bluuebunny/crossref_metadata_2025 huggingface dataset:
Construction of a Class of High-Dimensional Discrete Chaotic Systems
Authors: Zang Hongyan , Liu Jianying , Li Jiu
Published: February 2021

In this paper, a class of n-dimensional discrete chaotic systems with modular operations is studied. Sufficient conditions for transforming this kind of discrete mapping into a chaotic mapping are given, and they are proven by the Marotto theorem. Furthermore, several special systems satisfying the criterion are given, the basic dynamic properties of the solution, such as the trace diagram and Lyapunov exponent spectrum, are analyzed, and the correctness of the chaos criterion is verified by numerical simulations.
Excision of Intramedullary Osteoid Osteomas in the Posterior Tibial Area via Medulloscopy: A Case Report
Authors: Park Jong Hoon , Jung Hae Woon , Jang Woo Young
Published: February 2021

Osteoid osteomas are benign bone-forming lesions that usually present in adolescence. In patients with severe pain and those not responding to medication, surgical treatment should be considered. Medulloscopy is a standard arthroscopic technique for visualizing the intramedullary canal of the tibia. Herein, we report two patients with intramedullary osteoid osteomas in the posterior area of the tibia, which were successfully treated using medulloscopy. Hence, medulloscopy is an effective minimally invasive method in patients with intramedullary osteoid osteomas in the posterior tibial area.
Partial Desalination of Saline Groundwater: Comparison of Nanofiltration, Reverse Osmosis and Membrane Capacitive Deionisation
Authors: Rosentreter Hanna , Walther Marc , Lerch André
Published: February 2021

Saline groundwater (SGW) is an alternative water resource. However, the concentration of sodium, chloride, sulphate, and nitrate in SGW usually exceeds the recommended guideline values for drinking water and irrigation. In this study, the partial desalination performance of three different concentrated SGWs were examined by pressure-driven membrane desalination technologies: nanofiltration (NF), brackish water reverse osmosis (BWRO), and seawater reverse osmosis (SWRO); in addition to one electrochemical-driven desalination technology: membrane capacitive deionisation (MCDI). The desalination performance was evaluated using the specific energy consumption (SEC) and water recovery, determined by experiments and simulations. The experimental results of this study show that the SEC for the desalination of SGW with a total dissolved solid (TDS) concentration of 1 g/L by MCDI and NF is similar and ranges between 0.2–0.4 kWh/m3 achieving a water recovery value of 35–70%. The lowest SECs for the desalination of SGW with a TDS concentration ≥2 g/L were determined by the use of BWRO and SWRO with 0.4–2.9 kWh/m3 for a water recovery of 40–66%. Even though the MCDI technique cannot compete with pressure-driven membrane desalination technologies at higher raw water salinities, this technology shows a high selectivity for nitrate and a high potential for flexible desalination applications.
Tool Wear Prediction in the Forming of Automotive DP980 Steel Sheet Using Statistical Sensitivity Analysis and Accelerated U-Bending Based Wear Test
Authors: Bang Junho , Park Namsu , Song Junghan , Kim Hong-Gee , Bae Gihyun , Lee Myoung-Gyu
Published: February 2021

The forming process of ultra-high-strength steel (UHSS) may cause premature damage to the tool surface due to the high forming pressure. The damage to and wear of the tool surface increase maintenance costs and deteriorate the surface quality of the sheet products. Hence, a reliable prediction model for tool wear can help in the efficient management of the quality and productivity of formed sheet products of UHSS. In this study, a methodology is proposed for predicting the wear behavior of stamping tools that are used in the forming process of DP980 steel sheet. Pin-on-disk tests were conducted based on the Taguchi method to develop the tool wear prediction model. Using statistical analysis based on the signal-to-noise (S/N) ratio and ANOVA result, the contact pressure and the sliding distance were selected as the major contact parameters for tool wear. The Archard wear model has a limitation in predicting the nonlinear behavior of tool wear. Therefore, the power-law nonlinear regression model as a function of the contact pressure and the sliding distance was constructed. To verify the reliability of the constructed tool wear prediction model, the U-draw bending tests were designed. The modified U-draw bending test, which accelerates tool wear, is newly designed to evaluate the tool wear for different contact pressures and sliding distances. The modified die generated a contact pressure four times higher than that of the conventional die from the finite element (FE) simulation results. The tool wear prediction model was validated by comparing the predicted results with the experimental results of DP980 sheets formed using the physical vapor deposition (PVD) CrN-coated STD11 tool steel.
Phase Formation and Microstructure Evolution of Al-5Si-0.8Mg Alloys with Different Mn Concentrations
Authors: Tian Ni , Wang Guangdong , Zhou Yiran , Liu Chuncheng , Liu Kun , Zhao Gang , Zuo Liang
Published: February 2021

Mg-containing high-Si aluminum alloys are heat-treatable alloys that are widely used in industry. Substantial attention has been paid to increasing the performance of such alloys by adding a small amount of Mn, which is an effective and common alloying element in aluminum alloys. In the present work, the solidification process of Mn-free Al-5Si-0.8Mg alloy and Al-5Si-0.8Mg-(0.45–1.97)Mn alloys are analyzed by the experimental results combined with thermodynamic calculation. The results showed that α-Al, Si, Mg2Si and π (Al8Mg3FeSi6) are predominant phases in the Mn-free Al-5Si-0.8Mg alloy while the π (Al8Mg3FeSi6) phase are transformed to α-Al(FeMn)Si phase with the addition of 0.45% Mn. With increasing Mn addition to 0.72%, the L→α-Al was replaced by L→α-Al(FeMn)Si and a primary α-Al(FeMn)Si phase appeared. Further increasing the Mn to 1.97%, the solidification reactions remained unchanged. However, the size and number of the primary α-Al(FeMn)Si phase gradually increased, while the divorced eutectic phenomenon of quaternary eutectic structure gradually weakened. Meanwhile, the Mg2Si phase in the quaternary eutectic structure gradually transformed from blocky to fine eutectic lamellar, and the quaternary eutectic structure was significantly refined. Primary blocky α-Al(FeMn)Si began to form when the Mn content was higher than 0.75%.
The Effect of Annealing on the Microstructure and Properties of Ultralow-Temperature Rolled Mg–2Y–0.6Nd–0.6Zr Alloy
Authors: Yu Hongmin , Li Wei , Tan Yun , Tan Yuanbiao
Published: February 2021

Mg–2Y–0.6Nd–0.6Zr alloy was first deformed by equal channel angular pressing (ECAP), then rolled and deformed under ultralow temperature conditions (liquid nitrogen immersion), and finally annealed. Optical microscopy (OM), electron backscatter diffraction technology (EBSD), and transmission electron microscopy (TEM) were used to analyze the evolution of the multiscale microstructure and changes in the mechanical properties of the alloy under ultralow temperatures and various annealing conditions. The results showed that the alloy treated with ECAP obtained fine grains, and a large number of fine twins were formed during the ultralow-temperature rolling process, which promoted the improvement of its hardness and strength and provided numerous preferential nucleation sites. The annealing made it easier to induce recrystallization and improve the recrystallization nucleation rate. The twin boundary produced by the alloy after ultralow-temperature rolling and the uniform fine grains formed by annealing resulted in excellent strength and plasticity of the alloy. The twins formed after rolling under ultralow temperatures were mainly {101-2} <1-011> tensile twins. The alloy had comprehensive mechanical properties with a tensile strength of 186.15 MPa and an elongation of 29% after annealing at 350 °C for 10 min.
Weld Geometry, Mechanical Properties, Microstructure and Chemical Composition of AA6063 in Tungsten Inert Gas Welding with Intermittent Controlled Wire Feeding Method
Authors: Baskoro Ario Sunar , Amat Mohammad Azwar , Simatupang Serafina Purti D. , Abrara Yala , Widyianto Agus
Published: February 2021

In this study, AA 6063 aluminum was joined using Tungsten Inert Gas (TIG) welding with a butt joint. The ER-5356 filler metal feeding method is used intermittently to find its effect on weld geometry, mechanical properties, microstructure, and chemical composition. The dimensions of the specimens used in this study were 120 mm × 50 mm, with a thickness of 3 mm. The ratio used is the configuration of the feed time and delay time. The length ratio of wire filler is varied from a ratio of 4 to 6. The top bead width and back bead width decreased by 17.66% and 40.33%, respectively. At a ratio of 6, it has the largest cross-sectional area of 295.37 ± 27.60 mm2. The results show that the general tensile strength was proportional to the ratio, but the difference was not significant, only around ±8 MPa. The microstructure formed in each weld has different characteristics; conversely, grains with a relatively coarse structure have decreased hardness values. The chemical composition test shows that the length ratio of filler metal feed directly correlates with magnesium’s average weight content, where the weight content of magnesium value tends to be homogeneous in all areas of weld metal (WM).
Microbial Processing of Waste Shredded PCBs for Copper Extraction Cum Separation—Comparing the Efficacy of Bacterial and Fungal Leaching Kinetics and Yields
Authors: Abhilash  , Tabassum Shirin , Ghosh Anirban , Meshram Pratima , van Hullebusch Eric D.
Published: February 2021

The recycling of electronic scrap is an important subject not only from an environmental aspect but also for recovering metal resources such as copper. In this work, the microbial extraction of copper and other metals (Cu, Ni, Co, Fe and Al) present in the depopulated and shredded printed circuit board (PCB) is elaborated. Bacterial strains of A. ferrooxidans, A. thiooxidans and a fungal strain, A. niger are used for copper extraction along with other metals from shredded PCBs. An optimum metal recovery of 93% Cu was obtained at 308 K, pH 2 using 8% pulp density in 10 days by a mixed culture of A. ferrooxidans and A. thiooxidans. Whereas using A. niger, a metal recovery of 66% Cu was reported using similar experimental conditions. The results show the higher potential ability of bacteria as compared to fungus to bioleach copper. Additionally, the kinetics and mechanism of copper bioleaching from this e-waste by the chemolithotrophs and heterotrophs were evaluated. The leach liquor obtained from the optimized leaching process was subjected to separation and purification of copper as >99% pure copper sulfate using Acorga M5640 by solvent extraction.
Dietary Fat and Protein Intake in Relation to Plasma Sphingolipids as Determined by a Large-Scale Lipidomic Analysis
Authors: Seah Jowy Yi Hoong , Chew Wee Siong , Torta Federico , Khoo Chin Meng , Wenk Markus R. , Herr Deron R. , Tai E. Shyong , van Dam Rob M.
Published: February 2021

Sphingolipid concentrations have been associated with risk of type 2 diabetes and cardiovascular diseases. Because sphingolipids can be synthesized de novo from saturated fatty acids (SFA), dietary fatty acids may affect plasma sphingolipid concentrations. We aimed to evaluate dietary fat and protein intakes in relation to circulating sphingolipid levels. We used cross-sectional data from 2860 ethnic Chinese Singaporeans collected from 2004–2007. Nutrient intakes were estimated on the basis of a validated 159-item food frequency questionnaire. We quantified 79 molecularly distinct sphingolipids in a large-scale lipidomic evaluation from plasma samples. Higher saturated fat intake was associated with higher concentrations of 16:1;O2 sphingolipids including ceramides, monohexosylcermides, dihexosylceramides, sphingomyelins, and sphingosine 1-phosphates. Higher polyunsaturated fat intake was associated with lower plasma long-chain ceramides and long-chain monohexosylcermide concentrations. Protein intake was inversely associated with concentrations of most subclasses of sphingolipids, with the exception of sphingolipids containing a 16:1;O2 sphingoid base. Lower intake of saturated fat and higher intake of polyunsaturated fat and protein may decrease plasma concentrations of several sphingolipid classes. These findings may represent a novel biological mechanism for the impact of nutrient intakes on cardio-metabolic health.
Comparative Effects of Di-(2-ethylhexyl)phthalate and Di-(2-ethylhexyl)terephthalate Metabolites on Thyroid Receptors: In Vitro and In Silico Studies
Authors: Kambia Nicolas , Séverin Isabelle , Farce Amaury , Dahbi Laurence , Dine Thierry , Moreau Emmanuel , Sautou Valérie , Chagnon Marie-Christine
Published: February 2021

Plasticizers added to polyvinylchloride (PVC) used in medical devices can be released into patients’ biological fluids. Di-(2-ethylhexyl)phthalate (DEHP), a well-known reprotoxic and endocrine disruptor, must be replaced by alternative compounds. Di-(2-ethylhexyl) terephthalate (DEHT) is an interesting candidate due to its lower migration from PVC and its lack of reprotoxicity. However, there is still a lack of data to support the safety of its human metabolites with regard to their hormonal properties in the thyroid system. The effects of DEHT metabolites on thyroid/hormone receptors (TRs) were compared in vitro and in silico to those of DEHP. The oxidized metabolites of DEHT had no effect on T3 receptors whereas 5-hydroxy-mono-(ethylhexyl)phthalate (5-OH-MEHP) appeared to be primarily an agonist for TRs above 0.2 µg/mL with a synergistic effect on T3. Monoesters (MEHP and mono-(2-ethylhexyl)terephthalate, MEHT) were also active on T3 receptors. In vitro, MEHP was a partial agonist between 10 and 20 µg/mL. MEHT was an antagonist at non-cytotoxic concentrations (2–5 µg/mL) in a concentration-dependent manner. The results obtained with docking were consistent with those of the T-screen and provide additional information on the preferential affinity of monoesters and 5-OH-MEHP for TRs. This study highlights a lack of interactions between oxidized metabolites and TRs, confirming the interest of DEHT.
Use of Clopidogrel and Proton Pump Inhibitors Alone or in Combinations in Persons with Diabetes in Denmark; Potential for CYP2C19 Genotype-Guided Drug Therapy
Authors: Westergaard Niels , Tarnow Lise , Vermehren Charlotte
Published: February 2021

Background: Clopidogrel and proton pump inhibitors (PPIs) are among the most used drugs in Denmark for which there exists pharmacogenomics (PGx)-based dosing guidelines and FDA annotations. In this study, we further scrutinized the use of clopidogrel and PPIs when prescriptions were redeemed from Danish Pharmacies alone or in combination in the Danish population and among persons with diabetes in Denmark. The focus deals with the potential of applying PGx-guided antiplatelet therapy taking both drug–drug interactions (DDI) and drug–gene interactions (DGI) into account. Methods: The Danish Register of Medicinal Product Statistics was the source to retrieve consumption data. Results: The consumption of PPIs and clopidogrel in terms of prevalence (users/1000 inhabitants) increased over a five-year period by 6.3% to 103.1 (PPIs) and by 41.7% to 22.1 (clopidogrel), respectively. The prevalence of the use of clopidogrel and PPIs in persons with diabetes are 3.8 and 2.1–2.8 times higher compared to the general population. When redeemed in combination, the prevalence increased to 4.7. The most used combination was clopidogrel and pantoprazole. Conclusions: The use of clopidogrel and PPIs either alone or in combination is quite widespread, in particular among the elderly and persons with diabetes. This further supports the emerging need of accessing and accounting for not only DDI but also for applying PGx-guided drug therapy in clinical decision making for antiplatelet therapy with clopidogrel having a particular focus on persons with diabetes and the elderly.
Untargeted Metabolic Profiling of 4-Fluoro-Furanylfentanyl and Isobutyrylfentanyl in Mouse Hepatocytes and Urine by Means of LC-HRMS
Authors: Montesano Camilla , Vincenti Flaminia , Fanti Federico , Marti Matteo , Bilel Sabrine , Togna Anna Rita , Gregori Adolfo , Di Rosa Fabiana , Sergi Manuel
Published: February 2021

The diffusion of new psychoactive substances (NPS) is highly dynamic and the available substances change over time, resulting in forensic laboratories becoming highly engaged in NPS control. In order to manage NPS diffusion, efficient and innovative legal responses have been provided by several nations. Metabolic profiling is also part of the analytical fight against NPS, since it allows to identify the biomarkers of drug intake which are needed for the development of suitable analytical methods in biological samples. We have recently reported the characterization of two new analogs of fentanyl, i.e., 4-fluoro-furanylfentanyl (4F-FUF) and isobutyrylfentanyl (iBF), which were found for the first time in Italy in 2019; 4F-FUF was identified for the first time in Europe and was notified to the European Early Warning System. The goal of this study was the characterization of the main metabolites of both drugs by in vitro and in vivo experiments. To this end, incubation with mouse hepatocytes and intraperitoneal administration to mice were carried out. Samples were analyzed by means of liquid chromatography-high resolution mass spectrometry (LC–HRMS), followed by untargeted data evaluation using Compound Discoverer software with a specific workflow, designed for the identification of the whole metabolic pattern, including unexpected metabolites. Twenty metabolites were putatively annotated for 4F-FUF, with the dihydrodiol derivative appearing as the most abundant, whereas 22 metabolites were found for iBF, which was mainly excreted as nor-isobutyrylfentanyl. N-dealkylation of 4F-FUF dihydrodiol and oxidation to carbonyl metabolites for iBF were also major biotransformations. Despite some differences, in general there was a good agreement between in vitro and in vivo samples.
Comprehensive Characterization of Bile Acids in Human Biological Samples and Effect of 4-Week Strawberry Intake on Bile Acid Composition in Human Plasma
Authors: Zhao Anqi , Zhang Liyun , Zhang Xuhuiqun , Edirisinghe Indika , Burton-Freeman Britt M. , Sandhu Amandeep K.
Published: February 2021

Primary bile acids (BAs) and their gut microbial metabolites have a role in regulating human health. Comprehensive characterization of BAs species in human biological samples will aid in understanding the interaction between diet, gut microbiota, and bile acid metabolism. Therefore, we developed a qualitative method using ultra-high performance liquid chromatography (UHPLC) coupled with a quadrupole time-of-flight (Q-TOF) to identify BAs in human plasma, feces, and urine samples. A quantitative method was developed using UHPLC coupled with triple quadrupole (QQQ) and applied to a previous clinical trial conducted by our group to understand the bile acid metabolism in overweight/obese middle-aged adults (n = 34) after four weeks strawberry vs. control intervention. The qualitative study tentatively identified a total of 81 BAs in human biological samples. Several BA glucuronide-conjugates were characterized for the first time in human plasma and/or urine samples. The four-week strawberry intervention significantly reduced plasma concentrations of individual secondary BAs, deoxycholic acid, lithocholic acid and their glycine conjugates, as well as glycoursodeoxycholic acid compared to control (p < 0.05); total glucuronide-, total oxidized-, total dehydroxyl-, total secondary, and total plasma BAs were also lowered compared to control (p < 0.05). The reduced secondary BAs concentrations suggest that regular strawberry intake modulates the microbial metabolism of BAs.
Identification of Quinone Degradation as a Triggering Event for Intense Pulsed Light-Elicited Metabolic Changes in Escherichia coli by Metabolomic Fingerprinting
Authors: Mao Qingqing , Liu Juer , Wiertzema Justin R. , Chen Dongjie , Chen Paul , Baumler David J. , Ruan Roger , Chen Chi
Published: February 2021

Intense pulsed light (IPL) is becoming a new technical platform for disinfecting food against pathogenic bacteria. Metabolic changes are deemed to occur in bacteria as either the causes or the consequences of IPL-elicited bactericidal and bacteriostatic effects. However, little is known about the influences of IPL on bacterial metabolome. In this study, the IPL treatment was applied to E. coli K-12 for 0–20 s, leading to time- and dose-dependent reductions in colony-forming units (CFU) and morphological changes. Both membrane lipids and cytoplasmic metabolites of the control and IPL-treated E. coli were examined by the liquid chromatography-mass spectrometry (LC-MS)-based metabolomic fingerprinting. The results from multivariate modeling and marker identification indicate that the metabolites in electron transport chain (ETC), redox response, glycolysis, amino acid, and nucleotide metabolism were selectively affected by the IPL treatments. The time courses and scales of these metabolic changes, together with the biochemical connections among them, revealed a cascade of events that might be initiated by the degradation of quinone electron carriers and then followed by oxidative stress, disruption of intermediary metabolism, nucleotide degradation, and morphological changes. Therefore, the degradations of membrane quinones, especially the rapid depletion of menaquinone-8 (MK-8), can be considered as a triggering event in the IPL-elicited metabolic changes in E. coli.
Chemical Elicitors Induce Rare Bioactive Secondary Metabolites in Deep-Sea Bacteria under Laboratory Conditions
Authors: de Felício Rafael , Ballone Patricia , Bazzano Cristina Freitas , Alves Luiz F. G. , Sigrist Renata , Infante Gina Polo , Niero Henrique , Rodrigues-Costa Fernanda , Fernandes Arthur Zanetti Nunes , Tonon Luciane A. C. , Paradela Luciana S. , Costa Renna Karoline Eloi , Dias Sandra Martha Gomes , Dessen Andréa , Telles Guilherme P. , da Silva Marcus Adonai Castro , Lima Andre Oliveira de Souza , Trivella Daniela Barretto Barbosa
Published: February 2021

Bacterial genome sequencing has revealed a vast number of novel biosynthetic gene clusters (BGC) with potential to produce bioactive natural products. However, the biosynthesis of secondary metabolites by bacteria is often silenced under laboratory conditions, limiting the controlled expression of natural products. Here we describe an integrated methodology for the construction and screening of an elicited and pre-fractionated library of marine bacteria. In this pilot study, chemical elicitors were evaluated to mimic the natural environment and to induce the expression of cryptic BGCs in deep-sea bacteria. By integrating high-resolution untargeted metabolomics with cheminformatics analyses, it was possible to visualize, mine, identify and map the chemical and biological space of the elicited bacterial metabolites. The results show that elicited bacterial metabolites correspond to ~45% of the compounds produced under laboratory conditions. In addition, the elicited chemical space is novel (~70% of the elicited compounds) or concentrated in the chemical space of drugs. Fractionation of the crude extracts further evidenced minor compounds (~90% of the collection) and the detection of biological activity. This pilot work pinpoints strategies for constructing and evaluating chemically diverse bacterial natural product libraries towards the identification of novel bacterial metabolites in natural product-based drug discovery pipelines.
Electrochemical Biosensors for the Detection of SARS-CoV-2 and Other Viruses
Authors: Imran Saim , Ahmadi Soha , Kerman Kagan
Published: February 2021

The last few decades have been plagued by viral outbreaks that present some of the biggest challenges to public safety. The current coronavirus (COVID-19) disease pandemic has exponentiated these concerns. Increased research on diagnostic tools is currently being implemented in order to assist with rapid identification of the virus, as mass diagnosis and containment is the best way to prevent the outbreak of the virus. Accordingly, there is a growing urgency to establish a point-of-care device for the rapid detection of coronavirus to prevent subsequent spread. This device needs to be sensitive, selective, and exhibit rapid diagnostic capabilities. Electrochemical biosensors have demonstrated these traits and, hence, serve as promising candidates for the detection of viruses. This review summarizes the designs and features of electrochemical biosensors developed for some past and current pandemic or epidemic viruses, including influenza, HIV, Ebola, and Zika. Alongside the design, this review also discusses the detection principles, fabrication techniques, and applications of the biosensors. Finally, research and perspective of biosensors as potential detection tools for the rapid identification of SARS-CoV-2 is discussed.
Lab-on-PCB and Flow Driving: A Critical Review
Authors: Perdigones Francisco
Published: February 2021

Lab-on-PCB devices have been developed for many biomedical and biochemical applications. However, much work has to be done towards commercial applications. Even so, the research on devices of this kind is rapidly increasing. The reason for this lies in the great potential of lab-on-PCB devices to provide marketable devices. This review describes the active flow driving methods for lab-on-PCB devices, while commenting on their main characteristics. Among others, the methods described are the typical external impulsion devices, that is, syringe or peristaltic pumps; pressurized microchambers for precise displacement of liquid samples; electrowetting on dielectrics; and electroosmotic and phase-change-based flow driving, to name a few. In general, there is not a perfect method because all of them have drawbacks. The main problems with regard to marketable devices are the complex fabrication processes, the integration of many materials, the sealing process, and the use of many facilities for the PCB-chips. The larger the numbers of integrated sensors and actuators in the PCB-chip, the more complex the fabrication. In addition, the flow driving-integrated devices increase that difficulty. Moreover, the biological applications are demanding. They require transparency, biocompatibility, and specific ambient conditions. All the problems have to be solved when trying to reach repetitiveness and reliability, for both the fabrication process and the working of the lab-on-PCB, including the flow driving system.
A Pot-Like Vibrational Microfluidic Rotational Motor
Authors: Uran Suzana , Malok Matjaž , Bratina Božidar , Šafarič Riko
Published: February 2021

Constructing a micro-sized microfluidic motor always involves the problem of how to transfer the mechanical energy out of the motor. The paper presents several experiments with pot-like microfluidic rotational motor structures driven by two perpendicular sine and cosine vibrations with amplitudes around 10 μm in the frequency region from 200 Hz to 500 Hz. The extensive theoretical research based on the mathematical model of the liquid streaming in a pot-like structure was the base for the successful real-life laboratory application of a microfluidic rotational motor. The final microfluidic motor structure allowed transferring the rotational mechanical energy out of the motor with a central axis. The main practical challenge of the research was to find the proper balance between the torque, due to friction in the bearings and the motor’s maximal torque. The presented motor, with sizes 1 mm by 0.6 mm, reached the maximal rotational speed in both directions between −15 rad/s to +14 rad/s, with the estimated maximal torque of 0.1 pNm. The measured frequency characteristics of vibration amplitudes and phase angle between the directions of both vibrational amplitudes and rotational speed of the motor rotor against frequency of vibrations, allowed us to understand how to build the pot-like microfluidic rotational motor.
Investigation on Microparticle Transport and Deposition Mechanics in Rhythmically Expanding Alveolar Chip
Authors: Dong Jun , Qiu Yan , Lv Huimin , Yang Yue , Zhu Yonggang
Published: February 2021

The transport and deposition of micro/nanoparticles in the lungs under respiration has an important impact on human health. Here, we presented a real-scale alveolar chip with movable alveolar walls based on the microfluidics to experimentally study particle transport in human lung alveoli under rhythmical respiratory. A new method of mixing particles in aqueous solution, instead of air, was proposed for visualization of particle transport in the alveoli. Our novel design can track the particle trajectories under different force conditions for multiple periods. The method proposed in this study gives us better resolution and clearer images without losing any details when mapping the particle velocities. More detailed particle trajectories under multiple forces with different directions in an alveolus are presented. The effects of flow patterns, drag force, gravity and gravity directions are evaluated. By tracing the particle trajectories in the alveoli, we find that the drag force contributes to the reversible motion of particles. However, compared to drag force, the gravity is the decisive factor for particle deposition in the alveoli.
Pathogenic Determinants of the Mycobacterium kansasii Complex: An Unsuspected Role for Distributive Conjugal Transfer
Authors: Tagini Florian , Pillonel Trestan , Bertelli Claire , Jaton Katia , Greub Gilbert
Published: February 2021

The Mycobacterium kansasii species comprises six subtypes that were recently classified into six closely related species; Mycobacterium kansasii (formerly M. kansasii subtype 1), Mycobacterium persicum (subtype 2), Mycobacterium pseudokansasii (subtype 3), Mycobacterium ostraviense (subtype 4), Mycobacterium innocens (subtype 5) and Mycobacterium attenuatum (subtype 6). Together with Mycobacterium gastri, they form the M. kansasii complex. M. kansasii is the most frequent and most pathogenic species of the complex. M. persicum is classically associated with diseases in immunosuppressed patients, and the other species are mostly colonizers, and are only very rarely reported in ill patients. Comparative genomics was used to assess the genetic determinants leading to the pathogenicity of members of the M. kansasii complex. The genomes of 51 isolates collected from patients with and without disease were sequenced and compared with 24 publicly available genomes. The pathogenicity of each isolate was determined based on the clinical records or public metadata. A comparative genomic analysis showed that all M. persicum, M. ostraviense, M innocens and M. gastri isolates lacked the ESX-1-associated EspACD locus that is thought to play a crucial role in the pathogenicity of M. tuberculosis and other non-tuberculous mycobacteria. Furthermore, M. kansasii was the only species exhibiting a 25-Kb-large genomic island encoding for 17 type-VII secretion system-associated proteins. Finally, a genome-wide association analysis revealed that two consecutive genes encoding a hemerythrin-like protein and a nitroreductase-like protein were significantly associated with pathogenicity. These two genes may be involved in the resistance to reactive oxygen and nitrogen species, a required mechanism for the intracellular survival of bacteria. Three non-pathogenic M. kansasii lacked these genes likely due to two distinct distributive conjugal transfers (DCTs) between M. attenuatum and M. kansasii, and one DCT between M. persicum and M. kansasii. To our knowledge, this is the first study linking DCT to reduced pathogenicity.
Streptococcal Infections in Marine Mammals
Authors: Numberger Daniela , Siebert Ursula , Fulde Marcus , Valentin-Weigand Peter
Published: February 2021

Marine mammals are sentinels for the marine ecosystem and threatened by numerous factors including infectious diseases. One of the most frequently isolated bacteria are beta-hemolytic streptococci. However, knowledge on ecology and epidemiology of streptococcal species in marine mammals is very limited. This review summarizes published reports on streptococcal species, which have been detected in marine mammals. Furthermore, we discuss streptococcal transmission between and adaptation to their marine mammalian hosts. We conclude that streptococci colonize and/or infect marine mammals very frequently, but in many cases, streptococci isolated from marine mammals have not been further identified. How these bacteria disseminate and adapt to their specific niches can only be speculated due to the lack of respective research. Considering the relevance of pathogenic streptococci for marine mammals as part of the marine ecosystem, it seems that they have been neglected and should receive scientific interest in the future.
Landscape Setting Drives the Microbial Eukaryotic Community Structure in Four Swedish Mountain Lakes over the Holocene
Authors: Capo Eric , Ninnes Sofia , Domaizon Isabelle , Bertilsson Stefan , Bigler Christian , Wang Xiao-Ru , Bindler Richard , Rydberg Johan
Published: February 2021

On the annual and interannual scales, lake microbial communities are known to be heavily influenced by environmental conditions both in the lake and in its terrestrial surroundings. However, the influence of landscape setting and environmental change on shaping these communities over a longer (millennial) timescale is rarely studied. Here, we applied an 18S metabarcoding approach to DNA preserved in Holocene sediment records from two pairs of co-located Swedish mountain lakes. Our data revealed that the microbial eukaryotic communities were strongly influenced by catchment characteristics rather than location. More precisely, the microbial communities from the two bedrock lakes were largely dominated by unclassified Alveolata, while the peatland lakes showed a more diverse microbial community, with Ciliophora, Chlorophyta and Chytrids among the more predominant groups. Furthermore, for the two bedrock-dominated lakes—where the oldest DNA samples are dated to only a few hundred years after the lake formation—certain Alveolata, Chlorophytes, Stramenopiles and Rhizaria taxa were found prevalent throughout all the sediment profiles. Our work highlights the importance of species sorting due to landscape setting and the persistence of microbial eukaryotic diversity over millennial timescales in shaping modern lake microbial communities.
DNA Metabarcoding for the Characterization of Terrestrial Microbiota—Pitfalls and Solutions
Authors: Francioli Davide , Lentendu Guillaume , Lewin Simon , Kolb Steffen
Published: February 2021

Soil-borne microbes are major ecological players in terrestrial environments since they cycle organic matter, channel nutrients across trophic levels and influence plant growth and health. Therefore, the identification, taxonomic characterization and determination of the ecological role of members of soil microbial communities have become major topics of interest. The development and continuous improvement of high-throughput sequencing platforms have further stimulated the study of complex microbiota in soils and plants. The most frequently used approach to study microbiota composition, diversity and dynamics is polymerase chain reaction (PCR), amplifying specific taxonomically informative gene markers with the subsequent sequencing of the amplicons. This methodological approach is called DNA metabarcoding. Over the last decade, DNA metabarcoding has rapidly emerged as a powerful and cost-effective method for the description of microbiota in environmental samples. However, this approach involves several processing steps, each of which might introduce significant biases that can considerably compromise the reliability of the metabarcoding output. The aim of this review is to provide state-of-the-art background knowledge needed to make appropriate decisions at each step of a DNA metabarcoding workflow, highlighting crucial steps that, if considered, ensures an accurate and standardized characterization of microbiota in environmental studies.
Study on Optimization of Tungsten Ore Flotation Wastewater Treatment by Response Surface Method (RSM)
Authors: Zhang Liping , Jiao Xiaofei , Wu Shengnian , Song Xuejing , Yao Ruihan
Published: February 2021

A large amount of collectors, inhibitors and modifiers such as oleic acid, water glass and sodium carbonate are added to the flotation processing of tungsten ore, resulting in the difficulty of the suspended solids (SS) with the residual water glass settling down in the flotation wastewater. The removal efficiency of the suspended solids is low with commonly used reagents like polyaluminium chloride (PAC) and polyacrylamide (PAM). This paper innovatively applied calcium chloride (CaCl2) to treat flotation wastewater and optimized the dosage of CaCl2, PAM and the pH value. The experimental results showed that when the dosage of 595 mg/L CaCl2 was combined with 21 mg/L PAM at pH 12, the turbidity removal ratio could reach 99.98%, and the residual turbidity of the supernatant was 0.23 NTU. The effluent could fully meet the requirements for reuse in industrial, urban miscellaneous and scenic environment water consumption (turbidity < 5 NTU). The quadratic equation model fitted with Design-Expert 8.0.6 software was constructed as Y = 91.52 + 8.68A + 1.11B − 1.02C − 1.7AB + 0.86AC + 0.06BC − 1.56A2 + 2.09B2 − 1.89C2, which had a good accuracy of the predicted responses versus the experimental data.
Natrophosphate, Arctic Mineral and Nuclear Waste Phase: Structure Refinements and Chemical Variability
Authors: Avdontceva Margarita , Krivovichev Sergey , Yakovenchuk Victor
Published: February 2021

The crystal structures of natural (Mt. Koashva, Khibiny alkaline massif, Kola Peninsula, Russian Arctic) and synthetic (obtained from an aqueous solution of sodium phosphate and sodium fluoride (1:1) by evaporation at room temperature (RT)) natrophosphate, Na7(PO4)2F·19H2O, have been investigated using single-crystal X-ray diffraction analysis. Natrophosphate and its synthetic analogue are cubic, Fd-3c, a = 27.6942(3) Å (natrophosphate at RT), a = 27.6241(4) Å (natrophosphate at 100 K), a = 28.1150(12) Å (synthetic analogue at RT), a = 27.9777(7) Å (synthetic analogue at 100 K). The crystal structure is based upon the super-octahedral [Na6(H2O)18F]5+ polycationic complexes consisting of six edge-linked Na6(OH2)5F octahedra sharing one common fluorine vertex. The A site is statistically occupied by Na and H2O with the prevalence of H2O with the refined occupancy factors O:Na equal to 0.53:0.47 for natrophosphate and 0.75:0.25 for its synthetic analogue. The coordination of the A site in synthetic natrophosphate is enlarged compared to the natural sample, which agrees well with its higher occupancy by H2O molecules. The general formula of natrophosphates can be written as Na6+xHxF(PO4)2·(19 + x)H2O, where x = 0–1. The chemical variability of natrophosphate allows to explain the discrepancies in its solubility reported by different authors. The information-based parameters of structural complexity are equal to 3.713 bit/atom and 2109.177 bit/cell that allows to classify natrophosphate as a structurally very complex mineral.
Effects of Briquetting and High Pyrolysis Temperature on Hydrolysis Lignin Char Properties and Reactivity in CO-CO2-N2 Conditions
Authors: Koskela Aki , Heikkilä Anne , Bergna Davide , Salminen Justin , Fabritius Timo
Published: February 2021

Carbonaceous reductants for pyrometallurgical applications are usually obtained from fossil-based sources. The most important properties of the reductants greatly depend on the application and the feeding of the reductant into the process. However, the mechanical strength, calorific value, fixed carbon content, and reactivity of the reductant are the properties that usually define the applicability of the reductant for different processes. The reactivity of the biochars is usually high in comparison to metallurgical coke, which may restrict the applicability of the biochar in reduction processes. One cause of the higher reactivity is the higher surface area of the biochars, which can be suppressed with agglomeration treatment, e.g., briquetting. In this work, hydrolysis lignin was used for slow pyrolysis experiments to produce biochars. The biochars were pyrolyzed in briquetted form and in as-received form at various temperatures. The reactivity values of the biochars were tested in dynamic reactivity tests in a CO-CO2-N2 gas atmosphere at temperatures of up to 1350 °C. It was found that the yield of the hydrolysis lignin char only decreased by 3.36 wt% when the pyrolysis temperature was elevated from 600 to 1200 °C, while a decrease in yield of 4.88 wt% occurred when the pyrolysis temperature was elevated from 450 to 600 °C. The mass loss of hydrolysis lignin biochar in the reactivity experiment in CO-CO2-N2 atmosphere was significantly decreased from 79.41 wt% to 56.80 wt% when the hydrolysis lignin was briquetted before the slow pyrolysis process and the temperature of the pyrolysis process was elevated from 600 to 1200 °C. This means that the mass loss of the material was suppressed by 22.61 wt% due to the higher pyrolysis temperature and briquetting process.
Genotoxic and Cytotoxic Properties of Zinc Oxide Nanoparticles Phyto-Fabricated from the Obscure Morning Glory Plant Ipomoea obscura (L.) Ker Gawl
Authors: Murali Mahadevamurthy , Anandan Satish , Ansari Mohammad Azam , Alzohairy Mohammad A. , Alomary Mohammad N. , Asiri Sarah Mousa Maadi , Almatroudi Ahmad , Thriveni M. C. , Singh Sudarshana Brijesh , Gowtham Hittanahallikoppal Gajendramurthy , Aiyaz Mohammed , Srinivasa Chandrashekar , Urooj Asna , Amruthesh Kestur Nagaraj
Published: February 2021

The study was undertaken to investigate the antioxidant, genotoxic, and cytotoxic potentialities of phyto-fabricated zinc oxide nanoparticles (ZnO-NPs) from Ipomoea obscura (L.) Ker Gawl. aqueous leaf extract. The UV-visible spectral analysis of the ZnO-NPs showed an absorption peak at 304 nm with a bandgap energy of 3.54 eV, which are characteristics of zinc nanoparticles. Moreover, the particles were of nano-size (~24.26 nm) with 88.11% purity and were agglomerated as observed through Scanning Electron Microscopy (SEM). The phyto-fabricated ZnO-NPs offered radical scavenging activity (RSA) in a dose-dependent manner with an IC50 of 0.45 mg mL−1. In addition, the genotoxicity studies of ZnO-NPs carried out on onion root tips revealed that the particles were able to significantly inhibit the cell division at the mitotic stage with a mitotic index of 39.49%. Further, the cytotoxic studies on HT-29 cells showed that the phyto-fabricated ZnO-NPs could arrest the cell division as early as in the G0/G1 phase (with 92.14%) with 73.14% cells showing early apoptotic symptoms after 24 h of incubation. The results of the study affirm the ability of phyto-fabricated ZnO-NPs from aqueous leaf extract of I. obscura is beneficial in the cytotoxic application.
Synthesis, Antitumor and Antibacterial Studies of New Shortened Analogues of (KLAKLAK)2-NH2 and Their Conjugates Containing Unnatural Amino Acids
Authors: Jaber Sirine , Iliev Ivan , Angelova Tsvetelina , Nemska Veronica , Sulikovska Inna , Naydenova Emilia , Georgieva Nelly , Givechev Ivan , Grabchev Ivo , Danalev Dancho
Published: February 2021

(1) Background: (KLAKLAK)2 is a representative of the antimicrobial peptide group which also shows good anticancer properties. (2) Methods: Herein, we report synthesis using SPPS and characterization by HPLC/MS of a series of shortened analogues of (KLAKLAK)2. They contain single sequence KLAKLAK as C-terminal amides. In addition, substitution of some natural amino acids with unnatural β-Ala and nor-Leu is realized. In addition, these structures are conjugated with second pharmacophore with well proven anticancer properties 1,8-naphthalimide or caffeic acid. Cytotoxicity, antiproliferative effect and antimicrobial activity of newly synthesized structures were studied. (3) Results: The obtained experimental results reveal significant selective index for substances with common chemical structure KLβAKLβAK-NH2. The antibacterial properties of newly synthesized analogues at two different concentrations 10 μM and 20 μM, were tested against Gram-negative microorganisms Escherichia coli K12 407. Only two of the studied compounds KLAKLAK-NH2 and the one conjugated with second pharmacophore 1,8-naphthalimide and unnatural amino acid nor-Leu showed moderate activity against tested strains at concentration of 20 μM. (4) Conclusions: The obtained results reveal that the introducing of 1,8-naphthalimideGly- and Caf- increase the cytotoxicity and antiproliferative activity of the peptides but not their selectivity. Only two compounds KLAKLAK-NH2 and 1,8-naphthalimideGKnLAKnLAK-NH2 show moderate activity against Escherichia coli K12 at low concentration of 20 μM.
Antioxidant and Anti-Inflammatory Effects of White Mulberry (Morus alba L.) Fruits on Lipopolysaccharide-Stimulated RAW 264.7 Macrophages
Authors: Yu Jae Sik , Lim Sung Ho , Lee Seoung Rak , Choi Chang-Ik , Kim Ki Hyun
Published: February 2021

In this study, the protective effects of white mulberry (Morus alba) fruits on lipopolysaccharide (LPS)-stimulated RAW 264.7 macrophages were investigated. The ethanol (EtOH) extract of white mulberry fruits and its derived fractions contained adequate total phenolic and flavonoid contents, with good in vitro antioxidant radical scavenging activity. The extract and fractions also markedly inhibited ROS generation and antioxidant activity. After treatment with the EtOH extract and its fractions, LPS stimulation-induced elevated nitric oxide (NO) production was restored, which was primarily mediated by downregulation of inducible NO synthase expression. A total of 20 chemical constituents including flavonoids, steroids, and phenolics were identified in the fractions using ultra-high-performance liquid chromatography (UHPLC)-quadrupole time-of-flight (QTOF) high-resolution mass spectrometry (HRMS). These findings provide experimental evidence of the protective effects of white mulberry fruit extract against oxidative stress and inflammatory responses, suggesting their nutraceutical and pharmaceutical potential as natural antioxidant and anti-inflammatory agents.
Spectroscopic, X-ray Diffraction and Density Functional Theory Study of Intra- and Intermolecular Hydrogen Bonds in Ortho-(4-tolylsulfonamido)benzamides
Authors: Mphahlele Malose J. , Onwu Eugene E. , Maluleka Marole M.
Published: February 2021

The conformations of the title compounds were determined in solution (NMR and UV-Vis spectroscopy) and in the solid state (FT-IR and XRD), complemented with density functional theory (DFT) in the gas phase. The nonequivalence of the amide protons of these compounds due to the hindered rotation of the C(O)–NH2 single bond resulted in two distinct resonances of different chemical shift values in the aromatic region of their 1H-NMR spectra. Intramolecular hydrogen bonding interactions between the carbonyl oxygen and the sulfonamide hydrogen atom were observed in the solution phase and solid state. XRD confirmed the ability of the amide moiety of this class of compounds to function as a hydrogen bond acceptor to form a six-membered hydrogen bonded ring and a donor simultaneously to form intermolecular hydrogen bonded complexes of the type N–H···O=S. The distorted tetrahedral geometry of the sulfur atom resulted in a deviation of the sulfonamide moiety from co-planarity of the anthranilamide scaffold, and this geometry enabled oxygen atoms to form hydrogen bonds in higher dimensions.