bluuebunny/crossref_metadata_2025 huggingface dataset:
Metagenome-Assembled Genomes of Pig Fecal Samples in Nine European Countries: Insights into Antibiotic Resistance Genes and Viruses
Authors: Yang Boxuan , Yang Jianbo , Chen Routing , Chai Jianmin , Wei Xiaoyuan , Zhao Jiangchao , Zhao Yunxiang , Deng Feilong , Li Ying
Published: November 2024

Gut microbiota plays a crucial role in the health and productivity of pigs. However, the spread of antibiotic resistance genes (ARGs) and viruses within the pig intestinal microbiota poses significant threats to animal and public health. This study utilized 181 pig samples from nine European countries and employed metagenomic assembly methods to investigate the dynamics and distribution of ARGs and viruses within the pig intestinal microbiota, aiming to observing their associations with potential bacterial hosts. We identified 4605 metagenome-assembled genomes (MAGs), corresponding to 19 bacterial phyla, 97 families, 309 genera, and a total of 449 species. Additionally, 44 MAGs were classified as archaea. Analysis of ARGs revealed 276 ARG types across 21 ARG classes, with Glycopeptide being the most abundant ARG class, followed by the class of Multidrug. Treponema D sp016293915 was identified as a primary potential bacterial host for Glycopeptide. Aligning nucleotide sequences with a viral database, we identified 1044 viruses. Among the viral genome families, Peduoviridae and Intestiviridae were the most prevalent, with CAG-914 sp000437895 being the most common potential host species for both. These findings highlight the importance of MAGs in enhancing our understanding of the gut microbiome, revealing microbial diversity, antibiotic resistance, and virus–bacteria interactions. The data analysis for the article was based on the public dataset PRJEB22062 in the European Nucleotide Archive.
Whole-Genome Sequencing of Peribacillus frigoritolerans Strain d21.2 Isolated in the Republic of Dagestan, Russia
Authors: Romanenko Maria N. , Shikov Anton E. , Savina Iuliia A. , Nizhnikov Anton A. , Antonets Kirill S.
Published: November 2024

Pesticide-free agriculture is a fundamental pillar of environmentally friendly agriculture. To this end, there is an active search for new bacterial strains capable of synthesizing secondary metabolites and toxins that protect crops from pathogens and pests. In this study, we isolated a novel strain d21.2 of Peribacillus frigoritolerans from a soil sample collected in the Republic of Dagestan, Russia. Leveraging several bioinformatic approaches on Illumina-based whole-genome assembly, we revealed that the strain harbors certain insecticidal loci (coding for putative homologs of Bmp and Vpa) and also contains multiple BGCs (biosynthetic gene clusters), including paeninodin, koranimine, schizokinen, and fengycin. In total, 21 BGCs were predicted as synthesizing metabolites with bactericidal and/or fungicidal effects. Importantly, by applying a re-scaffolding pipeline, we managed to robustly predict MGEs (mobile genetic elements) associated with BGCs, implying high genetic plasticity. In addition, the d21.2’s genome was free from genes encoding for enteric toxins, implying its safety in use. A comparison with available genomes of the Peribacillus frigoritolerans strain revealed that the strain described here contains more functionally important loci than other members of the species. Therefore, strain d21.2 holds potential for use in agriculture due to the probable manifestation of bactericidal, fungicidal, growth-stimulating, and other useful properties. The assembled genome is available in the NCBI GeneBank under ASM4106054v1.
Effects of Increasing Temperature on Bacterial Community Diversity in Mixed Stands of Artemisia argyi and Solidago canadensis in Eastern China
Authors: Yu Haochen , Ren Guangqian , Huang Zhiyun , Qi Shanshan , Zhao Biying , Fan Xue , Zhu Zhaoqi , Dai Zhicong , Du Daolin
Published: November 2024

Global climate change and invasive plants significantly impact biodiversity and ecosystem functions. This study focuses on the effects of progressive warming on microbial communities within the Solidago canadensis invasion community, simulated through six stages of invasion progression, from minimal to dominant S. canadensis presence alongside native Artemisia argyi, in bulk soils collected from a natural habitat and cultivated under controlled greenhouse conditions. Utilizing high-throughput sequencing and microbial community analysis on 72 samples collected from the S. canadensis invasion community, the shifts in soil microbiota under varying warming scenarios were investigated (+0 °C, +1.15 °C and +1.86 °C). We observed significant shifts in invasion community soil bacteria in response to warming, with Acidobacteria, Actinobacteria, and others showing distinct responses between baseline and warmed conditions, while groups like Chlorobi and Cyanobacteria only differed significantly at higher temperature extremes. The random forests algorithm identified 14 taxa as biomarkers and a model was established to correlate S. canadensis invasion community soil microbiota with progressive warming. Co-occurrence network analysis revealed that moderate warming enhances microbial connectivity and the presence of a super-generalist, ASV 1160. However, further warming disrupts these networks by eliminating key generalists, revealing a potential reduction in network stability and diversity. These findings illuminate the dynamic responses of microbes in S. canadensis invasion community soil to varying temperature regimes, suggesting a model for successional dynamics and offering a deeper comprehension of microbial community shifts amid climatic fluctuations. This study delineates how warming significantly reshapes the soil microbial composition, potentially impacting S. canadensis’s invasion success unfavorably, thereby highlighting the importance of considering microbial dynamics in ecological management.
Delayed Sowing Reduced Verticillium Wilt by Altering Soil Temperature and Humidity to Enhance Beneficial Rhizosphere Bacteria of Sunflower
Authors: Yang Jianfeng , Jia Shuo , Li Tie , Zhang Jian , Zhang Yuanyuan , Hao Jianjun , Zhao Jun
Published: November 2024

Sunflower Verticillium Wilt (SVW) caused by Verticillium dahliae is a significant threat to sunflower production in China. This soilborne disease is difficult to control. It has been observed that delayed sowing reduces the severity of SVW on different varieties and across various locations. Soil was collected from multiple locations with different sowing dates to understand the underlying biological mechanisms driving this phenomenon. The soil bacterial community was characterized through 16S rRNA gene amplicon sequencing performed on the Illumina MiSeq platform, followed by comprehensive bioinformatics analysis. Microsclerotia numbers in soil were detected using both NP-10 selective medium and quantitative polymerase chain reaction (qPCR). By delaying the sowing date, the number of microsclerotia in soil and the biomass of V. dahliae colonized inside sunflower roots were reduced during the early developmental stages (V2–V6) of sunflowers. Amplicon sequencing revealed an increased abundance of bacterial genera, such as Pseudomonas, Azoarcus, and Bacillus in soil samples collected from delayed sowing plots. Five bacterial strains isolated from the delayed sowing plot exhibited strong antagonistic effects against V. dahliae. The result of the pot experiments indicated that supplying two different synthetic communities (SynComs) in the pot did increase the control efficiencies on SVW by 19.08% and 37.82% separately. Additionally, soil temperature and humidity across different sowing dates were also monitored, and a significant correlation between disease severity and environmental factors was observed. In conclusion, delayed sowing appears to decrease microsclerotia levels by recruiting beneficial rhizosphere bacteria, thereby reducing the severity of SVW.
A Comparison of Three Automated Nucleic Acid Extraction Systems for Human Stool Samples
Authors: Kwa Wit Thun , Sim Choon Kiat , Low Adrian , Lee Jonathan Wei Jie
Published: November 2024

Automated nucleic acid extractors are useful instruments for the high-throughput processing of bio-samples and are expected to improve research throughput in addition to decreased inter-sample variability inherent to manual processing. We evaluated three commercial nucleic acid extractors Bioer GenePure Pro (Bioer Technology, Hangzhou, China), Maxwell RSC 16 (Promega Corporation, Madison, WI, USA), and KingFisher Apex (ThermoFisher Scientific, Waltham, MA, USA) based on their DNA yield, DNA purity, and 16S rRNA gene amplicon results using both human fecal samples and a mock community (ZymoBIOMICS Microbial Community Standard (Zymo Research Corp., Irvine, CA, USA)). Bead-beating provided incremental yield to effectively lyse and extract DNA from stool samples compared to lysis buffer alone. Differential abundance analysis and comparison of prevalent bacterial species revealed a greater representation of Gram-positive bacteria in samples subjected to mechanical lysis, regardless of sample type. All three commercial extractors had differences in terms of yield, inter-sample variability, and subsequent sequencing readouts, which we subsequently share in the paper and believe are significant considerations for all researchers undertaking human fecal microbiota research.
Assessing Normandy Soil Microbial Diversity for Antibacterial Activities Using Traditional Culture and iChip Methods
Authors: Perrier Fabien , Morice Juliette , Gueulle Sabrina , Géry Antoine , Riboulet-Bisson Eliette , Garon David , Muller Cécile , Desriac Florie
Published: November 2024

Uncultured microorganisms represent a promising and untapped source of antibacterial compounds, crucial in the fight against the significant threat of antimicrobial resistance (AMR). In this study, both traditional and isolation chip (iChip) cultivation techniques were employed to enhance the recovery of known and unknown microorganisms from soils located in Normandy, France. The isolates obtained were identified using 16S rDNA or ITS regions analysis and MALDI-TOF mass spectrometry and were screened for antibacterial activity. A total of 386 isolates, belonging to 6 microbial phyla and distributed across 65 genera, were recovered using both methods. In total, 11 isolates are potentially new bacterial species, and 34 were associated with 22 species described recently. The iChip method yielded a higher diversity of microorganisms (47 genera) than the traditional method (38 genera) and was particularly effective in enriching Actinomycetota. Antibacterial screening against target bacteria showed that 85 isolates (22%) exhibited antibacterial activity. The Streptomyces, Pseudomonas, and Bacillaceae taxa accounted for most antibacterial-producing bacteria with some presenting promising undescribed characteristics. Other active isolates were affiliated with less-known antibacterial producers such as Arthrobacter, Chryseobacterium, Delftia, Ensifer, Flavobacterium, Rahnella, and Stenotrophomonas, among others. These results highlight the potential of our microbial collection as a source of new antibacterial natural products.
One-Step Multiplex Real-Time Fluorescent Quantitative Reverse Transcription PCR for Simultaneous Detection of Four Waterfowl Viruses
Authors: Wang Chenchen , Liu Huixin , Cheng Junze , Pan Sijia , Yang Wenwen , Wei Xiaofang , Cheng Yue , Xu Ting , Si Hongbin
Published: November 2024

Duck Tembusu virus (DTMUV), duck hepatitis virus (DHV), Muscovy duck reovirus (MDRV), and Muscovy duck parvovirus (MDPV) represent four emergent infectious diseases impacting waterfowl, which can be challenging to differentiate due to overlapping clinical signs. In response to this, we have developed a one-step multiplex real-time fluorescence quantitative reverse transcription PCR (qRT-PCR) assay, capable of simultaneously detecting DTMUV, DHV, MDRV, and MDPV. This method exhibits high specificity, avoiding cross-reactivity with other viruses such as Fowl adenoviruses (FADV), infectious bursal disease virus (IBDV), infectious bronchitis virus (IBV), infectious laryngotracheitis virus (ILTV), Haemophilus paragallinarum (Hpg), duck circovirus (DUCV), goose astrovirus (GoAstV), and mycoplasma gallisepticum (MG). The limit of detection (LOD) established for DTMUV, DHV, MDRV, and MDPV was determined to be 27 copies/μL. In the repeatability test, the intra-assay and inter-assay coefficients of variation (CVs) of the recombinant plasmid standard were less than 2%. Utilizing this method, we analyzed 326 clinical specimens sourced from Guangxi over the period spanning October 2021 through December 2023, yielding promising and precise outcomes. The qRT-PCR method established herein exhibits commendable specificity, sensitivity, and repeatability. Furthermore, it boasts a high clinical detection rate, making it a highly effective tool for diagnosing these pathogenic agents in waterfowl.
Enhancement of Digestive Enzyme Activity in Enterococcus faecalis Using ARTP Mutagenesis
Authors: Yuan Meng , Li Zhengzhong , Zhou Qunlan , Zheng Xiaochuan , Sun Cunxin , Liu Bo , Wang Aimin , Zhu Aimin
Published: November 2024

Enterococcus faecalis is used as a probiotic in animal and human food supplements. Atmospheric and room temperature plasma (ARTP) systems have frequently been used to screen for effective mutant probiotics. In this study, E. faecalis was treated with ARTP, and high-yielding digestive enzyme mutant strains were obtained by measuring the activities of α-amylase, lipase, and neutral protease. A total of 833 mutant strains were obtained after 40–60 s of ARTP treatment, and after screening for digestive enzyme activity, EF-448, EF-798, and EF-804 were obtained. The three strains demonstrated an 180% increase in α-amylase activity, a 30% increase in lipase activity, and a more than 40% increase in neutral protease activity. Furthermore, the enzyme activities remained stable after nine generations. In addition, the strains exhibited high auto-aggregation capacity (over 91%) and high cell hydrophobicity (over 93%). After exposure to simulated intestinal fluid for 6 h, the survival rates of EF-448 and EF-798 were 85.71% and 82.32%, respectively. Moreover, the three mutant strains retained antioxidant capacity and DPPH free radical scavenging ability, and there was no hemolysis. A safety experiment has shown that there is no mortality of Macrobrachium rosenbergii within 14 days after receiving injections of mutant strains at different concentrations. In conclusion, this study obtained three mutant strains with high production of digestive enzymes and stable inheritance through ARTP mutagenesis of E. faecalis, providing an efficient microbial resource.
Cryptosporidium Species Infections Detected from Fecal Samples of Animal and Human Hosts in South Africa: Systematic Review and Meta-Analysis
Authors: Tawana Mpho , Onyiche ThankGod E. , Ramatla Tsepo , Nkhebenyane Sebolelo Jane , Grab Dennis J. , Thekisoe Oriel
Published: November 2024

This study presents a systematic review and meta-analysis approach of Cryptosporidium species prevalence studies in animal and human hosts published between 1980 and 2020 in South Africa. Extensive searches were conducted on three electronic databases including PubMed, ScienceDirect and Google Scholar. The findings indicated an overall pooled prevalence estimate (PPE) of Cryptosporidium spp. infections in animals and humans at 21.5% and 18.1%, respectively. The PCR–RFLP appeared to be the most sensitive diagnostic method with a PPE of 77.8% for the detection of Cryptosporidium spp. infections followed by ELISA (66.7%); LAMP (45.4%); PCR (25.3%); qPCR (20.7%); microscopy (10.1%); IFAT (8.4%); and RDT (7.9%). In animal hosts, C. parvum had the highest PPE of 3.7%, followed by C. andersoni (1.5%), C. ubiquitum (1.4%) and C. bovis (1.0%), while in humans, C. parvum also had the highest PPE of 18.3% followed by C. meleagridis at 0.4%. The data generated in this study indicated that Cryptosporidium spp. infections were highly prevalent in both animals and humans in South Africa, especially in the KwaZulu-Natal and North West provinces. However, we further observed that there was a lack of prevalence studies for both animals and humans in some of the provinces. This study highlights the necessity for a “One Health” strategic approach promoting public hygiene, animal husbandry and regular screening for Cryptosporidium spp. infections in both animals and humans.
Purification of Vein Quartz Using a New Fluorine-Free Flotation: A Case from Southern Anhui Province, China
Authors: Du Shuhua , Pan Banglong , Xia Liang , Zhu Guoqing , Wu Lei , Yu Changjun , Li Fan , Diao Zhuo
Published: November 2024

High-purity quartz is an emerging strategic material that has been extensively used in the semiconductor and photovoltaic fields. Taking vein quartz from southern Anhui Province as an example, raw materials were processed by ultrasonic scrubbing-desliming, magnetic separation, flotation, high-temperature calcination, water quenching, hot-press acid leaching, and deionized water cleaning to prepare high-purity quartz sand. At the same time, the microscopic structure, inclusions, phase, mineral morphology, water content in inclusions, and trace impurities of the gangue samples were analyzed using an optical microscope, a laser Raman spectrometer, an X-ray diffractometer, a scanning electron microscope, an infrared spectrum analyzer, and an inductively coupled plasma mass spectrometer. The results showed that feldspar and muscovite were the main impurities. After purification, the total amount of 13 impurities in quartz sand was reduced to 28.66 μg/g, and the contents of the main impurity elements Al, Na, and Fe were 12.81 μg/g, 12.80 μg/g, and 0.52 μg/g, respectively. The mass fraction of SiO2 increased from 99.06% to 99.9972%. This shows that flotation, high-temperature calcination, and hot-pressing acid leaching are the keys to obtaining high-purity quartz sand. Fluoride-free flotation with the new collector XK02 can effectively realize the deep separation of quartz and mineral impurities. High-temperature calcination can form more cracks on the surface of quartz sand particles, and the mixed acid enters the open crack channels to effectively remove impurities from the inclusions. This method provides technical support for the preparation of high-purity quartz sand with high value and for the efficient utilization of quartz ore.
Natural Illite Liquid Mineral Extract: A Clinical Study of an Emulsion to Improve Skin Barrier Function
Authors: Park Jieun , Kim Mingi , Kim Yeonjun , Lee Joodong , Kim Bora
Published: November 2024

In this study, we evaluated the skin barrier improvement effect of a natural liquid mineral extract of mica clay, commonly used in cosmetics. The mica particles have an average size of approximately 4.77 μm, with a range around 10 μm. The specific surface area is about 8.8 m2/g, the average pore volume is 0.02 cm3/g, and the pore size is 10.82 nm. The extraction process involved mixing the mineral materials with distilled water for 2 days. The final extraction solution contained approximately 6 mg/L of potassium, as determined using inductively coupled plasma optical emission spectrometry (ICP-OES). A cosmetic emulsion containing the natural illite liquid mineral extract was assessed for stability in pH, viscosity, color, and odor under various conditions, including 4 °C, 25 °C, 45 °C, temperature cycling, and daylight, over 3 months. A placebo-controlled clinical trial was conducted to evaluate the skin barrier improvement and soothing effects on skin damaged by sodium lauryl sulfate (SLS) exposure or tape stripping. The test product demonstrated a statistically significant improvement in transepidermal water loss (TEWL) and skin redness compared to the control product. Therefore, the natural illite liquid mineral extract appears to enhance skin barrier function and soothe damaged skin, suggesting its potential therapeutic benefits.
Advanced Trends in Shale Mechanical Inhibitors for Enhanced Wellbore Stability in Water-Based Drilling Fluids
Authors: Ai Erxin , Li Qi , Liu Zhikun , Zhang Bo , Wang Liupeng , Ma Chengyun
Published: November 2024

Wellbore instability, particularly in shale formations, presents a great challenge to modern drilling operations. Although conventional chemical inhibitors are frequently employed in water-based drilling fluids, they may not always function in highly reactive or naturally fractured shale formations. In recent years, mechanical inhibitors have attracted attention as a complementary solution to chemical methods. These inhibitors, which include carbon-based, silicon-based, metal-based, and mineral-based particle materials, provide structural support to the wellbore by physically plugging fractures and sealing microfractures. This paper presents a comprehensive review of the mineral types associated with shale wellbore instability as well as a critical analysis of the mechanisms, categories, and effectiveness of mechanical inhibitors in enhancing wellbore stability. The development challenges and prospects of mechanical inhibitors in water-based drilling fluids are also discussed. This review emphasizes the potential of mechanical inhibitors in reducing fluid invasion, preventing wellbore collapse, and improving overall drilling efficiency, which will help facilitate the development and large-scale application of mechanical inhibitors in drilling fluids.
Antiaging Properties of Kalanchoe blossfeldiana Ethanol Extract—Ex Vivo and In Vitro Studies
Authors: Stefanowicz-Hajduk Justyna , Nowak Anna , Hering Anna , Kucharski Łukasz , Graczyk Piotr , Kowalczyk Mariusz , Sulikowski Tadeusz , Muzykiewicz-Szymańska Anna
Published: November 2024

Species of the genus Kalanchoe have a long history of therapeutic use in ethnomedicine, linked to their remarkable medical properties. These species include Kalanchoe blossfeldiana succulents, which grow in tropical regions. Despite the great interest in this plant, there are no reports about its therapeutic effects on the skin. In this study, the antioxidant properties of K. blossfeldiana ethanol extracts and the skin permeation of a topical hydrogel containing the extract (HKB) were assessed. Additionally, the content of active compounds in the K. blossfeldiana extract was evaluated by UHPLC-MS and HPLC-UV. The extract was analyzed with three antioxidant assays: ABTS, DPPH, and FRAP. Furthermore, the antielastase and antihialuronidase properties of the tested extract were assessed. Ex vivo penetration studies were performed using the Franz diffusion cells. The estimation of the cytotoxicity of HKB was performed by using an MTT assay ((4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide) on the human fibroblasts HFF-1. The results obtained show that the antioxidant properties of K. blossfeldiana extract were similar to those of ascorbic acid, while antielastase and antihialuronidase tests indicated the strong antiaging and anti-inflammatory activity of the extract (IC50 was 26.8 ± 0.13 and 77.31 ± 2.44 µg/mL, respectively). Moreover, active ingredients contained in K. blossfeldiana extract penetrated through the human skin and accumulated in it. The cytotoxicity test showed that HKB had no significant effect on human fibroblasts at a concentration up to 0.5%. In conclusion, the hydrogel containing the K. blossfeldiana extract can be considered as an interesting and new alternative to dermatologic and cosmetic preparations.
CuI-Zeolite Catalysis for Biaryl Synthesis via Homocoupling Reactions of Phenols or Aryl Boronic Acids
Authors: Di Xiaohui , Garnier Tony , Clerc Arnaud , Jung Eliott , Lherbet Christian , Bénéteau Valérie , Pale Patrick , Chassaing Stefan
Published: November 2024

Due to the importance of biaryls as natural products, drugs, agrochemicals, dyes, or organic electronic materials, a green alternative biaryl synthesis has been developed based on easy-to-prepare and cheap copper(I)-exchanged zeolite catalysts. CuI-USY proved to efficiently catalyze the direct homocoupling of either phenols or aryl boronic acids under simple and practical conditions. The CuI-USY-catalyzed oxidative homocoupling of phenols could conveniently be performed under air either in warm methanol or water with good to high yields. In methanol, a small amount of Cs2CO3 was required, while none was necessary in water. The homocoupling of aryl boronic acids was best performed also in warm methanol, without an additive. These mild conditions showed good functional-group tolerance, leading to a variety of substituted (hetero)biaryls (28 examples). The heterogeneous CuI-USY catalyst could readily be recovered and reused. Interestingly, the homocoupling of vinyl boronic acids was successfully coupled to a Diels–Alder reaction, even in a one-pot process, allowing access to highly functionalized cyclohexenes.
Green Microfluidic Method for Sustainable and High-Speed Analysis of Basic Amino Acids in Nutritional Supplements
Authors: Pukleš Iva , Páger Csilla , Sakač Nikola , Šarkanj Bojan , Marković Dean , Sakač Marija Kraševac , Jozanović Marija
Published: November 2024

Amino acids (AAs) have broad nutritional, therapeutic, and medical significance and thus are one of the most common active ingredients of nutritional supplements. Analytical strategies for determining AAs are high-priced and often limited to methods that require modification of AA polarity or incorporation of an aromatic moiety. The aim of this work was to develop a new method for the determination of L-arginine, L-ornithine, and L-lysine on low-cost microchip electrophoresis instrumentation conjugated with capacitively coupled contactless conductivity detection. A solution consisting of 0.3 M acetic acid and 1 × 10−5 M iminodiacetic acid has been identified as the optimal background electrolyte, ensuring the shortest possible analysis time. The short migration times of amino acids (t ≤ 64 s) and method simplicity resulted in high analysis throughput with high precision and linearity (R2≥ 0.9971). The limit of detection values ranged from 0.15 to 0.19 × 10−6 M. The accuracy of the proposed method was confirmed by recovery measurements. The results were compared with CE-UV-VIS and HPLC-DAD methods and showed good agreement. This work represents the first successful demonstration of the ME-C4D analysis of L-arginine, L-ornithine, and L-lysine in real samples.
Anti-Inflammatory and Neurotrophic Factor Production Effects of 3,5,6,7,8,3′,4′-Heptamethoxyflavone in the Hippocampus of Lipopolysaccharide-Induced Inflammation Model Mice
Authors: Omasa Toshiki , Sawamoto Atsushi , Nakajima Mitsunari , Okuyama Satoshi
Published: November 2024

Citrus fruits contain several bioactive components. Among them, one of the major components is 3,5,6,7,8,3′,4′-heptamethoxyflavone (HMF), which has previously shown protective effects in the brain in some disease models; moreover, HMF has been shown to penetrate the brain. In recent years, inflammation has been identified as a defense response in the body; however, a chronic inflammatory response may trigger several diseases. Inflammation in the peripheral tissues spreads to the brain and is suggested to be closely associated with diseases of the central nervous system. HMF has shown anti-inflammatory effects in the hippocampus following global cerebral ischemia; however, its effects on acute and chronic inflammation in the brain remain unclear. Therefore, in the present study, we examined the effects of HMF in a mouse model of systemic inflammation induced by lipopolysaccharide (LPS) administration. In this study, HMF suppressed LPS-induced microglial activation in the brains of acute inflammation model mice two days after LPS administration. In addition, 24 days after the administration of LPS in a chronic inflammation model, HMF promoted BDNF production and neurogenesis in the brain, which also tended to suppress tau protein phosphorylation at Ser396. These results suggest that HMF has anti-inflammatory and neurotrophic effects in the brains of model mice with lipopolysaccharide-induced systemic inflammation.
The Lattice Mismatch-Driven Photochemical Self-Assembly of Supported Heterostructures for Stable and Enhanced Electrocatalytic Carbon Dioxide Reduction Reaction
Authors: Liu Yidan , Ren Xu , Ji Yali , Li Ting , Jia Rongrong , Shi Liyi , Zhou Wenlong , Qiao Xiran , Huang Lei
Published: November 2024

Metallic heterostructural nanocrystals (HNCs) hold immense potential in electrocatalytic carbon dioxide reduction reaction (CO2RR) owing to their abundant active sites and high intrinsic activity. However, a significant challenge still remains in achieving controlled nucleation and growth sites for HNCs on supports and comprehending the influence of the structure–activity relationship on electrocatalytic CO2RR performance. This work presents a photochemical self-assembly technique without the necessity for reducing agents or facet-specific capping agents. By controlling lattice mismatch and manipulating transfer paths of photo-generated carriers, we can precisely direct the growth sites and nucleation of nanocrystals, enabling the self-assembly of supported core–shell and Janus nanostructures. Compared to Pd(T)@Au core–shell HNCs with the same loading, Pd cube–Au Janus HNCs exhibit significantly enhanced selectivity and stability toward carbon monoxide (CO) production in CO2RR at less negative potentials. The Pd cube–Au Janus HNC electrocatalyst achieved a Faradaic efficiency (FE) of 92.6 ± 3.5% for CO electroreduction, accompanied by a current density of 72.3 mA·cm−2 at −0.58 V. This work provides an effective strategy for designing advanced supported tandem electrocatalysts to boost the selectivity and durability test of CO2RR.
Ammonium Dinitramide as a Prospective N–NO2 Synthon: Electrochemical Synthesis of Nitro-NNO-Azoxy Compounds from Nitrosoarenes
Authors: Budnikov Alexander S. , Leonov Nikita E. , Klenov Michael S. , Shevchenko Mikhail I. , Dvinyaninova Tatiana Y. , Krylov Igor B. , Churakov Aleksandr M. , Fedyanin Ivan V. , Tartakovsky Vladimir A. , Terent’ev Alexander O.
Published: November 2024

In this study, the electrochemical coupling of nitrosoarenes with ammonium dinitramide is discovered, leading to the facile construction of the nitro-NNO-azoxy group, which represents an important motif in the design of energetic materials. Compared to known approaches to nitro-NNO-azoxy compounds involving two chemical steps (formation of azoxy group containing a leaving group and its nitration) and demanding expensive, corrosive, and hygroscopic nitronium salts, the presented electrochemical method consists of a single step and is based solely on nitrosoarenes and ammonium dinitramide. The dinitramide salt plays the roles of both the electrolyte and reactant for the coupling. Despite the fact that many side reactions can be expected due to the redox-activity of both the reagents and target products, under optimized conditions the synthesis is performed in an undivided cell under constant current conditions with high current density and can be easily scaled up without a reduction in the product yield. Moreover, the synthesized nitro-NNO-azoxy compounds are discovered to be potent fungicides active against a broad range of phytopathogenic fungi.
Navigating the COVID-19 Therapeutic Landscape: Unveiling Novel Perspectives on FDA-Approved Medications, Vaccination Targets, and Emerging Novel Strategies
Authors: Barghash Reham F. , Gemmati Donato , Awad Ahmed M. , Elbakry Mustafa M. M. , Tisato Veronica , Awad Kareem , Singh Ajay Vikram
Published: November 2024

Amidst the ongoing global challenge of the SARS-CoV-2 pandemic, the quest for effective antiviral medications remains paramount. This comprehensive review delves into the dynamic landscape of FDA-approved medications repurposed for COVID-19, categorized as antiviral and non-antiviral agents. Our focus extends beyond conventional narratives, encompassing vaccination targets, repurposing efficacy, clinical studies, innovative treatment modalities, and future outlooks. Unveiling the genomic intricacies of SARS-CoV-2 variants, including the WHO-designated Omicron variant, we explore diverse antiviral categories such as fusion inhibitors, protease inhibitors, transcription inhibitors, neuraminidase inhibitors, nucleoside reverse transcriptase, and non-antiviral interventions like importin α/β1-mediated nuclear import inhibitors, neutralizing antibodies, and convalescent plasma. Notably, Molnupiravir emerges as a pivotal player, now licensed in the UK. This review offers a fresh perspective on the historical evolution of COVID-19 therapeutics, from repurposing endeavors to the latest developments in oral anti-SARS-CoV-2 treatments, ushering in a new era of hope in the battle against the pandemic.
Identification of Cherry Tomato Volatiles Using Different Electron Ionization Energy Levels
Authors: Radványi Dalma , Csambalik László , Szakál Dorina , Gere Attila
Published: November 2024

A comprehensive analysis of the volatile components of 11 different cherry tomato pastes (Tesco Extra, Orange, Zebra, Yellow, Round Netherland, Mini San Marzano, Spar truss, Tesco Sunstream, Paprikakertész, Mc Dreamy, and Tesco Eat Fresh) commercially available in Hungary was performed. In order to ensure the reliability and accuracy of the measurement, the optimal measurement conditions were first determined. SPME (solid-phase microextraction) fiber coating, cherry tomato paste treatment, and SPME sampling time and temperature were optimized. CAR/PDMS (carboxen/polydimethylsiloxane) fiber coating with a film thickness of 85 µm is suggested at a 60 °C sampling temperature and 30 min extraction time. A total of 64 common compounds was found in the prepared, mashed cherry tomato samples, in which 59 compounds were successfully identified. Besides the already published compounds, new, cherry tomato-related compounds were found, such as 3 methyl 2 butenal, heptenal, Z-4-heptenal, E-2-heptenal, E-carveol, verbenol, limonene oxide, 2-decen-1-ol, Z-4-decen-1-al, caryophyllene oxide, and E,E-2,4-dodecadienal. Supervised and unsupervised classification methods have been used to classify the tomato varieties based on their volatiles, which identified 16 key components that enable the discrimination of the samples with a high accuracy.
Impact of Alkali Metals on CeO2-WO3/TiO2 Catalysts for NH3-Selective Catalytic Reduction and Lifetime Prediction of Catalysts
Authors: Xu Mutao , Deng Yuhang , Gao Xingxiu , Jin Qijie , Yan Wei , Chen Liguo , Yang Jian , Song Jing , Zhou Changcheng , Xu Haitao
Published: November 2024

Ce-based catalysts have been widely used in the removal of nitrogen oxides from industrial flue gas because of their good catalytic performance and environmental friendliness. However, the mechanism of alkali metal poisoning in Ce-based catalysts remains to be further studied. This work involves the preparation of the K/Na-poisoned CeWTi catalyst via the impregnation method for assessing its performance in NO removal. Experiments show that both K and Na exhibit detrimental effects on the CeWTi catalyst, and the loading of alkali metal reduces the specific surface area and pore volume of the catalyst. Furthermore, the presence of alkaline metals results in a notable decline in the CeWTi acid concentration, particularly in Lewis acid sites. Concurrently, the levels of Ce3+, oxygen vacancies, and reducing agents on the catalyst surface decrease, leading to diminished reduction capability and eventual catalyst deactivation. The application of a BP neural network for catalyst activity prediction yielded an average relative error of approximately 0.73%, indicating enhanced accuracy in prediction outcomes. This work explored the cause of alkali metal poisoning of the CeWTi catalyst and provided an effective prediction method for the lifetime of CeWTi catalyst, which provided theoretical guidance for the engineering application of Ce-based catalysts.
AI-Assisted High-Throughput Tissue Microarray Workflow
Authors: Kurowski Konrad , Timme Sylvia , Föll Melanie Christine , Backhaus Clara , Holzner Philipp Anton , Bengsch Bertram , Schilling Oliver , Werner Martin , Bronsert Peter
Published: November 2024

Immunohistochemical (IHC) studies of formalin-fixed paraffin-embedded (FFPE) samples are a gold standard in oncology for tumor characterization, and the identification of prognostic and predictive markers. However, despite the abundance of archived FFPE samples, their research use is limited due to the labor-intensive nature of IHC on large cohorts. This study aimed to create a high-throughput workflow using modern technologies to facilitate IHC biomarker studies on large patient groups. Semiautomatic constructed tissue microarrays (TMAs) were created for two tumor patient cohorts and IHC stained for seven antibodies (ABs). AB expression in the tumor and surrounding stroma was quantified using the AI-supported image analysis software QuPath. The data were correlated with clinicopathological information using an R-script, all results were automatically compiled into formatted reports. By minimizing labor time to 7.7%—compared to whole-slide studies—the established workflow significantly reduced human and material resource consumption. It successfully correlated AB expression with overall patient survival and additional clinicopathological data, providing publication-ready figures and tables. The AI-assisted high-throughput TMA workflow, validated on two patient cohorts, streamlines modern histopathological research by offering cost and time efficiency compared to traditional whole-slide studies. It maintains research quality and preserves patient tissue while significantly reducing material and human resources, making it ideal for high-throughput research centers and collaborations.
Thin Films of BaM Hexaferrite with an Inclined Orientation of the Easy Magnetization Axis: Crystal Structure and Magnetic Properties
Authors: Krichevtsov Boris , Korovin Alexander , Fedorov Vladimir , Suturin Sergey , Levin Aleksandr A. , Telegin Andrey , Balashova Elena , Sokolov Nikolai
Published: November 2024

Thin (~50 nm thick) BaM hexaferrite (BaFe12O19) films were grown on (1–102) and (0001) cut α-Al2O3 (sapphire) substrates via laser molecular beam epitaxy using a one- or two-stage growth protocol. The advantages of a two-stage protocol are shown. The surface morphology, structural and magnetic properties of films were studied using atomic force microscopy, reflected high-energy electron diffraction, three-dimensional X-ray diffraction reciprocal space mapping, powder X-ray diffraction, magneto-optical, and magnetometric methods. Annealed BaFe12O19/Al2O3 (1–102) structures consist of close-packed islands epitaxially bonded to the substrate. The hexagonal crystallographic axis and the easy axis (EA) of the magnetization of the films are deflected from the normal to the film by an angle of φ~60°. The films exhibit magnetic hysteresis loops for both in-plane Hin-plane and out-of-plane Hout-of-plane magnetic fields. The shape of Mout-of-plane(Hin-plane) and Min-plane(Hin-plane) hysteresis loops strongly depends on the azimuth θ of the Hin plane, confirming the tilted orientation of the EA. The Mout-of-plane(Hout-of-plane) magnetization curves are caused by the reversible rotation of magnetization and irreversible magnetization jumps associated with the appearance and motion of domain walls. In the absence of a magnetic field, the magnetization is oriented at an angle close to φ.
High-Performance Memristive Synapse Based on Space-Charge-Limited Conduction in LiNbO3
Authors: Lee Youngmin , Lee Sejoon
Published: November 2024

Advancing neuromorphic computing technology requires the development of versatile synaptic devices. In this study, we fabricated a high-performance Al/LiNbO3/Pt memristive synapse and emulated various synaptic functions using its primary key operating mechanism, known as oxygen vacancy-mediated valence charge migration (VO-VCM). The voltage-controlled VO-VCM induced space-charge-limited conduction and self-rectifying asymmetric hysteresis behaviors. Moreover, the device exhibited voltage pulse-tunable multi-state memory characteristics because the degree of VO-VCM was dependent on the applied pulse parameters (e.g., polarity, amplitude, width, and interval). As a result, synaptic functions such as short-term memory, dynamic range-tunable long-term memory, and spike time-dependent synaptic plasticity were successfully demonstrated by modulating those pulse parameters. Additionally, simulation studies on hand-written image pattern recognition confirmed that the present device performed with high accuracy, reaching up to 95.2%. The findings suggest that the VO-VCM-based Al/LiNbO3/Pt memristive synapse holds significant promise as a brain-inspired neuromorphic device.
C/Ni/N Nanocomposites Based on Hydrolysis Lignin: Synthesis, Study of Structural and Magnetic Properties
Authors: Bordun Ihor , Calus Dariusz , Szymczykiewicz Ewelina , Malovanyy Myroslav , Nahurskyi Nazar , Borysiuk Anatoliy , Kulyk Yuriy
Published: November 2024

A two-step method for the synthesis of C/Ni/N nanocomposites based on hydrolysis lignin from wood chemical processing waste is proposed. These nanocomposites were found to have a well-developed porous structure with a wide pore size distribution. It was shown that doping hydrolysis lignin with urea-derived nitrogen leads to the appearance of ferromagnetic behavior in the carbon material. When nickel chloride was added during pyrolysis, the magnetic behavior of the C/Ni/N composite was provided by superparamagnetic Ni particles less than 30 nm in size and the magnetism of the carbon matrix. The addition of urea during the synthesis of the nanocomposite further promotes better integration of nickel into the carbon structure. According to the results of magnetic studies, the nickel content in the C/Ni/N nanocomposite was 19 wt.% compared to 15 wt.% in the C/Ni nanocomposite. The synthesized nanocomposite was demonstrated to have no residual magnetization, so its particles do not agglomerate after the external magnetic field is removed. Due to this property and the well-developed porous structure, C/Ni/N composites have the potential to be used as catalysts, active electrode materials for autonomous energy sources, and in environmental technologies as magnetically sensitive adsorbents.
Bamboo Kraft Pulp Black Liquor as a Renewable Source of Value-Added Carbon Dots
Authors: Qiao Xiaolong , Wang Shixing , Liu Qiulian , Zhang Yuanming , Han Guangting , Ben Haoxi , Jiang Wei , Zhao Haiguang , Song Yan
Published: November 2024

China is the country with the most abundant bamboo resources in the world. Using bamboo as a raw material for pulping and papermaking can save a lot of wood and protect forests. Bamboo pulping enterprises mostly adopt sulfate processes to produce a large amount of black liquor (BL), which contains monosaccharides, polysaccharides, oligosaccharides, pectin, lignin, etc. The utilization of the high-value organic matter is of great economic and environmental significance. In this study, blue-green carbon dots (C-dots) were prepared from bamboo (Lingnania chungii) kraft pulp BL using a hydrothermal method. The changes in carbohydrate content in BL in relation to hydrothermal temperature and hydrothermal time were discussed in detail. Then, a series of characterizations of BL-C-dots, prepared under one of the hydrothermal conditions (180 °C, 6 h), were performed and the BL-C-dots showed an excitation-dependent photoluminescence (PL) spectrum and a quantum yield (QY) of 2.9% in an aqueous solution. Finally, the as-prepared BL-C-dots were successfully used as fluorescent materials to develop an anti-counterfeiting code. The fluorescent code exhibited a clear outline, an excitation-tunable color, good stability, and high security, showing great anti-counterfeiting potential and realizing the high-value utilization of BL.
Innovative Carbonaceous Materials and Metal/Metal Oxide Nanoparticles for Electrochemical Biosensor Applications
Authors: Channabasavana Hundi Puttaningaiah Keshavananda Prabhu
Published: November 2024

Electrochemical biosensors have emerged as predominant devices for sensitive, rapid, and specific sensing of biomolecules, with significant applications in clinical diagnostics, environmental observation, and food processing. The improvement of inventive materials, especially carbon-based materials, and metal/metal oxide nanoparticles (M/MONPs), has changed the impact of biosensing, improving the performance and flexibility of electrochemical biosensors. Carbon-based materials, such as graphene, carbon nanotubes, and carbon nanofibers, have excellent electrical conductivity, a high surface area, large pore size, and good biocompatibility, making them ideal electrocatalysts for biosensor applications. Furthermore, M and MONPs have highly effective synergistic, electronic, and optical properties that influence signal transduction, selectivity, and sensitivity. This study completely explored continuous progressions and upgrades in carbonaceous materials (CBN materials) and M/MONPs for electrochemical biosensor applications. It analyzed the synergistic effects of hybrid nanocomposites that combine carbon materials with metal nanoparticles (MNPs) and their part in upgrading sensor performance. The paper likewise incorporated the surface alteration procedures and integration of these materials into biosensor models. The study examined difficulties, requirements, and possibilities for executing these innovative materials in practical contexts. This overview aimed to provide specialists with insights into the most recent patterns in the materials study of electrochemical biosensors and advance further progressions in this dynamic sector.
Elongated Particles Show a Preferential Uptake in Invasive Cancer Cells
Authors: Cohen Talya , Zemmour Chalom , Cohen Ora T. , Benny Ofra
Published: November 2024

Mechanically driven cellular preference for drug carriers can enhance selectivity in cancer therapy, underscoring the importance of understanding the physical aspects of particle uptake. In this study, it was hypothesized that elongated particles might be preferentially taken up by deformable, aggressive cancer cells compared to normal cells. Two film-stretching methods were tested for 0.8–2.4 μm polystyrene (PS) particles: one based on solubility in organic solvents and the other on heat-induced softening. The heat-induced method produced more homogenous particle batches, with a standard deviation in the particle aspect ratio of 0.42 compared to 0.91 in the solvent-based method. The ability of cells to engulf elongated PS particles versus spherical particles was assessed in two subsets of human melanoma A375 cells. In the more aggressive cancer cell subset (A375+), uptake of elongated PS particles increased by 10% compared to spherical particles. In contrast, the less aggressive subset (A375−) showed a 25% decrease in uptake of elongated particles. This resulted in an uptake ratio between A375+ and A375− that was 1.5 times higher for elongated PS particles than for spherical ones. To further demonstrate relevance to drug delivery, elongated paclitaxel-loaded biodegradable, slow-releasing poly(lactic-co-glycolic) acid (PLGA) particles were synthesized. No significant difference in cytotoxic effect was observed between A375+ and A375− cells treated with spherical drug-loaded particles. However, treatment with ellipsoidal particles led to a significantly enhanced cytotoxic effect in aggressive cells compared to less aggressive cells. These findings present promising directions for tailored cancer drug delivery and demonstrate the importance of particle physical properties in cellular uptake and drug delivery mechanisms.