bluuebunny/crossref_metadata_2025 huggingface dataset:
Table S3 from RASSF1A Suppresses the Invasion and Metastatic Potential of Human Non–Small Cell Lung Cancer Cells by Inhibiting YAP Activation through the GEF-H1/RhoB Pathway
Authors: Dubois Fatéméh , Keller Maureen , Calvayrac Olivier , Soncin Fabrice , Hoa Lily , Hergovich Alexander , Parrini Maria-Carla , Mazières Julien , Vaisse-Lesteven Mélissa , Camonis Jacques , Levallet Guénaëlle , Zalcman Gérard
Published: April 2023

Short interfering RNA (siRNA) sequences used in this study.
Table S2 from RASSF1A Suppresses the Invasion and Metastatic Potential of Human Non–Small Cell Lung Cancer Cells by Inhibiting YAP Activation through the GEF-H1/RhoB Pathway
Authors: Dubois Fatéméh , Keller Maureen , Calvayrac Olivier , Soncin Fabrice , Hoa Lily , Hergovich Alexander , Parrini Maria-Carla , Mazières Julien , Vaisse-Lesteven Mélissa , Camonis Jacques , Levallet Guénaëlle , Zalcman Gérard
Published: April 2023

Plasmids used in this study.
Table S1 from RASSF1A Suppresses the Invasion and Metastatic Potential of Human Non–Small Cell Lung Cancer Cells by Inhibiting YAP Activation through the GEF-H1/RhoB Pathway
Authors: Dubois Fatéméh , Keller Maureen , Calvayrac Olivier , Soncin Fabrice , Hoa Lily , Hergovich Alexander , Parrini Maria-Carla , Mazières Julien , Vaisse-Lesteven Mélissa , Camonis Jacques , Levallet Guénaëlle , Zalcman Gérard
Published: April 2023

Human epithelial bronchial and lung cancer cell lines used in this study.
Supplemental Figure S6 from Autocrine Secretion of Progastrin Promotes the Survival and Self-Renewal of Colon Cancer Stem–like Cells
Authors: Giraud Julie , Failla Laura M. , Pascussi Jean-Marc , Lagerqvist Ebba L. , Ollier Jérémy , Finetti Pascal , Bertucci François , Ya Chu , Gasmi Imène , Bourgaux Jean-François , Prudhomme Michel , Mazard Thibault , Ait-Arsa Imade , Houhou Leila , Birnbaum Daniel , Pélegrin André , Vincent Charles , Ryall James G. , Joubert Dominique , Pannequin Julie , Hollande Frédéric
Published: April 2023

Annexin II expression is not enriched in cancer stem cell populations.
Supplemental Figure Legends from Autocrine Secretion of Progastrin Promotes the Survival and Self-Renewal of Colon Cancer Stem–like Cells
Authors: Giraud Julie , Failla Laura M. , Pascussi Jean-Marc , Lagerqvist Ebba L. , Ollier Jérémy , Finetti Pascal , Bertucci François , Ya Chu , Gasmi Imène , Bourgaux Jean-François , Prudhomme Michel , Mazard Thibault , Ait-Arsa Imade , Houhou Leila , Birnbaum Daniel , Pélegrin André , Vincent Charles , Ryall James G. , Joubert Dominique , Pannequin Julie , Hollande Frédéric
Published: April 2023

Legend for Supplemental Figures S1-S6.
Supplementary Figure 7 from Characterization of a c-Rel Inhibitor That Mediates Anticancer Properties in Hematologic Malignancies by Blocking NF-κB–Controlled Oxidative Stress Responses
Authors: Shono Yusuke , Tuckett Andrea Z. , Liou Hsiou-Chi , Doubrovina Ekaterina , Derenzini Enrico , Ouk Samedy , Tsai Jennifer J. , Smith Odette M. , Levy Emily R. , Kreines Fabiana M. , Ziegler Carly G.K. , Scallion Mary I. , Doubrovin Mikhail , Heller Glenn , Younes Anas , O'Reilly Richard J. , van den Brink Marcel R.M. , Zakrzewski Johannes L.
Published: April 2023

Effects of IT-901 on lymphocyte subsets in the spleen.
Supplementary Figure 3 from Characterization of a c-Rel Inhibitor That Mediates Anticancer Properties in Hematologic Malignancies by Blocking NF-κB–Controlled Oxidative Stress Responses
Authors: Shono Yusuke , Tuckett Andrea Z. , Liou Hsiou-Chi , Doubrovina Ekaterina , Derenzini Enrico , Ouk Samedy , Tsai Jennifer J. , Smith Odette M. , Levy Emily R. , Kreines Fabiana M. , Ziegler Carly G.K. , Scallion Mary I. , Doubrovin Mikhail , Heller Glenn , Younes Anas , O'Reilly Richard J. , van den Brink Marcel R.M. , Zakrzewski Johannes L.
Published: April 2023

IT-901 has a superior pharmacokinetic profile.
Supplemental Figure 1 from M-COPA, a Golgi Disruptor, Inhibits Cell Surface Expression of MET Protein and Exhibits Antitumor Activity against MET-Addicted Gastric Cancers
Authors: Ohashi Yoshimi , Okamura Mutsumi , Hirosawa Asaka , Tamaki Naomi , Akatsuka Akinobu , Wu Kuo-Ming , Choi Hyeong-Wook , Yoshimatsu Kentaro , Shiina Isamu , Yamori Takao , Dan Shingo
Published: April 2023

Dose-dependent effects on cell surface expression and processing of MET protein, and phosphorylation status of downstream signaling molecules.
Supplementary Table S6 from Quantitative Phosphotyrosine Profiling of Patient-Derived Xenografts Identifies Therapeutic Targets in Pediatric Leukemia
Authors: Dolai Sibasish , Sia Keith C.S. , Robbins Alissa K. , Zhong Ling , Heatley Sue L. , Vincent Tiffaney L. , Hochgräfe Falko , Sutton Rosemary , Kurmasheva Raushan T. , Revesz Tamas , White Deborah L. , Houghton Peter J. , Smith Malcolm A. , Teachey David T. , Daly Roger J. , Raftery Mark J. , Lock Richard B.
Published: April 2023

Average intensities of all light (PDX) and heavy (SILAC) Class I phosphosites p(STY) identified in 16 PDXs with Tyrosine kinase downstream targets highlighted in yellow.
Supplementary Table S5 from Quantitative Phosphotyrosine Profiling of Patient-Derived Xenografts Identifies Therapeutic Targets in Pediatric Leukemia
Authors: Dolai Sibasish , Sia Keith C.S. , Robbins Alissa K. , Zhong Ling , Heatley Sue L. , Vincent Tiffaney L. , Hochgräfe Falko , Sutton Rosemary , Kurmasheva Raushan T. , Revesz Tamas , White Deborah L. , Houghton Peter J. , Smith Malcolm A. , Teachey David T. , Daly Roger J. , Raftery Mark J. , Lock Richard B.
Published: April 2023

Average normalized ratio of phosphorylated tyrosine (pY) sites of tyrosine kinases identified in 16 PDXs
Supplementary Figure 6 from MYC-Driven Neuroblastomas Are Addicted to a Telomerase-Independent Function of Dyskerin
Authors: O'Brien Rosemary , Tran Sieu L. , Maritz Michelle F. , Liu Bing , Kong Cheng Fei , Purgato Stefania , Yang Chen , Murray Jayne , Russell Amanda J. , Flemming Claudia L. , von Jonquieres Georg , Pickett Hilda A. , London Wendy B. , Haber Michelle , Gunaratne Preethi H. , Norris Murray D. , Perini Giovanni , Fletcher Jamie I. , MacKenzie Karen L.
Published: April 2023

Supporting data; Supplementary Figure 6:Nucleolar dispersal of rpl5
Supplemental Figure from Discordant Haplotype Sequencing Identifies Functional Variants at the 2q33 Breast Cancer Risk Locus
Authors: Camp Nicola J. , Lin Wei-Yu , Bigelow Alex , Burghel George J. , Mosbruger Timothy L. , Parry Marina A. , Waller Rosalie G. , Rigas Sushilaben H. , Tai Pei-Yi , Berrett Kristofer , Rajamanickam Venkatesh , Cosby Rachel , Brock Ian W. , Jones Brandt , Connley Dan , Sargent Robert , Wang Guoying , Factor Rachel E. , Bernard Philip S. , Cannon-Albright Lisa , Knight Stacey , Abo Ryan , Werner Theresa L. , Reed Malcolm W.R. , Gertz Jason , Cox Angela
Published: April 2023

Supplemental Figure: Description of sample sets for the DNAseq and RNAseq experiments.
Supplementary Figure Legends from Androgen Receptor Upregulation Mediates Radioresistance after Ionizing Radiation
Authors: Spratt Daniel E. , Evans Michael J. , Davis Brian J. , Doran Michael G. , Lee Man Xia , Shah Neel , Wongvipat John , Carnazza Kathryn E. , Klee George G. , Polkinghorn William , Tindall Donald J. , Lewis Jason S. , Sawyers Charles L.
Published: April 2023

Supplementary Figure legends for Supplementary Figure 1 and 2
Supplementary Tables from Germinal Centers Determine the Prognostic Relevance of Tertiary Lymphoid Structures and Are Impaired by Corticosteroids in Lung Squamous Cell Carcinoma
Authors: Siliņa Karīna , Soltermann Alex , Attar Farkhondeh Movahedian , Casanova Ruben , Uckeley Zina M. , Thut Helen , Wandres Muriel , Isajevs Sergejs , Cheng Phil , Curioni-Fontecedro Alessandra , Foukas Periklis , Levesque Mitchell P. , Moch Holger , Linē Aija , van den Broek Maries
Published: April 2023

Contains Supplementary Tables S1-S7. Supplementary Table S1 - clinical information of the Riga cohort; Supplementary Table S2 - primer sequences; Supplementary Table S3 - antibody list; Supplementary Table S4 - information about the indications for which corticosteroid therapy was prescribed; Supplementary Table S5 - summary of gene expression analysis results; Supplementary Table S6 - multivariate Cox regression analysis of the whole Zurich cohort; Supplementary Table S7 - Spearman correlation analysis of histological and clinical parameters.
Supplementary Figure 2 from Androgen Receptor Upregulation Mediates Radioresistance after Ionizing Radiation
Authors: Spratt Daniel E. , Evans Michael J. , Davis Brian J. , Doran Michael G. , Lee Man Xia , Shah Neel , Wongvipat John , Carnazza Kathryn E. , Klee George G. , Polkinghorn William , Tindall Donald J. , Lewis Jason S. , Sawyers Charles L.
Published: April 2023

Supplementary Figure 2. A) In vitro comparison of LNCaP and LNCaP-AR and DNA damage post-radiotherapy. B) In vivo correlation of baseline AR-output using bioluminescence to tumor progression.
Supplementary Figure S5 from Germinal Centers Determine the Prognostic Relevance of Tertiary Lymphoid Structures and Are Impaired by Corticosteroids in Lung Squamous Cell Carcinoma
Authors: Siliņa Karīna , Soltermann Alex , Attar Farkhondeh Movahedian , Casanova Ruben , Uckeley Zina M. , Thut Helen , Wandres Muriel , Isajevs Sergejs , Cheng Phil , Curioni-Fontecedro Alessandra , Foukas Periklis , Levesque Mitchell P. , Moch Holger , Linē Aija , van den Broek Maries
Published: April 2023

Analysis of the correlation between TLS maturation stage and tumor stage or patients survival.
Supplementary Table S2 from A Heritable Missense Polymorphism in CDKN2A Confers Strong Risk of Childhood Acute Lymphoblastic Leukemia and Is Preferentially Selected during Clonal Evolution
Authors: Walsh Kyle M. , de Smith Adam J. , Hansen Helen M. , Smirnov Ivan V. , Gonseth Semira , Endicott Alyson A. , Xiao Jianqiao , Rice Terri , Fu Cecilia H. , McCoy Lucie S. , Lachance Daniel H. , Eckel-Passow Jeanette E. , Wiencke John K. , Jenkins Robert B. , Wrensch Margaret R. , Ma Xiaomei , Metayer Catherine , Wiemels Joseph L.
Published: April 2023

Top SNP associations in the 9p21.3 region evaluated in Hispanic ALL patients from CCLS and validated in European-ancestry ALL patients from COG, with functional annotation.
Supplementary Figure S4 from Germinal Centers Determine the Prognostic Relevance of Tertiary Lymphoid Structures and Are Impaired by Corticosteroids in Lung Squamous Cell Carcinoma
Authors: Siliņa Karīna , Soltermann Alex , Attar Farkhondeh Movahedian , Casanova Ruben , Uckeley Zina M. , Thut Helen , Wandres Muriel , Isajevs Sergejs , Cheng Phil , Curioni-Fontecedro Alessandra , Foukas Periklis , Levesque Mitchell P. , Moch Holger , Linē Aija , van den Broek Maries
Published: April 2023

The analysis of the correlation between gene expression and histological parameters or survival.
Supplementary Figure S1 from Germinal Centers Determine the Prognostic Relevance of Tertiary Lymphoid Structures and Are Impaired by Corticosteroids in Lung Squamous Cell Carcinoma
Authors: Siliņa Karīna , Soltermann Alex , Attar Farkhondeh Movahedian , Casanova Ruben , Uckeley Zina M. , Thut Helen , Wandres Muriel , Isajevs Sergejs , Cheng Phil , Curioni-Fontecedro Alessandra , Foukas Periklis , Levesque Mitchell P. , Moch Holger , Linē Aija , van den Broek Maries
Published: April 2023

Reference gene identification and patient selection for gene expression and IF analysis.
Supplementary Figure Legends from Germinal Centers Determine the Prognostic Relevance of Tertiary Lymphoid Structures and Are Impaired by Corticosteroids in Lung Squamous Cell Carcinoma
Authors: Siliņa Karīna , Soltermann Alex , Attar Farkhondeh Movahedian , Casanova Ruben , Uckeley Zina M. , Thut Helen , Wandres Muriel , Isajevs Sergejs , Cheng Phil , Curioni-Fontecedro Alessandra , Foukas Periklis , Levesque Mitchell P. , Moch Holger , Linē Aija , van den Broek Maries
Published: April 2023

Contains descriptions of Supplementary Figures S1-S5.
Supplementary Figure 1 from Endothelial Side Population Cells Contribute to Tumor Angiogenesis and Antiangiogenic Drug Resistance
Authors: Naito Hisamichi , Wakabayashi Taku , Kidoya Hiroyasu , Muramatsu Fumitaka , Takara Kazuhiro , Eino Daisuke , Yamane Keitaro , Iba Tomohiro , Takakura Nobuyuki
Published: April 2023

EC-SP and -MP cells are in the active phase of the cell cycle in the tumor microenvironment.
Supplementary Figure 2 from Germinal Centers Determine the Prognostic Relevance of Tertiary Lymphoid Structures and Are Impaired by Corticosteroids in Lung Squamous Cell Carcinoma
Authors: Siliņa Karīna , Soltermann Alex , Attar Farkhondeh Movahedian , Casanova Ruben , Uckeley Zina M. , Thut Helen , Wandres Muriel , Isajevs Sergejs , Cheng Phil , Curioni-Fontecedro Alessandra , Foukas Periklis , Levesque Mitchell P. , Moch Holger , Linē Aija , van den Broek Maries
Published: April 2023

Immunofluorescence images depicting three TLS maturation stages throughout the entire depth of each TLS.
Supplementary Video 2 from Eritoran Suppresses Colon Cancer by Altering a Functional Balance in Toll-like Receptors That Bind Lipopolysaccharide
Authors: Kuo Wei-Ting , Lee Tsung-Chun , Yu Linda Chia-Hui
Published: April 2023

Time lapse imaging of mouse tumor spheroid growth after exposure to LPS (1 μg/ml) for 48 h.
Supplementary Video 1 from Eritoran Suppresses Colon Cancer by Altering a Functional Balance in Toll-like Receptors That Bind Lipopolysaccharide
Authors: Kuo Wei-Ting , Lee Tsung-Chun , Yu Linda Chia-Hui
Published: April 2023

Time lapse imaging of mouse tumor spheroid growth for 48 h.
Supplementary Dataset 3 from Distinct Subtypes of Gastric Cancer Defined by Molecular Characterization Include Novel Mutational Signatures with Prognostic Capability
Authors: Li Xiangchun , Wu William K.K. , Xing Rui , Wong Sunny H. , Liu Yuexin , Fang Xiaodong , Zhang Yanlin , Wang Mengyao , Wang Jiaqian , Li Lin , Zhou Yong , Tang Senwei , Peng Shaoliang , Qiu Kunlong , Chen Longyun , Chen Kexin , Yang Huanming , Zhang Wei , Chan Matthew T.V. , Lu Youyong , Sung Joseph J.Y. , Yu Jun
Published: April 2023

Frequent mutations of newly identified SMGs across multiple human cancer types.
Supplementary Dataset 2 from Distinct Subtypes of Gastric Cancer Defined by Molecular Characterization Include Novel Mutational Signatures with Prognostic Capability
Authors: Li Xiangchun , Wu William K.K. , Xing Rui , Wong Sunny H. , Liu Yuexin , Fang Xiaodong , Zhang Yanlin , Wang Mengyao , Wang Jiaqian , Li Lin , Zhou Yong , Tang Senwei , Peng Shaoliang , Qiu Kunlong , Chen Longyun , Chen Kexin , Yang Huanming , Zhang Wei , Chan Matthew T.V. , Lu Youyong , Sung Joseph J.Y. , Yu Jun
Published: April 2023

DNA repair gene mutations, SMGs, and hotspot mutations in RGC and HGC.
Supplementary Table S1 from TG2 and NF-κB Signaling Coordinates the Survival of Mantle Cell Lymphoma Cells via IL6-Mediated Autophagy
Authors: Zhang Han , Chen Zheng , Miranda Roberto N. , Medeiros L. Jeffrey , McCarty Nami
Published: April 2023

Effects of paracrine IL-6 on colony formation in MCL cells.
Supplementary Methods and References from TG2 and NF-κB Signaling Coordinates the Survival of Mantle Cell Lymphoma Cells via IL6-Mediated Autophagy
Authors: Zhang Han , Chen Zheng , Miranda Roberto N. , Medeiros L. Jeffrey , McCarty Nami
Published: April 2023

Description of additional methods and procedures used in the study. Also includes Supplementary References.
Supplementary Figure legends from Drosophila Brat and Human Ortholog TRIM3 Maintain Stem Cell Equilibrium and Suppress Brain Tumorigenesis by Attenuating Notch Nuclear Transport
Authors: Mukherjee Subhas , Tucker-Burden Carol , Zhang Changming , Moberg Kenneth , Read Renee , Hadjipanayis Costas , Brat Daniel J.
Published: April 2023

This file contains Supplementary figure legends.
Supplementary Tables 1-9 from Exome-Scale Discovery of Hotspot Mutation Regions in Human Cancer Using 3D Protein Structure
Authors: Tokheim Collin , Bhattacharya Rohit , Niknafs Noushin , Gygax Derek M. , Kim Rick , Ryan Michael , Masica David L. , Karchin Rachel
Published: April 2023

Table S1: Hotspot regions identified by 3D HotMAPS and overlap with 1D HotMAPS algorithm. Table S2: Tumor-type specific hotspot regions identified by 3D HotMAPS, overlap with 1D HotMAPS, and charactersitic features with naïve bayes score. Table S3: Sample and coverage information for missense mutations mapping onto protein structures or models. Table S4: Genes with HotMAPS regions identified in TCGA tumor types without previous literature support. Table S5: Hotspot regions identified by the 1D algorithm only utilizing primary sequence. Table S6: Tumor-type specifc hotspot regions identified by the 1D algorithm only utilizing primary sequence. Table S7: Residues in 3D HotMAPS regions that overlap with UniProtKB annotations. Table S8: Contigency table of hotspot residues at protein-protein interfaces versus other mutated residues. Table S9: Blacklisted residues that have ambiguous mappings caused by tBLASTn.
Supplemental Figure 1 Brat protein expression is reduced in inscuteable driven brat RNAi neuroblasts at larval and adult stages. from Drosophila Brat and Human Ortholog TRIM3 Maintain Stem Cell Equilibrium and Suppress Brain Tumorigenesis by Attenuating Notch Nuclear Transport
Authors: Mukherjee Subhas , Tucker-Burden Carol , Zhang Changming , Moberg Kenneth , Read Renee , Hadjipanayis Costas , Brat Daniel J.
Published: April 2023

(A-H) Panels showing 3rd Inster larval brain. (A-D) Brain of normal larva expressing Brat protein. (E-H) Brain of brat-RNAi expressing larva showing reduced Brat protein. Scale bar: 10um. (I-X) Panels showing 5days old adult brain. (I-L and Q-T) Brain of control adult expressing Brat protein. (M-P and U-X) Brain of brat-RNAi expressing adults showing reduced Brat protein. Scare bar: (I-P) 100um and (Q-X) 10um. bratIR is brat-RNAi.
Supplementary Materials and Methods and Supplementary Figures 1 through 6 from Exome-Scale Discovery of Hotspot Mutation Regions in Human Cancer Using 3D Protein Structure
Authors: Tokheim Collin , Bhattacharya Rohit , Niknafs Noushin , Gygax Derek M. , Kim Rick , Ryan Michael , Masica David L. , Karchin Rachel
Published: April 2023

A detailed description of all methods, processing of mutations, and mapping to protein structure. Includes Fig S1 - Fig S6.
Supplemental Figure 1: Weight curves, DSS water consumption, colonoscopy and tumor localization in APCMin mice. from HuR Small-Molecule Inhibitor Elicits Differential Effects in Adenomatosis Polyposis and Colorectal Carcinogenesis
Authors: Lang Michaela , Berry David , Passecker Katharina , Mesteri Ildiko , Bhuju Sabin , Ebner Florian , Sedlyarov Vitaly , Evstatiev Rayko , Dammann Kyle , Loy Alexander , Kuzyk Orest , Kovarik Pavel , Khare Vineeta , Beibel Martin , Roma Guglielmo , Meisner-Kober Nicole , Gasche Christoph
Published: April 2023

Weight curves of AOM/DSS and APCMin mice, DSS water consummtion and large bowel tumorigenesis in APCMin mice
Supplementary Figure Legends from Low-Dose Paclitaxel Reduces S100A4 Nuclear Import to Inhibit Invasion and Hematogenous Metastasis of Cholangiocarcinoma
Authors: Cadamuro Massimiliano , Spagnuolo Gaia , Sambado Luisa , Indraccolo Stefano , Nardo Giorgia , Rosato Antonio , Brivio Simone , Caslini Chiara , Stecca Tommaso , Massani Marco , Bassi Nicolò , Novelli Eugenio , Spirli Carlo , Fabris Luca , Strazzabosco Mario
Published: April 2023

The legends for the supplementary figures 1-7
Supplementary Materials & Methods from DNMT1 Inhibition Reprograms Pancreatic Cancer Stem Cells via Upregulation of the miR-17-92 Cluster
Authors: Zagorac Sladjana , Alcala Sonia , Fernandez Bayon Gustavo , Bou Kheir Tony , Schoenhals Matthieu , González-Neira Anna , Fernandez Fraga Mario , Aicher Alexandra , Heeschen Christopher , Sainz Bruno
Published: April 2023

Supplementary Materials & Methods: Additional methods and materials not detailed in the main manuscript. Includes, details of the Illumina methylation array, differential methylation, genomic region and CGI analyses, as well as additional methods and details regarding antagomiRs, treatments, cell viability and apoptosis assays, cell cycle analysis, WB and RTqPCR, 5mC quantification, CRISPR/Cas9, and immunofluorescence and immunohistochemistry.
Supplementary Figure Legends from DNMT1 Inhibition Reprograms Pancreatic Cancer Stem Cells via Upregulation of the miR-17-92 Cluster
Authors: Zagorac Sladjana , Alcala Sonia , Fernandez Bayon Gustavo , Bou Kheir Tony , Schoenhals Matthieu , González-Neira Anna , Fernandez Fraga Mario , Aicher Alexandra , Heeschen Christopher , Sainz Bruno
Published: April 2023

Legends for the supplemental figures.
Supplementary Figures S1-S8 from Elucidation of the Roles of Tumor Integrin β1 in the Extravasation Stage of the Metastasis Cascade
Authors: Chen Michelle B. , Lamar John M. , Li Ran , Hynes Richard O. , Kamm Roger D.
Published: April 2023

In vitro microfluidics-based extravasation assays (S1); Knockdown of Î²1 integrin results in a reduction in extravasation rate (S2); Extravasation in vivo (S3); Analysis of adhesion rate in an endothelial monolayer microfluidic flow assay (S4); Visualization and scoring of transendothelial migration events in the vertical monolayer device (S5); Tumor cell protrusion dynamics in 3D collagen 1/fibrin mix matrices (S6); Î²1 integrin is required for invasion past the basement membrane (S7); Role of alpha integrins subunits in transendothelial migration in microvascular networks (S8).
Supplemental Figure Legend from IL17 Functions through the Novel REG3β–JAK2–STAT3 Inflammatory Pathway to Promote the Transition from Chronic Pancreatitis to Pancreatic Cancer
Authors: Loncle Celine , Bonjoch Laia , Folch-Puy Emma , Lopez-Millan Maria Belen , Lac Sophie , Molejon Maria Inés , Chuluyan Eduardo , Cordelier Pierre , Dubus Pierre , Lomberk Gwen , Urrutia Raul , Closa Daniel , Iovanna Juan L.
Published: April 2023

Legend for Supplemental Figure 1.
Figure S5 from A KDM5 Inhibitor Increases Global H3K4 Trimethylation Occupancy and Enhances the Biological Efficacy of 5-Aza-2′-Deoxycytidine
Authors: Leadem Benjamin R. , Kagiampakis Ioannis , Wilson Catherine , Cheung Tommy K. , Arnott David , Trojer Patrick , Classon Marie , Easwaran Hariharan , Baylin Stephen B.
Published: April 2023

Effects of KDM5i and DAC on enhancers and de novo super-enhancers
Supplementary Material; Supplementary Figures 1 and 2 and Supplementary Table 1 from Spatial Modeling of Drug Delivery Routes for Treatment of Disseminated Ovarian Cancer
Authors: Winner Kimberly R. Kanigel , Steinkamp Mara P. , Lee Rebecca J. , Swat Maciej , Muller Carolyn Y. , Moses Melanie E. , Jiang Yi , Wilson Bridget S.
Published: April 2023

Further details on model assumptions, statistical analysis, and model parameters. Supplementary Figure 1: Vascular Densities in Bowel and Omentum Metastatic Sites for Individual Patients Do Not Correlate. Supplementary Figure 2: Box Plots of Vascular Density in Patient Tumor Samples. Supplementary Table 1: Concentration Fits for IP and IV Compartments.
Supplementary Table S3 from Measurement of Endogenous versus Exogenous Formaldehyde–Induced DNA–Protein Crosslinks in Animal Tissues by Stable Isotope Labeling and Ultrasensitive Mass Spectrometry
Authors: Lai Yongquan , Yu Rui , Hartwell Hadley J. , Moeller Benjamin C. , Bodnar Wanda M. , Swenberg James A.
Published: April 2023

15 ppm Rat Exposure Results.
Figure S1 from Mathematical Modeling Reveals That Changes to Local Cell Density Dynamically Modulate Baseline Variations in Cell Growth and Drug Response
Authors: Greene James M. , Levy Doron , Herrada Sylvia P. , Gottesman Michael M. , Lavi Orit
Published: April 2023

Detailed information of the mathematical model calibrations . Panel A) Initial and final configurations of the experimental data used for model comparison. Panel B) Attraction and repulsion potentials used in the SDE model. Panel C) Quiescent transition rates.
Supplementary Table 1 from Cholesterol Metabolism and Prostate Cancer Lethality
Authors: Stopsack Konrad H. , Gerke Travis A. , Sinnott Jennifer A. , Penney Kathryn L. , Tyekucheva Svitlana , Sesso Howard D. , Andersson Swen-Olof , Andrén Ove , Cerhan James R. , Giovannucci Edward L. , Mucci Lorelei A. , Rider Jennifer R.
Published: April 2023

Cholesterol metabolism genes and association of their mRNA expression with lethal prostate cancer in the Health Professionals Follow-up Study cohort, expressed as unadjusted and Bonferroni-adjusted P-values from univariable logistic regression. Sources are expressed as Reactome numbers or as references if added based on prior literature.
Supplementary Table 7 from An Immune-Inflammation Gene Expression Signature in Prostate Tumors of Smokers
Authors: Prueitt Robyn L. , Wallace Tiffany A. , Glynn Sharon A. , Yi Ming , Tang Wei , Luo Jun , Dorsey Tiffany H. , Stagliano Katherine E. , Gillespie John W. , Hudson Robert S. , Terunuma Atsushi , Shoe Jennifer L. , Haines Diana C. , Yfantis Harris G. , Han Misop , Martin Damali N. , Jordan Symone V. , Borin James F. , Naslund Michael J. , Alexander Richard B. , Stephens Robert M. , Loffredo Christopher A. , Lee Dong H. , Putluri Nagireddy , Sreekumar Arun , Hurwitz Arthur A. , Ambs Stefan
Published: April 2023

Supplementary Table 7: Genes differently expressed between current and never smokers in microdissected prostate tumors.
Supplementary Figure S5 from Src Inhibition Blocks c-Myc Translation and Glucose Metabolism to Prevent the Development of Breast Cancer
Authors: Jain Shalini , Wang Xiao , Chang Chia-Chi , Ibarra-Drendall Catherine , Wang Hai , Zhang Qingling , Brady Samuel W. , Li Ping , Zhao Hong , Dobbs Jessica , Kyrish Matt , Tkaczyk Tomasz S. , Ambrose Adrian , Sistrunk Christopher , Arun Banu K. , Richards-Kortum Rebecca , Jia Wei , Seewaldt Victoria L. , Yu Dihua
Published: April 2023

Saracatinib inhibits proliferation and c-Myc, and GLUT1 in MFPs of ER- MMTV-neu* mouse model.
Supplementary Table 10 from An Immune-Inflammation Gene Expression Signature in Prostate Tumors of Smokers
Authors: Prueitt Robyn L. , Wallace Tiffany A. , Glynn Sharon A. , Yi Ming , Tang Wei , Luo Jun , Dorsey Tiffany H. , Stagliano Katherine E. , Gillespie John W. , Hudson Robert S. , Terunuma Atsushi , Shoe Jennifer L. , Haines Diana C. , Yfantis Harris G. , Han Misop , Martin Damali N. , Jordan Symone V. , Borin James F. , Naslund Michael J. , Alexander Richard B. , Stephens Robert M. , Loffredo Christopher A. , Lee Dong H. , Putluri Nagireddy , Sreekumar Arun , Hurwitz Arthur A. , Ambs Stefan
Published: April 2023

Supplementary Table 10: Genes differently expressed between nicotine-treated and untreated LNCaP cells.
Supplementary Figure S2 from Src Inhibition Blocks c-Myc Translation and Glucose Metabolism to Prevent the Development of Breast Cancer
Authors: Jain Shalini , Wang Xiao , Chang Chia-Chi , Ibarra-Drendall Catherine , Wang Hai , Zhang Qingling , Brady Samuel W. , Li Ping , Zhao Hong , Dobbs Jessica , Kyrish Matt , Tkaczyk Tomasz S. , Ambrose Adrian , Sistrunk Christopher , Arun Banu K. , Richards-Kortum Rebecca , Jia Wei , Seewaldt Victoria L. , Yu Dihua
Published: April 2023

Saracatinib increases tumor free and overall survival in ER- mammary mouse models.
Supplementary Figure 6 from Checkpoint Antibodies but not T Cell–Recruiting Diabodies Effectively Synergize with TIL-Inducing γ-Irradiation
Authors: Hettich Michael , Lahoti Jayashree , Prasad Shruthi , Niedermann Gabriele
Published: April 2023

Cell death/apoptosis of CD8+ TILs from small tumors.
Supplementary Movie 1 from Early Prediction of Cancer Progression by Depth-Resolved Nanoscale Mapping of Nuclear Architecture from Unstained Tissue Specimens
Authors: Uttam Shikhar , Pham Hoa V. , LaFace Justin , Leibowitz Brian , Yu Jian , Brand Randall E. , Hartman Douglas J. , Liu Yang
Published: April 2023

Supplementary Movie 1: This movie shows the depth-resolved nuclear architecture map of unstained tissue, derived from nanoNAM of segmented epithelial cell nuclei, reveals gradually changing patterns over depth (0.045 micron step size).
Supplementary Figure 5 from Checkpoint Antibodies but not T Cell–Recruiting Diabodies Effectively Synergize with TIL-Inducing γ-Irradiation
Authors: Hettich Michael , Lahoti Jayashree , Prasad Shruthi , Niedermann Gabriele
Published: April 2023

Tumor outgrowth after late-stage bsAb injection (from day 10).
Supplementary Figures S1-S12 from Early Prediction of Cancer Progression by Depth-Resolved Nanoscale Mapping of Nuclear Architecture from Unstained Tissue Specimens
Authors: Uttam Shikhar , Pham Hoa V. , LaFace Justin , Leibowitz Brian , Yu Jian , Brand Randall E. , Hartman Douglas J. , Liu Yang
Published: April 2023

Supplementary Figures S1-S12: Simulation to illustrate the concept of depth-resolved drOPD imaging to detect small local changes of refractive index (S1); Effect of changing refractive index of the scattering object on drOPD (S2); Demonstration of depth-resolved capability of drOPD imaging (S3); Workflow for nanoscale nuclear architecture mapping (S4); Squared gradient plot versus the axial position of objective lens at wavelength of 550 nm (S5); The dependence of focal plane on the wavelength (S6); Correction for chromatic aberration-induced image distortion (S7); Image registration based on the transmission phase images of unstained and stained tissue (S8); Correction for baseline shift (S9); Reproducibility of mean-drOPD value at a single-nucleus level (S10); Mouse treatment protocol to induce colitis-associated carcinogenesis (S11); nanoNAM performed on cell nuclei from transgenic mouse model of colon carcinogenesis ApcMin/+ mice (S12).
Supplementary Figure 3 from Checkpoint Antibodies but not T Cell–Recruiting Diabodies Effectively Synergize with TIL-Inducing γ-Irradiation
Authors: Hettich Michael , Lahoti Jayashree , Prasad Shruthi , Niedermann Gabriele
Published: April 2023

Immunotherapy treatment of large tumors fails without hRT.
Supplementary Figure 5 from Neural Cell Adhesion Protein CNTN1 Promotes the Metastatic Progression of Prostate Cancer
Authors: Yan Judy , Ojo Diane , Kapoor Anil , Lin Xiaozeng , Pinthus Jehonathan H. , Aziz Tariq , Bismar Tarek A. , Wei Fengxiang , Wong Nicholas , De Melo Jason , Cutz Jean-Claude , Major Pierre , Wood Geoffrey , Peng Hao , Tang Damu
Published: April 2023

The number of differentially expressed genes for DU145 PCSCs shCTRL compared to shCNTN1 and DU145 EV compared to CNTN1 associated with disease and function.
Supplementary Materials and Methods from Therapy-Educated Mesenchymal Stem Cells Enrich for Tumor-Initiating Cells
Authors: Timaner Michael , Letko-Khait Nitzan , Kotsofruk Ruslana , Benguigui Madeleine , Beyar-Katz Ofrat , Rachman-Tzemah Chen , Raviv Ziv , Bronshtein Tomer , Machluf Marcelle , Shaked Yuval
Published: April 2023

Detailed description of several methods mentioned in the manuscript
supplementary figure legends from miR-182-5p Induced by STAT3 Activation Promotes Glioma Tumorigenesis
Authors: Xue Jianfei , Zhou Aidong , Wu Yamei , Morris Saint-Aaron , Lin Kangyu , Amin Samirkumar , Verhaak Roeland , Fuller Gregory , Xie Keping , Heimberger Amy B. , Huang Suyun
Published: April 2023

supplementary figure legends
Supplementary figure 3 from miR-182-5p Induced by STAT3 Activation Promotes Glioma Tumorigenesis
Authors: Xue Jianfei , Zhou Aidong , Wu Yamei , Morris Saint-Aaron , Lin Kangyu , Amin Samirkumar , Verhaak Roeland , Fuller Gregory , Xie Keping , Heimberger Amy B. , Huang Suyun
Published: April 2023

Supplementary figure 3
Supplementary Figures from DNA-PKcs and PARP1 Bind to Unresected Stalled DNA Replication Forks Where They Recruit XRCC1 to Mediate Repair
Authors: Ying Songmin , Chen Zhihui , Medhurst Annette L. , Neal Jessica A. , Bao Zhengqiang , Mortusewicz Oliver , McGouran Joanna , Song Xinming , Shen Huahao , Hamdy Freddie C. , Kessler Benedikt M. , Meek Katheryn , Helleday Thomas
Published: April 2023

Supplementary Figures. Sup. Fig. 1: Recuirtment of XRCC1 to stalled DNA replication forks is prevented by CtIP. Sup. Fig. 2: CK2 actiivty is required for stabilization of XRCC1 protein and its recuirtment to stalled forks. Sup. Fig. 3: Interaction of XRCC1 and DNA-PKcs complex is not essential for recruitment of phosphorylated DNA-PKcs foci to stalled forks. Sup. Fig. 4: DNA-PKcs is phosphorylated and recruited to sites of stalled replication forks. Sup. Fig. 5: Roles of DNA-PKcs in the recovery of replication stress-induced damage. Sup. Fig. 6: DNA-PKcs recruits XRCC1 to stalled replication forks.
Supplemental Methods from Preclinical Efficacy of Bevacizumab with CRLX101, an Investigational Nanoparticle–Drug Conjugate, in Treatment of Metastatic Triple-Negative Breast Cancer
Authors: Pham Elizabeth , Yin Melissa , Peters Christian G. , Lee Christina R. , Brown Donna , Xu Ping , Man Shan , Jayaraman Lata , Rohde Ellen , Chow Annabelle , Lazarus Douglas , Eliasof Scott , Foster F. Stuart , Kerbel Robert S.
Published: April 2023

Description of additional methods and procedures used in the study.
Suppl Materials and Methods from Identification of RNA-Binding Protein LARP4B as a Tumor Suppressor in Glioma
Authors: Koso Hideto , Yi Hungtsung , Sheridan Paul , Miyano Satoru , Ino Yasushi , Todo Tomoki , Watanabe Sumiko
Published: April 2023

Supplementary Materials and Methods
Suppl Figure S5 from Identification of RNA-Binding Protein LARP4B as a Tumor Suppressor in Glioma
Authors: Koso Hideto , Yi Hungtsung , Sheridan Paul , Miyano Satoru , Ino Yasushi , Todo Tomoki , Watanabe Sumiko
Published: April 2023

Larp4b insertions in liver cancer and gastrointestinal tumors
Supplemental Figure Legends from STING Promotes the Growth of Tumors Characterized by Low Antigenicity via IDO Activation
Authors: Lemos Henrique , Mohamed Eslam , Huang Lei , Ou Rong , Pacholczyk Gabriela , Arbab Ali S. , Munn David , Mellor Andrew L.
Published: April 2023

Legends for Supplemental Figures S1-S3.
Supplemental Figures 1 through 7 from Lysyl Oxidase Is a Strong Determinant of Tumor Cell Colonization in Bone
Authors: Reynaud Caroline , Ferreras Laura , Di Mauro Paola , Kan Casina , Croset Martine , Bonnelye Edith , Pez Floriane , Thomas Clémence , Aimond Géraldine , Karnoub Antoine E. , Brevet Marie , Clézardin Philippe
Published: April 2023

Figure S1: LOX expression and clinical outcomes. Figure S2:The LOX inhibitor βAPN inhibits osteolytic lesion formation in vivo. Figure S3: Measurement of LOX enzymatic activity. Figure S4: Correlation analysis of the expression intensity of LOX and IL-6. Figure S5: Effects of LOX expression on EMT in Hct116 colorectal cancer cells. Figure S6: Effect of LOX on attachment of colorectal cancer cells to fibronectin. Figure S7: LOX enhances survival of Hct116 colorectal cancer cells.
Supplementary information from Genomic Landscape Established by Allelic Imbalance in the Cancerization Field of a Normal Appearing Airway
Authors: Jakubek Yasminka , Lang Wenhua , Vattathil Selina , Garcia Melinda , Xu Li , Huang Lili , Yoo Suk-Young , Shen Li , Lu Wei , Chow Chi-Wan , Weber Zachary , Davies Gareth , Huang Jing , Behrens Carmen , Kalhor Neda , Moran Cesar , Fujimoto Junya , Mehran Reza , El-Zein Randa , Swisher Stephen G. , Wang Jing , Fowler Jerry , Spira Avrum E. , Ehli Erik A. , Wistuba Ignacio I. , Scheet Paul , Kadara Humam
Published: April 2023

Supplementary information including supplementary methods, supplementary tables and figures as well as supplementary figure legends. Supplementary Figure 1. HapLOH results for matched normal large airway and NSCLC tumor from case 18 Supplementary Figure 2. Distribution of posterior probabilities for airway events called by hapLOH Supplementary Figure 3: Allelic imbalance events detected in normal-appearing airway brushings Supplementary Figure 4. Event classification using B-allele frequencies and log R ratios Supplementary Figure 5. Effect of allelic imbalance on B-allele frequencies Supplementary Figure 6: Distribution of focal and arm airway events
Supplementary Figure 2 from Small-Molecule Inhibition of GCNT3 Disrupts Mucin Biosynthesis and Malignant Cellular Behaviors in Pancreatic Cancer
Authors: Rao Chinthalapally V. , Janakiram Naveena B. , Madka Venkateshwar , Kumar Gaurav , Scott Edgar J. , Pathuri Gopal , Bryant Taylor , Kutche Hannah , Zhang Yuting , Biddick Laura , Gali Hariprasad , Zhao Yan D. , Lightfoot Stan , Mohammed Altaf
Published: April 2023

Histological images showing progression of PanIN lesions to ductal carcinoma presenting with stage-wise increases in EGFR, GCNT3, and mucins as the disease progresses.
Figure S4 from TGFβ Signaling in the Pancreatic Tumor Microenvironment Promotes Fibrosis and Immune Evasion to Facilitate Tumorigenesis
Authors: Principe Daniel R. , DeCant Brian , Mascariñas Emman , Wayne Elizabeth A. , Diaz Andrew M. , Akagi Naomi , Hwang Rosa , Pasche Boris , Dawson David W. , Fang Deyu , Bentrem David J. , Munshi Hidayatullah G. , Jung Barbara , Grippo Paul J.
Published: April 2023

Figure S4. Epithelial and Global TGFBR Deficiency Have Opposing Effects on Tumor Associated Desmoplasia
Supplementary Figure S5 from Heparanase 2 Attenuates Head and Neck Tumor Vascularity and Growth
Authors: Gross-Cohen Miriam , Feld Sari , Doweck Ilana , Neufeld Gera , Hasson Peleg , Arvatz Gil , Barash Uri , Naroditsky Inna , Ilan Neta , Vlodavsky Israel
Published: April 2023

Tumor xenografts.
Supplementary Figure Legends from Systemic DC Activation Modulates the Tumor Microenvironment and Shapes the Long-Lived Tumor-Specific Memory Mediated by CD8+ T Cells
Authors: Shimizu Kanako , Yamasaki Satoru , Shinga Jun , Sato Yusuke , Watanabe Takashi , Ohara Osamu , Kuzushima Kiyotaka , Yagita Hideo , Komuro Yoshiko , Asakura Miki , Fujii Shin-ichiro
Published: April 2023

Supplementary Figure Legends
Supplemental Figure 1 Schematics of the tetracycline inducible-FIP1C-MTB and inducible knock-out FIP1C mouse models from Rab11-FIP1C Is a Critical Negative Regulator in ErbB2-Mediated Mammary Tumor Progression
Authors: Boulay Pierre-Luc , Mitchell Louise , Turpin Jason , Huot-Marchand Julie-Émilie , Lavoie Cynthia , Sanguin-Gendreau Virginie , Jones Laura , Mitra Shreya , Livingstone Julie M. , Campbell Shirley , Hallett Michael , Mills Gordon B. , Park Morag , Chodosh Lewis , Strathdee Douglas , Norman Jim C. , Muller William J.
Published: April 2023

This Supplemental Figure 1 describes engineering of FIP1C inducible mouse model and condition knockout. Moreover, Supplemental Figure 1 provides data related to the elucidation of the physiological role of FIP1C during mamamry gland outgrowth as a supplement of Figure 1. Overall,the modulation of FIP1C levels in mammary gland does not affect normal mammary gland development.
Table 1 from Stress Chaperone Mortalin Contributes to Epithelial-to-Mesenchymal Transition and Cancer Metastasis
Authors: Na Youjin , Kaul Sunil C. , Ryu Jihoon , Lee Jung-Sun , Ahn Hyo Min , Kaul Zeenia , Kalra Rajkumar S. , Li Ling , Widodo Nashi , Yun Chae-Ok , Wadhwa Renu
Published: April 2023

Fold change in expression of genes in Mortalin-overexpressing MDA cells as compared to the control
Supplementary Figure 2 from Stress Chaperone Mortalin Contributes to Epithelial-to-Mesenchymal Transition and Cancer Metastasis
Authors: Na Youjin , Kaul Sunil C. , Ryu Jihoon , Lee Jung-Sun , Ahn Hyo Min , Kaul Zeenia , Kalra Rajkumar S. , Li Ling , Widodo Nashi , Yun Chae-Ok , Wadhwa Renu
Published: April 2023

Correlation of mortalin expression with cell migration capacity. Expression level of mortalin in different cancer cells as determined by Western blotting (A). Correlation of mortalin expression with migration potential of cancer cells as determined by wound-scratch assay (B). A549 showed highest level of mortalin expression and migration capacity.
Supplementary Figure 1 from Stress Chaperone Mortalin Contributes to Epithelial-to-Mesenchymal Transition and Cancer Metastasis
Authors: Na Youjin , Kaul Sunil C. , Ryu Jihoon , Lee Jung-Sun , Ahn Hyo Min , Kaul Zeenia , Kalra Rajkumar S. , Li Ling , Widodo Nashi , Yun Chae-Ok , Wadhwa Renu
Published: April 2023

Upreguation of mortalin in advanced grade, poorly differentiated and metastatic tumors.
Supplementary Table 1 from Novel ß-HPV49 Transgenic Mouse Model of Upper Digestive Tract Cancer
Authors: Viarisio Daniele , Müller-Decker Karin , Zanna Paola , Kloz Ulrich , Aengeneyndt Birgit , Accardi Rosita , Flechtenmacher Christa , Gissmann Lutz , Tommasino Massimo
Published: April 2023

Sequences of the different primers used for PCR and RT-PCR analyses.
Supplementary Table S6 from Long Noncoding RNA pancEts-1 Promotes Neuroblastoma Progression through hnRNPK-Mediated β-Catenin Stabilization
Authors: Li Dan , Wang Xiaojing , Mei Hong , Fang Erhu , Ye Lin , Song Huajie , Yang Feng , Li Huanhuan , Huang Kai , Zheng Liduan , Tong Qiangsong
Published: April 2023

Table S6 show the univariate and multivariate analysis of prognostic factors in 88 NB patients derived from public dataset (GSE16476)
Legend supplementary Figures from Novel ß-HPV49 Transgenic Mouse Model of Upper Digestive Tract Cancer
Authors: Viarisio Daniele , Müller-Decker Karin , Zanna Paola , Kloz Ulrich , Aengeneyndt Birgit , Accardi Rosita , Flechtenmacher Christa , Gissmann Lutz , Tommasino Massimo
Published: April 2023

Legends of supplementary Figures 1-3
Supplementary Table from Circulating Omentin as a Novel Biomarker for Colorectal Cancer Risk: Data from the EPIC–Potsdam Cohort Study
Authors: Aleksandrova Krasimira , di Giuseppe Romina , Isermann Berend , Biemann Ronald , Schulze Matthias , Wittenbecher Clemens , Fritsche Andreas , Lehmann Rainer , Menzel Juliane , Weikert Cornelia , Pischon Tobias , Boeing Heiner
Published: April 2023

Supplementary Table 1. Spearman Partial Correlationsa of Omentin with Metabolic Biomarkers within the subcohort by adiposity status (n = 2295): The EPIC Potsdam Case-Cohort Study
Supplementary Figures from Circulating Omentin as a Novel Biomarker for Colorectal Cancer Risk: Data from the EPIC–Potsdam Cohort Study
Authors: Aleksandrova Krasimira , di Giuseppe Romina , Isermann Berend , Biemann Ronald , Schulze Matthias , Wittenbecher Clemens , Fritsche Andreas , Lehmann Rainer , Menzel Juliane , Weikert Cornelia , Pischon Tobias , Boeing Heiner
Published: April 2023

Supplementary Figures 1-3 Supplementary Figure 1. Pictorial representation of the case-cohort study design: the EPIC Potsdam Case-Cohort Study Supplementary Figure 2: Multivariable-adjusted Relative Risks (95% Confidence Intervals) of Circulating Omentin Concentrations with Risk of Colorectal Cancer with Additional Adjustment for Metabolic Biomarkers: The EPIC Potsdam Case-Cohort Study Supplementary Figure 3. Predictive ability of pre-diagnostic omentin concentrations beyond established lifestyle and metabolic risk factors for colorectal cancer (Panel A) men and (Panel B) women: The EPIC Potsdam Case-Cohort Study
Supplementary Figure S3 from MEF2D Transduces Microenvironment Stimuli to ZEB1 to Promote Epithelial–Mesenchymal Transition and Metastasis in Colorectal Cancer
Authors: Su Li , Luo Yongli , Yang Zhi , Yang Jing , Yao Chao , Cheng Feifei , Shan Juanjuan , Chen Jun , Li Fangfang , Liu Limei , Liu Chungang , Xu Yanmin , Jiang Lupin , Guo Deyu , Prieto Jesus , Ávila Matías A. , Shen Junjie , Qian Cheng
Published: April 2023

MEF2D is involved in various microenvironmental factors induced EMT processes.
Supplementary Figure S1 from MEF2D Transduces Microenvironment Stimuli to ZEB1 to Promote Epithelial–Mesenchymal Transition and Metastasis in Colorectal Cancer
Authors: Su Li , Luo Yongli , Yang Zhi , Yang Jing , Yao Chao , Cheng Feifei , Shan Juanjuan , Chen Jun , Li Fangfang , Liu Limei , Liu Chungang , Xu Yanmin , Jiang Lupin , Guo Deyu , Prieto Jesus , Ávila Matías A. , Shen Junjie , Qian Cheng
Published: April 2023

High MEF2D expression correlates with cancer cells mesenchymal and invasive features.
Effects of doxorubicin and hCXCL8 on stem associated markers in hHCC cell lines from Inducing Differentiation of Premalignant Hepatic Cells as a Novel Therapeutic Strategy in Hepatocarcinoma
Authors: Wolf Benita , Krieg Kathrin , Falk Christine , Breuhahn Kai , Keppeler Hildegard , Biedermann Tilo , Schmid Evi , Warmann Steven , Fuchs Joerg , Vetter Silvia , Thiele Dennis , Nieser Maike , Avci-Adali Meltem , Skokowa Yulia , Schöls Ludger , Hauser Stefan , Ringelhan Marc , Yevsa Tetyana , Heikenwalder Mathias , Kossatz-Boehlert Uta
Published: April 2023

Supplemental Figure 6 data file
Supplemental Figure S1 from Efficacy and Mechanisms of Aerobic Exercise on Cancer Initiation, Progression, and Metastasis: A Critical Systematic Review of In Vivo Preclinical Data
Authors: Ashcraft Kathleen A. , Peace Ralph M. , Betof Allison S. , Dewhirst Mark W. , Jones Lee W.
Published: April 2023

Figure S1
Supplementary Table S6 from Chromatin-Remodeling Complex SWI/SNF Controls Multidrug Resistance by Transcriptionally Regulating the Drug Efflux Pump ABCB1
Authors: Dubey Ramin , Lebensohn Andres M. , Bahrami-Nejad Zahra , Marceau Caleb , Champion Magali , Gevaert Olivier , Sikic Branimir I. , Carette Jan E. , Rohatgi Rajat
Published: April 2023

Two Spreadsheets of RNAseq data for Supplementary Figure 5A and 5B.
Supplementary Table 4 from Systematic Analysis of AU-Rich Element Expression in Cancer Reveals Common Functional Clusters Regulated by Key RNA-Binding Proteins
Authors: Hitti Edward , Bakheet Tala , Al-Souhibani Norah , Moghrabi Walid , Al-Yahya Suhad , Al-Ghamdi Maha , Al-Saif Maher , Shoukri Mohamed M. , Lánczky András , Grépin Renaud , Győrffy Balázs , Pagès Gilles , Khabar Khalid S.A.
Published: April 2023

Reporter sequences containing the putative AREs and their AU context
Supplementary Table S2 from Oncogenic Functions of Gli1 in Pancreatic Adenocarcinoma Are Supported by Its PRMT1-Mediated Methylation
Authors: Wang Yan , Hsu Jung-Mao , Kang Ya'an , Wei Yongkun , Lee Pei-Chih , Chang Shing-Jyh , Hsu Yi-Hsin , Hsu Jennifer L. , Wang Hung-Ling , Chang Wei-Chao , Li Chia-Wei , Liao Hsin-Wei , Chang Shih-Shin , Xia Weiya , Ko How-Wen , Chou Chao-Kai , Fleming Jason B. , Wang Huamin , Hwang Rosa F. , Chen Yue , Qin Jun , Hung Mien-Chie
Published: April 2023

Enzymes from list of Gli1-binding proteins.
Supplementary Figures from Landscape of Combination Immunotherapy and Targeted Therapy to Improve Cancer Management
Authors: Colli Leandro M. , Machiela Mitchell J. , Zhang Han , Myers Timothy A. , Jessop Lea , Delattre Olivier , Yu Kai , Chanock Stephen J.
Published: April 2023

Supplementary Figure 1: violin plots of NsM per tumor type for ICGC+TP data; Supplementary Figure 2: conditional regression beta correlation between discovery (TCGA) and replication (ICGC+TP) sets; Supplementary Figure 3: correlation between gene cDNA size and conditional regression beta values; Supplementary Figure 4: correlation between conditional regression beta for stage III and stage IV samples; Supplementary Figure 5: Tumor type frequencies (%) on patients that could present benefit for combination therapy, regarding gene mutated; Supplementary Figure 6: Venn diagram for the top five most common genes mutated on the 1,194 patients; Supplementary Figure 7: violin plot for the number of non-synonymous mutations (log10) across MET, ERBB2, PTEN, and NF2, regarding gene mutation, CNV, both or no alteration
Supplementary Material from Targeting Autocrine CCL5–CCR5 Axis Reprograms Immunosuppressive Myeloid Cells and Reinvigorates Antitumor Immunity
Authors: Ban Yi , Mai Junhua , Li Xin , Mitchell-Flack Marisa , Zhang Tuo , Zhang Lixing , Chouchane Lotfi , Ferrari Mauro , Shen Haifa , Ma Xiaojing
Published: April 2023

This file contains additional data such as detailed technical information, controls, gene expression profile and a diagram depicting our model.
Supplementary Figure 2 from NRF2 Induction Supporting Breast Cancer Cell Survival Is Enabled by Oxidative Stress–Induced DPP3–KEAP1 Interaction
Authors: Lu Kevin , Alcivar Allen L. , Ma Jianglin , Foo Tzeh Keong , Zywea Susan , Mahdi Amar , Huo Yanying , Kensler Thomas W. , Gatza Michael L. , Xia Bing
Published: April 2023

mRNA levels of DPP3, NRF2, NQO1, GCLM, KEAP1 and p62 in MCF7 cell lines stably overexpressing wt and mutant DPP3 species.