bluuebunny/crossref_metadata_2025 huggingface dataset:
Abrus precatorius leaf bioactives: invivo anti-diabetes mellitus type-1 activity, PPARA and SCD as novel targets
Authors: Taofeek Oluwaseun O. , Oyewole Olawale M. , Sulaimon Lateef A. , Sanusi Sabur Olalekan , Akinnuoye Precious O. , Dogara Dennis V. , Ajala Faruq O. , Joda Eniola O. , Afolabi Samuel O. , Adamu Jumai E. , Aminu Muibat A. , Olorundare Florence T.
Published: January 2024

Abrus precatorius (AP) is a medicinal plant rarely studied for its beneficial effects against diabetes mellitus (DM) type-1. We estimated DM type-1 related parameters—total protein (TP), direct bilirubin (DB), urea, creatinine, alanine transaminase (ALT), aspartate transaminase (AST), alkaline phosphatase (ALP) and serum glucose (SG) after treatment with methanol extracts of AP leaves (APMLE) for 21 days, followed by histopathological analysis of kidney and liver sections. AP leaf bioactives (ALPBs) were collected from GCMS fractions, database, and literature; common targets were intersected with annotated DM type-1 genes from the experimental GSE14503 microarray dataset and genecard database. Overlapping differentially expressed genes were collected, and their protein–protein interaction network was analyzed using various bioinformatics tools: Enrichr, SRplot, GSEA, and Cytoscape, to provide insight into the potential molecular basis of APLBs in DM-type-1. 15 compounds were identified from GCMS analysis of APMLE. Antidiabetic potential of APMLE was observed with significant (p < 0.05) normalization of SG, TP, DB, ALT, AST, ALP, urea and creatinine while hepatorenal photomicrographs indicated moderate safety. Erucic acid, oleic acid, phytol and stigmasterol interacted with 25 type-1 DM biomarkers enriched in lipid and prostaglandin metabolic processes, neuroactive ligand receptor interaction, PPAR signaling pathway, diabetic cardiomyopathy, and cAMP signaling pathway. Furthermore, PPARalpha (peroxisome proliferator-activated alpha) and SCD (stearoyl-coenzyme A desaturase) were revealed as core biotargets interacting with APLBs via hydrogen bond, hydrophobic interaction, and van der Waals forces from the docking study. Future interests may provide additional experimental data into the mechanisms by which APLBs elicit this remarkable ability.
Grinding preparation of 2D/2D g-C3N4/BiOCl with oxygen vacancy heterostructure for improved visible-light-driven photocatalysis
Authors: Hou Jianhua , Wang Haoyi , Qin Rongrong , Zhang Qikai , Wu Di , Hou Zhenhua , Yang Wei , Hussain Asif , Tahir Muhammad , Yin Weiqin , Zhang Yongcai , Wang Xiaozhi
Published: January 2024

A novel 2D/2D g-C3N4/BiOCl (CN/BOC) heterojunction photocatalyst was synthesized by grinding appropriate amounts of CN, Bi(NO3)3·5H2O, glacial acetic acid and KCl at room temperature. The porous CN nanosheets not only facilitate the in situ nucleation and growth of BOC to form thin nanosheets and constitute an intimate contact interface, but also introduce more oxygen vacancies (OVs) in the grinding process. The 2D/2D CN/BOC heterojunction had a good interface and generates a built-in electric field, which can improve the separation of e− and h+. The synergistic effect of the heterostructure and OVs made the photocatalyst have significantly better performance than CN and BOC alone under visible light. The most efficient CN/BOC-5 could achieve a tetracycline (TC) degradation rate of 89.8% within 2 h, which was 1.9 and 1.2 times faster than CN and BOC, respectively. It catalyzed the reduction of CO2 to CO at a rate of 2.00 μ mol h−1 g−1, 1.1 and 3.2 times faster than CN and BOC, respectively. The mechanism for the photocatalysis of CN/BOC-5 was revealed. It was confirmed that the efficiency of photo-induced carrier separation and visible-light photo-absorption were both considerably increased by the synergistic interaction between OVs and 2D/2D heterojunction. This research may open up new possibilities for the logical design of efficient photocatalysts through combining 2D/2D heterojunctions with OVs for environmental remediation.

Graphical Abstract
Facile preparation of NiFe2O4/biochar composite adsorbent for efficient adsorption removal of antibiotics in water
Authors: Liang Huagen , Zhu Chenxi , Wang Anhu , Chen Fu
Published: January 2024

The removal of antibiotics by adsorption was considered to be a cheap and efficient treatment method. Herein, magnetic NiFe2O4/biochar (NFO/BC) composites were prepared by hydrothermal growth of nickel ferrite nanoparticles on sawdust derived biochar. It was found that NFO/BC composites had developed pore structure, rich oxygen-containing functional groups, and strong magnetism. The maximum adsorption capacity of the prepared magnetic composite for tetracycline (TC) was 420.41 mg g−1. The results of adsorption thermodynamics and adsorption kinetics showed that the adsorption process is a spontaneous process, which conforms to Langmuir model and pseudo second-order kinetic model. The influence experiment of pH and ionic strength confirmed that electrostatic interaction and hydrogen bonding are the key factors affecting the adsorption process. Additionally, pore filling and π-π interaction also existed in the adsorption process of tetracycline. This recyclable magnetic composite provides a feasible research idea for the efficient removal of antibiotics from water.

Graphical Abstract
A review of the de novo domestication and cultivation of edible Australian native plants as food crops
Authors: George Nicholas Alexander , Coorey Ranil , Dixon Kingsley , Bennett Sarita Jane
Published: January 2024

Australia has a diverse and unique native flora with thousands of edible plant taxa, many of which are wild relatives of important food crops. These have the potential to diversify and improve the sustainability of Australian farming systems. However, the current level of domestication and cultivation of Australian plants as food crops is extremely limited by global standards. This review examines the current status and potential for future de novo domestication and large-scale cultivation of Australian plants as food crops. This is done in the context of international new crop development and factors that impact the success or failure of such efforts. Our review finds considerable potential for native Australian plants to be developed as food crops, but the industry faces several significant challenges. The current industry focuses on niche food markets that are susceptible to oversupply. It also suffers from inconsistent quantity and quality of product, which is attributed to a reliance on wild harvesting and the cultivation of unimproved germplasm. More active cultivation is necessary for industry growth, but attempts have historically failed due to poorly adapted germplasm and a lack of agronomic information. The de novo domestication and large-scale cultivation of Australian plants as food crops will require an investment in publicly supported multidisciplinary research and development programmes. Research programmes must prioritize the exploration of plants throughout Australia and the collection and evaluation of germplasm. Programmes must also seek to engage relevant stakeholders, pursue participatory research models and provide appropriate engagement and benefit-sharing opportunities with Indigenous Australian communities.
A queueing system with an SIR-type infection
Authors: Lefèvre Claude , Simon Matthieu
Published: January 2024

We consider the propagation of a stochastic SIR-type epidemic in two connected populations: a relatively small local population of interest which is surrounded by a much larger external population. External infectives can temporarily enter the small population and contribute to the spread of the infection inside this population. The rules for entry of infectives into the small population as well as their length of stay are modeled by a general Markov queueing system. Our main objective is to determine the distribution of the total number of infections within both populations. To do this, the approach we propose consists of deriving a family of martingales for the joint epidemic processes and applying classical stopping time or convergence theorems. The study then focuses on several particular cases where the external infection is described by a linear branching process and the entry of external infectives obeys certain specific rules. Some of the results obtained are illustrated by numerical examples.
The explorer king: southern report of the king penguin (Aptenodytes patagonicus) in the Antarctic Peninsula
Authors: Libertelli Marcela M. , Orgeira Jose L. , Alvarez Facundo
Published: January 2024

A juvenile king penguin (Aptenodytes patagonicus) was sighted at San Martín Station, Marguerite Bay, west of the Antarctic Peninsula (68°07'S, 67°08'W) on 3 February 2020. The animal was apparently healthy. It was uninjured, moving freely between the station buildings. It remained in the area until 27 March, when it was last seen. Numerous king penguin records have been reported in recent years, mostly in the South Shetland Islands. Two chicks have even been recorded hatching on these islands, but there is currently no evidence that king penguins have raised a chick to emancipation successfully. Here we present the most southerly known record of king penguins, the only one farther south than the Antarctic Circle. Coupled with observations from other parts of Antarctica, the information presented here supports previous suggestions by other authors of a southwards expansion of this species specifically in the Antarctic Peninsula region. The presence of this species at numerous Antarctic localities suggests that the known distribution of this penguin could change in the near future in response to climate change.
Northward migration of Red Knots Calidris canutus rufa and environment connectivity of southern Brazil to Canada
Authors: de Brum Antônio Coimbra , Finger Júlia Victória Grohmann , Lathrop Richard G. , Feigin Stephanie , Smith Joseph , Niles Lawrence Joseph , Petry Maria Virginia
Published: January 2024

During their northward migration, Red Knots Calidris canutus rufa stop at the Lagoa do Peixe National Park in the extreme south of Brazil to build up fat reserves for their journey to their Canadian breeding grounds. We tracked five Red Knots with PinPoint Argos-75 GPS transmitters to investigate differences in migration strategies from this stopover. Tracked birds used two different routes: the Central Brazil route and the Brazilian Atlantic Coast route. One bird flew 8,300 km straight from Lagoa do Peixe to the Delaware Bay (USA). Another bird stopped in Maranhão (north-east Brazil) and a third one used a yet unknown environment for the species, the mouth of the Amazon River at Baía Santa Rosa, Brazil. These two birds made short flights, covering stretches of 1,600 km to 3,600 km between stop-overs, where they stayed from 4 to 18 days. Our study highlights the occurrence of intrapopulation variation in migratory strategies and reveals the connectivity of environments that are essential for the viability of rufa Red Knot populations.
Emerging trends: When can users trust GPT, and when should they intervene?
Authors: Church Kenneth
Published: January 2024

Usage of large language models and chat bots will almost surely continue to grow, since they are so easy to use, and so (incredibly) credible. I would be more comfortable with this reality if we encouraged more evaluations with humans-in-the-loop to come up with a better characterization of when the machine can be trusted and when humans should intervene. This article will describe a homework assignment, where I asked my students to use tools such as chat bots and web search to write a number of essays. Even after considerable discussion in class on hallucinations, many of the essays were full of misinformation that should have been fact-checked. Apparently, it is easier to believe ChatGPT than to be skeptical. Fact-checking and web search are too much trouble.
The Effect of Stress on Paleomagnetic Signals: A Micromagnetic Study of Magnetite's Single‐Vortex Response
Authors: North T. L. , Muxworthy A. R. , Williams W. , Mitchell T. M. , Collins G. S. , Davison T. M.
Published: January 2024

In this study we use micromagnetic modeling to show that the magnetizations of magnetically single‐vortex particles rotate toward the stress axis on the application of a differential compression stress. This is the exact opposite response to magnetically single‐domain particles, which previously provided the theoretical underpinning of the effect of stress on the magnetic signals of rocks. We show that the magnetization directions of single‐vortex and equant single‐domain particles are altered by much lower stresses than previously predicted, c.f., 100 versus 1,000 MPa; where a change in magnetization is defined as a rotation of >3° after the removal of stress. The magnetization intensity of assemblages also drops by ∼20%–30% on the application and removal of stress of ∼100 MPa. Given that single‐vortex particles are now thought to dominate the magnetization of most rocks, future studies should account for paleomagnetic directional uncertainties and potential underestimation of the ancient magnetic field intensity.
A Machine Learning Augmented Data Assimilation Method for High‐Resolution Observations
Authors: Howard Lucas J. , Subramanian Aneesh , Hoteit Ibrahim
Published: January 2024

The accuracy of initial conditions is an important driver of the forecast skill of numerical weather prediction models. Increases in the quantity of available measurements, particularly high‐resolution remote sensing observational data products from satellites, are valuable inputs for improving those initial condition estimates. However, the traditional data assimilation methods for integrating observations into forecast models are computationally expensive. This makes incorporating dense observations into operational forecast systems challenging, and it is often prohibitively time‐consuming. Additionally, high‐resolution observations often have correlated observation errors which are difficult to estimate and create problems for assimilation systems. As a result, large quantities of data are discarded and not used for state initialization. Using the Lorenz‐96 system for testing, we demonstrate that a simple machine learning method can be trained to assimilate high‐resolution data. Using it to do so improves both initial conditions and forecast accuracy. Compared to using the Ensemble Kalman Filter with high‐resolution observations ignored, our augmented method has an average root‐mean‐squared error reduced by 37%. Ensemble forecasts using initial conditions generated by the augmented method are more accurate and reliable at up to 10 days of forecast lead time.
Prognostic impact of CEBPA mutational subgroups in adult AML
Authors: Georgi Julia-Annabell , Stasik Sebastian , Kramer Michael , Meggendorfer Manja , Röllig Christoph , Haferlach Torsten , Valk Peter , Linch David , Herold Tobias , Duployez Nicolas , Taube Franziska , Middeke Jan Moritz , Platzbecker Uwe , Serve Hubert , Baldus Claudia D. , Muller-Tidow Carsten , Haferlach Claudia , Koch Sarah , Berdel Wolfgang E. , Woermann Bernhard J. , Krug Utz , Braess Jan , Hiddemann Wolfgang , Spiekermann Karsten , Boertjes Emma L. , Hills Robert K. , Burnett Alan , Ehninger Gerhard , Metzeler Klaus , Rothenberg-Thurley Maja , Dufour Annika , Dombret Hervé , Pautas Cecile , Preudhomme Claude , Fenwarth Laurene , Bornhäuser Martin , Gale Rosemary , Thiede Christian
Published: January 2024

Despite recent refinements in the diagnostic and prognostic assessment of CEBPA mutations in AML, several questions remain open, i.e. implications of different types of basic region leucin zipper (bZIP) mutations, the role of co-mutations and the allelic state. Using pooled primary data analysis on 1010 CEBPA-mutant adult AML patients, a comparison was performed taking into account the type of mutation (bZIP: either typical in-frame insertion/deletion (InDel) mutations (bZIPInDel), frameshift InDel or nonsense mutations inducing translational stop (bZIPSTOP) or single base-pair missense alterations (bZIPms), and transcription activation domain (TAD) mutations) and the allelic state (single (smCEBPA) vs. double mutant (dmCEBPA)). Only bZIPInDel patients had significantly higher rates of complete remission and longer relapse free and overall survival (OS) compared with all other CEBPA-mutant subgroups. Moreover, co-mutations in bZIPInDel patients (e.g. GATA2, FLT3, WT1 as well as ELN2022 adverse risk aberrations) had no independent impact on OS, whereas in non-bZIPInDel patients, grouping according to ELN2022 recommendations added significant prognostic information. In conclusion, these results demonstrate bZIPInDel mutations to be the major independent determinant of outcome in CEBPA-mutant AML, thereby refining current classifications according to WHO (including all dmCEBPA and smCEBPA bZIP) as well as ELN2022 and ICC recommendations (including CEBPA bZIPms).
Tunnelling of electrons via the neighboring atom
Authors: Zhu Ming , Tong Jihong , Liu Xiwang , Yang Weifeng , Gong Xiaochun , Jiang Wenyu , Lu Peifen , Li Hui , Song Xiaohong , Wu Jian
Published: January 2024

As compared to the intuitive process that the electron emits straight to the continuum from its parent ion, there is an alternative route that the electron may transfer to and be trapped by a neighboring ionic core before the eventual release. Here, we demonstrate that electron tunnelling via the neighboring atomic core is a pronounced process in light-induced tunnelling ionization of molecules by absorbing multiple near-infrared photons. We devised a site-resolved tunnelling experiment using an Ar-Kr+ ion as a prototype system to track the electron tunnelling dynamics from the Ar atom towards the neighboring Kr+ by monitoring its transverse momentum distribution, which is temporally captured into the resonant excited states of the Ar-Kr+ before its eventual releasing. The influence of the Coulomb potential of neighboring ionic cores promises new insights into the understanding and controlling of tunnelling dynamics in complex molecules or environment.
Targeted inhibition of the HNF1A/SHH axis by triptolide overcomes paclitaxel resistance in non-small cell lung cancer
Authors: Li Ling-bing , Yang Ling-xiao , Liu Lei , Liu Fan-rong , Li Alex H. , Zhu Yi-lin , Wen Hao , Xue Xia , Tian Zhong-xian , Sun Hong , Li Pei-chao , Zhao Xiao-gang
Published: January 2024

Paclitaxel resistance is associated with a poor prognosis in non-small cell lung cancer (NSCLC) patients, and currently, there is no promising drug for paclitaxel resistance. In this study, we investigated the molecular mechanisms underlying the chemoresistance in human NSCLC-derived cell lines. We constructed paclitaxel-resistant NSCLC cell lines (A549/PR and H460/PR) by long-term exposure to paclitaxel. We found that triptolide, a diterpenoid epoxide isolated from the Chinese medicinal herb Tripterygium wilfordii Hook F, effectively enhanced the sensitivity of paclitaxel-resistant cells to paclitaxel by reducing ABCB1 expression in vivo and in vitro. Through high-throughput sequencing, we identified the SHH-initiated Hedgehog signaling pathway playing an important role in this process. We demonstrated that triptolide directly bound to HNF1A, one of the transcription factors of SHH, and inhibited HNF1A/SHH expression, ensuing in attenuation of Hedgehog signaling. In NSCLC tumor tissue microarrays and cancer network databases, we found a positive correlation between HNF1A and SHH expression. Our results illuminate a novel molecular mechanism through which triptolide targets and inhibits HNF1A, thereby impeding the activation of the Hedgehog signaling pathway and reducing the expression of ABCB1. This study suggests the potential clinical application of triptolide and provides promising prospects in targeting the HNF1A/SHH pathway as a therapeutic strategy for NSCLC patients with paclitaxel resistance.
Designed allosteric protein logic
Authors: Plaper Tjaša , Merljak Estera , Fink Tina , Satler Tadej , Ljubetič Ajasja , Lainšček Duško , Jazbec Vid , Benčina Mojca , Stevanoska Sintija , Džeroski Sašo , Jerala Roman
Published: January 2024

The regulation of protein function by external or internal signals is one of the key features of living organisms. The ability to directly control the function of a selected protein would represent a valuable tool for regulating biological processes. Here, we present a generally applicable regulation of proteins called INSRTR, based on inserting a peptide into a loop of a target protein that retains its function. We demonstrate the versatility and robustness of coiled-coil-mediated regulation, which enables designs for either inactivation or activation of selected protein functions, and implementation of two-input logic functions with rapid response in mammalian cells. The selection of insertion positions in tested proteins was facilitated by using a predictive machine learning model. We showcase the robustness of the INSRTR strategy on proteins with diverse folds and biological functions, including enzymes, signaling mediators, DNA binders, transcriptional regulators, reporters, and antibody domains implemented as chimeric antigen receptors in T cells. Our findings highlight the potential of INSRTR as a powerful tool for precise control of protein function, advancing our understanding of biological processes and developing biotechnological and therapeutic interventions.
Implementing focused echocardiography and AI-supported analysis in a population-based survey in Lesotho: implications for community-based cardiovascular disease care models
Authors: Firima Emmanuel , Gonzalez Lucia , Manthabiseng Molulela , Bane Matumaole , Lukau Blaise , Leigh Bailah , Kaufmann Beat A. , Weisser Maja , Amstutz Alain , Tromp Jasper , Labhardt Niklaus Daniel , Burkard Thilo
Published: January 2024

In settings where access to expert echocardiography is limited, focused echocardiography, combined with artificial intelligence (AI)-supported analysis, may improve diagnosis and monitoring of left ventricular hypertrophy (LVH). Sixteen nurses/nurse-assistants without prior experience in echocardiography underwent a 2-day hands-on intensive training to learn how to assess parasternal long axis views (PLAX) using an inexpensive hand-held ultrasound device in Lesotho, Southern Africa. Loops were stored on a cloud-drive, analyzed using deep learning algorithms at the University Hospital Basel, and afterwards confirmed by a board-certified cardiologist. The nurses/nurse-assistants obtained 756 echocardiograms. Of the 754 uploaded image files, 628 (83.3%) were evaluable by deep learning algorithms. Of those, results of 514/628 (81.9%) were confirmed by a cardiologist. Of the 126 not evaluable by the AI algorithm, 46 (36.5%) were manually evaluable. Overall, 660 (87.5%) uploaded files were evaluable and confirmed. Following short-term training of nursing cadres, a high proportion of obtained PLAX was evaluable using AI-supported analysis. This could be a basis for AI- and telemedical support in hard-to-reach areas with minimal resources.
Risk of COVID-19 death in adults who received booster COVID-19 vaccinations in England
Authors: Ward Isobel L. , Robertson Chris , Agrawal Utkarsh , Patterson Lynsey , Bradley Declan T. , Shi Ting , de Lusignan Simon , Hobbs F. D. Richard , Sheikh Aziz , Nafilyan Vahé
Published: January 2024

The emergence of the COVID-19 vaccination has been critical in changing the course of the COVID-19 pandemic. To ensure protection remains high in vulnerable groups booster vaccinations in the UK have been targeted based on age and clinical vulnerabilities. We undertook a national retrospective cohort study using data from the 2021 Census linked to electronic health records. We fitted cause-specific Cox models to examine the association between health conditions and the risk of COVID-19 death and all-other-cause death for adults aged 50-100-years in England vaccinated with a booster in autumn 2022. Here we show, having learning disabilities or Down Syndrome (hazard ratio=5.07;95% confidence interval=3.69-6.98), pulmonary hypertension or fibrosis (2.88;2.43-3.40), motor neuron disease, multiple sclerosis, myasthenia or Huntington’s disease (2.94, 1.82-4.74), cancer of blood and bone marrow (3.11;2.72-3.56), Parkinson’s disease (2.74;2.34-3.20), lung or oral cancer (2.57;2.04 to 3.24), dementia (2.64;2.46 to 2.83) or liver cirrhosis (2.65;1.95 to 3.59) was associated with an increased risk of COVID-19 death. Individuals with cancer of the blood or bone marrow, chronic kidney disease, cystic fibrosis, pulmonary hypotension or fibrosis, or rheumatoid arthritis or systemic lupus erythematosus had a significantly higher risk of COVID-19 death relative to other causes of death compared with individuals who did not have diagnoses. Policy makers should continue to priorities vulnerable groups for subsequent COVID-19 booster doses to minimise the risk of COVID-19 death.
Atomic-scale observation of nucleation- and growth-controlled deformation twinning in body-centered cubic nanocrystals
Authors: Zhong Li , Zhang Yin , Wang Xiang , Zhu Ting , Mao Scott X.
Published: January 2024

Twinning is an essential mode of plastic deformation for achieving superior strength and ductility in metallic nanostructures. It has been generally believed that twinning-induced plasticity in body-centered cubic (BCC) metals is controlled by twin nucleation, but facilitated by rapid twin growth once the nucleation energy barrier is overcome. By performing in situ atomic-scale transmission electron microscopy straining experiments and atomistic simulations, we find that deformation twinning in BCC Ta nanocrystals larger than 15 nm in diameter proceeds by reluctant twin growth, resulting from slow advancement of twinning partials along the boundaries of finite-sized twin structures. In contrast, reluctant twin growth can be obviated by reducing the nanocrystal diameter to below 15 nm. As a result, the nucleated twin structure penetrates quickly through the cross section of nanocrystals, enabling fast twin growth via facile migration of twin boundaries leading to large uniform plastic deformation. The present work reveals a size-dependent transition in the nucleation- and growth-controlled twinning mechanism in BCC metals, and provides insights for exploiting twinning-induced plasticity and breaking strength-ductility limits in nanostructured BCC metals.
The gut microbiota modulate locomotion via vagus-dependent glucagon-like peptide-1 signaling
Authors: Lai Tzu-Ting , Tsai Yu-Hsuan , Liou Chia-Wei , Fan Ching-Hsiang , Hou Yu-Tian , Yao Tzu-Hsuan , Chuang Hsiao-Li , Wu Wei-Li
Published: January 2024

Locomotor activity is an innate behavior that can be triggered by gut-motivated conditions, such as appetite and metabolic condition. Various nutrient-sensing receptors distributed in the vagal terminal in the gut are crucial for signal transduction from the gut to the brain. The levels of gut hormones are closely associated with the colonization status of the gut microbiota, suggesting a complicated interaction among gut bacteria, gut hormones, and the brain. However, the detailed mechanism underlying gut microbiota-mediated endocrine signaling in the modulation of locomotion is still unclear. Herein, we show that broad-spectrum antibiotic cocktail (ABX)-treated mice displayed hypolocomotion and elevated levels of the gut hormone glucagon-like peptide-1 (GLP-1). Blockade of the GLP-1 receptor and subdiaphragmatic vagal transmission rescued the deficient locomotor phenotype in ABX-treated mice. Activation of the GLP-1 receptor and vagal projecting brain regions led to hypolocomotion. Finally, selective antibiotic treatment dramatically increased serum GLP-1 levels and decreased locomotion. Colonizing Lactobacillus reuteri and Bacteroides thetaiotaomicron in microbiota-deficient mice suppressed GLP-1 levels and restored the hypolocomotor phenotype. Our findings identify a mechanism by which specific gut microbes mediate host motor behavior via the enteroendocrine and vagal-dependent neural pathways.
Comprehensive investigation of quantum oscillations in semimetal using an ac composite magnetoelectric technique with ultrahigh sensitivity
Authors: Zhang Long , Wang Tianyang , Zhang Yugang , Liu Shuang , Sun Yuping , Zhou Xiaoyuan , Sun Young , He Mingquan , Wang Aifeng , Luo Xuan , Chai Yisheng
Published: January 2024

Quantum oscillation (QO), a physical phenomenon that reflects the characteristics of the Fermi surface and transport fermions, has been extensively observed in metals and semimetals through various approaches, like magnetostriction, magnetization, resistivity, and thermoelectric power. However, only limited oscillation frequencies can be revealed by the aforementioned methods, particularly in semimetals with intricate Fermi pockets and associated magnetic breakdown phenomena. In this paper, we present the application of an ac composite magnetoelectric (ME) technique to measure the QOs of a topological nodal-line semimetal, ZrSiS, which possesses six fundamental QO frequencies. By employing the ME technique with a maximum magnetic field of 13 T and a minimum temperature of 2 K, we are able to capture all the fundamental frequencies and most of the permissible magnetic breakdown frequencies. Remarkably, a series of magnetic breakdown frequencies around 8000 T were revealed even in a magnetic field as low as 7.5 T. These findings highlight the ME technique as an ultrahigh-sensitive tool for studying Dirac Fermions and other topological semimetals with complex Fermi surfaces.
A systematic review and meta-analysis of transdiagnostic cognitive behavioural therapies for emotional disorders
Authors: Schaeuffele Carmen , Meine Laura E. , Schulz Ava , Weber Maxi C. , Moser Angela , Paersch Christina , Recher Dominique , Boettcher Johanna , Renneberg Babette , Flückiger Christoph , Kleim Birgit
Published: January 2024

Transdiagnostic cognitive behavioural psychotherapy (TD-CBT) may facilitate the treatment of emotional disorders. Here we investigate short- and long-term efficacy of TD-CBT for emotional disorders in individual, group and internet-based settings in randomized controlled trials (PROSPERO CRD42019141512). Two independent reviewers screened results from PubMed, MEDLINE, PsycINFO, Google Scholar, medRxiv and OSF Preprints published between January 2000 and June 2023, selected studies for inclusion, extracted data and evaluated risk of bias (Cochrane risk-of-bias tool 2.0). Absolute efficacy from pre- to posttreatment and relative efficacy between TD-CBT and control treatments were investigated with random-effects models. Of 56 identified studies, 53 (6,705 participants) were included in the meta-analysis. TD-CBT had larger effects on depression (g = 0.74, 95% CI = 0.57–0.92, P < 0.001) and anxiety (g = 0.77, 95% CI = 0.56–0.97, P < 0.001) than did controls. Across treatment formats, TD-CBT was superior to waitlist and treatment-as-usual. TD-CBT showed comparable effects to disorder-specific CBT and was superior to other active treatments for depression but not for anxiety. Different treatment formats showed comparable effects. TD-CBT was superior to controls at 3, 6 and 12 months but not at 24 months follow-up. Studies were heterogeneous in design and methodological quality. This review and meta-analysis strengthens the evidence for TD-CBT as an efficacious treatment for emotional disorders in different settings.
Chromosome-scale Genome assembly of the critically endangered White-eared Night-Heron (Gorsachius magnificus)
Authors: Zheng Chenqing , Chen Qing , Huang Shiguo , Song Weizhen , Chen Guoling , Lin Hongzhou , Xu Chunsheng , Qian Xiran , Cheng Yachang , Jiang Aiwu , Fan Zhongyong , Liu Yang
Published: January 2024

The White-eared Night-Heron (Gorsachius magnificus, G. magnificus) is a critically endangered heron that is very poorly known and only found in southern China and northern Vietnam, with an estimated population of 250 to 999 mature individuals. However, the lack of a reference genome has hindered the implementation of conservation management efforts. In this study, we present the first high-quality chromosome-scale reference genome, which was assembled by integrating PacBio long-reads sequencing, Illumina paired-end sequencing, and Hi-C technology. The genome has a total length of 1.176 Gb, with a scaffold N50 of 84.77 Mb and a contig N50 of 18.46 Mb. Utilizing Hi-C data, we anchored 99.89% of the scaffold sequences onto 29 pairs of chromosomes. Additionally, we identified 18,062 protein-coding genes in the genome, with 95.00% of which were functionally annotated. Notably, BUSCO assessment confirmed the presence of 97.2% of highly conserved Aves genes within the genome. This chromosome-level genome assembly and annotation will be valuable for future investigating the G. magnificus’s evolutionary adaptation and conservation.
A detailed database of sub-annual Spanish demographic statistics: 2005–2021
Authors: Lledó Josep , Pavía Jose M.
Published: January 2024

The big data revolution has made it possible to collect, transmit and exploit huge amounts of data. The potential this offer for data analysis, however, clashes with the limitations imposed by laws on protection of personal data. This paper details a new database (DEMOSPA0521) made after processing and summarising more than 868 million demographic records from Spain, corresponding to a period of seventeen years (2005–2021). DEMOSPA0521 is composed of fifteen files: a group of (monthly and daily moving averages) datasets derived from population stocks and a collection of (daily, monthly and quarterly) datasets obtained from population, death, migration and birth statistics. The intra-annual distributions were calculated by exploiting both the temporal dimensions of age and calendar. DEMOSPA0521 also includes eleven R-Code files that enables the summary datasets to be derived from the raw microdata. DEMOSPA0521 can be used to confirm established results and employed to answer new research questions.
Co-roosting relationships are consistent across years in a bat maternity group
Authors: Sunga Julia , Humber Jessica , Broders Hugh G.
Published: January 2024

Long-lived, group living animals have the potential to form multiyear relationships. In some temperate bat species, maternity groups break apart and rejoin both daily, as females depart to forage and select day roosts to use, and annually, as bats leave for and return from hibernation. Here, we investigated whether bats have persistent social preferences by testing whether relationships between dyads in a focal year could be predicted by previous years. We also hypothesized that experience influences social preferences and predicted that an individual’s age would influence its network position, while familiarity with bats of the same cohort would drive persistent social preferences. We quantified roost co-occurrence in little brown myotis (Myotis lucifugus) in Salmonier Nature Park, Newfoundland, Canada both within and among years. We found that roost co-occurrence patterns of previous years still had predictive value even when accounting for potential roost fidelity. However, we found no evidence that cohort familiarity or age explained any of the variation. Overall, we found long-term patterns of association in this temperate bat species that suggest levels of social complexity akin to other large mammal species.
A clinical study evaluating the combination of LISA and SNIPPV for the treatment of respiratory distress syndrome in preterm infants
Authors: Permall Dhivya Lakshmi , Zhang Yuhan , Li Hanyue , Guan Yafei , Chen Xiaoqing
Published: January 2024

To compare the therapeutic effect of less invasive surfactant administration (LISA) followed by synchronized nasal intermittent positive pressure ventilation (SNIPPV) and traditional intubate-Surfactant-Extubate (InSurE) strategy for the treatment of neonatal respiratory distress syndrome (NRDS). A single-center, non-randomized and single- blinded study Tertiary neonatal intensive care unit 89 infants enrolled were preterm with gestational age < 366/7 weeks and clinically diagnosed with neonatal RDS (NRDS) Interventions: 32 infants were assigned to the LISA + SNIPPV group and 57 infants to the InSurE + nCPAP group. No statistically significant differences were noted in the baseline characteristics of the enrolled infants. A lower proportion of infants developed BPD in the LISA + SNIPPV group compared to the InSurE + CPAP group [10 (31.25%) vs. 21 (36.84%), P > 0.05]; however, there was no statistically significant difference. The number needed to treat (NNT) with LISA + SNIPPV to prevent BPD development is 18. The mortality rate was not significant between our study arms [1 (3.13%) vs 2 (3.51%), P > 0.05]. There were no statistically significant differences in the durations (days) of MV [(12.18 ± 13.89) vs. (11.35 ± 11.61), P > 0.05], oxygen therapy [(35.03 ± 19.13) vs. (39.75 ± 17.91), P > 0.05] and re-intubation rates [(0.19 ± 0.40) vs. (0.21 ± 0.45), P > 0.05] between the two study groups. In terms of complications, the incidence of patent ductus arteriosus (PDA) [24 (75.00%) vs. 27 (47.37%), P < 0.05] was higher and a lower rate of disturbed liver function [1 (3.23%) vs. 19 (33.33%), P < 0.05] were observed in the LISA + SNIPPV group. Acid–base imbalances were reportedly significantly higher in the InSurE group (P < 0.05). No significant differences in other complications were noted. In the interventional group, FiO2 requirements were significantly lower up until the 3rd week of treatment [FiO2 at day 0, (30.75 ± 4.78) vs. (34.66 ± 9.83), P < 0.05; FiO2 at day 21, (25.32 ± 3.74) vs. (29.11 ± 8.17), P < 0.05], as was RSS on days 2 [(0.77 ± 0.38) vs. (1.94 ± 0.75), P < 0.05] and 3 [(0.66 ± 0.33) vs. (1.89 ± 0.82), P < 0.05] after treatment. Additionally, infants in the standard group had a significantly prolonged hospital stay (days) [(45.97 ± 16.93) vs. (54.40 ± 16.26), P < 0.05]. The combination of LISA and SNIPPV for NRDS can potentially lower the rate of BPD, FiO2 demand and shorten the length of hospitalization.
Superconductivity of barium with highest transition temperatures in metallic materials at ambient pressure
Authors: Mito Masaki , Tsuji Hiroki , Tajiri Takayuki , Nakamura Kazuma , Tang Yongpeng , Horita Zenji
Published: January 2024

Pressure-induced superconductivity often occurs following structural transition under hydrostatic pressure (PHP) but disappears after the pressure is released. In the alkali-earth metal barium, superconductivity appears after structural transformation from body-centered cubic structure to hexagonal-close-packed (hcp) structure at PHP = 5 GPa, and the superconducting transition temperature (Tc) reaches a maximum of 5 K at PHP = 18 GPa. Furthermore, by stabilizing the low-temperature phase at PHP ~ 30 GPa, Tc reached a higher level of 8 K. Herein, we demonstrate a significantly higher Tc superconductivity in Ba even at ambient pressure. This was made possible through severe plastic deformation of high-pressure torsion (HPT). In this HPT-processed Ba, we observed superconductivity at Tc = 3 K and Tc = 24 K in the quasi-stabilized hcp and orthorhombic structures, respectively. In particular, the latter Tc represents the highest value achieved at ambient pressure among single-element superconducting metals, including intermetallics. The phenomenon is attributed to a strained high-pressure phase, stabilized by residual strains generated from lattice defects such as dislocations and grain boundaries. Significantly, the observed Tc far exceeds predictions from DFT calculations under normal hydrostatic compressions. The study demonstrates the importance of utilizing high-pressure strained phases as quasi-stable superconducting states at ambient pressure.
Pathological complete response to neoadjuvant chemotherapy may improve antitumor immune response via reduction of regulatory T cells in muscle-invasive bladder cancer
Authors: Ikarashi Daiki , Kitano Shigehisa , Tsuyukubo Takashi , Yamashita Makiko , Matsuura Tomohiko , Maekawa Shigekatsu , Kato Renpei , Kato Yoichiro , Kanehira Mitsugu , Takata Ryo , Sugai Tamotsu , Obara Wataru
Published: January 2024

The prognosis for patients who achieve a pathologic complete response in bladder cancer is excellent, but the association between their prognosis and the tumor microenvironment is unclear. We investigated the tumor immune microenvironment of those with pathological complete response after platinum-based neoadjuvant chemotherapy for cT2-4aN0M0 bladder cancer using multiplex fluorescence immunohistochemistry. Our retrospective study included 12 patients with pathological complete response who underwent radical cystectomy following neoadjuvant chemotherapy for cT2-4aN0M0 muscle-invasive bladder cancer. We assessed the density of several immune cell types in pretreatment and posttreatment tissues via multiplex fluorescence immunohistochemical analysis. The median age was 67 years; 10 patients were male. Nine (75%) and 3 (25%) patients were cT2 and cT3, respectively. The 5-year progression-free and overall survivals were 90% and 100%, respectively. The densities of regulatory T cells (Treg; CD3+CD4+FoxP3+ cell) were significantly decreased and almost disappeared in the tumor microenvironment of posttreatment tissue compared with pretreatment tissue. Other immune cells, such as effector T cells or M2 macrophages, were not significantly changed between posttreatment and pretreatment tissues. In pathological complete response, Tregs in the tumor immune microenvironment were significantly decreased after platinum-based chemotherapy for muscle-invasive bladder cancer. The temporary arresting of immune response in the tumor microenvironment may reflect a favorable prognosis due to the decrease of Tregs with tumor shrinkage and improve the host tumor immune response.
Effects of carbon source addition in rearing water on sediment characteristics, growth and health of cultured marron (Cherax cainii)
Authors: Nguyen Thi Thu Thuy , Foysal Md Javed , Gupta Sanjay Kumar , Tay Alfred , Fotedar Ravi , Gagnon Marthe Monique
Published: January 2024

Carbon sources are considered as critical input for the health and immunity of aquatic animals. The present study investigated the impact of different carbon sources on water quality parameters, carbon to nitrogen (C/N) ratio and microbial community in sediments, and health responses of marron (Cherax cainii) under laboratory conditions. Following one week of acclimation, 120 marron were randomly assigned to 12 experimental tanks. There were four treatments including one untreated control and three groups with carbon addition to maintain a C/N ratio of 12 maintained in culture water. Carbon supplementation groups included corn flour (CBC12), molasses (MBC12) and wheat flour (WBC12). At the end of the 60-day trial, MBC12 resulted in the highest sediment C/N ratio, followed by CBC12. Weight gain and specific growth rate were higher in MBC12, compared to control. The protease activity in marron hepatopancreas, total haemocyte count and lysozyme activity in haemolymph were highest in MBC12. Analysis of 16S rRNA sequence data of tank sediments revealed increased bacterial alpha diversity in MBC12 and WBC12. Proteobacteria was the most abundant phylum in MBC12 (88.6%), followed by control (82.4%) and CBC12 (72.8%). Sphingobium and Novosphingobium were the most abundant genera in control and MBC12 groups, respectively. Higher Aeromonas abundance in CBC12 and Flavobacterium in WBC12 were observed. Overall results indicated that MBC12 led to improved water quality, retaining high C/N ratio and enriched the bacterial populations in sediments resulting in improved growth and immune performance of marron.
Raman spectra simulation of antiplatelet drug-platelet interaction using DFT
Authors: Kundalevich Anna , Kapitunova Anastasia , Berezin Kirill , Zyubin Andrey , Moiseeva Ekaterina , Rafalskiy Vladimir , Samusev Ilia
Published: January 2024

The paper reflects the results of molecular docking and mathematical DFT simulation for antiplatelet drugs and the target platelet receptor/ferment interaction in the limited area. The results of Raman spectra simulation are implemented and obtained from the interaction of the clopidogrel metabolite of the P2Y12 receptor. The interaction of aspirin with the COX-1 enzyme was also investigated. As a result, theoretical Raman spectra of the drug-receptor area were obtained. The theoretical data were compared with the experimental SERS results. The characteristic bands corresponding to metabolite/ferment and antiplatelet drug vibrations were clarified. The prospects of obtaining results for pathologies based on platelet conformations during cardiovascular diseases have been demonstrated.
Transcriptomics identifies blunted immunomodulatory effects of vitamin D in people with multiple sclerosis
Authors: Yeh Wei Z. , Lea Rodney , Stankovich Jim , Sampangi Sandeep , Laverick Louise , Van der Walt Anneke , Jokubaitis Vilija , Gresle Melissa , Butzkueven Helmut
Published: January 2024

Vitamin D deficiency is a risk factor for developing multiple sclerosis (MS). However, the immune effects of vitamin D in people with MS are not well understood. We analyzed transcriptomic datasets generated by RNA sequencing of immune cell subsets (CD4+, CD8+T cells, B cells, monocytes) from 33 healthy controls and 33 untreated MS cases. We utilized a traditional bioinformatic pipeline and weighted gene co-expression network analysis (WGCNA) to determine genes and pathways correlated with endogenous vitamin D. In controls, CD4+and CD8+T cells had 1079 and 1188 genes, respectively, whose expressions were correlated with plasma 25-hydroxyvitamin D level (P < 0.05). Functional enrichment analysis identified association with TNF-alpha and MAPK signaling. In CD4+T cells of controls, vitamin D level was associated with expression levels of several genes proximal to multiple sclerosis risk loci (P = 0.01). Genes differentially associated with endogenous vitamin D by case–control status were enriched in TNF-alpha signaling via NF-κB. WGCNA suggested a blunted response to vitamin D in cases relative to controls. Collectively, our findings provide further evidence for the immune effects of vitamin D, and demonstrate a differential immune response to vitamin D in cases relative to controls, highlighting a possible mechanism contributing to MS pathophysiology.
User identification system based on 2D CQT spectrogram of EMG with adaptive frequency resolution adjustment
Authors: Kim Jae Myung , Choi Gyuho , Pan Sungbum
Published: January 2024

User identification systems based on electromyogram (EMG) signals, generated inside the body in different signal patterns and exhibiting individual characteristics based on muscle development and activity, are being actively researched. However, nonlinear and abnormal signals constrain conventional user identification using EMG signals in improving accuracy by using the 1-D feature from each time and frequency domain. Therefore, multidimensional features containing time–frequency information extracted from EMG signals have attracted much attention to improving identification accuracy. We propose a user identification system using constant Q transform (CQT) based 2D features whose time–frequency resolution is customized according to EMG signals. The proposed user identification system comprises data preprocessing, CQT-based 2D image conversion, convolutional feature extraction, and classification by convolutional neural network (CNN). The experimental results showed that the accuracy of the proposed user identification system using CQT-based 2D spectrograms was 97.5%, an improvement of 15.4% and 2.1% compared to the accuracy of 1D features and short-time Fourier transform (STFT) based user identification, respectively.