bluuebunny/crossref_metadata_2025 huggingface dataset:
Circulating and dietary advanced glycation end products and obesity in an adult population: A paradox of their detrimental effects in obesity
Authors: Turki Jalil Abduladheem , Alameri Ameer A. , Iqbal Doewes Rumi , El-Sehrawy Amr A. , Ahmad Irfan , Ramaiah Pushpamala , Kadhim Mustafa M. , Kzar Hamzah H. , Sivaraman R. , Romero-Parra Rosario Mireya , Ansari Mohammad Javed , Fakri Mustafa Yasser
Published: December 2022

Background

The detrimental role of advanced glycation end products (AGEs) against cardio-metabolic health has been revealed in several previous reports. However, the results of studies regarding the association between AGEs and obesity measurements are inconsistent. In the current meta-analysis, we aimed to quantitatively summarize the results of studies that evaluated the association between circulating and dietary AGEs with obesity measurements among the adult population.

Methods

A systematic search from PubMed, Embase, and Scopus electronic databases until 30 October 2022 retrieved a total of 21,429 observational studies. After duplicate removal, title/abstract screening, and full-text reading by two independent researchers, a final number of 18 manuscripts remained to be included in the meta-analysis.

Results

Those in the highest category of circulating AGEs had ~1.5 kg/m2reduced BMI compared with those in the lowest AGEs category [weighted mean difference (WMD): −1.485; CI: −2.459, −0.511;p= 0.003], while a nonsignificant increase in BMI was observed in the highest versus lowest category of dietary AGEs (WMD: 0.864, CI: −0.365, 2.094;p= 0.186). Also, lower amounts of circulating AGEs in individuals with obesity versus individuals without obesity were observed (WMD: −57.220, CI: −84.290, −30.149;p< 0.001). AGE type can be considered as a possible source of heterogeneity.

Conclusion

In the current meta-analysis, we observed an inverse association between circulating AGEs and body mass index among adults. Due to low study numbers, further studies are warranted to better elucidate these results.
Synchrotron-based techniques for characterizing STCH water-splitting materials
Authors: Shulda Sarah , Bell Robert T. , Strange Nicholas A. , Metzroth Lucy , Heinselman Karen N. , Sainio Sami , Roychoudhury Subhayan , Prendergast David , McDaniel Anthony H. , Ginley David S.
Published: December 2022

Understanding the role of oxygen vacancy–induced atomic and electronic structural changes to complex metal oxides during water-splitting processes is paramount to advancing the field of solar thermochemical hydrogen production (STCH). The formulation and confirmation of a mechanism for these types of chemical reactions necessitate a multifaceted experimental approach, featuring advanced structural characterization methods. Synchrotron X-ray techniques are essential to the rapidly advancing field of STCH in part due to properties such as high brilliance, high coherence, and variable energy that provide sensitivity, resolution, and rapid data acquisition times required for the characterization of complex metal oxides during water-splitting cycles. X-ray diffraction (XRD) is commonly used for determining the structures and phase purity of new materials synthesized by solid-state techniques and monitoring the structural integrity of oxides during water-splitting processes (e.g., oxygen vacancy–induced lattice expansion). X-ray absorption spectroscopy (XAS) is an element-specific technique and is sensitive to local atomic and electronic changes encountered around metal coordination centers during redox. While in operando measurements are desirable, the experimental conditions required for such measurements (high temperatures, controlled oxygen partial pressures, and H2O) practically necessitate in situ measurements that do not meet all operating conditions or ex situ measurements. Here, we highlight the application of synchrotron X-ray scattering and spectroscopic techniques using both in situ and ex situ measurements, emphasizing the advantages and limitations of each method as they relate to water-splitting processes. The best practices are discussed for preparing quenched states of reduction and performing synchrotron measurements, which focus on XRD and XAS at soft (e.g., oxygen K-edge, transition metal L-edges, and lanthanide M-edges) and hard (e.g., transition metal K-edges and lanthanide L-edges) X-ray energies. The X-ray absorption spectra of these complex oxides are a convolution of multiple contributions with accurate interpretation being contingent on computational methods. The state-of-the-art methods are discussed that enable peak positions and intensities to be related to material electronic and structural properties. Through careful experimental design, these studies can elucidate complex structure–property relationships as they pertain to nonstoichiometric water splitting. A survey of modern approaches for the evaluation of water-splitting materials at synchrotron sources under various experimental conditions is provided, and available software for data analysis is discussed.
Evaluating the performance of different thermal indices on quantifying outdoor thermal sensation in humid subtropical residential areas of China
Authors: Li Kunming , Liu Xiao , Bao Ying
Published: December 2022

Considerations of urban microclimate and thermal comfort are necessary for urban development, and a set of guidelines for a comfortable microclimate must be developed. However, to develop such guidelines, the predictive ability of thermal indices for outdoor thermal perceptions under different design decisions must be defined. The present study aimed to determine suitable indices for assessing outdoor thermal reaction in humid subtropical residential areas of China. Five criteria of coefficients of determination, Spearman’s rho, percentage of correct prediction, percentage of thermal comfort indices’ class predictions, and distribution of thermal comfort indices’ class predictions per class of thermal sensation votes (TSV) were established to assess the performance of four thermal indices commonly used in outdoor thermal comfort research of China. The empirical thermal comfort index (TSVmodel) had a better correlation with TSV, while the Universal Thermal Climate Index (UTCI) was the most successful, simulating 29.8% of TSV. The testability of Physiologically Equivalent Temperature (PET) and Standard Effective Temperature (SET*) were very low, with the correct predictive ability 16.5% and 24.4% respectively. In the selected indices, the UTCI reasonably approximated the observed data for this study and was recommended to assess the outdoor thermal comfort for evaluating the thermal comfort level under different design decisions. For all the indices, the systematic errors were generally higher than the unsystematic errors, indicating that the assessment scales do not adapt to humid subtropical residential areas of China. It is necessary to establish the thermal sensation ranges of humid subtropical areas of China.
A detailed perspective of water resource management in a dry and water scarce country: The case in Kuwait
Authors: Tariq Muhammad Atiq Ur Rehman , Alotaibi Rabeeah , Weththasinghe Kumudu Kaushalya , Rajabi Zohreh
Published: December 2022

Kuwait is an arid country with one of the world’s highest consumption rates per capita. It suffers from severe water scarcity. Annual national expenditure on direct water supply and distribution in Kuwait is substantial, which is a burden on the country’s economy. The nation’s dependency on imported food due to water scarcity is also considered a primary political and security concern. These conditions call for much more efficient use and management of water in Kuwait. This study aims to undertake an extensive analysis of the country’s water resources and review current management strategies for better planning and management. The main sources of freshwater in Kuwait are seawater desalination, brackish groundwater, and recycling wastewater. Seawater desalination is the primary source that produces 61% of freshwater for drinking, agriculture, and other water-dependent industries. Other water management measures related to rainfall drainage systems and water supply networks are also employed to better utilize scarce water. Multiple government organizations that enforce several legal frameworks oversee long-term and acute water-related issues. Regional neighbors also face similar climatic conditions to Kuwait and suffer from water scarcity and associated food shortages. Water conservation and cultivating water-efficient crops have been identified as effective measures to overcome this issue. However, due to the small size and dry arid climate in Kuwait, its future is challenging. It must invest in modern, innovative, and effective solutions to preserve the sustainability of its freshwater resources.
A snap-shot assessment of carbon emission and export in a pristine river draining permafrost peatlands (Taz River, Western Siberia)
Authors: Vorobyev Sergey N. , Pokrovsky Oleg S. , Korets Mikhail , Shirokova Liudmila S.
Published: December 2022

Mobilization of dissolved organic carbon (DOC) and CO2 from the frozen peat to surface waters in the permafrost zone of high latitude regions is expected to enhance under on-going permafrost thaw and active layer thickness deepening. Here we explored one of the most remote, pristine, unregulated and yet environmentally important rivers in western Siberia (Taz). This subarctic river drains through forested and tundra peat bogs over a gradient of permafrost and climate and likely acts as an important conduit of CO2 to the atmosphere and carbon and nutrient exporter to the Arctic Ocean. In a snapshot study during end of spring flood–beginning of summer baseflow (July 2019), we monitored daytime CO2 and CH4 concentrations and measured CO2 emissions using floating chambers in the main stem (700 km from the upper reaches to the mouth) and 16 main tributaries and we also assessed day/night variations in the emissions. We further tested the impact of land cover parameters of the watershed and tributaries. Based on regular monitoring of the terminal (gauging) station, we quantified the C export to the Arctic Ocean during the study period. We revealed sizable CO2 emissions from the main stem and tributaries (1.0 ± 0.4 and 1.8 ± 0.6 g C-CO2 m−2 d−1, respectively). The CO2 concentrations positively correlated with dissolved organic carbon (DOC), whereas the CH4 concentrations could be partially controlled by dissolved nutrients (N, P) and proportion of light coniferous forest at the watershed. The overall C emission from the water surfaces (4,845 km2) of the Taz basin (150,000 km2) during open water period (6 months, May to October) was estimated as 0.92 Tg C (>99.5% C-CO2, <0.5% C-CH4) which is twice higher than the total dissolved C (organic and inorganic) riverine export flux during the same period. Applying a “substituting space for time” approach for northern and southern parts of the river basin, we suggest that the current riverine CO2 emission may increase 2 to 3 fold in the next decades due to on-going climate warming and permafrost thaw. When integrating the obtained results into global models of C and biogeochemical cycle in the Arctic and subarctic region, the use of the Taz River as a representative example of continental planes should help to estimate the consequences of frozen peatland thaw on CO2 cycle in the Arctic and subarctic regions.
Survivors and colonizers: Contrasting biogeographic histories reconciled in the Antarctic freshwater copepod Boeckella poppei
Authors: Maturana Claudia S. , Biersma Elisabeth M. , Díaz Angie , González-Wevar Claudio , Contador Tamara , Convey Peter , Jackson Jennifer A. , Poulin Elie
Published: December 2022

Two main hypotheses have been proposed to explain the contemporary distribution of Antarctic terrestrial biota. We assess whether the current distribution of maritime Antarctic populations of the freshwater copepod Boeckella poppei is the result of (1) a post-Last Glacial Maximum (LGM) colonization, or whether (2) the species survived in regional glacial refugia throughout the LGM and earlier glaciations. Using 438 specimens from 34 different sampling sites across Southern South America, South Georgia, South Orkney Islands, South Shetland Islands, and the Antarctic Peninsula, we analyzed mitochondrial and nuclear sequences to uncover patterns of genetic diversity and population structure. We also performed median-joining haplotype network, phylogenetic reconstruction, and divergence time analyses. Finally, we evaluated past demographic changes and historical scenarios using the Approximate Bayesian Computation (ABC) method. Our data support the existence of two clades with different and contrasting biogeographic histories. The first clade has been present in maritime Antarctica since at least the mid-Pleistocene, with the South Orkney Islands the most likely refugial area. The second clade has a broader distribution including southern South America, South Georgia, South Shetland Islands, and the Antarctic Peninsula. The ABC method identified long-distance dispersal (LDD) colonization event(s) from southern South America to South Georgia and the maritime Antarctic after the LGM deglaciation, supporting more recent colonization of Antarctic locations. The current Antarctic and sub-Antarctic distribution of B. poppei is likely derived from two independent biogeographic events. The combination of both (1) post-LGM colonization from southern South America and (2) longer-term persistence in in situ regional refugia throughout glacial periods challenges current understanding of the biogeographic history of Antarctic freshwater biota. Re-colonization of ice-impacted Antarctic areas would have occurred following a LDD and Establishment model, pointing to the existence of possible post-dispersal barriers, despite widely assumed high passive dispersal capacity in freshwater invertebrates.
Two-way exchanges between animal and plant biology, with focus on evo-devo
Authors: Minelli Alessandro
Published: December 2022

By definition, biology is the science of all living beings. However, horizons restricted to either plants or animals have characterized the development of life sciences well beyond the emergence of unified perspectives applying to all forms of life, such as the cell theory or the theory of evolution. Separation between botanical and zoological traditions is not destined to go extinct easily, or shortly. Disciplinary isolation is emphasized by institutional contexts such as scientific societies and their congresses, specialist journals, disciplines recognized as teaching subjects and legitimate and fundable research fields. By shaping the personal agendas of individual scientists, this has a strong impact on the development of biology. In some fields, botanical and zoological contributions have long being effectively intertwined, but in many others plant and animal biology have failed to progress beyond a marginal dialogue. Characteristically, the so-called “general biology” and the philosophy of biology are still zoocentric (and often vertebrato- or even anthropocentric). In this article, I discuss legitimacy and fruitfulness of some old lexical and conceptual exchanges between the two traditions (cell, tissue, and embryo). Finally, moving to recent developments, I compare the contributions of plant vs. animal biology to the establishment of evolutionary developmental biology. We cannot expect that stronger integration between the different strands of life sciences will soon emerge by self-organization, but highlighting this persisting imbalance between plant and animal biology will arguably foster progress.
Mechanisms of enhancer-promoter communication and chromosomal architecture in mammals and Drosophila
Authors: Kyrchanova Olga V. , Bylino Oleg V. , Georgiev Pavel G.
Published: December 2022

The spatial organization of chromosomes is involved in regulating the majority of intranuclear processes in higher eukaryotes, including gene expression. Drosophila was used as a model to discover many transcription factors whose homologs play a key role in regulation of gene expression in mammals. According to modern views, a cohesin complex mostly determines the architecture of mammalian chromosomes by forming chromatin loops on anchors created by the CTCF DNA-binding architectural protein. The role of the cohesin complex in chromosome architecture is poorly understood in Drosophila, and CTCF is merely one of many Drosophila architectural proteins with a proven potential to organize specific long-range interactions between regulatory elements in the genome. The review compares the mechanisms responsible for long-range interactions and chromosome architecture between mammals and Drosophila.
The distinct clinical trajectory, metastatic sites, and immunobiology of microsatellite-instability-high cancers
Authors: Han Shuting , Chok Aik Yong , Peh Daniel Yang Yao , Ho Joshua Zhi-Ming , Tan Emile Kwong Wei , Koo Si-Lin , Tan Iain Bee-Huat , Ong Johnny Chin-Ann
Published: December 2022

Microsatellite-instability-high (MSI-H) cancers form a spectrum of solid organ tumors collectively known as Lynch Syndrome cancers, occurring not only in a subset of colorectal, endometrial, small bowel, gastric, pancreatic, and biliary tract cancers but also in prostate, breast, bladder, and thyroid cancers. Patients with Lynch Syndrome harbor germline mutations in mismatch repair genes, with a high degree of genomic instability, leading to somatic hypermutations and, therefore, oncogenesis and cancer progression. MSI-H cancers have unique clinicopathological characteristics compared to their microsatellite-stable (MSS) counterparts, marked by a higher neoantigen load, immune cell infiltration, and a marked clinical response to immune checkpoint blockade. Patients with known Lynch Syndrome may be detected early through surveillance, but some patients present with disseminated metastatic disease. The treatment landscape of MSI-H cancers, especially colorectal cancers, has undergone a paradigm shift and remains to be defined, with immune checkpoint blockade coming to the forefront of treatment strategies in the stage IV setting. We summarize in this review the clinical features of MSI-H cancers with a specific interest in the pattern of spread or recurrence, disease trajectory, and treatment strategies. We also summarize the tumor-immune landscape and genomic profile of MSI-H cancers and potential novel therapeutic strategies.
Synthetic lethal gene pairs: Experimental approaches and predictive models
Authors: Tang Shan , Gökbağ Birkan , Fan Kunjie , Shao Shuai , Huo Yang , Wu Xue , Cheng Lijun , Li Lang
Published: December 2022

Synthetic lethality (SL) refers to a genetic interaction in which the simultaneous perturbation of two genes leads to cell or organism death, whereas viability is maintained when only one of the pair is altered. The experimental exploration of these pairs and predictive modeling in computational biology contribute to our understanding of cancer biology and the development of cancer therapies. We extensively reviewed experimental technologies, public data sources, and predictive models in the study of synthetic lethal gene pairs and herein detail biological assumptions, experimental data, statistical models, and computational schemes of various predictive models, speculate regarding their influence on individual sample- and population-based synthetic lethal interactions, discuss the pros and cons of existing SL data and models, and highlight potential research directions in SL discovery.
Posttransplant de novo DSA and NDSA affect GvHD, OS, and DFS after haplo-HSCT in patients without pre-existing HLA antibodies of hematological malignancies
Authors: Wang Lan , Ji Kai , Chen Luyao , Li Ying , Zhu Wenjuan , Yuan Xiaoni , Bao Xiaojing , Wu Xiaojin , He Jun
Published: December 2022

To examine the production time, type, and MFI of post-transplantation de novo HLA antibodies, and their effects on haplo-HSCT outcomes, we retrospectively included 116 patients who were negative for pre-existing HLA antibodies. In total, 322 serum samples from pre-transplantation to post-transplantation were dynamically tested by Luminex and single-antigen bead reagents. Patients were divided into: HLA antibody persistently negative group (group 1), the de novo HLA antibody transiently positive group (group 2), the de novo HLA antibody non-persistently positive group (group 3), and the de novo HLA antibody persistently positive group (group 4). Group 4 included DSA+non-DSA (NDSA) (group 4a) and NDSA (group 4b) groups. The detection rate of de novo HLA antibodies was 75.9% (88/116). The median MFI for de novo HLA antibodies was 2439 (1033-20162). The incidence of II–IV aGvHD was higher in group 2 than in group 1 (52.6% vs 17.9%, P < 0.01); in group 4a than in group 1 (87.5% vs 17.9%, P < 0.001); and in group 4a than in group 4b (87.5% vs 40.0%, P = 0.001). The DFS (37.5% vs 85.7%, P < 0.01) and OS (37.5% vs 85.7%, P < 0.01) of group 4a were lower than those of group 1. The DFS (48.0% vs 85.7%, P < 0.01) and OS (56.0% vs 85.7%, P = 0.03) of group 4b were lower than those of group 1. Multivariate analysis showed that de novo HLA antibody being transiently positive (HR: 5.30; 95% CI: 1.71–16.42, P = 0.01) and persistently positive (HR: 5.67; 95% CI: 2.00–16.08, P < 0.01) were both associated with a higher incidence of II–IV aGvHD. Persistently positive de novo HLA antibodies were a risk factor for reduced DFS (HR: 6.57; 95% CI: 2.08–20.70, P < 0.01) and OS (HR: 5.51; 95% CI: 1.73–17.53, P < 0.01). DSA and NDSA can be detected since 15 days after haplo-HSCT in patients without pre-existing HLA antibodies, and affect aGvHD, DFS, and OS. Haplo-HSCT patients must be monitored for HLA antibodies changes for appropriate preventive clinical management, and we recommend that 1-month post-transplantation is the best test time point.
Identification of renal ischemia reperfusion injury subtypes and predictive strategies for delayed graft function and graft survival based on neutrophil extracellular trap-related genes
Authors: Wu Jiyue , Zhang Feilong , Zheng Xiang , Zhang Jiandong , Cao Peng , Sun Zejia , Wang Wei
Published: December 2022

Background

Ischemia reperfusion injury (IRI) is an inevitable process in renal transplantation, which is closely related to serious postoperative complications such as delayed graft function (DGF), acute rejection and graft failure. Neutrophil extracellular traps (NETs) are extracellular DNA structures decorated with various protein substances released by neutrophils under strong signal stimulation. Recently, NETs have been found to play an important role in the process of IRI. This study aimed to comprehensively analyze the expression landscape of NET-related genes (NRGs) during IRI, identify clusters with different degrees of IRI and construct robust DGF and long-term graft survival predictive strategies.

Methods

The microarray and RNA-seq datasets were obtained from the GEO database. Differentially expressed NRGs (DE-NRGs) were identified by the differential expression analysis, and the NMF algorithm was used to conduct a cluster analysis of IRI samples. Machine learning algorithms were performed to screen DGF-related hub NRGs, and DGF and long-term graft survival predictive strategies were constructed based on these hub NRGs. Finally, we verified the expression of Cxcl1 and its effect on IRI and NETs generation in the mouse IRI model.

Results

This study revealed two IRI clusters (C1 and C2 clusters) with different molecular features and clinical characteristics. Cluster C1 was characterized by active metabolism, mild inflammation and lower incidence of DGF, while Cluster C2 was inflammation activated subtype with a higher incidence of DGF. Besides, based on DGF-related hub NRGs, we successfully constructed robust DGF and long-term graft survival predictive strategies. The mouse renal IRI model verified that Cxcl1 was significantly upregulated in renal tissues after IRI, and using a CXCL8/CXCL1 inhibitor could significantly improve renal function, alleviate renal tubular necrosis, tissue inflammatory response, and NET formation.

Conclusion

This study identified two distinct IRI clusters based on DE-NRGs and constructed robust prediction methods for DGF and graft survival, which can provide references for early prevention and individualized treatment of various postoperative complications after renal transplantation.
Central nervous system tumefactive demyelinating lesions: Risk factors of relapse and follow-up observations
Authors: Li Xinnan , Miao Xiuling , Wang Yaming , Sun Junzhao , Gao Haifeng , Han Jing , Li Yuxin , Wang Qingjun , Sun Chenjing , Liu Jianguo
Published: December 2022

Objective

To track the clinical outcomes in patients who initially presented with tumefactive demyelinating lesions (TDLs), we summarized the clinical characteristics of various etiologies, and identified possible relapse risk factors for TDLs.

Methods

Between 2001 and 2021, 116 patients initially presented with TDLs in our hospital were retrospectively evaluated. Patients were followed for relapse and clinical outcomes, and grouped according to various etiologies. Demographic information, clinical data, imaging data, and laboratory results of patients were obtained and analyzed. The risk factors of relapse were analyzed by the Log-Rank test and the Cox proportional hazard model in multivariate analysis.

Result

During a median follow-up period of 72 months, 33 patients were diagnosed with multiple sclerosis (MS), 6 patients with Balo, 6 patients with neuromyelitis optica spectrum disorders (NMOSD), 10 patients with myelin oligodendrocyte glycoprotein antibody-associated demyelination (MOGAD), 1 patient with acute disseminated encephalomyelitis (ADEM), and the remaining 60 patients still have no clear etiology. These individuals with an unknown etiology were categorized independently and placed to the other etiology group. In the other etiology group, 13 patients had recurrent demyelinating phases, while 47 patients did not suffer any more clinical events. Approximately 46.6% of TDLs had relapses which were associated with multiple functional system involvement, first-phase Expanded Disability Status Scale score, lesions morphology, number of lesions, and lesions location (P<0.05). And diffuse infiltrative lesions (P=0.003, HR=6.045, 95%CI:1.860-19.652), multiple lesions (P=0.001, HR=3.262, 95%CI:1.654-6.435) and infratentorial involvement (P=0.006, HR=2.289, 95%CI:1.064-3.853) may be independent risk factors for recurrence. Relapse free survival was assessed to be 36 months.

Conclusions

In clinical practice, around 46.6% of TDLs relapsed, with the MS group showing the highest recurrence rate, and lesions location, diffuse infiltrative lesions, and multiple lesions might be independent risk factors for relapse. Nevertheless, despite extensive diagnostic work and long-term follow-up, the etiology of TDLs in some patients was still unclear. And these patients tend to have monophase course and a low rate of relapse.
The early function of cortisol in liver during Aeromonas hydrophila infection: Dynamics of the transcriptome and accessible chromatin landscapes
Authors: Jiang Hucheng , Sun Mengling , Zhao Yanhua , Liu Guoxing , Zhong Liqiang , Xue Hui , Chen Xiaohui , Zheng You , Wang Minghua
Published: December 2022

In China, channel catfish (Ictalurus punctatus) is an important aquaculture species; however, haemorrhagic disease (Aeromonas hydrophila induced disease) in these fish has caused tremendous economic loss due to high morbidity and mass mortality in the breeding industry. The role of cortisol in bacterial diseases, particularly in the acute phase, remains unclear. In this study, liver transcriptome (RNA-seq) and chromatin accessibility (ATAC-seq) analyses were employed to investigate the early functional role of cortisol in Aeromonas hydrophila-stimulated responses. Our experiments confirmed that A. hydrophila infection can initially significantly increase serum cortisol levels at 1 h after infection. At this time point, the increased serum cortisol levels can significantly regulate A. hydrophila-regulated genes by affecting both transcriptome and chromatin accessibility. Cross-analysis of RNA-seq and ATAC-seq revealed that a certain gene group (92 target_DEGs) was regulated at an early time point by cortisol. KEGG enrichment analysis revealed that the top three pathways according to target_DEGs were cancer, glutathione metabolism, and the Notch signalling pathway. The protein-protein interaction analysis of target_DEGs revealed that they may be primarily involved in cell proliferation, CD8+ T cell function, glutathione synthesis, and activation of the NF-κB signalling pathway. This suggests that after the emergence of immune stress, the early regulation of cortisol is positive against the immune response. It is possible that in this situation, the animal is attempting to avoid dangerous situations and risks and then cope with the imbalance produced by the stressor to ultimately restore homeostasis. Our results will contribute to future research on fish and provide valuable insight regarding the mechanism of immune regulation by cortisol and the study of bacterial haemorrhagic disease in channel catfish.
Mangrove restoration in Vietnamese Mekong Delta during 2015-2020: Achievements and challenges
Authors: Tinh Pham Hong , MacKenzie Richard A. , Hung Tran Dang , Vinh Truong Van , Ha Hoang Thi , Lam Mai Huong , Hanh Nguyen Thi Hong , Tung Nguyen Xuan , Hai Pham Minh , Huyen Bui Thanh
Published: December 2022

Mangrove forest in the Mekong Delta plays important roles in protecting coasts from soil erosion and strong waves, supplying seafood, and accumulating carbon. Despite these benefits, mangroves have been and continue to be severely damaged by the impacts of natural and socioeconomic activities. In recent years, large areas of mangrove forest have been restored through planting and other various management actions. In this study, we analyzed high-resolution WorldView-2 images to quantify changes in the mangrove forest in seven coastal provinces (Tien Giang, Ben Tre, Tra Vinh, Soc Trang, Bac Lieu, Ca Mau, and Kien Giang) of the Mekong Delta from 2015 to 2020. Our study is one of the first to analyze mangrove forest change at the commune scale, the smallest official administrative unit in Vietnam, to determine the area of restored mangroves. The potentials and challenges in future mangrove restoration were also assessed by analyzing satellite imagery and field survey data. In the study area, mangrove forest area increased by 11,184 ha (approximately 2,237 ha per year) from 79,593 ha in 2015 to 90,777 ha in 2020. A total area of 16,138 ha (approximately 20.3%) was lost due to mangrove conversion to other land uses, aquaculture activities and coastal erosion, etc., while 27,322 ha (approximately 34.1%) was restored or newly planted during state- and NGO-funded mangrove restoration projects and programs. These results confirmed that mangrove restoration projects and programs have played a significant role in maintaining and increasing mangrove forest cover in Mekong Delta. The results can also assist managers and decision makers in mangrove restoration evaluation, and suggest analyzing WorldView-2 images to monitor mangrove restoration over time in Vietnam.
Stable Sr isotope (88Sr/86Sr) fractionation in calcite precious corals
Authors: Yoshimura Toshihiro , Wakaki Shigeyuki , Iwasaki Nozomu , Ishikawa Tsuyoshi , Ohkouchi Naohiko
Published: December 2022

Stable isotope ratios of Sr (88Sr/86Sr) are a novel indicator for identifying terrestrial and oceanic Sr cycling and biological processes. Here we evaluate the temperature dependence of stable Sr isotope ratios (δ88Sr) in the calcite skeletons of precious corals, known as octocorals. High-precision Sr isotope measurements by double spike thermal ionization mass spectrometry were applied to different precious corals (Corallium japonicum, Pleurocorallium elatius, P. konojoi, Corallium sp., Keratoisis sp., and Coralliidae sp.) collected from water depths of 30–1500 m in the Pacific Ocean, corresponding to annual mean water temperatures of 2.5 to 19.5°C. The precious corals showed mean δ88Sr values of 0.101 ± 0.023‰. The magnitude of Sr isotope fractionation between the skeleton and ambient seawater (Δ88Sr) is −0.291 and is about −0.1‰ lower than the value predicted from the precipitation of inorganic calcite. This fractionation is not affected by changes in skeletal Sr/Ca ratio and associated biological effects on δ88Sr are negligible. δ88Sr of precious coral skeleton is an excellent recorder of ambient seawater.
Effects of habitat loss on migratory shorebird community structure at stopover sites: A case study in the Yellow River Delta, China
Authors: Duan Houlang , Yu Xiubo , Shan Kai , Zhang Chenghui , Liu Haifang
Published: December 2022

Coastal wetlands in China provide important stopover sites for migratory shorebird species. The loss of natural wetlands caused by land reclamation over the past few decades poses a major threat to shorebird populations. Although habitat loss at key stopover sites has been shown to lead to reductions in shorebird populations, the effects of habitat loss at specific stopover sites on shorebird populations remain unclear. Here, we used shorebird diversity indices and landscape metrics to elucidate the long-term (19952020) effects of habitat change on shorebird community structure in the Yellow River Delta, which is an important stopover site for shorebirds along the Yellow Sea coast. The results showed that the habitat area, largest patch index, mean patch area, and the aggregation index decreased over 25 years. By contrast, the number of patches and patch density increased over the same period. The richness, Shannon-Wiener index, Pielou index, and Simpson index of the shorebird community increased from 1995 to 2020, while abundance of shorebird declined by 90.14%. Declines in the abundance of species were more pronounced in larger-bodied ones than in smaller-bodied species (T=1.156, df=42, p=0.02). On the other hand, there were no significant differences in the decline in the abundance of threatened species and non-threatened species (T=-0.483, df=42, p=0.632) and coastal specialist species and generalist/inland specialist species (T=-1.197, df=42, p=0.239). The decrease in mean patch area significantly contributed to the reduction in abundance of shorebirds (N=6, p=0.01), and its effects were more pronounced on larger-bodied ones than on smaller-bodied species (T=-2.113, df=42, p=0.04). These results suggest that habitat loss in the Yellow River Delta has contributed to declines in shorebird populations and that larger-bodied ones are more sensitive to habitat change than smaller-bodied species. Existing wetlands are in urgent need of conservation, and further land reclamation in this region should be avoided. In addition, the development of conservation plans for coastal wetlands requires consideration of variation in the responses of different functional groups to habitat change.
Taxonomic diversity and eco-exergy changes in fishery resources associated with artificial reefs over 14 years in Daya Bay, China
Authors: Yuan Huarong , Chen Pimao , Li Xiaoguo
Published: December 2022

Marine habitat degradation resulting from human activities and environmental pollution has led to serious deterioration of marine fishery resources. To address this issue, countries worldwide are exploring sustainable fishery approaches. Installation of artificial reefs (AR) is rapidly increasing. AR have been widely constructed globally to conserve fishery resources and improve marine habitats. As an important biological group of marine fishery resources, nekton are widely evaluated to determine the effects of ecological restoration and resource conservation. In the current study, we compared the dynamic properties of taxonomic diversity and the eco-exergy of nekton community from 2 to 14 years after AR construction in Dalajia, China. The results indicated that the species number and density of nekton significantly increased after AR construction. Siganus oramin became an absolute dominant fish species in the reef area and its surroundings. The species diversity and evenness of the nekton community decreased, whereas species richness increased. The abundance, biomass, and eco-exergy of the nekton community increased over time because of the dominance of fishes. Our results highlight that AR can increase and conserve fishery resources, improve the structure of the nekton community, and increase ecosystem stability. But, at the same time, the dominance of S. oramin can interfere in the reef community. The explosive growth was quantitatively and qualitatively higher than that of other species, the diversity and evenness indices showed a decreasing trend, although the number of nekton species was significantly higher than that in the background survey and CA habitat during the same period.
Filling ecological gaps in Chilean Central Patagonia: Patterns of biodiversity and distribution of sublittoral benthic invertebrates from the Katalalixar National Reserve waters (~48°S)
Authors: Zapata-Hernández Germán , Gorny Matthias , Montiel Américo
Published: December 2022

Knowledge about the composition, diversity, and geographic distribution of marine species is important for successful conservation planning in the future. The ecological and zoogeographic patterns of benthic communities in Central Patagonia have been scarcely studied, due to the remoteness of the area combined with harsh weather conditions. During the past years, five scientific expeditions were executed in order to study the biodiversity, ecological, and biogeographical patterns of benthic invertebrates in the Katalalixar National Reserve (KNR) waters, Central Patagonia (~48°S). Our analyses comprised images from 26 video transects using a remotely operated vehicle, completed with biological sampling at four stations by means of SCUBA diving, covering a bathymetric range from 10 to 220 m depth. Stations covered the entire longitudinal range of the KNR, from inner channels to the Pacific Ocean. A total of 187 benthic invertebrate taxa were identified as OTUs (operational taxonomic units), with mollusks being the most conspicuous taxonomic group (18.7%), followed by sponges, echinoderms (16.6% each), and arthropods (14.4%). A higher OTU richness (42 to 51 OTUs) was observed in the central and western parts of the KNR waters. Analyses of the β-diversity indicated a similar level of species turnover between shallow, intermediate, and deep strata, as well as an important turnover between different locations. Dissimilitudes in the assemblage structure of invertebrates were explained mainly by changes in substrate types and longitude. Most of the species (49%) found in the KNR waters showed a wide latitudinal distribution range along the Eastern South Pacific Ocean (ESP) and the Chilean Patagonia of fjords and channels (CPFC) (~18°S and ~56°S), whereas 9.4% of the species have a wide distribution range between the CPFC and south of the Antarctic polar front (SAPF) (~42°S and ~65°S). Since only 16.7% of the species identified in the KNR are distributed exclusively in CPFC waters, it may be considered a transition area for marine invertebrates. It is distributed between northern ESP and SAPF. Knowledge of species composition and distribution patterns along spatial and environmental gradients is essential for any sustainable management, monitoring, and future conservation plans to protect the fragile and diverse marine ecosystems of Chilean Patagonia.
A low-power magnetorheological fluid clutch utilizing electropermanent magnet arrays
Authors: Bira Nicholas , Dhagat Pallavi , Davidson Joseph R.
Published: December 2022

In this work, we develop a compact, low-power and partially 3D-printed magnetorheological fluid clutch that operates by variably and reversibly altering the shear stress of the fluid through the local activation of an array of electropermanent magnets (EPMs). By toggling the magnetization of each EPM independently on the order of a few milliseconds, we allow for rapid response times and variable torque transmission without further power input. Selectively polarizing the EPMs for different lengths of time results in repeatable and variable magnetic flux, in turn enabling further control precision. We present the design, modeling, and measured performance of this clutch with various control strategies, and demonstrate its utility as a low-power alternative to more traditional clutch designs.
Analysis of the deterioration process of the dolomite with the interlayer in different directions during wetting
Authors: Dai Zhangjun , Wang Yinhui , Zhou Zhe , Li Jian , Yu Fei , Chen Shanxiong
Published: December 2022

Taking the dolomite with anhydrite interlayer at the bottom of Huangcaoshan Tunnel in Shanghai-Wuhan-Chengdu high-speed railway as the research object, the wetting deterioration and uniaxial compression tests were performed to study the influence of different interlayer orientations on the hygroscopic deterioration characteristics of rock and to analyze the process of rock deterioration. The wetting cracking and deformation characteristics of dolomite with interlayer in different directions were analyzed respectively from the time effect of rock micro-expansion and the change of ultrasonic longitudinal wave velocity, and the uniaxial compression evolution process of samples with different moisture absorption conditions and interlayer directions was analyzed respectively from the aspects of crack volume strain and energy dissipation. The results show that the direction of interlayer had a significant effect on the wetting and deterioration of the rock. The sample with vertical interlayer cracked obviously during wetting, resulting in volume expansion along the axial and radial directions of the sample; However, the sample with horizontal interlayer had almost only axial volume expansion, and the expansion rate was small. After the rock was wet and deteriorated, the propagation velocity of ultrasonic longitudinal wave in the rock decreased, and the decrease amplitude in the sample with vertical interlayer was greater than that in the sample with horizontal interlayer. After rock wetting, its uniaxial compressive strength, crack initiation level, expansion level, and the threshold value of elastic strain energy density for failure decreased, while the radial peak strain, the energy conversion rate of dissipation increased, and the plastic characteristics of the sample were enhanced, and the sample with vertical interlayer changed significantly compared with the sample with horizontal interlayer.
Correlation of low fetal fraction of cell-free DNA at the early second-trimester and pregnancy complications related to placental dysfunction in twin pregnancy
Authors: Li Jiaxin , Gu Xunke , Wei Yuan , Tao Yuan , Zhai Bingbing , Peng Chunfang , Huang Quanfei , Deng Tao , Yuan Pengbo
Published: December 2022

Introduction

This study aimed to determine the correlation between fetal fraction (FF) of cell-free DNA (cf-DNA) and pregnancy complications related to placental dysfunction in Twin Pregnancy.

Methods

This retrospective cohort study analyzed twin pregnant women who underwent non-invasive prenatal testing (NIPT) at 12+0–26+6 weeks of gestation from April 2017 to April 2021. Low fetal fraction (LFF) was defined individually as less than the 25th, 10th, 5th, and 2.5th percentile among all fetal fractions in the cohort. Primary outcomes included gestational hypertension (GH), preeclampsia (PE), gestational diabetes mellitus (GDM), and small for gestational age (SGA). Logistic regression analysis was used to assess the relationship between LFF and pregnancy complications.

Results

A total of 500 twin pregnancies (male-male twins, 245; female-female twins, 255) were included in this study. In LFF group (FF < 25th percentiles), maternal BMI was significantly higher than FF > 75th percentiles (23.6 kg/m2 vs. 21.3 kg/m2; P < 0.001). The risk of SGA increased gradually from FF < 25th percentiles [adjusted odds ratio (OR), 1.71; 95% confidence interval (CI), 1.07–2.99; P = 0.016] to FF < 2.5th percentiles (adjusted OR, 4.44; 95% CI,1.33–14.82; P < 0.015). In addition, the risks of SGA in both fetuses were higher than the risks of at least one fetus SGA in LFF group. LFF had no correlation with GH, PE, and GDM in twin pregnancy.

Conclusion

LFF has a strong association with increased risk of SGA in twin pregnancy. Moreover, FF of cf-DNA may provide a new idea for the early screening of diseases related to placental dysfunction in twin pregnancy.
Association between subclinical left ventricular ejection fraction and platelet-to-lymphocyte ratio in patients with peritoneal dialysis
Authors: Duan Yingjie , Peng Zhong , Zhong Shuzhu , Huang Hong , He Zhangxiu
Published: December 2022

Background

Reduced left ventricular ejection function (LVEF) was associated with increased mortality in patients with peritoneal dialysis (PD) in Asia and the United States of America. The neutrophil-to-lymphocyte ratio (NLR) and platelet-to-lymphocyte ratio (PLR) were correlated with LVEF in PD. However, little information is available regarding the relationship between monocyte-to-lymphocyte ratio (MLR), left ventricular ejection fraction (LVEF), and the use of NLR, PLR, and MLR in predicting left ventricular systolic dysfunction (LVSD) in patients with PD.

Methods

All 181 patients with PD were enrolled between 2014 and 2021 from the Nephrology Department of the First Affiliated Hospital of the University of South China. Demographic features, clinical characteristics, laboratory values, and echocardiographic parameters were collected.

Results

The mean age of patients with PD was 47.4 ± 12.6, and 90 (49.7%) of the patients were men. LVEF showed a negative correlation with PLR (r = −0.200, p = 0.007) and MLR (r = −0.146, p = 0.049). The levels of NLR, PLR, and MLR were elevated in patients with PD with LVSD compared with those without (all p < 0.05). PLR (OR 4.331, 95% CI: 1.223, 15.342) and albumin (OR 13.346, 95% CI: 3.928, 45.346) were significantly associated with LVSD patients with PD in the multivariate logistic analysis. For differentiating patients with PD with LVSD, optimal cutoffs of NLR, PLR, MLR, and albumin were 4.5 (sensitivity: 76.7%, specificity: 55.0%, and overall accuracy: 58%), 202.6 (sensitivity: 66.7%, specificity: 69.5%, and overall accuracy: 69%), 0.483 (sensitivity: 53.3%, specificity: 72.8%, and overall accuracy: 30%), and 34.6 (sensitivity: 72.2%), respectively.

Conclusions

Our results revealed that PLR was better than NLR, MLR, and albumin in predicting LVSD in PD.