bluuebunny/crossref_metadata_2025 huggingface dataset:
Regression and Artificial Neural Network Modeling for the Prediction of Gray Leaf Spot of Maize
Authors: Paul P. A. , Munkvold G. P.
Published: May 2007

Regression and artificial neural network (ANN) modeling approaches were combined to develop models to predict the severity of gray leaf spot of maize, caused by Cercospora zeae-maydis. In all, 329 cases consisting of environmental, cultural, and location-specific variables were collected for field plots in Iowa between 1998 and 2002. Disease severity on the ear leaf at the dough to dent plant growth stage was used as the response variable. Correlation and regression analyses were performed to select potentially useful predictor variables. Predictors from the best 9 of 80 regression models were used to develop ANN models. A random sample of 60% of the cases was used to train the networks, and 20% each for testing and validation. Model performance was evaluated based on coefficient of determination (R2) and mean square error (MSE) for the validation data set. The best models had R2 ranging from 0.70 to 0.75 and MSE ranging from 174.7 to 202.8. The most useful predictor variables were hours of daily temperatures between 22 and 30°C (85.50 to 230.50 h) and hours of nightly relative humidity ≥90% (122 to 330 h) for the period between growth stages V4 and V12, mean nightly temperature (65.26 to 76.56°C) for the period between growth stages V12 and R2, longitude (90.08 to 95.14°W), maize residue on the soil surface (0 to 100%), planting date (in day of the year; 112 to 182), and gray leaf spot resistance rating (2 to 7; based on a 1-to-9 scale, where 1 = most susceptible to 9 = most resistant).
Biological Control to Protect Watermelon Blossoms and Seed from Infection by Acidovorax avenae subsp. citrulli
Authors: Fessehaie A. , Walcott R. R.
Published: May 2007

The efficacy of biological control seed treatments with Pseudomonas fluorescens (A506), Acidovorax avenae subsp. avenae (AAA 99-2), and an unidentified gram-positive bacterium recovered from watermelon seed (WS-1) was evaluated for the management of bacterial fruit blotch (BFB) of watermelon. In growth chamber and greenhouse experiments, seed treated with AAA 99-2 displayed superior disease suppression, reducing BFB transmission by 96.5%. AAA 99-2, P. fluorescens A506, and Kocide also suppressed the epiphytic growth of A. avenae subsp. citrulli when applied to attached watermelon blossoms 5 h prior to inoculation. Watermelon blossom protection reduced seed infestation by A. avenae subsp. citrulli. From blossoms treated with 0.1 M phosphate buffered saline (PBS), 63% of the resulting seed lots were infested with A. avenae subsp. citrulli. In contrast, for blossoms protected with WS-1, Kocide, P. fluorescens A506, and AAA 99-2, the proportion of infested seed lots were 48.3, 21.1, 24.1, and 13.8%, respectively. The effect of blossom treatments on seed lot infestation was statistically significant (P = 0.001) but WS-1 was not significantly different from PBS. These findings suggest that blossom protection with biological control agents could be a feasible option for managing BFB.
Genetic Structure of Magnaporthe grisea Populations Associated with St. Augustinegrass and Tall Fescue in Georgia
Authors: Tredway L. P. , Stevenson K. L. , Burpee L. L.
Published: May 2007

Amplified fragment length polymorphisms (AFLPs) were used to estimate phylogenetic relationships within Magnaporthe grisea and determine the genetic structure of M. grisea populations associated with tall fescue and St. Augustinegrass in Georgia. Sixteen clonal lineages were identified in a sample population of 948 isolates. Five lineages were isolated from tall fescue (E, G1, G2, G4, and H), with lineage G4 comprising 90% of the population. Isolates from tall fescue were closely related to those from perennial ryegrass, weeping lovegrass, and wheat. Two M. grisea lineages were isolated from St. Augustinegrass (C and K), with lineage C comprising 99.8% of the population. Populations from crabgrass were dominated (98%) by lineage K, but also contained a single lineage C isolate. Haplotype diversity indices ranged from 0.00 to 0.29 in tall fescue populations and from 0.00 to 0.04 in St. Augustinegrass populations. Selection due to host species was the primary factor determining population structure according to analysis of molecular variance; host cultivar and geographical region had no significant effect. The host range of M. grisea lineages from turfgrasses was determined in growth chamber experiments and supports the prominent role of host species in determining the genetic structure of M. grisea populations from turfgrasses in Georgia.
Ustilago maydis Infection of the Nonnatural Host Arabidopsis thaliana
Authors: Méndez-Morán Lucila , Reynaga-Peña Cristina G. , Springer Patricia S. , Ruiz-Herrera José
Published: May 2007

The experimental infection of Arabidopsis thaliana by the maize phytopathogenic hemibasidiomycete Ustilago maydis under axenic conditions is described. When plantlets were inoculated with mixtures of compatible haploids, the fungus was able to grow on the plant surface of inoculated seedlings in the form of white mycelium and invade the tissues, probably penetrating through stomata; however, it did not form teliospores. Symptoms of disease were increased anthocyanin formation, development of chlorosis, increased formation of secondary roots, induction of malformations in the leaves and petioles, induction of tissue necrosis, and stunting. In several cases, death of the invaded plants occurred. Interestingly, inoculation of single U. maydis haploid strains produced similar symptoms in Arabidopsis plantlets. In contrast, several mutants avirulent to maize also were avirulent or less virulent than wildtype strains on Arabidopsis. Collectively, the reported data suggest that the U. maydis-Arabidopsis pathosystem may constitute a useful experimental model for the analysis of some aspects of the virulence factors of the fungus. With the study of nonhost responses and their comparison to those occurring during maize infection, we will be able to elucidate some obscure aspects of U. maydis pathogenicity in the future.
Small-Scale Fungicide Spray Heterogeneity and the Coexistence of Resistant and Sensitive Pathogen Strains
Authors: Parnell S. , Gilligan C. A. , van den Bosch F.
Published: May 2007

Empirical evidence indicates that fungicide-resistant and sensitive strains can coexist for prolonged periods. Coexistence has important practical implications, for example, for the posttreatment recovery of sensitivity and consequently the life expectancy of fungicide products. Despite this, the factors influencing coexistence remain relatively unexplored. Ecological studies have shown that environmental heterogeneity can facilitate the coexistence of different species and subspecific groups. Here we use a simple differential equation model and show that fungicide spray heterogeneity per se is not sufficient for coexistence but that the outcome depends crucially on the competitive relationship between resistant and sensitive strains. The model incorporates the competition between resistant and sensitive pathogen strains for a limited supply of susceptible host tissue on a crop which has received an incomplete coverage of fungicide. We use a combination of invasibility analysis and model simulations to explore the conditions under which coexistence can occur. We further show that the maximum density of healthy host tissue isrealized when resistant and sensitive pathogen strains coexist. A set of key influencing parameters are identified and analyzed, and the consequences of the results for disease and resistance management are discussed.
Evaluating Predictors of Apple Scab with Receiver Operating Characteristic Curve Analysis
Authors: Turechek William W. , Wilcox Wayne F.
Published: May 2007

Apple scab (Venturia inaequalis) is a perennial threat to apple production in temperate climates throughout the world. In the eastern United States, apple scab is managed almost exclusively through the regular application of fungicides. Management of the primary phase of disease is focused on preventing infection by ascospores. Management of secondary cycles of infection is largely dependent on how well primary infections were controlled. In this study, we used receiver operating characteristic curve analysis to evaluate how well mid-season assessments of the incidence of apple scab on cluster leaves, clusters (i.e., the whorl of cluster leaves), or immature fruit can serve as predictors of apple scab on harvested fruit (harvest scab) and whether these mid-season assessments of scab could be used reliably to manage scab under various damage thresholds. Results showed that assessment of scab on immature fruit was superior at predicting harvest scab than were assessments made on clusters or cluster leaves at all damage thresholds evaluated. A management action threshold of 7% scab incidence on immature fruit was identified by Youden's index as the optimal action threshold to prevent harvest scab incidence from exceeding 5%. Action thresholds could be higher or lower than 7% when economic assumptions were factored in to the decision process. The utility of such a predictor is discussed.
The Role of Saprotrophy and Virulence in the Population Dynamics of Botrytis cinerea in Vineyards
Authors: Martinez Fabian , Dubos Bernadette , Fermaud Marc
Published: May 2007

Change in relative frequencies of the three main genetic types of Botrytis cinerea (Group I, Group II vacuma, and Group II transposa) were monitored over time from 1998 to 2000 in three Bordeaux vineyards not treated with fungicides. During 2000, Group I isolates, detected mostly at flowering comprised only 2.5% of the entire population. Within Group II, the complementary frequencies of vacuma and transposa isolates differed significantly depending on grapevine phenological stages and organs. Every year and at all sites, including one noble rot site, transposa isolates dominated at every stage, particularly on overwintering canes and at harvest (greater than 86.7% on berries). The complementary frequency of vacuma isolates reached a maximum on senescing floral caps (between 23.5 and 71.4%) and then decreased significantly until harvest on leaves and berries. In pathogenicity tests on grape berries, transposa isolates were significantly more virulent than were vacuma isolates. Mycelial growth rate was negatively correlated with virulence, notably on leaves in transposa and with double resistance to the fungicides carbendazim and vinclozolin. In vacuma, this double resistance was positively correlated with virulence on leaves. Change in the vacuma and transposa frequencies was most likely caused by differences in saprotrophic and pathogenic fitness. Possible interactions between fungicide resistance profiles and fitness are discussed.
Mutagenesis of β-1,3-Glucanase Genes in Lysobacter enzymogenes Strain C3 Results in Reduced Biological Control Activity Toward Bipolaris Leaf Spot of Tall Fescue and Pythium Damping-Off of Sugar Beet
Authors: Palumbo Jeffrey D. , Yuen Gary Y. , Jochum C. Christine , Tatum Kristin , Kobayashi Donald Y.
Published: May 2007

Lysobacter enzymogenes produces extracellular lytic enzymes capable of degrading the cell walls of fungi and oomycetes. Many of these enzymes, including β-1,3-glucanases, are thought to contribute to the biological control activity expressed by several strains of the species. L. enzymogenes strain C3 produces multiple extracellular β-1,3-glucanases encoded by the gluA, gluB, and gluC genes. Analysis of the genes indicates they are homologous to previously characterized genes in the related strain N4-7, each sharing >95% amino acid sequence identity to their respective counterparts. The gluA and gluC gene products encode enzymes belonging to family 16 glycosyl hydrolases, whereas gluB encodes an enzyme belonging to family 64. Mutational analysis indicated that the three genes accounted for the total β-1,3-glucanase activity detected in culture. Strain G123, mutated in all three glucanase genes, was reduced in its ability to grow in a minimal medium containing laminarin as a sole carbon source. Although strain G123 was not affected in antimicrobial activity toward Bipolaris sorokiniana or Pythium ultimum var. ultimum using in vitro assays, it was significantly reduced in biological control activity against Bipolaris leaf spot of tall fescue and Pythium damping-off of sugar beet. These results provide direct supportive evidence for the role of β-1,3-glucanases in biocontrol activity of L. enzymogenes strain C3.
Two Xylella fastidiosa Genotypes Associated with Almond Leaf Scorch Disease on the Same Location in California
Authors: Chen J. , Groves R. , Civerolo E. L. , Viveros M. , Freeman M. , Zheng Y.
Published: May 2007

Almond leaf scorch disease (ALSD) has recently reemerged in the San Joaquin Valley of California threatening almond production. ALSD is caused by Xylella fastidiosa, a nutritionally fastidious bacterium. Single nucleotide polymorphisms (SNPs) in the 16S rRNA gene (16S rDNA) of X. fastidiosa strains were identified to characterize the bacterial population in infected trees. Genotype-specific SNPs were used to design primers for multiplex polymerase chain reaction assays of early passage cultures. Two genotypically distinct types of X. fastidiosa strains, G-type and A-type, coexist simultaneously in the same infected almond orchard. This was substantiated by restriction fragment length polymorphism analysis of a different genetic locus, RST31-RST33, which has previously been used to identify and differentiate X. fastidiosa strains. Furthermore, unique bacterial colony morphology was consistently associated with the A-type X. fastidiosa strains. To our knowledge, this is the first report of a mixed genotype infection of X. fastidiosa disease on the same location under natural environmental conditions. The concept of mixed genotype infection could affect the current epidemiological study based on the assumption that one genotype causes ALSD on one location and, therefore, the disease management strategy.
Subcuticular-Intracellular Hemibiotrophic and Intercellular Necrotrophic Development ofColletotrichum acutatumon Almond
Authors: Diéguez-Uribeondo J. , Förster H. , Soto-Estrada A. , Adaskaveg J. E.
Published: May 2007

The early infection and colonization processes of Colletotrichum acutatum on leaves and petals of two almond cultivars with different susceptibility to anthracnose (i.e., cvs. Carmel and Nonpareil) were examined using digital image analysis of light micrographs and histological techniques. Inoculated tissue surfaces were evaluated at selected times after inoculation and incubation at 20°C. Depth maps and line profiles of the digital image analysis allowed rapid depth quantification of fungal colonization in numerous tissue samples. The results showed that the early development of C. acutatum on petals was different from that on leaf tissue. On petals, conidia germinated more rapidly, germ tubes were longer, and fewer appressoria developed than on leaves. On both tissues, penetration by the pathogen occurred from appressoria and host colonization was first subcuticular and then intracellular. On petals, colonizing hyphae were first observed 24 h after inoculation and incubation at 20°C, whereas on leaves they were seen 48 to 72 h after inoculation. Intercellular hyphae were formed before host cells became necrotic and macroscopic lesions developed on petals ≥48 h and on leaves ≥96 h after inoculation. Histological studies complemented data obtained by digital image analysis and showed that the fungus produced infection vesicles and broad hyphae below the cuticle and in epidermal cells. In both tissues, during the first 24 to 48 h after penetration fungal colonization was biotrophic based on the presence of healthy host cells adjacent to fungal hyphae. Later, during intercellular growth, the host-pathogen interaction became necrotrophic with collapsed host cells. Quantitative differences in appressorium formation and host colonization were found between the two almond cultivars studied. Thus, on the less susceptible cv. Nonpareil fewer appressoria developed and host colonization was reduced compared with that on cv. Carmel.
New Anastomosis Groups, AG-T and AG-U, of Binucleate Rhizoctonia spp. Causing Root and Stem Rot of Cut-Flower and Miniature Roses
Authors: Hyakumachi Mitsuro , Priyatmojo Achmadi , Kubota Mayumi , Fukui Hirokazu
Published: May 2007

Root and stem rot of cut-flower roses (Rosa spp.) was observed in commercial glasshouse-grown roses in 10 prefectures of Japan from 1998 through 2001. Binucleate-like Rhizoctonia spp. were isolated mainly from the disease plants. In all, 670 isolates were divided into two types based on cultural appearance; 168 isolates of light brown to brown type and 502 isolates of whitish type. A hyphal anastomosis reaction using representative isolates from each type revealed that the light brown to brown type belonged to anastomosis group G (AG-G), whereas the whitish type (AG-CUT) failed to anastomose with tester strains of binucleate Rhizoctonia AG-A through AG-S. Neither isolates of AG-G nor AG-CUT anastomosed with tester strains of a previously reported unknown AG (AG-MIN) of binucleate Rhizoctonia spp. collected from miniature roses. In pathogenicity tests, randomly selected isolates of the three groups caused root and stem rot on cut-flower and miniature roses. To differentiate AG-CUT and AG-MIN from known AGs of binucleate Rhizoctonia spp., restriction fragment length polymorphism (RFLP) and sequence analyses of a ribosomal (r)DNA internal transcribed spacer (ITS) region were conducted. Among the eight restriction enzymes used, HaeIII produced DNA banding patterns for AG-CUT that differed from those of tester strains and AG-MIN. Additionally, restriction profiles of AG-MIN differed from those of all tester strains. AG-G isolates from cut-flower roses had the same RFLP pattern as the tester strains of AG-G. Based on the results of hyphal anastomosis and RFLP and sequence analysis of an rDNA-ITS region, we propose that AG-CUT be designated AG-T and AG-MIN be designated AG-U, two new AGs of binucleate Rhizoctonia spp. The phylogenetic tree based on the sequence data of the rDNA-ITS region showed that isolates of AG-MIN were in a distinct clade from other AGs, whereas isolates of AG-CUT were in the same clade as those of AG-A. More detailed phylogenetic analysis besides rDNA-ITS region might be necessary for AG classification of binucleate Rhizoctonia spp.
A New Tomato-Infecting Tospovirus from Iran
Authors: Hassani-Mehraban Afshin , Saaijer Janneke , Peters Dick , Goldbach Rob , Kormelink Richard
Published: May 2007

A new tospovirus species serologically distinct from all other established tospoviruses was found in tomato in Iran. Typical disease symptoms observed include necrotic lesions on the leaves and yellow ring spots on the fruits, hence the name Tomato yellow ring virus (TYRV) was proposed. The S RNA of this virus was cloned and its 3,061 nucleotide long sequence showed features characteristic for tospoviral S RNA segments. The nucleocapsid (N) protein with a predicted Mr of 30.0 kDa showed closest relationship to the N protein of Iris yellow spot virus (74% sequence identity).
Genetic Diversity and Structure of the Apiosporina morbosa Populations on Prunus spp.
Authors: Zhang Jinxiu , Fernando W. G. Dilantha , Remphrey William. R.
Published: May 2007

Populations of Apiosporina morbosa collected from 15 geographic locations in Canada and the United States and three host species, Prunus virginiana, P. pensylvanica, and P. padus, were evaluated using the sequence-related amplified polymorphism (SRAP) technique to determine their genetic diversity and population differentiation. Extensive diversity was detected in the A. morbosa populations, including 134 isolates from Canada and the United States, regardless of the origin of the population. The number of polymorphic loci varied from 6.9 to 82.8% in the geographic populations, and from 41.4 to 79.3% in the populations from four host genotypes based on 58 polymorphic fragments. In all, 44 to 100% of isolates in the geographic populations and 43.6 to 76.2% in populations from four host genotypes represented unique genotypes. Values of heterozygosity (H) varied from 2.8 to 28.3% in the geographic populations and 10.2 to 26.1% in the populations from four host genotypes. In general, the A. morbosa populations sampled from wild chokecherry showed a higher genetic diversity than those populations collected from other host species, whereas the populations isolated from cultivated chokecherry, P. virginiana ‘Shubert Select’, showed a reduction of genetic diversity compared with populations from wild P. virginiana. Significant population differentiation was found among both the geographic populations (P < 0.05) and populations from different host genotypes (P < 0.02). In the geographic populations, most of populations from cultivated and wild P. virginiana were closely clustered, and no population differentiation was detected except for the populations from Morris, Morden, and Winnipeg, Manitoba, Canada. Furthermore, the populations from P. virginiana in the same geographic locations had higher genetic identity and closer genetic distance to each other compared with those from different locations. Four populations from P. virginiana, P. pensylvanica, and P. padus, were significantly differentiated from each other (P < 0.02), except there was no differentiation between the Shubert Select and wild chokecherry populations (>P> = 0.334). Indirect estimation of gene flow showed that significant restricted gene flow existed between populations from different regions and host species. Gene flow rates (Nm) varied from <1 to 12.5, with higher gene flow rates among population pairs from the same host species (P = 1.000). The analysis of molecular variance revealed that a major genetic variance source came from the genetic variation among isolates within populations regardless of the origin and host genotype of the population. Although some locations had a limited number of isolates, the results of this study clearly showed that the genetic diversity and population differentiation of A. morbosa were closely associated with host genotypes and geographic locations, but mostly with the former.
Tobacco curly shoot virus DNAβ Is Not Necessary for Infection but Intensifies Symptoms in a Host-Dependent Manner
Authors: Li Zhenghe , Xie Yan , Zhou Xueping
Published: May 2007

We demonstrated that only 11 isolates were associated with DNAβ among 39 Tobacco curly shoot virus (TbCSV)-infected, field-collected samples. An infectious clone of TbCSV-[Y35], an isolate associated with DNAβ, induced severe upward leaf curling in Nicotiana benthamiana. In the presence of its cognate DNAβ (TbCSV-[Y35] DNAβ), the symptom changed to a downward leaf curl. Furthermore, TbCSV-[Y35] alone was able to induce severe symptoms in tobacco and tomato plants, although co-infection with DNAβ intensified symptom severity in tobacco plants. In contrast to other begomovirus-DNAβ complexes, the satellite had no effect on the accumulation of TbCSV-[Y35] DNA in systemically infected host plants. The βC1 mutant caused symptoms comparable to those induced by TbCSV-[Y35] in the absence of DNAβ. TbCSV-[Y35] can be transmitted between plants by a whitefly vector, regardless of the presence or absence of DNAβ. For a TbCSV isolate not associated with DNAβ (TbCSV-[Y1]), systemic infection of N. benthamiana induced symptoms resembling those of TbCSV-[Y35]. Co-infection of TbCSV-[Y1] with TbCSV-[Y35] DNAβ induced symptoms similar to those following infection by TbCSV-[Y35] and its DNAβ. This indicates that TbCSV DNAβ is not necessary for infection but intensifies symptoms in a host-dependent manner. Thus, TbCSV may represent an evolutionary intermediate between the DNAβ requiring begomoviruses and the truly monopartite begomoviruses. The relevance of these results to our present understanding of the evolution of begomovirus-satellite disease complexes is discussed.
Initial Infection and Colonization of Leaves and Stems of Cling Peach by Tranzschelia discolor
Authors: Soto-Estrada A. , Förster H. , DeMason D. A. , Adaskaveg J. E.
Published: May 2007

Initial infection processes and the subsequent colonization of leaves and young stems of peach by Tranzschelia discolor were studied. On leaves where multiple disease cycles of peach rust occur during the growing season, urediniospores germinated after 4 h of wetness. Germ tubes became septate and formed appressoria only over leaf stomata beginning 18 h after inoculation. No appressoria, however, formed over stomata of positive replicas of leaf surfaces indicating nonthigmotropic responses of germ tubes. On young, primary-growth stems (ca. 8 weeks old), stomata were mostly closed, less frequent than on leaves, and recessed from the surface of the cuticle of the epidermis. Although appressoria formation was not observed on inoculated stems, germ tube growth of urediniospores was directional toward stomata. Penetration of stem tissue is apparently a less common event that was reflected by a lower occurrence of stem lesions compared with that of leaf lesions in our potted plant inoculation studies and previous field observations. Still, stem lesions are important as sources of primary inoculum each spring and were reproduced in this study for the first time. Fungal colonization of leaves and stems was subepidermal-intercellular and haustoria were commonly found within mesophyll or cortical cells, respectively. No fungal colonization was observed in cambial stem tissue. Vascular tissue was also not colonized and delimited lesions in leaves and stems. Morphological host responses were not observed in infections on either leaves or young stems. In older stems (>32 weeks old), however, the infection was delimited by a wound periderm after uredinial formation. Furthermore, with continued secondary growth, stems recovered and fungal lesions became part of the bark tissue of woody branches. Thus, the fungus must infect primary-growth branches each year to establish stem lesions.
Distinct Species Exist Within theCercospora apiiMorphotype
Authors: Groenewald Marizeth , Groenewald Johannes Z. , Crous Pedro W.
Published: May 2007

The genus Cercospora is one of the largest genera of hyphomycetes. Cercospora apii sensu lato is the oldest name for a large complex of morphologically indistinguishable Cercospora spp. occurring on a wide host range. There are currently 659 recognized Cercospora spp., and names of another 281 morphologically identical species are included in the synonymy of C. apii sensu lato. Two of the species that belong to the C. apii complex, C. apii and C. beticola, cause Cercospora leaf spot on Apium graveolens (celery) and Beta vulgaris (sugar beet), respectively. In the present study, multilocus sequence data, amplified fragment length polymorphism analysis, and cultural characteristics were used as additional features to characterize morphologically similar Cercospora strains occurring on celery and sugar beet. From the data obtained, it is shown that C. apii and C. beticola, although morphologically similar and able to cross-infect each others' hosts, are distinct functional species that should be retained as separate entities. Furthermore, a third, as yet undescribed species of Cercospora was detected in celery fields in Korea and Venezuela, suggesting that additional undescribed species also may be found to cause Cercospora leaf spot on celery. A polymerase chain reactionbased diagnostic protocol distinguishes all three Cercospora spp.
Analysis of Leptosphaeria maculans Race Structure in a Worldwide Collection of Isolates
Authors: Balesdent M. H. , Barbetti M. J. , Li Hua , Sivasithamparam K. , Gout L. , Rouxel T.
Published: May 2007

Leptosphaeria maculans, the causal agent of stem canker of oilseed rape, develops gene-for-gene interactions with its hosts. To date, eight L. maculans avirulence (Avr) genes, AvrLm1 to AvrLm8, have been genetically characterized. An additional Avr gene, AvrLm9, that interacts with the resistance gene Rlm9, was genetically characterized here following in vitro crosses of the pathogen. A worldwide collection of 63 isolates, including the International Blackleg of Crucifers Network collection, was genotyped at these nine Avr loci. In a first step, isolates were classified into pathogenicity groups (PGs) using two published differential sets. This analysis revealed geographical disparities as regards the proportion of each PG. Genotyping of isolates at all Avr loci confirmed the disparities between continents, in terms of Avr allele frequencies, particularly for AvrLm2, AvrLm3, AvrLm7, AvrLm8, and AvrLm9, or in terms of race structure, diversity, and complexity. Twenty-six distinct races were identified in the collection. A larger number of races (n = 18) was found in Australia than in Europe (n = 8). Mean number of virulence alleles per isolate was also higher in Australia (5.11 virulence alleles) than in Europe (4.33) and Canada (3.46). Due to the diversity of populations of L. maculans evidenced here at the race level, a new, open terminology is proposed for L. maculans race designation, indicating all Avr loci for which the isolate is avirulent.
Pepper (Capsicum annuum) Is a Dead-End Host for Tomato yellow leaf curl virus
Authors: Morilla G. , Janssen D. , García-Andrés S. , Moriones E. , Cuadrado I. M. , Bejarano E. R.
Published: May 2007

Tomato yellow leaf curl (TYLC) is one of the most devastating pathogens affecting tomato (Lycopersicon esculentum) worldwide. The disease is caused by a complex of begomovirus species, two of which, Tomato yellow leaf curl Sardinia virus (TYLCSV) and Tomato yellow leaf curl virus (TYLCV), are responsible for epidemics in Southern Spain. TYLCV also has been reported to cause severe damage to common bean (Phaseolus vulgaris) crops. Pepper (Capsicum annuum) plants collected from commercial crops were found to be infected by isolates of two TYLCV strains: TYLCV-Mld[ES01/99], an isolate of the mild strain similar to other TYLCVs isolated from tomato crops in Spain, and TYLCV-[Alm], an isolate of the more virulent TYLCV type strain, not previously reported in the Iberian Peninsula. In this work, pepper, Nicotiana benthamiana, common bean, and tomato were tested for susceptibility to TYLCV-Mld[ES01/99]and TYLCV-[Alm] by Agrobacterium tumefaciens infiltration, biolistic bombardment, or Bemisia tabaci inoculation. Results indicate that both strains are able to infect plants of these species, including pepper. This is the first time that infection of pepper plants with TYLCV clones has been shown. Implications of pepper infection for the epidemiology of TYLCV are discussed.
Activity of Hydroxamic Acids from Secale cereale Against the Plant-Parasitic Nematodes Meloidogyne incognita and Xiphinema americanum
Authors: Zasada I. A. , Meyer S. L. F. , Halbrendt J. M. , Rice C.
Published: May 2007

Cyclic hydroxamic acids are secondary metabolites found in the family Poaceae and have been implicated in the allelopathy of rye (Secale cereale). The toxicity of these compounds against plant-parasitic nematodes is unknown. DIBOA (2,4-dihydroxy-(2H)-1,4-benzoxazin-3(4H)-one), DIMBOA (2,4-hydroxy-7-methoxy-(2H)-1,4-benzoxazin-3(4H)-one), and their degradation products BOA (benzoxazolin-2(3H)-one) and MBOA (6-methoxy-benzoxazolin-2(3H)-one) were screened in vitro against Meloidogyne incognita second-stage juveniles (J2) and eggs and mixed-stages of Xiphinema americanum. Xiphinema americanum was more sensitive to DIBOA and DIMBOA than M. incognita J2, with a maximum apparent mortality of 96 and 92% compared to 73 and 72% at 90 μg/ml. Eggs of M. incognita were less sensitive to the hydroxamic acids than J2; only DIBOA resulted in a 50% reduction in egg hatch, with a lethal concentration (LC50) of 74 μg/ml compared to 21 μg/ml for J2. When M. incognita J2 were exposed to DIBOA for 48 h and the compound was removed and replaced with water, the LC50 value increased from 21.0 to 40.7 μg/ml. MBOA was not toxic to X. americanum or M. incognita eggs, but was toxic to M. incognita J2, with LC50 values of 44 and 20 μg/ml before and after the compound was removed and replaced with water. BOA was the least toxic hydroxamic acid tested; it did not reduce M. incognita egg hatch after 1 week of exposure or increase X. americanum mortality after 24 h of exposure. While in vitro studies provide a valuable starting point in determining the toxicity of the chemical component of rye, the relevance of the data to soil remains to be determined.
Simulation of Apparent Infection Rate to Predict Severity of Soybean Rust Using a Fuzzy Logic System
Authors: Kim K. S. , Wang T. C. , Yang X. B.
Published: May 2007

Few biologically based models to assess the risk of soybean rust have been developed because of difficulty in estimating variables related to infection rate of the disease. A fuzzy logic system, however, can estimate apparent infection rate by combining meteorological variables and biological criteria pertinent to soybean rust severity. In this study, a fuzzy logic apparent infection rate (FLAIR) model was developed to simulate severity of soybean rust and validated using data from field experiments on two soybean cultivars, TK 5 and G 8587. The FLAIR model estimated daily apparent infection rate of soybean rust and simulated disease severity based on population dynamics. In weekly simulation, the FLAIR model explained >85% of variation in disease severity. In simulation of an entire epidemic period, the FLAIR model was able to predict disease severity accurately once initial values of disease severity were predicted accurately. Our results suggest that a model could be developed to determine apparent infection rate and an initial value of disease severity in advance using forecasted weather data, which would provide accurate prediction of severity of soybean rust before the start of a season.
Leaf and Flower Blight Caused byMonilinia vaccinii-corymbosion Lowbush Blueberry: Effects on Yield and Relationship to Bud Phenology
Authors: Penman L. N. , Annis S. L.
Published: May 2007

Naturally established lowbush blueberry clones in four fields were evaluated for the incidence of leaf and flower blight, proportion of mummy berries, and yield reductions caused by Monilinia vacciniicorymbosi. The relationship between the phenology of flower and leaf bud development and susceptibility also was examined. Three fields were examined over one crop year and one field was studied in two subsequent crop years. The incidence of stems with blight was correlated to incidence of leaf blight in all fields and to incidence of flower blight in one field. Incidence of leaf and flower blight and the proportion of mummy berries produced were not correlated. Lowbush blueberry clones with higher incidence levels of leaf blight had reduced fruit set and lower berry weights. For healthy stems, leaf-to-fruit ratios had no effect on berry weight in most fields. In contrast, blighted stems with higher leaf-to-fruit ratios had higher berry weights in three fields. Stems with slowerdeveloping leaf and flower buds had less leaf and flower blight, respectively, than stems with faster bud development. Some blueberry clones may avoid infection by delaying production of susceptible tissue until after ascospore release by M. vaccinii-corymbosi.
Simulation of Potato Late Blight in the Andes. II: Validation of the LATEBLIGHT Model
Authors: Andrade-Piedra Jorge L. , Hijmans Robert J. , Juárez Henry S. , Forbes Gregory A. , Shtienberg Dani , Fry William E.
Published: May 2007

LATEBLIGHT, a mathematical model that simulates the effect of weather, host growth and resistance, and fungicide use on asexual development and growth of Phytophthora infestans on potato foliage, was validated for the Andes of Peru. Validation was needed due to recent modifications made to the model, and because the model had not been formally tested outside of New York State. Prior to validation, procedures to estimate the starting time of the epidemic, the amount of initial inoculum, and leaf wetness duration were developed. Observed data for validation were from field trials with three potato cultivars in the Peruvian locations of Comas and Huancayo in the department of Junín, and Oxapampa in the department of Pasco in 1999 and 2000 for a total of 12 epidemics. These data had not been used previously for estimating model parameters. Observed and simulated epidemics were compared graphically using disease progress curves and numerically using the area under the disease progress curve in a confidence interval test, an equivalence test, and an envelope of acceptance test. The level of agreement between observed and simulated epidemics was high, and the model was found to be valid according to subjective and objective performance criteria. The approach of measuring fitness components of potato cultivars infected with isolates of a certain clonal lineage of P. infestans under controlled conditions and then using the experimental results as parameters of LATEBLIGHT proved to be effective. Fungicide treatments were not considered in this study.
Genetic and Phenotypic Variation of the Pepper golden mosaic virus Complex
Authors: Brown J. K. , Idris A. M. , Ostrow K. M. , Goldberg N. , French R. , Stenger D. C.
Published: May 2007

Three isolates of the bipartite begomovirus Pepper golden mosaic virus (PepGMV) were characterized for genomic and biological properties. The complete nucleotide sequences of the DNA-A and DNA-B components were determined from infectious clones of PepGMV-Serrano (PepGMV-Ser), PepGMV-Mosaic (PepGMV-Mo), and PepGMV-Distortion (PepGMV-D). Nucleotide sequence identity among PepGMV components ranged from 91 to 96% for DNA-A and from 84 to 99% for DNA-B, with each PepGMV component most closely related to the corresponding component of Cabbage leaf curl virus (CaLCV). However, phylogenetic relationships among begomovirus components were incongruent because DNA-A of PepGMV and CaLCV share an inferred evolutionary history distinct from that of DNA-B. The cloned components of PepGMV-Ser, -Mo, and -D were infectious by biolistic inoculation to pepper but differed in symptom expression: PepGMV-Ser exhibited a bright golden mosaic, PepGMV-Mo produced a yellow-green mosaic, and PepGMV-D caused only a mild mosaic and foliar distortion followed by a “recovery” phenotype in which leaves developing after initial symptom expression appeared normal. Differences in symptoms also were observed on tomato, tobacco, and Datura stramonium. Progeny virus derived from clones of PepGMV-Ser and -Mo were transmitted from pepper to pepper by the B biotype of Bemisia tabaci; progeny virus derived from PepGMV-D clones was not transmissible by the B biotype. Reassortant genomes derived from heterologous DNA components of the three isolates were infectious in all possible pairwise combinations, with symptom phenotype in pepper determined by the DNA-B component. Collectively, these results indicate that the three virus isolates examined may be considered distinct strains of PepGMV that have the capacity to exchange genetic material.
Identification, Chromosome Location, and Diagnostic Markers for a New Gene (YrCN19) for Resistance to Wheat Stripe Rust
Authors: Luo P. G. , Ren Z. L. , Zhang H. Q. , Zhang H. Y.
Published: May 2007

Several wheat lines and cultivars of wheat (Triticum aestivum) originating from the southwestern region of China were found to be highly resistant to stripe rust by inoculation with the prevalent races (CYR30, CYR31, and CYR32) and newly emerged races (H46-4, SY11-4 and SY11-14) of the pathogen. An inheritance study of the resistance to stripe rust was carried out by crossing resistant AIM6 with susceptible BeiZ76. Results indicated that the resistance to stripe rust was controlled by a single dominant gene. The 112 F2 plants chosen from the cross BeiZ76/ AIM6 were analyzed with 218 pairs of microsatellite primers to determine the map location of the resistance gene. A simple sequence repeat marker on chromosome arm 2BS, Xgwm410, showed polymorphism and co-segregation between stripe rust resistant and susceptible plants. From the pedigree, inheritance, molecular marker, and resistance response, it is concluded that the stripe rust resistance gene in wheat cv. Chuan-nong19 (CN19) and wheat lines AIM5 and AIM6 is a novel gene, designated YrCN19. The microsatellite primer Xgwm410 is a diagnostic marker of the resistance gene YrCN19, which has potential for application in the marker-assisted breeding of wheat.
Consistent Quantitative Trait Loci in Pea for Partial Resistance toAphanomyces euteichesIsolates from the United States and France
Authors: Pilet-Nayel M. L. , Muehlbauer F. J. , McGee R. J. , Kraft J. M. , Baranger A. , Coyne C. J.
Published: May 2007

Development of pea cultivars resistant to Aphanomyces root rot, the most destructive root disease of pea worldwide, is a major disease management objective. In a previous study of a mapping population of 127 recombinant inbred lines (RILs) derived from the cross ‘Puget’ (susceptible) × ‘90-2079’ (partially resistant), we identified seven genomic regions, including a major quantitative trait locus (QTL), Aph1, associated with partial resistance to Aphanomyces root rot in U.S. fields (21). The objective of the present study was to evaluate, in the same mapping population, the specificity versus consistency of Aphanomyces resistance QTL under two screening conditions (greenhouse and field, by comparison with the previous study) and with two isolates of Aphanomyces euteiches originating from the United States and France. The 127 RILs were evaluated in the greenhouse for resistance to pure culture isolates SP7 (United States) and Ae106 (France). Using the genetic map previously described, a total of 10 QTL were identified for resistance in greenhouse conditions to the two isolates. Among these were Aph1, Aph2, and Aph3, previously detected for partial field resistance in the United States. Aph1 and Aph3 were detected with both isolates and Aph2 with only the French isolate. Seven additional QTL were specifically detected with one of the two isolates and were not identified for partial field resistance in the United States. The consistency of the detected resistance QTL over two screening environments and isolates is discussed with regard to pathogen variability, and disease assessment and QTL detection methods. This study suggests the usefulness of three consistent QTL, Aph1, Aph2, and Aph3, for marker-assisted selection.
Effect of Mixed and Single Crops on Disease Suppressiveness of Soils
Authors: Hiddink Gerbert A. , Termorshuizen Aad J. , Raaijmakers Jos M. , van Bruggen Ariena H. C.
Published: May 2007

The effect of mixed cropping on disease suppressiveness of soils was tested for two cropping systems, Brussels sprouts-barley and triticale-white clover. Disease suppressiveness of field soils was evaluated in bioassays for the soilborne pathogens Rhizoctonia solani, Fusarium oxysporum f. sp. lini, and Gaeumannomyces graminis var. tritici. For both cropping systems, mixed cropping did not enhance disease suppressiveness of the soils. In some cases, soil cropped to barley alone was significantly more suppressive to F. oxysporum f. sp. lini than soils cropped to Brussels sprouts or the mixture of Brussels sprouts and barley. Analyses of the diversity of the indigenous bacterial and fungal microflora by denaturing gradient gel electrophoresis of amplified 16S- and 18S-rDNA fragments, respectively, revealed, in most cases, no significant differences between mixed and mono-cropped soils. In conclusion, in this study, mixed cropping of soils with Brussels sprouts and barley or with triticale and white clover did not enhance microbial diversity or disease suppressiveness of soils to three different soilborne plant pathogens.
No Role for Bacterially Produced Salicylic Acid in Rhizobacterial Induction of Systemic Resistance in Arabidopsis
Authors: Ran L. X. , van Loon L. C. , Bakker P. A. H. M.
Published: May 2007

The role of bacterially produced salicylic acid (SA) in the induction of systemic resistance in plants by rhizobacteria is far from clear. The strong SA producer Pseudomonas fluorescens WCS374r induces resistance in radish but not in Arabidopsis thaliana, whereas application of SA leads to induction of resistance in both plant species. In this study, we compared P. fluorescens WCS374r with three other SA-producing fluorescent Pseudomonas strains, P. fluorescens WCS417r and CHA0r, and P. aeruginosa 7NSK2 for their abilities to produce SA under different growth conditions and to induce systemic resistance in A. thaliana against bacterial speck, caused by P. syringae pv. tomato. All strains produced SA in vitro, varying from 5 fg cell-1 for WCS417r to >25 fg cell-1 for WCS374r. Addition of 200 μM FeCl3 to standard succinate medium abolished SA production in all strains. Whereas the incubation temperature did not affect SA production by WCS417r and 7NSK2, strains WCS374r and CHA0r produced more SA when grown at 33 instead of 28°C. WCS417r, CHA0r, and 7NSK2 induced systemic resistance apparently associated with their ability to produce SA, but WCS374r did not. Conversely, a mutant of 7NSK2 unable to produce SA still triggered induced systemic resistance (ISR). The possible involvement of SA in the induction of resistance was evaluated using SA-nonaccumulating transgenic NahG plants. Strains WCS417r, CHA0r, and 7NSK2 induced resistance in NahG Arabidopsis. Also, WCS374r, when grown at 33 or 36°C, triggered ISR in these plants, but not in ethylene-insensitive ein2 or in non-plant pathogenesis- related protein-expressing npr1 mutant plants, irrespective of the growth temperature of the bacteria. These results demonstrate that, whereas WCS374r can be manipulated to trigger ISR in Arabidopsis, SA is not the primary determinant for the induction of systemic resistance against bacterial speck disease by this bacterium. Also, for the other SAproducing strains used in this study, bacterial determinants other than SA must be responsible for inducing resistance.
Recent Developments in Pathogen Detection Arrays: Implications for Fungal Plant Pathogens and Use in Practice
Authors: Lievens Bart , Thomma Bart P. H. J.
Published: May 2007

The failure to adequately identify plant pathogens from culture-based morphological techniques has led to the development of culture-independent molecular approaches. Increasingly, diagnostic laboratories are pursuing fast routine methods that provide reliable identification, sensitive detection, and accurate quantification of plant pathogens. In addition, since plants or parts thereof can be infected by multiple pathogens, multiplex assays that can detect and quantify different pathogens simultaneously are highly desirable. Technologies that can meet these requirements, especially those involving polymerase chain reaction, are being developed and implemented in horticultural and agricultural practice. Currently, DNA array technology is the most suitable technique for multiplex detection of plant pathogens. Recently, a quantitative aspect was added to this technology, making DNA arrays highly attractive for various research and practical applications. Here, we review the most important recent advances in molecular plant pathogen diagnostics, with special attention to fungal molecular diagnostics. In addition to their applicability in practice, the different criteria that have to be fulfilled for developing robust detection procedures that can routinely be used by diagnostic laboratories are discussed.