bluuebunny/crossref_metadata_2025 huggingface dataset:
Supplementary Data from Colorectal Cancer Is Associated with the Presence of Cancer Driver Mutations in Normal Colon
Authors: Matas Julia , Kohrn Brendan , Fredrickson Jeanne , Carter Kelly , Yu Ming , Wang Ting , Gui Xianyong , Soussi Thierry , Moreno Victor , Grady William M. , Peinado Miguel A. , Risques Rosa Ana
Published: April 2023

Supplementary Data from Colorectal Cancer Is Associated with the Presence of Cancer Driver Mutations in Normal Colon
Supplementary Table from Expansion of Gastric Intestinal Metaplasia with Copy Number Aberrations Contributes to Field Cancerization
Authors: Kumagai Ken , Shimizu Takahiro , Takai Atsushi , Kakiuchi Nobuyuki , Takeuchi Yasuhide , Hirano Tomonori , Takeda Haruhiko , Mizuguchi Aya , Teramura Mari , Ito Takahiko , Iguchi Eriko , Nikaido Mitsuhiro , Eso Yuji , Takahashi Ken , Ueda Yoshihide , Miyamoto Shin'ichi , Obama Kazutaka , Ogawa Seishi , Marusawa Hiroyuki , Seno Hiroshi
Published: April 2023

Supplementary Table from Expansion of Gastric Intestinal Metaplasia with Copy Number Aberrations Contributes to Field Cancerization
Supplementary Data from Association of Genetic Ancestry and Molecular Signatures with Cancer Survival Disparities: A Pan-Cancer Analysis
Authors: Lee Kara Keun , Rishishwar Lavanya , Ban Dongjo , Nagar Shashwat Deepali , Mariño-Ramírez Leonardo , McDonald John F. , Jordan I. King
Published: April 2023

Supplementary Data from Association of Genetic Ancestry and Molecular Signatures with Cancer Survival Disparities: A Pan-Cancer Analysis
Supplementary Data from A Urinary Drug-Disposing Approach as an Alternative to Intravesical Chemotherapy for Treating Nonmuscle Invasive Bladder Cancer
Authors: Bellat Vanessa , Michel Adam O. , Thomas Charlene , Stokol Tracy , Choi Benjamin B. , Law Benedict
Published: April 2023

Supplementary Data from A Urinary Drug-Disposing Approach as an Alternative to Intravesical Chemotherapy for Treating Nonmuscle Invasive Bladder Cancer
Supplementary Table from Cancer-Associated SF3B1 Mutations Confer a BRCA-Like Cellular Phenotype and Synthetic Lethality to PARP Inhibitors
Authors: Lappin Katrina M. , Barros Eliana M. , Jhujh Satpal S. , Irwin Gareth W. , McMillan Hayley , Liberante Fabio G. , Latimer Cheryl , La Bonte Melissa J. , Mills Ken I. , Harkin D. Paul , Stewart Grant S. , Savage Kienan I.
Published: April 2023

Supplementary Table from Cancer-Associated SF3B1 Mutations Confer a BRCA-Like Cellular Phenotype and Synthetic Lethality to PARP Inhibitors
Supplementary Data from Combined Inactivation of CTPS1 and ATR Is Synthetically Lethal to MYC-Overexpressing Cancer Cells
Authors: Sun Zhe , Zhang Ziheng , Wang Qiao-Qi , Liu Ji-Long
Published: April 2023

Supplementary Data from Combined Inactivation of CTPS1 and ATR Is Synthetically Lethal to MYC-Overexpressing Cancer Cells
Supplementary Tables S1-14 from Neoadjuvant Chemotherapy Induces Genomic and Transcriptomic Changes in Ovarian Cancer
Authors: Javellana Melissa , Eckert Mark A. , Heide Janna , Zawieracz Katarzyna , Weigert Melanie , Ashley Sarah , Stock Elizabeth , Chapel David , Huang Lei , Yamada S. Diane , Ahmed Ahmed Ashour , Lastra Ricardo R. , Chen Mengjie , Lengyel Ernst
Published: April 2023

Supplementary Tables
Supplementary Table 5 from Reorganization of the 3D Genome Pinpoints Noncoding Drivers of Primary Prostate Tumors
Authors: Hawley James R. , Zhou Stanley , Arlidge Christopher , Grillo Giacomo , Kron Ken J. , Hugh-White Rupert , van der Kwast Theodorus H. , Fraser Michael , Boutros Paul C. , Bristow Robert G. , Lupien Mathieu
Published: April 2023

Detected chromatin interactions in all 12 tumour and 5 benign samples.
Supplementary Table and Figure Legends from Neoadjuvant Chemotherapy Induces Genomic and Transcriptomic Changes in Ovarian Cancer
Authors: Javellana Melissa , Eckert Mark A. , Heide Janna , Zawieracz Katarzyna , Weigert Melanie , Ashley Sarah , Stock Elizabeth , Chapel David , Huang Lei , Yamada S. Diane , Ahmed Ahmed Ashour , Lastra Ricardo R. , Chen Mengjie , Lengyel Ernst
Published: April 2023

Supplementary Table and Figure Legends
Figure S4 from Neoadjuvant Chemotherapy Induces Genomic and Transcriptomic Changes in Ovarian Cancer
Authors: Javellana Melissa , Eckert Mark A. , Heide Janna , Zawieracz Katarzyna , Weigert Melanie , Ashley Sarah , Stock Elizabeth , Chapel David , Huang Lei , Yamada S. Diane , Ahmed Ahmed Ashour , Lastra Ricardo R. , Chen Mengjie , Lengyel Ernst
Published: April 2023

Supplementary Figure 4
Supplementary Table 4 from Reorganization of the 3D Genome Pinpoints Noncoding Drivers of Primary Prostate Tumors
Authors: Hawley James R. , Zhou Stanley , Arlidge Christopher , Grillo Giacomo , Kron Ken J. , Hugh-White Rupert , van der Kwast Theodorus H. , Fraser Michael , Boutros Paul C. , Bristow Robert G. , Lupien Mathieu
Published: April 2023

Individual TAD calls in all 12 tumour and 5 benign samples.
Figure S3 from Neoadjuvant Chemotherapy Induces Genomic and Transcriptomic Changes in Ovarian Cancer
Authors: Javellana Melissa , Eckert Mark A. , Heide Janna , Zawieracz Katarzyna , Weigert Melanie , Ashley Sarah , Stock Elizabeth , Chapel David , Huang Lei , Yamada S. Diane , Ahmed Ahmed Ashour , Lastra Ricardo R. , Chen Mengjie , Lengyel Ernst
Published: April 2023

Supplementary Figure 3
Figure S2 from Neoadjuvant Chemotherapy Induces Genomic and Transcriptomic Changes in Ovarian Cancer
Authors: Javellana Melissa , Eckert Mark A. , Heide Janna , Zawieracz Katarzyna , Weigert Melanie , Ashley Sarah , Stock Elizabeth , Chapel David , Huang Lei , Yamada S. Diane , Ahmed Ahmed Ashour , Lastra Ricardo R. , Chen Mengjie , Lengyel Ernst
Published: April 2023

Supplementary Figure 2
Supplementary Table from Thymosin α-1 Reverses M2 Polarization of Tumor-Associated Macrophages during Efferocytosis
Authors: Wei Yi-ting , Wang Xu-ru , Yan Chunguang , Huang Fang , Zhang Yunpeng , Liu Xueming , Wen Zhi-fa , Sun Xiao-tong , Zhang Yue , Chen Yong-qiang , Gao Rong , Pan Ning , Wang Li-xin
Published: April 2023

Supplementary Table from Thymosin α-1 Reverses M2 Polarization of Tumor-Associated Macrophages during Efferocytosis
Supplementary Figure from Thymosin α-1 Reverses M2 Polarization of Tumor-Associated Macrophages during Efferocytosis
Authors: Wei Yi-ting , Wang Xu-ru , Yan Chunguang , Huang Fang , Zhang Yunpeng , Liu Xueming , Wen Zhi-fa , Sun Xiao-tong , Zhang Yue , Chen Yong-qiang , Gao Rong , Pan Ning , Wang Li-xin
Published: April 2023

Supplementary Figure from Thymosin α-1 Reverses M2 Polarization of Tumor-Associated Macrophages during Efferocytosis
Supplementary Table 3 from Reorganization of the 3D Genome Pinpoints Noncoding Drivers of Primary Prostate Tumors
Authors: Hawley James R. , Zhou Stanley , Arlidge Christopher , Grillo Giacomo , Kron Ken J. , Hugh-White Rupert , van der Kwast Theodorus H. , Fraser Michael , Boutros Paul C. , Bristow Robert G. , Lupien Mathieu
Published: April 2023

Summary statistics for TAD counts in all 12 tumour and 5 benign samples, across multiple window sizes.
Supplementary Table 2 from Reorganization of the 3D Genome Pinpoints Noncoding Drivers of Primary Prostate Tumors
Authors: Hawley James R. , Zhou Stanley , Arlidge Christopher , Grillo Giacomo , Kron Ken J. , Hugh-White Rupert , van der Kwast Theodorus H. , Fraser Michael , Boutros Paul C. , Bristow Robert G. , Lupien Mathieu
Published: April 2023

Sequencing metrics as calculated by HiCUP for all Hi-C libraries generated in this study.
Table S2 from Inhibition of XPO1 Sensitizes Small Cell Lung Cancer to First- and Second-Line Chemotherapy
Authors: Quintanal-Villalonga Alvaro , Taniguchi Hirokazu , Hao Yuan , Chow Andrew , Zhan Yingqian A. , Chavan Shweta S. , Uddin Fathema , Allaj Viola , Manoj Parvathy , Shah Nisargbhai S. , Chan Joseph M. , Offin Michael , Ciampricotti Metamia , Ray-Kirton Jordana , Egger Jacklynn , Bhanot Umesh , Linkov Irina , Asher Marina , Roehrl Michael H. , Qiu Juan , de Stanchina Elisa , Hollmann Travis J. , Koche Richard P. , Sen Triparna , Poirier John T. , Rudin Charles M.
Published: April 2023

Subtype information
Supplementary Figure 6 from Reorganization of the 3D Genome Pinpoints Noncoding Drivers of Primary Prostate Tumors
Authors: Hawley James R. , Zhou Stanley , Arlidge Christopher , Grillo Giacomo , Kron Ken J. , Hugh-White Rupert , van der Kwast Theodorus H. , Fraser Michael , Boutros Paul C. , Bristow Robert G. , Lupien Mathieu
Published: April 2023

Assembly of structural variants involving enhancer-hijacking events.
Figures S1 - S5 from Inhibition of XPO1 Sensitizes Small Cell Lung Cancer to First- and Second-Line Chemotherapy
Authors: Quintanal-Villalonga Alvaro , Taniguchi Hirokazu , Hao Yuan , Chow Andrew , Zhan Yingqian A. , Chavan Shweta S. , Uddin Fathema , Allaj Viola , Manoj Parvathy , Shah Nisargbhai S. , Chan Joseph M. , Offin Michael , Ciampricotti Metamia , Ray-Kirton Jordana , Egger Jacklynn , Bhanot Umesh , Linkov Irina , Asher Marina , Roehrl Michael H. , Qiu Juan , de Stanchina Elisa , Hollmann Travis J. , Koche Richard P. , Sen Triparna , Poirier John T. , Rudin Charles M.
Published: April 2023

Supplementary Figures
Supplementary Figure 4 from Reorganization of the 3D Genome Pinpoints Noncoding Drivers of Primary Prostate Tumors
Authors: Hawley James R. , Zhou Stanley , Arlidge Christopher , Grillo Giacomo , Kron Ken J. , Hugh-White Rupert , van der Kwast Theodorus H. , Fraser Michael , Boutros Paul C. , Bristow Robert G. , Lupien Mathieu
Published: April 2023

Structural variant detection from Hi-C data.
Supplementary Data from Targeting Squalene Epoxidase Interrupts Homologous Recombination via the ER Stress Response and Promotes Radiotherapy Efficacy
Authors: Hong Zhipeng , Liu Tao , Wan Lingfeng , Fa Pengyan , Kumar Pankaj , Cao Yanan , Prasad Chandra Bhushan , Qiu Zhaojun , Liu Joseph , Wang Hongbing , Li Zaibo , Wang Qi-En , Guo Peixuan , Guo Deliang , Yilmaz Ayse S. , Lu Lanchun , Papandreou Ioanna , Jacob Naduparambil K. , Yan Chunhong , Zhang Xiaoli , She Qing-Bai , Ma Zhefu , Zhang Junran
Published: April 2023

Supplementary Data from Targeting Squalene Epoxidase Interrupts Homologous Recombination via the ER Stress Response and Promotes Radiotherapy Efficacy
Supplementary Data from Reorganization of the 3D Genome Pinpoints Noncoding Drivers of Primary Prostate Tumors
Authors: Hawley James R. , Zhou Stanley , Arlidge Christopher , Grillo Giacomo , Kron Ken J. , Hugh-White Rupert , van der Kwast Theodorus H. , Fraser Michael , Boutros Paul C. , Bristow Robert G. , Lupien Mathieu
Published: April 2023

Supplementary Figures and descriptions for Supplementary Tables
Supplementary Data from JNK Signaling Promotes Bladder Cancer Immune Escape by Regulating METTL3-Mediated m6A Modification of PD-L1 mRNA
Authors: Ni Zegui , Sun Pengli , Zheng Jin , Wu Mingqing , Yang Congcong , Cheng Maosheng , Yin Mingwei , Cui Chengying , Wang Guangxian , Yuan Lin , Gao Qian , Li Yang
Published: April 2023

Supplementary Data from JNK Signaling Promotes Bladder Cancer Immune Escape by Regulating METTL3-Mediated m6A Modification of PD-L1 mRNA
Supplementary Table 2 from Plasticity in the Absence of NOTCH Uncovers a RUNX2-Dependent Pathway in Small Cell Lung Cancer
Authors: Hong Deli , Knelson Erik H. , Li Yixiang , Durmaz Yavuz T. , Gao Wenhua , Walton Emily , Vajdi Amir , Thai Tran , Sticco-Ivins Maura , Sabet Amin H. , Jones Kristen L. , Schinzel Anna C. , Bronson Rod T. , Nguyen Quang-De , Tolstorukov Michael Y. , Vivero Marina , Signoretti Sabina , Barbie David A. , Oser Matthew G.
Published: April 2023

GSEA Hallmarks analysis of RNA-seq of bulk lung tumors
Supplementary Table 3 from EGFR Inhibition Enhances the Cellular Uptake and Antitumor-Activity of the HER3 Antibody–Drug Conjugate HER3–DXd
Authors: Haikala Heidi M. , Lopez Timothy , Köhler Jens , Eser Pinar O. , Xu Man , Zeng Qing , Teceno Tyler J. , Ngo Kenneth , Zhao Yutong , Ivanova Elena V. , Bertram Arrien A. , Leeper Brittaney A. , Chambers Emily S. , Adeni Anika E. , Taus Luke J. , Kuraguchi Mari , Kirschmeier Paul T. , Yu Channing , Shiose Yoshinobu , Kamai Yasuki , Qiu Yang , Paweletz Cloud P. , Gokhale Prafulla C. , Jänne Pasi A.
Published: April 2023

Allelic Frequencies in PC-9 vs PC-9 T790M/C797S cells.
Supplementary Data from Plasticity in the Absence of NOTCH Uncovers a RUNX2-Dependent Pathway in Small Cell Lung Cancer
Authors: Hong Deli , Knelson Erik H. , Li Yixiang , Durmaz Yavuz T. , Gao Wenhua , Walton Emily , Vajdi Amir , Thai Tran , Sticco-Ivins Maura , Sabet Amin H. , Jones Kristen L. , Schinzel Anna C. , Bronson Rod T. , Nguyen Quang-De , Tolstorukov Michael Y. , Vivero Marina , Signoretti Sabina , Barbie David A. , Oser Matthew G.
Published: April 2023

Supplementary Data including supplementary methods, supplementary figures, and supplementary figure legends.
Supplementary Table 1 from EGFR Inhibition Enhances the Cellular Uptake and Antitumor-Activity of the HER3 Antibody–Drug Conjugate HER3–DXd
Authors: Haikala Heidi M. , Lopez Timothy , Köhler Jens , Eser Pinar O. , Xu Man , Zeng Qing , Teceno Tyler J. , Ngo Kenneth , Zhao Yutong , Ivanova Elena V. , Bertram Arrien A. , Leeper Brittaney A. , Chambers Emily S. , Adeni Anika E. , Taus Luke J. , Kuraguchi Mari , Kirschmeier Paul T. , Yu Channing , Shiose Yoshinobu , Kamai Yasuki , Qiu Yang , Paweletz Cloud P. , Gokhale Prafulla C. , Jänne Pasi A.
Published: April 2023

Antibodies used in the study
Supplementary Information from Oncogenic circRNA C190 Promotes Non–Small Cell Lung Cancer via Modulation of the EGFR/ERK Pathway
Authors: Ishola Afeez Adekunle , Chien Chian-Shiu , Yang Yi-Ping , Chien Yueh , Yarmishyn Aliaksandr A. , Tsai Ping-Hsing , Chen Jerry Chieh-Yu , Hsu Po-Kuei , Luo Yung-Hung , Chen Yuh-Min , Liang Kung-Hou , Lan Yuan-Tzu , Huo Teh-Ia , Ma Hsin-I. , Chen Ming-Teh , Wang Mong-Lien , Chiou Shih-Hwa
Published: April 2023

Supplementary materials and methods, supplementary tables, and supplementary figures to support the main manuscript
Supplementary Materials from Inhibition of PIM Kinases in DLBCL Targets MYC Transcriptional Program and Augments the Efficacy of Anti-CD20 Antibodies
Authors: Szydłowski Maciej , Garbicz Filip , Jabłońska Ewa , Górniak Patryk , Komar Dorota , Pyrzyńska Beata , Bojarczuk Kamil , Prochorec-Sobieszek Monika , Szumera-Ciećkiewicz Anna , Rymkiewicz Grzegorz , Cybulska Magdalena , Statkiewicz Małgorzata , Gajewska Marta , Mikula Michał , Gołas Aniela , Domagała Joanna , Winiarska Magdalena , Graczyk-Jarzynka Agnieszka , Białopiotrowicz Emilia , Polak Anna , Barankiewicz Joanna , Puła Bartosz , Pawlak Michał , Nowis Dominika , Golab Jakub , Tomirotti Andrea M. , Brzózka Krzysztof , Pacheco-Blanco Mariana , Kupcova Kristyna , Green Michael R. , Havranek Ondrej , Chapuy Bjoern , Juszczyński Przemysław
Published: April 2023

Supplemental Materials
Supplementary Table from LncRNA Uc003xsl.1-Mediated Activation of the NFκB/IL8 Axis Promotes Progression of Triple-Negative Breast Cancer
Authors: Xu Ying , Ren Wei , Li Qingjian , Duan Chaohui , Lin Xiaorong , Bi Zhuofei , You Kaiyun , Hu Qian , Xie Ning , Yu Yunfang , Xu Xiaoding , Hu Hai , Yao Herui
Published: April 2023

Supplementary Table from LncRNA Uc003xsl.1-Mediated Activation of the NFκB/IL8 Axis Promotes Progression of Triple-Negative Breast Cancer
Supplementary Figure from LncRNA Uc003xsl.1-Mediated Activation of the NFκB/IL8 Axis Promotes Progression of Triple-Negative Breast Cancer
Authors: Xu Ying , Ren Wei , Li Qingjian , Duan Chaohui , Lin Xiaorong , Bi Zhuofei , You Kaiyun , Hu Qian , Xie Ning , Yu Yunfang , Xu Xiaoding , Hu Hai , Yao Herui
Published: April 2023

Supplementary Figure from LncRNA Uc003xsl.1-Mediated Activation of the NFκB/IL8 Axis Promotes Progression of Triple-Negative Breast Cancer
Supplementary Table from EIF4A3-Induced circARHGAP29 Promotes Aerobic Glycolysis in Docetaxel-Resistant Prostate Cancer through IGF2BP2/c-Myc/LDHA Signaling
Authors: Jiang Xingkang , Guo Shanqi , Wang Shuo , Zhang Yangyi , Chen Haojie , Wang Yong , Liu Ranlu , Niu Yuanjie , Xu Yong
Published: April 2023

Supplementary Table from EIF4A3-Induced circARHGAP29 Promotes Aerobic Glycolysis in Docetaxel-Resistant Prostate Cancer through IGF2BP2/c-Myc/LDHA Signaling
Supplementary Data from Integrated Molecular Characterization of Patient-Derived Models Reveals Therapeutic Strategies for Treating CIC-DUX4 Sarcoma
Authors: Carrabotta Marianna , Laginestra Maria Antonella , Durante Giorgio , Mancarella Caterina , Landuzzi Lorena , Parra Alessandro , Ruzzi Francesca , Toracchio Lisa , De Feo Alessandra , Giusti Veronica , Pasello Michela , Righi Alberto , Lollini Pier-Luigi , Palmerini Emanuela , Donati Davide Maria , Manara Maria Cristina , Scotlandi Katia
Published: April 2023

Supplementary Data from Integrated Molecular Characterization of Patient-Derived Models Reveals Therapeutic Strategies for Treating CIC-DUX4 Sarcoma
Supplementary Data from EBV Infection in Epithelial Malignancies Induces Resistance to Antitumor Natural Killer Cells via F3-Mediated Platelet Aggregation
Authors: Duan Xiaobing , Chen Haiwen , Zhou Xiang , Liu Pingjuan , Zhang Xiao , Zhu Qian , Zhong Ling , Zhang Wanlin , Zhang Shanshan , Zhang Xinyu , Chen Yanhong , Zhou Yan , Yang Chaopin , Feng Qisheng , Zeng Yi-Xin , Xu Miao , Xiang Tong
Published: April 2023

Supplementary Data from EBV Infection in Epithelial Malignancies Induces Resistance to Antitumor Natural Killer Cells via F3-Mediated Platelet Aggregation
Supplementary Video 1 from Novel Mouse Models of Bladder Cancer Identify a Prognostic Signature Associated with Risk of Disease Progression
Authors: Park Soonbum , Rong Lijie , Owczarek Tomasz B. , Bernardo Matteo Di , Shoulson Rivka L. , Chua Chee-Wai , Kim Jaime Y. , Lankarani Amir , Chakrapani Prithi , Syed Talal , McKiernan James M. , Solit David B. , Shen Michael M. , Al-Ahmadie Hikmat A. , Abate-Shen Cory
Published: April 2023

Video of mouse surgical procedures for delivery of Adenovirus into the bladder lumen.
Supplementary Data from Disrupting Circadian Rhythm via the PER1–HK2 Axis Reverses Trastuzumab Resistance in Gastric Cancer
Authors: Wang Jiao , Huang Qiong , Hu Xingbin , Zhang Shuyi , Jiang Yu , Yao Guangyu , Hu Kongzhen , Xu Xin , Liang Bishan , Wu Qijing , Ma Zhenfeng , Wang Yawen , Wang Chunlin , Wu Zhenzhen , Rong Xiaoxiang , Liao Wangjun , Shi Min
Published: April 2023

Supplementary Data from Disrupting Circadian Rhythm via the PER1–HK2 Axis Reverses Trastuzumab Resistance in Gastric Cancer
Supplementary Dataset from Novel Mouse Models of Bladder Cancer Identify a Prognostic Signature Associated with Risk of Disease Progression
Authors: Park Soonbum , Rong Lijie , Owczarek Tomasz B. , Bernardo Matteo Di , Shoulson Rivka L. , Chua Chee-Wai , Kim Jaime Y. , Lankarani Amir , Chakrapani Prithi , Syed Talal , McKiernan James M. , Solit David B. , Shen Michael M. , Al-Ahmadie Hikmat A. , Abate-Shen Cory
Published: April 2023

Supplementary of differential gene expression and pathway analyses
Supplementary Data from Transient Inhibition of the JAK/STAT Pathway Prevents B-ALL Development in Genetically Predisposed Mice
Authors: Casado-García Ana , Isidro-Hernández Marta , Oak Ninad , Mayado Andrea , Mann-Ran Christine , Raboso-Gallego Javier , Alemán-Arteaga Silvia , Buhles Alexandra , Sterker Dario , Sánchez Elena G. , Martínez-Cano Jorge , Blanco Oscar , Orfao Alberto , Alonso-López Diego , De Las Rivas Javier , Riesco Susana , Prieto-Matos Pablo , González-Murillo África , García Criado Francisco Javier , García Cenador María Begoña , Radimerski Thomas , Ramírez-Orellana Manuel , Cobaleda César , Yang Jun J. , Vicente-Dueñas Carolina , Weiss Andreas , Nichols Kim E. , Sánchez-García Isidro
Published: April 2023

Supplementary Data from Transient Inhibition of the JAK/STAT Pathway Prevents B-ALL Development in Genetically Predisposed Mice
Supplementary Data from TET2 Suppresses VHL Deficiency-Driven Clear Cell Renal Cell Carcinoma by Inhibiting HIF Signaling
Authors: Zhang Xinchao , Li Shuyan , He Jing , Jin Yunjie , Zhang Ruonan , Dong Wenjing , Lin Mingen , Yang Yajing , Tian Tongguan , Zhou Yuefan , Xu Yixin , Lei Qun-Ying , Zhang Jing , Zhang Qing , Xu Yanping , Lv Lei
Published: April 2023

Supplementary Data from TET2 Suppresses VHL Deficiency-Driven Clear Cell Renal Cell Carcinoma by Inhibiting HIF Signaling
Figure S5 from Genomic and Transcriptomic Analysis of Relapsed and Refractory Childhood Solid Tumors Reveals a Diverse Molecular Landscape and Mechanisms of Immune Evasion
Authors: Byron Sara A. , Hendricks William P.D. , Nagulapally Abhinav B. , Kraveka Jacqueline M. , Ferguson William S. , Brown Valerie I. , Eslin Don E. , Mitchell Deanna , Cornelius Albert , Roberts William , Isakoff Michael S. , Oesterheld Javier E. , Wada Randal K. , Rawwas Jawhar , Neville Kathleen , Zage Peter E. , Harrod Virginia L. , Bergendahl Genevieve , VanSickle Elizabeth , Dykema Karl , Bond Jeffrey , Chou Hsien-Chao , Wei Jun S. , Wen Xinyu , Reardon Hue V. , Roos Alison , Nasser Sara , Izatt Tyler , Enriquez Daniel , Hegde Apurva M. , Cisneros Faith , Christofferson Austin , Turner Bryce , Szelinger Szabolcs , Keats Jonathan J. , Halperin Rebecca F. , Khan Javed , Saulnier Sholler Giselle L. , Trent Jeffrey M.
Published: April 2023

Consensus Matrix of the GSVA Enrichment Scores Computed for 50 Hallmark Gene Sets. xCell Immune Score Values by GSVA Cluster.
Figure S2 from Genomic and Transcriptomic Analysis of Relapsed and Refractory Childhood Solid Tumors Reveals a Diverse Molecular Landscape and Mechanisms of Immune Evasion
Authors: Byron Sara A. , Hendricks William P.D. , Nagulapally Abhinav B. , Kraveka Jacqueline M. , Ferguson William S. , Brown Valerie I. , Eslin Don E. , Mitchell Deanna , Cornelius Albert , Roberts William , Isakoff Michael S. , Oesterheld Javier E. , Wada Randal K. , Rawwas Jawhar , Neville Kathleen , Zage Peter E. , Harrod Virginia L. , Bergendahl Genevieve , VanSickle Elizabeth , Dykema Karl , Bond Jeffrey , Chou Hsien-Chao , Wei Jun S. , Wen Xinyu , Reardon Hue V. , Roos Alison , Nasser Sara , Izatt Tyler , Enriquez Daniel , Hegde Apurva M. , Cisneros Faith , Christofferson Austin , Turner Bryce , Szelinger Szabolcs , Keats Jonathan J. , Halperin Rebecca F. , Khan Javed , Saulnier Sholler Giselle L. , Trent Jeffrey M.
Published: April 2023

Neoantigen Landscape in Relapsed and Refractory Childhood Solid Tumors.
Supplementary Data from A Novel HER2-Selective Kinase Inhibitor Is Effective in HER2 Mutant and Amplified Non–Small Cell Lung Cancer
Authors: Son Jieun , Jang Jaebong , Beyett Tyler S. , Eum Yoonji , Haikala Heidi M. , Verano Alyssa , Lin Mika , Hatcher John M. , Kwiatkowski Nicholas P. , Eser Pinar Ö. , Poitras Michael J. , Wang Stephen , Xu Man , Gokhale Prafulla C. , Cameron Michael D. , Eck Michael J. , Gray Nathanael S. , Jänne Pasi A.
Published: April 2023

Supplementary Data from A Novel HER2-Selective Kinase Inhibitor Is Effective in HER2 Mutant and Amplified Non–Small Cell Lung Cancer
Supplementary Table from Prostaglandin Pathways: Opportunities for Cancer Prevention and Therapy
Authors: Wang Qiushi , Morris Rebecca J. , Bode Ann M. , Zhang Tianshun
Published: April 2023

Supplementary Table from Prostaglandin Pathways: Opportunities for Cancer Prevention and Therapy
Supplementary Data from Genome-Wide Association Analyses Identify CATSPERE as a Mediator of Colorectal Cancer Susceptibility and Progression
Authors: Meng Yixuan , Du Mulong , Gu Dongying , Li Chen , Li Shuwei , Zhang Qiuyi , Ben Shuai , Zhu Qiuyuan , Xin Junyi , Zhang Zhengdong , Hu Zhibin , Shen Hongbing , Jiang Kewei , Wang Meilin
Published: April 2023

Supplementary Data from Genome-Wide Association Analyses Identify CATSPERE as a Mediator of Colorectal Cancer Susceptibility and Progression
Supplementary Data from CDK4/6 Inhibition Suppresses p73 Phosphorylation and Activates DR5 to Potentiate Chemotherapy and Immune Checkpoint Blockade
Authors: Tong Jingshan , Tan Xiao , Song Xiangping , Gao Man , Risnik Denise , Hao Suisui , Ermine Kaylee , Wang Peng , Li Hua , Huang Yi , Yu Jian , Zhang Lin
Published: April 2023

Supplementary Data from CDK4/6 Inhibition Suppresses p73 Phosphorylation and Activates DR5 to Potentiate Chemotherapy and Immune Checkpoint Blockade
Supplementary Table from A Pan-Cancer Immunogenomic Atlas for Immune Checkpoint Blockade Immunotherapy
Authors: Yang Jing , Zhao Shilin , Wang Jing , Sheng Quanhu , Liu Qi , Shyr Yu
Published: April 2023

Supplementary Table from A Pan-Cancer Immunogenomic Atlas for Immune Checkpoint Blockade Immunotherapy
Supplementary Table from Leveraging Allele-Specific Expression for Therapeutic Response Gene Discovery in Glioblastoma
Authors: Sen Arko , Prager Briana C. , Zhong Cuiqing , Park Donglim , Zhu Zhe , Gimple Ryan C. , Wu Qiulian , Bernatchez Jean A. , Beck Sungjun , Clark Alex E. , Siqueira-Neto Jair L. , Rich Jeremy N. , McVicker Graham
Published: April 2023

Supplementary Table from Leveraging Allele-Specific Expression for Therapeutic Response Gene Discovery in Glioblastoma
Supplementary Data from In Vivo Modeling of Patient Genetic Heterogeneity Identifies New Ways to Target Cholangiocarcinoma
Authors: Younger Nicholas T. , Wilson Mollie L. , Martinez Lyons Anabel , Jarman Edward J. , Meynert Alison M. , Grimes Graeme R. , Gournopanos Konstantinos , Waddell Scott H. , Tennant Peter A. , Wilson David H. , Guest Rachel V. , Wigmore Stephen J. , Acosta Juan Carlos , Kendall Timothy J. , Taylor Martin S. , Sproul Duncan , Mill Pleasantine , Boulter Luke
Published: April 2023

Supplementary Data from In Vivo Modeling of Patient Genetic Heterogeneity Identifies New Ways to Target Cholangiocarcinoma
Supplementary Table from Mapping the Immune Landscape in Metastatic Melanoma Reveals Localized Cell–Cell Interactions That Predict Immunotherapy Response
Authors: Antoranz Asier , Van Herck Yannick , Bolognesi Maddalena M. , Lynch Seodhna M. , Rahman Arman , Gallagher William M. , Boecxstaens Veerle , Marine Jean-Christophe , Cattoretti Giorgio , van den Oord Joost J. , De Smet Frederik , Bechter Oliver , Bosisio Francesca M.
Published: April 2023

Supplementary Table from Mapping the Immune Landscape in Metastatic Melanoma Reveals Localized Cell–Cell Interactions That Predict Immunotherapy Response
Supplementary Data from PRC2 Heterogeneity Drives Tumor Growth in Medulloblastoma
Authors: Yi Jiaqing , Kim BongWoo , Shi Xuanming , Zhan Xiaoming , Lu Q. Richard , Xuan Zhenyu , Wu Jiang
Published: April 2023

Supplementary Data from PRC2 Heterogeneity Drives Tumor Growth in Medulloblastoma
Supplementary Data from Mitochondrial Micropeptide STMP1 Enhances Mitochondrial Fission to Promote Tumor Metastasis
Authors: Xie Chen , Wang Feng-Yi , Sang Ye , Chen Bin , Huang Jia-Hui , He Feng-Jun , Li Hui , Zhu Ying , Liu Xingguo , Zhuang Shi-Mei , Fang Jian-Hong
Published: April 2023

Supplementary Data from Mitochondrial Micropeptide STMP1 Enhances Mitochondrial Fission to Promote Tumor Metastasis
Supplementary Data from The Interaction of SWI/SNF with the Ribosome Regulates Translation and Confers Sensitivity to Translation Pathway Inhibitors in Cancers with Complex Perturbations
Authors: Ulicna Livia , Kimmey Samuel C. , Weber Christopher M. , Allard Grace M. , Wang Aihui , Bui Nam Q. , Bendall Sean C. , Crabtree Gerald R. , Bean Gregory R. , Van Rechem Capucine
Published: April 2023

Supplementary Data from The Interaction of SWI/SNF with the Ribosome Regulates Translation and Confers Sensitivity to Translation Pathway Inhibitors in Cancers with Complex Perturbations
Supplementary Figure from Targeting Plk1 Sensitizes Pancreatic Cancer to Immune Checkpoint Therapy
Authors: Zhang Zhuangzhuang , Cheng Lijun , Li Jie , Qiao Qi , Karki Anju , Allison Derek B. , Shaker Nuha , Li Kunyu , Utturkar Sagar M. , Atallah Lanman Nadia M. , Rao Xiongjian , Rychahou Piotr , He Daheng , Konieczny Stephen F. , Wang Chi , Shao Qing , Evers B. Mark , Liu Xiaoqi
Published: April 2023

Supplementary Figure from Targeting Plk1 Sensitizes Pancreatic Cancer to Immune Checkpoint Therapy
Supplementary Figure from CHD1 Promotes Sensitivity to Aurora Kinase Inhibitors by Suppressing Interaction of AURKA with Its Coactivator TPX2
Authors: Li Haoyan , Wang Yin , Lin Kevin , Venkadakrishnan Varadha Balaji , Bakht Martin , Shi Wei , Meng Chenling , Zhang Jie , Tremble Kaitlyn , Liang Xin , Song Jian H. , Feng Xu , Van Vivien , Deng Pingna , Burks Jared K. , Aparicio Ana , Keyomarsi Khandan , Chen Junjie , Lu Yue , Beltran Himisha , Zhao Di
Published: April 2023

Supplementary Figure from CHD1 Promotes Sensitivity to Aurora Kinase Inhibitors by Suppressing Interaction of AURKA with Its Coactivator TPX2
Supplementary Data from CHD1 Promotes Sensitivity to Aurora Kinase Inhibitors by Suppressing Interaction of AURKA with Its Coactivator TPX2
Authors: Li Haoyan , Wang Yin , Lin Kevin , Venkadakrishnan Varadha Balaji , Bakht Martin , Shi Wei , Meng Chenling , Zhang Jie , Tremble Kaitlyn , Liang Xin , Song Jian H. , Feng Xu , Van Vivien , Deng Pingna , Burks Jared K. , Aparicio Ana , Keyomarsi Khandan , Chen Junjie , Lu Yue , Beltran Himisha , Zhao Di
Published: April 2023

Supplementary Data from CHD1 Promotes Sensitivity to Aurora Kinase Inhibitors by Suppressing Interaction of AURKA with Its Coactivator TPX2
Supplementary Data from Asialoglycoprotein Receptor 1 Functions as a Tumor Suppressor in Liver Cancer via Inhibition of STAT3
Authors: Zhu Xingxin , Song Guangyuan , Zhang Shiyu , Chen Jun , Hu Xiaoyi , Zhu Hai , Jia Xing , Li Zequn , Song Wenfeng , Chen Jian , Jin Cheng , Zhou Mengqiao , Zhao Yongchao , Xie Haiyang , Zheng Shusen , Song Penghong
Published: April 2023

Supplementary Data from Asialoglycoprotein Receptor 1 Functions as a Tumor Suppressor in Liver Cancer via Inhibition of STAT3
Supplementary Data from GOT2 Silencing Promotes Reprogramming of Glutamine Metabolism and Sensitizes Hepatocellular Carcinoma to Glutaminase Inhibitors
Authors: Li Yunzheng , Li Binghua , Xu Yanchao , Qian Liyuan , Xu Tiancheng , Meng Gang , Li Huan , Wang Ye , Zhang Laizhu , Jiang Xiang , Liu Qi , Xie Yuanyuan , Cheng Chunxiao , Sun Beicheng , Yu Decai
Published: April 2023

Supplementary Data from GOT2 Silencing Promotes Reprogramming of Glutamine Metabolism and Sensitizes Hepatocellular Carcinoma to Glutaminase Inhibitors
Supplementary Table from A First-in-Class Inhibitor of ER Coregulator PELP1 Targets ER+ Breast Cancer
Authors: Altwegg Kristin A. , Viswanadhapalli Suryavathi , Mann Monica , Chakravarty Dimple , Krishnan Samaya , Liu Zexuan , Liu Junhao , Pratap Uday P. , Ebrahimi Behnam , Sanchez John R. , Li Xiaonan , Ma Shihong , Park Ben H. , Santhamma Bindu , Chen Yidong , Lai Zhao , Raj Ganesh V. , Yuan Yaxia , Zhou Daohong , Sareddy Gangadhara R. , Tekmal Rajeshwar R. , McHardy Stan , Huang Tim H.-M. , Rao Manjeet K. , Vankayalapati Hariprasad , Vadlamudi Ratna K.
Published: April 2023

Supplementary Table from A First-in-Class Inhibitor of ER Coregulator PELP1 Targets ER+ Breast Cancer
Supplementary Figure from Single-Cell Transcriptome Profiling Reveals Intratumoral Heterogeneity and Molecular Features of Ductal Carcinoma In Situ
Authors: Tokura Momoko , Nakayama Jun , Prieto-Vila Marta , Shiino Sho , Yoshida Masayuki , Yamamoto Tomofumi , Watanabe Naoaki , Takayama Shin , Suzuki Yutaka , Okamoto Koji , Ochiya Takahiro , Kohno Takashi , Yatabe Yasushi , Suto Akihiko , Yamamoto Yusuke
Published: April 2023

Supplementary Figure from Single-Cell Transcriptome Profiling Reveals Intratumoral Heterogeneity and Molecular Features of Ductal Carcinoma In Situ
Supplementary Data from Single-Cell Transcriptome Profiling Reveals Intratumoral Heterogeneity and Molecular Features of Ductal Carcinoma In Situ
Authors: Tokura Momoko , Nakayama Jun , Prieto-Vila Marta , Shiino Sho , Yoshida Masayuki , Yamamoto Tomofumi , Watanabe Naoaki , Takayama Shin , Suzuki Yutaka , Okamoto Koji , Ochiya Takahiro , Kohno Takashi , Yatabe Yasushi , Suto Akihiko , Yamamoto Yusuke
Published: April 2023

Supplementary Data from Single-Cell Transcriptome Profiling Reveals Intratumoral Heterogeneity and Molecular Features of Ductal Carcinoma In Situ
Supplementary Table from A Distinct Chromatin State Drives Therapeutic Resistance in Invasive Lobular Breast Cancer
Authors: Nardone Agostina , Qiu Xintao , Spisak Sandor , Nagy Zsuzsanna , Feiglin Ariel , Feit Avery , Cohen Feit Gabriela , Xie Yingtian , Font-Tello Alba , Guarducci Cristina , Hermida-Prado Francisco , Syamala Sudeepa , Lim Klothilda , Munoz Gomez Miguel , Pun Matthew , Cornwell MacIntosh , Liu Weihan , Ors Aysegul , Mohammed Hisham , Cejas Paloma , Brock Jane B. , Freedman Matthew L. , Winer Eric P. , Fu Xiaoyong , Schiff Rachel , Long Henry W. , Metzger Filho Otto , Jeselsohn Rinath
Published: April 2023

Supplementary Table from A Distinct Chromatin State Drives Therapeutic Resistance in Invasive Lobular Breast Cancer
Supplementary Figure from Quantification of Neoantigen-Mediated Immunoediting in Cancer Evolution
Authors: Wu Tao , Wang Guangshuai , Wang Xuan , Wang Shixiang , Zhao Xiangyu , Wu Chenxu , Ning Wei , Tao Ziyu , Chen Fuxiang , Liu Xue-Song
Published: April 2023

Supplementary Figure from Quantification of Neoantigen-Mediated Immunoediting in Cancer Evolution
Supplementary Data from Dual Inhibition of CDK12/CDK13 Targets Both Tumor and Immune Cells in Ovarian Cancer
Authors: Cheng Lin , Zhou Shichao , Zhou Shaoqing , Shi Kaixuan , Cheng Yan , Cai Mei-Chun , Ye Kaiyan , Lin Lifeng , Zhang Zhenfeng , Jia Chenqiang , Xiang Huaijiang , Zang Jingyu , Zhang Meiying , Yin Xia , Li Ying , Di Wen , Zhuang Guanglei , Tan Li
Published: April 2023

Supplementary Data from Dual Inhibition of CDK12/CDK13 Targets Both Tumor and Immune Cells in Ovarian Cancer
Supplementary Table from DLGAP1-AS2–Mediated Phosphatidic Acid Synthesis Activates YAP Signaling and Confers Chemoresistance in Squamous Cell Carcinoma
Authors: Nan Yabing , Luo Qingyu , Wu Xiaowei , Liu Shi , Zhao Pengfei , Chang Wan , Zhou Aiping , Liu Zhihua
Published: April 2023

Supplementary Table from DLGAP1-AS2–Mediated Phosphatidic Acid Synthesis Activates YAP Signaling and Confers Chemoresistance in Squamous Cell Carcinoma
Supplementary Dataset S4 from Loss of NF1 in Melanoma Confers Sensitivity to SYK Kinase Inhibition
Authors: Abecunas Cara , Whitehead Christopher E. , Ziemke Elizabeth K. , Baumann Douglas G. , Frankowski-McGregor Christy L. , Sebolt-Leopold Judith S. , Fallahi-Sichani Mohammad
Published: April 2023

Supplementary Dataset S4
Supplementary Dataset S3 from Loss of NF1 in Melanoma Confers Sensitivity to SYK Kinase Inhibition
Authors: Abecunas Cara , Whitehead Christopher E. , Ziemke Elizabeth K. , Baumann Douglas G. , Frankowski-McGregor Christy L. , Sebolt-Leopold Judith S. , Fallahi-Sichani Mohammad
Published: April 2023

Supplementary Dataset S3
Supplementary Dataset Legends from Loss of NF1 in Melanoma Confers Sensitivity to SYK Kinase Inhibition
Authors: Abecunas Cara , Whitehead Christopher E. , Ziemke Elizabeth K. , Baumann Douglas G. , Frankowski-McGregor Christy L. , Sebolt-Leopold Judith S. , Fallahi-Sichani Mohammad
Published: April 2023

Supplementary Dataset Legends
Supplementary Data from Loss of LOXL2 Promotes Uterine Hypertrophy and Tumor Progression by Enhancing H3K36ac-Dependent Gene Expression
Authors: Lu Xufeng , Xin Dazhuan E. , Du Juanjuan K. , Zou Quanli C. , Wu Qian , Zhang Yanan S. , Deng Wenhai , Yue Jicheng , Fan Xing S. , Zeng Yuanyuan , Cheng Xiaju , Li Xue , Hou Zhaoyuan , Mohan Man , Zhao Ting C. , Lu Xiaomei , Chang Zhijie , Xu Liyan , Sun Yu , Zu Xiongbing , Zhang Yu , Chinn Y. Eugene
Published: April 2023

Supplementary information
Figure S.7 from Loss of LOXL2 Promotes Uterine Hypertrophy and Tumor Progression by Enhancing H3K36ac-Dependent Gene Expression
Authors: Lu Xufeng , Xin Dazhuan E. , Du Juanjuan K. , Zou Quanli C. , Wu Qian , Zhang Yanan S. , Deng Wenhai , Yue Jicheng , Fan Xing S. , Zeng Yuanyuan , Cheng Xiaju , Li Xue , Hou Zhaoyuan , Mohan Man , Zhao Ting C. , Lu Xiaomei , Chang Zhijie , Xu Liyan , Sun Yu , Zu Xiongbing , Zhang Yu , Chinn Y. Eugene
Published: April 2023

Figure S.7
Figure S.6 from Loss of LOXL2 Promotes Uterine Hypertrophy and Tumor Progression by Enhancing H3K36ac-Dependent Gene Expression
Authors: Lu Xufeng , Xin Dazhuan E. , Du Juanjuan K. , Zou Quanli C. , Wu Qian , Zhang Yanan S. , Deng Wenhai , Yue Jicheng , Fan Xing S. , Zeng Yuanyuan , Cheng Xiaju , Li Xue , Hou Zhaoyuan , Mohan Man , Zhao Ting C. , Lu Xiaomei , Chang Zhijie , Xu Liyan , Sun Yu , Zu Xiongbing , Zhang Yu , Chinn Y. Eugene
Published: April 2023

Figure S.6
Figure S.5 from Loss of LOXL2 Promotes Uterine Hypertrophy and Tumor Progression by Enhancing H3K36ac-Dependent Gene Expression
Authors: Lu Xufeng , Xin Dazhuan E. , Du Juanjuan K. , Zou Quanli C. , Wu Qian , Zhang Yanan S. , Deng Wenhai , Yue Jicheng , Fan Xing S. , Zeng Yuanyuan , Cheng Xiaju , Li Xue , Hou Zhaoyuan , Mohan Man , Zhao Ting C. , Lu Xiaomei , Chang Zhijie , Xu Liyan , Sun Yu , Zu Xiongbing , Zhang Yu , Chinn Y. Eugene
Published: April 2023

Figure S.5
Figure S.1 from Loss of LOXL2 Promotes Uterine Hypertrophy and Tumor Progression by Enhancing H3K36ac-Dependent Gene Expression
Authors: Lu Xufeng , Xin Dazhuan E. , Du Juanjuan K. , Zou Quanli C. , Wu Qian , Zhang Yanan S. , Deng Wenhai , Yue Jicheng , Fan Xing S. , Zeng Yuanyuan , Cheng Xiaju , Li Xue , Hou Zhaoyuan , Mohan Man , Zhao Ting C. , Lu Xiaomei , Chang Zhijie , Xu Liyan , Sun Yu , Zu Xiongbing , Zhang Yu , Chinn Y. Eugene
Published: April 2023

Figure S.1
Supplementary Data from Distinct Cell Adhesion Signature Defines Glioblastoma Myeloid-Derived Suppressor Cell Subsets
Authors: Bayik Defne , Bartels Cynthia F. , Lovrenert Katreya , Watson Dionysios C. , Zhang Duo , Kay Kristen , Lee Juyeun , Lauko Adam , Johnson Sadie , Lo Alice , Silver Daniel J. , McGraw Mary , Grabowski Matthew , Mohammadi Alireza M. , Veglia Filippo , Fan Yi , Vogelbaum Michael A. , Scacheri Peter , Lathia Justin D.
Published: April 2023

Supplementary Data from Distinct Cell Adhesion Signature Defines Glioblastoma Myeloid-Derived Suppressor Cell Subsets
Supplementary Table S4 from JAK–STAT Signaling in Inflammatory Breast Cancer Enables Chemotherapy-Resistant Cell States
Authors: Stevens Laura E. , Peluffo Guillermo , Qiu Xintao , Temko Daniel , Fassl Anne , Li Zheqi , Trinh Anne , Seehawer Marco , Jovanović Bojana , Alečković Maša , Wilde Callahan M. , Geck Renee C. , Shu Shaokun , Kingston Natalie L. , Harper Nicholas W. , Almendro Vanessa , Pyke Alanna L. , Egri Shawn B. , Papanastasiou Malvina , Clement Kendell , Zhou Ningxuan , Walker Sarah , Salas Jacqueline , Park So Yeon , Frank David A. , Meissner Alexander , Jaffe Jacob D. , Sicinski Piotr , Toker Alex , Michor Franziska , Long Henry W. , Overmoyer Beth A. , Polyak Kornelia
Published: April 2023

Supplementary Table S4
Supplementary Table S3 from JAK–STAT Signaling in Inflammatory Breast Cancer Enables Chemotherapy-Resistant Cell States
Authors: Stevens Laura E. , Peluffo Guillermo , Qiu Xintao , Temko Daniel , Fassl Anne , Li Zheqi , Trinh Anne , Seehawer Marco , Jovanović Bojana , Alečković Maša , Wilde Callahan M. , Geck Renee C. , Shu Shaokun , Kingston Natalie L. , Harper Nicholas W. , Almendro Vanessa , Pyke Alanna L. , Egri Shawn B. , Papanastasiou Malvina , Clement Kendell , Zhou Ningxuan , Walker Sarah , Salas Jacqueline , Park So Yeon , Frank David A. , Meissner Alexander , Jaffe Jacob D. , Sicinski Piotr , Toker Alex , Michor Franziska , Long Henry W. , Overmoyer Beth A. , Polyak Kornelia
Published: April 2023

Supplementary Table S3
Supplementary Table S2 from JAK–STAT Signaling in Inflammatory Breast Cancer Enables Chemotherapy-Resistant Cell States
Authors: Stevens Laura E. , Peluffo Guillermo , Qiu Xintao , Temko Daniel , Fassl Anne , Li Zheqi , Trinh Anne , Seehawer Marco , Jovanović Bojana , Alečković Maša , Wilde Callahan M. , Geck Renee C. , Shu Shaokun , Kingston Natalie L. , Harper Nicholas W. , Almendro Vanessa , Pyke Alanna L. , Egri Shawn B. , Papanastasiou Malvina , Clement Kendell , Zhou Ningxuan , Walker Sarah , Salas Jacqueline , Park So Yeon , Frank David A. , Meissner Alexander , Jaffe Jacob D. , Sicinski Piotr , Toker Alex , Michor Franziska , Long Henry W. , Overmoyer Beth A. , Polyak Kornelia
Published: April 2023

Supplementary Table S2
Supplementary Data from VRK1 Is a Synthetic–Lethal Target in VRK2-Deficient Glioblastoma
Authors: Shields Julie A. , Meier Samuel R. , Bandi Madhavi , Mulkearns-Hubert Erin E. , Hajdari Nicole , Ferdinez Maria Dam , Engel Justin L. , Silver Daniel J. , Shen Binzhang , Zhang Wenhai , Hubert Christopher G. , Mitchell Kelly , Shakya Sajina , Zhao Shan-Chuan , Bejnood Alborz , Zhang Minjie , Tjin Tham Sjin Robert , Wilker Erik , Lathia Justin D. , Andersen Jannik N. , Chen Yingnan , Li Fang , Weber Barbara , Huang Alan , Emmanuel Natasha
Published: April 2023

Supplementary Data from VRK1 Is a Synthetic–Lethal Target in VRK2-Deficient Glioblastoma
Figure S4 page2 from Combination Therapies with CDK4/6 Inhibitors to Treat KRAS-Mutant Pancreatic Cancer
Authors: Goodwin Craig M. , Waters Andrew M. , Klomp Jennifer E. , Javaid Sehrish , Bryant Kirsten L. , Stalnecker Clint A. , Drizyte-Miller Kristina , Papke Bjoern , Yang Runying , Amparo Amber M. , Ozkan-Dagliyan Irem , Baldelli Elisa , Calvert Valerie , Pierobon Mariaelena , Sorrentino Jessica A. , Beelen Andrew P. , Bublitz Natalie , Lüthen Mareen , Wood Kris C. , Petricoin Emanuel F. , Sers Christine , McRee Autumn J. , Cox Adrienne D. , Der Channing J.
Published: April 2023

Figure S4 page2
Figure S1 page1 from Combination Therapies with CDK4/6 Inhibitors to Treat KRAS-Mutant Pancreatic Cancer
Authors: Goodwin Craig M. , Waters Andrew M. , Klomp Jennifer E. , Javaid Sehrish , Bryant Kirsten L. , Stalnecker Clint A. , Drizyte-Miller Kristina , Papke Bjoern , Yang Runying , Amparo Amber M. , Ozkan-Dagliyan Irem , Baldelli Elisa , Calvert Valerie , Pierobon Mariaelena , Sorrentino Jessica A. , Beelen Andrew P. , Bublitz Natalie , Lüthen Mareen , Wood Kris C. , Petricoin Emanuel F. , Sers Christine , McRee Autumn J. , Cox Adrienne D. , Der Channing J.
Published: April 2023

Figure S1 page1
Supplementary Table from SMG8/SMG9 Heterodimer Loss Modulates SMG1 Kinase to Drive ATR Inhibitor Resistance
Authors: Llorca-Cardenosa Marta J. , Aronson Lauren I. , Krastev Dragomir B. , Nieminuszczy Jadwiga , Alexander John , Song Feifei , Dylewska Malgorzata , Broderick Ronan , Brough Rachel , Zimmermann Astrid , Zenke Frank T. , Gurel Bora , Riisnaes Ruth , Ferreira Ana , Roumeliotis Theodoros , Choudhary Jyoti , Pettitt Stephen J. , de Bono Johann , Cervantes Andres , Haider Syed , Niedzwiedz Wojciech , Lord Christopher J. , Chong Irene Y.
Published: April 2023

Supplementary Table from SMG8/SMG9 Heterodimer Loss Modulates SMG1 Kinase to Drive ATR Inhibitor Resistance
Supplementary Data from SMG8/SMG9 Heterodimer Loss Modulates SMG1 Kinase to Drive ATR Inhibitor Resistance
Authors: Llorca-Cardenosa Marta J. , Aronson Lauren I. , Krastev Dragomir B. , Nieminuszczy Jadwiga , Alexander John , Song Feifei , Dylewska Malgorzata , Broderick Ronan , Brough Rachel , Zimmermann Astrid , Zenke Frank T. , Gurel Bora , Riisnaes Ruth , Ferreira Ana , Roumeliotis Theodoros , Choudhary Jyoti , Pettitt Stephen J. , de Bono Johann , Cervantes Andres , Haider Syed , Niedzwiedz Wojciech , Lord Christopher J. , Chong Irene Y.
Published: April 2023

Supplementary Data from SMG8/SMG9 Heterodimer Loss Modulates SMG1 Kinase to Drive ATR Inhibitor Resistance
Supplementary materials from Single-Cell Analysis Reveals a CD4+ T-cell Cluster That Correlates with PD-1 Blockade Efficacy
Authors: Kagamu Hiroshi , Yamasaki Satoshi , Kitano Shigehisa , Yamaguchi Ou , Mouri Atsuto , Shiono Ayako , Nishihara Fuyumi , Miura Yu , Hashimoto Kosuke , Imai Hisao , Kaira Kyoichi , Kobayashi Kunihiko , Kanai Yae , Shibata Tatsuhiro , Horimoto Katsuhisa
Published: April 2023

Legends of Supplementary Figures and Tables, and Supplementary Methods.
Data file S4 from Targeting STAT5 Signaling Overcomes Resistance to IDH Inhibitors in Acute Myeloid Leukemia through Suppression of Stemness
Authors: Liu Alex C.H. , Cathelin Severine , Yang Yitong , Dai David L. , Ayyathan Dhanoop Manikoth , Hosseini Mohsen , Minden Mark D. , Tierens Anne , Chan Steven M.
Published: April 2023

STAT5 consensus binding motif around HOX genes
Data file S1 from Targeting STAT5 Signaling Overcomes Resistance to IDH Inhibitors in Acute Myeloid Leukemia through Suppression of Stemness
Authors: Liu Alex C.H. , Cathelin Severine , Yang Yitong , Dai David L. , Ayyathan Dhanoop Manikoth , Hosseini Mohsen , Minden Mark D. , Tierens Anne , Chan Steven M.
Published: April 2023

OCImIDH1N WES exonic nonsynonymous variants (DP>100)
Supplementary Text for: Genetic risk score Mendelian randomization shows that obesity measured as body mass index, but not waist:hip ratio, is causal for endometrial cancer from Genetic Risk Score Mendelian Randomization Shows that Obesity Measured as Body Mass Index, but not Waist:Hip Ratio, Is Causal for Endometrial Cancer
Authors: Painter Jodie N. , O'Mara Tracy A. , Marquart Louise , Webb Penelope M. , Attia John , Medland Sarah E. , Cheng Timothy , Dennis Joe , Holliday Elizabeth G. , McEvoy Mark , Scott Rodney J. , Ahmed Shahana , Healey Catherine S. , Shah Mitul , Gorman Maggie , Martin Lynn , Hodgson Shirley V. , Beckmann Matthias W. , Ekici Arif B. , Fasching Peter A. , Hein Alexander , Rübner Matthias , Czene Kamila , Darabi Hatef , Hall Per , Li Jingmei , Dörk Thilo , Dürst Matthias , Hillemanns Peter , Runnebaum Ingo B. , Amant Frederic , Annibali Daniela , Depreeuw Jeroen , Lambrechts Diether , Neven Patrick , Cunningham Julie M. , Dowdy Sean C. , Goode Ellen L. , Fridley Brooke L. , Winham Stacey J. , Njølstad Tormund S. , Salvesen Helga B. , Trovik Jone , Werner Henrica M.J. , Ashton Katie A. , Otton Geoffrey , Proietto Anthony , Mints Miriam , Tham Emma , Bolla Manjeet K. , Michailidou Kyriaki , Wang Qin , Tyrer Jonathan P. , Hopper John L. , Peto Julian , Swerdlow Anthony J. , Burwinkel Barbara , Brenner Hermann , Meindl Alfons , Brauch Hiltrud , Lindblom Annika , Chang-Claude Jenny , Couch Fergus J. , Giles Graham G. , Kristensen Vessela N. , Cox Angela , Pharoah Paul D.P. , Tomlinson Ian , Dunning Alison M. , Easton Douglas F. , Thompson Deborah J. , Spurdle Amanda B.
Published: April 2023

Supplementary Text for manuscript.
Supplementary Materials and Methods from Sex-Specific Associations of Arsenic Exposure with Global DNA Methylation and Hydroxymethylation in Leukocytes: Results from Two Studies in Bangladesh
Authors: Niedzwiecki Megan M. , Liu Xinhua , Hall Megan N. , Thomas Tiffany , Slavkovich Vesna , Ilievski Vesna , Levy Diane , Alam Shafiul , Siddique Abu B. , Parvez Faruque , Graziano Joseph H. , Gamble Mary V.
Published: April 2023

Detailed LC-MS/MS instrumentation settings for global %5-mC and %5-hmC analysis
Supplementary Figure 1 from Glomerular Function Time Trends in Long-Term Survivors of Childhood Cancer: A Longitudinal Study
Authors: Mulder Renée L. , Knijnenburg Sebastiaan L. , Geskus Ronald B. , van Dalen Elvira C. , van der Pal Helena J.H. , Koning Caro C.E. , Bouts Antonia H. , Caron Huib N. , Kremer Leontien C.M.
Published: April 2023

PDF - 81KB, Flowchart of childhood cancer survivors included in this study.
Supplemental Figure 3 from Prediagnostic Smoking Is Associated with Binary and Quantitative Measures of ER Protein and ESR1 mRNA Expression in Breast Tumors
Authors: Butler Eboneé N. , Bensen Jeannette T. , Chen Mengjie , Conway Kathleen , Richardson David B. , Sun Xuezheng , Geradts Joseph , Olshan Andrew F. , Troester Melissa A.
Published: April 2023

Supplemental Figure 3. The association between smoking and LS-defined breast cancer subtypes.
Supplemental Figure 2 from Prediagnostic Smoking Is Associated with Binary and Quantitative Measures of ER Protein and ESR1 mRNA Expression in Breast Tumors
Authors: Butler Eboneé N. , Bensen Jeannette T. , Chen Mengjie , Conway Kathleen , Richardson David B. , Sun Xuezheng , Geradts Joseph , Olshan Andrew F. , Troester Melissa A.
Published: April 2023

Supplemental Figure 2. The association between smoking and ESR1-defined breast cancer subtypes.
Supplementary Figure S2 from Dense and Nondense Mammographic Area and Risk of Breast Cancer by Age and Tumor Characteristics
Authors: Bertrand Kimberly A. , Scott Christopher G. , Tamimi Rulla M. , Jensen Matthew R. , Pankratz V. Shane , Norman Aaron D. , Visscher Daniel W. , Couch Fergus J. , Shepherd John , Chen Yunn-Yi , Fan Bo , Wu Fang-Fang , Ma Lin , Beck Andrew H. , Cummings Steven R. , Kerlikowske Karla , Vachon Celine M.
Published: April 2023

Standardization of dense (DA) and non dense area (NDA) phenotypes. The age and study effects are removed in standardized measures.