bluuebunny/crossref_metadata_2025 huggingface dataset:
Ecological Stoichiometric Characteristics of Plant–Soil–Microorganism of Grassland Ecosystems under Different Restoration Modes in the Karst Desertification Area
Authors: Song Shuzhen , Xiong Kangning , Chi Yongkuan
Published: July 2023

C, N and P are the key biogenic elements of terrestrial ecosystems, and their biogeochemical processes regulate nutrient cycling and play a key role in restoring degraded ecosystems. In this paper, the grassland ecosystem under artificial restoration measures (Dactylis glomerata (DG), Lolium perenne (LP), Lolium perenne + Trifolium repens (LT)), and the natural restoration measures (NG) in a typical karst plateau desertification control area of southwest China, were taken as the research object. The C, N, and P concentrations and the ecological stoichiometry of the plant–soil–microorganism system in grasslands under different restoration measures in the karst desertification area were explored. We established the following findings: (1) Compared with NG, the C, N and P concentrations of plants and soil in DG, LP and LT were higher, and LT was the highest. (2) The microbial biomass carbon (MBC), microbial biomass nitrogen (MBN) and microbial biomass phosphorus (MBP) concentrations in LT was also the highest. (3) The C:N ratio of plant and soil indicated that the N mineralization and nutrient release rate of DG, LP and LT were stronger than that of NG, and the plant growth of NG was most seriously limited by nitrogen. The N:P ratio in plant and soil indicated that the grassland was limited by P in the four treatments. (4) The result of correlation analysis showed that the cycling process of C, N and P in the plant–soil–microorganism system was coupled, and that the elements closely affected each other. In general, the effect of artificial restoration on a degraded ecosystem was relatively better than the natural restoration for increasing plant, soil and microbial nutrient concentrations, especially in the mixed-seed ecosystem of leguminous and gramineous forage. However, in the future, grassland management, appropriate N fertilizer or N-fixing plants and P fertilizer should be considered to improve the limitation of plant N and P, so as to realize the sustainable development of grasslands and the restoration of degraded ecosystems in the karst desertification control area.
Combined Application of Boron and Zinc Improves Seed and Oil Yields and Oil Quality of Oilseed Rape (Brassica napus L.)
Authors: Safdar Muhammad Ehsan , Qamar Rafi , Javed Amara , Nadeem Muhammad Ather , Javeed Hafiz Muhammad Rashad , Farooq Shahid , Głowacka Aleksandra , Michałek Sławomir , Alwahibi Mona S. , Elshikh Mohamed S. , Ahmed Mohamed A. A.
Published: July 2023

Oilseed crops require several micronutrients to support their physiological functions and reproductive phases. A deficiency of these nutrients can significantly reduce the yield and oil quality of oilseed crops. Soil application of micronutrients can reduce their deficiency and improve plant growth, yield, and oil quality. Oilseed rape (Brassica napus L.) is an important oilseed crop that produces oil with low levels of saturated fat and high levels of beneficial omega-3 fatty acids, which renders it a widely used cooking oil. However, the yield and oil quality of oilseed rape are significantly affected by the deficiency of boron (B) and zinc (Zn). This two-year field study determined the influence of sole and combined soil application of B and Zn on the physiological attributes of plants, seed and oil yields, and oil quality under semiarid climatic conditions. Nine different B and Z combinations, i.e., B0 + Zn0 (control), B0 + Zn8, B0 + Zn10, B1 + Zn0, B1 + Zn8, B1 + Zn10, B2 + Zn0, B2 + Zn8, and B2 + Zn10 (kg ha−1), were included in the study. Sole and combined application of B and Zn significantly altered physiological attributes, seed and oil yields, and oil quality. The highest values for plant height, number of siliques per plant, number of seeds per silique, 1000-seed weight, seed and oil yields, oil quality (higher stearic acid, palmitic acid, oleic acid, linoleic acid, linolenic acid, and lower erucic acid), and physiological traits (protein concentration, soluble sugar concentration, chlorophyll concentration, photosynthesis and transpiration rates, and stomatal conductance) were recorded with the combined application of 2 + 8 kg ha−1 B and Zn, respectively, during both years of this study. The lowest values of yield- and oil-quality-related traits and physiological attributes were recorded for the control treatment. A dose-dependent improvement was recorded in B and Zn contents in leaves, and the highest values were recorded with the combined soil application of 2 + 10 kg ha−1 B + Zn, respectively. It can be concluded that 2 + 8 kg ha−1 B + Zn should be applied to oilseed rape for higher seed and oil yields and better oil quality under semiarid climatic conditions.
Biofertilizers Improve the Plant Growth, Yield, and Mineral Concentration of Lettuce and Broccoli
Authors: Demir Halil , Sönmez İlker , Uçan Ufuk , Akgün İsmail Hakkı
Published: July 2023

Biofertilizers and organic fertilizers are eco-friendly treatments that reduce the consumption and problems associated with chemical fertilizers. The aim of this research was to investigate the effects of biofertilizers and organic fertilizers on reducing consumption and improving the effectiveness of chemical fertilizer treatments by comparing the growth parameters, yield, quality criteria, and nutrient concentration in lettuce and broccoli grown under greenhouse conditions. The biofertilizer (BM-MegaFlu®) comprised Bacillus megaterium, Pseudomonas fluorescens, and Pantoea agglomerans bacteria. The experiment consisted of six treatments comprising (1) biofertilizer (BF), (2) chemical fertilizer + biofertilizer (CF + BF), (3) chemical fertilizer (CF), (4) CF (1/2 dose) + BF, (5) CF (1/3 dose) + BF, and (6) organic fertilizer (OF + BF). BF did not adversely affect the head height and root collar diameter of lettuce; on the contrary, it showed non-significant differences with CF + BF, BF, CF (1/2) + BF, and CF (1/3) + BF treatments and CF alone. The highest total and marketable yields were obtained from CF + BF, CF, CF (1/2) + BF treatments in lettuce. The total yield was the highest in the CF + BF, CF, CF (1/2) + BF, and CF (1/3) + BF treatments in broccoli. In conclusion, the biofertilizer had a supportive effect on the use of chemical fertilizers in lettuce and broccoli production, especially the CF (1/2) + BF treatment in lettuce. The CF (1/2) + BF and CF (1/3) + BF treatments in broccoli showed similar yields to CF. In both crops, BF could provide 50% chemical fertilizer savings.
Multiple Traits Selection Strategies: A Proposal for Coffee Plant Breeding
Authors: Piza Mateus Ribeiro , Luz Silvana Ramlow Otto Teixeira da , Andrade Vinicius Teixeira , Figueiredo Vanessa Castro , Abrahão Juliana Costa de Rezende , Bruzi Adriano Teodoro , Botelho Cesar Elias
Published: July 2023

Experiments with progenies of perennial species such as coffee are generally affected by the heterogeneity of residual variances between information repeatedly collected in space and time on the same individual. In this study, we propose an index that considers the individual heritability of multiple traits for progeny selection and evaluate the applicability of this index in comparison with other indices in a real dataset. Data from 30 coffee genotypes in the F4:5 generation were used to obtain the individual heritability values (hi2) of progenies that were subjected to factorial analysis to obtain the scores and construct a scatter plot, where graphical analysis (GA) was applied. Genetic gains were obtained for productivity and resistance to Cercospora leaf spot using GA. The best performance among the strategies (−12.11%) was obtained using GA for resistance to Cercospora leaf spot, which has low heritability—contrary to the result obtained using the commonly used index based on the sum of Mulamba and Mock ranks. The GA approach allows an assertive selection to minimize the effects of heterogeneity between seasons, and greater genetic gains are obtained. Its use as a tool for the selection of perennial plant progenies based on multiple characters is promising.
Effects of Irrigation and Fertilization Management on Yield and Quality of Rice and the Establishment of a Quality Evaluation System
Authors: Hu Jiazhen , Zhang Shuna , Yang Shihong , Zhou Jiaoyan , Jiang Zewei , Qi Suting , Xu Yi
Published: July 2023

Yield and rice quality indicators of crops are a direct reflection of the rational irrigation and fertilizer strategy. However, the effects of controlled irrigation (CI) combined with the split application of fertilization managements (straw returning, organic fertilizer, and conventional fertilizer) on rice quality are not clear in southeast China. This study aims at exploring the effects of three fertilization managements applied under CI or flooding irrigation on rice yield, quality, enzyme activity, and soluble sugar content including 43 indicators, to determine the optimal comprehensive evaluation model, management, and representative indexes. The results showed that compared with CF (CI + conventional fertilizer), CS (CI + straw returning) significantly increased yield (27.65%), irrigation water use efficiency (6.20%), chalky grain rate (9.67%), chalkiness (1.83%), protein content (4.29%), and amylose content (0.33%), indicating that CS improved yield and milling quality but decreased cooking and appearance quality. This was mainly because CS promoted the activities of alpha-amylase, ADPG (ADP-glucose pyrophosphorylase), and GBSS (granule-bound starch synthase) and reduced the soluble sugar content in rice. Grey relational degree analysis (GRD), the entropy method (ETM), and TOPSIS (the technique for order preference by similarity to an ideal solution) were used to comprehensively evaluate the rice quality and determined that CS treatments could synergistically improve yield and rice quality. The five indexes (adhesive strength, HPV, ADPG, soluble sugar (leaf), yield) and TOPSIS model can be used as the best indexes and model to evaluate the rice quality. These results could provide scientific management and evaluate practices for high-yield and high-quality rice cultivation, which may be promising for a cleaner production strategy.
QTL Mapping and Functional Identification of Candidate Genes Regulated by Sinorhizobium fredii HH103 and Associated with Nodulation Traits in Soybean
Authors: Ni Hejia , Tian Siyi , Zhang Guoqing , Huo Jingyi , Tian Huilin , Peng Yang , Yu Kaixin , Chen Qingshan , Wang Jinhui , Xin Dawei , Liu Chunyan
Published: July 2023

Large amounts of nitrogen fertilizer are annually applied to improve soybean yield. However, the overuse of nitrogen fertilizers has resulted in significant environmental pollution. Biological nitrogen fixation is an ecological and environmentally friendly method to increase soybean yield. However, the signaling pathway and function of genes in the plant host regulated by rhizobia under the symbiotic relationship remain unknown. In this study, the chromosome region in soybean responsive to Sinorhizobium fredii HH103 was identified using chromosome-segment-substituted lines produced from a cross between cultivated soybean SN14 and wild soybean Zyd00006. In addition, candidate genes associated with nodulation traits and regulated by S. fredii HH103 were identified. In total, three quantitative trait loci (QTLs) containing 68 genes were identified on chromosomes 02, 05, and 20. The differentially expressed genes among the QTL regions were determined using RNA-seq and qRT-PCR. Glyma. 05G240500, a potential gene responding to S. fredii HH103 and positively regulating soybean nodulation, was identified. To explore the relationships between haplotypes and soybean nodulation phenotypes, SNPs found in the regulatory areas of Glyma.05G240500 haplotype were investigated. Our study revealed the role of Glyma.05G240500 in symbiosis and provided a reference for facilitating symbiotic nitrogen fixation in the field and for marker-assisted selection.
Application of Molecular Markers in Crop Improvement and Beyond
Authors: Panthee Dilip R.
Published: July 2023

The application of molecular markers in crop improvement first started in the 1980s [...]
Focusing on Social Behaviors: Improving the Perceived Warmth of Sharks in an Aquarium Setting
Authors: Neves Joao , Giger Jean-Christophe , Alves Vasco , Soares Nuno
Published: July 2023

Sharks are commonly depicted as intentionally dangerous predators and are considered a threat by the general public, limiting support for and success of global shark conservation. Following the SCM framework, this study aimed at testing the effect of information on the social lives of sharks alone or paired with circumstantial humor on the participants’ perceived warmth of sharks before visiting an aquarium. The present study took place in a naturalistic setting, allowing testing of the variables in a pseudo-real-world environment where results can objectively help in the implementation of strategies on the ground. A total sample of 303 visitors participated in this study, where three conditions (control: 100; social information: 102; social information with humor: 101) were tested. Results showed that, although mild, it was possible to affect the warmth dimension of the shark’s stereotype, most likely due to the presence of information about the social lives of sharks. This information slightly leveraged the perceived warmth dimension, although still far from the less threatening stereotype as aimed. Results also highlight the possible importance of using videos within the strategic communication and education approaches in aquariums in order to be most effective in challenging the shark stereotype. Limitations and future research ideas are explored.
Genomic Medicine in Canine Periodontal Disease: A Systematic Review
Authors: Silva Carolina , Requicha João , Dias Isabel , Bastos Estela , Viegas Carlos
Published: July 2023

Genomic medicine has become a growing reality; however, it is still taking its first steps in veterinary medicine. Through this approach, it will be possible to trace the genetic profile of a given individual and thus know their susceptibility to certain diseases, namely periodontal disease. This condition is one of the most frequently diagnosed in companion animal clinics, especially in dogs. Due to the limited existing information and the lack of comprehensive studies, the objective of the present study was to systematically review the existing scientific literature regarding genomic medicine in canine periodontal disease and determine which genes have already been studied and their probable potential. This study followed the recommendations of the PRISMA 2020 methodology. Canine periodontal disease allied to genomic medicine were the subjects of this systematic review. Only six articles met all of the inclusion criteria, and these were analyzed in detail. These studies described genetic variations in the following genes: interleukin-6, interleukin-10, interleukin-1, lactotransferrin, toll-like receptor 9, and receptor activator of nuclear factor-kappa B. Only in two of them, namely interleukin-1 and toll-like receptor 9 genes, may the identified genetic variations explain the susceptibility that certain individuals have to the development of periodontal disease. It is necessary to expand the studies on the existing polymorphic variations in genes and their relationship with the development of periodontal disease. Only then will it be possible to fully understand the biological mechanisms that are involved in this disease and that determine the susceptibility to its development.
Effects of Methyl Sulfonyl Methane and Selenium Yeast on Fatty Liver Syndrome in Laying Hens and Their Biological Mechanisms
Authors: Wang Huanbin , Wang Lingfeng , Tian Changyu , Rajput Shahid Ali , Qi Desheng
Published: July 2023

The purpose of this study was to explore the effects of MSM and Se-Y on FLS in laying hens during the late peak laying period and the underlying biological mechanisms. Therefore 240 55-week-old Jing-fen No. 6 laying hens were randomly divided into five groups, with eight replicates in each group and six laying hens in each replicate. The hens were fed a basal diet (Control) and diets supplemented with 350 and 700 mg/kg MSM and 25 and 50 mg/kg Se-Y, respectively, for four weeks. The results showed that MSM and Se-Y had no significant effects on the performance of laying hens. With the increasing dosage of MSM and Se-Y, the symptoms of liver steatosis in laying hens were reduced, and MSM and Se-Y could significantly reduce the content of malondialdehyde (MDA) in serum and liver (p < 0.05) and increase the contents of total superoxide dismutase (T-SOD) and glutathione peroxidase (GPX) in serum and liver (p < 0.05). The RNA-seq results showed that 700 mg/kg MSM significantly downregulated the expression levels of the ATP5I, ATP5G1, CYCS, and UQCRQ genes in the liver, and 50 mg/kg Se-Y significantly downregulated the expression levels of MAPK10, SRC, BMP2, and FGF9 genes in the liver. In conclusion, dietary supplementation with MSM and Se-Y can effectively reduce the FLS of laying hens in the late peak laying period and increase their antioxidant capacity. The underlying biological mechanism may be related to the downregulation of genes involved in liver oxidative phosphorylation and inflammation-related pathways.
Association between Polymorphism in the Janus Kinase 2 (JAK2) Gene and Selected Performance Traits in Cattle and Sheep
Authors: Oster Nicola , Szewczuk Małgorzata Anna , Zych Sławomir , Stankiewicz Tomasz , Błaszczyk Barbara , Wieczorek-Dąbrowska Marta
Published: July 2023

The Janus Kinase 2 (JAK2) tyrosine kinase is an essential component of signal transduction of the class II cytokine receptors, including the growth hormone receptor. Therefore, it may play a crucial role in the signaling pathway of the somatotropic axis, which influences growth, development, and reproductive traits in ruminants. For this purpose, for three breeds of cattle (Hereford, Angus, and Limousin; a total of 781 individuals), two polymorphic sites located in exon 16 (rs210148032; p.Ile704Val, within pseudokinase (JH2)) and exon 23 (silent mutation rs211067160, within JH1 kinase domain) were analyzed. For two breeds of sheep (Pomeranian and Suffolk; 333 individuals in total), two polymorphic sites in exon 6 (rs160146162 and rs160146160; encoding the FERM domain) and one polymorphic site in exon 24 of the JAK2 gene (rs160146116; JH1 kinase domain) were genotyped. In our study, the associations examined for cattle were inconclusive. However, Hereford and Limousin cattle with genotypes AA (e16/RsaI) and AA (e23/HaeIII) tended to have the highest body weight and better daily gains (p ≤ 0.05). No clear tendency was observed in the selected reproductive traits. In the case of sheep, regardless of breed, individuals with the AA (e6/EarI), GG (e6/seq), and AA (e24/Hpy188III) genotypes had the highest body weights and daily gains in the study periods (p ≤ 0.01). The same individuals in the Pomeranian breed also had better fertility and lamb survival (p ≤ 0.01). To the best of our knowledge, these are the first association studies for all these polymorphic sites. Single-nucleotide polymorphisms in the JAK2 gene can serve as genetic markers for growth and selected reproductive traits in ruminants given that they are further investigated in subsequent populations and analyzed using haplotype and/or combined genotype systems.
Application of Mamdani Fuzzy Inference System in Poultry Weight Estimation
Authors: Küçüktopçu Erdem , Cemek Bilal , Simsek Halis
Published: July 2023

Traditional manual weighing systems for birds on poultry farms are time-consuming and may compromise animal welfare. Although automatic weighing systems have been introduced as an alternative, they face limitations in accurately estimating the weight of heavy birds. Therefore, exploring alternative methods that offer improved efficiency and precision is necessary. One promising solution lies in the application of AI, which has the potential to revolutionize various aspects of poultry production and management, making it an indispensable tool for the modern poultry industry. This study aimed to develop an AI approach based on the FL model as a viable solution for estimating poultry weight. By incorporating expert knowledge and considering key input variables such as indoor temperature, indoor humidity, and feed consumption, FL-based models were developed with different configurations using Mamdani inferences and evaluated across eight different rearing periods in Samsun, Türkiye. This study’s results demonstrated the effectiveness of FL-based models in estimating poultry weight. The models achieved varying average absolute error values across different age groups of broilers, ranging from 0.02% to 5.81%. These findings suggest that FL-based methods hold promise for accurate and efficient poultry weight estimation. This study opens up avenues for further research in the field, encouraging the exploration of FL-based approaches for improved poultry weight estimation in poultry farming operations.
A Method for Obtaining 3D Point Cloud Data by Combining 2D Image Segmentation and Depth Information of Pigs
Authors: Wang Shunli , Jiang Honghua , Qiao Yongliang , Jiang Shuzhen
Published: July 2023

This paper proposes a method for automatic pig detection and segmentation using RGB-D data for precision livestock farming. The proposed method combines the enhanced YOLOv5s model with the Res2Net bottleneck structure, resulting in improved fine-grained feature extraction and ultimately enhancing the precision of pig detection and segmentation in 2D images. Additionally, the method facilitates the acquisition of 3D point cloud data of pigs in a simpler and more efficient way by using the pig mask obtained in 2D detection and segmentation and combining it with depth information. To evaluate the effectiveness of the proposed method, two datasets were constructed. The first dataset consists of 5400 images captured in various pig pens under diverse lighting conditions, while the second dataset was obtained from the UK. The experimental results demonstrated that the improved YOLOv5s_Res2Net achieved a mAP@0.5:0.95 of 89.6% and 84.8% for both pig detection and segmentation tasks on our dataset, while achieving a mAP@0.5:0.95 of 93.4% and 89.4% on the Edinburgh pig behaviour dataset. This approach provides valuable insights for improving pig management, conducting welfare assessments, and estimating weight accurately.
Biological Matrices from Cairina moschata as Non-Destructive Biomonitoring Tools to Study Environmental Quality of Urban and Extra-Urban Areas: A Case Study of Palermo (Sicily, Italy)
Authors: Di Nicola Matteo Riccardo , Novello Christian , Lo Valvo Mario , Lo Dico Gianluigi Maria , Bianchi Vittoria Giulia , Mercuri Santo Raffaele , Giornetti Marcella
Published: July 2023

Biomonitoring is the qualitative observation and the measurement of biosphere parameters aimed at modelling the environment, evaluating its quality, and studying the effects of alterations on different ecological levels. In this work, trace metal concentrations were assessed using non-destructive biomonitoring tools as blood and feathers of the allochthonous aquatic bird Cairina moschata, collected within two areas of the Palermo metropolitan area, Sicily, differently exposed to air pollution: Parco D’Orleans, in a central urban location, and Monreale, southwest of the city centre. Higher concentrations in both blood and feathers collected in Parco D’ Orleans were found for lead, tin and selenium, but the same was not observed for other metals. The concentrations were not above physiological tolerance in any case. The comparison between blood and feathers allowed to realize that the latter are more useful for biomonitoring analyses, as they are indicative of both external contamination and bioaccumulation. Treatment with nitric acid highlighted that the feathers collected in Parco D’ Orleans had higher metal bioaccumulation than the ones collected in Monreale; however, the treatment needs standardization. The present study confirms that feathers and blood from C. moschata are a convenient and non-destructive sampling tool for metal contamination analysis.
Role of Antimicrobial Resistance in Outcomes of Acute Endophthalmitis
Authors: Yap Aaron , Muttaiyah Sharmini , Welch Sarah , Niederer Rachael L.
Published: July 2023

Background: This study explores local trends in antimicrobial resistance and its influence on long-term visual outcomes following treatment with broad-spectrum empiric intravitreal antibiotics. Methods: All patients undergoing intraocular sampling for endophthalmitis from Auckland between January 2006–May 2023 were included. The impact of antimicrobial resistance on the final visual outcome was analysed using logistic regression models. Results: 389 cases of endophthalmitis were included, and 207 eyes (53.2%) were culture positive. When tested, all Gram-positive microorganisms were fully susceptible to Vancomycin, and all Gram-negative microorganisms demonstrated full or intermediate susceptibility to Ceftazidime. Resistance to at least one antimicrobial agent was present in 89 culture results (43.0%), and multidrug resistance (resistant to ≥3 antimicrobials) in 23 results (11.1%). No increase in resistance was observed over time. The primary procedure was a tap and inject in 251 eyes (64.5%), and early vitrectomy was performed in 196 eyes (50.3%). Severe vision loss (≤20/200) occurred in 167 eyes (42.9%). Antimicrobial resistance was associated with an increased risk of retinal detachment (OR 2.455 p = 0.048) but not vision loss (p = 0.288). Conclusion: High sensitivity to Vancomycin and Ceftazidime was present in our population, reinforcing their role as first-line empiric treatments. Resistant microorganisms were associated with an increased risk of retinal detachment but no alteration in final visual outcome.
Comparison of Cefotaxime-Resistant Escherichia coli and sul1 and intI1 by qPCR for Monitoring of Antibiotic Resistance of Wastewater, Surface Water, and Recycled Water
Authors: Liguori Krista , Calarco Jeanette , Maldonado Rivera Gabriel , Kurowski Anna , Keenum Ishi , Davis Benjamin C. , Harwood Valerie J. , Pruden Amy
Published: July 2023

Awareness of the need for surveillance of antimicrobial resistance (AMR) in water environments is growing, but there is uncertainty regarding appropriate monitoring targets. Adapting culture-based fecal indicator monitoring to include antibiotics in the media provides a potentially low-tech and accessible option, while quantitative polymerase chain reaction (qPCR) targeting key genes of interest provides a broad, quantitative measure across the microbial community. The purpose of this study was to compare findings obtained from the culture of cefotaxime-resistant (cefR) Escherichia coli with two qPCR methods for quantification of antibiotic resistance genes across wastewater, recycled water, and surface waters. The culture method was a modification of US EPA Method 1603 for E. coli, in which cefotaxime is included in the medium to capture cefR strains, while qPCR methods quantified sul1 and intI1. A common standard operating procedure for each target was applied to samples collected by six water utilities across the United States and processed by two laboratories. The methods performed consistently, and all three measures reflected the same overarching trends across water types. The qPCR detection of sul1 yielded the widest dynamic range of measurement as an AMR indicator (7-log versus 3.5-log for cefR E. coli), while intI1 was the most frequently detected target (99% versus 96.5% and 50.8% for sul1 and cefR E. coli, respectively). All methods produced comparable measurements between labs (p < 0.05, Kruskal–Wallis). Further study is needed to consider how relevant each measure is to capturing hot spots for the evolution and dissemination of AMR in the environment and as indicators of AMR-associated human health risk.
Preventing Multidrug-Resistant Bacterial Transmission in the Intensive Care Unit with a Comprehensive Approach: A Policymaking Manual
Authors: Schinas Georgios , Polyzou Elena , Spernovasilis Nikolaos , Gogos Charalambos , Dimopoulos George , Akinosoglou Karolina
Published: July 2023

Patients referred to intensive care units (ICU) commonly contract infections caused by multidrug-resistant (MDR) bacteria, which are typically linked to complications and high mortality. There are numerous independent factors that are associated with the transmission of these pathogens in the ICU. Preventive multilevel measures that target these factors are of great importance in order to break the chain of transmission. In this review, we aim to provide essential guidance for the development of robust prevention strategies, ultimately ensuring the safety and well-being of patients and healthcare workers in the ICU. We discuss the role of ICU personnel in cross-contamination, existing preventative measures, novel technologies, and strategies employed, along with antimicrobial surveillance and stewardship (AMSS) programs, to construct effective and thoroughly described policy recommendations. By adopting a multifaceted approach that combines targeted interventions with broader preventive strategies, healthcare facilities can create a more coherent line of defense against the spread of MDR pathogens. These recommendations are evidence-based, practical, and aligned with the needs and realities of the ICU setting. In conclusion, this comprehensive review offers a blueprint for mitigating the risk of MDR bacterial transmission in the ICU, advocating for an evidence-based, multifaceted approach.
Whole-Genome Sequencing to Predict Mycobacterium tuberculosis Drug Resistance: A Retrospective Observational Study in Eastern China
Authors: Zhang Mingwu , Lu Yewei , Zhu Yelei , Wu Kunyang , Chen Songhua , Zhou Lin , Wang Fei , Peng Ying , Li Xiangchen , Pan Junhang , Chen Bin , Liu Zhengwei , Wang Xiaomeng
Published: July 2023

Pulmonary tuberculosis (TB) is an infectious disease caused by Mycobacterium tuberculosis (MTB). Whole-genome sequencing (WGS) holds great promise as an advanced technology for accurately predicting anti-TB drug resistance. The development of a reliable method for detecting drug resistance is crucial in order to standardize anti-TB treatments, enhance patient prognosis, and effectively reduce the risk of transmission. In this study, our primary objective was to explore and determine the potential of WGS for assessing drug resistance based on genetic variants recommended by the World Health Organization (WHO). A total of 1105 MTB strains were selected from samples collected from 2014–2018 in Zhejiang Province, China. Phenotypic drug sensitivity tests (DST) of the anti-TB drugs were conducted for isoniazid (INH), rifampicin (RFP), streptomycin, ethambutol, fluoroquinolones (levofloxacin and moxifloxacin), amikacin, kanamycin, and capreomycin, and the drug-resistance rates were calculated. The clean WGS data of the 1105 strains were acquired and analyzed. The predictive performance of WGS was evaluated by the comparison between genotypic and phenotypic DST results. For all anti-TB drugs, WGS achieved good specificity values (>90%). The sensitivity values for INH and RFP were 91.78% and 82.26%, respectively; however, they were ≤60% for other drugs. The positive predictive values for anti-TB drugs were >80%, except for ethambutol and moxifloxacin, and the negative predictive values were >90% for all drugs. In light of the findings from our study, we draw the conclusion that WGS is a valuable tool for identifying genome-wide variants. Leveraging the genetic variants recommended by the WHO, WGS proves to be effective in detecting resistance to RFP and INH, enabling the identification of multi-drug resistant TB patients. However, it is evident that the genetic variants recommended for predicting resistance to other anti-TB drugs require further optimization and improvement.
Biofilm of Helicobacter pylori: Life Cycle, Features, and Treatment Options
Authors: Elshenawi Yasmine , Hu Shuai , Hathroubi Skander
Published: July 2023

Helicobacter pylori is a gastric pathogen that infects nearly half of the global population and is recognized as a group 1 carcinogen by the Word Health Organization. The global rise in antibiotic resistance has increased clinical challenges in treating H. pylori infections. Biofilm growth has been proposed to contribute to H. pylori’s chronic colonization of the host stomach, treatment failures, and the eventual development of gastric diseases. Several components of H. pylori have been identified to promote biofilm growth, and several of these may also facilitate antibiotic tolerance, including the extracellular matrix, outer membrane proteins, shifted morphology, modulated metabolism, efflux pumps, and virulence factors. Recent developments in therapeutic approaches targeting H. pylori biofilm have shown that synthetic compounds, such as small molecule drugs and plant-derived compounds, are effective at eradicating H. pylori biofilms. These combined topics highlight the necessity for biofilm-based research in H. pylori, to improve current H. pylori-targeted therapeutic approaches and alleviate relative public health burden. In this review we discuss recent discoveries that have decoded the life cycle of H. pylori biofilms and current biofilm-targeted treatment strategies.
Exploring Antibiotic-Potentiating Effects of Tobramycin–Deferiprone Conjugates in Pseudomonas aeruginosa
Authors: Gandhi Karan , Dhiman Shiv , Arora Rajat , Ramirez Danzel Marie , Ramirez Danyel , Arthur Gilbert , Schweizer Frank
Published: July 2023

Metal ions, including Fe3+, affect the target site binding of some antibiotics and control the porin- and siderophore-mediated uptake of antibiotics. Amphiphilic tobramycins are an emerging class of antibiotic potentiators capable of synergizing with multiple classes of antibiotics against Gram-negative bacteria, including Pseudomonas aeruginosa. To study how the antibiotic-potentiating effect of amphiphilic tobramycins is affected by the presence of intermolecular iron chelators, we conjugated the FDA-approved iron chelator deferiprone (DEF) to tobramycin (TOB). Three TOB-DEF conjugates differing in the length of the carbon tether were prepared and tested for antibacterial activity and synergistic relationships with a panel of antibiotics against clinical isolates of P. aeruginosa. While all TOB-DEF conjugates were inactive against P. aeruginosa, the TOB-DEF conjugates strongly synergized with outer-membrane-impermeable antibiotics, such as novobiocin and rifampicin. Among the three TOB-DEF conjugates, 1c containing a C12 tether showed a remarkable and selective potentiating effect to improve the susceptibility of multidrug-resistant P. aeruginosa isolates to tetracyclines when compared with other antibiotics. However, the antibacterial activity and antibiotic-potentiating effect of the optimized conjugate was not enhanced under iron-depleted conditions, indicating that the function of the antibiotic potentiator is not affected by the Fe3+ concentration.
Mitochondrial Volume Regulation and Swelling Mechanisms in Cardiomyocytes
Authors: Chapa-Dubocq Xavier R. , Rodríguez-Graciani Keishla M. , Escobales Nelson , Javadov Sabzali
Published: July 2023

Mitochondrion, known as the “powerhouse” of the cell, regulates ion homeostasis, redox state, cell proliferation and differentiation, and lipid synthesis. The inner mitochondrial membrane (IMM) controls mitochondrial metabolism and function. It possesses high levels of proteins that account for ~70% of the membrane mass and are involved in the electron transport chain, oxidative phosphorylation, energy transfer, and ion transport, among others. The mitochondrial matrix volume plays a crucial role in IMM remodeling. Several ion transport mechanisms, particularly K+ and Ca2+, regulate matrix volume. Small increases in matrix volume through IMM alterations can activate mitochondrial respiration, whereas excessive swelling can impair the IMM topology and initiates mitochondria-mediated cell death. The opening of mitochondrial permeability transition pores, the well-characterized phenomenon with unknown molecular identity, in low- and high-conductance modes are involved in physiological and pathological increases of matrix volume. Despite extensive studies, the precise mechanisms underlying changes in matrix volume and IMM structural remodeling in response to energy and oxidative stressors remain unknown. This review summarizes and discusses previous studies on the mechanisms involved in regulating mitochondrial matrix volume, IMM remodeling, and the crosstalk between these processes.
Up-Cycling Grape Pomace through Sourdough Fermentation: Characterization of Phenolic Compounds, Antioxidant Activity, and Anti-Inflammatory Potential
Authors: Torreggiani Andrea , Demarinis Chiara , Pinto Daniela , Papale Angela , Difonzo Graziana , Caponio Francesco , Pontonio Erica , Verni Michela , Rizzello Carlo Giuseppe
Published: July 2023

Despite its appealing composition, because it is rich in fibers and polyphenols, grape pomace, the major by-product of the wine industry, is still discarded or used for feed. This study aimed at exploiting grape pomace functional potential through fermentation with lactic acid bacteria (LAB). A systematic approach, including the progressively optimization of the grape pomace substrate, was used, evaluating pomace percentage, pH, and supplementation of nitrogen and carbon sources. When grape pomace was used at 10%, especially without pH correction, LAB cell viability decreased up to 2 log cycles. Hence, the percentage was lowered to 5 or 2.5% and supplementations with carbon and nitrogen sources, which are crucial for LAB metabolism, were considered aiming at obtaining a proper fermentation of the substrate. The optimization of the substrate enabled the comparison of strains performances and allowed the selection of the best performing strain (Lactiplantibacillus plantarum T0A10). A sourdough, containing 5% of grape pomace and fermented with the selected strain, showed high antioxidant activity on DPPH and ABTS radicals and anti-inflammatory potential on Caco2 cells. The anthocyanins profile of the grape pomace sourdough was also characterized, showing qualitative and quantitative differences before and after fermentation. Overall, the grape pomace sourdough showed promising applications as a functional ingredient in bread making.
Bilirubin and Redox Stress in Age-Related Brain Diseases
Authors: Llido John Paul , Jayanti Sri , Tiribelli Claudio , Gazzin Silvia
Published: July 2023

Cellular redox status has a crucial role in brain physiology, as well as in pathologic conditions. Physiologic senescence, by dysregulating cellular redox homeostasis and decreasing antioxidant defenses, enhances the central nervous system’s susceptibility to diseases. The reduction of free radical accumulation through lifestyle changes, and the supplementation of antioxidants as a prophylactic and therapeutic approach to increase brain health, are strongly suggested. Bilirubin is a powerful endogenous antioxidant, with more and more recognized roles as a biomarker of disease resistance, a predictor of all-cause mortality, and a molecule that may promote health in adults. The alteration of the expression and activity of the enzymes involved in bilirubin production, as well as an altered blood bilirubin level, are often reported in neurologic conditions and neurodegenerative diseases (together denoted NCDs) in aging. These changes may predict or contribute both positively and negatively to the diseases. Understanding the role of bilirubin in the onset and progression of NCDs will be functional to consider the benefits vs. the drawbacks and to hypothesize the best strategies for its manipulation for therapeutic purposes.
Dose- and Time-Dependent Effect of Dietary Blueberries on Diabetic Vasculature Is Correlated with Gut Microbial Signature
Authors: Satheesh Babu Adhini Kuppuswamy , Petersen Chrissa , Paz Henry A. , Benedict Kai , Nguyen Miley , Putich Madison , Saldivar-Gonzalez Miguel , Zhong Ying , Larsen Sydney , Wankhade Umesh D. , Anandh Babu Pon Velayutham
Published: July 2023

Evidence from our lab and others indicates the vascular effects of dietary blueberries. In the present study, we determined dietary blueberries’ dose- and time-dependent effects on diabetic vasculature and their association with gut microbes. Seven-week-old db/db diabetic male mice were fed a diet supplemented with ± freeze-dried wild blueberry powder (FD-BB) for 4, 8, or 12 weeks (three cohorts). Diets contained 0%, 1.23%, 2.46%, and 3.7% of FD-BB, equivalent to 0, ½, 1, and 1.5 human servings of wild blueberries, respectively. The non-diabetic db/+ mice fed a standard diet served as controls. Metabolic parameters, vascular inflammation, and gut microbiome were assessed. Dietary supplementation of 3.7% FD-BB improved vascular inflammation in diabetic mice without improving systemic milieu in all three cohorts. Blueberries improved diabetes-induced gut dysbiosis depending on blueberry dosage and treatment duration. Spearman’s correlation indicated that the opportunistic microbes and commensal microbes were positively and negatively associated with indices of vascular inflammation, respectively. Dietary blueberries reduced the opportunistic microbe that was positively associated with vascular inflammation (Desulfovibrio), and increased the commensal microbe that was negatively associated with vascular inflammation (Akkermansia). Dietary blueberries could be a potential adjunct strategy to beneficially modulate gut microbes and improve vascular complications in diabetes.
Natural Acetogenins, Chatenaytrienins-1, -2, -3 and -4, Mitochondrial Potential Uncouplers and Autophagy Inducers—Promising Anticancer Agents
Authors: Dzhemileva Lilya U. , Tuktarova Regina A. , Dzhemilev Usein M. , D’yakonov Vladimir A.
Published: July 2023

The present paper details the complete stereoselective synthesis of four natural acetogenins, chatenaytrienins-1, -2, -3 and -4, previously isolated from the roots of fruit trees of the family Annonaceae (A. nutans and A. muricata), as an inseparable mixture. The novel organometallic reactions, developed by the authors, of Ti-catalyzed cross-cyclomagnesiation of O-containing and aliphatic allenes using available Grignard reagents were applied at the key stage of synthesis. We have studied the biological activity of the synthesized individual chatenaytrienins-1, -2, -3 and -4 in vitro, including their cytotoxicity in a panel of tumor lines and their ability to induce apoptosis, affect the cell cycle and mitochondria, and activate the main apoptotic signaling pathways in the cell, applying modern approaches of flow cytometry and multiplex analysis with Luminex xMAP technology. It has been shown that chatenaytrienins affect mitochondria by uncoupling the processes of mitochondrial respiration, causing the accumulation of ROS ions, followed by the initiation of apoptosis. The most likely mechanism for the death of cortical neurons from the consumption of tea from the seeds of Annona fruit is long-term chronic hypoxia, which leads to the development of an atypical form of Parkinson’s disease that is characteristic of the indigenous inhabitants of Guam and New Caledonia.
Components of the Glutathione Cycle as Markers of Biological Age: An Approach to Clinical Application in Aging
Authors: Diaz-Del Cerro Estefania , Martinez de Toda Irene , Félix Judith , Baca Adriana , De la Fuente Monica
Published: July 2023

The oxidative-inflammatory theory of aging states that aging is the result of the establishment of a chronic oxidative-inflammatory stress situation in which the immune system is implicated. Among the redox parameters, those involved in the glutathione cycle have been suggested as essential in aging. Thus, the first objective of this study was to determine if several components of the glutathione cycle (glutathione reductase (GR) and glutathione peroxidase (GPx) activities, and concentrations of oxidized glutathione (GSSG) and reduced glutathione (GSH)) in leukocytes) are associated with the biological age (ImmunolAge) estimated using the Immunity Clock in 190 men and women. The second objective was to identify the best blood fraction (whole blood, blood cells, erythrocytes, or plasma) to quantify these components and correlate them with the estimated ImmunolAge. The results show that the oxidative state of peripheral leukocytes correlates with their functionality, supporting the idea that this is the basis of immunosenescence. In blood, the correlations are more significant in the fraction of blood cells with respect to ImmunolAge (positive correlations with GSSG concentration and the GSSG/GSH ratio, and negative correlations with GPx and GR activities). Therefore, blood cells are proposed as the most effective sample to estimate the biological age of individuals in clinical settings.
Kinetics and Mechanism of Epinephrine Autoxidation in the Presence of Plant Superoxide Inhibitors: A New Look at the Methodology of Using a Model System in Biological and Chemical Research
Authors: Volkov Vladimir , Lobanov Anton , Voronkov Mikhail , Baygildiev Timur , Misin Vyacheslav , Tsivileva Olga
Published: July 2023

Superoxide is the primary active oxygen form produced in living organisms. Because of superoxide anion radical formation during epinephrine oxidation in alkaline medium, this system is offered in some works for antioxidant activity analysis, however, without enough physicochemical justification. Therefore, the task of developing reliable methods for analyzing the superoxide inhibition activity of various objects is very urgent. In this work, a kinetic model of epinephrine autoxidation in an alkaline medium in the presence of antioxidants of plant origin is proposed. The participation of chain reactions with long oxidation chains in this process is revealed. The limiting stage of the process is a one-electron reduction of oxygen by the anionic forms of the phenolic hydroxyls of epinephrine. The appearance of the absorption maximum at a wavelength of 347 nm during epinephrine autoxidation is associated with adrenolutin formation, which is confirmed by HPLC/UV/MS. No adduct formation between phenolic antioxidants and epinephrine oxidation products was found. The complex U-shaped character of epinephrine autoxidation rate dependence on the content of antioxidants in the reaction system was shown. The study of the kinetics of epinephrine autoxidation in the presence of an individual phenolic plant superoxide inhibitor, chlorogenic acid, was carried out for the first time. The inhibitory effect of yarrow, chamomile, and bur beggar-ticks plant extracts in the adrenaline system was examined.