bluuebunny/crossref_metadata_2025 huggingface dataset:
The “Beacon” Structural Model of Protein Folding: Application for Trp-Cage in Water
Authors: Sun Qiang , He Xian , Fu Yanfang
Published: July 2023

Protein folding is a process in which a polypeptide must undergo folding process to obtain its three-dimensional structure. Thermodynamically, it is a process of enthalpy to overcome the loss of conformational entropy in folding. Folding is primarily related to hydrophobic interactions and intramolecular hydrogen bondings. During folding, hydrophobic interactions are regarded to be the driving forces, especially in the initial structural collapse of a protein. Additionally, folding is guided by the strong interactions within proteins, such as intramolecular hydrogen bondings related to the α-helices and β-sheets of proteins. Therefore, a protein is divided into the folding key (FK) regions related to intramolecular hydrogen bondings and the non-folding key (non-FK) regions. Various conformations are expected for FK and non-FK regions. Different from non-FK regions, it is necessary for FK regions to form the specific conformations in folding, which are regarded as the necessary folding pathways (or “beacons”). Additionally, sequential folding is expected for the FK regions, and the intermediate state is found during folding. They are reflected on the local basins in the free energy landscape (FEL) of folding. To demonstrate the structural model, molecular dynamics (MD) simulations are conducted on the folding pathway of the TRP-cage in water.
Quantitative Analysis of Flavonoids in Fruiting Bodies of Sanghuangporus Using Ultra-High-Performance Liquid Chromatography Coupled with Triple Quadrupole Mass Spectrometry
Authors: Zhou Zhongjing , Deng Zhiping , Liang Shuang , Zou Xiaowei , Teng Yi , Wang Weike , Fu Lizhong
Published: July 2023

A rapid, precise, and dependable method for quantifying flavonoids in the fruiting bodies of Sanghuangporus was established using ultra-high-performance liquid chromatography coupled with triple quadrupole mass spectrometry (UHPLC-QQQ-MS/MS). Separation was achieved using a ZORBAX Eclipse Plus C18 column (1.8 μm, 3.0 mm × 100 mm) with a 15 min gradient of a mobile phase consisting of 0.01% aqueous formic acid and 2 mm/L ammonium formate (mobile phase A), and 0.01% formic acid and 2 mm/L ammonium formate in methanol (mobile phase B). A mass spectrometry analysis was performed using the multiple reaction monitoring (MRM) mode with an electrospray ion source. This method enabled the simultaneous detection of 10 flavonoids (sakuranetin, quercitrin, myricitrin, kaempferol, luteolin, rutin, hyperoside, kaempferol-3-O-rutinoside, catechin, and catechin gallate) in the fruiting bodies of Sanghuangporus. Additionally, we applied this method to analyze the flavonoid content in fruiting bodies of various Sanghuangporus species. The results revealed substantial variations in flavonoid content, up to a 100-fold difference, among different species, with myricitrin, hyperoside, and rutin identified as the most abundant flavonoids. This protocol serves as a valuable tool for quantifying flavonoid compounds in different Sanghuangporus species or under diverse cultivation conditions, particularly for identifying species with high levels of specific flavonoid compounds.
Analysis of Antioxidant Constituents of Filtering Infusions from Oak (Quercus sideroxyla Bonpl. and Quercus eduardii Trel.) and Yerbaniz (Tagetes lucida (Sweet) Voss) as Monoamine Oxidase Inhibitors
Authors: Álvarez Saúl Alberto , Rocha-Guzmán Nuria Elizabeth , Sánchez-Burgos Jorge Alberto , Gallegos-Infante José Alberto , Moreno-Jiménez Martha Rocío , González-Laredo Rubén Francisco , Solís-González Santiago
Published: July 2023

The antioxidant constituents of ancestral products with ethnobotanical backgrounds are candidates for the study of filtering infusions to aid in pharmacotherapies focused on the treatment of depression and anxiety. Monoamine oxidase A (MAO-A) is an enzyme that regulates the metabolic breakdown of serotonin and noradrenaline in the nervous system. The goal of this study was to evaluate in vitro and in silico the effect of antioxidant constituents of filtering infusions from yerbaniz (Tagetes lucida (Sweet) Voss) and oak (Quercus sideroxyla Bonpl. and Quercus eduardii Trel.) as monoamine oxidase inhibitors. Materials were dried, ground, and mixed according to a simplex–centroid mixture design for obtaining infusions. Differential analysis of the phenolic constituent’s ratio in the different infusions indicates that among the main compounds contributing to MAO-A inhibition are the gallic, chlorogenic, quinic, and shikimic acids, quercetin glucuronide and some glycosylated derivatives of ellagic acid and ellagic acid methyl ether. Infusions of Q. sideroxyla Bonpl. leaves, because of their content (99.45 ± 5.17 µg/mg) and synergy between these constituents for MAO-A inhibition (52.82 ± 3.20%), have the potential to treat depression and anxiety. Therefore, future studies with pharmacological approaches are needed to validate them as therapeutic agents with applications in mental health care.
Stepwise Targeted Matching Strategy for Comprehensive Profiling of Xanthohumol Metabolites In Vivo and In Vitro Using UHPLC-Q-Exactive Orbitrap Mass Spectrometer
Authors: Yuan Xiaoqing , Wang Hong , Song Shuyi , Qiu Lili , Lan Xianming , Dong Pingping , Zhang Jiayu
Published: July 2023

Xanthohumol (XN), a natural prenylated flavonoid extracted and isolated from the hop plant (Humulus lupulus), possesses diverse pharmacological activities. Although the metabolites of XN have been investigated in the previous study, a comprehensive metabolic profile has been insufficient in vivo or in vitro until now. The current study was aimed at systematically elucidating the metabolic pathways of XN after oral administration to rats. Herein, a UHPLC-Q-Exactive Orbitrap MS was adopted for the potential metabolites detection. A stepwise targeted matching strategy for the overall identification of XN metabolites was proposed. A metabolic net (53 metabolites included) on XN in vivo and in vitro, as well as the metabolic profile investigation, were designed, preferably characterizing XN metabolites in rat plasma, urine, liver, liver microsomes, and feces. On the basis of a stepwise targeted matching strategy, the net showed that major in vivo metabolic pathways of XN in rats include glucuronidation, sulfation, methylation, demethylation, hydrogenation, dehydrogenation, hydroxylation, and so on. The proposed metabolic pathways in this research will provide essential data for further pharmaceutical studies of prenylated flavonoids and lay the foundation for further toxicity and safety studies.
Recent Advances in Deep Learning for Protein-Protein Interaction Analysis: A Comprehensive Review
Authors: Lee Minhyeok
Published: July 2023

Deep learning, a potent branch of artificial intelligence, is steadily leaving its transformative imprint across multiple disciplines. Within computational biology, it is expediting progress in the understanding of Protein–Protein Interactions (PPIs), key components governing a wide array of biological functionalities. Hence, an in-depth exploration of PPIs is crucial for decoding the intricate biological system dynamics and unveiling potential avenues for therapeutic interventions. As the deployment of deep learning techniques in PPI analysis proliferates at an accelerated pace, there exists an immediate demand for an exhaustive review that encapsulates and critically assesses these novel developments. Addressing this requirement, this review offers a detailed analysis of the literature from 2021 to 2023, highlighting the cutting-edge deep learning methodologies harnessed for PPI analysis. Thus, this review stands as a crucial reference for researchers in the discipline, presenting an overview of the recent studies in the field. This consolidation helps elucidate the dynamic paradigm of PPI analysis, the evolution of deep learning techniques, and their interdependent dynamics. This scrutiny is expected to serve as a vital aid for researchers, both well-established and newcomers, assisting them in maneuvering the rapidly shifting terrain of deep learning applications in PPI analysis.
Synthesis and Properties of New 3-Heterylamino-Substituted 9-Nitrobenzanthrone Derivatives
Authors: Maļeckis Armands , Cvetinska Marija , Puckins Aleksandrs , Osipovs Sergejs , Sirokova Jelizaveta , Belyakov Sergey , Kirilova Elena
Published: July 2023

In the present study, new fluorophores based on disubstituted benzanthrone derivatives were designed starting from 9-nitro-3-bromobenzanthrone with nucleophilic substitution of the bromine atom with some secondary cyclic amines. It has been found that this reaction is positively affected by the presence of a nitro group in comparison with 3-bromobenzanthrone. The new compounds exhibit intense absorption and pronounced luminescent properties in various organic solvents. In this regard, their photophysical properties were evaluated with an experimental study of the solvatochromic behavior of the obtained compounds in various solvents. It has recently been found that the addition of an electron-withdrawing nitro group to the benzanthrone core increases its first- and second-order hyperpolarizability. Such dyes can be used in the fabrication of optical limiter devices. Therefore, the developed fluorescent molecules have a potential prospect for extensive application in optoelectronics.
A New and Profitable Protocol to DNA Extraction in Limnospira maxima
Authors: Pineda-Rodriguez Yirlis Yadeth , Pompelli Marcelo F. , Jarma-Orozco Alfredo , Rodríguez Novisel Veitía , Rodriguez-Paez Luis Alfonso
Published: July 2023

Limnospira maxima is a remarkable organism showing great potential as a versatile and sustainable food source, offering a powerful solution to address the pressing issues of malnutrition and undernourishment worldwide. L. maxima contains high amounts of proteins, vitamins, minerals, and essential fatty acids. It can be grown in both bioreactors and open systems; however, before considering industrial production, optimization studies of the cultivation must be conducted to obtain knowledge about the ideal environmental conditions. Additionally, for the molecular typing of L. maxima strains and their industrial scaling, high-quality and large quantity DNA extraction is required. Notwithstanding, DNA extraction from L. maxima can be challenging due to the low amount of DNA in cells and the presence of difficult-to-remove substances such as polysaccharides and polyphenols. In this study, the quality and quantity of DNA extracted from two types of L. maxima samples (Limnospira maxima strain SISCA accession GenBank: OR195505.1) were evaluated using three commercially available DNA extraction kits and two types of input biological material. The results showed that Pbact-P kit had the highest quantity and quality of DNA, while CTAB-P allowed for a higher quantity and quality of RNA, making them optimal protocols for nucleic acid extraction to improve PCR, rt-PCR, and genome sequencing of L. maxima compared with other extraction methods.
Highly Efficient Photo-Fenton Ag/Fe2O3/BiOI Z-Scheme Heterojunction for the Promoted Degradation of Tetracycline
Authors: Zheng Jingjing , Liu Guoxia , Jiao Zhengbo
Published: July 2023

Novel Ag/Fe2O3/BiOI Z-scheme heterostructures are first fabricated through a facile hydrothermal method. The composition and properties of as-synthesized Ag/Fe2O3/BiOI nanocomposites are characterized by powder X-ray diffraction, scanning electron microscopy, high-resolution transmission electron microscopy, UV-Vis diffuse reflectance spectra, etc. The Ag/Fe2O3/BiOI systems exhibit remarkable degradation performance for tetracycline (TC). In particular, the composite (Ag/Fe2O3/BiOI-2) shows the highest efficiency when the contents of Ag and α-Fe2O3 are 2 wt% and 15%, respectively. The effects of operating parameters, including the solution pH, H2O2 concentration, TC concentration, and catalyst concentration, on the degradation efficiency are investigated. The photo-Fenton mechanism is studied, and the results indicated that •O2− is the main active specie for TC degradation. The enhanced performance of Ag/Fe2O3/BiOI heterostructures may be ascribed to the synergic effect between photocatalysis and the Fenton reaction. The formation of Ag/Fe2O3/BiOI heterojunction is beneficial to the transfer and separation of charge carriers. The photo-generated electrons accelerate the Fe2+/Fe3+ cycle and create the reductive reaction of H2O2. This research reveals that the Ag/Fe2O3/BiOI composite possesses great potential in wastewater treatment.
An Ethyl-Thioglycolate-Functionalized Fe3O4@ZnS Magnetic Fluorescent Nanoprobe for the Detection of Ag+ and Its Applications in Real Water Solutions
Authors: Chen Xin , Chen Jie , Ma Mingshuo , Yu Shihua , Liu Zhigang , Zeng Xiaodan
Published: July 2023

Ethyl-thioglycolate-modified Fe3O4@ZnS nanoparticles (Fe3O4@ZnS-SH) were successfully prepared using a simple chemical precipitation method. The introduction of ethyl thioglycolate better regulated the surface distribution of ZnS, which can act as a recognition group and can cause a considerable quenching of the fluorescence intensity of the magnetic fluorescent nanoprobe, Fe3O4@ZnS-SH. Benefiting from stable fluorescence emission, the magnetic fluorescent nanoprobe showed a highly selective fluorescent response to Ag+ in the range of 0–400 μM, with a low detection limit of 0.20 μM. The magnetic fluorescent nanoprobe was used to determine the content of Ag+ in real samples. A simple and environmentally friendly approach was proposed to simultaneously achieve the enrichment, detection, and separation of Ag+ and the magnetic fluorescent nanoprobe from an aqueous solution. These results may lead to a wider range of application prospects of Fe3O4 nanomaterials as base materials for fluorescence detection in the environment.
A Broadband Photodetector Based on PbS Quantum Dots and Graphene with High Responsivity and Detectivity
Authors: Luo Mutan , Chen Run , Zhu Zhaowei , Cheng Chuantong , Ning Xin , Huang Beiju
Published: July 2023

A high-efficiency photodetector consisting of colloidal PbS quantum dots (QDs) and single-layer graphene was prepared in this research. In the early stage, PbS QDs were synthesized and characterized, and the results showed that the product conformed with the characteristics of high-quality PbS QDs. Afterwards, the photodetector was derived through steps, including the photolithography and etching of indium tin oxide (ITO) electrodes and the graphene active region, as well as the spin coating and ligand substitution of the PbS QDs. After application testing, the photodetector, which was prepared in this research, exhibited outstanding properties. Under visible and near-infrared light, the highest responsivities were up to 202 A/W and 183 mA/W, respectively, and the highest detectivities were up to 2.24 × 1011 Jones and 2.47 × 108 Jones, respectively, with light densities of 0.56 mW/cm2 and 1.22 W/cm2, respectively. In addition to these results, the response of the device and the rise and fall times for the on/off illumination cycles showed its superior performance, and the fastest response times were approximately 0.03 s and 1.0 s for the rise and fall times, respectively. All the results illustrated that the photodetector based on PbS and graphene, which was prepared in this research, possesses the potential to be applied in reality.
Hospital Outcomes in Patients Hospitalized for COVID-19 Pneumonia: The Effect of SARS-CoV-2 Vaccination and Vitamin D Status
Authors: Sanecka Martyna , Youssef Modar , Abdulsalam Mohammad , Raza Syed F. , Qadeer Abdul , Ioana Julia , Aldoresi Alya , Shah Syed I. , Al Lawati Abdul , Feely Joseph , Tormey William P. , O’Neill Eoghan , Cormican Liam J. , Judge Eoin P. , McCartney Daniel M. A. , Faul John L.
Published: July 2023

SARS-CoV-2 vaccination promises to improve outcomes for patients with COVID-19 pneumonia (most notably those with advanced age and at high risk for severe disease). Here, we examine serum 25-Hydroxyvitamin D (25(OH)D) status and outcomes in both old (>70 years) and young vaccinated (n = 80) and unvaccinated (n = 91) subjects, who were hospitalized due to COVID-19 pneumonia in a single center (Connolly Hospital Dublin). Outcomes included ICU admission and mortality. Serum 25(OH)D levels were categorized as D30 (<30 nmol/L), D40 (30–49.99 nmol/L) and D50 (≥50 nmol/L). In multivariate analyses, D30 was independently associated with ICU admission (OR: 6.87 (95% CI: 1.13–41.85) (p = 0.036)) and mortality (OR: 24.81 (95% CI: 1.57–392.1) (p = 0.023)) in unvaccinated patients, even after adjustment for major confounders including age, sex, obesity and pre-existing diabetes mellitus. While mortality was consistently higher in all categories of patients over 70 years of age, the highest observed mortality rate of 50%, seen in patients over 70 years with a low vitamin D state (D30), appeared to be almost completely corrected by either vaccination, or having a higher vitamin D state, i.e., mortality was 14% for vaccinated patients over 70 years with D30 and 16% for unvaccinated patients over 70 years with a 25(OH)D level greater than 30 nmol/L. We observe that high mortality from COVID-19 pneumonia occurs in older patients, especially those who are unvaccinated or have a low vitamin D state. Recent vaccination or having a high vitamin D status are both associated with reduced mortality, although these effects do not fully mitigate the mortality risk associated with advanced age.
The Role of Vitamin D in Neuroprotection in Multiple Sclerosis: An Update
Authors: Sangha Amarpreet , Quon Michaela , Pfeffer Gerald , Orton Sarah-Michelle
Published: July 2023

Multiple sclerosis (MS) is a complex neurological condition that involves both inflammatory demyelinating and neurodegenerative components. MS research and treatments have traditionally focused on immunomodulation, with less investigation of neuroprotection, and this holds true for the role of vitamin D in MS. Researchers have already established that vitamin D plays an anti-inflammatory role in modulating the immune system in MS. More recently, researchers have begun investigating the potential neuroprotective role of vitamin D in MS. The active form of vitamin D, 1,25(OH)2D3, has a range of neuroprotective properties, which may be important in remyelination and/or the prevention of demyelination. The most notable finding relevant to MS is that 1,25(OH)2D3 promotes stem cell proliferation and drives the differentiation of neural stem cells into oligodendrocytes, which carry out remyelination. In addition, 1,25(OH)2D3 counteracts neurodegeneration and oxidative stress by suppressing the activation of reactive astrocytes and M1 microglia. 1,25(OH)2D3 also promotes the expression of various neuroprotective factors, including neurotrophins and antioxidant enzymes. 1,25(OH)2D3 decreases blood–brain barrier permeability, reducing leukocyte recruitment into the central nervous system. These neuroprotective effects, stimulated by 1,25(OH)2D3, all enhance neuronal survival. This review summarizes and connects the current evidence supporting the vitamin D-mediated mechanisms of action for neuroprotection in MS.
The Effect of Cinnamon on Glycolipid Metabolism: A Dose–Response Meta-Analysis of Randomized Controlled Trials
Authors: Yu Tingqing , Lu Kun , Cao Xinyi , Xia Hui , Wang Shaokang , Sun Guiju , Chen Liang , Liao Wang
Published: July 2023

(1) Background: The effect of cinnamon on the regulation of glycolipid levels in type 2 diabetic patients is still controversial, and there is a lack of research on the dose–response relationship between cinnamon and glycolipid indicators in type 2 diabetic patients. (2) Methods: This dose–response meta-analysis was performed to explore the effect of the cinnamon intervention on glycolipid metabolism. We conducted a comprehensive database search for literature published before November 2022. Nonlinear models were used for dose–response relationship analysis. (3) Results: We identified that a cinnamon intervention was effective in controlling triglyceride (TG) levels (mean difference = −7.31; 95%CI: −12.37, −2.25, p = 0.005) and low-density lipoprotein cholesterol (LDL-C) levels (mean difference = −6.78; 95%CI: −11.35, −2.22, p = 0.004) in type 2 diabetic patients; however, it also was able to increase high-density lipoprotein cholesterol (HDL-C) levels in patients with type 2 diabetes (mean difference = 1.53; 95%CI: 1.01, 2.05, p < 0.001). However, the cinnamon intervention had no significant effect on the level of fasting blood glucose, glycated hemoglobin (HbA1c), or total cholesterol (TC) levels. We found a significant effect of the cinnamon intervention dose on the TG level (p-nonlinearity = 0.016) and LDL-C (p-nonlinearity = 0.019) in the nonlinear dose–response analysis. In the subgroup analysis, we found a hypoglycemic effect with the cinnamon dose ≤1200 mg (mean difference = −11.1, 95%CI: −14.64, −7.58, p < 0.001). (4) Conclusion: Cinnamon intervention may be beneficial in lowering TG and LDL-C levels while enhancing HDL-C levels, and the dosage of the intervention was an important factor in influencing the TG and LDL-C levels.
Can Nutrition Contribute to a Reduction in Sarcopenia, Frailty, and Comorbidities in a Super-Aged Society?
Authors: Yoshida Sadao , Shiraishi Ryo , Nakayama Yuki , Taira Yasuko
Published: July 2023

Many countries are facing the advent of super-aging societies, where sarcopenia and frailty will become pertinent problems. The prevalence of comorbidities is a major problem in countries with aged populations as elderly people suffer from various diseases, such as diabetes, heart failure, chronic kidney disease and dementia. All of these diseases are associated with sarcopenia and frailty, and they frequently cause falls, fractures, and a decline in activities of daily living. Fractures in the elderly people are associated with bone fragility, which is influenced by diabetes and chronic kidney disease. Nutritional support for chronic disease patients and sarcopenic individuals with adequate energy and protein intake, vitamin D supplementation, blood glucose level management for individuals with diabetes, obesity prevention, nutritional education for healthy individuals, and the enlightenment of society could be crucial to solve the health-related problems in super-aging societies.
The Mutual Interplay between Bone, Glucose and Lipid Metabolism: The Role of Vitamin D and PTH
Authors: Danese Vittoria , Pepe Jessica , Ferrone Federica , Colangelo Luciano , De Martino Viviana , Nieddu Luciano , Ferrazza Giancarlo , Panzini Enrico , Pascone Roberto , Blocki Frank , Minisola Salvatore , Cipriani Cristiana
Published: July 2023

Background. We sought to investigate the mutual interplay between bone, glucose and lipid metabolism in a wide cohort of community-based subjects. Methods. We studied 1240 blood donors (F/M ratio 1/3.2, mean age 41.9 ± 11.7 SD). Serum ionized (Ca++), magnesium (Mg++), 25-hydroxy-vitamin D [25(OH)D], PTH-1-84, 1,25-dihydroxyvitamin D [1,25(OH)2D], total cholesterol (C), HDL-C, triglycerides and glucose were measured and LDL-C levels were calculated in all subjects. Results. 25(OH)D negatively correlated with BMI (R = −0.11), PTH (R = −0.16) (p < 0.0001), total C (R = −0.06, p < 0.05) and triglycerides (R = −0.13, p < 0.0001) and positively with 1,25(OH)2D (R = 0.12) and creatinine (R = 0.17) (p < 0.0001). Serum PTH positively correlated with total C (R = 0.08, p < 0.01), LDL-C (R = 0.1, p < 0.001), triglycerides (R = 0.09, p < 0.01) and glucose (R = 0.15, p < 0.0001) and negatively with HDL-C (R = −0.09, p < 0.01). The odds of showing abnormal serum triglycerides and HDL-C increased as 25(OH)D decreased (p < 0.0001 and p < 0.03) and PTH increased (p < 0.03 and p = 0.05), while the odds of showing abnormal LDL-C levels increased in association with elevated PTH (p < 0.01). Conclusion. Vitamin D, PTH, glucose and lipid metabolism are mutually influenced. Hypovitaminosis D predisposes toward worsening lipid profiles through the actions of PTH, while serum PTH levels per se associate with higher glucose and LDL-C levels.
Awareness and Use of Low-Sodium Salt Substitutes and Its Impact on 24-h Urinary Sodium and Potassium Excretion in China—A Cross-Sectional Study
Authors: Zhang Puhong , Fan Fang , Li Yinghua , Li Yuan , Luo Rong , Li Li , Zhang Gang , Wang Lanlan , Jiao Xiaofei , He Feng J.
Published: July 2023

The use of low-sodium salt substitute (LSSS) has the potential to reduce sodium and increase potassium intake. LSSS has been available in the Chinese market for years. However, its real-world use and impact on sodium/potassium intake is unclear. Baseline data of 4000 adult individuals who participated in three similarly designed randomized controlled trials were pooled together for this analysis. Self-reported awareness and use of LSSS were collected using a standardized questionnaire, and the participants’ 24-h urinary sodium and potassium excretion was used to estimate their dietary intake. Mixed-effects models were developed to assess the relationship between LSSS and 24-h urinary sodium and potassium excretion. 32.0% of the participants reported awareness of LSSS and 11.7% reported its current use. After adjusting for location, sex, age, and education, compared with the group of participants unaware of LSSS, participants who were aware of but not using LSSS and those who were using LSSS had a lower 24-h urinary sodium excretion by −356.1 (95% CI: −503.9, −205.9) mg/d and −490.6 (95% CI: −679.2, −293.7) mg/d, respectively (p < 0.001). No significant difference was found for 24-h urinary potassium excretion or sodium-to-potassium ratio among the three groups (p > 0.05). In conclusion, the findings of low usage of LSSS and the reduced urinary sodium excretion associated with the awareness and use of LSSS provide further support for the prometon of LSSS as a key salt reduction strategy in China.
Occurrence of the Parasite Myosaccium ecaude in Thread Herrings from the Gulf of Tehuantepec, Mexico
Authors: Morales-Serna Francisco Neptalí , López-Moreno Dania G. , Osuna-Cabanillas Juan M. , García-Labrador Saúl , Vallarta-Zárate J. Roberto F. , Payan-Alejo Jorge , Amezcua Felipe
Published: July 2023

Thread herrings (Opisthonema spp.) are economically important fish species in the Tropical Eastern Pacific. Knowledge of the parasitofauna of commercially exploited species is useful as it can increase our understanding of fish biology and ecology. However, our knowledge of the parasites of Opisthonema spp. is limited. During a fisheries exploration survey in April 2022, samples of Opisthonema bulleri and O. libertate were collected from three oceanographic stations in the Gulf of Tehuantepec in the Mexican Pacific. Parasitological analysis of these materials uncovered four parasite species: Myosaccium ecaude (Trematoda), Cribromazocraes sp. (Monogenea), Pseudoterranova sp. (Nematoda), and an unidentified crustacean of the family Pennellidae (Copepoda). All these species appeared rarely, except for M. ecaude, which reached a prevalence of 100%. The median intensity of M. ecaude infection was significantly higher in O. bulleri than in O. libertate. We analyzed the relationship between parasitic infection intensity and three host traits (fork length, body weight, and age). Only body weight showed a significant positive association with intensity. Future studies are required to analyze the possible effects of seasonality, locality, and host ontogeny on the occurrence of M. ecaude in thread herrings in the Tropical Eastern Pacific.
Insights into the Intersection of Biocide Resistance, Efflux Pumps, and Sequence Types in Carbapenem-Resistant Acinetobacter baumannii: A Multicenter Study
Authors: Taj Zeeshan , Rasool Muhammad Hidayat , Khurshid Mohsin , Aslam Bilal , Qamar Muhammad Usman
Published: July 2023

Acinetobacter baumannii, a pathogenic bacterium acquired in hospitals, causes diverse infections in humans. Previous studies have reported resistance among A. baumannii strains, potentially selecting multi-drug-resistant variants. In Pakistan, research has primarily focused on carbapenem-resistant A. baumannii (CRAB) strains, overlooking the investigation of efflux pumps (EPs) and biocide resistance. This study aims to assess A. baumannii strains from five hospitals in Pakistan, focusing on antibiotic and biocide susceptibility, the impact of EP inhibitors on antimicrobial susceptibility, and the distribution of ARGs and STs. A total of 130 non-repeated Acinetobacter baumannii isolates were collected from five tertiary care hospitals in Pakistan and identified using API 20NE and multiplex PCR. Antimicrobial susceptibility testing utilized disc diffusion and broth microdilution assays, while biocide susceptibility was assessed with various agents. The impact of an efflux pump inhibitor (NMP) on antibiotic susceptibility was evaluated. PCR screening for ARGs and EPGs was followed by DNA sequencing validation. MLST was performed using the Pasteur scheme. Most isolates demonstrated resistance to tested antibiotics, with varying levels of susceptibility to biocides. All isolates exhibited the intrinsic class D β-lactamase blaOXA-51, while acquired blaOXA-23 was present in all CRAB isolates. Among EPs, adeJ, abeD, amvA, and aceI were prevalent in almost all isolates, with adeB found in 93% of isolates and adeG, adeT1, adeT2, and qacEΔ1 displaying lower prevalence ranging from 65% to 79%. The most common STs were ST589 and ST2, accounting for 28.46% and 25.38% of isolates, respectively, followed by ST642 at 12.6%. These findings indicate that A. baumannii strains in Pakistan are resistant to antibiotics (excluding colistin and tigecycline) and may be developing biocide resistance, which could contribute to the selection and dissemination of multi-drug-resistant strains.
Cultivation of Asexual Intraerythrocytic Stages of Plasmodium falciparum
Authors: Basco Leonardo K.
Published: July 2023

Successfully developed in 1976, the continuous in vitro culture of Plasmodium falciparum has many applications in the field of malaria research. It has become an important experimental model that directly uses a human pathogen responsible for a high prevalence of morbidity and mortality in many parts of the world and is a major source of biological material for immunological, biochemical, molecular, and pharmacological studies. Until present, the basic techniques described by Trager and Jensen and Haynes et al. remain unchanged in many malaria research laboratories. Nonetheless, different factors, including culture media, buffers, serum substitutes and supplements, sources of erythrocytes, and conditions of incubation (especially oxygen concentration), have been modified by different investigators to adapt the original technique in their laboratories or enhance the in vitro growth of the parasites. The possible effects and benefits of these modifications for the continuous cultivation of asexual intraerythrocytic stages of P. falciparum, as well as future challenges in developing a serum-free cultivation system and axenic cultures, are discussed.
Severe and Atypical Presentation of Takotsubo Cardiomyopathy in a Pediatric Patient after a Serious Crash Injury—Case Report and Literature Review
Authors: Tsitsipanis Christos , Miliaraki Marianna , Michailou Maria , Geromarkaki Elisavet , Spanaki Anna-Maria , Nyktari Vasilia , Yannopoulos Andreas , Moustakis Nikolaos , Ilia Stavroula
Published: July 2023

Takotsubo cardiomyopathy is an uncommon clinical entity in children, resulting in severe but sometimes reversible systolic dysfunction of the left ventricle. This condition is triggered by multiple emotional or physical stressors, while neurogenic stress cardiomyopathy after brain injuries has become increasingly recognized in children over the past few years. We report the case of an 11-year-old child with an atypical clinical presentation after a serious car crash accident. An initial computed tomography scan revealed an acute epidural hematoma, which was immediately treated by an emergency craniotomy. During the patient’s following pediatric intensive care unit hospitalization, severe hemodynamic instability was observed, leading to gradually higher doses of vasopressors for circulatory support. On echocardiography, the patient had signs of severe cardiac contractility compromise, with characteristic pattern of regional wall motion abnormalities of the left ventricle, which, in combination with seriously elevated cardiac enzymes, electrocardiographic (ECG) abnormalities and continuous thermodilution hemodynamic monitoring (PICCO) findings, led to intensification of inotropic support and to the diagnosis of takotsubo cardiomyopathy. Despite supportive measures, the patient developed multiorgan failure and succumbed to their serious illness. For this atypical case, extracorporeal membrane oxygenation (ECMO) was addressed as an option for the seriously failing heart, but due to the extremely high risk of intracranial bleeding, it could not be used for this patient’s treatment. In conclusion, Takotsubo cardiomyopathy should be suspected in pediatric cases of cardiac dysfunction after serious injuries or stress conditions.
Assessment of Different Niosome Formulations for Optogenetic Applications: Morphological and Electrophysiological Effects
Authors: Celdrán José David , Humphreys Lawrence , González Desirée , Soto-Sánchez Cristina , Martínez-Navarrete Gema , Maldonado Iván , Gallego Idoia , Villate-Beitia Ilia , Sainz-Ramos Myriam , Puras Gustavo , Pedraz José Luis , Fernández Eduardo
Published: July 2023

Gene therapy and optogenetics are becoming promising tools for treating several nervous system pathologies. Currently, most of these approaches use viral vectors to transport the genetic material inside the cells, but viruses present some potential risks, such as marked immunogenicity, insertional mutagenesis, and limited insert gene size. In this framework, non-viral nanoparticles, such as niosomes, are emerging as possible alternative tools to deliver genetic material, avoiding the aforementioned problems. To determine their suitability as vectors for optogenetic therapies in this work, we tested three different niosome formulations combined with three optogenetic plasmids in rat cortical neurons in vitro. All niosomes tested successfully expressed optogenetic channels, which were dependent on the ratio of niosome to plasmid, with higher concentrations yielding higher expression rates. However, we found changes in the dendritic morphology and electrophysiological properties of transfected cells, especially when we used higher concentrations of niosomes. Our results highlight the potential use of niosomes for optogenetic applications and suggest that special care must be taken to achieve an optimal balance of niosomes and nucleic acids to achieve the therapeutic effects envisioned by these technologies.
Emerging Polymer-Based Nanosystem Strategies in the Delivery of Antifungal Drugs
Authors: Xin Yuan , Quan Liang , Zhang Hengtong , Ao Qiang
Published: July 2023

Nanosystems-based antifungal agents have emerged as an effective strategy to address issues related to drug resistance, drug release, and toxicity. Among the diverse materials employed for antifungal drug delivery, polymers, including polysaccharides, proteins, and polyesters, have gained significant attention due to their versatility. Considering the complex nature of fungal infections and their varying sites, it is crucial for researchers to carefully select appropriate polymers based on specific scenarios when designing antifungal agent delivery nanosystems. This review provides an overview of the various types of nanoparticles used in antifungal drug delivery systems, with a particular emphasis on the types of polymers used. The review focuses on the application of drug delivery systems and the release behavior of these systems. Furthermore, the review summarizes the critical physical properties and relevant information utilized in antifungal polymer nanomedicine delivery systems and briefly discusses the application prospects of these systems.
Student Perceptions of Substance Use Disorder Stigma as a Factor for Health Disparities: A Mixed-Methods Study
Authors: Barenie Rachel E. , Cernasev Alina , Hohmeier Kenneth C. , Heidel R. Eric , Knight Phillip , Forrest-Bank Shandra
Published: July 2023

Background: The prevalence of substance use disorders (SUDs) is an alarming problem in the United States; however, only a fraction of patients receive treatment. Stigma from both healthcare professionals and society at large negatively impacts SUD treatment. There are limited data regarding the perceptions of healthcare students on SUD stigma as a health disparity. Methods: We conducted a concurrent mixed-methods study among students enrolled in six health-related colleges at one mid-south health science center in the US over 3 months. Both an electronic survey consisting of 17 close-ended questions and researcher-led focus groups were conducted to understand their perceptions of stigma and SUDs. The research team followed the six steps recommended by Braun and Clarke regarding the data that aimed to capture associations between categories and extract and conceptualize the themes, and thematic analysis was done using Dedoose® (Manhattan Beach, CA, USA) qualitative software, which facilitated all the codes being kept organized and compared the frequency of codes across categories. Results: A total of n = 428 students participated in the survey (response rate = 13%), and n = 31 students took part in five focus groups. Most student respondents, on average, either agreed or strongly agreed that: stigma currently exists in the healthcare field; stigma can lead to patients’ not receiving the appropriate care for an SUD; and stigma can lead to lower quality care provided to patients with SUDs. Two themes were identified based on the thematic analysis: (1) additional training is necessary to better equip students for addressing SUDs in practice and (2) suggestions were formed to develop synergy between didactic and clinical rotations to improve SUD training. Conclusions: It is evident that students perceive the stigma surrounding SUDs as a detriment to patient care. Opportunities may exist in professional training programs to more seamlessly and intentionally weave SUD treatment and management concepts throughout the curriculum, as well as to empower students to operate in the complex regulatory scheme that exists for SUDs in the US.
An Ultrabroadband and Cost-Effective Edge Coupler for Efficient Thin Film Lithium Niobate Photonics
Authors: Chen Houhong , Ma Fei , Chen Ke , Dong Jianwen
Published: July 2023

Due to attractive material properties, thin film lithium niobate (TFLN) has emerged as a promising platform for advanced photonic functions such as high-speed electro-optical modulation, nonlinear frequency conversion, and frequency comb generation. The inevitable problems for the practical above-mentioned applications are the large coupling loss between the fiber and the TFLN waveguide and difficulty in achieving broadband coupling, especially covering the near-visible to near-infrared. Here, we theoretically propose a low-loss and ultrabroadband edge coupler with a six-layer structure. For transverse electric (TE) polarized light, the proposed coupler can achieve 0.62 dB, 0.38 dB, and 0.47 dB per facet at three common communication bands, 845 nm, 1310 nm, and 1550 nm, respectively. From 1200 nm to 2000 nm, the coupling loss is less than 1 dB/facet. Moreover, in the near-visible to near-infrared region ranging from 845 nm to 2000 nm, the coupling loss is lower than 2 dB/facet. The proposed coupler can avoid expensive electron beam lithography. Instead, it can be fabricated by i-line ultraviolet lithography, which is cost-effective and adaptable to wafer-scale fabrication. Also, simulated fabrication tolerances demonstrate the strong robustness of the proposed coupler. Our results pave a way towards practical TFLN photonic devices connected with optical fibers.
Ultrafast Charge Dynamics in Bulk Zinc Oxide under Intense Photoexcitation
Authors: Rubano Andrea , Paparo Domenico
Published: July 2023

The photo-induced charge dynamics of textbook wide-bandgap semiconductor ZnO have been investigated on the picosecond time-scale. We performed optical Pump-THz Probe experiments in order to measure the dielectric constant of the material after high-fluence photo-excitation of charge carriers. The technique allows access to both carrier lifetime and scattering rates, and it provides direct access to the intrinsic dielectric function changes upon excitation. A complex dynamic is unveiled in the high-fluence pumping regime, where the relaxation time is in the hundreds of picoseconds range and increases with increasing Pump fluence, while the onset of photoconductivity takes place in a few picoseconds. The plasma frequency and the relaxation time dependence on the Pump fluence are discussed.
A Deep Echo State Network-Based Novel Signal Processing Approach for Underwater Wireless Optical Communication System with PAM and OFDM Signals
Authors: Wang Kexin , Gao Yihong , Dragone Mauro , Petillot Yvan , Wang Xu
Published: July 2023

Underwater wireless optical communication (UWOC) plays key role in the underwater wireless sensor networks (UWSNs), which have been widely employed for both scientific and commercial applications. UWOC offers high transmission data rates, high security, and low latency communication between nodes in UWSNs. However, significant absorption and scattering loss in underwater channels, due to ocean water conditions, can introduce highly non-linear distortion in the received signals, which can severely deteriorate communication quality. Consequently, addressing the challenge of processing UWOC signals with low optical signal-to-noise ratios (OSNRs) is critical for UWOC systems. Increasing the transmitting optical power and investigating more advanced signal processing technologies to recover transmitted symbols are two primary approaches to improve system tolerance in noisy UWOC signal channels. In this paper, we propose and demonstrate the application of deep echo state networks (DeepESNs) for channel equalization in high-speed UWOC systems to enhance system performance with both PAM and QPSK-OFDM modulations. Our experimental results demonstrate the effectiveness of DeepESNs in UWOC systems, achieving error-free underwater transmission over 40.5 m with data rates up to 167 Mbps. Moreover, we compare the performance of DeepESNs to conventional echo state networks and provide suggestions on the configuration of a DeepESN for UWOC signals.
Non−Invasive Assessment, Classification, and Prediction of Biophysical Parameters Using Reflectance Hyperspectroscopy
Authors: Falcioni Renan , Santos Glaucio Leboso Alemparte Abrantes dos , Crusiol Luis Guilherme Teixeira , Antunes Werner Camargos , Chicati Marcelo Luiz , Oliveira Roney Berti de , Demattê José A. M. , Nanni Marcos Rafael
Published: July 2023

Hyperspectral technology offers significant potential for non-invasive monitoring and prediction of morphological parameters in plants. In this study, UV−VIS−NIR−SWIR reflectance hyperspectral data were collected from Nicotiana tabacum L. plants using a spectroradiometer. These plants were grown under different light and gibberellic acid (GA3) concentrations. Through spectroscopy and multivariate analyses, key growth parameters, such as height, leaf area, energy yield, and biomass, were effectively evaluated based on the interaction of light with leaf structures. The shortwave infrared (SWIR) bands, specifically SWIR1 and SWIR2, showed the strongest correlations with these growth parameters. When classifying tobacco plants grown under different GA3 concentrations in greenhouses, artificial intelligence (AI) and machine learning (ML) algorithms were employed, achieving an average accuracy of over 99.1% using neural network (NN) and gradient boosting (GB) algorithms. Among the 34 tested vegetation indices, the photochemical reflectance index (PRI) demonstrated the strongest correlations with all evaluated plant phenotypes. Partial least squares regression (PLSR) models effectively predicted morphological attributes, with R2CV values ranging from 0.81 to 0.87 and RPDP values exceeding 2.09 for all parameters. Based on Pearson’s coefficient XYZ interpolations and HVI algorithms, the NIR−SWIR band combination proved the most effective for predicting height and leaf area, while VIS−NIR was optimal for optimal energy yield, and VIS−VIS was best for predicting biomass. To further corroborate these findings, the SWIR bands for certain morphological characteristic wavelengths selected with s−PLS were most significant for SWIR1 and SWIR2, while i−PLS showed a more uniform distribution in VIS−NIR−SWIR bands. Therefore, SWIR hyperspectral bands provide valuable insights into developing alternative bands for remote sensing measurements to estimate plant morphological parameters. These findings underscore the potential of remote sensing technology for rapid, accurate, and non-invasive monitoring within stationary high-throughput phenotyping systems in greenhouses. These insights align with advancements in digital and precision technology, indicating a promising future for research and innovation in this field.
Changes in the Amount and Distribution of Soil Nutrients and Neighbours Have Differential Impacts on Root and Shoot Architecture in Wheat (Triticum aestivum)
Authors: Mahal Habba F. , Barber-Cross Tianna , Brown Charlotte , Spaner Dean , Cahill James F.
Published: July 2023

Plants exhibit differential behaviours through changes in biomass development and distribution in response to environmental cues, which may impact crops uniquely. We conducted a mesocosm experiment in pots to determine the root and shoot behavioural responses of wheat, T. aestivum. Plants were grown in homogeneous or heterogeneous and heavily or lightly fertilized soil, and alone or with a neighbour of the same or different genetic identity (cultivars: CDC Titanium, Carberry, Glenn, Go Early, and Lillian). Contrary to predictions, wheat did not alter relative reproductive effort in the presence of neighbours, more nutrients, or homogenous soil. Above and below ground, the plants’ tendency to use potentially shared space exhibited high levels of plasticity. Above ground, they generally avoided shared, central aerial space when grown with neighbours. Unexpectedly, nutrient amount and distribution also impacted shoots; plants that grew in fertile or homogenous environments increased shared space use. Below ground, plants grown with related neighbours indicated no difference in neighbour avoidance. Those in homogenous soil produced relatively even roots, and plants in heterogeneous treatments produced more roots in nutrient patches. Additionally, less fertile soil resulted in pot-level decreases in root foraging precision. Our findings illustrate that explicit coordination between above- and belowground biomass in wheat may not exist.