bluuebunny/crossref_metadata_2025 huggingface dataset:
Genome-Wide Identification of Reference Genes for Reverse-Transcription Quantitative PCR in Goat Rumen
Authors: Zhao Juan , Wang Cheng , Zhang Lin , Lei Aiai , Wang Linjie , Niu Lili , Zhan Siyuan , Guo Jiazhong , Cao Jiaxue , Li Li , Zhang Hongping , Zhong Tao
Published: November 2021

As the largest chamber of the ruminant stomach, the rumen not only serves as the principal absorptive surface and nutrient transport pathway from the lumen into the animal, but also plays an important short-chain fatty acid (SCFA) metabolic role in addition to protective functions. Accurate characterization of the gene expression profiles of genes of interest is essential to the exploration of the intrinsic regulatory mechanisms of rumen development in goats. Thus, the selection of suitable reference genes (RGs) is an important prerequisite for real-time quantitative PCR (RT-qPCR). In the present study, 16 candidate RGs were identified from our previous transcriptome sequencing of caprine rumen tissues. The quantitative expressions of the candidate RGs were measured using the RT-qPCR method, and the expression stability of the RGs was assessed using the geNorm, NormFinder, and BestKeeper programs. GeNorm analysis showed that the M values were less than 0.5 for all the RGs except GAPT4, indicating that they were stably expressed in the rumen tissues throughout development. RPS4X and RPS6 were the two most stable RGs. Furthermore, the expressions of two randomly selected target genes (IGF1 and TOP2A), normalized by the selected most stable RGs (RPS4X and RPS6), were consistent with the results of RNA sequencing, while the use of GAPDH and ACTB as RGs resulted in altered profiles. Overall, RPS4X and RPS6 showed the highest expression stability and the lowest coefficients of variation, and could be used as the optimal reference combination for quantifying gene expression in rumen tissues via RT-qPCR analysis.
The Effects of Age and Initial Shoulder Posture on the Upper Limb Range of Harvesting Movements among Oil Palm Harvesters
Authors: Tumit Nelson Pady , Rambely Azmin Sham , Deros Baba Md
Published: November 2021

The occurrence of musculoskeletal diseases (MSDs) among oil palm harvesters has been studied extensively, but there is a lack of published studies on the evaluation of the range of harvesting movements. This information is important to design the ergonomic tools needed in the manual harvesting of oil palm. We examined the upper limb motion of oil palm harvesters to determine the effects of age and initial shoulder postures on their range of harvesting movements. Twenty male harvesters performed a manual push-pull-cutting technique (≥3 m fresh fruit branches (FFBs) height). The study was conducted by capturing the 1-D push-pull cutting technique harvesting movement via the Quintic system at the sagittal plane. The active range of harvesting movements during the harvesting phases and the range of the harvesting movement of the initial and maximum postures of their upper arms were calculated based on the kinematic data generated with the Quintic Biomechanics system (Version 29). Participants were divided into three groups based on their age, and two groups based on their initial support shoulder position, and dominant shoulder position. Data were analysed using the ANOVA and t-test. The joint movement angle pattern of the harvesters was classified into three phases: preparation, execution, and ending. The age-related variances for the initial and maximum support shoulder postures were determined. The range of harvesting movements and the active range of harvesting movements during the preparation phase at the support shoulder and wrist region were also observed. The initial support shoulder posture displayed a statistical variance in the maximum support and dominant range of harvesting movements of the shoulder. It was also linked to a reduced active range of harvesting movements for the support shoulder flexion and dominant wrist ulnar deviation at the preparation phase. Furthermore, the initial dominant shoulder exhibited a statistically significant difference for the dominant arm and a reduced active range of harvesting movements in the dominant wrist ulnar deviation at the preparation phase. This study produced important evidence about factors to be considered for the ergonomic design of harvesting tools and workplaces, especially within the oil palm industry.
Characteristics of Atmospheric Inorganic Nitrogen Wet Deposition in Coastal Urban Areas of Xiamen, China
Authors: Feng Yao , Zhao Shuhui , Wang Shanshan , Lin Qi , Luo Yang , Xu Suqing , Yang Hang , Shi Jun , Zhang Miming , Jiao Liping , Yan Jinpei
Published: November 2021

To evaluate the impact of increasing atmospheric nitrogen deposition input to the coastal ecosystem, measurements were conducted to analyze the inorganic nitrogen wet deposition to Xiamen Island during April to August in 2014. Using ion chromatography and shown to contain main nine water-soluble ions—including Na+, NH4+, K+, Mg2+, Ca2+, Cl−, NO−, NO3−, and SO42−—we analyzed the composition of the wet deposition sample and verified the contribution of different ions to the different sources. The results showed that the mean NO3−-N and NH4+-N concentration in rainfall for five months was 4.55 ± 5.15 mg·L−1 (n = 31) and 1.20 ± 1.16 mg·L−1 (n = 33), respectively. Highest NO3−-N (74.65 mg·N·L−1) and NH4+-N (16.06 mg N·L−1) values were both observed in May. Maximum NO3−-N deposition (507.5 mg·N·m−2) was also in May, while the highest NH4+-N deposition (99.8 mg·N·m−2) was in June. The total inorganic wet nitrogen flux during sampling period was 11.1 kg·N·ha−1. The HYSPLIT backward air masses trajectory and USEPA PMF model was used, as the composition of the air masses passing over the sample area were impacted from three sources: fertilizers and biomass combustion, formation of secondary aerosol, and Marine aerosols. The concentration ratio of SO42− and NO3− in ranged between 0.5 and 3 in rainfall samples with an average of 1.34, suggesting that the contribution from vehicle exhaust to air pollution in the sample area is increasing. Long-term continuous monitoring of wet deposition in this region needs to be expanded to fully understand the impacts of human activity on air quality and to quantify N deposition to local marine ecosystems.
Basic Facts about Numerical Simulations of Atmospheric Composition in the City of Sofia
Authors: Ivanov Vladimir , Georgieva Ivelina
Published: November 2021

The atmospheric composition in urban areas is one of the primary tasks in air pollution studies. The research aims to provide a statistically reliable assessment of the atmospheric composition climate of the city of Sofia—typical and extreme features of the special/temporal behavior, annual means, seasonal and diurnal variations. For that purpose, extensive numerical simulations of the atmospheric composition fields in Sofia city have been performed. Three models were chosen as modeling tools. We used WRF as a meteorological pre-processor, CMAQ as a chemical transport model, and SMOKE as the emission pre-processor of Models-3 system. We developed the following conclusions. The daily concentration changes of the two essential air pollution species—nitrogen dioxide (NO2) and fine particle matters (FPRM, particulate matter (PM2.5), which has a diameter between 0 and 2.5 micrometers)—have different magnitudes. Second, the emissions relative contributions to the concentration of different species could be different, varying from 0% to above 100%. The contributions of different emission categories to other species surface concentrations have various diurnal courses. Last, the total concentration change (ΔC) is different for each pollutant. The sign of the contributions of some processes is evident. Still, some may have different signs depending on the type of emissions, weather conditions, or topography.
Understanding Solid Electrolyte Interphase Nucleation and Growth on Lithium Metal Surfaces
Authors: Angarita-Gomez Stefany , Balbuena Perla B.
Published: November 2021

Experiments and theory are needed to decode the exact structure and distribution of components of a passivation layer formed at the anode surface of Li metal batteries, known as the Solid Electrolyte Interphase (SEI). Due to the inherent dynamic behavior as well as the lithium reactivity, the SEI structure and its growth mechanisms are still unclear. This study uses molecular simulation and computational chemistry tools to investigate the initial nucleation and growth dynamics of LiOH and Li2O that provide us with thermodynamics and structural information about the nucleating clusters of each species. Following the most favorable pathways for the addition of each of the components to a given nascent SEI cluster reveals their preferential nucleation mechanisms and illustrates different degrees of crystallinity and electron density distribution that are useful to understand ionic transport through SEI blocks.
Insights into Emerging Begomovirus–Deltasatellite Complex Diversity: The First Deltasatellite Infecting Legumes
Authors: Fiallo-Olivé Elvira , Bastidas Liseth , Chirinos Dorys T. , Navas-Castillo Jesús
Published: November 2021

Begomoviruses and associated DNA satellites are involved in pathosystems that include many cultivated and wild dicot plants and the whitefly vector Bemisia tabaci. A survey of leguminous plants, both crops and wild species, was conducted in Venezuela, an understudied country, to determine the presence of begomoviruses. Molecular analysis identified the presence of bipartite begomoviruses in 37% of the collected plants. Four of the six begomoviruses identified constituted novel species, and two others had not been previously reported in Venezuela. In addition, a novel deltasatellite (cabbage leaf curl deltasatellite, CabLCD) was found to be associated with cabbage leaf curl virus (CabLCV) in several plant species. CabLCD was the first deltasatellite found to infect legumes and the first found in the New World to infect a crop plant. Agroinoculation experiments using Nicotiana benthamiana plants and infectious viral clones confirmed that CabLCV acts as a helper virus for CabLCD. The begomovirus–deltasatellite complex described here is also present in wild legume plants, suggesting the possible role of these plants in the emergence and establishment of begomoviral diseases in the main legume crops in the region. Pathological knowledge of these begomovirus–deltasatellite complexes is fundamental to develop control methods to protect leguminous crops from the diseases they cause.
Lipid Catabolism and ROS in Cancer: A Bidirectional Liaison
Authors: Castelli Serena , De Falco Pamela , Ciccarone Fabio , Desideri Enrico , Ciriolo Maria Rosa
Published: November 2021

Although cancer cell metabolism was mainly considered to rely on glycolysis, with the concomitant impairment of mitochondrial metabolism, it has recently been demonstrated that several tumor types are sustained by oxidative phosphorylation (OXPHOS). In this context, endogenous fatty acids (FAs) deriving from lipolysis or lipophagy are oxidised into the mitochondrion, and are used as a source of energy through OXPHOS. Because the electron transport chain is the main source of ROS, cancer cells relying on fatty acid oxidation (FAO) need to be equipped with antioxidant systems that maintain the ROS levels under the death threshold. In those conditions, ROS can act as second messengers, favouring proliferation and survival. Herein, we highlight the different responses that tumor cells adopt when lipid catabolism is augmented, taking into account the different ROS fates. Many papers have demonstrated that the pro- or anti-tumoral roles of endogenous FA usage are hugely dependent on the tumor type, and on the capacity of cancer cells to maintain redox homeostasis. In light of this, clinical studies have taken advantage of the boosting of lipid catabolism to increase the efficacy of tumor therapy, whereas, in other contexts, antioxidant compounds are useful to reduce the pro-survival effects of ROS deriving from FAO.
Role of Isolated Limb Perfusion in the Era of Targeted Therapies and Immunotherapy in Melanoma. A Systematic Review of The Literature
Authors: Sevilla-Ortega Lourdes , Ferrándiz-Pulido Lara , Palazón-Carrión Natalia , Álamo de la Gala María del Carmen , de Toro-Salas Rubén , Garnacho-Montero José , Marcos-Rodríguez José Antonio , Agudo Martínez Ana , Araji-Tiliani Omar , Calvo-Morón María Cinta , Barquero-Aroca José Miguel , Fernández-López Antonio Ramón , Jaime-Borrego José María , Santos-Jiménez Juan Carlos , Moreno-Ramírez David , de la Cruz-Merino Luis
Published: November 2021

Background. Isolated limb perfusion (ILP) is a locoregional procedure indicated by the unresectable melanoma of the limbs. Its complexity and highly demanding multidisciplinary approach means that it is a technique only implemented in a few referral centers around the globe. This report aims to examine its potential role in the era of targeted therapies and immunotherapy by conducting a systematic review of the literature on ILP. Methods. PubMed, Embase and Cochrane Library were searched. The eligibility criteria included publications from 2000–2020 providing valid data o effectiveness, survival or toxicity. Studies in which the perfusion methodology was not clearly described, letters to the editor, non-systematic reviews and studies that applied outdated clinical guidelines were excluded. To rule out studies of a low methodological quality and assess the risk of bias, the following aspects were also required: a detailed description of the applied ILP regimen, the clinical context, follow-up periods, analyzed clinical endpoints, and the number of analyzed ILPs. The disagreements were resolved by consensus. The results are presented in tables and figures. Results. Twenty-seven studies including 2637 ILPs were selected. The median overall response rate was 85%, with a median complete response rate of 58.5%. The median overall survival was 38 months, with a 5-year overall survival of 35%. The toxicity was generally mild according to Wieberdink toxicity criteria. Discussion. ILP still offer a high efficacy in selected patients. The main limitation of our review is the heterogeneity and age of most of the articles, as well as the absence of clinical trials comparing ILP with other procedures, making it difficult to transfer its results to the current era. Conclusions. ILP is still an effective and safe procedure for selected patients with unresectable melanoma of the limbs. In the era of targeted therapies and immunotherapy, ILP remains an acceptable and reasonable palliative treatment alternative, especially to avoid limb amputations. The ongoing clinical trials combining systemic therapies and ILP will provide more valuable information in the future to clarify the potential synergism of both strategies.
Inhibiting Lysine Demethylase 1A Improves L1CAM-Specific CAR T Cell Therapy by Unleashing Antigen-Independent Killing via the FAS-FASL Axis
Authors: Sulejmani Ornela , Grunewald Laura , Andersch Lena , Schwiebert Silke , Klaus Anika , Winkler Annika , Astrahantseff Kathy , Eggert Angelika , Henssen Anton G. , Schulte Johannes H. , Anders Kathleen , Künkele Annette
Published: November 2021

Chimeric antigen receptor (CAR) T cell therapy has emerged as a promising treatment strategy, however, therapeutic success against solid tumors such as neuroblastoma remains modest. Recurrence of antigen-poor tumor variants often ultimately results in treatment failure. Using antigen-independent killing mechanisms such as the FAS receptor (FAS)-FAS ligand (FASL) axis through epigenetic manipulation may be a way to counteract the escape achieved by antigen downregulation. Analysis of public RNA-sequencing data from primary neuroblastomas revealed that a particular epigenetic modifier, the histone lysine demethylase 1A (KDM1A), correlated negatively with FAS expression. KDM1A is known to interact with TP53 to repress TP53-mediated transcriptional activation of genes, including FAS. We showed that pharmacologically blocking KDM1A activity in neuroblastoma cells with the small molecule inhibitor, SP-2509, increased FAS cell-surface expression in a strictly TP53-dependent manner. FAS upregulation sensitized neuroblastoma cells to FAS-FASL-dependent killing and augmented L1CAM-directed CAR T cell therapy against antigen-poor or even antigen-negative tumor cells in vitro. The improved therapeutic response was abrogated when the FAS-FASL interaction was abolished with an antagonistic FAS antibody. Our results show that KDM1A inhibition unleashes an antigen-independent killing mechanism via the FAS-FASL axis to make tumor cell variants that partially or totally suppress antigen expression susceptible to CAR T cell therapy.
TP53 Combined Phenotype Score Is Associated with the Clinical Outcome of TP53-Mutated Myelodysplastic Syndromes
Authors: Yabe Mariko , Omarbekova Aidana Z. , Hsu Meier , May Hannah , Arcila Maria E. , Liu Ying , Dogan Ahmet , Brunner Andrew M. , Nardi Valentina , Hasserjian Robert P. , Klimek Virginia M.
Published: November 2021

Mutations of TP53 are observed in 5–10% of patients in myelodysplastic syndrome (MDS) and are associated with adverse outcomes. Previous studies indicate that the TP53 allelic state and variant allele frequency of TP53 mutation impact patient outcomes, but there is significant heterogeneity within this MDS subgroup. We performed retrospective review of clinicopathologic and genomic information of 107 patients with TP53-mutated MDS. We assessed each mutation according to the phenotypic annotation of TP53 mutations (PHANTM) and analyzed the associations between predicted TP53 mutant function, represented by the PHANTM combined phenotype score, and overall survival (OS) using the log rank test and Cox regression. Our results indicated that patients with PHANTM combined phenotype score above the median (>1) had significantly shorter OS compared to those with scores below the median (median OS: 10.59 and 16.51 months, respectively, p = 0.025). This relationship remained significant in multivariable analysis (HR (95%CI): 1.62 (1.01–2.58), p = 0.044) and identified to have an independent prognostic influence, accounting for known risk such as IPSS-R and other standard risk variables. Our results suggest that the functional information of TP53 mutations, represented by PHANTM combined phenotype score, are associated with the clinical outcome of patients with TP53-mutated MDS.
Deletion or Inhibition of Astrocytic Transglutaminase 2 Promotes Functional Recovery after Spinal Cord Injury
Authors: Elahi Anissa , Emerson Jacen , Rudlong Jacob , Keillor Jeffrey W. , Salois Garrick , Visca Adam , Girardi Peter , Johnson Gail V.W. , Pröschel Christoph
Published: November 2021

Following CNS injury, astrocytes become “reactive” and exhibit pro-regenerative or harmful properties. However, the molecular mechanisms that cause astrocytes to adopt either phenotype are not well understood. Transglutaminase 2 (TG2) plays a key role in regulating the response of astrocytes to insults. Here, we used mice in which TG2 was specifically deleted in astrocytes (Gfap-Cre+/− TG2fl/fl, referred to here as TG2-A-cKO) in a spinal cord contusion injury (SCI) model. Deletion of TG2 from astrocytes resulted in a significant improvement in motor function following SCI. GFAP and NG2 immunoreactivity, as well as number of SOX9 positive cells, were significantly reduced in TG2-A-cKO mice. RNA-seq analysis of spinal cords from TG2-A-cKO and control mice 3 days post-injury identified thirty-seven differentially expressed genes, all of which were increased in TG2-A-cKO mice. Pathway analysis revealed a prevalence for fatty acid metabolism, lipid storage and energy pathways, which play essential roles in neuron–astrocyte metabolic coupling. Excitingly, treatment of wild type mice with the selective TG2 inhibitor VA4 significantly improved functional recovery after SCI, similar to what was observed using the genetic model. These findings indicate the use of TG2 inhibitors as a novel strategy for the treatment of SCI and other CNS injuries.
DNA Methylation and Immune Memory Response
Authors: Mittelstaedt Nathalia Noschang , Becker André Luiz , de Freitas Deise Nascimento , Zanin Rafael F. , Stein Renato T. , Duarte de Souza Ana Paula
Published: November 2021

The generation of memory is a cardinal feature of the adaptive immune response, involving different factors in a complex process of cellular differentiation. This process is essential for protecting the second encounter with pathogens and is the mechanism by which vaccines work. Epigenetic changes play important roles in the regulation of cell differentiation events. There are three types of epigenetic regulation: DNA methylation, histone modification, and microRNA expression. One of these epigenetic changes, DNA methylation, occurs in cytosine residues, mainly in CpG dinucleotides. This brief review aimed to analyse the literature to verify the involvement of DNA methylation during memory T and B cell development. Several studies have highlighted the importance of the DNA methyltransferases, enzymes that catalyse the methylation of DNA, during memory differentiation, maintenance, and function. The methylation profile within different subsets of naïve activated and memory cells could be an interesting tool to help monitor immune memory response.
Mechanisms, Diagnosis and Treatment of Bone Metastases
Authors: Ban Jozef , Fock Valerie , Aryee Dave N. T. , Kovar Heinrich
Published: November 2021

Bone and bone marrow are among the most frequent metastatic sites of cancer. The occurrence of bone metastasis is frequently associated with a dismal disease outcome. The prevention and therapy of bone metastases is a priority in the treatment of cancer patients. However, current therapeutic options for patients with bone metastatic disease are limited in efficacy and associated with increased morbidity. Therefore, most current therapies are mainly palliative in nature. A better understanding of the underlying molecular pathways of the bone metastatic process is warranted to develop novel, well-tolerated and more successful treatments for a significant improvement of patients’ quality of life and disease outcome. In this review, we provide comparative mechanistic insights into the bone metastatic process of various solid tumors, including pediatric cancers. We also highlight current and innovative approaches to biologically targeted therapy and immunotherapy. In particular, we discuss the role of the bone marrow microenvironment in the attraction, homing, dormancy and outgrowth of metastatic tumor cells and the ensuing therapeutic implications. Multiple signaling pathways have been described to contribute to metastatic spread to the bone of specific cancer entities, with most knowledge derived from the study of breast and prostate cancer. However, it is likely that similar mechanisms are involved in different types of cancer, including multiple myeloma, primary bone sarcomas and neuroblastoma. The metastatic rate-limiting interaction of tumor cells with the various cellular and noncellular components of the bone-marrow niche provides attractive therapeutic targets, which are already partially exploited by novel promising immunotherapies.
Decanoic Acid Stimulates Autophagy in D. discoideum
Authors: Warren Eleanor C. , Kramár Pavol , Lloyd-Jones Katie , Williams Robin S. B.
Published: November 2021

Ketogenic diets, used in epilepsy treatment, are considered to work through reduced glucose and ketone generation to regulate a range of cellular process including autophagy induction. Recent studies into the medium-chain triglyceride (MCT) ketogenic diet have suggested that medium-chain fatty acids (MCFAs) provided in the diet, decanoic acid and octanoic acid, cause specific therapeutic effects independent of glucose reduction, although a role in autophagy has not been investigated. Both autophagy and MCFAs have been widely studied in Dictyostelium, with findings providing important advances in the study of autophagy-related pathologies such as neurodegenerative diseases. Here, we utilize this model to analyze a role for MCFAs in regulating autophagy. We show that treatment with decanoic acid but not octanoic acid induces autophagosome formation and modulates autophagic flux in high glucose conditions. To investigate this effect, decanoic acid, but not octanoic acid, was found to induce the expression of autophagy-inducing proteins (Atg1 and Atg8), providing a mechanism for this effect. Finally, we demonstrate a range of related fatty acid derivatives with seizure control activity, 4BCCA, 4EOA, and Epilim (valproic acid), also function to induce autophagosome formation in this model. Thus, our data suggest that decanoic acid and related compounds may provide a less-restrictive therapeutic approach to activate autophagy.
Distinct Metabolomic Signatures in Preclinical and Obstructive Hypertrophic Cardiomyopathy
Authors: Schuldt Maike , van Driel Beau , Algül Sila , Parbhudayal Rahana Y. , Barge-Schaapveld Daniela Q. C. M. , Güçlü Ahmet , Jansen Mark , Michels Michelle , Baas Annette F. , van de Wiel Mark A. , Nieuwdorp Max , Levin Evgeni , Germans Tjeerd , Jans Judith J. M. , van der Velden Jolanda
Published: November 2021

Hypertrophic Cardiomyopathy (HCM) is a common inherited heart disease with poor risk prediction due to incomplete penetrance and a lack of clear genotype–phenotype correlations. Advanced imaging techniques have shown altered myocardial energetics already in preclinical gene variant carriers. To determine whether disturbed myocardial energetics with the potential to serve as biomarkers are also reflected in the serum metabolome, we analyzed the serum metabolome of asymptomatic carriers in comparison to healthy controls and obstructive HCM patients (HOCM). We performed non-quantitative direct-infusion high-resolution mass spectrometry-based untargeted metabolomics on serum from fasted asymptomatic gene variant carriers, symptomatic HOCM patients and healthy controls (n = 31, 14 and 9, respectively). Biomarker panels that discriminated the groups were identified by performing multivariate modeling with gradient-boosting classifiers. For all three group-wise comparisons we identified a panel of 30 serum metabolites that best discriminated the groups. These metabolite panels performed equally well as advanced cardiac imaging modalities in distinguishing the groups. Seven metabolites were found to be predictive in two different comparisons and may play an important role in defining the disease stage. This study reveals unique metabolic signatures in serum of preclinical carriers and HOCM patients that may potentially be used for HCM risk stratification and precision therapeutics.
The Unfolded Protein Response as a Guardian of the Secretory Pathway
Authors: Radanović Toni , Ernst Robert
Published: November 2021

The endoplasmic reticulum (ER) is the major site of membrane biogenesis in most eukaryotic cells. As the entry point to the secretory pathway, it handles more than 10,000 different secretory and membrane proteins. The insertion of proteins into the membrane, their folding, and ER exit are affected by the lipid composition of the ER membrane and its collective membrane stiffness. The ER is also a hotspot of lipid biosynthesis including sterols, glycerophospholipids, ceramides and neural storage lipids. The unfolded protein response (UPR) bears an evolutionary conserved, dual sensitivity to both protein-folding imbalances in the ER lumen and aberrant compositions of the ER membrane, referred to as lipid bilayer stress (LBS). Through transcriptional and non-transcriptional mechanisms, the UPR upregulates the protein folding capacity of the ER and balances the production of proteins and lipids to maintain a functional secretory pathway. In this review, we discuss how UPR transducers sense unfolded proteins and LBS with a particular focus on their role as guardians of the secretory pathway.
Precisely Monomeric Linear RNAs of Viroids Belonging to Pospiviroid and Hostuviroid Genera Are Infectious Regardless of Transcription Initiation Site and 5′-Terminal Structure
Authors: Hataya Tatsuji , Naoi Takashi
Published: November 2021

Infectious dimeric RNA transcripts are a powerful tool for reverse genetic analyses in viroid studies. However, the construction of dimeric cDNA clones is laborious and time consuming, especially in mutational analyses by in vitro mutagenesis. In this study, we developed a system to synthesize a precisely monomeric linear RNA that could be transcribed in vitro directly from the cDNA clones of four viroid species. The cDNA clones were constructed such that RNA transcription was initiated at the guanine nucleotide of a predicted processing and ligation site in the viroid replication process. Although the transcribed RNAs were considered to possess 5′-triphosphate and 3′-hydroxyl termini, the RNA transcripts were infectious even without in vitro modifications. Additionally, infectivity was detected in the monomeric RNA transcripts, in which transcription was initiated at guanine nucleotides distinct from the predicted processing/ligation site. Moreover, monomeric viroid RNAs bearing 5′-monophosphate, 5′-hydroxyl, or 5′-capped termini were found to be infectious. Northern blot analysis of the pooled total RNA of the plants inoculated with the 5′-terminal modified RNA of potato spindle tuber viroid (PSTVd) indicated that maximum PSTVd accumulation occurred in plants with 5′-monophosphate RNA inoculation, followed by the plants with 5′-triphosphate RNA inoculation. Our system for synthesizing an infectious monomeric linear viroid RNA from a cDNA clone will facilitate mutational analyses by in vitro mutagenesis in viroid research.
Endocannabinoid Metabolism and Traumatic Brain Injury
Authors: Zhu Dexiao , Gao Fei , Chen Chu
Published: November 2021

Traumatic brain injury (TBI) represents a major cause of morbidity and disability and is a risk factor for developing neurodegenerative diseases, including Alzheimer’s disease (AD). However, no effective therapies are currently available for TBI-induced AD-like disease. Endocannabinoids are endogenous lipid mediators involved in a variety of physiological and pathological processes. The compound 2-arachidonoylglycerol (2-AG) is the most abundant endocannabinoid with profound anti-inflammatory and neuroprotective properties. This molecule is predominantly metabolized by monoacylglycerol lipase (MAGL), a key enzyme degrading about 85% of 2-AG in the brain. Studies using animal models of inflammation, AD, and TBI provide evidence that inactivation of MAGL, which augments 2-AG signaling and reduces its metabolites, exerts neuroprotective effects, suggesting that MAGL is a promising therapeutic target for neurodegenerative diseases. In this short review, we provide an overview of the inhibition of 2-AG metabolism for the alleviation of neuropathology and the improvement of synaptic and cognitive functions after TBI.
Interfacial Microstructure and Corrosion Behaviour of Mild Steel Coated with Alumina Nanoparticles Doped Tin Composite via Direct Tinning Route
Authors: Alghamdi Abdulaziz S. , Abdel Halim K. S. , Amin Mohammed A. , Alshammari Abdullah S. , Fathy Naglaa , Ramadan Mohamed
Published: November 2021

The improvement of the surface properties of ferrous metallic materials has become a crucial criterion for advanced engineering applications. The interfacial microstructure and corrosion behaviour of mild steel coated with alumina nanoparticles doped in tin composite using the direct tinning technique were investigated. A coating layer of tin composite containing different loads of Al2O3 nanoparticles (0.25 wt.%, 0.50 wt.%, 1.00 wt.% and 1.5 wt.%) was prepared and directly deposited on a mild steel substrate. This type of a direct tinning process is considered to be a simple and low-cost route for protecting metallic materials from corrosion. It was found that the thickness of both the composite layer and Fe-Sn intermetallic layer at the coated interfaces was highly affected by the presence of alumina nanoparticles that effectively inhibit the diffusion of Sn atoms into the Fe substrate. For the samples coated with lower content of alumina nanoparticles (0.25 wt.% and 0.50 wt.%), the thickness of the Fe-Sn intermetallic coating (IMC) layer is decreased due to Fe-Sn IMC suppression. Otherwise, for the addition of more alumina nanoparticles (1.00 wt.% and 1.50 wt.%), the thickness of the Fe-Sn IMC layer is slightly increased because of nanoparticle’s agglomeration and flotation. It can be reported that the presence of alumina nanoparticles in the coating layer improves, to a great extent, the corrosion resistance of Sn-composites surface on mild steel substrates. Although the tin composite coating layer with a high quantity of alumina nanoparticles (1.0 wt.%) exhibited better corrosion resistance than the other tested samples, such nanoparticle additions have become increasingly difficult to obtain. It was observed that the Al2O3 nanoparticles agglomeration and flotation that were detected in the coating surface may be related to high fraction nanoparticles loading and to the difference in the gravity for Sn and Al2O3 nanoparticles. However, based on our investigation, a coating layer that contains 0.50 wt.% alumina nanoparticles is highly recommended for achieving long lasting and high-performance corrosion resistance for coated mild steel with minimal coating layer defects.
Optical Characterization of H-Free a-Si Layers Grown by rf-Magnetron Sputtering by Inverse Synthesis Using Matlab: Tauc–Lorentz–Urbach Parameterization
Authors: Márquez Emilio , Ruíz-Pérez Juan J. , Ballester Manuel , Márquez Almudena P. , Blanco Eduardo , Minkov Dorian , Ruano Susana M. Fernández , Saugar Elias
Published: November 2021

Several, nearly-1-µm-thick, pure, unhydrogenated amorphous-silicon (a-Si) thin layers were grown at high rates by non-equilibrium rf-magnetron Ar-plasma sputtering (RFMS) onto room-temperature low-cost glass substrates. A new approach is employed for the optical characterization of the thin-layer samples, which is based on some new formulae for the normal-incidence transmission of such a samples and on the adoption of the inverse-synthesis method, by using a devised Matlab GUI environment. The so-far existing limiting value of the thickness-non-uniformity parameter, Δd, when optically characterizing wedge-shaped layers, has been suppressed with the introduction of the appropriate corrections in the expression of transmittance. The optical responses of the H-free RFMS-a-Si thin films investigated, were successfully parameterized using a single, Kramers–Krönig (KK)-consistent, Tauc–Lorentz oscillator model, with the inclusion in the model of the Urbach tail (TLUC), in the present case of non-hydrogenated a-Si films. We have also employed the Wemple–DiDomenico (WDD) single-oscillator model to calculate the two WDD dispersion parameters, dispersion energy, Ed, and oscillator energy, Eso. The amorphous-to-crystalline mass-density ratio in the expression for Ed suggested by Wemple and DiDomenico is the key factor in understanding the refractive index behavior of the a-Si layers under study. The value of the porosity for the specific rf-magnetron sputtering deposition conditions employed in this work, with an Ar-pressure of ~4.4 Pa, is found to be approximately 21%. Additionally, it must be concluded that the adopted TLUC parameterization is highly accurate for the evaluation of the UV/visible/NIR transmittance measurements, on the H-free a-Si investigated. Finally, the performed experiments are needed to have more confidence of quick and accurate optical-characterizations techniques, in order to find new applications of a-Si layers in optics and optoelectronics.
Optimization Model of Engineering Specifications Based on Grey Quality Gain-Loss Function
Authors: Wang Bo , Yang Qi , Liu Chen , Li Qikai , Nie Xiangtian
Published: November 2021

In view of the fact that the target values of some quality characteristics are grey, the grey quality gain-loss function model was applied in the analysis of the quality characteristics. At the same time, based on the analysis of engineering specifications and process capability, an optimization model of engineering specifications was proposed to minimize the expected total loss of each product and maximize the expected compensation with inspection costs, scrap costs and grey quality gain-loss into consideration. The optimal engineering specification can be obtained by using the optimization model. Through the example analysis and its application in dam concrete construction, the practicability of the model is verified, which provides an important reference for the research of the new theory of dam concrete construction quality control.
Antiarthritic Activities of Herbal Isolates: A Comprehensive Review
Authors: Jain Shweta , Vaidya Ankur , Gupta Pawan Kumar , Rosenholm Jessica M. , Bansal Kuldeep K.
Published: November 2021

Numerous plant isolates with therapeutic properties, such as antimicrobial, antiinflammatory, antiviral, antimalarial, antiarthritic (AA), hepatoprotective, cardiotonic, and so forth, are reported in the literature. Usually, medicinal plants are widely used, and assumed to be safe and cheaper alternatives to chemically synthesized drugs. However, they are not regulated for potency and purity, and thus care must be taken for their safe use. In this review, we aimed to compile all of the herbal isolates possessing AA properties, including alkaloids (montanine, 3-acetylaconitine, sanguinarine, jatrorrhizine hydrochloride, and piperine), terpenoids (eugenol, nimbolide, bartogenic acid, cannabidiol, and curcumin), and flavonoids (quercetin, resveratrol, kaempferol, chebulanin, ellagic acid, rosmarinic acid, gallic acid, chlorogenic acid, ferulic acid, and brazilin). These isolates act through numerous pharmacological mechanisms such as inhibiting cytokines, chemokines, or matrix metalloproteinase, etc., to demonstrate AA activity. Animal models utilized for assessing the AA properties of these isolates, including adjuvant-induced arthritis mouse models, are also discussed. Furthermore, nanotechnology-based approaches to deliver these isolates are also reviewed, which have shown improved therapeutic efficacy of isolated compounds.
Integration of Fluorescent, NV-Rich Nanodiamond Particles with AFM Cantilevers by Focused Ion Beam for Hybrid Optical and Micromechanical Devices
Authors: Ficek Mateusz , Głowacki Maciej J. , Gajewski Krzysztof , Kunicki Piotr , Gacka Ewelina , Sycz Krystian , Mrózek Mariusz , Wojciechowski Adam M. , Gotszalk Teodor P. , Gawlik Wojciech , Bogdanowicz Robert
Published: November 2021

In this paper, a novel fabrication technology of atomic force microscopy (AFM) probes integrating cantilever tips with an NV-rich diamond particle is presented. Nanomanipulation techniques combined with the focused electron beam-induced deposition (FEBID) procedure were applied to position the NV-rich diamond particle on an AFM cantilever tip. Ultrasonic treatment of nanodiamond suspension was applied to reduce the size of diamond particles for proper geometry and symmetry. The fabricated AFM probes were tested utilizing measurements of the electrical resistance at highly oriented pyrolytic graphite (HOPG) and compared with a standard AFM cantilever performance. The results showed novel perspectives arising from combining the functionalities of a scanning AFM with optically detected magnetic resonance (ODMR). In particular, it offers enhanced magnetometric sensitivity and the nanometric resolution.
Turbulence Intensity Characteristics of a Magnetoliquid Seal Interface in a Liquid Environment
Authors: Li Wangxu , Li Zhenggui , Wang Ziyue , Wu Feng , Xu Lianchen , Peng Shengyang
Published: November 2021

In a liquid environment, the turbulence intensity of the interfacial layer between the magnetic and sealing medium fluids in magnetic liquid seals directly affects the layer stability. Reducing the maximum turbulence intensity of the fluid interface layer effectively improves the stability of the magnetic fluid rotary seal. In this study, we simulated magnetic fluid sealing devices with different structures in liquid environments using the FLUENT software. The simulation results were verified through experimental analyses of the turbulence intensity at the sealing interface. The maximum turbulence intensity of the liquid interface layer increased with increasing shaft speed. At the same speed, the turbulence intensity was maximized at the shaft interface before gradually decreasing in a multistage linear pattern along the radial direction. A magnetic liquid seal with an optimized structure (OS) in the liquid environment was designed based on these results. The maximum turbulence intensity of the liquid interface layer in the OS was independent of the rotation speed and was more than 20% lower than that that in the traditional structure. These results provide a reference for designing magnetic liquid sealing devices.
An Ancient Egyptian Multilayered Polychrome Wooden Sculpture Belonging to the Museo Egizio of Torino: Characterization of Painting Materials and Design of Cleaning Processes by Means of Highly Retentive Hydrogels
Authors: Manfredda Nicole , Buscaglia Paola , Gallo Paolo , Borla Matilde , Aicardi Sara , Poggi Giovanna , Baglioni Piero , Nervo Marco , Scalarone Dominique , Borghi Alessandro , Re Alessandro , Guidorzi Laura , Giudice Alessandro Lo
Published: November 2021

This contribution focuses on the conservation of an Egyptian wooden sculpture (Inventory Number Cat. 745) belonging to the Museo Egizio of Torino in northwest Italy. A preliminary and interdisciplinary study of constituent painting materials and their layering is here provided. It was conducted by means of a multi-technique approach starting from non-invasive multispectral analysis on the whole object, and subsequently, on selected micro-samples. In particular, visible fluorescence induced by ultraviolet radiation (UVF), infrared reflectography (IRR) and visible--induced infrared luminescence were used on the whole object. The micro-samples were analysed by means of an optical microscope with visible and UV light sources, a scanning electron microscope (SEM) with an energy-dispersive X-ray spectrometer (EDX), Fourier transform infrared (FT-IR) spectrometer, pyrolysis-gas chromatography/mass spectrometer (Py-GC/MS) and micro-particle induced X-ray emission (PIXE). The characterization of the painting materials allowed the detection of Egyptian blue and Egyptian green, and also confirmed the pertinence of the top brown layer to the original materials, which is a key point to design a suitable surface treatment. In fact, due to the water sensitiveness of the original materials, only few options were available to perform cleaning operations on this artwork. To setup the cleaning procedure, we performed several preliminary tests on mockups using dry cleaning materials, commonly used to treat reactive surfaces, and innovative highly water retentive hydrogels, which can potentially limit the mechanical action on the original surface while proving excellent cleaning results. Overall, this study has proved fundamental to increase our knowledge on ancient Egyptian artistic techniques and contribute to hypothesize the possible provenance of the artefact. It also demonstrated that polyvinyl alcohol-based retentive gels allow for the safe and efficient cleaning of extremely water sensitive painted surfaces, as those typical of ancient Egyptian artefacts.
A Porous Media Leakage Model of Contact Mechanical Seals Considering Surface Wettability
Authors: Bei Guangyao , Ma Chenbo , Sun Jianjun , Ni Xingya , Ma Yafei
Published: November 2021

The fluid leakage channel found in contact mechanical seals belongs to the microchannel category. Thus, upon further inspection, the influence of surface wettability and other factors neglected in previous studies becomes obvious. The porous leakage model of contact mechanical seals considering the surface wettability presented in this paper was based on the Cassie model and slip theory. The variations of the microchannel slip length and the velocity under various wettability conditions were studied and the relationship between the slip length and the apparent contact angle was established. Moreover, using porous media theory, the theoretical model of the leakage rate in contact mechanical seals considers the surface wettability depending on various parameters. The observed parameters included the surface contact angle, sealing medium pressure, viscosity coefficient, fractal dimension, and maximum pore diameter. The simulation results obtained using the proposed model have shown that the leakage rate increases with the increase of the apparent contact angle. Particularly when the contact pressure is small, the influence of the surface wettability is more significant. Furthermore, the leakage rate results obtained via the proposed model were compared to those of existing models. The comparison confirmed that the proposed model is applicable and that the necessity of considering wettability significantly affects the leakage rate calculation accuracy. The proposed model lays a foundation for further improving the calculation accuracy, making it easier for both the researchers and practitioners to suppress the leakage in contact mechanical seals.
Effect of Annealing on Surface Morphology and Structure of Nickel Coatings Deposited from Deep Eutectic Solvents
Authors: Winiarski Juliusz , Niciejewska Anna , Tylus Włodzimierz , Winiarska Katarzyna , Pazgan Karolina , Szczygieł Bogdan
Published: November 2021

Nanocrystalline nickel coatings deposited on a copper base material from DES made of choline chloride and ethylene glycol in 1:2 molar ratio containing 1 mol dm−3 NiCl2⋅6H2O were modified through post-deposition heat treatment at the temperatures from 100 to 400 °C. As-deposited coatings were composed of spheroidal agglomerates with the size of several hundred nanometers interspersed with lamellar crystals, but after annealing at 300 °C and 400 °C only single nano-sized plates embedded in a granular and porous layer remained. As the temperature of the heat treatment increased from 100 °C to 400 °C, the mean crystallite size increased from 13 to 35 nm. The change in crystallite size was accompanied by a change in microhardness, the maximum value of which was measured for the annealed coating at 200 °C. As a result of heat treatment, coatings were gradually covered by a layer of oxidized nickel species. XPS analyses showed that NiOOH and Ni(OH)2 dominated among them. Above 200 °C the share of these compounds began to decline in the face of the increasing share of NiO. This, in turn, clearly translated into a deterioration of the corrosion resistance of Ni coatings annealed at 300 °C, and especially at 400 °C, during exposure in 0.05 mol dm−3 NaCl solution.
Investigation of the Optimum Mg Doping Concentration in p-Type-Doped Layers of InGaN Blue Laser Diode Structures
Authors: Onwukaeme Chibuzo , Ryu Han-Youl
Published: November 2021

In GaN-based laser diode (LD) structures, Mg doping in p-type-doped layers has a significant influence on the device performance. As the doping concentration increases, the operation voltage decreases, whereas the output power decreases as a result of increased optical absorption, implying that optimization of the Mg doping concentration is required. In this study, we systematically investigated the effect of the Mg doping concentration in the AlGaN electron-blocking layer (EBL) and the AlGaN p-cladding layer on the output power, forward voltage, and wall-plug efficiency (WPE) of InGaN blue LD structures using numerical simulations. In the optimization of the EBL, an Al composition of 20% and an Mg doping concentration of 3 × 1019 cm−3 exhibited the best performance, with negligible electron leakage and a high WPE. The optimum Mg concentration of the p-AlGaN cladding layer was found to be ~1.5 × 1019 cm−3, where the maximum WPE of 38.6% was obtained for a blue LD with a threshold current density of 1 kA/cm2 and a slope efficiency of 2.1 W/A.