bluuebunny/crossref_metadata_2025 huggingface dataset:
Transforming Future Teaching through ‘Carpe Diem’ Learning Design
Authors: Salmon Gilly , Wright Phemie
Published: January 2014

Academic staff in Higher Education (HE) need to transform their teaching practices to support more future-orientated, digital, student-centered learning. Promoting, enabling and implementing these changes urgently requires acceptable, meaningful and effective staff development for academics. We identify four key areas that are presenting as barriers to the implementation of successful staff development. We illuminate the Carpe Diem learning design workshop process and illustrate its impact on academic staff as a viable, constructive alternative to traditional staff development processes. The Carpe Diem model directly exposes and addresses the irony that educational institutions expect their academic staff to learn to design and deliver personalized, mobile and technology-enhanced learning to students, whilst wedded to ‘one size fits all’ face-to-face interventions…or worse, ‘page turning’ e-learning that masquerades as staff development. To avoid further frustrations and expensive, inappropriate initiatives, the spirit and practice of Carpe Diem could act as a ‘pathfinder beacon’, and be more widely adopted to enable fast, effective and fully embedded, learner-ready, future-proofed learning.
Linearization and Input-Output Decoupling for Nonlinear Control of Proton Exchange Membrane Fuel Cells
Authors: Chang Long-Yi , Chen Hung-Cheng
Published: January 2014

This paper presents a nonlinear control strategy utilizing the linearization and input-output decoupling approach for a nonlinear dynamic model of proton exchange membrane fuel cells (PEMFCs). The multiple-input single-output (MISO) nonlinear model of the PEMFC is derived first. The dynamic model is then transformed into a multiple-input multiple-output (MIMO) square system by adding additional states and outputs so that the linearization and input-output decoupling approach can be directly applied. A PI tracking control is also introduced to the state feedback control law in order to reduce the steady-state errors due to parameter uncertainty. This paper also proposes an adaptive genetic algorithm (AGA) for the multi-objective optimization design of the tracking controller. The comprehensive results of simulation demonstrate that the PEMFC with nonlinear control has better transient and steady-state performance compared to conventional linear techniques.
Lessons and Implications from Genome-Wide Association Studies (GWAS) Findings of Blood Cell Phenotypes
Authors: Chami Nathalie , Lettre Guillaume
Published: January 2014

Genome-wide association studies (GWAS) have identified reproducible genetic associations with hundreds of human diseases and traits. The vast majority of these associated single nucleotide polymorphisms (SNPs) are non-coding, highlighting the challenge in moving from genetic findings to mechanistic and functional insights. Nevertheless, large-scale (epi)genomic studies and bioinformatic analyses strongly suggest that GWAS hits are not randomly distributed in the genome but rather pinpoint specific biological pathways important for disease development or phenotypic variation. In this review, we focus on GWAS discoveries for the three main blood cell types: red blood cells, white blood cells and platelets. We summarize the knowledge gained from GWAS of these phenotypes and discuss their possible clinical implications for common (e.g., anemia) and rare (e.g., myeloproliferative neoplasms) human blood-related diseases. Finally, we argue that blood phenotypes are ideal to study the genetics of complex human traits because they are fully amenable to experimental testing.
Influences of Satisfaction with Telecare and Family Trust in Older Taiwanese People
Authors: Tsai Chung-Hung , Kuo Yu-Ming , Uei Shu-Lin
Published: January 2014

The level of trust given towards telecare by the family members of older people using the service is extremely important. Family trust may be an influential factor in deciding whether to use such services. This study focuses on older people’s satisfaction with telecare and examines their family’s trust in telecare services. Influences on intention to continue using telecare services are also explored. A questionnaire-based survey on 60 communities dwelling older people who had been receiving telecare services in the past two years was employed. This study developed a satisfaction and trust scale based on previous studies. Our results show that older people’s satisfaction with telecare services and families’ trust were influential in decided whether to continue to use of telecare services. These findings can help medical institutions to better insight into the user experience of telecare to help them provide future services that better comply with clients’ desires and requirements.
Detection of Potential Drug-Drug Interactions for Outpatients across Hospitals
Authors: Yeh Yu-Ting , Hsu Min-Hui , Chen Chien-Yuan , Lo Yu-Sheng , Liu Chien-Tsai
Published: January 2014

The National Health Insurance Administration (NHIA) has adopted smart cards (or NHI-IC cards) as health cards to carry patients’ medication histories across hospitals in Taiwan. The aims of this study are to enhance a computerized physician order entry system to support drug-drug interaction (DDI) checking based on a patient’s medication history stored in his/her NHI-IC card. For performance evaluation, we developed a transaction tracking log to keep track of every operation on NHI-IC cards. Based on analysis of the transaction tracking log from 1 August to 31 October 2007, physicians read patients’ NHI-IC cards in 71.01% (8,246) of patient visits; 33.02% (2,723) of the card reads showed at least one medicine currently being taken by the patient, 82.94% of which were prescribed during the last visit. Among 10,036 issued prescriptions, seven prescriptions (0.09%) contained at least one drug item that might interact with the currently-taken medicines stored in NHI-IC cards and triggered pop-up alerts. This study showed that the capacity of an NHI-IC card is adequate to support DDI checking across hospitals. Thus, the enhanced computerized physician order entry (CPOE) system can support better DDI checking when physicians are making prescriptions and provide safer medication care, particularly for patients who receive medication care from different hospitals.
Joint Effects of Smoking and Sedentary Lifestyle on Lung Function in African Americans: The Jackson Heart Study Cohort
Authors: Campbell Jenkins Brenda , Sarpong Daniel , Addison Clifton , White Monique , Hickson DeMarc , White Wendy , Burchfiel Cecil
Published: January 2014

This study examined: (a) differences in lung function between current and non current smokers who had sedentary lifestyles and non sedentary lifestyles and (b) the mediating effect of sedentary lifestyle on the association between smoking and lung function in African Americans. Sedentary lifestyle was defined as the lowest quartile of the total physical activity score. The results of linear and logistic regression analyses revealed that non smokers with non sedentary lifestyles had the highest level of lung function, and smokers with sedentary lifestyles had the lowest level. The female non-smokers with sedentary lifestyles had a significantly higher FEV1% predicted and FVC% predicted than smokers with non sedentary lifestyles (93.3% vs. 88.6%; p = 0.0102 and 92.1% vs. 86.9%; p = 0.0055 respectively). FEV1/FVC ratio for men was higher in non smokers with sedentary lifestyles than in smokers with non sedentary lifestyles (80.9 vs. 78.1; p = 0.0048). Though smoking is inversely associated with lung function, it seems to have a more deleterious effect than sedentary lifestyle on lung function. Physically active smokers had higher lung function than their non physically active counterparts.
Effects of Simulated Heat Waves on ApoE-/- Mice
Authors: Wang Chunling , Zhang Shuyu , Tian Ying , Wang Baojian , Shen Shuanghe
Published: January 2014

The effects of simulated heat waves on body weight, body temperature, and biomarkers of cardiac function in ApoE-/- mice were investigated. Heat waves were simulated in a meteorological environment simulation chamber according to data from a heat wave that occurred in July 2001 in Nanjing, China. Eighteen ApoE-/- mice were divided into control group, heat wave group, and heat wave BH4 group. Mice in the heat wave and BH4 groups were exposed to simulated heat waves in the simulation chamber. Mice in BH4 group were treated with gastric lavage with BH4 2 h prior to heat wave exposure. Results showed that the heat waves did not significantly affect body weight or ET-1 levels. However, mice in the heat wave group had significantly higher rectal temperature and NO level and lower SOD activity compared with mice in the control group (p < 0.01), indicating that heat wave had negative effects on cardiac function in ApoE-/- mice. Gastric lavage with BH4 prior to heat wave exposure significantly reduced heat wave-induced increases in rectal temperature and decreases in SOD activity. Additionally, pretreatment with BH4 further increased NO level in plasma. Collectively, these beneficial effects demonstrate that BH4 may potentially mitigate the risk of coronary heart disease in mice under heat wave exposure. These results may be useful when studying the effects of heat waves on humans.
Diffusion of Nitrogen and Phosphorus Across the Sediment-Water Interface and In Seawater at Aquaculture Areas of Daya Bay, China
Authors: Cheng Xiangju , Zeng Yingxue , Guo Zhenren , Zhu Liangsheng
Published: January 2014

With the yearly increasing marine culture activities in floating cages in Daya Bay, China, the effects of pollution may overlap and lead to more severe water environmental problems. In order to track the impacts of the marine culture in floating cages on water environment, sediments and overlying water were sampled by cylindrical samplers at three representative aquaculture areas of Daya Bay. The water content, porosity, density of sediments as well as the vertical distributions of ammonia nitrogen and active phosphate in pore water along sediments depth were measured. The release rate and annual released quantity of the nutrients across sediment-water interface were calculated using Fick’s Law. A horizontal two-dimensional mathematical model was developed to compute the spatial and temporal distributions of the nutrients in seawater after being released across the sediment-water interface. The results showed that the sediments, with a high content and a large annual released quantity of nitrogen and phosphorus, constitute a potential inner source of seawater pollution. Influenced by tide and water depth, the scope of diffusion and migration of the nutrients appears as a long belt which is about 1 km long and 50 m wide. Seawater in this area is vulnerable to eutrophication.
Using a Spatio-Temporal GIS Database to Monitor the Spatial Evolution of Urban Flooding Phenomena. The Case of Athens Metropolitan Area in Greece
Authors: Diakakis Michalis , Pallikarakis Aggelos , Katsetsiadou Katerina
Published: January 2014

This work focuses on the spatial evolution of urban flooding phenomena in Athens metropolitan area, in Greece. The study examines the locations of flood-related damages and fatalities in Athens in 1880–2010, in comparison with the city’s evolution, to identify possible changes in their spatial distribution. GIS software was used to develop a spatio-temporal database storing information on the location and timing of these flood-related incidents. The database was then used to determine and quantify spatio-temporal changes of flooding in the city. Results showed a gradual migration of areas subject to flooding from the central to the western part of Athens and finally to the northwestern and southern suburbs. This migration was accompanied by a significant increase of incidents in the newly built parts of the city and a simultaneous decrease at the oldest parts, following closely the city’s spatial expansion over the study period. In addition, the study was able to identify and delineate particular parts of the city that experienced an increasing trend of flood incidents during the last decades and should be given priority in future flood risk mitigation actions.
In Silico Identification and Characterization of N-Terminal Acetyltransferase Genes of Poplar (Populus trichocarpa)
Authors: Zhu Hang-Yong , Li Chun-Ming , Wang Li-Feng , Bai Hui , Li Yan-Ping , Yu Wen-Xi , Xia De-An , Liu Chang-Cai
Published: January 2014

N-terminal acetyltransferase (Nats) complex is responsible for protein N-terminal acetylation (Nα-acetylation), which is one of the most common covalent modifications of eukaryotic proteins. Although genome-wide investigation and characterization of Nat catalytic subunits (CS) and auxiliary subunits (AS) have been conducted in yeast and humans they remain unexplored in plants. Here we report on the identification of eleven genes encoding eleven putative Nat CS polypeptides, and five genes encoding five putative Nat AS polypeptides in Populus. We document that the expansion of Nat CS genes occurs as duplicated blocks distributed across 10 of the 19 poplar chromosomes, likely only as a result of segmental duplication events. Based on phylogenetic analysis, poplar Nat CS were assigned to six subgroups, which corresponded well to the Nat CS types (CS of Nat A–F), being consistent with previous reports in humans and yeast. In silico analysis of microarray data showed that in the process of normal development of the poplar, their Nat CS and AS genes are commonly expressed at one relatively low level but share distinct tissue-specific expression patterns. This exhaustive survey of Nat genes in poplar provides important information to assist future studies on their functional role in poplar.
The Self-Assembled Behavior of DNA Bases on the Interface
Authors: Liu Lei , Xia Dan , Klausen Lasse , Dong Mingdong
Published: January 2014

A successful example of self-assembly in a biological system is that DNA can be an excellent agent to self-assemble into desirable two and three-dimensional nanostructures in a well-ordered manner by specific hydrogen bonding interactions between the DNA bases. The self-assembly of DNA bases have played a significant role in constructing the hierarchical nanostructures. In this review article we will introduce the study of nucleic acid base self-assembly by scanning tunneling microscopy (STM) at vacuum and ambient condition (the liquid/solid interface), respectively. From the ideal condition to a more realistic environment, the self-assembled behaviors of DNA bases are introduced. In a vacuum system, the energetic advantages will dominate the assembly formation of DNA bases, while at ambient condition, more factors such as conformational freedom and the biochemical environment will be considered. Therefore, the assemblies of DNA bases at ambient condition are different from the ones obtained under vacuum. We present the ordered nanostructures formed by DNA bases at both vacuum and ambient condition. To construct and tailor the nanostructure through the interaction between DNA bases, it is important to understand the assembly behavior and features of DNA bases and their derivatives at ambient condition. The utilization of STM offers the advantage of investigating DNA base self-assembly with sub-molecular level resolution at the surface.
Hypoxia Enhances Protective Effect of Placental-Derived Mesenchymal Stem Cells on Damaged Intestinal Epithelial Cells by Promoting Secretion of Insulin-Like Growth Factor-1
Authors: Du Lili , Yu Yanqiu , Ma Haiying , Lu Xiaomei , Ma Ling , Jin Yunan , Zhang Haipeng
Published: January 2014

Apoptosis and necrosis of intestinal epithelial cells (IECs), induced by ischemia-reperfusion (I/R) injury, can lead to dysfunction of the intestinal barrier, which could cause multiple organ dysfunction syndromes. Mesenchymal stem cells (MSCs) have the potential of providing protective effects on damaged IECs via paracrine action. This study investigated whether hypoxia can enhance the protective effect of placental-derived MSCs (pMSCs) on H2O2-treated-caco2 cells, and explored the possible mechanism. The pMSCs isolated by tissue culture were fibroblast-like, positive for CD73, CD90 and CD105 and can differentiate into chondrocytes and endothelial cells. Five days after treatment with H2O2, the numbers of living caco2 cells significantly decreased. More live H2O2-treated-caco2 cells were observed in pMSCs hypoxia culture medium (pMSCs-HCM) than pMSCs normoxia culture medium (pMSCs-NCM), and the application of a specific antibody that blocked insulin-like growth factor-1 (IGF-1) leads to a significant decrease of the protective effect of pMSCs-HCM. Hypoxia can promote IGF-1 expression of pMSCs at mRNA and protein levels, and caco2 stably expressed IGF-1 receptor. Knocking down IGF-1 expression in pMSCs by siRNA resulted in a significant attenuation of the increase in apoptosis of H2O2-treated-caco2 cultured in pMSCs-HCM. In conclusion, hypoxia can increase the protective effect of pMSCs on H2O2-treated-caco2 cells via a promotion of their paracrine actions, and the key cytokine involved is IGF-1.
Antidiabetic Activity of Zinc Oxide and Silver Nanoparticles on Streptozotocin-Induced Diabetic Rats
Authors: Alkaladi Ali , Abdelazim Aaser , Afifi Mohamed
Published: January 2014

The use of nanoparticles in medicine is an attractive proposition. In the present study, zinc oxide and silver nanoparticles were evaluated for their antidiabetic activity. Fifty male albino rats with weight 120 ± 20 and age 6 months were used. Animals were grouped as follows: control; did not receive any type of treatment, diabetic; received a single intraperitoneal dose of streptozotocin (100 mg/kg), diabetic + zinc oxide nanoparticles (ZnONPs), received single daily oral dose of 10 mg/kg ZnONPs in suspension, diabetic + silver nanoparticles (SNPs); received a single daily oral dose of SNP of 10 mg/kg in suspension and diabetic + insulin; received a single subcutaneous dose of 0.6 units/50 g body weight. Zinc oxide and silver nanoparticles induce a significant reduced blood glucose, higher serum insulin, higher glucokinase activity higher expression level of insulin, insulin receptor, GLUT-2 and glucokinase genes in diabetic rats treated with zinc oxide, silver nanoparticles and insulin. In conclusion, zinc oxide and sliver nanoparticles act as potent antidiabetic agents.
Maternal Germinal Trisomy 21 in Down Syndrome
Authors: Hultén Maj , Öijerstedt Linn , Iwarsson Erik , Jonasson Jon
Published: January 2014

It has now been over 50 years since it was discovered that Down syndrome is caused by an extra chromosome 21, i.e., trisomy 21. In the interim, it has become clear that in the majority of cases, the extra chromosome is inherited from the mother, and there is, in this respect, a strong maternal age effect. Numerous investigations have been devoted to clarifying the underlying mechanism, most recently suggesting that this situation is exceedingly complex, involving both biological and environmental factors. On the other hand, it has also been proposed that germinal trisomy 21 mosaicism, arising during the very early stages of maternal oogenesis with accumulation of trisomy 21 germ cells during subsequent development, may be the main predisposing factor. We present data here on the incidence of trisomy 21 mosaicism in a cohort of normal fetal ovarian samples, indicating that an accumulation of trisomy 21 germ cells does indeed take place during fetal oogenesis, i.e., from the first to the second trimester of pregnancy. We presume that this accumulation of trisomy 21 (T21) cells is caused by their delay in maturation and lagging behind the normal cells. We further presume that this trend continues during the third trimester of pregnancy and postnatally, up until ovulation, thereby explaining the maternal age effect in Down syndrome.
A Hydrodynamic Modelling Framework for Strangford Lough Part 1: Tidal Model
Authors: Kregting Louise , Elsäßer Björn
Published: January 2014

Hydrodynamic models are a powerful tool that can be used by a wide range of end users to assist in predicting the effects of both physical and biological processes on local environmental conditions. This paper describes the development of a tidal model for Strangford Lough, Northern Ireland, a body of water renowned for the location of the first grid-connected tidal turbine, SeaGen, as well as the UK’s third Marine Nature Reserve. Using MIKE 21 modelling software, the development, calibration and performance of the model are described in detail. Strangford Lough has a complex flow pattern with high flows through the Narrows (~3.5 m/s) linking the main body of the Lough to the Irish Sea and intricate flow patterns around the numerous islands. With the aid of good quality tidal and current data obtained throughout the Lough during the model development, the surface elevation and current magnitude between the observed and numerical model were almost identical with model skill >0.98 and >0.84 respectively. The applicability of the model is such that it can be used as an important tool for the prediction of important ecological processes as well as engineering applications within Strangford Lough.
Novel Corrosion Inhibitor for Mild Steel in HCl
Authors: Al-Amiery Ahmed , Kadhum Abdul , Alobaidy Abdul Hameed , Mohamad Abu , Hoon Pua
Published: January 2014

Corrosion inhibitory effects of new synthesized compound namely 5,5'- ((1Z,1'Z)-(1,4-phenylenebis(methanylylidene))bis(azanylylidene))bis(1,3,4-thiadiazole-2-thiol) (PBB) on mild steel in 1.0 M HCl was investigated at different temperatures using open circuit potential (OCP), potentiodynamic polarization (PDP) and electrochemical impedance spectroscopy (EIS). Results showed that PBB inhibited mild steel corrosion in acid solution and indicated that the inhibition efficiencies increased with the concentration of inhibitor, but decreased proportionally with temperature. Changes in impedance parameters suggested the adsorption of PBB on the mild steel surface, leading to the formation of protective films.
Shape Memory Properties of PBS-Silica Hybrids
Authors: Paderni Katia , Fabbri Paola , Toselli Maurizio , Messori Massimo
Published: January 2014

A series of novel Si–O–Si crosslinked organic/inorganic hybrid semi-crystalline polymers with shape memory properties was prepared from alkoxysilane-terminated poly(butylene succinate) (PBS) by water-induced silane crosslinking under organic solvent-free and catalyst-free conditions. The hydrolyzation and condensation of alkoxysilane end groups allowed for the generation of silica-like crosslinking points between the polymeric chains, acting not only as chemical net-points, but also as inorganic filler for a reinforcement effect. The resulting networks were characterized using differential scanning calorimetry (DSC), thermogravimetric analysis (TGA), dynamic-mechanical analysis (DMA) and tensile and shape memory tests to gain insight into the relationship between the polymeric structure, the morphology and the properties. By controlling the molecular weight of the PBS precursor, a fine tuning of the crosslinking density and the inorganic content of the resulting network was possible, leading to different thermal, mechanical and shape memory properties. Thanks to their suitable morphology consisting of crystalline domains, which represent the molecular switches between the temporary and permanent shapes, and chemical net-points, which permit the shape recovery, the synthesized materials showed good shape memory characteristics, being able to fix a significant portion of the applied strain in a temporary shape and to restore their original shape above their melting temperature.
Anti-Inflammatory Activity and Mechanism of a Lipid Extract from Hard-Shelled Mussel (Mytilus Coruscus) on Chronic Arthritis in Rats
Authors: Li Guipu , Fu Yuanqing , Zheng Jusheng , Li Duo
Published: January 2014

The present study was designed to investigate the anti-inflammatory activity and mechanism of a lipid extract from hard-shelled mussel (Mytilus coruscus) on adjuvant-induced (AIA) and collagen-induced arthritis (CIA) in rats. AIA and CIA rats that received hard-shelled mussel lipid extract (HMLE group) at a dose of 100 mg/kg demonstrated significantly lower paw swelling and arthritic index, but higher body weight gain than those which received olive oil (control group). Similar results were found in arthritic rats that received New Zealand green-lipped mussel lipid extract (GMLE) at the same dosage. The levels of leukotriene B4 (LTB4), prostaglandin E2 (PGE2), thromboxane B2 (TXB2) in the serum, and interleukin-1β (IL-1β), IL-6, interferon-γ (INF-γ), tumor necrosis factor-α (TNF-α) in the ankle joint synovial fluids of HMLE group rats were significantly lower than those of control group. However, the levels of IL-4 and IL-10 in HMLE group rats were significantly higher than those in the control group. Decreased mRNA expressions of matrix metalloproteinase 1 (MMP1) and MMP13, but increased tissue inhibitor of metalloproteinase 1 (TIMP1) were observed in the knee joint synovium tissues of HMLE group rats when compared with the control group. No hepatotoxicity was observed in both HMLE and GMLE group rats. The present results indicated that HMLE had a similarly strong anti-inflammatory activity as GMLE. Such a strong efficacy could result from the suppression of inflammatory mediators (LTB4, PGE2, TXB2), pro-inflammatory cytokines (IL-1β, IL-6, INF-γ, TNF-α) and MMPs (MMP1, MMP13), and the promotion of anti-inflammatory cytokines (IL-4, IL-10) and TIMPs (TIMP1) productions.
Antibacterial and Antibiofilm Activities of Tryptoquivalines and Meroditerpenes Isolated from the Marine-Derived Fungi Neosartorya paulistensis, N. laciniosa, N. tsunodae, and the Soil Fungi N. fischeri and N. siamensis
Authors: Gomes Nelson , Bessa Lucinda , Buttachon Suradet , Costa Paulo , Buaruang Jamrearn , Dethoup Tida , Silva Artur , Kijjoa Anake
Published: January 2014

A new meroditerpene, sartorypyrone C (5), was isolated, together with the known tryptoquivalines L (1a), H (1b), F (1c), 3′-(4-oxoquinazolin-3-yl) spiro [1H-indole-3,5′]-2,2′-dione (2) and 4(3H)-quinazolinone (3), from the culture of the marine sponge-associated fungus Neosartorya paulistensis (KUFC 7897), while reexamination of the fractions remaining from a previous study of the culture of the diseased coral-derived fungus N. laciniosa (KUFC 7896) led to isolation of a new tryptoquivaline derivative tryptoquivaline T (1d). Compounds 1a–d, 2, 3, and 5, together with aszonapyrones A (4a) and B (4b), chevalones B (6) and C (7a), sartorypyrones B (7b) and A (8), were tested for their antibacterial activity against four reference strains (Staphylococcus aureus, Bacillus subtilis, Escherichia coli, and Pseudomonas aeruginosa), as well as the environmental multidrug-resistant isolates. Only aszonapyrone A (4a) and sartorypyrone A (8) exhibited significant antibacterial activity as well as synergism with antibiotics against the Gram-positive multidrug-resistant strains. Antibiofilm assays of aszonapyrone A (4a) and sartorypyrone A (8) showed that practically no biofilm was formed in the presence of their 2× MIC and MIC. However, the presence of a sub-inhibitory concentration of ½ MIC of 4a and 8 was found to increase the biofilm production in both reference strain and the multidrug-resistant isolates of S. aureus.
Applications of Copper-Catalyzed Click Chemistry in Activity-Based Protein Profiling
Authors: Martell Julianne , Weerapana Eranthie
Published: January 2014

Activity-based protein profiling (ABPP) is a chemical proteomic technique that enables the interrogation of protein activity directly within complex proteomes. Given the dominant role of posttranslational modifications in regulating protein function in vivo, ABPP provides a direct readout of activity that is not attained through traditional proteomic methods. ABPP relies on the design of covalent binding probes that either target a specific enzyme or a class of enzymes with related function. These covalent warheads are coupled to either fluorophores or biotin groups for visualization and enrichment of these active proteins. The advent of bioorthogonal chemistries, in particular, the copper (I)-catalyzed azide-alkyne cycloaddition (CuAAC), has benefitted the field of ABPP by achieving the following: (1) replacing bulky reporter groups with smaller alkyne or azide groups to promote cell permeability; (2) adding modularity to the system such that a single probe can be diversified with a variety of reporter groups without the need to develop new synthetic routes; and (3) enabling the conjugation of complex linkers to facilitate quantitative proteomic analyses. Here, we summarize recent examples of CuAAC in ABPP that serve to illustrate the contribution of bioorthogonal chemistry to advancing discoveries in this field.
Griffipavixanthone from Garcinia oblongifolia Champ Induces Cell Apoptosis in Human Non-Small-Cell Lung Cancer H520 Cells in Vitro
Authors: Shi Jun-Min , Huang Hui-Juan , Qiu Sheng-Xiang , Feng Shi-Xiu , Li Xu-E
Published: January 2014

Griffipavixanthone (GPX) is a dimeric xanthone which was isolated in a systematic investigation of Garcinia oblongifolia Champ. In this study, we investigate the effect of GPX on cell proliferation and apoptosis on human Non-small-cell lung cancer (NSCLC) cells in vitro and determine the mechanisms of its action. GPX inhibited the growth of H520 cells in dose- and time-dependent manners, with IC50 values of 3.03 ± 0.21 μM at 48 h. The morphologic characteristics of apoptosis and apoptotic bodies were observed by fluorescence microscope and transmission electron microscope. In addition, Annexin V/PI double staining assay revealed that cells in early stage of apoptosis were significantly increased upon GPX treatment dose-dependently. Rh123 staining assay indicated that GPX reduced the mitochondrial membrane potential. DCFH-DA staining revealed that intracellular ROS increased with GPX treatment. Moreover, GPX cleaved and activated caspase-3. In summary, this study showed that GPX inhibited H520 cell proliferation in dose- and time-dependent manner. Further mechanistic study indicated that GPX induced cell apoptosis through mitochondrial apoptotic pathway accompanying with ROS production. Our results demonstrate the potential application of GPX as an anti-non-small cell lung cancer agent.
Natural Products from the Genus Tephrosia
Authors: Chen Yinning , Yan Tao , Gao Chenghai , Cao Wenhao , Huang Riming
Published: January 2014

The genus Tephrosia, belonging to the Leguminosae family, is a large pantropical genus of more than 350 species, many of which have important traditional uses in agriculture. This review not only outlines the source, chemistry and biological evaluations of natural products from the genus Tephrosia worldwide that have appeared in literature from 1910 to December 2013, but also covers work related to proposed biosynthetic pathways and synthesis of some natural products from the genus Tephrosia, with 105 citations and 168 new compounds.
Resveratrol-4-O-D-(2'-galloyl)-glucopyranoside Isolated from Polygonum cuspidatum Exhibits Anti-Hepatocellular Carcinoma Viability by Inducing Apoptosis via the JNK and ERK Pathway
Authors: Xie Qichao , Yang Yupeng , Wang Zhiyi , Chen Fanglin , Zhang Anmei , Liu Chengcheng
Published: January 2014

Resveratrol-4-O-D-(2'-galloyl)-glucopyranoside (RESG) is one of the active compounds isolated from Polygonum cuspidatum. The purpose of our present study was to investigate the anti-hepatocellular carcinoma effect of RESG in vitro and in vivo, and the possible mechanisms in vitro. In vitro, our results showed that RESG could significantly inhibit the human hepatocellular carcinoma viability in the MTT assay, in a dose- and time-dependent manner. Furthermore, our results demonstrated that RESG could induce SMMC-7721 cell apoptosis and activate caspases 3 and caspases 9 by using Annexin V-FITC staining and western blot, respectively. In vivo, RESG also showed efficacy in SMMC-7721 xenograft model in nude mice, and further molecule mechanisms were investigated in vitro. The results showed that RESG up-regulated the p-JNK expressions, whereas it down-regulated the p-ERK expressions. Above results demonstrated that RESG is a potential therapeutic agent for hepatocellular carcinoma via JNK and ERK pathway to induce apoptosis. Our finding provided a basis for further development of RESG as an anticancer agent.
A New Dicoumarinyl Ether from the Roots of Stellera chamaejasme L
Authors: Li Jie , Shen Qian , Bao Chen-Hao , Chen Li-Ting , Li Xiang-Rong
Published: January 2014

A new dicoumarinyl ether, 3-hydroxy-6-methoxy-7,7'-dicoumarinyl ether (1), was isolated from the roots of Stellera chamaejasme L, together with the known compound umbelliferone (2). Their structures were determined on the basis of spectroscopic techniques, including IR, NMR, and HR-ESI-MS.
4-Aminobenzoic Acid-Coated Maghemite Nanoparticles as Potential Anticancer Drug Magnetic Carriers: A Case Study on Highly Cytotoxic Cisplatin-Like Complexes Involving 7-Azaindoles
Authors: Štarha Pavel , Stavárek Martin , Tuček Jiří , Trávníček Zdeněk
Published: January 2014

This study describes a one-pot synthesis of superparamagnetic maghemite-based 4-aminobenzoic acid-coated spherical core-shell nanoparticles (PABA@FeNPs) as suitable nanocomposites potentially usable as magnetic carriers for drug delivery. The PABA@FeNPs system was subsequently functionalized by the activated species (1* and 2*) of highly in vitro cytotoxic cis-[PtCl2(3Claza)2] (1; 3Claza stands for 3-chloro-7-azaindole) or cis-[PtCl2(5Braza)2] (2; 5Braza stands for 5-bromo-7-azaindole), which were prepared by a silver(I) ion assisted dechlorination of the parent dichlorido complexes. The products 1*@PABA@FeNPs and 2*@PABA@FeNPs, as well as an intermediate PABA@FeNPs, were characterized by a combination of various techniques, such as Mössbauer, FTIR and EDS spectroscopy, thermal analysis, SEM and TEM. The results showed that the products consist of well-dispersed maghemite-based nanoparticles of 13 nm average size that represent an easily obtainable system for delivery of highly cytotoxic cisplatin-like complexes in oncological practice.
Protective Effect of Resveratrol on Biomarkers of Oxidative Stress Induced by Iron/Ascorbate in Mouse Spermatozoa
Authors: Mojica-Villegas María , Izquierdo-Vega Jeannett , Chamorro-Cevallos Germán , Sánchez-Gutiérrez Manuel
Published: January 2014

Resveratrol (RVT) is a polyphenolic compound found mainly in the grape and attributed with various pharmacological properties, among them their antioxidant activity. In the present study, we assess the antioxidant activity of resveratrol on oxidative damage induced by ferrous iron/ascorbate (100 µM/150 µM) in sperm of CD1+ mice. We evaluated several parameters in spermatozoa treated with or without resveratrol: (i) sperm quality analysis; (ii) mitochondrial transmembrane potential (Δѱm); (iii) ROS generation; (iv) superoxide dismutase (SOD) activity; (v) glutathione peroxidase (GPX) activity; (vi) lipid peroxidation; (vii) and in vitro fertilization (IVF) capability. Spermatozoa treated with RVT (15 µg/mL) before ferrous iron/ascorbate treatment exhibited: a significant increase in motility (8-fold), a significant increase in viability (2-fold), a significant increase in Δѱm (1.15-fold), accompanied with a significant decrease in the generation of ROS (4.96-fold), a significant decrease in GPX activity (1.32-fold), and a significant decrease in lipid peroxidation concentration (10.29-fold) relative to spermatozoa treated with ferrous iron/ascorbate; however, no changes in SOD activity were observed. Finally, spermatozoa treated with RVT before ferrous iron/ascorbate treatment showed a significant increase in oocyte fertilization (1.2-fold), relative to spermatozoa treated with ferrous iron/ascorbate. These results suggest that RVT possesses antioxidant properties that may prevent the deleterious effects produced by oxidative damage on spermatozoa, resulting in the maintenance of fertility.
Genomics-Based Exploration of Virulence Determinants and Host-Specific Adaptations of Pseudomonas syringae Strains Isolated from Grasses
Authors: Dudnik Alexey , Dudler Robert
Published: January 2014

The Pseudomonas syringae species complex has recently been named the number one plant pathogen, due to its economic and environmental impacts, as well as for its role in scientific research. The bacterium has been repeatedly reported to cause outbreaks on bean, cucumber, stone fruit, kiwi and olive tree, as well as on other crop and non-crop plants. It also serves as a model organism for research on the Type III secretion system (T3SS) and plant-pathogen interactions. While most of the current work on this pathogen is either carried out on one of three model strains found on dicot plants with completely sequenced genomes or on isolates obtained from recent outbreaks, not much is known about strains isolated from grasses (Poaceae). Here, we use comparative genomics in order to identify putative virulence-associated genes and other Poaceae-specific adaptations in several newly available genome sequences of strains isolated from grass species. All strains possess only a small number of known Type III effectors, therefore pointing to the importance of non-Type III secreted virulence factors. The implications of this finding are discussed.
Retrofitting Masonry Walls with Carbon Mesh
Authors: Bischof Patrick , Suter René
Published: January 2014

Static-cyclic shear load tests and tensile tests on retrofitted masonry walls were conducted at UAS Fribourg for an evaluation of the newly developed retrofitting system, the S&P ARMO-System. This retrofitting system consists of a composite of carbon mesh embedded in a specially adapted high quality spray mortar. It can be applied with established construction techniques using traditional construction materials. The experimental study has shown that masonry walls reinforced by this retrofitting system reach a similar strength and a higher ductility than retrofits by means of bonded carbon fiber reinforced polymer sheets. Hence, the retrofitting system using carbon fiber meshes embedded in a high quality mortar constitutes a good option for static or seismic retrofits or reinforcements for masonry walls. However, the experimental studies also revealed that the mechanical anchorage of carbon mesh may be delicate depending on its design.
Characterizing the Spatial Structure of Mangrove Features for Optimizing Image-Based Mangrove Mapping
Authors: Kamal Muhammad , Phinn Stuart , Johansen Kasper
Published: January 2014

Understanding the relationship between the size of mangrove structural features and the optimum image pixel size is essential to support effective mapping activities in mangrove environments. This study developed a method to estimate the optimum image pixel size for accurately mapping mangrove features (canopy types and features (gaps, tree crown), community, and cover types) and tested the applicability of the results. Semi-variograms were used to characterize the spatial structure of mangrove vegetation by estimating the size of dominant image features in WorldView-2 imagery resampled over a range of pixel sizes at several mangrove areas in Moreton Bay, Australia. The results show that semi-variograms detected the variations in the structural properties of mangroves in the study area and its forms were controlled by the image pixel size, the spectral-band used, and the spatial characteristics of the scene object, e.g., tree or gap. This information was synthesized to derive the optimum image pixel size for mapping mangrove structural and compositional features at specific spatial scales. Interpretation of semi-variograms combined with field data and visual image interpretation confirms that certain vegetation structural features are detectable at specific scales and can be optimally detected using a specific image pixel size. The analysis results provide a basis for multi-scale mangrove mapping using high spatial resolution image datasets.
Integration of Satellite Imagery, Topography and Human Disturbance Factors Based on Canonical Correspondence Analysis Ordination for Mountain Vegetation Mapping: A Case Study in Yunnan, China
Authors: Zhang Zhiming , Van Coillie Frieke , Ou Xiaokun , De Wulf Robert
Published: January 2014

The integration between vegetation data, human disturbance factors, and geo-spatial data (Digital Elevation Model (DEM) and image data) is a particular challenge for vegetation mapping in mountainous areas. The present study aimed to incorporate the relationships between species distribution (or vegetation spatial distribution pattern) and topography and human disturbance factors with remote sensing data, to improve the accuracy of mountain vegetation maps. Two different mountainous areas located in Lancang (Mekong) watershed served as study sites. An Artificial Neural Network (ANN) architecture classification was used as image classification protocol. In addition, canonical correspondence analysis (CCA) ordination was applied to address the relationships between topography and human disturbance factors with the spatial distribution of vegetation patterns. We used ordinary kriging at unobserved locations to predict the CCA scores. The CCA ordination results showed that the vegetation spatial distribution patterns are strongly affected by topography and human disturbance factors. The overall accuracy of vegetation classification was significantly improved by incorporating DEM or four CCA axes as additional channels in both the northern and southern study areas. However, there was no significant difference between using DEM or four CCA axes as extra channels in the northern steep mountainous areas because of a strong redundancy between CCA axes and DEM data. In the southern lower mountainous areas, the accuracy was significantly higher using four CCA axes as extra bands, compared to using DEM as an extra band. In the southern study area, the variance of vegetation data explained by human disturbance factors was larger than the variance explained by topographic attributes.
Historical Single Image-Based Modeling: The Case of Gobierna Tower, Zamora (Spain)
Authors: Garcia-Gago Jesús , Gomez-Lahoz Javier , Rodríguez-Méndez Javier , González-Aguilera Diego
Published: January 2014

Historical perspective images have been proved to be very useful to properly provide a dimensional analysis of buildings façades or even to generate a pseudo-3D reconstruction based on rectified images of the whole structure. In this paper, the case of Gobierna Tower (Zamora, Spain) is analyzed from a historical single image-based modeling approach. In particular, a bottom-up approach, which takes advantage from the perspective of the image, the existence of the three vanishing points and the usual geometric constraints (i.e., planarity, orthogonality, and parallelism) is applied for the dimensional analysis of a destroyed historical building. Results were compared with ground truth measurements existing in a historical topographical surveying obtaining deviations of about 1%.
Towards Whole Body Fatigue Assessment of Human Movement: A Fatigue-Tracking System Based on Combined sEMG and Accelerometer Signals
Authors: Dong Haiwei , Ugalde Izaskun , Figueroa Nadia , El Saddik Abdulmotaleb
Published: January 2014

This paper proposes a method to assess the overall fatigue of human body movement. First of all, according to previous research regarding localized muscular fatigue, a linear relation is assumed between the mean frequency and the muscular working time when the muscle is experiencing fatigue. This assumption is verified with a rigorous statistical analysis. Based on this proven linearity, localized muscular fatigue is simplified as a linear model. Furthermore, localized muscular fatigue is considered a dynamic process and, hence, the localized fatigue levels are tracked by updating the parameters with the most current surface electromyogram (sEMG) measurements. Finally, an overall fatigue level is computed by fusing localized muscular fatigue levels. The developed fatigue-tracking system is evaluated with two fatigue experiments (in which 10 male subjects and seven female subjects participated), including holding self-weight (dip start position training) and lifting weight with one arm (arm curl training).
Gaze Tracking System for User Wearing Glasses
Authors: Gwon Su , Cho Chul , Lee Hyeon , Lee Won , Park Kang
Published: January 2014

Conventional gaze tracking systems are limited in cases where the user is wearing glasses because the glasses usually produce noise due to reflections caused by the gaze tracker’s lights. This makes it difficult to locate the pupil and the specular reflections (SRs) from the cornea of the user’s eye. These difficulties increase the likelihood of gaze detection errors because the gaze position is estimated based on the location of the pupil center and the positions of the corneal SRs. In order to overcome these problems, we propose a new gaze tracking method that can be used by subjects who are wearing glasses. Our research is novel in the following four ways: first, we construct a new control device for the illuminator, which includes four illuminators that are positioned at the four corners of a monitor. Second, our system automatically determines whether a user is wearing glasses or not in the initial stage by counting the number of white pixels in an image that is captured using the low exposure setting on the camera. Third, if it is determined that the user is wearing glasses, the four illuminators are turned on and off sequentially in order to obtain an image that has a minimal amount of noise due to reflections from the glasses. As a result, it is possible to avoid the reflections and accurately locate the pupil center and the positions of the four corneal SRs. Fourth, by turning off one of the four illuminators, only three corneal SRs exist in the captured image. Since the proposed gaze detection method requires four corneal SRs for calculating the gaze position, the unseen SR position is estimated based on the parallelogram shape that is defined by the three SR positions and the gaze position is calculated. Experimental results showed that the average gaze detection error with 20 persons was about 0.70° and the processing time is 63.72 ms per each frame.
Assessing Inter-Sensor Variability and Sensible Heat Flux Derivation Accuracy for a Large Aperture Scintillometer
Authors: Rambikur Evan , Chávez José
Published: January 2014

The accuracy in determining sensible heat flux (H) of three Kipp and Zonen large aperture scintillometers (LAS) was evaluated with reference to an eddy covariance (EC) system over relatively flat and uniform grassland near Timpas (CO, USA). Other tests have revealed inherent variability between Kipp and Zonen LAS units and bias to overestimate H. Average H fluxes were compared between LAS units and between LAS and EC. Despite good correlation, inter-LAS biases in H were found between 6% and 13% in terms of the linear regression slope. Physical misalignment was observed to result in increased scatter and bias between H solutions of a well-aligned and poorly-aligned LAS unit. Comparison of LAS and EC H showed little bias for one LAS unit, while the other two units overestimated EC H by more than 10%. A detector alignment issue may have caused the inter-LAS variability, supported by the observation in this study of differing power requirements between LAS units. It is possible that the LAS physical misalignment may have caused edge-of-beam signal noise as well as vulnerability to signal noise from wind-induced vibrations, both having an impact on the solution of H. In addition, there were some uncertainties in the solutions of H from the LAS and EC instruments, including lack of energy balance closure with the EC unit. However, the results obtained do not show clear evidence of inherent bias for the Kipp and Zonen LAS to overestimate H as found in other studies.