bluuebunny/crossref_metadata_2025 huggingface dataset:
Associations between mental health disorder and management of physical chronic conditions in China: a pooled cross-sectional analysis
Authors: Zhang Zheng , Sum Grace , Qin Vicky Mengqi , Zhao Yang , Haregu Tilahun Nigatu , Oldenburg Brian , Lee John Tayu
Published: March 2021

Physical non-communicable diseases (NCDs) and mental health disorders are a rapidly increasing health burden in low-and middle-income countries. This study aims to examine the relationships between mental health disorders and cascade of care in managing four common physical NCDs (hypertension, diabetes, dyslipidemia, chronic kidney disease) in China. We utilized two waves of nationally-representative China Health and Retirement Longitudinal Study (CHARLS 2011, 2015) of older adult population aged 45 and above. A series of unadjusted and adjusted mixed-effect logistic regression was applied to evaluate the association between presence of mental health disorder and physical chronic disease awareness, treatment, and control. We found that the odds of dyslipidemia (AOR 1.81, 95% CI 1.36–2.39) and kidney disease awareness (AOR 2.88, 95% CI 2.12–3.92) were higher for individuals with mental chronic conditions, compared to those without mental chronic conditions. The odds of having hypertension treatment was higher for subjects with mental health disorder, compared to those without (AOR 1.32, 95% CI 1.02–1.70). The odds of having physical chronic conditions controlled was not significantly associated with having mental chronic conditions (P > 0.05). These results indicated that adults with mental health disorder have a greater likelihood of awareness of having dyslipidemia and kidney disease, and receiving treatment for hypertension. Strategies to address the growing burden of physical-mental NCDs in China should include efforts to improve management of patients with comorbid health condition and improve access to continual high-quality treatment after the first diagnosis.
Noninvasive prenatal testing for β-thalassemia by targeted nanopore sequencing combined with relative haplotype dosage (RHDO): a feasibility study
Authors: Jiang Fuman , Liu Weiqiang , Zhang Longmei , Guo Yulai , Chen Min , Zeng Xiaojing , Wang Yang , Li Yufan , Xian JiaJia , Du BoLe , Xie Yuhuan , Ouyang Shuming , Li Sheng , Yang Yinghong , Zhang Chunsheng , Luo Fei , Sun Xiaofang
Published: March 2021

Noninvasive prenatal testing (NIPT) for single gene disorders remains challenging. One approach that allows for accurate detection of the slight increase of the maternally inherited allele is the relative haplotype dosage (RHDO) analysis, which requires the construction of parental haplotypes. Recently, the nanopore sequencing technologies have become available and may be an ideal tool for direct construction of haplotypes. Here, we explored the feasibility of combining nanopore sequencing with the RHDO analysis in NIPT of β-thalassemia. Thirteen families at risk for β-thalassemia were recruited. Targeted region of parental genomic DNA was amplified by long-range PCR of 10 kb and 20 kb amplicons. Parental haplotypes were constructed using nanopore sequencing and next generation sequencing data. Fetal inheritance of parental haplotypes was classified by the RHDO analysis using data from maternal plasma DNA sequencing. Haplotype phasing was achieved in 12 families using data from 10 kb library. While data from the 20 kb library gave a better performance that haplotype phasing was achieved in all 13 families. Fetal status was correctly classified in 12 out of 13 families. Thus, targeted nanopore sequencing combined with the RHDO analysis is feasible to NIPT for β-thalassemia.
Acoustic voice characteristics with and without wearing a facemask
Authors: Nguyen Duy Duong , McCabe Patricia , Thomas Donna , Purcell Alison , Doble Maree , Novakovic Daniel , Chacon Antonia , Madill Catherine
Published: March 2021

Facemasks are essential for healthcare workers but characteristics of the voice whilst wearing this personal protective equipment are not well understood. In the present study, we compared acoustic voice measures in recordings of sixteen adults producing standardised vocal tasks with and without wearing either a surgical mask or a KN95 mask. Data were analysed for mean spectral levels at 0–1 kHz and 1–8 kHz regions, an energy ratio between 0–1 and 1–8 kHz (LH1000), harmonics-to-noise ratio (HNR), smoothed cepstral peak prominence (CPPS), and vocal intensity. In connected speech there was significant attenuation of mean spectral level at 1–8 kHz region and there was no significant change in this measure at 0–1 kHz. Mean spectral levels of vowel did not change significantly in mask-wearing conditions. LH1000 for connected speech significantly increased whilst wearing either a surgical mask or KN95 mask but no significant change in this measure was found for vowel. HNR was higher in the mask-wearing conditions than the no-mask condition. CPPS and vocal intensity did not change in mask-wearing conditions. These findings implied an attenuation effects of wearing these types of masks on the voice spectra with surgical mask showing less impact than the KN95.
PHIP hyperpolarized [1-13C]pyruvate and [1-13C]acetate esters via PH-INEPT polarization transfer monitored by 13C NMR and MRI
Authors: Svyatova Alexandra , Kozinenko Vitaly P. , Chukanov Nikita V. , Burueva Dudari B. , Chekmenev Eduard Y. , Chen Yu-Wen , Hwang Dennis W. , Kovtunov Kirill V. , Koptyug Igor V.
Published: March 2021

Parahydrogen-induced polarization of 13C nuclei by side-arm hydrogenation (PHIP-SAH) for [1-13C]acetate and [1-13C]pyruvate esters with application of PH-INEPT-type pulse sequences for 1H to 13C polarization transfer is reported, and its efficiency is compared with that of polarization transfer based on magnetic field cycling (MFC). The pulse-sequence transfer approach may have its merits in some applications because the entire hyperpolarization procedure is implemented directly in an NMR or MRI instrument, whereas MFC requires a controlled field variation at low magnetic fields. Optimization of the PH-INEPT-type transfer sequences resulted in 13C polarization values of 0.66 ± 0.04% and 0.19 ± 0.02% for allyl [1-13C]pyruvate and ethyl [1-13C]acetate, respectively, which is lower than the corresponding polarization levels obtained with MFC for 1H to 13C polarization transfer (3.95 ± 0.05% and 0.65 ± 0.05% for allyl [1-13C]pyruvate and ethyl [1-13C]acetate, respectively). Nevertheless, a significant 13C NMR signal enhancement with respect to thermal polarization allowed us to perform 13C MR imaging of both biologically relevant hyperpolarized molecules which can be used to produce useful contrast agents for the in vivo imaging applications.
The effects of a music intervention during port catheter placement on anxiety and stress
Authors: Schaal Nora K. , Brückner Johanna , Wolf Oliver T. , Ruckhäberle Eugen , Fehm Tanja , Hepp Philip
Published: March 2021

Studies have shown that perioperative music interventions can reduce patients’ anxiety levels. However, in small operations like port catheter surgery evidence is sparse. The present single-blinded, randomised controlled two-armed study included 84 female patients undergoing port catheter placement who were randomly assigned to either listening to music during surgery vs. no music intervention. The medical staff was blind to group allocation. On the day of the surgery anxiety and stress levels were evaluated using subjective (STAI questionnaire, visual analogue scales) and objective (vital parameters, salivary cortisol) parameters at different time points (before the surgery, at the end of the surgery and 1 h post-surgery). The music group showed significant reductions of systolic blood pressure (from 136.5 mmHg ± 26.1 to 123.3 mmHg ± 22.0, p = .002) and heart rate (from 75.6 bpm ± 12.3 to 73.1 bpm ± 12.2, p = .035) from beginning of the surgery to skin suture, whereas the control group did not. No significant effects of the music intervention on subjective anxiety measures or salivary cortisol were revealed. In sum, the study demonstrates that a music intervention during port catheter placement positively influences physiological anxiety levels, whereas no effects were revealed for subjective anxiety and salivary cortisol. Thus, music can be considered as a low cost addition in clinical routine in order to reduce patients’ heart rate and blood pressure. Future studies are encouraged to further explore the differential effects of intraoperative music interventions on physiological, endocrinological and subjective anxiety levels.
Heterogeneous irradiated-pristine polyethylene nanofiber junction as a high-performance solid-state thermal diode
Authors: Luo Xiao , Luan Yuxuan , Cai Yutian , Shen Sheng
Published: March 2021

In this work, we demonstrate two types of heterogeneous irradiated-pristine polyethylene nanofiber junctions, ‘heavily-irradiated-pristine’ (HI-P) and ‘lightly-irradiated-pristine’ (LI-P) junctions, as high-performance solid-state thermal diodes. The HI-P junction rectifies heat flux in a single direction, while the LI-P junction shows dual-directional rectification under different working temperatures. We accurately model the phase transition of polyethylene nanofibers with a finite temperature range rather than a step function. The finite-temperature-range model suggests that the rectification factor increases with temperature bias and there is a minimum threshold of temperature bias for notable rectification. Besides, the finite-temperature-range model shows better prediction for the heat flow data from experiments, while the step function model tends to overestimate the rectification performance around the optimal length fraction of irradiation. Although both the models show that an optimal rectification occurs when the interface temperatures in the forward and the reverse biases are equal, the optimized rectification factor is determined by the temperature bias and the temperature range of phase transition. This work elucidates the influence of both the temperature bias and the temperature range of phase transition on thermal rectification performance, which could incredibly benefit the evaluation and design of thermal diodes.
Magnesium level correlation with clinical status and quality of life in women with hormone related conditions and pregnancy based on real world data
Authors: Orlova Svetlana , Dikke Galina , Pickering Gisele , Djobava Eliso , Konchits Sofya , Starostin Kirill
Published: March 2021

This study was aimed to assess the effectiveness of magnesium (Mg)-vitamin B 6 replenishment and its correlation with clinical status in pregnant women (PW), and quality of life in women with hormone-related conditions (HRCW) and hypomagnesemia (HME). Data collected in four observational studies were pooled and analysed. All women received Mg supplementation for 4 weeks. The proportion of women with normalized Mg level, and the correlation between serum Mg dynamics and number of symptoms/complaints (PW) or changes in World Health Organization quality of life questionnaire scores (WHOQOL; HRCW) were evaluated. 869 PW and 957 HRCW were included in the study. Normalization of serum Mg level to ≥ 0.66 mmol/L occurred in 92.1% of PW and 78.4% of HRCW, and to ≥ 0.8 mmol/L in 73.8% and 58.9%, respectively. Mg normalization was accompanied by a median decrease of 1 symptom and 1 complaint in PW. Serum Mg level increase by 0.1 mmol/L was associated to significant changes in the WHOQOL scores in HRCW. Treatment of HME with the Mg for approximately 4 weeks provided a high response rate of Mg serum level, was associated with an improvement in symptom severity and complaints in PW, and WHOQOL score in HRCW. A 0.8 mmol/L cut-off appeared to be more relevant in terms of patient-reported outcomes.
Emotional valence sensing using a wearable facial EMG device
Authors: Sato Wataru , Murata Koichi , Uraoka Yasuyuki , Shibata Kazuaki , Yoshikawa Sakiko , Furuta Masafumi
Published: March 2021

Emotion sensing using physiological signals in real-life situations can be practically valuable. Previous studies have developed wearable devices that record autonomic nervous system activity, which reflects emotional arousal. However, no study determined whether emotional valence can be assessed using wearable devices. To this end, we developed a wearable device to record facial electromyography (EMG) from the corrugator supercilii (CS) and zygomatic major (ZM) muscles. To validate the device, in Experiment 1, we used a traditional wired device and our wearable device, to record participants’ facial EMG while they were viewing emotional films. Participants viewed the films again and continuously rated their recalled subjective valence during the first viewing. The facial EMG signals recorded using both wired and wearable devices showed that CS and ZM activities were, respectively, negatively and positively correlated with continuous valence ratings. In Experiment 2, we used the wearable device to record participants’ facial EMG while they were playing Wii Bowling games and assessed their cued-recall continuous valence ratings. CS and ZM activities were correlated negatively and positively, respectively, with continuous valence ratings. These data suggest the possibility that facial EMG signals recorded by a wearable device can be used to assess subjective emotional valence in future naturalistic studies.
Prediction of tau accumulation in prodromal Alzheimer’s disease using an ensemble machine learning approach
Authors: Kim Jaeho , Park Yuhyun , Park Seongbeom , Jang Hyemin , Kim Hee Jin , Na Duk L. , Lee Hyejoo , Seo Sang Won
Published: March 2021

We developed machine learning (ML) algorithms to predict abnormal tau accumulation among patients with prodromal AD. We recruited 64 patients with prodromal AD using the Alzheimer’s Disease Neuroimaging Initiative (ADNI) dataset. Supervised ML approaches based on the random forest (RF) and a gradient boosting machine (GBM) were used. The GBM resulted in an AUC of 0.61 (95% confidence interval [CI] 0.579–0.647) with clinical data (age, sex, years of education) and a higher AUC of 0.817 (95% CI 0.804–0.830) with clinical and neuropsychological data. The highest AUC was 0.86 (95% CI 0.839–0.885) achieved with additional information such as cortical thickness in clinical data and neuropsychological results. Through the analysis of the impact order of the variables in each ML classifier, cortical thickness of the parietal lobe and occipital lobe and neuropsychological tests of memory domain were found to be more important features for each classifier. Our ML algorithms predicting tau burden may provide important information for the recruitment of participants in potential clinical trials of tau targeting therapies.
Key soil parameters affecting the survival of Panax notoginseng under continuous cropping
Authors: Xu Wumei , Wu Fengyun , Wang Haoji , Zhao Linyan , Liu Xue , Xiang Ping , Guan Huilin , Ma Lena Q.
Published: March 2021

Negative plant-soil feedbacks lead to the poor growth of Panax notoginseng (Sanqi), a well-known herb in Asia and has been used worldwide, under continuous cropping. However, the key soil parameters causing the replant problem are still unclear. Here we conducted a field experiment after 5-year continuous cropping. Sanqi seedlings were cultivated in 7 plots (1.5 m × 2 m), which were randomly assigned along a survival gradient. In total, 13 important soil parameters were measured to understand their relationship with Sanqi’s survival. Pearson correlation analysis showed that 6 soil parameters, including phosphatase, urease, cellulase, bacteria/fungi ratio, available N, and pH, were all correlated with Sanqi’s survival rate (P < 0.05). Principal component analysis (PCA) indicated that they explained 61% of the variances based on the first component, with soil pH being closely correlated with other parameters affecting Sanqi’s survival. The optimum pH for Sanqi growth is about 6.5, but the mean soil pH in the study area is 5.27 (4.86–5.68), therefore it is possible to ameliorate the poor growth of Sanqi by increasing soil pH. This study may also help to reduce the replant problem of other crops under continuous cropping since it is widespread in agricultural production.
Characterization of the role of autophagy in retinal ganglion cell survival over time using a rat model of chronic ocular hypertension
Authors: Lee Si Hyung , Shim Kyung Sun , Kim Chan Yun , Park Tae Kwann
Published: March 2021

Autophagy is an essential cellular process for the degradation and recycling of cellular components, and its dysregulation has been linked to neuronal cell death and neurodegeneration. In glaucoma, the role of autophagy in retinal ganglion cell (RGC) survival remains contradictory. Moreover, the effects of autophagy modulation at different time-points on RGC survival in a glaucoma model have not been investigated. In this study, we assessed the time-dependent role of autophagy in RGC survival in a circumlimbal suture-induced ocular hypertensive (OHT) rat model. Intraocular pressure (IOP) elevation led to a gradual autophagy induction, which reached a maximum between 1 and 4 weeks after OHT induction. On the other hand, early autophagy was impaired between 1 and 3 days after circumlimbal suturing, indicated by increased p62 levels due to reduced autophagosomal turnover. The intravitreal administration of rapamycin at different time-points after the application of the circumlimbal suture indicated that autophagy induction early during OHT development had potent survival-promoting effects in RGCs. In conclusion, our findings suggest that the role of autophagy in RGCs during OHT development might differ in a time-dependent manner. Modulating autophagy at the appropriate time might serve as a potential therapeutic approach to enhance RGC survival in OHT.
Nitrogen and boron doped carbon layer coated multiwall carbon nanotubes as high performance anode materials for lithium ion batteries
Authors: Liu Bo , Sun Xiaolei , Liao Zhongquan , Lu Xueyi , Zhang Lin , Hao Guang-Ping
Published: March 2021

Lithium ion batteries (LIBs) are at present widely used as energy storage and conversion device in our daily life. However, due to the limited power density, the application of LIBs is still restricted in some areas such as commercial vehicles or heavy-duty trucks. An effective strategy to solve this problem is to increase energy density through the development of battery materials. At the same time, a stable long cycling battery is a great demand of environmental protection and industry. Herein we present our new materials, nitrogen and boron doped carbon layer coated multiwall carbon nanotubes (NBC@MWCNTs), which can be used as anodes for LIBs. The electrochemical results demonstrate that the designed NBC@MWCNTs electrode possesses high stable capacity over an ultra-long cycling lifespan (5000 cycles) and superior rate capability even at very high current density (67.5 A g−1). Such impressive lithium storage properties could be ascribed to the synergistic coupling effect of the distinctive structural features, the reduced diffusion length of lithium ions, more active sites generated by doped atoms for lithium storage, as well as the enhancement of the electrode structural integrity. Taken together, these results indicate that the N, B-doped carbon@MWCNTs materials may have great potential for applications in next-generation high performance rechargeable batteries.
Reciprocal change of occipitocervical parameters after anterior cervical discectomy and fusion
Authors: Park Eugene J. , Chung Seungho , Min Woo-Kie
Published: March 2021

To evaluate the reciprocal changes in occipitocervical parameters according to the recovery of cervical lordosis (CL) after anterior cervical discectomy and fusion (ACDF) in patients with sagittal imbalance. Sixty-five cases that underwent ACDF were followed. They were divided according to the recovery of the CL: Group 1 (ΔCL > 5°, 30 cases) and Group 2 (ΔCL < 5°, 35 cases). The following parameters were measured: occiput-cervical inclination (OCI), CL, occiput-C2 angle (OC2A), distance between external occipital protuberance and spinous process of C2 (OC2D), distance between spinous processes of C2 and C7 (C27D), and shortest distance between the plumb line of C2 body and posterosuperior corner of C7 (C27SVA). Overall, all parameters changed significantly after ACDF. Preoperative CL and preoperative C27D showed a correlation with ΔCL. ΔCL was negatively correlated with ΔC27D and ΔC27SVA. In Group 1, CL increased from − 2.60 ± 1.88° to 11.57 ± 1.83°, OC2A decreased from 23.96 ± 2.05° to 19.87 ± 1.36°, OC2D increased from 82.96 ± 1.48 mm to 86.50 ± 1.81 mm, C27D decreased from 95.61 ± 2.66 mm to 87.01 ± 2.50 mm, and C27SVA decreased from 24.14 ± 2.20 mm to 17.06 ± 2.14 mm. In Group 2, only OCI decreased significantly after ACDF. ACDF can increase CL postoperatively in patients with cervical sagittal imbalance. Patients with significant CL recovery after ACDF showed a reciprocal change in occipitocervical parameters. (OC2A, OC2D).
Mass spectrometry-based metabolomics for the discovery of candidate markers of flavonoid and polyphenolic intake in adults
Authors: Charles David , Gethings Lee A. , Potts James F. , Burney Peter G. J. , Garcia-Larsen Vanessa
Published: March 2021

Robust biological markers of dietary exposure are essential in improving the understanding of the link between diet and health outcomes. Polyphenolic compounds, including flavonoids, have been proposed to mitigate the risk of chronic diseases where oxidative stress and inflammation play a central role. Biomarkers can provide objective measurement of the levels of polyphenolic compounds. In this study, we provide methodology to identify potential candidate markers of polyphenol intake in human serum. Seventeen participants from the UK arm of the Global Allergy and Asthma Network of Excellence (GA2LEN) had their dietary intake estimated using a validated food frequency questionnaire, and serum samples were assessed using mass spectrometry to identify potential candidate markers. 144 features were assigned identities, of these we identified four biologically relevant compounds (rhamnazin 3-rutinoside, 2-galloyl-1,4-galactarolactone methyl ester, 2″,32″-di-O-p-coumaroylafzelin and cyclocommunin), which were significantly increased in the serum of participants with high predicted level of fruit and vegetable intake. 2-galloyl-1,4-galactarolactone methyl ester was strongly correlated with total flavonoids (r = 0.62; P = 0.005), flavan-3-ols (r = 0.67; P = 0.002) as well as with other four subclasses. Rhamnazin 3-rutinoside showed strong correlation with pro-anthocyanidins (r = 0.68; P = 0.001), flavones (r = 0.62; P = 0.005). Our results suggest that serum profiling for these compounds might be an effective way of establishing the relative intake of flavonoids and could contribute to improve the accuracy of epidemiological methods to ascertain flavonoid intake.
Microsatellite analysis reveals low genetic diversity in managed populations of the critically endangered gharial (Gavialis gangeticus) in India
Authors: Sharma Surya Prasad , Ghazi Mirza Ghazanfarullah , Katdare Suyash , Dasgupta Niladri , Mondol Samrat , Gupta Sandeep Kumar , Hussain Syed Ainul
Published: March 2021

The gharial (Gavialis gangeticus) is a critically endangered crocodylian, endemic to the Indian subcontinent. The species has experienced severe population decline during the twentieth century owing to habitat loss, poaching, and mortalities in passive fishing. Its extant populations have largely recovered through translocation programmes initiated in 1975. Understanding the genetic status of these populations is crucial for evaluating the effectiveness of the ongoing conservation efforts. This study assessed the genetic diversity, population structure, and evidence of genetic bottlenecks of the two managed populations inhabiting the Chambal and Girwa Rivers, which hold nearly 80% of the global gharial populations. We used seven polymorphic nuclear microsatellite loci and a 520 bp partial fragment of the mitochondrial control region (CR). The overall mean allelic richness (Ar) was 2.80 ± 0.40, and the observed (Ho) and expected (He) heterozygosities were 0.40 ± 0.05 and 0.39 ± 0.05, respectively. We observed low levels of genetic differentiation between populations (FST = 0.039,P < 0.05;G’ST = 0.058,P < 0.05 Jost’sD = 0.016,P < 0.05). The bottleneck analysis using theMratio (Chambal = 0.31 ± 0.06; Girwa = 0.41 ± 0.12) suggested the presence of a genetic bottleneck in both populations. The mitochondrial CR also showed a low level of variation, with two haplotypes observed in the Girwa population. This study highlights the low level of genetic diversity in the two largest managed gharial populations in the wild. Hence, it is recommended to assess the genetic status of extant wild and captive gharial populations for planning future translocation programmes to ensure long-term survival in the wild.
Exploring a sustainable building’s impact on occupant mental health and cognitive function in a virtual environment
Authors: Hu Ming , Simon Madlen , Fix Spencer , Vivino Anthony A. , Bernat Edward
Published: March 2021

Even though people spend the majority of their time indoors, the role of buildings in shaping human experience is still not well understood. The objective of this experimental project is to develop, test, and validate a data-driven neuroscience approach to understand the built environment’s impact on occupant cognitive function and mental health. The present study utilized virtual environments and electroencephalogram (EEG) and event-related potential (ERP) approaches, to provide objective neurophysiological information about how sustainable buildings (SBs) impact people’s affective and cognitive functioning differently compared to conventional building (CBs). The long-term goal is to assess the validity of sustainable building design protocols in promoting and increasing mental health and well-being and the mechanism used to accomplish these increases. The findings showed test subjects demonstrated increased visual system engagement and modulated attentional focus and control processing in the SB compared to the CB environments. The findings can be explained by the cognitive load theory, which is consistent with the interpretation of greater focus on the present environment and reduced internal mental processing (cf. mindfulness), based on the observed increased theta/delta activities and greater engagement of visual systems and corresponding decreases in frontal activity in the SB environment. In addition, the combination of virtual environment (VE) and EEG/ERP has the potential to advance design methods by soliciting occupants’ responses prior to completion of the projects. Building design is more than aesthetics; expanding the horizon for neuroscience would eventually result in a new knowledge base for building design, particularly sustainable building design, since the sustainability of the building often needs to be quantified.
Pseudomonas fluorescens F113 type VI secretion systems mediate bacterial killing and adaption to the rhizosphere microbiome
Authors: Durán David , Bernal Patricia , Vazquez-Arias David , Blanco-Romero Esther , Garrido-Sanz Daniel , Redondo-Nieto Miguel , Rivilla Rafael , Martín Marta
Published: March 2021

The genome of Pseudomonas fluorescens F113, a model rhizobacterium and a plant growth-promoting agent, encodes three putative type VI secretion systems (T6SSs); F1-, F2- and F3-T6SS. Bioinformatic analysis of the F113 T6SSs has revealed that they belong to group 3, group 1.1, and group 4a, respectively, similar to those previously described in Pseudomonas aeruginosa. In addition, in silico analyses allowed us to identify genes encoding a total of five orphan VgrG proteins and eight putative effectors (Tfe), some with their cognate immunity protein (Tfi) pairs. Genes encoding Tfe and Tfi are found in the proximity of P. fluorescens F113 vgrG, hcp, eagR and tap genes. RNA-Seq analyses in liquid culture and rhizosphere have revealed that F1- and F3-T6SS are expressed under all conditions, indicating that they are active systems, while F2-T6SS did not show any relevant expression under the tested conditions. The analysis of structural mutants in the three T6SSs has shown that the active F1- and F3-T6SSs are involved in interbacterial killing while F2 is not active in these conditions and its role is still unknown.. A rhizosphere colonization analysis of the double mutant affected in the F1- and F3-T6SS clusters showed that the double mutant was severely impaired in persistence in the rhizosphere microbiome, revealing the importance of these two systems for rhizosphere adaption.
Identification of positive and negative regulators in the stepwise developmental progression towards infectivity in Trypanosoma brucei
Authors: Toh Justin Y. , Nkouawa Agathe , Sánchez Saúl Rojas , Shi Huafang , Kolev Nikolay G. , Tschudi Christian
Published: March 2021

Trypanosoma brucei is a protozoan parasite that causes important human and livestock diseases in sub-Saharan Africa. By overexpressing a single RNA-binding protein, RBP6, in non-infectious procyclics trypanosomes, we previously recapitulated in vitro the events occurring in the tsetse fly vector, namely the development of epimastigotes and infectious, quiescent metacyclic parasites. To identify genes involved in this developmental progression, we individually targeted 86 transcripts by RNAi in the RBP6 overexpression cell line and assessed the loss-of-function phenotypes on repositioning the kinetoplast, an organelle that contains the mitochondrial genome, the expression of BARP or brucei alanine rich protein, a marker for epimastigotes, and metacyclic variant surface glycoprotein. This screen identified 22 genes that positively or negatively regulate the stepwise progression towards infectivity at different stages. Two previously uncharacterized putative nucleic acid binding proteins emerged as potent regulators, namely the cold shock domain-containing proteins CSD1 and CSD2. RNA-Seq data from a selected group of cell lines further revealed that the components of gene expression regulatory networks identified in this study affected the abundance of a subset of transcripts in very similar fashion. Finally, our data suggest a considerable overlap between the genes that regulate the formation of stumpy bloodstream form trypanosomes and the genes that govern the development of metacyclic form parasites.
Symmetry perception with spiking neural networks
Authors: George Jonathan K. , Soci Cesare , Miscuglio Mario , Sorger Volker J.
Published: March 2021

Mirror symmetry is an abundant feature in both nature and technology. Its successful detection is critical for perception procedures based on visual stimuli and requires organizational processes. Neuromorphic computing, utilizing brain-mimicked networks, could be a technology-solution providing such perceptual organization functionality, and furthermore has made tremendous advances in computing efficiency by applying a spiking model of information. Spiking models inherently maximize efficiency in noisy environments by placing the energy of the signal in a minimal time. However, many neuromorphic computing models ignore time delay between nodes, choosing instead to approximate connections between neurons as instantaneous weighting. With this assumption, many complex time interactions of spiking neurons are lost. Here, we show that the coincidence detection property of a spiking-based feed-forward neural network enables mirror symmetry. Testing this algorithm exemplary on geospatial satellite image data sets reveals how symmetry density enables automated recognition of man-made structures over vegetation. We further demonstrate that the addition of noise improves feature detectability of an image through coincidence point generation. The ability to obtain mirror symmetry from spiking neural networks can be a powerful tool for applications in image-based rendering, computer graphics, robotics, photo interpretation, image retrieval, video analysis and annotation, multi-media and may help accelerating the brain-machine interconnection. More importantly it enables a technology pathway in bridging the gap between the low-level incoming sensor stimuli and high-level interpretation of these inputs as recognized objects and scenes in the world.
Burrow emergence rhythms of Nephrops norvegicus by UWTV and surveying biases
Authors: Aguzzi Jacopo , Bahamon Nixon , Doyle Jennifer , Lordan Colm , Tuck Ian D. , Chiarini Matteo , Martinelli Michela , Company Joan B.
Published: March 2021

Underwater Television (UWTV) surveys provide fishery-independent stock size estimations of the Norway lobster (Nephrops norvegicus), based directly on burrow counting using the survey assumption of “one animal = one burrow”. However, stock size may be uncertain depending on true rates of burrow occupation. For the first time, 3055 video transects carried out in several Functional Units (FUs) around Ireland were used to investigate this uncertainty. This paper deals with the discrimination of burrow emergence and door-keeping diel behaviour inNephrops norvegicus,which is one of the most commercially important fisheries in Europe. Comparisons of burrow densities with densities of visible animals engaged in door-keeping (i.e. animals waiting at the tunnel entrance) behaviour and animals in full emergence, were analysed at time windows of expected maximum population emergence. Timing of maximum emergence was determined using wave-form analysis and GAM modelling. The results showed an average level of 1 visibleNephropsindividual per 10 burrow systems, depending on sampling time and depth. This calls into question the current burrow occupancy assumption which may not hold true in all FUs. This is discussed in relation to limitations of sampling methodologies and new autonomous robotic technological solutions for monitoring.
Genesis, controls and risk prediction of H2S in coal mine gas
Authors: Xie Weidong , Wang Hua , Wang Meng , He Ye
Published: March 2021

Abnormal H2S concentration in coal mine gas is a serious threat to normal mining activities, which has caused serious loss of life and property in many coal mines. This study explores the genesis and influencing factors of abnormal H2S concentration in coal mine gas, taking the Xishan coal mine in the Fukang mining area as a case study. The H2S formation by bacterial sulfate reduction (BSR) is simulated with a bacterial culture experiment and that by thermochemical sulfate reduction (TSR) is simulated with a thermal reduction experiment. The potential for a magmatic genesis is assessed using data regarding the tectonic evolution and history of magma intrusion in the study area. The factors influencing H2S formation and enrichment are then analyzed by a comprehensive consideration of the characteristics of coal, the gas composition, the coal seam groundwater geochemistry and other geological factors in the study area. The results show that the study area meets the necessary conditions for the BSR process to operate and that there is widespread BSR derived H2S. TSR genesis H2S mainly forms in coal fire areas and their vicinity, while there is little contribution from magmatically formed H2S. The concentration of H2S is negatively correlated with the buried depth of the coal seam, the concentrations of CH4, N2 and CO2, and the ash yield; and it is positively correlated with the volatiles yield and total sulfur content. In addition, in areas with abnormally high H2S concentration, the concentration of SO42− is obviously lower, HCO3− + CO32− concentration is higher, and the HCO3−/SO42− value is larger than that in non-anomalous areas. Geologically, H2S enrichment is found to be controlled by lithology, tectonism, and hydrogeological conditions. Moreover, the results of predictive modeling show that areas prone to abnormal H2S concentration are generally spatially correlated with coal fire areas. In this study, the genetic types of H2S and the factors controlling their formation and retention are discussed, producing research results that have guiding significance for the prediction and prevention of the coal mine disasters that arises from abnormal H2S concentration.
Atrial high‑rate episodes and risk of major adverse cardiovascular events in patients with dual chamber permanent pacemakers: a retrospective study
Authors: Lu Wei-Da , Chen Ju-Yi
Published: March 2021

Patients with atrial high-rate episodes (AHRE) are at higher risk of major adverse cardiovascular events (MACE). The cutoff threshold for AHRE duration for MACE, with/without history of atrial fibrillation (AF) or myocardial infarction (MI), is unknown. A total of 481 consecutive patients with/without history of AF or MI receiving dual-chamber pacemaker implantation were included. The primary outcome was a composite endpoint of MACE after AHRE ≥ 5 min, ≥ 6 h, and ≥ 24 h. AHRE was defined as > 175 bpm (MEDTRONIC) or > 200 bpm (BIOTRONIK) lasting ≥ 5 min. Cox regression analysis with time-dependent covariates was conducted. Patients’ mean age was 75.3 ± 10.7 years and 188 (39.1%) developed AHRE ≥ 5 min, 115 (23.9%) ≥ 6 h, and 83 (17.3%) ≥ 24 h. During follow-up (median 39.9 ± 29.8 months), 92 MACE occurred (IR 5.749%/year, 95% CI 3.88–5.85). AHRE ≥ 5 min (HR 5.252, 95% CI 2.575–10.715, P < 0.001) and ≥ 6 h (HR 2.548, 95% CI 1.284–5.058, P = 0.007) was independently associated with MACE, but not AHRE ≥ 24 h. Patients with history of MI (IR 17.80%/year) had higher MACE incidence than those without (IR 3.77%/year, p = 0.001). Significant differences were found between MACE patients with/without history of AF in AHRE ≥ 5 min but not AHRE ≥ 6 h or ≥ 24 h. Patients with dual-chamber pacemakers who develop AHRE have increased risk of MACE, particularly after history of AF or MI.
Crystal structures and mechanical properties of osmium diboride at high pressure
Authors: Wang Yi X. , Liu Ying Y. , Yan Zheng X. , Liu Wei , Zhou Gao L. , Xiong Ke Z.
Published: March 2021

We have investigated the crystal structures and mechanical properties of osmium diboride (OsB2) based on the density functional theory. The structures of OsB2 from 0 to 400 GPa were predicted using the particle swarm optimization algorithm structure prediction technique. The orthorhombic Pmmn structure of OsB2 (oP6-OsB2) was found to be the most stable phase under zero pressure and it will transfer to the hexagonal P63/mmc structure (hP6-OsB2) around 12.4 GPa. Meanwhile, we have discovered a new stable orthorhombic Immm structure (oI12-OsB2) above 379.6 GPa. After that, a thorough and comprehensive investigation on mechanical properties of different OsB2 phases is performed in this work. Further studies showed that the hardness of oP6-OsB2 and hP6-OsB2 at zero pressure is 15.6 and 20.1 GPa, while that for oI12-OsB2 under 400 GPa is 15.4 GPa, indicating that these three phases should be potentially hard materials rather than superhard materials. Finally, the pressure–temperature phase diagram of OsB2 is constructed for the first time by using the quasi-harmonic approximation method. Our results showed that the transition pressures of oP6-OsB2 → hP6-OsB2 and hP6-OsB2 → oI12-OsB2 all decreases appreciably with the increase of temperature.
Comparison of clinical severity and epidemiological spectrum between coronavirus disease 2019 and influenza in children
Authors: Pokorska-Śpiewak Maria , Talarek Ewa , Popielska Jolanta , Nowicka Karolina , Ołdakowska Agnieszka , Zawadka Konrad , Kowalik-Mikołajewska Barbara , Tomasik Anna , Dobrzeniecka Anna , Lipińska Marta , Krynicka-Czech Beata , Coupland Urszula , Stańska-Perka Aleksandra , Ludek Małgorzata , Marczyńska Magdalena
Published: March 2021

Data on the novel coronavirus disease 2019 (COVID-19) in children are limited, and studies from Europe are scarce. We analyzed the clinical severity and epidemiologic aspects of COVID-19 in consecutive children aged 0–18 years, referred with a suspicion of COVID-19 between February 1, and April 15, 2020. RT-PCR on a nasopharyngeal swab was used to confirm COVID-19. 319 children met the criteria of a suspected case. COVID-19 was diagnosed in 15/319 (4.7%) patients (8 male; mean age 10.5 years). All of them had household contact with an infected relative. Five (33.3%) patients were asymptomatic. In 9/15 (60.0%) children, the course of the disease was mild, and in 1/15 (6.7%), it was moderate, with the following symptoms: fever (46.7%), cough (40%), diarrhea (20%), vomiting (13.3%), rhinitis (6.7%), and shortness of breath (6.7%). In the COVID-19-negative patients, other infections were confirmed, including influenza in 32/319 (10%). The clinical course of COVID-19 and influenza differed significantly based on the clinical presentation. In conclusion, the clinical course of COVID-19 in children is usually mild or asymptomatic. In children suspected of having COVID-19, other infections should not be overlooked. The main risk factor for COVID-19 in children is household contact with an infected relative.
Development of a photochemical thrombosis investigation system to obtain a rabbit ischemic stroke model
Authors: Kim Yoonhee , Lee Yoon Bum , Bae Seung Kuk , Oh Sung Suk , Choi Jong-ryul
Published: March 2021

Photochemical thrombosis is a method for the induction of ischemic stroke in the cerebral cortex. It can generate localized ischemic infarcts in the desired region; therefore, it has been actively employed in establishing an ischemic stroke animal model and in vivo assays of diagnostic and therapeutic techniques for stroke. To establish a rabbit ischemic stroke model and overcome the shortcoming of previous studies that were difficult to build a standardized photothrombotic rabbit model, we developed a photochemical thrombosis induction system that can produce consistent brain damage on a specific area. To verify the generation of photothrombotic brain damage using the system, longitudinal magnetic resonance imaging, 2,3,5-triphenyltetrazolium chloride staining, and histological staining were applied. These analytical methods have a high correlation for ischemic infarction and are appropriate for analyzing photothrombotic brain damage in the rabbit brain. The results indicated that the photothrombosis induction system has a main advantage of being accurately controlled a targeted region of photothrombosis and can produce cerebral hemisphere lesions on the target region of the rabbit brain. In conjugation with brain atlas, it can induce photochemical ischemic stroke locally in the part of the brain that is responsible for a particular brain function and the system can be used to develop animal models with degraded specific functions. Also, the photochemical thrombosis induction system and a standardized rabbit ischemic stroke model that uses this system have the potential to be used for verifications of biomedical techniques for ischemic stroke at a preclinical stage in parallel with further performance improvements.
Ultrathin dual-mode vortex beam generator based on anisotropic coding metasurface
Authors: Zhang Liang , Guo Jie , Ding Tongyu
Published: March 2021

In this paper, an anisotropic coding metasurface is proposed to achieve dual-mode vortex beam generator by independently manipulating the orthogonally linearly polarized waves. The metasurface is composed of ultrathin single-layer ground-backed Jerusalem cross structure, which can provide complete and independent control of the orthogonally linearly polarized incident waves with greatly simplified design process. As proof of concept, a metasurface is designed to generate vortex beams with different topological charges under orthogonal polarizations operating at 15 GHz. Experimental measurements performed on fabricated prototype reveal high quality, and show good agreements with theoretical designs and simulation results. Such ultrathin dual-mode vortex beam generator may find potential applications in wireless communication systems in microwave region.
Publisher Correction: Exploring the effect of UV-C radiation on earthworm and understanding its genomic integrity in the context of H2AX expression
Authors: Subbiahanadar Chelladurai Karthikeyan , Selvan Christyraj Jackson Durairaj , Azhagesan Ananthaselvam , Paulraj Vennila Devi , Jothimani Muralidharan , Yesudhason Beryl Vedha , Chellathurai Vasantha Niranjan , Ganesan Mijithra , Rajagopalan Kamarajan , Venkatachalam Saravanakumar , Benedict Johnson , John Samuel Jemima Kamalapriya , Selvan Christyraj Johnson Retnaraj Samuel
Published: March 2021

An amendment to this paper has been published and can be accessed via a link at the top of the paper.
Biological and biochemical diversity in different biotypes of spotted stem borer, Chilo partellus (Swinhoe) in India
Authors: Dhillon Mukesh K. , Tanwar Aditya K. , Kumar Sandeep , Hasan Fazil , Sharma Suraj , Jaba Jagdish , Sharma Hari C.
Published: March 2021

Because of variation in incidence and severity of damage by Chilo partellus (Swinhoe) in different geographical regions, it is difficult to identify stable sources of resistance against this pest. Therefore, the present studies were undertaken on biological attributes (damage in resistant and susceptible genotypes, survival and development) and biochemical profiles (amino acids and lipophilic compound) of C. partellus populations from eight geographical regions to understand it’s population structure in India. There was a significant variation in biological attributes and biochemical profiles of C. partellus populations from different geographical regions. Based on virulence and biological attributes, similarity index placed the C. partellus populations in five groups. Likewise, lipophilic and amino acid profiling also placed the C. partellus populations in five groups. However, the different clusters based on biological and biochemical attributes did not include populations from the same regions. Similarity index based on virulence, biological attributes, and amino acids and lipophilic profiles placed the C. partellus populations in six groups. The C. partellus populations from Hisar, Hyderabad, Parbhani and Coimbatore were distinct from each other, indicating that there are four biotypes of C. partellus in India. The results suggested that sorghum and maize genotypes need to be tested against these four populations to identify stable sources of resistance. However, there is a need for further studies to establish the restriction in gene flow through molecular approaches across geographical regions to establish the distinctiveness of different biotypes of C. partellus in India.
Author Correction: Measured glomerular filtration rate (GFR) significantly and rapidly decreases after radical cystectomy for bladder cancer
Authors: Rouanne Mathieu , Gaillard François , Meunier Matthias E. , Soorojebally Yanish , Phan Hoang , Slimani-Thevenet Hind , Jannot Anne-Sophie , Neuzillet Yann , Friedlander Gérard , Froissart Marc , Botto Henry , Houillier Pascal , Lebret Thierry , Courbebaisse Marie
Published: March 2021

An amendment to this paper has been published and can be accessed via a link at the top of the paper.
Publisher Correction: Analysis of the serial circulating tumor cell count during neoadjuvant chemotherapy in breast cancer patients
Authors: Gwark Sungchan , Kim Jisun , Kwon Nak-Jung , Kim Kyoung-Yeon , Kim YongNam , Lee Cham Han , Kim Young Hun , Kim Myoung Shin , Hong Sung Woo , Choi Mi Young , Jeon Byung Hee , Chang Suhwan , Yu Jonghan , Park Ji Yeon , Lee Hee Jin , Lee Sae Byul , Chung Il Yong , Ko Beom Seok , Kim Hee Jeong , Lee Jong Won , Son Byung Ho , Ahn Jin-Hee , Jung Kyung Hae , Kim Sung-Bae , Gong Gyung-Yub , Ahn Sei Hyun
Published: March 2021

An amendment to this paper has been published and can be accessed via a link at the top of the paper.