bluuebunny/crossref_metadata_2025 huggingface dataset:
Adropin and Irisin Deficiencies Are Associated With Presence of Diagonal Earlobe Crease in CAD Patients
Authors: Wei Na , Zhang Ronghuai , Zhu Zhanfang , Li Rui , Yu Qi , Wang Qingyu , Xu Cuixiang , Ma Meijuan , Mu Shengzhi , Liu Fuqiang , Wang Junkui
Published: October 2021

Background and Aims: Diagonal earlobe crease (ELC) has been considered a potential cutaneous marker of atherosclerosis. However, the potential mechanism by which ELC and atherosclerosis are linked has not been adequately defined. Roles of adropin and irisin, novel biomarkers of endothelial function, in ELC have not been well-studied. This study aimed to test whether individuals with ELC are deficient in adropin and irisin, a characteristic that would likely promote endothelial dysfunction and provide a plausible common pathological basis for atherosclerosis and ELC.

Methods: Patients diagnosed with coronary artery disease (CAD) with (n = 45) and without (n = 45) ELC were consecutively enrolled in the study. The ages of the patients enrolled ranged from 40–70 years. Other patients (n = 45) without ELC or CAD were recruited as the control group. All patients underwent coronary angiography. Serum adropin and irisin concentrations were assessed via enzyme-linked immunosorbent assay.

Results: Circulating levels of irisin in the ELC group were significantly lower than those in the non-ELC group, and were highest in the control group. Serum adropin levels of the ELC group were significantly lower than those of the non-ELC group (P < 0.001). Interestingly, although the serum adropin level of the control group was greater than that of the non-ELC group, the difference failed to achieve statistical significance. In subgroup analysis of CAD and ELC, both serum adropin and irisin levels of the CAD and ELC groups were lower than those of the control group (P < 0.001). Receiver-operating characteristic curve analysis revealed that adropin and irisin have similar prognostic power for CAD and ELC.

Conclusions: Low adropin and irisin were significantly associated with CAD and ELC. The deficiencies in adropin and irisin may be a common cause of both atherosclerosis and ELC, which explains why patients with ELC are prone to CAD.
Fibroblast Growth Factor 21 Protects Against Atrial Remodeling via Reducing Oxidative Stress
Authors: Chen Miao , Zhong Jiawei , Wang Zhen , Xu Hongfei , Chen Heng , Sun Xingang , Lu Yunlong , Chen Lu , Xie Xudong , Zheng Liangrong
Published: October 2021

Aim: The structural and electrical changes in the atrium, also known as atrial remodeling, are the main characteristics of atrial fibrillation (AF). Fibroblast growth factor 21 (Fgf21) is an important endocrine factor, which has been shown to play an important role in cardiovascular diseases. However, the effects of Fgf21 on atrial remodeling have not been addressed yet. The purpose of the present study is to evaluate the effects of Fgf21 on atrial remodeling.

Methods and Results: Adult mice were treated with Ang II, and randomly administrated with or without Fgf21 for 2 weeks. The susceptibility to AF was assessed by electrical stimulation and optical mapping techniques. Here, we found that Fgf21 administration attenuated the inducibility of atrial fibrillation/atrial tachycardia (AF/AT), improved epicardial conduction velocity in the mice atria. Mechanistically, Fgf21 protected against atrial fibrosis and reduced oxidative stress of the atria. Consistently, in vitro study also demonstrated that Fgf21 blocked the upregulation of collagen by Tgf-β in fibroblasts and attenuated tachypacing-induced oxidative stress including reactive oxygen species (ROS), Tgf-β, and ox-CaMKII in atrial myocytes. We further found that Fgf21 attenuated oxidative stress by inducing antioxidant genes, such as SOD2 and UCP3. Fgf21 also improved tachypacing-induced myofibril degradation, downregulation of L-type calcium channel, and upregulation of p-RyR2, which implicated protective effects of Fgf21 on structural and electrical remodeling in the atria. Moreover, Nrf2 was identified as a downstream of Fgf21 and partly mediated Fgf21-induced antioxidant gene expression in atrial myocytes.

Conclusion: Fgf21 administration effectively suppressed atrial remodeling by reducing oxidative stress, which provides a novel therapeutic insight for AF.
Development and Validation of Risk Prediction Model for New-Onset Diabetes After Percutaneous Coronary Intervention (NODAP): A Study Protocol for a Retrospective, Multicenter Analysis
Authors: Li Yiwen , Cui Jing , Liu Yanfei , Chen Keji , Huang Luqi , Liu Yue
Published: October 2021

Background: Type 2 Diabetes mellitus (T2DM) is a major risk factor for cardiovascular diseases and increase mortality. Clinical outcomes of patients after percutaneous coronary intervention (PCI) were worse in T2DM patients than those without T2DM. New-onset diabetes after PCI (NODAP) is often observed during long-term follow-up and this further aggravates cardiovascular diseases. Several studies had focused on patients after PCI with known T2DM. Previous studies showed that impaired glucose tolerance and aging are risk factors that promote NODAP. Considering the unique characteristics of patients after PCI, we will further study relevant risk factors. We sought to investigate the potential predictors of acute coronary syndrome patients with NODAP by a multicenter retrospective cohort study.

Methods: This is a multicenter retrospective cohort study including patients after PCI. Clinical medical records of these patients were collected from four hospitals in different areas in China, from 2010 to 2021. Patients' demographic information, medical history, diagnostic testing, PCI-related information, medication situation will be summarized using descriptive statistics, and correlation analysis was performed on the development of new-onset diabetes. Variation will be described and evaluated using χ2 test or Kreskas-Wallis test. The prediction model will be verified by a validation set.

Discussion: A novel diabetes prediction model for patients after PCI is established, and this study can achieve advanced intervention for the occurrence of NODAP. Owing to its retrospective nature, this study has some limitations, but it will be further studied through supplement data collection or prospective study. The study has been registered for clinical trials by the Chinese Clinical Trial Registry (ChiCTR2100047241).
Integrated Metagenomics and Metabolomics to Reveal the Effects of Policosanol on Modulating the Gut Microbiota and Lipid Metabolism in Hyperlipidemic C57BL/6 Mice
Authors: Zhai Zhenya , Liu Jianping , Niu Kai-Min , Lin Chong , Tu Yue , Liu Yichun , Cai Lichuang , Liu Huiping , Ouyang Kexian
Published: October 2021

The aim of the study was to investigate the regulatory effects of policosanol on hyperlipidemia, gut microbiota and metabolic status in a C57BL/6 mouse model. A total of 35 C57BL/6 mice were assigned to 3 groups, chow (n=12), high fat diet (HFD, n=12) and HFD+policosanol (n=11), then treated for 18 weeks. Policosanol supplementation significantly reduced serum triglycerides and total cholesterol, as well as the weight of brown adipose tissue (BAT) (p<0.05), without affecting body weight in HFD-fed mice (p>0.05). Combined 16S rRNA gene sequencing and untargeted metabolomic analysis demonstrated that policosanol had regulatory effects on gut microbiota and serum metabolism in mice. In obese mice, policosanol increased the proportion of Bacteroides, decreased the proportion of Firmicutes, and increased the ratio of Bacteroides to Firmicutes (p<0.05). Policosanol promoted lipolysis and thermogenesis process, including tricarboxylic acid (TCA) cycle and pyruvate cycle, correlated with the increasing level of Bacteroides, Parasutterella, and decreasing level of Lactobacillus and Candidatus_Saccharimonas. Moreover, policosanol decreased fatty acid synthase (FAS) in the iWAT of obese mice. Policosanol also increased peroxisome proliferators-activated receptor-γ (PPARγ), uncoupling Protein-1 (UCP-1), peroxisome proliferator-activated receptor gamma coactivator-1α (PGC-1α) and PR domain containing 16 (PRDM16) in brown adipose tissue (BAT) obese mice (p<0.05). This study presents the new insight that policosanol may inhibit the synthesis of fatty acids, and promote lipolysis, thermogenesis related gene expression and regulate gut microbiota constituents, which provides potential for policosanol as an antihyperlipidemia functional food additive and provide new evidence for whole grain food to replace refined food.
Transforming Growth Factor Beta 1 Alters Glucose Uptake but Not Insulin Signalling in Human Primary Myotubes From Women With and Without Polycystic Ovary Syndrome
Authors: McIlvenna Luke C. , Patten Rhiannon K. , McAinch Andrew J. , Rodgers Raymond J. , Stepto Nigel K. , Moreno-Asso Alba
Published: October 2021

Women with polycystic ovary syndrome (PCOS), commonly have profound skeletal muscle insulin resistance which can worsen other clinical features. The heterogeneity of the condition has made it challenging to identify the precise mechanisms that cause this insulin resistance. A possible explanation for the underlying insulin resistance may be the dysregulation of Transforming Growth Factor-beta (TGFβ) signalling. TGFβ signalling contributes to the remodelling of reproductive and hepatic tissues in women with PCOS. Given the systemic nature of TGFβ signalling and its role in skeletal muscle homeostasis, it may be possible that these adverse effects extend to other peripheral tissues. We aimed to determine if TGFβ1 could negatively regulate glucose uptake and insulin signalling in skeletal muscle of women with PCOS. We show that both myotubes from women with PCOS and healthy women displayed an increase in glucose uptake, independent of changes in insulin signalling, following short term (16 hr) TGFβ1 treatment. This increase occurred despite pro-fibrotic signalling increasing via SMAD3 and connective tissue growth factor in both groups following treatment with TGFβ1. Collectively, our findings show that short-term treatment with TGFβ1 does not appear to influence insulin signalling or promote insulin resistance in myotubes. These findings suggest that aberrant TGFβ signalling is unlikely to directly contribute to skeletal muscle insulin resistance in women with PCOS in the short term but does not rule out indirect or longer-term effects.
Overlapping Phenotypes Associated With CYP24A1, SLC34A1, and SLC34A3 Mutations: A Cohort Study of Patients With Hypersensitivity to Vitamin D
Authors: Molin Arnaud , Lemoine Sandrine , Kaufmann Martin , Breton Pierre , Nowoczyn Marie , Ballandonne Céline , Coudray Nadia , Mittre Hervé , Richard Nicolas , Ryckwaert Amélie , Lavillaureix Alinoe , Jones Glenville , Bacchetta Justine , Kottler Marie-Laure
Published: October 2021

Mutations in CYP24A1 (vitamin D 24-hydroxylase) and SLC34A1 (renal phosphate transporter NPT2a) cause autosomal recessive Infantile Hypercalcemia type 1 and 2, illustrating links between vitamin D and phosphate metabolism. Patients may present with hypercalciuria and alternate between chronic phases with normal serum calcium but inappropriately high 1,25-(OH)2D and appropriately low PTH, and acute phases with hypercalcemia with suppressed PTH. Mutations in SLC34A3 and SLC9A3R1 have been associated with phosphate wasting without hypercalcemia. The aims of this study were to evaluate the frequency of mutations in these genes in patients with a medical history suggestive of CYP24A1 mutation to search for a specific pattern. Using next generation sequencing, we screened for mutations in 185 patients with PTH levels < 20 pg/mL, hypercalcemia and/or hypercalciuria, and relatives. Twenty-eight (15%) patients harbored biallelic mutations in CYP24A1 (25) and SLC34A3 (3), mostly associated with renal disease (lithiasis, nephrocalcinosis) (86%). Hypophosphatemia was found in 7 patients with biallelic mutations in CYP24A1 and a normal phosphatemia was reported in 2 patients with biallelic mutations in SLC34A3. Rare variations in SLC34A1 and SLC34A3 were mostly of uncertain significance. Fifteen patients (8%) carried only one heterozygous mutation. Heterozygous relatives carrying SLC34A1 or SLC34A3 variation may present with biochemical changes in mineral metabolism. Two patients’ genotype may suggest digenism (heterozygous variations in different genes). No variation was found in SLC9A3R1. As no specific pattern can be found, patients with medical history suggestive of CYP24A1 mutation should benefit from SLC34A1 and SLC34A3 analysis.
Ghrelin Gene Deletion Alters Pulsatile Growth Hormone Secretion in Adult Female Mice
Authors: Hassouna Rim , Fernandez Gimena , Lebrun Nicolas , Fiquet Oriane , Roelfsema Ferdinand , Labarthe Alexandra , Zizzari Philippe , Tomasetto Catherine , Epelbaum Jacques , Viltart Odile , Chauveau Christophe , Perello Mario , Tolle Virginie
Published: October 2021

Using preproghrelin-deficient mice (Ghrl-/-), we previously observed that preproghrelin modulates pulsatile growth hormone (GH) secretion in post-pubertal male mice. However, the role of ghrelin and its derived peptides in the regulation of growth parameters or feeding in females is unknown. We measured pulsatile GH secretion, growth, metabolic parameters and feeding behavior in adult Ghrl-/- and Ghrl+/+ male and female mice. We also assessed GH release from pituitary explants and hypothalamic growth hormone-releasing hormone (GHRH) expression and immunoreactivity. Body weight and body fat mass, linear growth, spontaneous food intake and food intake following a 48-h fast, GH pituitary contents and GH release from pituitary explants ex vivo, fasting glucose and glucose tolerance were not different among adult Ghrl-/- and Ghrl+/+ male or female mice. In vivo, pulsatile GH secretion was decreased, while approximate entropy, that quantified orderliness of secretion, was increased in adult Ghrl-/- females only, defining more irregular GH pattern. The number of neurons immunoreactive for GHRH visualized in the hypothalamic arcuate nucleus was increased in adult Ghrl-/- females, as compared to Ghrl+/+ females, whereas the expression of GHRH was not different amongst groups. Thus, these results point to sex-specific effects of preproghrelin gene deletion on pulsatile GH secretion, but not feeding, growth or metabolic parameters, in adult mice.
Meta-Analysis Approach to Measure the Effect of Integrated Nutrient Management on Crop Performance, Microbial Activity, and Carbon Stocks in Indian Soils
Authors: Padbhushan Rajeev , Sharma Sheetal , Kumar Upendra , Rana D.S. , Kohli Anshuman , Kaviraj Megha , Parmar Brajendra , Kumar Rajkishore , Annapurna K. , Sinha Abhas Kumar , Gupta Vadakattu V.S.R.
Published: October 2021

Cereal crop production gains under conventional agricultural systems in India have been declining in recent years because of inadequate management practices, creating a considerable concern. These activities were shown to deplete soil organic matter stocks, resulting in a decrease in microbial activity and soil organic carbon (SOC) content. Moreover, even with minimal use of organic sources in cultivated land, soil carbon status deteriorated, particularly in subtropical climates. Integrated nutrient management (INM), a modified farming method, has the potential to effectively utilize organic and inorganic resources, to improve the quality of soils and crops, and making farming more economically viable and sustainable. The aim of this study was to use meta-analysis to quantify the effects of INM on crop production, soil carbon, and microbial activity in Indian soils. During the years 1989–2018, data from various research studies in India, mainly on nutrient management in rice and wheat crops, were collected. Meta-Win 2.1 software was used to analyze the results, and significance was determined atp< 0.05. The results showed that the yield of rice and wheat was 1.4 and 4.9% more in INM than that in 100% NPK (N: nitrogen, P: phosphorous, and K: potassium), and that respective yields were comparatively higher in loamy soils (2.8%) and clayey soils (1.0%). The INM treatment increased SOC and microbial biomass carbon (MBC), resulting in improved overall soil quality. The SOC stock was increased by 23.8% in rice, 15.1% in wheat, 25.3% in loamy soils, and 14.4% in clayey soils in INM over 100% NPK. Microbial quotient (MQ) data showed significant trends between different management systems in both soil types, for example, INM > 100% NPK > No NPK. Due to more soil cracking and reduced aggregate stability in the rice field (greater short-term soil structural changes), the SOC stock loss in rice was higher than that in wheat. The CO2equivalent emissions were 7.9 Mg ha−1higher in no NPK (control) than in 100% NPK, and 16.4 Mg ha−1higher in control than in INM. In other words, INM increased soil carbon sequestration by 2.3 Mg ha−1as compared to using 100% NPK. Overall, the findings of this study show that INM could be a viable farming system mode in India for improving crop production, increasing soil carbon sequestration, and improving microbial activity while remaining economically and environmentally sustainable.
Impact of Urbanization to an Island and the Continent: Species Turnover and Nestedness in Neotropical Bird Assemblages
Authors: Caula Sabina A. , Sanz D'Angelo Virginia
Published: October 2021

Islands are well-known as particular and vulnerable ecosystems with evolutionary histories, environmental characteristics, and original communities different from those of continents. On the contrary, urban environments are recent, artificial, and structurally similar among distant regions. To assess the relative importance of regional and local processes on urban biota, we chose two urban environments, i.e., one on the mainland and another on an island in the same ecoregion. We asked whether the urbanization process affects the avian biodiversity of the ISLAND in the same way as in the continent. We defined an urban gradient with three levels of building density, namely, patches of native vegetation (remnant woodlands in the urban matrix), medium density urbanized areas that maintain vegetation along the streets and gardens, and residential areas with less vegetation cover and higher building density. In each geographical locality, we selected three sites (replicates) for each level of the urban gradient and did bird surveys. We found two times as many species in the urban landscape of the continent (69) as on the island (35), with the analogous richness decrease along the gradient in both regions. Species similarity was higher between urbanized sites of both regions compared with the similarity between woodlands and urbanized sites, showing that urban matrix filters similar species of each pool regionally. Individual species responded to urban structure in different ways. We found 32% of bird species were urban exploiters, 48% urban tolerant, and 20% urban avoiders in both regions. However, some species showed different frequencies of occurrence on the island and the continent. Species turnover contributed more than richness differences to species dissimilarity along the urban gradient on the continent. Contrarily, the nestedness component (i.e., species being a strict subset of the species at a richer site) was higher on the island. We concluded that the negative impact of highly urbanized areas on birds was stronger on the island than on the continent. Our results may help to assess the implications of beta-diversity loss, especially on islands.
Color of Artificial Light at Night Affects Incubation Behavior in the Great Tit, Parus major
Authors: van Dis Natalie E. , Spoelstra Kamiel , Visser Marcel E. , Dominoni Davide M.
Published: October 2021

Artificial light at night (ALAN) has been recognized as a biodiversity threat due to the drastic effects it can have on many organisms. In wild birds, artificial illumination alters many natural behaviors that are important for fitness, including chick provisioning. Although incubation is a key determinant of the early developmental environment, studies into the effects of ALAN on bird incubation behavior are lacking. We measured nest temperature in nest boxes of great tits during the incubation period in two consecutive years. Nest boxes were located in eight previously dark field sites that have been experimentally illuminated since 2012 with white, green, or red light, or were left dark. We tested if light treatment affected mean nest temperature, number of times birds leave the nest (off-bout frequency), and off-bout duration during the incubation period. Subsequently, we investigated if incubation behavior is related to fitness. We found that birds incubating in the white light during a cold, early spring had lower mean nest temperatures at the end of incubation, both during the day and during the night, compared to birds in the green light. Moreover, birds incubating in white light took fewer off-bouts, but off-bouts were on average longer. The opposite was true for birds breeding in the green light. Low incubation temperatures and few but long off-bouts can have severe consequences for developing embryos. In our study, eggs from birds that took on average few off-bouts needed more incubation days to hatch compared to eggs from birds that took many off-bouts. Nevertheless, we found no clear fitness effects of light treatment or incubation behavior on the number of hatchlings or hatchling weight. Our results add to the growing body of literature that shows that effects of ALAN can be subtle, can differ due to the spectral composition of light, and can be year-dependent. These subtle alterations of natural behaviors might not have severe fitness consequences in the short-term. However, in the long term they could add up, negatively affecting parent condition and survival as well as offspring recruitment, especially in urban environments where more environmental pollutants are present.
A Multi-Marker Test for Analyzing Paired Genetic Data in Transplantation
Authors: Arthur Victoria L. , Li Zhengbang , Cao Rui , Oetting William S. , Israni Ajay K. , Jacobson Pamala A. , Ritchie Marylyn D. , Guan Weihua , Chen Jinbo
Published: October 2021

Emerging evidence suggests that donor/recipient matching in non-HLA (human leukocyte antigen) regions of the genome may impact transplant outcomes and recognizing these matching effects may increase the power of transplant genetics studies. Most available matching scores account for either single-nucleotide polymorphism (SNP) matching only or sum these SNP matching scores across multiple gene-coding regions, which makes it challenging to interpret the association findings. We propose a multi-marker Joint Score Test (JST) to jointly test for association between recipient genotype SNP effects and a gene-based matching score with transplant outcomes. This method utilizes Eigen decomposition as a dimension reduction technique to potentially increase statistical power by decreasing the degrees of freedom for the test. In addition, JST allows for the matching effect and the recipient genotype effect to follow different biological mechanisms, which is not the case for other multi-marker methods. Extensive simulation studies show that JST is competitive when compared with existing methods, such as the sequence kernel association test (SKAT), especially under scenarios where associated SNPs are in low linkage disequilibrium with non-associated SNPs or in gene regions containing a large number of SNPs. Applying the method to paired donor/recipient genetic data from kidney transplant studies yields various gene regions that are potentially associated with incidence of acute rejection after transplant.
The Roles of Tissue-Resident Memory T Cells in Lung Diseases
Authors: Yuan Rui , Yu Jiang , Jiao Ziqiao , Li Jinfei , Wu Fang , Yan Rongkai , Huang Xiaojie , Chen Chen
Published: October 2021

The unique environment of the lungs is protected by complex immune interactions. Human lung tissue-resident memory T cells (TRM) have been shown to position at the pathogen entry points and play an essential role in fighting against viral and bacterial pathogens at the frontline through direct mechanisms and also by orchestrating the adaptive immune system through crosstalk. Recent evidence suggests that TRM cells also play a vital part in slowing down carcinogenesis and preventing the spread of solid tumors. Less beneficially, lung TRM cells can promote pathologic inflammation, causing chronic airway inflammatory changes such as asthma and fibrosis. TRM cells from infiltrating recipient T cells may also mediate allograft immunopathology, hence lung damage in patients after lung transplantations. Several therapeutic strategies targeting TRM cells have been developed. This review will summarize recent advances in understanding the establishment and maintenance of TRM cells in the lung, describe their roles in different lung diseases, and discuss how the TRM cells may guide future immunotherapies targeting infectious diseases, cancers and pathologic immune responses.
Efficacy, Immunogenicity and Safety of COVID-19 Vaccines: A Systematic Review and Meta-Analysis
Authors: Sharif Nadim , Alzahrani Khalid J. , Ahmed Shamsun Nahar , Dey Shuvra Kanti
Published: October 2021

There is a significant research gap in meta-analysis on the efficacy and safety of coronavirus disease 2019 (COVID-19) vaccines. This study analyzed the efficacy of COVID-19 vaccines. Published phase I, phase II, and phase III trials analyzing safety and immunogenicity and phase III randomized clinical trials evaluating the efficacy of COVID-19 vaccines were included. We searched MEDLINE, Scopus, and The Lancet for published articles evaluating the relative reduction in COVID-19 risk after vaccination. Selected literatures were published between December 15, 2019 and May 15, 2021 on the safety, efficacy, and immunogenicity of COVID-19 vaccines. This meta-analysis included studies that confirmed cases of COVID-19 using reverse transcriptase polymerase chain reaction. This study detected 8,926 eligible research articles published on COVID-19 vaccines. Of these, 25 studies fulfilled the inclusion criteria. Among the selected articles, 19 randomized clinical trials, 2 non-randomized clinical trials, and 3 observational studies were analyzed. Seven (28%) studies were included in the meta-analysis. The efficacy of the adenovirus vector vaccine was 73% (95% CI = 69–77) and that of the messenger RNA (mRNA) vaccine was 85% (95% CI = 82–88) in participants aged ≥18 years. There are no reports of clinical trials in participants aged under 16 years. The production of neutralizing antibodies against receptor-binding domains (RBDs) of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) in >90% of the vaccinated samples was reported within 0–30 days of the first or the second dose of the vaccine. Pain at the injection site was the most common local symptom in people receiving mRNA vaccines (29%–85% of participants). Fever (0.2%–95%) was the most prevalent in people receiving adenovirus vector vaccines, and fatigue (8.4%–55%) was the most common side effect in people receiving the mRNA vaccines. Studies suggest that mRNA vaccines and adenovirus vector vaccines can provide moderate to high protection against COVID-19 infection in people over 18 years. Evidence of the long-term protection of the vaccines in people aged under 16 years against the multiple variants of COVID-19 are limited. This study will provide an integrated evaluation on the efficacy, safety, and immunogenicity of the COVID-19 vaccines.
New Insights on CD8+ T Cells in Inflammatory Bowel Disease and Therapeutic Approaches
Authors: Casalegno Garduño Rosaely , Däbritz Jan
Published: October 2021

CD8+ T cells are involved in the pathogenesis of inflammatory bowel disease (IBD), a complex multifactorial chronic disease. Here, we present an overview of the current research with the controversial findings of CD8+ T cell subsets and discuss some possible perspectives on their therapeutic value in IBD. Studies on the role of CD8+ T cells in IBD have contradictory outcomes, which might be related to the heterogeneity of the cells. Recent data suggest that cytotoxic CD8+ T cells (Tc1) and interleukin (IL) 17-producing CD8+ (Tc17) cells contribute to the pathogenesis of IBD. Moreover, subsets of regulatory CD8+ T cells are abundant at sites of inflammation and can exhibit pro-inflammatory features. Some subsets of tissue resident memory CD8+ T cells (Trm) might be immunosuppressant, whereas others might be pro-inflammatory. Lastly, exhausted T cells might indicate a positive outcome for patients. The function and plasticity of different subsets of CD8+ T cells in health and IBD remain to be further investigated in a challenging field due to the limited availability of mucosal samples and adequate controls.
A Comparison of Three Data-Poor Stock Assessment Methods for the Pink Spiny Lobster Fishery in Mauritania
Authors: Meissa Beyah , Dia Mamadou , Baye Braham C. , Bouzouma Moustapha , Beibou Ely , Roa-Ureta Rubén H.
Published: October 2021

Several data-poor stock assessment methods have recently been proposed and applied to data-poor fisheries around the world. The Mauritanian pink spiny lobster fishery has a long history of boom and bust dynamics, with large landings, stock collapse, and years-long fishery closures, all happening several times. In this study, we have used catch, fishing efforts, and length-frequency data (LFD) obtained from the fishery in its most recent period of activity, 2015–2019, and historical annual catch records starting in 2006 to fit three data-poor stock assessment methods. These were the length-based Bayesian (LBB) method, which uses LFD exclusively, the Catch-only MSY (CMSY) method, using annual catch data and assumptions about stock resilience, and generalised depletion models in the R package CatDyn combined with Pella-Tomlinson biomass dynamics in a hierarchical inference framework. All three methods presented the stock as overfished. The LBB method produced results that were very pessimistic about stock status but whose reliability was affected by non-constant recruitment. The CMSY method and the hierarchical combination of depletion and Pella-Tomlinson biomass dynamics produced more comparable results, such as similar sustainable harvest rates, but both were affected by large statistical uncertainty. Pella-Tomlinson dynamics in particular demonstrated stock experiencing wide fluctuations in abundance. In spite of uncertain estimates, a clear understanding of the status of the stock as overfished and in need of a biomass rebuilding program emerged as management-useful guidance to steer exploitation of this economically significant resource into sustainability.
Callogorgia spp. and Their Brittle Stars: Recording Unknown Relationships in the Pacific Ocean and the Caribbean Sea
Authors: Mejía-Quintero Katherine , Borrero-Pérez Giomar H. , Montoya-Cadavid Erika
Published: October 2021

The habitat formed by the Callogorgia species, with their abundance and colony sizes, provides an important refuge for a variety of brittle stars which are recognized as the epibionts of octocorals in both shallow and deep environments. In such a relationship, ophiurans benefit directly from being elevated because they facilitate their feeding by suspension, while octocorals do not seem to benefit or be harmed. During three different expeditions developed in the Colombian Pacific from 2012 to 2013 and in the Caribbean Sea during 1998 and 2012 by the INVEMAR - Marine and Coastal Research institute, different samplings were carried out on soft bottoms through trawls with an epibenthic net. For the Pacific Ocean, 33 fragments of the octocoral Callogorgia cf. galapagensis Cairns, 2018 with 178 specimens of the ophiuroid Astrodia cf. excavata (Lütken and Mortensen, 1899) were found in two stations at depths 530 and 668 m. Considering the abundance of A. cf excavata, other biological characters such as size, presence of mature gonads, and evidence of arm regeneration were also detailed. In contrast, in the Caribbean Sea, Callogorgia gracilis (Milne Edwards and Haime, 1857) was found with ophiuroids belonging to the genera Asteroschema and Ophiomitra. The octocoral Callogorgia americana (Cairns and Bayer, 2002) was also found, but without associated brittle stars. These findings constituted the first specific association reported in the Eastern Tropical Pacific, and new relationships for the Caribbean Sea. This further reflected a possible specific association between the Callogorgia and Astrodia species that needed to be further explored. Thus, the Callogorgia species and the brittle star A. cf. excavata represented new records for the Colombian Pacific Ocean and the southern Caribbean Sea.
Red Tide Events and Seasonal Variations in the Partial Pressure of CO2 and Related Parameters in Shellfish-Farming Bays, Southeastern Coast of Korea
Authors: Shim JeongHee , Ye Mi-Ju , Lim Jae-Hyun , Kwon Jung-No , Kim Jeong Bae
Published: October 2021

Mixed results have been reported on the evaluation of the coastal carbon cycle and its contribution to the global carbon cycle, mainly due to the shortage of observational data and the considerable spatiotemporal variability arising from complex biogeochemical factors. In this study, the partial pressure of carbon dioxide (pCO2) and related environmental factors were measured in the Jinhae–Geoje–Tongyeong bay region of the southeastern Korean Peninsula in February 2014, August 2014, April 2015, and October 2015. The mean pCO2 of surface seawater ranged from 215 to 471 μatm and exhibited a high correlation with the surface seawater temperature when data for August were excluded (R2 = 0.69), indicating that the seasonal variation in CO2 could be largely attributed to the variation in seawater temperature. However, a severe red tide event occurred in August 2014, when the lowest pCO2 value was observed despite a relatively high seawater temperature. It is considered that the active biological production of phytoplankton related to red tides counteracted the summer increase in pCO2. Based on the correlation between pCO2 and temperature, the estimated decrease in pCO2 caused by non-thermal factors was approximately 200 μatm. During the entire study period, the air–sea CO2 flux ranged from −14.2 to 3.7 mmol m–2 d–1, indicating that the study area served as an overall sink for atmospheric CO2, and only functioned as a weak source during October. The mean annual CO2 flux estimated from the correlation with temperature was −5.1 mmol m–2 d–1. However, because this estimate did not include reductions caused by sporadic events of biological production, such as red tides and phytoplankton blooms, the actual uptake flux is considered to be higher. The mean saturation state (ΩAr) value of carbonate aragonite was 2.61 for surface water and 2.04 for bottom water. However, the mean ΩAr of bottom water was <2 in August and October, and the ΩAr values measured at some of the bottom water stations in August were <1. Considering that the period from August to October corresponds to the reproduction and growth stages of shellfish, such low ΩAr values could be very damaging to shellfish production and the aquaculture industry.
Structure and Connectivity of Hydrothermal Vent Communities Along the Mid-Ocean Ridges in the West Indian Ocean: A Review
Authors: Perez Maëva , Sun Jin , Xu Qinzeng , Qian Pei-Yuan
Published: October 2021

To date, 13 biologically active hydrothermal vent (HTV) fields have been described on the West Indian Ocean ridges. Knowledge of benthic communities of these vent ecosystems serves as scientific bases for assessing the resilience of these ecosystems under the global effort to strike an elegant balance between future deep-sea mining and biodiversity conservation. This review aims to summarize our up-to-date knowledge of the benthic community structure and connectivity of these Indian vents and to identify knowledge gaps and key research questions to be prioritized in order to assess the resilience of these communities. The HTVs in the West Indian Ocean are home to many unique invertebrate species such as the remarkable scaly-foot snail. While distinct in composition, the macrofaunal communities of the Indian HTVs share many characteristics with those of other HTVs, including high endemism, strong zonation at the local scale, and a simple food web structure. Furthermore, Indian vent benthic communities are mosaic compositions of Atlantic, Pacific, and Antarctic HTV fauna possibly owning to multiple waves of past colonization. Phylogeographic studies have shed new light into these migratory routes. Current animal connectivity across vent fields appears to be highly influenced by distance and topological barriers. However, contrasting differences in gene flow have been documented across species. Thus, a better understanding of the reproductive biology of the Indian vent animals and the structure of their population at the local scale is crucial for conservation purposes. In addition, increased effort should be given to characterizing the vents’ missing diversity (at both the meio and micro-scale) and elucidating the functional ecology of these vents.
Drug Susceptibility and Molecular Epidemiology of Klebsiella pneumoniae Bloodstream Infection in ICU Patients in Shanghai, China
Authors: Xiao Shuzhen , Chen Tianchi , Wang Hairu , Zeng Qian , Chen Qing , Yang Zhitao , Han Lizhong , Chen Erzhen
Published: October 2021

Background: Bloodstream infections (BSIs) are recognized as important nosocomial infections. Klebsiella pneumoniae is one of the major causes of bacteremia. This retrospective study focused on drug susceptibility and molecular epidemiology of K. pneumoniae isolated from intensive care unit (ICU) patients with BSI in Shanghai, China.

Methods: Consecutive K. pneumoniae isolates were collected from ICU patients. Antibiotic susceptibility testing was conducted by the broth microdilution method. PCR was performed to detect antimicrobial resistance genes. We also completed multilocus sequence typing (MLST) and GoeBURST was used to analyze the result of MLST.

Results: A total of 78 K. pneumoniae isolates were enrolled. K. pneumoniae from ICU-BSIs were highly resistant to almost all common antibiotics. The most frequent resistance determinants responsible for extended-spectrum β-lactamase (ESBL) producers were blaCTX−M−14, blaCTX−M−15, and blaCTX−M−55. KPC was the only enzyme, which was detected by the carbapenemase producers. The most principal sequence types (STs) were ST11, ST15, and ST23.

Conclusion: This study presents for the first time the antibiotic resistance phenotype and molecular epidemiology of K. pneumoniae isolated from ICU patients with BSIs in Shanghai. ICU-BSI K. pneumoniae is characteristic of a high resistance rate. The occurrence of the KPC-2 enzyme may result from nosocomial clonal dissemination of ST11 K. pneumoniae.
Lack of Evidence of COVID-19 Being a Risk Factor of Alopecia Areata: Results of a National Cohort Study in South Korea
Authors: Kim Jeehyun , Hong Kwan , Gómez Gómez Raquel Elizabeth , Kim Soojin , Chun Byung Chul
Published: October 2021

Background: Concerns about alopecia areata (AA) in coronavirus disease 2019 (COVID-19) patients have emerged among dermatologists. However, most of the extant kinds of literature have limited implications by relying on cross-sectional studies with restricted study subjects without the control group.

Objective: Our study aims to investigate the risk of developing AA among COVID-19 patients in South Korea using national representative data.

Methods: We used the National Health Insurance Service COVID-19 cohort database, comprising COVID-19 patients and the control group, all of whom were diagnosed from January 1, 2020, to June 4, 2020. Patients were defined as individuals who were confirmed as COVID-19 positive, regardless of disease severity. Controls were defined as those who were confirmed as COVID-19 negatives. People with a history of AA during the period 2015–2019 were excluded. The primary endpoint was a new diagnosis of AA (ICD-10-Code: L63). The adjusted incidence rate ratio (IRR) of developing AA was estimated using a log-link Poisson regression model based on incidence density. The model adjusted for (1) age and sex and (2) demographic variables (age, sex, place of residence, and income level).

Results: A total of 226,737 individuals (7,958 [3.5%] cases and 218,779 [96.5%] controls) were included in the final analysis. The ratio of newly diagnosed AA was 18/7,958 (0.2%) in cases and 195/218,779 (0.1%) in controls. IRRs of COVID-19 patients having newly diagnosed AA compared to controls were 0.78 (95% CI: 0.48–1.27) when age and sex were adjusted for and 0.60 (95% CI: 0.35–1.03) when all demographic variables were adjusted for.

Conclusion: Diagnosis of COVID-19 was not significantly associated with the development of AA even after appropriately adjusting for covariates.
Effect of Aspergillus and Bacillus Concentration on Cotton Growth Promotion
Authors: Escobar Diaz Paola Andrea , dos Santos Roberta Mendes , Baron Noemi Carla , Gil Oniel Jeremias Aguirre , Rigobelo Everlon Cid
Published: October 2021

There are no studies in literature on the effect of inoculant concentrations on plant growth promotion. Therefore, in the present study, two experiments were carried out, one under pot conditions and the other in the field with cotton crop, in order to verify the effect ofAspergillusandBacillusconcentrations on the biometric and nutritional parameters of plant and soil, in addition to yield. The pot experiment evaluated the effect of different concentrations, ranging from 1 × 104to 1 × 1010colony-forming units per milliliter (CFU mL–1) of microorganismsBacillus velezensis(Bv188),Bacillus subtilis(Bs248),B. subtilis(Bs290),Aspergillus brasiliensis(F111),Aspergillus sydowii(F112), andAspergillussp.versicolorsection (F113) on parameters plant growth promotion and physicochemical and microbiological of characteristics soil. Results indicated that the different parameters analyzed are influenced by the isolate and microbial concentrations in a different way and allowed the selection of four microorganisms (Bs248, Bv188, F112, and F113) and two concentrations (1 × 104and 1 × 1010CFU mL–1), which were evaluated in the field to determine their effect on yield. The results show that, regardless of isolate, inoculant concentrations promoted the same fiber and seed cotton yield. These results suggest that lower inoculant concentrations may be able to increase cotton yield, eliminating the need to use concentrated inoculants with high production cost.
Genomic and Transcriptomic Insight of Giant Sclerotium Formation of Wood-Decay Fungi
Authors: Cao Shuo , Yang Yang , Bi Guiqi , Nelson David , Hu Sheng , Makunga Nokwanda Pearl , Yu Bin , Liu Xin , Li Xiaohua , Hu Xuebo
Published: October 2021

Many fungi form persistent and dormant sclerotia with compact hardened mycelia during unfavorable circumstances. While most of these sclerotia are small in size, Wolfiporia cocos, a wood-decay fungus, grows into giant sclerotia, which are mainly composed of polysaccharides of linear (1→3)-β-D-glucans. To explore the underlying mechanism of converting sophisticated wood polysaccharides for biosynthesis of highly homogenized glucans in W. cocos, we sequenced and assembled the genome of a cultivated W. cocos strain (WCLT) in China. The 62-Mb haploid genome contains 44.2% repeat sequences, of which, 48.0% are transposable elements (TEs). Contrary to the genome of W. cocos from North America, WCLT has independently undergone a partial genome duplication (PGD) event. The large-scale TE insertion and PGD occurrence overlapped with an archeological Pleistocene stage of low oxygen and high temperature, and these stresses might have induced the differences in sclerotium due to geographical distribution. The wood decomposition enzymes, as well as sclerotium-regulator kinases, aquaporins, and highly expanded gene families such as NAD-related families, together with actively expressed 1,3-β-glucan synthase for sclerotium polysaccharides, all have contributed to the sclerotium formation and expansion. This study shall inspire further exploration on how fungi convert wood into simple glucans in the sclerotium of W. cocos.
Effects of Xylanase in Corn- or Wheat-Based Diets on Cecal Microbiota of Broilers
Authors: Wang Jian , Cao Heng , Bao Chengling , Liu Yajing , Dong Bing , Wang Chunlin , Shang Zhenda , Cao Yunhe , Liu Suozhu
Published: October 2021

Xylanase has been demonstrated to improve growth performance of broilers fed wheat- or corn-based diets due to its ability to degrade arabinoxylans (AX). However, content and structure of AX in corn and wheat are different, comparing effects of xylanase on cecal microbiota of broilers fed corn- or wheat-based diets could further elaborate the mechanism of the specificity of xylanase for different cereal grains. Thus, a total of 192 one-day-old broilers were randomly allotted into four dietary treatments, including wheat-soybean basal diet, wheat-soybean basal diet with 4,000U/kg xylanase, corn-soybean basal diet, and corn-soybean basal diet with 4,000U/kg xylanase to evaluate interactive effects of xylanase in corn- or wheat-based diets on broilers cecal microbiota during a 6-week production period. The results indicated that bacterial community clustering was mainly due to cereal grains rather than xylanase supplementation. Compared with broilers fed wheat-based diets, corn-based diets increased alpha-diversity and separated from wheat-based diets (p<0.05). Xylanase modulated the abundance of specific bacteria without changing overall microbial structure. In broilers fed wheat-based diets, xylanase increased the abundance of Lactobacillus, Bifidobacterium, and some butyrate-producing bacteria, and decreased the abundance of non-starch polysaccharides-degrading (NSP) bacteria, such as Ruminococcaceae and Bacteroidetes (p<0.05). In broilers fed corn-based diets, xylanase decreased the abundance of harmful bacteria (such as genus Faecalitalea and Escherichia-Shigella) and promoted the abundance of beneficial bacteria (such as Anaerofustis and Lachnospiraceae_UCG_010) in the cecum (p<0.05). Overall, xylanase supplementation to wheat- or corn-based diets improved broilers performance and cecal microbiota composition. Xylanase supplementation to wheat-based diets increased the abundance of butyrate-producing bacteria and decreased the abundance of NSP-degrading bacteria. Moreover, positive effects of xylanase on cecal microbiota of broilers fed corn-based diets were mostly related to the inhibition of potentially pathogenic bacteria, and xylanase supplementation to corn-based diets slightly affected the abundance of butyrate-producing bacteria and NSP-degrading bacterium, the difference might be related to lower content of AX in corn compared to wheat.