bluuebunny/crossref_metadata_2025 huggingface dataset:
Visualizing Alzheimer’s Disease Mouse Brain with Multispectral Optoacoustic Tomography using a Fluorescent probe, CDnir7
Authors: Park Sung-Jin , Ho Chris Jun Hui , Arai Satoshi , Samanta Animesh , Olivo Malini , Chang Young-Tae
Published: August 2019

Alzheimer’s disease (AD) is now clinically considered as a chronic inflammation-based neurodegenerative disease. The CDnir7 probe was previously developed as an optical imaging probe to target macrophages in order to image mouse inflammation using in vivo optical imaging modalities such as In Vivo imaging system (IVIS) and fluorescent molecular tomography (FMT). Here, we demonstrate the application of CDnir7 in AD mouse brain imaging via multispectral optoacoustic tomography (MSOT). Longitudinal MSOT imaging of CDnir7 showed higher CDnir7 localization in AD mouse cerebral cortex compared to that of normal mice. MSOT signals of CDnir7 localization in mouse brain were verified by ex vivo near-infrared (NIR) imaging and immunohistochemistry. Histological evaluation showed strong CDnir7 staining in AD cerebral cortex, hippocampus, basal ganglia and thalamus area. Based on the supporting evidence, CDnir7 has great potential as a molecular imaging probe for AD brain imaging.
Evaluation of the role of STAP1 in Familial Hypercholesterolemia
Authors: Danyel Magdalena , Ott Claus-Eric , Grenkowitz Thomas , Salewsky Bastian , Hicks Andrew A. , Fuchsberger Christian , Steinhagen-Thiessen Elisabeth , Bobbert Thomas , Kassner Ursula , Demuth Ilja
Published: August 2019

Familial hypercholesterolemia (FH) is characterised by elevated serum levels of low-density lipoprotein cholesterol (LDL-C) and a substantial risk for cardiovascular disease. The autosomal-dominant FH is mostly caused by mutations in LDLR (low density lipoprotein receptor), APOB (apolipoprotein B), and PCSK9 (proprotein convertase subtilisin/kexin). Recently, STAP1 has been suggested as a fourth causative gene. We analyzed STAP1 in 75 hypercholesterolemic patients from Berlin, Germany, who are negative for mutations in canonical FH genes. In 10 patients with negative family history, we additionally screened for disease causing variants in LDLRAP1 (low density lipoprotein receptor adaptor protein 1), associated with autosomal-recessive hypercholesterolemia. We identified one STAP1 variant predicted to be disease causing. To evaluate association of serum lipid levels and STAP1 carrier status, we analyzed 20 individuals from a population based cohort, the Cooperative Health Research in South Tyrol (CHRIS) study, carrying rare STAP1 variants. Out of the same cohort we randomly selected 100 non-carriers as control. In the Berlin FH cohort STAP1 variants were rare. In the CHRIS cohort, we obtained no statistically significant differences between carriers and non-carriers of STAP1 variants with respect to lipid traits. Until such an association has been verified in more individuals with genetic variants in STAP1, we cannot estimate whether STAP1 generally is a causative gene for FH.
Reduced multisensory facilitation in adolescents and adults on the Autism Spectrum
Authors: Ostrolenk Alexia , Bao Vanessa A. , Mottron Laurent , Collignon Olivier , Bertone Armando
Published: August 2019

Individuals with autism are reported to integrate information from visual and auditory channels in an idiosyncratic way. Multisensory integration (MSI) of simple, non-social stimuli (i.e., flashes and beeps) was evaluated in adolescents and adults with (n = 20) and without autism (n = 19) using a reaction time (RT) paradigm using audio, visual, and audiovisual stimuli. For each participant, the race model analysis compares the RTs on the audiovisual condition to a bound value computed from the unimodal RTs that reflects the effect of redundancy. If the actual audiovisual RTs are significantly faster than this bound, the race model is violated, indicating evidence of MSI. Our results show that the race model violation occurred only for the typically-developing (TD) group. While the TD group shows evidence of MSI, the autism group does not. These results suggest that multisensory integration of simple information, void of social content or complexity, is altered in autism. Individuals with autism may not benefit from the advantage conferred by multisensory stimulation to the same extent as TD individuals. Altered MSI for simple, non-social information may have cascading effects on more complex perceptual processes related to language and behaviour in autism.
The endosomal sorting adaptor HD-PTP is required for ephrin-B:EphB signalling in cellular collapse and spinal motor axon guidance
Authors: Lahaie Sylvie , Morales Daniel , Bagci Halil , Hamoud Noumeira , Castonguay Charles-Etienne , Kazan Jalal M. , Desrochers Guillaume , Klar Avihu , Gingras Anne-Claude , Pause Arnim , Côté Jean-François , Kania Artur
Published: August 2019

The signalling output of many transmembrane receptors that mediate cell-cell communication is restricted by the endosomal sorting complex required for transport (ESCRT), but the impact of this machinery on Eph tyrosine kinase receptor function is unknown. We identified the ESCRT-associated adaptor protein HD-PTP as part of an EphB2 proximity-dependent biotin identification (BioID) interactome, and confirmed this association using co-immunoprecipitation. HD-PTP loss attenuates the ephrin-B2:EphB2 signalling-induced collapse of cultured cells and axonal growth cones, and results in aberrant guidance of chick spinal motor neuron axons in vivo. HD-PTP depletion abrogates ephrin-B2-induced EphB2 clustering, and EphB2 and Src family kinase activation. HD-PTP loss also accelerates ligand-induced EphB2 degradation, contrasting the effects of HD-PTP loss on the relay of signals from other cell surface receptors. Our results link Eph function to the ESCRT machinery and demonstrate a role for HD-PTP in the earliest steps of ephrin-B:EphB signalling, as well as in obstructing premature receptor depletion.
Exactly solvable model of two interacting Rydberg-dressed atoms confined in a two-dimensional harmonic trap
Authors: Kościk Przemysław , Sowiński Tomasz
Published: August 2019

Exactly solvable model of two Rydberg-dressed atoms moving in a quasi-two-dimensional harmonic trap is introduced and its properties are investigated. Depending on the strength of inter-particle interactions and the critical range of the potential, the two-particle eigenstates are classified with respect to the excitations of the center-of-mass motion, relative angular momentum, and relative distance variable. Having these solutions in hand, we discuss inter-particle correlations as functions of interaction parameters. We also present a straightforward prescription of how to generalize obtained solutions to higher dimensions.
Resolution enhancement in scanning electron microscopy using deep learning
Authors: de Haan Kevin , Ballard Zachary S. , Rivenson Yair , Wu Yichen , Ozcan Aydogan
Published: August 2019

We report resolution enhancement in scanning electron microscopy (SEM) images using a generative adversarial network. We demonstrate the veracity of this deep learning-based super-resolution technique by inferring unresolved features in low-resolution SEM images and comparing them with the accurately co-registered high-resolution SEM images of the same samples. Through spatial frequency analysis, we also report that our method generates images with frequency spectra matching higher resolution SEM images of the same fields-of-view. By using this technique, higher resolution SEM images can be taken faster, while also reducing both electron charging and damage to the samples.
An emerging trend of rapid increase of leukemia but not all cancers in the aging population in the United States
Authors: Hao Taisen , Li-Talley Min , Buck Alison , Chen WenYong
Published: August 2019

The “baby boomers” born in 1946–1964 in the United States (U.S.) started to reach the age of 65 in 2011, rapidly accelerating U.S. population aging. There are great public concerns about its impact on health care with anticipation of rising cancer incidences. We examined the incidences and deaths of leukemia and overall cancer in the U.S. from 1998 to 2018. The acute myeloid leukemia (AML) and chronic myeloid leukemia (CML) incidences remained constant prior to 2011 but have climbed up substantially since then, and the chronic lymphocytic leukemia (CLL) incidence has increased continuously since 1998. The significant increase of myeloid leukemia and CLL incidences was strongly correlated with the U.S. population aging. The incidence of all cancers was increased in correlation with a small increase in aging population prior to 2011, but surprisingly has changed marginally since 2011, which was not significantly correlated with the accelerated population aging. We observed the most substantial decline of deaths with CML, whereas AML deaths continued to rise in the past 20 years. In conclusion, the overall cancer incidence was not increased as fast as previously feared with aging Americans; however, the incidences of myeloid leukemia and CLL significantly outpaced that of all cancers.
De-epithelialization of porcine tracheal allografts as an approach for tracheal tissue engineering
Authors: Aoki Fabio G. , Varma Ratna , Marin-Araujo Alba E. , Lee Hankyu , Soleas John P. , Li Alexander H. , Soon Kayla , Romero David , Moriya Henrique T. , Haykal Siba , Amon Cristina , Waddell Thomas K. , Karoubi Golnaz
Published: August 2019

Replacement of large tracheal defects remains an unmet clinical need. While recellularization of acellular tracheal grafts appeared to be a viable pathway, evidence from the clinic suggests otherwise. In hindsight, complete removal of chondrocytes and repopulation of the tracheal chondroid matrix to achieve functional tracheal cartilage may have been unrealistic. In contrast, the concept of a hybrid graft whereby the epithelium is removed and the immune-privileged cartilage is preserved is a radically different path with initial reports indicating potential clinical success. Here, we present a novel approach using a double-chamber bioreactor to de-epithelialize tracheal grafts and subsequently repopulate the grafts with exogenous cells. A 3 h treatment with sodium dodecyl sulfate perfused through the inner chamber efficiently removes the majority of the tracheal epithelium while the outer chamber, perfused with growth media, keeps most (68.6 ± 7.3%) of the chondrocyte population viable. De-epithelialized grafts support human bronchial epithelial cell (BEAS-2B) attachment, viability and growth over 7 days. While not without limitations, our approach suggests value in the ultimate use of a chimeric allograft with intact donor cartilage re-epithelialized with recipient-derived epithelium. By adopting a brief and partial decellularization approach, specifically removing the epithelium, we avoid the need for cartilage regeneration.
A novel bispecific antibody platform to direct complement activity for efficient lysis of target cells
Authors: Cruz Jonathan W. , Damko Ermelinda , Modi Bhavika , Tu Naxin , Meagher Karoline , Voronina Vera , Gartner Hans , Ehrlich George , Rafique Ashique , Babb Robert , Aneja Priya , Potocky Terra B. , D’ Orvilliers Amanda , Coppi Alida , E Sook Yen , Qiu Haibo , Williams Courtney M. , Bennett Brandy L. , Chen Gang , Macdonald Lynn , Olson William , Lin John C. , Stahl Neil , Murphy Andrew J. , Kyratsous Christos A. , Prasad Brinda C.
Published: August 2019

Harnessing complement-mediated cytotoxicity by therapeutic antibodies has been limited because of dependency on size and density of antigen, structural constraints resulting from orientation of antibody binding, and blockade of complement activation by inhibitors expressed on target cells. We developed a modular bispecific antibody platform that directs the complement-initiating protein C1q to target cells, increases local complement deposition and induces cytotoxicity against target antigens with a wide-range of expression. The broad utility of this approach to eliminate both prokaryotic and eukaryotic cells was demonstrated by pairing a unique C1q-recruiting arm with multiple targeting arms specific forStaphylococcus aureus,Pseudomonas aeruginosa, B-cells and T-cells, indicating applicability for diverse indications ranging from infectious diseases to cancer. Generation of C1q humanized mice allowed for demonstration of the efficacy of this approach to clear disease-inducing cellsin vivo. In summary, we present a novel, broadly applicable, and versatile therapeutic modality for targeted cell depletion.
Bounded Asymmetry in Road Networks
Authors: Martínez Mori Juan C. , Samaranayake Samitha
Published: August 2019

Road networks are a classical stage for applications in network science and graph theory. Meanwhile, many combinatorial problems that arise in road networks are computationally intractable. Thus, an attractive way of tackling them is through efficient heuristics with provable performance guarantees, better known as approximation algorithms. This motivates the intersection of algorithm design with the aforementioned fields. Specifically, identifying measures that characterize graphs and exploiting them in the design of algorithms may yield practical heuristics with rigorous mathematical justification. Herein, we propose a new graph measure, namely the asymmetry factor ΔG of a directed graph G, with immediate algorithmic results via a symmetrization procedure and the black box use of approximation algorithms for symmetric graphs. Crucially, we analyze the asymmetry factors of the road networks from a diverse set of twelve cities, providing empirical evidence that road networks exhibit low bounded asymmetry and thereby justifying the practical use of algorithms for symmetric graphs.
Isolation-by-environment as a driver of genetic differentiation among populations of the only broad-leaved evergreen shrub Ammopiptanthus mongolicus in Asian temperate deserts
Authors: Jiang Shan , Luo Min-Xin , Gao Run-Hong , Zhang Wei , Yang Yong-Zhi , Li Ying-Jie , Liao Pei-Chun
Published: August 2019

Whether the effect of migration-selection-drift equilibrium on population structure is governed by spatial or environmental differences is usually elucidated by isolation-by-distance (IBD), isolation-by-environment (IBE), and isolation-by-resistance (IBR) tests. The population structure of Ammopiptanthus mongolicus, a broad-leaved evergreen psammophyte in eastern Central Asia, was previously thought to follow an isolation by distance pattern. However, recent studies have emphasized the effects of environmental factors on its growth and distribution, suggesting an important influence of local adaptation on the genetic structure of the species. Using inter-simple sequence repeat (ISSR) markers, we verified the previously inferred low intra-population variation and high inter-population differentiation. However, in contrast to previous studies, the results of partial Mantel tests and a maximum likelihood population effects mixed model (MLPE) suggested that local climate differences, rather than geographic distances or resistance distances, are the main factor affecting population differentiation. Further analysis with removal of multicollinear climatic variables and univariate MLPE found that summer and winter precipitation were crucial for shaping the current population genetic structure. Since local precipitation is related to the regeneration, colonization, and overwintering survival of A. mongolicus, its influence on demographic change may explain its effect on the population genetic structure. In addition, precipitation is related to terrain despite westward decreases, which explains the independence of genetic difference and geographic distance. The identified role of IBE suggests that collecting germplasm resources from genetically differentiated populations could be a more effective strategy to preserve the overall genetic diversity of the species than the establishment of corridors to enhance gene flow among populations.
Fabrication of innocuous gold nanoparticles using plant cells in culture
Authors: Bhaskaran Sinilal , Sharma Nilesh , Tiwari Pooja , Singh Shree R. , Sahi Shivendra V.
Published: August 2019

Plant extracts and their different growth phases have been manipulated for the fabrication of nanomaterials, which can be an eco-friendly alternative to the chemical methods that produce hazardous by-products. However, practical difficulties in isolation of the nanoparticles obtained through biological methods and the scanty control that these methods allow over their shapes and sizes impose limitations in their utility. For the first time, we report here a versatile system using cell suspension culture of Medicago sativa, which ensures control over the reaction to regulate size of the particles as well as their easier recovery afterwards. Isolated nanoparticles were characterized for their shape, size and functions. The particles varied in shapes from isodiametric spheres to exotic tetrahedrons, pentagons and pentagonal prisms. They clearly demonstrated catalytic activity in the reduction reaction of methylene blue by stannous chloride. Interestingly, the cell culture-derived particles were found less cytotoxic to healthy human cell line HEp-2 while more cytotoxic to the cancer cell line 4T-1 in comparison to those synthesized through citrate method. However, when administered in mice, these nanoparticles elicited similar inflammatory responses as those produced by chemically synthesized counterparts. These results envisage the utility of these particles for various biological applications.
Non-parametric combination analysis of multiple data types enables detection of novel regulatory mechanisms in T cells of multiple sclerosis patients
Authors: Fernandes Sunjay Jude , Morikawa Hiromasa , Ewing Ewoud , Ruhrmann Sabrina , Joshi Rubin Narayan , Lagani Vincenzo , Karathanasis Nestoras , Khademi Mohsen , Planell Nuria , Schmidt Angelika , Tsamardinos Ioannis , Olsson Tomas , Piehl Fredrik , Kockum Ingrid , Jagodic Maja , Tegnér Jesper , Gomez-Cabrero David
Published: August 2019

Multiple Sclerosis (MS) is an autoimmune disease of the central nervous system with prominent neurodegenerative components. The triggering and progression of MS is associated with transcriptional and epigenetic alterations in several tissues, including peripheral blood. The combined influence of transcriptional and epigenetic changes associated with MS has not been assessed in the same individuals. Here we generated paired transcriptomic (RNA-seq) and DNA methylation (Illumina 450 K array) profiles of CD4+ and CD8+ T cells (CD4, CD8), using clinically accessible blood from healthy donors and MS patients in the initial relapsing-remitting and subsequent secondary-progressive stage. By integrating the output of a differential expression test with a permutation-based non-parametric combination methodology, we identified 149 differentially expressed (DE) genes in both CD4 and CD8 cells collected from MS patients. Moreover, by leveraging the methylation-dependent regulation of gene expression, we identified the gene SH3YL1, which displayed significant correlated expression and methylation changes in MS patients. Importantly, silencing of SH3YL1 in primary human CD4 cells demonstrated its influence on T cell activation. Collectively, our strategy based on paired sampling of several cell-types provides a novel approach to increase sensitivity for identifying shared mechanisms altered in CD4 and CD8 cells of relevance in MS in small sized clinical materials.
Coupled Ionic-Electronic Equivalent Circuit to Describe Asymmetric Rise and Decay of Photovoltage Profile in Perovskite Solar Cells
Authors: Ebadi Firouzeh , Aryanpour Masoud , Mohammadpour Raheleh , Taghavinia Nima
Published: August 2019

In this research, we employed transient photo-voltage rise and decay measurements to investigate the origin of slow unsymmetrical rise and decay profiles in single and triple cation perovskite solar cells. Drastic changes in photo-voltage decay profile were observed upon insertion of Br−, Cs+ and FA+ ions into perovskite structures. In order to explain our observations, the activation energy for ionic defects was measured and an equivalent circuit model was proposed containing both electrical and ionic components. The electrical branch consists of a diode, the bulk capacitance and resistances for charge transport and recombination. In parallel we introduced an ionic branch describing the ionic response by a resistance for ionic charge transport and a capacitance describing ion accumulation at the interface to the charge transport layer. To reproduce the asymmetry of photo-voltage rise and decay, a diode with a parallel resistor is introduced leading to a belayed backflow of the accumulated ions. The results revealed that the activation energy of ionic defects became larger upon insertion of either halides or cations. There is larger amount of ionic defects in the case of MAPbI3 while the de-accumulation process of ions happens in much larger time scale in triple cation perovskite. The presence of ions at the interfaces results in band bending generating a potential barrier restraining electrons and holes from recombination; so the loss of built-in potential is delayed until de-accumulation of ionic double layer happens. Our model proposes that the loss of built-in potential depends on electrostatic potential drop, suggesting coupled electronic-ionic phenomenon in perovskite solar cells.
An Innovative Harmonic Radar to Track Flying Insects: the Case of Vespa velutina
Authors: Maggiora Riccardo , Saccani Maurice , Milanesio Daniele , Porporato Marco
Published: August 2019

Over the last 30 years, harmonic radars have been effective only in tracking insects flying at low altitude and over flat terrain. We developed an innovative harmonic radar, implementing the most advanced radar techniques, which covers a large field of view in elevation (with an angular aperture of about 24°) and can track insects up to a range of 500 m. We show all the components of this new harmonic radar and its first application, the tracking of Vespa velutina (yellow-legged Asian hornet). This is an invasive species which, although indigenous to South-East Asia, is spreading quickly to other regions of the world. Because of its fast diffusion and the serious threat it poses to both honeybee colonies and to humans, control measures are mandatory. When equipped with a small passive transponder, this radar system can track the flight trajectory of insects and locate nests to be destroyed. This tool has potential not only for monitoring V. velutina but also for tracking other larger insects and small size vertebrates.
Biotic Versus Abiotic Control of Primary Production Identified in a Common Garden Experiment
Authors: Belovsky Gary E. , Slade Jennifer B.
Published: August 2019

Understanding drivers of ecosystem primary production is a foundational question in ecology that grows in importance with anthropogenic stresses (e.g., climate change). Traditionally, ecosystem production is considered to be abiotically controlled at large spatial scales (e.g., precipitation, temperature, etc.), which underlies forecasting climate change impacts. Using a “common garden” experiment over 10 years at two sites with the same plant and grasshopper species, we show that primary production is strongly influenced by biotic factors (herbivory and plant adaptations to it) at finer spatial scales by creating positive feedbacks, which reverse relative productivity of ecosystems expected from abiotic conditions alone. Our results without herbivory indicate that one site has 26% less annual net primary production (ANPP) than the other site. With herbivory, the sites reverse in ANPP, so the site with lower ANPP without herbivory now is 15% greater than the site with higher ANPP without herbivory, as they respectively increase by 6% and decline by 33%. This reversal is due to changing nitrogen availability (N), as N becomes 16% greater at the higher ANPP site with herbivory, respectively a 3% increase and 41% decline in N. The ANPP and N changes are observed, even though the sites are a few kilometers apart and have the same grasshopper and plant species.
Whole-body cryotherapy does not augment adaptations to high-intensity interval training
Authors: Broatch James R. , Poignard Mathilde , Hausswirth Christophe , Bishop David J. , Bieuzen François
Published: August 2019

The aim of this study was to investigate the effects of regular post-exercise whole-body cryotherapy (WBC) on physiological and performance adaptations to high-intensity interval training (HIT). In a two-group parallel design, twenty-two well-trained males performed four weeks of cycling HIT, with each session immediately followed by 3 min of WBC (−110 °C) or a passive control (CON). To assess the effects of WBC on the adaptive response to HIT, participants performed the following cycling tests before and after the training period; a graded exercise test (GXT), a time-to-exhaustion test (Tmax), a 20-km time trial (20TT), and a 120-min submaximal test (SM120). Blood samples were taken before and after training to measure changes in basal adrenal hormones (adrenaline, noradrenaline, and cortisol). Sleep patterns were also assessed during training via wrist actigraphy. As compared with CON, the administration of WBC after each training session during four weeks of HIT had no effect on peak oxygen uptake ($$\dot{{\rm{V}}}$$

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O2peak) and peak aerobic power (Ppeak) achieved during the GXT, Tmax duration and work performed (WTmax), 20TT performance, substrate oxidation during the SM120, basal adrenaline/noradrenaline/cortisol concentrations, or sleep patterns (P > 0.05). These findings suggest that regular post-exercise WBC is not an effective strategy to augment training-induced aerobic adaptations to four weeks of HIT.
Organic contaminants as an ecological tool to explore niche partitioning: a case study using three pelagic shark species
Authors: Lyons Kady , Kacev Dovi , Preti Antonella , Gillett David , Dewar Heidi
Published: August 2019

Chemical contaminant profiles are linked to an animal’s niche, providing a potential tool by which to assess resource partitioning in pelagic species. As proof of concept, we examined contaminant signatures in three species of sharks (Isurus oxyrinchus, Prionace glauca, and Alopias vulpinus) known to overlap in both space and time. Since these sharks comprise a predatory guild within the Southern California Bight (SCB), we predicted that species may partition spatial and dietary resources to limit the extent of competitive exclusion. Indeed, species were distinguishable by both total contaminant loads and their contaminant fingerprint, as random forest analysis found that species could be correctly classified 96% of the time. Our results demonstrate the utility of chemical analyses for ecological studies, and how contaminant tracers can be used in combination with traditional methods to elucidate how species may undergo niche partitioning to reduce competition for overlapping resources within predatory guilds.
Burst statistics in an early biofilm quorum sensing model: the role of spatial colony-growth heterogeneity
Authors: Kindler Oliver , Pulkkinen Otto , Cherstvy Andrey G. , Metzler Ralf
Published: August 2019

Quorum-sensing bacteria in a growing colony of cells send out signalling molecules (so-called “autoinducers”) and themselves sense the autoinducer concentration in their vicinity. Once—due to increased local cell density inside a “cluster” of the growing colony—the concentration of autoinducers exceeds a threshold value, cells in this clusters get “induced” into a communal, multi-cell biofilm-forming mode in a cluster-wide burst event. We analyse quantitatively the influence of spatial disorder, the local heterogeneity of the spatial distribution of cells in the colony, and additional physical parameters such as the autoinducer signal range on the induction dynamics of the cell colony. Spatial inhomogeneity with higher local cell concentrations in clusters leads to earlier but more localised induction events, while homogeneous distributions lead to comparatively delayed but more concerted induction of the cell colony, and, thus, a behaviour close to the mean-field dynamics. We quantify the induction dynamics with quantifiers such as the time series of induction events and burst sizes, the grouping into induction families, and the mean autoinducer concentration levels. Consequences for different scenarios of biofilm growth are discussed, providing possible cues for biofilm control in both health care and biotechnology.
Eight new freshwater mussels (Unionidae) from tropical Asia
Authors: Bolotov Ivan N. , Konopleva Ekaterina S. , Vikhrev Ilya V. , Lopes-Lima Manuel , Bogan Arthur E. , Lunn Zau , Chan Nyein , Win Than , Aksenova Olga V. , Gofarov Mikhail Yu , Tomilova Alena A. , Kondakov Alexander V.
Published: August 2019

Freshwater mussels are sensitive to habitat and water quality, revealing the fastest rates of human-mediated global extinction among aquatic animals. These animals are especially diverse in tropical Asia, the faunas of which are characterized by high levels of endemism. Here we describe four new species and four new subspecies of freshwater mussels from Myanmar. Leoparreysia whittenisp. nov., the smallest representative of this genus, was discovered from the Ayeyarwady and Chindwin rivers. Radiatula myitthanensissp. nov. and R. chindwinensissp. nov. were recorded from the Chindwin Basin, and R. mouhoti haungthayawensisssp. nov. has been discovered from the Haungthayaw River. Indochinella pugio has been revised with a description of three subspecies: I. pugio viridissimassp. nov. from the Sittaung, Bilin and Bago rivers, I. pugio daweiensisssp. nov. from the Dawei River, and I. pugio paradoxassp. nov. from the Haungthayaw River. Yaukthwa elongatulasp. nov., a peculiar species, conchologically resembling representatives of the genus Solenaia (Gonideinae) with ultra-elongated shell was found in the Chindwin Basin. Our records highlight that tropical Asia harbors numerous, but still overlooked local endemic lineages of freshwater bivalves, which may be on the brink of extinction due to the high anthropogenic and climate change impacts.
Postoperative bleeding and biliary leak after liver resection: A cohort study between two different fibrin sealant patches
Authors: López-Guerra Diego , Santos-Naharro Jesús , Rojas-Holguín Adela , Jaen-Torrejimeno Isabel , Prada-Villaverde Aranzazu , Blanco-Fernández Gerardo
Published: August 2019

Different topical products have been tested in liver resection to get a control of bleeding. This study compares the effectiveness and complications between two haemostatic agents Tachosil versus Hemopatch. A cohort study including patients who underwent liver resection since November 2014 to April 2016 was conducted. The study was performed in a single institution. Demographic variables, intraoperative characteristics and postoperative complications were analysed. A total of 92 patients (50 in Tachosil group and 42 in Hemopatch group) were included. No differences were found in patients who required intraoperative (Tachosil 6 (12%) vs Hemopatch 2 (4.8%); p = 0.28) and postoperative (Tachosil 4 (8%) vs Hemopatch 3 (7.1%); p = 0.87) blood transfusion. There were no differences in length of hospital stay (Tachosil 7.02 ± 4.1 days vs Hemopatch 7.63 ± 9.1; p = 0.67). Overall postoperative complications were similar between both patches (Tachosil 21 (42%) vs Hemopatch 14 (33%); p = 0.48). No differences were found in specific complications, however Hemopatch showed a higher incidence of intraabdominal abscess 5 (11.9%) and vs 0 (0%) p = 0.01.In this study no differences have been found between Hemopatch and Tachosil in the effectiveness and overall postoperative complication after liver resection, although Hemopatch shows a higher incidence of intraabdominal abscess. Further studies are necessary to confirm these findings.
A comprehensive computational study of amino acid interactions in membrane proteins
Authors: Mbaye Mame Ndew , Hou Qingzhen , Basu Sankar , Teheux Fabian , Pucci Fabrizio , Rooman Marianne
Published: August 2019

Transmembrane proteins play a fundamental role in a wide series of biological processes but, despite their importance, they are less studied than globular proteins, essentially because their embedding in lipid membranes hampers their experimental characterization. In this paper, we improved our understanding of their structural stability through the development of new knowledge-based energy functions describing amino acid pair interactions that prevail in the transmembrane and extramembrane regions of membrane proteins. The comparison of these potentials and those derived from globular proteins yields an objective view of the relative strength of amino acid interactions in the different protein environments, and their role in protein stabilization. Separate potentials were also derived from α-helical and β-barrel transmembrane regions to investigate possible dissimilarities. We found that, in extramembrane regions, hydrophobic residues are less frequent but interactions between aromatic and aliphatic amino acids as well as aromatic-sulfur interactions contribute more to stability. In transmembrane regions, polar residues are less abundant but interactions between residues of equal or opposite charges or non-charged polar residues as well as anion-π interactions appear stronger. This shows indirectly the preference of the water and lipid molecules to interact with polar and hydrophobic residues, respectively. We applied these new energy functions to predict whether a residue is located in the trans- or extramembrane region, and obtained an AUC score of 83% in cross validation, which demonstrates their accuracy. As their application is, moreover, extremely fast, they are optimal instruments for membrane protein design and large-scale investigations of membrane protein stability.
Factors affecting dural sinus density in non-contrast computed tomography of brain
Authors: Akhavan Reza , Abbasi Bita , Kheirollahi Moein , Ghamari Khameneh Afshar , Hashemi Jahanbakhsh , Khoei Samin , Darban Hosseini Amirkhiz Gisoo
Published: August 2019

The possibility of changing the intracranial vasculature computed tomography (CT) attenuation under the influence of variable factors is a long-held unestablished belief. The purpose of this study is to evaluate factors affecting dural sinus density in non-contrast computed tomography of the brain. Patients presented with acute neurologic symptoms to the emergency department were candidates to be enrolled in this study. A region of interest (ROI) measuring 1–2-mm2 recorder (base on sinus size) used to measure the attenuation of each sinus in Hounsfield Unit (HU) and then mean density calculated. CBC, BUN and Cr were extracted from patients’ records. Chi-square test, correlation analyze, independent sample unpaired student t-test and one-way ANOVA test and Multivariate logistic regression were used. Positive significant correlation (0.48) was found between the hematocrit level (HCT) and average attenuation in the four sinus segments (P value < 0.0001) and between the HCT and basilar artery attenuation (P value < 0.0001). There was no significant correlation between the age and average attenuation. There was a significant and negative correlation between the BUN/Cr and average attenuation. Using a multivariate analysis on a large sample volume, we conclude that Hgb and HCT are the only factors that have a significant correlation with average sinus attenuation. This correlation is relatively stronger for Hgb in comparison to HCT.
Calcium carbonate alters the functional response of coastal sediments to eutrophication-induced acidification
Authors: Drylie Tarn P. , Needham Hazel R. , Lohrer Andrew M. , Hartland Adam , Pilditch Conrad A.
Published: August 2019

Coastal ocean acidification research is dominated by laboratory-based studies that cannot necessarily predict real-world ecosystem response given its complexity. We enriched coastal sediments with increasing quantities of organic matter in the field to identify the effects of eutrophication-induced acidification on benthic structure and function, and assess whether biogenic calcium carbonate (CaCO3) would alter the response. Along the eutrophication gradient we observed declines in macrofauna biodiversity and impaired benthic net primary productivity and sediment nutrient cycling. CaCO3 addition did not alter the macrofauna community response, but significantly dampened negative effects on function (e.g. net autotrophy occurred at higher levels of organic matter enrichment in +CaCO3 treatments than −CaCO3 (1400 vs 950 g dw m−2)). By identifying the links between eutrophication, sediment biogeochemistry and benthic ecosystem structure and function in situ, our study represents a crucial step forward in understanding the ecological effects of coastal acidification and the role of biogenic CaCO3 in moderating responses.
A TLR–CXCL1 pathway in DRG neurons induces neutrophil accumulation in the DRG and mechanical allodynia in EAE mice
Authors: Zhang Jing , Harada Yuka , Hayashi Yoshinori
Published: August 2019

Multiple sclerosis (MS) is a potentially disabling disease of the central nervous system. Approximately half of the patients with MS experience severe pain; however, currently available therapeutics provide only insufficient relief. The mechanisms underlying the generation of neuropathic pain in patients with MS are not fully understood. Recently, we found that neutrophil elastase from accumulated neutrophils in the dorsal root ganglion (DRG) sensitizes DRG neurons and induces mechanical allodynia in a mouse model of experimental autoimmune encephalomyelitis (EAE). However, the mechanism underlying neutrophil accumulation in the DRG after myelin oligodendrocyte glycoprotein (MOG35–55, immunogenic peptide) immunization remains unclear. Here, we found that C-X-C motif ligand 1 (CXCL1) was upregulated in DRG neurons after MOG35–55immunization. Increased expression of CXCL1 protein was also observed in primary cultured DRG neurons treated with MOG35–55, which was mediated through toll-like receptor 4 (TLR4). Gene silencing of TLR4 or CXCL1 in DRG neurons significantly attenuated neutrophil accumulation in the DRG and mechanical allodynia during the preclinical phase of EAE (around day 5 after immunization). Our results thus suggest that a TLR4–CXCL1 pathway in DRG neurons triggers neutrophil recruitment in the DRG and subsequent mechanical allodynia in response to MOG35–55.
Wind speed acceleration around a single low solid roughness in atmospheric boundary layer
Authors: Fu Lin-Tao , Fan Qing , Huang Zong-Liu
Published: August 2019

Air flow around vegetation is crucial for particle transport (e.g., dust grains, seeds and pollens) in atmospheric boundary layer. However, wind acceleration around vegetation is still not well understood. In this work, air flow around a single low solid roughness element (representing a dense shrub patch or clump) in atmospheric boundary layer was numerically investigated, with emphasizing wind acceleration zone located at the two lateral sides. The maximum value of dimensionless horizontal wind speed as well as its location of occurrence and the geometrical morphology and area of wind acceleration zone were systematically studied. It reveals that they could alter significantly with the change of roughness basal shape. The maximum value of dimensionless resultant horizontal speed decreases monotonously with observation height, while the area of wind acceleration zone shows a non-linear response to observation height. The dependence of the maximum speed location on observation height is generally weak, but may vary with roughness basal shape. These findings could well explain the disagreement among previous field observations. We hope that these findings could be helpful to improve our understanding of aeolian transport in sparsely vegetated land in arid and semi-arid region, and wind dispersals of seeds and pollens from shrub vegetation.
Gastrointestinal adverse effects of nintedanib and the associated risk factors in patients with idiopathic pulmonary fibrosis
Authors: Kato Motoyasu , Sasaki Shinichi , Nakamura Takahiro , Kurokawa Kana , Yamada Tomoko , Ochi Yusuke , Ihara Hiroaki , Takahashi Fumiyuki , Takahashi Kazuhisa
Published: August 2019

Nausea and diarrhea are the most common adverse effects of nintedanib in patients with idiopathic pulmonary fibrosis (IPF). However, the clinical risk factors for these side effects remain unknown. In the present study, we investigated the characteristics of patients who developed gastrointestinal side effects during nintedanib treatment for IPF and determined the risk factors for these side effects. We enrolled 77 patients with IPF who received nintedanib between October 2015 and March 2018. Performance status (PS) as a patient’s general condition, body mass index (BMI), modified Medical Research Council Dyspnea Scale score, severity of IPF at nintedanib initiation, and gastrointestinal toxicity of nintedanib were evaluated. In total, 25 and 27 patients exhibited nausea and diarrhea, respectively, during the follow-up period. A poor PS, low BMI, and full dosage of nintedanib at treatment initiation were risk factors for nausea. A low BMI was a significant risk factor for diarrhea, which could be prevented by combination treatment with nintedanib and prednisolone. In addition, the mean annual rate of decline in forced vital capacity was significantly greater in patients with nausea than in patients without nausea. In conclusion, our findings suggest that patients with a low BMI and/or poor PS and those who receive the full nintedanib dosage at treatment initiation are more susceptible to gastrointestinal adverse effects during nintedanib treatment. Addition of prednisolone to the treatment regimen may prevent the development of diarrhea during treatment.
Human Fibroblast Gene Expression Modulation Using 940 NM Diode Laser
Authors: Illescas-Montes Rebeca , Melguizo-Rodríguez Lucía , García-Martínez Olga , de Luna-Bertos Elvira , Manzano-Moreno Francisco Javier , Ruiz Concepción , Ramos-Torrecillas Javier
Published: August 2019

Low-Level Laser Therapy is used as regenerative therapy in different clinical fields. This is due to its photobiomodulation effect via cell signaling on different cell populations, Including fibroblasts, cells involved in tissue regeneration and healing. The aim was to analyze the effect of 940 nm diode laser on the gene expression of different markers involved in fibroblast growth, differentiation, and migration. Real-time polymerase chain reaction (q-RT-PCR) was used to quantify the expression of fibroblast growth factor (FGF), connective tissue growth factor (CTGF), vascular-endothelial growth factor (VEGF), transforming growth factor β1 (TGF-β1), TGFβ-receptors (TGFβR1, TGFβR2, and TGFβR3), discoidin-domain receptor-2 (DDR2), matrix metalloproteinase-2 (MMP2), α-actin, fibronectin, decorin, and elastin on human fibroblast, treated with single dose (T1) or two doses (T2) of diode laser at 0.5 Watts and 4 J/cm2. A significant increase in the expression of FGF, TGF-β1, TGFβR1, TGFβR2, α-actin, fibronectin, decorin, DDR2 and MMP2 was observed after both treatments. A decrease was observed in expression of elastin (T1 and T2), and CTGF (T2). These changes underlie the biostimulatory effect of laser on fibroblasts, which translates into an increase in short-term proliferation and in long-term differentiation to myofibroblasts. These data support the therapeutic potential of diode laser for wound repair.
A Semi-Continuous Process For Polyphenols Extraction From Sea Buckthorn Leaves
Authors: Asofiei Ioana , Calinescu Ioan , Trifan Adrian , Gavrila Adina Ionuta
Published: August 2019

Sea buckthorn (Hippophae Rhamnoides L.) is an important source of bioactive compounds such as: antioxidants, vitamins, fatty acids, amino acids, and minerals. Sea buckthorn leaves extracts have been proved to have anti-microbial, antioxidant, anti-inflammatory, and anti-viral properties. In this paper, the extraction of polyphenols from sea buckthorn leaves using a semi-continuous small-scale reactor is described. The extraction conditions must not affect the composition and structure of polyphenols. For this reason, the influence of different parameters (residence time, solvent flow rate, stirring rate, reactor type, and solvent pre-heating) on the extraction process were studied. The polyphenolic extracts were analyzed in order to determine the total phenolic content (TPC), the antioxidant capacity and the concentration of the main phenolic compounds. The TPC increases with the stirring rate. Pre-heating the solvent leads to a better yield and reduced residence time. The antioxidant capacity is in concordance with the TPC results. HPLC analysis confirms that the semi-continuous microwave assisted extraction (MAE) does not affect the composition of the extracts. The energy consumption was significantly lower for MAE compared with conventional extraction (CE).
Prevalence and population genetics of the emerging honey bee pathogen DWV in Chinese apiculture
Authors: Diao Qingyun , Yang Dahe , Zhao Hongxia , Deng Shuai , Wang Xinling , Hou Chunsheng , Wilfert Lena
Published: August 2019

Honey bees are agriculturally important, both as pollinators and by providing products such as honey. The sustainability of beekeeping is at risk through factors of global change such as habitat loss, as well as through the spread of infectious diseases. In China and other parts of Asia, beekeepers rely both on nativeApis ceranaand non-nativeApis mellifera, putting bee populations at particular risk of disease emergence from multi-host pathogens. Indeed, two important honey bee parasites have emerged from East Asian honey bees, the miteVarroa destructorand the microsporidianNosema ceranae. AsV. destructorvectors viral bee diseases, we investigated whether another key bee pathogen, Deformed Wing Virus (DWV), may also have originated in East Asian honey bee populations. We use a large-scale survey of apiaries across China to investigate the prevalence and seasonality of DWV in managedA. melliferaandA. ceranacolonies, showing that DWV-A prevalence was higher inA. mellifera, with a seasonal spike in prevalence in autumn and winter. Using phylogenetic and population genetic approaches, we show that while China and East Asian DWV isolates show comparatively high levels of genetic diversity, these bee populations are not a source for the current global DWV epidemic.
Abscisic acid induced a negative geotropic response in dark-incubated Chlamydomonas reinhardtii
Authors: Al-Hijab Layla , Gregg Adam , Davies Rhiannon , Macdonald Heather , Ladomery Michael , Wilson Ian
Published: August 2019

The phytohormone abscisic acid (ABA) plays a role in stresses that alter plant water status and may also regulate root gravitropism and hydrotropism. ABA also exists in the aquatic algal progenitors of land plants, but other than its involvement in stress responses, its physiological role in these microorganisms remains elusive. We show that exogenous ABA significantly altered the HCO3− uptake of Chamydomonas reinhardtii in a light-intensity-dependent manner. In high light ABA enhanced HCO3− uptake, while under low light uptake was diminished. In the dark, ABA induced a negative geotropic movement of the algae to an extent dependent on the time of sampling during the light/dark cycle. The algae also showed a differential, light-dependent directional taxis response to a fixed ABA source, moving horizontally towards the source in the light and away in the dark. We conclude that light and ABA signal competitively in order for algae to position themselves in the water column to minimise photo-oxidative stress and optimise photosynthetic efficiency. We suggest that the development of this response mechanism in motile algae may have been an important step in the evolution of terrestrial plants and that its retention therein strongly implicates ABA in the regulation of their relevant tropisms.