bluuebunny/crossref_metadata_2025 huggingface dataset:
Definition of Optimal Maize Seeding Rates Based on the Potential Yield of Management Zones
Authors: Anselmi Adriano Adelcino , Molin José Paulo , Bazame Helizani Couto , Corrêdo Lucas de Paula
Published: September 2021

The decision on crop population density should be a function of biotic and abiotic field parameters and optimize the site-specific yield potential, which can be a real challenge for farmers. The objective of this study was to investigate the yield of maize hybrids subjected to variable rate seeding (VRS) and in differentiated management zones (MZs). The experiment was conducted between 2013 and 2015 in a commercial field in the Central-West region of Brazil. First, MZ were delineated using the K-means algorithm with layers involving soil electrical conductivity, yield maps from previous years, and elevation. Seven maize hybrids at five seeding rates were evaluated in the context of each MZ and the cause-and-effect relationship with soil attributes was investigated. Optimal yields were obtained for crop population densities between 70,000 plants ha−1 and 80,000 plants ha−1. Hybrids which perform well under higher densities are key in achieving positive results using VRS. The plant population densities that resulted in maximum yields were obtained for densities at least 27% higher than the recommended seeding rates. The yield variance between MZs can be explained by the variance in soil attributes, while the yield variance within MZs can be explained by the variance in plant population densities. The study shows that on-farm experimentation can be key for obtaining information concerning yield potential. The management by VRS in different MZs is a low-cost technique that can reduce input application costs and optimize yield according to the site-specific potential of the field.
ACE-ADP: Adversarial Contextual Embeddings Based Named Entity Recognition for Agricultural Diseases and Pests
Authors: Guo Xuchao , Hao Xia , Tang Zhan , Diao Lei , Bai Zhao , Lu Shuhan , Li Lin
Published: September 2021

Entity recognition tasks, which aim to utilize the deep learning-based models to identify the agricultural diseases and pests-related nouns such as the names of diseases, pests, and drugs from the texts collected on the internet or input by users, are a fundamental component for agricultural knowledge graph construction and question-answering, which will be implemented as a web application and provide the general public with solutions for agricultural diseases and pest control. Nonetheless, there are still challenges: (1) the polysemous problem needs to be further solved, (2) the quality of the text representation needs to be further enhanced, (3) the performance for rare entities needs to be further improved. We proposed an adversarial contextual embeddings-based model named ACE-ADP for named entity recognition in Chinese agricultural diseases and pests domain (CNER-ADP). First, we enhanced the text representation and overcame the polysemy problem by using the fine-tuned BERT model to generate the contextual character-level embedded representation with the specific knowledge. Second, adversarial training was also introduced to enhance the generalization and robustness in terms of identifying the rare entities. The experimental results showed that our model achieved an F1 of 98.31% with 4.23% relative improvement compared to the baseline model (i.e., word2vec-based BiLSTM-CRF) on the self-annotated corpus named Chinese named entity recognition dataset for agricultural diseases and pests (AgCNER). Besides, the ablation study and discussion demonstrated that ACE-ADP could not only effectively extract rare entities but also maintain a powerful ability to predict new entities in new datasets with high accuracy. It could be used as a basis for further research on other domain-specific named entity recognition.
Phone App to Perform Quality Control of Pesticide Spray Applications in Field Crops
Authors: Nansen Christian , Villar Gabriel Del , Recalde Alexander , Alvarado Elvis , Chennapragada Krishna
Published: September 2021

It has been recognized for decades that low and inconsistent spray coverages of pesticide applications represent a major challenge to successful and sustainable crop protection. Deployment of water-sensitive spray cards combined with image analysis can provide valuable and quantitative insight into spray coverage. Herein we provide description of a novel and freely available smartphone app, “Smart Spray”, for both iOS and Android smart devices (iOS and Google app stores). More specifically, we provide a theoretical description of spray coverage, and we describe how Smart Spray and similar image-processing software packages can be used as decision support tools and quality control for pesticide spray applications. Performance assessment of the underlying pixel classification algorithm is presented, and we detail practical recommendations on how to use Smart Spray to maximize accuracy and consistency of spray coverage predictions. Smart Spray was developed as part of ongoing efforts to: (1) maximize the performance of pesticide sprays, (2) minimize pest-induced yield loss and to potentially reduce the amount of pesticide used, (2) reduce the risk of target pests developing pesticide resistance, (3) reduce the risk of spray drift, and (4) optimize spray application costs by introducing a quality control.
Agronomic Assessment of Fibrous Flax and Linseed Advanced Breeding Lines as Potential New Varieties
Authors: Praczyk Marcin , Wielgusz Katarzyna
Published: September 2021

The aim of the study was to determine the breeding value of advanced lines of fibrous flax and oilseed flax (linseed) on the basis of comparative experiments with reference varieties. In field experiments conducted in 2019–2020, the HDH line of fibrous flax and the R26 linseed line were assessed in terms of significant phenotypic traits and also traits affecting the yield structure. Due to the fundamentally different weather conditions in the growing seasons of 2019 and 2020, it was also possible to determine the susceptibility of the studied genotypes of flax to climatic stress factors. The obtained results showed the high breeding value of the HDH line as a potential new variety of fibrous flax. The R26 line did not exceed the reference varieties in terms of the traits essential for the oily form of the cultivated flax cultivars, but it was characterized by a favorable morphological and yield-forming structure for dual purpose varieties. Moreover, both assessed lines showed high resistance to unfavorable climatic conditions.
Effects of Phosphorus Supply on the Leaf Photosynthesis, and Biomass and Phosphorus Accumulation and Partitioning of Canola (Brassica napus L.) in Saline Environment
Authors: Wang Long , Zheng Jingdong , You Jingjing , Li Jing , Qian Chen , Leng Suohu , Yang Guang , Zuo Qingsong
Published: September 2021

Salt stress is a major negative factor affecting the sustainable development of agriculture. Phosphorus (P) deficiency often occurs in saline soil, and their interaction inhibits plant growth and seed yield for canola (Brassica napus L.). P supply is considered an effective way to alleviate the damage of salt stress. However, the knowledge of how P supply can promote plant growth in saline environment was limited. A field experiment was conducted to explore the effects of P rate on accumulation, and partitioning, of biomass and P, leaf photosynthesis traits, and yield performance in saline soil in the coastal area of Yancheng City, Jiangsu Province, China, during the 2018–2019 and 2019–2020 growing seasons. P supply increased biomass and P accumulation in all organs, and root had the most increments among different organs. At flowering stage, P supply increased the biomass and P partitioning in root and leaf, but it decreased the partitioning in stem. At maturity stage, P supply facilitated the biomass and P partitioning in seed, but it decreased the partitioning in stem and shell, and it increased the reproductive-vegetative ratio, suggesting that P supply can improve the nutrients transporting from vegetative organs to reproductive organs. Besides, P supply improved the leaf area index and photosynthetic rate at the flowering stage. As a result, the seed yield and oil yield were increased. In conclusion, P supply can improve the canola plant growth and seed yield in a saline environment. P fertilizer at the rate of 120 kg P2O5 ha−1 was recommended in this saline soil.
A Heuristic and Data Mining Model for Predicting Broiler House Environment Suitability
Authors: Martinez Angel Antonio Gonzalez , Nääs Irenilza de Alencar , de Carvalho-Curi Thayla Morandi Ridolfi , Abe Jair Minoro , da Silva Lima Nilsa Duarte
Published: September 2021

The proper combination of environment and flock-based variables plays a critical role in broiler production. However, the housing environment control is mainly focused on temperature monitoring during the broiler growth process. The present study developed a novel predictive model to predict the broiler (Gallus gallus domesticus) rearing conditions’ suitability using a data-mining process centered on flock-based and environmental variables. Data were recorded inside four commercial controlled environment broiler houses. The data analysis was conducted in three steps. First, we performed an exploratory and descriptive analysis of the environmental data. In the second step, we labeled the target variable that led to a specific broiler-rearing scenario depending on the age of the birds, the environmental dry-bulb temperature and relative humidity, the ammonia concentration, and the ventilation rate. The output (final rearing condition) was discretized into four categories (‘Excellent’, ‘Good’, ‘Moderate’, and ‘Inappropriate’). In the third step, we used the dataset to develop tree models using the data-mining process. The random-tree model only presented accuracy for predicting the ‘Excellent’ and ‘Moderate’ rearing conditions. The decision-tree model had high accuracy and indicated that broiler age, relative humidity, and ammonia concentration play a critical role in proper rearing conditions. Using a large amount of data allows the data-mining approach to building up ‘if–then’ rules that indicate suitable environmental control decision-making by broiler farmers.
The Effect of Human–Horse Interactions on Equine Behaviour, Physiology, and Welfare: A Scoping Review
Authors: Kelly Katherine Jennifer , McDuffee Laurie Anne , Mears Kimberly
Published: September 2021

Human–horse interactions (HHIs) are diverse and prominent in the equine industry. Stakeholders have an invested interest in making sure that HHIs are humane. Assessment of equine welfare goes beyond physical health and includes assessment of the emotional state of the animal. HHIs can have a permanent effect on human–horse relationships, thereby influencing welfare. Therefore, an understanding of the horse’s affective state during HHIs is necessary. A scoping review was conducted to: (1) map current practices related to the measurement of HHIs; (2) explore the known effects of HHIs on horse behaviour and physiology; and (3) clarify the connection between HHIs and equine welfare. A total of 45 articles were included in this review. Studies that used both physiological and behavioural measures of equine response to human interactions accounted for 42% of the included studies. A further 31% exclusively used physiological measures and 27% used behavioural observation. Current evidence of equine welfare during HHIs is minimal and largely based on the absence of a negative affective state during imposed interactions. Broadening the scope of methods to evaluate a positive affective state and standardization of methodology to assess these states would improve the overall understanding of the horse’s welfare during HHIs.
Potential Novel Biomarkers for Mastitis Diagnosis in Sheep
Authors: Libera Kacper , Konieczny Kacper , Grabska Julia , Smulski Sebastian , Szczerbal Izabela , Szumacher-Strabel Małgorzata , Pomorska-Mól Małgorzata
Published: September 2021

This review aims to characterize promising novel markers of ovine mastitis. Mastitis is considered as one of the primary factors for premature culling in dairy sheep and has noticeable financial, productional, and animal welfare-related implications. Furthermore, clinical, and subclinical mammary infections negatively affect milk yield and alter the milk composition, thereby leading to lowered quality of dairy products. It is, therefore, crucial to control and prevent mastitis through proper diagnosis, treatment or culling, and appropriate udder health management particularly at the end of the lactation period. The clinical form of mastitis is characterized by abnormalities in milk and mammary gland tissue alteration or systemic symptoms consequently causing minor diagnostic difficulties. However, to identify ewes with subclinical mastitis, laboratory diagnostics is crucial. Mastitis control is primarily dependent on determining somatic cell count (SCC) and the California Mastitis Test (CMT), which aim to detect the quantity of cells in the milk sample. The other useful diagnostic tool is microbial culture, which complements SCC and CMT. However, all mentioned diagnostic methods have their limitations and therefore novel biomarkers of ovine subclinical mastitis are highly desired. These sensitive indicators include acute-phase proteins, miRNA, and cathelicidins measurements, which could be determined in ovine serum and/or milk and in the future may become useful in early mastitis diagnostics as well as a preventive tool. This may contribute to increased detection of ovine mammary gland inflammation in sheep, especially in subclinical form, and consequently improves milk quality and quantity.
Effects of Dog-Assisted Therapy in Adolescents with Eating Disorders: A Study Protocol for a Pilot Controlled Trial
Authors: Lavín-Pérez Ana Myriam , Martín-Sánchez Cristina , Martínez-Núñez Beatriz , Lobato-Rincón Luis Lucio , Villafaina Santos , González-García Israel , Mata-Cantero Ana , Graell Montserrat , Merellano-Navarro Eugenio , Collado-Mateo Daniel
Published: September 2021

Background: Eating disorders are characterized by a persistent disturbance that alters food intake and it is often accompanied by anxiety, depression, low self-esteem, or reduced functional capacity and quality of life. Animal-assisted therapies (AAT) have shown benefits in these variables in children and adult populations. Thus, the present pilot study will aim to evaluate the effects of a dog-assisted therapy on the eating disorders symptoms, mental, psychosocial, and physical health, quality of life, and handgrip strength of adolescents suffering from eating disorders. Methods: The current pilot study will involve 32 patients, who will be assigned to a control or an experimental group. Intervention will be conducted once a week for seven weeks. Neither the experimental nor the control group will discontinue their usual care. The main outcome measures will be the eating disorder symptoms and the health-related quality of life measured with standardized questionnaires, while the secondary variables will be anxiety, depression, character, behavior, strength, and body mass. Conclusions: This pilot-controlled trial will be the first to evaluate the effects of dog-assisted therapy on the physical and mental health of adolescents with eating disorders. Significant improvements, in the primary and secondary outcomes, may be expected based on the known benefits of AAT on self-esteem, stress, and self-control in different populations. Finally, although the program is focused on the improvement of adolescents’ health, animal welfare will be a priority in this study.
De Novo Transcriptome Analysis Reveals Potential Thermal Adaptation Mechanisms in the Cicada Hyalessa fuscata
Authors: Nguyen Hoa Quynh , Kim Yuseob , Jang Yikweon
Published: September 2021

In metropolitan Seoul, populations of the cicada Hyalessa fuscata in hotter urban heat islands (“high UHIs”) exhibit higher thermal tolerance than those in cooler UHIs (“low UHIs”). We hypothesized that heat stress may activate the expression of genes that facilitate greater thermal tolerance in high-UHI cicadas than in those from cooler areas. Differences in the transcriptomes of adult female cicadas from high-UHI, low-UHI, and suburban areas were analyzed at the unheated level, after acute heat stress, and after heat torpor. No noticeable differences in unheated gene expression patterns were observed. After 10 min of acute heat stress, however, low-UHI and suburban cicadas expressed more heat shock protein genes than high-UHI counterparts. More specifically, remarkable changes in the gene expression of cicadas across areas were observed after heat torpor stimulus, as represented by a large number of up- and downregulated genes in the heat torpor groups compared with the 10 min acute heat stress and control groups. High-UHI cicadas expressed the most differentially expressed genes, followed by the low-UHI and suburban cicadas. There was a notable increase in the expression of heat shock, metabolism, and detoxification genes; meanwhile, immune-related, signal transduction, and protein turnover genes were downregulated in high-UHI cicadas versus the other cicada groups. These results suggested that under heat stress, cicadas inhabiting high-UHIs could rapidly express genes related to heat shock, energy metabolism, and detoxification to protect cells from stress-induced damage and to increase their thermal tolerance toward heat stress. The downregulation of apoptosis mechanisms in high-UHI cicadas suggested that there was less cellular damage, which likely contributed to their high tolerance of heat stress.
Sensory Profiling and Liking of Salami and Pancetta from Immunocastrated, Surgically Castrated and Entire Male Pigs
Authors: Żakowska-Biemans Sylwia , Kostyra Eliza , Škrlep Martin , Aluwé Marijke , Čandek-Potokar Marjeta
Published: September 2021

Consumer studies on acceptability of pork from immunocastrates (IC) and entire males (EM) are of primary importance, if these alternatives are to replace surgical castration (SC) of piglets. Data on the sensory traits and consumers acceptance of IC and EM meat products are still limited. Therefore, the purpose of the study was to (1) describe the sensory profile by quantitative descriptive analysis and (2) test the perception and consumer liking of salami (dry-fermented sausage) and pancetta (dry-cured belly) from EM, IC and SC animals. The consumer tests included the scaling method and check-all-that-apply. Profiling showed that EM products were scored lower in the overall sensory quality compared to IC or SC. EM products differed mainly from IC and SC in the intensity of the manure, sweat odor and flavor, persistent impression and texture (hardness, gumminess and easy to fragment). Salami samples did not differ in liking. In pancetta, the differences were significant for odor liking and visual quality (expected liking). Consumers did not perceive EM products as inferior in terms of liking, while sensory profiling indicated differences for boar taint presence and texture. Using meat originating from IC did not result in any differences in consumers acceptance as compared to products from SC.
A Systematic Review of Musculoskeletal Mobilization and Manipulation Techniques Used in Veterinary Medicine
Authors: Haussler Kevin K. , Hesbach Amie L. , Romano Laura , Goff Lesley , Bergh Anna
Published: September 2021

Mobilization and manipulation techniques are often used in small animal and equine practice; however, questions remain concerning indications, dosing and efficacy. A bibliographic search was performed to identify peer-reviewed publications from 1980 to 2020 that evaluated the clinical effects of musculoskeletal mobilization and manipulation techniques in dogs, cats and horses. The search strategy identified 883 papers for review. Inclusion and exclusion criteria were applied. The clinical indications, dosages, outcome parameters, and reported efficacy within each publication were recorded and categorized for comparison with scientific quality assessed according to a standardized grading system. Fourteen articles were included in this systematic review of which 13 were equine and one was a canine study. Seven of these were cohort studies and seven were randomized controlled clinical trials. The canine study involved carpal immobilization-remobilization and all equine studies focused on the effects of passive mobilization (n = 5) or manipulation (n = 8) of the axial skeleton. Study quality was low (n = 4), moderate (n = 7), and high (n = 3) and included a wide array of outcome parameters with varying levels of efficacy and duration of therapeutic effects, which prevented further meta-analysis. Therefore, it was difficult to draw firm conclusions despite all studies reporting positive effects. Optimal technique indications and dosages need to be determined to improve the standardization of these treatment options.
Growth and Slaughter Characteristics of Weaning Male Kids of Turkish Native Goat Breeds
Authors: ŞEN Uğur , ŞİRİN Emre , FİLİK Ayşe Gül , ÖNDER Hasan , PIWCZYŃSKI Dariusz , KOLENDA Magdalena
Published: September 2021

There is little knowledge about the carcass potential of Turkish native goat breeds raised under different rearing conditions. It is necessary to compare the carcass characteristics of these breeds to minimize the effect of the rearing conditions. Therefore, this study aims to compare the growth, slaughter, and carcass characteristics of male kids at weaning age to eliminate the impact of rearing conditions. Kids born to Angora (n = 6), Hair (n = 6), Honamlı (n = 6), and Kilis (n = 6) Turkish native goat breeds, ranging in age from 2–3 years, were slaughtered at 90 days of weaning age and carcass characteristics were determined immediately. There were differences (p < 0.05) among breeds in terms of birth weight (BW) and daily weight gain (DWG) from birth to weaning age. Honamlı kids had higher BW and DWG than those of other breeds (p < 0.05). Similarly, carcass weights (hot–cold) and yields (hot–cold) of Honamlı kids were higher compared to kids born to other breeds (p < 0.05). Additionally, Honamlı and Hair kids had higher longissimus-dorsi (LD), and semitendinosus (ST) muscle weights compared to Kilis and Angora kids. Interestingly, Kilis kids had lower BW and DWG than those of other breeds (p < 0.05). There were significant differences (p < 0.05) among breeds in terms of non-carcass parts and organ weights. Positive correlations were calculated between cross-sectional area and weight (r = 0.793; p < 0.01), length and weight (r = 0.723; p < 0.01), and depth and weight (r = 0.698; p < 0.01) in LD muscle of all kids. A similar correlation trend was calculated for the ST muscle (cross-sectional area and weight; r = 0.699; p < 0.01, length and weight; r = 0.751; p < 0.01, and depth and weight; r = 0.528; p < 0.05) in all kids. In conclusion, the present study results showed that Honamlı kids could be used for fattening material due to their good carcass quality compared to other native breeds.
The Effect of FATP1 on Adipocyte Differentiation in Qinchuan Beef Cattle
Authors: Liu Xuchun , Li Shijun , Wang Liyun , Zhang Weiyi , Wang Yujuan , Gui Linsheng , Zan Linsen , Zhao Chunping
Published: September 2021

FATP1 plays an important role in the regulation of fatty acid metabolism and lipid accumulation. In this study, we investigated the patterns of FATP1 expression in various tissues obtained from calf and adult Qinchuan cattle, and in differentiating adipocytes. Next, we investigated the effect of FATP1 expression on preadipocyte differentiation in Qinchuan cattle using overexpression and interference assays. We also identified the differentially expressed genes (DEGs) and pathways associated with FATP1 overexpression/interference. Our results reveal that FATP1 was broadly expressed in heart, kidney, muscle, small intestine, large intestine, and perirenal fat tissues. While FATP1 overexpression promoted preadipocyte differentiation, fat deposition, and the expression of several genes involved in fat metabolism, FATP1 interference had the opposite effects on adipocyte differentiation. Following FATP1 overexpression and FATP1 interference in adipocytes, RNA-seq analysis was performed to identify DEGs related to fat metabolism. The DEGs identified include SLPI, STC1, SEMA6A, TNFRSF19, SLN, PTGS2, ADCYP1, FADS2, and SCD. Pathway analysis revealed that the DEGs were enriched in the PPAR signaling pathway, AMPK signal pathway, and Insulin signaling pathway. Our results provide an in-depth understanding of the function and regulation mechanism of FAPT1 in fat metabolism.
Impact of Generic Entry on Hospital Antimicrobial Use: A Retrospective Quasi-Experimental Interrupted Time Series Analysis
Authors: Espona Mercè , Echeverria-Esnal Daniel , Hernandez Sergi , Almendral Alexander , Gómez-Zorrilla Silvia , Limon Enric , Ferrandez Olivia , Grau Santiago
Published: September 2021

Background: The impact of antimicrobials generic entry (GE) is controversial. Their introduction could provide an economic benefit yet may also increase their consumption, leading to a higher risk of resistance. Our aim was to analyze the impact of GE on trends of antimicrobial consumption in an acute-care hospital. Methods: A retrospective quasi-experimental interrupted time series analysis was conducted at a 400-bed tertiary hospital in Barcelona, Spain. All antimicrobials for systemic use for which a generic product entered the hospital from January 2000 to December 2019 were included. Antimicrobial consumption was expressed as DDD/100 bed days. Results: After GE, the consumption of cefotaxime (0.09, p < 0.001), meropenem (0.54, p < 0.001), and piperacillin-tazobactam (0.13, p < 0.001) increased, whereas the use of clindamycin (−0.03, p < 0.001) and itraconazole (−0.02, p = 0.01) was reduced. An alarming rise in cefepime (0.004), daptomycin (1.02), and cloxacillin (0.05) prescriptions was observed, despite not achieving statistical significance. On the contrary, the use of amoxicillin (−0.07), ampicillin (−0.02), cefixime (−0.06), fluconazole (−0.13), imipenem–cilastatin (−0.50) and levofloxacin (−0.35) decreased. These effects were noticed beyond the first year post GE. Conclusions: GE led to an increase in the consumption of broad-spectrum molecules. The potential economic benefit of generic antibiotics could be diluted by an increase in resistance. Antimicrobial stewardship should continue to monitor these molecules despite GE.
Efficacy of Novel Bacteriophages against Escherichia coli Biofilms on Stainless Steel
Authors: González-Gómez Jean Pierre , González-Torres Berenice , Guerrero-Medina Pedro Javier , López-Cuevas Osvaldo , Chaidez Cristóbal , Avila-Novoa María Guadalupe , Gutiérrez-Lomelí Melesio
Published: September 2021

Biofilm formation by E. coli is a serious threat to meat processing plants. Chemical disinfectants often fail to eliminate biofilms; thus, bacteriophages are a promising alternative to solve this problem, since they are widely distributed, environmentally friendly, and nontoxic to humans. In this study, the biofilm formation of 10 E. coli strains isolated from the meat industry and E. coli ATCC BAA-1430 and ATCC 11303 were evaluated. Three strains, isolated from the meat contact surfaces, showed adhesion ability and produced extracellular polymeric substances. Biofilms of these three strains were developed onto stainless steel (SS) surfaces and enumerated at 2, 12, 24, 48, and 120 h, and were visualized by scanning electron microscopy. Subsequently, three bacteriophages showing podovirus morphology were isolated from ground beef and poultry liver samples, which showed lytic activity against the abovementioned biofilm-forming strains. SS surfaces with biofilms of 2, 14, and 48 h maturity were treated with mixed and individual bacteriophages at 8 and 9 log10 PFU/mL for 1 h. The results showed reductions greater than 6 log10 CFU/cm2 as a result of exposing SS surfaces with biofilms of 24 h maturity to 9 log10 PFU/mL of bacteriophages; however, the E. coli and bacteriophage strains, phage concentration, and biofilm development stage had significant effects on biofilm reduction (p < 0.05). In conclusion, the isolated bacteriophages showed effectiveness at reducing biofilms of isolated E. coli; however, it is necessary to increase the libraries of phages with lytic activity against the strains isolated from production environments.
Assessing Reduction of Antibiotic Prescribing for Acute, Non-Complicated Infections in Primary Care in Germany: Multi-Step Outcome Evaluation in the Cluster-Randomized Trial ARena
Authors: Poss-Doering Regina , Kronsteiner Dorothea , Kamradt Martina , Kaufmann-Kolle Petra , Andres Edith , Wambach Veit , Bleek Julian , Wensing Michel ,   ARena-Study Group, Szecsenyi Joachim
Published: September 2021

The three-armed cluster-randomized trial ARena (sustainable reduction of antibiotic-induced antimicrobial resistance) aimed to foster appropriate antibiotic use and reduce overprescribing in German ambulatory care to counter antibiotic resistance. Multi-faceted interventions targeted primary care physicians, teams and patients. This study examined the effectiveness of the implementation program. ARena was conducted in 14 primary care networks with 196 practices. All arms received data-based feedback on antibiotics prescribing and quality circles. Arms II and III received different add-on components each. Primary outcome examined is the prescribing rate for systemic antibiotics for cases with non-complicated acute infections (upper respiratory tract, bronchitis, sinusitis, tonsillitis, otitis media). Secondary outcomes refer to the prescribing of quinolones and guideline-recommended antibiotics. Based on pseudonymized quarterly claims data, mixed logistic regression models examined pre-post intervention antibiotic prescribing rate changes and compared to matched standard care. A significant rate reduction (arm I 11.7%; arm II 9.9%; arm III 12.7%) and significantly lower prescribing rates were observed for all arms (20.1%, 18.9% and 23.6%) compared to matched standard care (29.4%). Fluoroquinolone prescribing was reduced in all intervention arms and rates for recommended substances generally increased. No significant post-interventional difference between intervention arms was detected. Findings indicate implementation program impact compared to standard care.
Piglet Gut and in-Barn Manure from Farms on a Raised without Antibiotics Program Display Reduced Antimicrobial Resistance but an Increased Prevalence of Pathogens
Authors: Chekabab Samuel M. , Lawrence John R. , Alvarado Alvin C. , Predicala Bernardo Z. , Korber Darren R.
Published: September 2021

In response to new stringent regulations in Canada regarding the use of antibiotics in animal production, many farms have implemented practices to produce animals that are raised without antibiotics (RWA) from birth to slaughter. This study aims to assess the impact of RWA production practices on reducing the actual total on-farm use of antibiotics, the occurrence of pathogens, and the prevalence of antimicrobial resistance (AMR). A 28-month longitudinal surveillance of farms that adopted the RWA program and conventional farms using antibiotics in accordance with the new regulations (non-RWA) was conducted by collecting fecal samples from 6-week-old pigs and composite manure from the barn over six time points and applying whole-genome sequencing (WGS) to assess the prevalence of AMR genes as well as the abundance of pathogens. Analysis of in-barn drug use records confirmed the decreased consumption of antibiotics in RWA barns compared to non-RWA barns. WGS analyses revealed that RWA barns had reduced the frequency of AMR genes in piglet feces and in-barn manure. However, metagenomic analyses showed that RWA barns had a significant increase in the frequency of pathogenic Firmicutes in fecal samples and pathogenic Proteobacteria in barn manure samples.
Antibiotic Use for Febrile Illness among Under-5 Children in Bangladesh: A Nationally Representative Sample Survey
Authors: Samir Nora , Hassan Md. Zakiul , Biswas Md. Abdullah Al Jubayer , Chowdhury Fahmida , Akhtar Zubair , Lingam Raghu , Banu Sayera , Homaira Nusrat
Published: September 2021

Fever in children under five years of age is a common and predominantly self-limiting sign of illness. However, in low- and middle-income countries, antibiotics are frequently used in febrile children, although these children may not benefit from antibiotics. In this study, we explored the prevalence of, and factors associated with, antibiotic use in children under five years old with febrile illness in Bangladesh. We analysed data from the 2017–2018 Bangladesh Demographic and Health Survey to determine the prevalence of antibiotic use in children under five years of age with a febrile illness. We used a causal graph and performed a multivariable logistical regression to identify the factors associated with antibiotic use in children under five years old with febrile illness in Bangladesh. Of the 2784 children aged less than five years with fever included in our analysis, 478 (17%, 95% CI 15% to 19%) received antibiotics. Unqualified sources, including unqualified providers and pharmacies, contributed to 60% of antibiotic prescriptions in children with fever, followed by the private medical sector (29%) and the public sector (23%). The highest use of antibiotics was found in children under six months of age (25%). Children with parents who completed secondary or higher education were more likely to receive antibiotics (adjusted OR (aOR): 2.61 (95% CI 1.63 to 4.16)) than children whose parents did not complete primary education. Educational interventions promoting rational use of antibiotics and improved regulations governing over the counter purchase of antibiotics in Bangladesh may improve antibiotic dispensing practices.
Anti-Cancer and Anti-Inflammatory Potential of the Green Synthesized Silver Nanoparticles of the Red Sea Sponge Phyllospongia lamellosa Supported by Metabolomics Analysis and Docking Study
Authors: Al-Khalaf Areej A. , Hassan Hossam M. , Alrajhi Aisha M , Mohamed Rania Ali El Hadi , Hozzein Wael N.
Published: September 2021

Background: The Red Sea sponges have been endorsed as a plentiful source of bioactive compounds with promising anti-cancer and anti-inflammatory activities; therefore, exploring their potential as a source of anti-cancer metabolites has stimulated a growing research interest. Purpose: To investigate the anti-cancer and anti-inflammatory potential of the Red Sea sponges, in their bulk and silver nanostructure. Metabolomics analysis of the selected sponge followed by molecular docking studies, will be conducted to explore and predict the secondary metabolites that might provide its capability of inhibiting cancer. Materials and Methods: We prepared a chloroform extract (CE) and ethyl acetate extract (EE) of the Red Sea sponge Phyllospongia lamellosa synthesized silver nanoparticles. The prepared silver nanoparticles were characterized through UV–vis spectrophotometric, transmission electron microscopy (TEM), and Fourier-transform infrared spectroscopy (FTIR) analyses. Testing for their anti-cancer activities was performed against MCF-7, MDB-231, and MCF-10A cells. Anti-inflammatory activity against COX-1 and 2 was assessed. Furthermore, liquid chromatography–mass spectrometry (LC–MS)-based metabolomics analysis and molecular docking were also applied.
Antimicrobial Resistance Profiles and Genetic Typing of Salmonella Serovars from Chicken Embryos in China
Authors: Xu Yaohui , Zhou Xiao , Jiang Zenghai , Qi Yaru , Ed-Dra Abdelaziz , Yue Min
Published: September 2021

Salmonella continues to be a major food and public health burden worldwide that can threaten human health via eating contaminated meats, particularly those originating from chicken. In this study, the antimicrobial resistance profiles, epidemiological characteristics of resistance genes, and pulsed field gel electrophoresis (PFGE-XbaI) typing of 120 non-Pullorum/Gallinarum Salmonella isolates recovered from chicken embryos in Henan province were determined. The antimicrobial resistant phenotypes and evaluation of the extended-spectrum beta-lactamases (ESBLs) producing strains of Salmonella were investigated by the Kirby–Bauer test and the double-disk synergy test. Additionally, 37 antimicrobial resistance genes encoding resistance to five different categories, including aminoglycosides, cephalosporins, sulphonamides, tetracyclines, and β-lactams, were examined by conventional PCR. However, genotyping analysis was conducted by macro-restriction using enzyme XbaI followed by the separation of the restricted DNA fragments by PFGE. The results of this study showed that the studied Salmonella strains were highly resistant to ampicillin (66.67%) and sulfisoxazole (66.67%), while they were all susceptible to meropenem, imipenem, colistin, and chloramphenicol. Additionally, 67.5% (81/120) of the studied strains were multidrug resistant, and 21.67% (26/120) were phenotypically confirmed as ESBLs positive. The statistical analysis showed that resistance depends on the serovars, and ESBLs positive strains showed more multi-resistance than ESBLs negative strains (p < 0.05). The genotypic antimicrobial resistance showed the detection of 14 among the 37 tested genes, and the concordance between genotypic and phenotypic antimicrobial resistance ranged from 0% to 100% depending on the serovars. However, the PFGE-XbaI typing results showed that the examined Salmonella strains were divided into 22 individual subtypes and were grouped in nine clusters, with similarity values ranging from 64.7% to 100%. From this study, we can conclude that the antimicrobial resistance of Salmonella serovars isolated from chicken embryos in Henan province was alarming, with rigorous multidrug resistance, which requires the urgent mitigation of the use of antimicrobial drugs in chicken hatcheries. Additionally, our results showed evidence of the presence of different PFGE patterns among the studied Salmonella serovars, suggesting the presence of different sources of contamination.
Virulence, Antimicrobial Resistance and Biofilm Production of Escherichia coli Isolates from Healthy Broiler Chickens in Western Algeria
Authors: Benameur Qada , Gervasi Teresa , Giarratana Filippo , Vitale Maria , Anzà Davide , La Camera Erminia , Nostro Antonia , Cicero Nicola , Marino Andreana
Published: September 2021

The aim of this study was to assess the virulence, antimicrobial resistance and biofilm production of Escherichia coli strains isolated from healthy broiler chickens in Western Algeria. E. coli strains (n = 18) were identified by matrix-assisted laser desorption–ionization time-of-flight mass spectrometry. Susceptibility to 10 antibiotics was determined by standard methods. Virulence and extended-spectrum β-lactamase (ESBL) genes were detected by PCR. The biofilm production was evaluated by microplate assay. All the isolates were negative for the major virulence/toxin genes tested (rfbE, fliC, eaeA, stx1), except one was stx2-positive. However, all were resistant to at least three antibiotics. Ten strains were ESBL-positive. Seven carried the β-lactamase blaTEM gene only and two co-harbored blaTEM and blaCTX-M−1 genes. One carried the blaSHV gene. Among the seven strains harboring blaTEM only, six had putative enteroaggregative genes. Two contained irp2, two contained both irp2 and astA, one contained astA and another contained aggR, astA and irp2 genes. All isolates carrying ESBL genes were non-biofilm producers, except one weak producer. The ESBL-negative isolates were moderate biofilm producers and, among them, two harbored astA, two irp2, and one aggR, astA and irp2 genes. This study highlights the spread of antimicrobial-resistant E. coli strains from healthy broiler chickens in Western Algeria.
Paralemnolins X and Y, New Antimicrobial Sesquiterpenoids from the Soft Coral Paralemnalia thyrsoide
Authors: Elshamy Abdelsamed I. , Mohamed Tarik A. , Elkady Eman M. , Saleh Ibrahim A. , El-Beih Ahmed A. , Alhammady Montaser A. , Ohta Shinji , Umeyama Akemi , Paré Paul W. , Hegazy Mohamed-Elamir F.
Published: September 2021

The organic extracts of the Red Sea soft coral Paralemnalia thyrsoides has led to the identification of two neolemnane-type sesquiterpenoids: paralemnolins X and Y (1, 2). In addition to these newly characterized compounds, ten known metabolites (3–12) were isolated. Previously reported compounds were elucidated by literature comparison of spectroscopic data (1D and 2D NMR as well as MS data). In vitro antimicrobial activity was investigated for compounds (1–12) against Staphylococcus aureus, Escherichia coli, Candida albicans and Aspergillus niger. Compound 5 showed antimicrobial activity against all assayed microorganisms.
Enhancement of Antibiofilm Activity of Ciprofloxacin against Staphylococcus aureus by Administration of Antimicrobial Peptides
Authors: Yasir Muhammad , Dutta Debarun , Willcox Mark D. P.
Published: September 2021

Staphylococcus aureus can develop resistance by mutation, transfection or biofilm formation. Resistance was induced in S. aureus by growth in sub-inhibitory concentrations of ciprofloxacin for 30 days. The ability of the antimicrobials to disrupt biofilms was determined using crystal violet and live/dead staining. Effects on the cell membranes of biofilm cells were evaluated by measuring release of dyes and ATP, and nucleic acids. None of the strains developed resistance to AMPs while only S. aureus ATCC 25923 developed resistance (128 times) to ciprofloxacin after 30 passages. Only peptides reduced biofilms of ciprofloxacin-resistant cells. The antibiofilm effect of melimine with ciprofloxacin was more (27%) than with melimine alone at 1X MIC (p < 0.001). Similarly, at 1X MIC the combination of Mel4 and ciprofloxacin produced more (48%) biofilm disruption than Mel4 alone (p < 0.001). Combinations of either of the peptides with ciprofloxacin at 2X MIC released ≥ 66 nM ATP, more than either peptide alone (p ≤ 0.005). At 2X MIC, only melimine in combination with ciprofloxacin released DNA/RNA which was three times more than that released by melimine alone (p = 0.043). These results suggest the potential use of melimine and Mel4 with conventional antibiotics for the treatment of S. aureus biofilms.
Inhibitory Effects of Six Types of Tea on Aging and High-Fat Diet-Related Amyloid Formation Activities
Authors: Wan Juan , Feng Meiyan , Pan Wenjing , Zheng Xin , Xie Xinya , Hu Baozhu , Teng Cuiqin , Wang Yingzi , Liu Zhonghua , Wu Jianhua , Cai Shuxian
Published: September 2021

Aging and lipid metabolism disorders promote the formation and accumulation of amyloid with β-sheet structure, closely related to cardiovascular disease, senile dementia, type 2 diabetes, and other senile degenerative diseases. In this study, five representative teas were selected from each of the six types of tea, and a total of 30 teas were selected to evaluate the inhibitory activities on the formation of aging-related amyloid in vitro. The results showed that the 30 teas had a significant inhibitory effect on the formation activity on aging-related amyloid at the protein level in vitro. Although the content of catechins is relatively low, black tea and dark tea still have significant antioxidant activity and inhibit the formation of amyloid. A high-fat diet established the model of lipid metabolism disorder in premature aging SAMP8 mice, and these mice were gavaged different tea water extracts. The results showed that different tea types have a significant inhibitory effect on the formation of β-amyloid and Aβ42 mediated by age-related lipid metabolism disorders, and the in vivo activity of fully fermented teas was better than that of green tea. The action mechanism was related to antioxidation, anti-inflammatory, and improving lipid metabolism.
Resveratrol Protects against Cerebral Ischemic Injury via Restraining Lipid Peroxidation, Transition Elements, and Toxic Metal Levels, but Enhancing Anti-Oxidant Activity
Authors: Lin Ming-Cheng , Liu Chien-Chi , Lin Yu-Chen , Liao Chin-Sheng
Published: September 2021

Cerebral ischemia is related to increased oxidative stress. Resveratrol displays anti-oxidant and anti-inflammatory properties. The transition elements iron (Fe) and copper (Cu) are indispensable for the brain but overload is deleterious to brain function. Aluminum (Al) and arsenic (As) are toxic metals that seriously threaten brain health. This study was conducted to elucidate the correlation of the neuroprotective mechanism of resveratrol to protect cerebral ischemic damage with modulation of the levels of lipid peroxidation, anti-oxidants, transition elements, and toxic metals. Experimentally, 20 mg/kg of resveratrol was given once daily for 10 days. The cerebral ischemic operation was performed via occlusion of the right common carotid artery together with the right middle cerebral artery for 60 min followed by homogenization of the brain cortex and collection of supernatants for biochemical analysis. In the ligation group, levels of malondialdehyde, Fe, Cu, Al, and As increased but those of the anti-oxidants superoxide dismutase and catalase decreased. Pretreating rats with resveratrol before ischemia significantly reversed these effects. Our findings highlight the association of overload of Fe, Cu, As, and Al with the pathophysiology of cerebral ischemia. In conclusion, resveratrol protects against cerebral ischemic injury via restraining lipid peroxidation, transition elements, and toxic metals, but increasing anti-oxidant activity.
Association of Urinary and Dietary Selenium and of Serum Selenium Species with Serum Alanine Aminotransferase in a Healthy Italian Population
Authors: Urbano Teresa , Filippini Tommaso , Lasagni Daniela , De Luca Tiziana , Grill Peter , Sucato Sabrina , Polledri Elisa , Djeukeu Noumbi Guy , Malavolti Marcella , Santachiara Annalisa , Pertinhez Thelma A. , Baricchi Roberto , Fustinoni Silvia , Michalke Bernhard , Vinceti Marco
Published: September 2021

The trace element selenium is of considerable interest due to its toxic and nutritional properties, which markedly differ according to the dose and the chemical form. It has been shown that excess selenium intake increases the risk of type 2 diabetes and, possibly, other metabolic diseases like hyperlipidemia and non-alcoholic fatty liver disease (NAFLD). For the latter, however, epidemiologic evidence is still limited. We carried out a cross-sectional study recruiting 137 healthy blood donors living in Northern Italy and assessed their exposure to selenium through different methods and measuring serum selenium species. We performed linear and spline regression analyses to assess the relation of selenium and its forms with serum alanine aminotransferase (ALT) levels, a marker of NAFLD. Urinary selenium levels were positively and somewhat linearly correlated with ALT (beta regression coefficient (β) 0.11). Conversely, the association of dietary selenium intake with ALT was positive up to 100 µg/day and null above that amount (β 0.03). Total serum selenium was inversely associated with ALT up to 120 µg/L, and slightly positive above that amount. Concerning the different serum selenium species, ALT positively correlated with two organic forms, selenocysteine (β 0.27) and glutathione peroxidase-bound selenium (β 0.09), showed a U-shaped relation with the inorganic tetravalent form, selenite, and an inverse association with human serum albumin-bound selenium (β −0.56). Our results suggest that overall exposure to selenium, and more specifically to some of its chemical forms, is positively associated with ALT, even at levels so far generally considered to be safe. Our findings add to the evidence suggesting that low-dose selenium overexposure is associated with NAFLD.