N. , Dauphin Y. , Cuif J. P. , Denis A. , Ortlieb L.
Published: April 2010

Abstract. Variations in the chemical composition of fossil biogenic carbonates, and in particular of mollusc shells, have been used in a range of palaeoenvironmental reconstructions. It is of primary importance, therefore, to detect and understand the diagenetic processes that may modify the original chemical signature. This microstructural and biogeochemical study focuses on modern and fossil (Holocene and Pleistocene) shells of a littoral gastropod of Northern Chile, and on the characterization of mineral component transformations at the nanometric scale and concomitant intracrystalline organic compound modifications. The inner aragonite layer of the shell exhibits more complex deteriorations than the calcite layer. This preliminary study confirms that physical and chemical alterations of various components of mollusc shell biocrystals are complex and might manifest in different ways even within a single individual. The single criterion of determining the mineralogical composition to verify the conservation state of shell samples is insufficient.
Measurement and modelling ozone fluxes over a cut and fertilized grassland
Authors: Mészáros R. , Horváth L. , Weidinger T. , Neftel A. , Nemitz E. , Dämmgen U. , Cellier P. , Loubet B.
Published: April 2010

Abstract. During the GRAMINAE Integrated Experiment between 20 May and 15 June 2000, the ozone flux was measured by the eddy covariance method above intensively managed grassland in Braunschweig, northern Germany. Three different phases of vegetation were covered during the measuring campaign: tall grass canopy before cut (29 May 2000), short grass after cut, and re-growing vegetation after fertilization (5 June 2000). Results show that beside weather conditions, the agricultural activities significantly influenced the O3 fluxes. After the cut the daytime average of the deposition velocity (vd) decreased from 0.44 cm s−1 to 0.26 cm s−1 and increased again to 0.32 cm s−1 during the third period. Detailed model calculations were carried out to estimate deposition velocity and ozone flux. The model captures the general diurnal patter of deposition, with vd daytime values of 0.52, 0.24, and 0.35 cm s−1 in the first, second and third period, respectively. Thus the model predicts a stronger response to the cut than the measurements, which is nevertheless smaller than expected on the basis of change in leaf area. The results show that both cut and fertilization have complex impacts on fluxes. Reduction of vegetation by cutting decreased the stomatal flux initially greatly, but the stomatal flux recovered to 80% of its original value within a week. At the same time, the non-stomatal flux appears to have increased directly after the cut, which the model partially explains by an increase in the deposition to the soil. A missing sink after the cut may be the chemical interaction with biogenic volatile organic compounds released after the cut and exposed senescent plant parts, or the increase in soil NO emissions after fertilization. Increased canopy temperatures may also have promoted ozone destruction on leaf surfaces. These results demonstrate the importance of canopy structure and non-stomatal pathways on O3 fluxes.
Carbon-nitrogen interactions regulate climate-carbon cycle feedbacks: results from an atmosphere-ocean general circulation model
Authors: Thornton P. E. , Doney S. C. , Lindsay K. , Moore J. K. , Mahowald N. , Randerson J. T. , Fung I. , Lamarque J.-F. , Feddema J. J. , Lee Y.-H.
Published: April 2010

Abstract. Inclusion of fundamental ecological interactions between carbon and nitrogen cycles in the land component of an atmosphere-ocean general circulation model (AOGCM) leads to decreased carbon uptake associated with CO2 fertilization, and increased carbon uptake associated with warming of the climate system. The balance of these two opposing effects is to reduce the fraction of anthropogenic CO2 predicted to be sequestered in land ecosystems. The primary mechanism responsible for increased land carbon storage under radiatively forced climate change is shown to be fertilization of plant growth by increased mineralization of nitrogen directly associated with increased decomposition of soil organic matter under a warming climate, which in this particular model results in a negative gain for the climate-carbon feedback. Estimates for the land and ocean sink fractions of recent anthropogenic emissions are individually within the range of observational estimates, but the combined land plus ocean sink fractions produce an airborne fraction which is too high compared to observations. This bias is likely due in part to an underestimation of the ocean sink fraction. Our results show a significant growth in the airborne fraction of anthropogenic CO2 emissions over the coming century, attributable in part to a steady decline in the ocean sink fraction. Comparison to experimental studies on the fate of radio-labeled nitrogen tracers in temperate forests indicates that the model representation of competition between plants and microbes for new mineral nitrogen resources is reasonable. Our results suggest a weaker dependence of net land carbon flux on soil moisture changes in tropical regions, and a stronger positive growth response to warming in those regions, than predicted by a similar AOGCM implemented without land carbon-nitrogen interactions. We expect that the between-model uncertainty in predictions of future atmospheric CO2 concentration and associated anthropogenic climate change will be reduced as additional climate models introduce carbon-nitrogen cycle interactions in their land components.
Measuring and modelling seasonal variation of gross nitrification rates in response to long-term fertilisation
Authors: Stange C. F. , Neue H.-U.
Published: April 2010

Abstract. The formation of nitrate (nitrification) in soils is an important process that influences N availability for plant uptake and potential N losses as well. Gross nitrification is an effective measure by which to test mechanistic ecosystem models for predictability because gross rates can widely differ between sites, even if net production is similar between these sites. A field experiment was designed to (i) determine gross nitrification rates in response to fertilisation and (ii) to verify the idea that seasonal variations of gross rates in soils can be readily predicted by soil moisture and soil temperature. Gross nitrification rates were measured by a Barometric Process Separation (BaPS). The BaPS measurements were validated with the commonly used 15N pool dilution technique measurements at six times. In general, the rates determined from both measurement approaches were in the same order of magnitude and showed a good correlation. The effects of 100 years of fertilisation (mineral fertiliser, manure and control) on gross nitrification rates were investigated. During 2004 soil samples from the long-term "static fertilisation experiment" at Bad Lauchstädt were sampled weekly and were measured in the laboratory under field conditions and subsequently under standardised conditions (16°C soil temperature and −30 kPa matrix potential) with the BaPS system. Gross nitrification rates determined under standardised conditions did not show any seasonal trend but did, however, reveal a high temporal variability. Gross nitrification rates determined by the BaPS-method under field conditions showed also a high temporal variability and ranged from 5 to 77 μg N h−1 kg−1 dry mass, 2 to 74 μg N h−1 kg−1 dry mass and 0 to 49 μg N h−1 kg−1 dry mass with respect to manure, mineral fertiliser, and control. The annual average was 0.34, 0.27 and 0.19 g N a−1 kg−1 dry mass for the manure site, mineral fertiliser site and control site, respectively. On all sites gross nitrification revealed a strong seasonal dynamic. Three different models were applied for reproducing the measured results. Test models could explain 75% to 78% of variability at the manure site, 66% to 77% of variability at the mineral fertiliser site, and 39% to 63% of variability at the control site. The model parameterisation shows that the temperature sensitivity of gross nitrification differs between the three neighbouring sites. Hence, a temperature response function in an ecosystem model has to consider the site specificity in order to adequately predict the effects of future climate change on the soil N cycle.
Impact of anthropogenic ocean acidification on thermal tolerance of the spider crab Hyas araneus
Authors: Walther K. , Sartoris F. J. , Bock C. , Pörtner H. O.
Published: April 2010

Abstract. Future scenarios for the oceans project combined developments of CO2 accumulation and global warming and their impact on marine ecosystems. The synergistic impact of both factors was addressed by studying the effect of elevated CO2 concentrations on thermal tolerance of the cold-eurythermal spider crab Hyas araneus from the population around Helgoland. Here ambient temperatures characterize the southernmost distribution limit of this species. Animals were exposed to present day normocapnia (380 ppm CO2), CO2 levels expected towards 2100 (710 ppm) and beyond (3000 ppm). Heart rate and haemolymph PO2 (PeO2) were measured during progressive short term cooling from 10 to 0°C and during warming from 10 to 25°C. An increase of PeO2 occurred during cooling, the highest values being reached at 0°C under all three CO2 levels. Heart rate increased during warming until a critical temperature (Tc) was reached. The putative Tc under normocapnia was presumably >25°C, from where it fell to 23.5°C under 710 ppm and then 21.1°C under 3000 ppm. At the same time, thermal sensitivity, as seen in the Q10 values of heart rate, rose with increasing CO2 concentration in the warmth. Our results suggest a narrowing of the thermal window of Hyas araneus under moderate increases in CO2 levels by exacerbation of the heat or cold induced oxygen and capacity limitation of thermal tolerance.
Using MODIS derived fPAR with ground based flux tower measurements to derive the light use efficiency for two Canadian peatlands
Authors: Connolly J. , Roulet N. T. , Seaquist J. W. , Holden N. M. , Lafleur P. M. , Humphreys E. R. , Heumann B. W. , Ward S. M.
Published: April 2010

Abstract. We used satellite remote sensing data; fraction of photosynthetically active radiation absorbed by vegetation (fPAR) from the Moderate Resolution Imaging Spectroradiometer (MODIS) in combination with tower eddy covariance and meteorological measurements to characterise the Light Use Efficiency parameter (ε) variability and the maximum ε (εmax) for two contrasting Canadian peatlands. Eight-day MODIS fPAR data were acquired for the Mer Bleue (2000 to 2003) and Western Peatland (2004). Flux tower eddy covariance and meteorological measurements were integrated to the same eight-day time stamps as the MODIS fPAR data. A light use efficiency model: GPP = ε×APAR (where GPP is Gross Primary Productivity and APAR is absorbed photosynthetically active radiation) was used to calculate ε. The εmax value for each year (2000 to 2003) at the Mer Bleue bog ranged from 0.58 g C MJ−1 to 0.78 g C MJ−1 and was 0.91 g C MJ−1 in 2004, for the Western Peatland. The average growing season ε for the Mer Bleue bog for the four year period was 0.35 g C MJ−1 and for the Western Peatland in 2004 was 0.57 g C MJ−1. The average snow free period for the Mer Bleue bog over the four years was 0.27 g C MJ−1 and for the Western Peatland in 2004 was 0.39 g C MJ−1. Using the light use efficiency method we calculated the εmax and the annual variability in ε for two Canadian peatlands. We determined that temperature was a growth-limiting factor at both sites Vapour Pressure Deficit (VPD) however was not. MODIS fPAR is a useful tool for the characterization of ε at flux tower sites.
Modelling regional scale surface fluxes, meteorology and CO2 mixing ratios for the Cabauw tower in the Netherlands
Authors: Tolk L. F. , Peters W. , Meesters A. G. C. A. , Groenendijk M. , Vermeulen A. T. , Steeneveld G. J. , Dolman A. J.
Published: April 2010

Abstract. We simulated meteorology and atmospheric CO2 transport over the Netherlands with the mesoscale model RAMS-Leaf3 coupled to the biospheric CO2 flux model 5PM. The results were compared with meteorological and CO2 observations, with emphasis on the tall tower of Cabauw. An analysis of the coupled exchange of energy, moisture and CO2 showed that the surface fluxes in the domain strongly influenced the atmospheric properties. The majority of the variability in the afternoon CO2 mixing ratio in the middle of the domain was determined by biospheric and fossil fuel CO2 fluxes in the limited area domain (640×640 km). Variation of the surface CO2 fluxes, reflecting the uncertainty of the parameters in the CO2 flux model 5PM, resulted in a range of simulated atmospheric CO2 mixing ratios of on average 11.7 ppm in the well-mixed boundary layer. Additionally, we found that observed surface energy fluxes and observed atmospheric temperature and moisture could not be reconciled with the simulations. Including this as an uncertainty in the simulation of surface energy fluxes changed simulated atmospheric vertical mixing and horizontal advection, leading to differences in simulated CO2 of on average 1.7 ppm. This is an important source of uncertainty and should be accounted for to avoid biased calculations of the CO2 mixing ratio, but it does not overwhelm the signal in the CO2 mixing ratio due to the uncertainty range of the surface CO2 fluxes.
Bioavailability of organically bound Fe to model phytoplankton of the Southern Ocean
Authors: Hassler C. S. , Schoemann V.
Published: April 2010

Abstract. Iron (Fe) is known to be mostly bound to organic ligands and to limit primary productivity in the Southern Ocean. It is thus important to investigate the bioavailability of organically bound Fe. In this study, we used four phytoplankton species of the Southern Ocean (Phaeocystis sp., Chaetoceros sp., Fragilariopsis kerguelensis and Thalassiosira antarctica Comber) to measure the influence of various organic ligands on Fe solubility and bioavailability. Short-term uptake Fe:C ratios were inversely related to the surface area to volume ratios of the phytoplankton. The ratio of extracellular to intracellular Fe is used to discuss the relative importance of diffusive supply and uptake to control Fe bioavailability. The effect of excess organic ligands on Fe bioavailability cannot be solely explained by their effect on Fe solubility. For most strains studied, the bioavailability of Fe can be enhanced relative to inorganic Fe in the presence of porphyrin, catecholate siderophore and saccharides whereas it was decreased in presence of hydroxamate siderophore and organic amine. For Thalassiosira, iron bioavailability was not affected by the presence of porphyrin, catecholate siderophore and saccharides. The enhancement of Fe bioavailability in presence of saccharides is presented as the result from both the formation of bioavailable (or chemically labile) organic form of Fe and the stabilisation of Fe within the dissolved phase. Given the ubiquitous presence of saccharides in the ocean, these compounds might represent an important factor to control the basal level of soluble and bioavailable Fe. Results show that the use of model phytoplankton is promising to improve mechanistic understanding of Fe bioavailability and primary productivity in HNLC regions of the ocean.
Estimates of fire emissions from an active deforestation region in the southern Amazon based on satellite data and biogeochemical modelling
Authors: van der Werf G. R. , Morton D. C. , DeFries R. S. , Giglio L. , Randerson J. T. , Collatz G. J. , Kasibhatla P. S.
Published: April 2010

Abstract. Tropical deforestation contributes to the build-up of atmospheric carbon dioxide in the atmosphere. Within the deforestation process, fire is frequently used to eliminate biomass in preparation for agricultural use. Quantifying these deforestation-induced fire emissions represents a challenge, and current estimates are only available at coarse spatial resolution with large uncertainty. Here we developed a biogeochemical model using remote sensing observations of plant productivity, fire activity, and deforestation rates to estimate emissions for the Brazilian state of Mato Grosso during 2001–2005. Our model of DEforestation CArbon Fluxes (DECAF) runs at 250-m spatial resolution with a monthly time step to capture spatial and temporal heterogeneity in fire dynamics in our study area within the ''arc of deforestation'', the southern and eastern fringe of the Amazon tropical forest where agricultural expansion is most concentrated. Fire emissions estimates from our modelling framework were on average 90 Tg C year−1, mostly stemming from fires associated with deforestation (74%) with smaller contributions from fires from conversions of Cerrado or pastures to cropland (19%) and pasture fires (7%). In terms of carbon dynamics, about 80% of the aboveground living biomass and litter was combusted when forests were converted to pasture, and 89% when converted to cropland because of the highly mechanized nature of the deforestation process in Mato Grosso. The trajectory of land use change from forest to other land uses often takes more than one year, and part of the biomass that was not burned in the dry season following deforestation burned in consecutive years. This led to a partial decoupling of annual deforestation rates and fire emissions, and lowered interannual variability in fire emissions. Interannual variability in the region was somewhat dampened as well because annual emissions from fires following deforestation and from maintenance fires did not covary, although the effect was small due to the minor contribution of maintenance fires. Our results demonstrate how the DECAF model can be used to model deforestation fire emissions at relatively high spatial and temporal resolutions. Detailed model output is suitable for policy applications concerned with annual emissions estimates distributed among post-clearing land uses and science applications in combination with atmospheric emissions modelling to provide constrained global deforestation fire emissions estimates. DECAF currently estimates emissions from fire; future efforts can incorporate other aspects of net carbon emissions from deforestation including soil respiration and regrowth.
Nitrous oxide production in boreal soils with variable organic matter content at low temperature – snow manipulation experiment
Authors: Maljanen M. , Virkajärvi P. , Hytönen J. , Öquist M. , Sparrman T. , Martikainen P. J.
Published: April 2010

Abstract. Agricultural soils are the most important sources for the greenhouse gas nitrous oxide (N2O), which is produced and emitted from soils also at low temperatures. The processes behind emissions at low temperatures are still poorly known. Snow is a good insulator and it keeps soil temperature rather constant. To simulate the effects of a reduction in snow depth on N2O emission in warming climate, snow pack was removed from experimental plots on three different agricultural soils (sand, mull, peat). Removal of snow lowered soil temperature and increased the extent and duration of soil frost in sand and mull soils. This led to enhanced N2O emissions during freezing and thawing events. The cumulative emissions during the first year when snow was removed over the whole winter were 0.25, 0.66 and 3.0 g N2O-N m−2 yr−1 in control plots of sand, mull and peat soils, respectively. In the treatment plots, without snow cover, the respective cumulative emissions were 0.37, 1.3 and 3.3 g N2O-N m−2 yr−1. Shorter snow manipulation during the second year did not increase the annual emissions. Only 20% of the N2O emission occurred during the growing season. Thus, these results highlight the importance of the winter season for this exchange and that the year-round measurements of annual N2O emissions from boreal soils are integral for estimating their N2O source strength. N2O accumulated in the frozen soil during winter and the soil N2O concentration correlated with the depth of frost but not with the winter N2O emission rates per se. Also laboratory incubations of soil samples showed high production rates of N2O at temperatures below 0°C, especially in the sand and peat soils.
Seasonal and mesoscale variability of oceanic transport of anthropogenic CO2
Authors: Lachkar Z. , Orr J. C. , Dutay J.-C.
Published: April 2010

Abstract. Estimates of the ocean's large-scale transport of anthropogenic CO2 are based on one-time hydrographic sections, but the temporal variability of this transport has not been investigated. The aim of this study is to evaluate how the seasonal and mesoscale variability affect data-based estimates of anthropogenic CO2 transport. To diagnose this variability, we made a global anthropogenic CO2 simulation using an eddy-permitting version of the coupled ocean sea-ice model ORCA-LIM. As for heat transport, the seasonally varying transport of anthropogenic CO2 is largest within 20° of the equator and shows secondary maxima in the subtropics. Ekman transport generally drives most of the seasonal variability, but the contribution of the vertical shear becomes important near the equator and in the Southern Ocean. Mesoscale variabilty contributes to the annual-mean transport of both heat and anthropogenic CO2 with strong poleward transport in the Southern Ocean and equatorward transport in the tropics. This "rectified" eddy transport is largely baroclinic in the tropics and barotropic in the Southern Ocean due to a larger contribution from standing eddies. Our analysis revealed that most previous hydrographic estimates of meridional transport of anthropogenic CO2 are severely biased because they neglect temporal fluctuations due to non-Ekman velocity variations. In each of the three major ocean basins, this bias is largest near the equator and in the high southern latitudes. In the subtropical North Atlantic, where most of the hydrographic-based estimates have been focused, this uncertainty represents up to 20% and 30% of total meridional transport of heat and CO2. Generally though, outside the tropics and Southern Ocean, there are only small variations in meridional transport due to seasonal variations in tracer fields and time variations in eddy transport. For the North Atlantic, eddy variability accounts for up to 10% and 15% of the total transport of heat and CO2. This component is not accounted for in coarse-resolution hydrographic surveys.
Drivers of inter-annual variability in Net Ecosystem Exchange in a semi-arid savanna ecosystem, South Africa
Authors: Archibald S. A. , Kirton A. , van der Merwe M. R. , Scholes R. J. , Williams C. A. , Hanan N.
Published: April 2010

Abstract. Inter-annual variability in primary production and ecosystem respiration was explored using eddy-covariance data at a semi-arid savanna site in the Kruger Park, South Africa. New methods of extrapolating night-time respiration to the entire day and filling gaps in eddy-covariance data in semi-arid systems were developed. Net ecosystem exchange (NEE) in these systems occurs as pulses associated with rainfall events, a pattern not well-represented in current standard gap-filling procedures developed primarily for temperate flux sites. They furthermore do not take into account the decrease in respiration at high soil temperatures. An artificial neural network (ANN) model incorporating these features predicted measured fluxes accurately (MAE 0.42 gC/m2/day), and was able to represent the seasonal patterns of photosynthesis and respiration at the site. The amount of green leaf area (indexed using satellite-derived estimates of fractional interception of photosynthetically active radiation fAPAR), and the timing and magnitude of rainfall events, were the two most important predictors used in the ANN model. These drivers were also identified by multiple linear regressions (MLR), with strong interactive effects. The annual integral of the filled NEE data was found to range from −138 to +155 g C/m2/y over the 5 year eddy covariance measurement period. When applied to a 25 year time series of meteorological data, the ANN model predicts an annual mean NEE of 75(±105) g C/m2/y. The main correlates of this inter-annual variability were found to be variation in the amount of absorbed photosynthetically active radiation (APAR), length of the growing season, and number of days in the year when moisture was available in the soil.
A method to detect soil carbon degradation during soil erosion
Authors: Alewell C. , Schaub M. , Conen F.
Published: April 2010

Abstract. Soil erosion has been discussed intensively but controversial both as a significant source or a significant sink of atmospheric carbon possibly explaining the gap in the global carbon budget. One of the major points of discussion has been whether or not carbon is degraded and mineralized to CO2 during detachment, transport and deposition of soil material. By combining the caesium-137 (137Cs) approach (quantification of erosion rates) with stable carbon isotope signatures (process indicator of mixing versus degradation of carbon pools) we were able to show that degradation of carbon occurs during soil erosion processes at the investigated mountain grasslands in the central Swiss Alps (Urseren Valley, Canton Uri). Transects from upland (erosion source) to wetland soils (erosion sinks) of sites affected by sheet and land slide erosion were sampled. Analysis of 137Cs yielded an input of 2 and 4.6 tha−1 yr−1 of soil material into the wetlands sites. Assuming no degradation of soil organic carbon during detachment and transport, carbon isotope signature of soil organic carbon in the wetlands could only be explained with an assumed 500–600 and 350–400 years of erosion input into the wetlands Laui and Spissen, respectively. The latter is highly unlikely with alpine peat growth rates indicating that the upper horizons might have an age between 7 and 200 years. While we do not conclude from our data that eroded soil organic carbon is generally degraded during detachment and transport, we propose this method to gain more information on process dynamics during soil erosion from oxic upland to anoxic wetland soils, sediments or water bodies.
Interpretation of benthic foraminiferal stable isotopes in subtidal estuarine environments
Authors: Diz P. , Jorissen F. J. , Reichart G. J. , Poulain C. , Dehairs F. , Leorri E. , Paulet Y.-M.
Published: April 2010

Abstract. Here we present a novel approach for the interpretation of stable isotope signatures recorded in benthic foraminifera from subtidal estuarine environments. The stable isotopic composition (δ18O and δ13C) of living Ammonia tepida and Haynesina germanica is examined at four stations in the Auray River estuary (Gulf of Morbihan, France) sampled in two contrasting seasons, spring 2006 and winter 2007. Comparing benthic foraminiferal δ18O measurements with theoretical oxygen isotopic equilibrium values, calculated on the basis of water temperature and salinity measurements in the upper and lower estuary, i.e., T-S-δ18Oeq. diagrams, strongly suggests that foraminiferal faunas sampled at the four stations calcified during different periods of the year. This interpretation can be refined by using the benthic foraminiferal δ13C, which is mainly determined by the mixing of sea and river water. In the upper estuary foraminifera mainly calcified in early spring and winter, whereas in the lower estuary calcification mainly took place in spring, summer and autumn. This new method provides insight into the complexity of estuarine benthic foraminiferal stable isotope records. In addition, it can also be used to obtain new information on preferred calcification periods of benthic foraminiferal taxa in different parts of the estuary.
Effects of increased pCO2 and temperature on trace element (Ag, Cd and Zn) bioaccumulation in the eggs of the common cuttlefish, Sepia officinalis
Authors: Lacoue-Labarthe T. , Martin S. , Oberhänsli F. , Teyssié J.-L. , Markich S. , Jeffree R. , Bustamante P.
Published: April 2010

Abstract. Cephalopods play a key role in many marine trophic networks and constitute alternative fisheries resources, especially given the ongoing decline in finfish stocks. Along the European coast, the eggs of the cuttlefish Sepia officinalis are characterized by an increasing permeability of the eggshell during development, which leads to selective accumulation of essential and non-essential elements in the embryo. Temperature and pH are two critical factors that affect the metabolism of marine organisms in the coastal shallow waters. In this study, we investigated the effects of pH and temperature through a crossed (3×2; pH 8.1 (pCO2, 400 ppm), 7.85 (900 ppm) and 7.6 (1400 ppm) at 16 and 19°C, respectively) laboratory experiment. Seawater pH showed a strong effect on the egg weight and non-significant impact on the weight of hatchlings at the end of development implying an egg swelling process and embryo growth disturbances. The lower the seawater pH, the more 110 mAg was accumulated in the tissues of hatchlings. The 109Cd concentration factor (CF) decreased with decreasing pH and 65Zn CF reached maximal values pH 7.85, independently of temperature. Our results suggest that pH and temperature affected both the permeability properties of the eggshell and embryonic metabolism. To the best of our knowledge, this is one of the first studies on the consequences of ocean acidification and ocean warming on metal uptake in marine organisms, and our results indicate the need to further evaluate the likely ecotoxicological impact of the global change on the early-life stages of the cuttlefish.
An integrated approach shows different use of water resources from Mediterranean maquis species in a coastal dune ecosystem
Authors: Mereu S. , Salvatori E. , Fusaro L. , Gerosa G. , Muys B. , Manes F.
Published: April 2010

Abstract. An integrated approach has been used to analyse the dependence of three Mediterranean species, A. unedo L., Q. ilex L., and P. latifolia L. co-occurring in a coastal dune ecosystem on two different water resources: groundwater and rainfed upper soil layers. The approach included leaf level gas exchanges, sap flow measurements and structural adaptations between 15 May and 31 July 2007. During this period it was possible to capture different species-specific response patterns to an environment characterized by a sandy soil, with a low water retention capacity, and the presence of a water table. The latter did not completely prevent the development of a drought response and, combined with previous studies in the same area, response differences between species have been partially attributed to different root distributions. Sap flow of A. unedo decreased rapidly with the decline of soil water content, while that of Q. ilex decreased only moderately. Midday leaf water potential of P. latifolia and A. unedo ranged between −2.2 and −2.7 MPa throughout the measuring period, while in Q. ilex it decreased down to −3.4 MPa at the end of the season. A. unedo was the only species that responded to drought with a decrease of its leaf area to sapwood area ratio from 23.9±1.2 (May) to 15.2±1.5 (July). While A. unedo also underwent an almost stepwise loss on hydraulic conductivity, such a loss did not occur for Q. ilex, whereas P. latifolia was able to slightly increase its hydraulic conducitivity. These differences show how different plant compartments coordinate differently between species in their responses to drought. The different responses appear to be mediated by different root distributions of the species and their relative resistances to drought are likely to depend on the duration of the periods in which water remains extractable in the upper soil layers.