bluuebunny/crossref_metadata_2025 huggingface dataset:
Towards Improved Classification Accuracy on Highly Imbalanced Text Dataset Using Deep Neural Language Models
Authors: Shaikh Sarang , Daudpota Sher Muhammad , Imran Ali Shariq , Kastrati Zenun
Published: January 2021

Data imbalance is a frequently occurring problem in classification tasks where the number of samples in one category exceeds the amount in others. Quite often, the minority class data is of great importance representing concepts of interest and is often challenging to obtain in real-life scenarios and applications. Imagine a customers’ dataset for bank loans-majority of the instances belong to non-defaulter class, only a small number of customers would be labeled as defaulters, however, the performance accuracy is more important on defaulters labels than non-defaulter in such highly imbalance datasets. Lack of enough data samples across all the class labels results in data imbalance causing poor classification performance while training the model. Synthetic data generation and oversampling techniques such as SMOTE, AdaSyn can address this issue for statistical data, yet such methods suffer from overfitting and substantial noise. While such techniques have proved useful for synthetic numerical and image data generation using GANs, the effectiveness of approaches proposed for textual data, which can retain grammatical structure, context, and semantic information, has yet to be evaluated. In this paper, we address this issue by assessing text sequence generation algorithms coupled with grammatical validation on domain-specific highly imbalanced datasets for text classification. We exploit recently proposed GPT-2 and LSTM-based text generation models to introduce balance in highly imbalanced text datasets. The experiments presented in this paper on three highly imbalanced datasets from different domains show that the performance of same deep neural network models improve up to 17% when datasets are balanced using generated text.
Retrospective Analysis of the Effect of Three-Dimensional Preformed Titanium Mesh on Peri-Implant Non-Contained Horizontal Defects in 100 Consecutive Cases
Authors: Choi In-Oh , Oh Ji-Su , Yu Sang-Joun , Kim Byung-Ock , Lee Won-Pyo
Published: January 2021

This study aimed to clinically and radiographically evaluate the results of guided bone regeneration (GBR) using three-dimensional preformed titanium mesh (3-D-PFTM) for non-contained horizontal defects in 100 consecutive cases. This study involved 100 patients (129 implants) with peri-implant non-contained horizontal defects. The patients were divided into three groups: 3-D-PFTM alone (Group 1), 3-D-PFTM plus cross-linked collagen membrane (Group 2), and 3-D-PFTM plus non-cross-linked collagen membrane (Group 3). Each implant was evaluated radiographically using CBCT at baseline and 6 months postoperatively. At the platform level, the mean horizontal hard tissue gain of all the sites was 3.1 ± 1.3 mm at 6 months postoperatively. The mean rate of mesh exposure was 11.8% in Group 1, 4.2% in Group 2, and 5.0% in Group 3. The mean hard tissue gain rate was 71.0 ± 23.0% in group 1, 84.2 ± 21.5% in group 2, and 84.0 ± 22.9% in group 3. Groups 2 and 3 showed significantly higher hard tissue gain rates than group 1. However, there was no significant difference between the rates in groups 2 and 3. Within the limitations of this study, 3-D-PFTM should be considered as a valuable option for GBR for peri-implant non-contained horizontal defects. The use of an additional resorbable collagen membrane provides additional advantages.
Anthropometric Profiles in Table Tennis Players: Analysis of Sex, Age, and Ranking
Authors: Pradas Francisco , de la Torre Ana , Carrasco Luis , Muñoz Diego , Courel-Ibáñez Javier , González-Jurado José Antonio
Published: January 2021

Table tennis has recently evolved towards a more spectacular sport increasing match-play demands and the intensity and speed of actions by regulations and equipment modification. Since these changes can alter the body composition and performance, this study aimed to analyze the differences in anthropometric attributes of 495 table tennis players (288 men, 207 women) according to sex, age, and ranking. Players were classified according to sex, age categories (Senior, Under-18, Under-15, Under 13, and Under 11), and ranking position. Anthropometry measurements included eight skinfolds’ thicknesses (biceps brachii, triceps, subscapular, iliac crest, supraspinal, abdominal, thigh, and medial calf), four girths (biceps brachii relaxed and contracted, thigh, and calf), and three breadths (biepicondylar femur, biepicondylar humerus, and bistiloyd wrist) to determine fat mass, lean mass, bone, cross sectional area (CSA) for arm, leg, and thigh, and somatotype. Results revealed that table tennis players presented differences in body mass composition, anthropometry, and somatotype according to sex and age category and ranking. It seems confirmed that regular table tennis practice during the childhood is associated with a healthy body composition status, that appears to be maintained across older ages if keeping the practice. Senior table tennis players showed a fat mass <20% and lean mass ~45% in men and ~37% in women. A new contribution is that higher lean mass in the upper limbs was associated with higher ranking position (i.e., better performance), endomorphic somatotypes were negative related to performance, and ectomorphic profiles seems more effective, which suggest the potential influence of morphologic changes in table tennis competition performance.
Experimental Research on Foil Vibrations in a Gas Foil Bearing Carried Out Using an Ultra-High-Speed Camera
Authors: Breńkacz Łukasz , Bagiński Paweł , Żywica Grzegorz
Published: January 2021

The foil bearing consists of parts made of very thin, properly shaped foils. Usually, it is very difficult or even impossible to measure the vibrations of these elements during the bearing operation using traditional sensors. Therefore, the authors of this article have proposed an entirely new approach to this issue. This article discusses the analysis of vibrations of the structural supporting layer of a gas foil bearing at high rotational speeds. Instead of using a traditional method to measure the bearing journal movement, the measurement was performed using an ultra-high-speed digital camera. This type of measurement was used for the first time to analyse foil bearing displacement. It turned out that doing so can give a far more vibrant picture of what is happening in gas foil bearings during their operation. The article includes an analysis of foil vibrations. This phenomenon has already been analysed numerically, and this is the first time it has been analysed experimentally. The registered motion of the foils can be compared with the results obtained from numerical models, thus allowing their further development. One such comparison is shown in this article.
“Amplified Spontaneous Emission” in Micro- and Nanolasers
Authors: Lippi Gian Luca
Published: January 2021

Amplified Spontaneous Emission is ubiquitous in systems with optical gain and is responsible for many opportunities and shortcomings. Its role in the progression from the simplest form of thermal radiation (single emitter spontaneous emission) all the way to coherent radiation from inverted systems is still an open question. We critically review observations of photon bursts in micro- and nanolasers, in the perspective of currently used measurement techniques, in relation to threshold-related questions for small devices. Corresponding stochastic predictions are analyzed, and contrasted with burst absence in differential models, in light of general phase space properties. A brief discussion on perspectives is offered in the conclusions.
The Effect of Input Parameter Variation on the Accuracy of a Vanadium Redox Flow Battery Simulation Model
Authors: Zugschwert Christina , Dundálek Jan , Leyer Stephan , Hadji-Minaglou Jean-Régis , Kosek Juraj , Pettinger Karl-Heinz
Published: January 2021

Accurately predicting battery behavior, while using low input data, is highly desirable in embedded simulation architectures like grid or integrated energy system analysis. Currently, the available vanadium redox flow battery (VRFB) models achieve highly accurate predictions of electrochemical behavior or control algorithms, while the optimization of the required input data scope is neglected. In this study, a parametrization tool for a DC grey box simulation model is developed using measurements with a 10 kW/100 kWh VRFB. An objective function is applied to optimize the required input data scope while analyzing simulation accuracy. The model is based on a differential-algebraic system, and an optimization process allows model parameter estimation and verification while reducing the input data scope. Current losses, theoretical storage capacity, open circuit voltage, and ohmic cell resistance are used as fitting parameters. Internal electrochemical phenomena are represented by a self-discharge current while material related losses are represented by a changing ohmic resistance. Upon reducing input data the deviation between the model and measurements shows an insignificant increase of 2% even for a 60% input data reduction. The developed grey box model is easily adaptable to other VRFB and is highly integrable into an existing energy architecture.
Delivery of the 5-HT2A Receptor Agonist, DOI, Enhances Activity of the Sphincter Muscle during the Micturition Reflex in Rats after Spinal Cord Injury
Authors: DeFinis Jaclyn H. , Weinberger Jeremy , Hou Shaoping
Published: January 2021

Traumatic spinal cord injury (SCI) interrupts spinobulbospinal micturition reflex pathways and results in urinary dysfunction. Over time, an involuntary bladder reflex is established due to the reorganization of spinal circuitry. Previous studies show that manipulation of serotonin 2A (5-HT2A) receptors affects recovered bladder function, but it remains unclear if this receptor regulates the activity of the external urethral sphincter (EUS) following SCI. To elucidate how central and peripheral serotonergic machinery acts on the lower urinary tract (LUT) system, we employed bladder cystometry and EUS electromyography recordings combined with intravenous or intrathecal pharmacological interventions of 5-HT2A receptors in female SCI rats. Three to four weeks after a T10 spinal transection, systemic and central blockage of 5-HT2A receptors with MDL only slightly influenced the micturition reflex. However, delivery of the 5-HT2A receptor agonist, DOI, increased EUS tonic activity and elicited bursting during voiding. Additionally, subcutaneous administration of DOI verified the enhancement of continence and voiding capability during spontaneous micturition in metabolic cage assays. Although spinal 5HT2A receptors may not be actively involved in the recovered micturition reflex, stimulating this receptor subtype enhances EUS function and the synergistic activity between the detrusor and sphincter to improve the micturition reflex in rats with SCI.
Salivary Gland Dysfunction in Patients with Chronic Heart Failure Is Aggravated by Nitrosative Stress, as Well as Oxidation and Glycation of Proteins
Authors: Klimiuk Anna , Zalewska Anna , Knapp Małgorzata , Sawicki Robert , Ładny Jerzy Robert , Maciejczyk Mateusz
Published: January 2021

Chronic heart failure (HF) is an important clinical, social, and economic problem. A key role in HF progression is played by oxidative stress. Free oxygen radicals, formed under the conditions of hypoxia and reperfusion, participate in myocardial stunning and other forms of post-reperfusion damage. HF patients also suffer from disorders connected with saliva secretion. However, still little is known about the mechanisms that impair the secretory function of salivary glands in these patients. In the presented study, we were the first to compare the antioxidant barrier, protein glycoxidation, and nitrosative/nitrative stress in non-stimulated (non-stimulated whole saliva (NWS)) and stimulated (SWS) saliva of HF patients. The study included 50 HF patients with normal saliva (NS) secretion (n = 27) and hyposalivation (HS) (n = 23), as well as an age- and gender-matched control group (n = 50). We demonstrated that, in NWS of HF patients with HS, the concentration of low-molecular-weight non-enzymatic antioxidants decreased (↓total polyphenols, ↓ascorbic acid, ↓reduced glutathione, ↓albumin) compared to HF patients with normal saliva (NS) secretion, as well as the control group (except albumin). We also observed increased content of protein glycoxidation products (↑dityrosine, ↑kynurenine, ↑glycophore) in NWS and SWS of HF patients with HS compared to healthy controls. Interestingly, the content of dityrosine, N-formylkynurenine, and glycophore in NWS was also significantly higher in HF patients with HS compared to those with NS secretion. The concentration of NO was considerably lower, while the levels of peroxynitrite and nitrotyrosine were significantly higher in NWS and SWS of HF subjects with HS compared to the controls. Salivary gland dysfunction occurs in patients with chronic HF with the submandibular salivary glands being the least efficient. Oxidative/nitrosative stress may be one of the mechanisms responsible for the impairment of salivary gland secretory function in HF patients.
Focus on Osteosclerotic Progression in Primary Myelofibrosis
Authors: Spampinato Mariarita , Giallongo Cesarina , Romano Alessandra , Longhitano Lucia , La Spina Enrico , Avola Roberto , Scandura Grazia , Dulcamare Ilaria , Bramanti Vincenzo , Di Rosa Michelino , Vicario Nunzio , Parenti Rosalba , Li Volti Giovanni , Tibullo Daniele , Palumbo Giuseppe A.
Published: January 2021

Primary myelofibrosis (PMF) is a myeloproliferative neoplasm characterized by hematopoietic stem-cell-derived clonal proliferation, leading to bone marrow (BM) fibrosis. Hematopoiesis alterations are closely associated with modifications of the BM microenvironment, characterized by defective interactions between vascular and endosteal niches. As such, neoangiogenesis, megakaryocytes hyperplasia and extensive bone marrow fibrosis, followed by osteosclerosis and bone damage, are the most relevant consequences of PMF. Moreover, bone tissue deposition, together with progressive fibrosis, represents crucial mechanisms of disabilities in patients. Although the underlying mechanisms of bone damage observed in PMF are still unclear, the involvement of cytokines, growth factors and bone marrow microenvironment resident cells have been linked to disease progression. Herein, we focused on the role of megakaryocytes and their alterations, associated with cytokines and chemokines release, in modulating functions of most of the bone marrow cell populations and in creating a complex network where impaired signaling strongly contributes to progression and disabilities.
Rose Flowers—A Delicate Perfume or a Natural Healer?
Authors: Mileva Milka , Ilieva Yana , Jovtchev Gabriele , Gateva Svetla , Zaharieva Maya Margaritova , Georgieva Almira , Dimitrova Lyudmila , Dobreva Ana , Angelova Tsveta , Vilhelmova-Ilieva Nelly , Valcheva Violeta , Najdenski Hristo
Published: January 2021

Plants from the Rosacea family are rich in natural molecules with beneficial biological properties, and they are widely appreciated and used in the food industry, perfumery, and cosmetics. In this review, we are considering Rosa damascena Mill., Rosa alba L., Rosa centifolia L., and Rosa gallica L. as raw materials important for producing commercial products, analyzing and comparing the main biological activities of their essential oils, hydrolates, and extracts. A literature search was performed to find materials describing (i) botanical characteristics; (ii) the phytochemical profile; and (iii) biological properties of the essential oil sand extracts of these so called “old roses” that are cultivated in Bulgaria, Turkey, India, and the Middle East. The information used is from databases PubMed, Science Direct, and Google Scholar. Roses have beneficial healing properties due to their richness of beneficial components, the secondary metabolites as flavonoids (e.g., flavones, flavonols, anthocyanins), fragrant components (essential oils, e.g., monoterpenes, sesquiterpenes), and hydrolysable and condensed tannins. Rose essential oils and extracts with their therapeutic properties—as respiratory antiseptics, anti-inflammatories, mucolytics, expectorants, decongestants, and antioxidants—are able to act as symptomatic prophylactics and drugs, and in this way alleviate dramatic sufferings during severe diseases.
Anti-Adipogenic Polyacetylene Glycosides from the Florets of Safflower (Carthamus tinctorius)
Authors: Baek Su Cheol , Yi Sang Ah , Lee Bum Soo , Yu Jae Sik , Kim Jin-Chul , Pang Changhyun , Jang Tae Su , Lee Jaecheol , Kim Ki Hyun
Published: January 2021

Safflower (Carthamus tinctorius) is an annual herb belonging to the Compositae family; it has a history of use as a food colorant, dye, and medicine in oriental countries. LC-MS-UV-based chemical analysis of extract of the florets of C. tinctorius led to the isolation of two new C10-polyacetylene glycosides, (8Z)-decaene-4,6-diyne-1,10-diol-1-O-β-d-glucopyranoside (1) and (8S)-deca-4,6-diyne-1,8-diol-1-O-β-d-glucopyranoside (2), together with five known analogs (3–7). The structures of the new compounds were determined by using 1D and 2D NMR spectroscopic data and HR-MS data, as well as chemical transformations. Of compounds 1–7, compounds 2, 3, and 4 inhibited the adipogenesis of 3T3-L1 preadipocytes, whereas compounds 1 and 6 promoted adipogenesis. Compounds 2, 3, and 4 also prevented lipid accumulation through the suppression of the expression of lipogenic genes and the increase of the expression of lipolytic genes. Moreover, compounds 3 and 4 activated AMPK, which is known to facilitate lipid metabolism. Our findings provide a mechanistic rationale for the use of safflower-derived polyacetylene glycosides as potential therapeutic agents against obesity.
Human VAMP3 Suppresses or Negatively Regulates Bax Induced Apoptosis in Yeast
Authors: Akintade Damilare D. , Chaudhuri Bhabatosh
Published: January 2021

Apoptosis is an essential process that is regulated genetically and could lead to a serious disease condition if not well controlled. Bax is one of the main proapoptotic proteins and actively involved in programmed cell death. It has been suggested that Bax induced apoptosis in yeast could be obstructed by enhancing vesicular membrane trafficking. Plasma membrane proteins and lipid oxidation were reduced by a vesicle-associated membrane protein (VAMP) when expressed in yeast, suggesting its potential role in repairing membranes. Membrane integrity is crucial, as the loss of membrane integrity will result in the leakage of ions from mitochondria, and ultimately cell death due to overproduction of reactive oxygen species (ROS). Expression of Arabidopsis’ VAMP has been linked to antiapoptosis activity. Since plant VAMP has been associated with antiapoptotic activities, this study investigates the possible participation of human VAMP3 in blocking human Bax mediated apoptosis. Some novel genes were identified to rescue Bax’s proapoptotic effects, in a yeast-based human hippocampal cDNA library screen. VAMP3 (a gene code for proteins involved in protein secretion) gene was chosen for further study to confirm its role in inhibiting apoptosis. VAMP3 was coexpressed with a chromosomally integrated Bax gene expression cassette driven by the GAL1 promoter. The antiapoptotic proteins of the Bcl-2 family (Bcl xL) were known to negate the proapoptotic properties of Bax. However, the new gene (VAMP3) results show that novel antiapoptotic proteins can be identified using a yeast-based assay. The findings presented here show that human VAMP3 protein has antiapoptotic property and could abrogate Bax induced apoptosis (cell death).
Quantitative E. coli Enzyme Detection in Reporter Hydrogel-Coated Paper Using a Smartphone Camera
Authors: Kaur Kawaljit , Chelangat Winny , Druzhinin Sergey I. , Karuri Nancy Wangechi , Müller Mareike , Schönherr Holger
Published: January 2021

There is a growing demand for rapid and sensitive detection approaches for pathogenic bacteria that can be applied by non-specialists in non-laboratory field settings. Here, the detection of the typical E. coli enzyme β-glucuronidase using a chitosan-based sensing hydrogel-coated paper sensor and the detailed analysis of the reaction kinetics, as detected by a smartphone camera, is reported. The chromogenic reporter unit affords an intense blue color in a two-step reaction, which was analyzed using a modified Michaelis–Menten approach. This generalizable approach can be used to determine the limit of detection and comprises an invaluable tool to characterize the performance of lab-in-a-phone type approaches. For the particular system analyzed, the ratio of reaction rate and equilibrium constants of the enzyme–substrate complex are 0.3 and 0.9 pM−1h−1 for β-glucuronidase in phosphate buffered saline and lysogeny broth, respectively. The minimal degree of substrate conversion for detection of the indigo pigment formed during the reaction is 0.15, while the minimal time required for detection in this particular system is ~2 h at an enzyme concentration of 100 nM. Therefore, this approach is applicable for quantitative lab-in-a-phone based point of care detection systems that are based on enzymatic substrate conversion via bacterial enzymes.
When, How, and to What Extent Are Individuals with Unresponsive Wakefulness Syndrome Able to Progress? Neurobehavioral Progress
Authors: Noé Enrique , Ferri Joan , Olaya José , Navarro María Dolores , O’Valle Myrtha , Colomer Carolina , Moliner Belén , Ippoliti Camilla , Maza Anny , Llorens Roberto
Published: January 2021

Accurate estimation of the neurobehavioral progress of patients with unresponsive wakefulness syndrome (UWS) is essential to anticipate their most likely clinical course and guide clinical decision making. Although different studies have described this progress and possible predictors of neurobehavioral improvement in these patients, they have methodological limitations that could restrict the validity and generalization of the results. This study investigates the neurobehavioral progress of 100 patients with UWS consecutively admitted to a neurorehabilitation center using systematic weekly assessments based on standardized measures, and the prognostic factors of changes in their neurobehavioral condition. Our results showed that, during the analyzed period, 34% of the patients were able to progress from UWS to minimally conscious state (MCS), 12% of the total sample (near one third from those who progressed to MCS) were able to emerge from MCS, and 10% of the patients died. Transition to MCS was mostly denoted by visual signs, which appeared either alone or in combination with motor signs, and was predicted by etiology and the score on the Coma Recovery Scale-Revised at admission with an accuracy of 75%. Emergence from MCS was denoted in the same proportion by functional communication and object use. Predictive models of emergence from MCS and mortality were not valid and the identified predictors could not be accounted for.
Acknowledgment to Reviewers of Buildings in 2020
Authors:   Buildings Editorial Office
Published: January 2021

Peer review is the driving force of journal development, and reviewers are gatekeepers who ensure that Buildings maintains its standards for the high quality of its published papers [...]
Prognostic Impacts of D816V KIT Mutation and Peri-Transplant RUNX1–RUNX1T1 MRD Monitoring on Acute Myeloid Leukemia with RUNX1–RUNX1T1
Authors: Cho Byung-Sik , Min Gi-June , Park Sung-Soo , Park Silvia , Jeon Young-Woo , Shin Seung-Hwan , Yahng Seung-Ah , Yoon Jae-Ho , Lee Sung-Eun , Eom Ki-Seong , Kim Yoo-Jin , Lee Seok , Min Chang-Ki , Cho Seok-Goo , Kim Dong-Wook , Wook-Lee Jong , Kim Myung-Shin , Kim Yong-Goo , Kim Hee-Je
Published: January 2021

The prognostic significance of KIT mutations and optimal thresholds and time points of measurable residual disease (MRD) monitoring for acute myeloid leukemia (AML) with RUNX1-RUNX1T1 remain controversial in the setting of hematopoietic stem cell transplantation (HSCT). We retrospectively evaluated 166 high-risk patients who underwent allogeneic (Allo-HSCT, n = 112) or autologous HSCT (Auto-HSCT, n = 54). D816V KIT mutation, a subtype of exon 17 mutations, was significantly associated with post-transplant relapse and poor survival, while other types of mutations in exons 17 and 8 were not associated with post-transplant relapse. Pre- and post-transplant RUNX1–RUNX1T1 MRD assessments were useful for predicting post-transplant relapse and poor survival with a higher sensitivity at later time points. Survival analysis for each stratified group by D816V KIT mutation and pre-transplant RUNX1–RUNX1T1 MRD status demonstrated that Auto-HSCT was superior to Allo-HSCT in MRD-negative patients without D816V KIT mutation, while Allo-HSCT was superior to Auto-HSCT in MRD-negative patients with D816V KIT mutation. Very poor outcomes of pre-transplant MRD-positive patients with D816V KIT mutation suggested that this group should be treated in clinical trials. Risk stratification by both D816V KIT mutation and RUNX1–RUNX1T1 MRD status will provide a platform for decision-making or risk-adapted therapeutic approaches.
Recent Advances and Future Directions in Clinical Management of Head and Neck Squamous Cell Carcinoma
Authors: Muzaffar Jameel , Bari Shahla , Kirtane Kedar , Chung Christine H.
Published: January 2021

Head and neck squamous cell carcinoma (HNSCC) is the most common cancer arising in the head and neck region. The most common risk factors are smoking, excessive drinking, and human papillomavirus (HPV) infection. While the overall incidence of smoking is decreasing, the incidence of HPV-related HNSCC is increasing in the United States and Western Europe, which led to a shift in understanding of the pathophysiology, treatment, and prognosis of this disease. The outcomes for non-metastatic HNSCC remains very encouraging and continues to improve. Advances in radiation technology and techniques, better organ preserving surgical options, and multidisciplinary treatment modalities have improved cure rates for locally advanced HNSCC patients. The treatment of metastatic disease, however, remains an area of need. The advancement of immune checkpoint inhibitors has provided significantly better outcomes, but only a small proportion of patients obtain benefits. Most recurrent and/or metastatic HNSCC patients continue to have poor survival. This has led to the vigorous investigation of new biomarkers and biomarker-based therapies. Novel therapeutic options including adaptive cellular therapy and therapeutic vaccines are also on the horizon. In this review, we highlight the latest advances in the field of HNSCC and the future direction of research.
Radiomics and Dosiomics for Predicting Local Control after Carbon-Ion Radiotherapy in Skull-Base Chordoma
Authors: Buizza Giulia , Paganelli Chiara , D’Ippolito Emma , Fontana Giulia , Molinelli Silvia , Preda Lorenzo , Riva Giulia , Iannalfi Alberto , Valvo Francesca , Orlandi Ester , Baroni Guido
Published: January 2021

Skull-base chordoma (SBC) can be treated with carbon ion radiotherapy (CIRT) to improve local control (LC). The study aimed to explore the role of multi-parametric radiomic, dosiomic and clinical features as prognostic factors for LC in SBC patients undergoing CIRT. Before CIRT, 57 patients underwent MR and CT imaging, from which tumour contours and dose maps were obtained. MRI and CT-based radiomic, and dosiomic features were selected and fed to two survival models, singularly or by combining them with clinical factors. Adverse LC was given by in-field recurrence or tumour progression. The dataset was split in development and test sets and the models’ performance evaluated using the concordance index (C-index). Patients were then assigned a low- or high-risk score. Survival curves were estimated, and risk groups compared through log-rank tests (after Bonferroni correction α = 0.0083). The best performing models were built on features describing tumour shape and dosiomic heterogeneity (median/interquartile range validation C-index: 0.80/024 and 0.79/0.26), followed by combined (0.73/0.30 and 0.75/0.27) and CT-based models (0.77/0.24 and 0.64/0.28). Dosiomic and combined models could consistently stratify patients in two significantly different groups. Dosiomic and multi-parametric radiomic features showed to be promising prognostic factors for LC in SBC treated with CIRT.
Integrin α3β1 Represses Reelin Expression in Breast Cancer Cells to Promote Invasion
Authors: Ndoye Abibatou , Miskin Rakshitha Pandulal , DiPersio C. Michael
Published: January 2021

Integrin α3β1, a cell adhesion receptor for certain laminins, is known to promote breast tumor growth and invasion. Our previous gene microarray study showed that the RELN gene, which encodes the extracellular glycoprotein Reelin, was upregulated in α3β1-deficient (i.e., α3 knockdown) MDA-MB-231 cells. In breast cancer, reduced RELN expression is associated with increased invasion and poor prognosis. In this study we demonstrate that α3β1 represses RELN expression to enhance breast cancer cell invasion. RELN mRNA was significantly increased upon RNAi-mediated α3 knockdown in two triple-negative breast cancer cell lines, MDA-MB-231 and SUM159. Modulation of baseline Reelin levels altered invasive potential, where enhanced Reelin expression in MDA-MB-231 cells reduced invasion, while RNAi-mediated suppression of Reelin in SUM159 cells increased invasion. Moreover, treatment of α3β1-expressing MDA-MB-231 cells with culture medium that was conditioned by α3 knockdown MDA-MB-231 cells led to decreased invasion. RNAi-mediated suppression of Reelin in α3 knockdown MDA-MB-231 cells mitigated this effect of conditioned-medium, identifying secreted Reelin as an inhibitor of cell invasion. These results demonstrate a novel role for α3β1 in repressing Reelin in breast cancer cells to promote invasion, supporting this integrin as a potential therapeutic target.
Pathogenesis and Diagnosis of Genitourinary Cancer
Authors: Guo Charles C. , Shen Steven S. , Ro Jae Y.
Published: January 2021

Genitourinary (GU) cancers are among the most common malignant diseases in men [...]
Roles of HIF and 2-Oxoglutarate-Dependent Dioxygenases in Controlling Gene Expression in Hypoxia
Authors: Frost Julianty , Frost Mark , Batie Michael , Jiang Hao , Rocha Sonia
Published: January 2021

Hypoxia—reduction in oxygen availability—plays key roles in both physiological and pathological processes. Given the importance of oxygen for cell and organism viability, mechanisms to sense and respond to hypoxia are in place. A variety of enzymes utilise molecular oxygen, but of particular importance to oxygen sensing are the 2-oxoglutarate (2-OG) dependent dioxygenases (2-OGDs). Of these, Prolyl-hydroxylases have long been recognised to control the levels and function of Hypoxia Inducible Factor (HIF), a master transcriptional regulator in hypoxia, via their hydroxylase activity. However, recent studies are revealing that dioxygenases are involved in almost all aspects of gene regulation, including chromatin organisation, transcription and translation. We highlight the relevance of HIF and 2-OGDs in the control of gene expression in response to hypoxia and their relevance to human biology and health.
[18F]FET PET Uptake Indicates High Tumor and Low Necrosis Content in Brain Metastasis
Authors: Meyer Hanno S. , Liesche-Starnecker Friederike , Mustafa Mona , Yakushev Igor , Wiestler Benedikt , Meyer Bernhard , Gempt Jens
Published: January 2021

Amino acid positron emission tomography (PET) has been employed in the management of brain metastases. Yet, histopathological correlates of PET findings remain poorly understood. We investigated the relationship of O-(2-[18F]Fluoroethyl)-L-tyrosine ([18F]FET) PET, magnetic resonance imaging (MRI), and histology in brain metastases. Fifteen patients undergoing brain metastasis resection were included prospectively. Using intraoperative navigation, 39 targeted biopsies were obtained from parts of the metastases that were either PET-positive or negative and MRI-positive or negative. Tumor and necrosis content, proliferation index, lymphocyte infiltration, and vascularization were determined histopathologically. [18F]FET PET had higher specificity than MRI (66% vs. 56%) and increased sensitivity for tumor from 73% to 93% when combined with MRI. Tumor content per sample increased with PET uptake (rs = 0.3, p = 0.045), whereas necrosis content decreased (rs = −0.4, p = 0.014). PET-positive samples had more tumor (median: 75%; interquartile range: 10–97%; p = 0.016) than PET-negative samples. The other investigated histological properties were not correlated with [18F]FET PET intensity. Tumors were heterogeneous at the levels of imaging and histology. [18F]FET PET can be a valuable tool in the management of brain metastases. In biopsies, one should aim for PET hotspots to increase the chance for retrieval of samples with high tumor cell concentrations. Multiple biopsies should be performed to account for intra-tumor heterogeneity. PET could be useful for differentiating treatment-related changes (e.g., radiation necrosis) from tumor recurrence.
Pd Nanoparticles-Loaded Vinyl Polymer Gels: Preparation, Structure and Catalysis
Authors: Elbayoumy Elsayed , Wang Yuting , Rahman Jamil , Trombini Claudio , Bando Masayoshi , Song Zhiyi , Diab Mostafa A. , Mohamed Farid S. , Naga Naofumi , Nakano Tamaki
Published: January 2021

Four vinyl polymer gels (VPGs) were synthesized by free radical polymerization of divinylbenzene, ethane-1,2-diyl dimethacrylate, and copolymerization of divinylbenzene with styrene, and ethane-1,2-diyl dimethacrylate with methyl methacrylate, as supports for palladium nanoparticles. VPGs obtained from divinylbenzene and from divinylbenzene with styrene had spherical shapes while those obtained from ethane-1,2-diyl dimethacrylate and from ethane-1,2-diyl dimethacrylate with methyl methacrylate did not have any specific shapes. Pd(OAc)2 was impregnated onto VPGs and reduced to form Pd0 nanoparticles within VPGs. The structures of Pd0-loaded VPGs were analyzed by XRD, TEM, and nitrogen gas adsorption. Pd0-loaded VPGs had nanocrystals of Pd0 within and on the surface of the polymeric supports. Pd0/VPGs efficiently catalyzed the oxidation/disproportionation of benzyl alcohol into benzaldehyde/toluene, where activity and selectivity between benzaldehyde and toluene varied, depending on the structure of VPG and the weight percentage loading of Pd0. The catalysts were stable and Pd leaching to liquid phase did not occur. The catalysts were separated and reused for five times without any significant decrease in the catalytic activity.
An Alternative Enzymatic Route to the Ergogenic Ketone Body Ester (R)-3-Hydroxybutyl (R)-3-Hydroxybutyrate
Authors: Zaccone Ferdinando , Venturi Valentina , Giovannini Pier Paolo , Trapella Claudio , Narducci Marco , Fournier Hugues , Fantinati Anna
Published: January 2021

Recent studies have highlighted the therapeutic and ergogenic potential of the ketone body ester, (R)-3-hydroxybutyl-(R)-3-hydroxybutyrate. In the present work, the enzymatic synthesis of this biological active compound is reported. The (R)-3-hydroxybutyl-(R)-3-hydroxybutyrate has been produced through the transesterification of racemic ethyl 3-hydroxybutyrate with (R)-1,3-butanediol by exploiting the selectivity of Candida antarctica lipase B (CAL-B). The needed (R)-1,3-butanediol was in turn obtained from the kinetic resolution of the racemate achieved by acetylation with vinyl acetate, also in this case, thanks to the enantioselectivity of the CAL-B used as catalyst. Finally, the stereochemical inversion of the unreacted (S) enantiomers of the ethyl 3-hydroxybutyate and 1,3-butanediol accomplished by known procedure allowed to increase the overall yield of the synthetic pathway by incorporating up to 70% of the starting racemic reagents into the final product.
Emerging Energy Harvesting Technology for Electro/Photo-Catalytic Water Splitting Application
Authors: Tang Jianfei , Liu Tianle , Miao Sijia , Cho Yuljae
Published: January 2021

In recent years, we have experienced extreme climate changes due to the global warming, continuously impacting and changing our daily lives. To build a sustainable environment and society, various energy technologies have been developed and introduced. Among them, energy harvesting, converting ambient environmental energy into electrical energy, has emerged as one of the promising technologies for a variety of energy applications. In particular, a photo (electro) catalytic water splitting system, coupled with emerging energy harvesting technology, has demonstrated high device performance, demonstrating its great social impact for the development of the new water splitting system. In this review article, we introduce and discuss in detail the emerging energy-harvesting technology for photo (electro) catalytic water splitting applications. The article includes fundamentals of photocatalytic and electrocatalytic water splitting and water splitting applications coupled with the emerging energy-harvesting technologies using piezoelectric, piezo-phototronic, pyroelectric, triboelectric, and photovoltaic effects. We comprehensively deal with different mechanisms in water splitting processes with respect to the energy harvesting processes and their effect on the water splitting systems. Lastly, new opportunities in energy harvesting-assisted water splitting are introduced together with future research directions that need to be investigated for further development of new types of water splitting systems.
Putting Cells in Motion: Advantages of Endogenous Boosting of BDNF Production
Authors: Brattico Elvira , Bonetti Leonardo , Ferretti Gabriella , Vuust Peter , Matrone Carmela
Published: January 2021

Motor exercise, such as sport or musical activities, helps with a plethora of diseases by modulating brain functions in neocortical and subcortical regions, resulting in behavioural changes related to mood regulation, well-being, memory, and even cognitive preservation in aging and neurodegenerative diseases. Although evidence is accumulating on the systemic neural mechanisms mediating these brain effects, the specific mechanisms by which exercise acts upon the cellular level are still under investigation. This is particularly the case for music training, a much less studied instance of motor exercise than sport. With regards to sport, consistent neurobiological research has focused on the brain-derived neurotrophic factor (BDNF), an essential player in the central nervous system. BDNF stimulates the growth and differentiation of neurons and synapses. It thrives in the hippocampus, the cortex, and the basal forebrain, which are the areas vital for memory, learning, and higher cognitive functions. Animal models and neurocognitive experiments on human athletes converge in demonstrating that physical exercise reliably boosts BDNF levels. In this review, we highlight comparable early findings obtained with animal models and elderly humans exposed to musical stimulation, showing how perceptual exposure to music might affect BDNF release, similar to what has been observed for sport. We subsequently propose a novel hypothesis that relates the neuroplastic changes in the human brains after musical training to genetically- and exercise-driven BDNF levels.
ICU Admission Levels of Endothelial Biomarkers as Predictors of Mortality in Critically Ill COVID-19 Patients
Authors: Vassiliou Alice G. , Keskinidou Chrysi , Jahaj Edison , Gallos Parisis , Dimopoulou Ioanna , Kotanidou Anastasia , Orfanos Stylianos E.
Published: January 2021

Endotheliopathy is suggested to be an important feature of COVID-19 in hospitalized patients. To determine whether endotheliopathy is involved in COVID-19-associated mortality, markers of endothelial damage were assessed in critically ill COVID-19 patients upon intensive care unit (ICU) admission. Thirty-eight critically ill COVID-19 patients were included in this observational study, 10 of whom died in the ICU. Endothelial biomarkers, including soluble (s)E-selectin, sP-selectin, angiopoietin 1 and 2 (Ang-1 and Ang-2, respectively), soluble intercellular adhesion molecule 1 (sICAM-1), vascular endothelial growth factor (VEGF), soluble vascular endothelial (VE)-cadherin, and von Willebrand factor (vWf), were measured upon ICU admission. The ICU cohort was subsequently divided into survivors and non-survivors; Kaplan–Meier analysis was used to explore associations between biomarkers and survival, while receiver operating characteristic (ROC) curves were generated to determine their potential prognostic value. sE-selectin, sP-selectin, Ang-2, and sICAM-1 were significantly elevated in ICU non-survivors compared to survivors, and also associated with a higher mortality probability in the Kaplan–Meier analysis. The prognostic values of sE-selectin, Ang-2, and sICAM-1 from the generated ROC curves were greater than 0.85. Hence, we conclude that in our cohort, ICU non-survivors had higher levels of specific endothelial markers compared to survivors. Elevated levels of these markers upon ICU admission could possibly predict mortality in COVID-19.
P2X7 Variants in Oncogenesis
Authors: Pegoraro Anna , De Marchi Elena , Adinolfi Elena
Published: January 2021

The P2X7 receptor for extracellular ATP is a well-established mediator of tumoral development and progression both in solid cancers and hematological malignancies. The human P2X7 gene is highly polymorphic, and several splice variants of the receptor have been identified in time. P2X7 single-nucleotide polymorphisms (SNPs) have been broadly analyzed by studies relating them to pathologies as different as infectious, inflammatory, nervous, and bone diseases, among which cancer is included. Moreover, in the last years, an increasing number of reports concentrated on P2X7 splice variants’ different roles and their implications in pathological conditions, including oncogenesis. Here, we give an overview of established and recent literature demonstrating a role for human P2X7 gene products in oncological conditions, mainly focusing on current data emerging on P2X7 isoform B and nfP2X7. We explored the role of these and other genetic variants of P2X7 in cancer insurgence, dissemination, and progression, as well as the effect of chemotherapy on isoforms expression. The described literature strongly suggests that P2X7 variants are potential new biomarkers and therapeutical targets in oncological conditions and that their study in carcinogenesis deserves to be further pursued.
Preparation and Characterization of Au/NiPc/Anti-p53/BSA Electrode for Application as a p53 Antigen Sensor
Authors: Chen Yen-Jou , Peng Yu-Ren , Lin Hung-Yu , Hsueh Tsung-Yu , Lai Chao-Sung , Hua Mu-Yi
Published: January 2021

While the tumor suppressor protein p53 regulates the cell cycle to prevent cell damage, it also triggers apoptosis and prevents cancer. These inhibitory functions may disappear once the p53 gene is mutated. Under these circumstances, the detection of p53 protein concentrations can have significant clinical applications. In this study, nickel phthalocyanine (NiPc) was coated on a gold electrode to produce a modified Au/NiPc electrode. p53 antibodies were bonded to the Au/NiPc electrode by the Ni+2 ion in NiPc, which can be self-assembled with the imidazole group of the p53 protein. The Au/NiPc/anti-p53 electrode was subsequently dripped with a buffer solution of bovine serum albumin (BSA) to form the Au/NiPc/anti-p53/BSA electrode, which was used for the detection of p53 antigen under 10 mM potassium ferricyanide/potassium ferrocyanide (K3Fe(CN)6/K4Fe(CN)6) solution by cyclic voltammetry and differential pulse voltammetry analyses. The linear detection range and the sensitivity for the p53 antigen were 0.1–500 pg/mL and 60.65 μA/Log (pg/mL)-cm2, respectively, with a detection time of 90–150 s. In addition, Au/NiPc/anti-p53 (100 ng/mL)/BSA electrodes were tested for specificity using glucose, bovine serum albumin, histidine, ascorbic acid, uric acid, prostate-specific antigen, human serum albumin, and human immunoglobulin G. All p-values were <0.0005, indicating an outstanding specificity.
Impact on Renewable Design Requirements of Net-Zero Carbon Buildings under Potential Future Climate Scenarios
Authors: Kim Dongsu , Cho Heejin , Mago Pedro J. , Yoon Jongho , Lee Hyomun
Published: January 2021

This paper presents an analysis to foresee renewable design requirement changes of net- zero carbon buildings (NZCBs) under different scenarios of potential future climate scenarios in the U.S. Northeast and Midwest regions. A climate change model is developed in this study using the Gaussian random distribution method with monthly temperature changes over the whole Northeast and Midwest regions, which are predicted based on a high greenhouse gas (GHG) emission scenario (i.e., the representative concentration pathways (RCP) 8.5). To reflect the adoption of NZCBs potential in future, this study also considers two representative future climate scenarios in the 2050s and 2080s of climate change years in the U.S. Northeast and Midwest regions. An office prototype building model integrates with an on-site photovoltaics (PV) power generation system to evaluate NZCB performance under the climate change scenarios with an assumption of a net-metering electricity purchase agreement. Appropriate capacities of the on-site PV system needed to reach NZCB balances are determined based on the building energy consumption impacted by the simulated climate scenarios. Results from this study demonstrated the emission by electricity consumption increases as moving toward the future scenarios of up to about 25 tons of CO2-eq (i.e., about 14% of the total CO2-eq produced by the electricity energy source) and the PV installation capacity to offset the emission account for the electricity consumption increases significantly up to about 40 kWp (i.e., up to more than 10% of total PV installation capacities) as the different climate scenarios are applied. It is concluded that the cooling energy consumption of office building models would significantly impact GHG emission as future climate scenarios are considered. Consequently, designers of NZCBs should consider high performance cooling energy systems in their designs to reduce the renewable energy generation system capacity to achieve net-zero carbon emission goals.
Electrodeposition and Characterization of Lanthanide Elements on Carbon Sheets
Authors: Joo Min Hee , Park So Jeong , Hong Sung-Min , Rhee Choong Kyun , Kim Dongsoo , Sohn Youngku
Published: January 2021

Electrochemical coating and recovery by electrodeposition have been invaluably employed for facial thin film fabrication and the recycling of used materials. Herein, we have established a full data set of lanthanide (Ln: La, Ce, Pr, Nd, Sm, Eu, Gd, Tb, Dy, Ho, Er, Tm, and Yb) elements electrodeposited on carbon sheets. Cyclic voltammetry was performed for 10 mM Ln(III) ions in a 0.1 M NaClO4 electrolyte over a carbon sheet between +0.5 V and −1.7 V (vs. Ag/AgCl). Amperometry was performed at a given potential to electrodeposit the Ln element on the carbon sheet. Their physicochemical properties were fully investigated by scanning electron microscopy, Fourier-transform infrared spectroscopy, energy-dispersive X-ray spectroscopy, and X-ray photoelectron spectroscopy. The newly established full data set for Ln(III) ions over carbon electrodes provides useful fundamental information for the development of coating and recovery methods of Ln elements.