bluuebunny/crossref_metadata_2025 huggingface dataset:
Variation in coupling across neural and cardiac systems of regulation is linked to markers of anxiety risk in preschool
Authors: Peoples Sarah G. , Davis Elizabeth L. , Brooker Rebecca J.
Published: March 2024

Both cortical and parasympathetic systems are believed to regulate emotional arousal in the service of healthy development. Systemic coordination, or coupling, between putative regulatory functions begins in early childhood. Yet the degree of coupling between cortical and parasympathetic systems in young children remains unclear, particularly in relation to the development of typical or atypical emotion function. We tested whether cortical (ERN) and parasympathetic (respiratory sinus arrhythmia [RSA]) markers of regulation were coupled during cognitive challenge in preschoolers (N = 121). We found no main effect of RSA predicting ERN. We then tested children’s typical and atypical emotion behavior (context-appropriate/context-inappropriate fear, anxiety symptoms, neuroendocrine reactivity) as moderators of early coupling in an effort to link patterns of coupling to adaptive emotional development. Negative coupling (i.e., smaller ERN, more RSA suppression or larger ERN, less RSA suppression) at age 3 was associated with greater atypical and less typical emotion behaviors, indicative of greater risk. Negative age 3 coupling was also visible for children who had greater Generalized Anxiety Disorder symptoms and blunted cortisol reactivity at age 5. Results suggest that negative coupling may reflect a maladaptive pattern across regulatory systems that is identifiable during the preschool years.
Bridlington Boulevard Revisited: New Insights into Pit and Post-hole Cremations in Neolithic Britain
Authors: Rowland Jake T. , Thompson Jess E.
Published: March 2024

The majority of excavated human remains from Neolithic Britain emanate from monumental sites. However, it is increasingly recognized that multiple funerary practices are often attested within these monuments, and that diverse treatment of the dead is evident contemporaneously at non-monumental sites. In this paper, we highlight such variation in non-monumental funerary practices in Neolithic Britain (c. 4000–2500 bc) through the biographical study of an assemblage from a large post-hole at Bridlington Boulevard, Yorkshire. Through osteological and taphonomic analysis of the human bones and technological and microwear analysis of the accompanying axehead, we infer complex funerary processes, with the expediently manufactured axehead potentially featuring in the funerary rites and subsequent post-raising before being deposited in the feature. Bridlington Boulevard represents one element of a varied funerary complex—cremations in pits and post-holes—at a time when most individuals were not deposited in monuments, or indeed were not deposited at all. Compiling these non-monumental cremations across Britain causes us to look beyond categorizing these assemblages as funerary contexts, and instead suggests important cosmological associations and forces were brought together in pit and post-and-human cremation deposits.
Moving conservation agriculture from principles to a performance-based production system
Authors: Cordeau Stéphane
Published: March 2024

Conservation agriculture (CA) is an approach to farming that is defined by three principles: (1) minimal soil disturbance (no-till), (2) crop diversity in time and space, and (3) soil coverage by crop residues and/or cover crops. These principles provide a roadmap to protect and improve soil. However, the narrow criteria for defining CA may fail to account for tradeoffs between soil health and other ecosystem services. A literature review of meta-analyses dealing with CA and an online survey in France were conducted to explore the implementation and performances of CA. Research on CA systems has focused on crop productivity and soil quality whereas research on other dimensions of cropping system sustainability are lacking. The effects of CA on other aspects of sustainability such as biodiversity and profitability are less prevalent in the literature. The online survey results show that 63% of respondents thought that CA helps reduce pesticide use, 91% that CA improves water use efficiency, and 77% that CA helps to store carbon and achieve the objectives of the 4 per 1000 international initiative. Given the prevalence and widespread support for CA, we advocate for moving CA from its current definition based on the means toward a definition that includes performance-based metrics that address different ecosystem services. CA has potential to help address challenges associated with climate change, biodiversity loss, and water pollution, but opportunities may be missed without developing performance targets that go beyond soil conservation.
Notoginsenoside R1 promotes Lgr5+ stem cell and epithelium renovation in colitis mice via activating Wnt/β-Catenin signaling
Authors: Yu Zhi-lun , Gao Rui-yang , Lv Cheng , Geng Xiao-long , Ren Yi-jing , Zhang Jing , Ren Jun-yu , Wang Hao , Ai Fang-bin , Wang Zi-yi , Zhang Bei-bei , Liu Dong-hui , Yue Bei , Wang Zheng-tao , Dou Wei
Published: March 2024

Inflammatory bowel disease (IBD) is characterized by persistent damage to the intestinal barrier and excessive inflammation, leading to increased intestinal permeability. Current treatments of IBD primarily address inflammation, neglecting epithelial repair. Our previous study has reported the therapeutic potential of notoginsenoside R1 (NGR1), a characteristic saponin from the root of Panax notoginseng, in alleviating acute colitis by reducing mucosal inflammation. In this study we investigated the reparative effects of NGR1 on mucosal barrier damage after the acute injury stage of DSS exposure. DSS-induced colitis mice were orally treated with NGR1 (25, 50, 125 mg·kg−1·d−1) for 10 days. Body weight and rectal bleeding were daily monitored throughout the experiment, then mice were euthanized, and the colon was collected for analysis. We showed that NGR1 administration dose-dependently ameliorated mucosal inflammation and enhanced epithelial repair evidenced by increased tight junction proteins, mucus production and reduced permeability in colitis mice. We then performed transcriptomic analysis on rectal tissue using RNA-sequencing, and found NGR1 administration stimulated the proliferation of intestinal crypt cells and facilitated the repair of epithelial injury; NGR1 upregulated ISC marker Lgr5, the genes for differentiation of intestinal stem cells (ISCs), as well as BrdU incorporation in crypts of colitis mice. In NCM460 human intestinal epithelial cells in vitro, treatment with NGR1 (100 μM) promoted wound healing and reduced cell apoptosis. NGR1 (100 μM) also increased Lgr5+ cells and budding rates in a 3D intestinal organoid model. We demonstrated that NGR1 promoted ISC proliferation and differentiation through activation of the Wnt signaling pathway. Co-treatment with Wnt inhibitor ICG-001 partially counteracted the effects of NGR1 on crypt Lgr5+ ISCs, organoid budding rates, and overall mice colitis improvement. These results suggest that NGR1 alleviates DSS-induced colitis in mice by promoting the regeneration of Lgr5+ stem cells and intestinal reconstruction, at least partially via activation of the Wnt/β-Catenin signaling pathway.
The mechanism underlying correlation of particulate matter-induced ferroptosis with inflammasome activation and iron accumulation in macrophages
Authors: Park Minkyung , Park Sujeong , Choi Yumin , Cho Young-Lai , Kim Min Jeong , Park Young-Jun , Chung Su Wol , Lee Heedoo , Lee Seon-Jin
Published: March 2024

Particulate matter (PM) is a global environmental hazard, which affects human health through free radical production, cell death induction, and immune responses. PM activates inflammasomes leading to excessive inflammatory responses and induces ferroptosis, a type of cell death. Despite ongoing research on the correlation among PM-induced ferroptosis, immune response, and inflammasomes, the underlying mechanism of this relationship has not been elucidated. In this study, we demonstrated the levels of PM-induced cell death and immune responses in murine macrophages, J774A.1 and RAW264.7, depending on the size and composition of particulate matter. PM2.5, with extraction ions, induced significant levels of cell death and immune responses; it induces lipid peroxidation, iron accumulation, and reactive oxygen species (ROS) production, which characterize ferroptosis. In addition, inflammasome-mediated cell death occurred owing to the excessive activation of inflammatory responses. PM-induced iron accumulation activates ferroptosis and inflammasome formation through ROS production; similar results were observed in vivo. These results suggest that the link between ferroptosis and inflammasome formation induced by PM, especially PM2.5 with extraction ions, is established through the iron-ROS axis. Moreover, this study can effectively facilitate the development of a new therapeutic strategy for PM-induced immune and respiratory diseases.
PLEKHM2 deficiency induces impaired mitochondrial clearance and elevated ROS levels in human iPSC-derived cardiomyocytes
Authors: Zhang Jianchao , Peng Ying , Fu Wanrong , Wang Ruifei , Cao Jinhua , Li Shuang , Tian Xiaoxu , Li Zhonggen , Hua Chongpei , Zhai Yafei , Liu Yangyang , Liu Mengduan , Sun Jihong , Li Xiaowei , Zhao Xiaoyan , Dong Jianzeng
Published: March 2024

Pleckstrin homology domain-containing family M member 2 (PLEKHM2) is an essential adaptor for lysosomal trafficking and its homozygous truncation have been reported to cause early onset dilated cardiomyopathy (DCM). However, the molecular mechanism of PLEKHM2 deficiency in DCM pathogenesis and progression is poorly understood. Here, we generated an in vitro model of PLEKHM2 knockout (KO) induced pluripotent stem cell-derived cardiomyocytes (hiPSC-CMs) to elucidate the potential pathogenic mechanism of PLEKHM2-deficient cardiomyopathy. PLEKHM2-KO hiPSC-CMs developed disease phenotypes with reduced contractility and impaired calcium handling. Subsequent RNA sequencing (RNA-seq) analysis revealed altered expression of genes involved in mitochondrial function, autophagy and apoptosis in PLEKHM2-KO hiPSC-CMs. Further molecular experiments confirmed PLEKHM2 deficiency impaired autophagy and resulted in accumulation of damaged mitochondria, which triggered increased reactive oxygen species (ROS) levels and decreased mitochondrial membrane potential (Δψm). Importantly, the elevated ROS levels caused oxidative stress-induced damage to nearby healthy mitochondria, resulting in extensive Δψm destabilization, and ultimately leading to impaired mitochondrial function and myocardial contractility. Moreover, ROS inhibition attenuated oxidative stress-induced mitochondrial damage, thereby partially rescued PLEKHM2 deficiency-induced disease phenotypes. Remarkably, PLEKHM2-WT overexpression restored autophagic flux and rescued mitochondrial function and myocardial contractility in PLEKHM2-KO hiPSC-CMs. Taken together, these results suggested that impaired mitochondrial clearance and increased ROS levels play important roles in PLEKHM2-deficient cardiomyopathy, and PLEKHM2-WT overexpression can improve mitochondrial function and rescue PLEKHM2-deficient cardiomyopathy.
Spontaneous Small Biskyrmions in a Centrosymmetric Rare-Earth Kagome Ferrimagnet
Authors: Zuo Shulan , Qiao Kaiming , Wang Zhan , Zhang Ying , Jiang Chengbao , Shen Baogen
Published: March 2024

Magnetic skyrmions with nontrivial topologies have great potential to serve as memory cells in novel spintronic devices. Small skyrmions were theoretically and experimentally confirmed to be generated under the influence of external fields in ferrimagnetic films via Dzyaloshinskii–Moriya interactions (DMIs). However, this topological state has yet to be verified in ferrimagnetic crystals, especially in the absence of external fields and DMIs. Here, spontaneous biskyrmions were directly observed in the Tb0.2Gd0.8Co2 ferrimagnetic crystal with a Kagome lattice using Lorentz transmission electron microscopy. The high-density biskyrmions exhibited a small size (approximately 50 nm) over a wide temperature range, were closely related to subtle magnetic interaction competition, and coexisted with some broken stripes that could be easily converted into zero-field biskyrmions by utilizing proper field-cooling manipulation. These results can be used to establish a platform for investigating functional sub-50-nm skyrmions in ferrimagnetic crystals and to facilitate advanced applications in magnetic devices.
Uptake of COVID-19 vaccinations amongst 3,433,483 children and young people: meta-analysis of UK prospective cohorts
Authors: Aldridge Sarah J. , Agrawal Utkarsh , Murphy Siobhán , Millington Tristan , Akbari Ashley , Almaghrabi Fatima , Anand Sneha N. , Bedston Stuart , Goudie Rosalind , Griffiths Rowena , Joy Mark , Lowthian Emily , de Lusignan Simon , Patterson Lynsey , Robertson Chris , Rudan Igor , Bradley Declan T. , Lyons Ronan A. , Sheikh Aziz , Owen Rhiannon K.
Published: March 2024

SARS-CoV-2 infection in children and young people (CYP) can lead to life-threatening COVID-19, transmission within households and schools, and the development of long COVID. Using linked health and administrative data, we investigated vaccine uptake among 3,433,483 CYP aged 5–17 years across all UK nations between 4th August 2021 and 31st May 2022. We constructed national cohorts and undertook multi-state modelling and meta-analysis to identify associations between demographic variables and vaccine uptake. We found that uptake of the first COVID-19 vaccine among CYP was low across all four nations compared to other age groups and diminished with subsequent doses. Age and vaccination status of adults living in the same household were identified as important risk factors associated with vaccine uptake in CYP. For example, 5–11 year-olds were less likely to receive their first vaccine compared to 16–17 year-olds (adjusted Hazard Ratio [aHR]: 0.10 (95%CI: 0.06–0.19)), and CYP in unvaccinated households were less likely to receive their first vaccine compared to CYP in partially vaccinated households (aHR: 0.19, 95%CI 0.13–0.29).
Quantum spin liquid signatures in monolayer 1T-NbSe2
Authors: Zhang Quanzhen , He Wen-Yu , Zhang Yu , Chen Yaoyao , Jia Liangguang , Hou Yanhui , Ji Hongyan , Yang Huixia , Zhang Teng , Liu Liwei , Gao Hong-Jun , Jung Thomas A. , Wang Yeliang
Published: March 2024

Quantum spin liquids (QSLs) are in a quantum disordered state that is highly entangled and has fractional excitations. As a highly sought-after state of matter, QSLs were predicted to host spinon excitations and to arise in frustrated spin systems with large quantum fluctuations. Here we report on the experimental observation and theoretical modeling of QSL signatures in monolayer 1T-NbSe2, which is a newly emerging two-dimensional material that exhibits both charge-density-wave (CDW) and correlated insulating behaviors. By using scanning tunneling microscopy and spectroscopy (STM/STS), we confirm the presence of spin fluctuations in monolayer 1T-NbSe2 by observing the Kondo resonance as monolayer 1T-NbSe2 interacts with metallic monolayer 1H-NbSe2. Subsequent STM/STS imaging of monolayer 1T-NbSe2 at the Hubbard band energy further reveals a long-wavelength charge modulation, in agreement with the spinon modulation expected for QSLs. By depositing manganese-phthalocyanine (MnPc) molecules with spin S = 3/2 onto monolayer 1T-NbSe2, new STS resonance peaks emerge at the Hubbard band edges of monolayer 1T-NbSe2. This observation is consistent with the spinon Kondo effect induced by a S = 3/2 magnetic impurity embedded in a QSL. Taken together, these experimental observations indicate that monolayer 1T-NbSe2 is a new promising QSL material.
Cavity-coupled telecom atomic source in silicon
Authors: Johnston Adam , Felix-Rendon Ulises , Wong Yu-En , Chen Songtao
Published: March 2024

Novel T centers in silicon hold great promise for quantum networking applications due to their telecom band optical transitions and the long-lived ground state electronic spins. An open challenge for advancing the T center platform is to enhance its weak and slow zero phonon line (ZPL) emission. In this work, by integrating single T centers with a low-loss, small mode-volume silicon photonic crystal cavity, we demonstrate an enhancement of the fluorescence decay rate by a factor of F = 6.89. Efficient photon extraction enables the system to achieve an average ZPL photon outcoupling rate of 73.3 kHz under saturation, which is about two orders of magnitude larger than the previously reported value. The dynamics of the coupled system is well modeled by solving the Lindblad master equation. These results represent a significant step towards building efficient T center spin-photon interfaces for quantum information processing and networking applications.
TANGO6 regulates cell proliferation via COPI vesicle-mediated RPB2 nuclear entry
Authors: Feng Zhi , Liu Shengnan , Su Ming , Song Chunyu , Lin Chenyu , Zhao Fangying , Li Yang , Zeng Xianyan , Zhu Yong , Hou Yu , Ren Chunguang , Zhang Huan , Yi Ping , Ji Yong , Wang Chao , Li Hongtao , Ma Ming , Luo Lingfei , Li Li
Published: March 2024

Coat protein complex I (COPI) vesicles mediate the retrograde transfer of cargo between Golgi cisternae and from the Golgi to the endoplasmic reticulum (ER). However, their roles in the cell cycle and proliferation are unclear. This study shows that TANGO6 associates with COPI vesicles via two transmembrane domains. The TANGO6 N- and C-terminal cytoplasmic fragments capture RNA polymerase II subunit B (RPB) 2 in the cis-Golgi during the G1 phase. COPI-docked TANGO6 carries RPB2 to the ER and then to the nucleus. Functional disruption of TANGO6 hinders the nuclear entry of RPB2, which accumulates in the cytoplasm, causing cell cycle arrest in the G1 phase. The conditional depletion or overexpression of TANGO6 in mouse hematopoietic stem cells results in compromised or expanded hematopoiesis. Our study results demonstrate that COPI vesicle-associated TANGO6 plays a role in the regulation of cell cycle progression by directing the nuclear transfer of RPB2, making it a potential target for promoting or arresting cell expansion.
Enhanced assembly of bacteriophage T7 produced in cell-free reactions under simulated microgravity
Authors: Lehr François-Xavier , Pavletić Bruno , Glatter Timo , Heimerl Thomas , Moeller Ralf , Niederholtmeyer Henrike
Published: March 2024

On-demand biomanufacturing has the potential to improve healthcare and self-sufficiency during space missions. Cell-free transcription and translation reactions combined with DNA blueprints can produce promising therapeutics like bacteriophages and virus-like particles. However, how space conditions affect the synthesis and self-assembly of such complex multi-protein structures is unknown. Here, we characterize the cell-free production of infectious bacteriophage T7 virions under simulated microgravity. Rotation in a 2D-clinostat increased the number of infectious particles compared to static controls. Quantitative analyses by mass spectrometry, immuno-dot-blot and real-time PCR showed no significant differences in protein and DNA contents, suggesting enhanced self-assembly of T7 phages in simulated microgravity. While the effects of genuine space conditions on the cell-free synthesis and assembly of bacteriophages remain to be investigated, our findings support the vision of a cell-free synthesis-enabled “astropharmacy”.
Mechanisms and energetics of calcium aluminosilicate glass dissolution through ab initio molecular dynamics-metadynamics simulations
Authors: Liu Meili , Ruiz Pestana Luis
Published: March 2024

The dissolution of silicate glasses has implications in diverse fields ranging from the immobilization of radioactive waste to the development of sustainable alternatives to Portland cement. Here, we used ab initio molecular dynamics simulations biased with well-tempered metadynamics to study Si-O-T bridge dissociation in calcium aluminosilicate glasses, crucial for understanding their dissolution. In a departure from the conventional Michalske-Freiman model, our findings reveal a nucleophilic substitution reaction mechanism characterized by a short-lived, 5-fold coordinated Si intermediate or transition state, depending on the Si bridge coordination, with a near-trigonal bipyramidal geometry. We find that the reorganization required for reaching this state causes the activation energy barriers to be dependent on the Si bridge coordination, with Si Q3 species serving as the rate-limiting step in the dissolution reaction. Our findings not only challenge long-standing theoretical models but also pave the way for more accurate and comprehensive frameworks for understanding the dissolution of silicate glasses in various applications.
GO2Sum: generating human-readable functional summary of proteins from GO terms
Authors: Giri Swagarika Jaharlal , Ibtehaz Nabil , Kihara Daisuke
Published: March 2024

Understanding the biological functions of proteins is of fundamental importance in modern biology. To represent a function of proteins, Gene Ontology (GO), a controlled vocabulary, is frequently used, because it is easy to handle by computer programs avoiding open-ended text interpretation. Particularly, the majority of current protein function prediction methods rely on GO terms. However, the extensive list of GO terms that describe a protein function can pose challenges for biologists when it comes to interpretation. In response to this issue, we developed GO2Sum (Gene Ontology terms Summarizer), a model that takes a set of GO terms as input and generates a human-readable summary using the T5 large language model. GO2Sum was developed by fine-tuning T5 on GO term assignments and free-text function descriptions for UniProt entries, enabling it to recreate function descriptions by concatenating GO term descriptions. Our results demonstrated that GO2Sum significantly outperforms the original T5 model that was trained on the entire web corpus in generating Function, Subunit Structure, and Pathway paragraphs for UniProt entries.
Structural analysis of phosphoribosyltransferase-mediated cell wall precursor synthesis in Mycobacterium tuberculosis
Authors: Gao Shan , Wu Fangyu , Gurcha Sudagar S. , Batt Sarah M. , Besra Gurdyal S. , Rao Zihe , Zhang Lu
Published: March 2024

In Mycobacterium tuberculosis, Rv3806c is a membrane-bound phosphoribosyltransferase (PRTase) involved in cell wall precursor production. It catalyses pentosyl phosphate transfer from phosphoribosyl pyrophosphate to decaprenyl phosphate, to generate 5-phospho-β-ribosyl-1-phosphoryldecaprenol. Despite Rv3806c being an attractive drug target, structural and molecular mechanistic insight into this PRTase is lacking. Here we report cryogenic electron microscopy structures for Rv3806c in the donor- and acceptor-bound states. In a lipidic environment, Rv3806c is trimeric, creating a UbiA-like fold. Each protomer forms two helical bundles, which, alongside the bound lipids, are required for PRTase activity in vitro. Mutational and functional analyses reveal that decaprenyl phosphate and phosphoribosyl pyrophosphate bind the intramembrane and extramembrane cavities of Rv3806c, respectively, in a distinct manner to that of UbiA superfamily enzymes. Our data suggest a model for Rv3806c-catalysed phosphoribose transfer through an inverting mechanism. These findings provide a structural basis for cell wall precursor biosynthesis that could have potential for anti-tuberculosis drug development.
HYADES - A Global Archive of Annual Maxima Daily Precipitation
Authors: Vargas Godoy Mijael Rodrigo , Papalexiou Simon Michael , Markonis Yannis
Published: March 2024

Time series of annual maxima daily precipitation are crucial for understanding extreme precipitation behavior and its shifts toward nonstationarity with global warming. Extreme precipitation insight assists hydraulic infrastructure design, water resource management, natural hazard prevention, and climate change adaptation. However, not even a third of the records are of sufficient length, and the number of active stations keeps decreasing. Herein, we present HYADES: archive of yearly maxima of daily precipitation records, a global dataset derived from the Global Historical Climatology Network database of daily records (GHCN-Daily). The HYADES dataset contains records from 39 206 stations (heterogeneously distributed worldwide) with record lengths varying from 16 to 200 years between 1805 and 2023. HYADES was extracted through a methodology designed to accurately capture the true maxima even in the presence of missing values within the records. The method’s thresholds were determined and evaluated through Monte Carlo simulations. Our approach demonstrates a 96.73% success rate in detecting the true maxima while preserving time series statistical properties of interest (L-moments and temporal monotonic trend).
Transcriptomic profiling of Poa pratensis L. under treatment of various phytohormones
Authors: Meng Chen , Peng Xiaomei , Zhang Yu , Pedro García-Caparrós , Li Yumeng , Zhang Yanni , Duan Yuanwen , Sun Xudong
Published: March 2024

Poa pratensis L. (Poaceae) is a valuable grass across the north hemisphere, inhabiting diverse environments with wide altitudinal span, where ubiquitous various kinds of stresses. Phytohormones would be helpful to improve tolerance to abiotic and biotic stresses, but the responses of transcriptome regulation of P. pratensis to exogenous phytohormones application remain unclear. In this study, we explored the alteration of plant physiological responses by the application of phytohormones. Aiming to achieve this knowledge, we got full-length transcriptome data 42.76 Gb, of which 74.9% of transcripts were completed. Then used 27 samples representing four treatments conducted at two time points (1 h and 6 h after application) to generate RNA-seq data. 371 and 907 common DEGs were identified in response to four phytohormones application, respectively, these DEGs were involved in “plant hormone signal transduction”, “carbon metabolism” and “plant-pathogen interaction”. Finally, P. pratensis basic research can gain valuable information regarding the responses to exogenous application of phytohormones in physiological indicators and transcriptional regulations in order to facilitate the development of new cultivars.
Theoretical electronic structure with spin–orbit coupling effect of the molecules SrAt and BaAt for laser cooling studies
Authors: Madi Amal , El-Kork Nayla , Zeid Israa , Korek Mahmoud
Published: March 2024

Ab initio CASSCF/MRCI + Q calculations have been used to investigate the electronic structure and transition properties of the alkaline earth astatine molecules SrAt and BaAt. The adiabatic potential energy curves have been computed and plotted for the low-lying electronic states in the representations 2S+1Λ+/− and Ω(±) (with and without spin–orbit coupling effect). The spectroscopic and vibrational constants have been deduced for the corresponding bound states. An analysis of the Franck–Condon factors, the Einstein Coefficients, and the branching ratios among different vibrational levels has shown that both SrAt and BaAt molecules are suitable candidates for Doppler and Sysphus laser cooling. Experimental laser cooling schemes and conditions for these two molecules have been proposed. These results may pave the way for new spectroscopic and laser cooling experiments of alkaline earth astatine molecules.
Mapping the habitat refugia of Isidella elongata under climate change and trawling impacts to preserve Vulnerable Marine Ecosystems in the Mediterranean
Authors: Georges Vincent , Vaz Sandrine , Carbonara Pierluigi , Fabri Marie-Claire , Fanelli Emanuela , Follesa Maria Cristina , Garofalo Germana , Gerovasileiou Vasilis , Jadaud Angélique , Maiorano Porzia , Marin Pilar , Mytilineou Chryssi , Orejas Covadonga , Del Mar Otero Maria , Smith Chris J. , Thasitis Ioannis , Lauria Valentina
Published: March 2024

The bamboo-coral Isidella elongata is a key habitat-forming species in the deep Mediterranean Sea. This alcyonacean is listed as an indicator of Vulnerable Marine Ecosystems (VMEs) and as Critically Endangered due to bottom trawling impacts. In this work, a modeling approach was used to predict and map the habitat suitability of I. elongata in the Mediterranean Sea under current environmental conditions. Occurrence data were modeled as a function of environmental parameters. Using climate change scenarios and fishing effort data, the risk of climate change and fisheries impacts on habitat suitability were estimated, and climate refugia were identified. A drastic loss of habitat is predicted, and climate change scenarios suggest a loss of 60% of suitable habitats by 2100. In the central Mediterranean, climate refugia overlapped with active fishing grounds. This study represents the first attempt to identify hot spots for the protection of soft bottom Vulnerable Marine Ecosystems for the entire Mediterranean Sea, and highlights areas most at risk from trawling. This work is relevant to the objectives of the EU Marine Strategy Framework and Maritime Spatial Planning Directives, the Biodiversity Strategy for 2030 regarding priority areas for conservation.
Fabrication of green anti-microbial and anti-static cement building bricks
Authors: Reffaee Abeer , Saied Mona , hamieda Shimaa Farag , Amin Sh. K.
Published: March 2024

The design cement mix of grade 350 was created in accordance with Egyptian Standards by partially substituting the fine aggregate with WPVC waste in various weight percentages (10, 20, 30, 40, 50, 75, and 100%). A control mix with 0% replacement was also prepared. The W/C ratio was about 0.5 for all mixes. Compressive, flexure strength, bulk density, and absorption tests were studied. For WPVC replacement, until 30%, compressive strength and flexure strength are acceptable with respect to standerds. Thermal treatment at 200 °C improves the compressive strength, flexure strength and water absorption for 20% WPVC only. The dielectric properties of all cement paste mixes before and after heat treatment, over a frequency range (0.1–106 Hz), were measured as a function of frequency. For dielectric properties and conductivity, an improvement was obtained until 30% WPVC. After this percentage, the dielectric properties and the conductivity got worse. So, cement paste with 30% WPVC as replacement of sand is the optimum ratio with conductivity in range of 10−12 S/cm, which is a good choice for antistatic cement paste applications (10−10–10−12 S/cm). The antimicrobial efficacy of the prepared cement samples of WPVC concentrations (0, 20 and 30) % were studied, the number of grown microbial colonies decreased for all the samples compared to control tap water and decreased by introducing WPVC into the cement paste sample. So, it is recommended to use these samples in places that should be carefully shielded from bacterial infections and static electric charge dangers.
The association between dietary intake of branched-chain amino acids and odds and severity of rheumatoid arthritis
Authors: Soleimani Damaneh Mohadeseh , Aryaeian Naheed , Khajoenia Shole , Azadbakht Leila , Hosseini-Baharanchi Fatemeh Sadat
Published: March 2024

This case–control study investigated the link between dietary branched-chain amino acids (BCAAs) and the risk and severity of rheumatoid arthritis (RA). We assessed dietary BCAA intake in 95 RA patients and 190 matched controls using a food frequency questionnaire. We also assessed the disease severity using the disease activity score 28 (DAS-28), ESR, VAS, morning stiffness, and tender and swollen joints. Higher BCAA intake, expressed as a percentage of total protein, was significantly associated with increased risk of RA for total BCAAs (OR 2.14, 95% CI 1.53–3.00, P < 0.001), leucine (OR 2.40, 95% CI 1.70–3.38, P < 0.001), isoleucine (OR 2.04, 95% CI 1.46–2.85, P < 0.001), and valine (OR 1.87, 95% CI 1.35–2.59, P < 0.001). These associations remained significant even after adjusting for potential confounders (P < 0.001). However, BCAA intake did not show any significant association with RA severity in either crude or multivariate models (P > 0.05). Our findings suggest that higher dietary BCAA intake may contribute to the development of RA, but further research is needed to confirm these observations and explore the underlying mechanisms.
Potential fumigant toxicity of essential oils against Sitotroga cerealella (Olivier) (Lepidoptera: Gelechiidae) and its egg parasitoid Trichogramma evanescens (Hymenoptera: Trichogrammatidae)
Authors: Elbehery Huda H. , Ibrahim Samar S.
Published: March 2024

Sitotroga cerealella is a serious pest of a wide range of stored cereal grains. An essential element of an integrated pest control approach is the application of plant oils as a substitute for chemical insecticides. This study aimed to investigate the fumigant toxicity of Allium sativum and Mentha piperita essential oils against S. cerealella adult moths and the egg parasitoid Trichogramma evanescens. Gas chromatography–mass spectrometry analyses detected that Diallyl trisulfide (37.97%) and dl-Menthol (47.67%) as main compounds in A. sativum and M. piperita, respectively. The results showed that, A. sativum at 10.0, 5.0, and 2.5 µL/L air resulted in 100% insect mortality after 24 h exposure. The concentrations of 10.0 and 5.0 µL/L air of M. piperita oil resulted in 100 and 96% insect mortality, respectively. The parasitoid adult emergence in the F1 reduced when exposed to LC99 of A. sativum and M. piperita oils by 10.89 and 9.67%, respectively. Also, the parasitism of emerged parasitoid decreased by 9.25 and 5.84% (class I-harmless), respectively. Therefore A. sativum and M. piperita have the potential to be used as bio-fumigant for the management of S. cerealella and can be used alongside the T. evanescens in integrated pest management.
Gα12 and endoplasmic reticulum stress-mediated pyroptosis in a single cycle of dextran sulfate-induced mouse colitis
Authors: Tak Jihoon , An Quanxi , Lee Sang Gil , Lee Chang Hoon , Kim Sang Geon
Published: March 2024

Inflammatory bowel disease (IBD) pathogenesis involves complex inflammatory events and cell death. Although IBD involves mainly necrosis in the digestive tract, pyroptosis has also been recognized. Nonetheless, the underlying basis is elusive. Gα12/13 overexpression may affect endoplasmic reticulum (ER) stress. This study examined how Gα12/13 and ER stress affect pyroptosis using dextran sulfate sodium (DSS)-induced colitis models. Gα12/13 levels were increased in the distal and proximal colons of mice exposed to a single cycle of DSS, as accompanied by increases of IRE1α, ATF6, and p-PERK. Moreover, Il-6, Il-1β, Ym1, and Arg1 mRNA levels were increased with caspase-1 and IL-1β activation, supportive of pyroptosis. In the distal colon, RIPK1/3 levels were enhanced to a greater degree, confirming necroptosis. By contrast, the mice subjected to three cycles of DSS treatments showed decreases of Gα12/13, as accompanied by IRE1α and ATF6 suppression, but increases of RIPK1/3 and c-Cas3. AZ2 treatment, which inhibited Gα12, has an anti-pyroptotic effect against a single cycle of colitis. These results show that a single cycle of DSS-induced colitis may cause ER stress-induced pyroptosis as mediated by Gα12 overexpression in addition to necroptosis, but three cycles model induces only necroptosis, and that AZ2 may have an anti-pyroptotic effect.
Larvicidal activity of Acacia nilotica extracts against Culex pipiens and their suggested mode of action by molecular simulation docking
Authors: Baz Mohamed M. , El-Shourbagy Nancy M. , Alkhaibari Abeer Mousa , Gattan Hattan S. , Alruhaili Mohammed H. , Selim Abdelfattah , Radwan Ibrahim Taha
Published: March 2024

Mosquitoes are one of the deadliest and most hazardous animals on Earth, where they transmit several diseases that kill millions of people annually. There is an ongoing search almost everywhere in the world for more effective and contemporary ways to control mosquitoes other than pesticides. Phytochemicals are affordable, biodegradable biological agents that specialize in eliminating pests that represent a risk to public health. The effectiveness of Acacia nilotica methanol and aqueous leaf extracts against 4th instar larvae was evaluated. The results revealed that the methanol extract of A. nilotica had a noticeable influence on the mortality rate of mosquito larvae, especially at high concentrations. Not only did the mortality rate rise significantly, but the hatching of the mosquito eggs was potentially suppressed.Terpenes, fatty acids, esters, glycosides, pyrrolidine alkane, piperazine, and phenols were the most prevalent components in the methanol extract, while the aqueous extract of A. nilotica exclusively showed the presence of fatty acids. The insecticidal susceptibility tests of both aqueous and alcoholic extract of A. nilotica confirmed that the Acacia plant could serves as a secure and efficient substitute for chemical pesticides because of its promising effect on killing larvae and egg hatching delaying addition to their safety as one of the natural pesticides. Molecular docking study was performed using one of the crucial and life-controlling protein targets, fatty acid binding protein (FABP) and the most active ingredients as testing ligands to describe their binding ability. Most of the structurally related compounds to the co-crystallized ligand, OLA, like hexadecanoic acid furnished high binding affinity to the target protein with very strong and stable intermolecular hydrogen bonding and this is quite similar to OLA itself. Some other structural non-related compounds revealed extraordinarily strong binding abilities like Methoxy phenyl piperazine. Most of the binding reactivities of the majortested structures are due to high structure similarity between the positive control, OLA, and tested compounds. Such structure similarity reinforced with the binding abilities of some detected compounds in the A. nilotica extract could present a reasonable interpretation for its insecticidal activity via deactivating the FABP protein. The FABP4 enzyme inhibition activity was assessed for of both methanolic and aqueous of acacia plant extract and the inhibition results of methanol extract depicted noticeable potency if compared to orlistat, with half-maximal inhibitory concentration (IC50) of 0.681, and 0.535 µg/ml, respectively.
Albendazole metabolites excretion in human saliva as a biomarker to assess treatment compliance in mass drug administration (MDA) anthelmintic programs
Authors: Nieves E. , Cimino R. , Krolewiecki A. , Juarez M. , Lanusse C. , Alvarez L. , Ceballos L.
Published: March 2024

Soil-transmitted-helminth (STH) infections continue to be a persistent global public health problem. Control strategies for STH have been based on the use of mass drug administration (MDA). Coverage and compliance assessment is critical to understanding the true effectiveness of albendazole (ABZ) in those MDA programs. The aims of this work were to characterize the pattern of albendazole and metabolites excretion in human saliva, and to develop a saliva-based biomarker (HPLC drug/metabolite detection) useful to accurately estimate the coverage/compliance in MDA campaigns. The study subjects were 12 healthy volunteers treated with a single oral dose of ABZ (400 mg). Saliva and blood (dried blood spot, DBS) samples were taken previously and between 2 and 72 h post-treatment. The samples were analyzed by HPLC with UV detection, C18 reversed-phase column. ABZ sulphoxide was the main analyte recovered up to 72 h p.t. in blood and saliva. The concentration profiles measured in the blood (DBS samples) were higher (P < 0.05) than those in saliva, however, this ABZ-metabolite was recovered longer in saliva. The in vivo measurement of drugs/metabolites in saliva samples from ABZ-treated volunteers offers strong scientific evidence to support the use of saliva as a valid biological sample for assessing compliance in MDA programs.
Identification of Hedyotis diffusa Willd-specific mRNA–miRNA–lncRNA network in rheumatoid arthritis based on network pharmacology, bioinformatics analysis, and experimental verification
Authors: Jiang Jing , Huang Meng , Zhang Si-Si , Wu Yong-Gang , Li Xiao-Long , Deng Hui , Qili Xin-Yu , Chen Jian-Lin , Meng Yao , Sun Wen-Kui
Published: March 2024

Hedyotisdiffusa Willd (HDW) possesses heat-clearing, detoxification, anti-cancer, and anti-inflammatory properties. However, its effects on rheumatoid arthritis (RA) remain under-researched. In this study, we identified potential targets of HDW and collected differentially expressed genes of RA from the GEO dataset GSE77298, leading to the construction of a drug-component-target-disease regulatory network. The intersecting genes underwent GO and KEGG analysis. A PPI protein interaction network was established in the STRING database. Through LASSO, RF, and SVM-RFE algorithms, we identified the core gene MMP9. Subsequent analyses, including ROC, GSEA enrichment, and immune cell infiltration, correlated core genes with RA. mRNA–miRNA–lncRNA regulatory networks were predicted using databases like TargetScan, miRTarBase, miRWalk, starBase, lncBase, and the GEO dataset GSE122616. Experimental verification in RA-FLS cells confirmed HDW’s regulatory impact on core genes and their ceRNA expression. We obtained 11 main active ingredients of HDW and 180 corresponding targets, 2150 RA-related genes, and 36 drug-disease intersection targets. The PPI network diagram and three machine learning methods screened to obtain MMP9, and further analysis showed that MMP9 had high diagnostic significance and was significantly correlated with the main infiltrated immune cells, and the molecular docking verification also showed that MMP9 and the main active components of HDW were well combined. Next, we predicted 6 miRNAs and 314 lncRNAs acting on MMP9, and two ceRNA regulatory axes were obtained according to the screening. Cellular assays indicated HDW inhibits RA-FLS cell proliferation and MMP9 protein expression dose-dependently, suggesting HDW might influence RA’s progression by regulating the MMP9/miR-204-5p/MIAT axis. This innovative analytical thinking provides guidance and reference for the future research on the ceRNA mechanism of traditional Chinese medicine in the treatment of RA.
Predicting overstriding with wearable IMUs during treadmill and overground running
Authors: Baker Lauren M. , Yawar Ali , Lieberman Daniel E. , Walsh Conor J.
Published: March 2024

Running injuries are prevalent, but their exact mechanisms remain unknown largely due to limited real-world biomechanical analysis. Reducing overstriding, the horizontal distance that the foot lands ahead of the body, may be relevant to reducing injury risk. Here, we leverage the geometric relationship between overstriding and lower extremity sagittal segment angles to demonstrate that wearable inertial measurement units (IMUs) can predict overstriding during treadmill and overground running in the laboratory. Ten recreational runners matched their strides to a metronome to systematically vary overstriding during constant-speed treadmill running and showed similar overstriding variation during comfortable-speed overground running. Linear mixed models were used to analyze repeated measures of overstriding and sagittal segment angles measured with motion capture and IMUs. Sagittal segment angles measured with IMUs explained 95% and 98% of the variance in overstriding during treadmill and overground running, respectively. We also found that sagittal segment angles measured with IMUs correlated with peak braking force and explained 88% and 80% of the variance during treadmill and overground running, respectively. This study highlights the potential for IMUs to provide insights into landing and loading patterns over time in real-world running environments, and motivates future research on feedback to modify form and prevent injury.
Grass species with potential for rangelands restoration in northern Mexico: an assessment with environmental niche modeling
Authors: Álvarez-Holguín Alan , Morales-Nieto Carlos Raúl , Corrales-Lerma Raúl , Ochoa-Rivero Jesús Manuel , Ponce-García Omar Castor , Prieto-Amparán Jesús Alejandro , Vega-Mares José Humberto , Villarreal-Guerrero Federico
Published: March 2024

Environmental niche modeling (ENM) has emerged as a promising tool for identifying grass species with potential for rangeland restoration. This approach can detect suitable areas and environments where these species can be planted. In this study, we employed ENM to estimate the potential distribution range of 50 grass species of the grasslands and shrublands of northern Mexico. The outcome of the ENM served to identify grass species with potential for restoration in Mexico, especially those not commonly used for that purpose in the past. Results suggested the possibility of selecting seven grass species with the potential for revegetating degraded grasslands, nine for shrublands, and six for alkaline soils. This research provides insights into the environmental adaptations of different grass species distributed in the rangelands of northern Mexico. Ecologists, conservation planners, researchers, and range managers could use these outcomes and the maps of the potential distribution ranges as supportive information to conduct effective restoration efforts. In turn, this can assist in increasing the probability of success of future rangelands restoration programs, which are often costly in terms of financial investments and labor.
Non-destructive visualization of internal structural changes in humidified magnesium oxide tablets using X-ray computed tomography
Authors: Amemiya Takahiro , Suzuki Kazuhiro , Tomita Takashi
Published: March 2024

Detailed examinations of the internal structure of tablets are imperative for comprehending their formulation, physical attributes, and ensuring their safe utilization. While X-ray computed tomography (CT) is valuable for noninvasively analyzing internal structural changes, the influence of humidity on these structural changes remains unexplored. Accordingly, we aimed to assess the viability of X-ray CT in non-destructively evaluating the internal structure of humidified magnesium oxide (MgO) tablets. MgO tablets were subjected to conditions of 40 °C and 75% humidity for 7 days, weighed pre- and post-humidification, and subsequently stored at room temperature (22–27 °C) until day 90. Their internal structure was evaluated using X-ray CT. We observed a substantial increase in the weight of MgO tablets concomitant with moisture absorption, with minimal changes observed upon storage at room temperature. The skewness reduced immediately post-moisture absorption, remained almost the same post-storage at room temperature, and failed to revert to pre-humidification levels during the storage period. These findings highlight the utility of X-ray CT as an effective tool for non-destructive, three-dimensional, and detailed evaluation of internal structural transformations in MgO tablets.