bluuebunny/crossref_metadata_2025 huggingface dataset:
Mechanisms of Sodium-Acetate-Induced DHA Accumulation in a DHA-Producing Microalga, Crypthecodinium sp. SUN
Authors: Li Yiming , Tian Weina , Fu Zhongxiang , Ye Wenqi , Zhang Xinwei , Zhang Zhao , Sun Dongzhe
Published: August 2022

Docosahexaenoic acid (DHA) is an omega-3 polyunsaturated fatty acid (PUFA) that is critical for the intelligence and visual development of infants. Crypthecodinium is the first microalga approved by the Food and Drug Administration for DHA production, but its relatively high intracellular starch content restricts fatty acid accumulation. In this study, different carbon sources, including glucose (G), sodium acetate (S) and mixed carbon (M), were used to investigate the regulatory mechanisms of intracellular organic carbon distribution in Crypthecodinium sp. SUN. Results show that glucose favored cell growth and starch accumulation. Sodium acetate limited glucose utilization and starch accumulation but caused a significant increase in total fatty acid (TFA) accumulation and the DHA percentage. Thus, the DHA content in the S group was highest among three groups and reached a maximum (10.65% of DW) at 96 h that was 2.92-fold and 2.24-fold of that in the G and M groups, respectively. Comparative transcriptome analysis showed that rather than the expression of key genes in fatty acids biosynthesis, increased intracellular acetyl-CoA content appeared to be the key regulatory factor for TFA accumulation. Additionally, metabolome analysis showed that the accumulated DHA-rich metabolites of lipid biosynthesis might be the reason for the higher TFA content and DHA percentage of the S group. The present study provides valuable insights to guide further research in DHA production.
Basic Life Support Knowledge among Junior Medical and Dental Students, Communication Channels, and the COVID-19 Pandemic
Authors: Ricci Gaëtan , Herren Tara , Taramarcaz Victor , Schnetzler Nicolas , Dupuis François , Schiffer Eduardo , Suppan Mélanie , Suppan Laurent
Published: August 2022

Background and objective: The prognosis of cardiac arrest victims strongly depends on the prompt provision of Basic Life Support (BLS) maneuvers. Medical students should therefore be proficient in this area, but many lack essential BLS knowledge. The goal of this prospective, closed web-based study was to determine whether a short intervention designed to motivate first-year medical students to follow a blended BLS course could lead to a significant improvement in BLS knowledge in the following year. Materials and Methods: A fully automated web-based questionnaire was administered to second-year medical students one year after they had been given the opportunity of following a blended BLS course (e-learning and practice session). The primary outcome was the difference, on a 6-question score assessing essential BLS knowledge, between these students and those from the 2020 promotion since the latter had not been offered the optional BLS course. Results: The score was similar between the two study periods (3.3 ± 0.8 in 2022 vs. 3.0 ± 1.0 in 2020, p = 0.114), but no firm conclusion could be drawn since participation was much lower than expected (17.9% in 2022 vs. 43.7% in 2020, p < 0.001). Therefore, a second questionnaire was created and administered to understand the reasons underlying this low participation. Conclusions: There was a lack of improvement in BLS knowledge in second-year medical students after the introduction of an optional introductory BLS course in the first-year curriculum, but the limited participation rate precludes drawing definitive conclusions. Ineffective communication appears to be the cause of this low participation rate, but a lack of motivation in the aftermath of the COVID-19 pandemic cannot be ruled out. Corrective actions should be considered to enhance communication, restore motivation, and ultimately improve BLS knowledge among medical and dental students.
Applications of Ionic Liquids in Carboxylic Acids Separation
Authors: Blaga Alexandra Cristina , Tucaliuc Alexandra , Kloetzer Lenuta
Published: August 2022

Ionic liquids (ILs) are considered a green viable organic solvent substitute for use in the extraction and purification of biosynthetic products (derived from biomass—solid/liquid extraction, or obtained through fermentation—liquid/liquid extraction). In this review, we analyzed the ionic liquids (greener alternative for volatile organic media in chemical separation processes) as solvents for extraction (physical and reactive) and pertraction (extraction and transport through liquid membranes) in the downstream part of organic acids production, focusing on current advances and future trends of ILs in the fields of promoting environmentally friendly products separation.
Characteristics of a PVDF–Tin Dioxide Membrane Assisted by Electric Field Treatment
Authors: Nasution Muhammad Syahrul , Mataram Agung , Yani Irsyadi , Septano Gurruh Dwi
Published: August 2022

Polymeric membranes have good properties for filtering water. In this paper, a membrane made from polyvinylidene fluoride (PVDF) polymer with 15 wt%, 17.5 wt%, and 20 wt% polymer content, with the addition of 1 wt% of tin dioxide with electric field treatment, is presented. The electric field used was DC 15,000 V. The membrane was tested to determine its characteristics and properties. The physical properties were examined with a scanning electron microscope, and the mechanical properties of the membrane were tested by tensile testing. The maximum tensile stress was obtained at 0.746 MPa, and the minimum tensile stress was obtained at 0.487 MPa. Microscopic examination of the membrane’s surface identified the shape, the structure of the fibers formed, and the amount of agglomeration. The flow rate, membrane flux, and normalized water permeability (NWP) were tested, using the water treatment performance test to measure the membrane’s filtering ability.
Electron Beam-Melting and Laser Powder Bed Fusion of Ti6Al4V: Transferability of Process Parameters
Authors: Megahed Sandra , Aniko Vadim , Schleifenbaum Johannes Henrich
Published: August 2022

Metal powder bed-based Additive Manufacturing (AM) technologies, such as Electron Beam-Melting (EBM) and Laser Powder Bed Fusion (LPBF), are established in several industries due to the large design freedom and mechanical properties. While EBM and LPBF have similar operating steps, process-specific characteristics influence the component design. The differences in the energy coupling lead to differing solidification conditions, microstructures, and, thus, mechanical properties. The surface finish and geometrical accuracy are also affected. As opposed to LPBF, EBM powder layers are preheated prior to selective melting. In this study, similar volume energy densities in LPBF and EBM were used to manufacture Ti6Al4V test geometries to assess the process transferability. Since the energy coupling of LPBF and EBM differ, heat source absorption was considered when calculating the volume energy density. Even when a similar volume energy density was used, significant differences in the component quality were found in this study due to specific respective process constraints. The extent of these constrains was investigated on voluminous samples and support-free overhanging structures. Overhang angles up to 90° were manufactured with LPBF and EBM, and characterized with regard to the relative density, surface roughness, and geometric compliance.
Microstructural Evolution of the TLP Joints of RAFM Steel during Aging and Creep
Authors: Liu Kun , Li Wenchao , Ding Ran , Liu Chenxi
Published: August 2022

In this study, transient liquid-phase (TLP) bonding was adopted to obtain a reliable reduced-activation ferritic/martensitic (RAFM) steel joint with Fe-Si-B amorphous foil. The aging tests and creep tests of the TLP joints were carried out at 550 °C to study the microstructural evolution in the service process. The effect of stress loading on the microstructural evolution of the TLP joint was investigated. The results show that creep fractures in the TLP joints occur in the base material. The main factors affecting the creep performance of TLP joints are the recovery of substructures and the coarsening and deformation of martensitic laths. In addition, the M23C6 carbides in the base material were coarser than in the weld zone. Compared with aging samples and creep samples undergoing the same test temperature, the dislocation density in the isothermal solidification zone (ISZ) increased significantly with increases in the stress level. Furthermore, it is worth noting that the microstructure of the weld zone changed from large-sized ferrite to a mixed, fine microstructure of ferrite and martensite, which increases the heat resistance of the TLP joints, and thus results in creep fractures in the base metal.
Relationships between Milk and Blood Biochemical Parameters and Metabolic Status in Dairy Cows during Lactation
Authors: Andjelić Biljana , Djoković Radojica , Cincović Marko , Bogosavljević-Bošković Snežana , Petrović Milun , Mladenović Jelena , Čukić Aleksandar
Published: August 2022

This study aimed to determine blood and milk metabolic parameters and their correlations for the purpose of evaluating metabolic status in dairy cows. Blood and milk samples were collected from 100 Holstein dairy cows during morning milking. The cows were allocated to four groups according to the production period, including cows in early (n = 18), full (n = 26), mid (n = 25) and late (n = 31) lactation. The value of non-esterified fatty acids (NEFA), β-hydroxybutyrate (BHB), glucose, triglycerides (TG), total cholesterol (TChol), total protein (TP), albumin, globulin, urea, total bilirubin (TBil), aspartate aminotransferase (AST), alanine aminotransferase (ALT), alkaline phosphatase (ALP), gamma-glutamyl transferase (GGT), and lactate dexydrogenase (LDH) in the blood were determined. The following milk parameters were measured: fat, protein, lactose, urea, AST, ALT, ALP, GGT, LDH and BHB. Blood serum NEFA, BHB, TBil, AST, ALT, ALP and LDH were higher in early lactation cows, whereas glucose, TP, globulin and urea levels were significantly lower in early lactation cows. Milk fat and lactose levels were lower in early lactation cows, whereas milk protein and the activities of AST, ALT, ALP and LDH in milk were highly greater in early lactation cows. Milk fat was positively correlated with glucose, TP and TG, and negatively correlated with BHB, NEFA, TBil, ALT, LDH and ALP levels in the blood. Enzyme activities in milk were positively correlated with those in blood and with blood NEFA, BHB and TBil levels, and negatively correlated with blood glucose, TChol and TG. A significant positive correlation existed between blood and milk BHB values. Many correlations showed the same slope during all lactation periods. In conclusion, similar changes in blood and milk metabolite concentration during lactation and milk to blood correlations confirm that milk has great potential in predicting of blood metabolites and metabolic status of cows.
Correlation of Cerebral Microdialysis with Non-Invasive Diffuse Optical Cerebral Hemodynamic Monitoring during Deep Hypothermic Cardiopulmonary Bypass
Authors: Ko Tiffany S. , Mavroudis Constantine D. , Benson Emilie J. , Forti Rodrigo M. , Melchior Richard W. , Boorady Timothy W. , Morano Vincent C. , Mensah-Brown Kobina , Lin Yuxi , Aronowitz Danielle , Starr Jonathan P. , Rosenthal Tami M. , Shade Brandon C. , Schiavo Kellie L. , White Brian R. , Lynch Jennifer M. , Gaynor J. William , Licht Daniel J. , Yodh Arjun G. , Baker Wesley B. , Kilbaugh Todd J.
Published: August 2022

Neonates undergoing cardiac surgery involving aortic arch reconstruction are at an increased risk for hypoxic-ischemic brain injury. Deep hypothermia is utilized to help mitigate this risk when periods of circulatory arrest are needed for surgical repair. Here, we investigate correlations between non-invasive optical neuromonitoring of cerebral hemodynamics, which has recently shown promise for the prediction of postoperative white matter injury in this patient population, and invasive cerebral microdialysis biomarkers. We compared cerebral tissue oxygen saturation (StO2), relative total hemoglobin concentration (rTHC), and relative cerebral blood flow (rCBF) measured by optics against the microdialysis biomarkers of metabolic stress and injury (lactate–pyruvate ratio (LPR) and glycerol) in neonatal swine models of deep hypothermic cardiopulmonary bypass (DHCPB), selective antegrade cerebral perfusion (SACP), and deep hypothermic circulatory arrest (DHCA). All three optical parameters were negatively correlated with LPR and glycerol in DHCA animals. Elevation of LPR was found to precede the elevation of glycerol by 30–60 min. From these data, thresholds for the detection of hypoxic-ischemia-associated cerebral metabolic distress and neurological injury are suggested. In total, this work provides insight into the timing and mechanisms of neurological injury following hypoxic-ischemia and reports a quantitative relationship between hypoxic-ischemia severity and neurological injury that may inform DHCA management.
Transmission Patterns of Clostridioides difficile in a Non-Epidemic Setting Based on WGS Analysis
Authors: Courbin Virginie , Le Neindre Killian , Couturier Jeanne , Gateau Cécile , Zaidi Rabab Syed , Youssouf Anlyata , Barbut Frédéric
Published: August 2022

Clostridioides difficile is a major nosocomial pathogen and has a considerable burden on healthcare systems. Our objective was to determine the transmission patterns of C. difficile in a non-epidemic setting using whole-genome multi-locus sequence typing (wgMLST) and core-genome single-nucleotide polymorphism (cgSNP) analyses. A retrospective study was conducted in a 650-bed university hospital between January 2016 and February 2017. In total, 191 strains isolated from 169 symptomatic C. difficile infection (CDI) patients were analyzed by WGS. Sequences were compared using wgMLST and cgSNP analyses. Genetic data and ward movements were then combined to identify the transmission rate and the type of transmission. The transmission rate varied from 55/169 (19.5%) (wgMLST) to 33/169 (32.5%) (cgSNP). Most transmission was considered cryptic, irrespective of the genetic analysis (38/55 [69.1%] by wgMLST to 25/33 [75.8%] by cgSNP). No transmission within the same ward was observed. In a non-epidemic setting, most C. difficile transmission occurs from sources other than symptomatic CDI patients.
Biomakers in Chronic Chagas Cardiomyopathy
Authors: Rodrigues Angela Braga , da Gama Torres Henrique Oswaldo , Nunes Maria do Carmo Pereira , de Assis Silva Gomes Juliana , Rodrigues Aline Braga , Pinho Laura Lopes Nogueira , Rocha Manoel Otavio , Botoni Fernando Antonio
Published: August 2022

The primary objective was to observe the relationship between serum levels of BNP, Ca-125, C-reactive protein and uric acid as prognostic and functional markers in patients with chronic Chagas cardiomyopathy (CCC). Circulating levels of cytokines: IL-1β, TNFα, IL-10, IL6, IL-8 and IL-12 were determined and investigated regarding their association with hemodynamic parameters, clinical signs of heart failure and outcome. Chagas is still a neglected disease that affects numerous individuals, many of them in their most productive years. CCC with left ventricular dysfunction is the most severe presentation of Chagas Disease. BNP is a well-recognized prognostic and clinical biomarker, not only in chronic heart failure patients but also in patients with CCC. Previous studies have shown Ca-125, C-reactive protein, and uric acid to be potentially good prognostic markers in heart failure (HF). Fifty patients with left ventricular fraction less (LVEF) than 55% were selected and followed for a mean period of 18 ± 8.3 months. Patient’s mean age was 43.42 ± 10.3 years (32 male), their BNP was 293 (160–530) pg/mL, Ca-125 8.5 (5.5–16.75) U/mL, uric acid 6.2 ± 2 mg/dL, and C- reactive protein 4.5 (4.5–7.3) mg/L. Patients who had LVEF less than 35% had higher BNP (p = 0.0023), Ca-125 (p = 0.027) and uric acid (p = 0.01) serum levels. Patients who died also showed higher BNP (p = 0.01), uric acid (p = 0.05) and a trend towards higher Ca-125 serum levels (p = 0.056). All markers: BNP, Ca-125, uric acid and C-reactive had good predictability of death in Cox-regression univariate analysis, however, not on the final multivariate model. Of the inflammatory cytokines, IL-8 and IL-12 showed a relation to LVEF of less than 35%. IL-12 was related to adverse cardiovascular events and non-survival. IL-1β was a good predictor of mortality in the final Cox regression model. Determination of Ca-125, uric acid levels and C-reactive protein may add useful clinical and prognostic information and may help clinical decision making for patients with CCC.
Adaptation and Resistance: How Bacteroides thetaiotaomicron Copes with the Bisphenol A Substitute Bisphenol F
Authors: Riesbeck Sarah , Petruschke Hannes , Rolle-Kampczyk Ulrike , Schori Christian , Ahrens Christian H. , Eberlein Christian , Heipieper Hermann J. , von Bergen Martin , Jehmlich Nico
Published: August 2022

Bisphenols are used in the process of polymerization of polycarbonate plastics and epoxy resins. Bisphenols can easily migrate out of plastic products and enter the gastrointestinal system. By increasing colonic inflammation in mice, disrupting the intestinal bacterial community structure and altering the microbial membrane transport system in zebrafish, bisphenols seem to interfere with the gut microbiome. The highly abundant human commensal bacterium Bacteroides thetaiotaomicron was exposed to bisphenols (Bisphenol A (BPA), Bisphenol F (BPF), Bisphenol S (BPS)), to examine the mode of action, in particular of BPF. All chemicals caused a concentration-dependent growth inhibition and the half-maximal effective concentration (EC50) corresponded to their individual logP values, a measure of their hydrophobicity. B. thetaiotaomicron exposed to BPF decreased membrane fluidity with increasing BPF concentrations. Physiological changes including an increase of acetate concentrations were observed. On the proteome level, a higher abundance of several ATP synthase subunits and multidrug efflux pumps suggested an increased energy demand for adaptive mechanisms after BPF exposure. Defense mechanisms were also implicated by a pathway analysis that identified a higher abundance of members of resistance pathways/strategies to cope with xenobiotics (i.e., antibiotics). Here, we present further insights into the mode of action of bisphenols in a human commensal gut bacterium regarding growth inhibition, and the physiological and functional state of the cell. These results, combined with microbiota-directed effects, could lead to a better understanding of host health disturbances and disease development based on xenobiotic uptake.
Biogeotechnology, Biocorrosion, and Remediation—Three Areas of Modern Applied Environmental Microbiology
Authors: Vainshtein Mikhail , Abashina Tatiana
Published: August 2022

For many years, medical microbiology and food microbiology have been the most studied areas of microbial biology [...]
The Role of the Human Gut Microbiome in Inflammatory Bowel Disease and Radiation Enteropathy
Authors: Fernandes Darren , Andreyev Jervoise
Published: August 2022

The human gut microbiome plays a key role in regulating host physiology. In a stable state, both the microbiota and the gut work synergistically. The overall homeostasis of the intestinal flora can be affected by multiple factors, including disease states and the treatments given for those diseases. In this review, we examine the relatively well-characterised abnormalities that develop in the microbiome in idiopathic inflammatory bowel disease, and compare and contrast them to those that are found in radiation enteropathy. We discuss how these changes may exert their effects at a molecular level, and the possible role of manipulating the microbiome through the use of a variety of therapies to reduce the severity of the underlying condition.
Molecular Characterization and Assessment of Risk Factors Associated with Theileria annulata Infection
Authors: Ullah Karim , Numan Muhammad , Alouffi Abdulaziz , Almutairi Mashal M. , Zahid Hafsa , Khan Majid , Islam Zia Ul , Kamil Atif , Safi Sher Zaman , Ahmed Haroon , Tanaka Tetsuya , Ali Abid
Published: August 2022

Theileria annulata is a tick-associated parasite that causes tropical theileriosis in livestock and is responsible for huge economic losses. Studies have been neglected on the effect of Theileria spp. on cattle in Khyber Pakhtunkhwa (KP), Pakistan. The present study was designed to determine the genetic diversity and assess the risk factors associated with Theileria infection in selected districts of KP. Information on the risk factors related to the Theileria infection was collected through a questionnaire. Blood samples were collected from symptomatic cattle from January 2019 to February 2020, identified morphologically through microscopic examination, and processed for molecular characterization using the 18S rRNA gene as a genetic marker. Of the 555 cattle examined (136, 24.5%) and (294, 53%) were found positive for Theileria spp. by microscopic examination and a PCR test, respectively. Based on the PCR test, the highest prevalence of infection was found in district Upper Dir (46/75, 61.3%), followed by Lower Dir (54/90, 60%); Malakand (51/88, 57.9%); Peshawar (40/80, 50%); and Charsadda (52/112, 46.4%), with the lowest in Bajaur (51/110, 46.34%). A BLAST analysis of the 18S rDNA sequences showed 99.5% identity with T. annulata. In a phylogenetic tree, the 18S rDNA sequence of T. annulata clustered with sequences from Pakistan, China, and Italy. A significant association was observed between the prevalence of infection and different host characteristics. The highest infection was found in adult cattle (216/360, 60%); females (218/377, 57.8%); and Holstein Friesian (120/180, 66.6%). Theileria infection was significantly associated with management practices. Higher infection rates were observed in free-grazing cattle (190/412, 42.2%); those kept in unhygienic conditions (246/405, 60.7%); cattle in combined farming systems (165/255, 64.8%); and those in congested stall systems (150/218, 68.8%). Seasonal patterns were found to be significantly associated with infection, and a higher infection rate was observed in summer (215/350, 61.4%) than in winter (79/205, 38.5%). Identified risk factors should be considered in designing practical control approaches to reduce the burden of Theileria infection. Large scale studies are required to explore the diversity of Theileria species in KP, Pakistan.
Nitrogen Fixation Activity and Genome Analysis of a Moderately Haloalkaliphilic Anoxygenic Phototrophic Bacterium Rhodovulum tesquicola
Authors: Komova Anastasia V. , Bakhmutova Elizaveta D. , Izotova Anna O. , Kochetova Evelina S. , Toshchakov Stepan V. , Namsaraev Zorigto B. , Golichenkov Maxim V. , Korzhenkov Aleksei A.
Published: August 2022

The genome of the moderately haloalkaliphilic diazotrophic anoxygenic phototrophic bacterium Rhodovulum tesquicola A-36sT isolated from an alkaline lake was analyzed and compared to the genomes of the closest species Rhodovulum steppense A-20sT and Rhodovulum strictum DSM 11289T. The genomic features of three organisms are quite similar, reflecting their ecological and physiological role of facultative photoheterotrophs. Nevertheless, the nitrogenase activity of the pure cultures of the studied bacteria differed significantly: the highest rate (4066 nmoles C2H2/mg of dry weight per hour) was demonstrated by Rhodovulum strictum while the rates in Rhodovulum tesquicola and Rhodovulum steppense were an order of magnitude lower (278 and 523 nmoles C2H2/mg of dry weight per hour, respectively). This difference can be attributed to the presence of an additional nitrogenase operon found exclusively in R. strictum and to the structural variation in nitrogenase operon in R. tesquicola.
Potential Use of Deep-Sea Sediment Bacteria for Oil Spill Biodegradation: A Laboratory Simulation
Authors: Prartono Tri , Dwinovantyo Angga , Syafrizal Syafrizal , Syakti Agung Dhamar
Published: August 2022

Deep-sea sedimentary hydrocarbonoclastic bacteria are still not widely used in the bioremediation field, especially for crude oil spill biodegradation. This study utilized a mixed culture of Raoultella sp., Enterobacter sp., and Pseudomonas sp. isolated from deep-sea sediment to determine the abilities of bacteria to degrade petroleum hydrocarbons while incorporating environmental variations in a microcosm study. The oil biodegradation extent was determined by measuring the remaining oil and grease in the sample vials. The highest percentage of biodegradation was 88.6%, with a constant degradation rate of 0.399 day–1. GC-MS analysis showed that the most degradable compound in the oil samples was paraffin. This study also observed that microbial degradation was optimized within three days of exposure and that degradation ability decreased at 35 °C. The salinity variation effects were insignificant. Based on all analyses, deep-sea sediment bacteria have great potential in oil spill biodegradation in a microcosm scale.
A Winter-to-Summer Transition of Bacterial and Archaeal Communities in Arctic Sea Ice
Authors: Thiele Stefan , Storesund Julia E. , Fernández-Méndez Mar , Assmy Philipp , Øvreås Lise
Published: August 2022

The Arctic is warming 2–3 times faster than the global average, leading to a decrease in Arctic sea ice extent, thickness, and associated changes in sea ice structure. These changes impact sea ice habitat properties and the ice-associated ecosystems. Sea-ice algal blooms provide various algal-derived carbon sources for the bacterial and archaeal communities within the sea ice. Here, we detail the transition of these communities from winter through spring to early summer during the Norwegian young sea ICE (N-ICE2015) expedition. The winter community was dominated by the archaeon Candidatus Nitrosopumilus and bacteria belonging to the Gammaproteobacteria (Colwellia, Kangiellaceae, and Nitrinocolaceae), indicating that nitrogen-based metabolisms, particularly ammonia oxidation to nitrite by Cand. Nitrosopumilus was prevalent. At the onset of the vernal sea-ice algae bloom, the community shifted to the dominance of Gammaproteobacteria (Kangiellaceae, Nitrinocolaceae) and Bacteroidia (Polaribacter), while Cand. Nitrosopumilus almost disappeared. The bioinformatically predicted carbohydrate-active enzymes increased during spring and summer, indicating that sea-ice algae-derived carbon sources are a strong driver of bacterial and archaeal community succession in Arctic sea ice during the change of seasons. This implies a succession from a nitrogen metabolism-based winter community to an algal-derived carbon metabolism-based spring/ summer community.
Effect of Climate on Bacterial and Archaeal Diversity of Moroccan Marine Microbiota
Authors: Sbaoui Yousra , Ezaouine Abdelkarim , Toumi Marwene , Farkas Rózsa , Kbaich Mouad Ait , Habbane Mouna , El Mouttaqui Sara , Kadiri Fatem Zahra , El Messal Mariame , Tóth Erika , Bennis Faiza , Chegdani Fatima
Published: August 2022

The Moroccan coast is characterized by a diversity of climate, reflecting a great richness and diversity of fauna and flora. By this, marine microbiota plays a fundamental role in many biogeochemical processes, environmental modifications, and responses to temperature changes. To date, no exploration by high-throughput techniques has been carried out on the characterization of the Moroccan marine microbiota. The objective of this work is to study the diversity and metabolic functions of MMM from the Moroccan coast (Atlantic and Mediterranean) according to the water source (WS) and the type of climate (CT) using the approach high-throughput sequencing of the 16SrRNA gene. Four water samples of twelve sampling sites from the four major climates along the Moroccan coastline were collected, and prokaryotic DNA was extracted. V4 region of 16S rRNA gene was amplified, and the product PCR was sequenced by Illumina Miseq. The β-diversity and α-diversity indices were determined to assess the species richness and evenness. The obtained results were analyzed by Mothur and R software. A total of twenty-eight Bacterial phyla and twelve Archaea were identified from the samples. Proteobacteria, Bacteroidetes, and Cyanobacteria are the three key bacterial phyla, and the Archaeal phyla identified are: Euryarchaeota, Nanoarchaeaeota, Crenarchaeota, Hydrothermarchaeota, Asgardaeota, Diapherotrites, and Thaumarchaeota in the Moroccan coastline and the four climates studied. The whole phylum are involved in marine biogeochemical cycles, and through their functions they participate in the homeostasis of the ocean in the presence of pollutants or stressful biotic and abiotic factors. In conclusion, the obtained results reported sufficient deepness of sequencing to cover the majority of Archaeal and Bacterial genera in each site. We noticed a strong difference in microbiota diversity, abundance, and taxonomy inter- and intra-climates and water source without significant differences in function. To better explore this diversity, other omic approaches can be applied such as the metagenomic shotgun, and transcriptomic approaches allowing a better characterization of the Moroccan marine microbiota and to understand the mechanisms of its adaptation and its impacts in/on the ecosystem.
A Case Study for the Recovery of Authentic Microbial Ancient DNA from Soil Samples
Authors: Pérez Vilma , Liu Yichen , Hengst Martha B. , Weyrich Laura S.
Published: August 2022

High Throughput DNA Sequencing (HTS) revolutionized the field of paleomicrobiology, leading to an explosive growth of microbial ancient DNA (aDNA) studies, especially from environmental samples. However, aDNA studies that examine environmental microbes routinely fail to authenticate aDNA, examine laboratory and environmental contamination, and control for biases introduced during sample processing. Here, we surveyed the available literature for environmental aDNA projects—from sample collection to data analysis—and assessed previous methodologies and approaches used in the published microbial aDNA studies. We then integrated these concepts into a case study, using shotgun metagenomics to examine methodological, technical, and analytical biases during an environmental aDNA study of soil microbes. Specifically, we compared the impact of five DNA extraction methods and eight bioinformatic pipelines on the recovery of microbial aDNA information in soil cores from extreme environments. Our results show that silica-based methods optimized for aDNA research recovered significantly more damaged and shorter reads (<100 bp) than a commercial kit or a phenol–chloroform method. Additionally, we described a stringent pipeline for data preprocessing, efficiently decreasing the representation of low-complexity and duplicated reads in our datasets and downstream analyses, reducing analytical biases in taxonomic classification.
The Early Cretaceous Granitoids and Microgranular Mafic Enclaves of Sanguliu Pluton, the Liaodong Peninsula: Implications for Magma Mixing and Decratonic Gold Mineralization in the Eastern North China Craton
Authors: Wu Taotao , Chen Cong , Li Dongtao , Zhao Yan , Zhao Chunqiang , Zhou Yongheng
Published: August 2022

Some Early Cretaceous granitoids characterized by abundant mafic microgranular enclaves (MMEs) formed by magma mixing have been associated with gold deposits in the eastern North China Craton (NCC). However, the genetic connection of magma mixing with gold mineralization remains unclear. The zircon U–Pb ages and in situ Lu-Hf isotopic compositions, whole-rock major- and trace-element and Sr–Nd–Pb isotopic compositions, as well as EPMA biotite compositions, were presented for the Sanguliu granodiorite and enclaves in the Liaodong Peninsula in order to obtain insights into the spatial and temporal distribution, and internal connection of magma mixing with the decratonic gold deposits in the eastern NCC. The Sanguliu granodiorite yielded coeval formation ages with the enclaves (~123 Ma), and their acicular apatites and plagioclase megacrysts suggest that the enclaves were formed by mixing between mafic and felsic magmas. Geochemically, the Sanguliu granodiorite is high-K calc-alkaline I-type granite, with an initial 87Sr/86Sr ratio of 0.70552 to 0.71470 and strongly negative εNd(t) (−11.4 to −21.3) and zircon in situ εHf(t) values (−15.1 to −25.4), indicating that the felsic magmas were ancient lower crust with the involvement of mantle-derived materials. Meanwhile, the enclaves have high MgO (4.18 to 6.17 wt.%), Cr (45.91 to 290.04 ppm), and Ni (19.65 to 88.18 ppm) contents, with high Mg# values of 50 to 57 at intermediate SiO2 contents (53.68 to 55.78 wt.%), highly negative εNd(t) values (mostly −18.42 to −22.03), and in situ zircon εHf(t) values (−18.6 to −22.7), indicating that the mafic magma was mainly derived from the enriched lithospheric mantle. Furthermore, the biotites from the Sanguliu granodiorite clustered between the MH and NNO buffers in the Fe2+–Fe3+–Mg diagram. This, combined with the high Ce/Ce* ratios (1.30 to 107.18) of the zircons, indicates that the primary magmas forming the Sanguliu granodiorite had a high oxygen fugacity, which is favorable for gold mineralization. These findings, together with previous studies of the Early Cretaceous granitoids with enclaves in the eastern NCC, suggest that magma mixing commonly occurred during 110–130 Ma and is temporally, spatially, and genetically related to decratonic gold systems in eastern NCC.
Growth Stimulation, Phosphate Resolution, and Resistance to Fungal Pathogens of Some Endogenous Fungal Strains in the Rhizospheres of Medicinal Plants in Vietnam
Authors: Huong Nguyen Thi Mai , Hoai Pham Thi Thu , Thao Phan Thi Hong , Huong Tran Thi , Chinh Vu Duc
Published: August 2022

Endophytic fungi are recognized for their many potential applications in agriculture, such as supporting cropland expansion and increasing the yield and resistance of plants by creating antibiotics that inhibit the growth of pathogenic microorganisms. In addition, they can produce enzymes that break down hard-to-solubilize substances within soil, dissolve phosphates, fix nitrogen, reduce metals, and produce hormones that promote plant growth (auxin, cytokinin, and gibberellins) to keep crops healthy. In this report, three strains of endophytic fungi, namely, N1, N2, and N3, were isolated from the roots of Stevia rebaudiana (Bert.) Hemsl., Polyscias fruticosa, and Angelica dahurica in some localities in Vietnam. Through a screening process, it was found that they can produce high levels of indole acetic acid (IAA), resolve phosphates, and resist disease, and they were selected to as an alternative to chemical fertilizers to make probiotics in order to increase medicinal plant yields. The results show that the three strains of fungi have the ability to degrade phosphate to 341.90, 1498.46, and 390.79 ppm; the content of IAA produced in the culture medium reached 49.00, 52.35, and 33.34 ppm. Based on some morphological characteristics and an internal transcribed spacer gene sequence analysis of the fungal strains, N1, N2, and N3 were named Penicillium simplicissimum CN7, Talaromyces flavus BC1, and Trichoderma konilangbra DL3, respectively, which have the ability to inhibit the growth of pathogenic fungal strains, such as fungus C. gloeosporioides (CD1), fungus F. oxysporum, fungus L. theobromae N13, and N. dimidiatum. They grow significantly over a period of 5 to 6 days.
Pharmacological Profile, Bioactivities, and Safety of Turmeric Oil
Authors: Orellana-Paucar Adriana Monserrath , Machado-Orellana María Gabriela
Published: August 2022

The pharmacological attributes of turmeric have been extensively described and frequently related to the action of curcuminoids. However, there is also scientific evidence of the contribution of turmeric oil. Since the oil does not contain curcuminoids in its composition, it is crucial to better understand the therapeutic role of other constituents in turmeric. The present review discusses the pharmacokinetics of turmeric oil, pointing to the potential application of its active molecules as therapeutic compounds. In addition, the bioactivities of turmeric oil and its safety in preclinical and clinical studies were revised. This literature-based research intends to provide an updated overview to promote further research on turmeric oil and its constituents.
Singlet Fission, Polaron Generation and Intersystem Crossing in Hexaphenyl Film
Authors: Ni Wenjun , Li Tianjiao , Kloc Christian , Sun Licheng , Gurzadyan Gagik G.
Published: August 2022

The ultrafast dynamics of triplet excitons and polarons in hexaphenyl film was investigated by time-resolved fluorescence and femtosecond transient absorption techniques under various excitation photon energies. Two distinct pathways of triplet formation were clearly observed. Long-lived triplet states are populated within 4.5 ps via singlet fission-intersystem crossing, while the short-lived triplet states (1.5 ns) are generated via singlet fission from vibrational electronic states. In the meantime, polarons were formed from hot excitons on a timescale of <30 fs and recombined in ultrafast lifetime (0.37 ps). In addition, the characterization of hexaphenyl film suggests the morphologies of crystal and aggregate to wide applications in organic electronic devices. The present study provides a universally applicable film fabrication in hexaphenyl system towards future singlet fission-based solar cells.
Synthesis of Homodrimane Sesquiterpenoids Bearing 1,3-Benzothiazole Unit and Their Antimicrobial Activity Evaluation
Authors: Lungu Lidia , Cucicova Caleria , Blaja Svetlana , Ciocarlan Alexandru , Dragalin Ion , Barba Alic , Vornicu Nicoleta , Geana Elisabeta-Irina , Mangalagiu Ionel I. , Aricu Aculina
Published: August 2022

Based on some homodrimane carboxylic acids and their acyl chlorides, a series of fourteen 2-homodrimenyl-1,3-benzothiazoles, N-homodrimenoyl-2-amino-1,3-benzothiazoles, 4′-methyl-homodrimenoyl anilides and 4′-methyl-homodrimenthioyl anilides were synthesized and their biological activities were evaluated on five species of fungi (Aspergillus niger, Fusarium solani, Penicillium chrysogenum, P. frequentans, and Alternaria alternata) and two strains of bacteria (Bacillus sp. and Pseudomonas aeruginosa). The synthesis involved the decarboxylative cyclization, condensation and thionation of the said acids, anhydrides or their derivatives with 2-aminothiophenol, 2-aminobenzothiazole, p-toluidine and Lawesson’s reagent. As a result, together with the desired compounds, some unexpected products 8, 25, and 27 were obtained, and the structures and mechanisms for their formation have been proposed. Compounds 4, 9, and 25 showed higher antifungal and antibacterial activity compared to the standards caspofungin (MIC = 1.5 μg/mL) and kanamycin (MIC = 3.0 μg/mL), while compound 8 had comparable activities. In addition, compounds 6, 17, and 27 showed selective antifungal activity at MIC = 2.0, 0.25, and 1.0 μg/mL, respectively.
Theoretical Study on the High HER/OER Electrocatalytic Activities of 2D GeSi, SnSi, and SnGe Monolayers and Further Improvement by Imposing Biaxial Strain or Doping Heteroatoms
Authors: Li Cuimei , Yu Guangtao , Shen Xiaopeng , Li Ying , Chen Wei
Published: August 2022

Under the DFT calculations, two-dimensional (2D) GeSi, SnSi, and SnGe monolayers, considered as the structural analogues of famous graphene, are confirmed to be dynamically, mechanically and thermodynamically stable, and all of them can also possess good conductivity. Furthermore, we systematically investigate their electrocatalytic activities in overall water splitting. The SnSi monolayer can show good HER catalytic activity, while the SnGe monolayer can display remarkable OER catalytic activity. In particular, the GeSi monolayer can even exhibit excellent bifunctional HER/OER electrocatalytic activities. In addition, applying the biaxial strain or doping heteroatoms (especially P atom) can be regarded as the effective strategies to further improve the HER activities of these three 2D monolayers. The doped GeSi and SnSi systems can usually exhibit higher HER activity than the doped SnGe systems. The correlative catalytic mechanisms are also analyzed. This work could open up a new avenue for the development of non-noble-metal-based HER/OER electrocatalysts.
h-BN Modification Using Several Hydroxylation and Grafting Methods and Their Incorporation into a PMMA/PA6 Polymer Blend
Authors: Boukheit Abdelwahab , Chabert France , Otazaghine Belkacem , Taguet Aurélie
Published: August 2022

Hexagonal boron nitride (h-BN) has recently gained much attention due to its high thermal conductivity and low electrical conductivity. In this study, we proposed to evaluate the impact of the modification of h-BN for use in a polymethylmethacrylate/polyamide 6 (PMMA/PA6) polymer blend. Different methods to modify h-BN particles and improve their affinity with polymers were proposed. The modification was performed in two steps: (1) a hydroxylation step for which three different routes were used: calcination, acidic treatment, and ball milling using gallic acid; (2) a grafting step for which four different silane agents were used, carrying different molecular or macromolecular groups: the octadecyl group (Si-C18), propyl amine group (Si-NH2), polystyrene chain (Si-PS), and PMMA chain (Si-PMMA). The modified h-BN samples after hydroxylation and functionalization were characterized by FTIR and TGA. Py-GC/MS was also used to prove the successful graft with Si-C18 groups. Sedimentation tests and multiple light scattering were performed to assess the surface modification of h-BN. Granulometry and SEM observations were performed to evaluate the particle size distribution after hydroxylation. After the addition of Si-PMMA modified h-BN into a PMMA/PA6 co-continuous blend, the morphology of the polymer blend nanocomposites was characterized using SEM. The calculation of the wetting parameter based on the surface tension measurement using the liquid drop model showed that h-BN dispersed in the PA6 phase. Grafting PMMA chains onto hydroxylated h-BN particles combined with an adequate sequence mixing led to a successful localization of the grafted h-BN particles at the interface of the PMMA/PA6 blend.
Impact of Partial Slip on Double Diffusion Convection of Sisko Nanofluids in Asymmetric Channel with Peristaltic Propulsion and Inclined Magnetic Field
Authors: Akram Safia , Athar Maria , Saeed Khalid , Razia Alia , Alghamdi Metib , Muhammad Taseer
Published: August 2022

The current article discusses the outcomes of the double diffusion convection of peristaltic transport in Sisko nanofluids along an asymmetric channel having an inclined magnetic field. Consideration is given to the Sisko fluid model, which can forecast both Newtonian and non-Newtonian fluid properties. Lubricating greases are the best examples of Sisko fluids. Experimental research shows that most realistic fluids, including human blood, paint, dirt, and other substances, correspond to Sisko’s proposed definition of viscosity. Mathematical modelling is considered to explain the flow behavior. The simpler non-linear PEDs are deduced by using an elongated wavelength and a minimal Reynolds number. The expression is also numerically calculated. The impacts of the physical variables on the quantities of flow are plotted graphically as well as numerically. The results reveal that there is a remarkable increase in the concentration, temperature, and nanoparticle fraction with the rise in the Dufour and thermophoresis variables.
Knockdown of lncRNA TP53TG1 Enhances the Efficacy of Sorafenib in Human Hepatocellular Carcinoma Cells
Authors: Lu Qingchun , Xin Mingyang , Guo Qian , Rothberg Brad S. , Gamero Ana M. , Yang Ling
Published: August 2022

The multikinase inhibitor, sorafenib, is a first-line treatment for hepatocellular carcinoma (HCC), but its limited efficacy, drug resistance and toxicity are a concern. In this study, we investigated the role of lncRNA TP53TG1 in the efficacy of sorafenib in HCC cells. We found that treatment with sorafenib increased the expression of TP53TG1 in HCC cells. Knockdown of TP53TG1 sensitized tumor cells to the antiproliferative effects of sorafenib. Furthermore, TP53TG1 knockdown had an additive inhibitory effect on HCC cell proliferation and migration in the presence of sorafenib. The combination of TP53TG1 knockdown and sorafenib drastically inhibited the activation of the ERK pathway. This work demonstrates that TP53TG1 deficiency enhances the efficacy of sorafenib in HCC. Combining TP53TG1 knockdown with sorafenib may be an optimal form of therapy for HCC treatment.
A Transmissive Theory of Brain Function: Implications for Health, Disease, and Consciousness
Authors: Rouleau Nicolas , Cimino Nicholas
Published: August 2022

Identifying a complete, accurate model of brain function would allow neuroscientists and clinicians to make powerful neuropsychological predictions and diagnoses as well as develop more effective treatments to mitigate or reverse neuropathology. The productive model of brain function, which has been dominant in the field for centuries, cannot easily accommodate some higher-order neural processes associated with consciousness and other neuropsychological phenomena. However, in recent years, it has become increasingly evident that the brain is highly receptive to and readily emits electromagnetic (EM) fields and light. Indeed, brain tissues can generate endogenous, complex EM fields and ultraweak photon emissions (UPEs) within the visible and near-visible EM spectra. EM-based neural mechanisms, such as ephaptic coupling and non-visual optical brain signaling, expand canonical neural signaling modalities and are beginning to disrupt conventional models of brain function. Here, we present an evidence-based argument for the existence of brain processes that are caused by the transmission of extracerebral, EM signals and recommend experimental strategies with which to test the hypothesis. We argue for a synthesis of productive and transmissive models of brain function and discuss implications for the study of consciousness, brain health, and disease.
Soil Nitrogen Supply: Linking Plant Available N to Ecosystem Functions and Productivity
Authors: Dessureault-Rompré Jacynthe
Published: August 2022

Nitrogen (N), a common chemical element in the atmosphere (78% of our atmosphere) yet less common within the Earth’s crust (less than 2%), is a crucial nutrient for life [...]
The Effects of Persimmon (Diospyros kaki L.f.) Oligosaccharides on Features of the Metabolic Syndrome in Zebrafish
Authors: Nuankaew Wanlapa , Lee Hyo Kyu , Nam Youn Hee , Shim Ji Heon , Kim Na Woo , Shin Sung Woo , Kim Min Cheol , Shin Seung Yeon , Hong Bin Na , Dej-adisai Sukanya , Kwak Jong Hwan , Kang Tong Ho
Published: August 2022

Metabolic syndrome has become a global health care problem since it is rapidly increasing worldwide. The search for alternative natural supplements may have potential benefits for obesity and diabetes patients. Diospyros kaki fruit extract and its oligosaccharides, including gentiobiose, melibiose, and raffinose, were examined for their anti-insulin resistance and obesity-preventing effect in zebrafish larvae. The results show that D. kaki oligosaccharides improved insulin resistance and high-fat-diet-induced obesity in zebrafish larvae, evidenced by enhanced β-cell recovery, decreased abdominal size, and reduced the lipid accumulation. The mechanism of the oligosaccharides, molecular docking, and enzyme activities of PTP1B were investigated. Three of the oligosaccharides had a binding interaction with the catalytic active sites of PTP1B, but did not show inhibitory effects in an enzyme assay. The catalytic residues of PTP1B were typically conserved and the cellular penetration of the cell membrane was necessary for the inhibitors. The results of the mechanism of action study indicate that D. kaki fruit extract and its oligosaccharides affected gene expression changes in inflammation- (TNF-α, IL-6, and IL-1β), lipogenesis- (SREBF1 and FASN), and lipid-lowering (CPT1A)-related genes. Therefore, D. kaki fruit extract and its oligosaccharides may have a great potential for applications in metabolic syndrome drug development and dietary supplements.