bluuebunny/crossref_metadata_2025 huggingface dataset:
Assessment of serum proprotein convertase subtilisin/kexin type 9 in pediatric sepsis syndrome
Authors: Mousa Suzan Omar , Afifi Mohamed Farouk , Hassuna Noha Anwar , Yassa Michael Fekry , Moness Hend Mohamed
Published: July 2024

Sepsis is a life-threatening condition that arises when the body's response to infection causes injury to its tissues and organs. Proprotein convertase subtilisin/kexin type 9 (PCSK9) is an enzyme released in response to the drop in cholesterol level occurring in sepsis. Our study aimed to evaluate the prognostic role of serum Proprotein convertase subtilisin/kexin type 9 (PCSK9) level in children with sepsis and severe sepsis. Sixty children were included in this study. They were divided into two groups: 30 children in the sepsis group and 30 in the severe sepsis group. Another 30 apparently healthy children were included as a control group. Blood samples were withdrawn from all included children for complete blood count (CBC), renal function tests (RFT), liver function tests (LFT), LDL-cholesterol (LDL-C), blood culture, and serum PCSK9. In this study, PCSK9 and LDL-C were higher in the two sepsis groups than in the control group (p < 0.05). They were also higher in the severe sepsis group than the sepsis group and in the non-survivors than in the survivors (p < 0.05). PCSK9 was positively correlated with length of hospital stay in surviving children (r = 0.67, p = 0.001) and had predicted significant hematological dysfunction (adjusted B =  − 96.95, p = 0.03). In conclusion, the PCSK9 assay can be used as a biomarker for bad prognosis in children suffering from clinical sepsis.
Peak response regularization for localization
Authors: Yu Jiawei , Yao Jinzhen , Zhao Chuangxin , Zhao Xianhong , Hu Qintao
Published: July 2024

Deep convolutional neural networks approaches often assume that the feature response has a Gaussian distribution with target-centered peak response, which can be used to guide the target location and classification. Nevertheless, such an assumption is implausible when there is progressive interference from other targets and/or background noise, which produces sub-peaks on the tracking response map and causes model drift. In this paper, we propose a feature response regularization approach for sub-peak response suppression and peak response enforcement and aim to handle progressive interference systematically. Our approach, referred to as Peak Response Regularization (PRR), applies simple-yet-efficient method to aggregate and align discriminative features, which convert local extremal response in discrete feature space to extremal response in continuous space, which enforces the localization and representation capability of convolutional features. Experiments on human pose detection, object detection, object tracking, and image classification demonstrate that PRR improves the performance of image tasks with a negligible computational cost.
Adsorbent based on MOF-5/cellulose aerogel composite for adsorption of organic dyes from wastewater
Authors: Shiri Mohammad , Hosseinzadeh Majid , Shiri Soudeh , Javanshir Shahrzad
Published: July 2024

Industries persistently contribute to environmental pollution by releasing a multitude of harmful substances, including organic dyes, which represent a significant hazard to human health. As a result, the demand for effective adsorbents in wastewater treatment technology is steadily increasing so as to mitigate or eradicate these environmental risks. In response to this challenge, we have developed an advanced composite known as MOF-5/Cellulose aerogel, utilizing the Pampas plant as a natural material in the production of cellulose aerogel. Our investigation focused on analyzing the adsorption and flexibility characteristics of this novel composite for organic dye removal. Additionally, we conducted tests to assess the aerogel’s reusability and determined that its absorption rate remained consistent, with the adsorption capacity of the MOF-5/cellulose aerogel composite only experiencing a marginal 5% reduction. Characterization of the material was conducted through XRD analysis, revealing the cubic structure of MOF aerogel particles under scanning electron microscopy. Our study unequivocally demonstrates the superior adsorption capabilities of the MOF-5/cellulose aerogel composite, particularly evident in its efficient removal of acid blue dye, as evaluated meticulously using UV–Vis spectrophotometric techniques. Notably, our findings revealed an impressive 96% absorption rate for the anionic dye under acidic pH conditions. Furthermore, the synthesized MOF-5/cellulose aerogel composite exhibited Langmuir isotherm behavior and followed pseudo-second-order kinetics during the absorption process. With its remarkable absorption efficiency, MOF-5/cellulose aerogel composites are poised to emerge as leading adsorbents for water purification and various other applications.
Study on the failure mechanism of high-temperature granite under two cooling modes
Authors: Li Chun , Feng Gan , Zhang Xinran , Zhang Chunwang , Hu Yaoqing , Meng Tao
Published: July 2024

In the geothermal development of hot dry rock (HDR), both the drilling of the wellbore and the heat exchange of the heat reservoir involve the effects of different cold and hot conditions on the high-temperature rock mass. The testing machine for rock mechanics was used to conduct a uniaxial compression test and carry out micro testing on the treated samples; furthermore, with the help of scanning electron microscopy the fracture mechanism of granite subjected to different temperatures and cooling methods was studied. The results show: (1) With the gradual increase in temperature, the compressive strength of granite under the two cooling methods gradually decreases. (2) The failure modes of the samples under the two cooling methods are mainly shear failure of the "Y" type. The degree of damage of the sample under water cooling is significantly greater than that under natural cooling. Electron micrographs could confirm these results. (3) It can be obtained by testing the mineral composition and element changes of granite at different temperatures. When the temperature reaches 600℃, its change is more pronounced. The results of this study can provide a theoretical reference for the failure of the wellbore and the degree of fracture of the thermal reservoir rock mass during geothermal development.
Human gastric microbiota analysis of refractory H. pylori infection
Authors: Huang Xianfeng , Zhang Da-ya , Li Da , Lv Yanting , Chen Shiju , Bai Feihu
Published: July 2024

H. pylori infection is gaining increasing attention, but detailed investigations into its impact on gastric microbiota remain limited. We collected gastric mucosa samples from 47 individuals divided into three groups: 1. Group HP: patients with initial positive H. pylori infection (25 cases); 2. Group ck: H. pylori-negative patients (14 cases); 3. Group DiffHP: patients with refractory H. pylori infection (8 cases). The samples were analyzed using 16S rDNA sequencing and functional prediction with PICRUSt. Group HP showed differences in flora distribution and function compared to Group ck, while Group DiffHP overlapped with Group HP. The abundances of Aeromonas piscicola, Shewanella algae, Vibrio plantisponsor, Aeromonas caviae, Serratia marcescens, Vibrio parahaemolyticus, Microbacterium lacticum, and Prevotella nigrescens were significantly reduced in both Group DiffHP and Group HP compared to Group ck. Vibrio shilonii was reduced only in Group DiffHP compared to Group ck, while Clostridium perfringens and Paracoccus marinus were increased only in Group DiffHP. LEfSe analysis revealed that Clostridium perfringens and Paracoccus marinus were enriched, whereas Vibrio shilonii was reduced in Group DiffHP compared to Group ck at the species level. In individuals with refractory H. pylori infection, the gastric microbiota exhibited enrichment in various human diseases, organic systems, and metabolic pathways (amino acid metabolism, carbohydrate metabolism, transcription, replication and repair, cell cycle pathways, and apoptosis). Patients with multiple failed H. pylori eradication exhibited significant changes in the gastric microbiota. An increase in Clostridium perfringens and Paracoccus marinus and a decrease in Vibrio shilonii appears to be characteristic of refractory H. pylori infection.
Risks of dairy derived excipients in medications for lactose intolerant and cow milk protein allergic patients
Authors: Figueiredo Alexandra , Auxtero Maria Deolinda , Santo Maria , Casimiro Andreia , Costa Isabel Margarida
Published: July 2024

The use of lactose and cow milk protein (CMP) as potential allergens in pharmaceuticals and their ability to cause allergic reactions remains a significant concern in medicine. Lactose, a common pharmaceutical excipient due to its inert, inexpensive, and stable properties, is found in many prescription-only and over-the-counter medications. However, despite their widespread use, individuals with lactose intolerance (LI) or cow milk protein allergy (CMPA) may experience adverse reactions to these excipients. This study investigated the prevalence of lactose and other dairy-derived ingredients in pharmaceuticals marketed in Portugal. Using the Summary of Product Characteristics (SmPC) from the INFOMED database, various medications, including analgesics, antipyretics, non-steroidal anti-inflammatory drugs (NSAIDs), and antiasthmatics, were analyzed. Results showed a high prevalence of dairy-derived excipients, particularly in antiasthmatic drugs (62.6%) and NSAIDs (39%). Although CMP are not explicitly mentioned in SmPCs, the presence of lactose as an ingredient poses a risk of cross-contamination. The findings emphasize the need for healthcare professionals to be aware of potential allergens in medications and the importance of developing lactose-free alternatives to ensure the safety of patients with LI and CMPA. Further research is required to assess the safety and implications of lactose in medicines for these populations.
The role and mechanism of action of miR-483-3p in mediating the effects of IGF-1 on human renal tubular epithelial cells induced by high glucose
Authors: Abudoureyimu Maidina , Tayier Talaiti , Zhang Ling
Published: July 2024

This study aimed to elucidate the influence of miR-483-3p on human renal tubular epithelial cells (HK-2) under high glucose conditions and to understand its mechanism. Human proximal tubular epithelial cells (HK-2) were exposed to 50 mmol/L glucose for 48 h to establish a renal tubular epithelial cell injury model, denoted as the high glucose group (HG group). Cells were also cultured for 48 h in a medium containing 5.5 mmol/L glucose, serving as the low glucose group. Transfection was performed in various groups: HK-2 + low glucose (control group), high glucose (50 mM) (HG group), high glucose + miR-483-3p mimics (HG + mimics group), high glucose +miR-483-3p inhibitor (HG + inhibitor group), and corresponding negative controls. Real-time quantitative polymerase chain reaction (qPCR) assessed the mRNA expression of miR-483-3p, bax, bcl-2, and caspase-3. Western blot determined the corresponding protein levels. Proliferation was assessed using the CCK-8 assay, and cell apoptosis was analyzed using the fluorescence TUNEL method. Western blot and Masson’s staining were conducted to observe alterations in cell fibrosis post miR-483-3p transfection. Furthermore, a dual-luciferase assay investigated the targeting relationship between miR-483-3p and IGF-1. The CCK8 assay demonstrated that the HG + mimics group inhibited HK-2 cell proliferation, while the fluorescent TUNEL method revealed induced cell apoptosis in this group. Conversely, the HG + inhibitor group promoted cell proliferation and suppressed cell apoptosis. The HG + mimics group upregulated mRNA and protein expression of pro-apoptotic markers (bax and caspase-3), while downregulating anti-apoptotic marker (bcl-2) expression. In contrast, the HG + inhibitor group showed opposite effects. Collagen I and FN protein levels were significantly elevated in the HG + mimics group compared to controls (P < 0.05). Conversely, in the HG + inhibitor group, the protein expression of Collagen I and FN was notably reduced compared to the HG group (P < 0.05). The dual luciferase reporter assay confirmed that miR-483-3p could inhibit the luciferase activity of IGF-1’s 3′-UTR region (P < 0.05). miR-483-3p exerts targeted regulation on IGF-1, promoting apoptosis and fibrosis in renal tubular epithelial cells induced by high glucose conditions.
A rhinopithecus swarm optimization algorithm for complex optimization problem
Authors: Zhou Guoyuan , Wang Dong , Zhou Guoao , Du Jiaxuan , Guo Jia
Published: July 2024

This paper introduces a novel meta-heuristic algorithm named Rhinopithecus Swarm Optimization (RSO) to address optimization problems, particularly those involving high dimensions. The proposed algorithm is inspired by the social behaviors of different groups within the rhinopithecus swarm. RSO categorizes the swarm into mature, adolescent, and infancy individuals. Due to this division of labor, each category of individuals employs unique search methods, including vertical migration, concerted search, and mimicry. To evaluate the effectiveness of RSO, we conducted experiments using the CEC2017 test set and three constrained engineering problems. Each function in the test set was independently executed 36 times. Additionally, we used the Wilcoxon signed-rank test and the Friedman test to analyze the performance of RSO compared to eight well-known optimization algorithms: Dung Beetle Optimizer (DBO), Beluga Whale Optimization (BWO), Salp Swarm Algorithm (SSA), African Vultures Optimization Algorithm (AVOA), Whale Optimization Algorithm (WOA), Atomic Retrospective Learning Bare Bone Particle Swarm Optimization (ARBBPSO), Artificial Gorilla Troops Optimizer (GTO), and Harris Hawks Optimization (HHO). The results indicate that RSO exhibited outstanding performance on the CEC2017 test set for both 30 and 100 dimension. Moreover, RSO ranked first in both dimensions, surpassing the mean rank of the second-ranked algorithms by 7.69% and 42.85%, respectively. Across the three classical engineering design problems, RSO consistently achieves the best results. Overall, it can be concluded that RSO is particularly effective for solving high-dimensional optimization problems.
Suppression of host gene expression is associated with latent TB infection: a possible diagnostic biomarker
Authors: Nakiboneka Ritah , Margaritella Nicolò , Nyirenda Tonney , Chaima David , Walbaum Natasha , Musisi Emmanuel , Tionge Sikwese , Msosa Takondwa , Nliwasa Marriott , Msefula Chisomo L. , Sloan Derek , Sabiiti Wilber
Published: July 2024

The World Health Organization End TB strategy aims for a 90% reduction of tuberculosis (TB) incidence by 2035. Systematic testing and treatment of latent TB infection (LTBI) among contacts of active TB patients is recommended as one of the ways to curtail TB incidence. However, there is a shortage of tools to accurately diagnose LTBI. We assessed the appropriateness of whole blood host transcriptomic markers (TM) to diagnose LTBI among household contacts of bacteriologically confirmed index cases compared to HIV negative healthy controls (HC). QuantiFERON-TB Gold Plus Interferon gamma release assay (IGRA) and reverse-transcriptase quantitative PCR were used to determine LTBI and quantify TM expression respectively. Association between TM expression and LTBI was evaluated by logistic regression modelling. A total of 100 participants, 49 TB exposed (TBEx) household contacts and 51 HC, were enrolled. Twenty-five (51%) TBEx individuals tested positive by IGRA, and were denoted as LTBI individuals, and 37 (72.5%) HC were IGRA-negative. Expression of 11 evaluated TM was significantly suppressed among LTBI compared to HC. Out of the 11 TM, ZNF296 and KLF2 expression were strongly associated with LTBI and successfully differentiated LTBI from HC. Paradoxically, 21 (49%) TBEx participants who tested IGRA negative exhibited the same pattern of suppressed TM expression as IGRA positive (LTBI-confirmed individuals). Results suggest that suppression of gene expression underlies LTBI and may be a more sensitive diagnostic biomarker than standard-of-care IGRA.
Impact of multidrug resistance on outcomes in hematologic cancer patients with bacterial bloodstream infections
Authors: Park Ki-Ho , Jung Ye Ji , Lee Hyun Jung , Kim Hong Jun , Maeng Chi Hoon , Baek Sun Kyung , Han Jae Joon , Jeon Woojae , Kim Dong Youn , Lee Yu-Mi , Lee Mi Suk
Published: July 2024

Despite the improved outcomes in patients with hematological malignancies, infections caused by multidrug-resistant organisms (MDROs) pose a new threat to these patients. We retrospectively reviewed the patients with hematological cancer and bacterial bloodstream infections (BSIs) at a tertiary hospital between 2003 and 2022 to assess the impact of MDROs on outcomes. Among 328 BSIs, 81 (24.7%) were caused by MDROs. MDRO rates increased from 10.3% (2003–2007) to 39.7% (2018–2022) (P < 0.001). The 30-day mortality rate was 25.0%, which was significantly higher in MDRO-infected patients than in non-MDRO-infected patients (48.1 vs. 17.4%; P < 0.001). The observed trend was more pronounced in patients with newly diagnosed diseases and relapsed/refractory disease but less prominent in patients in complete remission. Among MDROs, carbapenem-resistant Gram-negative bacteria exhibited the highest mortality, followed by vancomycin-resistant enterococci, methicillin-resistant Staphylococcus aureus, and extended-spectrum β-lactamase-producing Enterobacteriaceae. Multivariate analysis identified independent risk factors for 30-day mortality as age ≥ 65 years, newly diagnosed disease, relapsed/refractory disease, MDROs, polymicrobial infection, CRP ≥ 20 mg/L, and inappropriate initial antibiotic therapy. In conclusion, MDROs contribute to adverse outcomes in patients with hematological cancer and bacterial BSIs, with effects varying based on the underlying disease status and causative pathogens. Appropriate initial antibiotic therapy may improve patient outcomes.
Hydraulic system fault diagnosis decoupling method based on 2D time-series modeling and self-attention fusion
Authors: Wang Haicheng , Zhou Juan , Chen Hu , Xu Bo , Shen Zhengxiang
Published: July 2024

Hydraulic systems play a pivotal and extensive role in mechanics and energy. However, the performance of intelligent fault diagnosis models for multiple components is often hindered by the complexity, variability, strong hermeticity, intricate structures, and fault concealment in real-world conditions. This study proposes a new approach for hydraulic fault diagnosis that leverages 2D temporal modeling and attention mechanisms for decoupling compound faults and extracting features from multisample rate sensor data. Initially, to address the issue of oversampling in some high-frequency sensors within the dataset, variable frequency data sampling is employed during the data preprocessing stage to resample redundant data. Subsequently, two-dimensional convolution simultaneously captures both the instantaneous and long-term features of the sensor signals for the coupling signals of hydraulic system sensors. Lastly, to address the challenge of feature fusion with multisample rate sensor data, where direct merging of features through maximum or average pooling might dilute crucial information, a feature fusion and decoupling method based on a probabilistic sparse self-attention mechanism is designed, avoiding the issue of long-tail distribution in multisample rate sensor data. Experimental validation showed that the proposed model can effectively utilize samples to achieve accurate fault decoupling and classification for different components, achieving a diagnostic accuracy exceeding 97% and demonstrating robust performance in hydraulic system fault diagnosis under noise conditions.
Identification and validation of a prognostic model based on four genes related to satellite nodules in hepatocellular carcinoma
Authors: Liu Feng , Yan Tinghua , Cui Dan , Jiang Jinhua
Published: July 2024

Satellite nodules is a key clinical characteristic which has prognostic value of hepatocellular carcinoma (HCC). Currently, there is no gene-level predictive model for Satellite nodules in liver cancer. For the 377 HCC cases collected from the dataset of Cancer Genome Atlas (TCGA), their original pathological data were analyzed to extract information regarding satellite nodules status as well as other relevant pathological data. Then, this study employed statistical modeling for prognostic model establishment in TCGA, and validation in International Cancer Genome Consortium (ICGC) cohorts and GSE76427. Through rigorous statistical analyses, 253 differential satellite nodules-related genes (SNRGs) were identified, and four key genes related to satellite nodules and prognosis were selected to construct a prognostic model. The high-risk group predicted by our model exhibited an unfavorable overall survival (OS) outlook and demonstrated an association with adverse worse clinical characteristics such as larger tumor size, higher alpha-fetoprotein, microvascular invasion and advanced stage. Moreover, the validation of the model's prognostic value in the ICGC and GSE76427 cohorts mirrored that of the TCGA cohort. Besides, the high-risk group also showed higher levels of resting Dendritic cells, M0 macrophages infiltration, alongside decreased levels of CD8+ T cells and γδT cells infiltration. The prognostic model based on SNRGs can reliability predict the OS of HCC and is likely to have predictive value of immunotherapy for HCC.
Performance analysis of linearization schemes for modelling multi-phase flow in porous media
Authors: Abd Abdul Salam , Asif Ali , Abushaikha Ahmad
Published: July 2024

Reservoir simulation is crucial for understanding the flow response in underground reservoirs, and it significantly helps reduce uncertainties in geological characterization and optimize methodologies for field development strategies. However, providing efficient and accurate solutions for the strong heterogeneity remains challenging, as most of the discretization methods cannot handle this complexity. In this work, we perform a comprehensive assessment of various numerical linearization techniques employed in reservoir simulation, particularly focusing on the performance of the nonlinear solver for problem dealing with fluid flow in porous media. The primary linearization methods examined are finite difference central (FDC), finite forward difference (FDF), and operator-based linearization (OBL). These methods are rigorously analyzed and compared in terms of their accuracy, computational efficiency, and adaptability to changing reservoir conditions. The results demonstrate that each method has distinct strengths and limitations. The FDC method is more accurate particularly in complex simulations where strong heterogeneity are introduced but is generally slower in convergence. The OBL on the other hand, is more efficient and converges quickly, which makes it suitable for scenarios with limited computational resources and simple physics, while the FDF method provides a balanced combination of precision and computational speed, contingent upon careful step size management of the derivative estimations. This paper aims to guide the selection of appropriate linearization techniques for enhancing nonlinear solvers’ accuracy and efficiency in reservoir simulation .
Changes in the outer nuclear layer and choroidal vascularity during the manifest and quiescent phases of acute central serous chorioretinopathy
Authors: Lim Gyeongsoo , Kim Kyung Tae , Kim Dong Yoon , Chae Ju Byung , Seo Eoi Jong
Published: July 2024

To investigate alteration of outer nuclear layer (ONL) and choroidal vascularity index (CVI) in different status of central serous chorioretinopathy (CSC). A retrospective review of 65 CSC eyes with subretinal fluid (manifest CSC) and 40 control eyes was conducted in a single tertiary university hospital. Differences in best-corrected visual acuity (BCVA), ONL, and CVI were compared. CVI was assessed both in the entire choroid (CVI-EC) and around the 1500 μm leakage area (CVI-1500). Measurements were repeated after the subretinal fluid resorption (quiescent CSC), and compared. CSC eyes showed worse BCVA, thinner ONL and greater CVI than controls. Quiescent CSC showed a recovery of ONL compared to the manifest CSC, along with the BCVA improvement. The resolution of the CSC revealed a decrease across all three choroidal areas (total, stromal and luminal), with a more pronounced reduction in the stromal than in the luminal choroidal area, leading to an increase in the CVI. This phenomenon was shown in both CVI-EC and CVI-1500. Conclusively, ONL thickness can be used as a quantitative biomarker for photoreceptor function in CSC. Increased CVI may reflect a disease activity. The stromal choroidal area is particularly sensitive in illustrating leakage from the choroidal vasculature.
Genomic sequencing reveals convergent adaptation during experimental evolution in two budding yeast species
Authors: Wang Pu , Driscoll William W. , Travisano Michael
Published: July 2024

Convergent evolution is central in the origins of multicellularity. Identifying the basis for convergent multicellular evolution is challenging because of the diverse evolutionary origins and environments involved. Haploid Kluyveromyces lactis populations evolve multicellularity during selection for increased settling in liquid media. Strong genomic and phenotypic convergence is observed between K. lactis and previously selected S. cerevisiae populations under similar selection, despite their >100-million-year divergence. We find K. lactis multicellularity is conferred by mutations in genes ACE2 or AIM44, with ACE2 being predominant. They are a subset of the six genes involved in the S. cerevisiae multicellularity. Both ACE2 and AIM44 regulate cell division, indicating that the genetic convergence is likely due to conserved cellular replication mechanisms. Complex population dynamics involving multiple ACE2/AIM44 genotypes are found in most K. lactis lineages. The results show common ancestry and natural selection shape convergence while chance and contingency determine the degree of divergence.
Tracking the hologenome dynamics in aquatic invertebrates by the holo-2bRAD approach
Authors: Ma Cen , Xu Chang , Zhang Tianqi , Mu Qianqian , Lv Jia , Xing Qiang , Yang Zhihui , Xu Zhenyuan , Guan Yalin , Chen Chengqin , Ni Kuo , Dai Xiaoting , Ding Wei , Hu Jingjie , Bao Zhenmin , Wang Shi , Liu Pingping
Published: July 2024

The “hologenome” concept is an increasingly popular way of thinking about microbiome-host for marine organisms. However, it is challenging to track hologenome dynamics because of the large amount of material, with tracking itself usually resulting in damage or death of the research object. Here we show the simple and efficient holo-2bRAD approach for the tracking of hologenome dynamics in marine invertebrates (i.e., scallop and shrimp) from one holo-2bRAD library. The stable performance of our approach was shown with high genotyping accuracy of 99.91% and a high correlation of r > 0.99 for the species-level profiling of microorganisms. To explore the host-microbe association underlying mass mortality events of bivalve larvae, core microbial species changed with the stages were found, and two potentially associated host SNPs were identified. Overall, our research provides a powerful tool with various advantages (e.g., cost-effective, simple, and applicable for challenging samples) in genetic, ecological, and evolutionary studies.
Role of the V2R–βarrestin–Gβγ complex in promoting G protein translocation to endosomes
Authors: Sokrat Badr , Nguyen Anthony H. , Thomsen Alex R. B. , Huang Li-Yin , Kobayashi Hiroyuki , Kahsai Alem W. , Kim Jihee , Ho Bing X. , Ma Symon , Little John , Ehrhart Catherine , Pyne Ian , Hammond Emmery , Bouvier Michel
Published: July 2024

Classically, G protein-coupled receptors (GPCRs) promote signaling at the plasma membrane through activation of heterotrimeric Gαβγ proteins, followed by the recruitment of GPCR kinases and βarrestin (βarr) to initiate receptor desensitization and internalization. However, studies demonstrated that some GPCRs continue to signal from internalized compartments, with distinct cellular responses. Both βarr and Gβγ contribute to such non-canonical endosomal G protein signaling, but their specific roles and contributions remain poorly understood. Here, we demonstrate that the vasopressin V2 receptor (V2R)–βarr complex scaffolds Gβγ at the plasma membrane through a direct interaction with βarr, enabling its transport to endosomes. Gβγ subsequently potentiates Gαs endosomal translocation, presumably to regenerate an endosomal pool of heterotrimeric Gs. This work shines light on the mechanism underlying G protein subunits translocation from the plasma membrane to the endosomes and provides a basis for understanding the role of βarr in mediating sustained G protein signaling.
Magnesium hydroxide addition reduces aqueous carbon dioxide in wastewater discharged to the ocean
Authors: Kitidis Vassilis , Rackley Stephen. A. , Burt William. J. , Rau Greg. H. , Fawcett Samuel , Taylor Matthew. , Tarran Glen , Woodward E. Malcolm S. , Harris Carolyn , Fileman Timothy
Published: July 2024

Ocean alkalinity enhancement (OAE) reduces the concentration of dissolved carbon dioxide (CO2) in seawater, leading to atmospheric carbon dioxide removal (CDR). Here we report laboratory experiments and a field-trial of alkalinity enhancement through addition of magnesium hydroxide to wastewater and its subsequent discharge to the coastal ocean. In wastewater, a 10% increase of average alkalinity (+0.56 mmol/kg) led to a 74% reduction in aqueous CO2 (−0.41 mmol/kg) and pH increase of 0.4 units to 7.78 (efficiency 0.73 molCO2/mol alkalinity). The alkalinization signal was limited to within a few metres of the ocean discharge, evident as 27.2 μatm reduction in CO2 partial pressure and 0.017 unit pH increase, and was consistent with rapid dilution of the alkali-treated wastewater. While this proof of concept field trial did not achieve CDR due to its small scale, it demonstrated the potential of magnesium hydroxide addition to wastewater as a CDR solution.
Unified metagenomic method for rapid detection of microorganisms in clinical samples
Authors: Alcolea-Medina Adela , Alder Christopher , Snell Luke B. , Charalampous Themoula , Aydin Alp , Nebbia Gaia , Williams Tom , Goldenberg Simon , Douthwaite Sam , Batra Rahul , Cliff Penelope R. , Mischo Hannah , Neil Stuart , Wilks Mark , Edgeworth Jonathan D.
Published: July 2024

Background

Clinical metagenomics involves the genomic sequencing of all microorganisms in clinical samples ideally after depletion of human DNA to increase sensitivity and reduce turnaround times. Current human DNA depletion methods preferentially preserve either DNA or RNA containing microbes, but not both simultaneously. Here we describe and present data using a practical and rapid mechanical host-depletion method allowing simultaneous detection of RNA and DNA microorganisms linked with nanopore sequencing.

Methods

The human cells from respiratory samples are lysed mechanically using 1.4 mm zirconium-silicate spheres and the human DNA is depleted using a nonspecific endonuclease. The RNA is converted to dsDNA to allow the simultaneous sequencing of DNA and RNA.

Results

The method decreases human DNA concentration by a median of eight Ct values while detecting a broad range of RNA & DNA viruses, bacteria, including atypical pathogens (Legionella, Chlamydia, Mycoplasma) and fungi (Candida, Pneumocystis, Aspergillus). The first automated reports are generated after 30 min sequencing from a 7 h end-to-end workflow. Sensitivity and specificity for bacterial detection are 90% and 100%, respectively, and viral detection are 92% and 100% after 2 h of sequencing. Prospective validation on 33 consecutive lower respiratory tract samples from ventilated patients with suspected pneumonia shows 60% concordance with routine testing, detection of additional pathogens in 21% of samples and pathogen genomic assembly achieve for 42% of viruses and 33% of bacteria.

Conclusions

Although further workflow refinement and validation on samples containing a broader range of pathogens is required, it holds promise as a clinically deployable workflow suitable for evaluation in routine microbiology laboratories.
Epidemic modelling suggests that in specific circumstances masks may become more effective when fewer contacts wear them
Authors: Klimek Peter , Ledebur Katharina , Thurner Stefan
Published: July 2024

Background

The effectiveness of non-pharmaceutical interventions to control the spread of SARS-CoV-2 depends on many contextual factors, including adherence. Conventional wisdom holds that the effectiveness of protective behaviours, such as wearing masks, increases with the number of people who adopt them. Here we show in a simulation study that this is not always true.

Methods

We use a parsimonious network model based on the well-established empirical facts that adherence to such interventions wanes over time and that individuals tend to align their adoption strategies with their close social ties (homophily).

Results

When these assumptions are combined, a broad dynamic regime emerges in which the individual-level reduction in infection risk for those adopting protective behaviour increases as adherence to protective behaviour decreases. For instance, at 10 % coverage, we find that adopters face nearly a 30 % lower infection risk than at 60 % coverage. Based on surgical mask effectiveness estimates, the relative risk reduction for masked individuals ranges from 5 % to 15 %, or a factor of three. This small coverage effect occurs when the outbreak is over before the pathogen is able to invade small but closely knit groups of individuals who protect themselves.

Conclusions

Our results confirm that lower coverage reduces protection at the population level while contradicting the common belief that masking becomes ineffective at the individual level as more people drop their masks.
Facilitating charge transfer and band alignment in perovskite solar cells via interfacial regulation with a Nb2CTx MXene oxidized derivative
Authors: Yang Lin , Liu Ziyan , Zheng Tianfang , Li Peng , Ma Jiangang , Zhang Xintong , Wang Xiao-Feng , Liu Yichun
Published: July 2024

A Nb2CTx MXene oxidized derivative was explored for interfacial engineering in perovskite solar cells. Better energy level alignment and facilitated charge transfer were obtained, thus leading to enhanced efficiency together with long-term stability.
MOFs-derived Zn-doped ceria/rGO nanocomposites as photoanode for solar-driven water splitting
Authors: Koyale Pramod A. , Patil Amruta D. , Dongale Tukaram D. , Thorat Parth S. , Sutar Santosh S. , Parale Vinayak G. , Park Hyung-Ho , Panda Dillip K. , Delekar Sagar D.
Published: July 2024

The present investigation focuses on designing MOFs-derived Zn-doped ceria/rGO-based photoanodes for photoelectrochemical (PEC) water splitting.
Exciton dynamics of the efficiency roll-off of exciplex-based OLEDs and low efficiency roll-off phosphorescence OLEDs based on an exciplex as the host
Authors: Liu Wei , Pan Jianhui , Sun Qian , Dai Yanfeng , Yang Dezhi , Qiao Xianfeng , Ma Dongge
Published: July 2024

A kinetic model including all the possible excited state pathways associated with the TADF processes in an exciplex.
Study of construction of Golomb Costas arrays with ideal autocorrelation properties based on extension field
Authors: Yao Jianguo , Liu Ziwei , Wang Xiaoming
Published: July 2024

This paper proposes a specific algebraic structure and demonstrates its nature as an extension field, enabling the construction of Golomb Costas (GC) arrays. It provides detailed instructions and examples for constructing GC arrays using this extension field, along with a corresponding flowchart. Additionally, the paper conducts a thorough analysis, incorporating calculations and comparisons, to evaluate the autocorrelation of a GC array derived from the extension field compared to that of a diagonal frequency hopping array. The analysis reveals the superior autocorrelation properties of GC arrays based on the extension field. Furthermore, the paper establishes a mathematical model for the signal coded by the frequency hopping array and subsequently simulates and compares the ambiguity function of the signal coded by a GC array with that of a signal coded by a diagonal frequency hopping array. This comparison underscores the thumbtack ambiguity function of frequency hopping signal coded by a GC array. Moreover, the paper thoroughly investigates the relationship between the correlation function of GC arrays and the roots of an algebraic equation in a finite field, and strictly proves the ideal autocorrelation properties of Golomb Costas arrays.
A hybrid energy storage array group control strategy for wind power smoothing
Authors: Tong Tong , Wei Le , Chen Yuanye , Fang Fang
Published: July 2024

With the increase of wind power generation, the safety and economy of power system operations are greatly influenced by the intermittency and fluctuation of wind power. To take the advantage of the complementary characteristics between different energy storage devices, a Hybrid Energy Storage System (HESS) consisting of Battery Energy Storage System (BESS) and Flywheel Energy Storage System (FESS) can alleviate the uncertainty of wind power. This article has proposed a coordinated control strategy through group consensus algorithm based on Model Predictive Control (MPC) for Hybrid Energy Storage Array (HESA) to smooth wind power fluctuations. To allocate power commands to the FESS and BESS, the fluctuation of wind power output is extracted with different frequency domain characteristics as instructions by Empirical Mode Decomposition (EMD) technology. Moreover, a group consensus algorithm based on MPC is proposed to complete the adaptive power allocation of energy storage units. Eventually, the actual wind farm data is used for the simulation to verify the effect of control strategy proposed in this paper. It can be seen that the developed group consensus algorithm based on MPC can cope with different frequency power commands, avoid overcharging and discharging of energy storage media, and smooth wind power effectively.
A hypothesis test for the domain of attraction of a random variable
Authors: Olivero Héctor , Talay Denis
Published: July 2024

In this work, we address the problem of detecting whether a sampled probability distribution of a random variable V has infinite first moment. This issue is notably important when the sample results from complex numerical simulation methods. For example, such a situation occurs when one simulates stochastic particle systems with complex and singular McKean–Vlasov interaction kernels. As stated, the detection problem is ill-posed. We thus propose and analyze an asymptotic hypothesis test for independent copies of a given random variable which is supposed to belong to an unknown domain of attraction of a stable law. The null hypothesis H0 is: ‘√V is in the domain of attraction of the Normal law’ and the alternative hypothesis is H1: ‘X is in the domain of attraction of a stable law with index smaller than 2’. Our key observation is that X cannot have a finite second moment when H0 is rejected (and therefore H1 is accepted). Surprisingly, we find it useful to derive our test from the statistics of random processes. More precisely, our hypothesis test is based on a statistic which is inspired by methodologies to determine whether a semimartingale has jumps from the observation of one single path at discrete times. We justify our test by proving asymptotic properties of discrete time functionals of Brownian bridges.
Stereoselective Synthesis of Polyketide Segments of Nemamide A and Euglenatides D–E
Authors: Goswami Rajib Kumar , Sharma Himangshu , Paul Sujan
Published: July 2024

A convergent strategy for the stereoselective synthesis of polyketide segments of hybrid natural products nemamide A and euglenatides D–E has been developed for the first time. The salient features of this gram-scale synthesis include Trost–Rychnovsky alkyne rearrangement, HWE olefination, regioselective epoxide ring opening, Prins–Ritter cyclization, and subsequent reductive cleavage of the substituted THP ring. The optimized route is modular and could be tunable to access the other polyketide counterparts of these families of metabolites.
Cell freezing and the biology of inexorability: on cryoprotectants and chemical time
Authors: Landecker Hannah
Published: July 2024

What can’t freezing hold still? This article surveys the history of substances used to protect cells and organisms from freezing damage, known as cryoprotectants. Dimethyl sulfoxide (DMSO) has since 1959 been the most widely used of these agents in cryopreservation. Here, its evolution from pulp and paper waste byproduct to wonder drug to all-but-invisible routine element of freezing protocols is used to trace the direct arc from protection to toxicity in theories of how and why cryoprotectants work, from the 1960s to today. The power of these agents to simultaneously protect and degrade is shown to reside in manipulation of chemical time via hydrogen bonding and electron exchange, thereby reframing freezing as a highly active and transformational process. Countering long-held assumptions about cryopreservation as an operation of stasis after which the thawed entity is the same as it was before, this article details recent demonstrations of effects of cryoprotectant exposure that are nonlethal but nonetheless profoundly impactful within scientific and therapeutic practices that depend on freezing infrastructures. Understanding the operationalization of chemical time in the case of cryoprotectants is broadly relevant to other modern technologies dedicated to shifting how material things exist and persist in human historical time.
Differentiated secularism: discourse shaping of immigrants from different religious backgrounds in the French media
Authors: Song Wenlong , Pang Bo , Wang Zihan , Xu Yilang , Liu Zetong , Tan Murong
Published: July 2024

This paper examines the mechanisms of differentiated discursive disciplining for immigrants of different religious backgrounds in the French media. Based on a sample of 120 articles on immigration in the French mainstream media, textual analyses and comparisons were conducted. Results show that influenced by religious factors, the French media use secularism as a tool to portray completely different images of immigrants through different discursive logics. Muslim immigrants present a paradoxically biased negative image in the French media discourse as a collection of invaders and the disciplined. In contrast, the media image of Ukrainian immigrants of Orthodox Christian background is positive on the whole, with a certain degree of deliberateness in the details of its construction. The difference in the symbolic characterization between Catholicism and Islam enables the exclusionary media discourse against Muslim immigrants. The paper also discusses French media discourse flaws and policy dilemmas. The logic of French media discourse is paradoxical in its inability to maintain an intact secularist identification and to effectively influence political issues to the detriment of promoting immigrant integration.
Comparison of meat quality, muscle-fibre characteristics and the Sirt1/AMPK/PGC-1α pathway in different breeds of pigs
Authors: Gao Yi , Li Zhaohua , Zhang Qi , Hao Tong , Liu Hongliang , Liu Qingyu , Liu Lizhai , Zhang Zhibin , Yu Yongsheng , Li Na
Published: July 2024

Context Muscle fibre characteristics are important internal factors that can directly affect pork quality. Especially muscle-fibre types can interconvert with the influence of certain factors. Aims The purpose of this experiment was to study the differences in meat quality among Songliao black pigs, Jilin Hua pigs and Dongliao black pigs, and the molecular mechanism of the differences. Methods First, the conventional meat-quality traits of each breed were determined. Second, the muscle-fibre characteristics of different muscles were analysed by the haematoxylin–eosin staining and immunohistochemistry. Next, the activity of several key oxidative/glycolytic enzymes was detected with kits. Finally, quantitative polymerase chain reaction was used to analyse the expression abundance of myosin heavy-chain (MyHC) genes and key genes related to muscle fibre-type transformation. Key results The results of meat-quality measurement showed that Songliao black pigs were superior to Jilin Hua pigs and Dongliao black pigs in water-holding capacity, tenderness and intra-muscular fat; and Jilin Hua pigs were superior to Dongliao black pigs in water-holding capacity. The diameter and area of muscle fibres were the smallest, the density was the largest, the proportion of oxidative muscle fibres, oxidative enzyme activity and expression abundance of oxidative genes were the highest in Songliao black pigs, followed by Jilin Hua pigs and Dongliao black pigs. The proportions of oxidative muscle fibres ranged from 10.37% to 33.6% in Songliao black pigs, from 6.96% to 26.42% in Jilin Hua pigs, and from 5.86% to 17.42% in Dongliao black pigs. The psoas major exhibited the smallest muscle-fibre diameter, the highest density, followed by triceps brachii, biceps femoris and longissimus thoracis. The oxidative muscle fibre proportions of the psoas major and triceps brachii were significantly greater than those of the biceps femoris and longissimus thoracis. The expression abundances of AMP-activated protein kinase (AMPK), silencing information regulator 1 (SIRT1) and peroxisome proliferator-activated receptor γ coactivator 1α (PGC-1α) (Sirt1/AMPK/PGC-1α) pathway and mitochondrial function-related genes were the highest in Songliao black pigs, followed by Jilin Hua pigs and Dongliao black pigs. Conclusions The results showed that Songliao black pigs had the best meat quality, followed by Jilin Hua pigs and Dongliao black pigs. The meat quality of psoas major and triceps brachii was significantly greater than that of biceps femoris and longissimus thoracis. This experiment suggests that transformation of oxidative muscle fibres can be promoted through the Sirt1/AMPK/PGC-1α pathway. Implications By analysing the meat-quality traits and the molecular mechanism of meat-quality differences, it can provide data reference and direction for further meat-quality improvement of three breed pigs.
Elusive referentiality and allusive reference in Indonesian conversation
Authors: Ewing Michael C.
Published: July 2024

This chapter examines referential practices in a corpus of colloquial Indonesian conversation and attempts
to address the question: “Does referentiality matter to speakers?” I take referentiality to be a multi-dimensional phenomenon
involving (at least) whether referents are construed as general or particular and whether they are tracked through discourse.
Through close examination of excerpts from conversational interaction, I show that there is often a blurring between the
general and the particular, that referents are often indeterminate, and that referentiality as a discrete and classifiable
linguistic property often does not seem to be relevant to participants in ongoing interaction. In this sense, referentiality
does not always appear to matter to speakers. At the same time, referential practices do appear to be exploitable by speakers
as resources for social action. Specifically, I show that a shift in referential practices regularly coincides with a shift in
alignment, understood in terms of footing. These may involve shifts between generalising and exemplifying or moving from
narratorial to quoted speech. To the extent that shifts in referentiality coincide with shifts in footing, then it can be said
that referentiality does matter to speakers.