bluuebunny/crossref_metadata_2025 huggingface dataset:
Supplementary Tables from FTO-Dependent N6-Methyladenosine Modifications Inhibit Ovarian Cancer Stem Cell Self-Renewal by Blocking cAMP Signaling
Authors: Huang Hao , Wang Yinu , Kandpal Manoj , Zhao Guangyuan , Cardenas Horacio , Ji Yanrong , Chaparala Anusha , Tanner Edward J. , Chen Jianjun , Davuluri Ramana V. , Matei Daniela
Published: March 2023

Supplemental tables include gene lists related to Figure 5, additional experimental data related to Figure S3I, and primers sequence. Table S1. Numbers of spheroids were counted for each cell dilution; Table S2. List of 20 genes that exhibit a significant change between control and FTO-overexpressing OVCAR5 cells in m6A peak levels, and abundance of the corresponding mRNA transcripta; Table S3. List of primers oligonucleotides; Table S4. Summary of the m6A-seq and RNA-seq; Table S5. List of top 50 hypo-methylation & down-regulated genes; Table S6: List of top 50 hypo-methylation &up-regulated genes.
Supplementary Table S2 from Slow-Cycling Cancer Stem Cells Regulate Progression and Chemoresistance in Colon Cancer
Authors: Shiokawa Daisuke , Sakai Hiroaki , Ohata Hirokazu , Miyazaki Toshiaki , Kanda Yusuke , Sekine Shigeki , Narushima Daichi , Hosokawa Masahito , Kato Mamoru , Suzuki Yutaka , Takeyama Haruko , Kambara Hideki , Nakagama Hitoshi , Okamoto Koji
Published: March 2023

Supplementary Table S2
Supplementary Table S1 from Slow-Cycling Cancer Stem Cells Regulate Progression and Chemoresistance in Colon Cancer
Authors: Shiokawa Daisuke , Sakai Hiroaki , Ohata Hirokazu , Miyazaki Toshiaki , Kanda Yusuke , Sekine Shigeki , Narushima Daichi , Hosokawa Masahito , Kato Mamoru , Suzuki Yutaka , Takeyama Haruko , Kambara Hideki , Nakagama Hitoshi , Okamoto Koji
Published: March 2023

Supplementary Table S1
Table. S4 from Hes1 Is Essential in Proliferating Ductal Cell–Mediated Development of Intrahepatic Cholangiocarcinoma
Authors: Matsumori Tomoaki , Kodama Yuzo , Takai Atsushi , Shiokawa Masahiro , Nishikawa Yoshihiro , Matsumoto Tomonori , Takeda Haruhiko , Marui Saiko , Okada Hirokazu , Hirano Tomonori , Kuwada Takeshi , Sogabe Yuko , Kakiuchi Nobuyuki , Tomono Teruko , Mima Atsushi , Morita Toshihiro , Ueda Tatsuki , Tsuda Motoyuki , Yamauchi Yuki , Kuriyama Katsutoshi , Sakuma Yojiro , Ota Yuji , Maruno Takahisa , Uza Norimitsu , Marusawa Hiroyuki , Kageyama Ryoichiro , Chiba Tsutomu , Seno Hiroshi
Published: March 2023

The characteristics of analyzed ICC patients.
Supplementary Table 1 from Cellular and Genetic Determinants of the Sensitivity of Cancer to α-Particle Irradiation
Authors: Yard Brian D. , Gopal Priyanka , Bannik Kristina , Siemeister Gerhard , Hagemann Urs B. , Abazeed Mohamed E.
Published: March 2023

CCLE cell lines profiled and radiation sensitivity data.
Supplementary Materials and Methods from Predictive Signatures Inform the Effective Repurposing of Decitabine to Treat KRAS–Dependent Pancreatic Ductal Adenocarcinoma
Authors: Mottini Carla , Tomihara Hideo , Carrella Diego , Lamolinara Alessia , Iezzi Manuela , Huang Justin K. , Amoreo Carla A. , Buglioni Simonetta , Manni Isabella , Robinson Frederick S. , Minelli Rosalba , Kang Ya'an , Fleming Jason B. , Kim Michael P. , Bristow Christopher A. , Trisciuoglio Daniela , Iuliano Antonella , Del Bufalo Donatella , Di Bernardo Diego , Melisi Davide , Draetta Giulio F. , Ciliberto Gennaro , Carugo Alessandro , Cardone Luca
Published: March 2023

Supplementary Materials and Methods
Supplemental Figure 2 from Palmitoylated Proteins on AML-Derived Extracellular Vesicles Promote Myeloid-Derived Suppressor Cell Differentiation via TLR2/Akt/mTOR Signaling
Authors: Tohumeken Sehmus , Baur Rebecca , Böttcher Martin , Stoll Andrej , Loschinski Romy , Panagiotidis Konstantinos , Braun Martina , Saul Domenica , Völkl Simon , Baur Andreas S. , Bruns Heiko , Mackensen Andreas , Jitschin Regina , Mougiakakos Dimitrios
Published: March 2023

(A) CD33 expression on AML-EVs, (B) Cytokine-content of AML-EVs, (C) Localization analysis of AML-EVs in monocytes, (D) Control experiment regarding EV-independent uptake of PKH26.
Supplementary Figures from Determination of Tumor Margins with Surgical Specimen Mapping Using Near-Infrared Fluorescence
Authors: Gao Rebecca W. , Teraphongphom Nutte T. , van den Berg Nynke S. , Martin Brock A. , Oberhelman Nicholas J. , Divi Vasu , Kaplan Michael J. , Hong Steven S. , Lu Guolan , Ertsey Robert , Tummers Willemieke S.F.J. , Gomez Adam J. , Holsinger F. Christopher , Kong Christina S. , Colevas Alexander D. , Warram Jason M. , Rosenthal Eben L.
Published: March 2023

1. Supplementary Figure 1: Patient and tumor characteristics. 2. Supplementary Figure 2: Flow diagram of tumor-mapping analysis. The primary tumor specimen (A) is imaged using a closed-field fluorescence imaging device (B) and sectioned into breadloafs (C). H&E slides with areas of tumor tissue marked by a board-certified pathologist are analyzed, and tumor tissue distance to the deep margin surface is measured. Tumor depth in areas with fluorescence are compared to tumor depth in areas without fluorescence. 3. Supplementary Table 1: Sensitivity, specificity, positive predictive value (PPV) and negative predictive value (NPV) of fluorescence signal for areas of the primary tumor specimen with tumor tissue {less than or equal to} 1 mm from the deep margin surface given by cohort. 4. Supplementary Table 2: Sensitivity, specificity, PPV, and NPV of fluorescence signal for areas of the primary tumor specimen with tumor tissue {less than or equal to} 2 mm from the deep margin surface given by cohort.
Supplementary Table 1 from Loss of ARID1A Promotes Epithelial–Mesenchymal Transition and Sensitizes Pancreatic Tumors to Proteotoxic Stress
Authors: Tomihara Hideo , Carbone Federica , Perelli Luigi , Huang Justin K. , Soeung Melinda , Rose Johnathon L. , Robinson Frederick S. , Lissanu Deribe Yonathan , Feng Ningping , Takeda Mitsunobu , Inoue Akira , Poggetto Edoardo Del , Deem Angela K. , Maitra Anirban , Msaouel Pavlos , Tannir Nizar M. , Draetta Giulio F. , Viale Andrea , Heffernan Timothy P. , Bristow Christopher A. , Carugo Alessandro , Genovese Giannicola
Published: March 2023

Comparison of IC50 values based on the gene mutation status
Dataset S3 from Inhibition of Histone H3K27 Demethylases Inactivates Brachyury (TBXT) and Promotes Chordoma Cell Death
Authors: Cottone Lucia , Cribbs Adam P. , Khandelwal Garima , Wells Graham , Ligammari Lorena , Philpott Martin , Tumber Anthony , Lombard Patrick , Hookway Edward S. , Szommer Tamas , Johansson Catrine , Brennan Paul E. , Pillay Nischalan , Jenner Richard G. , Oppermann Udo , Flanagan Adrienne M.
Published: March 2023

Cottone_Dataset_S3_Chordoma_UCH1_K27Me3_GEA
Supplementary Figure from A Hyperactive RelA/p65-Hexokinase 2 Signaling Axis Drives Primary Central Nervous System Lymphoma
Authors: Tateishi Kensuke , Miyake Yohei , Kawazu Masahito , Sasaki Nobuyoshi , Nakamura Taishi , Sasame Jo , Yoshii Yukie , Ueno Toshihide , Miyake Akio , Watanabe Jun , Matsushita Yuko , Shiba Norio , Udaka Naoko , Ohki Kentaro , Fink Alexandria L. , Tummala Shilpa S. , Natsumeda Manabu , Ikegaya Naoki , Nishi Mayuko , Ohtake Makoto , Miyazaki Ryohei , Suenaga Jun , Murata Hidetoshi , Aoki Ichio , Miller Julie J. , Fujii Yukihiko , Ryo Akihide , Yamanaka Shoji , Mano Hiroyuki , Cahill Daniel P. , Wakimoto Hiroaki , Chi Andrew S. , Batchelor Tracy T. , Nagane Motoo , Ichimura Koichi , Yamamoto Tetsuya
Published: March 2023

Supplementary Figure S1-S7
Figure S4 from STAT3-Mediated Astrocyte Reactivity Associated with Brain Metastasis Contributes to Neurovascular Dysfunction
Authors: Sarmiento Soto Manuel , Larkin James R. , Martin Chris , Khrapitchev Alexandre A. , Maczka Melissa , Economopoulos Vasiliki , Scott Helen , Escartin Carole , Bonvento Gilles , Serres Sébastien , Sibson Nicola R.
Published: March 2023

Additional info regarding colocalisation studies
Figure S3 from GSK3β-Mediated Expression of CUG-Translated WT1 Is Critical for Tumor Progression
Authors: Yoshitomi Hisae , Lee Kun Y. , Yao Ke , Shin Seung Ho , Zhang Tianshun , Wang Qiushi , Paul Souren , Roh Eunmiri , Ryu Joohyun , Chen Hanyong , Aziz Faisal , Chakraborty Abhijit , Bode Ann M. , Dong Zigang
Published: March 2023

A cycloheximide (CHX) chase assay was used to detect turnover of cugWT1 proteins. HeLa cells were transfected with V5-cugWT1 wt or mutants (S64A, S68E) with Flag-FBXW4 or Flag-FBXW5 and then treated with CHX (20 μg/mL) to prevent further protein synthesis. Whole cell lysates were harvested and prepared at 0, 3, and 6 h post CHX treatment and visualized by Western blotting.
Figure S3 from STAT3-Mediated Astrocyte Reactivity Associated with Brain Metastasis Contributes to Neurovascular Dysfunction
Authors: Sarmiento Soto Manuel , Larkin James R. , Martin Chris , Khrapitchev Alexandre A. , Maczka Melissa , Economopoulos Vasiliki , Scott Helen , Escartin Carole , Bonvento Gilles , Serres Sébastien , Sibson Nicola R.
Published: March 2023

Additional info regarding the use of WP1066
Figure S1 from STAT3-Mediated Astrocyte Reactivity Associated with Brain Metastasis Contributes to Neurovascular Dysfunction
Authors: Sarmiento Soto Manuel , Larkin James R. , Martin Chris , Khrapitchev Alexandre A. , Maczka Melissa , Economopoulos Vasiliki , Scott Helen , Escartin Carole , Bonvento Gilles , Serres Sébastien , Sibson Nicola R.
Published: March 2023

Additional info regarding the ENU model
Supplementary Material and Methods from Therapeutic Targeting of Metadherin Suppresses Colorectal and Lung Cancer Progression and Metastasis
Authors: Shen Minhong , Xie Shanshan , Rowicki Michelle , Michel Sven , Wei Yong , Hang Xiang , Wan Liling , Lu Xin , Yuan Min , Jin John F. , Jaschinski Frank , Zhou Tianhua , Klar Richard , Kang Yibin
Published: March 2023

Supplementary Material and Methods
Supplemental Table 1 from Steroid Hormone Receptor and Infiltrating Immune Cell Status Reveals Therapeutic Vulnerabilities of ESR1-Mutant Breast Cancer
Authors: Williams Michelle M. , Spoelstra Nicole S. , Arnesen Spencer , O'Neill Kathleen I. , Christenson Jessica L. , Reese Jordan , Torkko Kathleen C. , Goodspeed Andrew , Rosas Emmanuel , Hanamura Toru , Sams Sharon B. , Li Zheqi , Oesterreich Steffi , Riggins Rebecca B. , Jacobsen Britta M. , Elias Anthony , Gertz Jason , Richer Jennifer K.
Published: March 2023

Supplemental Table 1. List of AR regulated genes altered in both D538G and Y537S mutants.
Supplementary Table S4 from EZH2-Mediated Downregulation of the Tumor Suppressor DAB2IP Maintains Ovarian Cancer Stem Cells
Authors: Zong Xingyue , Wang Weini , Ozes Ali , Fang Fang , Sandusky George E. , Nephew Kenneth P.
Published: March 2023

Supplementary Table S4
Supplementary Table S3 from EZH2-Mediated Downregulation of the Tumor Suppressor DAB2IP Maintains Ovarian Cancer Stem Cells
Authors: Zong Xingyue , Wang Weini , Ozes Ali , Fang Fang , Sandusky George E. , Nephew Kenneth P.
Published: March 2023

Supplementary Table S3
Supplementary Table S2 from EZH2-Mediated Downregulation of the Tumor Suppressor DAB2IP Maintains Ovarian Cancer Stem Cells
Authors: Zong Xingyue , Wang Weini , Ozes Ali , Fang Fang , Sandusky George E. , Nephew Kenneth P.
Published: March 2023

Supplementary Table S2
Supplementary Materials and Methods from Deciphering the Role of Intestinal Crypt Cell Populations in Resistance to Chemotherapy
Authors: Frau Carla , Jamard Catherine , Delpouve Gaspard , Guardia Gabriela D.A. , Machon Christelle , Pilati Camilla , Nevé Clémentine Le , Laurent-Puig Pierre , Guitton Jérôme , Galante Pedro A.F. , Penalva Luiz O. , Freund Jean-Noel , de la Fouchardiere Christelle , Plateroti Michelina
Published: March 2023

Supplementary Materials and Methods
Supplementary Table S1 from EZH2-Mediated Downregulation of the Tumor Suppressor DAB2IP Maintains Ovarian Cancer Stem Cells
Authors: Zong Xingyue , Wang Weini , Ozes Ali , Fang Fang , Sandusky George E. , Nephew Kenneth P.
Published: March 2023

Supplementary Table S1
Supplementary Materials and Methods from EZH2-Mediated Downregulation of the Tumor Suppressor DAB2IP Maintains Ovarian Cancer Stem Cells
Authors: Zong Xingyue , Wang Weini , Ozes Ali , Fang Fang , Sandusky George E. , Nephew Kenneth P.
Published: March 2023

Supplementary Materials and Methods
Supplementary Figures from EZH2-Mediated Downregulation of the Tumor Suppressor DAB2IP Maintains Ovarian Cancer Stem Cells
Authors: Zong Xingyue , Wang Weini , Ozes Ali , Fang Fang , Sandusky George E. , Nephew Kenneth P.
Published: March 2023

Supplementary Figures S1-S10
Supplementary Materials and Methods from Endothelin-1–Mediated Drug Resistance in EGFR-Mutant Non-Small Cell Lung Carcinoma
Authors: Pulido Inés , Ollosi Stephen , Aparisi Salvador , Becker Jeffrey H. , Aliena-Valero Alicia , Benet Marta , Rodríguez María L. , López Adrián , Tamayo-Torres Eva , Chuliá-Peris Lourdes , García-Cañaveras Juan Carlos , Soucheray Margaret , Dalheim Annika V. , Salom Juan B. , Qiu Wei , Kaja Simon , Fernández-Coronado Javier Alcácer , Alandes Sandra , Alcácer Javier , Al-Shahrour Fátima , Borgia Jeffrey A. , Juan Oscar , Nishimura Michael I. , Lahoz Agustín , Carretero Julián , Shimamura Takeshi
Published: March 2023

Supplementary Materials and Methods
Supplementary Figure S1-S5 from Endothelin-1–Mediated Drug Resistance in EGFR-Mutant Non-Small Cell Lung Carcinoma
Authors: Pulido Inés , Ollosi Stephen , Aparisi Salvador , Becker Jeffrey H. , Aliena-Valero Alicia , Benet Marta , Rodríguez María L. , López Adrián , Tamayo-Torres Eva , Chuliá-Peris Lourdes , García-Cañaveras Juan Carlos , Soucheray Margaret , Dalheim Annika V. , Salom Juan B. , Qiu Wei , Kaja Simon , Fernández-Coronado Javier Alcácer , Alandes Sandra , Alcácer Javier , Al-Shahrour Fátima , Borgia Jeffrey A. , Juan Oscar , Nishimura Michael I. , Lahoz Agustín , Carretero Julián , Shimamura Takeshi
Published: March 2023

Supplementary Figure S1-S5
Supplementary Video 3 from ORAI2 Promotes Gastric Cancer Tumorigenicity and Metastasis through PI3K/Akt Signaling and MAPK-Dependent Focal Adhesion Disassembly
Authors: Wu Shayi , Chen Miao , Huang Jiao , Zhang Feifei , Lv Zhaojie , Jia Yongxu , Cui Yu-Zhu , Sun Liang-Zhan , Wang Ying , Tang Ying , Verhoeft Krista R. , Li Yan , Qin Yanru , Lin Xiang , Guan Xin-Yuan , Lam Ka-On
Published: March 2023

SUN216-Sh3
Supplementary Video 2 from ORAI2 Promotes Gastric Cancer Tumorigenicity and Metastasis through PI3K/Akt Signaling and MAPK-Dependent Focal Adhesion Disassembly
Authors: Wu Shayi , Chen Miao , Huang Jiao , Zhang Feifei , Lv Zhaojie , Jia Yongxu , Cui Yu-Zhu , Sun Liang-Zhan , Wang Ying , Tang Ying , Verhoeft Krista R. , Li Yan , Qin Yanru , Lin Xiang , Guan Xin-Yuan , Lam Ka-On
Published: March 2023

SUN216-Sh2
Supplementary Table 1 from Widespread Repression of Gene Expression in Cancer by a Wnt/β-Catenin/MAPK Pathway
Authors: Harmston Nathan , Lim Jun Yi Stanley , Arqués Oriol , Palmer Héctor G. , Petretto Enrico , Virshup David M. , Madan Babita
Published: March 2023

Supplementary Table 1
Supplementary Figures from Widespread Repression of Gene Expression in Cancer by a Wnt/β-Catenin/MAPK Pathway
Authors: Harmston Nathan , Lim Jun Yi Stanley , Arqués Oriol , Palmer Héctor G. , Petretto Enrico , Virshup David M. , Madan Babita
Published: March 2023

Supplementary Figures 1 and 2 and legends for Table S1, S2 and S3
Supplementary Tab 6 from Cyclophosphamide and Vinorelbine Activate Stem-Like CD8+ T Cells and Improve Anti-PD-1 Efficacy in Triple-Negative Breast Cancer
Authors: Falvo Paolo , Orecchioni Stefania , Hillje Roman , Raveane Alessandro , Mancuso Patrizia , Camisaschi Chiara , Luzi Lucilla , Pelicci PierGiuseppe , Bertolini Francesco
Published: March 2023

Suppl Tab 6
Supplementary Tab 5 from Cyclophosphamide and Vinorelbine Activate Stem-Like CD8+ T Cells and Improve Anti-PD-1 Efficacy in Triple-Negative Breast Cancer
Authors: Falvo Paolo , Orecchioni Stefania , Hillje Roman , Raveane Alessandro , Mancuso Patrizia , Camisaschi Chiara , Luzi Lucilla , Pelicci PierGiuseppe , Bertolini Francesco
Published: March 2023

Suppl Tab 5
Supplementary Data from A Transcriptional Regulatory Loop of Master Regulator Transcription Factors, PPARG, and Fatty Acid Synthesis Promotes Esophageal Adenocarcinoma
Authors: Ma Sai , Zhou Bo , Yang Qian , Pan Yunzhi , Yang Wei , Freedland Stephen J. , Ding Ling-Wen , Freeman Michael R. , Breunig Joshua J. , Bhowmick Neil A. , Pan Jian , Koeffler H. Phillip , Lin De-Chen
Published: March 2023

Supplementary table S1-S3
Supplementary Tab 1 from Cyclophosphamide and Vinorelbine Activate Stem-Like CD8+ T Cells and Improve Anti-PD-1 Efficacy in Triple-Negative Breast Cancer
Authors: Falvo Paolo , Orecchioni Stefania , Hillje Roman , Raveane Alessandro , Mancuso Patrizia , Camisaschi Chiara , Luzi Lucilla , Pelicci PierGiuseppe , Bertolini Francesco
Published: March 2023

Suppl Tab 1
Supplementary Figures from Cyclophosphamide and Vinorelbine Activate Stem-Like CD8+ T Cells and Improve Anti-PD-1 Efficacy in Triple-Negative Breast Cancer
Authors: Falvo Paolo , Orecchioni Stefania , Hillje Roman , Raveane Alessandro , Mancuso Patrizia , Camisaschi Chiara , Luzi Lucilla , Pelicci PierGiuseppe , Bertolini Francesco
Published: March 2023

Supplementary Figures
Supplementary Figures S1 to S6 from RIG-I–Like Receptor LGP2 Is Required for Tumor Control by Radiotherapy
Authors: Zheng Wenxin , Ranoa Diana Rose E. , Huang Xiaona , Hou Yuzhu , Yang Kaiting , Poli Elizabeth C. , Beckett Michael A. , Fu Yang-Xin , Weichselbaum Ralph R.
Published: March 2023

Figure S1. describes the apoptotic status of tumor infiltrating and antigen specific CD8+ T cells; Figure S2. describes the apoptotic status and cell surface phenotype of BMDCs; Fig S3. shows an association analysis of LGP2 and overall survival of TNBC and Luminal A patients who received RT; Fig S4. shows correlation analysis between LGP2 expression and clinical outcome of melanoma and sarcoma patients; Figure S5. shows Correlation between gene expression level of LGP2 (DHX58) and signature genes of DCs and CD8+ T cells in human melanoma; Fig S6. shows an association between LGP2 expression and prognosis in pancreatic cancer and colorectal cancers.
Supplementary table 1 from Hypoxia-Driven Oncometabolite L-2HG Maintains Stemness-Differentiation Balance and Facilitates Immune Evasion in Pancreatic Cancer
Authors: Gupta Vineet K. , Sharma Nikita S. , Durden Brittany , Garrido Vanessa T. , Kesh Kousik , Edwards Dujon , Wang Dezhen , Myer Ciara , Mateo-Victoriano Beatriz , Kollala Sai Sundeep , Ban Yuguang , Gao Zhen , Bhattacharya Sanjoy K. , Saluja Ashok , Singh Pankaj K. , Banerjee Sulagna
Published: March 2023

ITRAQ table
Supplementary Data from Hypoxia-Driven Oncometabolite L-2HG Maintains Stemness-Differentiation Balance and Facilitates Immune Evasion in Pancreatic Cancer
Authors: Gupta Vineet K. , Sharma Nikita S. , Durden Brittany , Garrido Vanessa T. , Kesh Kousik , Edwards Dujon , Wang Dezhen , Myer Ciara , Mateo-Victoriano Beatriz , Kollala Sai Sundeep , Ban Yuguang , Gao Zhen , Bhattacharya Sanjoy K. , Saluja Ashok , Singh Pankaj K. , Banerjee Sulagna
Published: March 2023

RNA seq data file after treatment of S2VP10 cells with L-2HG
Supplementary Methods from Macrophage-Derived Cholesterol Contributes to Therapeutic Resistance in Prostate Cancer
Authors: El-Kenawi Asmaa , Dominguez-Viqueira William , Liu Min , Awasthi Shivanshu , Abraham-Miranda Julieta , Keske Aysenur , Steiner KayLee K. , Noel Leenil , Serna Amparo N. , Dhillon Jasreman , Gillies Robert J. , Yu Xiaoqing , Koomen John M. , Yamoah Kosj , Gatenby Robert A. , Ruffell Brian
Published: March 2023

Additional details on LC-MS/MS sample preparation and RNA sequencing
Figure S6 from Macrophage-Derived Cholesterol Contributes to Therapeutic Resistance in Prostate Cancer
Authors: El-Kenawi Asmaa , Dominguez-Viqueira William , Liu Min , Awasthi Shivanshu , Abraham-Miranda Julieta , Keske Aysenur , Steiner KayLee K. , Noel Leenil , Serna Amparo N. , Dhillon Jasreman , Gillies Robert J. , Yu Xiaoqing , Koomen John M. , Yamoah Kosj , Gatenby Robert A. , Ruffell Brian
Published: March 2023

Impact of lupron and enzalutamide on tumor growth
Table S2 from Targeting Adenosine with Adenosine Deaminase 2 to Inhibit Growth of Solid Tumors
Authors: Wang Lin , Londono Luz M. , Cowell Jessica , Saatci Ozge , Aras Mertkaya , Ersan Pelin G. , Serra Sara , Pei Hong , Clift Renee , Zhao Qiping , Phan Kim B. , Huang Lei , LaBarre Michael J. , Li Xiaoming , Shepard H. Michael , Deaglio Silvia , Linden Joel , Thanos Christopher D. , Sahin Ozgur , Cekic Caglar
Published: March 2023

Supplementary Table S2
Figure S4 from Macrophage-Derived Cholesterol Contributes to Therapeutic Resistance in Prostate Cancer
Authors: El-Kenawi Asmaa , Dominguez-Viqueira William , Liu Min , Awasthi Shivanshu , Abraham-Miranda Julieta , Keske Aysenur , Steiner KayLee K. , Noel Leenil , Serna Amparo N. , Dhillon Jasreman , Gillies Robert J. , Yu Xiaoqing , Koomen John M. , Yamoah Kosj , Gatenby Robert A. , Ruffell Brian
Published: March 2023

Abundance of lipids in macrophages and importance of mevalonate pathway in prostate cancer cells
Figure S3 from Macrophage-Derived Cholesterol Contributes to Therapeutic Resistance in Prostate Cancer
Authors: El-Kenawi Asmaa , Dominguez-Viqueira William , Liu Min , Awasthi Shivanshu , Abraham-Miranda Julieta , Keske Aysenur , Steiner KayLee K. , Noel Leenil , Serna Amparo N. , Dhillon Jasreman , Gillies Robert J. , Yu Xiaoqing , Koomen John M. , Yamoah Kosj , Gatenby Robert A. , Ruffell Brian
Published: March 2023

Relationship between macrophages, AR nuclear localization, and prostate cancer cell proliferation
Figure S1-11 from Targeting Adenosine with Adenosine Deaminase 2 to Inhibit Growth of Solid Tumors
Authors: Wang Lin , Londono Luz M. , Cowell Jessica , Saatci Ozge , Aras Mertkaya , Ersan Pelin G. , Serra Sara , Pei Hong , Clift Renee , Zhao Qiping , Phan Kim B. , Huang Lei , LaBarre Michael J. , Li Xiaoming , Shepard H. Michael , Deaglio Silvia , Linden Joel , Thanos Christopher D. , Sahin Ozgur , Cekic Caglar
Published: March 2023

Supplementary Figure S1-11
Figure S2 from Macrophage-Derived Cholesterol Contributes to Therapeutic Resistance in Prostate Cancer
Authors: El-Kenawi Asmaa , Dominguez-Viqueira William , Liu Min , Awasthi Shivanshu , Abraham-Miranda Julieta , Keske Aysenur , Steiner KayLee K. , Noel Leenil , Serna Amparo N. , Dhillon Jasreman , Gillies Robert J. , Yu Xiaoqing , Koomen John M. , Yamoah Kosj , Gatenby Robert A. , Ruffell Brian
Published: March 2023

Impact of neutralizing CSF1on the immune repertoire and effect of lupron on the tumor transcriptome
Figure S1 from Macrophage-Derived Cholesterol Contributes to Therapeutic Resistance in Prostate Cancer
Authors: El-Kenawi Asmaa , Dominguez-Viqueira William , Liu Min , Awasthi Shivanshu , Abraham-Miranda Julieta , Keske Aysenur , Steiner KayLee K. , Noel Leenil , Serna Amparo N. , Dhillon Jasreman , Gillies Robert J. , Yu Xiaoqing , Koomen John M. , Yamoah Kosj , Gatenby Robert A. , Ruffell Brian
Published: March 2023

Representative images and detailed quantification of immune markers in the prostate mouse model
fullscanofwesternblots.pptx from CKAP2L Promotes Non–Small Cell Lung Cancer Progression through Regulation of Transcription Elongation
Authors: Monteverde Tiziana , Sahoo Sudhakar , La Montagna Manuela , Magee Peter , Shi Lei , Lee Dave , Sellers Robert , Baker Alexander R. , Leong Hui Sun , Fassan Matteo , Garofalo Michela
Published: March 2023

unprocessed original images of western blots
Supplementary Table 2 from A lncRNA TCL6-miR-155 Interaction Regulates the Src-Akt-EMT Network to Mediate Kidney Cancer Progression and Metastasis
Authors: Kulkarni Priyanka , Dasgupta Pritha , Hashimoto Yutaka , Shiina Marisa , Shahryari Varahram , Tabatabai Z. Laura , Yamamura Soichiro , Tanaka Yuichiro , Saini Sharanjot , Dahiya Rajvir , Majid Shahana
Published: March 2023

Antibody used with their catalog numbers
Supplementary Table 1 from A lncRNA TCL6-miR-155 Interaction Regulates the Src-Akt-EMT Network to Mediate Kidney Cancer Progression and Metastasis
Authors: Kulkarni Priyanka , Dasgupta Pritha , Hashimoto Yutaka , Shiina Marisa , Shahryari Varahram , Tabatabai Z. Laura , Yamamura Soichiro , Tanaka Yuichiro , Saini Sharanjot , Dahiya Rajvir , Majid Shahana
Published: March 2023

Primer Sequences
Supplementary Table 2 from CKAP2L Promotes Non–Small Cell Lung Cancer Progression through Regulation of Transcription Elongation
Authors: Monteverde Tiziana , Sahoo Sudhakar , La Montagna Manuela , Magee Peter , Shi Lei , Lee Dave , Sellers Robert , Baker Alexander R. , Leong Hui Sun , Fassan Matteo , Garofalo Michela
Published: March 2023

CKAP2L binding partners were identified by LC-MS
Supplementary Figures from A lncRNA TCL6-miR-155 Interaction Regulates the Src-Akt-EMT Network to Mediate Kidney Cancer Progression and Metastasis
Authors: Kulkarni Priyanka , Dasgupta Pritha , Hashimoto Yutaka , Shiina Marisa , Shahryari Varahram , Tabatabai Z. Laura , Yamamura Soichiro , Tanaka Yuichiro , Saini Sharanjot , Dahiya Rajvir , Majid Shahana
Published: March 2023

Supplementary figures S1-S6
Supplementary Figure 6 from CKAP2L Promotes Non–Small Cell Lung Cancer Progression through Regulation of Transcription Elongation
Authors: Monteverde Tiziana , Sahoo Sudhakar , La Montagna Manuela , Magee Peter , Shi Lei , Lee Dave , Sellers Robert , Baker Alexander R. , Leong Hui Sun , Fassan Matteo , Garofalo Michela
Published: March 2023

Differentially expressed genes in CKAP2L-depleted cells
Supplementary Table 1 from Survivin Expression Is Differentially Regulated by a Selective Cross-talk between RBM38 and miRNAs let-7b or miR-203a
Authors: Lucchesi Christopher A. , Zhang Jin , Ma Buyong , Nussinov Ruth , Chen Xinbin
Published: March 2023

List of all the primers used in the study
Supplementary Materials and Methods from Survivin Expression Is Differentially Regulated by a Selective Cross-talk between RBM38 and miRNAs let-7b or miR-203a
Authors: Lucchesi Christopher A. , Zhang Jin , Ma Buyong , Nussinov Ruth , Chen Xinbin
Published: March 2023

Additional methods.
Supplementary Figure 1 from CKAP2L Promotes Non–Small Cell Lung Cancer Progression through Regulation of Transcription Elongation
Authors: Monteverde Tiziana , Sahoo Sudhakar , La Montagna Manuela , Magee Peter , Shi Lei , Lee Dave , Sellers Robert , Baker Alexander R. , Leong Hui Sun , Fassan Matteo , Garofalo Michela
Published: March 2023

Correlation analysis between LuAd gene expression and CIN
Supplementary Data from CKAP2L Promotes Non–Small Cell Lung Cancer Progression through Regulation of Transcription Elongation
Authors: Monteverde Tiziana , Sahoo Sudhakar , La Montagna Manuela , Magee Peter , Shi Lei , Lee Dave , Sellers Robert , Baker Alexander R. , Leong Hui Sun , Fassan Matteo , Garofalo Michela
Published: March 2023

Supplementary methods
Supplementary Data from CIP2A Interacts with TopBP1 and Drives Basal-Like Breast Cancer Tumorigenesis
Authors: Laine Anni , Nagelli Srikar G. , Farrington Caroline , Butt Umar , Cvrljevic Anna N. , Vainonen Julia P. , Feringa Femke M. , Grönroos Tove J. , Gautam Prson , Khan Sofia , Sihto Harri , Qiao Xi , Pavic Karolina , Connolly Denise C. , Kronqvist Pauliina , Elo Laura L. , Maurer Jochen , Wennerberg Krister , Medema Rene H. , Joensuu Heikki , Peuhu Emilia , de Visser Karin , Narla Goutham , Westermarck Jukka
Published: March 2023

Supplementary Data from CIP2A Interacts with TopBP1 and Drives Basal-Like Breast Cancer Tumorigenesis
Supplementary Data from The Hydroxyquinoline Analogue YUM70 Inhibits GRP78 to Induce ER Stress–Mediated Apoptosis in Pancreatic Cancer
Authors: Samanta Soma , Yang Suhui , Debnath Bikash , Xue Ding , Kuang Yuting , Ramkumar Kavya , Lee Amy S. , Ljungman Mats , Neamati Nouri
Published: March 2023

Supplementary materials include detailed chemistry, supplementary materials and methods, references, and supplementary figures.
Table S3 from Altering the Microbiome Inhibits Tumorigenesis in a Mouse Model of Oviductal High-Grade Serous Carcinoma
Authors: Chen Lixing , Zhai Yali , Wang Yisheng , Fearon Eric R. , Núñez Gabriel , Inohara Naohiro , Cho Kathleen R.
Published: March 2023

Fecal and vaginal microbiota - correlations with tumor score
Figure S5 from Dual Covalent Inhibition of PKM and IMPDH Targets Metabolism in Cutaneous Metastatic Melanoma
Authors: Zerhouni Marwa , Martin Anthony R. , Furstoss Nathan , Gutierrez Vincent S. , Jaune Emilie , Tekaya Nedra , Beranger Guillaume E. , Abbe Patricia , Regazzetti Claire , Amdouni Hella , Driowya Mohsine , Dubreuil Patrice , Luciano Frédéric , Jacquel Arnaud , Tulic Meri K. , Cluzeau Thomas , O'Hara Brendan P. , Ben-Sahra Issam , Passeron Thierry , Benhida Rachid , Robert Guillaume , Auberger Patrick , Rocchi Stéphane
Published: March 2023

Supplemental Figure 5
Figure S4 from Dual Covalent Inhibition of PKM and IMPDH Targets Metabolism in Cutaneous Metastatic Melanoma
Authors: Zerhouni Marwa , Martin Anthony R. , Furstoss Nathan , Gutierrez Vincent S. , Jaune Emilie , Tekaya Nedra , Beranger Guillaume E. , Abbe Patricia , Regazzetti Claire , Amdouni Hella , Driowya Mohsine , Dubreuil Patrice , Luciano Frédéric , Jacquel Arnaud , Tulic Meri K. , Cluzeau Thomas , O'Hara Brendan P. , Ben-Sahra Issam , Passeron Thierry , Benhida Rachid , Robert Guillaume , Auberger Patrick , Rocchi Stéphane
Published: March 2023

Supplemental Figure 4
Figure S2 from Dual Covalent Inhibition of PKM and IMPDH Targets Metabolism in Cutaneous Metastatic Melanoma
Authors: Zerhouni Marwa , Martin Anthony R. , Furstoss Nathan , Gutierrez Vincent S. , Jaune Emilie , Tekaya Nedra , Beranger Guillaume E. , Abbe Patricia , Regazzetti Claire , Amdouni Hella , Driowya Mohsine , Dubreuil Patrice , Luciano Frédéric , Jacquel Arnaud , Tulic Meri K. , Cluzeau Thomas , O'Hara Brendan P. , Ben-Sahra Issam , Passeron Thierry , Benhida Rachid , Robert Guillaume , Auberger Patrick , Rocchi Stéphane
Published: March 2023

Supplementary figure 2
Figure S1 from Altering the Microbiome Inhibits Tumorigenesis in a Mouse Model of Oviductal High-Grade Serous Carcinoma
Authors: Chen Lixing , Zhai Yali , Wang Yisheng , Fearon Eric R. , Núñez Gabriel , Inohara Naohiro , Cho Kathleen R.
Published: March 2023

Photomicrographs of H&E and immunostained sections of tumors arising in BPRN mice
Figure S1 from Dual Covalent Inhibition of PKM and IMPDH Targets Metabolism in Cutaneous Metastatic Melanoma
Authors: Zerhouni Marwa , Martin Anthony R. , Furstoss Nathan , Gutierrez Vincent S. , Jaune Emilie , Tekaya Nedra , Beranger Guillaume E. , Abbe Patricia , Regazzetti Claire , Amdouni Hella , Driowya Mohsine , Dubreuil Patrice , Luciano Frédéric , Jacquel Arnaud , Tulic Meri K. , Cluzeau Thomas , O'Hara Brendan P. , Ben-Sahra Issam , Passeron Thierry , Benhida Rachid , Robert Guillaume , Auberger Patrick , Rocchi Stéphane
Published: March 2023

Supplemental Figure 1
Supplementary Data from Pan-Cancer Analysis of Ligand–Receptor Cross-talk in the Tumor Microenvironment
Authors: Ghoshdastider Umesh , Rohatgi Neha , Mojtabavi Naeini Marjan , Baruah Probhonjon , Revkov Egor , Guo Yu Amanda , Rizzetto Simone , Wong Angeline M.L. , Solai Sundar , Nguyen Tin T. , Yeong Joe Poh Sheng , Iqbal Jabed , Tan Puay Hoon , Chowbay Balram , Dasgupta Ramanuj , Skanderup Anders J.
Published: March 2023

Supplementary results and methods
Supplementary Data from Pan-Cancer Analysis of Ligand–Receptor Cross-talk in the Tumor Microenvironment
Authors: Ghoshdastider Umesh , Rohatgi Neha , Mojtabavi Naeini Marjan , Baruah Probhonjon , Revkov Egor , Guo Yu Amanda , Rizzetto Simone , Wong Angeline M.L. , Solai Sundar , Nguyen Tin T. , Yeong Joe Poh Sheng , Iqbal Jabed , Tan Puay Hoon , Chowbay Balram , Dasgupta Ramanuj , Skanderup Anders J.
Published: March 2023

Supplementary Tables
Supplementary Table 2 from Host-Dependent Phenotypic Resistance to EGFR Tyrosine Kinase Inhibitors
Authors: Haga Yuya , Marrocco Ilaria , Noronha Ashish , Uribe Mary Luz , Nataraj Nishanth Belugali , Sekar Arunachalam , Drago-Garcia Diana , Borgoni Simone , Lindzen Moshit , Giri Suvendu , Wiemann Stefan , Tsutsumi Yasuo , Yarden Yosef
Published: March 2023

Supplementary Excel File 2
Supplementary table 2 from Nonsense-Mediated RNA Decay Is a Unique Vulnerability of Cancer Cells Harboring SF3B1 or U2AF1 Mutations
Authors: Cheruiyot Abigael , Li Shan , Nonavinkere Srivatsan Sridhar , Ahmed Tanzir , Chen Yuhao , Lemacon Delphine S. , Li Ying , Yang Zheng , Wadugu Brian A. , Warner Wayne A. , Pruett-Miller Shondra M. , Obeng Esther A. , Link Daniel C. , He Dalin , Xiao Fei , Wang Xiaowei , Bailis Julie M. , Walter Matthew J. , You Zhongsheng
Published: March 2023

Supplementary table 2
Supplementary methods from Nonsense-Mediated RNA Decay Is a Unique Vulnerability of Cancer Cells Harboring SF3B1 or U2AF1 Mutations
Authors: Cheruiyot Abigael , Li Shan , Nonavinkere Srivatsan Sridhar , Ahmed Tanzir , Chen Yuhao , Lemacon Delphine S. , Li Ying , Yang Zheng , Wadugu Brian A. , Warner Wayne A. , Pruett-Miller Shondra M. , Obeng Esther A. , Link Daniel C. , He Dalin , Xiao Fei , Wang Xiaowei , Bailis Julie M. , Walter Matthew J. , You Zhongsheng
Published: March 2023

Supplementary methods
Supplementary Data from Epigenetic Induction of Mitochondrial Fission Is Required for Maintenance of Liver Cancer–Initiating Cells
Authors: Tang Miaoling , Yang Meisongzhu , Wu Geyan , Mo Shuang , Wu Xingui , Zhang Shuxia , Yu Ruyuan , Hu Yameng , Xu Yingru , Li Ziwen , Liao Xinyi , Li Jun , Song Libing
Published: March 2023

This document contains Supplemental Materials and Methods and Supplementary Data
Supplementary Data from EMT Transcription Factor ZEB1 Represses the Mutagenic POLθ-Mediated End-Joining Pathway in Breast Cancers
Authors: Prodhomme Mélanie K. , Pommier Roxane M. , Franchet Camille , Fauvet Frédérique , Bergoglio Valérie , Brousset Pierre , Morel Anne-Pierre , Brunac Anne-Cécile , Devouassoux-Shisheboran Mojgan , Petrilli Virginie , Moyret-Lalle Caroline , Hoffmann Jean-Sébastien , Puisieux Alain , Tissier Agnès
Published: March 2023

Supplementary figures and figure legends
cohort_meta from Sleeping Beauty Transposon Mutagenesis Identifies Genes Driving the Initiation and Metastasis of Uterine Leiomyosarcoma
Authors: Kodama Michiko , Shimura Hiroko , Tien Jean C. , Newberg Justin Y. , Kodama Takahiro , Wei Zhubo , Rangel Roberto , Yoshihara Kosuke , Kuruma Airi , Nakae Aya , Hashimoto Kae , Sawada Kenjiro , Kimura Tadashi , Jenkins Nancy A. , Copeland Neal G.
Published: March 2023

bed file
Supplementary Data from Sleeping Beauty Transposon Mutagenesis Identifies Genes Driving the Initiation and Metastasis of Uterine Leiomyosarcoma
Authors: Kodama Michiko , Shimura Hiroko , Tien Jean C. , Newberg Justin Y. , Kodama Takahiro , Wei Zhubo , Rangel Roberto , Yoshihara Kosuke , Kuruma Airi , Nakae Aya , Hashimoto Kae , Sawada Kenjiro , Kimura Tadashi , Jenkins Nancy A. , Copeland Neal G.
Published: March 2023

Supplementary figure
S. Table 2 from Sleeping Beauty Transposon Mutagenesis Identifies Genes Driving the Initiation and Metastasis of Uterine Leiomyosarcoma
Authors: Kodama Michiko , Shimura Hiroko , Tien Jean C. , Newberg Justin Y. , Kodama Takahiro , Wei Zhubo , Rangel Roberto , Yoshihara Kosuke , Kuruma Airi , Nakae Aya , Hashimoto Kae , Sawada Kenjiro , Kimura Tadashi , Jenkins Nancy A. , Copeland Neal G.
Published: March 2023

IHC data of human samples (ZNF217)
S Table 3 from Sleeping Beauty Transposon Mutagenesis Identifies Genes Driving the Initiation and Metastasis of Uterine Leiomyosarcoma
Authors: Kodama Michiko , Shimura Hiroko , Tien Jean C. , Newberg Justin Y. , Kodama Takahiro , Wei Zhubo , Rangel Roberto , Yoshihara Kosuke , Kuruma Airi , Nakae Aya , Hashimoto Kae , Sawada Kenjiro , Kimura Tadashi , Jenkins Nancy A. , Copeland Neal G.
Published: March 2023

gCIS analysis of metastases screen
S Table 1 from Sleeping Beauty Transposon Mutagenesis Identifies Genes Driving the Initiation and Metastasis of Uterine Leiomyosarcoma
Authors: Kodama Michiko , Shimura Hiroko , Tien Jean C. , Newberg Justin Y. , Kodama Takahiro , Wei Zhubo , Rangel Roberto , Yoshihara Kosuke , Kuruma Airi , Nakae Aya , Hashimoto Kae , Sawada Kenjiro , Kimura Tadashi , Jenkins Nancy A. , Copeland Neal G.
Published: March 2023

gCIS analysis of primary screen
Supplementary Table S5 from YTHDF1 Promotes Gastric Carcinogenesis by Controlling Translation of FZD7
Authors: Pi Jingnan , Wang Wen , Ji Ming , Wang Xiaoshuang , Wei Xueju , Jin Jing , Liu Tao , Qiang Jiaqi , Qi Zhihong , Li Feng , Liu Yue , Ma Yanni , Si Yanmin , Huo Yue , Gao Yufeng , Chen Yiying , Dong Lei , Su Rui , Chen Jianjun , Rao Shuan , Yi Ping , Yu Shuyang , Wang Fang , Yu Jia
Published: March 2023

Association between YTHDF1 levels in gastric cancer and clinical findings. Related to Figure 1.
Supplementary Table S4 from YTHDF1 Promotes Gastric Carcinogenesis by Controlling Translation of FZD7
Authors: Pi Jingnan , Wang Wen , Ji Ming , Wang Xiaoshuang , Wei Xueju , Jin Jing , Liu Tao , Qiang Jiaqi , Qi Zhihong , Li Feng , Liu Yue , Ma Yanni , Si Yanmin , Huo Yue , Gao Yufeng , Chen Yiying , Dong Lei , Su Rui , Chen Jianjun , Rao Shuan , Yi Ping , Yu Shuyang , Wang Fang , Yu Jia
Published: March 2023

Mutations of YTHDF1 in various cancers.
Supplementary Materials and Methods from YTHDF1 Promotes Gastric Carcinogenesis by Controlling Translation of FZD7
Authors: Pi Jingnan , Wang Wen , Ji Ming , Wang Xiaoshuang , Wei Xueju , Jin Jing , Liu Tao , Qiang Jiaqi , Qi Zhihong , Li Feng , Liu Yue , Ma Yanni , Si Yanmin , Huo Yue , Gao Yufeng , Chen Yiying , Dong Lei , Su Rui , Chen Jianjun , Rao Shuan , Yi Ping , Yu Shuyang , Wang Fang , Yu Jia
Published: March 2023

Supplementary Materials and Methods
Supplementary Figure S3 from YTHDF1 Promotes Gastric Carcinogenesis by Controlling Translation of FZD7
Authors: Pi Jingnan , Wang Wen , Ji Ming , Wang Xiaoshuang , Wei Xueju , Jin Jing , Liu Tao , Qiang Jiaqi , Qi Zhihong , Li Feng , Liu Yue , Ma Yanni , Si Yanmin , Huo Yue , Gao Yufeng , Chen Yiying , Dong Lei , Su Rui , Chen Jianjun , Rao Shuan , Yi Ping , Yu Shuyang , Wang Fang , Yu Jia
Published: March 2023

Screening of YTHDF1 target genes in gastric cancer.
Supplementary Data from Gene Fusions Create Partner and Collateral Dependencies Essential to Cancer Cell Survival
Authors: Gillani Riaz , Seong Bo Kyung A. , Crowdis Jett , Conway Jake R. , Dharia Neekesh V. , Alimohamed Saif , Haas Brian J. , Han Kyuho , Park Jihye , Dietlein Felix , He Meng Xiao , Imamovic Alma , Ma Clement , Bassik Michael C. , Boehm Jesse S. , Vazquez Francisca , Gusev Alexander , Liu David , Janeway Katherine A. , McFarland James M. , Stegmaier Kimberly , Van Allen Eliezer M.
Published: March 2023

Supplementary Data from Gene Fusions Create Partner and Collateral Dependencies Essential to Cancer Cell Survival
Supplementary Data from SMARCA2 Is a Novel Interactor of NSD2 and Regulates Prometastatic PTP4A3 through Chromatin Remodeling in t(4;14) Multiple Myeloma
Authors: Chong Phyllis S.Y. , Chooi Jing Yuan , Lim Julia S.L. , Toh Sabrina Hui Min , Tan Tuan Zea , Chng Wee-Joo
Published: March 2023

Figure S1-S8, Table S1-S2
Supplementary data from PBRM1 Deficiency Confers Synthetic Lethality to DNA Repair Inhibitors in Cancer
Authors: Chabanon Roman M. , Morel Daphné , Eychenne Thomas , Colmet-Daage Léo , Bajrami Ilirjana , Dorvault Nicolas , Garrido Marlène , Meisenberg Cornelia , Lamb Andrew , Ngo Carine , Hopkins Suzanna R. , Roumeliotis Theodoros I. , Jouny Samuel , Hénon Clémence , Kawai-Kawachi Asuka , Astier Clémence , Konde Asha , Del Nery Elaine , Massard Christophe , Pettitt Stephen J. , Margueron Raphaël , Choudhary Jyoti S. , Almouzni Geneviève , Soria Jean-Charles , Deutsch Eric , Downs Jessica A. , Lord Christopher J. , Postel-Vinay Sophie
Published: March 2023

Supplementary data from PBRM1 Deficiency Confers Synthetic Lethality to DNA Repair Inhibitors in Cancer
Supplementary Figure from PBRM1 Deficiency Confers Synthetic Lethality to DNA Repair Inhibitors in Cancer
Authors: Chabanon Roman M. , Morel Daphné , Eychenne Thomas , Colmet-Daage Léo , Bajrami Ilirjana , Dorvault Nicolas , Garrido Marlène , Meisenberg Cornelia , Lamb Andrew , Ngo Carine , Hopkins Suzanna R. , Roumeliotis Theodoros I. , Jouny Samuel , Hénon Clémence , Kawai-Kawachi Asuka , Astier Clémence , Konde Asha , Del Nery Elaine , Massard Christophe , Pettitt Stephen J. , Margueron Raphaël , Choudhary Jyoti S. , Almouzni Geneviève , Soria Jean-Charles , Deutsch Eric , Downs Jessica A. , Lord Christopher J. , Postel-Vinay Sophie
Published: March 2023

Supplementary Figure from PBRM1 Deficiency Confers Synthetic Lethality to DNA Repair Inhibitors in Cancer
Supplemental File 2 from Cell Line–Specific Network Models of ER+ Breast Cancer Identify Potential PI3Kα Inhibitor Resistance Mechanisms and Drug Combinations
Authors: Gómez Tejeda Zañudo Jorge , Mao Pingping , Alcon Clara , Kowalski Kailey , Johnson Gabriela N. , Xu Guotai , Baselga Jose , Scaltriti Maurizio , Letai Anthony , Montero Joan , Albert Réka , Wagle Nikhil
Published: March 2023

Supplemental File 2. Excel file with the cbioportal data the genomic data analysis is based on.
Supplemental File 1 from Cell Line–Specific Network Models of ER+ Breast Cancer Identify Potential PI3Kα Inhibitor Resistance Mechanisms and Drug Combinations
Authors: Gómez Tejeda Zañudo Jorge , Mao Pingping , Alcon Clara , Kowalski Kailey , Johnson Gabriela N. , Xu Guotai , Baselga Jose , Scaltriti Maurizio , Letai Anthony , Montero Joan , Albert Réka , Wagle Nikhil
Published: March 2023

Supplemental File 1. Excel file with additional details on the mathematical model.
supplementary dataset from CRISPR-Mediated Kinome Editing Prioritizes a Synergistic Combination Therapy for FGFR1-Amplified Lung Cancer
Authors: Yang Zhang , Liang Shun-Qing , Yang Haitang , Xu Duo , Bruggmann Rémy , Gao Yanyun , Deng Haibin , Berezowska Sabina , Hall Sean R.R. , Marti Thomas M. , Kocher Gregor J. , Zhou Qinghua , Schmid Ralph A. , Peng Ren-Wang
Published: March 2023

supplementary dataset
Supplementary Data from Characterization of Peptides Targeting Metastatic Tumor Cells as Probes for Cancer Detection and Vehicles for Therapy Delivery
Authors: Subramanian Shraddha , Daquinag Alexes C. , AghaAmiri Solmaz , Ghosh Sukhen C. , Azhdarinia Ali , Kolonin Mikhail G.
Published: March 2023

Supplementary Figures 1-5
Supplementary Data from CRISPR-Mediated Kinome Editing Prioritizes a Synergistic Combination Therapy for FGFR1-Amplified Lung Cancer
Authors: Yang Zhang , Liang Shun-Qing , Yang Haitang , Xu Duo , Bruggmann Rémy , Gao Yanyun , Deng Haibin , Berezowska Sabina , Hall Sean R.R. , Marti Thomas M. , Kocher Gregor J. , Zhou Qinghua , Schmid Ralph A. , Peng Ren-Wang
Published: March 2023

Supplementary figures, tables
Supplementary Data from Association between Airport-Related Ultrafine Particles and Risk of Malignant Brain Cancer: A Multiethnic Cohort Study
Authors: Wu Anna H. , Fruin Scott , Larson Timothy V. , Tseng Chiu-Chen , Wu Jun , Yang Juan , Jain Jennifer , Shariff-Marco Salma , Inamdar Pushkar P. , Setiawan Veronica W. , Porcel Jacqueline , Stram Daniel O. , Le Marchand Loic , Ritz Beate , Cheng Iona
Published: March 2023

Supplementary Tables S1, S2 and S3
Table S5 from miR-766-5p Targets Super-Enhancers by Downregulating CBP and BRD4
Authors: Gen Yasuyuki , Muramatsu Tomoki , Inoue Jun , Inazawa Johji
Published: March 2023

Table S5
Table S4 from miR-766-5p Targets Super-Enhancers by Downregulating CBP and BRD4
Authors: Gen Yasuyuki , Muramatsu Tomoki , Inoue Jun , Inazawa Johji
Published: March 2023

Table S4
Table S3 from miR-766-5p Targets Super-Enhancers by Downregulating CBP and BRD4
Authors: Gen Yasuyuki , Muramatsu Tomoki , Inoue Jun , Inazawa Johji
Published: March 2023

Table S3
Table S2 from miR-766-5p Targets Super-Enhancers by Downregulating CBP and BRD4
Authors: Gen Yasuyuki , Muramatsu Tomoki , Inoue Jun , Inazawa Johji
Published: March 2023

Table S2
Table S1 from miR-766-5p Targets Super-Enhancers by Downregulating CBP and BRD4
Authors: Gen Yasuyuki , Muramatsu Tomoki , Inoue Jun , Inazawa Johji
Published: March 2023

Table S1
Figure S4 from Circ0008399 Interaction with WTAP Promotes Assembly and Activity of the m6A Methyltransferase Complex and Promotes Cisplatin Resistance in Bladder Cancer
Authors: Wei Wenjie , Sun Jiayin , Zhang Hui , Xiao Xingyuan , Huang Chao , Wang Liang , Zhong He , Jiang Yangkai , Zhang Xiaoping , Jiang Guosong
Published: March 2023

Knockdown of circ0008399/WTAP/TNFAIP3 pathway decreases the chemosensitivity of BC cells to CDDP.
Figure S1 from Circ0008399 Interaction with WTAP Promotes Assembly and Activity of the m6A Methyltransferase Complex and Promotes Cisplatin Resistance in Bladder Cancer
Authors: Wei Wenjie , Sun Jiayin , Zhang Hui , Xiao Xingyuan , Huang Chao , Wang Liang , Zhong He , Jiang Yangkai , Zhang Xiaoping , Jiang Guosong
Published: March 2023

EIF4A3 promotes the biogenesis of circ0008399 in BC.
Supplementary Figures from Acquired RAD51C Promoter Methylation Loss Causes PARP Inhibitor Resistance in High-Grade Serous Ovarian Carcinoma
Authors: Nesic Ksenija , Kondrashova Olga , Hurley Rachel M. , McGehee Cordelia D. , Vandenberg Cassandra J. , Ho Gwo-Yaw , Lieschke Elizabeth , Dall Genevieve , Bound Nirashaa , Shield-Artin Kristy , Radke Marc , Musafer Ashan , Chai Zi Qing , Ghamsari Mohammad Reza Eftekhariyan , Harrell Maria I. , Kee Damien , Olesen Inger , McNally Orla , Traficante Nadia , Study Australian Ovarian Cancer , DeFazio Anna , Bowtell David D.L. , Swisher Elizabeth M. , Weroha S. John , Nones Katia , Waddell Nicola , Kaufmann Scott H. , Dobrovic Alexander , Wakefield Matthew J. , Scott Clare L.
Published: March 2023

All supplementary figures for the manuscript
Figure S1 from Therapeutic Targeting of DGKA-Mediated Macropinocytosis Leads to Phospholipid Reprogramming in Tuberous Sclerosis Complex
Authors: Kovalenko Andrii , Sanin Andres , Kosmas Kosmas , Zhang Long , Wang Ji , Akl Elie W. , Giannikou Krinio , Probst Clemens K. , Hougard Thomas R. , Rue Ryan W. , Krymskaya Vera P. , Asara John M. , Lam Hilaire C. , Kwiatkowski David J. , Henske Elizabeth P. , Filippakis Harilaos
Published: March 2023

Ritanserin inhibits the proliferation of multiple TSC2-deficient cell lines, independently of autophagy.
Supplementary Table S1 from T Cells Expanded from PD-1+ Peripheral Blood Lymphocytes Share More Clones with Paired Tumor-Infiltrating Lymphocytes
Authors: Li Tiepeng , Zhao Lingdi , Yang Yonghao , Wang Yao , Zhang Yong , Guo Jindong , Chen Guangyu , Qin Peng , Xu Benling , Ma Baozhen , Zhang Fang , Shang Yiman , Li Qingjun , Zhang Kai , Yuan Dongfeng , Feng Chaojie , Ma Yan , Liu Zhiyong , Tian Zhichao , Li Hongle , Wang Shengdian , Gao Quanli
Published: March 2023

Additional information on patients included in Figure 1-5.
Supplementary Table S2 from Stomatin-Mediated Inhibition of the Akt Signaling Axis Suppresses Tumor Growth
Authors: Rahman Nor Idayu A. , Sato Akira , Tsevelnorov Khurelbaatar , Shimizu Akio , Komeno Masahiro , Ahmat Amin Mohammad Khusni Bin , Molla Md Rasel , Soh Joanne Ern Chi , Nguyen Le Kim Chi , Wada Akinori , Kawauchi Akihiro , Ogita Hisakazu
Published: March 2023

Supplementary Table S2
Table S6 from CstF64-Induced Shortening of the BID 3′UTR Promotes Esophageal Squamous Cell Carcinoma Progression by Disrupting ceRNA Cross-talk with ZFP36L2
Authors: Lin Ai , Ji Ping , Niu Xiangjie , Zhao Xuan , Chen Yamei , Liu Weiling , Liu Yachen , Fan Wenyi , Sun Yanxia , Miao Chuanwang , Zhang Shaosen , Tan Wen , Lin Dongxin , Wagner Eric J. , Wu Chen
Published: March 2023

MiRmap-predicted miRNAs that target both BID and ZFP36L2
Table S4 from CstF64-Induced Shortening of the BID 3′UTR Promotes Esophageal Squamous Cell Carcinoma Progression by Disrupting ceRNA Cross-talk with ZFP36L2
Authors: Lin Ai , Ji Ping , Niu Xiangjie , Zhao Xuan , Chen Yamei , Liu Weiling , Liu Yachen , Fan Wenyi , Sun Yanxia , Miao Chuanwang , Zhang Shaosen , Tan Wen , Lin Dongxin , Wagner Eric J. , Wu Chen
Published: March 2023

Significant shortened and overexpressed genes in 3 SCC datasets
Supplementary Dataset 2 from Characterizing Macrophage Diversity in Metastasis-Bearing Lungs Reveals a Lipid-Associated Macrophage Subset
Authors: Huggins Danielle N. , LaRue Rebecca S. , Wang Ying , Knutson Todd P. , Xu Yingzheng , Williams Jesse W. , Schwertfeger Kathryn L.
Published: March 2023

Differential gene expression analysis of biological replicate 2.