bluuebunny/crossref_metadata_2025 huggingface dataset:
Differential Mitochondrial Genome Expression of Four Hylid Frog Species under Low-Temperature Stress and Its Relationship with Amphibian Temperature Adaptation
Authors: Hong Yue-Huan , Yuan Ya-Ni , Li Ke , Storey Kenneth B. , Zhang Jia-Yong , Zhang Shu-Sheng , Yu Dan-Na
Published: May 2024

Extreme weather poses huge challenges for animals that must adapt to wide variations in environmental temperature and, in many cases, it can lead to the local extirpation of populations or even the extinction of an entire species. Previous studies have found that one element of amphibian adaptation to environmental stress involves changes in mitochondrial gene expression at low temperatures. However, to date, comparative studies of gene expression in organisms living at extreme temperatures have focused mainly on nuclear genes. This study sequenced the complete mitochondrial genomes of five Asian hylid frog species: Dryophytes japonicus, D. immaculata, Hyla annectans, H. chinensis and H. zhaopingensis. It compared the phylogenetic relationships within the Hylidae family and explored the association between mitochondrial gene expression and evolutionary adaptations to cold stress. The present results showed that in D. immaculata, transcript levels of 12 out of 13 mitochondria genes were significantly reduced under cold exposure (p < 0.05); hence, we put forward the conjecture that D. immaculata adapts by entering a hibernation state at low temperature. In H. annectans, the transcripts of 10 genes (ND1, ND2, ND3, ND4, ND4L, ND5, ND6, COX1, COX2 and ATP8) were significantly reduced in response to cold exposure, and five mitochondrial genes in H. chinensis (ND1, ND2, ND3, ND4L and ATP6) also showed significantly reduced expression and transcript levels under cold conditions. By contrast, transcript levels of ND2 and ATP6 in H. zhaopingensis were significantly increased at low temperatures, possibly related to the narrow distribution of this species primarily at low latitudes. Indeed, H. zhaopingensis has little ability to adapt to low temperature (4 °C), or maybe to enter into hibernation, and it shows metabolic disorder in the cold. The present study demonstrates that the regulatory trend of mitochondrial gene expression in amphibians is correlated with their ability to adapt to variable climates in extreme environments. These results can predict which species are more likely to undergo extirpation or extinction with climate change and, thereby, provide new ideas for the study of species extinction in highly variable winter climates.
Genome-Wide Identification of TLP Gene Family in Populus trichocarpa and Functional Characterization of PtTLP6, Preferentially Expressed in Phloem
Authors: Guo Mengjie , Ma Xujun , Xu Shiying , Cheng Jiyao , Xu Wenjing , Elsheery Nabil Ibrahim , Cheng Yuxiang
Published: May 2024

Thaumatin-like proteins (TLPs) in plants are involved in diverse biotic and abiotic stresses, including antifungal activity, low temperature, drought, and high salinity. However, the roles of the TLP genes are rarely reported in early flowering. Here, the TLP gene family was identified in P. trichocarpa. The 49 PtTLP genes were classified into 10 clusters, and gene structures, conserved motifs, and expression patterns were analyzed in these PtTLP genes. Among 49 PtTLP genes, the PtTLP6 transcription level is preferentially high in stems, and GUS staining signals were mainly detected in the phloem tissues of the PtTLP6pro::GUS transgenic poplars. We generated transgenic Arabidopsis plants overexpressing the PtTLP6 gene, and its overexpression lines showed early flowering phenotypes. However, the expression levels of main flowering regulating genes were not significantly altered in these PtTLP6-overexpressing plants. Our data further showed that overexpression of the PtTLP6 gene led to a reactive oxygen species (ROS) burst in Arabidopsis, which might advance the development process of transgenic plants. In addition, subcellular localization of PtTLP6-fused green fluorescent protein (GFP) was in peroxisome, as suggested by tobacco leaf transient transformation. Overall, this work provides a comprehensive analysis of the TLP gene family in Populus and an insight into the role of TLPs in woody plants.
Probing the Conformational Restraints of DNA Damage Recognition with β-L-Nucleotides
Authors: Yudkina Anna V. , Kim Daria V. , Zharkov Timofey D. , Zharkov Dmitry O. , Endutkin Anton V.
Published: May 2024

The DNA building blocks 2′-deoxynucleotides are enantiomeric, with their natural β-D-configuration dictated by the sugar moiety. Their synthetic β-L-enantiomers (βLdNs) can be used to obtain L-DNA, which, when fully substituted, is resistant to nucleases and is finding use in many biosensing and nanotechnology applications. However, much less is known about the enzymatic recognition and processing of individual βLdNs embedded in D-DNA. Here, we address the template properties of βLdNs for several DNA polymerases and the ability of base excision repair enzymes to remove these modifications from DNA. The Klenow fragment was fully blocked by βLdNs, whereas DNA polymerase κ bypassed them in an error-free manner. Phage RB69 DNA polymerase and DNA polymerase β treated βLdNs as non-instructive but the latter enzyme shifted towards error-free incorporation on a gapped DNA substrate. DNA glycosylases and AP endonucleases did not process βLdNs. DNA glycosylases sensitive to the base opposite their cognate lesions also did not recognize βLdNs as a correct pairing partner. Nevertheless, when placed in a reporter plasmid, pyrimidine βLdNs were resistant to repair in human cells, whereas purine βLdNs appear to be partly repaired. Overall, βLdNs are unique modifications that are mostly non-instructive but have dual non-instructive/instructive properties in special cases.
Nonclinical Evaluation of Single-Mutant E. coli Asparaginases Obtained by Double-Mutant Deconvolution: Improving Toxicological, Immune and Inflammatory Responses
Authors: Ruiz-Lara Grace , Costa-Silva Tales A. , Muso-Cachumba Jorge Javier , Cevallos Espinel Johanna , Fontes Marina Gabriel , Garcia-Maya Mitla , Rahman Khondaker Miraz , Rangel-Yagui Carlota de Oliveira , Monteiro Gisele
Published: May 2024

Acute lymphoblastic leukaemia is currently treated with bacterial L-asparaginase; however, its side effects raise the need for the development of improved and efficient novel enzymes. Previously, we obtained low anti-asparaginase antibody production and high serum enzyme half-life in mice treated with the P40S/S206C mutant; however, its specific activity was significantly reduced. Thus, our aim was to test single mutants, S206C and P40S, through in vitro and in vivo assays. Our results showed that the drop in specific activity was caused by P40S substitution. In addition, our single mutants were highly stable in biological environment simulation, unlike the double-mutant P40S/S206C. The in vitro cell viability assay demonstrated that mutant enzymes have a higher cytotoxic effect than WT on T-cell-derived ALL and on some solid cancer cell lines. The in vivo assays were performed in mice to identify toxicological effects, to evoke immunological responses and to study the enzymes’ pharmacokinetics. From these tests, none of the enzymes was toxic; however, S206C elicited lower physiological changes and immune/allergenic responses. In relation to the pharmacokinetic profile, S206C exhibited twofold higher activity than WT and P40S two hours after injection. In conclusion, we present bioengineered E. coli asparaginases with high specific enzyme activity and fewer side effects.
Recent Advancements in Bone Tissue Engineering: Integrating Smart Scaffold Technologies and Bio-Responsive Systems for Enhanced Regeneration
Authors: Percival Kelly M. , Paul Vinod , Husseini Ghaleb A.
Published: May 2024

In exploring the challenges of bone repair and regeneration, this review evaluates the potential of bone tissue engineering (BTE) as a viable alternative to traditional methods, such as autografts and allografts. Key developments in biomaterials and scaffold fabrication techniques, such as additive manufacturing and cell and bioactive molecule-laden scaffolds, are discussed, along with the integration of bio-responsive scaffolds, which can respond to physical and chemical stimuli. These advancements collectively aim to mimic the natural microenvironment of bone, thereby enhancing osteogenesis and facilitating the formation of new tissue. Through a comprehensive combination of in vitro and in vivo studies, we scrutinize the biocompatibility, osteoinductivity, and osteoconductivity of these engineered scaffolds, as well as their interactions with critical cellular players in bone healing processes. Findings from scaffold fabrication techniques and bio-responsive scaffolds indicate that incorporating nanostructured materials and bioactive compounds is particularly effective in promoting the recruitment and differentiation of osteoprogenitor cells. The therapeutic potential of these advanced biomaterials in clinical settings is widely recognized and the paper advocates continued research into multi-responsive scaffold systems.
Effect of Synthesis Conditions on the Photoluminescent Properties of Si-Substituted CaYAlO4:Eu: Sources of Experimental Errors in Solid-State Synthesis
Authors: Oh Ju Hyun , Lee Yookyoung , Kim Jihee , Hong Woo Tae , Yang Hyun Kyoung , Kang Mijeong , Lee Seunghun
Published: May 2024

To improve the luminescent efficiency of and to design the color spectrum of phosphors, the comprehensive understanding of the correlation between physical parameters and luminescent properties is imperative, necessitating systematic experimental studies. However, unintentional variations across individually prepared samples impede the thorough investigation of the correlation. In this study, we investigate the possible sources of unintentional variation in the photoluminescence properties of phosphors during sample preparation using a solid-state reaction, explicitly focusing on the ball milling process. Based on the quantitative features of the photoluminescent properties and their associated statistical errors, we explore the impact of unintentional variation alongside intended systematic variation, highlighting its potential to obscure meaningful trends.
Comparison of the Trapping Efficacy of Locally Modified Gravid Aedes Trap and Autocidal Gravid Ovitrap for the Monitoring and Surveillance of Aedes aegypti Mosquitoes in Tanzania
Authors: Machange Jane Johnson , Maasayi Masudi Suleiman , Mundi John , Moore Jason , Muganga Joseph Barnabas , Odufuwa Olukayode G. , Moore Sarah J. , Tenywa Frank Chelestino
Published: May 2024

The study assessed the trapping efficacy of locally modified (1) Gravid Aedes Trap (GAT) lined with insecticide-treated net (ITN) as a killing agent and (2) Autocidal Gravid Ovitrap (AGO) with sticky board in the semi-field system (SFS) and field setting. Fully balanced Latin square experiments were conducted to compare GAT lined with ITN vs. AGO, both with either yeast or grass infusion. Biogent-Sentinel (BGS) with BG-Lure and no CO2 was used as a standard trap for Aedes mosquitoes. In the SFS, GAT outperformed AGO in collecting both nulliparous (65% vs. 49%, OR = 2.22, [95% CI: 1.89–2.60], p < 0.001) and gravid mosquitoes (73% vs. 64%, OR = 1.67, [95% CI: 1.41–1.97], p < 0.001). Similar differences were observed in the field. Yeast and grass infusion did not significantly differ in trapping gravid mosquitoes (OR = 0.91, [95% CI: 0.77–1.07], p = 0.250). The use of ITN improved mosquito recapture from 11% to 70% in the SFS. The same trend was observed in the field. Yeast was chosen for further evaluation in the optimized GAT due to its convenience and bifenthrin net for its resistance management properties. Mosquito density was collected when using 4× GATs relative to BGS-captured gravid mosquitoes 64 vs. 58 (IRR = 0.82, [95% CI: 0.35–1.95], p = 0.658) and showed no density dependence. Deployment of multiple yeast-baited GAT lined with bifenthrin net is cost-effective (single GAT < $8) compared to other traps such as BGS ($160).
Hybridizing Deep Neural Networks and Machine Learning Models for Aerial Satellite Forest Image Segmentation
Authors: Kwenda Clopas , Gwetu Mandlenkosi , Fonou-Dombeu Jean Vincent
Published: May 2024

Forests play a pivotal role in mitigating climate change as well as contributing to the socio-economic activities of many countries. Therefore, it is of paramount importance to monitor forest cover. Traditional machine learning classifiers for segmenting images lack the ability to extract features such as the spatial relationship between pixels and texture, resulting in subpar segmentation results when used alone. To address this limitation, this study proposed a novel hybrid approach that combines deep neural networks and machine learning algorithms to segment an aerial satellite image into forest and non-forest regions. Aerial satellite forest image features were first extracted by two deep neural network models, namely, VGG16 and ResNet50. The resulting features are subsequently used by five machine learning classifiers including Random Forest (RF), Linear Support Vector Machines (LSVM), k-nearest neighbor (kNN), Linear Discriminant Analysis (LDA), and Gaussian Naive Bayes (GNB) to perform the final segmentation. The aerial satellite forest images were obtained from a deep globe challenge dataset. The performance of the proposed model was evaluated using metrics such as Accuracy, Jaccard score index, and Root Mean Square Error (RMSE). The experimental results revealed that the RF model achieved the best segmentation results with accuracy, Jaccard score, and RMSE of 94%, 0.913 and 0.245, respectively; followed by LSVM with accuracy, Jaccard score and RMSE of 89%, 0.876, 0.332, respectively. The LDA took the third position with accuracy, Jaccard score, and RMSE of 88%, 0.834, and 0.351, respectively, followed by GNB with accuracy, Jaccard score, and RMSE of 88%, 0.837, and 0.353, respectively. The kNN occupied the last position with accuracy, Jaccard score, and RMSE of 83%, 0.790, and 0.408, respectively. The experimental results also revealed that the proposed model has significantly improved the performance of the RF, LSVM, LDA, GNB and kNN models, compared to their performance when used to segment the images alone. Furthermore, the results showed that the proposed model outperformed other models from related studies, thereby, attesting its superior segmentation capability.
Implicit 3D Human Reconstruction Guided by Parametric Models and Normal Maps
Authors: Ren Yong , Zhou Mingquan , Wang Yifan , Feng Long , Zhu Qiuquan , Li Kang , Geng Guohua
Published: May 2024

Accurate and robust 3D human modeling from a single image presents significant challenges. Existing methods have shown potential, but they often fail to generate reconstructions that match the level of detail in the input image. These methods particularly struggle with loose clothing. They typically employ parameterized human models to constrain the reconstruction process, ensuring the results do not deviate too far from the model and produce anomalies. However, this also limits the recovery of loose clothing. To address this issue, we propose an end-to-end method called IHRPN for reconstructing clothed humans from a single 2D human image. This method includes a feature extraction module for semantic extraction of image features. We propose an image semantic feature extraction aimed at achieving pixel model space consistency and enhancing the robustness of loose clothing. We extract features from the input image to infer and recover the SMPL-X mesh, and then combine it with a normal map to guide the implicit function to reconstruct the complete clothed human. Unlike traditional methods, we use local features for implicit surface regression. Our experimental results show that our IHRPN method performs excellently on the CAPE and AGORA datasets, achieving good performance, and the reconstruction of loose clothing is noticeably more accurate and robust.
Control of Fusarium Head Blight of Wheat with Bacillus velezensis E2 and Potential Mechanisms of Action
Authors: Ma Jianing , Gao Chen , Lin Meiwei , Sun Zhenzhong , Zhao Yuhao , Li Xin , Zhao Tianyuan , Xu Xingang , Sun Weihong
Published: May 2024

Wheat plants are impacted by Fusarium head blight (FHB) infection, which poses a huge threat to wheat growth, development, storage and food safety. In this study, a fungal strain was isolated from diseased wheat plants and identified as Fusarium asiaticum F1, known to be a member of the Fusarium graminearum species complex, agents causally responsible for FHB. In order to control this disease, new alternatives need to be developed for the use of antagonistic bacteria. Bacillus velezensis E2 (B. velezensis E2), isolated from a previous investigation in our laboratory, showed a notable inhibitory effect on F. asiaticum F1 growth and deoxynivalenol (DON) synthesis in grains. The spore germination of F. asiaticum F1 was significantly reduced and the spores showed vesicular structures when treated with B. velezensis E2. Observations using scanning electron microscopy (SEM) showed that the hyphae of F. asiaticum F1 were shrunken and broken when treated with B. velezensis E2. The RNA-seq results of F1 hyphae treated with B. velezensis E2 showed that differentially expressed genes (DEGs), which were involved in multiple metabolic pathways such as toxin synthesis, autophagy process and glycan synthesis, especially the genes associated with DON synthesis, were significantly downregulated. In summary, those results showed that B. velezensis E2 could inhibit F. asiaticum F1 growth and reduce the gene expression of DON synthesis caused by F1. This study provides new insights and antagonistic mechanisms for the biological control of FHB during wheat growth, development and storage.
Digenic Inheritance of Mutations in Homologous Recombination Genes in Cancer Patients
Authors: Freire Maria Valeria , Martin Marie , Segers Karin , Sepulchre Edith , Leroi Natacha , Coupier Jérôme , Kalantari Hassan Rezaei , Wolter Pascal , Collignon Joëlle , Polus Marc , Plomteux Olivier , Josse Claire , Bours Vincent
Published: May 2024

Background/Objectives: BRCA1, BRCA2, ATM, and CHEK2 are known cancer predisposition genes (CPGs), but tumor risk in patients with simultaneous pathogenic variants (PVs) in CPGs remains largely unknown. In this study, we describe six patients from five families with multiple cancers who coinherited a combination of PVs in these genes. Methods: PVs were identified using NGS DNA sequencing and were confirmed by Sanger. Results: Families 1, 2, and 3 presented PVs in BRCA2 and ATM, family 4 in BRCA2 and BRCA1, and family 5 in BRCA2 and CHEK2. PVs were identified using NGS DNA sequencing and were confirmed by Sanger. The first family included patients with kidney, prostate, and breast cancer, in addition to pancreatic adenocarcinomas. In the second family, a female had breast cancer, while a male from the third family had prostate, gastric, and pancreatic cancer. The fourth family included a male with pancreatic cancer, and the fifth family a female with breast cancer. Conclusions: The early age of diagnosis and the development of multiple cancers in the reported patients indicate a very high risk of cancer in double-heterozygous patients associated with PVs in HR-related CPGs. Therefore, in families with patients who differ from other family members in terms of phenotype, age of diagnosis, or type of cancer, the cascade testing needs to include the study of other CPGs.
Proposed Radiographic Parameters to Optimize Clinical Outcomes in Trapezio-Metacarpal Prosthesis Placement Using CT Imaging, with 1-Year Follow-Up
Authors: Piccirilli Eleonora , Primavera Matteo , Salvati Chiara , Oliva Francesco , Tarantino Umberto
Published: May 2024

Purpose: Addressing trapezio-metacarpal (TMC) osteoarthritis often involves considering TMC joint replacement. Utilizing TMC prostheses offers advantages such as preserving the thumb length and more accurately replicating the thumb’s range of motion (ROM). TMC prostheses have an intrinsic risk of dislocation and aseptic loosening. Analyzing pre- and postoperative imaging can mitigate complications and improve prosthetic placement, providing insights into both successes and potential challenges, refining overall clinical outcomes. Materials and methods: We conducted a prospective analysis of 30 patients with severe TMC arthritis treated with a Touch© (Kerimedical, Geneva, Switzerland) prosthesis in 2021–2023: X-ray and CT protocols were developed to analyze A) the correct prosthesis placement and B) its correlation with clinical outcomes (VAS, Kapandji and QuickDASH scores) by performing Spearman correlation analysis. Results: The average differences in trapezium height and M1-M2 ratio pre- and post-surgery were, respectively, 1.8 mm (SD ± 1.7; p < 0.001) and 0.04 mm (SD ± 0.04; p = 0.017). Pre-to-postoperative M1 axis length increased by an average of 2.98 mm (SD ± 3.84; p = 0.017). Trapezial cup sinking, indicated by the trapezium index, measured 4.6 mm (SD ± 1.2). The metacarpal index averaged at 11.3 mm (SD ± 3.3). The distance between the centers of the trapezium distal surface and the prosthesis cup was 2.23 mm (SD ± 1.4). The Spearman correlation analysis gave the following results: negative correlations were highlighted between postoperative VAS scores and the M1/M2 ratio and residual trapezium height (correlation coefficient: −0.7, p = 0.03 and −0.064, p = 0.03, respectively) at 6 months; a negative correlation was found at the 3-month mark between QuickDASH and the trapezium residual height (correlation coefficient: −0.07, p = 0.01); and a positive correlation was found for the trapezium index at 1 month (correlation coefficient: 0.07, p = 0.03) and 3 months (p = 0.04) using the Kapandji score. Similarly, we found a positive correlation between the distance between the prosthesis and trapezium centers and QuickDASH score at 1 and 3 months (correlation coefficient: 0.066, p = 0.03; correlation coefficient: 0.07, p = 0.05, respectively) and a positive correlation between prosthesis axis and the residual first metacarpal angle with QuickDASH score at 3 months (correlation coefficient: 0.07, p = 0.02). Conclusions: Pre- and postoperative systematic imaging analysis should become a method for predicting complications and guiding recovery in TMC prosthesis: CT imaging could provide us with radiographical landmarks that are intrinsically linked to clinical outcomes. Further research is necessary to fuel a protocol for the correct intraoperative TMC prosthesis implantation.
Properties and Possibilities of Using Biochar Composites Made on the Basis of Biomass and Waste Residues Ferryferrohydrosol Sorbent
Authors: Wystalska Katarzyna , Kowalczyk Mariusz , Kamizela Tomasz , Worwąg Małgorzata , Zabochnicka Magdalena
Published: May 2024

Biochar enriched with metals has an increased potential for sorption of organic and inorganic pollutants. The aim of the research was to identify the possibility of using biochar composites produced on the basis of waste plant biomass and waste FFH (ferryferrohydrosol) containing iron atoms, after CO2 capture. The composites were produced in a one-stage or two-stage pyrolysis process. Their selected properties were determined as follows: pH, ash content, C, H, N, O, specific surface area, microstructure and the presence of surface functional groups. The produced biochar and composites had different properties resulting from the production method and the additive used. The results of experiments on the removal of methylene blue (MB) from solutions allowed us to rank the adsorbents used according to the maximum dye removal value achieved as follows: BC1 (94.99%), B (84.61%), BC2 (84.09%), BC3 (83.23%) and BC4 (83.23%). In terms of maximum amoxicillin removal efficiency, the ranking is as follows: BC1 (55.49%), BC3 (23.51%), BC2 (18.13%), B (13.50%) and BC4 (5.98%). The maximum efficiency of diclofenac removal was demonstrated by adsorbents BC1 (98.71), BC3 (87.08%), BC4 (74.20%), B (36.70%) and BC2 (30.40%). The most effective removal of metals Zn, Pb and Cd from the solution was demonstrated by BC1 and BC3 composites. The final concentration of the tested metals after sorption using these composites was less than 1% of the initial concentration. The highest increase in biomass on prepared substrates was recorded for the BC5 composite. It was higher by 90% and 54% (for doses of 30 g and 15 g, respectively) in relation to the biomass growth in the soil without additives. The BC1 composite can be used in pollutant sorption processes. However, BC5 has great potential as a soil additive in crop yield and plant growth.
Failure Analysis for Overall Overturning of Concrete Single-Column Pier Bridges Induced by Temperature and Overloaded Vehicles
Authors: Wang Yelu , Zhou Yongjun , Xue Yuxin , Yao Changwei , Wang Kailong , Luo Xuchang
Published: May 2024

Several overloaded-induced overturning incidents of girder bridges with single-column piers have occurred in recent years, resulting in significant casualties and economic losses. Temperature, in addition to overloading, may also play a role in exacerbating bridge overturning. To investigate the association between temperature and bridge overturning, an explicit finite element model (EFEM) of a three-span concrete curved continuous bridge considering nonlinearities was developed to simulate overall collapse. The effects of uniform and gradient temperatures on the overall overturning stability of curved and straight bridges were evaluated based on the EFEMs. Furthermore, the temperature–bridge coupling model and temperature–vehicle–bridge coupling model were utilized to examine how gradient temperature influences bridge overturning. The results show that the overall overturning collapse of a bridge follows four stages: stabilization, transition, risk and overturning. Variations in uniform temperature from −30 °C to 60 °C had a negligible effect on the ultimate vehicle weight for bridge overturning, with a variation of less than 1%. As the gradient temperature ranged from −30 °C to 60 °C, curved bridges show less than a 2% variation in ultimate vehicle weights, compared to a range of −6.1% to 11.7% for straight bridges. The torsion caused by positive gradient temperature in curved bridges can exacerbate bridge overturning, while negative gradient temperature in straight bridges can lead the girder to ‘upward warping’, facilitating girder separation from bearings. Monitoring the girder rotation angle and vertical reaction force of bearings can serve as important indicators for comparing the stability of bridges.
Sufficiency Conditions for a Class of Convex Functions Connected with Tangent Functions Associated with the Combination of Babalola Operators and Binomial Series
Authors: El-Deeb Sheza M. , Cotîrlă Luminita-Ioana
Published: May 2024

In this paper, we create a new subclass of convex functions given with tangent functions applying the combination of Babalola operators and Binomial series. Moreover, we obtain several important geometric results, including sharp coefficient bounds, sharp Fekete–Szego inequality, Kruskal inequality, and growth and distortion estimates. Furthermore, for functions with logarithmic coefficients, we compute sharp Fekete–Szego inequality and sharp coefficient bounds.
Attribute Sampling Plan for Submitted Lots Based on Prior Information and Bayesian Approach
Authors: Zhao Jing , Zhang Fengyun , Zhang Xuan , Hu Yuping , Ding Wenxing
Published: May 2024

An acceptance sampling plan is a method used to make a decision about acceptance or rejection of a product based on adherence to a standard. Meanwhile, prior information, such as the process capability index (PCI), has been applied in different manufacturing industries to improve the quality of manufacturing processes and the quality inspection of products. In this paper, an attribute sampling plan is developed for submitted lots based on prior information and Bayesian approach. The new attribute sampling plans adjust sample sizes to prior information based on the status of the inspection target. To be specific, the sampling plans in this paper are indexed by the parameter trust with levels of low, medium, and high, where increasing trust level reduces sample size or risk. PCIs are an important basis for the choice of the trust level. In addition, multiple comparisons have been performed, including producer’s risk and consumer’s risk under different prior information parameters and different sample sizes.
Improved Snake Optimizer Using Sobol Sequential Nonlinear Factors and Different Learning Strategies and Its Applications
Authors: Zheng Wenda , Ai Yibo , Zhang Weidong
Published: May 2024

The Snake Optimizer (SO) is an advanced metaheuristic algorithm for solving complicated real-world optimization problems. However, despite its advantages, the SO faces certain challenges, such as susceptibility to local optima and suboptimal convergence performance in cases involving discretized, high-dimensional, and multi-constraint problems. To address these problems, this paper presents an improved version of the SO, known as the Snake Optimizer using Sobol sequential nonlinear factors and different learning strategies (SNDSO). Firstly, using Sobol sequences to generate better distributed initial populations helps to locate the global optimum solution faster. Secondly, the use of nonlinear factors based on the inverse tangent function to control the exploration and exploitation phases effectively improves the exploitation capability of the algorithm. Finally, introducing learning strategies improves the population diversity and reduces the probability of the algorithm falling into the local optimum trap. The effectiveness of the proposed SNDSO in solving discretized, high-dimensional, and multi-constraint problems is validated through a series of experiments. The performance of the SNDSO in tackling high-dimensional numerical optimization problems is first confirmed by using the Congress on Evolutionary Computation (CEC) 2015 and CEC2017 test sets. Then, twelve feature selection problems are used to evaluate the effectiveness of the SNDSO in discretized scenarios. Finally, five real-world technical multi-constraint optimization problems are employed to evaluate the performance of the SNDSO in high-dimensional and multi-constraint domains. The experiments show that the SNDSO effectively overcomes the challenges of discretization, high dimensionality, and multi-constraint problems and outperforms superior algorithms.
Transition-Metal-Catalyzed Transformations for the Synthesis of Marine Drugs
Authors: Parte Lucía G. , Fernández Sergio , Sandonís Eva , Guerra Javier , López Enol
Published: May 2024

Transition metal catalysis has contributed to the discovery of novel methodologies and the preparation of natural products, as well as new chances to increase the chemical space in drug discovery programs. In the case of marine drugs, this strategy has been used to achieve selective, sustainable and efficient transformations, which cannot be obtained otherwise. In this perspective, we aim to showcase how a variety of transition metals have provided fruitful couplings in a wide variety of marine drug-like scaffolds over the past few years, by accelerating the production of these valuable molecules.
Integration of Full-Size Graywater Membrane-Aerated Biological Reactor with Reverse Osmosis System for Space-Based Wastewater Treatment
Authors: Hooshyari Ghaem , Bose Arpita , Jackson W. Andrew
Published: May 2024

To date, life support systems on the International Space Center (ISS) or those planned for upcoming moon/Mars missions have not included biological reactors for wastewater treatment, despite their ubiquitous use for the treatment of terrestrial wastewaters. However, the new focus on partial gravity habitats reduces the required complexity of treatment systems compared with those operating in micro-gravity, and the likely addition of large-volume wastewaters with surfactant loads (e.g., laundry and shower) makes the current ISS wastewater treatment system inappropriate due to the foaming potential from surfactants, increased consumable requirements due to the use of non-regenerative systems (e.g., mixed adsorbent beds), the complexity of the system, and sensitivity to failures from precipitation and/or biological fouling. Hybrid systems that combine simple biological reactors with desalination (e.g., Reverse Osmosis (RO)) could reduce system and consumable mass and complexity. Our objective was to evaluate a system composed of a membrane-aerated bioreactor (MABR) coupled to a low-pressure commercial RO system to process partial gravity habitat wastewater. The MABR was able to serve as the only wastewater collection tank (variable volume), receiving all wastewaters as they were produced. The MABR treated more than 20,750 L of graywater and was able to remove more than 90% of dissolved organic carbon (DOC), producing an effluent with DOC < 14 mg/L and BOD < 12 mg/L and oxidizing >90% of the ammoniacal nitrogen into NOx−. A single RO membrane (260 g) was able to process >3000 L of MABR effluent and produced a RO permeate with DOC < 5 mg/L, TN < 2 mg/L, and TDS < 10 mg/L, which would essentially meet ISS potable water standards after disinfection. The system has an un-optimized mass and volume of 128.5 kg. Consumables include oxygen (~4 g/crew-day), RO membranes, and a prefilter (1.7 g/crew-day). For a one-year mission with four crew, the total system + consumable mass are ~141 kg, which would produce ~15,150 kg of treated water, resulting in a pay-back period of 13.4 days (3.35 days for a crew of four). Given that the MABR in this study operated for 500 days, while in previous studies, similar systems operated for more than 3 years, the total system costs would be exceedingly low. These results highlight the potential application of hybrid treatment systems for space habitats, which may also have a direct application to terrestrial applications where source-separated systems are employed.
Multimodal Mass Spectrometry Imaging of an Osteosarcoma Multicellular Tumour Spheroid Model to Investigate Drug-Induced Response
Authors: Pearce Sophie M. , Cross Neil A. , Smith David P. , Clench Malcolm R. , Flint Lucy E. , Hamm Gregory , Goodwin Richard , Langridge James I. , Claude Emmanuelle , Cole Laura M.
Published: May 2024

A multimodal mass spectrometry imaging (MSI) approach was used to investigate the chemotherapy drug-induced response of a Multicellular Tumour Spheroid (MCTS) 3D cell culture model of osteosarcoma (OS). The work addresses the critical demand for enhanced translatable early drug discovery approaches by demonstrating a robust spatially resolved molecular distribution analysis in tumour models following chemotherapeutic intervention. Advanced high-resolution techniques were employed, including desorption electrospray ionisation (DESI) mass spectrometry imaging (MSI), to assess the interplay between metabolic and cellular pathways in response to chemotherapeutic intervention. Endogenous metabolite distributions of the human OS tumour models were complemented with subcellularly resolved protein localisation by the detection of metal-tagged antibodies using Imaging Mass Cytometry (IMC). The first application of matrix-assisted laser desorption ionization–immunohistochemistry (MALDI-IHC) of 3D cell culture models is reported here. Protein localisation and expression following an acute dosage of the chemotherapy drug doxorubicin demonstrated novel indications for mechanisms of region-specific tumour survival and cell-cycle-specific drug-induced responses. Previously unknown doxorubicin-induced metabolite upregulation was revealed by DESI-MSI of MCTSs, which may be used to inform mechanisms of chemotherapeutic resistance. The demonstration of specific tumour survival mechanisms that are characteristic of those reported for in vivo tumours has underscored the increasing value of this approach as a tool to investigate drug resistance.
Metabolomic Profiling and In Vivo Antiepileptic Effect of Zygophyllum album Aerial Parts and Roots Crude Extracts against Pentylenetetrazole-Induced Kindling in Mice
Authors: Abdel-Hamed Asmaa R. , Wahba Alaa S. , Khodeer Dina M. , Abdel-Kader Maged S. , Badr Jihan M. , Mahgoub Sebaey , Hal Dina M.
Published: May 2024

The chemical profiles of both Zygophyllum album (Z. album) aerial parts and roots extracts were evaluated with LC-ESI-TOF-MS/MS analysis. Twenty-four compounds were detected. Among them, some are detected in both the aerial parts and the roots extracts, and others were detected in the aerial parts only. The detected compounds were mainly flavonoids, phenolic compounds, triterpenes and other miscellaneous compounds. Such compounds contribute to the diverse pharmacological activities elicited by the Z. album species. This study aimed to elucidate the antiepileptic effect of Z. album aerial parts and roots crude extracts against pentylenetetrazole (PTZ)-induced kindling in mice. Male albino mice were divided into four groups, eight animals each. All groups, except the control group, were kindled with PTZ (35 mg/kg i.p.), once every alternate day for a total of 15 injections. One group was left untreated (PTZ group). The remaining two groups were treated prior to PTZ injection with either Z. album aerial parts or roots crude extract (400 mg/kg, orally). Pretreatment with either extract significantly reduced the seizure scores, partially reversed the histological changes in the cerebral cortex and exerted antioxidant/anti-inflammatory efficacy evinced by elevated hippocampal total antioxidant capacity and SOD and catalase activities, parallel to the decrement in MDA content, iNOS activity and the TXNIB/NLRP3 axis with a subsequent decrease in caspase 1 activation and a release of IL-1β and IL-18. Moreover, both Z. album extracts suppressed neuronal apoptosis via upregulating Bcl-2 expression and downregulating that of Bax, indicating their neuroprotective and antiepileptic potential. Importantly, the aerial parts extract elicited much more antiepileptic potential than the roots extract did.
Unveiling Fungi Armor: Preliminary Study on Fortifying Pisum sativum L. Seeds against Drought with Schizophyllum commune Fries 1815 Polysaccharide Fractions
Authors: Mišković Jovana , Tamindžić Gordana , Rašeta Milena , Ignjatov Maja , Krsmanović Nenad , Gojgić-Cvijović Gordana , Karaman Maja
Published: May 2024

Amidst worsening climate change, drought stress imperils global agriculture, jeopardizing crop yields and food security, thereby necessitating the urgent exploration of sustainable methods like biopriming for the harnessing of beneficial microorganisms to bolster plant resilience. Recent research has revealed diverse biological compounds with versatile applications produced by Schizophyllum commune, rendering this fungus as a promising contender for biopriming applications. For the first time, this study aimed to investigate the potential of S. commune exo- (EPSH) and intra-polysaccharides (IPSH) isolated from two strains—Italian (ITA) and Serbian (SRB)—under submerged cultivation to enhance the resilience of Pisum sativum L. seeds through the biopriming technique. Testing of the seed quality for the bioprimed, hydroprimed, and unprimed seeds was conducted using a germination test, under optimal and drought conditions, while characterization of the PSHs included FTIR analysis, microanalysis, and determination of total protein content (TPC). The FTIR spectra of EPSH and IPSH were very similar but revealed the impurities, while microanalysis and TPC confirmed a different presence of proteins in the isolated PSHs. In optimal conditions, the IPSH SRB increased germination energy by 5.50% compared to the control; however, the highest percentage of germination (94.70%) was shown after biopriming with the PSH isolated from the ITA strain. Additionally, all assessed treatments resulted in a boost in seedling growth and biomass accumulation, where the ITA strain demonstrated greater effectiveness in optimal conditions, while the SRB strain showed superiority in drought conditions. The drought tolerance indices increased significantly in response to all examined treatments during the drought, with EPSH ITA (23.00%) and EPSH SRB (24.00%) demonstrating the greatest effects. Results of this preliminary study demonstrate the positive effect of isolated PSH, indicating their potential as biopriming agents and offering insights into novel strategies for agricultural resilience.
Maize/Soybean Intercropping with Straw Return Increases Crop Yield by Influencing the Biological Characteristics of Soil
Authors: Cui Jingjing , Li Shuang , Baoyin Bate , Feng Yudi , Guo Danyang , Zhang Liqiang , Gu Yan
Published: May 2024

With mounting demand for high-quality agricultural products and the relentless exploitation of arable land resources, finding sustainable ways to safely cultivate food crops is becoming ever more important. Here, we investigated the effects of the integrated cropping technique “straw return + intercropping” on the soil aggregates as well as the microbial biomass carbon (MBC) content, enzyme activities and microbial diversity in soils of maize and soybean crops. Our results show that in comparison to straw removal and monoculture, straw return and intercropping increase the rhizosphere’s MBC content (59.10%) of soil, along with urease (47.82%), sucrase (57.14%), catalase (16.14%) and acid phosphatase (40.66%) activities as well as the microbial diversity under maize and soybean. Under the same straw treatment, the yield of maize when intercropped surpassed that when grown in monoculture, with the land equivalent ratio of the intercropping treatment under straw return being highest. Overall, the intercropping of maize and soybean is beneficial for the healthy development of sustainable agriculture in the black soil region of northeast China, especially when combined with straw return to fields.
Changes in the Gastrointestinal Microbiota Induced by Proton Pump Inhibitors—A Review of Findings from Experimental Trials
Authors: Fossmark Reidar , Olaisen Maya
Published: May 2024

The use of proton pump inhibitors (PPIs) has increased considerably in many Western countries, and there is concern that numerous conditions and diseases associated with PPI use may be adverse events. The main function of gastric acid is to defend the organism against orally ingested microorganisms, and there is also concern that alterations not only in the gastric microbiome but also the downstream intestinal microbiome may increase the risk of disease or alter the course of preexisting disease. The current study is a systematic review of the available evidence from experimental trials investigating the effects of PPIs on the gastrointestinal microbiota by next-generation sequencing. Thirteen studies were identified. The effects of PPIs were seen on alterations in diversity and richness in some of the studies, while a larger proportion of the studies detected alterations at various taxonomic levels. The general finding was that PPI use caused an increase in bacteria normally found in the oral microbiota in both the upper and lower GI tract. The most consistent taxonomic alterations seemed to be increases in oral flora along the axis Streptococcaceae and Streptococcus at genus level and various Streptococcus spp., as well as Veillonellaceae, Veillonella and Haemophilus.
Contribution of pks+ Escherichia coli (E. coli) to Colon Carcinogenesis
Authors: Sadeghi Mohammad , Mestivier Denis , Sobhani Iradj
Published: May 2024

Colorectal cancer (CRC) stands as a significant global health concern, ranking second in mortality and third in frequency among cancers worldwide. While only a small fraction of CRC cases can be attributed to inherited genetic mutations, the majority arise sporadically due to somatic mutations. Emerging evidence reveals gut microbiota dysbiosis to be a contributing factor, wherein polyketide synthase-positive Escherichia coli (pks+ E. coli) plays a pivotal role in CRC pathogenesis. pks+ bacteria produce colibactin, a genotoxic protein that causes deleterious effects on DNA within host colonocytes. In this review, we examine the role of the gut microbiota in colon carcinogenesis, elucidating how colibactin-producer bacteria induce DNA damage, promote genomic instability, disrupt the gut epithelial barrier, induce mucosal inflammation, modulate host immune responses, and influence cell cycle dynamics. Collectively, these actions foster a microenvironment conducive to tumor initiation and progression. Understanding the mechanisms underlying pks+ bacteria-mediated CRC development may pave the way for mass screening, early detection of tumors, and therapeutic strategies such as microbiota modulation, bacteria-targeted therapy, checkpoint inhibition of colibactin production and immunomodulatory pathways.
Dysfunction of Complementarity Determining Region 1 Encoded by T Cell Receptor Beta Variable Gene Is Potentially Associated with African Swine Fever Virus Infection in Pigs
Authors: Li Jiayu , Xing Huiyan , Liu Kai , Fan Ninglin , Xu Kaixiang , Zhao Heng , Jiao Deling , Wei Taiyun , Cheng Wenjie , Guo Jianxiong , Zhang Xiong , Zhu Feiyan , Bu Zhigao , Zhao Dongming , Wang Wen , Wei Hong-Jiang
Published: May 2024

The beta T-cell receptor (TRB) expressed by beta T cells is essential for foreign antigen recognition. The TRB locus contains a TRBV family that encodes three complementarity determining regions (CDRs). CDR1 is associated with antigen recognition and interactions with MHC molecules. In contrast to domestic pigs, African suids lack a 284-bp segment spanning exons 1 and 2 of the TRBV27 gene that contains a sequence encoding CDR1. In this study, we used the African swine fever virus (ASFV) as an example to investigate the effect of deleting the TRBV27-encoded CDR1 on the resistance of domestic pigs to exotic pathogens. We first successfully generated TRBV27-edited fibroblasts with disruption of the CDR1 sequence using CRISPR/Cas9 technology and used them as donor cells to generate gene-edited pigs via somatic cell nuclear transfer. The TRBV-edited and wild-type pigs were selected for synchronous ASFV infection. White blood cells were significantly reduced in the genetically modified pigs before ASFV infection. The genetically modified and wild-type pigs were susceptible to ASFV and exhibited typical fevers (>40 °C). However, the TRBV27-edited pigs had a higher viral load than the wild-type pigs. Consistent with this, the gene-edited pigs showed more clinical signs than the wild-type pigs. In addition, both groups of pigs died within 10 days and showed similar severe lesions in organs and tissues. Future studies using lower virulence ASFV isolates are needed to determine the relationship between the TRBV27 gene and ASFV infection in pigs over a relatively long period.
Timing and Tectonic Implications of the Development of the Orosirian Qianlishan Ductile Shear Zones in the Khondalite Belt, North China Craton
Authors: Qiao Hengzhong , Liu Miao , Dai Chencheng
Published: May 2024

Orogen-parallel ductile shear zones are conspicuous structures in the Khondalite Belt, but the timing of shearing remains poorly understood. Here, we present field-based structural and zircon U-Pb geochronological studies on the newly discovered Qianlishan ductile shear zones (QDSZ) in the Khondalite Belt. Our results show that the nearly E-W-trending QDSZ are characterized by steeply S(SW)-dipping mylonitic foliations and mainly display a top-to-N(NE) sense of shearing. Two pre-kinematic intrusions yielded zircon crystallization ages of 2055 ± 17 Ma and 1947 ± 9 Ma, providing the maximum age limit for the QDSZ. Additionally, zircon overgrowth rims from three high-temperature mylonites gave metamorphic ages of 1902 ± 8 Ma, 1902 ± 26 Ma and 1884 ± 12 Ma, interpreted to record the timing of development of the QDSZ. Integrated with previous studies, we propose that the Qianlishan Complex suffered three phases of Orosirian deformation (D1–D3), of which the D3 deformation led to the development of the QDSZ. Deformation events D1, D2 and D3 are considered to have occurred at ca. 1.97–1.93 Ga, 1.93–1.90 Ga and 1.90–1.82 Ga, respectively. These events document that the Khondalite Belt underwent a protracted (>100 Myr) orogenic history in response to the collision between the Yinshan and Ordos blocks.