bluuebunny/crossref_metadata_2025 huggingface dataset:
Primary Joint Statistical Seismic Influence on Ionospheric Parameters Recorded by the CSES and DEMETER Satellites
Authors: Li Mei , Shen Xuhui , Parrot Michel , Zhang Xuemin , Zhang Yan , Yu Chen , Yan Rui , Liu Dapeng , Lu Hengxin , Guo Feng , Huang Jianping
Published: November 2020

Oppositely to a previous statistical work using a single time resolution of the total ion density measured onboard the Detection of Electro‐Magnetic Emissions Transmitted from Earthquake Regions (DEMETER) satellite, this work deals with statistical seismo‐ionospheric influences by comparing different parameters and various time resolutions. The O+ density and electron density recorded by the China Seismo‐Electromagnetic Satellite (CSES) for more than one year and by the DEMETER satellite for about 6.5 years have been utilized to globally search ionospheric perturbations with different time resolutions. A comparison is automatically done by software between the occurrence of these ionospheric perturbations determined by different data sets, and the occurrence of earthquakes under the conditions that these perturbations occur at less than 1,500 km and up to 15 days before the earthquakes. Combined with statistical results given by both satellites, it is shown that the detection rate r of earthquakes increases as the data time resolution and the earthquake magnitude increase and as the focal depth decreases. On average, the number of perturbations is higher the day of the earthquake, and then smoothly decreases the days before, which is independent of either ionospheric parameters or time resolutions. The number of right alarms is high near the South Atlantic Magnetic Anomaly area but its relationship with seismic activities is weak. The ion density tends to be more sensitive to seismic activities than the electron density but this needs further investigations. This study shows that the CSES could effectively register ionospheric perturbations due to strong EQs as the DEMETER satellite does.
Magnetic Anisotropy of Rocks: A New Classification of Inverse Magnetic Fabrics to Help Geological Interpretations
Authors: Černý J. , Melichar R. , Všianský D. , Drahokoupil J.
Published: November 2020

Inverse magnetic fabrics defined by anisotropy of magnetic susceptibility with the longest principal axis perpendicular to bedding were identified in the studied samples of Ordovician sedimentary rocks from the Barrandian area, Czech Republic. These fabrics are related to ankerite fibers in association with cone‐in‐cone structures. To understand the meaning of such inverse magnetic fabrics for geological interpretations, a new, more detailed classification of inverse magnetic fabrics' types is formulated in this paper. Distinguishing the structural (i.e., shape) and magnetocrystalline anisotropies in rocks, three new (sub)types of magnetic fabrics were defined in this study based on the combination of structural normal/inverse and magnetocrystalline normal/inverse anisotropies. As a result, normal magnetic fabric is extended by new fabric types associated with inverse anisotropy: simple inverse, pure inverse, and pseudo‐normal magnetic fabrics. The studied fibrous ankerite shows simple inverse magnetic fabric, which results from the combination of normal magnetocrystalline and inverse structural anisotropies.
Atlantic Meridional Overturning Circulation: Reviews of Observational and Modeling Advances—An Introduction
Authors: Srokosz Meric , Danabasoglu Gokhan , Patterson Michael
Published: November 2020

This article provides a brief overview of AMOC science organized collaboratively between the UK RAPID and US AMOC Programs (with partners internationally) during the past 16 years as reflected in the set of synthesis and review articles in the AGU special issue entitled “Atlantic Meridional Overturning Circulation: Reviews of Observational and Modeling Advances.” The article highlights the programs' initial motivations and summarizes the successful implementation of the pan‐Atlantic AMOC observing system, efforts to assess the state, variability, and changes in AMOC, advances in understanding AMOC variability mechanisms and predictability, and illumination of AMOC impacts on global and regional climate, sea level, and ecosystems.
Novel resonant pressure sensor based on piezoresistive detection and symmetrical in-plane mode vibration
Authors: Han Xiangguang , Mao Qi , Zhao Libo , Li Xuejiao , Wang Li , Yang Ping , Lu Dejiang , Wang Yonglu , Yan Xin , Wang Songli , Zhu Nan , Jiang Zhuangde
Published: November 2020

In this paper, a novel resonant pressure sensor is developed based on electrostatic excitation and piezoresistive detection. The measured pressure applied to the diaphragm will cause the resonant frequency shift of the resonator. The working mode stress–frequency theory of a double-ended tuning fork with an enhanced coupling beam is proposed, which is compatible with the simulation and experiment. A unique piezoresistive detection method based on small axially deformed beams with a resonant status is proposed, and other adjacent mode outputs are easily shielded. According to the structure design, high-vacuum wafer-level packaging with different doping in the anodic bonding interface is fabricated to ensure the high quality of the resonator. The pressure sensor chip is fabricated by dry/wet etching, high-temperature silicon bonding, ion implantation, and wafer-level anodic bonding. The results show that the fabricated sensor has a measuring sensitivity of ~19 Hz/kPa and a nonlinearity of 0.02% full scale in the pressure range of 0–200 kPa at a full temperature range of −40 to 80 °C. The sensor also shows a good quality factor >25,000, which demonstrates the good vacuum performance. Thus, the feasibility of the design is a commendable solution for high-accuracy pressure measurements.
Critical roles of FAM134B in ER-phagy and diseases
Authors: Mo Jie , Chen Jin , Zhang Bixiang
Published: November 2020

FAM134B (also called JK-1, RETREG1), a member of the family with sequence similarity 134, was originally discovered as an oncogene in esophageal squamous cell carcinoma. However, its most famous function is that of an ER-phagy-regulating receptor. Over the decades, the powerful biological functions of FAM134B were gradually revealed. Overwhelming evidence indicates that its dysfunction is related to pathophysiological processes such as neuropathy, viral replication, inflammation, and cancer. This review describes the biological functions of FAM134B, focusing on its role in ER-phagy. In addition, we summarize the diseases in which it is involved and review the underlying mechanisms.
Regulation of p53 by the 14-3-3 protein interaction network: new opportunities for drug discovery in cancer
Authors: Falcicchio Marta , Ward Jake A. , Macip Salvador , Doveston Richard G.
Published: November 2020

Most cancers evolve to disable the p53 pathway, a key tumour suppressor mechanism that prevents transformation and malignant cell growth. However, only ~50% exhibit inactivating mutations of p53, while in the rest its activity is suppressed by changes in the proteins that modulate the pathway. Therefore, restoring p53 activity in cells in which it is still wild type is a highly attractive therapeutic strategy that could be effective in many different cancer types. To this end, drugs can be used to stabilise p53 levels by modulating its regulatory pathways. However, despite the emergence of promising strategies, drug development has stalled in clinical trials. The need for alternative approaches has shifted the spotlight to the 14-3-3 family of proteins, which strongly influence p53 stability and transcriptional activity through direct and indirect interactions. Here, we present the first detailed review of how 14-3-3 proteins regulate p53, with special emphasis on the mechanisms involved in their binding to different members of the pathway. This information will be important to design new compounds that can reactivate p53 in cancer cells by influencing protein–protein interactions. The intricate relationship between the 14-3-3 isoforms and the p53 pathway suggests that many potential drug targets for p53 reactivation could be identified and exploited to design novel antineoplastic therapies with a wide range of applications.
A cellulose synthase-derived enzyme catalyses 3-O-glucuronosylation in saponin biosynthesis
Authors: Chung Soo Yeon , Seki Hikaru , Fujisawa Yukiko , Shimoda Yoshikazu , Hiraga Susumu , Nomura Yuhta , Saito Kazuki , Ishimoto Masao , Muranaka Toshiya
Published: November 2020

Triterpenoid saponins are specialised metabolites distributed widely in the plant kingdom that consist of one or more sugar moieties attached to triterpenoid aglycones. Despite the widely accepted view that glycosylation is catalysed by UDP-dependent glycosyltransferase (UGT), the UGT which catalyses the transfer of the conserved glucuronic acid moiety at the C-3 position of glycyrrhizin and various soyasaponins has not been determined. Here, we report that a cellulose synthase superfamily-derived glycosyltransferase (CSyGT) catalyses 3-O-glucuronosylation of triterpenoid aglycones. Gene co-expression analyses of three legume species (Glycyrrhiza uralensis, Glycine max, and Lotus japonicus) reveal the involvement of CSyGTs in saponin biosynthesis, and we characterise CSyGTs in vivo using Saccharomyces cerevisiae. CSyGT mutants of L. japonicus do not accumulate soyasaponin, but the ectopic expression of endoplasmic reticulum membrane–localised CSyGTs in a L. japonicus mutant background successfully complement soyasaponin biosynthesis. Finally, we produced glycyrrhizin de novo in yeast, paving the way for sustainable production of high-value saponins.
Predictive design of sigma factor-specific promoters
Authors: Van Brempt Maarten , Clauwaert Jim , Mey Friederike , Stock Michiel , Maertens Jo , Waegeman Willem , De Mey Marjan
Published: November 2020

To engineer synthetic gene circuits, molecular building blocks are developed which can modulate gene expression without interference, mutually or with the host’s cell machinery. As the complexity of gene circuits increases, automated design tools and tailored building blocks to ensure perfect tuning of all components in the network are required. Despite the efforts to develop prediction tools that allow forward engineering of promoter transcription initiation frequency (TIF), such a tool is still lacking. Here, we use promoter libraries of E. coli sigma factor 70 (σ70)- and B. subtilis σB-, σF- and σW-dependent promoters to construct prediction models, capable of both predicting promoter TIF and orthogonality of the σ-specific promoters. This is achieved by training a convolutional neural network with high-throughput DNA sequencing data from fluorescence-activated cell sorted promoter libraries. This model functions as the base of the online promoter design tool (ProD), providing tailored promoters for tailored genetic systems.
Size-dependent strong metal-support interaction in TiO2 supported Au nanocatalysts
Authors: Du Xiaorui , Huang Yike , Pan Xiaoli , Han Bing , Su Yang , Jiang Qike , Li Mingrun , Tang Hailian , Li Gao , Qiao Botao
Published: November 2020

The strong metal-support interaction (SMSI) has long been studied in heterogonous catalysis on account of its importance in stabilizing active metals and tuning catalytic performance. As a dynamic process taking place at the metal-support interface, the SMSI is closely related to the metal surface properties which are usually affected by the size of metal nanoparticles (NPs). In this work we report the discovery of a size effect on classical SMSI in Au/TiO2 catalyst where larger Au particles are more prone to be encapsulated than smaller ones. A thermodynamic equilibrium model was established to describe this phenomenon. According to this finding, the catalytic performance of Au/TiO2 catalyst with uneven size distribution can be improved by selectively encapsulating the large Au NPs in a hydrogenation reaction. This work not only brings in-depth understanding of the SMSI phenomenon and its formation mechanism, but also provides an alternative approach to refine catalyst performance.
Recent developments of advanced micro-supercapacitors: design, fabrication and applications
Authors: Bu Fan , Zhou Weiwei , Xu Yihan , Du Yu , Guan Cao , Huang Wei
Published: November 2020

The rapid development of wearable, highly integrated, and flexible electronics has stimulated great demand for on-chip and miniaturized energy storage devices. By virtue of their high power density and long cycle life, micro-supercapacitors (MSCs), especially those with interdigital structures, have attracted considerable attention. In recent years, tremendous theoretical and experimental explorations have been carried out on the structures and electrode materials of MSCs, aiming to obtain better mechanical and electrochemical properties. The high-performance MSCs can be used in many fields, such as energy storage and medical assistant examination. Here, this review focuses on the recent progress of advanced MSCs in fabrication strategies, structural design, electrode materials design and function, and integrated applications, where typical examples are highlighted and analyzed. Furthermore, the current challenges and future development directions of advanced MSCs are also discussed.
Dogs accurately track a moving object on a screen and anticipate its destination
Authors: Völter Christoph J. , Karl Sabrina , Huber Ludwig
Published: November 2020

The prediction of upcoming events is of importance not only to humans and non-human primates but also to other animals that live in complex environments with lurking threats or moving prey. In this study, we examined motion tracking and anticipatory looking in dogs in two eye-tracking experiments. In Experiment 1, we presented pet dogs (N = 14) with a video depicting how two players threw a Frisbee back and forth multiple times. The horizontal movement of the Frisbee explained a substantial amount of variance of the dogs’ horizontal eye movements. With increasing duration of the video, the dogs looked at the catcher before the Frisbee arrived. In Experiment 2, we showed the dogs (N = 12) the same video recording. This time, however, we froze and rewound parts of the video to examine how the dogs would react to surprising events (i.e., the Frisbee hovering in midair and reversing its direction). The Frisbee again captured the dogs’ attention, particularly when the video was frozen and rewound for the first time. Additionally, the dogs looked faster at the catcher when the video moved forward compared to when it was rewound. We conclude that motion tracking and anticipatory looking paradigms provide promising tools for future cognitive research with canids.
Using a bio-scanner and 3D printing to create an innovative custom made approach for the management of complex entero-atmospheric fistulas
Authors: Durán Muñoz-Cruzado Virginia , Calero Castro Francisco José , Padillo Eguía Andrés , Tallón Aguilar Luis , Tinoco González José , Puyana Juan Carlos , Pareja Ciuró Felipe , Padillo-Ruiz Javier
Published: November 2020

Enteroatmospheric fistulae are challenging clinical conditions that require surgical expertise and that can result in chronic debilitating conditions placing the patient in a vicious cycle characterized by non healing wounds and malnutrition. They are a complex entity that presents great variability depending on the number, shape, and size of the fistulous orifices, their debit, and the dimensions of the wound. This means that, at present, there is no device that adapts to the anatomical characteristics of each patient and manages to control the spillage of intestinal effluvium from the wound. The aim of this study is to describe the manufacturing technique and to assess the preliminary results of a custom device designed through bioscanner imaging and manufactured using 3D printing for use with negative pressure wound therapy (NPWT) in the management of enteroatmospheric fistula. A proof of concept is given, and the design of the device is presented for the first time. After obtaining images of each fistula with a bioscanner, a personalised device was designed for each patient by 3D printing shape of a prism and a hollow base, taking into account the dimensions of the fistulous area in order to perform a floating ostomy to isolate the wound from the debit enteric. The polycaprolactone (PCL) device was placed including inside the fistulous surface and surrounding it with the NPWT system in order to accelerate wound healing.
The ambiguity of nestedness under soft and hard constraints
Authors: Bruno Matteo , Saracco Fabio , Garlaschelli Diego , Tessone Claudio J. , Caldarelli Guido
Published: November 2020

Many real networks feature the property of nestedness, i.e. the neighbours of nodes with a few connections are hierarchically nested within the neighbours of nodes with more connections. Despite the abstract simplicity of this notion, various mathematical definitions of nestedness have been proposed, sometimes giving contrasting results. Moreover, there is an ongoing debate on the statistical significance of nestedness, since random networks where the number of connections (degree) of each node is fixed to its empirical value are typically as nested as real ones. By using only ergodic and unbiased null models, we propose a clarification that exploits the recent finding that random networks where the degrees are enforced as hard constraints (microcanonical ensembles) are thermodynamically different from random networks where the degrees are enforced as soft constraints (canonical ensembles). Indeed, alternative definitions of nestedness can be negatively correlated in the microcanonical one, while being positively correlated in the canonical one. This result disentangles distinct notions of nestedness captured by different metrics and highlights the importance of making a principled choice between hard and soft constraints in null models of ecological networks.
Interoception is associated with the impact of eye contact on spontaneous facial mimicry
Authors: Imafuku Masahiro , Fukushima Hirokata , Nakamura Yuko , Myowa Masako , Koike Shinsuke
Published: November 2020

Interoception (perception of one’s own physiological state) has been suggested to underpin social cognition, although the mechanisms underlying this association remain unclear. The current study aimed to elucidate the relationship between interoception and two factors underlying social cognition: self-other boundary and sensitivity to social cues. We measured performance in a heartbeat perception task as an index of interoceptive accuracy (IAc), the frequency of spontaneous facial mimicry (SFM) as an index of self-other boundary, and the degree of the effect of eye contact on SFM (difference in SFM between conditions in which models’ eyes were directed to and averted from participants) as an index of social-cue sensitivity, and tested correlations among these measures. The results revealed that IAc and SFM were positively correlated only in the direct gaze condition. The extent of the effect of eye contact on SFM (difference in frequency between direct vs. averted conditions) was positively correlated with IAc. These overall findings were also observed in separate analyses of male and female participant groups, supporting the robustness of the findings. The results suggest that interoception is related to sensitivity to social cues, and may also be related to the self-other boundary with modulation by social context.
Fusobacterium nucleatum in biopsied tissues from colorectal cancer patients and alcohol consumption in Korea
Authors: Kim Myungsook , Lee Seung-Tae , Choi Songyi , Lee Hyukmin , Kwon Sun Sung , Byun Jung Hyun , Kim Young Ah , Rhee Ki-Jong , Choi Jong Rak , Kim Tae Il , Lee Kyungwon
Published: November 2020

The roles of individual bacteria and their relationship in the development of colorectal cancer (CRC) remain unclear. We aimed to determine the prevalence of CRC-associated bacteria using quantitative real-time PCR (qPCR) or 16S rRNA analysis and the statistical correlations of patient demographics and clinical characteristics comprising alcohol consumption with CRC-associated bacteria. We determined the prevalence of five CRC-associated bacterial species in 38 CRC patients (39 samples) and 21 normal individuals using qPCR, and the relative abundance of bacterial taxa in the gut microbiome was assessed using 16S rRNA analysis. Fusobacterium nucleatum was the only bacterium that was significantly (P < 0.0001) more prevalent in the cancer tissue (82.1%) than in the normal tissue (0%) by qPCR. 16S rRNA analysis showed a significant correlation between six operational taxonomic units (OTUs), namely, the genera Fusobacterium, Peptostreptococcus, Collinsella, Prevotella, Parvimonas, and Gemella, in patients with CRC. An integrated analysis using 16S rRNA data and epidemiological characteristics showed that alcohol consumption was significantly correlated with the abundance of Fusobacterium OTUs. The correlation of alcohol consumption with the abundance of Fusobacterium OTUs in cancer tissue discovered using 16S rRNA analysis suggests a possible link between alcohol metabolism and subsequent tumorigenesis caused by F. nucleatum.
Development and in vitro validation of flexible intraretinal probes
Authors: Rincón Montes V. , Gehlen J. , Ingebrandt S. , Mokwa W. , Walter P. , Müller F. , Offenhäusser A.
Published: November 2020

The efforts to improve the treatment efficacy in blind patients with retinal degenerative diseases would greatly benefit from retinal activity feedback, which is lacking in current retinal implants. While the door for a bidirectional communication device that stimulates and records intraretinally has been opened by the recent use of silicon-based penetrating probes, the biological impact induced by the insertion of such rigid devices is still unknown. Here, we developed for the first time, flexible intraretinal probes and validated in vitro the acute biological insertion impact in mouse retinae compared to standard silicon-based probes. Our results show that probes based on flexible materials, such as polyimide and parylene-C, in combination with a narrow shank design 50 µm wide and 7 µm thick, and the use of insertion speeds as high as 187.5 µm/s will successfully penetrate the retina, reduce the footprint of the insertion to roughly 2 times the cross-section of the probe, and induce low dead cell counts, while keeping the vitality of the tissue and recording the neural activity at different depths.
Haptic human–human interaction does not improve individual visuomotor adaptation
Authors: Beckers Niek , van Asseldonk Edwin H. F. , van der Kooij Herman
Published: November 2020

Haptic interaction between two humans, for example, a physiotherapist assisting a patient regaining the ability to grasp a cup, likely facilitates motor skill acquisition. Haptic human–human interaction has been shown to enhance individual performance improvement in a tracking task with a visuomotor rotation perturbation. These results are remarkable given that haptically assisting or guiding an individual rarely benefits their individual improvement when the assistance is removed. We, therefore, replicated a study that reported that haptic interaction between humans was beneficial for individual improvement for tracking a target in a visuomotor rotation perturbation. In addition, we tested the effect of more interaction time and a stronger haptic coupling between the partners on individual improvement in the same task. We found no benefits of haptic interaction on individual improvement compared to individuals who practised the task alone, independent of interaction time or interaction strength.
Uncovered self-expandable metal stents for the treatment of refractory benign colorectal anastomotic stricture
Authors: Hong Ji Taek , Kim Tae Jun , Hong Sung Noh , Kim Young-Ho , Chang Dong Kyung , Kim Eun Ran
Published: November 2020

Self-expandable metal stent (SEMS) placement has been suggested as a therapeutic modality for treating benign colorectal strictures. Covered stents are generally used, given the concerns regarding the efficacy and safety of uncovered stents. Hence, few studies have evaluated the efficacy and safety of uncovered SEMSs (UCSEMSs) in patients with refractory benign colorectal anastomotic strictures. In this study, 12 patients with postoperative benign symptomatic anastomotic strictures refractory to pneumatic dilation (range, 2–9) and transient indwelling-covered SEMSs were treated using UCSEMS. All enrolled patients were men (mean age, 61 years). Stent placement was successful in all 12 patients, and early clinical success was achieved in 11 (92%) patients. Four patients (25%) showed successful clinical outcomes without further intervention, but eight patients (75%) were clinically unsuccessful, and showed stricture recurrence or functional obstructive symptoms. Three patients underwent surgery, and the remaining five patients required repeat stent procedures. Despite the high reobstruction rate, the median follow-up period after UCSEMS placement was 16.7 months, demonstrating that UCSEMS may be able to achieve medium-term symptom relief without any complications. Therefore, UCSEMS may be an alternative option in exceptional circumstances in carefully selected patients, where invasive surgical treatments, such as stoma diversion, are not an option, thereby improving patients’ quality of life.
A meta-analysis of the effect of binge drinking on the oral microbiome and its relation to Alzheimer’s disease
Authors: Yussof Ayuni , Yoon Paul , Krkljes Cayley , Schweinberg Sarah , Cottrell Jessica , Chu Tinchun , Chang Sulie L.
Published: November 2020

The diversity of bacterial species in the oral cavity makes it a key site for research. The close proximity of the oral cavity to the brain and the blood brain barrier enhances the interest to study this site. Changes in the oral microbiome are linked to multiple systemic diseases. Alcohol is shown to cause a shift in the microbiome composition. This change, particularly in the oral cavity, may lead to neurological diseases. Alzheimer’s disease (AD) is a common neurodegenerative disorder that may cause irreversible memory loss. This study uses the meta-analysis method to establish the link between binge drinking, the oral microbiome and AD. The QIAGEN Ingenuity Pathway Analysis (IPA) shows that high levels of ethanol in binge drinkers cause a shift in the microbiome that leads to the development of AD through the activation of eIF2, regulation of eIF4 and p70S6K signaling, and mTOR signaling pathways. The pathways associated with both binge drinkers and AD are also analyzed. This study provides a foundation that shows how binge drinking and the oral microbiome dysbiosis lead to permeability changes in the blood brain barrier (BBB), which may eventually result in the pathogenesis of AD.
A theoretical design method for the nozzle pitch of air-flotation system to reduce large liquid crystal display glass substrate’s deformation
Authors: Huang Bin , Fu Teng , Xu Xiao-bo , Chen Mei-xian , Zhou Yang , Zhang Yong , Liu Shan-lin
Published: November 2020

The deformation of large glass substrate in air-flotation system affects detection accuracy of inspection instrument. According to the gas lubrication theory, Timoshenko’s thin film theory and the simulation figure of the pressure distribution of the air film flow field, the air load distribution model of the air film is established, and the deformation expression of the large liquid crystal glass substrate in air-flotation system is given. On this basis, a theoretical design method for designing nozzle pitch of orifice throttling air-flotation system was proposed. Combined with examples, the results of theories and simulation are compared. An experiment on the deformation of the glass substrate was carried out on an experimental prototype. The difference between the experimental results and the theoretical results does not exceed 10%.
Generating synthetic aging trajectories with a weighted network model using cross-sectional data
Authors: Farrell Spencer , Mitnitski Arnold , Rockwood Kenneth , Rutenberg Andrew
Published: November 2020

We develop a computational model of human aging that generates individual health trajectories with a set of observed health attributes. Our model consists of a network of interacting health attributes that stochastically damage with age to form health deficits, leading to eventual mortality. We train and test the model for two different cross-sectional observational aging studies that include simple binarized clinical indicators of health. In both studies, we find that cohorts of simulated individuals generated from the model resemble the observed cross-sectional data in both health characteristics and mortality. We can generate large numbers of synthetic individual aging trajectories with our weighted network model. Predicted average health trajectories and survival probabilities agree well with the observed data.
Cretaceous amniote integuments recorded through a taphonomic process unique to resins
Authors: Álvarez-Parra Sergio , Delclòs Xavier , Solórzano-Kraemer Mónica M. , Alcalá Luis , Peñalver Enrique
Published: November 2020

Fossil records of vertebrate integuments are relatively common in both rocks, as compressions, and amber, as inclusions. The integument remains, mainly the Mesozoic ones, are of great interest due to the panoply of palaeobiological information they can provide. We describe two Spanish Cretaceous amber pieces that are of taphonomic importance, one bearing avian dinosaur feather remains and the other, mammalian hair. The preserved feather remains originated from an avian dinosaur resting in contact with a stalactite-shaped resin emission for the time it took for the fresh resin to harden. The second piece shows three hair strands recorded on a surface of desiccation, with the characteristic scale pattern exceptionally well preserved and the strands aligned together, which can be considered the record of a tuft. These assemblages were recorded through a rare biostratinomic process we call “pull off vestiture” that is different from the typical resin entrapment and embedding of organisms and biological remains, and unique to resins. The peculiarity of this process is supported by actualistic observations using sticky traps in Madagascar. Lastly, we reinterpret some exceptional records from the literature in the light of that process, thus bringing new insight to the taphonomic and palaeoecological understanding of the circumstances of their origins.
Similarities and differences between the ‘cytokine storms’ in acute dengue and COVID-19
Authors: Dayarathna Shashika , Jeewandara Chandima , Gomes Laksiri , Somathilaka Gayasha , Jayathilaka Deshni , Vimalachandran Vimalahan , Wijewickrama Ananda , Narangoda Eranga , Idampitiya Damayanthi , Ogg Graham S. , Malavige Gathsaurie Neelika
Published: November 2020

Severe pneumonia and multiorgan dysfunction in COVID-19 and dengue haemorrhagic fever (DHF) are two diseases that can associate with an altered immune response to the infecting virus. To determine the similarities and differences in the cytokine and chemokine responses in these two infections, we compared responses in patients with varying severity of COVID-19 and acute dengue at different time points of illness. During early disease, patients who proceeded to develop COVID-19 severe pneumonia (SP) and DHF had significantly higher levels of IL-6, IL-10 and MIP3α than those who developed mild illness. The lowest levels of IFNγ in early illness were seen in those who succumbed to their illness due to COVID-19. Levels of serum IL-10 (p = 0.0001), IL-6 (p = 0.002), MIP-3α (p = 0.02) and CD40-L levels (p = 0.002) significantly increased from 5 to 9 day of illness to 10–21 day of illness in patients with moderate-to-severe COVID-19, but not in those with mild illness. In contrast, these cytokine/chemokine levels remained unchanged in those with DHF or dengue fever (DF) during febrile and critical phases. Although IL-10 levels were significantly higher in COVID-19 patients with SP, patients with DHF had 25-fold higher levels, whereas IL-6 levels were 11-fold higher in those with COVID-19 SP. IL-10 and other cytokines were evaluated in a larger cohort of patients during early illness (≤ 4 days) who proceeded to develop DF (n = 71) or DHF (n = 64). Of the cytokines evaluated, IL-10 was significantly higher (p < 0.0001) in those who went on to develop DHF compared to DF. Low IFNγ response to the SARS-CoV2 and high levels of immunosuppressive IL-10 in both COVID-19 and dengue during early illness are indicators of an altered antiviral response potentially contributing to disease severity.
First freshwater mussel-associated piscicolid leech from East Asia
Authors: Bolotov Ivan N. , Klass Anna L. , Konopleva Ekaterina S. , Bespalaya Yulia V. , Gofarov Mikhail Yu. , Kondakov Alexander V. , Vikhrev Ilya V.
Published: November 2020

Parasites and symbionts of freshwater mussels are poorly understood, although a diverse assemblage of mussel-associated leeches (Glossiphoniidae) was recently described. Here, we report on the discovery of a fish leech (Piscicolidae) in the mantle cavity of the freshwater mussel Cristaria plicata (Unionidae) in the Russian Far East. It is the first member of this leech family being associated with freshwater molluscs. This leech does not match any known genus and species both morphologically and genetically, and is described here as Alexandrobdella makhrovigen. & sp. nov. It uses mussels as shelter (and probably as a secondary host), while the Amur catfish Silurus asotus (Siluridae) seems to be the primary host. These novel findings indicate that mussel-associated leech assemblage contains at least one piscicolid species. Our fossil-calibrated phylogeny suggests that the crown group of Piscicolidae was originated in the Early Cretaceous. This primarily marine family shares at least five independent colonization events into freshwater environments.
Path-based extensions of local link prediction methods for complex networks
Authors: Aziz Furqan , Gul Haji , Uddin Irfan , Gkoutos Georgios V.
Published: November 2020

Link prediction in a complex network is a problem of fundamental interest in network science and has attracted increasing attention in recent years. It aims to predict missing (or future) links between two entities in a complex system that are not already connected. Among existing methods, local similarity indices are most popular that take into account the information of common neighbours to estimate the likelihood of existence of a connection between two nodes. In this paper, we propose global and quasi-local extensions of some commonly used local similarity indices. We have performed extensive numerical simulations on publicly available datasets from diverse domains demonstrating that the proposed extensions not only give superior performance, when compared to their respective local indices, but also outperform some of the current, state-of-the-art, local and global link-prediction methods.
Toll-like receptor 4 regulates intestinal fibrosis via cytokine expression and epithelial-mesenchymal transition
Authors: Jun Yu Kyung , Kwon So Hyun , Yoon Hee Tae , Park Hyunsun , Soh Hosim , Lee Hyun Jung , Im Jong Pil , Kim Joo Sung , Kim Ji Won , Koh Seong-Joon
Published: November 2020

Intestinal fibrosis induced by chronic and recurrent colitis, which is exacerbated by bowel stenosis, stricture, and obstruction, is challenging to treat. Toll-like receptor 4 (TLR4) stimulates innate and acquired immunity in response to specific microbial components, but the role of TLR4 in intestinal fibrosis is largely unknown. We investigated its role in intestinal fibrosis using not only a murine fibrosis model but also human myofibroblasts and intestinal epithelial cells. Colon fibrosis was induced in TLR4-deficient (TLR4−/−) mice and its wild-type counterparts with 3% dextran sulfate sodium. Absence of TLR4 gene attenuated chronic inflammation and colonic macrophages infiltration; intestinal fibrosis and collagen deposition were suppressed. Also, the production of tumor necrosis factor-α, interleukin-12p40, and transforming growth factor-β was reduced in TLR4-deficient peritoneal macrophages. TLR4 was silenced in CCD-18Co cells by small interfering RNA (siRNA), and matrix metalloproteinase-1, tissue inhibitor of metalloproteinase, and collagen α1 expression was evaluated. Role of TLR4 in epithelial-mesenchymal transition (EMT) was evaluated in HCT116 cells. Suppression of TLR4 transcription by siRNAs affected myofibroblasts activity, collagen synthesis, and EMT in the human cancer cell line. Thus, we suggest that TLR4 can be an essential mediator in intestinal chronic inflammation and fibrosis, indicating that TLR4 signaling is a potential therapeutic target for intestinal fibrosis.
Relationship between cell number and clinical outcomes of autologous bone-marrow mononuclear cell implantation in critical limb ischemia
Authors: Yusoff Farina Mohamad , Kajikawa Masato , Takaeko Yuji , Kishimoto Shinji , Hashimoto Haruki , Maruhashi Tatsuya , Nakashima Ayumu , Wahid S. Fadilah S. Abdul , Higashi Yukihito
Published: November 2020

Cell therapy using intramuscular injections of autologous bone-marrow mononuclear cells (BM-MNCs) improves clinical symptoms and can prevent limb amputation in atherosclerotic peripheral arterial disease (PAD) patients with critical limb ischemia (CLI). The purpose of this study was to evaluate the effects of the number of implanted BM-MNCs on clinical outcomes in atherosclerotic PAD patients with CLI who underwent cell therapy. This study was a retrospective observational study with median follow-up period of 13.5 years (range, 6.8–15.5 years) from BM-MNC implantation procedure. The mean number of implanted cells was 1.2 ± 0.7 × 109 per limb. There was no significant difference in number of BM-MNCs implanted between the no major amputation group and major amputation group (1.1 ± 0.7 × 109 vs. 1.5 ± 0.8 × 109 per limb, P = 0.138). There was also no significant difference in number of BM-MNCs implanted between the no death group and death group (1.5 ± 0.9 × 109 vs. 1.8 ± 0.8 × 109 per patient, P = 0.404). Differences in the number of BM-MNCs (mean number, 1.2 ± 0.7 × 109 per limb) for cell therapy did not alter the major amputation-free survival rate or mortality rate in atherosclerotic PAD patients with CLI. A large number of BM-MNCs will not improve limb salvage outcome or mortality.
Resistance training decreases plasma levels of adipokines in postmenopausal women
Authors: Ward Liam J. , Nilsson Sigrid , Hammar Mats , Lindh-Åstrand Lotta , Berin Emilia , Lindblom Hanna , Spetz Holm Anna-Clara , Rubér Marie , Li Wei
Published: November 2020

Physical inactivity and the onset of menopause increase the risk of cardiovascular disease amongst postmenopausal women. We aim to investigate the effect of resistance training (RT) on plasma levels of selected cytokines, adipokines, myokines, and sex hormones in postmenopausal women with vasomotor symptoms. This was a sub-study of a randomised controlled trial investigating the effects of RT on vasomotor symptoms in postmenopausal women. Women were randomised to join a 15-week RT program (n = 26) or remain sedentary as control (n = 29). Venous blood samples were taken at week-0 and week-15 for all participants. Enzyme-linked immunosorbent assays and multiple bead assays were used to measure cytokines, adipokines, myokines, and sex hormones in plasma. Plasma measurements of 16 of 33 analytes were within detectable limits. After adjusting for good compliance in the RT group (58% of RT participants), after 15 weeks, significantly lower plasma levels of adiponectin (p < 0.001), lipocalin-2 (p < 0.01) and resistin (p = 0.04) were found. Comparing control and RT women, using change-over-time values, significant increases in median testosterone and sex hormone binding globulin levels were seen in RT women. RT intervention lowers the levels of adipokines, particularly adiponectin, in postmenopausal women with vasomotor symptoms. These results were secondary outcomes of a clinical trial, and further investigations in a larger cohort are essential with the additional control of diet control and body composition analyses. Nevertheless, our study shows RT may be a beneficial intervention in reducing inflammation amongst postmenopausal women.
Too anxious to control: the relation between math anxiety and inhibitory control processes
Authors: Van den Bussche E. , Vanmeert K. , Aben B. , Sasanguie D.
Published: November 2020

Based on the attentional control theory, math anxiety has been explained in terms of impaired inhibition, a key cognitive control function associated with the central executive. Inhibition allows us to suppress task-irrelevant interference when needed. Inspired by the Dual Mechanisms of Control theory, the current study aimed to disentangle the effect of math anxiety on two cognitive control aspects that can be identified in inhibition. Reactive control occurs after interference is detected and is mostly used in a context where interference is scarce. Proactive control is used to prevent and anticipate interference before it occurs and is preferred in contexts where interference is frequent. We used an arrow flanker task where the proportion of interference was manipulated to stimulate the use of a reactive or proactive control strategy. The results showed that response times on trials containing interference increased with math anxiety, but only in a reactive task context. In a proactive task context response times were not influenced by math anxiety. Our results suggest that math anxiety impairs reactive control. We hypothesize that this finding can be explained by a higher state of distractibility, triggered both by the reactive context and by math anxiety.
Application of Neutral Electrolyzed Water on pork chops and its impact on meat quality
Authors: Torres-Rosales Erwin , Rivera-Garcia Andres , Rosario-Perez Patricia Janet , Ramirez-Orejel Juan Carlos , Paez-Esquiliano David , Martinez-Vidal Sandra , Guzman-Olea Eduardo , Cano-Buendia Jose Alberto
Published: November 2020

Physicochemical and microbiological properties of pork chops sprayed with Neutral Electrolyzed Water (NEW) were evaluated during storage at refrigeration temperature. Pork chops were randomly allocated into three groups and were artificially contaminated with an inoculum of 106 CFU/mL of Listeria monocytogenes. Each group was treated with either NEW (58 ppm), NaClO (35 ppm), or saline solution (SS). Subsequently, recovered bacteria were plated on TSA petri dishes and the reduction percentage of Listeria monocytogenes was calculated 24 h and 8 days after treatment. Physicochemical analysis [pH, content of lactic acid, thiobarbituric acid reactive substances (TBARS) and total volatile base nitrogen (TVBN)] were performed to evaluate the effect of all solutions used on pork meat kept at 4 °C for 19 days. In vitro NEW reduced L. monocytogenes titers by > 99.98% and 80.19% and 90.35% in artificially contaminated pork 24 h and 8 days after NEW treatment, respectively. Compared to the SS treatment, NEW and NaClO solutions caused a 0.67 Log UFC/g and 0.65 Log UFC/g reduction respectively. After eight days post-treatment, NEW and NaClO bacterial titers were below the SS treatment. NEW caused little color change in treated meat. It helped to reduce the formation of lactic acid and TVB-N when pork chops are kept at 4 °C for 19 days. Therefore, NEW could be considered as a new alternative to sanitize and preserve pork meat.
Landraces of temperate japonica rice have superior alleles for improving culm strength associated with lodging resistance
Authors: Chigira Koki , Kojima Natsuko , Yamasaki Masanori , Yano Kenji , Adachi Shunsuke , Nomura Tomohiro , Jiang Mingjin , Katsura Keisuke , Ookawa Taiichiro
Published: November 2020

Lodging can reduce grain yield and quality in cereal crops including rice (Oryza sativa L.). To achieve both high biomass production and lodging resistance, the breeding of new cultivars with strong culms is a promising strategy. However, little is known about the diversity of culm strength in temperate japonica rice and underlying genetic factors. Here, we report a wide variation of culm strength among 135 temperate japonica cultivars, and some landraces having the strongest culms among these cultivars. The genome-wide association study (GWAS) identified 55 quantitative trait loci for culm strength and morphological traits, and revealed several candidate genes. The superior allele of candidate gene for culm thickness, OsRLCK191, was found in many landraces but had not inherited to the modern improved cultivars. Our results suggest that landraces of temperate japonica rice have unutilized superior alleles for contributing future improvements of culm strength and lodging resistance.
The long-lasting post-stimulation inhibitory effects of bladder activity induced by posterior tibial nerve stimulation in unanesthetized rats
Authors: Park Eunkyoung , Lee Jae-Woong , Kim Taekyung , Kang Minhee , Cho Baek Hwan , Lee Jiho , Park Sung-Min , Lee Kyu-Sung
Published: November 2020

Tibial nerve stimulation (TNS) is one of the neuromodulation methods used to treat an overactive bladder (OAB). However, the treatment mechanism is not accurately understood owing to significant differences in the results obtained from animal and clinical studies. Thus, this study was aimed to confirm the response of bladder activity to the different stimulation frequencies and to observe the duration of prolonged post-stimulation inhibitory effects following TNS. This study used unanesthetized rats to provide a closer approximation of the clinical setting and evaluated the changes in bladder activity in response to 30 min of TNS at different frequencies. Moreover, we observed the long-term changes of post-stimulation inhibitory effects. Our results showed that bladder response was immediately inhibited after 30 min of 10 Hz TNS, whereas it was excited at 50 Hz TNS. We also used the implantable stimulator to observe a change in duration of the prolonged post-stimulation inhibitory effects of the TNS and found large discrepancies in the time that the inhibitory effect lasted after stimulation between individual animals. This study provides important evidence that can be used to understand the neurophysiological mechanisms underlying the bladder inhibitory response induced by TNS as well as the long-lasting prolonged post-stimulation effect.
Eclogite resembling metamorphic disequilibrium assemblage formed through fluid-induced metasomatic reactions
Authors: Kwon Sanghoon , Samuel Vinod O. , Song Yungoo , Kim Sung Won , Park Seung-Ik , Jang Yirang , Santosh M.
Published: November 2020

Equilibrium omphacite-garnet-bearing mafic rocks have been classified as eclogites, either pristine or retrogressed, that were formed at great depths in the lithosphere. Here we report a unique natural example of eclogite resembling assemblage in disequilibrium formed through fluid-induced metasomatic reactions under the amphibolite to granulite facies. Primarily, the amphibolized protolith experienced a garnet-amphibolite facies metamorphism at ~ 500–700 °C and ~ 0.8–1 GPa. Subsequently, CO2fluid induced fracturing and dissolution-reprecipitation reactions occurred at peak metamorphic conditions of ~ 700 °C and ~ 1 GPa. Occasional omphacite-albite assemblage, which gradually replace diopside-oligoclase symplectite adjacent to albite veins along fractures, indicates fluid-induced coupled dissolution-reprecipitation disequilibrium reactions. Here the albite-omphacite assemblage is in local equilibrium at least on 1 mm length scale, during cooling, below ~ 600 ºC and ~ 1 GPa, within the amphibolite facies conditions. The results from this study clearly suggest that disequilibrium garnet-omphacite assemblage in mafic rocks could be formed by crustal reworking processes below granulite facies conditions, and their textural equilibrium is an important criterion while defining eclogite facies.