bluuebunny/crossref_metadata_2025 huggingface dataset:
Eosinophils in Oral Disease: A Narrative Review
Authors: Al-Azzawi Huda Moutaz Asmael , Paolini Rita , Cirillo Nicola , O’Reilly Lorraine Ann , Mormile Ilaria , Moore Caroline , Yap Tami , Celentano Antonio
Published: April 2024

The prevalence of diseases characterised by eosinophilia is on the rise, emphasising the importance of understanding the role of eosinophils in these conditions. Eosinophils are a subset of granulocytes that contribute to the body’s defence against bacterial, viral, and parasitic infections, but they are also implicated in haemostatic processes, including immunoregulation and allergic reactions. They contain cytoplasmic granules which can be selectively mobilised and secrete specific proteins, including chemokines, cytokines, enzymes, extracellular matrix, and growth factors. There are multiple biological and emerging functions of these specialised immune cells, including cancer surveillance, tissue remodelling and development. Several oral diseases, including oral cancer, are associated with either tissue or blood eosinophilia; however, their exact mechanism of action in the pathogenesis of these diseases remains unclear. This review presents a comprehensive synopsis of the most recent literature for both clinicians and scientists in relation to eosinophils and oral diseases and reveals a significant knowledge gap in this area of research.
The Antitumoral Effect In Ovo of a New Inclusion Complex from Dimethoxycurcumin with Magnesium and Beta-Cyclodextrin
Authors: Obregón-Mendoza Marco A. , Meza-Morales William , Rodríguez-Hernández Karla Daniela , Estévez-Carmona M. Mirian , Pérez-González Leidys L. , Tavera-Hernández Rosario , Ramírez-Apan María Teresa , Barrera-Hernández David , García-Olivares Mitzi , Monroy-Torres Brian , Nieto-Camacho Antonio , Chávez María Isabel , Sánchez-Obregón Rubén , Enríquez Raúl G.
Published: April 2024

Breast cancer is one of the leading causes of death in the female population because of the resistance of cancer cells to many anticancer drugs used. Curcumin has cytotoxic activities against breast cancer cells, although it has limited use due to its poor bioavailability and rapid metabolic elimination. The synthesis of metal complexes of curcumin and curcuminoids is a relevant topic in the search for more active and selective derivatives of these molecular scaffolds. However, solubility and bioavailability are concomitant disadvantages of these types of molecules. To overcome such drawbacks, the preparation of inclusion complexes offers a chemical and pharmacologically safe option for improving the aqueous solubility of organic molecules. Herein, we describe the preparation of the inclusion complex of dimethoxycurcumin magnesium complex (DiMeOC-Mg, (4)) with beta-cyclodextrin (DiMeOC-Mg-BCD, (5)) in the stoichiometric relationship 1:1. This new inclusion complex’s solubility in aqueous media phosphate buffer saline (PBS) was improved by a factor of 6x over the free metal complex (4). Furthermore, 5 affects cell metabolic rate, cell morphology, cell migration, induced apoptosis, and downregulation of the matrix metalloproteinase-2 (MMP-2) and matrix metalloproteinase-9 (MMP-9), interleukin-6 (IL-6), and signal transducer and activator of transcription-3 (STAT3) expression levels on MD Anderson metastasis breast-231 cancer (MDA-MB-231) cell lines. Results of an antitumor assay in an in ovo model showed up to 30% inhibition of tumor growth for breast cancer (MDA-MB-231) when using (5) (0.650 mg/kg dose) and 17.29% inhibition with the free homoleptic metal complex (1.5 mg/kg dose, (4)). While the formulation of inclusion complexes from metal complexes of curcuminoids demonstrates its usefulness in improving the solubility and bioavailability of these metallodrugs, the new compound (5) exhibits excellent potential for use as a therapeutic agent in the battle against breast cancer.
Mapping Dementia Care Technology: Tailored Digital Solutions across Stages
Authors: Ipakchian Askari Sima , Vasseur Dianne , Hofstede Bob , Koowattanataworn Piyakorn , Nap Henk Herman
Published: April 2024

Over the years, there has been an increase in the development of assistive technologies. To date, the stages of dementia that these technologies can be best implemented has been underexplored. In previous work, researchers developed an infographic providing guidance on when best to introduce assistive technologies for people with dementia, and although this infographic is relevant, it was based solely on the experience of the authors during various national and international projects. However, various studies have been conducted on the use and implementation of technology for people with dementia, providing information on when care technology should be implemented. Therefore, the aim of this paper was to conduct a literature review, and based on the results, to design an infographic showing recommendations on when to implement an assistive technology. The infographic was evaluated during interviews with experts on the implementation of care technology for people with dementia. Our results propose earlier implementation for several technologies, as well as the importance of considering contextual factors such as personal characteristics, background and technical experience when implementing technology. The designed infographic can facilitate the digital transition for healthcare institutions and personnel by offering information into the implementation process of care technology.
Improving Zinc-Ion Batteries’ Performance: The Role of Nitrogen Doping in V2O3/C Cathodes
Authors: Lin He , Cheng Huanhuan , Zhang Yu
Published: April 2024

This study presents the synthesis and electrochemical evaluation of nitrogen-doped vanadium oxide (N−V2O3/C) as a cathode material for aqueous zinc-ion batteries (AZIBs), using a hydrothermal method. Compared to undoped V2O3/C, N−V2O3/C exhibits enhanced electrical conductivity, capacity, and electrochemical kinetics, attributed to the incorporation of pyridinic and pyrrolic nitrogen. The initial charge–discharge cycles indicate phase transitions to amorphous vanadium oxides, enhancing conductivity. N−V2O3/C shows a high specific capacity of 168.4 mAh g−1 at 10 A g−1 and remarkable reversibility, highlighted by the transient existence of intermediate species during cycling. Optimal electrochemical performance is achieved with a vanadium-to-nitrogen molar ratio of 2:3, indicating the significant impact of the nitrogen doping concentration on the material’s efficiency. This work underscores the potential of N−V2O3/C as a superior cathode material for AZIBs.
Diverse Parents Decision-Making to Vaccinate Their Child under Five Attending Childcare Programs
Authors: Thompson Ernest St. John , Howe Elizabeth , Kenworthy LaMarca Tara , Natale Ruby , Jent Jason F.
Published: April 2024

Background: On 18 June 2022, Moderna and Pfizer-BioNTech COVID-19 vaccines were authorized under an Emergency Use Authorization by the United States Food and Drug Administration to prevent severe coronavirus disease in children six months to four years of age. Despite approval of the COVID-19 vaccinations for young children, there remain ongoing challenges reaching widespread coverage due to parental decision-making. Parental decision-making plays a pivotal, yet understudied, role governing vaccine adoption among this priority demographic. Methods: This cross-sectional analysis examined COVID-19 vaccine intentions for 320 predominately Hispanic parents of two to five-year-olds attending Miami-Dade County childcare programs in Florida USA, several months following the June 2022 emergency authorization. Parent’s self-reported survey data encompassed vaccine choices and rationales, social determinants of health, and parent immigrant status. Data analyses illustrate the associations between parent decision-making and these variables. Regression modeling and tests of independence identified predicting factors for parental vaccine decision-making. Results: Only 25% of parents intended to vaccinate their young child, while 34% resisted and 41% felt unsure, despite 70% personal vaccination rates. Household income under $25,000, identifying as a migrant, or testing COVID-19-positive significantly predicted unsure decision-making. The majority of hesitant groups expressed concerns around side effects (20%), safety (2.9%), and sufficiency of vaccine knowledge (3.3%). Conclusions: In this sample, the predominance of parents were unsure and resistant rather than accepting of having their child vaccinated despite emergency approval of the pediatric vaccine. Associations and predictive factors are examined.
High Dynamic Range Image Reconstruction from Saturated Images of Metallic Objects
Authors: Tominaga Shoji , Horiuchi Takahiko
Published: April 2024

This study considers a method for reconstructing a high dynamic range (HDR) original image from a single saturated low dynamic range (LDR) image of metallic objects. A deep neural network approach was adopted for the direct mapping of an 8-bit LDR image to HDR. An HDR image database was first constructed using a large number of various metallic objects with different shapes. Each captured HDR image was clipped to create a set of 8-bit LDR images. All pairs of HDR and LDR images were used to train and test the network. Subsequently, a convolutional neural network (CNN) was designed in the form of a deep U-Net-like architecture. The network consisted of an encoder, a decoder, and a skip connection to maintain high image resolution. The CNN algorithm was constructed using the learning functions in MATLAB. The entire network consisted of 32 layers and 85,900 learnable parameters. The performance of the proposed method was examined in experiments using a test image set. The proposed method was also compared with other methods and confirmed to be significantly superior in terms of reconstruction accuracy, histogram fitting, and psychological evaluation.
CFD-Based Study on the Flow and Kinetic Energy Characteristics of a Supercritical Suspended Abrasive Water Jet in the Deep-Sea Environment
Authors: Li Zhibo , Wang Xiangyu , Yao Shaoming , Wang Liquan , Yun Feihong
Published: April 2024

A supercritical suspended abrasive water jet with dual inputs of pressure and heat is proposed to improve the cutting performance of the conventional suspended abrasive water jet in deep-sea environments. The paper studies the flow and kinetic characteristics of the supercritical suspended abrasive water jet. The CFD simulation method is proposed to investigate these characteristics by integrating a programmed database of supercritical water material properties with Ansys Fluent. The simulation and comparison show that abrasive particle density, abrasive particle size, inlet pressure, and water temperature affect the acceleration process of the abrasive particles. At the nozzle outlet, the velocity of the abrasive particles reaches over 95% of the supercritical water velocity. With the proposed supercritical abrasive water jet, the jet velocity is increased by 192.2% to 402.40 m/s compared to the conventional suspended abrasive water jet, reducing the amount of water used by 67.7% at a specified temperature of 773.15 K. Correspondingly, the medium kinetic energy is increased by 177.7% and the medium kinetic energy ratio is 2.78. The particle kinetic energy is increased by 723.2% and the particle kinetic energy ratio is 8.23.
Power Generation Enhancement through Latching Control for a Sliding Magnet-Based Wave Energy Converter
Authors: Lee Yongseok , Kang HeonYong , Kim MooHyun
Published: April 2024

A Surface-Riding Wave Energy Converter (SR-WEC) featuring a sliding magnet inside a pitching cylindrical hull is investigated as an easily deployable small power device to support small-scale marine operations. This study extends the earlier development of the system by authors to enhance power performance through the application of end spring and latching control. The inclusion of springs at the tube’s end enhances the magnet release and travel speeds as well as the average power output compared to systems without them. Further improvement of power output can also be achieved by employing optimal latching control. We introduced constant-angle and variable-angle unlatching strategies to determine optimal parameters in combination with passive and reactive power take-off (PTO) controls to assess their effectiveness. The optimized latching control and end spring can increase 60–80% more power output compared with the case without them under certain PTO damping. Additionally, we discussed the effects of limiting peak powers and associated energy leaks with latching.
The Spatial Coupling of Fluid Pathways with Gas Hydrates and Shallow Gas Reservoirs: A Case Study in the Qiongdongnan Basin, South China Sea
Authors: Wu Songlin , Wu Shiguo , Sun Jin , Li Qingping , Chen Junjin , Chen Yuan , Zhou Xueqing , Khan Umair
Published: April 2024

Shallow gas reservoirs play a crucial role in the gas hydrate system. However, the factors influencing their distribution and their relationship with the gas hydrate system remain poorly understood. In this study, we utilize three-dimensional seismic data to show the fluid pathways and shallow gas reservoirs within the gas hydrate system in the Qiongdongnan Basin. From the deep to the shallow sections, four types of fluid pathways, including tectonic faults, polygonal faults, gas chimneys, and gas conduits, are accurately identified, indicating the strong spatial interconnection among them. The gas pipes are consistently found above the gas chimneys, which act as concentrated pathways for thermogenic gases from the deep sections to the shallow sections. Importantly, the distribution of the gas chimneys closely corresponds to the distribution of the Bottom Simulating Reflector (BSR) in the gas hydrate system. The distribution of the shallow gas reservoirs is significantly influenced by these fluid pathways, with four reservoirs located above tectonic faults and polygonal faults, while one reservoir is situated above a gas chimney. Furthermore, all four shallow gas reservoirs are situated below the BSR, and their distribution range exhibits minimal to no overlap with the distribution of the BSR. Our findings contribute to a better understanding of shallow gas reservoirs and the gas hydrate system, providing valuable insights for their future commercial development.
Factors Affecting the Land Investment Decisions in the Old Members of the European Union: A Systematic Literature Review
Authors: Russo Silvia , Ghelfi Rino , Raggi Meri , Viaggi Davide
Published: April 2024

In response to concerns over land concentration and access within the European Union, this study seeks to elucidate the factors influencing farmers’ decisions to invest in land and the consequent growth of farm size. Employing a systematic literature review utilizing the PRISMA method, we delve into theoretical and empirical studies to bridge the gap between agricultural management practices and land market dynamics. Our analysis reveals a complex interplay of endogenous and exogenous factors, including technological advancements, farm characteristics, demographic factors, macroeconomic conditions, and policy environment, significantly impacting investment behaviours and farm growth trajectories. The research highlights the underexplored impact of external factors like policy and land regulation, which are scarcely addressed in empirical studies despite their substantial influence on farm-size evolution and investment decisions. Furthermore, the study emphasizes the need for future research to incorporate a more comprehensive framework that integrates internal farm dynamics with broader economic and policy contexts, thereby facilitating a deeper understanding of the agricultural sector’s resilience and sustainability. The findings underscore the critical role of adopting innovative methodologies and approaches to fully understand the dynamics of farm growth and land investments, aiming to support policymakers, stakeholders, and researchers in fostering sustainable agricultural practices.
Importance of Multimodality Cardiac Imaging in the Diagnosis of Lipomatous Hypertrophy of the Interatrial Septum—A View beyond Standard Situations
Authors: Șoșdean Raluca , Lazăr Mihai-Andrei , Pescariu Silvius Alexandru , Mircea Monica-Nicoleta , Lala Radu Ioan , Mornoș Cristian , Luca Constantin Tudor , Ionac Adina
Published: April 2024

Lipomatous hypertrophy of the interatrial septum (LHIAS) represents a benign proliferation of lipoid cells at the level of the interatrial septum (IAS) inducing an important thickening of this structure. It respects the fossa ovalis (FO) region, having a typical “hourglass” echocardiographic appearance. There are certain cases though, with unusual appearances and/or with associated pathologies that may induce similar lesions in the heart, in which the differential diagnosis cannot be guaranteed using only the standard methods. The final diagnosis has important implications in these patients’ treatment plan. In this paper, we present an unusual case of a female patient undergoing chemotherapy for lung carcinoma, suspected of right atrial thrombosis/metastasis. As the diagnosis was unclear after transthoracic echocardiography (TTE), inducing the suspicion of an IAS mass with atrial wall infiltration, bi- and tridimensional transesophageal echocardiography (TOE) was performed, revealing a severely and homogenously hypertrophied IAS respecting the FO, but lacking a clear visualization of the atrial wall. The diagnosis of LHIAS was established by cardiac magnetic resonance (CMR) that certified the adipose nature of the structure, excluding the need for invasive investigations and/or treatment options. Multimodality imaging is very important for the clinician in adopting the best management plan for each individual patient.
Do They Know What They Are Doing? Cognitive Aspects of Rescue Behaviour Directed by Workers of the Red Wood Ant Formica polyctena to Nestmate Victims Entrapped in Artificial Snares
Authors: Szczuka Anna , Sochacka-Marlowe Alicja , Korczyńska Julita , Mazurkiewicz Paweł Jarosław , Symonowicz Beata , Kukina Olga , Godzińska Ewa Joanna
Published: April 2024

Ant rescue behaviour belongs to the most interesting subcategories of prosocial and altruistic behaviour encountered in the animal world. Several studies suggested that ants are able to identify what exactly restrains the movements of another individual and to direct their rescue behaviour precisely to that object. To shed more light on the question of how precise the identification of the source of restraint of another ant is, we investigated rescue behaviour of red wood ant Formica polyctena workers, using a new version of an artificial snare bioassay in which a nestmate victim bore two wire loops on its body, one (acting as a snare) placed on its petiole and an additional one on its leg. The tested ants did not preferentially direct their rescue behaviour towards the snare. Moreover, the overall strategy adopted by the most active rescuers was not limited to precisely targeted rescue attempts directed towards the snare, but consisted of frequent switching between various subcategories of rescue behaviour. These findings highlight the importance of precise identification of cognitive processes and overall behavioural strategies for better understanding of causal factors underlying animal helping behaviour in light of new facts discovered by testing of various successive research hypotheses.
Experimental Investigation of a Free-Form Honed Cylinder Liner for Heavy-Duty Engines
Authors: Stelljes Frederik , Pohlmann-Tasche Florian , Dinkelacker Friedrich
Published: April 2024

For future internal combustion engines, driven by regenerative fuels, efficiency is more important than ever. One approach to reduce the losses inside the piston cylinder unit (PCU) is to improve the alignment of the liner and the piston. Therefore, a cylinder liner with a free form was developed at the Institute of Technical Combustion (ITV) of the Leibniz University Hannover which compensates radial and linear deformations along the stroke. The layout is based on a FEM simulation. The liner was manufactured by the Institute of Production Engineering and Machine Tools (IFW) of Leibniz University of Hannover with a novel turn-milling process. The liner was investigated on the heavy-duty Floating-Liner engine of ITV with a displacement of 1991 ccm and a bore diameter of 130 mm. The experimental results show improvement in the friction losses over the whole engine map in the range of 9% and up to 17.3% compared to a serial liner. Sealing efficiency could be improved up to 28.8%, depending on the operational point. Overall, the investigation aims for lower fuel consumption which would in result fewer emissions.
Electrochemical Characterization of Electrodeposited Copper in Amine CO2 Capture Media
Authors: Penot Corentin , Maniam Kranthi Kumar , Paul Shiladitya
Published: April 2024

This study explores the stability of electrodeposited copper catalysts utilized in electrochemical CO2 reduction (ECR) across various amine media. The focus is on understanding the influence of different amine types, corrosion ramifications, and the efficacy of pulse ECR methodologies. Employing a suite of electrochemical techniques including potentiodynamic polarization, linear resistance polarization, cyclic voltammetry, and chronopotentiometry, the investigation reveals useful insights. The findings show that among the tested amines, CO2-rich monoethanolamine (MEA) exhibits the highest corrosion rate. However, in most cases, the rates remain within tolerable limits for ECR operations. Primary amines, notably monoethanolamine (MEA), show enhanced compatibility with ECR processes, attributable to their resistance against carbonate salt precipitation and sustained stability over extended durations. Conversely, tertiary amines such as methyldiethanolamine (MDEA) present challenges due to the formation of carbonate salts during ECR, impeding their effective utilization. This study highlights the effectiveness of pulse ECR strategies in stabilizing ECR. A noticeable shift in cathodic potential and reduced deposit formation on the catalyst surface through periodic oxidation underscores the efficacy of such strategies. These findings offer insights for optimizing ECR in amine media, thereby providing promising pathways for advancements in CO2 emission reduction technologies.
Understanding the Relationship between Surface Quality and Chip Morphology under Sustainable Cutting Environments
Authors: Günay Mustafa , Korkmaz Mehmet Erdi
Published: April 2024

Although chip morphology changes according to the machining method and related cutting parameters, chip formation affects the quality of the machined surface. In this context, it is very important to understand the relationship between chip morphology and surface quality, especially in materials that are difficult to machine. In the presented study, the changes in chip morphology, surface morphology, and surface quality criteria (Ra and Rz) that occurred during the milling of precipitation-hardened steel in different cutting environments were analyzed. Milling experiments were carried out in dry, MQL (minimum quantity lubrication), nano-MQL (graphene), nano-MQL (hBN), Cryo, and Cryo-MQL environments using TiAlN-coated inserts and three different cutting speeds and feed rates. While the highest values in terms of Ra and Rz were measured in dry machining, the minimum values were obtained in a nano-MQL (hBN) cutting environment. Due to the lubrication and low friction provided by the MQL cutting environment, chips were formed in thinner segmented forms. This formation reduced the chip curve radius and thus provided a more stable surface morphology. On the other hand, Cryo-ambient gas could not effectively leak into the cutting zone due to the intermittent cutting process, but it increased the brittleness of the chips with the cooling effect and provided a similar surface morphology. The values of minimum Ra and Rz were obtained as 0.304 mm and 1.825 mm, respectively, at a 60 m/min cutting speed and 0.04 mm/rev feed. Consequently, the use of nano-MQL cutting medium is seriously recommended in terms of surface quality in milling operations of difficult-to-machine materials.
Comparing Electrochemical Passivation and Surface Film Chemistry of 654SMO Stainless Steel and C276 Alloy in Simulated Flue Gas Desulfurization Condensates
Authors: Liao Luhai , Cheng Yifan , Zhang He , Yuan Xuwen , Li Fengguang
Published: April 2024

This research examines the behavior of electrochemical passivation and the chemistry of surface films on 654SMO super austenitic stainless steel and C276 nickel-based alloy in simulated condensates from flue gas desulfurization in power plant chimneys. The findings indicate that the resistance to polarization of the protective film on both materials initially rises and then falls with either time spent in the solution or the potential of anodic polarization. Comparatively, 654SMO exhibits greater polarization resistance than C276, indicating its potential suitability as a chimney lining material. Mott–Schottky analysis demonstrates that the density of donors in the passive film formed on 654SMO exceeds that on C276, potentially due to the abundance of Fe oxide in the passive film, which exhibits the characteristics of an n-type semiconductor. The primary components of the passive films on both materials are Fe oxides and Cr oxides. The formation of a thin passive film on C276 in the simulated condensates is a result of the low Gibbs free energy of nickel oxide and low Cr content. The slower diffusion coefficient of point defects leads to the development of a thicker and more compact passive film on the surface of 654SMO.
Recycling Waste Agricultural Nets as Cement Composites
Authors: Zegardło Bartosz , Maraveas Chrysanthos , Świeczka Kamil , Bombik Antoni
Published: April 2024

The advancement of agricultural mesh technology has contributed to its improved properties. As a result, agricultural nets are widely adopted in large-scale farming applications, for example, in cereal crop farming. However, a consequence of this increased use of agricultural nets is the accumulation of large amounts of waste. The current paper focuses on the recycling of agricultural nets used in wrapping straw bales to develop additives and fillers in cement composites. The research details an analysis of the use of waste agricultural meshes as an ingredient in cement composites. Six test series of different mixtures were conducted. In the first four series, agricultural waste was utilised as an additive in a composite comprising aggregate and cement slurry (the amounts of wasted nets were 20, 40, 60, and 80 kg/m3). In the last test series, the recyclate utilised comprised a mixture of cement slurry and waste only. The composites were subjected to standard tests and thermal resistance tests. The results showcased that that the addition of a net worsened the workability of the concrete mixture, and with increasing amounts of addition, the consistency of the mixture could change from liquid to dense plastic. The flexural strength of the composite decreased with increasing amounts of recyclate. In subsequent test series, the flexural strength value was lower than that of the control (3.93 MPa), from 7.38% (3.64 MPa) for the composite with 20 kg/m3 of recyclate to 37.66% (2.45 MPa) for the composite with of 80 kg/m3 recyclate. The flexural strength value of the net-filled composite without aggregate was very high (10.44 MPa), where the value obtained for the control composite was 62.36% lower. The results of the compressive strength test showed a decrease in this parameter with increasing amounts of additive. The value assessed for the control composite was 27.99 MPa. As expected, the composite that had no aggregate and consisted of only recycled filler had the lowest compressive strength. The value of this parameter was 13.07 MPa, and it was 53.31% lower than that of the control composite. The results of the tests of resistance to temperatures were similar to those recorded for the composites with polypropylene fibres. All composites demonstrated a significant decrease in their compressive and flexural strength after annealing. SEM imaging showed that the net fibres were closely bonded to the cement stone. Finally, it was concluded that recyclates performed best as fillers in lightweight composites with a low density, low absorption, high flexural strength, and satisfactory compressive strength.
Recent Advances in Magnetically Actuated Droplet Manipulation for Biomedical Applications
Authors: Li Jiaqi , Su Kaixin , Liu Hailan , Zou Yuan
Published: April 2024

The manipulation of droplets plays a vital role in biomedicine, chemistry, and hydromechanics, especially in microfluidics. Magnetic droplet manipulation has emerged as a prominent and advanced technique in comparison to other modes such as dielectric infiltration, optical radiation, and surface acoustic waves. Its notable progress is attributed to several advantages, including excellent biocompatibility, remote and non-contact control, and instantaneous response. This review provides a comprehensive overview of recent developments in magnetic droplet manipulation and its applications within the biomedical field. Firstly, the discussion involves an examination of the distinctive features associated with droplet manipulation based on both permanent magnet and electromagnet principles, along with a thorough exploration of the influencing factors impacting magnetic droplet manipulation. Additionally, an in-depth review of magnetic actuation mechanisms and various droplet manipulation methods is presented. Furthermore, the article elucidates the biomedical applications of magnetic droplet manipulation, particularly its role in diagnostic assays, drug discovery, and cell culture. Finally, the highlights and challenges of magnetic droplet manipulation in biomedical applications are described in detail.
Modeling Error and Nonuniqueness of the Continuous-Time Models Learned via Runge–Kutta Methods
Authors: Terakawa Shunpei , Yaguchi Takaharu
Published: April 2024

In the present study, we consider continuous-time modeling of dynamics using observed data and formulate the modeling error caused by the discretization method used in the process. In the formulation, a class of linearized dynamics called Dahlquist’s test equations is used as representative of the target dynamics, and the characteristics of each discretization method for various dynamics are taken into account. The family of explicit Runge–Kutta methods is analyzed as a specific discretization method using the proposed framework. As a result, equations for predicting the modeling error are derived, and it is found that there can be multiple possible models obtained when using these methods. Several learning experiments using a simple neural network exhibited consistent results with theoretical predictions, including the nonuniqueness of the resulting model.
Association between Genetic Polymorphism of SCN1A, GABRA1 and ABCB1 and Drug Responsiveness in Vietnamese Epileptic Children
Authors: Tang Hai Xuan , Ho Muoi Dang , Vu Nhung Phuong , Cao Hung Vu , Ngo Vinh Anh , Nguyen Van Thi , Nguyen Thuan Duc , Nguyen Ton Dang
Published: April 2024

Background and Objectives: Drug resistant epilepsy (DRE) is a major hurdle in epilepsy, which hinders clinical care, patients’ management and treatment outcomes. DRE may partially result from genetic variants that alter proteins responsible for drug targets and drug transporters in the brain. We aimed to examine the relationship between SCN1A, GABRA1 and ABCB1 polymorphism and drug response in epilepsy children in Vietnam. Materials and Methods: In total, 213 children diagnosed with epilepsy were recruited in this study (101 were drug responsive and 112 were drug resistant). Sanger sequencing had been performed in order to detect six single nucleotide polymorphisms (SNPs) belonging to SCN1A (rs2298771, rs3812718, rs10188577), GABRA1 (rs2279020) and ABCB1 (rs1128503, rs1045642) in study group. The link between SNPs and drug response status was examined by the Chi-squared test or the Fisher’s exact test. Results: Among six investigated SNPs, two SNPs showed significant difference between the responsive and the resistant group. Among those, heterozygous genotype of SCN1A rs2298771 (AG) were at higher frequency in the resistant patients compared with responsive patients, playing as risk factor of refractory epilepsy. Conversely, the heterozygous genotype of SCN1A rs3812718 (CT) was significantly lower in the resistant compared with the responsive group. No significant association was found between the remaining four SNPs and drug response. Conclusions: Our study demonstrated a significant association between the SCN1A genetic polymorphism which increased risk of drug-resistant epilepsy in Vietnamese epileptic children. This important finding further supports the underlying molecular mechanisms of SCN1A genetic variants in the pathogenesis of drug-resistant epilepsy in children.
Ecological Trait-Based Digital Categorization of Microbial Genomes for Denitrification Potential
Authors: Isokpehi Raphael D. , Kim Yungkul , Krejci Sarah E. , Trivedi Vishwa D.
Published: April 2024

Microorganisms encode proteins that function in the transformations of useful and harmful nitrogenous compounds in the global nitrogen cycle. The major transformations in the nitrogen cycle are nitrogen fixation, nitrification, denitrification, anaerobic ammonium oxidation, and ammonification. The focus of this report is the complex biogeochemical process of denitrification, which, in the complete form, consists of a series of four enzyme-catalyzed reduction reactions that transforms nitrate to nitrogen gas. Denitrification is a microbial strain-level ecological trait (characteristic), and denitrification potential (functional performance) can be inferred from trait rules that rely on the presence or absence of genes for denitrifying enzymes in microbial genomes. Despite the global significance of denitrification and associated large-scale genomic and scholarly data sources, there is lack of datasets and interactive computational tools for investigating microbial genomes according to denitrification trait rules. Therefore, our goal is to categorize archaeal and bacterial genomes by denitrification potential based on denitrification traits defined by rules of enzyme involvement in the denitrification reduction steps. We report the integration of datasets on genome, taxonomic lineage, ecosystem, and denitrifying enzymes to provide data investigations context for the denitrification potential of microbial strains. We constructed an ecosystem and taxonomic annotated denitrification potential dataset of 62,624 microbial genomes (866 archaea and 61,758 bacteria) that encode at least one of the twelve denitrifying enzymes in the four-step canonical denitrification pathway. Our four-digit binary-coding scheme categorized the microbial genomes to one of sixteen denitrification traits including complete denitrification traits assigned to 3280 genomes from 260 bacteria genera. The bacterial strains with complete denitrification potential pattern included Arcobacteraceae strains isolated or detected in diverse ecosystems including aquatic, human, plant, and Mollusca (shellfish). The dataset on microbial denitrification potential and associated interactive data investigations tools can serve as research resources for understanding the biochemical, molecular, and physiological aspects of microbial denitrification, among others. The microbial denitrification data resources produced in our research can also be useful for identifying microbial strains for synthetic denitrifying communities.
Molecular Mechanisms of Lacticaseibacillus rhamnosus, LGG® Probiotic Function
Authors: Leser Thomas , Baker Adam
Published: April 2024

To advance probiotic research, a comprehensive understanding of bacterial interactions with human physiology at the molecular and cellular levels is fundamental. Lacticaseibacillus rhamnosus LGG® is a bacterial strain that has long been recognized for its beneficial effects on human health. Probiotic effector molecules derived from LGG®, including secreted proteins, surface-anchored proteins, polysaccharides, and lipoteichoic acids, which interact with host physiological processes have been identified. In vitro and animal studies have revealed that specific LGG® effector molecules stimulate epithelial cell survival, preserve intestinal barrier integrity, reduce oxidative stress, mitigate excessive mucosal inflammation, enhance IgA secretion, and provide long-term protection through epigenetic imprinting. Pili on the cell surface of LGG® promote adhesion to the intestinal mucosa and ensure close contact to host cells. Extracellular vesicles produced by LGG® recapitulate many of these effects through their cargo of effector molecules. Collectively, the effector molecules of LGG® exert a significant influence on both the gut mucosa and immune system, which promotes intestinal homeostasis and immune tolerance.
Machine Learning to Identify Critical Biomarker Profiles in New SARS-CoV-2 Variants
Authors: Schatz Christoph , Knabl Ludwig , Lee Hye Kyung , Seeboeck Rita , von Laer Dorothee , Lafon Eliott , Borena Wegene , Mangge Harald , Prüller Florian , Qerimi Adelina , Wilflingseder Doris , Posch Wilfried , Haybaeck Johannes
Published: April 2024

The global dissemination of SARS-CoV-2 resulted in the emergence of several variants, including Alpha, Alpha + E484K, Beta, and Omicron. Our research integrated the study of eukaryotic translation factors and fundamental components in general protein synthesis with the analysis of SARS-CoV-2 variants and vaccination status. Utilizing statistical methods, we successfully differentiated between variants in infected individuals and, to a lesser extent, between vaccinated and non-vaccinated infected individuals, relying on the expression profiles of translation factors. Additionally, our investigation identified common causal relationships among the translation factors, shedding light on the interplay between SARS-CoV-2 variants and the host’s translation machinery.
Pannonibacter anstelovis sp. nov. Isolated from Two Cases of Bloodstream Infections in Paediatric Patients
Authors: Castellana Stefano , De Laurentiis Vittoriana , Bianco Angelica , Del Sambro Laura , Grassi Massimo , De Leonardis Francesco , Derobertis Anna Maria , De Carlo Carmen , Sparapano Eleonora , Mosca Adriana , Stolfa Stefania , Ronga Luigi , Santacroce Luigi , Chironna Maria , Parisi Michela , Capozzi Loredana , Parisi Antonio
Published: April 2024

This study describes two cases of bacteraemia sustained by a new putative Pannonibacter species isolated at the U.O.C. of Microbiology and Virology of the Policlinico of Bari (Bari, Italy) from the blood cultures of two patients admitted to the Paediatric Oncohaematology Unit. Pannonibacter spp. is an environmental Gram-negative bacterium not commonly associated with nosocomial infections. Species identification was performed using Sanger sequencing of the 16S rRNA gene and Whole-Genome Sequencing (WGS) for both strains. Genomic analyses for the two isolates, BLAST similarity search, and phylogeny for the 16S rDNA sequences lead to an assignment to the species Pannonibacter phragmitetus. However, by performing ANIb, ANIm, tetranucleotide correlation, and DNA-DNA digital hybridization, analyses of the two draft genomes showed that they were very different from those of the species P. phragmitetus. MALDI-TOF analysis, assessment of antimicrobial susceptibility by E-test method, and Analytical Profile Index (API) tests were also performed. This result highlights how environmental bacterial species can easily adapt to the human host and, especially in nosocomial environments, also gain pathogenic potential through antimicrobial resistance.
Variations and Interseasonal Changes in the Gut Microbial Communities of Seven Wild Fish Species in a Natural Lake with Limited Water Exchange during the Closed Fishing Season
Authors: Liang Yangyang , Wang Zijia , Gao Na , Qi Xiaoxue , Zeng Juntao , Cui Kai , Lu Wenxuan , Bai Shijie
Published: April 2024

The gut microbiota of fish is crucial for their growth, development, nutrient uptake, physiological balance, and disease resistance. Yet our knowledge of these microbial communities in wild fish populations in their natural ecosystems is insufficient. This study systematically examined the gut microbial communities of seven wild fish species in Chaohu Lake, a fishing-restricted area with minimal water turnover, across four seasons. We found significant variations in gut microbial community structures among species. Additionally, we observed significant seasonal and regional variations in the gut microbial communities. The Chaohu Lake fish gut microbial communities were predominantly composed of the phyla Firmicutes, Proteobacteria(Gamma), Proteobacteria(Alpha), Actinobacteriota, and Cyanobacteria. At the genus level, Aeromonas, Cetobacterium, Clostridium sensu stricto 1, Romboutsia, and Pseudomonas emerged as the most prevalent. A co-occurrence network analysis revealed that C. auratus, C. carpio, and C. brachygnathus possessed more complex and robust gut microbial networks than H. molitrix, C. alburnus, C. ectenes taihuensis, and A. nobilis. Certain microbial groups, such as Clostridium sensu stricto 1, Romboutsia, and Pseudomonas, were both dominant and keystone in the fish gut microbial network. Our study offers a new approach for studying the wild fish gut microbiota in natural, controlled environments. It offers an in-depth understanding of gut microbial communities in wild fish living in stable, limited water exchange natural environments.
Expanding the CRISPR Toolbox for Engineering Lycopene Biosynthesis in Corynebacterium glutamicum
Authors: Zhan Zhimin , Chen Xiong , Ye Zhifang , Zhao Ming , Li Cheng , Gao Shipeng , Sinskey Anthony J. , Yao Lan , Dai Jun , Jiang Yiming , Zheng Xueyun
Published: April 2024

Lycopene represents one of the central compounds in the carotenoid pathway and it exhibits a potent antioxidant ability with wide potential applications in medicine, food, and cosmetics. The microbial production of lycopene has received increasing concern in recent years. Corynebacterium glutamicum (C. glutamicum) is considered to be a safe and beneficial industrial production platform, naturally endowed with the ability to produce lycopene. However, the scarcity of efficient genetic tools and the challenge of identifying crucial metabolic genes impede further research on C. glutamicum for achieving high-yield lycopene production. To address these challenges, a novel genetic editing toolkit, CRISPR/MAD7 system, was established and developed. By optimizing the promoter, ORI and PAM sequences, the CRISPR/MAD7 system facilitated highly efficient gene deletion and exhibited a broad spectrum of PAM sites. Notably, 25 kb of DNA from the genome was successfully deleted. In addition, the CRISPR/MAD7 system was effectively utilized in the metabolic engineering of C. glutamicum, allowing for the simultaneous knockout of crtEb and crtR genes in one step to enhance the accumulation of lycopene by blocking the branching pathway. Through screening crucial genes such as crtE, crtB, crtI, idsA, idi, and cg0722, an optimal carotenogenic gene combination was obtained. Particularly, cg0722, a membrane protein gene, was found to play a vital role in lycopene production. Therefore, the CBIEbR strain was obtained by overexpressing cg0722, crtB, and crtI while strategically blocking the by-products of the lycopene pathway. As a result, the final engineered strain produced lycopene at 405.02 mg/L (9.52 mg/g dry cell weight, DCW) in fed-batch fermentation, representing the highest reported lycopene yield in C. glutamicum to date. In this study, a powerful and precise genetic tool was used to engineer C. glutamicum for lycopene production. Through the modifications between the host cell and the carotenogenic pathway, the lycopene yield was stepwise improved by 102-fold as compared to the starting strain. This study highlights the usefulness of the CRISPR/MAD7 toolbox, demonstrating its practical applications in the metabolic engineering of industrially robust C. glutamicum.
The Role of mRNA Alternative Splicing in Macrophages Infected with Mycobacterium tuberculosis: A Field Needing to Be Discovered
Authors: Hong Weiling , Yang Hongxing , Wang Xiao , Shi Jingyi , Zhang Jian , Xie Jianping
Published: April 2024

Mycobacterium tuberculosis (Mtb) is one of the major causes of human death. In its battle with humans, Mtb has fully adapted to its host and developed ways to evade the immune system. At the same time, the human immune system has developed ways to respond to Mtb. The immune system responds to viral and bacterial infections through a variety of mechanisms, one of which is alternative splicing. In this study, we summarized the overall changes in alternative splicing of the transcriptome after macrophages were infected with Mtb. We found that after infection with Mtb, cells undergo changes, including (1) directly reducing the expression of splicing factors, which affects the regulation of gene expression, (2) altering the original function of proteins through splicing, which can involve gene truncation or changes in protein domains, and (3) expressing unique isoforms that may contribute to the identification and development of tuberculosis biomarkers. Moreover, alternative splicing regulation of immune-related genes, such as IL-4, IL-7, IL-7R, and IL-12R, may be an important factor affecting the activation or dormancy state of Mtb. These will help to fully understand the immune response to Mtb infection, which is crucial for the development of tuberculosis biomarkers and new drug targets.
Dendritic Pyridine–Imine Copper Complexes as Metallo-Drugs
Authors: Laurent Régis , Maraval Valérie , Bernardes-Génisson Vania , Caminade Anne-Marie
Published: April 2024

Since the discovery of cisplatin in the 1960s, the search for metallo-drugs that are more efficient than platinum complexes with negligible side effects has attracted much interest. Among the other metals that have been examined for potential applications as anticancer agents is copper. The interest in copper was recently boosted by the discovery of cuproptosis, a recently evidenced form of cell death mediated by copper. However, copper is also known to induce the proliferation of cancer cells. In view of these contradictory results, there is a need to find the most suitable copper chelators, among which Schiff-based derivatives offer a wide range of possibilities. Gathering several metal complexes in a single, larger entity may provide enhanced properties. Among the nanometric objects suitable for such purpose are dendrimers, precisely engineered hyperbranched macromolecules, which are outstanding candidates for improving therapy and diagnosis. In this review article, we present an overview of the use of a particular Schiff base, namely pyridine–imine, linked to the surface of dendrimers, suitable for complexing copper, and the use of such dendrimer complexes in biology, in particular against cancers.