bluuebunny/crossref_metadata_2025 huggingface dataset:
Coastal sea level anomalies and associated trends from Jason satellite altimetry over 2002–2018
Authors:   The Climate Change Initiative Coastal Sea Level Team, Benveniste Jérôme , Birol Florence , Calafat Francisco , Cazenave Anny , Dieng Habib , Gouzenes Yvan , Legeais Jean François , Léger Fabien , Niño Fernando , Passaro Marcello , Schwatke Christian , Shaw Andrew
Published: October 2020

Climate-related sea level changes in the world coastal zones result from the superposition of the global mean rise due to ocean warming and land ice melt, regional changes caused by non-uniform ocean thermal expansion and salinity changes, and by the solid Earth response to current water mass redistribution and associated gravity change, plus small-scale coastal processes (e.g., shelf currents, wind & waves changes, fresh water input from rivers, etc.). So far, satellite altimetry has provided global gridded sea level time series up to 10–15 km to the coast only, preventing estimation of sea level changes very close to the coast. Here we present a 16-year-long (June 2002 to May 2018), high-resolution (20-Hz), along-track sea level dataset at monthly interval, together with associated sea level trends, at 429 coastal sites in six regions (Northeast Atlantic, Mediterranean Sea, Western Africa, North Indian Ocean, Southeast Asia and Australia). This new coastal sea level product is based on complete reprocessing of raw radar altimetry waveforms from the Jason-1, Jason-2 and Jason-3 missions.
CoVidAffect, real-time monitoring of mood variations following the COVID-19 outbreak in Spain
Authors: Bailon Carlos , Goicoechea Carmen , Banos Oresti , Damas Miguel , Pomares Hector , Correa Angel , Sanabria Daniel , Perakakis Pandelis
Published: October 2020

The COVID-19 outbreak and the ensuing confinement measures are expected to bear a significant psychological impact on the affected populations. To date, all available studies designed to investigate the psychological effects of this unprecedented global crisis are based on cross-sectional surveys that do not capture emotional variations over time. Here, we present the data from CoVidAffect, a nationwide citizen science project aimed to provide longitudinal data of mood changes following the COVID-19 outbreak in the spanish territory. Spain is among the most affected countries by the pandemic, with one of the most restrictive and prolonged lockdowns worldwide. The project also collected a baseline of demographic and socioeconomic data. These data can be further analyzed to quantify emotional responses to specific measures and policies, and to understand the effect of context variables on psychological resilience. Importantly, to our knowledge this is the first dataset that offers the opportunity to study the behavior of emotion dynamics in a prolonged lockdown situation.
Preparation, characterization and therapeutic properties of gum arabic-stabilized gallic acid nanoparticles
Authors: Hassani Abdelkader , Azarian Mohammad Mahdi Sabaghpour , Ibrahim Wisam Nabeel , Hussain Siti Aslina
Published: October 2020

Gallic acid (GA) is a natural phenolic compound with therapeutic effects that are often challenged by its rapid metabolism and clearance. Therefore,  GA was encapsulated using gum arabic into nanoparticles to increase its bioavailability. The formulated nanoparticles (GANPs) were characterized for physicochemical properties and size and were then evaluated for antioxidant and antihypertensive effects using various established in vitro assays, including 1,1-diphenyl-2-picrylhydrazyl (DPPH), nitric oxide scavenging (NO), β-carotene bleaching and angiotensin-converting enzyme (ACE) inhibitory assays. The GANPs were further evaluated for the in vitro cytotoxicity, cell uptake and cell migration in four types of human cancer cell lines including (MCF-7, MDA-MB231) breast adenocarcinoma, HepG2 hepatocellular cancer, HT-29 colorectal adenocarcinoma, and MCF-10A breast epithelial cell lines. The GANPs demonstrated potent antioxidant effects and have shown promising anti-cancer properties in a dose-dependent manner with a predilection toward HepG2 and MCF7 cancer cells. The uptake of GANPs was successful in the majority of cancer cells with a propensity to accumulate in the nuclear region of the cells. The HepG2 and MCF7 cancer cells also had a significantly higher percentage of apoptosis and were more sensitive to gallic acid nanoparticle treatment in the cell migration assay. This study is the first to confirm the synergistic effects of gum arabic in the encapsulation of gallic acid by increasing the selectivity towards cancer cells and enhancing  the antioxidant properties. The formulated nanoparticles also had remarkably low toxicity in normal cells. Based on these findings, GANPs may have promising therapeutic applications towards the development of more effective treatments with a probable targeting precision in cancer cells.
Improving gait classification in horses by using inertial measurement unit (IMU) generated data and machine learning
Authors: Serra Bragança F. M. , Broomé S. , Rhodin M. , Björnsdóttir S. , Gunnarsson V. , Voskamp J. P. , Persson-Sjodin E. , Back W. , Lindgren G. , Novoa-Bravo M. , Gmel A. I. , Roepstorff C. , van der Zwaag B. J. , Van Weeren P. R. , Hernlund E.
Published: October 2020

For centuries humans have been fascinated by the natural beauty of horses in motion and their different gaits. Gait classification (GC) is commonly performed through visual assessment and reliable, automated methods for real-time objective GC in horses are warranted. In this study, we used a full body network of wireless, high sampling-rate sensors combined with machine learning to fully automatically classify gait. Using data from 120 horses of four different domestic breeds, equipped with seven motion sensors, we included 7576 strides from eight different gaits. GC was trained using several machine-learning approaches, both from feature-extracted data and from raw sensor data. Our best GC model achieved 97% accuracy. Our technique facilitated accurate, GC that enables in-depth biomechanical studies and allows for highly accurate phenotyping of gait for genetic research and breeding. Our approach lends itself for potential use in other quadrupedal species without the need for developing gait/animal specific algorithms.
Habitat complexity and lifetime predation risk influence mesopredator survival in a multi-predator system
Authors: Gigliotti Laura C. , Slotow Rob , Hunter Luke T. B. , Fattebert Julien , Sholto-Douglas Craig , Jachowski David S.
Published: October 2020

Variability in habitat selection can lead to differences in fitness; however limited research exists on how habitat selection of mid-ranking predators can influence population-level processes in multi-predator systems. For mid-ranking, or mesopredators, differences in habitat use might have strong demographic effects because mesopredators need to simultaneously avoid apex predators and acquire prey. We studied spatially-explicit survival of cheetahs (Acinonyx jubatus) in the Mun-Ya-Wana Conservancy, South Africa, to test hypotheses related to spatial influences of predation risk, prey availability, and vegetation complexity, on mesopredator survival. For each monitored cheetah, we estimated lion encounter risk, prey density, and vegetation complexity within their home range, on short-term (seasonal) and long-term (lifetime) scales and estimated survival based on these covariates. Survival was lowest for adult cheetahs and cubs in areas with high vegetation complexity on both seasonal and lifetime scales. Additionally, cub survival was negatively related to the long-term risk of encountering a lion. We suggest that complex habitats are only beneficial to mesopredators when they are able to effectively find and hunt prey, and show that spatial drivers of survival for mesopredators can vary temporally. Collectively, our research illustrates that individual variation in mesopredator habitat use can scale-up and have population-level effects.
How drain flies manage to almost never get washed away
Authors: Speirs Nathan B. , Mahadik Gauri A. , Thoroddsen Sigurdur T.
Published: October 2020

Drain flies, Psychodidae spp. (Order Diptera, Family Psychodidae), commonly reside in our homes, annoying us in our bathrooms, kitchens, and laundry rooms. They like to stay near drains where they lay their eggs and feed on microorganisms and liquid carbohydrates found in the slime that builds up over time. Though they generally behave very sedately, they react quite quickly when threatened with water. A squirt from the sink induces them to fly away, seemingly unaffected, and flushing the toilet with flies inside does not necessarily whisk them down. We find that drain flies’ remarkable ability to evade such potentially lethal threats does not stem primarily from an evolved behavioral response, but rather from a unique hair covering with a hierarchical roughness. This covering, that has never been previously explored, imparts superhydrophobicity against large droplets and pools and antiwetting properties against micron-sized droplets and condensation. We examine how this hair covering equips them to take advantage of the relevant fluid dynamics and flee water threats in domestic and natural environments including: millimetric-sized droplets, mist, waves, and pools of water. Our findings elucidate drain flies’ astounding ability to cope with a wide range of water threats and almost never get washed down the drain.
Targeting interleukin-17 receptor B enhances gemcitabine sensitivity through downregulation of mucins in pancreatic cancer
Authors: Tsai Lung-Hung , Hsu Kai-Wen , Chiang Cheng-Ming , Yang Hsiu-Ju , Liu Yu-Huei , Yang Shun-Fa , Peng Pei-Hua , Cheng Wei-Chung , Wu Heng-Hsiung
Published: October 2020

Pancreatic cancer is the fourth leading cause of death worldwide due to its poorest prognoses with a 7% 5-year survival rate. Eighty percent of pancreatic cancer patients relapse after chemotherapy and develop early metastasis and drug resistance. Resistance to nucleoside analog gemcitabine frequently used in first-line therapy is an urgent issue in pancreatic cancer treatment. Expression of mucin (MUC) glycoproteins has been shown to enhance chemoresistance via increased cell stemness. Here we show interlukine-17 receptor B (IL-17RB) expression is positively correlated with MUC1 and MUC4 expression in pancreatic cancer cells and tumor tissue. Moreover, IL-17RB transcriptionally up-regulates expression of MUC1 and MUC4 to enhance cancer stem-like properties and resistance to gemcitabine. These results suggest IL-17RB can be a potential target for pancreatic cancer therapy. Indeed, treatment with IL-17RB-neutralizing antibody has a synergistic effect in combination with gemcitabine for killing pancreatic cancer cells. Altogether, these findings provide feasible applications for IL-17RB-targeting therapy in pancreatic cancer treatment.
Importance of cholesterol-rich microdomains in the regulation of Nox isoforms and redox signaling in human vascular smooth muscle cells
Authors: Anagnostopoulou Aikaterini , Camargo Livia L. , Rodrigues Daniel , Montezano Augusto C. , Touyz Rhian M.
Published: October 2020

Vascular smooth muscle cell (VSMC) function is regulated by Nox-derived reactive oxygen species (ROS) and redox-dependent signaling in discrete cellular compartments. Whether cholesterol-rich microdomains (lipid rafts/caveolae) are involved in these processes is unclear. Here we examined the sub-cellular compartmentalization of Nox isoforms in lipid rafts/caveolae and assessed the role of these microdomains in VSMC ROS production and pro-contractile and growth signaling. Intact small arteries and primary VSMCs from humans were studied. Vessels from Cav-1−/− mice were used to test proof of concept. Human VSMCs express Nox1, Nox4, Nox5 and Cav-1. Cell fractionation studies showed that Nox1 and Nox5 but not Nox4, localize in cholesterol-rich fractions in VSMCs. Angiotensin II (Ang II) stimulation induced trafficking into and out of lipid rafts/caveolae for Nox1 and Nox5 respectively. Co-immunoprecipitation studies showed interactions between Cav-1/Nox1 but not Cav-1/Nox5. Lipid raft/caveolae disruptors (methyl-β-cyclodextrin (MCD) and Nystatin) and Ang II stimulation variably increased O2− generation and phosphorylation of MLC20, Ezrin-Radixin-Moesin (ERM) and p53 but not ERK1/2, effects recapitulated in Cav-1 silenced (siRNA) VSMCs. Nox inhibition prevented Ang II-induced phosphorylation of signaling molecules, specifically, ERK1/2 phosphorylation was attenuated by mellitin (Nox5 inhibitor) and Nox5 siRNA, while p53 phosphorylation was inhibited by NoxA1ds (Nox1 inhibitor). Ang II increased oxidation of DJ1, dual anti-oxidant and signaling molecule, through lipid raft/caveolae-dependent processes. Vessels from Cav-1−/− mice exhibited increased O2− generation and phosphorylation of ERM. We identify an important role for lipid rafts/caveolae that act as signaling platforms for Nox1 and Nox5 but not Nox4, in human VSMCs. Disruption of these microdomains promotes oxidative stress and Nox isoform-specific redox signalling important in vascular dysfunction associated with cardiovascular diseases.
Targeting c-Myc with a novel Peptide Nuclear Delivery Device
Authors: Ting Trinda Anne , Chaumet Alexandre , Bard Frederic Andre
Published: October 2020

Biologics such as peptides and antibodies are a well-established class of therapeutics. However, their intracellular delivery remains problematic. In particular, methods to efficiently inhibit intra-nuclear targets are lacking. We previously described that Pseudomonas Exotoxin A reaches the nucleoplasm via the endosomes-to-nucleus trafficking pathway. Here, we show that a non-toxic truncated form of PE can be coupled to peptides and efficiently reach the nucleoplasm. It can be used as a Peptide Nuclear Delivery Device (PNDD) to deliver polypeptidic cargos as large as Glutathione- S-transferase (GST) to the nucleus. PNDD1 is a fusion of PNDD to the c-myc inhibitor peptide H1. PNDD1 is able to inhibit c-Myc dependent transcription at nanomolar concentration. In contrast, H1 fused to various cell-penetrating peptides are active only in the micromolar range. PNDD1 attenuates cell proliferation and induces cell death in various tumor cell lines. In particular, several patient-derived Diffuse Large B-Cell Lymphomas cell lines die after exposure to PNDD1, while normal B-cells survive. Altogether, our data indicate that PNDD is a powerful tool to bring active cargo to the nucleus and PNDD1 could be the basis of a new therapy against lymphoma.
Assessing regulatory features of the current transcriptional network of Saccharomyces cerevisiae
Authors: Monteiro Pedro T. , Pedreira Tiago , Galocha Monica , Teixeira Miguel C. , Chaouiya Claudine
Published: October 2020

The capacity of living cells to adapt to different environmental, sometimes adverse, conditions is achieved through differential gene expression, which in turn is controlled by a highly complex transcriptional network. We recovered the full network of transcriptional regulatory associations currently known for Saccharomyces cerevisiae, as gathered in the latest release of the YEASTRACT database. We assessed topological features of this network filtered by the kind of supporting evidence and of previously published networks. It appears that in-degree distribution, as well as motif enrichment evolve as the yeast transcriptional network is being completed. Overall, our analyses challenged some results previously published and confirmed others. These analyses further pointed towards the paucity of experimental evidence to support theories and, more generally, towards the partial knowledge of the complete network.
Association of multiple sclerosis with vitiligo: a systematic review and meta-analysis
Authors: Shen Meng-Han , Ng Chau Yee , Chang Kuo-Hsuan , Chi Ching-Chi
Published: October 2020

Polyautoimmunity implicates that some autoimmune diseases share common etiopathogenesis. Some studies have reported an association between multiple sclerosis (MS) and vitiligo; meanwhile, other studies have failed to confirm this association. We performed a systemic review and meta-analysis to examine the association of MS with vitiligo. We searched the MEDLINE and Embase databases on March 8, 2020 for relevant case–control, cross-sectional, and cohort studies. The Newcastle–Ottawa Scale was used to evaluate the risk of bias of the included studies. Where applicable, we performed a meta-analysis to calculate the pooled odds ratio (OR) for case–control/cross-sectional studies and risk ratio for cohort studies with 95% confidence interval (CI). Our search identified 285 citations after removing duplicates. Six case–control studies with 12,930 study subjects met our inclusion criteria. Our meta-analysis found no significant association of MS with prevalent vitiligo (pooled OR 1.33; 95% CI 0.80‒2.22). Analysis of the pooled data failed to display any increase of prevalent vitiligo in MS patients compared with controls. Ethnic and genetic factors may play an important role for sporadically observed associations between MS and vitiligo. Future studies of this association should therefore consider stratification by ethnic or genetic factors.
Occurrence and genotypes of Cryptosporidium spp., Giardia duodenalis, and Blastocystis sp. in household, shelter, breeding, and pet market dogs in Guangzhou, southern China
Authors: Liao Shenquan , Lin Xuhui , Sun Yongxiang , Qi Nanshan , Lv Minna , Wu Caiyan , Li Juan , Hu Junjing , Yu Linzeng , Cai Haiming , Xiao Wenwan , Sun Mingfei , Li Guoqing
Published: October 2020

Cryptosporidiumspp., Giardia duodenalis, andBlastocystissp. are common intestinal protozoans that infect humans and animals worldwide. A survey that assessed the prevalence, molecular characteristics, and zoonotic potential of these pathogens was conducted on a variety of dogs in Guangzhou, southern China. A total of 651 canine stool samples from household (n = 199), shelter (n = 149), breeding (n = 237), and pet market dogs (n = 66) were collected from eight districts in Guangzhou.Cryptosporidiumspp., Giardia duodenalis, andBlastocystissp. were detected by PCR amplification of theSSUrRNA gene.Giardia duodenalis-positive specimens were further assigned into assemblages using the glutamate dehydrogenase gene. Cryptosporidiumspp.,G. duodenalis, andBlastocystissp. were found in 21 (3.2%), 20 (3.1%), and 35 (5.4%) samples, respectively. The overall prevalence of shelter dogs (40.28%, 60/149) was significantly higher than that of household (3.0%, 6/199), breeding (2.1%, 5/237), and pet market dogs (7.5%, 5/66) (χ2 = 154.72, df = 3,P < 0.001). Deworming in the past 12 months had a strong protective effect on the risk of contracting parasite infections (P < 0.001). No significant differences were detected between age or sex groups (P > 0.05). Dog-specificC. canis(n = 19) and zoonoticC. parvum(n = 2) were the only twoCryptosporidiumspecies. Sequence analysis revealed the presence of threeG. duodenalisassemblages: dog-specific assemblages D (n = 14) and C (n = 5), and cat-specific F (n = 1). ZoonoticBlastocystisST3 (n = 28) was the dominant subtype, followed by ST1 (n = 6) and ST10 (n = 1). To our knowledge, this is the first large-scale investigation on the occurrence and molecular characteristics ofBlastocystissp. in dogs in China. Our results indicated that the dogs seemed to play a negligible role as reservoirs forCryptosporidiumspp. andG. duodenalistransmission to humans, but they are potential novel suitable hosts ofBlastocystissp. A strict sentinel surveillance system of dogs should be established to minimise the zoonotic risk of spreading blastocystosis among humans and dogs.
Compostable, fully biobased foams using PLA and micro cellulose for zero energy buildings
Authors: Oluwabunmi Kayode , D’Souza Nandika Anne , Zhao Weihuan , Choi Tae-Youl , Theyson Thomas
Published: October 2020

Ecological, health and environmental concerns are driving the need for bio-resourced foams for the building industry. In this paper, we examine foams made from polylactic acid (PLA) and micro cellulose fibrils (MCF). To ensure no volatile organic compounds in the foam, supercritical CO2 (sc-CO2) physical foaming of melt mixed systems was conducted. Mechanical and thermal conductivity properties were determined and applied to a net zero energy model house. The results showed that MCF had a concentration dependent impact on the foams. First structurally, the presence of MCF led to an initial increase followed by a decrease of open porosity, higher bulk density, lower expansion ratios and cell size. Differential Scanning Calorimetry and Scanning Electron Microscopy revealed that MCF decreased the glass transition of PLA allowing for a decrease in cell wall thickness when MCF was added. The mechanical performance initially increased with MCF and then decreased. This trend was mimicked by thermal insulation which initially improved. Biodegradation tests showed that the presence of cellulose in PLA improved the compostability of the foams. A maximum comparative mineralization of 95% was obtained for the PLA foam with 3 wt.% MCF when expressed as a fractional percentage of the pure cellulose reference. Energy simulations run on a model house showed that relative to an insulation of polyurethane, the bio-resourced foams led to no more than a 12% increase in heating and cooling. The energy efficiency of the foams was best at low MCF fractions.
Unsupervised geochemical classification and automatic 3D mapping of the Bolshetroitskoe high-grade iron ore deposit (Belgorod Region, Russia)
Authors: Kalashnikov Andrey O. , Nikulin Ivan I. , Stepenshchikov Dmitry G.
Published: October 2020

We stated and solved three successive problems concerning automatization of geological mapping using the case of the Bolshetroitskoe high-grade iron ore deposit in weathered crust of Banded Iron Formation (Kursk Magnetic Anomaly, Belgorod Region, Russia). (1) Selecting a classification (clustering) method of geochemical data without reference sampling, i.e., solution of an “unsupervised clustering task”. We developed 5 rock classifications based on different principles, i.e., classification by visual description, by distribution of economic component (Fe2O3), by cluster analysis of raw data and centered log-ratio transformation of the raw data, and by artificial neural network (Kohonnen’s self-organized map). (2) Non-parametric comparison of quality of the classifications and revealing the best one. (3) Automatic 3D geological mapping in accordance with the best classification. The developed approach of automatic 3D geological mapping seems to be rather simple and plausible.
Expamers: a new technology to control T cell activation
Authors: Poltorak Mateusz P. , Graef Patricia , Tschulik Claudia , Wagner Michaela , Cletiu Vlad , Dreher Stefan , Borjan Bojana , Fraessle Simon P. , Effenberger Manuel , Turk Martin , Busch Dirk H. , Plitzko Juergen , Kugler David G. , Ragan Seamus , Schmidt Thomas , Stemberger Christian , Germeroth Lothar
Published: October 2020

T cell activation is a cornerstone in manufacturing of T cell-based therapies, and precise control over T cell activation is important in the development of the next generation T-cell based therapeutics. This need cannot be fulfilled by currently available methods for T cell stimulation, in particular not in a time dependent manner. Here, we describe a modular activation reagent called Expamers, which addresses these limitations. Expamers are versatile stimuli that are intended for research and clinical use. They are readily soluble and can be rapidly bound and removed from the cell surface, allowing nearly instantaneous initiation and termination of activation signal, respectively. Hence, Expamers enable precise regulation of T cell stimulation duration and provide promise of control over T cell profiles in future products. Expamers can be easily adopted to different T cell production formats and have the potential to increase efficacy of T cell immunotherapeutics.
Expression of SARS-CoV-2 entry factors in lung epithelial stem cells and its potential implications for COVID-19
Authors: Valyaeva Anna A. , Zharikova Anastasia A. , Kasianov Artem S. , Vassetzky Yegor S. , Sheval Eugene V.
Published: October 2020

SARS-CoV-2 can infiltrate the lower respiratory tract, resulting in severe respiratory failure and a high death rate. Normally, the airway and alveolar epithelium can be rapidly reconstituted by multipotent stem cells after episodes of infection. Here, we analyzed published RNA-seq datasets and demonstrated that cells of four different lung epithelial stem cell types express SARS-CoV-2 entry factors, including Ace2. Thus, stem cells can be potentially infected by SARS-CoV-2, which may lead to defects in regeneration capacity partially accounting for the severity of SARS-CoV-2 infection and its consequences.
Presence of ice-nucleating Pseudomonas on wheat leaves promotes Septoria tritici blotch disease (Zymoseptoria tritici) via a mutually beneficial interaction
Authors: Fones Helen N.
Published: October 2020

Zymoseptoria tritici causes Septoria tritici blotch (STB) of wheat, an economically important disease causing yield losses of up to 10% despite the use of fungicides and resistant cultivars. Z. tritici infection is symptomless for around 10 days, during which time the fungus grows randomly across the leaf surface prior to entry through stomata. Wounded leaves show faster, more extensive STB, suggesting that wounds facilitate fungal entry. Wheat leaves also host epiphytic bacteria; these include ice-nucleating (INA+) bacteria, which induce frost damage at warmer temperatures than it otherwise occurs. Here, STB is shown to be more rapid and severe when wheat is exposed to both INA+ bacteria and sub-zero temperatures. This suggests that ice-nucleation-induced wounding of the wheat leaf provides additional openings for fungal entry. INA+ bacterial populations are shown to benefit from the presence of Z. tritici, indicating that this microbial interaction is mutualistic. Finally, control of INA+ bacteria is shown to reduce STB.
Neonatal monocytes demonstrate impaired homeostatic extravasation into a microphysiological human vascular model
Authors: Sanchez-Schmitz Guzman , Morrocchi Elena , Cooney Mitchell , Soni Dheeraj , Khatun Rahima , Palma Paolo , Dowling David J. , Levy Ofer
Published: October 2020

Infections are most frequent at the extremes of life, especially among newborns, reflecting age-specific differences in immunity. Monocytes maintain tissue-homeostasis and defence-readiness by escaping circulation in the absence of inflammation to become tissue-resident antigen presenting cells in vivo. Despite equivalent circulating levels, neonates demonstrate lower presence of monocytes inside peripheral tissues as compared to adults. To study the ability of monocytes to undergo autonomous transendothelial extravasation under biologically accurate circumstances we engineered a three-dimensional human vascular-interstitial model including collagen, fibronectin, primary endothelial cells and autologous untreated plasma. This microphysiological tissue construct enabled age-specific autonomous extravasation of monocytes through a confluent human endothelium in the absence of exogenous chemokines and activation. Both CD16− and CD16+ newborn monocytes demonstrated lower adherence and extravasation as compared to adults. In contrast, pre-activated tissue constructs were colonized by newborn monocytes at the same frequency than adult monocytes, suggesting that neonatal monocytes are capable of colonizing inflamed tissues. The presence of autologous plasma neither improved newborn homeostatic extravasation nor shaped age-specific differences in endothelial cytokines that could account for this impairment. Newborn monocytes demonstrated significantly lower surface expression of CD31 and CD11b, and mechanistic experiments using blocking antibodies confirmed a functional role for CD31 and CD54 in neonatal homeostatic extravasation. Our data suggests that newborn monocytes are intrinsically impaired in extravasation through quiescent endothelia, a phenomenon that could contribute to the divergent immune responsiveness to vaccines and susceptibility to infection observed during early life.
Passive acoustic listening stations (PALS) show rapid onset of ecological effects of harmful algal blooms in real time
Authors: Rycyk Athena M. , Tyson Moore Reny B. , Wells Randall S. , McHugh Katherine A. , Berens McCabe Elizabeth J. , Mann David A.
Published: October 2020

Monitoring ecological changes in marine ecosystems is expensive and time-consuming. Passive acoustic methods provide continuous monitoring of soniferous species, are relatively inexpensive, and can be integrated into a larger network to provide enhanced spatial and temporal coverage of ecological events. We demonstrate how these methods can be used to detect changes in fish populations in response to a Karenia brevis red tide harmful algal bloom by examining sound spectrum levels recorded by two land-based passive acoustic listening stations (PALS) deployed in Sarasota Bay, Florida, before and during a red tide event. Significant and temporally persistent decreases in sound spectrum levels were recorded in real time at both PALS in four frequency bands spanning 0.172–20 kHz after K. brevis cells were opportunistically sampled near the stations. The decrease in sound spectrum levels and increase in K. brevis cell concentrations also coincided with decreased catch per unit effort (CPUE) and species density per unit effort (SDPUE) data for non-clupeid fish and soniferous fish species, as well as increased reports of marine mammal mortalities in the region. These findings demonstrate how PALS can detect and report in real time ecological changes from episodic disturbances, such as harmful algal blooms.
Alterations in the autonomic nerve activities of prenatal autism model mice treated with valproic acid at different developmental stages
Authors: Kasahara Yoshiyuki , Yoshida Chihiro , Nakanishi Kana , Fukase Miyabi , Suzuki Arisa , Kimura Yoshitaka
Published: October 2020

Autism spectrum disorder (ASD) is characterized by impairment of social communication, repetitive behavior and restrictive interest. The risk of ASD is strongly associated with the prenatal period; for instance, the administration of valproic acid (VPA) to pregnant mothers increases risk of ASD in the child. Patients with ASD often exhibit an alteration in the autonomic nervous system. In this study, we assessed the autonomic nervous activity at each prenatal developmental stage of model mice of ASD treated with VPA, to clarify the relationship between timing of exposure and ASD symptoms. The assessment of the autonomic nervous activity was performed based on the analysis of electrocardiography data collected from fetal and adult mice. Interestingly, VPA model mouse fetuses exhibited a significantly lower activity of the sympathetic nervous system. In contrast, sympathetic nervous activity at P0 was significantly higher. In adult VPA model mice, the parasympathetic activity of female VPA mice was suppressed. Moreover, female VPA mice showed reduced the parasympathetic activity after exposure to restraint stress. These results suggest that the autonomic nervous activity of VPA model mice was altered from the fetal stage, and that the assessment of autonomic nervous activities at an early developmental stage could be useful for the understanding of ASD.
Formation of spherical Sn particles by reducing SnO2 film in floating wire-assisted H2/Ar plasma at atmospheric pressure
Authors: Nguyen Thi-Thuy-Nga , Sasaki Minoru , Tsutsumi Takayoshi , Ishikawa Kenji , Hori Masaru
Published: October 2020

A green method to synthesize spherical Sn particles by reducing SnO2film in atmospheric-pressure H2/Ar plasma at low temperatures for various applications is presented. The floating wire-assisted remotely-generated plasma with a mixture of 0.05% H2/Ar gas formed spherical metallic Sn particles by reducing a SnO2layer on glass substrate. During the reduction process, H radical density was measured by using vacuum ultraviolet absorption spectroscopy, and plasma properties including electron density and gas temperature were diagnosed by optical emission spectroscopy. The inductively coupled generated plasma with a high electron density of 1014 cm−3, a hydrogen atom density of 1014 cm−3, and a gas temperature of 940 K was obtained at a remote region distance of 150 mm where the SnO2/glass substrate was placed for plasma treatment. The process has been modeled on the spherical Sn formation based on the reduction of SnO2films using H radicals. Depending on the treatment condition, the total reduction area, where spherical Sn particles formed, was enlarged and could reach 300 mm2after 2 min. The substrate temperature affected the expansion rate of the total reduction area and the growth of the Sn spheres.
Accumulated ambient air pollution and colon cancer incidence in Thailand
Authors: Jenwitheesuk Kriangsak , Peansukwech Udomlack , Jenwitheesuk Kamonwan
Published: October 2020

This research examined the relationship between colon cancer risks and pollution in various areas of Thailand, using satellites to gather quantities of aerosols in the atmosphere. Bayesian hierarchical spatio-temporal model and the Poisson log-linear model were used to examine the incidence rates of colon cancer standardized by national references; from the database of the National Health Security Office, Ministry of Public Health of Thailand and NASA’s database from aerosol diagnostics model. Modern-Era Retrospective Analysis for Research and Applications, Version 2 (MERRA-2) was used to explore disease-gender-specific spatio-temporal patterns of colon cancer incidences and accumulated air pollution-related cancers in Thailand between 2010 and 2016. A total of 59,605 patients were selected for the study. Due to concerns regarding statistical reliability between aerosol diagnostics model and colon cancer incidences, the posterior probabilities of risk appeared the most in dust PM2.5. It could be interpreted as relative risk in every increase of 10 μg/m3 in black carbon, organic carbon, and dust-PM2.5 levels were associated respectively with an increase of 4%, 4%, and 15% in the risks of colon cancer. A significant increase in the incidence of colon cancer with accumulated ambient air quality raised concerns regarding the prevention of air pollution. This study utilized data based on the incidences of colon cancer; the country’s database and linked cancer data to pollution. According to the database from NASA’s technology, this research has never been conducted in Thailand.
The crucial choice of reference genes: identification of miR-191-5p for normalization of miRNAs expression in bone marrow mesenchymal stromal cell and HS27a/HS5 cell lines
Authors: Costé É. , Rouleux-Bonnin F.
Published: October 2020

Bone marrow mesenchymal stromal cells (BM-MSCs) have a critical role in tissue regeneration and in the hematopoietic niche due to their differentiation and self-renewal capacities. These mechanisms are finely tuned partly by small non-coding microRNA implicated in post-transcriptional regulation. The easiest way to quantify them is RT-qPCR followed by normalization on validated reference genes (RGs). This study identified appropriate RG for normalization of miRNA expression in BM-MSCs and HS27a and HS5 cell lines in various conditions including normoxia, hypoxia, co-culture, as model for the hematopoietic niche and after induced differentiation as model for regenerative medicine. Six candidates, namely miR-16-5p, miR-34b-3p, miR-103a-3p, miR-191-5p, let-7a-5p and RNU6A were selected and their expression verified by RT-qPCR. Next, a ranking on stability of the RG candidates were performed with two algorithms geNorm and RefFinder and the optimal number of RGs needed to normalize was determined. Our results indicate miR-191-5p as the most stable miRNA in all conditions but also that RNU6a, usually used as RG is the less stable gene. This study demonstrates the interest of rigorously evaluating candidate miRNAs as reference genes and the importance of the normalization process to study the expression of miRNAs in BM-MSCs or derived cell lines.
A digital PCR system based on the thermal cycled chip with multi helix winding capillary
Authors: Li Bin , Li Yuanming , Jiang Yangyang , Manz Andreas , Wu Wenming
Published: October 2020

This paper presents a digital PCR system based on a novel thermal cycled chip, which wraps microchannels on a trapezoidal structure made of polydimethylsiloxane (PDMS) in a multi-helix manner for the first time. It is found that compared to the single helix chip commonly used in previous reports, this kind of novel multi-helix chip can make the surface temperature in the renaturation zone more uniform, and even in the case of rapid fluid flow, it can improve the efficiency of the polymerase chain reaction. What’s more, the winding method of multi helix (such as double helix, six helix and eight helix) can obtain better temperature uniformity than the winding of odd helix (such as single helix and three helix). As a proof of concept, the temperature-optimized double-helical chip structure is applied to continuous-flow digital PCR and there is no need to add any surfactant to both the oil phase and reagent. In addition, we successfully analyzed the fluorescence signal of continuous-flow digital PCR by using CMOS camera. Finally, this method is applied for the absolute quantification of the clinical serum sample infected by HBV. The accuracy of the test results has been confirmed by commercial instruments.
Laurinterol from Laurencia johnstonii eliminates Naegleria fowleri triggering PCD by inhibition of ATPases
Authors: Arberas-Jiménez Iñigo , García-Davis Sara , Rizo-Liendo Aitor , Sifaoui Ines , Reyes-Batlle María , Chiboub Olfa , Rodríguez-Expósito Rubén L. , Díaz-Marrero Ana R. , Piñero José E. , Fernández José J. , Lorenzo-Morales Jacob
Published: October 2020

Primary amoebic encephalitis (PAM) is a lethal disease caused by the opportunistic pathogen, Naegleria fowleri. This amoebic species is able to live freely in warm aquatic habitats and to infect children and young adults when they perform risk activities in these water bodies such as swimming or splashing. Besides the need to increase awareness of PAM which will allow an early diagnosis, the development of fully effective therapeutic agents is needed. Current treatment options are amphotericin B and miltefosine which are not fully effective and also present toxicity issues. In this study, the in vitro activity of various sesquiterpenes isolated from the red alga Laurencia johnstonii were tested against the trophozoite stage of a strain of Naegleria fowleri. Moreover, the induced effects (apoptotic cell death) of the most active compound, laurinterol (1), was evaluated by measuring DNA condensation, damages at the mitochondrial level, cell membrane disruption and production of reactive oxygen species (ROS). The obtained results demonstrated that laurinterol was able to eliminate the amoebae at concentrations of 13.42 ± 2.57 µM and also to induced programmed cell death (PCD) in the treated amoebae. Moreover, since ATP levels were highly affected and laurinterol has been previously reported as an inhibitor of the Na+/K+-ATPase sodium–potassium ion pump, comparison with known inhibitors of ATPases were carried out. Our results points out that laurinterol was able to inhibit ENA ATPase pump at concentrations 100 times lower than furosemide.
Short foveo-disc distance in situs inversus of optic disc
Authors: Shin Young In , Lee Kyoung Min , Kim Martha , Oh Sohee , Kim Seok Hwan
Published: October 2020

Situs inversus of optic disc (SIOD) is thought to be a congenital optic disc abnormality that is caused by dysversion of optic nerve insertion. SIOD, however, has many additional features that cannot be explained by abnormal optic-nerve-insertion directionality. In this study, we measured the distance between the fovea and disc in 22 eyes of 15 SIOD patients. For comparison, two control eyes were matched with each SIOD eye by age and axial length. The vertical distance between the temporal vascular arcades also was measured. The foveo-disc distance was shorter in the SIOD eyes than in the control eyes, while the inter-arcade distance did not differ. Further, we measured the circumpapillary retinal nerve fiber layer thickness, which showed nasal crowding of two humps in the SIOD eyes. This nasal crowding disappeared when we shifted the circle scan by the mean difference (465 μm) of the foveal-disc distance between the two groups. Our findings suggest that the optic disc was located closer to the fovea than it would have been normally. Thus, SIOD might reflect incomplete expansion of the posterior pole in the direction of the fovea-disc axis.
The role of suction thrust in the metachronal paddles of swimming invertebrates
Authors: Colin Sean P. , Costello John H. , Sutherland Kelly R. , Gemmell Brad J. , Dabiri John O. , Du Clos Kevin T.
Published: October 2020

An abundance of swimming animals have converged upon a common swimming strategy using multiple propulsors coordinated as metachronal waves. The shared kinematics suggest that even morphologically and systematically diverse animals use similar fluid dynamic relationships to generate swimming thrust. We quantified the kinematics and hydrodynamics of a diverse group of small swimming animals who use multiple propulsors, e.g. limbs or ctenes, which move with antiplectic metachronal waves to generate thrust. Here we show that even at these relatively small scales the bending movements of limbs and ctenes conform to the patterns observed for much larger swimming animals. We show that, like other swimming animals, the propulsors of these metachronal swimmers rely on generating negative pressure along their surfaces to generate forward thrust (i.e., suction thrust). Relying on negative pressure, as opposed to high pushing pressure, facilitates metachronal waves and enables these swimmers to exploit readily produced hydrodynamic structures. Understanding the role of negative pressure fields in metachronal swimmers may provide clues about the hydrodynamic traits shared by swimming and flying animals.
High strength and low swelling composite hydrogels from gelatin and delignified wood
Authors: Wang Shennan , Li Kai , Zhou Qi
Published: October 2020

A delignified wood template with hydrophilic characteristics and high porosity was obtained by removal of lignin. Gelatin was infiltrated into the delignified wood and further crosslinked with a natural crosslinker genipin to form hydrogels. The composite hydrogels showed high mechanical strength under compression and low swelling in physiological condition. The effect of genipin concentrations (1, 50 and 100 mM) on structure and properties of the composite hydrogels were studied. A porous honeycomb structure with tunable pore size and porosity was observed in the freeze-dried composite hydrogels. High elastic modulus of 11.82 ± 1.51 MPa and high compressive yield stress of 689.3 ± 34.9 kPa were achieved for the composite hydrogel with a water content as high as 81%. The equilibrium water uptake of the freeze-dried hydrogel in phosphate buffered saline at 37 °C was as low as 407.5%. These enables the delignified wood structure an excellent template in composite hydrogel preparation by using infiltration and in-situ synthesis, particularly when high mechanical strength and stiffness are desired.
Characterization of microvascular tortuosity in retinal vein occlusion utilizing optical coherence tomography angiography
Authors: Lee Hyungwoo , Kim Myung Ae , Kim Hyung Chan , Chung Hyewon
Published: October 2020

We investigated the characteristics of microvessel tortuosity in branch retinal vein occlusion (BRVO) and central retinal vein occlusion (CRVO) and their associations with visual outcomes using optical coherence tomography angiography (OCTA). Thirty-four BRVO and 21 CRVO patients and 31 healthy subjects were included. From OCTA, the branch number (BN), mean branch length (BL), mean Euclidean length (EL), vessel density (VD) and vessel tortuosity (VT) were quantified. In BRVO eyes, compared with that in the controls, the affected area of the deep capillary plexus (DCP) showed a decreased BN and VD, an increased BL, and unchanged VT. The nonaffected area of the DCP showed decreases in BN, VD and VT. The affected area of the superficial capillary plexus (SCP) showed higher VT. In CRVO eyes, the DCP showed a lower BN, VD and VT, while the SCP showed a lower BN and greater BL and EL. Improved visual acuity (VA) after 1 year in BRVO eyes was associated with decreases in BN, BL, VD and VT in the affected area in the DCP and lower VT in the nonaffected area of the SCP; in CRVO eyes, improved VA was associated with a higher BL and EL in the DCP. VT, BL, and EL may be new microvascular markers associated with changes in VA in BRVO and CRVO.
Anatomy and evolution of the pectoral filaments of threadfins (Polynemidae)
Authors: Presti Paulo , Johnson G. David , Datovo Aléssio
Published: October 2020

The most remarkable anatomical specialization of threadfins (Percomorphacea: Polynemidae) is the division of their pectoral fin into an upper, unmodified fin and a lower portion with rays highly modified into specialized filaments. Such filaments are usually elongate, free from interradial membrane, and move independently from the unmodified fin to explore the environment. The evolution of the pectoral filaments involved several morphological modifications herein detailed for the first time. The posterior articular facet of the coracoid greatly expands anteroventrally during development. Similar expansions occur in pectoral radials 3 and 4, with the former usually acquiring indentations with the surrounding bones and losing association with both rays and filaments. Whereas most percomorphs typically have four or five muscles serving the pectoral fin, adult polynemids have up to 11 independent divisions in the intrinsic pectoral musculature. The mainadductorandabductormuscles masses of the pectoral system are completely divided into two muscle segments, each independently serving the pectoral-fin rays (dorsally) and the pectoral filaments (ventrally). Based on the innervation pattern and the discovery of terminal buds in the external surface of the filaments, we demonstrate for the first time that the pectoral filaments of threadfins have both tactile and gustatory functions.