bluuebunny/crossref_metadata_2025 huggingface dataset:
Myxozoan Adhesion and Virulence: Ceratonova shasta on the Move
Authors: Alama-Bermejo Gema , Holzer Astrid S. , Bartholomew Jerri L.
Published: September 2019

Motility factors are fundamental for parasite invasion, migration, proliferation and immune evasion and thus can influence parasitic disease pathogenesis and virulence. Salmonid enteronecrosis is caused by a myxozoan (Phylum Cnidarian) parasite, Ceratonova shasta. Three parasite genotypes (0, I, II) occur, with varying degrees of virulence in its host, making it a good model for examining the role of motility in virulence. We compare C. shasta cell motility between genotypes and describe how the cellular protrusions interact with the host. We support these observations with motility gene expression analyses. C. shasta stages can move by single or combined used of filopodia, lamellipodia and blebs, with different behaviors such as static adhesion, crawling or blebbing, some previously unobserved in myxozoans. C. shasta stages showed high flexibility of switching between different morphotypes, suggesting a high capacity to adapt to their microenvironment. Exposure to fibronectin showed that C. shasta stages have extraordinary adhesive affinities to glycoprotein components of the extracellular matrix (ECM). When comparing C. shasta genotypes 0 (low virulence, no mortality) and IIR (high virulence, high mortality) infections in rainbow trout, major differences were observed with regard to their migration to the target organ, gene expression patterns and proliferation rate in the host. IIR is characterized by rapid multiplication and fast amoeboid bleb-based migration to the gut, where adhesion (mediated by integrin-β and talin), ECM disruption and virulent systemic dispersion of the parasite causes massive pathology. Genotype 0 is characterized by low proliferation rates, slow directional and early adhesive migration and localized, non-destructive development in the gut. We conclude that parasite adhesion drives virulence in C. shasta and that effectors, such as integrins, reveal themselves as attractive therapeutic targets in a group of parasites for which no effective treatments are known.
Characteristics of Gut Microbiota in Patients with Hypertension and/or Hyperlipidemia: A Cross-Sectional Study on Rural Residents in Xinxiang County, Henan Province
Authors: Li Huijun , Liu Bingdong , Song Jie , An Zhen , Zeng Xiang , Li Juan , Jiang Jing , Xie Liwei , Wu Weidong
Published: September 2019

Human gut microbiota can be affected by a variety of factors, including geography. This study aimed to clarify the regional specific characteristics of gut microbiota in rural residents of Xinxiang county, Henan province, with hypertension and hyperlipidemia and evaluate the association of specific gut microbiota with hypertension and hyperlipidemia clinical indices. To identify the gut microbes, 16S rRNA gene sequencing was used and a random forest disease classifier was constructed to discriminate between the gut microbiota in hypertension, hyperlipidemia, and the healthy control. Patients with hypertension and hyperlipidemia presented with marked gut microbiota dysbiosis compared to the healthy control. The gut microbiota related to hypertension and hyperlipidemia may consist of a large number of taxa, influencing each other in a complex metabolic network. Examining the top 35 genera in each group showed that Lactococcus, Alistipes, or Subdoligranulum abundances were positively correlated with systolic blood pressure (SBP) or diastolic blood pressure (DBP) in hypertensive patients with treatment-naive hypertension (n = 63). In hypertensive patients undergoing anti-hypertensive treatment (n = 104), the abundance of Megasphaera or Megamonas was positively correlated to SBP. In the hyperlipidemia group, some of the top 35 genera were significantly correlated to triglyceride, total cholesterol, and fasting blood glucose levels. This study analyzed the characteristics of the gut microbiota in patients with hypertension and/or hyperlipidemia, providing a theoretical basis for the prevention and control of hypertension and hyperlipidemia in this region.
Chemometric Optimisation of a Copper Sulphide Tailings Flocculation Process in the Presence of Clays
Authors: Castillo Claudia , Ihle Christian F. , Jeldres Ricardo I.
Published: September 2019

The presence of fine and ultra-fine gangue minerals in flotation plants can contribute to sub-optimal valuable ore recovery and incomplete water recycling from thickeners, with the performance of the latter equipment relying on adequate flocculation. In order to study the dependence of the flocculation process on the suspension-flocculant mixing conditions, a series of experiments—chosen using chemometric analysis—were carried out by varying mixing conditions, solid concentration, water salinity and flocculant dosage. To this purpose, two different tailings (both featuring coarse and fine content) were considered and a response surface methodology based on a Doehlert experimental design was used. The results suggest that the operational conditions to optimise the flocculated tailings settling rate and the suspended solids that report to a thickener overflow are not necessarily the same. This is a reasonable outcome, given that the settling rate depends on the coarse aggregates generated in the slurry, while the overflow solids content is governed both by either fine particle content (and its characteristics) or small aggregates. It is inferred that to maximise dewatering performance two stages should be involved—a separate treatment of the thickener overflow to remove fine content and thickening at optimal flocculant dosage to enhance this process.
Alumina Extraction from Coal Fly Ash via Low-Temperature Potassium Bisulfate Calcination
Authors: Guo Chunbin , Zou Jingjing , Ma Shuhua , Yang Jianlin , Wang Kehan
Published: September 2019

Owing to the depletion of bauxite and increasing demand for alumina, calcination methods for extracting alumina from coal fly ash (CFA) were developed. However, these methods have disadvantages such as the need for high temperatures and the emission of toxic gases. Hence, in this study, Al2O3 was extracted from CFA via low-temperature potassium bisulfate calcination technology. Effects of the potassium bisulfate amount, calcination temperature, and calcination time on the alumina extraction efficiency were investigated using X-ray diffraction, thermal gravimetry, scanning electron microscopy, differential scanning calorimetry, and energy-dispersive spectroscopy. It was found that this technique could recover alumina efficiently, and potassium bisulfate significantly contributed to the degradation of mullite and corundum phases. Al2O3 in CFA was converted into soluble K3Al(SO4)3. With a KHSO4/Al2O3 molar ratio of 7:1, calcining temperature of 230 °C, and calcining time of 3 h, the alumina extraction efficiency reached a maximum of 92.8%. The Avrami–Erofeev equation showed the best fit with the kinetic data for the low-temperature calcination of CFA with KHSO4. The activation energy was 28.36 kJ/mol.
N-alkylimidazolium Salts Functionalized with p-Coumaric and Cinnamic Acid: A Study of Their Antimicrobial and Antibiofilm Effects
Authors: Forero-Doria Oscar , Araya-Maturana Ramiro , Barrientos-Retamal Anggela , Morales-Quintana Luis , Guzmán Luis
Published: September 2019

The bacterial resistance to antibiotics has compromised the therapies used for bacterial infections. Nowadays, many strategies are being carried out to address this problem. Among them, the use of natural compounds like cinnamic and p-coumaric acids stands out. Nevertheless, their utilization is limited because of their unfavorable physicochemical properties. Due to the lack of new therapeutic alternatives for bacterial infections, novel strategies have emerged, such as the use of ionic liquids; given that they can show a broad spectrum of antibacterial activity, this is why we herein report the antibacterial and antibiofilm activity of a series of N-alkylimidazolium salts functionalized with p-coumaric and cinnamic acids. The results from this study showed better antibacterial activity against Gram-positive bacteria, with a predominance of the salts derived from coumaric acid and a correlation with the chain length. Additionally, a lower efficacy was observed in the inhibition of biofilm formation, highlighting the antibiofilm activity against Staphylococcus aureus, which decreased the production of the biofilm by 52% over the control. In conclusion, we suggest that the salts derived from p-coumaric acid are good alternatives as antibacterial compounds. Meanwhile, the salt derived from cinnamic acid could be a good alternative as an antibiofilm compound.
Cyclic Peptides Acting as Allosteric Inhibitors of Human Thymidylate Synthase and Cancer Cell Growth
Authors: Pacifico Salvatore , Santucci Matteo , Luciani Rosaria , Saxena Puneet , Linciano Pasquale , Ponterini Glauco , Lauriola Angela , D’Arca Domenico , Marverti Gaetano , Guerrini Remo , Costi Maria Paola
Published: September 2019

Thymidylate synthase (TS) is a prominent drug target for different cancer types. However, the prolonged use of its classical inhibitors, substrate analogs that bind at the active site, leads to TS overexpression and drug resistance in the clinic. In the effort to identify anti-TS drugs with new modes of action and able to overcome platinum drug resistance in ovarian cancer, octapeptides with a new allosteric inhibition mechanism were identified as cancer cell growth inhibitors that do not cause TS overexpression. To improve the biological properties, 10 cyclic peptides (cPs) were designed from the lead peptides and synthesized. The cPs were screened for the ability to inhibit recombinant human thymidylate synthase (hTS), and peptide 7 was found to act as an allosteric inhibitor more potent than its parent open-chain peptide [Pro3]LR. In cytotoxicity studies on three human ovarian cancer cell lines, IGROV-1, A2780, and A2780/CP, peptide 5 and two other cPs, including 7, showed IC50 values comparable with those of the reference drug 5-fluorouracil, of the open-chain peptide [d-Gln4]LR, and of another seven prolyl derivatives of the lead peptide LR. These promising results indicate cP 7 as a possible lead compound to be chemically modified with the aim of improving both allosteric TS inhibitory activity and anticancer effectiveness.
Comparison of Engine Performance between Nano- and Microemulsions of Solketal Droplets Dispersed in Diesel Assisted by Microwave Irradiation
Authors: Lin Cherng-Yuan , Tsai Shih-Ming
Published: September 2019

As a derivative product of bio-glycerol, this study first uses solketal as a combustion improver for enhancing diesel engine characteristics. The emulsions of nanometer- and micrometer-sized droplets of solketal, which disperse evenly in the ultra-low sulfur diesel (ULSD), are formed by the effects of microwave irradiation. The performance of diesel engine fueled with the nanoemulsion of ULSD with scattered solketal droplets is analyzed and compared to that with the microemulsion. The experimental results show that the nanoemulsions can form when over 15 wt. % surfactant mixtures of Span 80 and Tween 80 and less than 5 wt. % solketal are mixed and emulsified with the remaining ULSD content, which acts as the continuous phase of the emulsions. The nanoemulsions are observed to have significantly lower brake-specific fuel consumption (bsfc) and higher fuel conversion efficiency and exhaust gas temperature than those of the microemulsions and the neat ULSD. However, the bsfc of the nanoemulsions increases with greater engine speed and gradually approaches those of the latter two test fuels. In addition, the dispersed solketal droplet sizes are mostly concentrated around 127 nm with peak intensity of 12.65% in the nanoemulsions. The microwave-assisted formation used in this study is found to successfully produce the nanoemulsions in which all of the dispersed droplet sizes are much smaller than 1000 nm.
Characterization of Eight Novel Spiroleptosphols from Fusarium avenaceum
Authors: Westphal Klaus Ringsborg , Werner Manuela Ilse Helga , Nielsen Katrine Amalie Hamborg , Sørensen Jens Laurids , Andrushchenko Valery , Winde Jacob , Hertz Morten , Jensen Mikkel Astrup , Mortensen Mathilde Lauge , Bouř Petr , Sondergaard Teis Esben , Wimmer Reinhard
Published: September 2019

Chemical analyses of Fusarium avenaceum grown on banana medium resulted in eight novel spiroleptosphols, T1, T2 and U–Z (1–8). The structures were elucidated by a combination of high-resolution mass spectrometric data and 1- and 2-D NMR experiments. The relative stereochemistry was assigned by 1H coupling and NOESY/ROESY experiments. Absolute stereochemistry established for 7 by vibrational circular dichroism was found analogous to that of the putative polyketide spiroleptosphol from Leptosphaeria doliolum.
Promutagenicity of 8-Chloroguanine, A Major Inflammation-Induced Halogenated DNA Lesion
Authors: Kou Yi , Koag Myong-Chul , Lee Seongmin
Published: September 2019

Chronic inflammation is closely associated with cancer development. One possible mechanism for inflammation-induced carcinogenesis is DNA damage caused by reactive halogen species, such as hypochlorous acid, which is released by myeloperoxidase to kill pathogens. Hypochlorous acid can attack genomic DNA to produce 8-chloro-2′-deoxyguanosine (ClG) as a major lesion. It has been postulated that ClG promotes mutagenic replication using its syn conformer; yet, the structural basis for ClG-induced mutagenesis is unknown. We obtained crystal structures and kinetics data for nucleotide incorporation past a templating ClG using human DNA polymerase β (polβ) as a model enzyme for high-fidelity DNA polymerases. The structures showed that ClG formed base pairs with incoming dCTP and dGTP using its anti and syn conformers, respectively. Kinetic studies showed that polβ incorporated dGTP only 15-fold less efficiently than dCTP, suggesting that replication across ClG is promutagenic. Two hydrogen bonds between syn-ClG and anti-dGTP and a water-mediated hydrogen bond appeared to facilitate mutagenic replication opposite the major halogenated guanine lesion. These results suggest that ClG in DNA promotes G to C transversion mutations by forming Hoogsteen base pairing between syn-ClG and anti-G during DNA synthesis.
Supercritical Antisolvent Processing of Nitrocellulose: Downscaling to Nanosize, Reducing Friction Sensitivity and Introducing Burning Rate Catalyst
Authors: Dobrynin Oleg , Zharkov Mikhail , Kuchurov Ilya , Fomenkov Igor , Zlotin Sergey , Monogarov Konstantin , Meerov Dmitry , Pivkina Alla , Muravyev Nikita
Published: September 2019

A supercritical antisolvent process has been applied to obtain the nitrocellulose nanoparticles with an average size of 190 nm from the nitrocellulose fibers of 20 μm in diameter. Compared to the micron-sized powder, nano-nitrocellulose is characterized with a slightly lower decomposition onset, however, the friction sensitivity has been improved substantially along with the burning rate increasing from 3.8 to 4.7 mm·s−1 at 2 MPa. Also, the proposed approach allows the production of stable nitrocellulose composites. Thus, the addition of 1 wt.% carbon nanotubes further improves the sensitivity of the nano-nitrocellulose up to the friction-insensitive level. Moreover, the simultaneous introduction of carbon nanotubes and nanosized iron oxide catalyzes the combustion process evidenced by a high-speed filming and resulting in the 20% burning rate increasing at 12 MPa. The presented approach to the processing of energetic nanomaterials based on the supercritical fluid technology opens the way to the production of nitrocellulose-based nanopowders with improved performance.
Electrical Measurements of Thermally Reduced Graphene Oxide Powders under Pressure
Authors: Park Hyunsoo , Lim Soomook , Nguyen Dang Du , Suk Ji Won
Published: September 2019

Graphene powders obtained via the reduction of graphene oxide flakes have been widely used in various applications as they can be synthesized in large quantities with outstanding properties. The electrical conductivity of graphene powders is critical for their uses in fabricating high-performance devices or materials. Here, we investigated the bulk electrical conductivity of reduced graphene oxide (rGO) powders depending on the applied pressure and additional thermal annealing. The electrical conductivity of the rGO powders was correlated with the change in the carbon-to-oxygen ratio via additional thermal reduction. Furthermore, the effect of the morphology of the rGO powders was studied through electromechanical measurements. This study provides a reliable method for the electromechanical characterization of rGO powders and a better understanding of the electrical conductivity of graphene-based materials.
Acute Kahweol Treatment Attenuates Traumatic Brain Injury Neuroinflammation and Functional Deficits
Authors: Lee Hung-Fu , Lin Jhih Syuan , Chang Che-Feng
Published: September 2019

Traumatic brain injury (TBI) affects millions worldwide with devastating long-term effects on health and cognition. Emerging data suggest that targeting the immune response may offer promising strategies to alleviate TBI outcomes; kahweol, an anti-inflammatory diterpene that remains in unfiltered coffee, has been shown to be beneficial in neuronal recovery. Here, we examined whether kahweol could alleviate brain trauma-induced injury in a mouse model of TBI and its underlying mechanisms. TBI was induced by controlled cortical impact (CCI) and various doses of kahweol were intraperitoneally administered following injury. Contusion volume, brain edema, neurobehavioral deficits, and protein expression and activity were evaluated in both short-term and long-term recovery. We found that kahweol treatments significantly reduced secondary brain injury and improved neurobehavioral outcomes in TBI mice. These changes were accompanied by the attenuation of proinflammatory cytokine secretion, decreased microglia/macrophage activation, and reduction of neutrophil and leukocyte infiltration. In addition, continuous kahweol treatment further improved short-term TBI outcomes compared to single-dosage. Collectively, our data showed that kahweol protects against TBI by reducing immune responses and may serve as a potential therapeutic intervention for TBI patients.
Deciphering the Genetic Architecture of Plant Height in Soybean Using Two RIL Populations Sharing a Common M8206 Parent
Authors: Cao Yongce , Li Shuguang , Chen Guoliang , Wang Yanfeng , Bhat Javaid Akhter , Karikari Benjamin , Kong Jiejie , Gai Junyi , Zhao Tuanjie
Published: September 2019

Plant height (PH) is an important agronomic trait that is closely related to soybean yield and quality. However, it is a complex quantitative trait governed by multiple genes and is influenced by environment. Unraveling the genetic mechanism involved in PH, and developing soybean cultivars with desirable PH is an imperative goal for soybean breeding. In this regard, the present study used high-density linkage maps of two related recombinant inbred line (RIL) populations viz., MT and ZM evaluated in three different environments to detect additive and epistatic effect quantitative trait loci (QTLs) as well as their interaction with environments for PH in Chinese summer planting soybean. A total of eight and 12 QTLs were detected by combining the composite interval mapping (CIM) and mixed-model based composite interval mapping (MCIM) methods in MT and ZM populations, respectively. Among these QTLs, nine QTLs viz., QPH-2, qPH-6-2MT, QPH-6, qPH-9-1ZM, qPH-10-1ZM, qPH-13-1ZM, qPH-16-1MT, QPH-17 and QPH-19 were consistently identified in multiple environments or populations, hence were regarded as stable QTLs. Furthermore, Out of these QTLs, three QTLs viz., qPH-4-2ZM, qPH-15-1MT and QPH-17 were novel. In particular, QPH-17 could detect in both populations, which was also considered as a stable and major QTL in Chinese summer planting soybean. Moreover, eleven QTLs revealed significant additive effects in both populations, and out of them only six showed additive by environment interaction effects, and the environment-independent QTLs showed higher additive effects. Finally, six digenic epistatic QTLs pairs were identified and only four additive effect QTLs viz., qPH-6-2MT, qPH-19-1MT/QPH-19, qPH-5-1ZM and qPH-17-1ZM showed epistatic effects. These results indicate that environment and epistatic interaction effects have significant influence in determining genetic basis of PH in soybean. These results would not only increase our understanding of the genetic control of plant height in summer planting soybean but also provide support for implementing marker assisted selection (MAS) in developing cultivars with ideal plant height as well as gene cloning to elucidate the mechanisms of plant height.
Molecular Basis of Soybean Resistance to Soybean Aphids and Soybean Cyst Nematodes
Authors: Neupane Surendra , Purintun Jordan M , Mathew Febina M , Varenhorst Adam J , Nepal Madhav P
Published: September 2019

Soybean aphid (SBA; Aphis glycines Matsumura) and soybean cyst nematode (SCN; Heterodera glycines Ichninohe) are major pests of the soybean (Glycine max [L.] Merr.). Substantial progress has been made in identifying the genetic basis of limiting these pests in both model and non-model plant systems. Classical linkage mapping and genome-wide association studies (GWAS) have identified major and minor quantitative trait loci (QTLs) in soybean. Studies on interactions of SBA and SCN effectors with host proteins have identified molecular cues in various signaling pathways, including those involved in plant disease resistance and phytohormone regulations. In this paper, we review the molecular basis of soybean resistance to SBA and SCN, and we provide a synthesis of recent studies of soybean QTLs/genes that could mitigate the effects of virulent SBA and SCN populations. We also review relevant studies of aphid–nematode interactions, particularly in the soybean–SBA–SCN system.
A Novel Stay-Green Mutant of Rice with Delayed Leaf Senescence and Better Harvest Index Confers Drought Tolerance
Authors: Ramkumar M. K. , Senthil Kumar S. , Gaikwad Kishor , Pandey Rakesh , Chinnusamy Viswanathan , Singh Nagendra Kumar , Singh Ashok Kumar , Mohapatra Trilochan , Sevanthi Amitha Mithra
Published: September 2019

Three Ethyl methansulphonate (EMS)-induced stay-green mutants (SGM-1, SGM-2 and SGM-3) and their wild-type (WT), were tested for their Stay-Green (SG) and drought tolerance nature as the relation between these two attributes is not yet established in rice. In the dark induced senescence assay, SGM-3 showed delayed senescence while SGM-1 and SGM-2 showed complete lack of senescence. Mutants showed stable transcript abundance over time, for 15 candidate genes (CGs) associated with senescence, compared to the WT. SGM-3 however showed moderately increasing transcript abundance over time for ATG6a, ATG4a, NYC1, NOL and NYC3. Only SGM-3 performed better than the WT for yield and harvest index under well irrigated as well as drought conditions, though all the mutants showed better performance for other agronomic traits under both the conditions and ascorbate peroxidase activity under drought. Thus, SG trait showed positive correlation with drought tolerance though only SGM-3 could convert this into higher harvest index. Sequence analysis of 80 senescence-associated genes including the 15 CGs showed non-synonymous mutations in four and six genes in SGM-1 and SGM-2 respectively, while no SNPs were found in SGM-3. Analysis of the earlier reported Quantitative Trait Loci (QTL) regions in SGM-3 revealed negligible variations from WT, suggesting it to be a novel SG mutant.
Association Mapping between Candidate Gene SNP and Production and Oil Quality Traits in Interspecific Oil Palm Hybrids
Authors: Astorkia Maider , Hernandez Mónica , Bocs Stéphanie , Lopez de Armentia Emma , Herran Ana , Ponce Kevin , León Olga , Morales Shone , Quezada Nathalie , Orellana Francisco , Wendra Fahmi , Sembiring Zulhermana , Asmono Dwi , Ritter Enrique
Published: September 2019

Oil palm production is gaining importance in Central and South America. However, the main species Elaeis guineensis (Eg) is suffering severely from bud rod disease, restricting the potential cultivation areas. Therefore, breeding companies have started to work with interspecific Elaeis oleifera × Eg (Eo × Eg) hybrids which are tolerant to this disease. We performed association studies between candidate gene (CG) single nucleotide polymorphisms (SNP) and six production and 19 oil quality traits in 198 accessions of interspecific oil palm hybrids from five different origins. For this purpose, barcoded amplicons of initially 167 CG were produced from each genotype and sequenced with Ion Torrent. After sequence cleaning 115 SNP remained targeting 62 CG. The influence of the origins on the different traits was analyzed and a genetic diversity study was performed. Two generalized linear models (GLM) with principle component analysis (PCA) or structure (Q) matrixes as covariates and two mixed linear models (MLM) which included in addition a Kinship (K) matrix were applied for association mapping using GAPIT. False discovery rate (FDR) multiple testing corrections were applied in order to avoid Type I errors. However, with FDR adjusted p values no significant associations between SNP and traits were detected. If using unadjusted p values below 0.05, seven of the studied CG showed potential associations with production traits, while 23 CG may influence different quality traits. Under these conditions the current approach and the detected candidate genes could be exploited for selecting genotypes with superior CG alleles in Marker Assisted Selection systems.
Ecophysiological Plasticity and Cold Stress Adaptation in Himalayan Alpine Herbs: Bistorta affinis and Sibbaldia procumbens
Authors: Rahman Inayat Ur , Hart Robbie , Afzal Aftab , Iqbal Zafar , Alqarawi Abdulaziz A. , Abd_Allah Elsayed Fathi , Hashem Abeer , Ijaz Farhana , Ali Niaz , Calixto Eduardo Soares
Published: September 2019

Plants have evolved several metabolic pathways as a response to environmental stressors such as low temperatures. In this perspective, it is paramount to highlight physiological mechanisms of plant responses to altitudinal gradients as a proxy to evaluate changing environments. Here, we aimed to determine the impact of elevation on the physiological attributes of two plant species along an altitudinal gradient. Our hypothesis was that the altitudinal gradient influences proline, protein, and sugar contents, as well as abscisic acid (ABA) and indole acetic acid (IAA) concentrations. We studied these physiological components in leaves collected from four different altitudinal ranges in Himalayan region of Pakistan from two native herbs, namely Bistorta affinis and Sibbaldia procumbens. Leaves were collected at the initial blooming phase from each altitudinal range, viz. 2850 m, 3250 m, 3750 m and 4250 m. We observed that most abiotic factors decrease with altitude which induces cold acclimation. A significant increase in the concentration of physiological components was observed as altitude increased, except for IAA, which decreased. Furthermore, we did not find variations in proline, ABA and IAA concentrations between species; only sugar and protein, with higher values for B. affinis. We conclude that altitudinal gradients significantly affect the physiological components of B. affinis and S. procumbens in Himalayan region. This result contributes to the understanding of how plants adapt to environmental pressures, acting as a proxy for the evaluation of impacts caused by climate changes.
The Recovery from Sulfur Starvation Is Independent from the mRNA Degradation Initiation Enzyme PARN in Arabidopsis
Authors: Armbruster Laura , Uslu Veli Vural , Wirtz Markus , Hell Rüdiger
Published: September 2019

When plants are exposed to sulfur limitation, they upregulate the sulfate assimilation pathway at the expense of growth-promoting measures. Upon cessation of the stress, however, protective measures are deactivated, and growth is restored. In accordance with these findings, transcripts of sulfur-deficiency marker genes are rapidly degraded when starved plants are resupplied with sulfur. Yet it remains unclear which enzymes are responsible for the degradation of transcripts during the recovery from starvation. In eukaryotes, mRNA decay is often initiated by the cleavage of poly(A) tails via deadenylases. As mutations in the poly(A) ribonuclease PARN have been linked to altered abiotic stress responses in Arabidopsis thaliana, we investigated the role of PARN in the recovery from sulfur starvation. Despite the presence of putative PARN-recruiting AU-rich elements in sulfur-responsive transcripts, sulfur-depleted PARN hypomorphic mutants were able to reset their transcriptome to pre-starvation conditions just as readily as wildtype plants. Currently, the subcellular localization of PARN is disputed, with studies reporting both nuclear and cytosolic localization. We detected PARN in cytoplasmic speckles and reconciled the diverging views in literature by identifying two PARN splice variants whose predicted localization is in agreement with those observations.
Association of Platelet-Rich Plasma and Auto-Crosslinked Hyaluronic Acid Microparticles: Approach for Orthopedic Application
Authors: Martins Shimojo Andréa Arruda , Santos Duarte Adriana da Silva , Santos Duarte Lana José Fábio , Malheiros Luzo Ângela Cristina , Fernandes Ana Rita , Sanchez-Lopez Elena , Barbosa  Souto Eliana , Andrade Santana Maria Helena
Published: September 2019

Platelet-rich plasma (PRP) associated with high molecular weight hyaluronic acid (HA) has been clinically used for tissue regeneration in orthopedics. Despite the recognized beneficial clinical outcomes (e.g., early pain control, improvement of patients’ functional limitation and longer-term effectiveness compared to PRP and HA alone in mild and moderate osteoarthritis treatments), its use is still challenging and controversial due to lack of standardization of association practical protocols. Moreover, most studies neglect the matrix structure, that generates the ultimate properties of the association among platelets, fibrin network and the microparticles. In the present work, we aimed to analyze the influence of the PRP/HA association with a controlled matrix structure on the stability, rheological behavior, release of growth factors and in vitro proliferation of human adipose-derived mesenchymal cells (h-AdMSCs). The attenuation of the negative charge of HA was also evaluated. Pure PRP (P-PRP) (i.e., plasma enriched with platelets and poor in leukocytes) was prepared by centrifugation and activated with serum and calcium chloride (AP-PRP). Autocrosslinked hyaluronic acid (AHA) was prepared by organocatalyzed auto-esterification and structured in microparticles (MPAHA) by shearing. The attenuation of the negative charge of MPAHA was performed with chitosan (CHT) by polyelectrolyte complexation yielding MPAHA-CHT. The results showed that microparticles (MPs) have viscoelastic properties, extrusion force and swelling ratio appropriate for injectable applications. The association of AP-PRP with the controlled structure of MPAHA and MPAHA-CHT formed a matrix composed of platelets and of a fibrin network with fibers around 160 nm located preferably on the surface of the MPs with an average diameter of 250 μm. Moreover, AP-PRP/MPAHA and AP-PRP/MPAHA-CHT associations were non-toxic and supported controlled growth factor (PDGF-AB and TGF-β1) release and in vitro proliferation of h-AdMSC with a similar pattern to that of AP-PRP alone. The best h-AdMSC proliferation was obtained with the AP-PRP/MPAHA-CHT75:25 indicating that the charge attenuation improved the cell proliferation. Thus, the association of AP-PRP with the controlled structure of HA can be a valuable approach for orthopedic applications.
Emulsion Formation and Stabilization by Biomolecules: The Leading Role of Cellulose
Authors: Costa Carolina , Medronho Bruno , Filipe Alexandra , Mira Isabel , Lindman Björn , Edlund Håkan , Norgren Magnus
Published: September 2019

Emulsion stabilization by native cellulose has been mainly hampered because of its insolubility in water. Chemical modification is normally needed to obtain water-soluble cellulose derivatives. These modified celluloses have been widely used for a range of applications by the food, cosmetic, pharmaceutic, paint and construction industries. In most cases, the modified celluloses are used as rheology modifiers (thickeners) or as emulsifying agents. In the last decade, the structural features of cellulose have been revisited, with particular focus on its structural anisotropy (amphiphilicity) and the molecular interactions leading to its resistance to dissolution. The amphiphilic behavior of native cellulose is evidenced by its capacity to adsorb at the interface between oil and aqueous solvent solutions, thus being capable of stabilizing emulsions. In this overview, the fundamentals of emulsion formation and stabilization by biomolecules are briefly revisited before different aspects around the emerging role of cellulose as emulsion stabilizer are addressed in detail. Particular focus is given to systems stabilized by native cellulose, either molecularly-dissolved or not (Pickering-like effect).
Isotactic-Polypropylene/Atactic-Polystyrene Miktoarm Star Copolymers: Synthesis and Aggregation Morphology
Authors: Wang Yuanjie , Liu Xinzhi , Liu Liying , Niu Hui
Published: September 2019

In this work, a series of isotactic-polypropylene/atactic-polystyrene (iPP/aPS) miktoarm star copolymers, PxSy, was synthesized via an arm-first approach. Varied star macromolecule architectures were fabricated by designing the arm length and the arm numbers (x and y). These miktoarm stars were able to form micelles in selective solvent (N,N′-dimethylformamide (DMF)), in which the insoluble iPP arms formed the core and the soluble aPS arms formed the shell. The miktoarm polymers aggregated to micro-nanoscale binary structures (MNBSes) in the casting process, and their morphologies, including the MNBS shape and size, were greatly influenced by the PxSy architectures. The MNBSes endowed the material surface with superhydrophobic performance with a water contact angle of 157.0° and a sliding angle of 1.5°.
Various Structural Types of Cyanide-Bridged FeIII–MnIII Bimetallic Coordination Polymers (CPs) and Polynuclear Clusters Based-on A New mer-Tricyanoiron(III)Building Block: Synthesis, Crystal Structures, and Magnetic Properties
Authors: Lan Wenlong , Hao Xiaoyun , Dou Yong , Zhou Zhen , Yang Lu , Liu Hui , Li Dacheng , Dong Yunhui , Kong Lingqian , Zhang Daopeng
Published: September 2019

Four cyanide-bridged FeIII–MnIII complexes {[Fe(qxcq)(CN)3][Mn(L1)(H2O)]}[Mn(L1)(H2O)(CH3OH)](ClO4)·1.5MeOH·0.5H2O (L1 = N,N′-bis(3-methoxy-5-bromosalicylideneiminate) (2), {[Fe(qxcq)(CN)3][Mn(L2)]}2·0.5H2O (L2 = N,N′-ethylene-bis(3-ethoxysalicylideneiminate)) (3), [Fe(qxcq)(CN)3][Mn(L3)] (L3 = bis(acetylacetonato)ethylenediimine) (4), [Fe(qxcq)(CN)3][Mn(L4)]·1.5MeOH·0.5CH3CN·0.25H2O (L4 = N,N′-(1,1,2,2-tetramethylethylene)bis(salicylideneiminate)) (5), were prepared by assembling a new structurally characterized mer-tricyanoiron(III) molecular precursor (Ph4P)[Fe(qxcq)(CN)3]·0.5H2O (qxcq− = 8-(2-quinoxaline-2-carboxamido)quinoline anion) (1) and the corresponding manganese(III) Schiff base compound. Complexes 2and 3containa cyanide-bridged heterobimetallic dinuclear entity, which can be further dimerized by self-complementary H-bond interactions through the coordinated water molecule from one complex and the free O4unit from the adjacent complex. Complexes 4 and 5 area one-dimensional coordination polymer (CP) comprised of the repeated [Mn(Schiffbase)-Fe(qxcq)(CN)3] units. Complex 4 shows a linear-chain conformation with two trans-located cyano groups bridgingthe neighboring Mn units, while complex 5 is a zigzag-like 1D CP, where the two cyano groups in cis configurationfunction as bridges. In bothcomplexes 4 and 5, the inter-chain π–πstack interactions within the aromaticrings of cyanide precursor extend the 1D chain into the supermolecular 2D networks. The magnetic property has been experimentally studied and theoretically fitted over the four Fe(III)-Mn(III) complexes, revealing the antiferromagnetic interaction in complexes 2 and 4 and the unusual ferromagnetic coupling in complexes 3 and 5 between the Fe(III) ion and the Mn(III) ion bridged by the cyano group. Furthermore, the different magnetic coupling nature has been analyzed on the basis of the magneto-structure correlation of the mer-tricyanometallate-based Fe(III)-Mn(III) magnetic system.
Hybrid Nanocomposites of Cellulose/Carbon-Nanotubes/Polyurethane with Rapidly Water Sensitive Shape Memory Effect and Strain Sensing Performance
Authors: Wu Guanzheng , Gu Yanjia , Hou Xiuliang , Li Ruiqing , Ke Huizhen , Xiao Xueliang
Published: September 2019

In this work, a fast water-responsive shape memory hybrid polymer based on thermoplastic polyurethane (TPU) was prepared by crosslinking with hydroxyethyl cotton cellulose nanofibers (CNF-C) and multi-walled carbon nanotubes (CNTs). The effect of CNTs content on the electrical conductivity of TPU/CNF-C/CNTs nanocomposite was investigated for the feasibility of being a strain sensor. In order to know its durability, the mechanical and water-responsive shape memory effects were studied comprehensively. The results indicated good mechanical properties and sensing performance for the TPU matrix fully crosslinked with CNF-C and CNTs. The water-induced shape fixity ratio (Rf) and shape recovery ratio (Rr) were 49.65% and 76.64%, respectively, indicating that the deformed composite was able to recover its original shape under a stimulus. The TPU/CNF-C/CNTs samples under their fixed and recovered shapes were tested to investigate their sensing properties, such as periodicity, frequency, and repeatability of the sensor spline under different loadings. Results indicated that the hybrid composite can sense large strains accurately for more than 103 times and water-induced shape recovery can to some extent maintain the sensing accuracy after material fatigue. With such good properties, we envisage that this kind of composite may play a significant role in developing new generations of water-responsive sensors or actuators.
Method of Moments Applied to Most-Likely High-Temperature Free-Radical Polymerization Reactions
Authors: Riazi Hossein , Arabi Shamsabadi Ahmad , Grady Michael , Rappe Andrew , Soroush Masoud
Published: September 2019

Many widely-used polymers are made via free-radical polymerization. Mathematical models of polymerization reactors have many applications such as reactor design, operation, and intensification. The method of moments has been utilized extensively for many decades to derive rate equations needed to predict polymer bulk properties. In this article, for a comprehensive list consisting of more than 40 different reactions that are most likely to occur in high-temperature free-radical homopolymerization, moment rate equations are derived methodically. Three types of radicals—secondary radicals, tertiary radicals formed through backbiting reactions, and tertiary radicals produced by intermolecular chain transfer to polymer reactions—are accounted for. The former tertiary radicals generate short-chain branches, while the latter ones produce long-chain branches. In addition, two types of dead polymer chains, saturated and unsaturated, are considered. Using a step-by-step approach based on the method of moments, this article guides the reader to determine the contributions of each reaction to the production or consumption of each species as well as to the zeroth, first and second moments of chain-length distributions of live and dead polymer chains, in order to derive the overall rate equation for each species, and to derive the rate equations for the leading moments of different chain-length distributions. The closure problems that arise are addressed by assuming chain-length distribution models. As a case study, β-scission and backbiting rate coefficients of methyl acrylate are estimated using the model, and the model is then applied to batch spontaneous thermal polymerization to predict polymer average molecular weights and monomer conversion. These predictions are compared with experimental measurements.
Fine-Tuning Meta-Heuristic Algorithm for Global Optimization
Authors: Allawi Ziyad T. , Ibraheem Ibraheem Kasim , Humaidi Amjad J.
Published: September 2019

This paper proposes a novel meta-heuristic optimization algorithm called the fine-tuning meta-heuristic algorithm (FTMA) for solving global optimization problems. In this algorithm, the solutions are fine-tuned using the fundamental steps in meta-heuristic optimization, namely, exploration, exploitation, and randomization, in such a way that if one step improves the solution, then it is unnecessary to execute the remaining steps. The performance of the proposed FTMA has been compared with that of five other optimization algorithms over ten benchmark test functions. Nine of them are well-known and already exist in the literature, while the tenth one is proposed by the authors and introduced in this article. One test trial was shown to check the performance of each algorithm, and the other test for 30 trials to measure the statistical results of the performance of the proposed algorithm against the others. Results confirm that the proposed FTMA global optimization algorithm has a competing performance in comparison with its counterparts in terms of speed and evading the local minima.
Advanced Methodologies for Biomass Supply Chain Planning
Authors: Nguyen Duc Duy , Nananukul Narameth
Published: September 2019

Renewable energy resources have received increasing attention due to environmental concerns. Biomass, one of the most important renewable energy resources, is abundant in agricultural-based countries. Typically, the biomass supply chain is large due to the huge amount of relevant data required for building the model. As a result, using a standard optimization package to determine the solution for the biomass supply chain model might not be practical. In this study, the focus is on developing and applying advanced methodologies that can be used to determine a solution for the biomass supply chain model efficiently. The decisions related to plant selection, and distribution of biomass from suppliers to plants require optimization. The methodologies considered in this research are based on stochastic programming, parameter search, and simulation-based optimization. Computational results and managerial insights based on case studies from different regions of Vietnam are provided. The results show that parameter search is suitable for small problems only, while stochastic programming is suitable for small and medium problems. For large problem, simulation-based optimization performs better when considering the quality of the solution and the run time, although, this method does not guarantee an optimal solution. It provides good solutions where the gaps to the optimal solutions are between 0.59% and 8.41%.
Darcy–Forchheimer Radiative Flow of Micropoler CNT Nanofluid in Rotating Frame with Convective Heat Generation/Consumption
Authors: O. Alzahrani Ebraheem , Shah Zahir , Alghamdi Wajdi , Zaka Ullah Malik
Published: September 2019

Since 1991, from the beginning of the carbon nanotube era, this has been a focus point for investigation due to its synthetic and simple nature. Unique properties like good stiffness, high surface area, and resilience of carbon nanotubes (CNTs) have been investigated in many engineering applications such as hydrogen storage, composite material, energy storage, electrochemical super-capacitors, transistors, sensors, and field-emitting devices. Keeping in view these applications, we investigate single and multi-walled CNTs nanofluid flow having water as the base fluid between parallel and horizontal rotating plates with microstructure and inertial properties. The thermal radiation effect is considered for variable phenomenon of heat generation/consumption. The principal equations are first symmetrically transformed to a system of nonlinear coupled ordinary differential equations (ODEs), and then, Homotopy Analysis Technique (HAM) and numerical method are employed for solving these coupled equations. The obtained analytical and numerical results are explained graphically and through different tables. The HAM and numerical results show an excellent agreement. The Skin friction and the Nusselt number are numerically calculated and then analyzed with the already published results, and these results are found to be in agreement with one another. The impact of important parameters are shown graphically.
Effective Use of Carbon Pricing on Climate Change Mitigation Projects: Analysis of the Biogas Supply Chain to Substitute Liquefied-Petroleum Gas in Mexico
Authors: Díaz-Trujillo Luis Alberto , Tovar-Facio Javier , Nápoles-Rivera Fabricio , Ponce-Ortega José María
Published: September 2019

There is presently an urgent demand for efficient and/or renewable energy technologies to correct global warming. However, these energy technologies are limited mainly by political and economic constraints of high costs and the lack of subsidy. Carbon-pricing strategies, such as carbon-emission taxes and carbon-emission trading schemes, may reduce this gap between sustainable and unsustainable energy technologies. Therefore, this paper seeks to analyze both of these carbon-pricing instruments in the Mexican energy sector to promote upgrading biogas investment and to substitute liquified petroleum gas consumption using an optimization approach. Furthermore, we propose a multi-objective optimization approach to encourage investment in the biogas supply chain supported by an effective use of carbon-pricing schemes. A case study of the central western region of Mexico was made to analyze the performance of the proposed methodologies. The results show that carbon-emission taxes and carbon-emission trading systems stimulate, with some limitations, the investment in biogas projects for fossil fuel substitution. Nevertheless, using the proposed multi-objective optimization formulation leads the discovery of a more efficient use of the above-mentioned carbon-pricing schemes, thus reaching higher economic and environmental benefits than traditional carbon-pricing policies, with a lower cost/price per ton of carbon dioxide equivalent.
Unbiased Thiol-Labeling and Top-Down Proteomic Analyses Implicate Multiple Proteins in the Late Steps of Regulated Secretion
Authors: Furber Kendra L. , Backlund Peter S. , Yergey Alfred L. , Coorssen Jens R.
Published: September 2019

Regulated exocytosis enables temporal and spatial control over the secretion of biologically active compounds; however, the mechanism by which Ca2+ modulates different stages of exocytosis is still poorly understood. For an unbiased, top-down proteomic approach, select thiol- reactive reagents were used to investigate this process in release-ready native secretory vesicles. We previously characterized a biphasic effect of these reagents on Ca2+-triggered exocytosis: low doses potentiated Ca2+ sensitivity, whereas high doses inhibited Ca2+ sensitivity and extent of vesicle fusion. Capitalizing on this novel potentiating effect, we have now identified fluorescent thiol- reactive reagents producing the same effects: Lucifer yellow iodoacetamide, monobromobimane, and dibromobimane. Top-down proteomic analyses of fluorescently labeled proteins from total and cholesterol-enriched vesicle membrane fractions using two-dimensional gel electrophoresis coupled with mass spectrometry identified several candidate targets, some of which have been previously linked to the late steps of regulated exocytosis and some of which are novel. Initial validation studies indicate that Rab proteins are involved in the modulation of Ca2+ sensitivity, and thus the efficiency of membrane fusion, which may, in part, be linked to their previously identified upstream roles in vesicle docking.