bluuebunny/crossref_metadata_2025 huggingface dataset:
Molecular chaperone genes in the sugarcane expressed sequence database (SUCEST)
Authors: Borges Júlio C. , Peroto Maria C. , Ramos Carlos H.I.
Published: April 2005

Some newly synthesized proteins require the assistance of molecular chaperones for their correct folding. Chaperones are also involved in the dissolution of protein aggregates making their study significant for both biotechnology and medicine and the identification of chaperones and stress-related protein sequences in different organisms is an important task. We used bioinformatic tools to investigate the information generated by the Sugarcane Expressed Sequence Tag (SUCEST) genome project in order to identify and annotate molecular chaperones. We considered that the SUCEST sequences belonged to this category of proteins when their E-values were lower than 1.0e-05. Our annotation shows that 4,164 of the 5’ expressed sequence tag (EST) sequences were homologous to molecular chaperones, nearly 1.8% of all the 5’ ESTs sequenced during the SUCEST project. About 43% of the chaperones which we found were Hsp70 chaperones and its co-chaperones, 10% were Hsp90 chaperones and 13% were peptidyl-prolyl cis, trans isomerase. Based on the annotation results we predicted 156 different chaperone gene subclasses in the sugarcane genome. Taken together, our results indicate that genes which encode chaperones were diverse and abundantly expressed in sugarcane cells, which emphasizes their biological importance.
Base excision repair in sugarcane
Authors: Agnez-Lima Lucymara F. , Medeiros Sílvia R. Batistuzzo de , Maggi Bruno S. , Quaresma Giovanna A.S.
Published: April 2005

DNA damage can be induced by a large number of physical and chemical agents from the environment as well as compounds produced by cellular metabolism. This type of damage can interfere with cellular processes such as replication and transcription, resulting in cell death and/or mutations. The low frequency of mutagenesis in cells is due to the presence of enzymatic pathways which repair damaged DNA. Several DNA repair genes (mainly from bacteria, yeasts and mammals) have been cloned and their products characterized. The high conservation, especially in eukaryotes, of the majority of genes related to DNA repair argues for their importance in the maintenance of life on earth. In plants, our understanding of DNA repair pathways is still very poor, the first plant repair genes having only been cloned in 1997 and the mechanisms of their products have not yet been characterized. The objective of our data mining work was to identify genes related to the base excision repair (BER) pathway, which are present in the database of the Sugarcane Expressed Sequence Tag (SUCEST) Project. This search was performed by tblastn program. We identified sugarcane clusters homologous to the majority of BER proteins used in the analysis and a high degree of conservation was observed. The best results were obtained with BER proteins from Arabidopsis thaliana. For some sugarcane BER genes, the presence of more than one form of mRNA is possible, as shown by the occurrence of more than one homologous EST cluster.
Distribution of DNA repair-related ESTs in sugarcane
Authors: Lima W.C. , Medina-Silva R. , Galhardo R.S. , Menck C.F.M.
Published: April 2005

DNA repair pathways are necessary to maintain the proper genomic stability and ensure the survival of the organism, protecting it against the damaging effects of endogenous and exogenous agents. In this work, we made an analysis of the expression patterns of DNA repair-related genes in sugarcane, by determining the EST (expressed sequence tags) distribution in the different cDNA libraries of the SUCEST transcriptome project. Three different pathways - photoreactivation, base excision repair and nucleotide excision repair - were investigated by employing known DNA repair proteins as probes to identify homologous ESTs in sugarcane, by means of computer similarity search. The results showed that DNA repair genes may have differential expressions in tissues, depending on the pathway studied. These in silico data provide important clues on the potential variation of gene expression, to be confirmed by direct biochemical analysis.
Sequence polymorphism from EST data in sugarcane: a fine analysis of 6-phosphogluconate dehydrogenase genes
Authors: Grivet L. , Glaszmann J.C. , Arruda P.
Published: April 2005

This paper presents preliminary results demonstrating the use of the sugarcane expressed sequence tag (EST) database (SUCEST) to detect single nucleotide polymorphisms (SNPs) inside 6-phosphogluconate dehydrogenase genes (Pgds). Sixty-four Pgd-related EST sequences were identified and partitioned into two clear-cut sets of 14 and 50 ESTs, probably corresponding to two genes, A and B, respectively. Alignment of A sequences allowed the detection of a single SNP while alignment of B sequences permitted the detection of 39 reliable SNPs, 27 of which in the coding sequence of the gene. Thirty-eight SNPs were binucleotidic and a single one was trinucleotidic. Nine insertions/deletions from one to 72 base pairs long were also detected in the noncoding 3’ and 5’ sequences. The soundness and the consequences of those preliminary observations on sequence polymorphism in sugarcane are discussed.
Sugarcane genes related to mitochondrial function
Authors: Fonseca Ghislaine V. , Tambor José Humberto M. , Nobrega Marina P. , Santos Rafael , Nobrega Francisco G.
Published: April 2005

Mitochondria function as metabolic powerhouses by generating energy through oxidative phosphorylation and have become the focus of renewed interest due to progress in understanding the subtleties of their biogenesis and the discovery of the important roles which these organelles play in senescence, cell death and the assembly of iron-sulfur (Fe/S) centers. Using proteins from the yeast Saccharomyces cerevisiae, Homo sapiens and Arabidopsis thaliana we searched the sugarcane expressed sequence tag (SUCEST) database for the presence of expressed sequence tags (ESTs) with similarity to nuclear genes related to mitochondrial functions. Starting with 869 protein sequences, we searched for sugarcane EST counterparts to these proteins using the basic local alignment search tool TBLASTN similarity searching program run against 260,781 sugarcane ESTs contained in 81,223 clusters. We were able to recover 367 clusters likely to represent sugarcane orthologues of the corresponding genes from S. cerevisiae, H. sapiens and A. thaliana with E-value <= 10-10. Gene products belonging to all functional categories related to mitochondrial functions were found and this allowed us to produce an overview of the nuclear genes required for sugarcane mitochondrial biogenesis and function as well as providing a starting point for detailed analysis of sugarcane gene structure and physiology.
Patterns of expression of cell wall related genes in sugarcane
Authors: Lima D.U. , Santos H.P. , Tiné M.A. , Molle F.R.D. , Buckeridge M.S.
Published: April 2005

Our search for genes related to cell wall metabolism in the sugarcane expressed sequence tag (SUCEST) database (http://sucest.lbi.dcc.unicamp.br) resulted in 3,283 reads (1% of the total reads) which were grouped into 459 clusters (potential genes) with an average of 7.1 reads per cluster. To more clearly display our correlation coefficients, we constructed surface maps which we used to investigate the relationship between cell wall genes and the sugarcane tissues libraries from which they came. The only significant correlations that we found between cell wall genes and/or their expression within particular libraries were neutral or synergetic. Genes related to cellulose biosynthesis were from the CesA family, and were found to be the most abundant cell wall related genes in the SUCEST database. We found that the highest number of CesA reads came from the root and stem libraries. The genes with the greatest number of reads were those involved in cell wall hydrolases (e.g. beta-1,3-glucanases, xyloglucan endo-beta-transglycosylase, beta-glucosidase and endo-beta-mannanase). Correlation analyses by surface mapping revealed that the expression of genes related to biosynthesis seems to be associated with the hydrolysis of hemicelluloses, pectin hydrolases being mainly associated with xyloglucan hydrolases. The patterns of cell wall related gene expression in sugarcane based on the number of reads per cluster reflected quite well the expected physiological characteristics of the tissues. This is the first work to provide a general view on plant cell wall metabolism through the expression of related genes in almost all the tissues of a plant at the same time. For example, developing flowers behaved similarly to both meristematic tissues and leaf-root transition zone tissues. Besides providing a basis for future research on the mechanisms of plant development which involve the cell wall, our findings will provide valuable tools for plant engineering in the near future.
Expression of sugarcane genes induced by inoculation with Gluconacetobacter diazotrophicus and Herbaspirillum rubrisubalbicans
Authors: Nogueira Eduardo de Matos , Vinagre Fabiano , Masuda Hana Paula , Vargas Claudia , Pádua Vânia Lúcia Muniz de , Silva Felipe Rodrigues da , Santos Renato V. dos , Baldani José Ivo , Ferreira Paulo Cavalcanti Gomes , Hemerly Adriana Silva
Published: April 2005

Several Brazilian sugarcane varieties have the ability to grow with little addition of inorganic nitrogen fertilizers, showing high contributions of Biological Nitrogen Fixation (BNF). A particular type of nitrogen-fixing association has been described in this crop, where endophytic diazotrophs such as Gluconacetobacter diazotrophicus and Herbaspirillum spp. colonize plant tissues without causing disease symptoms. In order to gain insight into the role played by the sugarcane in the interaction between this plant and endophytic diazotrophs, we investigated gene expression profiles of sugarcane plants colonized by G. diazotrophicus and H. rubrisubalbicans by searching the sugarcane expressed sequence tag SUCEST Database (http://sucest.lad.ic.unicamp.br/en/). We produced an inventory of sugarcane genes, candidates for exclusive or preferential expression during the nitrogen-fixing association. This data suggests that the host plant might be actively involved in the establishment of the interaction with G. diazotrophicus and H. rubrisubalbicans.
Identifying sugarcane expressed sequences associated with nutrient transporters and peptide metal chelators
Authors: Figueira Antonio , Kido Ederson Akio , Almeida Raul Santin
Published: April 2005

Plant nutrient uptake is an active process, requiring energy to accumulate essential elements at higher levels in plant tissues than in the soil solution, while the presence of toxic metals or excess of nutrients requires mechanisms to modulate the accumulation of ions. Genes encoding ion transporters isolated from plants and yeast were used to identify sugarcane putative homologues in the sugarcane expressed sequence tag (SUCEST) database. Five cluster consensi with sequence homology to plant high-affinity phosphate transporter genes were identified. One cluster consensus allowed the prediction of a full-length protein containing 541 amino acids, with 81% amino acid identity to the Nicotiana tabacum NtPT1 gene, consisting of 12 membrane-spanning domains divided by a large hydrophilic charged region. Putative homologues to Arabidopsis thaliana micronutrient transporter genes were also detected in some of the SUCEST libraries. Iron uptake in grasses involves the release of the phytosiderophore mugeneic acid (MA) which chelate Fe3+ which is then absorbed by a specific transporter. Sugarcane expressed sequence tag (EST) homologous to genes coding for three enzymes of the mugeneic acid biosynthetic pathway [nicotianamine synthase; nicotianamine transferase; and putative mugeneic acid synthetase (ids3)] and a putative Fe3+-phytosiderophore transporter were detected. Seven sugarcane sequence clusters were identified with strong homology to members of the ZIP gene family (ZIP1, ZIP3, ZIP4, IRT1 and ZNT1), while four clusters homologous to ZIP2 and three to ZAT were found. Homologues to members of another gene family, Nramp, which code for broad-specificity transition metal transporters were also detected with constitutive expression. Partial transcripts homologous to genes encoding gamma-glutamylcysteine synthetase, glutathione synthetase, and phytochelatin synthase (responsible for biosynthesis of the metal chelator phytochelatin) and all four types of the major plant metal-chelator peptide metallothionein (MT) were identified: Type I MT being the most abundant (>1% of seed-library reads), followed by Type II which had a similar pattern of expression as that described for Arabidopsis MT. Identifying and understanding the expression of genes associated with nutrient uptake and metal tolerance could lead to the development of more nutrient-efficient sugarcane cultivars, or might allow the use of sugarcane as a hyper-accumulator plant for the restoration of contaminated areas in phytoremediation programs.
Prospecting sugarcane genes involved in aluminum tolerance
Authors: Drummond Rodrigo D. , Guimarães Claudia T. , Felix Juliana , Ninamango-Cárdenas Fernando E. , Carneiro Newton P. , Paiva Edilson , Menossi Marcelo
Published: April 2005

Aluminum is one of the major factors that affect plant development in acid soils, causing a substantial reduction in yield in many crops. In South America, about 66% of the land surface is made up of acid soils where high aluminum saturation is one of the main limiting factors for agriculture. The biochemical and molecular basis of aluminum tolerance in plants is far from being completely understood despite a growing number of studies, and in the specific case of sugarcane there are virtually no reports on the effects of gene regulation on aluminum stress. The objective of the work presented in this paper was to prospect the sugarcane expressed sequence tag (SUCEST) data bank for sugarcane genes related to several biochemical pathways known to be involved in the responses to aluminum toxicity in other plant species and yeast. Sugarcane genes similar to most of these genes were found, including those coding for enzymes that alleviate oxidative stress or combat infection by pathogens and those which code for proteins responsible for the release of organic acids and signal transducers. The role of these genes in aluminum tolerance mechanisms is reviewed. Due to the high level of genomic conservation in related grasses such as maize, barley, sorghum and sugarcane, these genes may be valuable tools which will help us to better understand and to manipulate aluminum tolerance in these species.
Sugarcane expressed sequences tags (ESTs) encoding enzymes involved in lignin biosynthesis pathways
Authors: Ramos Rose Lucia Braz , Tovar Francisco Javier , Junqueira Ricardo Magrani , Lino Fabiane Borges , Sachetto-Martins Gilberto
Published: April 2005

Lignins are phenolic polymers found in the secondary wall of plant conductive systems where they play an important role by reducing the permeability of the cell wall to water. Lignins are also responsible for the rigidity of the cell wall and are involved in mechanisms of resistance to pathogens. The metabolic routes and enzymes involved in synthesis of lignins have been largely characterized and representative genes that encode enzymes involved in these processes have been cloned from several plant species. The synthesis of lignins is liked to the general metabolism of the phenylpropanoids in plants, having enzymes (e.g. phenylalanine ammonia-lyase (PAL), cinnamate 4-hydroxylase (C4H) and caffeic acid O-methyltransferase (COMT)) common to other processes as well as specific enzymes such as cinnamoyl-CoA reductase (CCR) and cinnamyl alcohol dehydrogenase (CAD). Some maize and sorghum mutants, shown to have defective in CAD and/or COMT activity, are easier to digest because they have a reduced lignin content, something which has motivated different research groups to alter the lignin content and composition of model plants by genetic engineering try to improve, for example, the efficiency of paper pulping and digestibility. In the work reported in this paper, we have made an inventory of the sugarcane expressed sequence tag (EST) coding for enzymes involved in lignin metabolism which are present in the sugarcane EST genome project (SUCEST) database. Our analysis focused on the key enzymes ferulate-5-hydroxylase (F5H), caffeic acid O-methyltransferase (COMT), caffeoyl CoA O-methyltransferase (CCoAOMT), hydroxycinnamate CoA ligase (4CL), cinnamoyl-CoA reductase (CCR) and cinnamyl alcohol dehydrogenase (CAD). The comparative analysis of these genes with those described in other species could be used as molecular markers for breeding as well as for the manipulation of lignin metabolism in sugarcane.
Biosynthesis of secondary metabolites in sugarcane
Authors: França S.C. , Roberto P.G. , Marins M.A. , Puga R.D. , Rodrigues A. , Pereira J.O.
Published: April 2005

A set of genes related to secondary metabolism was extracted from the sugarcane expressed sequence tag (SUCEST) database and was used to investigate both the gene expression pattern of key enzymes regulating the main biosynthetic secondary metabolism pathways and the major classes of metabolites involved in the response of sugarcane to environmental and developmental cues. The SUCEST database was constructed with tissues in different physiological conditions which had been collected under varied situation of environmental stress. This database allows researchers to identify and characterize the expressed genes of a wide range of putative enzymes able to catalyze steps in the phenylpropanoid, isoprenoid and other pathways of the special metabolic mechanisms involved in the response of sugarcane to environmental changes. Our results show that sugarcane cDNAs encoded putative ultra-violet induced sesquiterpene cyclases (SC); chalcone synthase (CHS), the first enzyme in the pathway branch for flavonoid biosynthesis; isoflavone synthase (IFS), involved in plant defense and root nodulation; isoflavone reductase (IFR), a key enzyme in phenylpropanoid phytoalexin biosynthesis; and caffeic acid-O-methyltransferase, a key enzyme in the biosynthesis of lignin cell wall precursors. High levels of CHS transcripts from plantlets infected with Herbaspirillum rubri or Gluconacetobacter diazotroficans suggests that agents of biotic stress can elicit flavonoid biosynthesis in sugarcane. From this data we have predicted the profile of isoprenoid and phenylpropanoid metabolism in sugarcane and pointed the branches of secondary metabolism activated during tissue-specific stages of development and the adaptive response of sugarcane to agents of biotic and abiotic stress, although our assignment of enzyme function should be confirmed by careful biochemical and genetic supporting evidence.
Identification of sugarcane genes involved in the purine synthesis pathway
Authors: Jancso Mario A. , Sculaccio Susana A. , Thiemann Otavio H.
Published: April 2005

Nucleotide synthesis is of central importance to all cells. In most organisms, the purine nucleotides are synthesized de novo from non-nucleotide precursors such as amino acids, ammonia and carbon dioxide. An understanding of the enzymes involved in sugarcane purine synthesis opens the possibility of using these enzymes as targets for chemicals which may be effective in combating phytopathogen. Such an approach has already been applied to several parasites and types of cancer. The strategy described in this paper was applied to identify sugarcane clusters for each step of the de novo purine synthesis pathway. Representative sequences of this pathway were chosen from the National Center for Biotechnology Information (NCBI) database and used to search the translated sugarcane expressed sequence tag (SUCEST) database using the available basic local alignment search tool (BLAST) facility. Retrieved clusters were further tested for the statistical significance of the alignment by an implementation (PRSS3) of the Monte Carlo shuffling algorithm calibrated using known protein sequences of divergent taxa along the phylogenetic tree. The sequences were compared to each other and to the sugarcane clusters selected using BLAST analysis, with the resulting table of p-values indicating the degree of divergence of each enzyme within different taxa and in relation to the sugarcane clusters. The results obtained by this strategy allowed us to identify the sugarcane proteins participating in the purine synthesis pathway.
Classification, expression pattern and comparative analysis of sugarcane expressed sequences tags (ESTs) encoding glycine-rich proteins (GRPs)
Authors: Fusaro Adriana , Mangeon Amanda , Junqueira Ricardo Magrani , Rocha Carla Andréa Benício , Coutinho Tatiana Cardoso , Margis Rogério , Sachetto-Martins Gilberto
Published: April 2005

Since the isolation of the first glycine-rich proteins (GRPs) in plants a wealth of new GRPs have been identified. The highly specific but diverse expression pattern of grp genes, taken together with the distinct sub-cellular localization of some GRP groups, clearly indicate that these proteins are involved in several independent physiological processes. Notwithstanding the absence of a clear definition of the role of GRPs in plant cells, studies conducted with these proteins have provided new and interesting insights into the molecular biology and cell biology of plants. Complexly regulated promoters and distinct mechanisms for the regulation of gene expression have been demonstrated and new protein targeting pathways, as well as the exportation of GRPs from different cell types have been discovered. These data show that GRPs can be useful as markers and/or models to understand distinct aspects of plant biology. In this paper, the structural and functional features of these proteins in sugarcane (Saccharum officinarum L.) are summarized. Since this is the first description of GRPs in sugarcane, special emphasis has been given to the expression pattern of these GRP genes by studying their abundance and prevalence in the different cDNA-libraries of the Sugarcane Expressed Sequence Tag (SUCEST) project . The comparison of sugarcane GRPs with GRPs from other species is also discussed.
Identification, classification and expression pattern analysis of sugarcane cysteine proteinases
Authors: Correa Gustavo Coelho , Margis-Pinheiro Márcia , Margis Rogério
Published: April 2005

Cysteine proteases are peptidyl hydrolyses dependent on a cysteine residue at the active center. The physical and chemical properties of cysteine proteases have been extensively characterized, but their precise biological functions have not yet been completely understood, although it is known that they are involved in a number of events such as protein turnover, cancer, germination, programmed cell death and senescence. Protein sequences from different cysteine proteinases, classified as members of the E.C.3.4.22 sub-sub-class, were used to perform a T-BLAST-n search on the Brazilian Sugarcane Expressed Sequence Tags project (SUCEST) data bank. Sequence homology was found with 76 cluster sequences that corresponded to possible cysteine proteinases. The alignments of these SUCEST clusters with the sequence of cysteine proteinases of known origins provided important information about the classification and possible function of these sugarcane enzymes. Inferences about the expression pattern of each gene were made by direct correlation with the SUCEST cDNA libraries from which each cluster was derived. Since no previous reports of sugarcane cysteine proteinases genes exists, this study represents a first step in the study of new biochemical, physiological and biotechnological aspects of sugarcane cysteine proteases.
Orofacial pain: basic mechanisms and implication for successful management
Authors: Conti Paulo César Rodrigues , Pertes Richard A. , Heir Gary M. , Nasri Cibele , Cohen Harold V. , Araújo Carlos dos Reis Pereira de
Published: April 2005

Orofacial Pain is the field of dentistry devoted to the diagnosis and management of chronic, complex, facial pain and oromotor disorders. This specialty in dentistry has developed over a number of years out of the need for better understanding of a group of patients who somehow were not clearly suffering from dental pain disorders, but still did not seem to have a clearly defined medical problem. After a long period of treating patients based on the mechanicist aspect of the disease, our profession has realized the importance of basic knowledge and differencial diagnosis in order to proper manage these patients. This modification in the approach has caused severe changes in education as well as in clinical activities. Historically considered as a problem of occlusion, Orofacial Pain, including Temporomandibular Disorders (TMD) has recently reached the status of "Specialty" in Brazil. Therefore, this paper aims to discuss the main differences between musculoskeletal and neuropathic pain and the importance of basic knowledge to perform successful management.
Análise da resposta tecidual de dois cimentos endodônticos
Authors: Nassri Maria Renata Giazzi , Lia Raphael Carlos Comelli , Bombana Antonio Carlos
Published: April 2005

No presente estudo foram analisados comparativamente dois cimentos endodônticos, Sealapex® e Apexit®, em relação à sua compatibilidade biológica, em tecido subcutâneo. Para tanto, foram utilizados doze ratos, machos, pesando em média 250g, divididos em três grupos, de acordo com o tempo de observação de 7, 21 e 45 dias. Como parte do estudo, foram feitas quatro incisões na região dorsal de cada rato, onde foram implantados quatro tubos de polietileno preenchidos com os cimentos em teste. Decorridos sete, vinte e um e quarenta e cinco dias da cirurgia, os animais foram sacrificados e os tecidos passaram por tramitação laboratorial para obtenção de cortes histológicos corados por hematoxilina-eosina, e posterior análise qualitativa dos resultados. Verificou-se que houve constante atividade macrofágica com o uso dos dois materiais, tendo o cimento Apexit® provocado uma reação tecidual mais agressiva em relação ao cimento Sealapex®, ao mesmo tempo em que, este último, mostrou melhores resultados quando analisadas a intensidade inflamatória provocada e a evolução da reparação tecidual.
Efeitos do alcoolismo crônico e da desintoxicação alcóolica sobre a glândula submandibular de ratos: estudo morfométrico
Authors: Faustino Simone Eloiza Sita , Stipp Antonio Carlos Marconi
Published: April 2005

Este estudo consiste de uma análise morfométrica de diversas estruturas parenquimatosas da glândula submandibular de ratos submetidos ao alcoolismo crônico experimental e de ratos recuperados após 30 dias de desintoxicação. Foram utilizados 3 grupos (5 animais por grupo): Controle, Alcoolizado e Desintoxicado. O fato do álcool atuar nos tecidos corporais, leva-nos a acreditar que possam ocorrer alterações na morfologia da glândula submandibular de ratos submetidos ao alcoolismo crônico. De fato, após os processos de alcoolização e desintoxicação há ocorrência de diferenças estatisticamente significantes quando confrontamos os 3 grupos entre si (dois a dois) no que se refere à massa corpórea dos animais (g) e da glândula submandibular (mg), ocorrendo, normalmente, uma redução tanto do grupo alcoolizado quanto do grupo desintoxicado em relação ao grupo controle e um significante aumento das massas corpórea e glandular do grupo desintoxicado em relação ao grupo alcoolizado. Quanto ao volume absoluto das diversas estruturas glandulares analisadas constatou-se diferenças estatisticamente significantes nos compartimentos acinar e do ducto granuloso, onde os grupos alcoolizado e desintoxicado apresentaram menor volume absoluto em relação ao grupo controle. Quanto aos outros parâmetros estereológicos estudados não houve diferenças estatisticamente significantes entre os grupos e entre as diversas estruturas glandulares analisadas.
Análise em microscopia eletrônica de varredura de superfícies radiculares antes e após raspagem e condicionamento com ácido cítrico e EDTA: um estudo "in vitro"
Authors: Bastos Neto Fabio Valverde Rodrigues , Greghi Sebastião Luiz Aguiar
Published: April 2005

A superfície radicular mais benéfica para a regeneração do periodonto ainda não está estabelecida. Visando uma busca por esta superfície este trabalho utilizou 14 dentes de humanos recém extraídos, seccionados em corpos de prova e tratados com raspagem e condicionamentos com ácido cítrico e EDTA e analisados em microscopia eletrônica de varredura. As superfícies hígidas apresentavam grânulos regulares provenientes de fibras do ligamento periodontal rompidas na exodontia. As superfícies contaminadas apresentavam massas de cálculo aderidas e áreas de reabsorção cementária. Quando raspadas com curetas manuais as superfícies foram cobertas por "smear layer". O condicionamento com ácido cítrico foi eficiente na remoção total do "smear layer", assim como o condicionamento com EDTA gel, e o condicionamento com EDTA líquido não teve efetividade total na sua remoção. Tomando como padrão as superfícies hígidas, conclui-se que os tratamentos que mais se aproximam do ideal são a raspagem e condicionamento com ácido cítrico e EDTA gel sem diferenças entre si.
Morphometrical analysis of cleaning capacity using nickel-titanium rotary instrumentation associated with irrigating solutions in mesio-distal flattened root canals
Authors: Marchesan Melissa Andréia , Arruda Marcos Porto de , Silva-Sousa Yara T. Correa , Saquy Paulo César , Pecora Jesus Djalma , Sousa-Neto Manoel D.
Published: April 2005

Variations in the internal anatomy of root canals may interfere with the success of root canal because tissue remnants may remain in the isthmus, re-entrances and ramifications of flattened root canals making instrumentation more difficult. Successful root canal treatment depends fundamentally on shaping, cleaning, disinfection and obturation. This study verified the quality of cleaning of ProFile .04 rotary technique associated with different irrigating solutions: 0.5% sodium hypochlorite, calcium hydroxide + Tergentol and 2% chlorhexidine in canals with mesio-distal flattening. Twelve human mandibular central incisors were randomly divided into 3 groups and instrumented up to ProFile 0.4 #35 file after cervical preparation, and processed histologically. After optical microscopic evaluation, statistical analysis showed that the percentage of cleaning of the three irrigating solutions was statistically different. Two-by-two comparisons classified the irrigating solutions in increasing order of cleaning: calcium hydroxide + Tergentol < chlorhexidine < 0.5% sodium hypochlorite.
Expressão imuno-histoquímica da vimentina e do HHF-35 em fibroma de células gigantes, hiperplasia fibrosa e fibroma da mucosa oral
Authors: Miguel Márcia Cristina da Costa , Andrade Emanuel Savio de Souza , Rocha Danielle Albuquerque Pires , Freitas Roseana de Almeida , Souza Lélia Batista de
Published: April 2005

O fibroma de células gigantes, a hiperplasia fibrosa e o fibroma constituem algumas das mais freqüentes lesões fibrosas orais, compartilhando características clínicas e histopatológicas. Este estudo teve o objetivo de investigar a imunorreatividade das células gigantes estreladas mono, bi ou multinucleadas, características do fibroma de células gigantes e, ocasionalmente presentes na hiperplasia fibrosa e no fibroma, a anticorpos anti-vimentina e anti-actina de músculo (HHF-35), visando detectar características fenotípicas destas células. Os resultados demonstraram que na maioria dos casos houve imunorreatividade para a vimentina, sugerindo um fenótipo fibroblástico para estas células.
Determination of appropriate exposure to fluoride in non-EME countries in the future
Authors: Cury Jaime Aparecido , Tabchoury Cínthia Pereira Machado
Published: April 2005

An appropriate exposure to fluoride must be able to interfere with the development of dental caries (benefit) without great concern for dental fluorosis (risks). This condition in relation to individual seems feasible leading to a rational use of fluoride. Nevertheless, dealing with population and particularly non-EME countries (non-Established Market Economies or developing), the most suitable method of fluoride use will depend on each nation. On the other hand, each country should have a public health program to control dental caries as part of its health system. The choice between fluoridated dentifrice or fluoridated drinking water and the option for salt will depend on its applicability in each country. At the same time, it is important that either the appropriate exposure to a community method of fluoride use as well as the association with other methods and preventive measures in relation to risks-benefits are evaluated for each country. The determination of an appropriate exposure to fluoride in non-EME countries in the future will depend on critical analysis of how it has been used at present. Available data have shown that some non-EME countries have even been able to revert the dramatic situation of dental caries in their population, but in others caries experience continues a public health problem. Nevertheless, in other countries the increase in caries prevalence, which was expected, has not occurred but endemic fluorosis has been a concern. The challenges for non-EME countries are huge and identical solutions cannot be used for distinct problems.
Diametral tensile strength and water sorption of glass-ionomer cements used in Atraumatic Restorative Treatment
Authors: Cefaly Daniela Francisca Gigo , Franco Eduardo Batista , Mondelli Rafael Francisco Lia , Francisconi Paulo Afonso Silveira , Navarro Maria Fidela de Lima
Published: April 2005

The purposes of this study were to evaluate the diametral tensile strength and the water sorption of restorative (Fuji IX and Ketac Molar) and resin-modified glass-ionomer luting cements (ProTec Cem, Fuji Plus and Vitremer) mixed at both manufacturer and increased powder: liquid ratio, for their use in the Atraumatic Restorative Treatment. A conventional restorative glass-ionomer (Ketac Fil) was used as control. Specimens (6.0 mm in diameter x 3.0 mm in height) were prepared and stored (1 hour, 1 day and 1 week) for a diametral tensile strength test. Data were subjected to two-way ANOVA and Tukey tests (p<0.05). For the water sorption test, specimens of 15.0 mm in diameter x 0.5 mm in height were prepared and transfered to desiccators until a constant mass was obtained. Then the specimens were immersed in deionized water for 7 days, weighed and reconditioned to a constant mass in desiccators. Data were subjected to one-way ANOVA and Tukey tests (p<0.05). Five specimens of each studied material and consistency were prepared for each test. The resin-modified glass-ionomer cements showed significantly higher strength than the conventional materials. Except for ProTec Cem, the diametral tensile strength of the resin-modified materials significantly increased from luting to restorative consistency. Except for ProTec Cem, the water sorption of the resin-modified glass ionomers was higher than the others. The water sorption of resin-modified materials at restorative consistency was significantly lower than at luting consistency. Resin-modified glass-ionomer luting cements mixed at increased powder: liquid ratio showed better properties than at luting consistency.
Grau de infiltração marginal de duas técnicas restauradoras com cimento de ionômero de vidro em molares decíduos: estudo comparativo " in vitro
Authors: Kramer Paulo Floriani , Pires Luiz Antonio Gaieski , Tovo Maximiano Ferreira , Kersting Tatiana Canever , Guerra Simone
Published: April 2005

A técnica do condicionamento ácido e o desenvolvimento e aprimoramento de novos materiais restauradores com características adesivas têm levado a mudanças importantes nas concepções e nos princípios da dentística operatória e restauradora. O objetivo deste estudo foi avaliar a microinfiltração marginal em cavidades proximais de molares decíduos restaurados com cimento de ionômero de vidro modificado por resina (Vitremer, 3M) comparando duas diferentes técnicas: a técnica convencional (conforme recomendações do fabricante) e a técnica de hibridização (ácido fosfórico-37% e sistema adesivo Scotchbond Multi-Uso, 3M ). Foram utilizados 20 molares decíduos hígidos, onde foram preparadas cavidades proximais. A amostra foi dividida aleatoriamente em 2 grupos. No grupo 1 foi utilizado a técnica convencional e no grupo 2 a técnica com condicionamento ácido e aplicação de sistema adesivo. Os dentes foram submetidos ao processo de ciclagem térmica, impermeabilizados, mantendo uma área de 2mm² na margem cervical da restauração e imersos em solução de azul de metileno a 0,5%, por 72 horas. A seguir, foram seccionados e avaliados por um único examinador, que estabeleceu o grau de microinfiltração. Os dados obtidos revelaram que as duas técnicas utilizadas apresentaram microinfiltração marginal em diferentes graus, e que não houve diferença estatisticamente significante entre elas.
Diagnostic reproducibility of the elongated styloid process
Authors: Scaf Gulnara , Freitas Deborah Queiroz de , Loffredo Leonor de Castro Monteiro
Published: April 2005

The aim of this study was to estimate the reproducibility related to the presence and to the measurements of elongated styloid process (ESP), based on panoramic radiographs and the prevalence of ESP. Experimental design: one hundred sixty six panoramic radiographs were used, from edentulous patients from the Radiology Clinic files, at Araraquara Dental School, Unesp, during a four-year period. One hundred and twenty one were female and 45 were male. Two calibrated observers evaluated the radiographs. A caliper was used to measure, in mm, the ESP from the base of the temporal bone to the tip of the structure. The ESP was considered present when the measurements were 30mm or more. Kappa statistics (k ) and intra-class correlation coefficient (r ), were applied to estimate the reproducibility. The results showed that related to the presence of ESP, the interobserver agreement was k =0.85. Related to the measurements of ESP, the interobserver agreement was r =0.52. The prevalence of ESP was estimated in 12.6%. ESP distribution in females was similar to that for males. In conclusion, we found a greater level of agreement when observers evaluated the presence of ESP than when they did the measurement of ESP. The prevalence of ESP was 12.6%.
A study of the time necessary for calcium hydroxide to eliminate microorganisms in infected canals
Authors: Estrela Carlos , Estrela Cyntia Rodrigues de Araújo , Pécora Jesus Djalma
Published: April 2005

The objective of this study was to analyze the time necessary for calcium hydroxide to eliminate microorganisms in infected canals. A total of 168 human anterior teeth were prepared and sterilized. One hundred sixty two teeth were inoculated with suspensions of S. aureus, E. faecalis, P. aeruginosa, B. subtilis, C. albicans. Three teeth were used as negative control and three as positive control. Root canals were irrigated with saline and filled with calcium hydroxide paste (CHP). At intervals of 1 minute, and at 7, 15, 21, 27, 30, 45, 60, and 90 days, CHP was removed, samples were collected and immersed in Letheen Broth (LB). Microbial growth was analyzed by two methods, turbidity of the culture medium and subculture on a Brain heart Infusion. After looking for medium change, an inoculum of 0.1 mL obtained from LB was transferred to 7 mL of Brain Heart Infusion (BHI), and subsequently incubated at 37°C for 48 hours. Microbial growth was checked by turbidity of the culture medium and in some cases by Gram stain. All assays were carried out in triplicate under aseptic technique. The results indicated that the antimicrobial effect on the cultures of S. aureus, E. faecalis, P. aeruginosa, B. subtilis, C. albicans and one mixed culture in infected canals by CHP occurred in 60 days.
Comparative stereologic study between secretory and maturation ameloblasts in rat incisors
Authors: Assis Gerson Francisco de , Ribeiro Daniel Araki , Campos Patrícia Danieli , Cestari Tania Mary , Taga Rumio
Published: April 2005

The ameloblasts both in secretion phase and in smooth-ended ameloblasts in maturation phase were studied using stereologic methods in transmission electron microscopy (TEM). From secretion to maturation phase of amelogenesis, the nucleus volume decreased 23% and cytoplasm volume did not show significant changes; the total volume and surface of the rough endoplasmic reticulum (RER) decreased 74% and 90%, respectively, and of the mitochondria increased 742% and 384%, respectively; the surface-to-volume ratio for RER and mitochondria decrease 59% and 42%, respectively; and the predominantly apical secretory granules disappeared joined at Tomes’ process and lysosomes and phagic vacuoles have appeared principly in supranuclear cytoplasm. Although significant morphologic variation occurs from the secretory to the maturation phase of the ameloblasts, their cytoplasm volume remains unaltered.
Mechanical properties of dental restorative materials: relative contribution of laboratory tests
Authors: Wang Linda , D'Alpino Paulo Henrique Perlatti , Lopes Lawrence Gonzaga , Pereira José Carlos
Published: April 2005

A wide variety of dental products that are launched on the market becomes the correct selection of these materials a difficult task. Although the mechanical properties do not necessarily represent their actual clinical performance, they are used to guide the effects of changes in their composition or processing on these properties. Also, these tests might help somehow the clinician to choose once comparisons between former formulations and new ones, as well as, with the leading brand, are highlighted by manufactures. This paper presents a review of the most important laboratory tests. In this manner, the knowledge of these tests will provide a critical opinion related to the properties of different dental materials.
One-year clinical evaluation of tooth-colored materials in non-carious cervical lesions
Authors: Santiago Sérgio Lima , Franco Eduardo Batista , Mendonça Juliano Sartori , Lauris José Roberto Pereira , Navarro Maria Fidela de Lima
Published: April 2005

The purpose of this study was to assess the clinical performance of bonded composite (Excite/Tetric Ceram - Vivadent) versus a resin-modified glass ionomer cement (Vitremer - 3M) for restoring non-carious cervical lesions. A total of 70 restorations (thirty-five per material) were placed in 30 patients, 18-50 aged, by one operator. Rubber dam was employed in all cases, lesions were pumiced, enamel margins were not beveled, and no mechanical retention was placed. The restorations were directly assessed by two independent evaluators using modified-USPHS criteria for six clinical categories. The ratings for clinical acceptability restorations (alfa plus bravo) were as follows (Tetric Ceram/Vitremer): retention (86%/100%), marginal integrity (100%/100%), marginal discoloration (100%/100%), wear (97%/100%), postoperative sensitivity (100%/100%) and recurrent caries (100%/100%). Statistical analysis was completed with Fisher's exact or Pearson Chi-square tests at a significance level of 5% (P<0.05). Results showed that almost all restorations were clinically satisfactory with no significant differences between materials groups. Five restorations of Excite/Tetric Ceram failed. No restorations of Vitremer have yet failed.
"In vitro" evaluation of the apical sealing of root canals obturated with different techniques
Authors: Brosco Viviane Haiub , Bernardineli Norberti , Moraes Ivaldo Gomes de
Published: April 2005

The purpose of this study was to compare the apical sealing of root canals obturated with different techniques. One hundred-six human mandibular incisors were submitted to instrumentation by means of the step-back technique. After instrumentation, one hundred teeth received an impermeable coating on the external surfaces of the crown and root (except for the area nearby the apical foramen). Afterwards, they were divided in five groups containing twenty elements each, according to the obturation technique employed: 1. lateral condensation with Kerr file; 2. continuous wave of condensation technique with System B; 3. thermoplasticized injectable gutta-percha technique with the Ultrafil system; 4. mechanically thermoplasticized gutta-percha with the JS Quick-Fill system and 5. thermoplasticized gutta-percha associated to a master cone with the Microseal system. The six remaining teeth were employed as negative and positive controls. After obturation, the access cavities were sealed and the teeth were immersed in aqueous 2% methylene blue dye for 72 hours at 37ºC. After that, the teeth were longitudinally sectioned and the apical microleakage was evaluated in a stereomicroscope. The Microseal system presented the best apical sealing ability, followed by System B, JS Quick-Fill, Ultrafil and the lateral condensation technique. The statistical analysis of the results demonstrated that: 1. the Microseal system presented an apical sealing similar to System B and better than the other groups; 2. System B presented better apical sealing than the lateral condensation technique, being similar to the other groups; and 3. the lateral condensation, Ultrafil and JS Quick-Fill groups demonstrated similar sealing ability.
Influência da penetração de instrumentos, empregados na condensação lateral ativa, na qualidade da obturação de canais radiculares
Authors: Pinheiro Bethânia Camargo , Bramante Alexandre Silva , Hussne Renata Pardini
Published: April 2005

OBJETIVO: comparar a qualidade da obturação e a diferença de profundidade de penetração, no interior do canal radicular, dos espaçadores digitais (Finger Spreader), limas tipo Kerr, Flexofile e Nitiflex, quando utilizados como espaçadores, durante a obturação pela Técnica da Condensação Lateral Ativa. MATERIAL E MÉTODOS: foram utilizados 40 dentes molares permanentes humanos, extraídos, instrumentados pela Técnica de Goerig Modificada e divididos em quatro grupos. No grupo I foi utilizado o espaçador digital C; no grupo II, lima tipo Kerr; no grupo III, lima Flexofile e, no grupo IV, lima Nitiflex, todos com diâmetro (D1) ou diâmetro da ponta correspondente ao diâmetro de uma lima 30 (0,30mm), para abertura de espaço para colocação dos cones secundários, durante a Técnica da Condensação Lateral Ativa. Avaliou-se e submeteu-se à análise estatística (Kruskal-Wallis e teste de Dunn) a qualidade radiográfica da obturação e a profundidade de penetração dos instrumentos. RESULTADOS E CONCLUSÃO: quanto à análise radiográfica da qualidade da obturação, o grupo II foi o que apresentou o melhor resultado, seguido dos grupos I, IV e III, respectivamente. Em relação à profundidade de penetração dos instrumentos, o grupo IV aproximou-se mais da distância desejada, ou seja, 1 milímetro aquém do comprimento de trabalho, seguido, respectivamente, dos grupos II, III e I.